©2022-2024 Deplancke lab, EPFL, 1015 Lausanne
| Reference | Phenotypes | Categories | Status | Publication date | Submitted by | |
|---|---|---|---|---|---|---|
| Howick et al., 2017 The genetic architecture of defence as resistance to and tolerance of bacterial infection in Drosophila melanogaster [10.1111/mec.14017][FBrf0235063] |
BacterialLoad_PR BacterialLoad_PR_ADJ Tolerance_PRettgeri pc_Surv_PRettgeri pc_Surv_PRettgeriADJ | Immunity Resistance | Curated |
2017-02-28 | Roel Bevers | |
| Brown et al., 2013 Genome-wide association mapping of natural variation in odour-guided behaviour in Drosophila [10.1111/gbb.12048][FBrf0222011] |
FarPoint_Butanedione LocRatio_Butanedione Resp_Butanedion_30pc Resp_Butanedion_90pc TotArea_Butanedione | Olfactory Behaviour Sensory | Curated |
2013-06-30 | Roel Bevers | |
| Dembeck et al., 2015 Genetic Architecture of Abdominal Pigmentation in Drosophila melanogaster [10.1371/journal.pgen.1005163][FBrf0228267] |
AbdominaPigmentT5 AbdominaPigmentT6 | Appearance | Curated |
2015-04-30 | Roel Bevers | |
| Najarro et al., 2017 Loci Contributing to Boric Acid Toxicity in Two Reference Populations of Drosophila melanogaster [10.1534/g3.117.041418][FBrf0235744] |
LifespanBoricAcid | Resistance Toxicity | Curated |
2017-05-31 | Roel Bevers | |
| Harbison et al., 2018 Genome-Wide Association Study of Circadian Behavior in Drosophila melanogaster [10.1007/s10519-018-9932-0][FBrf0241121] |
Circadian_Per_ChiSq Circadian_Per_MESA Rhythmicity_Index | Sleep Life history traits Behaviour | Curated |
2018-12-31 | Roel Bevers | |
| Vaisnav et al., 2014 Genome-Wide Association Analysis of Radiation Resistance in Drosophila melanogaster [10.1371/journal.pone.0104858][FBrf0225939] |
Survival_Radiation | Resistance | Curated |
2014-08-13 | Roel Bevers | |
| Bou Sleiman et al., 2015 Genetic, molecular and physiological basis of variation in Drosophila gut immunocompetence [10.1038/ncomms8829][FBrf0229120] |
Ecc15_FracDead_10d PE_FracDead_3d | Resistance Microbiota Immunity | Curated |
2015-10-31 | Roel Bevers | |
| Arya et al., 2010 Natural Variation, Functional Pleiotropy and Transcriptional Contexts of Odorant Binding Protein Genes in Drosophila melanogaster [10.1534/genetics.110.123166][FBrf0212597] |
mn_Longevity mn_RespAcetophen_3_5 mn_RespBenzaldeh_3_5 mn_RespHexanol_0_3 mn_RespHexanol_3_5 | Ageing Olfactory Sensory Life history traits Behaviour | Curated |
2010-11-30 | Roel Bevers | |
| Grubbs et al., 2013 New Components of Drosophila Leg Development Identified through Genome Wide Association Studies [10.1371/journal.pone.0060261][FBrf0221227] |
Femur_Length_T1 Femur_Length_T2 Tarsus_Length_T1 Tarsus_Length_T2 Tibia_Length_T1 Tibia_Length_T2 Total_Leg_Length_T1 Total_Leg_Length_T2 pc_Femur_Leg_T1 pc_Femur_Leg_T2 pc_Tarsus_Leg_T1 pc_Tarsus_Leg_T2 pc_Tibia_Leg_T1 pc_Tibia_Leg_T2 | Limb Development Development Anatomy Appearance | Curated |
2013-03-31 | Roel Bevers | |
| Jordan et al., 2012 Genome-Wide Association for Sensitivity to Chronic Oxidative Stress in Drosophila melanogaster [10.1371/journal.pone.0038722][FBrf0218606] |
mn_NegGeotaxis_CTRL mn_NegGeotaxis_MSB mn_StartleResp_CTRL mn_StartleResp_MSB | Locomotion Ageing Resistance Life history traits | Curated |
2012-06-07 | Roel Bevers | |
| He et al., 2016 Epistatic partners of neurogenic genes modulate Drosophila olfactory behavior [10.1111/gbb.12279][FBrf0230854] |
Canton S(B)/DGRP Sema-5cBG2386/DGRP neurBG2391/DGRP | Behaviour | Under curation |
2016-01-31 | romain.rochepeau | |
| Shorter et al., 2015 Genetic architecture of natural variation in Drosophila melanogaster aggressive behavior [10.1073/pnas.1510104112][FBrf0228967] |
mn_AggressionScore | Behaviour | Curated |
2015-07-06 | Roel Bevers | |
| Srivastav et al., 2017 Paternal Induction of Hybrid Dysgenesis in Drosophila melanogaster Is Weakly Correlated with Both P-Element and hobo Element Dosage [10.1534/g3.117.040634][FBrf0235441] |
CN_Hobo_TEMP CN_Hobo_TEMP_W CN_Hobo_TIDAL CN_Hobo_TIDAL_W Hobo_Relative_Cov Ovarian_Atrophy pc_CN_Hobo_HC pc_CN_Hobo_HS pc_Deletion_PElem_GC pc_Deletion_PElem_GS pc_Deletion_PElem_HC pc_Deletion_PElem_HS pc_Deletion_PElem_SC pc_Deletion_PElem_SS pc_FLCN_Hobo_HC pc_FLCN_Hobo_HS pc_FL_Hobo_HC pc_FL_Hobo_HS pc_FL_PElem_GC pc_FL_PElem_GS pc_FL_PElem_HC pc_FL_PElem_HS pc_FL_PElem_SC pc_FL_PElem_SS pc_FPKP_PElem_GC pc_FPKP_PElem_GS pc_FPKP_PElem_HC pc_FPKP_PElem_HS pc_FPKP_PElem_SC pc_FPKP_PElem_SS pc_KP_PElem_GC pc_KP_PElem_GS pc_KP_PElem_HC pc_KP_PElem_HS pc_KP_PElem_SC pc_KP_PElem_SS | Genome architecture | Curated |
2017-04-30 | Roel Bevers | |
| Richardson et al., 2012 Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster [10.1371/journal.pgen.1003129][FBrf0220355] |
Mitochon_Breadth_Cov Mitochon_Consens_Dif Mitochon_Consens_Len Mitochon_Depth_Cov Mitochon_Hap_COI2160 Mitochon_Hap_COI2187 Mitochon_Haplotype Mitochon_Mapped_Read Mitochondrial_Clade Nuclear_Breadth_Cov Nuclear_Consensu_Dif Nuclear_Consensu_Len Nuclear_Depth_Cov Nuclear_Mapped_Reads Reads_Total Total_Number_bp Wolbachi_Breadth_Cov Wolbachi_Consens_Dif Wolbachi_Consens_Len WolbachiaStatus WolbachiaStatus_PCR Wolbachia_Depth_Cov Wolbachia_Map_Reads | Immunity Microbiota Genome architecture | Curated |
2012-12-19 | Roel Bevers | |
| MacKay et al., 2012 The Drosophila melanogaster Genetic Reference Panel [10.1038/nature10811][FBrf0217434] |
Novel_TEs SegregVariants_2L SegregVariants_2R SegregVariants_3L SegregVariants_3R SegregVariants_X Shared_TEs Total_TEs Unique_TEs WolbachiaStatus mn_ChillComaRec mn_StartleRes mn_StarvationRes mn_StarvationRes_ADJ pc_SegregVariants_2L pc_SegregVariants_2R pc_SegregVariants_3L pc_SegregVariants_3R pc_SegregVariants_X | Microbiota Locomotion Resistance Behaviour | Curated |
2012-01-31 | Roel Bevers | |
| Morozova et al., 2015 Polymorphisms in early neurodevelopmental genes affect natural variation in alcohol sensitivity in adult drosophila [10.1186/s12864-015-2064-5][FBrf0229987] |
mn_AlcoholSens_E1 mn_AlcoholSens_E2 mn_AlcoholTolerance se_AlcoholSens_E1 se_AlcoholSens_E2 se_AlcoholTolerance | Metabolism Resistance Toxicity | Curated |
2015-11-30 | Roel Bevers | |
| Wang et al., 2017 The genetic basis for variation in resistance to infection in the Drosophila melanogaster genetic reference panel [10.1371/journal.ppat.1006260][FBrf0235068] |
LT50_Metarhizium_Ani LT50_Pseudomonas_Aer | Resistance Immunity | Curated |
2017-03-02 | Roel Bevers | |
| Durham et al., 2014 Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits [10.1038/ncomms5338][FBrf0225589] |
lsm_Life_Fecundity lsm_Lifespan lsm_Week1_Fecundity lsm_Week3_Fecundity lsm_Week5_Fecundity lsm_Week7_Fecundity mn_Life_Fecundity mn_Lifespan mn_Week1_Fecundity mn_Week3_Fecundity mn_Week5_Fecundity mn_Week7_Fecundity | Ageing Fecundity Life history traits | Curated |
2014-08-31 | Roel Bevers | |
| Vonesch et al., 2016 Genome-Wide Analysis Reveals Novel Regulators of Growth in Drosophila melanogaster [10.1371/journal.pgen.1005616][FBrf0230608] |
Eye_Area Eye_Interocular_Dist Head_Width Shoulder_Width Thorax_Length Wing_ACV_Length Wing_Anterior_to_L2 Wing_Area Wing_CentroidSize Wing_Intervein_Area1 Wing_Intervein_Area2 Wing_Intervein_Area3 Wing_Intervein_Area4 Wing_Intervein_Area5 Wing_Intervein_Area6 Wing_Intervein_Area7 Wing_Intervein_Area8 Wing_L1_Vein_Length Wing_L2_Vein_Length Wing_L3_Vein_Length Wing_L4_Vein_Length Wing_L5_Vein_Length Wing_L6_Vein_Length Wing_Length Wing_PCV_Length Wing_Posterior_to_L5 Wing_Width | Anatomy Appearance Organ Size | Curated |
2016-01-10 | Roel Bevers | |
| Carbone et al., 2016 Genetic architecture of natural variation in visual senescence in Drosophila [10.1073/pnas.1613833113][FBrf0233864] |
mn_PhototaxDark_wk1 mn_PhototaxLight_wk1 mn_PhototaxisScor_1w mn_PhototaxisScor_2w mn_PhototaxisScor_4w se_PhototaxDark_wk1 se_PhototaxLight_wk1 se_PhototaxisScor_1w se_PhototaxisScor_2w se_PhototaxisScor_4w | Ageing Sensory Life history traits | Curated |
2016-10-24 | Roel Bevers | |
| Weber et al., 2012 Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster [10.1371/journal.pone.0034745][FBrf0218073] |
MenadioneSodBi_Resis Paraquat_Resistance | Resistance | Curated |
2012-04-03 | Roel Bevers | |
| Lavoy et al., 2018 Genetic Modifiers of Neurodegeneration in a Drosophila Model of Parkinson’s Disease [10.1534/genetics.118.301119][FBrf0239578] |
W2 Vial 1 ascension (cm) W2 Vial 2 ascension (cm) W2 Vial 3 ascension (cm) W2 Vial 4 ascension (cm) W6 Vial 1 ascension (cm) W6 Vial 2 ascension (cm) W6 Vial 3 ascension (cm) W6 Vial 4 ascension (cm) Week 2 mean ascension (cm) Week 6 mean ascension (cm) | Behaviour | Under curation |
2018-07-31 | romain.rochepeau | |
| Davis et al., 2021 Characterizing dopaminergic neuron vulnerability using genome-wide analysis [10.1093/genetics/iyab081][FBrf0252031] |
AVG PPL1 neurons | Behaviour | Under curation |
2021-08-08 | romain.rochepeau | |
| Duneau et al., 2018 Signatures of insecticide selection in the genome of Drosophila melanogaster [10.1101/287250] |
Delta_Alive.at.48h Experience 1 Delta_Alive.at.48h Experience 2 Delta_Alive.at.48h Experience 3 Delta_Alive.at.48h Experience 4 Delta_Alive.at.48h Experience 5 Delta_Death.at.48h Experience 1 Delta_Death.at.48h Experience 2 Delta_Death.at.48h Experience 3 Delta_Death.at.48h Experience 4 Delta_Death.at.48h Experience 5 Sample.size Experience 1 Sample.size Experience 2 Sample.size Experience 3 Sample.size Experience 4 Sample.size Experience 5 | Resistance | Under curation |
2018-03-22 | romain.rochepeau | |
| Ivanov et al., 2015 Longevity GWAS Using the Drosophila Genetic Reference Panel [10.1093/gerona/glv047][FBrf0230043] |
WolbachiaStatus md_Lifespan mn_Lifespan sd_Lifespan | Ageing | Curated |
2015-11-30 | Roel Bevers | |
| Katzenberger et al., 2015 Death following traumatic brain injury in Drosophila is associated with intestinal barrier dysfunction [10.7554/eLife.04790][FBrf0227948] |
mn_MortalityInd sd_MortalityInd | Resistance Life history traits | Curated |
2015-03-04 | Roel Bevers | |
| Harbison et al., 2013 Genome-wide association study of sleep in Drosophila melanogaster [10.1186/1471-2164-14-281][FBrf0221487] |
cv_BoutLength_Day cv_BoutLength_Night cv_BoutNumber_Day cv_BoutNumber_Night cv_SleepLength_Day cv_SleepLength_Night cv_WakingActivity mn_BoutLength_Day mn_BoutLength_Night mn_BoutNumber_Day mn_BoutNumber_Night mn_SleepLength_Day mn_SleepLength_Night mn_WakingActivity | Sleep Behaviour | Curated |
2012-12-31 | Roel Bevers | |
| Harrison et al., 2020 The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster [10.1186/s12864-020-6739-1][FBrf0245603] |
300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 Carried Censored Deaths Flag1 Flag2 N NWMRC_Block Treatment Wavelength alive consumed food lifespan line.weight number.of.flies time.on.dye time.without.dye treatment | Resistance Metabolism | Under curation |
2020-11-30 | romain.rochepeau | |
| Chi et al., 2021 RNA-binding protein syncrip regulates starvation-induced hyperactivity in adult Drosophila [10.1371/journal.pgen.1009396][FBrf0248324] |
Baseline_mean Baseline_sem DA_mean DA_sem Starvation Resistance | Behaviour | Under curation |
2021-02-21 | romain.rochepeau | |
| Najarro et al., 2015 Identifying Loci Contributing to Natural Variation in Xenobiotic Resistance in Drosophila [10.1371/journal.pgen.1005663][FBrf0230275] |
Lifespan_Caffeine | Resistance Toxicity | Curated |
2015-11-29 | Roel Bevers | |
| Zhou et al., 2016 The Genetic Basis for Variation in Sensitivity to Lead Toxicity in Drosophila melanogaster [10.1289/ehp.1510513][FBrf0233045] |
gp_Dev_Time_Lead gp_Viability_Lead mn_Dev_Time mn_Dev_Time_Lead mn_Tot_Activity mn_Tot_Activity_Lead mn_Viability mn_Viability_Lead | Toxicity Life history traits | Curated |
2016-06-30 | Roel Bevers | |
| Mitchell et al., 2017 α-amanitin resistance in Drosophila melanogaster: A genome-wide association approach [10.1371/journal.pone.0173162][FBrf0234898] |
LC50_Alpha_Amanitin Surv_AAmanitin_0_2ug Surv_AAmanitin_2ug | Resistance Toxicity | Curated |
2017-02-26 | Roel Bevers | |
| Morgante et al., 2015 Genetic Architecture of Micro-Environmental Plasticity in Drosophila melanogaster [10.1038/srep09785][FBrf0228381] |
ChillComaRec StartleRes StarvationRes sd_ChillComaRec sd_StartleRes sd_StarvationRes se_ChillComaRec se_StartleRes se_StarvationRes | Resistance Behaviour Locomotion | Curated |
2015-09-21 | Roel Bevers | |
| Campbell et al., 2019 Genome-Wide Association Analysis of Anoxia Tolerance in Drosophila melanogaster [10.1534/g3.119.400421][FBrf0243370] |
Mean SE Variance | Resistance | Under curation |
2019-08-31 | romain.rochepeau | |
| Garlapow et al., 2015 Quantitative Genetics of Food Intake in Drosophila melanogaster [10.1371/journal.pone.0138129][FBrf0229641] |
Food_Intake | Metabolism Nutrition Behaviour | Curated |
2015-09-15 | Roel Bevers | |
| Huang et al., 2020 Context-dependent genetic architecture of Drosophila life span [10.1371/journal.pbio.3000645][FBrf0245198] |
Lifespan_18C Lifespan_25C Lifespan_28C sd_Lifespan_Env_18 sd_Lifespan_Env_25 sd_Lifespan_Env_28 | Ageing Life history traits Evolution | Curated |
2020-03-04 | Roel Bevers | |
| Montgomery et al., 2014 Genome-Wide Association Analysis of Tolerance to Methylmercury Toxicity in Drosophila Implicates Myogenic and Neuromuscular Developmental Pathways [10.1371/journal.pone.0110375][FBrf0226648] |
idx_Surv_10MeHg idx_Surv_10MeHg_CAFF idx_Surv_15MeHg idx_Surv_5MeHg idx_Surv_cum_MeHg pc_Surv_MeHg_0 pc_Surv_MeHg_0_CAFF pc_Surv_MeHg_10 pc_Surv_MeHg_10_CAFF pc_Surv_MeHg_15 pc_Surv_MeHg_5 | Fecundity Resistance Toxicity | Curated |
2014-10-30 | Roel Bevers | |
| Spierer et al., 2021 Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila [10.1371/journal.pgen.1008887][FBrf0248437] |
Flight phenotype score | Behaviour | Under curation |
2021-03-17 | romain.rochepeau | |
| Lafuente et al., 2018 Genetic basis of thermal plasticity variation in Drosophila melanogasterbody size [10.1101/268201] |
Body part Length (mm) Temperature | Appearance | Under curation |
2018-03-06 | romain.rochepeau | |
| Patel et al., 2021 Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel [10.1016/j.heliyon.2021.e07153][FBrf0249297] |
Average Lifespan | Life history traits | Under curation |
2021-05-31 | romain.rochepeau | |
| Unckless et al., 2015 A Genome-Wide Association Study for Nutritional Indices in Drosophila [10.1534/g3.114.016477][FBrf0227710] |
PC1_Nutri_Score_High PC1_Nutri_Score_Low PC2_Nutri_Score_High PC2_Nutri_Score_Low PC3_Nutri_Score_High PC3_Nutri_Score_Low PC4_Nutri_Score_High PC4_Nutri_Score_Low PC5_Nutri_Score_High PC5_Nutri_Score_Low mn_Glucose_HighDiet mn_Glucose_LowDiet mn_Glucose_Pooled mn_Glycerol_HighDiet mn_Glycerol_LowDiet mn_Glycerol_Pooled mn_Glycogen_HighDiet mn_Glycogen_LowDiet mn_Glycogen_Pooled mn_Protein_HighDiet mn_Protein_LowDiet mn_Protein_Pooled mn_Triglyceri_HiDiet mn_Triglyceri_LoDiet mn_Triglyceride_Pool mn_Weight_HighDiet mn_Weight_LowDiet mn_Weight_PooledDiet | Nutrition Life history traits Metabolism | Curated |
2015-02-28 | Roel Bevers | |
| Bonfini et al., 2021 Multiscale analysis reveals that diet-dependent midgut plasticity emerges from alterations in both stem cell niche coupling and enterocyte size [10.7554/elife.64125] |
Gut_Number additional_code alias anteriorLength anteriorwidth block code diet image middleLength posteriorLength posteriorwidth totalLength | Development Organ Size Metabolism | Under curation |
2021-09-22 | romain.rochepeau | |
| Arya et al., 2015 The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster [10.1093/chemse/bjv001][FBrf0228128] |
mn_Resp_1_Acetophen mn_Resp_1_Hexanol mn_Resp_2_Heptanone mn_Resp_2_PhenylEthy mn_Resp_Benzaldehyde mn_Resp_Citral mn_Resp_EthylAcetate mn_Resp_EthylButyrat mn_Resp_Eugenol mn_Resp_Helional mn_Resp_Hexanal mn_Resp_I_Carvone mn_Resp_MethylSalicy mn_Resp_d_Carvone | Olfactory Sensory Behaviour | Curated |
2015-04-30 | Roel Bevers | |
| Ørsted et al., 2017 Environmental variation partitioned into separate heritable components [10.1111/evo.13391][FBrf0237717] |
CTmin 23C Mean CTmin 23C SE Inversion_2L_t Inversion_2R_NS Inversion_3R_K Inversion_3R_Mo Inversion_3R_P V.AE Mean V.AE SE V.WE Mean V.WE SE V.plast Mean V.plast SE V.v.plast Mean V.v.plast SE WolbachiaStatus grp | Resistance Genome architecture | Under curation |
2017-12-31 | romain.rochepeau | |
| Rohde et al., 2018 Functional Validation of Candidate Genes Detected by Genomic Feature Models [10.1534/g3.118.200082][FBrf0238818] |
Mean | Behaviour | Under curation |
2018-04-30 | romain.rochepeau | |
| Evangelou et al., 2018 Unpredictable effects of the genetic background of transgenic lines in physiological quantitative traits [10.1101/494419] |
Branching_O2_5pc Fecal_PH_PAeruginosa Fecundity Survival_Paeruginosa midgut_mitosis_PA pc_Defecation_Paerug | Metabolism Life history traits | Under curation |
2018-12-12 | romain.rochepeau | |
| Huang et al., 2014 Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines [10.1101/gr.171546.113][FBrf0225536] |
Inversion_2L_t Inversion_2R_NS Inversion_2R_Y1 Inversion_2R_Y2 Inversion_2R_Y3 Inversion_2R_Y4 Inversion_2R_Y5 Inversion_2R_Y6 Inversion_2R_Y7 Inversion_3L_M Inversion_3L_P Inversion_3L_Y Inversion_3R_C Inversion_3R_K Inversion_3R_Mo Inversion_3R_P SegregVariants_2L SegregVariants_2R SegregVariants_3L SegregVariants_3R SegregVariants_X TotalVariants_2L TotalVariants_2R TotalVariants_3L TotalVariants_3R TotalVariants_X WolbachiaStatus mn_GenomeSize pc_SegregVariants_2L pc_SegregVariants_2R pc_SegregVariants_3L pc_SegregVariants_3R pc_SegregVariants_X se_GenomeSize | Genome architecture Microbiota | Curated |
2014-06-30 | Roel Bevers |