DGRPool

Description	URL template	URL examples
Gene-centric page	https://dgrpool.epfl.ch/genes?q=[GENE_SYMBOL\|GENE_NAME\|FLYBASE_IDENTIFIER]	https://dgrpool.epfl.ch/genes?q=Arfip https://dgrpool.epfl.ch/genes?q=Arfaptin https://dgrpool.epfl.ch/genes?q=FBgn0037884
Variant-centric page	https://dgrpool.epfl.ch/variants?q=[VARIANT_IDENTIFIER\|RANGE]&assembly=[dm3\|dm6]	https://dgrpool.epfl.ch/variants?q=3R_1007_SNP&assembly=dm3 https://dgrpool.epfl.ch/variants?q=2R:4600000-4620000&assembly=dm3

Get data associated to a DGRP line


        https://dgrpool.epfl.ch/dgrp_line/#ID.json

For example:


        https://dgrpool.epfl.ch/dgrp_lines/230.json

or the list of all DGRP lines:


        https://dgrpool.epfl.ch/dgrp_lines.json

The available fields:

Field name	Type	Description
id	integer	The DGRP line ID
name	text	The name of the DGRP line (e.g. DGRP_398)
nber_studies	integer	Number of associated studies
nber_phenotypes	integer	Number of associated phenotypes
fbsn	text	FlyBase identifier
bloomington_id	integer	Bloomington ID
dgrp_status	text	DGRP status (Unavailable, Genotyped, Available)
created_at	Date of creation
updated_at	timestamp	Date of modification

Get data associated to a study


	https://dgrpool.epfl.ch/studies/#ID.json

For example:


	https://dgrpool.epfl.ch/studies/22.json

or the list of all studies:


	https://dgrpool.epfl.ch/studies.json

The available fields:

Field name	Type	Description
id	integer	The study ID
title	text	The title of the related article
authors_json	text	List of authors in JSON format
abstract	text	Abstract of the related article
journal	text	Journal of the related article
doi	text	DOI of the related article
created_at	Date of creation
updated_at	timestamp	Date of modification
status	text	Status of the study (accepted, integrated (curated), rejected)
first_author	text	Last name of the first author of the study
volume	text	Journal volume
year	text	Journal issue
published_at	timestamp	Date of publication of the study
comment	text	DGRPool comment about the study
flybase_ref	text	Flybase reference for this study
description	text	Description of the study
repository_identifiers	text	List of identifiers to repositories
phenotype_ids	text	JSON array of the phenotype IDs

Phenotype data are downloadable throught the following GET path:


       https://dgrpool.epfl.ch/phenotypes/#ID.json

For example:


      https://dgrpool.epfl.ch/phenotypes/2797.json

or the list of all non-obsolete phenotypes:


	https://dgrpool.epfl.ch/phenotypes.json?no_obsolete=1

or the list of all phenotypes from curated studies:


        https://dgrpool.epfl.ch/phenotypes.json?only_curated_studies=1

or the list of all phenotypes (including obsolete ones and from non-curated studies):


        https://dgrpool.epfl.ch/phenotypes.json?all=1

The available fields:

Field name	Type	Description
id	integer	The phenotype ID
study_id	integer	The study ID
name	string	The phenotype name
is_summary	boolean	True if the original data is of a summary type (only one value per DGRP line and sex), or False in the opposite case (many samples per DGRP line and sex)
is_continuous	boolean	True if the data are numerical and continuous
is_numeric	boolean	True if the data are numeric
created_at	timestamp	Date of creation
updated_at	timestamp	Date of modification
summary_type	string	Type of the summary if is_summary is true
unit	string	The unit in which the data are expressed
original_data	hash	Original data by DGRP line and sex (only for the individual phenotype request)
summary_data	hash	Summary data by type of summary data, DGRP line and sex (only for the individual phenotype request)
url	string	The URL where to download this resource