Comments from curator
Assignments to taxonomic ranks were performed in QIIME using the
Greengenes database (class, order, family, genus, species). Operational taxonomic units (OTUs) were binned based on QIIME taxonomic assignments during correlation analysis and numbered from OTU001 to OTU176. It resulted in 76 OTUs (thus 76 phenotypes) after filtering.
Phenotyping data were extracted from Table S1B in
zam999116867sd2.xlsx file in Supplemental material section.
I’ve only included Table S1B, due to stricter selection/cutoffs than S1A. S1B was excluded due to the absence of all OTUs. Of note, this data only has 79 lines, while there are 126 lines described in Supp. Table S2.
The ratio data per 5 family types (Aceto., Lacto., Xantho., Coma., Other) were computed by the curator, using Table S1B in order to reproduce data used in Figure 1A.
The phenotyping data for nutritional traits (Glucose, ...), were not available, so we asked the authors, who provided it. They were added and contain an additional 30 lines (i.e. for a total of 109 lines, still not reaching the 126 lines described in Supp. Table S2).
