DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.571e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001056
In_3R_Mo	0.021025

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	6.2984	0.0429
In_2R_NS	4.7659	0.0923
In_3R_Mo	3.708	0.0542

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2077 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10895995	3L_10895995_SNP [dm3] 3L_10902895_SNP [dm6]	G	A	1.556e^-6	0.713	INTERGENIC
3L	10896006	3L_10896006_SNP [dm3] 3L_10902906_SNP [dm6]	A	C	2.055e^-6	0.713	INTERGENIC
2R	5187924	2R_5187924_DEL [dm3] 2R_9300419_DEL [dm6]	TT	T	4.376e^-6	0.713	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	4.811e^-6	0.713	INTRON dally
3L	10115869	3L_10115869_SNP [dm3] 3L_10122769_SNP [dm6]	A	G	5.360e^-6	0.713	INTRON dpr6
2L	20501211	2L_20501211_SNP [dm3] 2L_20501211_SNP [dm6]	A	T	5.706e^-6	0.713	INTERGENIC
2L	8875224	2L_8875224_SNP [dm3] 2L_8875224_SNP [dm6]	C	T	6.188e^-6	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17319938	3L_17319938_SNP [dm3] 3L_17326838_SNP [dm6]	C	A	6.259e^-6	0.713	DOWNSTREAM Or74a INTERGENIC
2L	4710282	2L_4710282_SNP [dm3] 2L_4710282_SNP [dm6]	C	T	7.163e^-6	0.713	INTRON CG34351
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	7.207e^-6	0.713	INTERGENIC
3L	8873547	3L_8873547_SNP [dm3] 3L_8880447_SNP [dm6]	G	A	8.524e^-6	0.713	INTRON dally
3R	10231130	3R_10231130_SNP [dm3] 3R_14405408_SNP [dm6]	G	A	9.137e^-6	0.713	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
2L	13874082	2L_13874082_SNP [dm3] 2L_13874082_SNP [dm6]	A	T	1.061e^-5	0.713	INTRON CenG1A
2R	11973345	2R_11973345_SNP [dm3] 2R_16085840_SNP [dm6]	A	C	1.078e^-5	0.713	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10266273	3L_10266273_SNP [dm3] 3L_10273173_SNP [dm6]	G	C	1.207e^-5	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	7299023	3L_7299023_SNP [dm3] 3L_7305923_SNP [dm6]	C	T	1.372e^-5	0.713	INTRON unc-13-4A
3R	25509567	3R_25509567_SNP [dm3] 3R_29683845_SNP [dm6]	T	G	1.380e^-5	0.713	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
2R	10091601	2R_10091601_MNP [dm3] 2R_14204096_MNP [dm6]	AGA	TCT	1.442e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7170821	2R_7170821_SNP [dm3] 2R_11283316_SNP [dm6]	G	A	1.485e^-5	0.713	SYNONYMOUS_CODING CG9062 UPSTREAM CG13220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	3960282	3L_3960282_SNP [dm3] 3L_3960282_SNP [dm6]	G	C	1.531e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3L	3960289	3L_3960289_SNP [dm3] 3L_3960289_SNP [dm6]	G	C	1.531e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2L	2918965	2L_2918965_SNP [dm3] 2L_2918965_SNP [dm6]	T	A	1.698e^-5	0.713	INTRON lilli
3L	17323366	3L_17323366_SNP [dm3] 3L_17330266_SNP [dm6]	G	A	1.823e^-5	0.713	INTERGENIC
2L	19239420	2L_19239420_SNP [dm3] 2L_19239420_SNP [dm6]	T	A	1.924e^-5	0.713	INTERGENIC
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	2.009e^-5	0.713	INTRON AGO3	transposable element FlyBase
2L	17255535	2L_17255535_SNP [dm3] 2L_17255535_SNP [dm6]	T	G	2.026e^-5	0.713	INTRON beat-IIIc
2L	17255537	2L_17255537_SNP [dm3] 2L_17255537_SNP [dm6]	T	A	2.026e^-5	0.713	INTRON beat-IIIc
3L	3960284	3L_3960284_SNP [dm3] 3L_3960284_SNP [dm6]	T	G	2.058e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3R	18802106	3R_18802106_SNP [dm3] 3R_22976384_SNP [dm6]	A	C	2.194e^-5	0.713	UPSTREAM CG17244 INTERGENIC
X	4549688	X_4549688_SNP [dm3] X_4655655_SNP [dm6]	T	A	2.210e^-5	0.713	INTRON Cbp80
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	2.243e^-5	0.713	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10091586	2R_10091586_INS [dm3] 2R_14204081_INS [dm6]	G	GA	2.262e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	15568050	2R_15568050_SNP [dm3] 2R_19680545_SNP [dm6]	A	T	2.285e^-5	0.713	DOWNSTREAM CG15127 INTERGENIC
3L	3960299	3L_3960299_SNP [dm3] 3L_3960299_SNP [dm6]	A	T	2.324e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3L	3960303	3L_3960303_SNP [dm3] 3L_3960303_SNP [dm6]	A	T	2.324e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2R	17886746	2R_17886746_SNP [dm3] 2R_21999241_SNP [dm6]	A	G	2.489e^-5	0.713	INTRON CG34370
3R	22989578	3R_22989578_SNP [dm3] 3R_27163856_SNP [dm6]	T	A	2.757e^-5	0.713	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
3L	7863797	3L_7863797_SNP [dm3] 3L_7870697_SNP [dm6]	G	C	2.782e^-5	0.713	INTRON CG32365
2R	9704817	2R_9704817_SNP [dm3] 2R_13817312_SNP [dm6]	C	T	2.835e^-5	0.713	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
2L	14545701	2L_14545701_SNP [dm3] 2L_14545701_SNP [dm6]	G	A	2.839e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10091608	2R_10091608_DEL [dm3] 2R_14204103_DEL [dm6]	CCA	TG	2.924e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091709	2R_10091709_SNP [dm3] 2R_14204204_SNP [dm6]	A	G	2.924e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs
2R	16892823	2R_16892823_SNP [dm3] 2R_21005318_SNP [dm6]	T	A	2.937e^-5	0.713	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
3L	4598860	3L_4598860_SNP [dm3] 3L_4598860_SNP [dm6]	T	A	2.944e^-5	0.713	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
2R	6021890	2R_6021890_SNP [dm3] 2R_10134385_SNP [dm6]	G	C	2.944e^-5	0.713	UPSTREAM gem INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17471364	2L_17471364_SNP [dm3] 2L_17471364_SNP [dm6]	A	G	2.980e^-5	0.713	UPSTREAM Sgt INTRON BicD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4710330	2L_4710330_SNP [dm3] 2L_4710330_SNP [dm6]	C	T	3.198e^-5	0.713	INTRON CG34351
2R	15568105	2R_15568105_SNP [dm3] 2R_19680600_SNP [dm6]	C	A	3.241e^-5	0.713	DOWNSTREAM CG15127 INTERGENIC
3R	18541217	3R_18541217_SNP [dm3] 3R_22715495_SNP [dm6]	A	C	3.243e^-5	0.713	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22392305	3R_22392305_SNP [dm3] 3R_26566583_SNP [dm6]	G	C	3.265e^-5	0.713	SPLICE_SITE_REGION scrib INTRON scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h
3R	18802166	3R_18802166_SNP [dm3] 3R_22976444_SNP [dm6]	T	C	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
3R	18802252	3R_18802252_SNP [dm3] 3R_22976530_SNP [dm6]	A	C	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
3R	18802266	3R_18802266_SNP [dm3] 3R_22976544_SNP [dm6]	C	A	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
X	15285657	X_15285657_SNP [dm3] X_15391624_SNP [dm6]	G	A	3.382e^-5	0.713	INTRON Cngl
2L	17255512	2L_17255512_SNP [dm3] 2L_17255512_SNP [dm6]	G	A	3.424e^-5	0.713	INTRON beat-IIIc
3L	16228828	3L_16228828_SNP [dm3] 3L_16235728_SNP [dm6]	G	A	3.592e^-5	0.713	SYNONYMOUS_CODING l_3_72Dp
3L	1040033	3L_1040033_SNP [dm3] 3L_1040033_SNP [dm6]	G	A	3.636e^-5	0.713	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14166263	2R_14166263_SNP [dm3] 2R_18278758_SNP [dm6]	T	C	3.818e^-5	0.713	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
2L	20503081	2L_20503081_SNP [dm3] 2L_20503081_SNP [dm6]	G	T	3.866e^-5	0.713	INTERGENIC
X	4549691	X_4549691_SNP [dm3] X_4655658_SNP [dm6]	T	A	3.923e^-5	0.713	INTRON Cbp80
X	4549692	X_4549692_INS [dm3] X_4655659_INS [dm6]	T	TG	3.923e^-5	0.713	INTRON Cbp80
2R	14704169	2R_14704169_SNP [dm3] 2R_18816664_SNP [dm6]	G	A	3.945e^-5	0.713	UPSTREAM CG15096 INTERGENIC
3L	5679309	3L_5679309_SNP [dm3] 3L_5686209_SNP [dm6]	G	A	4.028e^-5	0.713	INTRON sif
3L	9282952	3L_9282952_SNP [dm3] 3L_9289852_SNP [dm6]	G	C	4.095e^-5	0.713	INTERGENIC
2L	17255531	2L_17255531_INS [dm3] 2L_17255531_INS [dm6]	T	TT	4.103e^-5	0.713	INTRON beat-IIIc
3L	5268130	3L_5268130_SNP [dm3] 3L_5275030_SNP [dm6]	G	T	4.197e^-5	0.713	INTRON shep	TF binding site BDTNP1_TFBS_twi
3R	8169826	3R_8169826_SNP [dm3] 3R_12344104_SNP [dm6]	G	T	4.348e^-5	0.713	INTERGENIC
2L	1550988	2L_1550988_SNP [dm3] 2L_1550988_SNP [dm6]	C	A	4.374e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14899339	3L_14899339_SNP [dm3] 3L_14906239_SNP [dm6]	C	A	4.394e^-5	0.713	INTRON DCX-EMAP
2L	16381249	2L_16381249_SNP [dm3] 2L_16381249_SNP [dm6]	C	T	4.395e^-5	0.713	INTERGENIC
3L	17327210	3L_17327210_SNP [dm3] 3L_17334110_SNP [dm6]	T	A	4.576e^-5	0.713	EXON CR44563
X	4979384	X_4979384_INS [dm3] X_5085351_INS [dm6]	T	TG	4.738e^-5	0.713	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23035609	3R_23035609_SNP [dm3] 3R_27209887_SNP [dm6]	G	A	4.817e^-5	0.713	INTERGENIC
2R	7393068	2R_7393068_SNP [dm3] 2R_11505563_SNP [dm6]	G	T	4.882e^-5	0.713	INTRON inv
2R	7393078	2R_7393078_INS [dm3] 2R_11505573_INS [dm6]	T	TT	4.882e^-5	0.713	INTRON inv
2L	17255501	2L_17255501_SNP [dm3] 2L_17255501_SNP [dm6]	G	A	5.063e^-5	0.713	INTRON beat-IIIc
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	5.161e^-5	0.713	INTRON Eip75B
3L	3960446	3L_3960446_SNP [dm3] 3L_3960446_SNP [dm6]	G	C	5.163e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2R	15568400	2R_15568400_SNP [dm3] 2R_19680895_SNP [dm6]	T	G	5.169e^-5	0.713	UTR_3_PRIME CG15127
3L	16228918	3L_16228918_SNP [dm3] 3L_16235818_SNP [dm6]	G	A	5.175e^-5	0.713	SYNONYMOUS_CODING l_3_72Dp
3R	25490028	3R_25490028_SNP [dm3] 3R_29664306_SNP [dm6]	T	C	5.234e^-5	0.713	UPSTREAM ppk21 INTERGENIC
X	3939086	X_3939086_DEL [dm3] X_4045053_DEL [dm6]	TT	T	5.286e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16703578	2L_16703578_SNP [dm3] 2L_16703578_SNP [dm6]	T	G	5.343e^-5	0.713	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17303620	2R_17303620_SNP [dm3] 2R_21416115_SNP [dm6]	C	T	5.361e^-5	0.713	INTRON Sdc
2L	17528743	2L_17528743_SNP [dm3] 2L_17528743_SNP [dm6]	A	C	5.385e^-5	0.713	NON_SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
3R	13473807	3R_13473807_SNP [dm3] 3R_17648085_SNP [dm6]	T	C	5.554e^-5	0.713	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	5.587e^-5	0.713	INTRON sty
3L	15454543	3L_15454543_SNP [dm3] 3L_15461443_SNP [dm6]	A	C	5.595e^-5	0.713	INTERGENIC
X	10883491	X_10883491_SNP [dm3] X_10989458_SNP [dm6]	G	T	5.613e^-5	0.713	INTRON CG42339
3L	11096215	3L_11096215_SNP [dm3] 3L_11103115_SNP [dm6]	G	T	5.795e^-5	0.713	UPSTREAM Elo68alpha DOWNSTREAM CG32071 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26569833	3R_26569833_SNP [dm3] 3R_30744111_SNP [dm6]	G	A	5.920e^-5	0.713	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3R	26569837	3R_26569837_SNP [dm3] 3R_30744115_SNP [dm6]	T	G	5.920e^-5	0.713	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3L	9868412	3L_9868412_SNP [dm3] 3L_9875312_SNP [dm6]	A	G	5.946e^-5	0.713	UPSTREAM CR45406 INTERGENIC
3L	3974743	3L_3974743_INS [dm3] 3L_3974743_INS [dm6]	G	GTCTTGG	5.951e^-5	0.713	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26639905	3R_26639905_SNP [dm3] 3R_30814183_SNP [dm6]	G	C	6.015e^-5	0.713	INTRON cindr
2L	10297946	2L_10297946_SNP [dm3] 2L_10297946_SNP [dm6]	G	A	6.116e^-5	0.713	INTRON CR44968 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	7299028	3L_7299028_SNP [dm3] 3L_7305928_SNP [dm6]	T	C	6.153e^-5	0.713	INTRON unc-13-4A
2R	15048933	2R_15048933_SNP [dm3] 2R_19161428_SNP [dm6]	A	G	6.183e^-5	0.713	INTRON ena
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	6.212e^-5	0.713	INTRON Sema-2a
X	1455065	X_1455065_SNP [dm3] X_1561032_SNP [dm6]	G	T	6.263e^-5	0.713	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11378345	3L_11378345_SNP [dm3] 3L_11385245_SNP [dm6]	G	T	6.477e^-5	0.713	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26569284	3R_26569284_SNP [dm3] 3R_30743562_SNP [dm6]	C	A	6.746e^-5	0.713	NON_SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10266108	3L_10266108_SNP [dm3] 3L_10273008_SNP [dm6]	T	A	6.837e^-5	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	26419331	3R_26419331_SNP [dm3] 3R_30593609_SNP [dm6]	G	A	6.967e^-5	0.713	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11941921	2L_11941921_DEL [dm3] 2L_11941921_DEL [dm6]	TATATTCTCAT...	T	6.972e^-5	0.713	INTERGENIC	regulatory region REDfly_CRMs
3L	2175085	3L_2175085_SNP [dm3] 3L_2175085_SNP [dm6]	T	G	7.133e^-5	0.713	UPSTREAM CG15820 INTERGENIC
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	7.230e^-5	0.713	INTRON dpr
3L	4268564	3L_4268564_SNP [dm3] 3L_4268564_SNP [dm6]	G	A	7.239e^-5	0.713	INTRON CG1273
3L	4268579	3L_4268579_SNP [dm3] 3L_4268579_SNP [dm6]	A	T	7.239e^-5	0.713	INTRON CG1273
X	2605989	X_2605989_SNP [dm3] X_2711956_SNP [dm6]	T	G	7.292e^-5	0.713	SYNONYMOUS_CODING CG2685 DOWNSTREAM CG2681	TF binding site mE1_TFBS_chinmo
3R	21438473	3R_21438473_SNP [dm3] 3R_25612751_SNP [dm6]	T	A	7.383e^-5	0.713	INTRON Npl4
3R	16348130	3R_16348130_SNP [dm3] 3R_20522408_SNP [dm6]	T	C	7.421e^-5	0.713	INTERGENIC
3R	21368046	3R_21368046_SNP [dm3] 3R_25542324_SNP [dm6]	A	G	7.492e^-5	0.713	INTRON msi
2R	16702726	2R_16702726_SNP [dm3] 2R_20815221_SNP [dm6]	C	T	7.515e^-5	0.713	INTERGENIC
3L	9587525	3L_9587525_SNP [dm3] 3L_9594425_SNP [dm6]	C	G	7.583e^-5	0.713	UTR_3_PRIME CG42673 INTRON CG42673
2L	9653768	2L_9653768_SNP [dm3] 2L_9653768_SNP [dm6]	T	A	7.666e^-5	0.713	SPLICE_SITE_REGION Apoltp INTRON Apoltp
2R	5144098	2R_5144098_SNP [dm3] 2R_9256593_SNP [dm6]	G	T	7.867e^-5	0.713	UPSTREAM Pkn INTRON Pkn
3R	25490098	3R_25490098_SNP [dm3] 3R_29664376_SNP [dm6]	T	A	7.957e^-5	0.713	UPSTREAM ppk21 INTERGENIC
3L	19698802	3L_19698802_INS [dm3] 3L_19705702_INS [dm6]	A	AG	7.988e^-5	0.713	INTRON serp
3L	19698805	3L_19698805_DEL [dm3] 3L_19705705_DEL [dm6]	ACACTTTTTATT...	A	7.988e^-5	0.713	INTRON serp
3L	19698818	3L_19698818_SNP [dm3] 3L_19705718_SNP [dm6]	C	G	7.988e^-5	0.713	INTRON serp
3L	1039976	3L_1039976_SNP [dm3] 3L_1039976_SNP [dm6]	T	A	8.216e^-5	0.713	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10715654	3L_10715654_SNP [dm3] 3L_10722554_SNP [dm6]	A	T	8.248e^-5	0.713	INTERGENIC
3R	9821265	3R_9821265_SNP [dm3] 3R_13995543_SNP [dm6]	G	C	8.317e^-5	0.713	INTRON rdx
2R	16428360	2R_16428360_SNP [dm3] 2R_20540855_SNP [dm6]	C	G	8.462e^-5	0.713	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13683436	2R_13683436_SNP [dm3] 2R_17795931_SNP [dm6]	A	T	8.514e^-5	0.713	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8100048	X_8100048_SNP [dm3] X_8206015_SNP [dm6]	T	C	8.587e^-5	0.713	INTRON sdt
3L	8199668	3L_8199668_SNP [dm3] 3L_8206568_SNP [dm6]	T	A	8.597e^-5	0.713	INTERGENIC
2R	17721362	2R_17721362_SNP [dm3] 2R_21833857_SNP [dm6]	A	G	8.618e^-5	0.713	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3L	4965994	3L_4965994_SNP [dm3] 3L_4965994_SNP [dm6]	T	G	8.621e^-5	0.713	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	8242266	3L_8242266_SNP [dm3] 3L_8249166_SNP [dm6]	A	T	8.748e^-5	0.713	INTRON Dscam4
3L	8242334	3L_8242334_SNP [dm3] 3L_8249234_SNP [dm6]	C	A	8.748e^-5	0.713	INTRON Dscam4
3L	2922088	3L_2922088_SNP [dm3] 3L_2922088_SNP [dm6]	G	A	8.870e^-5	0.713	INTRON Shab
2L	3120627	2L_3120627_SNP [dm3] 2L_3120627_SNP [dm6]	G	C	8.895e^-5	0.713	INTRON toc
3L	7863864	3L_7863864_SNP [dm3] 3L_7870764_SNP [dm6]	G	A	8.952e^-5	0.713	INTRON CG32365
X	15285745	X_15285745_SNP [dm3] X_15391712_SNP [dm6]	A	T	9.051e^-5	0.713	INTRON Cngl
X	15285765	X_15285765_SNP [dm3] X_15391732_SNP [dm6]	G	A	9.051e^-5	0.713	INTRON Cngl
3R	13475405	3R_13475405_SNP [dm3] 3R_17649683_SNP [dm6]	C	T	9.423e^-5	0.713	INTRON CG14322
3L	3960699	3L_3960699_SNP [dm3] 3L_3960699_SNP [dm6]	C	T	9.438e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3L	7299038	3L_7299038_SNP [dm3] 3L_7305938_SNP [dm6]	T	C	9.474e^-5	0.713	INTRON unc-13-4A
3L	4966025	3L_4966025_SNP [dm3] 3L_4966025_SNP [dm6]	T	A	9.681e^-5	0.713	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	4966030	3L_4966030_SNP [dm3] 3L_4966030_SNP [dm6]	A	C	9.681e^-5	0.713	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	4966033	3L_4966033_SNP [dm3] 3L_4966033_SNP [dm6]	G	A	9.681e^-5	0.713	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	11378360	3L_11378360_SNP [dm3] 3L_11385260_SNP [dm6]	A	G	9.844e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1544546	2L_1544546_SNP [dm3] 2L_1544546_SNP [dm6]	C	A	9.974e^-5	0.713	INTERGENIC
3R	9623603	3R_9623603_SNP [dm3] 3R_13797881_SNP [dm6]	C	A	1.001e^-4	0.713	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18795543	2R_18795543_SNP [dm3] 2R_22908020_SNP [dm6]	G	A	1.023e^-4	0.713	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17774480	X_17774480_SNP [dm3] X_17880447_SNP [dm6]	T	A	1.033e^-4	0.713	INTRON mnb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20619343	3R_20619343_SNP [dm3] 3R_24793621_SNP [dm6]	A	T	1.033e^-4	0.713	INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7863802	3L_7863802_SNP [dm3] 3L_7870702_SNP [dm6]	G	A	1.040e^-4	0.713	INTRON CG32365
3L	18007693	3L_18007693_SNP [dm3] 3L_18014593_SNP [dm6]	G	A	1.056e^-4	0.713	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11391875	3L_11391875_SNP [dm3] 3L_11398775_SNP [dm6]	T	A	1.061e^-4	0.713	DOWNSTREAM CG44362 INTERGENIC
3L	11391887	3L_11391887_SNP [dm3] 3L_11398787_SNP [dm6]	C	A	1.061e^-4	0.713	DOWNSTREAM CG44362 INTERGENIC
X	8986024	X_8986024_SNP [dm3] X_9091991_SNP [dm6]	A	G	1.065e^-4	0.713	SYNONYMOUS_CODING CG7033 DOWNSTREAM mir-13b-2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5484415	3L_5484415_SNP [dm3] 3L_5491315_SNP [dm6]	C	T	1.066e^-4	0.713	INTERGENIC
3L	19689748	3L_19689748_DEL [dm3] 3L_19696648_DEL [dm6]	ATACTTATAAGTTCA...	A	1.068e^-4	0.713	INTERGENIC
X	18814039	X_18814039_SNP [dm3] X_18920006_SNP [dm6]	A	G	1.070e^-4	0.713	INTERGENIC
3R	15819857	3R_15819857_SNP [dm3] 3R_19994135_SNP [dm6]	C	T	1.074e^-4	0.713	INTRON Hs6st
3R	3495841	3R_3495841_SNP [dm3] 3R_7670119_SNP [dm6]	T	A	1.077e^-4	0.713	INTRON Nlg1
2R	3744011	2R_3744011_SNP [dm3] 2R_7856506_SNP [dm6]	C	T	1.087e^-4	0.713	INTRON Dgk
2L	17800224	2L_17800224_SNP [dm3] 2L_17800224_SNP [dm6]	T	C	1.090e^-4	0.713	INTRON CadN2
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	1.098e^-4	0.713	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	15397471	2R_15397471_SNP [dm3] 2R_19509966_SNP [dm6]	A	C	1.098e^-4	0.713	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	6935078	2R_6935078_SNP [dm3] 2R_11047573_SNP [dm6]	A	G	1.099e^-4	0.713	INTRON luna
2L	5787460	2L_5787460_SNP [dm3] 2L_5787460_SNP [dm6]	G	A	1.101e^-4	0.713	INTRON CG9171
2R	7022480	2R_7022480_SNP [dm3] 2R_11134975_SNP [dm6]	G	A	1.112e^-4	0.713	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	10091605	2R_10091605_SNP [dm3] 2R_14204100_SNP [dm6]	A	T	1.114e^-4	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	11391993	3L_11391993_SNP [dm3] 3L_11398893_SNP [dm6]	T	A	1.118e^-4	0.713	INTERGENIC
2R	17231529	2R_17231529_SNP [dm3] 2R_21344024_SNP [dm6]	C	T	1.119e^-4	0.713	SYNONYMOUS_CODING CG15666
3R	26572949	3R_26572949_SNP [dm3] 3R_30747227_SNP [dm6]	T	G	1.132e^-4	0.713	UPSTREAM Npc2h & 1 other INTERGENIC
X	857530	X_857530_SNP [dm3] X_963497_SNP [dm6]	T	C	1.132e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5506171	2L_5506171_SNP [dm3] 2L_5506171_SNP [dm6]	T	C	1.138e^-4	0.713	INTERGENIC
3L	5484418	3L_5484418_SNP [dm3] 3L_5491318_SNP [dm6]	C	T	1.145e^-4	0.713	INTERGENIC
3R	20619004	3R_20619004_SNP [dm3] 3R_24793282_SNP [dm6]	T	G	1.148e^-4	0.713	INTRON Ets96B	TF binding site mE1_TFBS_cad
3R	16345232	3R_16345232_SNP [dm3] 3R_20519510_SNP [dm6]	C	A	1.154e^-4	0.713	INTERGENIC
3R	9845823	3R_9845823_SNP [dm3] 3R_14020101_SNP [dm6]	A	G	1.164e^-4	0.713	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12418027	2R_12418027_SNP [dm3] 2R_16530522_SNP [dm6]	G	A	1.177e^-4	0.713	INTRON Sema-2a
2L	15467447	2L_15467447_SNP [dm3] 2L_15467447_SNP [dm6]	T	C	1.180e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15039681	3L_15039681_INS [dm3] 3L_15046581_INS [dm6]	A	ATACTTTAATGGATGTA...	1.180e^-4	0.713	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2473889	3L_2473889_DEL [dm3] 3L_2473889_DEL [dm6]	TT	T	1.180e^-4	0.713	DOWNSTREAM CG16762 INTRON CG45186
3R	26419149	3R_26419149_SNP [dm3] 3R_30593427_SNP [dm6]	A	G	1.180e^-4	0.713	INTRON CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26419328	3R_26419328_SNP [dm3] 3R_30593606_SNP [dm6]	G	A	1.180e^-4	0.713	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4624452	2L_4624452_SNP [dm3] 2L_4624452_SNP [dm6]	T	A	1.183e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10417286	3L_10417286_SNP [dm3] 3L_10424186_SNP [dm6]	T	C	1.197e^-4	0.713	INTERGENIC
3L	17308246	3L_17308246_SNP [dm3] 3L_17315146_SNP [dm6]	C	A	1.199e^-4	0.713	DOWNSTREAM mir-219 INTERGENIC	TF binding site mE1_TFBS_cad
X	8523187	X_8523187_SNP [dm3] X_8629154_SNP [dm6]	A	T	1.201e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13805875	3R_13805875_INS [dm3] 3R_17980153_INS [dm6]	T	TCA	1.210e^-4	0.713	INTRON cpo
2L	4710564	2L_4710564_SNP [dm3] 2L_4710564_SNP [dm6]	A	G	1.231e^-4	0.713	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2L	5469975	2L_5469975_SNP [dm3] 2L_5469975_SNP [dm6]	G	A	1.234e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9163746	2L_9163746_SNP [dm3] 2L_9163746_SNP [dm6]	G	A	1.250e^-4	0.713	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC
2L	9163748	2L_9163748_SNP [dm3] 2L_9163748_SNP [dm6]	A	G	1.250e^-4	0.713	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC
3R	23446235	3R_23446235_SNP [dm3] 3R_27620513_SNP [dm6]	A	C	1.285e^-4	0.713	INTRON Tusp
2L	11819980	2L_11819980_SNP [dm3] 2L_11819980_SNP [dm6]	A	C	1.287e^-4	0.713	INTRON Pde1c
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	1.291e^-4	0.713	INTRON dpr
3R	24677888	3R_24677888_SNP [dm3] 3R_28852166_SNP [dm6]	C	G	1.292e^-4	0.713	INTRON spg
X	17569284	X_17569284_SNP [dm3] X_17675251_SNP [dm6]	C	T	1.294e^-4	0.713	INTRON chas
X	6198784	X_6198784_SNP [dm3] X_6304751_SNP [dm6]	G	A	1.298e^-4	0.713	SYNONYMOUS_CODING CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16458556	2R_16458556_SNP [dm3] 2R_20571051_SNP [dm6]	T	C	1.302e^-4	0.713	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17739998	2R_17739998_SNP [dm3] 2R_21852493_SNP [dm6]	T	G	1.304e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18242800	2L_18242800_SNP [dm3] 2L_18242800_SNP [dm6]	A	G	1.314e^-4	0.713	INTRON CG42750
3R	19613854	3R_19613854_SNP [dm3] 3R_23788132_SNP [dm6]	C	T	1.316e^-4	0.713	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9242641	3L_9242641_SNP [dm3] 3L_9249541_SNP [dm6]	A	G	1.319e^-4	0.713	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10805917	2R_10805917_SNP [dm3] 2R_14918412_SNP [dm6]	A	T	1.322e^-4	0.713	INTRON CG10249
3L	4839688	3L_4839688_SNP [dm3] 3L_4839688_SNP [dm6]	A	T	1.324e^-4	0.713	UTR_5_PRIME CG13707 INTRON CG13707
3L	2939273	3L_2939273_INS [dm3] 3L_2939273_INS [dm6]	C	CC	1.324e^-4	0.713	INTRON Shab
3L	2074698	3L_2074698_SNP [dm3] 3L_2074698_SNP [dm6]	C	G	1.326e^-4	0.713	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2L	9163753	2L_9163753_SNP [dm3] 2L_9163753_SNP [dm6]	T	C	1.328e^-4	0.713	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC
3L	3981908	3L_3981908_SNP [dm3] 3L_3981908_SNP [dm6]	G	T	1.332e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
2L	15652102	2L_15652102_SNP [dm3] 2L_15652102_SNP [dm6]	A	G	1.386e^-4	0.713	SPLICE_SITE_REGION CG4587 INTRON CG4587
3R	9623575	3R_9623575_SNP [dm3] 3R_13797853_SNP [dm6]	C	T	1.386e^-4	0.713	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3139044	2L_3139044_SNP [dm3] 2L_3139044_SNP [dm6]	C	A	1.393e^-4	0.713	INTRON toc
3R	25490267	3R_25490267_SNP [dm3] 3R_29664545_SNP [dm6]	C	G	1.412e^-4	0.713	UPSTREAM ppk21 INTERGENIC
3R	17497399	3R_17497399_SNP [dm3] 3R_21671677_SNP [dm6]	C	T	1.413e^-4	0.713	UTR_5_PRIME DNApol-alpha180 DOWNSTREAM CG31176	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
X	4748920	X_4748920_SNP [dm3] X_4854887_SNP [dm6]	A	G	1.431e^-4	0.713	INTRON CG42594
2L	18250700	2L_18250700_SNP [dm3] 2L_18250700_SNP [dm6]	G	T	1.432e^-4	0.713	UPSTREAM CG43406 INTRON CG42750
X	10094474	X_10094474_SNP [dm3] X_10200441_SNP [dm6]	A	C	1.432e^-4	0.713	INTRON CR44894
3R	22091590	3R_22091590_DEL [dm3] 3R_26265868_DEL [dm6]	AGGAACCCCCATCGTTCGTT...	A	1.439e^-4	0.713	INTRON CG6154
3L	17205918	3L_17205918_SNP [dm3] 3L_17212818_SNP [dm6]	T	A	1.443e^-4	0.713	INTRON Rbp6
2L	14546107	2L_14546107_SNP [dm3] 2L_14546107_SNP [dm6]	C	T	1.444e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19477988	2L_19477988_INS [dm3] 2L_19477988_INS [dm6]	T	TGCT	1.445e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12052833	2L_12052833_SNP [dm3] 2L_12052833_SNP [dm6]	C	T	1.454e^-4	0.713	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
3L	12480699	3L_12480699_SNP [dm3] 3L_12487599_SNP [dm6]	A	G	1.462e^-4	0.713	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20128649	2R_20128649_DEL [dm3] 2R_24241126_DEL [dm6]	TATTTATTGCTA...	T	1.467e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20128661	2R_20128661_INS [dm3] 2R_24241138_INS [dm6]	T	TCCACGCA	1.467e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15286551	X_15286551_SNP [dm3] X_15392518_SNP [dm6]	G	A	1.471e^-4	0.713	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2R	13239136	2R_13239136_SNP [dm3] 2R_17351631_SNP [dm6]	G	C	1.481e^-4	0.713	INTRON mbl
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	1.488e^-4	0.713	INTRON CG42389
3L	15028922	3L_15028922_SNP [dm3] 3L_15035822_SNP [dm6]	T	C	1.489e^-4	0.713	INTRON Sytbeta
3L	15028970	3L_15028970_SNP [dm3] 3L_15035870_SNP [dm6]	T	C	1.489e^-4	0.713	INTRON Sytbeta
3R	21883743	3R_21883743_SNP [dm3] 3R_26058021_SNP [dm6]	T	A	1.491e^-4	0.713	NON_SYNONYMOUS_CODING CG42498 START_GAINED CG14550 UTR_5_PRIME CG14550 DOWNSTREAM CG14543 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	5379229	X_5379229_DEL [dm3] X_5485196_DEL [dm6]	ACA	A	1.492e^-4	0.713	INTRON SPR
3L	9868252	3L_9868252_SNP [dm3] 3L_9875152_SNP [dm6]	T	G	1.505e^-4	0.713	UPSTREAM CR45406 INTERGENIC
2R	13238366	2R_13238366_SNP [dm3] 2R_17350861_SNP [dm6]	A	G	1.525e^-4	0.713	INTRON mbl
2R	10821583	2R_10821583_INS [dm3] 2R_14934078_INS [dm6]	G	GAG	1.527e^-4	0.713	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23980028	3R_23980028_SNP [dm3] 3R_28154306_SNP [dm6]	C	T	1.528e^-4	0.713	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3033345	2L_3033345_SNP [dm3] 2L_3033345_SNP [dm6]	C	A	1.533e^-4	0.713	NON_SYNONYMOUS_CODING CG17258	TF binding site mE1_TFBS_chinmo
3R	12961411	3R_12961411_SNP [dm3] 3R_17135689_SNP [dm6]	T	G	1.537e^-4	0.713	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
2L	21874549	2L_21874549_SNP [dm3] 2L_21874549_SNP [dm6]	G	A	1.539e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7473880	2R_7473880_SNP [dm3] 2R_11586375_SNP [dm6]	T	G	1.541e^-4	0.713	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14767829	X_14767829_SNP [dm3] X_14873796_SNP [dm6]	A	G	1.560e^-4	0.713	INTRON Flo2
2R	10325812	2R_10325812_SNP [dm3] 2R_14438307_SNP [dm6]	T	C	1.564e^-4	0.713	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	1.569e^-4	0.713	INTRON mew	TF binding site BDTNP1_TFBS_dl
2R	3741801	2R_3741801_SNP [dm3] 2R_7854296_SNP [dm6]	G	A	1.574e^-4	0.713	SYNONYMOUS_CODING Dgk INTRON Dgk
2R	3741820	2R_3741820_INS [dm3] 2R_7854315_INS [dm6]	C	CCTCCGC	1.574e^-4	0.713	CODON_INSERTION Dgk INTRON Dgk
3L	15410710	3L_15410710_SNP [dm3] 3L_15417610_SNP [dm6]	A	G	1.579e^-4	0.713	INTERGENIC
3R	21730755	3R_21730755_SNP [dm3] 3R_25905033_SNP [dm6]	A	T	1.590e^-4	0.713	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2R	14978381	2R_14978381_INS [dm3] 2R_19090876_INS [dm6]	G	GCCGGCTATCGCCTTCGTCG...	1.598e^-4	0.713
2L	10524909	2L_10524909_SNP [dm3] 2L_10524909_SNP [dm6]	T	G	1.612e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14348723	2R_14348723_SNP [dm3] 2R_18461218_SNP [dm6]	A	C	1.620e^-4	0.713	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3484657	X_3484657_SNP [dm3] X_3590624_SNP [dm6]	T	A	1.625e^-4	0.713	INTRON AstA-R1
2L	14171714	2L_14171714_SNP [dm3] 2L_14171714_SNP [dm6]	C	T	1.635e^-4	0.713	INTRON CG43333
3L	10266111	3L_10266111_SNP [dm3] 3L_10273011_SNP [dm6]	T	A	1.644e^-4	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	3568201	2R_3568201_SNP [dm3] 2R_7680696_SNP [dm6]	A	G	1.645e^-4	0.713	INTRON CG1399
2R	10325823	2R_10325823_SNP [dm3] 2R_14438318_SNP [dm6]	A	C	1.645e^-4	0.713	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19630582	X_19630582_DEL [dm3] X_19736549_DEL [dm6]	TT	T	1.666e^-4	0.713	INTRON CG14234
2R	3568154	2R_3568154_SNP [dm3] 2R_7680649_SNP [dm6]	G	A	1.678e^-4	0.713	INTRON CG1399
X	10807399	X_10807399_SNP [dm3] X_10913366_SNP [dm6]	C	T	1.684e^-4	0.713	INTRON CG43901
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	1.690e^-4	0.713	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3247706	2L_3247706_SNP [dm3] 2L_3247706_SNP [dm6]	T	C	1.695e^-4	0.713	INTERGENIC
2L	3247709	2L_3247709_DEL [dm3] 2L_3247709_DEL [dm6]	GC	G	1.695e^-4	0.713	INTERGENIC
2L	3247713	2L_3247713_SNP [dm3] 2L_3247713_SNP [dm6]	A	G	1.695e^-4	0.713	INTERGENIC
3R	21797975	3R_21797975_SNP [dm3] 3R_25972253_SNP [dm6]	G	T	1.702e^-4	0.713	INTRON CG42261	TF binding site mE1_TFBS_HSA
3R	26572983	3R_26572983_INS [dm3] 3R_30747261_INS [dm6]	A	AGAC	1.710e^-4	0.713	UPSTREAM Npc2h & 1 other INTERGENIC
2L	5892797	2L_5892797_SNP [dm3] 2L_5892797_SNP [dm6]	A	G	1.715e^-4	0.713	DOWNSTREAM Acp26Aa INTRON Acp26Ab	TF binding site mE1_TFBS_sens
2L	2781670	2L_2781670_DEL [dm3] 2L_2781670_DEL [dm6]	ACAATA	A	1.721e^-4	0.713	UTR_3_PRIME Syt1
3L	21422357	3L_21422357_SNP [dm3] 3L_21429257_SNP [dm6]	G	A	1.734e^-4	0.713	NON_SYNONYMOUS_CODING CG33288 INTRON barc
2L	12428135	2L_12428135_SNP [dm3] 2L_12428135_SNP [dm6]	G	C	1.736e^-4	0.713	SPLICE_SITE_REGION CG6388 UPSTREAM CG5446 INTRON CG6388	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14771788	2L_14771788_SNP [dm3] 2L_14771788_SNP [dm6]	A	T	1.743e^-4	0.713	INTERGENIC
2L	14656172	2L_14656172_SNP [dm3] 2L_14656172_SNP [dm6]	T	G	1.745e^-4	0.713	INTRON osp
3L	10265975	3L_10265975_INS [dm3] 3L_10272875_INS [dm6]	T	TGGAAGAT	1.749e^-4	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	14559228	2R_14559228_SNP [dm3] 2R_18671723_SNP [dm6]	G	A	1.757e^-4	0.713	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21877353	3R_21877353_SNP [dm3] 3R_26051631_SNP [dm6]	G	A	1.758e^-4	0.713	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
X	10931279	X_10931279_SNP [dm3] X_11037246_SNP [dm6]	C	A	1.761e^-4	0.713	INTRON CG42339
3L	11373821	3L_11373821_SNP [dm3] 3L_11380721_SNP [dm6]	A	G	1.762e^-4	0.713	INTERGENIC
2R	6815760	2R_6815760_SNP [dm3] 2R_10928255_SNP [dm6]	A	C	1.775e^-4	0.713	INTERGENIC
3R	16805412	3R_16805412_SNP [dm3] 3R_20979690_SNP [dm6]	T	C	1.781e^-4	0.713	INTRON Calx
3L	10774244	3L_10774244_SNP [dm3] 3L_10781144_SNP [dm6]	A	T	1.795e^-4	0.713	INTERGENIC
2L	3407364	2L_3407364_SNP [dm3] 2L_3407364_SNP [dm6]	G	T	1.797e^-4	0.713	SYNONYMOUS_CODING pgant2
3L	17314214	3L_17314214_SNP [dm3] 3L_17321114_SNP [dm6]	T	C	1.802e^-4	0.713	UPSTREAM CG6485 INTERGENIC
3R	8471511	3R_8471511_SNP [dm3] 3R_12645789_SNP [dm6]	G	A	1.806e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	716358	3L_716358_SNP [dm3] 3L_716358_SNP [dm6]	C	A	1.808e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13403408	2L_13403408_SNP [dm3] 2L_13403408_SNP [dm6]	C	T	1.817e^-4	0.713	INTRON CG7110	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19684253	2L_19684253_SNP [dm3] 2L_19684253_SNP [dm6]	A	C	1.824e^-4	0.713	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9868385	3L_9868385_SNP [dm3] 3L_9875285_SNP [dm6]	C	T	1.828e^-4	0.713	UPSTREAM CR45406 INTERGENIC
3L	9868393	3L_9868393_SNP [dm3] 3L_9875293_SNP [dm6]	T	C	1.828e^-4	0.713	UPSTREAM CR45406 INTERGENIC
3L	18652610	3L_18652610_SNP [dm3] 3L_18659510_SNP [dm6]	A	G	1.828e^-4	0.713	INTRON MYPT-75D
2R	18795551	2R_18795551_SNP [dm3] 2R_22908028_SNP [dm6]	C	T	1.830e^-4	0.713	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7326512	2R_7326512_SNP [dm3] 2R_11439007_SNP [dm6]	T	A	1.832e^-4	0.713	INTRON CG7777
3L	17323387	3L_17323387_SNP [dm3] 3L_17330287_SNP [dm6]	T	C	1.834e^-4	0.713	INTERGENIC
3R	19613428	3R_19613428_SNP [dm3] 3R_23787706_SNP [dm6]	C	T	1.843e^-4	0.713	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3R	17689564	3R_17689564_SNP [dm3] 3R_21863842_SNP [dm6]	T	G	1.844e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9585423	3L_9585423_SNP [dm3] 3L_9592323_SNP [dm6]	T	C	1.867e^-4	0.713	INTRON CG42673
2R	17885642	2R_17885642_SNP [dm3] 2R_21998137_SNP [dm6]	T	C	1.869e^-4	0.713	INTRON CG34370
2L	13443273	2L_13443273_INS [dm3] 2L_13443273_INS [dm6]	C	CGAGC	1.879e^-4	0.713	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1060563	X_1060563_SNP [dm3] X_1166530_SNP [dm6]	T	C	1.893e^-4	0.713	INTERGENIC
2R	6230286	2R_6230286_SNP [dm3] 2R_10342781_SNP [dm6]	C	A	1.893e^-4	0.713	INTRON CG42732
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	1.903e^-4	0.713	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25161806	3R_25161806_SNP [dm3] 3R_29336084_SNP [dm6]	C	A	1.905e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20500675	2L_20500675_SNP [dm3] 2L_20500675_SNP [dm6]	C	G	1.913e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10862759	2R_10862759_SNP [dm3] 2R_14975254_SNP [dm6]	A	T	1.915e^-4	0.713	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9163742	2L_9163742_SNP [dm3] 2L_9163742_SNP [dm6]	G	C	1.926e^-4	0.713	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC
3L	18360217	3L_18360217_SNP [dm3] 3L_18367117_SNP [dm6]	A	T	1.937e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18202291	2R_18202291_SNP [dm3] 2R_22314786_SNP [dm6]	C	T	1.946e^-4	0.713	INTRON CR44758
2R	14164204	2R_14164204_SNP [dm3] 2R_18276699_SNP [dm6]	T	G	1.946e^-4	0.713	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15467233	3L_15467233_DEL [dm3] 3L_15474133_DEL [dm6]	GTT	CG	1.961e^-4	0.713	UPSTREAM CG7804 INTERGENIC
2R	16428804	2R_16428804_SNP [dm3] 2R_20541299_SNP [dm6]	T	C	1.968e^-4	0.713	UPSTREAM CG13428 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4605467	3L_4605467_SNP [dm3] 3L_4605467_SNP [dm6]	A	T	1.978e^-4	0.713	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13239081	2R_13239081_SNP [dm3] 2R_17351576_SNP [dm6]	T	C	1.991e^-4	0.713	INTRON mbl
3R	8396921	3R_8396921_SNP [dm3] 3R_12571199_SNP [dm6]	G	A	1.995e^-4	0.713	INTRON Octbeta2R
3R	8426086	3R_8426086_SNP [dm3] 3R_12600364_SNP [dm6]	A	G	1.995e^-4	0.713	INTERGENIC
3R	10059491	3R_10059491_SNP [dm3] 3R_14233769_SNP [dm6]	G	A	2.025e^-4	0.713	INTERGENIC
2L	17453263	2L_17453263_SNP [dm3] 2L_17453263_SNP [dm6]	A	T	2.048e^-4	0.713	SYNONYMOUS_CODING CG5050 DOWNSTREAM CG6639
3L	7863764	3L_7863764_SNP [dm3] 3L_7870664_SNP [dm6]	C	A	2.054e^-4	0.713	INTRON CG32365
2L	18253758	2L_18253758_SNP [dm3] 2L_18253758_SNP [dm6]	A	T	2.068e^-4	0.713	INTRON CG42750
2L	16703580	2L_16703580_SNP [dm3] 2L_16703580_SNP [dm6]	A	T	2.076e^-4	0.713	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3741666	2R_3741666_SNP [dm3] 2R_7854161_SNP [dm6]	G	C	2.079e^-4	0.713	SPLICE_SITE_REGION Dgk SYNONYMOUS_CODING Dgk INTRON Dgk
2L	1632142	2L_1632142_SNP [dm3] 2L_1632142_SNP [dm6]	A	G	2.088e^-4	0.713	INTERGENIC
2R	13182925	2R_13182925_SNP [dm3] 2R_17295420_SNP [dm6]	G	C	2.095e^-4	0.713	INTRON mbl
3L	12860775	3L_12860775_SNP [dm3] 3L_12867675_SNP [dm6]	C	A	2.130e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25665593	3R_25665593_SNP [dm3] 3R_29839871_SNP [dm6]	C	T	2.132e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19612729	3R_19612729_SNP [dm3] 3R_23787007_SNP [dm6]	T	A	2.156e^-4	0.713	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26639903	3R_26639903_SNP [dm3] 3R_30814181_SNP [dm6]	A	G	2.157e^-4	0.713	INTRON cindr
2R	3743708	2R_3743708_SNP [dm3] 2R_7856203_SNP [dm6]	G	T	2.159e^-4	0.713	INTRON Dgk
2R	3743755	2R_3743755_SNP [dm3] 2R_7856250_SNP [dm6]	C	T	2.159e^-4	0.713	INTRON Dgk
2R	12411331	2R_12411331_SNP [dm3] 2R_16523826_SNP [dm6]	G	A	2.169e^-4	0.713	INTRON Sema-2a
2R	10862770	2R_10862770_SNP [dm3] 2R_14975265_SNP [dm6]	C	T	2.172e^-4	0.713	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11157052	2L_11157052_SNP [dm3] 2L_11157052_SNP [dm6]	T	A	2.176e^-4	0.713	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
3L	16755738	3L_16755738_SNP [dm3] 3L_16762638_SNP [dm6]	C	A	2.182e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3788465	2L_3788465_SNP [dm3] 2L_3788465_SNP [dm6]	G	C	2.184e^-4	0.713	INTRON CG3921
2R	7192016	2R_7192016_SNP [dm3] 2R_11304511_SNP [dm6]	G	A	2.195e^-4	0.713	NON_SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
X	5259013	X_5259013_SNP [dm3] X_5364980_SNP [dm6]	C	T	2.197e^-4	0.713	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
3R	21071635	3R_21071635_SNP [dm3] 3R_25245913_SNP [dm6]	G	T	2.202e^-4	0.713	UPSTREAM bam DOWNSTREAM RpS27 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8647795	3L_8647795_SNP [dm3] 3L_8654695_SNP [dm6]	T	G	2.214e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16223776	3L_16223776_SNP [dm3] 3L_16230676_SNP [dm6]	T	C	2.216e^-4	0.713	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3L	7265549	3L_7265549_SNP [dm3] 3L_7272449_SNP [dm6]	G	A	2.240e^-4	0.713	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
X	1159617	X_1159617_SNP [dm3] X_1265584_SNP [dm6]	C	T	2.275e^-4	0.713	INTRON Atf3
X	10931294	X_10931294_SNP [dm3] X_11037261_SNP [dm6]	G	A	2.283e^-4	0.713	INTRON CG42339
2R	3742160	2R_3742160_SNP [dm3] 2R_7854655_SNP [dm6]	G	A	2.294e^-4	0.713	SYNONYMOUS_CODING Dgk
2R	3743460	2R_3743460_SNP [dm3] 2R_7855955_SNP [dm6]	G	A	2.294e^-4	0.713	INTRON Dgk
2R	3743872	2R_3743872_SNP [dm3] 2R_7856367_SNP [dm6]	A	G	2.294e^-4	0.713	INTRON Dgk
3R	4504367	3R_4504367_SNP [dm3] 3R_8678645_SNP [dm6]	T	A	2.301e^-4	0.713	NON_SYNONYMOUS_CODING CG11755 DOWNSTREAM CG33325 & 1 other	TF binding site mE1_TFBS_cad
2L	18882674	2L_18882674_SNP [dm3] 2L_18882674_SNP [dm6]	T	G	2.304e^-4	0.713	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1157570	X_1157570_SNP [dm3] X_1263537_SNP [dm6]	T	G	2.317e^-4	0.713	INTRON Atf3
2R	16457997	2R_16457997_SNP [dm3] 2R_20570492_SNP [dm6]	C	A	2.326e^-4	0.713	INTRON qsm	TF binding site BDTNP1_TFBS_prd
3L	14184848	3L_14184848_SNP [dm3] 3L_14191748_SNP [dm6]	C	A	2.326e^-4	0.713	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	2372661	X_2372661_SNP [dm3] X_2478628_SNP [dm6]	G	T	2.332e^-4	0.713	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3R	16233833	3R_16233833_SNP [dm3] 3R_20408111_SNP [dm6]	A	G	2.337e^-4	0.713	UPSTREAM CG10881 & 1 other INTRON Gfrl
2R	8919049	2R_8919049_SNP [dm3] 2R_13031544_SNP [dm6]	A	G	2.359e^-4	0.713	INTERGENIC
2R	6230212	2R_6230212_SNP [dm3] 2R_10342707_SNP [dm6]	A	C	2.365e^-4	0.713	INTRON CG42732
3R	25490011	3R_25490011_SNP [dm3] 3R_29664289_SNP [dm6]	C	A	2.382e^-4	0.713	UPSTREAM ppk21 INTERGENIC
2R	7001092	2R_7001092_SNP [dm3] 2R_11113587_SNP [dm6]	G	C	2.385e^-4	0.713	INTRON luna
2R	7001189	2R_7001189_SNP [dm3] 2R_11113684_SNP [dm6]	A	G	2.385e^-4	0.713	INTRON luna
3L	9587572	3L_9587572_SNP [dm3] 3L_9594472_SNP [dm6]	A	T	2.388e^-4	0.713	UTR_3_PRIME CG42673 INTRON CG42673
3L	9499045	3L_9499045_SNP [dm3] 3L_9505945_SNP [dm6]	T	C	2.396e^-4	0.713	UPSTREAM path DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11402935	3R_11402935_SNP [dm3] 3R_15577213_SNP [dm6]	G	A	2.398e^-4	0.713	INTERGENIC
3L	15402365	3L_15402365_SNP [dm3] 3L_15409265_SNP [dm6]	G	A	2.408e^-4	0.713	DOWNSTREAM CG33259 INTERGENIC
3R	24811996	3R_24811996_SNP [dm3] 3R_28986274_SNP [dm6]	T	C	2.419e^-4	0.713	INTERGENIC
2L	11851867	2L_11851867_SNP [dm3] 2L_11851867_SNP [dm6]	G	A	2.428e^-4	0.713	SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
3R	10185630	3R_10185630_SNP [dm3] 3R_14359908_SNP [dm6]	G	A	2.468e^-4	0.713	SYNONYMOUS_CODING CG31320 INTRON NK7.1
2R	10717219	2R_10717219_SNP [dm3] 2R_14829714_SNP [dm6]	G	T	2.480e^-4	0.713	INTERGENIC
2R	13663186	2R_13663186_SNP [dm3] 2R_17775681_SNP [dm6]	A	G	2.481e^-4	0.713	INTRON fab1 & 1 other
2L	7962985	2L_7962985_SNP [dm3] 2L_7962985_SNP [dm6]	A	C	2.483e^-4	0.713	INTRON Snoo
2L	7742311	2L_7742311_SNP [dm3] 2L_7742311_SNP [dm6]	A	T	2.483e^-4	0.713	UPSTREAM Acp1 INTERGENIC
3R	14393338	3R_14393338_SNP [dm3] 3R_18567616_SNP [dm6]	A	G	2.485e^-4	0.713	INTERGENIC
X	10338933	X_10338933_INS [dm3] X_10444900_INS [dm6]	T	TTT	2.499e^-4	0.713	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3R	13475570	3R_13475570_SNP [dm3] 3R_17649848_SNP [dm6]	C	A	2.500e^-4	0.713	INTRON CG14322
3R	7315345	3R_7315345_SNP [dm3] 3R_11489623_SNP [dm6]	G	A	2.500e^-4	0.713	INTERGENIC
3R	13475322	3R_13475322_SNP [dm3] 3R_17649600_SNP [dm6]	C	A	2.534e^-4	0.713	INTRON CG14322
3R	10501998	3R_10501998_DEL [dm3] 3R_14676276_DEL [dm6]	AG	A	2.544e^-4	0.713	INTRON Meltrin	TF binding site mE1_TFBS_cad
3L	14814612	3L_14814612_SNP [dm3] 3L_14821512_SNP [dm6]	T	C	2.547e^-4	0.713	INTRON CG17839
X	3484682	X_3484682_SNP [dm3] X_3590649_SNP [dm6]	A	C	2.553e^-4	0.713	INTRON AstA-R1
3R	25850577	3R_25850577_SNP [dm3] 3R_30024855_SNP [dm6]	A	T	2.557e^-4	0.713	INTRON Axn
X	4470532	X_4470532_SNP [dm3] X_4576499_SNP [dm6]	C	T	2.567e^-4	0.713	INTRON CR32773
3L	3893436	3L_3893436_SNP [dm3] 3L_3893436_SNP [dm6]	A	G	2.568e^-4	0.713	UPSTREAM snRNA:U11 INTRON Fie
2L	2831651	2L_2831651_SNP [dm3] 2L_2831651_SNP [dm6]	C	A	2.573e^-4	0.713	INTERGENIC
3R	21895901	3R_21895901_SNP [dm3] 3R_26070179_SNP [dm6]	T	A	2.588e^-4	0.713	DOWNSTREAM CR44950 INTERGENIC
X	5275604	X_5275604_SNP [dm3] X_5381571_SNP [dm6]	T	A	2.588e^-4	0.713	INTRON SK
3L	10418503	3L_10418503_SNP [dm3] 3L_10425403_SNP [dm6]	C	G	2.601e^-4	0.713	INTERGENIC
2L	3749674	2L_3749674_SNP [dm3] 2L_3749674_SNP [dm6]	C	A	2.625e^-4	0.713	INTRON CG10019
3L	13904900	3L_13904900_SNP [dm3] 3L_13911800_SNP [dm6]	G	T	2.647e^-4	0.713	INTRON Rgl
3R	15897412	3R_15897412_SNP [dm3] 3R_20071690_SNP [dm6]	T	C	2.652e^-4	0.713	INTERGENIC
3L	20504334	3L_20504334_SNP [dm3] 3L_20511234_SNP [dm6]	A	G	2.658e^-4	0.713	DOWNSTREAM CG32425 INTRON CG32425
3R	25665585	3R_25665585_SNP [dm3] 3R_29839863_SNP [dm6]	T	G	2.664e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15310872	2L_15310872_SNP [dm3] 2L_15310872_SNP [dm6]	T	C	2.674e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26686256	3R_26686256_SNP [dm3] 3R_30860534_SNP [dm6]	C	T	2.675e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16931471	2R_16931471_SNP [dm3] 2R_21043966_SNP [dm6]	T	C	2.678e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17502985	X_17502985_SNP [dm3] X_17608952_SNP [dm6]	C	T	2.690e^-4	0.713	INTERGENIC
3L	18007666	3L_18007666_SNP [dm3] 3L_18014566_SNP [dm6]	A	G	2.709e^-4	0.713	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	2.715e^-4	0.713	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3L	11391996	3L_11391996_INS [dm3] 3L_11398896_INS [dm6]	A	AA	2.716e^-4	0.713	INTERGENIC
3L	11391998	3L_11391998_SNP [dm3] 3L_11398898_SNP [dm6]	C	T	2.716e^-4	0.713	INTERGENIC
3L	845779	3L_845779_SNP [dm3] 3L_845779_SNP [dm6]	A	G	2.719e^-4	0.713	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
3R	24144231	3R_24144231_SNP [dm3] 3R_28318509_SNP [dm6]	G	T	2.725e^-4	0.713	UTR_3_PRIME larp
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	2.732e^-4	0.713	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7022444	2R_7022444_SNP [dm3] 2R_11134939_SNP [dm6]	T	A	2.741e^-4	0.713	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	16227333	3R_16227333_SNP [dm3] 3R_20401611_SNP [dm6]	C	T	2.742e^-4	0.713	INTRON Gfrl
3R	25513878	3R_25513878_SNP [dm3] 3R_29688156_SNP [dm6]	T	G	2.746e^-4	0.713	INTRON Obp99c
2R	17447586	2R_17447586_INS [dm3] 2R_21560081_INS [dm6]	A	AA	2.748e^-4	0.713	DOWNSTREAM CG10440 & 1 other INTERGENIC
2R	16760659	2R_16760659_SNP [dm3] 2R_20873154_SNP [dm6]	G	C	2.749e^-4	0.713	INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	15327890	2L_15327890_SNP [dm3] 2L_15327890_SNP [dm6]	T	A	2.753e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	26677213	3R_26677213_SNP [dm3] 3R_30851491_SNP [dm6]	T	C	2.758e^-4	0.713	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11941847	2L_11941847_SNP [dm3] 2L_11941847_SNP [dm6]	G	T	2.760e^-4	0.713	INTERGENIC
3L	1183349	3L_1183349_SNP [dm3] 3L_1183349_SNP [dm6]	G	T	2.767e^-4	0.713	INTERGENIC
3L	13081999	3L_13081999_SNP [dm3] 3L_13088899_SNP [dm6]	C	T	2.774e^-4	0.713	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8213359	3L_8213359_SNP [dm3] 3L_8220259_SNP [dm6]	A	G	2.786e^-4	0.713	INTERGENIC
3L	7937890	3L_7937890_SNP [dm3] 3L_7944790_SNP [dm6]	A	G	2.795e^-4	0.713	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11353543	X_11353543_SNP [dm3] X_11459510_SNP [dm6]	C	G	2.799e^-4	0.713	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2R	11972370	2R_11972370_SNP [dm3] 2R_16084865_SNP [dm6]	A	G	2.801e^-4	0.713	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18852785	3L_18852785_SNP [dm3] 3L_18859685_SNP [dm6]	A	G	2.807e^-4	0.713	INTERGENIC
3R	21798075	3R_21798075_SNP [dm3] 3R_25972353_SNP [dm6]	T	A	2.808e^-4	0.713	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8494337	2R_8494337_SNP [dm3] 2R_12606832_SNP [dm6]	A	T	2.811e^-4	0.713	INTRON Amph
3L	15454572	3L_15454572_SNP [dm3] 3L_15461472_SNP [dm6]	T	A	2.830e^-4	0.713	INTERGENIC
3R	16775418	3R_16775418_SNP [dm3] 3R_20949696_SNP [dm6]	G	T	2.831e^-4	0.713	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16775439	3R_16775439_SNP [dm3] 3R_20949717_SNP [dm6]	C	A	2.831e^-4	0.713	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20619541	3R_20619541_SNP [dm3] 3R_24793819_SNP [dm6]	A	C	2.831e^-4	0.713	INTRON Ets96B	TF binding site mE1_TFBS_cad
3L	3840700	3L_3840700_SNP [dm3] 3L_3840700_SNP [dm6]	G	A	2.838e^-4	0.713	UTR_3_PRIME enc
3L	4685751	3L_4685751_SNP [dm3] 3L_4685751_SNP [dm6]	C	T	2.839e^-4	0.713	INTRON axo
3L	13018896	3L_13018896_SNP [dm3] 3L_13025796_SNP [dm6]	C	A	2.841e^-4	0.713	SYNONYMOUS_CODING Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2922148	3L_2922148_SNP [dm3] 3L_2922148_SNP [dm6]	G	A	2.845e^-4	0.713	INTRON Shab
3R	16925391	3R_16925391_SNP [dm3] 3R_21099669_SNP [dm6]	C	G	2.853e^-4	0.713	SYNONYMOUS_CODING CG7044
3R	16925424	3R_16925424_SNP [dm3] 3R_21099702_SNP [dm6]	G	A	2.853e^-4	0.713	SYNONYMOUS_CODING CG7044
3R	16925472	3R_16925472_SNP [dm3] 3R_21099750_SNP [dm6]	C	T	2.853e^-4	0.713	INTRON CG7044
3R	16925474	3R_16925474_SNP [dm3] 3R_21099752_SNP [dm6]	A	T	2.853e^-4	0.713	INTRON CG7044
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	2.859e^-4	0.713	INTRON CG1213
2L	9505610	2L_9505610_SNP [dm3] 2L_9505610_SNP [dm6]	C	T	2.864e^-4	0.713	INTRON CG33298
X	4979553	X_4979553_SNP [dm3] X_5085520_SNP [dm6]	T	C	2.869e^-4	0.713	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16223766	3L_16223766_SNP [dm3] 3L_16230666_SNP [dm6]	C	T	2.869e^-4	0.713	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3R	17702948	3R_17702948_SNP [dm3] 3R_21877226_SNP [dm6]	T	C	2.870e^-4	0.713	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6545421	2R_6545421_SNP [dm3] 2R_10657916_SNP [dm6]	T	C	2.874e^-4	0.713	UPSTREAM CR44452 INTERGENIC
2L	15743776	2L_15743776_SNP [dm3] 2L_15743776_SNP [dm6]	C	A	2.878e^-4	0.713	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	11391994	3L_11391994_SNP [dm3] 3L_11398894_SNP [dm6]	G	C	2.913e^-4	0.713	INTERGENIC
X	20771150	X_20771150_SNP [dm3] X_20900123_SNP [dm6]	G	A	2.920e^-4	0.713	INTRON shakB
2R	7885352	2R_7885352_SNP [dm3] 2R_11997847_SNP [dm6]	C	G	2.931e^-4	0.713	INTERGENIC
2R	7891607	2R_7891607_SNP [dm3] 2R_12004102_SNP [dm6]	C	G	2.931e^-4	0.713	NON_SYNONYMOUS_CODING otk
3L	14346287	3L_14346287_SNP [dm3] 3L_14353187_SNP [dm6]	G	A	2.934e^-4	0.713	INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9378138	3L_9378138_SNP [dm3] 3L_9385038_SNP [dm6]	C	A	2.935e^-4	0.713	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site mE1_TFBS_cad
2L	1074961	2L_1074961_SNP [dm3] 2L_1074961_SNP [dm6]	T	G	2.937e^-4	0.713	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	3939226	X_3939226_SNP [dm3] X_4045193_SNP [dm6]	C	T	2.944e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8100060	X_8100060_SNP [dm3] X_8206027_SNP [dm6]	G	A	2.958e^-4	0.713	INTRON sdt
2L	15615918	2L_15615918_SNP [dm3] 2L_15615918_SNP [dm6]	A	G	2.963e^-4	0.713	SYNONYMOUS_CODING CG15253
3R	22988159	3R_22988159_SNP [dm3] 3R_27162437_SNP [dm6]	G	A	2.975e^-4	0.713	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3R	22988168	3R_22988168_SNP [dm3] 3R_27162446_SNP [dm6]	C	T	2.975e^-4	0.713	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3L	11363887	3L_11363887_SNP [dm3] 3L_11370787_SNP [dm6]	T	A	2.984e^-4	0.713	INTERGENIC
3R	25008278	3R_25008278_DEL [dm3] 3R_29182556_DEL [dm6]	TTATAAGCTTGAACT...	T	3.001e^-4	0.713	INTRON CG14509
2R	13663170	2R_13663170_SNP [dm3] 2R_17775665_SNP [dm6]	G	A	3.004e^-4	0.713	INTRON fab1 & 1 other
2L	15104981	2L_15104981_SNP [dm3] 2L_15104981_SNP [dm6]	T	A	3.007e^-4	0.713	INTERGENIC
2L	15630618	2L_15630618_SNP [dm3] 2L_15630618_SNP [dm6]	T	A	3.007e^-4	0.713	INTRON CG18480
2L	15647850	2L_15647850_SNP [dm3] 2L_15647850_SNP [dm6]	C	T	3.007e^-4	0.713	SYNONYMOUS_CODING CG4587
2L	15648037	2L_15648037_SNP [dm3] 2L_15648037_SNP [dm6]	C	T	3.007e^-4	0.713	INTRON CG4587
2L	15648147	2L_15648147_SNP [dm3] 2L_15648147_SNP [dm6]	T	G	3.007e^-4	0.713	SYNONYMOUS_CODING CG4587
3L	9231828	3L_9231828_DEL [dm3] 3L_9238728_DEL [dm6]	CAAA	C	3.009e^-4	0.713	INTERGENIC
X	1061028	X_1061028_SNP [dm3] X_1166995_SNP [dm6]	C	T	3.011e^-4	0.713	INTERGENIC
3L	14941299	3L_14941299_SNP [dm3] 3L_14948199_SNP [dm6]	C	T	3.014e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9062242	3L_9062242_SNP [dm3] 3L_9069142_SNP [dm6]	G	T	3.017e^-4	0.713	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
2L	1570141	2L_1570141_SNP [dm3] 2L_1570141_SNP [dm6]	A	C	3.018e^-4	0.713	INTRON haf
3R	21604534	3R_21604534_SNP [dm3] 3R_25778812_SNP [dm6]	A	G	3.024e^-4	0.713	UPSTREAM CG4956 INTERGENIC
3R	12799576	3R_12799576_SNP [dm3] 3R_16973854_SNP [dm6]	C	T	3.035e^-4	0.713	INTERGENIC
3R	12799862	3R_12799862_SNP [dm3] 3R_16974140_SNP [dm6]	G	C	3.035e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	11137571	3L_11137571_SNP [dm3] 3L_11144471_SNP [dm6]	A	T	3.036e^-4	0.713	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	13475569	3R_13475569_SNP [dm3] 3R_17649847_SNP [dm6]	T	A	3.037e^-4	0.713	INTRON CG14322
2L	7524139	2L_7524139_DEL [dm3] 2L_7524139_DEL [dm6]	CCATTTTTTCAGCCACAAAA...	C	3.041e^-4	0.713	INTRON RapGAP1
3R	26242356	3R_26242356_SNP [dm3] 3R_30416634_SNP [dm6]	G	T	3.049e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9341028	2R_9341028_SNP [dm3] 2R_13453523_SNP [dm6]	T	C	3.049e^-4	0.713	DOWNSTREAM arr & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	7001167	2R_7001167_SNP [dm3] 2R_11113662_SNP [dm6]	G	A	3.049e^-4	0.713	INTRON luna
3L	2861599	3L_2861599_SNP [dm3] 3L_2861599_SNP [dm6]	A	C	3.054e^-4	0.713	INTRON CG43444
2R	10111401	2R_10111401_SNP [dm3] 2R_14223896_SNP [dm6]	A	C	3.055e^-4	0.713	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10418620	3L_10418620_SNP [dm3] 3L_10425520_SNP [dm6]	T	G	3.055e^-4	0.713	INTERGENIC
2L	15466646	2L_15466646_SNP [dm3] 2L_15466646_SNP [dm6]	T	C	3.058e^-4	0.713	INTERGENIC
X	20879572	X_20879572_INS [dm3] X_21008545_INS [dm6]	A	ATA	3.061e^-4	0.713	INTERGENIC
3L	4681359	3L_4681359_DEL [dm3] 3L_4681359_DEL [dm6]	TT	T	3.063e^-4	0.713	UTR_5_PRIME axo INTRON axo
3L	13393391	3L_13393391_SNP [dm3] 3L_13400291_SNP [dm6]	C	A	3.073e^-4	0.713	NON_SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4840839	3L_4840839_SNP [dm3] 3L_4840839_SNP [dm6]	T	C	3.073e^-4	0.713	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5287533	3L_5287533_SNP [dm3] 3L_5294433_SNP [dm6]	T	C	3.073e^-4	0.713	INTERGENIC
3L	5702533	3L_5702533_SNP [dm3] 3L_5709433_SNP [dm6]	C	A	3.073e^-4	0.713	INTRON sif
3L	18007664	3L_18007664_INS [dm3] 3L_18014564_INS [dm6]	G	GTCGCAGAG	3.074e^-4	0.713	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4818377	2L_4818377_INS [dm3] 2L_4818377_INS [dm6]	T	TT	3.076e^-4	0.713	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5887197	2L_5887197_SNP [dm3] 2L_5887197_SNP [dm6]	T	C	3.076e^-4	0.713	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	18692277	3R_18692277_SNP [dm3] 3R_22866555_SNP [dm6]	C	T	3.099e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16760508	2R_16760508_SNP [dm3] 2R_20873003_SNP [dm6]	A	G	3.102e^-4	0.713	INTRON Ipk1	TF binding site mE1_TFBS_cad
2R	10111412	2R_10111412_SNP [dm3] 2R_14223907_SNP [dm6]	A	T	3.114e^-4	0.713	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4979390	X_4979390_SNP [dm3] X_5085357_SNP [dm6]	A	G	3.114e^-4	0.713	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20905311	2L_20905311_SNP [dm3] 2L_20905311_SNP [dm6]	A	C	3.115e^-4	0.713	INTRON sky & 1 other
3L	3702459	3L_3702459_SNP [dm3] 3L_3702459_SNP [dm6]	T	C	3.134e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8305753	2R_8305753_SNP [dm3] 2R_12418248_SNP [dm6]	T	G	3.148e^-4	0.713	DOWNSTREAM CG42782 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	13539973	3R_13539973_SNP [dm3] 3R_17714251_SNP [dm6]	A	T	3.151e^-4	0.713	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13539979	3R_13539979_SNP [dm3] 3R_17714257_SNP [dm6]	C	G	3.151e^-4	0.713	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12521039	2L_12521039_SNP [dm3] 2L_12521039_SNP [dm6]	A	T	3.152e^-4	0.713	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10418588	3L_10418588_SNP [dm3] 3L_10425488_SNP [dm6]	C	A	3.156e^-4	0.713	INTERGENIC
3R	22446185	3R_22446185_DEL [dm3] 3R_26620463_DEL [dm6]	TTATTTCTT	T	3.160e^-4	0.713	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22446232	3R_22446232_DEL [dm3] 3R_26620510_DEL [dm6]	CTATAAATAGGTA...	C	3.160e^-4	0.713	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13904901	3L_13904901_SNP [dm3] 3L_13911801_SNP [dm6]	G	T	3.174e^-4	0.713	INTRON Rgl
2L	17158772	2L_17158772_SNP [dm3] 2L_17158772_SNP [dm6]	A	G	3.196e^-4	0.713	INTRON beat-IIIa & 1 other
2L	17158898	2L_17158898_SNP [dm3] 2L_17158898_SNP [dm6]	T	A	3.196e^-4	0.713	INTRON beat-IIIa & 1 other
2L	15479104	2L_15479104_SNP [dm3] 2L_15479104_SNP [dm6]	C	G	3.200e^-4	0.713	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13673346	3R_13673346_SNP [dm3] 3R_17847624_SNP [dm6]	G	T	3.201e^-4	0.713	INTRON tinc
2R	18266733	2R_18266733_DEL [dm3] 2R_22379228_DEL [dm6]	ACA	A	3.201e^-4	0.713	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
3L	13018845	3L_13018845_SNP [dm3] 3L_13025745_SNP [dm6]	G	C	3.206e^-4	0.713	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM RpS12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17430071	3R_17430071_INS [dm3] 3R_21604349_INS [dm6]	A	AA	3.222e^-4	0.713	INTRON InR	TF binding site BDTNP1_TFBS_dl
2L	6673682	2L_6673682_SNP [dm3] 2L_6673682_SNP [dm6]	A	G	3.226e^-4	0.713	UPSTREAM CG34310 & 1 other DOWNSTREAM cort INTRON cup & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25493624	3R_25493624_SNP [dm3] 3R_29667902_SNP [dm6]	T	C	3.227e^-4	0.713	SYNONYMOUS_CODING ppk20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25493666	3R_25493666_SNP [dm3] 3R_29667944_SNP [dm6]	A	G	3.227e^-4	0.713	SPLICE_SITE_REGION ppk20 INTRON ppk20	TF binding site mE1_TFBS_cad
3R	12961405	3R_12961405_SNP [dm3] 3R_17135683_SNP [dm6]	G	T	3.237e^-4	0.713	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
2R	16777096	2R_16777096_SNP [dm3] 2R_20889591_SNP [dm6]	C	G	3.239e^-4	0.713	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23647677	3L_23647677_SNP [dm3] 3L_23654577_SNP [dm6]	G	T	3.241e^-4	0.713	INTRON AGO3	transposable element FlyBase
3L	23672790	3L_23672790_SNP [dm3] 3L_23679690_SNP [dm6]	G	A	3.241e^-4	0.713	INTRON AGO3
3R	16345240	3R_16345240_SNP [dm3] 3R_20519518_SNP [dm6]	C	A	3.250e^-4	0.713	INTERGENIC
3L	17317017	3L_17317017_SNP [dm3] 3L_17323917_SNP [dm6]	C	T	3.251e^-4	0.713	SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11368053	2L_11368053_SNP [dm3] 2L_11368053_SNP [dm6]	C	A	3.263e^-4	0.713	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14441404	2L_14441404_SNP [dm3] 2L_14441404_SNP [dm6]	G	T	3.263e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15467460	2L_15467460_SNP [dm3] 2L_15467460_SNP [dm6]	T	A	3.263e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3853540	2L_3853540_SNP [dm3] 2L_3853540_SNP [dm6]	T	C	3.263e^-4	0.713	DOWNSTREAM CR45451 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13765475	2L_13765475_SNP [dm3] 2L_13765475_SNP [dm6]	T	C	3.268e^-4	0.713	INTRON TM9SF4
2L	17167530	2L_17167530_SNP [dm3] 2L_17167530_SNP [dm6]	C	T	3.278e^-4	0.713	INTRON beat-IIIa & 1 other
2R	12409864	2R_12409864_SNP [dm3] 2R_16522359_SNP [dm6]	C	A	3.282e^-4	0.713	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
2L	20963537	2L_20963537_SNP [dm3] 2L_20963537_SNP [dm6]	A	G	3.294e^-4	0.713	INTERGENIC
X	4979513	X_4979513_SNP [dm3] X_5085480_SNP [dm6]	A	G	3.294e^-4	0.713	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19803615	2L_19803615_SNP [dm3] 2L_19803615_SNP [dm6]	G	A	3.299e^-4	0.713	INTRON sick
2L	6414306	2L_6414306_SNP [dm3] 2L_6414306_SNP [dm6]	C	T	3.306e^-4	0.713	UTR_3_PRIME CG13982 DOWNSTREAM Tig
3L	11378310	3L_11378310_SNP [dm3] 3L_11385210_SNP [dm6]	T	A	3.310e^-4	0.713	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11378313	3L_11378313_SNP [dm3] 3L_11385213_SNP [dm6]	C	T	3.310e^-4	0.713	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	3297809	2L_3297809_SNP [dm3] 2L_3297809_SNP [dm6]	T	C	3.312e^-4	0.713	INTRON CG9663
3L	1086784	3L_1086784_SNP [dm3] 3L_1086784_SNP [dm6]	G	A	3.313e^-4	0.713	INTRON bab1
2L	2676167	2L_2676167_INS [dm3] 2L_2676167_INS [dm6]	T	TAAATTCTTT	3.318e^-4	0.713	INTERGENIC
2L	3712999	2L_3712999_SNP [dm3] 2L_3712999_SNP [dm6]	T	A	3.319e^-4	0.713	START_GAINED CG31955 UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3713007	2L_3713007_SNP [dm3] 2L_3713007_SNP [dm6]	T	G	3.319e^-4	0.713	UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3713024	2L_3713024_SNP [dm3] 2L_3713024_SNP [dm6]	A	G	3.319e^-4	0.713	UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10418509	3L_10418509_SNP [dm3] 3L_10425409_SNP [dm6]	T	A	3.332e^-4	0.713	INTERGENIC
2R	7884971	2R_7884971_SNP [dm3] 2R_11997466_SNP [dm6]	G	T	3.332e^-4	0.713	INTERGENIC
3L	1686320	3L_1686320_SNP [dm3] 3L_1686320_SNP [dm6]	A	G	3.334e^-4	0.713	INTRON CG7991
2L	2858958	2L_2858958_SNP [dm3] 2L_2858958_SNP [dm6]	T	C	3.336e^-4	0.713	INTRON CG2991	TF binding site BDTNP1_TFBS_dl
3L	12618497	3L_12618497_SNP [dm3] 3L_12625397_SNP [dm6]	C	T	3.336e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23983200	3R_23983200_SNP [dm3] 3R_28157478_SNP [dm6]	A	T	3.344e^-4	0.713	INTRON CG34354	TF binding site mE1_TFBS_inv
2L	15124450	2L_15124450_SNP [dm3] 2L_15124450_SNP [dm6]	A	T	3.351e^-4	0.713	INTERGENIC
2L	15124455	2L_15124455_MNP [dm3] 2L_15124455_MNP [dm6]	AAG	GTT	3.351e^-4	0.713	INTERGENIC
2L	15124464	2L_15124464_SNP [dm3] 2L_15124464_SNP [dm6]	T	A	3.351e^-4	0.713	INTERGENIC
2L	3894551	2L_3894551_SNP [dm3] 2L_3894551_SNP [dm6]	T	C	3.356e^-4	0.713	INTRON capu
3L	9543654	3L_9543654_SNP [dm3] 3L_9550554_SNP [dm6]	A	G	3.358e^-4	0.713	INTRON CG42673
2L	10297990	2L_10297990_SNP [dm3] 2L_10297990_SNP [dm6]	A	T	3.368e^-4	0.713	INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	10910615	2L_10910615_SNP [dm3] 2L_10910615_SNP [dm6]	T	A	3.373e^-4	0.713	UTR_5_PRIME CG14069 UPSTREAM CG14069
2L	10010520	2L_10010520_DEL [dm3] 2L_10010520_DEL [dm6]	AAGA	A	3.379e^-4	0.713	INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8665824	2L_8665824_INS [dm3] 2L_8665824_INS [dm6]	T	TAT	3.383e^-4	0.713	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2L	5562915	2L_5562915_SNP [dm3] 2L_5562915_SNP [dm6]	G	T	3.383e^-4	0.713	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
X	4986586	X_4986586_SNP [dm3] X_5092553_SNP [dm6]	T	A	3.385e^-4	0.713	INTRON rg & 1 other
3L	8743946	3L_8743946_INS [dm3] 3L_8750846_INS [dm6]	A	ACAACT	3.386e^-4	0.713	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3939078	X_3939078_SNP [dm3] X_4045045_SNP [dm6]	G	T	3.386e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18616090	2R_18616090_SNP [dm3] 2R_22728585_SNP [dm6]	G	A	3.387e^-4	0.713	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	15266014	3R_15266014_DEL [dm3] 3R_19440292_DEL [dm6]	TTCAACGGCGA...	T	3.391e^-4	0.713	INTRON CG31221
2R	18951704	2R_18951704_SNP [dm3] 2R_23064181_SNP [dm6]	A	T	3.398e^-4	0.713	NON_SYNONYMOUS_CODING CG9890 UPSTREAM PPO3	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	14706525	2R_14706525_DEL [dm3] 2R_18819020_DEL [dm6]	TATATTCAT	T	3.404e^-4	0.713	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14706537	2R_14706537_SNP [dm3] 2R_18819032_SNP [dm6]	T	A	3.404e^-4	0.713	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26572951	3R_26572951_SNP [dm3] 3R_30747229_SNP [dm6]	G	C	3.412e^-4	0.713	UPSTREAM Npc2h & 1 other INTERGENIC
2L	15260449	2L_15260449_SNP [dm3] 2L_15260449_SNP [dm6]	C	A	3.414e^-4	0.713	DOWNSTREAM yuri INTRON yuri
2L	1610872	2L_1610872_SNP [dm3] 2L_1610872_SNP [dm6]	C	T	3.414e^-4	0.713	NON_SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1610973	2L_1610973_SNP [dm3] 2L_1610973_SNP [dm6]	T	C	3.414e^-4	0.713	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1611896	2L_1611896_SNP [dm3] 2L_1611896_SNP [dm6]	C	T	3.414e^-4	0.713	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	404496	2L_404496_SNP [dm3] 2L_404496_SNP [dm6]	T	G	3.414e^-4	0.713	INTRON RpI135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	404498	2L_404498_DEL [dm3] 2L_404498_DEL [dm6]	GC	G	3.414e^-4	0.713	INTRON RpI135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	4465692	X_4465692_SNP [dm3] X_4571659_SNP [dm6]	C	T	3.414e^-4	0.713	NON_SYNONYMOUS_CODING CG12684 INTRON CR32773
X	4466017	X_4466017_SNP [dm3] X_4571984_SNP [dm6]	G	C	3.414e^-4	0.713	UPSTREAM CG12684 INTRON CR32773
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	3.417e^-4	0.713	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
2L	3727371	2L_3727371_SNP [dm3] 2L_3727371_SNP [dm6]	T	A	3.421e^-4	0.713	UTR_3_PRIME Shaw
2R	5381899	2R_5381899_DEL [dm3] 2R_9494394_DEL [dm6]	ATTCGGCA	A	3.426e^-4	0.713	UTR_5_PRIME Wnt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5275635	X_5275635_SNP [dm3] X_5381602_SNP [dm6]	T	C	3.427e^-4	0.713	INTRON SK
3L	16223929	3L_16223929_SNP [dm3] 3L_16230829_SNP [dm6]	A	G	3.431e^-4	0.713	UTR_3_PRIME CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
X	3005537	X_3005537_INS [dm3] X_3111504_INS [dm6]	A	AA	3.433e^-4	0.713	INTRON kirre
2R	606557	2R_606557_SNP [dm3] 2R_4719052_SNP [dm6]	G	C	3.437e^-4	0.713	INTRON Nipped-B	transposable element FlyBase
2L	2826145	2L_2826145_SNP [dm3] 2L_2826145_SNP [dm6]	T	C	3.438e^-4	0.713	UPSTREAM CG3123 INTRON Duox
3R	25161815	3R_25161815_SNP [dm3] 3R_29336093_SNP [dm6]	C	T	3.440e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15855370	3R_15855370_SNP [dm3] 3R_20029648_SNP [dm6]	A	G	3.440e^-4	0.713	UTR_3_PRIME trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13094984	2R_13094984_SNP [dm3] 2R_17207479_SNP [dm6]	T	G	3.449e^-4	0.713	INTERGENIC
3R	14349507	3R_14349507_SNP [dm3] 3R_18523785_SNP [dm6]	C	T	3.452e^-4	0.713	INTRON fru
X	3939548	X_3939548_SNP [dm3] X_4045515_SNP [dm6]	T	A	3.457e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20215611	3R_20215611_SNP [dm3] 3R_24389889_SNP [dm6]	G	A	3.460e^-4	0.713	UPSTREAM CG13615 INTRON CG5768
3R	20215613	3R_20215613_SNP [dm3] 3R_24389891_SNP [dm6]	A	G	3.460e^-4	0.713	UPSTREAM CG13615 INTRON CG5768
3L	7635064	3L_7635064_SNP [dm3] 3L_7641964_SNP [dm6]	A	C	3.468e^-4	0.713	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5878794	3L_5878794_SNP [dm3] 3L_5885694_SNP [dm6]	C	A	3.478e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14469945	2L_14469945_SNP [dm3] 2L_14469945_SNP [dm6]	T	A	3.481e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14028182	2L_14028182_SNP [dm3] 2L_14028182_SNP [dm6]	C	T	3.482e^-4	0.713	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23649585	3L_23649585_SNP [dm3] 3L_23656485_SNP [dm6]	C	T	3.483e^-4	0.713	INTRON AGO3	transposable element FlyBase
2R	14559227	2R_14559227_INS [dm3] 2R_18671722_INS [dm6]	A	ACCA	3.490e^-4	0.713	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18007667	3L_18007667_SNP [dm3] 3L_18014567_SNP [dm6]	G	C	3.498e^-4	0.713	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14223748	2L_14223748_INS [dm3] 2L_14223748_INS [dm6]	A	ACAAA	3.520e^-4	0.713	INTRON Dyrk2
2L	15650202	2L_15650202_SNP [dm3] 2L_15650202_SNP [dm6]	A	T	3.522e^-4	0.713	SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_inv
3R	25117448	3R_25117448_SNP [dm3] 3R_29291726_SNP [dm6]	C	G	3.522e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25117489	3R_25117489_SNP [dm3] 3R_29291767_SNP [dm6]	G	T	3.522e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2686095	2L_2686095_SNP [dm3] 2L_2686095_SNP [dm6]	G	A	3.526e^-4	0.713	INTRON CG31690
3L	4889312	3L_4889312_SNP [dm3] 3L_4889312_SNP [dm6]	C	A	3.529e^-4	0.713	SYNONYMOUS_CODING CG17150
X	9599716	X_9599716_SNP [dm3] X_9705683_SNP [dm6]	T	A	3.530e^-4	0.713	INTERGENIC
3R	18162870	3R_18162870_SNP [dm3] 3R_22337148_SNP [dm6]	A	G	3.530e^-4	0.713	NON_SYNONYMOUS_CODING CG5388
3L	18638767	3L_18638767_SNP [dm3] 3L_18645667_SNP [dm6]	A	G	3.536e^-4	0.713	INTRON MYPT-75D
X	4537493	X_4537493_SNP [dm3] X_4643460_SNP [dm6]	T	G	3.536e^-4	0.713	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3005896	X_3005896_SNP [dm3] X_3111863_SNP [dm6]	C	T	3.537e^-4	0.713	INTRON kirre
3R	18931062	3R_18931062_SNP [dm3] 3R_23105340_SNP [dm6]	T	A	3.543e^-4	0.713	INTRON CG13830
3R	13539943	3R_13539943_INS [dm3] 3R_17714221_INS [dm6]	T	ACATGTG	3.544e^-4	0.713	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19145608	2R_19145608_INS [dm3] 2R_23258085_INS [dm6]	T	TGT	3.551e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15158005	X_15158005_SNP [dm3] X_15263972_SNP [dm6]	A	T	3.553e^-4	0.713	INTERGENIC
3R	12713528	3R_12713528_SNP [dm3] 3R_16887806_SNP [dm6]	T	C	3.580e^-4	0.713	INTRON iab-8
2L	1032862	2L_1032862_SNP [dm3] 2L_1032862_SNP [dm6]	G	A	3.582e^-4	0.713	INTRON IA-2
3R	8580570	3R_8580570_DEL [dm3] 3R_12754848_DEL [dm6]	TA	T	3.584e^-4	0.713	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17567266	2L_17567266_SNP [dm3] 2L_17567266_SNP [dm6]	A	T	3.585e^-4	0.713	DOWNSTREAM mir-124 INTERGENIC
2L	1090349	2L_1090349_SNP [dm3] 2L_1090349_SNP [dm6]	A	C	3.593e^-4	0.713	INTRON CG4629
2L	13761030	2L_13761030_SNP [dm3] 2L_13761030_SNP [dm6]	T	C	3.593e^-4	0.713	INTRON TM9SF4
2R	20106920	2R_20106920_SNP [dm3] 2R_24219397_SNP [dm6]	C	A	3.596e^-4	0.713	INTRON CG30419
2R	16702778	2R_16702778_SNP [dm3] 2R_20815273_SNP [dm6]	G	A	3.596e^-4	0.713	INTERGENIC
3L	10418500	3L_10418500_SNP [dm3] 3L_10425400_SNP [dm6]	T	C	3.598e^-4	0.713	INTERGENIC
X	5719404	X_5719404_SNP [dm3] X_5825371_SNP [dm6]	C	T	3.612e^-4	0.713	INTRON CG15765
2L	14469973	2L_14469973_SNP [dm3] 2L_14469973_SNP [dm6]	C	T	3.616e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14469975	2L_14469975_SNP [dm3] 2L_14469975_SNP [dm6]	T	C	3.616e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20284757	3R_20284757_SNP [dm3] 3R_24459035_SNP [dm6]	C	A	3.619e^-4	0.713	INTERGENIC
3R	15646309	3R_15646309_SNP [dm3] 3R_19820587_SNP [dm6]	C	G	3.628e^-4	0.713	INTRON bnl	TF binding site mE1_TFBS_chinmo
2L	11395268	2L_11395268_SNP [dm3] 2L_11395268_SNP [dm6]	G	A	3.632e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
3R	18798464	3R_18798464_SNP [dm3] 3R_22972742_SNP [dm6]	G	T	3.657e^-4	0.713	INTERGENIC
3R	25112771	3R_25112771_SNP [dm3] 3R_29287049_SNP [dm6]	A	G	3.665e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18489299	3R_18489299_SNP [dm3] 3R_22663577_SNP [dm6]	G	A	3.677e^-4	0.713	INTRON CG45058
3R	24813614	3R_24813614_SNP [dm3] 3R_28987892_SNP [dm6]	G	A	3.677e^-4	0.713	INTERGENIC
3R	25509585	3R_25509585_SNP [dm3] 3R_29683863_SNP [dm6]	C	T	3.682e^-4	0.713	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
3R	22402423	3R_22402423_DEL [dm3] 3R_26576701_DEL [dm6]	AGAGTTAATGAA...	A	3.686e^-4	0.713	UTR_3_PRIME scrib INTRON scrib
3R	22402456	3R_22402456_SNP [dm3] 3R_26576734_SNP [dm6]	C	A	3.686e^-4	0.713	UTR_3_PRIME scrib INTRON scrib
3R	25489992	3R_25489992_SNP [dm3] 3R_29664270_SNP [dm6]	G	C	3.703e^-4	0.713	UPSTREAM ppk21 INTERGENIC
X	1469587	X_1469587_SNP [dm3] X_1575554_SNP [dm6]	A	G	3.710e^-4	0.713	UTR_5_PRIME br INTRON Mur2B
3L	6757216	3L_6757216_SNP [dm3] 3L_6764116_SNP [dm6]	A	T	3.717e^-4	0.713	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16497527	3L_16497527_SNP [dm3] 3L_16504427_SNP [dm6]	C	A	3.726e^-4	0.713	SYNONYMOUS_CODING CG43373 UTR_3_PRIME CG43373
3R	22520694	3R_22520694_SNP [dm3] 3R_26694972_SNP [dm6]	C	G	3.733e^-4	0.713	INTERGENIC
2L	12864776	2L_12864776_SNP [dm3] 2L_12864776_SNP [dm6]	C	T	3.733e^-4	0.713	INTERGENIC
2L	12864783	2L_12864783_SNP [dm3] 2L_12864783_SNP [dm6]	A	G	3.733e^-4	0.713	INTERGENIC
2L	18231648	2L_18231648_SNP [dm3] 2L_18231648_SNP [dm6]	C	T	3.738e^-4	0.713	INTRON CG42750
3R	25518523	3R_25518523_SNP [dm3] 3R_29692801_SNP [dm6]	G	A	3.741e^-4	0.713	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1870613	3L_1870613_SNP [dm3] 3L_1870613_SNP [dm6]	T	C	3.752e^-4	0.713	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18179640	X_18179640_SNP [dm3] X_18285607_SNP [dm6]	C	T	3.758e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	21457806	3R_21457806_SNP [dm3] 3R_25632084_SNP [dm6]	A	G	3.771e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21457849	3R_21457849_SNP [dm3] 3R_25632127_SNP [dm6]	C	T	3.771e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22902074	3R_22902074_SNP [dm3] 3R_27076352_SNP [dm6]	G	A	3.771e^-4	0.713	INTRON CG14257	TF binding site mE1_TFBS_Trl
2R	12415297	2R_12415297_SNP [dm3] 2R_16527792_SNP [dm6]	A	T	3.772e^-4	0.713	INTRON Sema-2a
3L	10774199	3L_10774199_SNP [dm3] 3L_10781099_SNP [dm6]	C	T	3.786e^-4	0.713	INTERGENIC
3R	26569478	3R_26569478_SNP [dm3] 3R_30743756_SNP [dm6]	G	T	3.786e^-4	0.713	NON_SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3R	26569490	3R_26569490_SNP [dm3] 3R_30743768_SNP [dm6]	T	G	3.786e^-4	0.713	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3L	10579537	3L_10579537_SNP [dm3] 3L_10586437_SNP [dm6]	C	T	3.799e^-4	0.713	INTRON A2bp1
3R	13454698	3R_13454698_SNP [dm3] 3R_17628976_SNP [dm6]	G	T	3.806e^-4	0.713	NON_SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2R	8307374	2R_8307374_SNP [dm3] 2R_12419869_SNP [dm6]	T	C	3.817e^-4	0.713	NON_SYNONYMOUS_CODING CG8834 UPSTREAM CG42782 DOWNSTREAM CG8834
2R	16014068	2R_16014068_DEL [dm3] 2R_20126563_DEL [dm6]	CC	C	3.835e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26749638	3R_26749638_SNP [dm3] 3R_30923916_SNP [dm6]	G	C	3.841e^-4	0.713	INTRON Ptx1	TF binding site mE1_TFBS_cad
X	13536640	X_13536640_SNP [dm3] X_13642607_SNP [dm6]	T	C	3.847e^-4	0.713	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	554818	3L_554818_SNP [dm3] 3L_554818_SNP [dm6]	C	G	3.847e^-4	0.713	INTRON hipk
3R	22921582	3R_22921582_DEL [dm3] 3R_27095860_DEL [dm6]	CA	C	3.862e^-4	0.713	DOWNSTREAM eater & 1 other INTERGENIC
2L	2740066	2L_2740066_SNP [dm3] 2L_2740066_SNP [dm6]	G	C	3.880e^-4	0.713	UTR_5_PRIME Hrs UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	2740069	2L_2740069_SNP [dm3] 2L_2740069_SNP [dm6]	C	T	3.880e^-4	0.713	UTR_5_PRIME Hrs UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	10369719	3L_10369719_SNP [dm3] 3L_10376619_SNP [dm6]	T	G	3.881e^-4	0.713	INTERGENIC
X	5077622	X_5077622_DEL [dm3] X_5183589_DEL [dm6]	AATA	A	3.894e^-4	0.713	INTRON rg & 1 other
2R	7204252	2R_7204252_SNP [dm3] 2R_11316747_SNP [dm6]	G	A	3.896e^-4	0.713	SYNONYMOUS_CODING nompA
2R	11551981	2R_11551981_INS [dm3] 2R_15664476_INS [dm6]	T	TT	3.898e^-4	0.713	INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	12799556	3R_12799556_SNP [dm3] 3R_16973834_SNP [dm6]	T	A	3.907e^-4	0.713	INTERGENIC
2R	3742392	2R_3742392_DEL [dm3] 2R_7854887_DEL [dm6]	AAA	A	3.925e^-4	0.713	INTRON Dgk
X	12344474	X_12344474_SNP [dm3] X_12450441_SNP [dm6]	A	G	3.937e^-4	0.713	INTRON Pkcdelta
3R	25840291	3R_25840291_INS [dm3] 3R_30014569_INS [dm6]	A	ATGTA	3.939e^-4	0.713	DOWNSTREAM Mgat2 INTRON CG7920	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13663215	2R_13663215_SNP [dm3] 2R_17775710_SNP [dm6]	G	A	3.940e^-4	0.713	SPLICE_SITE_REGION fab1 & 1 other INTRON fab1 & 1 other
2R	9463297	2R_9463297_SNP [dm3] 2R_13575792_SNP [dm6]	A	C	3.940e^-4	0.713	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2L	13725376	2L_13725376_DEL [dm3] 2L_13725376_DEL [dm6]	ATCAG	A	3.945e^-4	0.713	INTERGENIC
2L	14059846	2L_14059846_SNP [dm3] 2L_14059846_SNP [dm6]	A	C	3.945e^-4	0.713	INTRON nAChRalpha5
2L	14145390	2L_14145390_SNP [dm3] 2L_14145390_SNP [dm6]	G	T	3.945e^-4	0.713	INTRON CG17341
2L	6466522	2L_6466522_SNP [dm3] 2L_6466522_SNP [dm6]	G	T	3.945e^-4	0.713	UTR_3_PRIME CG9531 UPSTREAM CG16947
3L	9492852	3L_9492852_SNP [dm3] 3L_9499752_SNP [dm6]	C	G	3.951e^-4	0.713	INTRON path
3R	26569846	3R_26569846_SNP [dm3] 3R_30744124_SNP [dm6]	C	T	3.954e^-4	0.713	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3R	21798141	3R_21798141_SNP [dm3] 3R_25972419_SNP [dm6]	C	A	3.956e^-4	0.713	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15651794	2L_15651794_SNP [dm3] 2L_15651794_SNP [dm6]	C	T	3.957e^-4	0.713	INTRON CG4587
2L	15652157	2L_15652157_SNP [dm3] 2L_15652157_SNP [dm6]	A	T	3.957e^-4	0.713	INTRON CG4587
2L	13950814	2L_13950814_SNP [dm3] 2L_13950814_SNP [dm6]	A	G	3.958e^-4	0.713	INTRON Ance-3
3R	10039871	3R_10039871_SNP [dm3] 3R_14214149_SNP [dm6]	A	G	3.967e^-4	0.713	SYNONYMOUS_CODING Dop1R1
X	5379250	X_5379250_DEL [dm3] X_5485217_DEL [dm6]	ACCG	C	3.967e^-4	0.713	INTRON SPR
3L	13904998	3L_13904998_SNP [dm3] 3L_13911898_SNP [dm6]	T	A	3.973e^-4	0.713	INTRON Rgl
X	4466149	X_4466149_SNP [dm3] X_4572116_SNP [dm6]	G	A	3.974e^-4	0.713	UPSTREAM CG12684 INTRON CR32773
2L	9638967	2L_9638967_SNP [dm3] 2L_9638967_SNP [dm6]	C	T	3.980e^-4	0.713	INTRON Apoltp
X	4466158	X_4466158_SNP [dm3] X_4572125_SNP [dm6]	T	G	3.982e^-4	0.713	UPSTREAM CG12684 INTRON CR32773
X	5196857	X_5196857_SNP [dm3] X_5302824_SNP [dm6]	T	G	3.983e^-4	0.713	UTR_3_PRIME CG42749 DOWNSTREAM CG3323 INTRON CG42749
2L	8718404	2L_8718404_SNP [dm3] 2L_8718404_SNP [dm6]	C	T	3.983e^-4	0.713	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9486523	2R_9486523_SNP [dm3] 2R_13599018_SNP [dm6]	C	T	3.983e^-4	0.713	DOWNSTREAM S-Lap5 INTERGENIC
X	981594	X_981594_SNP [dm3] X_1087561_SNP [dm6]	G	C	3.984e^-4	0.713	INTRON CR44779 & 1 other EXON CR44779
X	1380276	X_1380276_SNP [dm3] X_1486243_SNP [dm6]	C	G	3.985e^-4	0.713	UTR_3_PRIME Nmdar2 INTRON inc
X	16023102	X_16023102_DEL [dm3] X_16129069_DEL [dm6]	TGGT	T	3.986e^-4	0.713	INTRON disco-r
2L	10539401	2L_10539401_SNP [dm3] 2L_10539401_SNP [dm6]	G	A	3.998e^-4	0.713	INTERGENIC
2L	7693153	2L_7693153_SNP [dm3] 2L_7693153_SNP [dm6]	A	G	4.000e^-4	0.713	NON_SYNONYMOUS_CODING CG43235 UPSTREAM CG7025 DOWNSTREAM Tep2
X	17502800	X_17502800_SNP [dm3] X_17608767_SNP [dm6]	G	A	4.005e^-4	0.713	INTERGENIC
X	17502878	X_17502878_SNP [dm3] X_17608845_SNP [dm6]	T	C	4.005e^-4	0.713	INTERGENIC
3L	2915182	3L_2915182_SNP [dm3] 3L_2915182_SNP [dm6]	A	T	4.042e^-4	0.713	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo
2L	7292688	2L_7292688_SNP [dm3] 2L_7292688_SNP [dm6]	G	C	4.043e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	514437	3L_514437_SNP [dm3] 3L_514437_SNP [dm6]	C	A	4.052e^-4	0.713	INTRON klar
3L	514442	3L_514442_SNP [dm3] 3L_514442_SNP [dm6]	A	T	4.052e^-4	0.713	INTRON klar
2L	10345272	2L_10345272_SNP [dm3] 2L_10345272_SNP [dm6]	G	T	4.071e^-4	0.713	INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	5885638	2L_5885638_SNP [dm3] 2L_5885638_SNP [dm6]	T	C	4.076e^-4	0.713	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
X	8018619	X_8018619_SNP [dm3] X_8124586_SNP [dm6]	A	T	4.076e^-4	0.713	INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14462233	2L_14462233_INS [dm3] 2L_14462233_INS [dm6]	C	CCTCAAAACAAGCC...	4.082e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6241001	2R_6241001_SNP [dm3] 2R_10353496_SNP [dm6]	T	G	4.084e^-4	0.713	UTR_5_PRIME CG12907 UPSTREAM CG43171 & 2 others INTRON CG42732
3L	18698965	3L_18698965_SNP [dm3] 3L_18705865_SNP [dm6]	T	A	4.084e^-4	0.713	INTERGENIC
3R	13438060	3R_13438060_SNP [dm3] 3R_17612338_SNP [dm6]	A	C	4.090e^-4	0.713	UPSTREAM Edg91 & 1 other INTERGENIC
3R	23888090	3R_23888090_SNP [dm3] 3R_28062368_SNP [dm6]	C	T	4.090e^-4	0.713	INTRON CG34362
3L	11137560	3L_11137560_SNP [dm3] 3L_11144460_SNP [dm6]	G	T	4.109e^-4	0.713	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13904905	3L_13904905_SNP [dm3] 3L_13911805_SNP [dm6]	A	G	4.121e^-4	0.713	INTRON Rgl
3L	13904911	3L_13904911_SNP [dm3] 3L_13911811_SNP [dm6]	C	T	4.121e^-4	0.713	INTRON Rgl
2L	17158979	2L_17158979_SNP [dm3] 2L_17158979_SNP [dm6]	T	C	4.123e^-4	0.713	INTRON beat-IIIa & 1 other
3R	25489955	3R_25489955_SNP [dm3] 3R_29664233_SNP [dm6]	T	C	4.134e^-4	0.713	UPSTREAM ppk21 INTERGENIC
2R	13094996	2R_13094996_SNP [dm3] 2R_17207491_SNP [dm6]	G	A	4.140e^-4	0.713	INTERGENIC
2R	13095017	2R_13095017_SNP [dm3] 2R_17207512_SNP [dm6]	T	G	4.140e^-4	0.713	INTERGENIC
2R	13095056	2R_13095056_SNP [dm3] 2R_17207551_SNP [dm6]	G	T	4.140e^-4	0.713	INTERGENIC
2R	17854072	2R_17854072_SNP [dm3] 2R_21966567_SNP [dm6]	A	C	4.158e^-4	0.713	INTRON ppk9
2R	17854077	2R_17854077_SNP [dm3] 2R_21966572_SNP [dm6]	A	T	4.158e^-4	0.713	INTRON ppk9
3L	4887093	3L_4887093_SNP [dm3] 3L_4887093_SNP [dm6]	T	G	4.165e^-4	0.713	INTRON CG17150
X	3484674	X_3484674_SNP [dm3] X_3590641_SNP [dm6]	G	C	4.167e^-4	0.713	INTRON AstA-R1
2L	6671666	2L_6671666_INS [dm3] 2L_6671666_INS [dm6]	G	GG	4.169e^-4	0.713	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
2R	13664141	2R_13664141_SNP [dm3] 2R_17776636_SNP [dm6]	T	C	4.177e^-4	0.713	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12852016	2R_12852016_SNP [dm3] 2R_16964511_SNP [dm6]	A	G	4.177e^-4	0.713	EXON CR44376
3R	6394648	3R_6394648_SNP [dm3] 3R_10568926_SNP [dm6]	T	A	4.178e^-4	0.713	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	10544543	X_10544543_SNP [dm3] X_10650510_SNP [dm6]	C	A	4.186e^-4	0.713	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20919128	X_20919128_SNP [dm3] X_21048101_SNP [dm6]	T	G	4.189e^-4	0.713	SYNONYMOUS_CODING Cbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14456068	2L_14456068_SNP [dm3] 2L_14456068_SNP [dm6]	T	G	4.191e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	7238725	2L_7238725_INS [dm3] 2L_7238725_INS [dm6]	C	CC	4.194e^-4	0.713	INTRON Ndae1
2L	17610004	2L_17610004_SNP [dm3] 2L_17610004_SNP [dm6]	C	T	4.201e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22452488	3R_22452488_SNP [dm3] 3R_26626766_SNP [dm6]	A	C	4.205e^-4	0.713	UPSTREAM TwdlO INTERGENIC
2R	5757543	2R_5757543_MNP [dm3] 2R_9870038_MNP [dm6]	ATG	TGA	4.209e^-4	0.713	DOWNSTREAM CR45138 INTRON cbx
2R	8528288	2R_8528288_SNP [dm3] 2R_12640783_SNP [dm6]	G	T	4.210e^-4	0.713	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
3R	16805429	3R_16805429_SNP [dm3] 3R_20979707_SNP [dm6]	G	A	4.211e^-4	0.713	INTRON Calx
X	3139048	X_3139048_SNP [dm3] X_3245015_SNP [dm6]	A	G	4.224e^-4	0.713	UPSTREAM ng4 INTRON dnc
X	3139050	X_3139050_SNP [dm3] X_3245017_SNP [dm6]	A	T	4.224e^-4	0.713	UPSTREAM ng4 INTRON dnc
2L	2949126	2L_2949126_SNP [dm3] 2L_2949126_SNP [dm6]	T	C	4.233e^-4	0.713	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3L	1533551	3L_1533551_SNP [dm3] 3L_1533551_SNP [dm6]	A	G	4.235e^-4	0.713	SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9804082	2L_9804082_SNP [dm3] 2L_9804082_SNP [dm6]	T	C	4.235e^-4	0.713	INTRON nAChRalpha6
2L	8169993	2L_8169993_SNP [dm3] 2L_8169993_SNP [dm6]	T	C	4.243e^-4	0.713	INTRON Piezo
2L	1734911	2L_1734911_DEL [dm3] 2L_1734911_DEL [dm6]	ATCTTGGGA	A	4.246e^-4	0.713	INTRON CG17646
3L	15606968	3L_15606968_SNP [dm3] 3L_15613868_SNP [dm6]	T	A	4.256e^-4	0.713	SYNONYMOUS_CODING comm3
2R	19980773	2R_19980773_SNP [dm3] 2R_24093250_SNP [dm6]	C	T	4.266e^-4	0.713	INTRON gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2479058	3L_2479058_DEL [dm3] 3L_2479058_DEL [dm6]	CGAGTAAAAGGCTCACACCT...	AAATTC	4.278e^-4	0.713	UPSTREAM Cyp4d20 INTRON CG45186
3R	13539866	3R_13539866_SNP [dm3] 3R_17714144_SNP [dm6]	T	C	4.286e^-4	0.713	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17584434	X_17584434_DEL [dm3] X_17690401_DEL [dm6]	AA	A	4.288e^-4	0.713	INTRON chas
2R	18378806	2R_18378806_SNP [dm3] 2R_22491301_SNP [dm6]	G	A	4.289e^-4	0.713	SYNONYMOUS_CODING CG4554 UPSTREAM CG4610	TF binding site mE1_TFBS_cad
3L	10266221	3L_10266221_SNP [dm3] 3L_10273121_SNP [dm6]	T	C	4.291e^-4	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	17811762	2R_17811762_SNP [dm3] 2R_21924257_SNP [dm6]	T	A	4.293e^-4	0.713	INTRON Fili
3L	16228328	3L_16228328_SNP [dm3] 3L_16235228_SNP [dm6]	A	C	4.303e^-4	0.713	NON_SYNONYMOUS_CODING l_3_72Dp
3L	11391857	3L_11391857_SNP [dm3] 3L_11398757_SNP [dm6]	A	T	4.306e^-4	0.713	DOWNSTREAM CG44362 INTERGENIC
2R	7814064	2R_7814064_SNP [dm3] 2R_11926559_SNP [dm6]	G	T	4.309e^-4	0.713	INTERGENIC
3R	9983282	3R_9983282_SNP [dm3] 3R_14157560_SNP [dm6]	A	G	4.313e^-4	0.713	UTR_3_PRIME CG31327 UPSTREAM CG31533
2L	1146492	2L_1146492_SNP [dm3] 2L_1146492_SNP [dm6]	G	A	4.317e^-4	0.713	INTRON MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19371146	2L_19371146_SNP [dm3] 2L_19371146_SNP [dm6]	C	T	4.323e^-4	0.713	SYNONYMOUS_CODING CG17349
2L	7727097	2L_7727097_SNP [dm3] 2L_7727097_SNP [dm6]	T	C	4.324e^-4	0.713	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
X	4401251	X_4401251_SNP [dm3] X_4507218_SNP [dm6]	T	C	4.328e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401260	X_4401260_INS [dm3] X_4507227_INS [dm6]	T	TCT	4.328e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401268	X_4401268_SNP [dm3] X_4507235_SNP [dm6]	T	A	4.328e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401279	X_4401279_SNP [dm3] X_4507246_SNP [dm6]	T	A	4.328e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16753764	2L_16753764_SNP [dm3] 2L_16753764_SNP [dm6]	G	C	4.332e^-4	0.713	UPSTREAM yellow-b DOWNSTREAM CG17912 INTERGENIC
2R	7376692	2R_7376692_SNP [dm3] 2R_11489187_SNP [dm6]	C	T	4.346e^-4	0.713	INTRON inv
3R	13680469	3R_13680469_SNP [dm3] 3R_17854747_SNP [dm6]	G	T	4.352e^-4	0.713	INTRON tinc
3R	22452204	3R_22452204_SNP [dm3] 3R_26626482_SNP [dm6]	G	A	4.361e^-4	0.713	SYNONYMOUS_CODING TwdlO UPSTREAM TwdlL	TF binding site mE1_TFBS_chinmo
2L	7012816	2L_7012816_SNP [dm3] 2L_7012816_SNP [dm6]	C	G	4.362e^-4	0.713	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
2R	1537153	2R_1537153_SNP [dm3] 2R_5649648_SNP [dm6]	A	G	4.364e^-4	0.713	INTRON CG11665	transposable element FlyBase
X	14392678	X_14392678_SNP [dm3] X_14498645_SNP [dm6]	G	C	4.365e^-4	0.713	INTERGENIC
X	14392682	X_14392682_SNP [dm3] X_14498649_SNP [dm6]	A	T	4.365e^-4	0.713	INTERGENIC
X	14392683	X_14392683_SNP [dm3] X_14498650_SNP [dm6]	G	A	4.365e^-4	0.713	INTERGENIC
2L	3068193	2L_3068193_SNP [dm3] 2L_3068193_SNP [dm6]	A	T	4.366e^-4	0.713	DOWNSTREAM toc & 1 other INTERGENIC
3R	12945216	3R_12945216_DEL [dm3] 3R_17119494_DEL [dm6]	TT	T	4.381e^-4	0.713	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12945221	3R_12945221_SNP [dm3] 3R_17119499_SNP [dm6]	T	A	4.381e^-4	0.713	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20371274	2R_20371274_SNP [dm3] 2R_24483751_SNP [dm6]	T	C	4.385e^-4	0.713	INTRON CG13579
3R	4932866	3R_4932866_SNP [dm3] 3R_9107144_SNP [dm6]	A	G	4.389e^-4	0.713	INTRON pum
3L	9231698	3L_9231698_SNP [dm3] 3L_9238598_SNP [dm6]	T	C	4.393e^-4	0.713	INTERGENIC
3R	19163087	3R_19163087_SNP [dm3] 3R_23337365_SNP [dm6]	T	C	4.393e^-4	0.713	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4986587	X_4986587_SNP [dm3] X_5092554_SNP [dm6]	A	G	4.393e^-4	0.713	INTRON rg & 1 other
2R	8510979	2R_8510979_SNP [dm3] 2R_12623474_SNP [dm6]	C	G	4.402e^-4	0.713	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
2L	14252455	2L_14252455_SNP [dm3] 2L_14252455_SNP [dm6]	G	A	4.433e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15402305	3L_15402305_SNP [dm3] 3L_15409205_SNP [dm6]	A	C	4.452e^-4	0.713	DOWNSTREAM CG33259 INTERGENIC
3R	25858941	3R_25858941_SNP [dm3] 3R_30033219_SNP [dm6]	A	G	4.458e^-4	0.713	SPLICE_SITE_REGION Axn INTRON Axn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25858967	3R_25858967_SNP [dm3] 3R_30033245_SNP [dm6]	G	A	4.458e^-4	0.713	INTRON Axn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22110349	3R_22110349_SNP [dm3] 3R_26284627_SNP [dm6]	G	T	4.458e^-4	0.713	INTERGENIC
2R	18343965	2R_18343965_SNP [dm3] 2R_22456460_SNP [dm6]	G	A	4.470e^-4	0.713	INTRON CG10384
2L	10064473	2L_10064473_SNP [dm3] 2L_10064473_SNP [dm6]	G	T	4.473e^-4	0.713	UTR_3_PRIME CG44153 DOWNSTREAM Spn31A
3L	11351693	3L_11351693_SNP [dm3] 3L_11358593_SNP [dm6]	T	C	4.474e^-4	0.713	INTERGENIC
X	14767742	X_14767742_SNP [dm3] X_14873709_SNP [dm6]	A	T	4.474e^-4	0.713	INTRON Flo2
3L	15867538	3L_15867538_SNP [dm3] 3L_15874438_SNP [dm6]	G	C	4.476e^-4	0.713	INTRON pHCl
2R	8209713	2R_8209713_SNP [dm3] 2R_12322208_SNP [dm6]	G	A	4.478e^-4	0.713	UTR_3_PRIME CG13163 DOWNSTREAM CG8841
3R	25858947	3R_25858947_SNP [dm3] 3R_30033225_SNP [dm6]	A	G	4.487e^-4	0.713	INTRON Axn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25489972	3R_25489972_SNP [dm3] 3R_29664250_SNP [dm6]	A	G	4.508e^-4	0.713	UPSTREAM ppk21 INTERGENIC
3R	25489987	3R_25489987_SNP [dm3] 3R_29664265_SNP [dm6]	T	A	4.508e^-4	0.713	UPSTREAM ppk21 INTERGENIC
3R	25490032	3R_25490032_SNP [dm3] 3R_29664310_SNP [dm6]	A	G	4.508e^-4	0.713	UPSTREAM ppk21 INTERGENIC
3R	25490035	3R_25490035_SNP [dm3] 3R_29664313_SNP [dm6]	G	A	4.508e^-4	0.713	UPSTREAM ppk21 INTERGENIC
2R	8362340	2R_8362340_SNP [dm3] 2R_12474835_SNP [dm6]	A	G	4.510e^-4	0.713	DOWNSTREAM CG8550 INTRON Dh44-R2
X	12344005	X_12344005_SNP [dm3] X_12449972_SNP [dm6]	A	G	4.524e^-4	0.713	INTRON Pkcdelta
2R	5756713	2R_5756713_SNP [dm3] 2R_9869208_SNP [dm6]	A	G	4.528e^-4	0.713	DOWNSTREAM CR45138 INTRON cbx	transposable element FlyBase
3L	9231814	3L_9231814_SNP [dm3] 3L_9238714_SNP [dm6]	A	T	4.533e^-4	0.713	INTERGENIC
2L	1610976	2L_1610976_SNP [dm3] 2L_1610976_SNP [dm6]	A	G	4.535e^-4	0.713	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16675694	2L_16675694_SNP [dm3] 2L_16675694_SNP [dm6]	C	T	4.543e^-4	0.713	INTRON Trpgamma
3R	26419253	3R_26419253_SNP [dm3] 3R_30593531_SNP [dm6]	G	A	4.556e^-4	0.713	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15580079	2R_15580079_SNP [dm3] 2R_19692574_SNP [dm6]	T	C	4.576e^-4	0.713	EXON CR44506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22998197	3R_22998197_SNP [dm3] 3R_27172475_SNP [dm6]	A	G	4.579e^-4	0.713	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
3L	8199362	3L_8199362_SNP [dm3] 3L_8206262_SNP [dm6]	T	C	4.589e^-4	0.713	INTERGENIC
2R	17806082	2R_17806082_SNP [dm3] 2R_21918577_SNP [dm6]	T	A	4.591e^-4	0.713	INTRON Fili
X	5902180	X_5902180_SNP [dm3] X_6008147_SNP [dm6]	C	G	4.591e^-4	0.713	DOWNSTREAM mab-21 INTERGENIC
X	5902192	X_5902192_INS [dm3] X_6008159_INS [dm6]	G	GTAA	4.591e^-4	0.713	DOWNSTREAM mab-21 INTERGENIC
X	5902204	X_5902204_SNP [dm3] X_6008171_SNP [dm6]	C	A	4.591e^-4	0.713	DOWNSTREAM mab-21 INTERGENIC
3L	5281993	3L_5281993_INS [dm3] 3L_5288893_INS [dm6]	T	TT	4.591e^-4	0.713	INTERGENIC
2R	5756988	2R_5756988_SNP [dm3] 2R_9869483_SNP [dm6]	A	C	4.595e^-4	0.713	DOWNSTREAM CR45138 INTRON cbx
3R	26289817	3R_26289817_SNP [dm3] 3R_30464095_SNP [dm6]	A	T	4.596e^-4	0.713	SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6230294	2R_6230294_SNP [dm3] 2R_10342789_SNP [dm6]	G	A	4.597e^-4	0.713	INTRON CG42732
3L	10571813	3L_10571813_SNP [dm3] 3L_10578713_SNP [dm6]	G	T	4.597e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8514687	2R_8514687_SNP [dm3] 2R_12627182_SNP [dm6]	C	A	4.607e^-4	0.713	INTRON CG17760
3L	15402313	3L_15402313_SNP [dm3] 3L_15409213_SNP [dm6]	C	T	4.614e^-4	0.713	DOWNSTREAM CG33259 INTERGENIC
3R	20193247	3R_20193247_SNP [dm3] 3R_24367525_SNP [dm6]	G	T	4.619e^-4	0.713	UPSTREAM CG42811 & 1 other INTRON CG42812
2R	7762572	2R_7762572_SNP [dm3] 2R_11875067_SNP [dm6]	T	G	4.623e^-4	0.713	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_cad
2R	7762656	2R_7762656_SNP [dm3] 2R_11875151_SNP [dm6]	A	G	4.623e^-4	0.713	SYNONYMOUS_CODING CG13185
2R	8375631	2R_8375631_SNP [dm3] 2R_12488126_SNP [dm6]	A	T	4.623e^-4	0.713	UTR_3_PRIME fdl UPSTREAM CG34234 DOWNSTREAM fdl & 1 other
3R	15897377	3R_15897377_SNP [dm3] 3R_20071655_SNP [dm6]	C	T	4.628e^-4	0.713	INTERGENIC
2R	16925053	2R_16925053_SNP [dm3] 2R_21037548_SNP [dm6]	A	C	4.628e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2914956	3L_2914956_SNP [dm3] 3L_2914956_SNP [dm6]	G	A	4.647e^-4	0.713	DOWNSTREAM CG9970 INTRON Shab
2R	7027986	2R_7027986_SNP [dm3] 2R_11140481_SNP [dm6]	T	A	4.674e^-4	0.713	INTRON CG13229
2L	20500676	2L_20500676_SNP [dm3] 2L_20500676_SNP [dm6]	A	T	4.679e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14311056	3R_14311056_SNP [dm3] 3R_18485334_SNP [dm6]	C	G	4.681e^-4	0.713	INTRON fru
2R	16610827	2R_16610827_SNP [dm3] 2R_20723322_SNP [dm6]	T	C	4.686e^-4	0.713	DOWNSTREAM CR44660 INTRON dpr
2L	15635067	2L_15635067_SNP [dm3] 2L_15635067_SNP [dm6]	A	G	4.691e^-4	0.713	DOWNSTREAM CG18480 INTERGENIC
2L	14642141	2L_14642141_DEL [dm3] 2L_14642141_DEL [dm6]	TT	C	4.696e^-4	0.713	INTRON osp
2L	14642148	2L_14642148_SNP [dm3] 2L_14642148_SNP [dm6]	A	G	4.696e^-4	0.713	INTRON osp
2L	14642152	2L_14642152_SNP [dm3] 2L_14642152_SNP [dm6]	C	G	4.696e^-4	0.713	INTRON osp
2L	15630639	2L_15630639_INS [dm3] 2L_15630639_INS [dm6]	T	TT	4.711e^-4	0.713	INTRON CG18480
3R	12950004	3R_12950004_DEL [dm3] 3R_17124282_DEL [dm6]	TT	C	4.717e^-4	0.713	UPSTREAM CG45079 INTRON cher
3L	2174995	3L_2174995_SNP [dm3] 3L_2174995_SNP [dm6]	T	G	4.720e^-4	0.713	UPSTREAM CG15820 INTERGENIC
2L	9505876	2L_9505876_SNP [dm3] 2L_9505876_SNP [dm6]	T	A	4.723e^-4	0.713	INTRON CG33298
X	10305741	X_10305741_SNP [dm3] X_10411708_SNP [dm6]	A	T	4.727e^-4	0.713	UTR_3_PRIME CG32683	TF binding site mE1_TFBS_kn
3R	9975911	3R_9975911_SNP [dm3] 3R_14150189_SNP [dm6]	G	A	4.738e^-4	0.713	SYNONYMOUS_CODING CG14355	TF binding site mE1_TFBS_cad
2L	14477742	2L_14477742_SNP [dm3] 2L_14477742_SNP [dm6]	A	G	4.744e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10298024	2L_10298024_SNP [dm3] 2L_10298024_SNP [dm6]	A	C	4.763e^-4	0.713	SPLICE_SITE_REGION CYLD SYNONYMOUS_CODING CYLD INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	8677587	3L_8677587_SNP [dm3] 3L_8684487_SNP [dm6]	C	A	4.788e^-4	0.713	INTERGENIC
3R	4224662	3R_4224662_SNP [dm3] 3R_8398940_SNP [dm6]	A	G	4.797e^-4	0.713	INTRON CG45263
3R	10158531	3R_10158531_SNP [dm3] 3R_14332809_SNP [dm6]	C	T	4.801e^-4	0.713	INTRON NK7.1
2R	20162316	2R_20162316_SNP [dm3] 2R_24274793_SNP [dm6]	C	T	4.803e^-4	0.713	UPSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	20162317	2R_20162317_SNP [dm3] 2R_24274794_SNP [dm6]	G	C	4.803e^-4	0.713	UPSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	12799857	3R_12799857_SNP [dm3] 3R_16974135_SNP [dm6]	T	A	4.807e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	17602134	3L_17602134_SNP [dm3] 3L_17609034_SNP [dm6]	T	C	4.815e^-4	0.713	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	12758756	2L_12758756_SNP [dm3] 2L_12758756_SNP [dm6]	G	T	4.815e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2032137	2L_2032137_SNP [dm3] 2L_2032137_SNP [dm6]	G	T	4.815e^-4	0.713	DOWNSTREAM CG42296 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9188103	2L_9188103_SNP [dm3] 2L_9188103_SNP [dm6]	A	G	4.815e^-4	0.713	INTRON tai
2L	7962961	2L_7962961_SNP [dm3] 2L_7962961_SNP [dm6]	T	C	4.819e^-4	0.713	INTRON Snoo
2L	15519624	2L_15519624_SNP [dm3] 2L_15519624_SNP [dm6]	G	A	4.821e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2367629	3L_2367629_SNP [dm3] 3L_2367629_SNP [dm6]	A	T	4.821e^-4	0.713	DOWNSTREAM CG1317 INTERGENIC
3L	3294936	3L_3294936_SNP [dm3] 3L_3294936_SNP [dm6]	T	G	4.821e^-4	0.713	UTR_5_PRIME CG12009 INTRON CG12009
X	5719182	X_5719182_SNP [dm3] X_5825149_SNP [dm6]	T	C	4.821e^-4	0.713	INTRON CG15765
2L	3522907	2L_3522907_SNP [dm3] 2L_3522907_SNP [dm6]	G	T	4.836e^-4	0.713	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	10345235	2L_10345235_SNP [dm3] 2L_10345235_SNP [dm6]	T	G	4.848e^-4	0.713	INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10266007	3L_10266007_SNP [dm3] 3L_10272907_SNP [dm6]	T	C	4.848e^-4	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	2774803	2R_2774803_SNP [dm3] 2R_6887298_SNP [dm6]	G	C	4.853e^-4	0.713	NON_SYNONYMOUS_CODING Spn42De
2R	7192628	2R_7192628_SNP [dm3] 2R_11305123_SNP [dm6]	C	T	4.861e^-4	0.713	DOWNSTREAM Fpps INTRON CG7741	TF binding site mE1_TFBS_sens
X	9515523	X_9515523_SNP [dm3] X_9621490_SNP [dm6]	A	G	4.867e^-4	0.713	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_sens
3R	14492477	3R_14492477_SNP [dm3] 3R_18666755_SNP [dm6]	G	A	4.872e^-4	0.713	SYNONYMOUS_CODING CG31231	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11819850	2L_11819850_SNP [dm3] 2L_11819850_SNP [dm6]	A	G	4.872e^-4	0.713	INTRON Pde1c
2L	11913855	2L_11913855_SNP [dm3] 2L_11913855_SNP [dm6]	C	T	4.872e^-4	0.713	INTRON Pde1c
2L	12855068	2L_12855068_DEL [dm3] 2L_12855068_DEL [dm6]	CTTCTCTTTCGTC...	C	4.872e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3971574	X_3971574_INS [dm3] X_4077541_INS [dm6]	A	ACCCCCAA	4.881e^-4	0.713	INTRON CG43689
3R	9975335	3R_9975335_SNP [dm3] 3R_14149613_SNP [dm6]	G	C	4.893e^-4	0.713	SYNONYMOUS_CODING CG14355
X	4401276	X_4401276_SNP [dm3] X_4507243_SNP [dm6]	C	G	4.898e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	20842460	X_20842460_SNP [dm3] X_20971433_SNP [dm6]	C	A	4.901e^-4	0.713	INTERGENIC
2L	17187141	2L_17187141_SNP [dm3] 2L_17187141_SNP [dm6]	C	T	4.907e^-4	0.713	DOWNSTREAM beat-IIIc INTERGENIC
3L	16496397	3L_16496397_SNP [dm3] 3L_16503297_SNP [dm6]	C	G	4.908e^-4	0.713	NON_SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3797609	3L_3797609_SNP [dm3] 3L_3797609_SNP [dm6]	C	T	4.917e^-4	0.713	INTRON CG32264
3L	3797859	3L_3797859_SNP [dm3] 3L_3797859_SNP [dm6]	A	G	4.917e^-4	0.713	INTRON CG32264
2R	18378797	2R_18378797_SNP [dm3] 2R_22491292_SNP [dm6]	G	T	4.917e^-4	0.713	SYNONYMOUS_CODING CG4554 UPSTREAM CG4610	TF binding site mE1_TFBS_cad
2R	7837924	2R_7837924_SNP [dm3] 2R_11950419_SNP [dm6]	A	T	4.917e^-4	0.713	INTRON CG13188
3L	4598440	3L_4598440_SNP [dm3] 3L_4598440_SNP [dm6]	G	A	4.921e^-4	0.713	UTR_5_PRIME Src64B
3L	10285907	3L_10285907_SNP [dm3] 3L_10292807_SNP [dm6]	G	T	4.925e^-4	0.713	INTERGENIC
2L	9313629	2L_9313629_SNP [dm3] 2L_9313629_SNP [dm6]	T	G	4.927e^-4	0.713	INTERGENIC
2L	5460749	2L_5460749_SNP [dm3] 2L_5460749_SNP [dm6]	A	T	4.929e^-4	0.713	UPSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12418035	2R_12418035_SNP [dm3] 2R_16530530_SNP [dm6]	C	G	4.941e^-4	0.713	INTRON Sema-2a
2L	15445166	2L_15445166_SNP [dm3] 2L_15445166_SNP [dm6]	C	T	4.948e^-4	0.713	INTERGENIC
2L	15445171	2L_15445171_SNP [dm3] 2L_15445171_SNP [dm6]	C	A	4.948e^-4	0.713	INTERGENIC
X	14371760	X_14371760_DEL [dm3] X_14477727_DEL [dm6]	AA	A	4.951e^-4	0.713	INTRON CG9411
X	8790241	X_8790241_SNP [dm3] X_8896208_SNP [dm6]	G	A	4.953e^-4	0.713	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10236703	3L_10236703_SNP [dm3] 3L_10243603_SNP [dm6]	A	G	4.972e^-4	0.713	UPSTREAM CR44541 INTRON Or67c
3R	26803210	3R_26803210_SNP [dm3] 3R_30977488_SNP [dm6]	T	G	4.977e^-4	0.713	UTR_5_PRIME 5-HT7 INTRON 5-HT7
X	13327553	X_13327553_SNP [dm3] X_13433520_SNP [dm6]	A	G	4.980e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15285778	X_15285778_SNP [dm3] X_15391745_SNP [dm6]	T	A	4.987e^-4	0.713	INTRON Cngl
3R	18590970	3R_18590970_SNP [dm3] 3R_22765248_SNP [dm6]	T	C	4.989e^-4	0.713	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9451539	2R_9451539_SNP [dm3] 2R_13564034_SNP [dm6]	T	A	4.990e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	17567285	2L_17567285_SNP [dm3] 2L_17567285_SNP [dm6]	C	A	4.996e^-4	0.713	DOWNSTREAM mir-124 INTERGENIC
3R	16981607	3R_16981607_SNP [dm3] 3R_21155885_SNP [dm6]	C	A	4.996e^-4	0.713	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	9149471	2R_9149471_SNP [dm3] 2R_13261966_SNP [dm6]	C	A	5.008e^-4	0.713	UPSTREAM CG42319 INTRON CG42319
3L	14539892	3L_14539892_SNP [dm3] 3L_14546792_SNP [dm6]	T	A	5.010e^-4	0.713	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3R	19754918	3R_19754918_SNP [dm3] 3R_23929196_SNP [dm6]	G	C	5.012e^-4	0.713	UPSTREAM CG31142 & 2 others DOWNSTREAM Rpt2 INTERGENIC	TF binding site mE1_TFBS_ttk
2R	6864316	2R_6864316_SNP [dm3] 2R_10976811_SNP [dm6]	G	C	5.021e^-4	0.713	INTERGENIC
3L	7540814	3L_7540814_INS [dm3] 3L_7547714_INS [dm6]	T	TA	5.022e^-4	0.713	INTERGENIC
3R	25301074	3R_25301074_SNP [dm3] 3R_29475352_SNP [dm6]	T	C	5.023e^-4	0.713	INTRON Ptp99A
3L	6866176	3L_6866176_SNP [dm3] 3L_6873076_SNP [dm6]	T	G	5.034e^-4	0.713	INTERGENIC
3R	18162631	3R_18162631_SNP [dm3] 3R_22336909_SNP [dm6]	G	T	5.052e^-4	0.713	DOWNSTREAM CG5388 INTRON CG5388
3R	7816503	3R_7816503_SNP [dm3] 3R_11990781_SNP [dm6]	T	C	5.054e^-4	0.713	UPSTREAM mfas INTRON mfas
3R	20734010	3R_20734010_SNP [dm3] 3R_24908288_SNP [dm6]	C	A	5.065e^-4	0.713	INTERGENIC
X	17502846	X_17502846_INS [dm3] X_17608813_INS [dm6]	T	TGTATGGATTACAAT...	5.068e^-4	0.713	INTERGENIC
X	17502852	X_17502852_SNP [dm3] X_17608819_SNP [dm6]	G	A	5.068e^-4	0.713	INTERGENIC
3L	5300811	3L_5300811_INS [dm3] 3L_5307711_INS [dm6]	G	GC	5.081e^-4	0.713	INTERGENIC
3L	14093141	3L_14093141_SNP [dm3] 3L_14100041_SNP [dm6]	T	G	5.084e^-4	0.713	INTERGENIC
3L	5484757	3L_5484757_SNP [dm3] 3L_5491657_SNP [dm6]	G	A	5.086e^-4	0.713	INTERGENIC
2L	17510029	2L_17510029_SNP [dm3] 2L_17510029_SNP [dm6]	A	G	5.092e^-4	0.713	SYNONYMOUS_CODING Dhc36C
2L	3712939	2L_3712939_SNP [dm3] 2L_3712939_SNP [dm6]	A	G	5.094e^-4	0.713	UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9313790	2L_9313790_SNP [dm3] 2L_9313790_SNP [dm6]	A	C	5.094e^-4	0.713	INTERGENIC
2R	7724256	2R_7724256_SNP [dm3] 2R_11836751_SNP [dm6]	C	T	5.096e^-4	0.713	INTRON Sobp
3R	25478354	3R_25478354_SNP [dm3] 3R_29652632_SNP [dm6]	G	T	5.112e^-4	0.713	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	17808222	2L_17808222_SNP [dm3] 2L_17808222_SNP [dm6]	T	A	5.113e^-4	0.713	INTRON CadN2
3R	8884627	3R_8884627_SNP [dm3] 3R_13058905_SNP [dm6]	T	A	5.117e^-4	0.713	INTRON sim	TF binding site mE1_TFBS_Kr
X	3003324	X_3003324_SNP [dm3] X_3109291_SNP [dm6]	T	C	5.126e^-4	0.713	INTRON kirre
3R	23035621	3R_23035621_SNP [dm3] 3R_27209899_SNP [dm6]	A	T	5.130e^-4	0.713	INTERGENIC
3L	14899780	3L_14899780_SNP [dm3] 3L_14906680_SNP [dm6]	T	C	5.132e^-4	0.713	INTRON DCX-EMAP
3L	16230184	3L_16230184_SNP [dm3] 3L_16237084_SNP [dm6]	C	T	5.132e^-4	0.713	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
2L	17016580	2L_17016580_SNP [dm3] 2L_17016580_SNP [dm6]	C	A	5.135e^-4	0.713	INTERGENIC
2R	9881660	2R_9881660_SNP [dm3] 2R_13994155_SNP [dm6]	C	T	5.135e^-4	0.713	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12043029	3R_12043029_SNP [dm3] 3R_16217307_SNP [dm6]	C	G	5.135e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13663863	X_13663863_SNP [dm3] X_13769830_SNP [dm6]	C	T	5.137e^-4	0.713	SYNONYMOUS_CODING rdgB
X	4401275	X_4401275_SNP [dm3] X_4507242_SNP [dm6]	G	A	5.140e^-4	0.713	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9896719	3L_9896719_SNP [dm3] 3L_9903619_SNP [dm6]	T	C	5.140e^-4	0.713	DOWNSTREAM nudE INTERGENIC
3L	8048303	3L_8048303_SNP [dm3] 3L_8055203_SNP [dm6]	T	C	5.140e^-4	0.713	SYNONYMOUS_CODING bip1
X	17502885	X_17502885_INS [dm3] X_17608852_INS [dm6]	T	TGGGGT	5.142e^-4	0.713	INTERGENIC
3R	25230067	3R_25230067_SNP [dm3] 3R_29404345_SNP [dm6]	G	T	5.144e^-4	0.713	INTRON Ptp99A
3L	9140626	3L_9140626_SNP [dm3] 3L_9147526_SNP [dm6]	C	T	5.153e^-4	0.713	UTR_3_PRIME Rdl	TF binding site mE1_TFBS_kn
2R	9784853	2R_9784853_SNP [dm3] 2R_13897348_SNP [dm6]	C	A	5.159e^-4	0.713	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25596644	3R_25596644_SNP [dm3] 3R_29770922_SNP [dm6]	A	C	5.162e^-4	0.713	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12926222	2L_12926222_SNP [dm3] 2L_12926222_SNP [dm6]	T	C	5.171e^-4	0.713	DOWNSTREAM ACXA INTRON ACXE
2L	13729558	2L_13729558_SNP [dm3] 2L_13729558_SNP [dm6]	T	C	5.171e^-4	0.713	INTERGENIC
2L	13730542	2L_13730542_SNP [dm3] 2L_13730542_SNP [dm6]	C	T	5.171e^-4	0.713	INTERGENIC
X	8832119	X_8832119_SNP [dm3] X_8938086_SNP [dm6]	G	C	5.173e^-4	0.713	INTRON rdgA
3R	22603872	3R_22603872_SNP [dm3] 3R_26778150_SNP [dm6]	C	T	5.179e^-4	0.713	INTERGENIC
3L	21591043	3L_21591043_SNP [dm3] 3L_21597943_SNP [dm6]	G	T	5.192e^-4	0.713	UPSTREAM TfAP-2 INTRON TfAP-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14165472	2R_14165472_SNP [dm3] 2R_18277967_SNP [dm6]	G	T	5.199e^-4	0.713	SYNONYMOUS_CODING pen-2 UPSTREAM Ote DOWNSTREAM sbb	TF binding site mE1_TFBS_HSA
2R	8306096	2R_8306096_SNP [dm3] 2R_12418591_SNP [dm6]	T	C	5.204e^-4	0.713	DOWNSTREAM CG42782 & 1 other INTERGENIC
2R	13388154	2R_13388154_SNP [dm3] 2R_17500649_SNP [dm6]	A	G	5.209e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
X	11353562	X_11353562_DEL [dm3] X_11459529_DEL [dm6]	GG	G	5.215e^-4	0.713	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2R	13663231	2R_13663231_SNP [dm3] 2R_17775726_SNP [dm6]	G	A	5.222e^-4	0.713	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981
X	2606506	X_2606506_SNP [dm3] X_2712473_SNP [dm6]	G	A	5.232e^-4	0.713	SYNONYMOUS_CODING CG2685 DOWNSTREAM CG2681	TF binding site mE1_TFBS_chinmo
2L	19337283	2L_19337283_SNP [dm3] 2L_19337283_SNP [dm6]	G	A	5.239e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	20908848	2L_20908848_SNP [dm3] 2L_20908848_SNP [dm6]	T	A	5.240e^-4	0.713	INTRON sky & 1 other
3R	15922486	3R_15922486_SNP [dm3] 3R_20096764_SNP [dm6]	G	C	5.242e^-4	0.713	INTERGENIC
2R	14348790	2R_14348790_SNP [dm3] 2R_18461285_SNP [dm6]	T	C	5.256e^-4	0.713	INTRON CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20908835	2L_20908835_SNP [dm3] 2L_20908835_SNP [dm6]	T	A	5.257e^-4	0.713	INTRON sky & 1 other
3L	10294004	3L_10294004_SNP [dm3] 3L_10300904_SNP [dm6]	G	A	5.268e^-4	0.713	INTERGENIC
2R	9679482	2R_9679482_SNP [dm3] 2R_13791977_SNP [dm6]	C	A	5.269e^-4	0.713	EXON CR43811
X	15285313	X_15285313_INS [dm3] X_15391280_INS [dm6]	C	CATC	5.277e^-4	0.713	INTRON Cngl
2L	4011036	2L_4011036_DEL [dm3] 2L_4011036_DEL [dm6]	CTG	T	5.300e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14559243	2R_14559243_SNP [dm3] 2R_18671738_SNP [dm6]	C	T	5.303e^-4	0.713	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14559246	2R_14559246_SNP [dm3] 2R_18671741_SNP [dm6]	T	G	5.303e^-4	0.713	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14559252	2R_14559252_SNP [dm3] 2R_18671747_SNP [dm6]	T	C	5.303e^-4	0.713	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16683479	2L_16683479_DEL [dm3] 2L_16683479_DEL [dm6]	AAGAATCAAGTTAAATAATA...	TG	5.309e^-4	0.713	DOWNSTREAM CG33552 INTRON grp & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25846278	3R_25846278_SNP [dm3] 3R_30020556_SNP [dm6]	C	T	5.310e^-4	0.713	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
3L	10825419	3L_10825419_SNP [dm3] 3L_10832319_SNP [dm6]	G	T	5.311e^-4	0.713	INTERGENIC
3R	21731114	3R_21731114_SNP [dm3] 3R_25905392_SNP [dm6]	C	T	5.313e^-4	0.713	DOWNSTREAM CR43259 INTRON CR43259
2L	7438444	2L_7438444_SNP [dm3] 2L_7438444_SNP [dm6]	G	A	5.318e^-4	0.713	INTRON CG5973	TF binding site BDTNP1_TFBS_dl
2R	18746038	2R_18746038_SNP [dm3] 2R_22858515_SNP [dm6]	C	A	5.318e^-4	0.713	INTRON inaD
3L	11378343	3L_11378343_SNP [dm3] 3L_11385243_SNP [dm6]	G	T	5.319e^-4	0.713	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11786385	2L_11786385_SNP [dm3] 2L_11786385_SNP [dm6]	C	T	5.323e^-4	0.713	INTERGENIC
2L	11786387	2L_11786387_SNP [dm3] 2L_11786387_SNP [dm6]	G	T	5.323e^-4	0.713	INTERGENIC
2L	13666628	2L_13666628_SNP [dm3] 2L_13666628_SNP [dm6]	C	A	5.323e^-4	0.713	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9991587	2L_9991587_INS [dm3] 2L_9991587_INS [dm6]	C	CCAATGGCCAC...	5.323e^-4	0.713	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16547999	3L_16547999_SNP [dm3] 3L_16554899_SNP [dm6]	T	A	5.324e^-4	0.713	INTERGENIC
2R	19152293	2R_19152293_SNP [dm3] 2R_23264770_SNP [dm6]	C	T	5.327e^-4	0.713	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3L	15897435	3L_15897435_SNP [dm3] 3L_15904335_SNP [dm6]	T	C	5.343e^-4	0.713	SYNONYMOUS_CODING sff
2R	9120332	2R_9120332_DEL [dm3] 2R_13232827_DEL [dm6]	TTA	T	5.364e^-4	0.713	INTRON CG4670	TF binding site BDTNP1_TFBS_sna
3R	22281144	3R_22281144_SNP [dm3] 3R_26455422_SNP [dm6]	C	G	5.396e^-4	0.713	DOWNSTREAM Pdf & 2 others INTERGENIC
2L	1254595	2L_1254595_SNP [dm3] 2L_1254595_SNP [dm6]	A	G	5.411e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16382161	3R_16382161_SNP [dm3] 3R_20556439_SNP [dm6]	C	A	5.420e^-4	0.713	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25326013	3R_25326013_SNP [dm3] 3R_29500291_SNP [dm6]	T	G	5.432e^-4	0.713	INTRON Trc8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	15403304	X_15403304_SNP [dm3] X_15509271_SNP [dm6]	G	T	5.434e^-4	0.713	UPSTREAM mir-12 DOWNSTREAM mir-304 INTRON Gmap	TF binding site mE1_TFBS_cad
2L	1094440	2L_1094440_SNP [dm3] 2L_1094440_SNP [dm6]	C	G	5.440e^-4	0.713	INTRON CG4629
3R	19613429	3R_19613429_SNP [dm3] 3R_23787707_SNP [dm6]	C	A	5.442e^-4	0.713	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2R	5186987	2R_5186987_SNP [dm3] 2R_9299482_SNP [dm6]	A	T	5.451e^-4	0.713	UTR_3_PRIME Drep-2	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12820311	3L_12820311_SNP [dm3] 3L_12827211_SNP [dm6]	C	T	5.458e^-4	0.713	SYNONYMOUS_CODING CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12820368	3L_12820368_SNP [dm3] 3L_12827268_SNP [dm6]	G	A	5.458e^-4	0.713	SYNONYMOUS_CODING CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12820377	3L_12820377_SNP [dm3] 3L_12827277_SNP [dm6]	C	G	5.458e^-4	0.713	SYNONYMOUS_CODING CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5905713	2L_5905713_SNP [dm3] 2L_5905713_SNP [dm6]	A	G	5.459e^-4	0.713	EXON CR43808
3L	10236284	3L_10236284_SNP [dm3] 3L_10243184_SNP [dm6]	A	G	5.460e^-4	0.713	DOWNSTREAM Or67c EXON CR44541
X	4343975	X_4343975_SNP [dm3] X_4449942_SNP [dm6]	T	A	5.466e^-4	0.713	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19278785	3R_19278785_SNP [dm3] 3R_23453063_SNP [dm6]	C	T	5.472e^-4	0.713	INTRON CG4374
2R	14348999	2R_14348999_SNP [dm3] 2R_18461494_SNP [dm6]	T	C	5.480e^-4	0.713	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo
3R	9824070	3R_9824070_SNP [dm3] 3R_13998348_SNP [dm6]	C	T	5.480e^-4	0.713	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2073492	3L_2073492_SNP [dm3] 3L_2073492_SNP [dm6]	T	C	5.481e^-4	0.713	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10884411	2R_10884411_SNP [dm3] 2R_14996906_SNP [dm6]	T	A	5.488e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10884416	2R_10884416_SNP [dm3] 2R_14996911_SNP [dm6]	G	A	5.488e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23940712	3R_23940712_SNP [dm3] 3R_28114990_SNP [dm6]	T	C	5.498e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	9880506	2R_9880506_SNP [dm3] 2R_13993001_SNP [dm6]	A	G	5.500e^-4	0.713	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	27021865	3R_27021865_SNP [dm3] 3R_31196143_SNP [dm6]	G	A	5.501e^-4	0.713	UPSTREAM mesh & 1 other INTERGENIC
2L	18231607	2L_18231607_SNP [dm3] 2L_18231607_SNP [dm6]	T	A	5.506e^-4	0.713	INTRON CG42750
2L	3049072	2L_3049072_SNP [dm3] 2L_3049072_SNP [dm6]	G	A	5.519e^-4	0.713	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3576388	2L_3576388_SNP [dm3] 2L_3576388_SNP [dm6]	T	C	5.522e^-4	0.713	NON_SYNONYMOUS_CODING CG43815 DOWNSTREAM CR43822
2L	10868168	2L_10868168_SNP [dm3] 2L_10868168_SNP [dm6]	T	C	5.531e^-4	0.713	INTERGENIC
2L	1351052	2L_1351052_SNP [dm3] 2L_1351052_SNP [dm6]	C	T	5.539e^-4	0.713	DOWNSTREAM CG5556 INTERGENIC
X	3939582	X_3939582_SNP [dm3] X_4045549_SNP [dm6]	A	G	5.558e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8665700	2L_8665700_SNP [dm3] 2L_8665700_SNP [dm6]	G	A	5.559e^-4	0.713	INTRON Sema-1a
2R	12112249	2R_12112249_SNP [dm3] 2R_16224744_SNP [dm6]	A	T	5.569e^-4	0.713	INTRON CG15706
2L	10379201	2L_10379201_SNP [dm3] 2L_10379201_SNP [dm6]	C	A	5.578e^-4	0.713	UTR_3_PRIME dpr19 UPSTREAM gny
2L	10498759	2L_10498759_SNP [dm3] 2L_10498759_SNP [dm6]	G	A	5.578e^-4	0.713	INTRON Myo31DF
2L	11066067	2L_11066067_SNP [dm3] 2L_11066067_SNP [dm6]	G	T	5.578e^-4	0.713	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11066802	2L_11066802_SNP [dm3] 2L_11066802_SNP [dm6]	G	A	5.578e^-4	0.713	START_GAINED Samuel UTR_5_PRIME Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11128131	2L_11128131_SNP [dm3] 2L_11128131_SNP [dm6]	C	T	5.578e^-4	0.713	SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38	TF binding site mE1_TFBS_inv
2L	11155737	2L_11155737_SNP [dm3] 2L_11155737_SNP [dm6]	C	A	5.578e^-4	0.713	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11155757	2L_11155757_SNP [dm3] 2L_11155757_SNP [dm6]	C	T	5.578e^-4	0.713	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11155762	2L_11155762_SNP [dm3] 2L_11155762_SNP [dm6]	G	C	5.578e^-4	0.713	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11198525	2L_11198525_SNP [dm3] 2L_11198525_SNP [dm6]	T	A	5.578e^-4	0.713	INTRON Ca-beta
2L	11323938	2L_11323938_SNP [dm3] 2L_11323938_SNP [dm6]	G	A	5.578e^-4	0.713	INTERGENIC
2L	14104013	2L_14104013_SNP [dm3] 2L_14104013_SNP [dm6]	C	T	5.578e^-4	0.713	UPSTREAM CG16879 INTERGENIC
2L	14456100	2L_14456100_SNP [dm3] 2L_14456100_SNP [dm6]	T	C	5.578e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	14457767	2L_14457767_SNP [dm3] 2L_14457767_SNP [dm6]	C	A	5.578e^-4	0.713	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15647678	2L_15647678_SNP [dm3] 2L_15647678_SNP [dm6]	G	A	5.578e^-4	0.713	UTR_3_PRIME CG4587
2L	15647705	2L_15647705_SNP [dm3] 2L_15647705_SNP [dm6]	C	G	5.578e^-4	0.713	UTR_3_PRIME CG4587
2L	2685309	2L_2685309_SNP [dm3] 2L_2685309_SNP [dm6]	C	G	5.578e^-4	0.713	INTRON CG31690
2L	3083389	2L_3083389_SNP [dm3] 2L_3083389_SNP [dm6]	C	A	5.578e^-4	0.713	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.190e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.09203

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	3.1384	0.0765

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1790 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13360523	3R_13360523_INS [dm3] 3R_17534801_INS [dm6]	G	GGTAAATTAAG...	1.400e^-6	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	22712101	3R_22712101_SNP [dm3] 3R_26886379_SNP [dm6]	T	G	1.723e^-6	0.942	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4816839	3L_4816839_SNP [dm3] 3L_4816839_SNP [dm6]	G	A	3.016e^-6	0.942	INTRON Dhc64C
3R	3861686	3R_3861686_SNP [dm3] 3R_8035964_SNP [dm6]	T	C	5.385e^-6	0.942	SYNONYMOUS_CODING unc-45
3R	3862288	3R_3862288_SNP [dm3] 3R_8036566_SNP [dm6]	A	T	5.385e^-6	0.942	UTR_3_PRIME unc-45
3R	11066620	3R_11066620_SNP [dm3] 3R_15240898_SNP [dm6]	A	G	5.707e^-6	0.942	SYNONYMOUS_CODING tefu
3R	24384413	3R_24384413_SNP [dm3] 3R_28558691_SNP [dm6]	G	T	5.760e^-6	0.942	INTERGENIC
3R	24384414	3R_24384414_SNP [dm3] 3R_28558692_SNP [dm6]	C	T	5.760e^-6	0.942	INTERGENIC
3L	4816895	3L_4816895_SNP [dm3] 3L_4816895_SNP [dm6]	G	A	6.075e^-6	0.942	INTRON Dhc64C
3R	13360465	3R_13360465_SNP [dm3] 3R_17534743_SNP [dm6]	T	A	6.528e^-6	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	4437687	3L_4437687_SNP [dm3] 3L_4437687_SNP [dm6]	A	T	6.667e^-6	0.942	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	14097292	3L_14097292_SNP [dm3] 3L_14104192_SNP [dm6]	T	C	1.114e^-5	0.942	UTR_3_PRIME Sox21a	TF binding site mE1_TFBS_cad
3L	4816877	3L_4816877_SNP [dm3] 3L_4816877_SNP [dm6]	G	T	1.207e^-5	0.942	INTRON Dhc64C
3L	4816882	3L_4816882_SNP [dm3] 3L_4816882_SNP [dm6]	T	C	1.207e^-5	0.942	INTRON Dhc64C
3R	24384144	3R_24384144_SNP [dm3] 3R_28558422_SNP [dm6]	A	G	1.230e^-5	0.942	INTERGENIC
2L	9638967	2L_9638967_SNP [dm3] 2L_9638967_SNP [dm6]	C	T	1.237e^-5	0.942	INTRON Apoltp
3R	19926037	3R_19926037_SNP [dm3] 3R_24100315_SNP [dm6]	C	A	1.247e^-5	0.942	INTRON 4EHP
X	4850465	X_4850465_SNP [dm3] X_4956432_SNP [dm6]	G	T	1.343e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	1.504e^-5	0.942	INTRON CG40470
3R	13360951	3R_13360951_SNP [dm3] 3R_17535229_SNP [dm6]	A	C	1.585e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	4816896	3L_4816896_SNP [dm3] 3L_4816896_SNP [dm6]	T	C	1.601e^-5	0.942	INTRON Dhc64C
X	16785092	X_16785092_SNP [dm3] X_16891059_SNP [dm6]	C	T	1.670e^-5	0.942	DOWNSTREAM CG13002 INTERGENIC
2R	12033683	2R_12033683_SNP [dm3] 2R_16146178_SNP [dm6]	A	C	1.771e^-5	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3L	4816840	3L_4816840_SNP [dm3] 3L_4816840_SNP [dm6]	G	A	1.771e^-5	0.942	INTRON Dhc64C
3R	23161817	3R_23161817_SNP [dm3] 3R_27336095_SNP [dm6]	T	C	1.915e^-5	0.942	INTERGENIC
3R	19828734	3R_19828734_SNP [dm3] 3R_24003012_SNP [dm6]	A	G	2.209e^-5	0.942	INTRON KrT95D
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	2.242e^-5	0.942	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11814577	3L_11814577_SNP [dm3] 3L_11821477_SNP [dm6]	A	T	2.341e^-5	0.942	UTR_5_PRIME CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13360932	3R_13360932_SNP [dm3] 3R_17535210_SNP [dm6]	C	T	2.360e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	19458716	3R_19458716_SNP [dm3] 3R_23632994_SNP [dm6]	C	A	2.542e^-5	0.942	INTRON CG31145
3R	2816251	3R_2816251_SNP [dm3] 3R_6990529_SNP [dm6]	T	C	2.547e^-5	0.942	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11434734	3R_11434734_SNP [dm3] 3R_15609012_SNP [dm6]	G	T	2.559e^-5	0.942	INTERGENIC
3R	24384324	3R_24384324_INS [dm3] 3R_28558602_INS [dm6]	T	TCT	2.775e^-5	0.942	INTERGENIC
3R	12580990	3R_12580990_SNP [dm3] 3R_16755268_SNP [dm6]	G	C	2.856e^-5	0.942	INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	4850462	X_4850462_SNP [dm3] X_4956429_SNP [dm6]	T	C	2.925e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3R	14910632	3R_14910632_SNP [dm3] 3R_19084910_SNP [dm6]	G	A	3.113e^-5	0.942	INTRON cdi
2L	15616826	2L_15616826_INS [dm3] 2L_15616826_INS [dm6]	A	AG	3.225e^-5	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
3R	5123637	3R_5123637_SNP [dm3] 3R_9297915_SNP [dm6]	G	A	3.384e^-5	0.942	INTRON CG8861
2R	12024607	2R_12024607_SNP [dm3] 2R_16137102_SNP [dm6]	T	C	3.466e^-5	0.942	INTRON spin
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	3.571e^-5	0.942	INTERGENIC
3R	13360397	3R_13360397_SNP [dm3] 3R_17534675_SNP [dm6]	G	A	3.676e^-5	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	15794882	3R_15794882_SNP [dm3] 3R_19969160_SNP [dm6]	T	C	3.679e^-5	0.942	INTRON Hs6st
2L	4201844	2L_4201844_SNP [dm3] 2L_4201844_SNP [dm6]	A	G	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201848	2L_4201848_SNP [dm3] 2L_4201848_SNP [dm6]	C	A	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201850	2L_4201850_SNP [dm3] 2L_4201850_SNP [dm6]	A	T	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201851	2L_4201851_SNP [dm3] 2L_4201851_SNP [dm6]	T	G	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201853	2L_4201853_SNP [dm3] 2L_4201853_SNP [dm6]	A	T	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201858	2L_4201858_SNP [dm3] 2L_4201858_SNP [dm6]	G	A	3.726e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201859	2L_4201859_SNP [dm3] 2L_4201859_SNP [dm6]	A	G	3.726e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
3R	20424905	3R_20424905_SNP [dm3] 3R_24599183_SNP [dm6]	T	G	3.906e^-5	0.942	INTRON mld
X	16785091	X_16785091_SNP [dm3] X_16891058_SNP [dm6]	C	T	3.945e^-5	0.942	DOWNSTREAM CG13002 INTERGENIC
3L	513402	3L_513402_SNP [dm3] 3L_513402_SNP [dm6]	G	T	4.007e^-5	0.942	INTRON klar
3L	6983314	3L_6983314_SNP [dm3] 3L_6990214_SNP [dm6]	T	A	4.031e^-5	0.942	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11819478	3R_11819478_SNP [dm3] 3R_15993756_SNP [dm6]	C	T	4.120e^-5	0.942	UPSTREAM srp DOWNSTREAM CR44133 INTRON srp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15794958	3R_15794958_INS [dm3] 3R_19969236_INS [dm6]	T	TCGTTTAAGTT...	4.221e^-5	0.942	INTRON Hs6st
3L	12405643	3L_12405643_SNP [dm3] 3L_12412543_SNP [dm6]	T	A	4.481e^-5	0.942	INTRON CG32103
3L	9578066	3L_9578066_SNP [dm3] 3L_9584966_SNP [dm6]	T	A	4.508e^-5	0.942	INTRON CG42673
3R	6367514	3R_6367514_DEL [dm3] 3R_10541792_DEL [dm6]	TTCCA	T	4.572e^-5	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	3801043	3L_3801043_SNP [dm3] 3L_3801043_SNP [dm6]	T	G	4.574e^-5	0.942	UTR_5_PRIME CG32264 INTRON CG32264
2R	14332166	2R_14332166_SNP [dm3] 2R_18444661_SNP [dm6]	G	C	4.831e^-5	0.942	SYNONYMOUS_CODING slim
2R	17721491	2R_17721491_DEL [dm3] 2R_21833986_DEL [dm6]	CTTAT	C	4.965e^-5	0.942	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3R	14629014	3R_14629014_SNP [dm3] 3R_18803292_SNP [dm6]	T	A	4.973e^-5	0.942	UTR_3_PRIME CG18208
2L	6325352	2L_6325352_SNP [dm3] 2L_6325352_SNP [dm6]	A	C	5.001e^-5	0.942	SPLICE_SITE_REGION PDZ-GEF INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23928986	3R_23928986_SNP [dm3] 3R_28103264_SNP [dm6]	T	G	5.036e^-5	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3727474	3L_3727474_SNP [dm3] 3L_3727474_SNP [dm6]	T	A	5.098e^-5	0.942	INTRON CG32264
2L	4201855	2L_4201855_SNP [dm3] 2L_4201855_SNP [dm6]	T	G	5.132e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
3R	10039792	3R_10039792_SNP [dm3] 3R_14214070_SNP [dm6]	G	A	5.200e^-5	0.942	SYNONYMOUS_CODING Dop1R1
3R	5123656	3R_5123656_SNP [dm3] 3R_9297934_SNP [dm6]	A	G	5.234e^-5	0.942	INTRON CG8861
3R	11375463	3R_11375463_SNP [dm3] 3R_15549741_SNP [dm6]	C	G	5.288e^-5	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11375607	3R_11375607_SNP [dm3] 3R_15549885_SNP [dm6]	G	A	5.288e^-5	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
3L	18131081	3L_18131081_SNP [dm3] 3L_18137981_SNP [dm6]	C	T	5.323e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14336479	3L_14336479_SNP [dm3] 3L_14343379_SNP [dm6]	T	C	5.502e^-5	0.942	INTRON fz
3L	23647677	3L_23647677_SNP [dm3] 3L_23654577_SNP [dm6]	G	T	5.506e^-5	0.942	INTRON AGO3	transposable element FlyBase
3L	23672790	3L_23672790_SNP [dm3] 3L_23679690_SNP [dm6]	G	A	5.506e^-5	0.942	INTRON AGO3
3L	2106064	3L_2106064_SNP [dm3] 3L_2106064_SNP [dm6]	G	A	5.506e^-5	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11819375	3R_11819375_SNP [dm3] 3R_15993653_SNP [dm6]	G	A	5.754e^-5	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8563239	2R_8563239_SNP [dm3] 2R_12675734_SNP [dm6]	C	T	5.772e^-5	0.942	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3R	7764012	3R_7764012_SNP [dm3] 3R_11938290_SNP [dm6]	C	T	5.807e^-5	0.942	INTRON Cad87A
3R	11105933	3R_11105933_DEL [dm3] 3R_15280211_DEL [dm6]	TTTGTTGGCGATAAG...	T	6.082e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14192256	3L_14192256_SNP [dm3] 3L_14199156_SNP [dm6]	A	G	6.184e^-5	0.942	INTRON nuf
3L	11812051	3L_11812051_SNP [dm3] 3L_11818951_SNP [dm6]	C	T	6.185e^-5	0.942	INTRON CG5946
X	10804773	X_10804773_SNP [dm3] X_10910740_SNP [dm6]	G	C	6.193e^-5	0.942	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14092171	3R_14092171_SNP [dm3] 3R_18266449_SNP [dm6]	C	A	6.241e^-5	0.942	INTERGENIC
3L	11812446	3L_11812446_SNP [dm3] 3L_11819346_SNP [dm6]	G	A	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812457	3L_11812457_INS [dm3] 3L_11819357_INS [dm6]	TG	GAAT	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812474	3L_11812474_SNP [dm3] 3L_11819374_SNP [dm6]	A	G	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9261758	3L_9261758_INS [dm3] 3L_9268658_INS [dm6]	T	TT	6.324e^-5	0.942	INTRON GluRIB
3L	12374615	3L_12374615_SNP [dm3] 3L_12381515_SNP [dm6]	A	G	6.411e^-5	0.942	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	6.574e^-5	0.942	INTRON CG31191
3R	11471581	3R_11471581_SNP [dm3] 3R_15645859_SNP [dm6]	A	G	6.615e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11425306	3R_11425306_SNP [dm3] 3R_15599584_SNP [dm6]	G	C	6.709e^-5	0.942	INTERGENIC
3L	5422470	3L_5422470_SNP [dm3] 3L_5429370_SNP [dm6]	G	A	7.026e^-5	0.942	UTR_5_PRIME CG34391
2L	19392684	2L_19392684_SNP [dm3] 2L_19392684_SNP [dm6]	G	A	7.043e^-5	0.942	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	7.101e^-5	0.942	INTERGENIC
3R	11434604	3R_11434604_SNP [dm3] 3R_15608882_SNP [dm6]	C	A	7.270e^-5	0.942	INTERGENIC
3R	11434625	3R_11434625_SNP [dm3] 3R_15608903_SNP [dm6]	T	C	7.270e^-5	0.942	INTERGENIC
3R	11434671	3R_11434671_SNP [dm3] 3R_15608949_SNP [dm6]	G	A	7.270e^-5	0.942	INTERGENIC
3R	17842848	3R_17842848_SNP [dm3] 3R_22017126_SNP [dm6]	G	A	7.499e^-5	0.942	SYNONYMOUS_CODING CG6439 DOWNSTREAM CG6332	TF binding site mE1_TFBS_sens
3L	6391821	3L_6391821_SNP [dm3] 3L_6398721_SNP [dm6]	A	G	7.508e^-5	0.942	INTERGENIC
3R	11425983	3R_11425983_SNP [dm3] 3R_15600261_SNP [dm6]	T	C	7.716e^-5	0.942	INTERGENIC
2L	9586156	2L_9586156_SNP [dm3] 2L_9586156_SNP [dm6]	T	A	7.792e^-5	0.942	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	23649566	3L_23649566_SNP [dm3] 3L_23656466_SNP [dm6]	A	G	7.872e^-5	0.942	INTRON AGO3	transposable element FlyBase
3R	9659767	3R_9659767_SNP [dm3] 3R_13834045_SNP [dm6]	A	G	8.015e^-5	0.942	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	25733501	3R_25733501_SNP [dm3] 3R_29907779_SNP [dm6]	T	C	8.178e^-5	0.942	UPSTREAM CG31036 INTERGENIC
3R	9853016	3R_9853016_SNP [dm3] 3R_14027294_SNP [dm6]	C	T	8.283e^-5	0.942	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10039871	3R_10039871_SNP [dm3] 3R_14214149_SNP [dm6]	A	G	8.296e^-5	0.942	SYNONYMOUS_CODING Dop1R1
X	12508622	X_12508622_SNP [dm3] X_12614589_SNP [dm6]	C	A	8.302e^-5	0.942	NON_SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621	TF binding site mE1_TFBS_sens
3R	19828735	3R_19828735_SNP [dm3] 3R_24003013_SNP [dm6]	C	A	8.348e^-5	0.942	INTRON KrT95D
3R	11400817	3R_11400817_SNP [dm3] 3R_15575095_SNP [dm6]	C	T	8.412e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11409169	3R_11409169_SNP [dm3] 3R_15583447_SNP [dm6]	C	T	8.431e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15770916	3L_15770916_SNP [dm3] 3L_15777816_SNP [dm6]	C	T	8.574e^-5	0.942	INTERGENIC
3L	11812453	3L_11812453_SNP [dm3] 3L_11819353_SNP [dm6]	G	T	8.731e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5735774	3L_5735774_SNP [dm3] 3L_5742674_SNP [dm6]	G	T	8.732e^-5	0.942	UTR_3_PRIME sif INTRON sif
3R	14036224	3R_14036224_INS [dm3] 3R_18210502_INS [dm6]	C	CACACACCCACAGACATCAC...	8.778e^-5	0.942	INTRON CG7985
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	8.788e^-5	0.942	INTRON CG31191
3R	17595564	3R_17595564_SNP [dm3] 3R_21769842_SNP [dm6]	C	T	8.821e^-5	0.942	SYNONYMOUS_CODING Burs DOWNSTREAM CG42335 & 1 other
3R	11425146	3R_11425146_SNP [dm3] 3R_15599424_SNP [dm6]	A	T	8.932e^-5	0.942	INTERGENIC
3R	11405546	3R_11405546_SNP [dm3] 3R_15579824_SNP [dm6]	C	T	8.973e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14323864	3R_14323864_SNP [dm3] 3R_18498142_SNP [dm6]	G	T	9.019e^-5	0.942	INTRON fru
3R	19572509	3R_19572509_DEL [dm3] 3R_23746787_DEL [dm6]	GAGCCTG	G	9.194e^-5	0.942	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12460670	2L_12460670_SNP [dm3] 2L_12460670_SNP [dm6]	C	T	9.449e^-5	0.942	SYNONYMOUS_CODING bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4815842	3L_4815842_SNP [dm3] 3L_4815842_SNP [dm6]	C	T	9.488e^-5	0.942	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4816832	3L_4816832_SNP [dm3] 3L_4816832_SNP [dm6]	G	T	9.488e^-5	0.942	INTRON Dhc64C
2L	11581430	2L_11581430_SNP [dm3] 2L_11581430_SNP [dm6]	G	T	9.553e^-5	0.942	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11375619	3R_11375619_SNP [dm3] 3R_15549897_SNP [dm6]	G	A	9.562e^-5	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
2R	12254509	2R_12254509_SNP [dm3] 2R_16367004_SNP [dm6]	G	T	9.621e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23932600	3R_23932600_SNP [dm3] 3R_28106878_SNP [dm6]	A	C	9.719e^-5	0.942	INTERGENIC
2R	14599383	2R_14599383_SNP [dm3] 2R_18711878_SNP [dm6]	T	A	9.756e^-5	0.942	EXON pncr016:2R
3L	11814681	3L_11814681_SNP [dm3] 3L_11821581_SNP [dm6]	T	G	9.850e^-5	0.942	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11833682	3L_11833682_SNP [dm3] 3L_11840582_SNP [dm6]	C	T	9.857e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23114280	3R_23114280_SNP [dm3] 3R_27288558_SNP [dm6]	T	A	9.910e^-5	0.942	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	10025660	3L_10025660_SNP [dm3] 3L_10032560_SNP [dm6]	T	A	9.923e^-5	0.942	INTRON dpr6
3R	3908653	3R_3908653_SNP [dm3] 3R_8082931_SNP [dm6]	C	T	9.948e^-5	0.942	SYNONYMOUS_CODING mAChR-B
3R	3883261	3R_3883261_SNP [dm3] 3R_8057539_SNP [dm6]	C	T	9.961e^-5	0.942	INTERGENIC
2R	14599379	2R_14599379_SNP [dm3] 2R_18711874_SNP [dm6]	A	G	9.971e^-5	0.942	EXON pncr016:2R
2R	14599390	2R_14599390_SNP [dm3] 2R_18711885_SNP [dm6]	A	T	9.971e^-5	0.942	EXON pncr016:2R
2R	14599392	2R_14599392_SNP [dm3] 2R_18711887_SNP [dm6]	C	T	9.971e^-5	0.942	EXON pncr016:2R
2R	14599400	2R_14599400_SNP [dm3] 2R_18711895_SNP [dm6]	C	T	9.971e^-5	0.942	EXON pncr016:2R
2R	14599409	2R_14599409_SNP [dm3] 2R_18711904_SNP [dm6]	T	C	9.971e^-5	0.942	EXON pncr016:2R
3L	12315454	3L_12315454_SNP [dm3] 3L_12322354_SNP [dm6]	A	C	1.009e^-4	0.942	INTERGENIC
2L	554745	2L_554745_SNP [dm3] 2L_554745_SNP [dm6]	A	G	1.011e^-4	0.942	SYNONYMOUS_CODING rempA
X	16785736	X_16785736_SNP [dm3] X_16891703_SNP [dm6]	G	T	1.041e^-4	0.942	INTERGENIC
3R	25840071	3R_25840071_SNP [dm3] 3R_30014349_SNP [dm6]	A	G	1.067e^-4	0.942	INTRON CG7920
3R	20272267	3R_20272267_SNP [dm3] 3R_24446545_SNP [dm6]	G	C	1.083e^-4	0.942	INTRON nAChRalpha1
2L	2991876	2L_2991876_SNP [dm3] 2L_2991876_SNP [dm6]	C	T	1.089e^-4	0.942	SYNONYMOUS_CODING okr UPSTREAM CG3558	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2991957	2L_2991957_SNP [dm3] 2L_2991957_SNP [dm6]	A	G	1.089e^-4	0.942	SYNONYMOUS_CODING okr UPSTREAM CG3558	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16763317	3R_16763317_SNP [dm3] 3R_20937595_SNP [dm6]	G	A	1.091e^-4	0.942	INTRON CG31191
3L	11812477	3L_11812477_SNP [dm3] 3L_11819377_SNP [dm6]	T	A	1.097e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16302031	2R_16302031_SNP [dm3] 2R_20414526_SNP [dm6]	A	C	1.107e^-4	0.942	INTERGENIC
X	21047450	X_21047450_INS [dm3] X_21176423_INS [dm6]	A	AATC	1.117e^-4	0.942	INTERGENIC
3R	13758053	3R_13758053_SNP [dm3] 3R_17932331_SNP [dm6]	C	T	1.121e^-4	0.942	UTR_5_PRIME cpo INTRON cpo
2L	10708938	2L_10708938_SNP [dm3] 2L_10708938_SNP [dm6]	G	A	1.133e^-4	0.942	UTR_5_PRIME Lip2
3L	521428	3L_521428_SNP [dm3] 3L_521428_SNP [dm6]	G	T	1.141e^-4	0.942	INTRON klar
X	14563426	X_14563426_INS [dm3] X_14669393_INS [dm6]	A	ACTAGTA	1.156e^-4	0.942	INTERGENIC
X	14563452	X_14563452_SNP [dm3] X_14669419_SNP [dm6]	C	G	1.156e^-4	0.942	INTERGENIC
X	14563485	X_14563485_SNP [dm3] X_14669452_SNP [dm6]	A	T	1.156e^-4	0.942	INTERGENIC
X	14563495	X_14563495_SNP [dm3] X_14669462_SNP [dm6]	A	T	1.156e^-4	0.942	INTERGENIC
X	14563521	X_14563521_DEL [dm3] X_14669488_DEL [dm6]	TAATATGATAT...	T	1.156e^-4	0.942	INTERGENIC
X	14563553	X_14563553_SNP [dm3] X_14669520_SNP [dm6]	G	A	1.156e^-4	0.942	INTERGENIC
3R	9642899	3R_9642899_SNP [dm3] 3R_13817177_SNP [dm6]	A	G	1.158e^-4	0.942	DOWNSTREAM CR43642 INTERGENIC
3L	22653158	3L_22653158_SNP [dm3] 3L_22660058_SNP [dm6]	C	T	1.167e^-4	0.942	INTERGENIC
2R	12408865	2R_12408865_SNP [dm3] 2R_16521360_SNP [dm6]	G	A	1.185e^-4	0.942	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5004829	X_5004829_SNP [dm3] X_5110796_SNP [dm6]	T	C	1.190e^-4	0.942	INTRON rg & 1 other
3L	6983256	3L_6983256_SNP [dm3] 3L_6990156_SNP [dm6]	G	A	1.191e^-4	0.942	UPSTREAM bin INTERGENIC
X	12511263	X_12511263_SNP [dm3] X_12617230_SNP [dm6]	G	A	1.191e^-4	0.942	INTRON CG11085	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9673294	3R_9673294_SNP [dm3] 3R_13847572_SNP [dm6]	T	A	1.195e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10444659	2L_10444659_DEL [dm3] 2L_10444659_DEL [dm6]	CTGTGGTC	C	1.196e^-4	0.942	INTRON loh
3R	11402937	3R_11402937_SNP [dm3] 3R_15577215_SNP [dm6]	T	C	1.204e^-4	0.942	INTERGENIC
2R	16702917	2R_16702917_SNP [dm3] 2R_20815412_SNP [dm6]	T	C	1.212e^-4	0.942	INTERGENIC
2R	16702942	2R_16702942_SNP [dm3] 2R_20815437_SNP [dm6]	C	A	1.212e^-4	0.942	INTERGENIC
3R	22397512	3R_22397512_DEL [dm3] 3R_26571790_DEL [dm6]	GATGGCGTTACTTCGTTCG...	G	1.221e^-4	0.942	INTRON scrib
3L	23649585	3L_23649585_SNP [dm3] 3L_23656485_SNP [dm6]	C	T	1.222e^-4	0.942	INTRON AGO3	transposable element FlyBase
2L	10724036	2L_10724036_SNP [dm3] 2L_10724036_SNP [dm6]	A	G	1.233e^-4	0.942	UPSTREAM CG6431 INTERGENIC
3R	14780882	3R_14780882_SNP [dm3] 3R_18955160_SNP [dm6]	C	A	1.235e^-4	0.942	INTRON CG42613 & 1 other
3R	25372305	3R_25372305_SNP [dm3] 3R_29546583_SNP [dm6]	A	T	1.237e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25372307	3R_25372307_SNP [dm3] 3R_29546585_SNP [dm6]	G	T	1.244e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4932248	3L_4932248_SNP [dm3] 3L_4932248_SNP [dm6]	G	C	1.244e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
2R	14598468	2R_14598468_SNP [dm3] 2R_18710963_SNP [dm6]	C	T	1.248e^-4	0.942	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11686070	2R_11686070_DEL [dm3] 2R_15798565_DEL [dm6]	GA	G	1.248e^-4	0.942	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11812503	3L_11812503_SNP [dm3] 3L_11819403_SNP [dm6]	G	A	1.249e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812414	3L_11812414_SNP [dm3] 3L_11819314_SNP [dm6]	G	A	1.254e^-4	0.942	INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13361101	3R_13361101_SNP [dm3] 3R_17535379_SNP [dm6]	A	G	1.269e^-4	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1282733	2L_1282733_SNP [dm3] 2L_1282733_SNP [dm6]	A	T	1.299e^-4	0.942	INTRON robo3
2R	12254634	2R_12254634_SNP [dm3] 2R_16367129_SNP [dm6]	T	A	1.323e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7651320	2R_7651320_SNP [dm3] 2R_11763815_SNP [dm6]	A	G	1.325e^-4	0.942	INTRON ths
2R	20353943	2R_20353943_SNP [dm3] 2R_24466420_SNP [dm6]	G	A	1.340e^-4	0.942	INTRON CG13579
X	20968068	X_20968068_SNP [dm3] X_21097041_SNP [dm6]	C	T	1.348e^-4	0.942	INTRON stg1 & 2 others
3R	2531949	3R_2531949_SNP [dm3] 3R_6706227_SNP [dm6]	A	T	1.358e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19084891	3R_19084891_SNP [dm3] 3R_23259169_SNP [dm6]	A	G	1.375e^-4	0.942	INTRON CG13827	TF binding site BDTNP1_TFBS_da
2R	18950938	2R_18950938_SNP [dm3] 2R_23063415_SNP [dm6]	G	C	1.397e^-4	0.942	SYNONYMOUS_CODING CG9890 UPSTREAM l_2_06496	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15616817	2L_15616817_SNP [dm3] 2L_15616817_SNP [dm6]	A	G	1.398e^-4	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
2L	19363090	2L_19363090_SNP [dm3] 2L_19363090_SNP [dm6]	C	T	1.401e^-4	0.942	UTR_5_PRIME dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11411952	3R_11411952_SNP [dm3] 3R_15586230_SNP [dm6]	C	T	1.434e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11424928	3R_11424928_SNP [dm3] 3R_15599206_SNP [dm6]	A	C	1.438e^-4	0.942	INTERGENIC
2R	6955573	2R_6955573_SNP [dm3] 2R_11068068_SNP [dm6]	T	C	1.441e^-4	0.942	INTRON luna
3L	11814597	3L_11814597_SNP [dm3] 3L_11821497_SNP [dm6]	T	C	1.467e^-4	0.942	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	14563438	X_14563438_SNP [dm3] X_14669405_SNP [dm6]	T	A	1.478e^-4	0.942	INTERGENIC
X	14563439	X_14563439_SNP [dm3] X_14669406_SNP [dm6]	A	G	1.478e^-4	0.942	INTERGENIC
2L	6325388	2L_6325388_SNP [dm3] 2L_6325388_SNP [dm6]	T	C	1.480e^-4	0.942	NON_SYNONYMOUS_CODING PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14598183	2R_14598183_SNP [dm3] 2R_18710678_SNP [dm6]	T	C	1.481e^-4	0.942	UPSTREAM pncr016:2R INTRON CG15087	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18145995	3L_18145995_SNP [dm3] 3L_18152895_SNP [dm6]	G	T	1.486e^-4	0.942	INTRON CG7330
X	12642800	X_12642800_SNP [dm3] X_12748767_SNP [dm6]	C	T	1.487e^-4	0.942	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3L	3883218	3L_3883218_SNP [dm3] 3L_3883218_SNP [dm6]	C	T	1.491e^-4	0.942	INTERGENIC
2R	17912896	2R_17912896_SNP [dm3] 2R_22025391_SNP [dm6]	C	T	1.492e^-4	0.942	INTRON CG34370
2R	17912936	2R_17912936_SNP [dm3] 2R_22025431_SNP [dm6]	A	G	1.492e^-4	0.942	INTRON CG34370
2R	17912937	2R_17912937_SNP [dm3] 2R_22025432_SNP [dm6]	G	T	1.492e^-4	0.942	INTRON CG34370
2R	14599398	2R_14599398_SNP [dm3] 2R_18711893_SNP [dm6]	A	T	1.499e^-4	0.942	EXON pncr016:2R
3R	13360975	3R_13360975_SNP [dm3] 3R_17535253_SNP [dm6]	C	A	1.506e^-4	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	22317325	3L_22317325_SNP [dm3] 3L_22324225_SNP [dm6]	C	T	1.513e^-4	0.942	INTRON Ten-m
3L	2904588	3L_2904588_SNP [dm3] 3L_2904588_SNP [dm6]	C	G	1.513e^-4	0.942	INTRON Shab
X	14563466	X_14563466_SNP [dm3] X_14669433_SNP [dm6]	C	A	1.520e^-4	0.942	INTERGENIC
3R	11402935	3R_11402935_SNP [dm3] 3R_15577213_SNP [dm6]	G	A	1.524e^-4	0.942	INTERGENIC
3R	11077272	3R_11077272_DEL [dm3] 3R_15251550_DEL [dm6]	GGACAAACA	G	1.536e^-4	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11077282	3R_11077282_SNP [dm3] 3R_15251560_SNP [dm6]	T	C	1.536e^-4	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12570194	2L_12570194_SNP [dm3] 2L_12570194_SNP [dm6]	T	A	1.546e^-4	0.942	DOWNSTREAM CR44598 & 1 other INTERGENIC
2L	1499642	2L_1499642_SNP [dm3] 2L_1499642_SNP [dm6]	G	A	1.550e^-4	0.942	SYNONYMOUS_CODING CG18131 INTRON CG18131
X	12508620	X_12508620_SNP [dm3] X_12614587_SNP [dm6]	G	A	1.559e^-4	0.942	SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621	TF binding site mE1_TFBS_sens
3R	13970135	3R_13970135_INS [dm3] 3R_18144413_INS [dm6]	T	TT	1.571e^-4	0.942	INTERGENIC
3R	22363808	3R_22363808_SNP [dm3] 3R_26538086_SNP [dm6]	T	G	1.571e^-4	0.942	INTRON scrib
3R	20378406	3R_20378406_SNP [dm3] 3R_24552684_SNP [dm6]	G	A	1.577e^-4	0.942	INTRON Esyt2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11423065	3R_11423065_SNP [dm3] 3R_15597343_SNP [dm6]	A	G	1.590e^-4	0.942	INTERGENIC
X	10029205	X_10029205_SNP [dm3] X_10135172_SNP [dm6]	A	C	1.593e^-4	0.942	INTRON CR44894 & 1 other
2R	17294335	2R_17294335_SNP [dm3] 2R_21406830_SNP [dm6]	T	C	1.616e^-4	0.942	INTRON Sdc
3R	11378526	3R_11378526_SNP [dm3] 3R_15552804_SNP [dm6]	A	G	1.618e^-4	0.942	UTR_5_PRIME CG18516	TF binding site mE1_TFBS_cad
2R	10862770	2R_10862770_SNP [dm3] 2R_14975265_SNP [dm6]	C	T	1.623e^-4	0.942	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23906778	3L_23906778_SNP [dm3] 3L_23913678_SNP [dm6]	C	G	1.625e^-4	0.942	INTRON CG40470
2L	11581366	2L_11581366_DEL [dm3] 2L_11581366_DEL [dm6]	ATAGAACGGAA...	A	1.627e^-4	0.942	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18903406	2L_18903406_SNP [dm3] 2L_18903406_SNP [dm6]	C	T	1.627e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	12908247	3L_12908247_SNP [dm3] 3L_12915147_SNP [dm6]	C	G	1.638e^-4	0.942	INTERGENIC
3R	6367541	3R_6367541_SNP [dm3] 3R_10541819_SNP [dm6]	T	C	1.647e^-4	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	3468966	3R_3468966_SNP [dm3] 3R_7643244_SNP [dm6]	G	A	1.649e^-4	0.942	INTERGENIC	transposable element FlyBase
3L	5483985	3L_5483985_SNP [dm3] 3L_5490885_SNP [dm6]	T	A	1.659e^-4	0.942	INTERGENIC
3R	5200079	3R_5200079_SNP [dm3] 3R_9374357_SNP [dm6]	T	C	1.660e^-4	0.942	INTRON FER
2L	579640	2L_579640_SNP [dm3] 2L_579640_SNP [dm6]	C	T	1.665e^-4	0.942	DOWNSTREAM Pph13 INTERGENIC
3R	18108040	3R_18108040_SNP [dm3] 3R_22282318_SNP [dm6]	A	G	1.676e^-4	0.942	INTRON SKIP
2L	18504976	2L_18504976_INS [dm3] 2L_18504976_INS [dm6]	G	GA	1.684e^-4	0.942	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	966070	2L_966070_DEL [dm3] 2L_966070_DEL [dm6]	AGTTATTTA	A	1.685e^-4	0.942	INTERGENIC
2R	15569024	2R_15569024_SNP [dm3] 2R_19681519_SNP [dm6]	A	C	1.686e^-4	0.942	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	1.712e^-4	0.942	INTRON AGO3	transposable element FlyBase
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	1.719e^-4	0.942	SYNONYMOUS_CODING aly
3R	7764587	3R_7764587_SNP [dm3] 3R_11938865_SNP [dm6]	T	C	1.721e^-4	0.942	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2R	11569327	2R_11569327_SNP [dm3] 2R_15681822_SNP [dm6]	A	G	1.751e^-4	0.942	NON_SYNONYMOUS_CODING CG30091 UPSTREAM Ranbp11 DOWNSTREAM CR43429	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17670937	3R_17670937_SNP [dm3] 3R_21845215_SNP [dm6]	G	T	1.753e^-4	0.942	SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
3R	23935635	3R_23935635_SNP [dm3] 3R_28109913_SNP [dm6]	T	G	1.755e^-4	0.942	INTERGENIC
3R	23935639	3R_23935639_SNP [dm3] 3R_28109917_SNP [dm6]	G	T	1.755e^-4	0.942	INTERGENIC
3R	23935642	3R_23935642_SNP [dm3] 3R_28109920_SNP [dm6]	T	C	1.755e^-4	0.942	INTERGENIC
2R	19496632	2R_19496632_SNP [dm3] 2R_23609109_SNP [dm6]	C	A	1.765e^-4	0.942	UPSTREAM CG4019 INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2689044	2R_2689044_SNP [dm3] 2R_6801539_SNP [dm6]	C	T	1.766e^-4	0.942	INTERGENIC
2R	17912845	2R_17912845_SNP [dm3] 2R_22025340_SNP [dm6]	T	C	1.770e^-4	0.942	INTRON CG34370
3R	23161708	3R_23161708_DEL [dm3] 3R_27335986_DEL [dm6]	GCTTTGGCCACGCCTCGAGC...	G	1.785e^-4	0.942	INTERGENIC
3R	21895164	3R_21895164_SNP [dm3] 3R_26069442_SNP [dm6]	T	A	1.790e^-4	0.942	DOWNSTREAM CR44950 INTERGENIC
3R	23926840	3R_23926840_SNP [dm3] 3R_28101118_SNP [dm6]	T	C	1.819e^-4	0.942	INTERGENIC
3L	18022447	3L_18022447_SNP [dm3] 3L_18029347_SNP [dm6]	T	A	1.825e^-4	0.942	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5668191	3L_5668191_SNP [dm3] 3L_5675091_SNP [dm6]	C	A	1.826e^-4	0.942	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_chinmo
3R	17693745	3R_17693745_SNP [dm3] 3R_21868023_SNP [dm6]	G	C	1.827e^-4	0.942	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
3L	2666434	3L_2666434_SNP [dm3] 3L_2666434_SNP [dm6]	T	G	1.837e^-4	0.942	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
3L	2904581	3L_2904581_SNP [dm3] 3L_2904581_SNP [dm6]	A	T	1.844e^-4	0.942	INTRON Shab
3R	9642887	3R_9642887_SNP [dm3] 3R_13817165_SNP [dm6]	G	C	1.846e^-4	0.942	DOWNSTREAM CR43642 INTERGENIC
3R	23035609	3R_23035609_SNP [dm3] 3R_27209887_SNP [dm6]	G	A	1.852e^-4	0.942	INTERGENIC
3L	11812120	3L_11812120_SNP [dm3] 3L_11819020_SNP [dm6]	A	C	1.852e^-4	0.942	INTRON CG5946
3R	15347570	3R_15347570_SNP [dm3] 3R_19521848_SNP [dm6]	T	G	1.866e^-4	0.942	INTRON Dys
3R	22363654	3R_22363654_SNP [dm3] 3R_26537932_SNP [dm6]	T	A	1.868e^-4	0.942	INTRON scrib
3R	22712105	3R_22712105_SNP [dm3] 3R_26886383_SNP [dm6]	A	G	1.885e^-4	0.942	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9139436	2L_9139436_SNP [dm3] 2L_9139436_SNP [dm6]	C	T	1.894e^-4	0.942	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3L	3024685	3L_3024685_SNP [dm3] 3L_3024685_SNP [dm6]	T	C	1.894e^-4	0.942	SYNONYMOUS_CODING aly
3L	8657986	3L_8657986_SNP [dm3] 3L_8664886_SNP [dm6]	C	A	1.911e^-4	0.942	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	1.914e^-4	0.942	UTR_3_PRIME AdSL INTRON Pxd
2L	18505000	2L_18505000_SNP [dm3] 2L_18505000_SNP [dm6]	C	T	1.915e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25840055	3R_25840055_SNP [dm3] 3R_30014333_SNP [dm6]	G	A	1.923e^-4	0.942	INTRON CG7920
3R	17693774	3R_17693774_SNP [dm3] 3R_21868052_SNP [dm6]	T	G	1.939e^-4	0.942	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
3R	3004559	3R_3004559_SNP [dm3] 3R_7178837_SNP [dm6]	G	A	1.944e^-4	0.942	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20978351	2R_20978351_DEL [dm3] 2R_25090828_DEL [dm6]	TT	T	1.952e^-4	0.942	INTRON lov	transposable element FlyBase
3L	3780020	3L_3780020_SNP [dm3] 3L_3780020_SNP [dm6]	G	A	1.959e^-4	0.942	INTRON CG32264
X	2822065	X_2822065_SNP [dm3] X_2928032_SNP [dm6]	T	A	1.963e^-4	0.942	UPSTREAM CG14424 INTRON kirre
X	21045885	X_21045885_SNP [dm3] X_21174858_SNP [dm6]	T	A	1.965e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21045896	X_21045896_SNP [dm3] X_21174869_SNP [dm6]	C	A	1.965e^-4	0.942	INTERGENIC	transposable element FlyBase
3R	23930610	3R_23930610_SNP [dm3] 3R_28104888_SNP [dm6]	T	C	1.969e^-4	0.942	INTERGENIC
3L	4437670	3L_4437670_SNP [dm3] 3L_4437670_SNP [dm6]	A	C	1.971e^-4	0.942	NON_SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20218235	2R_20218235_SNP [dm3] 2R_24330712_SNP [dm6]	C	T	1.983e^-4	0.942	DOWNSTREAM CR44810 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	12409603	X_12409603_SNP [dm3] X_12515570_SNP [dm6]	A	C	1.988e^-4	0.942	INTRON CG2556
2L	12570172	2L_12570172_SNP [dm3] 2L_12570172_SNP [dm6]	C	T	1.993e^-4	0.942	DOWNSTREAM CR44598 & 1 other INTERGENIC
3L	723422	3L_723422_DEL [dm3] 3L_723422_DEL [dm6]	AGT	TC	1.998e^-4	0.942	INTERGENIC
2R	4247063	2R_4247063_SNP [dm3] 2R_8359558_SNP [dm6]	G	C	2.021e^-4	0.942	SYNONYMOUS_CODING spaw UTR_3_PRIME hubl DOWNSTREAM CG11635 INTRON pdm3
3R	7871965	3R_7871965_SNP [dm3] 3R_12046243_SNP [dm6]	C	T	2.024e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17128524	X_17128524_SNP [dm3] X_17234491_SNP [dm6]	T	A	2.029e^-4	0.942	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8661273	3L_8661273_SNP [dm3] 3L_8668173_SNP [dm6]	C	T	2.037e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6390382	3L_6390382_SNP [dm3] 3L_6397282_SNP [dm6]	T	A	2.041e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11379780	3R_11379780_SNP [dm3] 3R_15554058_SNP [dm6]	C	T	2.044e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11400768	3R_11400768_SNP [dm3] 3R_15575046_SNP [dm6]	G	A	2.044e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2105320	3L_2105320_SNP [dm3] 3L_2105320_SNP [dm6]	T	C	2.068e^-4	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	1668492	3R_1668492_SNP [dm3] 3R_5842770_SNP [dm6]	T	A	2.075e^-4	0.942	INTRON CG1213
X	20463054	X_20463054_SNP [dm3] X_20592027_SNP [dm6]	A	G	2.080e^-4	0.942	UTR_3_PRIME RunxA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14105736	3L_14105736_SNP [dm3] 3L_14112636_SNP [dm6]	T	C	2.100e^-4	0.942	UTR_3_PRIME Sox21b
2L	18504998	2L_18504998_SNP [dm3] 2L_18504998_SNP [dm6]	T	G	2.101e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2717368	3R_2717368_SNP [dm3] 3R_6891646_SNP [dm6]	T	C	2.101e^-4	0.942	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	7046065	2R_7046065_SNP [dm3] 2R_11158560_SNP [dm6]	T	G	2.102e^-4	0.942	UPSTREAM shn INTRON CG13229
3L	16686471	3L_16686471_SNP [dm3] 3L_16693371_SNP [dm6]	C	T	2.111e^-4	0.942	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2L	11415865	2L_11415865_SNP [dm3] 2L_11415865_SNP [dm6]	A	G	2.116e^-4	0.942	INTERGENIC
2L	19337283	2L_19337283_SNP [dm3] 2L_19337283_SNP [dm6]	G	A	2.122e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	10371485	2R_10371485_SNP [dm3] 2R_14483980_SNP [dm6]	C	T	2.125e^-4	0.942	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17294578	2R_17294578_SNP [dm3] 2R_21407073_SNP [dm6]	C	T	2.135e^-4	0.942	INTRON Sdc
3R	11411883	3R_11411883_SNP [dm3] 3R_15586161_SNP [dm6]	A	G	2.140e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23560308	3R_23560308_SNP [dm3] 3R_27734586_SNP [dm6]	C	T	2.152e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11439190	3R_11439190_SNP [dm3] 3R_15613468_SNP [dm6]	G	A	2.154e^-4	0.942	INTERGENIC
2R	17721537	2R_17721537_SNP [dm3] 2R_21834032_SNP [dm6]	A	C	2.155e^-4	0.942	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2R	6784551	2R_6784551_SNP [dm3] 2R_10897046_SNP [dm6]	C	T	2.169e^-4	0.942	UTR_3_PRIME CG12942 DOWNSTREAM CG7712 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4816863	3L_4816863_SNP [dm3] 3L_4816863_SNP [dm6]	T	C	2.171e^-4	0.942	INTRON Dhc64C
3L	4816977	3L_4816977_SNP [dm3] 3L_4816977_SNP [dm6]	A	C	2.171e^-4	0.942	INTRON Dhc64C
2L	19360746	2L_19360746_SNP [dm3] 2L_19360746_SNP [dm6]	A	C	2.184e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5483986	3L_5483986_SNP [dm3] 3L_5490886_SNP [dm6]	T	A	2.190e^-4	0.942	INTERGENIC
3R	9934299	3R_9934299_SNP [dm3] 3R_14108577_SNP [dm6]	C	T	2.195e^-4	0.942	UPSTREAM CG12402 & 1 other DOWNSTREAM CR44237 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11157681	3R_11157681_SNP [dm3] 3R_15331959_SNP [dm6]	A	G	2.197e^-4	0.942	SYNONYMOUS_CODING FK506-bp1 DOWNSTREAM mRpL9
3L	3029518	3L_3029518_SNP [dm3] 3L_3029518_SNP [dm6]	G	T	2.202e^-4	0.942	INTERGENIC
3R	2519804	3R_2519804_SNP [dm3] 3R_6694082_SNP [dm6]	G	A	2.212e^-4	0.942	DOWNSTREAM Ccp84Ad INTERGENIC
3R	9929671	3R_9929671_SNP [dm3] 3R_14103949_SNP [dm6]	C	T	2.227e^-4	0.942	UPSTREAM PK1-R DOWNSTREAM CG12402 INTERGENIC
2R	12033825	2R_12033825_SNP [dm3] 2R_16146320_SNP [dm6]	C	T	2.228e^-4	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3R	24384209	3R_24384209_INS [dm3] 3R_28558487_INS [dm6]	T	TT	2.234e^-4	0.942	INTERGENIC
3R	11434550	3R_11434550_SNP [dm3] 3R_15608828_SNP [dm6]	C	T	2.237e^-4	0.942	INTERGENIC
3L	8696260	3L_8696260_MNP [dm3] 3L_8703160_MNP [dm6]	ATTTT	TCGCA	2.243e^-4	0.942	INTERGENIC
3L	4499600	3L_4499600_SNP [dm3] 3L_4499600_SNP [dm6]	T	G	2.246e^-4	0.942	NON_SYNONYMOUS_CODING CG13720
3R	26246746	3R_26246746_SNP [dm3] 3R_30421024_SNP [dm6]	C	T	2.246e^-4	0.942	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	9006915	2R_9006915_SNP [dm3] 2R_13119410_SNP [dm6]	G	A	2.253e^-4	0.942	INTRON CG13325
3L	2105704	3L_2105704_SNP [dm3] 3L_2105704_SNP [dm6]	G	T	2.256e^-4	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12033328	2R_12033328_SNP [dm3] 2R_16145823_SNP [dm6]	T	C	2.258e^-4	0.942	UTR_3_PRIME Aats-cys DOWNSTREAM Ext2
2L	20501211	2L_20501211_SNP [dm3] 2L_20501211_SNP [dm6]	A	T	2.274e^-4	0.942	INTERGENIC
2L	10118445	2L_10118445_SNP [dm3] 2L_10118445_SNP [dm6]	T	A	2.293e^-4	0.942	INTRON CG44153 & 1 other	transposable element FlyBase
3R	861034	3R_861034_SNP [dm3] 3R_5035312_SNP [dm6]	T	G	2.295e^-4	0.942	INTERGENIC
X	17128528	X_17128528_SNP [dm3] X_17234495_SNP [dm6]	C	A	2.300e^-4	0.942	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2377603	3L_2377603_SNP [dm3] 3L_2377603_SNP [dm6]	C	A	2.332e^-4	0.942	UPSTREAM CG45186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15856461	3L_15856461_SNP [dm3] 3L_15863361_SNP [dm6]	G	A	2.339e^-4	0.942	DOWNSTREAM pHCl INTRON pHCl
3R	3463127	3R_3463127_SNP [dm3] 3R_7637405_SNP [dm6]	T	A	2.351e^-4	0.942	INTRON CG34127
3L	4576300	3L_4576300_SNP [dm3] 3L_4576300_SNP [dm6]	G	A	2.354e^-4	0.942	INTRON CG42540
2R	12229462	2R_12229462_SNP [dm3] 2R_16341957_SNP [dm6]	G	A	2.370e^-4	0.942	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23928538	3R_23928538_SNP [dm3] 3R_28102816_SNP [dm6]	A	C	2.371e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19680643	2L_19680643_SNP [dm3] 2L_19680643_SNP [dm6]	G	T	2.372e^-4	0.942	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3005087	3R_3005087_SNP [dm3] 3R_7179365_SNP [dm6]	T	C	2.374e^-4	0.942	INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12762616	2R_12762616_SNP [dm3] 2R_16875111_SNP [dm6]	G	A	2.388e^-4	0.942	UTR_3_PRIME CG8910 DOWNSTREAM CG6435
3R	3856837	3R_3856837_SNP [dm3] 3R_8031115_SNP [dm6]	G	T	2.390e^-4	0.942	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	16366209	2L_16366209_SNP [dm3] 2L_16366209_SNP [dm6]	G	A	2.392e^-4	0.942	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13935670	2L_13935670_SNP [dm3] 2L_13935670_SNP [dm6]	C	T	2.397e^-4	0.942	UPSTREAM CG16885 INTRON Ance-3
3R	17091215	3R_17091215_SNP [dm3] 3R_21265493_SNP [dm6]	A	G	2.412e^-4	0.942	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	1746707	2L_1746707_SNP [dm3] 2L_1746707_SNP [dm6]	T	C	2.428e^-4	0.942	INTRON CG17646
3L	3873958	3L_3873958_SNP [dm3] 3L_3873958_SNP [dm6]	T	A	2.443e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12348028	2R_12348028_SNP [dm3] 2R_16460523_SNP [dm6]	A	T	2.460e^-4	0.942	INTERGENIC
3R	7854949	3R_7854949_SNP [dm3] 3R_12029227_SNP [dm6]	T	G	2.464e^-4	0.942	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358 INTRON CG31358
3R	19771929	3R_19771929_SNP [dm3] 3R_23946207_SNP [dm6]	A	T	2.465e^-4	0.942	INTRON CG12268
3L	8032936	3L_8032936_SNP [dm3] 3L_8039836_SNP [dm6]	T	G	2.471e^-4	0.942	INTRON nmo
3L	8032941	3L_8032941_SNP [dm3] 3L_8039841_SNP [dm6]	T	C	2.471e^-4	0.942	INTRON nmo
3L	23608180	3L_23608180_SNP [dm3] 3L_23615080_SNP [dm6]	C	A	2.481e^-4	0.942	INTRON AGO3
2R	7046087	2R_7046087_SNP [dm3] 2R_11158582_SNP [dm6]	C	G	2.497e^-4	0.942	UPSTREAM shn INTRON CG13229
3L	11814023	3L_11814023_SNP [dm3] 3L_11820923_SNP [dm6]	A	G	2.498e^-4	0.942	SYNONYMOUS_CODING CG11597 UPSTREAM CG5946 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11434660	3R_11434660_SNP [dm3] 3R_15608938_SNP [dm6]	A	G	2.502e^-4	0.942	INTERGENIC
3L	17092071	3L_17092071_SNP [dm3] 3L_17098971_SNP [dm6]	A	G	2.502e^-4	0.942	INTRON Rbp6
2R	8900997	2R_8900997_SNP [dm3] 2R_13013492_SNP [dm6]	A	T	2.508e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	2.515e^-4	0.942	INTRON CG13579
3R	2997639	3R_2997639_SNP [dm3] 3R_7171917_SNP [dm6]	T	A	2.518e^-4	0.942	INTRON sas
3R	2997658	3R_2997658_SNP [dm3] 3R_7171936_SNP [dm6]	A	G	2.518e^-4	0.942	INTRON sas
3R	24082166	3R_24082166_SNP [dm3] 3R_28256444_SNP [dm6]	G	A	2.521e^-4	0.942	INTERGENIC
X	12608543	X_12608543_SNP [dm3] X_12714510_SNP [dm6]	T	C	2.521e^-4	0.942	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
2R	10438047	2R_10438047_DEL [dm3] 2R_14550542_DEL [dm6]	CGGATACAGA	C	2.525e^-4	0.942	INTRON ttv
X	18189814	X_18189814_SNP [dm3] X_18295781_SNP [dm6]	A	T	2.526e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	9974735	3R_9974735_SNP [dm3] 3R_14149013_SNP [dm6]	T	G	2.532e^-4	0.942	SYNONYMOUS_CODING CG14355
3R	23912018	3R_23912018_SNP [dm3] 3R_28086296_SNP [dm6]	T	A	2.533e^-4	0.942	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
3R	3014864	3R_3014864_SNP [dm3] 3R_7189142_SNP [dm6]	G	T	2.537e^-4	0.942	INTRON lap
2R	11976373	2R_11976373_SNP [dm3] 2R_16088868_SNP [dm6]	A	G	2.542e^-4	0.942	INTRON Dg
2L	19684253	2L_19684253_SNP [dm3] 2L_19684253_SNP [dm6]	A	C	2.545e^-4	0.942	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15336455	2L_15336455_SNP [dm3] 2L_15336455_SNP [dm6]	T	C	2.566e^-4	0.942	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19828890	3R_19828890_SNP [dm3] 3R_24003168_SNP [dm6]	G	T	2.570e^-4	0.942	INTRON KrT95D
3R	5193825	3R_5193825_SNP [dm3] 3R_9368103_SNP [dm6]	A	G	2.574e^-4	0.942	UTR_3_PRIME FER DOWNSTREAM CG8129
3R	14221539	3R_14221539_SNP [dm3] 3R_18395817_SNP [dm6]	C	G	2.580e^-4	0.942	INTRON Vha100-2
3R	10042451	3R_10042451_SNP [dm3] 3R_14216729_SNP [dm6]	C	G	2.586e^-4	0.942	INTRON CG9649
3L	2985327	3L_2985327_SNP [dm3] 3L_2985327_SNP [dm6]	G	C	2.609e^-4	0.942	INTERGENIC
3R	5464836	3R_5464836_SNP [dm3] 3R_9639114_SNP [dm6]	T	C	2.621e^-4	0.942	INTRON Dh44
3R	9642918	3R_9642918_SNP [dm3] 3R_13817196_SNP [dm6]	T	G	2.630e^-4	0.942	DOWNSTREAM CR43642 INTERGENIC
2R	4492677	2R_4492677_SNP [dm3] 2R_8605172_SNP [dm6]	G	T	2.630e^-4	0.942	INTRON rgr
2R	17800912	2R_17800912_SNP [dm3] 2R_21913407_SNP [dm6]	A	C	2.636e^-4	0.942	INTRON Fili
3R	18750467	3R_18750467_SNP [dm3] 3R_22924745_SNP [dm6]	G	C	2.637e^-4	0.942	DOWNSTREAM CG6660 INTRON klg
3R	19828886	3R_19828886_SNP [dm3] 3R_24003164_SNP [dm6]	A	T	2.653e^-4	0.942	INTRON KrT95D
2R	14224789	2R_14224789_SNP [dm3] 2R_18337284_SNP [dm6]	T	G	2.655e^-4	0.942	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21046382	X_21046382_SNP [dm3] X_21175355_SNP [dm6]	A	T	2.656e^-4	0.942	INTERGENIC	transposable element FlyBase
2R	14598918	2R_14598918_SNP [dm3] 2R_18711413_SNP [dm6]	A	G	2.658e^-4	0.942	UPSTREAM CG15087 EXON pncr016:2R
3R	2520417	3R_2520417_SNP [dm3] 3R_6694695_SNP [dm6]	G	A	2.667e^-4	0.942	DOWNSTREAM Ccp84Ac INTERGENIC
2R	10375474	2R_10375474_DEL [dm3] 2R_14487969_DEL [dm6]	TAT	T	2.668e^-4	0.942	INTRON L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14462494	2R_14462494_SNP [dm3] 2R_18574989_SNP [dm6]	T	G	2.670e^-4	0.942	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3482786	3R_3482786_SNP [dm3] 3R_7657064_SNP [dm6]	G	A	2.670e^-4	0.942	INTERGENIC
3L	3026271	3L_3026271_SNP [dm3] 3L_3026271_SNP [dm6]	T	A	2.675e^-4	0.942	INTRON aly
3R	11412154	3R_11412154_SNP [dm3] 3R_15586432_SNP [dm6]	G	A	2.676e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15509506	3L_15509506_SNP [dm3] 3L_15516406_SNP [dm6]	T	G	2.696e^-4	0.942	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25588602	3R_25588602_SNP [dm3] 3R_29762880_SNP [dm6]	T	C	2.704e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	9659905	3R_9659905_SNP [dm3] 3R_13834183_SNP [dm6]	T	A	2.707e^-4	0.942	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3L	18107837	3L_18107837_SNP [dm3] 3L_18114737_SNP [dm6]	C	G	2.709e^-4	0.942	SYNONYMOUS_CODING CG32195 INTRON CG7341	TF binding site mE1_TFBS_sens
X	3463362	X_3463362_SNP [dm3] X_3569329_SNP [dm6]	A	T	2.709e^-4	0.942	UPSTREAM ppk8 INTRON ppk8 & 1 other
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	2.720e^-4	0.942	INTRON CG1213
X	17125972	X_17125972_SNP [dm3] X_17231939_SNP [dm6]	A	T	2.725e^-4	0.942	UPSTREAM CG10597 INTERGENIC	transposable element FlyBase
3R	17091227	3R_17091227_SNP [dm3] 3R_21265505_SNP [dm6]	C	T	2.730e^-4	0.942	DOWNSTREAM Rab1 & 1 other INTERGENIC
X	12642769	X_12642769_SNP [dm3] X_12748736_SNP [dm6]	A	T	2.731e^-4	0.942	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2L	18120437	2L_18120437_SNP [dm3] 2L_18120437_SNP [dm6]	A	T	2.754e^-4	0.942	INTRON CG5758
3L	554818	3L_554818_SNP [dm3] 3L_554818_SNP [dm6]	C	G	2.762e^-4	0.942	INTRON hipk
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	2.763e^-4	0.942	INTRON Eip75B
3L	18026570	3L_18026570_SNP [dm3] 3L_18033470_SNP [dm6]	G	C	2.782e^-4	0.942	INTRON Eip75B
3R	25305787	3R_25305787_INS [dm3] 3R_29480065_INS [dm6]	T	TT	2.817e^-4	0.942	INTRON Ptp99A
3L	15365861	3L_15365861_SNP [dm3] 3L_15372761_SNP [dm6]	G	A	2.823e^-4	0.942	INTERGENIC
3R	13577526	3R_13577526_SNP [dm3] 3R_17751804_SNP [dm6]	C	G	2.829e^-4	0.942	UTR_3_PRIME TyrR
3L	11812350	3L_11812350_SNP [dm3] 3L_11819250_SNP [dm6]	T	C	2.837e^-4	0.942	INTRON CG5946	TF binding site mE1_TFBS_Trl
2L	19364047	2L_19364047_SNP [dm3] 2L_19364047_SNP [dm6]	A	T	2.848e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1303891	2L_1303891_SNP [dm3] 2L_1303891_SNP [dm6]	T	A	2.851e^-4	0.942	INTERGENIC
3R	11157399	3R_11157399_SNP [dm3] 3R_15331677_SNP [dm6]	A	G	2.852e^-4	0.942	UTR_3_PRIME FK506-bp1 DOWNSTREAM mRpL9	TF binding site mE1_TFBS_sens
3R	11434725	3R_11434725_SNP [dm3] 3R_15609003_SNP [dm6]	T	C	2.872e^-4	0.942	INTERGENIC
3R	17694243	3R_17694243_SNP [dm3] 3R_21868521_SNP [dm6]	C	T	2.875e^-4	0.942	SYNONYMOUS_CODING Cby UPSTREAM CG6569 DOWNSTREAM CG31174
3R	2445644	3R_2445644_SNP [dm3] 3R_6619922_SNP [dm6]	C	G	2.882e^-4	0.942	INTERGENIC
3R	918729	3R_918729_SNP [dm3] 3R_5093007_SNP [dm6]	A	T	2.884e^-4	0.942	INTERGENIC
2L	13443377	2L_13443377_SNP [dm3] 2L_13443377_SNP [dm6]	T	C	2.900e^-4	0.942	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad
2R	5387359	2R_5387359_SNP [dm3] 2R_9499854_SNP [dm6]	C	A	2.901e^-4	0.942	INTRON Wnt2
3R	25509567	3R_25509567_SNP [dm3] 3R_29683845_SNP [dm6]	T	G	2.903e^-4	0.942	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
3R	25840062	3R_25840062_SNP [dm3] 3R_30014340_SNP [dm6]	G	C	2.908e^-4	0.942	INTRON CG7920
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	2.909e^-4	0.942	INTRON Sema-2a
3L	8770722	3L_8770722_SNP [dm3] 3L_8777622_SNP [dm6]	G	C	2.909e^-4	0.942	INTRON Fhos
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	2.912e^-4	0.942	INTRON dally
3R	24390576	3R_24390576_SNP [dm3] 3R_28564854_SNP [dm6]	T	C	2.916e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12033450	2R_12033450_SNP [dm3] 2R_16145945_SNP [dm6]	G	C	2.917e^-4	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3L	3755205	3L_3755205_SNP [dm3] 3L_3755205_SNP [dm6]	C	T	2.952e^-4	0.942	UPSTREAM ppk27 INTRON CG32264
2R	16966945	2R_16966945_SNP [dm3] 2R_21079440_SNP [dm6]	C	T	2.958e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16967002	2R_16967002_SNP [dm3] 2R_21079497_SNP [dm6]	T	G	2.958e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12508590	X_12508590_SNP [dm3] X_12614557_SNP [dm6]	T	C	2.979e^-4	0.942	SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621	TF binding site mE1_TFBS_sens
3R	25537518	3R_25537518_SNP [dm3] 3R_29711796_SNP [dm6]	C	A	2.979e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17652421	3R_17652421_DEL [dm3] 3R_21826699_DEL [dm6]	ACACACCAGCA...	A	3.011e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24380884	3R_24380884_SNP [dm3] 3R_28555162_SNP [dm6]	A	G	3.011e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24381105	3R_24381105_SNP [dm3] 3R_28555383_SNP [dm6]	T	C	3.011e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	15615672	2L_15615672_SNP [dm3] 2L_15615672_SNP [dm6]	G	A	3.016e^-4	0.942	SYNONYMOUS_CODING CG15253 UPSTREAM CG15254
3L	7726491	3L_7726491_SNP [dm3] 3L_7733391_SNP [dm6]	T	A	3.023e^-4	0.942	UTR_3_PRIME Snmp2 INTRON CG32373
X	12508100	X_12508100_SNP [dm3] X_12614067_SNP [dm6]	T	A	3.038e^-4	0.942	NON_SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621
3L	6390425	3L_6390425_SNP [dm3] 3L_6397325_SNP [dm6]	C	A	3.039e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17772245	2R_17772245_SNP [dm3] 2R_21884740_SNP [dm6]	C	G	3.063e^-4	0.942	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15616803	2L_15616803_SNP [dm3] 2L_15616803_SNP [dm6]	A	G	3.078e^-4	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
3L	14678830	3L_14678830_SNP [dm3] 3L_14685730_SNP [dm6]	T	C	3.080e^-4	0.942	UTR_3_PRIME CG5048 INTRON ome
3L	8994995	3L_8994995_SNP [dm3] 3L_9001895_SNP [dm6]	G	A	3.084e^-4	0.942	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12844918	3R_12844918_DEL [dm3] 3R_17019196_DEL [dm6]	GTG	G	3.094e^-4	0.942	UTR_3_PRIME AdSL INTRON Pxd
3R	11380001	3R_11380001_SNP [dm3] 3R_15554279_SNP [dm6]	C	T	3.101e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_sens
3R	893054	3R_893054_SNP [dm3] 3R_5067332_SNP [dm6]	G	A	3.105e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11649473	3L_11649473_SNP [dm3] 3L_11656373_SNP [dm6]	T	G	3.108e^-4	0.942	UPSTREAM mir-274 INTRON CG32085
3R	11437299	3R_11437299_SNP [dm3] 3R_15611577_SNP [dm6]	C	T	3.133e^-4	0.942	INTERGENIC
3R	25636171	3R_25636171_SNP [dm3] 3R_29810449_SNP [dm6]	A	G	3.148e^-4	0.942	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad
3R	17842994	3R_17842994_SNP [dm3] 3R_22017272_SNP [dm6]	A	T	3.150e^-4	0.942	INTRON CG6439	TF binding site mE1_TFBS_sens
2R	12414382	2R_12414382_SNP [dm3] 2R_16526877_SNP [dm6]	A	G	3.158e^-4	0.942	INTRON Sema-2a
3L	2983899	3L_2983899_SNP [dm3] 3L_2983899_SNP [dm6]	A	G	3.163e^-4	0.942	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17857779	3R_17857779_SNP [dm3] 3R_22032057_SNP [dm6]	C	G	3.167e^-4	0.942	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3462503	3R_3462503_SNP [dm3] 3R_7636781_SNP [dm6]	G	C	3.201e^-4	0.942	INTRON CG34127
2L	11017873	2L_11017873_SNP [dm3] 2L_11017873_SNP [dm6]	T	C	3.202e^-4	0.942	SYNONYMOUS_CODING CG14913 INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19371146	2L_19371146_SNP [dm3] 2L_19371146_SNP [dm6]	C	T	3.208e^-4	0.942	SYNONYMOUS_CODING CG17349
X	2775990	X_2775990_SNP [dm3] X_2881957_SNP [dm6]	G	C	3.210e^-4	0.942	DOWNSTREAM CG14418 INTRON kirre
2R	12294542	2R_12294542_SNP [dm3] 2R_16407037_SNP [dm6]	C	T	3.211e^-4	0.942	INTRON Sema-2b
3R	18460303	3R_18460303_SNP [dm3] 3R_22634581_SNP [dm6]	G	A	3.211e^-4	0.942	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4143388	2R_4143388_SNP [dm3] 2R_8255883_SNP [dm6]	T	G	3.220e^-4	0.942	INTRON CG14760
2L	19390430	2L_19390430_INS [dm3] 2L_19390430_INS [dm6]	A	GT	3.233e^-4	0.942	UTR_3_PRIME CG17544 UPSTREAM CG17549
2L	19390432	2L_19390432_SNP [dm3] 2L_19390432_SNP [dm6]	C	A	3.233e^-4	0.942	UTR_3_PRIME CG17544 UPSTREAM CG17549
2L	19390435	2L_19390435_DEL [dm3] 2L_19390435_DEL [dm6]	GTT	G	3.233e^-4	0.942	UTR_3_PRIME CG17544 UPSTREAM CG17549
3L	4814253	3L_4814253_SNP [dm3] 3L_4814253_SNP [dm6]	T	C	3.255e^-4	0.942	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22874765	3L_22874765_SNP [dm3] 3L_22881665_SNP [dm6]	G	A	3.257e^-4	0.942	DOWNSTREAM Ssl1 INTRON slif	TF binding site BDTNP1_TFBS_twi
2L	18505008	2L_18505008_SNP [dm3] 2L_18505008_SNP [dm6]	G	A	3.262e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505022	2L_18505022_DEL [dm3] 2L_18505022_DEL [dm6]	AGAAA	A	3.262e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505028	2L_18505028_SNP [dm3] 2L_18505028_SNP [dm6]	T	C	3.262e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505128	2L_18505128_DEL [dm3] 2L_18505128_DEL [dm6]	AAGTC	A	3.262e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505136	2L_18505136_DEL [dm3] 2L_18505136_DEL [dm6]	TTA	C	3.262e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9660057	3R_9660057_SNP [dm3] 3R_13834335_SNP [dm6]	A	C	3.263e^-4	0.942	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	3485530	3R_3485530_SNP [dm3] 3R_7659808_SNP [dm6]	T	A	3.265e^-4	0.942	INTRON Nlg1
3L	12965613	3L_12965613_SNP [dm3] 3L_12972513_SNP [dm6]	A	C	3.266e^-4	0.942	UTR_5_PRIME CG10749 UPSTREAM CG10748
2R	12294501	2R_12294501_SNP [dm3] 2R_16406996_SNP [dm6]	C	T	3.271e^-4	0.942	INTRON Sema-2b
3L	10066572	3L_10066572_SNP [dm3] 3L_10073472_SNP [dm6]	C	T	3.276e^-4	0.942	INTRON dpr6
3R	23422696	3R_23422696_SNP [dm3] 3R_27596974_SNP [dm6]	G	A	3.280e^-4	0.942	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
3L	10579537	3L_10579537_SNP [dm3] 3L_10586437_SNP [dm6]	C	T	3.284e^-4	0.942	INTRON A2bp1
2L	20139493	2L_20139493_SNP [dm3] 2L_20139493_SNP [dm6]	A	G	3.286e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10438065	2R_10438065_SNP [dm3] 2R_14550560_SNP [dm6]	G	A	3.287e^-4	0.942	INTRON ttv
2R	17430615	2R_17430615_SNP [dm3] 2R_21543110_SNP [dm6]	C	G	3.322e^-4	0.942	INTRON Egfr
3R	22932893	3R_22932893_SNP [dm3] 3R_27107171_SNP [dm6]	T	G	3.340e^-4	0.942	UPSTREAM CG6074 INTERGENIC
2R	14904651	2R_14904651_SNP [dm3] 2R_19017146_SNP [dm6]	G	A	3.341e^-4	0.942	INTERGENIC
3R	2270506	3R_2270506_SNP [dm3] 3R_6444784_SNP [dm6]	C	T	3.346e^-4	0.942	UTR_3_PRIME gpp INTRON gpp
X	6837495	X_6837495_SNP [dm3] X_6943462_SNP [dm6]	A	G	3.361e^-4	0.942	INTRON CG14431
2R	17964424	2R_17964424_SNP [dm3] 2R_22076919_SNP [dm6]	C	T	3.386e^-4	0.942	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11976356	2R_11976356_SNP [dm3] 2R_16088851_SNP [dm6]	C	A	3.405e^-4	0.942	INTRON Dg
2L	10910615	2L_10910615_SNP [dm3] 2L_10910615_SNP [dm6]	T	A	3.414e^-4	0.942	UTR_5_PRIME CG14069 UPSTREAM CG14069
3R	3252759	3R_3252759_SNP [dm3] 3R_7427037_SNP [dm6]	C	T	3.415e^-4	0.942	INTERGENIC
3L	3779539	3L_3779539_SNP [dm3] 3L_3779539_SNP [dm6]	T	A	3.432e^-4	0.942	INTRON CG32264
2L	13935674	2L_13935674_SNP [dm3] 2L_13935674_SNP [dm6]	A	G	3.434e^-4	0.942	UPSTREAM CG16885 INTRON Ance-3
3R	11411898	3R_11411898_SNP [dm3] 3R_15586176_SNP [dm6]	G	A	3.436e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11137048	3L_11137048_SNP [dm3] 3L_11143948_SNP [dm6]	T	G	3.444e^-4	0.942	INTRON CG32082
2L	955580	2L_955580_SNP [dm3] 2L_955580_SNP [dm6]	G	A	3.452e^-4	0.942	INTRON CG4341
2L	7238830	2L_7238830_SNP [dm3] 2L_7238830_SNP [dm6]	A	C	3.454e^-4	0.942	INTRON Ndae1
3L	3727532	3L_3727532_SNP [dm3] 3L_3727532_SNP [dm6]	G	C	3.458e^-4	0.942	INTRON CG32264
3R	22363770	3R_22363770_SNP [dm3] 3R_26538048_SNP [dm6]	G	A	3.463e^-4	0.942	INTRON scrib
3R	2603998	3R_2603998_SNP [dm3] 3R_6778276_SNP [dm6]	T	C	3.465e^-4	0.942	DOWNSTREAM CR42721 INTRON CR42721 EXON CR43435
X	21048267	X_21048267_SNP [dm3] X_21177240_SNP [dm6]	T	C	3.468e^-4	0.942	INTERGENIC
2L	19364040	2L_19364040_SNP [dm3] 2L_19364040_SNP [dm6]	A	G	3.470e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22450027	3R_22450027_SNP [dm3] 3R_26624305_SNP [dm6]	A	T	3.473e^-4	0.942	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
3R	11402862	3R_11402862_SNP [dm3] 3R_15577140_SNP [dm6]	G	C	3.475e^-4	0.942	INTERGENIC
3R	26366847	3R_26366847_SNP [dm3] 3R_30541125_SNP [dm6]	A	G	3.486e^-4	0.942	INTRON tmod
2R	6943770	2R_6943770_SNP [dm3] 2R_11056265_SNP [dm6]	T	G	3.494e^-4	0.942	INTRON luna
3L	3024548	3L_3024548_SNP [dm3] 3L_3024548_SNP [dm6]	C	T	3.496e^-4	0.942	UTR_3_PRIME aly
2R	6784571	2R_6784571_SNP [dm3] 2R_10897066_SNP [dm6]	T	A	3.496e^-4	0.942	UTR_3_PRIME CG12942 DOWNSTREAM CG7712 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19364168	2L_19364168_SNP [dm3] 2L_19364168_SNP [dm6]	A	C	3.518e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9928632	2L_9928632_SNP [dm3] 2L_9928632_SNP [dm6]	T	A	3.548e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	9928646	2L_9928646_SNP [dm3] 2L_9928646_SNP [dm6]	A	C	3.548e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
X	6837605	X_6837605_INS [dm3] X_6943572_INS [dm6]	A	ATA	3.551e^-4	0.942	INTRON CG14431
3R	25305746	3R_25305746_SNP [dm3] 3R_29480024_SNP [dm6]	C	A	3.582e^-4	0.942	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	19269142	2L_19269142_SNP [dm3] 2L_19269142_SNP [dm6]	A	G	3.583e^-4	0.942	EXON CR44190
3R	6361206	3R_6361206_DEL [dm3] 3R_10535484_DEL [dm6]	TGGC	G	3.594e^-4	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13716098	3R_13716098_SNP [dm3] 3R_17890376_SNP [dm6]	C	T	3.604e^-4	0.942	INTRON Rim
3R	13716109	3R_13716109_SNP [dm3] 3R_17890387_SNP [dm6]	C	T	3.604e^-4	0.942	INTRON Rim
3L	15856460	3L_15856460_SNP [dm3] 3L_15863360_SNP [dm6]	A	T	3.606e^-4	0.942	DOWNSTREAM pHCl INTRON pHCl
2L	14470032	2L_14470032_DEL [dm3] 2L_14470032_DEL [dm6]	GA	G	3.611e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3665496	2L_3665496_SNP [dm3] 2L_3665496_SNP [dm6]	T	A	3.611e^-4	0.942	INTRON CG34340
2R	7655551	2R_7655551_SNP [dm3] 2R_11768046_SNP [dm6]	T	C	3.620e^-4	0.942	UPSTREAM CG13193 INTRON ths
2L	18152978	2L_18152978_SNP [dm3] 2L_18152978_SNP [dm6]	G	A	3.642e^-4	0.942	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	3938070	3L_3938070_SNP [dm3] 3L_3938070_SNP [dm6]	A	G	3.656e^-4	0.942	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17824299	3L_17824299_SNP [dm3] 3L_17831199_SNP [dm6]	G	C	3.657e^-4	0.942	INTRON Grd
3L	11749513	3L_11749513_SNP [dm3] 3L_11756413_SNP [dm6]	A	G	3.675e^-4	0.942	INTRON CG6024
3R	15794938	3R_15794938_INS [dm3] 3R_19969216_INS [dm6]	A	AC	3.681e^-4	0.942	INTRON Hs6st
2L	8401649	2L_8401649_SNP [dm3] 2L_8401649_SNP [dm6]	A	G	3.689e^-4	0.942	UTR_3_PRIME fy DOWNSTREAM CG31898
X	6731945	X_6731945_SNP [dm3] X_6837912_SNP [dm6]	T	C	3.695e^-4	0.942	UTR_3_PRIME nonC DOWNSTREAM CG14435 & 1 other
2R	19311692	2R_19311692_SNP [dm3] 2R_23424169_SNP [dm6]	T	A	3.701e^-4	0.942	INTRON CG9815
3R	3481711	3R_3481711_SNP [dm3] 3R_7655989_SNP [dm6]	C	A	3.705e^-4	0.942	INTERGENIC
3R	23035435	3R_23035435_SNP [dm3] 3R_27209713_SNP [dm6]	A	T	3.708e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18838171	3L_18838171_SNP [dm3] 3L_18845071_SNP [dm6]	A	C	3.710e^-4	0.942	INTRON Indy	TF binding site BDTNP1_TFBS_dl
2R	11311533	2R_11311533_DEL [dm3] 2R_15424028_DEL [dm6]	TTCCTTGGCAATT...	T	3.715e^-4	0.942	CODON_DELETION CG30472 UPSTREAM CG43729 INTRON CG43729
3R	18729663	3R_18729663_SNP [dm3] 3R_22903941_SNP [dm6]	T	C	3.718e^-4	0.942	INTRON klg	TF binding site mE1_TFBS_chinmo
3R	18729675	3R_18729675_SNP [dm3] 3R_22903953_SNP [dm6]	G	A	3.718e^-4	0.942	INTRON klg
3R	2717848	3R_2717848_SNP [dm3] 3R_6892126_SNP [dm6]	G	C	3.720e^-4	0.942	DOWNSTREAM CR45559 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	13787937	2R_13787937_SNP [dm3] 2R_17900432_SNP [dm6]	T	C	3.729e^-4	0.942	INTRON Elk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	11411525	3R_11411525_SNP [dm3] 3R_15585803_SNP [dm6]	C	T	3.738e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16261088	3R_16261088_SNP [dm3] 3R_20435366_SNP [dm6]	G	A	3.740e^-4	0.942	INTRON Gfrl	TF binding site mE1_TFBS_inv
2L	11925517	2L_11925517_SNP [dm3] 2L_11925517_SNP [dm6]	A	G	3.740e^-4	0.942	INTRON Pde1c
2R	17294600	2R_17294600_SNP [dm3] 2R_21407095_SNP [dm6]	C	A	3.744e^-4	0.942	INTRON Sdc
3R	18910908	3R_18910908_SNP [dm3] 3R_23085186_SNP [dm6]	G	A	3.750e^-4	0.942	INTRON CG13830
3R	18910961	3R_18910961_SNP [dm3] 3R_23085239_SNP [dm6]	A	C	3.750e^-4	0.942	INTRON CG13830
3R	18910963	3R_18910963_SNP [dm3] 3R_23085241_SNP [dm6]	G	A	3.750e^-4	0.942	INTRON CG13830
3R	2752530	3R_2752530_SNP [dm3] 3R_6926808_SNP [dm6]	C	A	3.754e^-4	0.942	INTRON Antp
3L	18025422	3L_18025422_SNP [dm3] 3L_18032322_SNP [dm6]	C	G	3.755e^-4	0.942	INTRON Eip75B
3R	17576290	3R_17576290_SNP [dm3] 3R_21750568_SNP [dm6]	C	T	3.758e^-4	0.942	SYNONYMOUS_CODING CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11970977	2R_11970977_SNP [dm3] 2R_16083472_SNP [dm6]	G	C	3.766e^-4	0.942	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
3R	2520804	3R_2520804_SNP [dm3] 3R_6695082_SNP [dm6]	T	A	3.768e^-4	0.942	DOWNSTREAM Ccp84Ac INTERGENIC
3R	18460562	3R_18460562_SNP [dm3] 3R_22634840_SNP [dm6]	T	A	3.780e^-4	0.942	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19084852	3R_19084852_INS [dm3] 3R_23259130_INS [dm6]	T	GA	3.785e^-4	0.942	INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9552297	3L_9552297_SNP [dm3] 3L_9559197_SNP [dm6]	A	T	3.793e^-4	0.942	INTRON CG42673
3L	9552309	3L_9552309_SNP [dm3] 3L_9559209_SNP [dm6]	T	G	3.793e^-4	0.942	INTRON CG42673
2R	16966955	2R_16966955_SNP [dm3] 2R_21079450_SNP [dm6]	A	G	3.801e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9576228	3L_9576228_SNP [dm3] 3L_9583128_SNP [dm6]	C	T	3.804e^-4	0.942	UPSTREAM CG42673 INTRON CG42673
3L	11590967	3L_11590967_SNP [dm3] 3L_11597867_SNP [dm6]	A	T	3.818e^-4	0.942	INTRON CG7368
3R	9661664	3R_9661664_SNP [dm3] 3R_13835942_SNP [dm6]	C	T	3.824e^-4	0.942	SYNONYMOUS_CODING Nsf2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17490590	2R_17490590_SNP [dm3] 2R_21603085_SNP [dm6]	C	T	3.825e^-4	0.942	INTERGENIC
3L	1922605	3L_1922605_SNP [dm3] 3L_1922605_SNP [dm6]	T	C	3.825e^-4	0.942	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	23601204	3L_23601204_SNP [dm3] 3L_23608104_SNP [dm6]	T	A	3.829e^-4	0.942	INTRON AGO3
3R	23114281	3R_23114281_SNP [dm3] 3R_27288559_SNP [dm6]	G	T	3.832e^-4	0.942	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	20294661	3R_20294661_SNP [dm3] 3R_24468939_SNP [dm6]	T	C	3.837e^-4	0.942	UPSTREAM CG31128 INTERGENIC
3R	14092346	3R_14092346_DEL [dm3] 3R_18266624_DEL [dm6]	TC	T	3.840e^-4	0.942	INTERGENIC
2R	13766470	2R_13766470_SNP [dm3] 2R_17878965_SNP [dm6]	T	C	3.843e^-4	0.942	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
3R	10045322	3R_10045322_SNP [dm3] 3R_14219600_SNP [dm6]	T	C	3.846e^-4	0.942	DOWNSTREAM CG33109 INTRON CG31326
3R	2816089	3R_2816089_SNP [dm3] 3R_6990367_SNP [dm6]	T	C	3.857e^-4	0.942	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16547975	3L_16547975_SNP [dm3] 3L_16554875_SNP [dm6]	A	G	3.863e^-4	0.942	INTERGENIC
3R	728922	3R_728922_SNP [dm3] 3R_4903200_SNP [dm6]	G	C	3.866e^-4	0.942	INTERGENIC
3L	5511695	3L_5511695_DEL [dm3] 3L_5518595_DEL [dm6]	TA	G	3.869e^-4	0.942	UTR_5_PRIME Lkr
3R	11157612	3R_11157612_SNP [dm3] 3R_15331890_SNP [dm6]	A	G	3.883e^-4	0.942	SYNONYMOUS_CODING FK506-bp1 DOWNSTREAM mRpL9
2R	19181637	2R_19181637_SNP [dm3] 2R_23294114_SNP [dm6]	A	C	3.895e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15615918	2L_15615918_SNP [dm3] 2L_15615918_SNP [dm6]	A	G	3.901e^-4	0.942	SYNONYMOUS_CODING CG15253
2R	16749783	2R_16749783_SNP [dm3] 2R_20862278_SNP [dm6]	C	T	3.920e^-4	0.942	INTERGENIC
X	20968150	X_20968150_SNP [dm3] X_21097123_SNP [dm6]	G	T	3.923e^-4	0.942	INTRON stg1 & 2 others	transposable element FlyBase
2L	15360251	2L_15360251_SNP [dm3] 2L_15360251_SNP [dm6]	A	G	3.929e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
2L	15360253	2L_15360253_DEL [dm3] 2L_15360253_DEL [dm6]	TA	T	3.929e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
X	4895638	X_4895638_SNP [dm3] X_5001605_SNP [dm6]	G	T	3.930e^-4	0.942	INTRON CR44833	regulatory region REDfly_CRMs
3R	15794936	3R_15794936_SNP [dm3] 3R_19969214_SNP [dm6]	C	G	3.936e^-4	0.942	INTRON Hs6st
2L	9244884	2L_9244884_SNP [dm3] 2L_9244884_SNP [dm6]	G	A	3.947e^-4	0.942	INTRON tai
3R	17091206	3R_17091206_SNP [dm3] 3R_21265484_SNP [dm6]	G	A	3.967e^-4	0.942	DOWNSTREAM Rab1 & 1 other INTERGENIC
3L	3779803	3L_3779803_SNP [dm3] 3L_3779803_SNP [dm6]	G	T	3.982e^-4	0.942	INTRON CG32264
3L	7221678	3L_7221678_SNP [dm3] 3L_7228578_SNP [dm6]	A	C	3.986e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7221715	3L_7221715_SNP [dm3] 3L_7228615_SNP [dm6]	A	C	3.986e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	16882411	3R_16882411_SNP [dm3] 3R_21056689_SNP [dm6]	C	G	3.992e^-4	0.942	SPLICE_SITE_REGION Mvl INTRON Mvl
3L	16759885	3L_16759885_SNP [dm3] 3L_16766785_SNP [dm6]	A	T	4.010e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759887	3L_16759887_SNP [dm3] 3L_16766787_SNP [dm6]	C	G	4.010e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759890	3L_16759890_INS [dm3] 3L_16766790_INS [dm6]	T	TTTGTGTCCC	4.010e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759892	3L_16759892_SNP [dm3] 3L_16766792_SNP [dm6]	A	C	4.010e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19890086	3R_19890086_SNP [dm3] 3R_24064364_SNP [dm6]	C	A	4.016e^-4	0.942	DOWNSTREAM 4EHP INTRON 4EHP
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	4.020e^-4	0.942	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16759874	3L_16759874_SNP [dm3] 3L_16766774_SNP [dm6]	G	C	4.026e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759875	3L_16759875_SNP [dm3] 3L_16766775_SNP [dm6]	T	A	4.026e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759876	3L_16759876_INS [dm3] 3L_16766776_INS [dm6]	T	TAAA	4.026e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1423730	3L_1423730_DEL [dm3] 3L_1423730_DEL [dm6]	TG	T	4.033e^-4	0.942	UPSTREAM CG9173 INTRON Ptp61F
3R	19306698	3R_19306698_SNP [dm3] 3R_23480976_SNP [dm6]	A	T	4.033e^-4	0.942	UPSTREAM Ir94f INTERGENIC
3R	16904703	3R_16904703_SNP [dm3] 3R_21078981_SNP [dm6]	G	T	4.036e^-4	0.942	INTRON HHEX
2R	6074991	2R_6074991_SNP [dm3] 2R_10187486_SNP [dm6]	G	C	4.046e^-4	0.942	INTRON KCNQ
2L	1302328	2L_1302328_SNP [dm3] 2L_1302328_SNP [dm6]	A	G	4.049e^-4	0.942	INTERGENIC
3R	19307453	3R_19307453_SNP [dm3] 3R_23481731_SNP [dm6]	A	G	4.050e^-4	0.942	UPSTREAM Ir94f INTERGENIC
3R	19598167	3R_19598167_SNP [dm3] 3R_23772445_SNP [dm6]	T	C	4.052e^-4	0.942	SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	27015040	3R_27015040_SNP [dm3] 3R_31189318_SNP [dm6]	C	A	4.083e^-4	0.942	INTRON mesh
3R	10782897	3R_10782897_SNP [dm3] 3R_14957175_SNP [dm6]	G	T	4.094e^-4	0.942	INTERGENIC
3L	3723324	3L_3723324_INS [dm3] 3L_3723324_INS [dm6]	G	GGTGTAGG	4.099e^-4	0.942	INTRON CG32264
2R	16458830	2R_16458830_SNP [dm3] 2R_20571325_SNP [dm6]	A	G	4.100e^-4	0.942	INTRON qsm
X	16896683	X_16896683_SNP [dm3] X_17002650_SNP [dm6]	A	T	4.108e^-4	0.942	INTRON CG45002
X	18197354	X_18197354_SNP [dm3] X_18303321_SNP [dm6]	T	C	4.112e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	910322	3R_910322_SNP [dm3] 3R_5084600_SNP [dm6]	C	T	4.118e^-4	0.942	NON_SYNONYMOUS_CODING corto	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25725233	3R_25725233_DEL [dm3] 3R_29899511_DEL [dm6]	TGT	T	4.120e^-4	0.942	DOWNSTREAM CG31038 INTRON CG31038
2R	10584746	2R_10584746_SNP [dm3] 2R_14697241_SNP [dm6]	C	G	4.129e^-4	0.942	INTRON mspo
2L	1278258	2L_1278258_SNP [dm3] 2L_1278258_SNP [dm6]	A	G	4.135e^-4	0.942	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11453614	3R_11453614_SNP [dm3] 3R_15627892_SNP [dm6]	G	A	4.138e^-4	0.942	INTERGENIC
3R	11457004	3R_11457004_SNP [dm3] 3R_15631282_SNP [dm6]	C	G	4.138e^-4	0.942	INTERGENIC
2R	17263962	2R_17263962_SNP [dm3] 2R_21376457_SNP [dm6]	T	A	4.143e^-4	0.942	INTRON cv-2
3R	20989972	3R_20989972_SNP [dm3] 3R_25164250_SNP [dm6]	C	T	4.149e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11833289	3L_11833289_SNP [dm3] 3L_11840189_SNP [dm6]	A	T	4.158e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16145444	3R_16145444_SNP [dm3] 3R_20319722_SNP [dm6]	T	A	4.168e^-4	0.942	INTRON CG42668
3R	16145446	3R_16145446_SNP [dm3] 3R_20319724_SNP [dm6]	A	C	4.168e^-4	0.942	INTRON CG42668
3R	16145451	3R_16145451_SNP [dm3] 3R_20319729_SNP [dm6]	G	A	4.168e^-4	0.942	INTRON CG42668
3R	16596898	3R_16596898_SNP [dm3] 3R_20771176_SNP [dm6]	G	A	4.168e^-4	0.942	SYNONYMOUS_CODING Takl1 INTRON Syp	TF binding site mE1_TFBS_cad
3R	13750947	3R_13750947_SNP [dm3] 3R_17925225_SNP [dm6]	C	T	4.198e^-4	0.942	INTRON cpo
3R	18729690	3R_18729690_SNP [dm3] 3R_22903968_SNP [dm6]	A	T	4.221e^-4	0.942	INTRON klg
X	12642767	X_12642767_SNP [dm3] X_12748734_SNP [dm6]	T	C	4.222e^-4	0.942	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3R	12578690	3R_12578690_SNP [dm3] 3R_16752968_SNP [dm6]	A	C	4.229e^-4	0.942	UPSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16319016	2L_16319016_SNP [dm3] 2L_16319016_SNP [dm6]	A	G	4.230e^-4	0.942	INTRON cact	TF binding site BDTNP1_TFBS_twi
3R	20424945	3R_20424945_SNP [dm3] 3R_24599223_SNP [dm6]	A	C	4.234e^-4	0.942	INTRON mld	TF binding site mE1_TFBS_HSA
3R	4098160	3R_4098160_SNP [dm3] 3R_8272438_SNP [dm6]	C	A	4.240e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
3R	19506982	3R_19506982_SNP [dm3] 3R_23681260_SNP [dm6]	T	C	4.247e^-4	0.942	SYNONYMOUS_CODING eIF-3p66	TF binding site mE1_TFBS_cad
3L	2285957	3L_2285957_DEL [dm3] 3L_2285957_DEL [dm6]	AGGCGCCATATCA...	A	4.257e^-4	0.942	INTRON MsR2
2R	13177513	2R_13177513_SNP [dm3] 2R_17290008_SNP [dm6]	T	A	4.273e^-4	0.942	INTRON mbl
X	17781249	X_17781249_SNP [dm3] X_17887216_SNP [dm6]	A	T	4.300e^-4	0.942	UTR_5_PRIME mnb UPSTREAM CG6788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6550161	3L_6550161_SNP [dm3] 3L_6557061_SNP [dm6]	A	T	4.308e^-4	0.942	INTRON CG18769
3L	11812367	3L_11812367_SNP [dm3] 3L_11819267_SNP [dm6]	T	G	4.310e^-4	0.942	INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4210558	2L_4210558_SNP [dm3] 2L_4210558_SNP [dm6]	A	T	4.316e^-4	0.942	INTRON ft	TF binding site mE1_TFBS_inv
2R	17287515	2R_17287515_SNP [dm3] 2R_21400010_SNP [dm6]	A	T	4.320e^-4	0.942	INTRON Sdc
2R	13247475	2R_13247475_INS [dm3] 2R_17359970_INS [dm6]	G	GTG	4.328e^-4	0.942	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11403600	3R_11403600_SNP [dm3] 3R_15577878_SNP [dm6]	G	A	4.330e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11404523	3R_11404523_SNP [dm3] 3R_15578801_SNP [dm6]	C	T	4.330e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15934414	2L_15934414_SNP [dm3] 2L_15934414_SNP [dm6]	G	A	4.331e^-4	0.942	INTRON beat-Ib
2R	7751620	2R_7751620_SNP [dm3] 2R_11864115_SNP [dm6]	A	G	4.332e^-4	0.942	UPSTREAM CG42531 & 1 other INTERGENIC
3R	10927336	3R_10927336_SNP [dm3] 3R_15101614_SNP [dm6]	A	G	4.340e^-4	0.942	SYNONYMOUS_CODING CG42788
2R	19185355	2R_19185355_SNP [dm3] 2R_23297832_SNP [dm6]	G	A	4.343e^-4	0.942	INTERGENIC
3R	14903067	3R_14903067_SNP [dm3] 3R_19077345_SNP [dm6]	A	G	4.344e^-4	0.942	INTRON cdi
2R	12771003	2R_12771003_SNP [dm3] 2R_16883498_SNP [dm6]	G	A	4.346e^-4	0.942	SYNONYMOUS_CODING CG6472 INTRON CG8910	TF binding site mE1_TFBS_chinmo
2R	8156978	2R_8156978_SNP [dm3] 2R_12269473_SNP [dm6]	A	G	4.350e^-4	0.942	INTRON Cam
2L	19336229	2L_19336229_SNP [dm3] 2L_19336229_SNP [dm6]	A	T	4.358e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
X	16659550	X_16659550_SNP [dm3] X_16765517_SNP [dm6]	G	T	4.366e^-4	0.942	INTRON if
3L	11703507	3L_11703507_SNP [dm3] 3L_11710407_SNP [dm6]	G	T	4.373e^-4	0.942	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24381047	3R_24381047_SNP [dm3] 3R_28555325_SNP [dm6]	G	A	4.374e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	4201812	2L_4201812_SNP [dm3] 2L_4201812_SNP [dm6]	T	A	4.376e^-4	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201841	2L_4201841_SNP [dm3] 2L_4201841_SNP [dm6]	G	C	4.376e^-4	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	19403343	2L_19403343_SNP [dm3] 2L_19403343_SNP [dm6]	A	G	4.384e^-4	0.942	UTR_3_PRIME Pax DOWNSTREAM snmRNA:359 INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	18504997	2L_18504997_SNP [dm3] 2L_18504997_SNP [dm6]	G	C	4.387e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15794423	3R_15794423_DEL [dm3] 3R_19968701_DEL [dm6]	TT	T	4.388e^-4	0.942	INTRON Hs6st
X	21045993	X_21045993_DEL [dm3] X_21174966_DEL [dm6]	TGT	T	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046277	X_21046277_SNP [dm3] X_21175250_SNP [dm6]	G	A	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046345	X_21046345_SNP [dm3] X_21175318_SNP [dm6]	C	T	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046362	X_21046362_SNP [dm3] X_21175335_SNP [dm6]	C	T	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046424	X_21046424_DEL [dm3] X_21175397_DEL [dm6]	GT	G	4.389e^-4	0.942	INTERGENIC
X	21046446	X_21046446_SNP [dm3] X_21175419_SNP [dm6]	A	T	4.389e^-4	0.942	INTERGENIC
X	21046951	X_21046951_DEL [dm3] X_21175924_DEL [dm6]	TAACGCTCACAAACCGCACT...	T	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21047005	X_21047005_DEL [dm3] X_21175978_DEL [dm6]	GATATTTTTTGACATTTATA...	G	4.389e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21047206	X_21047206_SNP [dm3] X_21176179_SNP [dm6]	T	G	4.389e^-4	0.942	INTERGENIC
X	21047306	X_21047306_SNP [dm3] X_21176279_SNP [dm6]	A	T	4.389e^-4	0.942	INTERGENIC
X	21047308	X_21047308_DEL [dm3] X_21176281_DEL [dm6]	GCCATTCAGTT...	G	4.389e^-4	0.942	INTERGENIC
X	21047328	X_21047328_DEL [dm3] X_21176301_DEL [dm6]	CTCTTTGCGTTCACTTCGTA...	C	4.389e^-4	0.942	INTERGENIC
X	21047357	X_21047357_DEL [dm3] X_21176330_DEL [dm6]	ACTTTT	C	4.389e^-4	0.942	INTERGENIC
X	21047366	X_21047366_DEL [dm3] X_21176339_DEL [dm6]	CG	A	4.389e^-4	0.942	INTERGENIC
X	21047372	X_21047372_DEL [dm3] X_21176345_DEL [dm6]	ATCGAAATGA	A	4.389e^-4	0.942	INTERGENIC
X	21047402	X_21047402_DEL [dm3] X_21176375_DEL [dm6]	GAATGAATGAAG...	G	4.389e^-4	0.942	INTERGENIC
X	18073716	X_18073716_SNP [dm3] X_18179683_SNP [dm6]	G	A	4.393e^-4	0.942	UPSTREAM Andorra INTRON Frq2
2R	5756713	2R_5756713_SNP [dm3] 2R_9869208_SNP [dm6]	A	G	4.401e^-4	0.942	DOWNSTREAM CR45138 INTRON cbx	transposable element FlyBase
3R	18106323	3R_18106323_SNP [dm3] 3R_22280601_SNP [dm6]	C	G	4.402e^-4	0.942	INTRON SKIP
3R	13681407	3R_13681407_SNP [dm3] 3R_17855685_SNP [dm6]	G	A	4.407e^-4	0.942	INTRON tinc
3R	9024772	3R_9024772_SNP [dm3] 3R_13199050_SNP [dm6]	A	G	4.414e^-4	0.942	INTERGENIC
X	21048222	X_21048222_SNP [dm3] X_21177195_SNP [dm6]	T	C	4.416e^-4	0.942	INTERGENIC
X	5340406	X_5340406_SNP [dm3] X_5446373_SNP [dm6]	A	G	4.428e^-4	0.942	UPSTREAM SPR INTERGENIC
X	21047700	X_21047700_SNP [dm3] X_21176673_SNP [dm6]	G	A	4.436e^-4	0.942	INTERGENIC
3R	7537959	3R_7537959_SNP [dm3] 3R_11712237_SNP [dm6]	G	A	4.446e^-4	0.942	SYNONYMOUS_CODING CG14720	TF binding site mE1_TFBS_cad
3R	24994195	3R_24994195_INS [dm3] 3R_29168473_INS [dm6]	C	CAATC	4.454e^-4	0.942	INTRON CG11898
3R	25545852	3R_25545852_SNP [dm3] 3R_29720130_SNP [dm6]	T	A	4.460e^-4	0.942	INTRON CG15506
3R	2936438	3R_2936438_SNP [dm3] 3R_7110716_SNP [dm6]	T	G	4.461e^-4	0.942	INTRON Alh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	2774822	X_2774822_SNP [dm3] X_2880789_SNP [dm6]	G	A	4.474e^-4	0.942	INTRON kirre
3R	19828903	3R_19828903_SNP [dm3] 3R_24003181_SNP [dm6]	A	T	4.481e^-4	0.942	INTRON KrT95D
3R	10548444	3R_10548444_SNP [dm3] 3R_14722722_SNP [dm6]	C	T	4.489e^-4	0.942	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2758442	X_2758442_SNP [dm3] X_2864409_SNP [dm6]	C	T	4.495e^-4	0.942	INTRON kirre
X	12385662	X_12385662_SNP [dm3] X_12491629_SNP [dm6]	T	A	4.502e^-4	0.942	NON_SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
2L	19428831	2L_19428831_SNP [dm3] 2L_19428831_SNP [dm6]	G	C	4.505e^-4	0.942	NON_SYNONYMOUS_CODING CG16771 INTRON CG13085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22721243	3R_22721243_SNP [dm3] 3R_26895521_SNP [dm6]	T	A	4.507e^-4	0.942	INTRON T48	regulatory region REDfly_CRMs
3L	11699781	3L_11699781_SNP [dm3] 3L_11706681_SNP [dm6]	C	T	4.517e^-4	0.942	INTRON CG11658
3L	3624220	3L_3624220_SNP [dm3] 3L_3624220_SNP [dm6]	C	T	4.518e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18067459	3L_18067459_SNP [dm3] 3L_18074359_SNP [dm6]	T	G	4.519e^-4	0.942	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3L	6652380	3L_6652380_DEL [dm3] 3L_6659280_DEL [dm6]	TCGC	T	4.519e^-4	0.942	INTERGENIC
2R	11227775	2R_11227775_SNP [dm3] 2R_15340270_SNP [dm6]	C	T	4.520e^-4	0.942	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	13716099	3R_13716099_INS [dm3] 3R_17890377_INS [dm6]	T	TTAA	4.521e^-4	0.942	INTRON Rim
3R	17807059	3R_17807059_SNP [dm3] 3R_21981337_SNP [dm6]	A	C	4.525e^-4	0.942	INTRON Eip93F
2R	16503973	2R_16503973_INS [dm3] 2R_20616468_INS [dm6]	A	AA	4.546e^-4	0.942	INTRON Hil
2L	13633678	2L_13633678_SNP [dm3] 2L_13633678_SNP [dm6]	G	T	4.556e^-4	0.942	UPSTREAM CR43410 INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11132750	3R_11132750_SNP [dm3] 3R_15307028_SNP [dm6]	C	T	4.561e^-4	0.942	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1	TF binding site mE1_TFBS_HSA
3R	23935640	3R_23935640_SNP [dm3] 3R_28109918_SNP [dm6]	C	T	4.563e^-4	0.942	INTERGENIC
3R	13577577	3R_13577577_SNP [dm3] 3R_17751855_SNP [dm6]	T	C	4.565e^-4	0.942	UTR_3_PRIME TyrR
3R	11191117	3R_11191117_SNP [dm3] 3R_15365395_SNP [dm6]	G	A	4.568e^-4	0.942	INTRON CG34404	TF binding site mE1_TFBS_chinmo
3L	11811204	3L_11811204_SNP [dm3] 3L_11818104_SNP [dm6]	G	A	4.574e^-4	0.942	SYNONYMOUS_CODING CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3124866	2L_3124866_SNP [dm3] 2L_3124866_SNP [dm6]	C	T	4.575e^-4	0.942	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10928249	3R_10928249_SNP [dm3] 3R_15102527_SNP [dm6]	A	G	4.577e^-4	0.942	INTRON CG42788
2R	12410673	2R_12410673_SNP [dm3] 2R_16523168_SNP [dm6]	C	T	4.579e^-4	0.942	INTRON Sema-2a
2L	17641099	2L_17641099_SNP [dm3] 2L_17641099_SNP [dm6]	C	G	4.585e^-4	0.942	INTERGENIC
3L	721725	3L_721725_SNP [dm3] 3L_721725_SNP [dm6]	T	A	4.613e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11819324	3R_11819324_SNP [dm3] 3R_15993602_SNP [dm6]	T	A	4.615e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819325	3R_11819325_DEL [dm3] 3R_15993603_DEL [dm6]	ATGTGTATTTAAT...	A	4.615e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819341	3R_11819341_SNP [dm3] 3R_15993619_SNP [dm6]	T	A	4.615e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819343	3R_11819343_DEL [dm3] 3R_15993621_DEL [dm6]	TTTA	T	4.615e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	10782951	3R_10782951_SNP [dm3] 3R_14957229_SNP [dm6]	A	C	4.628e^-4	0.942	INTERGENIC
3R	22847467	3R_22847467_SNP [dm3] 3R_27021745_SNP [dm6]	C	T	4.628e^-4	0.942	UPSTREAM CG6283 DOWNSTREAM CG6277 INTRON RYa-R
3R	22217855	3R_22217855_SNP [dm3] 3R_26392133_SNP [dm6]	C	G	4.631e^-4	0.942	INTERGENIC
2L	8445850	2L_8445850_SNP [dm3] 2L_8445850_SNP [dm6]	A	T	4.636e^-4	0.942	DOWNSTREAM U26 & 1 other INTERGENIC
X	22145393	X_22145393_SNP [dm3] X_22743557_SNP [dm6]	G	T	4.640e^-4	0.942	INTRON CR44997
3L	9552281	3L_9552281_SNP [dm3] 3L_9559181_SNP [dm6]	G	T	4.642e^-4	0.942	INTRON CG42673
2R	11031785	2R_11031785_SNP [dm3] 2R_15144280_SNP [dm6]	G	A	4.643e^-4	0.942	UTR_3_PRIME chn DOWNSTREAM chn & 1 other
2L	9928636	2L_9928636_SNP [dm3] 2L_9928636_SNP [dm6]	T	A	4.644e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
3R	8926373	3R_8926373_SNP [dm3] 3R_13100651_SNP [dm6]	T	C	4.644e^-4	0.942	INTRON timeout
2L	8800831	2L_8800831_SNP [dm3] 2L_8800831_SNP [dm6]	A	G	4.650e^-4	0.942	INTERGENIC
3R	3882776	3R_3882776_SNP [dm3] 3R_8057054_SNP [dm6]	T	C	4.659e^-4	0.942	INTERGENIC
3R	21203268	3R_21203268_SNP [dm3] 3R_25377546_SNP [dm6]	C	A	4.670e^-4	0.942	INTRON Fur1
3R	21203271	3R_21203271_SNP [dm3] 3R_25377549_SNP [dm6]	A	G	4.670e^-4	0.942	INTRON Fur1
3R	11574928	3R_11574928_SNP [dm3] 3R_15749206_SNP [dm6]	C	T	4.683e^-4	0.942	INTERGENIC
3L	519496	3L_519496_SNP [dm3] 3L_519496_SNP [dm6]	G	T	4.685e^-4	0.942	INTRON klar
3R	2320341	3R_2320341_SNP [dm3] 3R_6494619_SNP [dm6]	A	G	4.687e^-4	0.942	UTR_3_PRIME CG15186	TF binding site mE1_TFBS_kn
3R	10158531	3R_10158531_SNP [dm3] 3R_14332809_SNP [dm6]	C	T	4.691e^-4	0.942	INTRON NK7.1
3R	11380781	3R_11380781_SNP [dm3] 3R_15555059_SNP [dm6]	C	G	4.693e^-4	0.942	INTERGENIC
2R	17973406	2R_17973406_SNP [dm3] 2R_22085901_SNP [dm6]	T	C	4.698e^-4	0.942	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
3R	26373042	3R_26373042_SNP [dm3] 3R_30547320_SNP [dm6]	G	A	4.705e^-4	0.942	INTRON tmod
3R	17694231	3R_17694231_SNP [dm3] 3R_21868509_SNP [dm6]	A	G	4.707e^-4	0.942	SYNONYMOUS_CODING Cby UPSTREAM CG6569 DOWNSTREAM CG31174
3R	7764084	3R_7764084_SNP [dm3] 3R_11938362_SNP [dm6]	C	A	4.710e^-4	0.942	INTRON Cad87A
3L	22656991	3L_22656991_SNP [dm3] 3L_22663891_SNP [dm6]	A	C	4.716e^-4	0.942	INTERGENIC
2R	17287190	2R_17287190_SNP [dm3] 2R_21399685_SNP [dm6]	C	G	4.730e^-4	0.942	INTRON Sdc
2R	17287497	2R_17287497_SNP [dm3] 2R_21399992_SNP [dm6]	T	C	4.730e^-4	0.942	INTRON Sdc
3R	25588511	3R_25588511_SNP [dm3] 3R_29762789_SNP [dm6]	G	T	4.735e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4410164	X_4410164_SNP [dm3] X_4516131_SNP [dm6]	A	C	4.757e^-4	0.942	INTRON CR32773
3L	3780379	3L_3780379_SNP [dm3] 3L_3780379_SNP [dm6]	T	A	4.762e^-4	0.942	INTRON CG32264
3R	919677	3R_919677_SNP [dm3] 3R_5093955_SNP [dm6]	C	A	4.767e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21047034	X_21047034_DEL [dm3] X_21176007_DEL [dm6]	CAAATTTTAGTGAGATTCCA...	G	4.771e^-4	0.942	INTERGENIC
2R	14819532	2R_14819532_SNP [dm3] 2R_18932027_SNP [dm6]	C	T	4.774e^-4	0.942	INTRON sano	TF binding site mE1_TFBS_inv
3R	23919047	3R_23919047_SNP [dm3] 3R_28093325_SNP [dm6]	A	C	4.776e^-4	0.942	INTERGENIC
2R	20824163	2R_20824163_SNP [dm3] 2R_24936640_SNP [dm6]	A	G	4.783e^-4	0.942	UPSTREAM CG30427 INTRON CG30427
3L	9420460	3L_9420460_SNP [dm3] 3L_9427360_SNP [dm6]	G	A	4.809e^-4	0.942	UPSTREAM CG3967 INTRON Shc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12362748	2R_12362748_INS [dm3] 2R_16475243_INS [dm6]	G	ATA	4.829e^-4	0.942	INTERGENIC
2L	1550605	2L_1550605_SNP [dm3] 2L_1550605_SNP [dm6]	A	C	4.836e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10538832	3L_10538832_SNP [dm3] 3L_10545732_SNP [dm6]	T	A	4.838e^-4	0.942	INTRON A2bp1
2L	11208830	2L_11208830_SNP [dm3] 2L_11208830_SNP [dm6]	A	G	4.845e^-4	0.942	INTERGENIC
3L	9552264	3L_9552264_SNP [dm3] 3L_9559164_SNP [dm6]	G	A	4.845e^-4	0.942	INTRON CG42673
3L	9552322	3L_9552322_SNP [dm3] 3L_9559222_SNP [dm6]	A	T	4.845e^-4	0.942	INTRON CG42673
3L	3024123	3L_3024123_SNP [dm3] 3L_3024123_SNP [dm6]	C	A	4.846e^-4	0.942	DOWNSTREAM aly INTERGENIC
2R	9201730	2R_9201730_SNP [dm3] 2R_13314225_SNP [dm6]	T	C	4.847e^-4	0.942	INTERGENIC
3R	15794920	3R_15794920_SNP [dm3] 3R_19969198_SNP [dm6]	A	C	4.854e^-4	0.942	INTRON Hs6st
3L	23602513	3L_23602513_SNP [dm3] 3L_23609413_SNP [dm6]	G	C	4.857e^-4	0.942	INTRON AGO3	transposable element FlyBase
2L	19337653	2L_19337653_SNP [dm3] 2L_19337653_SNP [dm6]	G	T	4.868e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11812653	3L_11812653_SNP [dm3] 3L_11819553_SNP [dm6]	A	C	4.870e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22900816	3R_22900816_SNP [dm3] 3R_27075094_SNP [dm6]	A	T	4.870e^-4	0.942	UPSTREAM CG14257 INTERGENIC
3R	11408968	3R_11408968_SNP [dm3] 3R_15583246_SNP [dm6]	A	G	4.877e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	12167211	2R_12167211_SNP [dm3] 2R_16279706_SNP [dm6]	T	A	4.896e^-4	0.942	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2330646	3R_2330646_SNP [dm3] 3R_6504924_SNP [dm6]	C	T	4.899e^-4	0.942	INTERGENIC
3L	16759880	3L_16759880_MNP [dm3] 3L_16766780_MNP [dm6]	TGA	AAT	4.922e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19388301	2L_19388301_DEL [dm3] 2L_19388301_DEL [dm6]	GGAGCCG	G	4.929e^-4	0.942	CODON_DELETION CG17549
3R	14672986	3R_14672986_SNP [dm3] 3R_18847264_SNP [dm6]	G	T	4.932e^-4	0.942	INTRON CG18208
3L	2770025	3L_2770025_SNP [dm3] 3L_2770025_SNP [dm6]	T	A	4.940e^-4	0.942	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7860024	2L_7860024_SNP [dm3] 2L_7860024_SNP [dm6]	T	C	4.941e^-4	0.942	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
2L	9588922	2L_9588922_SNP [dm3] 2L_9588922_SNP [dm6]	T	A	4.951e^-4	0.942	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	14092972	3R_14092972_SNP [dm3] 3R_18267250_SNP [dm6]	T	C	4.954e^-4	0.942	UPSTREAM CG18599 INTERGENIC
2R	16503875	2R_16503875_SNP [dm3] 2R_20616370_SNP [dm6]	T	G	4.957e^-4	0.942	INTRON Hil
3L	3752191	3L_3752191_SNP [dm3] 3L_3752191_SNP [dm6]	A	C	4.968e^-4	0.942	INTRON CG32264
3R	2409708	3R_2409708_SNP [dm3] 3R_6583986_SNP [dm6]	G	C	4.978e^-4	0.942	INTRON dpr11
3R	24082226	3R_24082226_SNP [dm3] 3R_28256504_SNP [dm6]	A	G	4.980e^-4	0.942	INTERGENIC
2R	20367380	2R_20367380_SNP [dm3] 2R_24479857_SNP [dm6]	C	A	4.985e^-4	0.942	INTRON CG13579
2R	20367384	2R_20367384_SNP [dm3] 2R_24479861_SNP [dm6]	T	A	4.985e^-4	0.942	INTRON CG13579
2L	3382917	2L_3382917_SNP [dm3] 2L_3382917_SNP [dm6]	A	C	4.986e^-4	0.942	INTERGENIC
3R	2547486	3R_2547486_SNP [dm3] 3R_6721764_SNP [dm6]	C	G	4.993e^-4	0.942	INTRON pb	regulatory region REDfly_CRMs
3L	15482001	3L_15482001_SNP [dm3] 3L_15488901_SNP [dm6]	T	A	5.002e^-4	0.942	INTERGENIC
3R	11418777	3R_11418777_SNP [dm3] 3R_15593055_SNP [dm6]	A	G	5.003e^-4	0.942	INTERGENIC
3L	9552285	3L_9552285_SNP [dm3] 3L_9559185_SNP [dm6]	T	C	5.006e^-4	0.942	INTRON CG42673
3L	19384849	3L_19384849_SNP [dm3] 3L_19391749_SNP [dm6]	C	T	5.007e^-4	0.942	INTRON CG32206
3R	18640301	3R_18640301_SNP [dm3] 3R_22814579_SNP [dm6]	A	T	5.018e^-4	0.942	UTR_3_PRIME CG13840
3R	18640315	3R_18640315_SNP [dm3] 3R_22814593_SNP [dm6]	G	T	5.018e^-4	0.942	UTR_3_PRIME CG13840
3R	11869687	3R_11869687_SNP [dm3] 3R_16043965_SNP [dm6]	T	C	5.018e^-4	0.942	NON_SYNONYMOUS_CODING CG10264 SPLICE_SITE_REGION CG10264 DOWNSTREAM CG10407
3L	22656990	3L_22656990_SNP [dm3] 3L_22663890_SNP [dm6]	G	A	5.019e^-4	0.942	INTERGENIC
3R	11456750	3R_11456750_SNP [dm3] 3R_15631028_SNP [dm6]	C	A	5.023e^-4	0.942	INTERGENIC
3R	25314665	3R_25314665_SNP [dm3] 3R_29488943_SNP [dm6]	C	A	5.031e^-4	0.942	SYNONYMOUS_CODING CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16272043	3L_16272043_SNP [dm3] 3L_16278943_SNP [dm6]	G	A	5.034e^-4	0.942	SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
3L	16272046	3L_16272046_SNP [dm3] 3L_16278946_SNP [dm6]	A	G	5.034e^-4	0.942	SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
2L	19345004	2L_19345004_SNP [dm3] 2L_19345004_SNP [dm6]	C	A	5.039e^-4	0.942	INTRON dnt
2L	19345005	2L_19345005_SNP [dm3] 2L_19345005_SNP [dm6]	C	A	5.039e^-4	0.942	INTRON dnt
2R	17463951	2R_17463951_SNP [dm3] 2R_21576446_SNP [dm6]	C	T	5.042e^-4	0.942	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8666269	3L_8666269_SNP [dm3] 3L_8673169_SNP [dm6]	A	C	5.042e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9961503	3R_9961503_SNP [dm3] 3R_14135781_SNP [dm6]	T	A	5.049e^-4	0.942	INTERGENIC
3R	11434566	3R_11434566_SNP [dm3] 3R_15608844_SNP [dm6]	A	T	5.049e^-4	0.942	INTERGENIC
3R	11434591	3R_11434591_SNP [dm3] 3R_15608869_SNP [dm6]	G	A	5.049e^-4	0.942	INTERGENIC
2L	15360257	2L_15360257_SNP [dm3] 2L_15360257_SNP [dm6]	T	G	5.058e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
X	17584434	X_17584434_DEL [dm3] X_17690401_DEL [dm6]	AA	A	5.060e^-4	0.942	INTRON chas
X	16875326	X_16875326_DEL [dm3] X_16981293_DEL [dm6]	TAT	T	5.064e^-4	0.942	INTRON CG45002
3R	13669614	3R_13669614_SNP [dm3] 3R_17843892_SNP [dm6]	C	G	5.071e^-4	0.942	INTRON tinc
2L	8438087	2L_8438087_SNP [dm3] 2L_8438087_SNP [dm6]	G	T	5.072e^-4	0.942	UPSTREAM mus201 & 1 other DOWNSTREAM Chrac-14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	14672975	3R_14672975_SNP [dm3] 3R_18847253_SNP [dm6]	T	A	5.082e^-4	0.942	INTRON CG18208
3R	14672976	3R_14672976_SNP [dm3] 3R_18847254_SNP [dm6]	T	A	5.082e^-4	0.942	INTRON CG18208
2R	19311562	2R_19311562_DEL [dm3] 2R_23424039_DEL [dm6]	GACCTGAA	TTT	5.084e^-4	0.942	INTRON CG9815
3L	2042615	3L_2042615_SNP [dm3] 3L_2042615_SNP [dm6]	A	G	5.091e^-4	0.942	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	2043216	3L_2043216_SNP [dm3] 3L_2043216_SNP [dm6]	T	C	5.091e^-4	0.942	INTRON sls	TF binding site mE1_TFBS_cad
2L	958411	2L_958411_SNP [dm3] 2L_958411_SNP [dm6]	G	C	5.093e^-4	0.942	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3003660	3R_3003660_SNP [dm3] 3R_7177938_SNP [dm6]	T	C	5.097e^-4	0.942	INTRON sas
3R	3036162	3R_3036162_SNP [dm3] 3R_7210440_SNP [dm6]	C	T	5.097e^-4	0.942	INTERGENIC
2R	18553447	2R_18553447_SNP [dm3] 2R_22665942_SNP [dm6]	C	T	5.101e^-4	0.942	NON_SYNONYMOUS_CODING CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2L	19357448	2L_19357448_SNP [dm3] 2L_19357448_SNP [dm6]	A	T	5.102e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	23931033	3R_23931033_SNP [dm3] 3R_28105311_SNP [dm6]	G	A	5.105e^-4	0.942	INTERGENIC
2R	16481072	2R_16481072_SNP [dm3] 2R_20593567_SNP [dm6]	T	C	5.107e^-4	0.942	UPSTREAM bl INTRON bl
3L	8696346	3L_8696346_SNP [dm3] 3L_8703246_SNP [dm6]	C	A	5.112e^-4	0.942	INTERGENIC
3R	21908427	3R_21908427_SNP [dm3] 3R_26082705_SNP [dm6]	A	G	5.112e^-4	0.942	INTRON dys	TF binding site mE1_TFBS_cad
X	5592825	X_5592825_INS [dm3] X_5698792_INS [dm6]	G	GTG	5.112e^-4	0.942	UTR_5_PRIME CG4096 UPSTREAM CG4096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20968038	X_20968038_SNP [dm3] X_21097011_SNP [dm6]	A	G	5.113e^-4	0.942	INTRON stg1 & 2 others
3R	15568180	3R_15568180_SNP [dm3] 3R_19742458_SNP [dm6]	G	C	5.120e^-4	0.942	INTRON GluClalpha
3R	15568182	3R_15568182_SNP [dm3] 3R_19742460_SNP [dm6]	G	A	5.120e^-4	0.942	INTRON GluClalpha
3L	6320367	3L_6320367_SNP [dm3] 3L_6327267_SNP [dm6]	G	A	5.130e^-4	0.942	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320378	3L_6320378_SNP [dm3] 3L_6327278_SNP [dm6]	C	A	5.130e^-4	0.942	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
X	12806436	X_12806436_SNP [dm3] X_12912403_SNP [dm6]	C	A	5.139e^-4	0.942	UPSTREAM CR45625 DOWNSTREAM CG4645 INTERGENIC
3R	26678407	3R_26678407_SNP [dm3] 3R_30852685_SNP [dm6]	A	G	5.139e^-4	0.942	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6198723	X_6198723_SNP [dm3] X_6304690_SNP [dm6]	A	T	5.145e^-4	0.942	INTRON CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9913721	3R_9913721_SNP [dm3] 3R_14087999_SNP [dm6]	A	C	5.145e^-4	0.942	DOWNSTREAM foxo INTERGENIC
2R	12362758	2R_12362758_SNP [dm3] 2R_16475253_SNP [dm6]	G	A	5.147e^-4	0.942	INTERGENIC
2R	12362766	2R_12362766_SNP [dm3] 2R_16475261_SNP [dm6]	C	T	5.147e^-4	0.942	INTERGENIC
2R	12362769	2R_12362769_SNP [dm3] 2R_16475264_SNP [dm6]	T	A	5.147e^-4	0.942	INTERGENIC
2R	11036771	2R_11036771_SNP [dm3] 2R_15149266_SNP [dm6]	G	T	5.149e^-4	0.942	UTR_3_PRIME CG7544
2R	12254088	2R_12254088_SNP [dm3] 2R_16366583_SNP [dm6]	T	A	5.152e^-4	0.942	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	5.161e^-4	0.942	INTRON CG13579
2R	15555788	2R_15555788_SNP [dm3] 2R_19668283_SNP [dm6]	T	G	5.168e^-4	0.942	UTR_5_PRIME hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15556292	2R_15556292_SNP [dm3] 2R_19668787_SNP [dm6]	T	A	5.168e^-4	0.942	INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	23932355	3R_23932355_INS [dm3] 3R_28106633_INS [dm6]	T	TAT	5.175e^-4	0.942	INTERGENIC
2R	7645094	2R_7645094_SNP [dm3] 2R_11757589_SNP [dm6]	A	C	5.188e^-4	0.942	UTR_5_PRIME ths
3R	20377117	3R_20377117_SNP [dm3] 3R_24551395_SNP [dm6]	T	C	5.191e^-4	0.942	SYNONYMOUS_CODING Esyt2 UTR_5_PRIME Esyt2	TF binding site mE1_TFBS_cad
X	21436397	X_21436397_SNP [dm3] X_21565370_SNP [dm6]	C	T	5.193e^-4	0.942	INTERGENIC
3L	2961327	3L_2961327_SNP [dm3] 3L_2961327_SNP [dm6]	A	T	5.200e^-4	0.942	UPSTREAM Or63a & 1 other INTERGENIC
X	5789781	X_5789781_SNP [dm3] X_5895748_SNP [dm6]	C	A	5.224e^-4	0.942	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	19364017	2L_19364017_SNP [dm3] 2L_19364017_SNP [dm6]	G	A	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364021	2L_19364021_SNP [dm3] 2L_19364021_SNP [dm6]	T	A	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364030	2L_19364030_SNP [dm3] 2L_19364030_SNP [dm6]	T	A	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364033	2L_19364033_SNP [dm3] 2L_19364033_SNP [dm6]	T	G	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364034	2L_19364034_SNP [dm3] 2L_19364034_SNP [dm6]	G	A	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364036	2L_19364036_SNP [dm3] 2L_19364036_SNP [dm6]	A	T	5.235e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11434597	3R_11434597_SNP [dm3] 3R_15608875_SNP [dm6]	A	T	5.236e^-4	0.942	INTERGENIC
X	6732107	X_6732107_SNP [dm3] X_6838074_SNP [dm6]	A	C	5.239e^-4	0.942	UTR_3_PRIME nonC DOWNSTREAM CG14435 & 1 other
2L	3355028	2L_3355028_SNP [dm3] 2L_3355028_SNP [dm6]	A	G	5.244e^-4	0.942	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355037	2L_3355037_SNP [dm3] 2L_3355037_SNP [dm6]	C	T	5.244e^-4	0.942	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355038	2L_3355038_SNP [dm3] 2L_3355038_SNP [dm6]	A	T	5.244e^-4	0.942	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355073	2L_3355073_SNP [dm3] 2L_3355073_SNP [dm6]	G	T	5.244e^-4	0.942	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4241816	2L_4241816_SNP [dm3] 2L_4241816_SNP [dm6]	T	C	5.250e^-4	0.942	UPSTREAM CR45720 DOWNSTREAM CR44058 INTRON CR44058
2L	14732824	2L_14732824_SNP [dm3] 2L_14732824_SNP [dm6]	C	T	5.251e^-4	0.942	EXON CR44857
2R	15078644	2R_15078644_SNP [dm3] 2R_19191139_SNP [dm6]	T	C	5.254e^-4	0.942	INTRON hppy
3L	11832992	3L_11832992_SNP [dm3] 3L_11839892_SNP [dm6]	T	C	5.258e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18919855	2R_18919855_SNP [dm3] 2R_23032332_SNP [dm6]	A	G	5.260e^-4	0.942	INTRON twi & 1 other
3R	15795113	3R_15795113_SNP [dm3] 3R_19969391_SNP [dm6]	T	A	5.277e^-4	0.942	INTRON Hs6st
X	17125779	X_17125779_SNP [dm3] X_17231746_SNP [dm6]	G	C	5.281e^-4	0.942	UPSTREAM CG10597 INTERGENIC
3L	6550365	3L_6550365_SNP [dm3] 3L_6557265_SNP [dm6]	C	A	5.284e^-4	0.942	INTRON CG18769
3R	19037542	3R_19037542_SNP [dm3] 3R_23211820_SNP [dm6]	A	G	5.289e^-4	0.942	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	4143482	2R_4143482_SNP [dm3] 2R_8255977_SNP [dm6]	C	G	5.295e^-4	0.942	INTRON CG14760	TF binding site mE1_TFBS_cad
3L	23683710	3L_23683710_SNP [dm3] 3L_23690610_SNP [dm6]	C	T	5.296e^-4	0.942	DOWNSTREAM CR45174 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	18729672	3R_18729672_SNP [dm3] 3R_22903950_SNP [dm6]	C	T	5.308e^-4	0.942	INTRON klg
3L	3762396	3L_3762396_SNP [dm3] 3L_3762396_SNP [dm6]	G	A	5.310e^-4	0.942	INTRON CG32264
2R	8347132	2R_8347132_SNP [dm3] 2R_12459627_SNP [dm6]	A	C	5.313e^-4	0.942	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12465729	2L_12465729_DEL [dm3] 2L_12465729_DEL [dm6]	ATATT	A	5.320e^-4	0.942	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12465736	2L_12465736_SNP [dm3] 2L_12465736_SNP [dm6]	T	A	5.320e^-4	0.942	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	15877802	3L_15877802_SNP [dm3] 3L_15884702_SNP [dm6]	T	A	5.323e^-4	0.942	INTRON pHCl EXON CR44050
3R	25837569	3R_25837569_SNP [dm3] 3R_30011847_SNP [dm6]	A	G	5.332e^-4	0.942	SYNONYMOUS_CODING CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17287477	2R_17287477_SNP [dm3] 2R_21399972_SNP [dm6]	G	A	5.336e^-4	0.942	INTRON Sdc
3R	11157378	3R_11157378_SNP [dm3] 3R_15331656_SNP [dm6]	T	C	5.353e^-4	0.942	UTR_3_PRIME FK506-bp1 DOWNSTREAM mRpL9	TF binding site mE1_TFBS_sens
3R	11833999	3R_11833999_SNP [dm3] 3R_16008277_SNP [dm6]	C	A	5.372e^-4	0.942	UPSTREAM CR42839 & 1 other INTERGENIC
3R	9635705	3R_9635705_SNP [dm3] 3R_13809983_SNP [dm6]	C	T	5.378e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12722414	3R_12722414_SNP [dm3] 3R_16896692_SNP [dm6]	A	T	5.381e^-4	0.942	UPSTREAM iab-8 INTRON iab-8 & 1 other	TF binding site mE1_TFBS_cad
X	21047303	X_21047303_SNP [dm3] X_21176276_SNP [dm6]	T	G	5.383e^-4	0.942	INTERGENIC
X	18190300	X_18190300_SNP [dm3] X_18296267_SNP [dm6]	G	A	5.388e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9684652	3R_9684652_SNP [dm3] 3R_13858930_SNP [dm6]	T	C	5.390e^-4	0.942	INTERGENIC
2L	1282283	2L_1282283_SNP [dm3] 2L_1282283_SNP [dm6]	G	A	5.401e^-4	0.942	INTRON robo3
2L	1282286	2L_1282286_SNP [dm3] 2L_1282286_SNP [dm6]	G	C	5.401e^-4	0.942	INTRON robo3
3L	23588391	3L_23588391_SNP [dm3] 3L_23595291_SNP [dm6]	C	T	5.414e^-4	0.942	INTRON AGO3	transposable element FlyBase
2R	13293750	2R_13293750_SNP [dm3] 2R_17406245_SNP [dm6]	G	C	5.426e^-4	0.942	SYNONYMOUS_CODING CG6568	TF binding site mE1_TFBS_sens
2R	13293848	2R_13293848_SNP [dm3] 2R_17406343_SNP [dm6]	A	G	5.426e^-4	0.942	SYNONYMOUS_CODING CG6568	TF binding site mE1_TFBS_sens
3R	13965824	3R_13965824_SNP [dm3] 3R_18140102_SNP [dm6]	G	A	5.433e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11412064	3R_11412064_SNP [dm3] 3R_15586342_SNP [dm6]	T	C	5.439e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9634626	3L_9634626_SNP [dm3] 3L_9641526_SNP [dm6]	T	C	5.447e^-4	0.942	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20259076	3L_20259076_SNP [dm3] 3L_20265976_SNP [dm6]	T	A	5.465e^-4	0.942	NON_SYNONYMOUS_CODING CG32228 DOWNSTREAM rdgC EXON CR43876
X	10808008	X_10808008_SNP [dm3] X_10913975_SNP [dm6]	A	G	5.475e^-4	0.942	INTRON CG43901
3L	10102482	3L_10102482_SNP [dm3] 3L_10109382_SNP [dm6]	C	T	5.477e^-4	0.942	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	16776036	X_16776036_SNP [dm3] X_16882003_SNP [dm6]	T	C	5.478e^-4	0.942	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	16776042	X_16776042_SNP [dm3] X_16882009_SNP [dm6]	T	C	5.478e^-4	0.942	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25632291	3R_25632291_SNP [dm3] 3R_29806569_SNP [dm6]	T	C	5.493e^-4	0.942	NON_SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	3787717	3L_3787717_SNP [dm3] 3L_3787717_SNP [dm6]	A	T	5.508e^-4	0.942	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3787728	3L_3787728_SNP [dm3] 3L_3787728_SNP [dm6]	A	G	5.508e^-4	0.942	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7814708	2L_7814708_SNP [dm3] 2L_7814708_SNP [dm6]	C	T	5.545e^-4	0.942	INTRON LanB1
2R	16458827	2R_16458827_SNP [dm3] 2R_20571322_SNP [dm6]	G	C	5.575e^-4	0.942	INTRON qsm
2R	10588681	2R_10588681_SNP [dm3] 2R_14701176_SNP [dm6]	G	A	5.578e^-4	0.942	INTRON mspo
3L	18023756	3L_18023756_SNP [dm3] 3L_18030656_SNP [dm6]	C	T	5.581e^-4	0.942	INTRON Eip75B
3R	16763316	3R_16763316_SNP [dm3] 3R_20937594_SNP [dm6]	G	C	5.581e^-4	0.942	INTRON CG31191
2L	3387619	2L_3387619_SNP [dm3] 2L_3387619_SNP [dm6]	A	T	5.588e^-4	0.942	UPSTREAM CR45301 DOWNSTREAM CG42460 INTRON Sfp23F
3R	26687183	3R_26687183_SNP [dm3] 3R_30861461_SNP [dm6]	G	A	5.592e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	16116492	3R_16116492_SNP [dm3] 3R_20290770_SNP [dm6]	T	C	5.598e^-4	0.942	INTRON cic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10040195	3R_10040195_SNP [dm3] 3R_14214473_SNP [dm6]	A	G	5.599e^-4	0.942	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
3R	20224047	3R_20224047_SNP [dm3] 3R_24398325_SNP [dm6]	A	T	5.609e^-4	0.942	UTR_3_PRIME nAChRalpha1
3R	17659365	3R_17659365_SNP [dm3] 3R_21833643_SNP [dm6]	G	A	5.612e^-4	0.942	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
2L	15481854	2L_15481854_SNP [dm3] 2L_15481854_SNP [dm6]	G	A	5.617e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15481868	2L_15481868_SNP [dm3] 2L_15481868_SNP [dm6]	T	C	5.617e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11111137	3R_11111137_SNP [dm3] 3R_15285415_SNP [dm6]	C	T	5.624e^-4	0.942	INTRON Tm1
3R	25840291	3R_25840291_INS [dm3] 3R_30014569_INS [dm6]	A	ATGTA	5.629e^-4	0.942	DOWNSTREAM Mgat2 INTRON CG7920	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2642900	3L_2642900_SNP [dm3] 3L_2642900_SNP [dm6]	G	C	5.630e^-4	0.942	DOWNSTREAM MEP-1 & 1 other INTRON CG14949	TF binding site mE1_TFBS_cad
3L	16759894	3L_16759894_SNP [dm3] 3L_16766794_SNP [dm6]	G	C	5.648e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759898	3L_16759898_INS [dm3] 3L_16766798_INS [dm6]	T	TTTATTGAAA	5.648e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11440487	3R_11440487_SNP [dm3] 3R_15614765_SNP [dm6]	A	G	5.650e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3L	19000629	3L_19000629_SNP [dm3] 3L_19007529_SNP [dm6]	G	A	5.654e^-4	0.942	SYNONYMOUS_CODING nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2313289	3R_2313289_SNP [dm3] 3R_6487567_SNP [dm6]	T	G	5.654e^-4	0.942	INTRON CG15186
3R	2313319	3R_2313319_SNP [dm3] 3R_6487597_SNP [dm6]	G	A	5.654e^-4	0.942	INTRON CG15186
3L	56254	3L_56254_SNP [dm3] 3L_56254_SNP [dm6]	A	T	5.664e^-4	0.942	INTERGENIC
3R	9659759	3R_9659759_SNP [dm3] 3R_13834037_SNP [dm6]	A	C	5.671e^-4	0.942	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
2L	8436213	2L_8436213_SNP [dm3] 2L_8436213_SNP [dm6]	G	A	5.674e^-4	0.942	SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_sens
2L	13935676	2L_13935676_SNP [dm3] 2L_13935676_SNP [dm6]	G	C	5.675e^-4	0.942	UPSTREAM CG16885 INTRON Ance-3
3R	913694	3R_913694_SNP [dm3] 3R_5087972_SNP [dm6]	T	G	5.686e^-4	0.942	UPSTREAM corto INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26150756	3R_26150756_DEL [dm3] 3R_30325034_DEL [dm6]	CGTGGTGGGGC...	C	5.689e^-4	0.942	INTRON hdc
3R	11413413	3R_11413413_SNP [dm3] 3R_15587691_SNP [dm6]	A	T	5.693e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14672973	3R_14672973_SNP [dm3] 3R_18847251_SNP [dm6]	A	T	5.700e^-4	0.942	INTRON CG18208
2L	16790004	2L_16790004_SNP [dm3] 2L_16790004_SNP [dm6]	C	A	5.704e^-4	0.942	INTRON Cyt-b5-r
3R	3513702	3R_3513702_SNP [dm3] 3R_7687980_SNP [dm6]	A	T	5.708e^-4	0.942	INTRON Nlg1
X	19106459	X_19106459_SNP [dm3] X_19212426_SNP [dm6]	T	A	5.710e^-4	0.942	UPSTREAM CG14195 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	9825245	3R_9825245_SNP [dm3] 3R_13999523_SNP [dm6]	C	G	5.710e^-4	0.942	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4210707	2L_4210707_SNP [dm3] 2L_4210707_SNP [dm6]	G	A	5.723e^-4	0.942	INTRON ft
3R	3471395	3R_3471395_SNP [dm3] 3R_7645673_SNP [dm6]	T	A	5.729e^-4	0.942	INTERGENIC
2R	14598521	2R_14598521_SNP [dm3] 2R_18711016_SNP [dm6]	G	C	5.729e^-4	0.942	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11311511	2R_11311511_SNP [dm3] 2R_15424006_SNP [dm6]	T	C	5.734e^-4	0.942	NON_SYNONYMOUS_CODING CG30472 UPSTREAM CG43729 INTRON CG43729
2R	3744154	2R_3744154_SNP [dm3] 2R_7856649_SNP [dm6]	T	C	5.739e^-4	0.942	INTRON Dgk
3R	26571216	3R_26571216_SNP [dm3] 3R_30745494_SNP [dm6]	T	G	5.741e^-4	0.942	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8157082	2R_8157082_SNP [dm3] 2R_12269577_SNP [dm6]	A	T	5.743e^-4	0.942	INTRON Cam
2R	13829906	2R_13829906_SNP [dm3] 2R_17942401_SNP [dm6]	G	T	5.743e^-4	0.942	INTERGENIC
2L	19392069	2L_19392069_SNP [dm3] 2L_19392069_SNP [dm6]	C	T	5.753e^-4	0.942	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20500675	2L_20500675_SNP [dm3] 2L_20500675_SNP [dm6]	C	G	5.759e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
X	21046501	X_21046501_SNP [dm3] X_21175474_SNP [dm6]	G	A	5.776e^-4	0.942	INTERGENIC
3L	8100096	3L_8100096_SNP [dm3] 3L_8106996_SNP [dm6]	A	T	5.796e^-4	0.942	INTRON Ect4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19364001	2L_19364001_SNP [dm3] 2L_19364001_SNP [dm6]	A	T	5.801e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26246771	3R_26246771_SNP [dm3] 3R_30421049_SNP [dm6]	T	A	5.805e^-4	0.942	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26246778	3R_26246778_SNP [dm3] 3R_30421056_SNP [dm6]	A	T	5.805e^-4	0.942	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10903985	2L_10903985_SNP [dm3] 2L_10903985_SNP [dm6]	T	C	5.814e^-4	0.942	UPSTREAM CR45724 INTERGENIC
3R	25629438	3R_25629438_SNP [dm3] 3R_29803716_SNP [dm6]	A	G	5.818e^-4	0.942	UPSTREAM CG7834 DOWNSTREAM ncd INTRON CG7789	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25632084	3R_25632084_SNP [dm3] 3R_29806362_SNP [dm6]	G	A	5.818e^-4	0.942	UPSTREAM ca INTRON ncd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25632398	3R_25632398_SNP [dm3] 3R_29806676_SNP [dm6]	C	T	5.818e^-4	0.942	UTR_5_PRIME ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	11507092	3R_11507092_SNP [dm3] 3R_15681370_SNP [dm6]	A	G	5.838e^-4	0.942	INTRON pxb
3L	1387495	3L_1387495_SNP [dm3] 3L_1387495_SNP [dm6]	A	G	5.852e^-4	0.942	DOWNSTREAM ru INTRON Ptp61F
2R	12132283	2R_12132283_SNP [dm3] 2R_16244778_SNP [dm6]	A	C	5.854e^-4	0.942	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20333465	2R_20333465_SNP [dm3] 2R_24445942_SNP [dm6]	C	T	5.855e^-4	0.942	SYNONYMOUS_CODING CG3483	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6737597	2R_6737597_SNP [dm3] 2R_10850092_SNP [dm6]	G	A	5.861e^-4	0.942	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	19598185	3R_19598185_SNP [dm3] 3R_23772463_SNP [dm6]	G	T	5.862e^-4	0.942	SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14336604	3L_14336604_SNP [dm3] 3L_14343504_SNP [dm6]	C	A	5.865e^-4	0.942	INTRON fz
3R	5155130	3R_5155130_SNP [dm3] 3R_9329408_SNP [dm6]	G	A	5.869e^-4	0.942	SYNONYMOUS_CODING CG12951 UPSTREAM CG8861	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2L	14802330	2L_14802330_SNP [dm3] 2L_14802330_SNP [dm6]	A	G	5.875e^-4	0.942	UPSTREAM CG33308 INTERGENIC
3R	11379202	3R_11379202_SNP [dm3] 3R_15553480_SNP [dm6]	C	T	5.886e^-4	0.942	UPSTREAM CG18516 INTERGENIC
3R	25389307	3R_25389307_SNP [dm3] 3R_29563585_SNP [dm6]	C	T	5.894e^-4	0.942	INTRON Dr	TF binding site mE1_TFBS_chinmo
2R	13177477	2R_13177477_SNP [dm3] 2R_17289972_SNP [dm6]	A	G	5.905e^-4	0.942	INTRON mbl
3R	21891679	3R_21891679_SNP [dm3] 3R_26065957_SNP [dm6]	T	A	5.907e^-4	0.942	INTERGENIC
3R	21891703	3R_21891703_SNP [dm3] 3R_26065981_SNP [dm6]	T	G	5.907e^-4	0.942	INTERGENIC
3R	11435899	3R_11435899_SNP [dm3] 3R_15610177_SNP [dm6]	G	A	5.907e^-4	0.942	INTERGENIC
2R	6572957	2R_6572957_SNP [dm3] 2R_10685452_SNP [dm6]	C	T	5.919e^-4	0.942	INTRON stan
2L	4457113	2L_4457113_DEL [dm3] 2L_4457113_DEL [dm6]	AG	C	5.924e^-4	0.942	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4457121	2L_4457121_SNP [dm3] 2L_4457121_SNP [dm6]	C	G	5.924e^-4	0.942	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21375084	X_21375084_SNP [dm3] X_21504057_SNP [dm6]	T	A	5.925e^-4	0.942	INTRON CR45082
3R	18104628	3R_18104628_SNP [dm3] 3R_22278906_SNP [dm6]	C	A	5.943e^-4	0.942	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3L	20370617	3L_20370617_SNP [dm3] 3L_20377517_SNP [dm6]	A	C	5.948e^-4	0.942	UPSTREAM RhoBTB INTRON RhoBTB
3L	9552263	3L_9552263_SNP [dm3] 3L_9559163_SNP [dm6]	T	C	5.950e^-4	0.942	INTRON CG42673
2R	12167204	2R_12167204_SNP [dm3] 2R_16279699_SNP [dm6]	G	A	5.963e^-4	0.942	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11478893	3R_11478893_SNP [dm3] 3R_15653171_SNP [dm6]	A	C	5.978e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	12915645	X_12915645_SNP [dm3] X_13021612_SNP [dm6]	T	C	5.984e^-4	0.942	UPSTREAM CG2209 INTRON rad
3R	17719812	3R_17719812_SNP [dm3] 3R_21894090_SNP [dm6]	G	A	5.989e^-4	0.942	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12970815	3L_12970815_SNP [dm3] 3L_12977715_SNP [dm6]	T	G	5.989e^-4	0.942	INTERGENIC
3L	2043137	3L_2043137_SNP [dm3] 3L_2043137_SNP [dm6]	A	G	5.997e^-4	0.942	INTRON sls	TF binding site mE1_TFBS_cad
X	11865059	X_11865059_SNP [dm3] X_11971026_SNP [dm6]	A	C	6.001e^-4	0.942	INTRON cac	TF binding site mE1_TFBS_sens
X	11353074	X_11353074_SNP [dm3] X_11459041_SNP [dm6]	T	C	6.002e^-4	0.942	UTR_3_PRIME HP5 UPSTREAM CG43155
3R	2971781	3R_2971781_SNP [dm3] 3R_7146059_SNP [dm6]	C	A	6.002e^-4	0.942	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	2971782	3R_2971782_SNP [dm3] 3R_7146060_SNP [dm6]	C	T	6.002e^-4	0.942	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	2971784	3R_2971784_SNP [dm3] 3R_7146062_SNP [dm6]	C	A	6.002e^-4	0.942	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	16992510	3R_16992510_SNP [dm3] 3R_21166788_SNP [dm6]	A	T	6.003e^-4	0.942	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
3R	16992563	3R_16992563_SNP [dm3] 3R_21166841_SNP [dm6]	T	C	6.003e^-4	0.942	INTRON SNF4Agamma & 1 other
3L	18682301	3L_18682301_SNP [dm3] 3L_18689201_SNP [dm6]	T	C	6.005e^-4	0.942	INTERGENIC
3L	18682342	3L_18682342_DEL [dm3] 3L_18689242_DEL [dm6]	AGTCA	A	6.005e^-4	0.942	INTERGENIC
2L	10721810	2L_10721810_SNP [dm3] 2L_10721810_SNP [dm6]	A	T	6.008e^-4	0.942	INTERGENIC
3R	3882796	3R_3882796_SNP [dm3] 3R_8057074_SNP [dm6]	C	G	6.016e^-4	0.942	INTERGENIC
3L	16558265	3L_16558265_SNP [dm3] 3L_16565165_SNP [dm6]	G	A	6.022e^-4	0.942	SYNONYMOUS_CODING Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13750769	3R_13750769_SNP [dm3] 3R_17925047_SNP [dm6]	A	T	6.034e^-4	0.942	INTRON cpo
2L	10118452	2L_10118452_SNP [dm3] 2L_10118452_SNP [dm6]	G	T	6.037e^-4	0.942	INTRON CG44153 & 1 other	transposable element FlyBase
X	10808054	X_10808054_INS [dm3] X_10914021_INS [dm6]	C	CCAATC	6.039e^-4	0.942	INTRON CG43901
3R	10581342	3R_10581342_SNP [dm3] 3R_14755620_SNP [dm6]	G	T	6.042e^-4	0.942	INTRON jvl
3R	12834151	3R_12834151_SNP [dm3] 3R_17008429_SNP [dm6]	T	G	6.043e^-4	0.942	UPSTREAM CG8907 INTRON CG8907
3L	2770658	3L_2770658_SNP [dm3] 3L_2770658_SNP [dm6]	A	T	6.046e^-4	0.942	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2770665	3L_2770665_SNP [dm3] 3L_2770665_SNP [dm6]	G	A	6.046e^-4	0.942	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5154878	3R_5154878_SNP [dm3] 3R_9329156_SNP [dm6]	C	T	6.051e^-4	0.942	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	25161815	3R_25161815_SNP [dm3] 3R_29336093_SNP [dm6]	C	T	6.052e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2693224	3R_2693224_SNP [dm3] 3R_6867502_SNP [dm6]	A	G	6.052e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7221649	3L_7221649_SNP [dm3] 3L_7228549_SNP [dm6]	G	A	6.059e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21025820	3R_21025820_SNP [dm3] 3R_25200098_SNP [dm6]	A	G	6.062e^-4	0.942	INTRON Cad96Ca & 1 other	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	13177493	2R_13177493_SNP [dm3] 2R_17289988_SNP [dm6]	G	T	6.064e^-4	0.942	INTRON mbl
2R	11462374	2R_11462374_SNP [dm3] 2R_15574869_SNP [dm6]	C	T	6.070e^-4	0.942	UPSTREAM CG8204 INTERGENIC
3R	15347930	3R_15347930_SNP [dm3] 3R_19522208_SNP [dm6]	G	A	6.078e^-4	0.942	INTRON Dys
3R	11443998	3R_11443998_SNP [dm3] 3R_15618276_SNP [dm6]	G	A	6.086e^-4	0.942	INTERGENIC
2L	20485073	2L_20485073_SNP [dm3] 2L_20485073_SNP [dm6]	G	T	6.086e^-4	0.942	UPSTREAM CR44980 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11812315	3L_11812315_SNP [dm3] 3L_11819215_SNP [dm6]	T	A	6.110e^-4	0.942	INTRON CG5946
3L	6114346	3L_6114346_SNP [dm3] 3L_6121246_SNP [dm6]	T	G	6.115e^-4	0.942	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3R	15348147	3R_15348147_SNP [dm3] 3R_19522425_SNP [dm6]	A	C	6.116e^-4	0.942	INTRON Dys
X	21047320	X_21047320_DEL [dm3] X_21176293_DEL [dm6]	GAC	G	6.121e^-4	0.942	INTERGENIC
2L	19340997	2L_19340997_SNP [dm3] 2L_19340997_SNP [dm6]	C	T	6.136e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19342205	2L_19342205_SNP [dm3] 2L_19342205_SNP [dm6]	A	G	6.136e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7645097	2R_7645097_SNP [dm3] 2R_11757592_SNP [dm6]	G	C	6.138e^-4	0.942	UTR_5_PRIME ths
2L	15496147	2L_15496147_SNP [dm3] 2L_15496147_SNP [dm6]	T	G	6.149e^-4	0.942	INTERGENIC

By genomic position
Variant impact
Gene name

TimeGrooming phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results