DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.571e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001056
In_3R_Mo	0.021025

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	6.2984	0.0429
In_2R_NS	4.7659	0.0923
In_3R_Mo	3.708	0.0542

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2077 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10895995	3L_10895995_SNP [dm3] 3L_10902895_SNP [dm6]	G	A	1.556e^-6	0.713	INTERGENIC
3L	10896006	3L_10896006_SNP [dm3] 3L_10902906_SNP [dm6]	A	C	2.055e^-6	0.713	INTERGENIC
2R	5187924	2R_5187924_DEL [dm3] 2R_9300419_DEL [dm6]	TT	T	4.376e^-6	0.713	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	4.811e^-6	0.713	INTRON dally
3L	10115869	3L_10115869_SNP [dm3] 3L_10122769_SNP [dm6]	A	G	5.360e^-6	0.713	INTRON dpr6
2L	20501211	2L_20501211_SNP [dm3] 2L_20501211_SNP [dm6]	A	T	5.706e^-6	0.713	INTERGENIC
2L	8875224	2L_8875224_SNP [dm3] 2L_8875224_SNP [dm6]	C	T	6.188e^-6	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17319938	3L_17319938_SNP [dm3] 3L_17326838_SNP [dm6]	C	A	6.259e^-6	0.713	DOWNSTREAM Or74a INTERGENIC
2L	4710282	2L_4710282_SNP [dm3] 2L_4710282_SNP [dm6]	C	T	7.163e^-6	0.713	INTRON CG34351
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	7.207e^-6	0.713	INTERGENIC
3L	8873547	3L_8873547_SNP [dm3] 3L_8880447_SNP [dm6]	G	A	8.524e^-6	0.713	INTRON dally
3R	10231130	3R_10231130_SNP [dm3] 3R_14405408_SNP [dm6]	G	A	9.137e^-6	0.713	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
2L	13874082	2L_13874082_SNP [dm3] 2L_13874082_SNP [dm6]	A	T	1.061e^-5	0.713	INTRON CenG1A
2R	11973345	2R_11973345_SNP [dm3] 2R_16085840_SNP [dm6]	A	C	1.078e^-5	0.713	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10266273	3L_10266273_SNP [dm3] 3L_10273173_SNP [dm6]	G	C	1.207e^-5	0.713	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	7299023	3L_7299023_SNP [dm3] 3L_7305923_SNP [dm6]	C	T	1.372e^-5	0.713	INTRON unc-13-4A
3R	25509567	3R_25509567_SNP [dm3] 3R_29683845_SNP [dm6]	T	G	1.380e^-5	0.713	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
2R	10091601	2R_10091601_MNP [dm3] 2R_14204096_MNP [dm6]	AGA	TCT	1.442e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7170821	2R_7170821_SNP [dm3] 2R_11283316_SNP [dm6]	G	A	1.485e^-5	0.713	SYNONYMOUS_CODING CG9062 UPSTREAM CG13220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	3960282	3L_3960282_SNP [dm3] 3L_3960282_SNP [dm6]	G	C	1.531e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3L	3960289	3L_3960289_SNP [dm3] 3L_3960289_SNP [dm6]	G	C	1.531e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2L	2918965	2L_2918965_SNP [dm3] 2L_2918965_SNP [dm6]	T	A	1.698e^-5	0.713	INTRON lilli
3L	17323366	3L_17323366_SNP [dm3] 3L_17330266_SNP [dm6]	G	A	1.823e^-5	0.713	INTERGENIC
2L	19239420	2L_19239420_SNP [dm3] 2L_19239420_SNP [dm6]	T	A	1.924e^-5	0.713	INTERGENIC
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	2.009e^-5	0.713	INTRON AGO3	transposable element FlyBase
2L	17255535	2L_17255535_SNP [dm3] 2L_17255535_SNP [dm6]	T	G	2.026e^-5	0.713	INTRON beat-IIIc
2L	17255537	2L_17255537_SNP [dm3] 2L_17255537_SNP [dm6]	T	A	2.026e^-5	0.713	INTRON beat-IIIc
3L	3960284	3L_3960284_SNP [dm3] 3L_3960284_SNP [dm6]	T	G	2.058e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3R	18802106	3R_18802106_SNP [dm3] 3R_22976384_SNP [dm6]	A	C	2.194e^-5	0.713	UPSTREAM CG17244 INTERGENIC
X	4549688	X_4549688_SNP [dm3] X_4655655_SNP [dm6]	T	A	2.210e^-5	0.713	INTRON Cbp80
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	2.243e^-5	0.713	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10091586	2R_10091586_INS [dm3] 2R_14204081_INS [dm6]	G	GA	2.262e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	15568050	2R_15568050_SNP [dm3] 2R_19680545_SNP [dm6]	A	T	2.285e^-5	0.713	DOWNSTREAM CG15127 INTERGENIC
3L	3960299	3L_3960299_SNP [dm3] 3L_3960299_SNP [dm6]	A	T	2.324e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
3L	3960303	3L_3960303_SNP [dm3] 3L_3960303_SNP [dm6]	A	T	2.324e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2R	17886746	2R_17886746_SNP [dm3] 2R_21999241_SNP [dm6]	A	G	2.489e^-5	0.713	INTRON CG34370
3R	22989578	3R_22989578_SNP [dm3] 3R_27163856_SNP [dm6]	T	A	2.757e^-5	0.713	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
3L	7863797	3L_7863797_SNP [dm3] 3L_7870697_SNP [dm6]	G	C	2.782e^-5	0.713	INTRON CG32365
2R	9704817	2R_9704817_SNP [dm3] 2R_13817312_SNP [dm6]	C	T	2.835e^-5	0.713	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
2L	14545701	2L_14545701_SNP [dm3] 2L_14545701_SNP [dm6]	G	A	2.839e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10091608	2R_10091608_DEL [dm3] 2R_14204103_DEL [dm6]	CCA	TG	2.924e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091709	2R_10091709_SNP [dm3] 2R_14204204_SNP [dm6]	A	G	2.924e^-5	0.713	INTRON Sox15	regulatory region REDfly_CRMs
2R	16892823	2R_16892823_SNP [dm3] 2R_21005318_SNP [dm6]	T	A	2.937e^-5	0.713	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
3L	4598860	3L_4598860_SNP [dm3] 3L_4598860_SNP [dm6]	T	A	2.944e^-5	0.713	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
2R	6021890	2R_6021890_SNP [dm3] 2R_10134385_SNP [dm6]	G	C	2.944e^-5	0.713	UPSTREAM gem INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17471364	2L_17471364_SNP [dm3] 2L_17471364_SNP [dm6]	A	G	2.980e^-5	0.713	UPSTREAM Sgt INTRON BicD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4710330	2L_4710330_SNP [dm3] 2L_4710330_SNP [dm6]	C	T	3.198e^-5	0.713	INTRON CG34351
2R	15568105	2R_15568105_SNP [dm3] 2R_19680600_SNP [dm6]	C	A	3.241e^-5	0.713	DOWNSTREAM CG15127 INTERGENIC
3R	18541217	3R_18541217_SNP [dm3] 3R_22715495_SNP [dm6]	A	C	3.243e^-5	0.713	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22392305	3R_22392305_SNP [dm3] 3R_26566583_SNP [dm6]	G	C	3.265e^-5	0.713	SPLICE_SITE_REGION scrib INTRON scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h
3R	18802166	3R_18802166_SNP [dm3] 3R_22976444_SNP [dm6]	T	C	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
3R	18802252	3R_18802252_SNP [dm3] 3R_22976530_SNP [dm6]	A	C	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
3R	18802266	3R_18802266_SNP [dm3] 3R_22976544_SNP [dm6]	C	A	3.295e^-5	0.713	UPSTREAM CG17244 INTERGENIC
X	15285657	X_15285657_SNP [dm3] X_15391624_SNP [dm6]	G	A	3.382e^-5	0.713	INTRON Cngl
2L	17255512	2L_17255512_SNP [dm3] 2L_17255512_SNP [dm6]	G	A	3.424e^-5	0.713	INTRON beat-IIIc
3L	16228828	3L_16228828_SNP [dm3] 3L_16235728_SNP [dm6]	G	A	3.592e^-5	0.713	SYNONYMOUS_CODING l_3_72Dp
3L	1040033	3L_1040033_SNP [dm3] 3L_1040033_SNP [dm6]	G	A	3.636e^-5	0.713	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14166263	2R_14166263_SNP [dm3] 2R_18278758_SNP [dm6]	T	C	3.818e^-5	0.713	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
2L	20503081	2L_20503081_SNP [dm3] 2L_20503081_SNP [dm6]	G	T	3.866e^-5	0.713	INTERGENIC
X	4549691	X_4549691_SNP [dm3] X_4655658_SNP [dm6]	T	A	3.923e^-5	0.713	INTRON Cbp80
X	4549692	X_4549692_INS [dm3] X_4655659_INS [dm6]	T	TG	3.923e^-5	0.713	INTRON Cbp80
2R	14704169	2R_14704169_SNP [dm3] 2R_18816664_SNP [dm6]	G	A	3.945e^-5	0.713	UPSTREAM CG15096 INTERGENIC
3L	5679309	3L_5679309_SNP [dm3] 3L_5686209_SNP [dm6]	G	A	4.028e^-5	0.713	INTRON sif
3L	9282952	3L_9282952_SNP [dm3] 3L_9289852_SNP [dm6]	G	C	4.095e^-5	0.713	INTERGENIC
2L	17255531	2L_17255531_INS [dm3] 2L_17255531_INS [dm6]	T	TT	4.103e^-5	0.713	INTRON beat-IIIc
3L	5268130	3L_5268130_SNP [dm3] 3L_5275030_SNP [dm6]	G	T	4.197e^-5	0.713	INTRON shep	TF binding site BDTNP1_TFBS_twi
3R	8169826	3R_8169826_SNP [dm3] 3R_12344104_SNP [dm6]	G	T	4.348e^-5	0.713	INTERGENIC
2L	1550988	2L_1550988_SNP [dm3] 2L_1550988_SNP [dm6]	C	A	4.374e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14899339	3L_14899339_SNP [dm3] 3L_14906239_SNP [dm6]	C	A	4.394e^-5	0.713	INTRON DCX-EMAP
2L	16381249	2L_16381249_SNP [dm3] 2L_16381249_SNP [dm6]	C	T	4.395e^-5	0.713	INTERGENIC
3L	17327210	3L_17327210_SNP [dm3] 3L_17334110_SNP [dm6]	T	A	4.576e^-5	0.713	EXON CR44563
X	4979384	X_4979384_INS [dm3] X_5085351_INS [dm6]	T	TG	4.738e^-5	0.713	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23035609	3R_23035609_SNP [dm3] 3R_27209887_SNP [dm6]	G	A	4.817e^-5	0.713	INTERGENIC
2R	7393068	2R_7393068_SNP [dm3] 2R_11505563_SNP [dm6]	G	T	4.882e^-5	0.713	INTRON inv
2R	7393078	2R_7393078_INS [dm3] 2R_11505573_INS [dm6]	T	TT	4.882e^-5	0.713	INTRON inv
2L	17255501	2L_17255501_SNP [dm3] 2L_17255501_SNP [dm6]	G	A	5.063e^-5	0.713	INTRON beat-IIIc
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	5.161e^-5	0.713	INTRON Eip75B
3L	3960446	3L_3960446_SNP [dm3] 3L_3960446_SNP [dm6]	G	C	5.163e^-5	0.713	UPSTREAM CG12605 INTRON CG12605
2R	15568400	2R_15568400_SNP [dm3] 2R_19680895_SNP [dm6]	T	G	5.169e^-5	0.713	UTR_3_PRIME CG15127
3L	16228918	3L_16228918_SNP [dm3] 3L_16235818_SNP [dm6]	G	A	5.175e^-5	0.713	SYNONYMOUS_CODING l_3_72Dp
3R	25490028	3R_25490028_SNP [dm3] 3R_29664306_SNP [dm6]	T	C	5.234e^-5	0.713	UPSTREAM ppk21 INTERGENIC
X	3939086	X_3939086_DEL [dm3] X_4045053_DEL [dm6]	TT	T	5.286e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16703578	2L_16703578_SNP [dm3] 2L_16703578_SNP [dm6]	T	G	5.343e^-5	0.713	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17303620	2R_17303620_SNP [dm3] 2R_21416115_SNP [dm6]	C	T	5.361e^-5	0.713	INTRON Sdc
2L	17528743	2L_17528743_SNP [dm3] 2L_17528743_SNP [dm6]	A	C	5.385e^-5	0.713	NON_SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
3R	13473807	3R_13473807_SNP [dm3] 3R_17648085_SNP [dm6]	T	C	5.554e^-5	0.713	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	5.587e^-5	0.713	INTRON sty
3L	15454543	3L_15454543_SNP [dm3] 3L_15461443_SNP [dm6]	A	C	5.595e^-5	0.713	INTERGENIC
X	10883491	X_10883491_SNP [dm3] X_10989458_SNP [dm6]	G	T	5.613e^-5	0.713	INTRON CG42339
3L	11096215	3L_11096215_SNP [dm3] 3L_11103115_SNP [dm6]	G	T	5.795e^-5	0.713	UPSTREAM Elo68alpha DOWNSTREAM CG32071 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26569833	3R_26569833_SNP [dm3] 3R_30744111_SNP [dm6]	G	A	5.920e^-5	0.713	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3R	26569837	3R_26569837_SNP [dm3] 3R_30744115_SNP [dm6]	T	G	5.920e^-5	0.713	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3L	9868412	3L_9868412_SNP [dm3] 3L_9875312_SNP [dm6]	A	G	5.946e^-5	0.713	UPSTREAM CR45406 INTERGENIC
3L	3974743	3L_3974743_INS [dm3] 3L_3974743_INS [dm6]	G	GTCTTGG	5.951e^-5	0.713	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26639905	3R_26639905_SNP [dm3] 3R_30814183_SNP [dm6]	G	C	6.015e^-5	0.713	INTRON cindr
2L	10297946	2L_10297946_SNP [dm3] 2L_10297946_SNP [dm6]	G	A	6.116e^-5	0.713	INTRON CR44968 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	7299028	3L_7299028_SNP [dm3] 3L_7305928_SNP [dm6]	T	C	6.153e^-5	0.713	INTRON unc-13-4A
2R	15048933	2R_15048933_SNP [dm3] 2R_19161428_SNP [dm6]	A	G	6.183e^-5	0.713	INTRON ena
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	6.212e^-5	0.713	INTRON Sema-2a
X	1455065	X_1455065_SNP [dm3] X_1561032_SNP [dm6]	G	T	6.263e^-5	0.713	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.190e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.09203

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	3.1384	0.0765

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1790 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13360523	3R_13360523_INS [dm3] 3R_17534801_INS [dm6]	G	GGTAAATTAAG...	1.400e^-6	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	22712101	3R_22712101_SNP [dm3] 3R_26886379_SNP [dm6]	T	G	1.723e^-6	0.942	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4816839	3L_4816839_SNP [dm3] 3L_4816839_SNP [dm6]	G	A	3.016e^-6	0.942	INTRON Dhc64C
3R	3861686	3R_3861686_SNP [dm3] 3R_8035964_SNP [dm6]	T	C	5.385e^-6	0.942	SYNONYMOUS_CODING unc-45
3R	3862288	3R_3862288_SNP [dm3] 3R_8036566_SNP [dm6]	A	T	5.385e^-6	0.942	UTR_3_PRIME unc-45
3R	11066620	3R_11066620_SNP [dm3] 3R_15240898_SNP [dm6]	A	G	5.707e^-6	0.942	SYNONYMOUS_CODING tefu
3R	24384413	3R_24384413_SNP [dm3] 3R_28558691_SNP [dm6]	G	T	5.760e^-6	0.942	INTERGENIC
3R	24384414	3R_24384414_SNP [dm3] 3R_28558692_SNP [dm6]	C	T	5.760e^-6	0.942	INTERGENIC
3L	4816895	3L_4816895_SNP [dm3] 3L_4816895_SNP [dm6]	G	A	6.075e^-6	0.942	INTRON Dhc64C
3R	13360465	3R_13360465_SNP [dm3] 3R_17534743_SNP [dm6]	T	A	6.528e^-6	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	4437687	3L_4437687_SNP [dm3] 3L_4437687_SNP [dm6]	A	T	6.667e^-6	0.942	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	14097292	3L_14097292_SNP [dm3] 3L_14104192_SNP [dm6]	T	C	1.114e^-5	0.942	UTR_3_PRIME Sox21a	TF binding site mE1_TFBS_cad
3L	4816877	3L_4816877_SNP [dm3] 3L_4816877_SNP [dm6]	G	T	1.207e^-5	0.942	INTRON Dhc64C
3L	4816882	3L_4816882_SNP [dm3] 3L_4816882_SNP [dm6]	T	C	1.207e^-5	0.942	INTRON Dhc64C
3R	24384144	3R_24384144_SNP [dm3] 3R_28558422_SNP [dm6]	A	G	1.230e^-5	0.942	INTERGENIC
2L	9638967	2L_9638967_SNP [dm3] 2L_9638967_SNP [dm6]	C	T	1.237e^-5	0.942	INTRON Apoltp
3R	19926037	3R_19926037_SNP [dm3] 3R_24100315_SNP [dm6]	C	A	1.247e^-5	0.942	INTRON 4EHP
X	4850465	X_4850465_SNP [dm3] X_4956432_SNP [dm6]	G	T	1.343e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	1.504e^-5	0.942	INTRON CG40470
3R	13360951	3R_13360951_SNP [dm3] 3R_17535229_SNP [dm6]	A	C	1.585e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	4816896	3L_4816896_SNP [dm3] 3L_4816896_SNP [dm6]	T	C	1.601e^-5	0.942	INTRON Dhc64C
X	16785092	X_16785092_SNP [dm3] X_16891059_SNP [dm6]	C	T	1.670e^-5	0.942	DOWNSTREAM CG13002 INTERGENIC
2R	12033683	2R_12033683_SNP [dm3] 2R_16146178_SNP [dm6]	A	C	1.771e^-5	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3L	4816840	3L_4816840_SNP [dm3] 3L_4816840_SNP [dm6]	G	A	1.771e^-5	0.942	INTRON Dhc64C
3R	23161817	3R_23161817_SNP [dm3] 3R_27336095_SNP [dm6]	T	C	1.915e^-5	0.942	INTERGENIC
3R	19828734	3R_19828734_SNP [dm3] 3R_24003012_SNP [dm6]	A	G	2.209e^-5	0.942	INTRON KrT95D
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	2.242e^-5	0.942	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11814577	3L_11814577_SNP [dm3] 3L_11821477_SNP [dm6]	A	T	2.341e^-5	0.942	UTR_5_PRIME CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13360932	3R_13360932_SNP [dm3] 3R_17535210_SNP [dm6]	C	T	2.360e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	19458716	3R_19458716_SNP [dm3] 3R_23632994_SNP [dm6]	C	A	2.542e^-5	0.942	INTRON CG31145
3R	2816251	3R_2816251_SNP [dm3] 3R_6990529_SNP [dm6]	T	C	2.547e^-5	0.942	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11434734	3R_11434734_SNP [dm3] 3R_15609012_SNP [dm6]	G	T	2.559e^-5	0.942	INTERGENIC
3R	24384324	3R_24384324_INS [dm3] 3R_28558602_INS [dm6]	T	TCT	2.775e^-5	0.942	INTERGENIC
3R	12580990	3R_12580990_SNP [dm3] 3R_16755268_SNP [dm6]	G	C	2.856e^-5	0.942	INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	4850462	X_4850462_SNP [dm3] X_4956429_SNP [dm6]	T	C	2.925e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3R	14910632	3R_14910632_SNP [dm3] 3R_19084910_SNP [dm6]	G	A	3.113e^-5	0.942	INTRON cdi
2L	15616826	2L_15616826_INS [dm3] 2L_15616826_INS [dm6]	A	AG	3.225e^-5	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
3R	5123637	3R_5123637_SNP [dm3] 3R_9297915_SNP [dm6]	G	A	3.384e^-5	0.942	INTRON CG8861
2R	12024607	2R_12024607_SNP [dm3] 2R_16137102_SNP [dm6]	T	C	3.466e^-5	0.942	INTRON spin
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	3.571e^-5	0.942	INTERGENIC
3R	13360397	3R_13360397_SNP [dm3] 3R_17534675_SNP [dm6]	G	A	3.676e^-5	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	15794882	3R_15794882_SNP [dm3] 3R_19969160_SNP [dm6]	T	C	3.679e^-5	0.942	INTRON Hs6st
2L	4201844	2L_4201844_SNP [dm3] 2L_4201844_SNP [dm6]	A	G	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201848	2L_4201848_SNP [dm3] 2L_4201848_SNP [dm6]	C	A	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201850	2L_4201850_SNP [dm3] 2L_4201850_SNP [dm6]	A	T	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201851	2L_4201851_SNP [dm3] 2L_4201851_SNP [dm6]	T	G	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201853	2L_4201853_SNP [dm3] 2L_4201853_SNP [dm6]	A	T	3.726e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201858	2L_4201858_SNP [dm3] 2L_4201858_SNP [dm6]	G	A	3.726e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201859	2L_4201859_SNP [dm3] 2L_4201859_SNP [dm6]	A	G	3.726e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
3R	20424905	3R_20424905_SNP [dm3] 3R_24599183_SNP [dm6]	T	G	3.906e^-5	0.942	INTRON mld
X	16785091	X_16785091_SNP [dm3] X_16891058_SNP [dm6]	C	T	3.945e^-5	0.942	DOWNSTREAM CG13002 INTERGENIC
3L	513402	3L_513402_SNP [dm3] 3L_513402_SNP [dm6]	G	T	4.007e^-5	0.942	INTRON klar
3L	6983314	3L_6983314_SNP [dm3] 3L_6990214_SNP [dm6]	T	A	4.031e^-5	0.942	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11819478	3R_11819478_SNP [dm3] 3R_15993756_SNP [dm6]	C	T	4.120e^-5	0.942	UPSTREAM srp DOWNSTREAM CR44133 INTRON srp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15794958	3R_15794958_INS [dm3] 3R_19969236_INS [dm6]	T	TCGTTTAAGTT...	4.221e^-5	0.942	INTRON Hs6st
3L	12405643	3L_12405643_SNP [dm3] 3L_12412543_SNP [dm6]	T	A	4.481e^-5	0.942	INTRON CG32103
3L	9578066	3L_9578066_SNP [dm3] 3L_9584966_SNP [dm6]	T	A	4.508e^-5	0.942	INTRON CG42673
3R	6367514	3R_6367514_DEL [dm3] 3R_10541792_DEL [dm6]	TTCCA	T	4.572e^-5	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	3801043	3L_3801043_SNP [dm3] 3L_3801043_SNP [dm6]	T	G	4.574e^-5	0.942	UTR_5_PRIME CG32264 INTRON CG32264
2R	14332166	2R_14332166_SNP [dm3] 2R_18444661_SNP [dm6]	G	C	4.831e^-5	0.942	SYNONYMOUS_CODING slim
2R	17721491	2R_17721491_DEL [dm3] 2R_21833986_DEL [dm6]	CTTAT	C	4.965e^-5	0.942	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3R	14629014	3R_14629014_SNP [dm3] 3R_18803292_SNP [dm6]	T	A	4.973e^-5	0.942	UTR_3_PRIME CG18208
2L	6325352	2L_6325352_SNP [dm3] 2L_6325352_SNP [dm6]	A	C	5.001e^-5	0.942	SPLICE_SITE_REGION PDZ-GEF INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23928986	3R_23928986_SNP [dm3] 3R_28103264_SNP [dm6]	T	G	5.036e^-5	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3727474	3L_3727474_SNP [dm3] 3L_3727474_SNP [dm6]	T	A	5.098e^-5	0.942	INTRON CG32264
2L	4201855	2L_4201855_SNP [dm3] 2L_4201855_SNP [dm6]	T	G	5.132e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
3R	10039792	3R_10039792_SNP [dm3] 3R_14214070_SNP [dm6]	G	A	5.200e^-5	0.942	SYNONYMOUS_CODING Dop1R1
3R	5123656	3R_5123656_SNP [dm3] 3R_9297934_SNP [dm6]	A	G	5.234e^-5	0.942	INTRON CG8861
3R	11375463	3R_11375463_SNP [dm3] 3R_15549741_SNP [dm6]	C	G	5.288e^-5	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11375607	3R_11375607_SNP [dm3] 3R_15549885_SNP [dm6]	G	A	5.288e^-5	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
3L	18131081	3L_18131081_SNP [dm3] 3L_18137981_SNP [dm6]	C	T	5.323e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14336479	3L_14336479_SNP [dm3] 3L_14343379_SNP [dm6]	T	C	5.502e^-5	0.942	INTRON fz
3L	23647677	3L_23647677_SNP [dm3] 3L_23654577_SNP [dm6]	G	T	5.506e^-5	0.942	INTRON AGO3	transposable element FlyBase
3L	23672790	3L_23672790_SNP [dm3] 3L_23679690_SNP [dm6]	G	A	5.506e^-5	0.942	INTRON AGO3
3L	2106064	3L_2106064_SNP [dm3] 3L_2106064_SNP [dm6]	G	A	5.506e^-5	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11819375	3R_11819375_SNP [dm3] 3R_15993653_SNP [dm6]	G	A	5.754e^-5	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8563239	2R_8563239_SNP [dm3] 2R_12675734_SNP [dm6]	C	T	5.772e^-5	0.942	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3R	7764012	3R_7764012_SNP [dm3] 3R_11938290_SNP [dm6]	C	T	5.807e^-5	0.942	INTRON Cad87A
3R	11105933	3R_11105933_DEL [dm3] 3R_15280211_DEL [dm6]	TTTGTTGGCGATAAG...	T	6.082e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14192256	3L_14192256_SNP [dm3] 3L_14199156_SNP [dm6]	A	G	6.184e^-5	0.942	INTRON nuf
3L	11812051	3L_11812051_SNP [dm3] 3L_11818951_SNP [dm6]	C	T	6.185e^-5	0.942	INTRON CG5946
X	10804773	X_10804773_SNP [dm3] X_10910740_SNP [dm6]	G	C	6.193e^-5	0.942	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14092171	3R_14092171_SNP [dm3] 3R_18266449_SNP [dm6]	C	A	6.241e^-5	0.942	INTERGENIC
3L	11812446	3L_11812446_SNP [dm3] 3L_11819346_SNP [dm6]	G	A	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812457	3L_11812457_INS [dm3] 3L_11819357_INS [dm6]	TG	GAAT	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812474	3L_11812474_SNP [dm3] 3L_11819374_SNP [dm6]	A	G	6.287e^-5	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9261758	3L_9261758_INS [dm3] 3L_9268658_INS [dm6]	T	TT	6.324e^-5	0.942	INTRON GluRIB
3L	12374615	3L_12374615_SNP [dm3] 3L_12381515_SNP [dm6]	A	G	6.411e^-5	0.942	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	6.574e^-5	0.942	INTRON CG31191
3R	11471581	3R_11471581_SNP [dm3] 3R_15645859_SNP [dm6]	A	G	6.615e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11425306	3R_11425306_SNP [dm3] 3R_15599584_SNP [dm6]	G	C	6.709e^-5	0.942	INTERGENIC
3L	5422470	3L_5422470_SNP [dm3] 3L_5429370_SNP [dm6]	G	A	7.026e^-5	0.942	UTR_5_PRIME CG34391
2L	19392684	2L_19392684_SNP [dm3] 2L_19392684_SNP [dm6]	G	A	7.043e^-5	0.942	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	7.101e^-5	0.942	INTERGENIC
3R	11434604	3R_11434604_SNP [dm3] 3R_15608882_SNP [dm6]	C	A	7.270e^-5	0.942	INTERGENIC
3R	11434625	3R_11434625_SNP [dm3] 3R_15608903_SNP [dm6]	T	C	7.270e^-5	0.942	INTERGENIC
3R	11434671	3R_11434671_SNP [dm3] 3R_15608949_SNP [dm6]	G	A	7.270e^-5	0.942	INTERGENIC
3R	17842848	3R_17842848_SNP [dm3] 3R_22017126_SNP [dm6]	G	A	7.499e^-5	0.942	SYNONYMOUS_CODING CG6439 DOWNSTREAM CG6332	TF binding site mE1_TFBS_sens
3L	6391821	3L_6391821_SNP [dm3] 3L_6398721_SNP [dm6]	A	G	7.508e^-5	0.942	INTERGENIC
3R	11425983	3R_11425983_SNP [dm3] 3R_15600261_SNP [dm6]	T	C	7.716e^-5	0.942	INTERGENIC

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TimeGrooming phenotype

Phenotype distribution and association to known covariates

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GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results