DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.919e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08566

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1285 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1999566	2L_1999566_SNP [dm3] 2L_1999566_SNP [dm6]	T	C	2.610e^-6	0.87	UPSTREAM CR43464 INTRON CG33543
X	8716348	X_8716348_SNP [dm3] X_8822315_SNP [dm6]	G	T	3.310e^-6	0.87	INTERGENIC
2L	10671508	2L_10671508_SNP [dm3] 2L_10671508_SNP [dm6]	G	T	6.710e^-6	0.87	DOWNSTREAM CG31871 INTERGENIC
3L	21731303	3L_21731303_SNP [dm3] 3L_21738203_SNP [dm6]	G	A	7.405e^-6	0.87	SYNONYMOUS_CODING CG14567	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7628620	X_7628620_DEL [dm3] X_7734587_DEL [dm6]	TT	T	8.027e^-6	0.87	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15465476	3R_15465476_SNP [dm3] 3R_19639754_SNP [dm6]	A	G	1.156e^-5	0.87	INTRON subdued
3L	7416460	3L_7416460_SNP [dm3] 3L_7423360_SNP [dm6]	C	A	1.215e^-5	0.87	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7628580	X_7628580_SNP [dm3] X_7734547_SNP [dm6]	T	A	1.438e^-5	0.87	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	7628624	X_7628624_SNP [dm3] X_7734591_SNP [dm6]	C	T	1.438e^-5	0.87	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15142684	3L_15142684_SNP [dm3] 3L_15149584_SNP [dm6]	C	T	1.528e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3L	15142724	3L_15142724_SNP [dm3] 3L_15149624_SNP [dm6]	A	G	1.528e^-5	0.87	UPSTREAM FucTA INTRON FucTA
2R	12689673	2R_12689673_SNP [dm3] 2R_16802168_SNP [dm6]	G	A	1.536e^-5	0.87	INTERGENIC
3R	15345164	3R_15345164_SNP [dm3] 3R_19519442_SNP [dm6]	T	A	1.573e^-5	0.87	INTRON Dys
2L	6139911	2L_6139911_SNP [dm3] 2L_6139911_SNP [dm6]	T	C	1.717e^-5	0.87	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4591591	3R_4591591_SNP [dm3] 3R_8765869_SNP [dm6]	T	C	1.784e^-5	0.87	INTRON CG11768 & 1 other
3R	23947014	3R_23947014_SNP [dm3] 3R_28121292_SNP [dm6]	C	A	1.889e^-5	0.87	INTERGENIC
3L	3940665	3L_3940665_INS [dm3] 3L_3940665_INS [dm6]	C	CTT	2.034e^-5	0.87	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	8492858	2L_8492858_SNP [dm3] 2L_8492858_SNP [dm6]	A	G	2.069e^-5	0.87	INTRON Dh31
3L	3940049	3L_3940049_SNP [dm3] 3L_3940049_SNP [dm6]	G	A	2.085e^-5	0.87	SYNONYMOUS_CODING CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
3R	14721971	3R_14721971_SNP [dm3] 3R_18896249_SNP [dm6]	T	C	2.121e^-5	0.87	INTERGENIC
3R	14721978	3R_14721978_SNP [dm3] 3R_18896256_SNP [dm6]	G	A	2.121e^-5	0.87	INTERGENIC
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	2.215e^-5	0.87	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14489213	2R_14489213_SNP [dm3] 2R_18601708_SNP [dm6]	C	T	2.303e^-5	0.87	INTRON GEFmeso
2R	14489220	2R_14489220_SNP [dm3] 2R_18601715_SNP [dm6]	A	T	2.303e^-5	0.87	INTRON GEFmeso
3L	15142740	3L_15142740_SNP [dm3] 3L_15149640_SNP [dm6]	G	T	2.440e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3L	15142766	3L_15142766_SNP [dm3] 3L_15149666_SNP [dm6]	T	C	2.440e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3L	15143021	3L_15143021_SNP [dm3] 3L_15149921_SNP [dm6]	G	A	2.440e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3L	15142771	3L_15142771_SNP [dm3] 3L_15149671_SNP [dm6]	T	A	2.586e^-5	0.87	UPSTREAM FucTA INTRON FucTA
2L	5335031	2L_5335031_SNP [dm3] 2L_5335031_SNP [dm6]	T	C	3.381e^-5	0.87	INTRON fusl
3L	897809	3L_897809_SNP [dm3] 3L_897809_SNP [dm6]	T	C	3.398e^-5	0.87	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_sens
3R	19069671	3R_19069671_SNP [dm3] 3R_23243949_SNP [dm6]	G	A	3.592e^-5	0.87	INTRON CG4467
2R	18606874	2R_18606874_SNP [dm3] 2R_22719369_SNP [dm6]	C	T	3.643e^-5	0.87	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9012071	3L_9012071_SNP [dm3] 3L_9018971_SNP [dm6]	C	G	3.772e^-5	0.87	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17946976	2R_17946976_SNP [dm3] 2R_22059471_SNP [dm6]	C	T	3.819e^-5	0.87	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	21976919	3L_21976919_SNP [dm3] 3L_21983819_SNP [dm6]	A	G	3.840e^-5	0.87	UTR_3_PRIME CG7470	regulatory region REDfly_CRMs
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	3.973e^-5	0.87	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
2R	11821719	2R_11821719_SNP [dm3] 2R_15934214_SNP [dm6]	A	T	4.077e^-5	0.87	SYNONYMOUS_CODING Iap2 UPSTREAM CG8297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14489231	2R_14489231_DEL [dm3] 2R_18601726_DEL [dm6]	TCCCGCATT	T	4.339e^-5	0.87	INTRON GEFmeso
3R	14721967	3R_14721967_DEL [dm3] 3R_18896245_DEL [dm6]	AA	A	4.435e^-5	0.87	INTERGENIC
2R	10630988	2R_10630988_SNP [dm3] 2R_14743483_SNP [dm6]	C	A	4.530e^-5	0.87	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15142754	3L_15142754_SNP [dm3] 3L_15149654_SNP [dm6]	T	C	4.676e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3L	5986926	3L_5986926_SNP [dm3] 3L_5993826_SNP [dm6]	G	T	4.712e^-5	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10631006	2R_10631006_SNP [dm3] 2R_14743501_SNP [dm6]	C	A	4.925e^-5	0.87	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6764406	2R_6764406_SNP [dm3] 2R_10876901_SNP [dm6]	T	G	5.098e^-5	0.87	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6764412	2R_6764412_SNP [dm3] 2R_10876907_SNP [dm6]	A	C	5.098e^-5	0.87	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6764416	2R_6764416_SNP [dm3] 2R_10876911_SNP [dm6]	C	T	5.098e^-5	0.87	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17787614	2R_17787614_SNP [dm3] 2R_21900109_SNP [dm6]	A	T	5.885e^-5	0.87	INTRON Fili	TF binding site BDTNP1_TFBS_dl
2R	17787615	2R_17787615_SNP [dm3] 2R_21900110_SNP [dm6]	T	A	5.885e^-5	0.87	INTRON Fili	TF binding site BDTNP1_TFBS_dl
3R	15412003	3R_15412003_SNP [dm3] 3R_19586281_SNP [dm6]	C	G	6.184e^-5	0.87	NON_SYNONYMOUS_CODING Dys DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4002322	2L_4002322_SNP [dm3] 2L_4002322_SNP [dm6]	T	G	6.386e^-5	0.87	DOWNSTREAM CR45344 INTERGENIC
2R	6764250	2R_6764250_SNP [dm3] 2R_10876745_SNP [dm6]	A	G	6.452e^-5	0.87	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14726360	3R_14726360_SNP [dm3] 3R_18900638_SNP [dm6]	T	G	6.667e^-5	0.87	INTRON Rh2
2R	9495377	2R_9495377_SNP [dm3] 2R_13607872_SNP [dm6]	A	T	6.678e^-5	0.87	DOWNSTREAM CG12464 INTERGENIC
3R	15465452	3R_15465452_SNP [dm3] 3R_19639730_SNP [dm6]	G	A	6.836e^-5	0.87	INTRON subdued
2L	6921457	2L_6921457_SNP [dm3] 2L_6921457_SNP [dm6]	T	A	6.953e^-5	0.87	UPSTREAM Hrb27C INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	6922947	2L_6922947_SNP [dm3] 2L_6922947_SNP [dm6]	T	A	7.021e^-5	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15142765	3L_15142765_SNP [dm3] 3L_15149665_SNP [dm6]	T	C	7.190e^-5	0.87	UPSTREAM FucTA INTRON FucTA
3R	14726359	3R_14726359_SNP [dm3] 3R_18900637_SNP [dm6]	C	A	7.228e^-5	0.87	INTRON Rh2
3R	8491422	3R_8491422_SNP [dm3] 3R_12665700_SNP [dm6]	G	A	7.402e^-5	0.87	INTRON CG14395
3L	15050885	3L_15050885_SNP [dm3] 3L_15057785_SNP [dm6]	T	C	7.679e^-5	0.87	INTRON Sytbeta
2R	17787609	2R_17787609_SNP [dm3] 2R_21900104_SNP [dm6]	T	C	7.973e^-5	0.87	INTRON Fili	TF binding site BDTNP1_TFBS_dl
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	7.976e^-5	0.87	INTERGENIC
3R	8202207	3R_8202207_SNP [dm3] 3R_12376485_SNP [dm6]	A	T	8.082e^-5	0.87	UTR_3_PRIME GstD5 UPSTREAM GstD6
2L	12619651	2L_12619651_SNP [dm3] 2L_12619651_SNP [dm6]	A	C	8.128e^-5	0.87	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4002315	2L_4002315_SNP [dm3] 2L_4002315_SNP [dm6]	A	C	8.130e^-5	0.87	DOWNSTREAM CR45344 INTERGENIC
2R	18606883	2R_18606883_SNP [dm3] 2R_22719378_SNP [dm6]	A	C	8.353e^-5	0.87	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17598523	2L_17598523_SNP [dm3] 2L_17598523_SNP [dm6]	A	T	8.518e^-5	0.87	INTRON Sytalpha
3L	15430114	3L_15430114_SNP [dm3] 3L_15437014_SNP [dm6]	T	A	8.656e^-5	0.87	UPSTREAM CR43625 INTERGENIC
2L	10192147	2L_10192147_SNP [dm3] 2L_10192147_SNP [dm6]	A	G	8.702e^-5	0.87	UPSTREAM CG31874 INTRON Sur
2L	16009621	2L_16009621_SNP [dm3] 2L_16009621_SNP [dm6]	C	T	8.785e^-5	0.87	INTRON beat-Ic
2L	2731308	2L_2731308_SNP [dm3] 2L_2731308_SNP [dm6]	A	C	8.937e^-5	0.87	INTRON CG31689
3L	15142370	3L_15142370_DEL [dm3] 3L_15149270_DEL [dm6]	GTG	G	8.989e^-5	0.87	INTRON FucTA
2L	5642525	2L_5642525_SNP [dm3] 2L_5642525_SNP [dm6]	A	C	9.052e^-5	0.87	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3L	1555519	3L_1555519_SNP [dm3] 3L_1555519_SNP [dm6]	C	T	9.358e^-5	0.87	UTR_3_PRIME CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
3L	21779201	3L_21779201_SNP [dm3] 3L_21786101_SNP [dm6]	C	T	9.435e^-5	0.87	INTERGENIC
3L	11550919	3L_11550919_SNP [dm3] 3L_11557819_SNP [dm6]	A	C	9.454e^-5	0.87	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5335270	2L_5335270_SNP [dm3] 2L_5335270_SNP [dm6]	T	G	9.473e^-5	0.87	INTRON fusl
3L	5798846	3L_5798846_SNP [dm3] 3L_5805746_SNP [dm6]	A	G	9.725e^-5	0.87	UTR_3_PRIME CG42272 INTRON S6k
X	5753421	X_5753421_SNP [dm3] X_5859388_SNP [dm6]	T	G	9.738e^-5	0.87	INTERGENIC	insulator Insulator_Class_II.mE01
X	5753431	X_5753431_SNP [dm3] X_5859398_SNP [dm6]	C	T	9.738e^-5	0.87	INTERGENIC
2L	2647811	2L_2647811_SNP [dm3] 2L_2647811_SNP [dm6]	T	A	9.787e^-5	0.87	UPSTREAM CG43851 & 1 other DOWNSTREAM CG33125 INTERGENIC
2L	9150215	2L_9150215_SNP [dm3] 2L_9150215_SNP [dm6]	G	T	9.850e^-5	0.87	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11011822	3L_11011822_SNP [dm3] 3L_11018722_SNP [dm6]	A	C	9.898e^-5	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3230598	2L_3230598_SNP [dm3] 2L_3230598_SNP [dm6]	A	T	1.016e^-4	0.87	INTERGENIC
2R	13597379	2R_13597379_SNP [dm3] 2R_17709874_SNP [dm6]	A	T	1.018e^-4	0.87	UPSTREAM CG6424 INTRON CG6424
X	7632093	X_7632093_SNP [dm3] X_7738060_SNP [dm6]	C	T	1.049e^-4	0.87	SYNONYMOUS_CODING Tom40	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5335285	2L_5335285_SNP [dm3] 2L_5335285_SNP [dm6]	T	C	1.050e^-4	0.87	INTRON fusl
3R	19069726	3R_19069726_DEL [dm3] 3R_23244004_DEL [dm6]	TTCAGAC	T	1.070e^-4	0.87	INTRON CG4467
3R	19069735	3R_19069735_SNP [dm3] 3R_23244013_SNP [dm6]	T	A	1.070e^-4	0.87	INTRON CG4467
3R	3286382	3R_3286382_SNP [dm3] 3R_7460660_SNP [dm6]	A	C	1.074e^-4	0.87	INTERGENIC
3R	3286468	3R_3286468_SNP [dm3] 3R_7460746_SNP [dm6]	T	C	1.074e^-4	0.87	INTERGENIC
3L	9319161	3L_9319161_SNP [dm3] 3L_9326061_SNP [dm6]	T	G	1.088e^-4	0.87	INTERGENIC
3L	12578708	3L_12578708_SNP [dm3] 3L_12585608_SNP [dm6]	A	T	1.095e^-4	0.87	INTRON ara	TF binding site BDTNP1_TFBS_dl
X	7575765	X_7575765_SNP [dm3] X_7681732_SNP [dm6]	T	C	1.102e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	3609246	2L_3609246_SNP [dm3] 2L_3609246_SNP [dm6]	T	G	1.113e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3609248	2L_3609248_SNP [dm3] 2L_3609248_SNP [dm6]	A	T	1.113e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8546319	2R_8546319_SNP [dm3] 2R_12658814_SNP [dm6]	C	T	1.117e^-4	0.87	SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
3L	21768982	3L_21768982_SNP [dm3] 3L_21775882_SNP [dm6]	T	A	1.124e^-4	0.87	INTRON CG42689 & 1 other
3R	20432067	3R_20432067_SNP [dm3] 3R_24606345_SNP [dm6]	T	A	1.126e^-4	0.87	INTRON mld	TF binding site BDTNP1_TFBS_dl
3L	10578866	3L_10578866_SNP [dm3] 3L_10585766_SNP [dm6]	G	A	1.142e^-4	0.87	INTRON A2bp1	TF binding site mE1_TFBS_cad
2R	9363604	2R_9363604_SNP [dm3] 2R_13476099_SNP [dm6]	C	A	1.143e^-4	0.87	INTRON arr
2R	8438230	2R_8438230_DEL [dm3] 2R_12550725_DEL [dm6]	GTTGTTGG	G	1.153e^-4	0.87	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6147650	2L_6147650_SNP [dm3] 2L_6147650_SNP [dm6]	G	A	1.153e^-4	0.87	INTERGENIC
3L	8008086	3L_8008086_SNP [dm3] 3L_8014986_SNP [dm6]	A	C	1.177e^-4	0.87	INTRON nmo
2L	9343996	2L_9343996_SNP [dm3] 2L_9343996_SNP [dm6]	G	A	1.200e^-4	0.87	SYNONYMOUS_CODING CG3748
3L	3950438	3L_3950438_SNP [dm3] 3L_3950438_SNP [dm6]	C	A	1.249e^-4	0.87	DOWNSTREAM CG14984 INTERGENIC
2L	9827294	2L_9827294_SNP [dm3] 2L_9827294_SNP [dm6]	T	C	1.250e^-4	0.87	INTRON nAChRalpha6
2L	8492832	2L_8492832_SNP [dm3] 2L_8492832_SNP [dm6]	C	G	1.256e^-4	0.87	INTRON Dh31
3L	12335468	3L_12335468_SNP [dm3] 3L_12342368_SNP [dm6]	A	T	1.262e^-4	0.87	SPLICE_SITE_REGION CrzR INTRON CrzR
2L	8712316	2L_8712316_SNP [dm3] 2L_8712316_SNP [dm6]	A	G	1.269e^-4	0.87	INTRON raw
2L	8712319	2L_8712319_SNP [dm3] 2L_8712319_SNP [dm6]	A	G	1.269e^-4	0.87	INTRON raw
2L	8715372	2L_8715372_SNP [dm3] 2L_8715372_SNP [dm6]	T	C	1.281e^-4	0.87	UPSTREAM raw INTRON raw
2L	6146573	2L_6146573_SNP [dm3] 2L_6146573_SNP [dm6]	G	A	1.305e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18100005	2R_18100005_SNP [dm3] 2R_22212500_SNP [dm6]	A	G	1.329e^-4	0.87	UTR_3_PRIME CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18100024	2R_18100024_SNP [dm3] 2R_22212519_SNP [dm6]	T	C	1.329e^-4	0.87	UTR_3_PRIME CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23728354	3R_23728354_SNP [dm3] 3R_27902632_SNP [dm6]	G	A	1.347e^-4	0.87	INTRON CG34353
2R	4470480	2R_4470480_SNP [dm3] 2R_8582975_SNP [dm6]	T	A	1.375e^-4	0.87	INTRON CG42326
2L	6922953	2L_6922953_SNP [dm3] 2L_6922953_SNP [dm6]	C	G	1.390e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10054821	X_10054821_SNP [dm3] X_10160788_SNP [dm6]	A	G	1.419e^-4	0.87	INTRON CR44894 & 1 other
3L	3933517	3L_3933517_SNP [dm3] 3L_3933517_SNP [dm6]	A	T	1.430e^-4	0.87	UTR_5_PRIME Eip63F-1 INTRON Eip63F-1
3L	4158199	3L_4158199_SNP [dm3] 3L_4158199_SNP [dm6]	G	C	1.432e^-4	0.87	INTRON nab
X	5746480	X_5746480_SNP [dm3] X_5852447_SNP [dm6]	A	G	1.444e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17365898	2R_17365898_SNP [dm3] 2R_21478393_SNP [dm6]	G	C	1.453e^-4	0.87	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17564314	2R_17564314_SNP [dm3] 2R_21676809_SNP [dm6]	C	G	1.453e^-4	0.87	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8877416	2L_8877416_SNP [dm3] 2L_8877416_SNP [dm6]	C	T	1.469e^-4	0.87	INTERGENIC
2R	19185777	2R_19185777_SNP [dm3] 2R_23298254_SNP [dm6]	A	T	1.487e^-4	0.87	INTERGENIC
2L	10958554	2L_10958554_SNP [dm3] 2L_10958554_SNP [dm6]	G	T	1.494e^-4	0.87	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
X	5397683	X_5397683_INS [dm3] X_5503650_INS [dm6]	T	TAT	1.506e^-4	0.87	DOWNSTREAM CG4151 INTERGENIC
3R	26056024	3R_26056024_SNP [dm3] 3R_30230302_SNP [dm6]	A	C	1.510e^-4	0.87	INTERGENIC
2R	16281333	2R_16281333_SNP [dm3] 2R_20393828_SNP [dm6]	G	A	1.530e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5853405	2L_5853405_SNP [dm3] 2L_5853405_SNP [dm6]	G	A	1.541e^-4	0.87	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
3L	2826623	3L_2826623_SNP [dm3] 3L_2826623_SNP [dm6]	G	A	1.546e^-4	0.87	INTRON CG43444
X	13985495	X_13985495_SNP [dm3] X_14091462_SNP [dm6]	T	C	1.546e^-4	0.87	INTERGENIC
3R	20261008	3R_20261008_SNP [dm3] 3R_24435286_SNP [dm6]	A	G	1.554e^-4	0.87	INTRON nAChRalpha1
2R	4470481	2R_4470481_SNP [dm3] 2R_8582976_SNP [dm6]	T	C	1.557e^-4	0.87	INTRON CG42326
3R	16528014	3R_16528014_SNP [dm3] 3R_20702292_SNP [dm6]	A	C	1.561e^-4	0.87	INTRON Oamb
2L	9017353	2L_9017353_SNP [dm3] 2L_9017353_SNP [dm6]	T	C	1.571e^-4	0.87	INTERGENIC
3R	19069817	3R_19069817_SNP [dm3] 3R_23244095_SNP [dm6]	C	T	1.571e^-4	0.87	INTRON CG4467
3L	2984688	3L_2984688_SNP [dm3] 3L_2984688_SNP [dm6]	C	T	1.613e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10351910	X_10351910_SNP [dm3] X_10457877_SNP [dm6]	T	C	1.618e^-4	0.87	DOWNSTREAM Or9a INTERGENIC
3L	21873605	3L_21873605_SNP [dm3] 3L_21880505_SNP [dm6]	A	T	1.628e^-4	0.87	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	6501708	2R_6501708_SNP [dm3] 2R_10614203_SNP [dm6]	C	T	1.635e^-4	0.87	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18720658	2R_18720658_SNP [dm3] 2R_22833135_SNP [dm6]	C	T	1.635e^-4	0.87	SYNONYMOUS_CODING CG30265
3L	4510294	3L_4510294_SNP [dm3] 3L_4510294_SNP [dm6]	A	T	1.636e^-4	0.87	DOWNSTREAM Tie INTERGENIC
2R	14777397	2R_14777397_SNP [dm3] 2R_18889892_SNP [dm6]	T	G	1.636e^-4	0.87	INTRON sano
3L	3934535	3L_3934535_SNP [dm3] 3L_3934535_SNP [dm6]	A	T	1.641e^-4	0.87	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3L	3935382	3L_3935382_SNP [dm3] 3L_3935382_SNP [dm6]	A	G	1.641e^-4	0.87	DOWNSTREAM CG10866 INTRON Eip63F-1 EXON Eip63F-2
2L	14349919	2L_14349919_SNP [dm3] 2L_14349919_SNP [dm6]	T	A	1.644e^-4	0.87	DOWNSTREAM CR44850 INTRON l_2_34Fc
2R	15325056	2R_15325056_SNP [dm3] 2R_19437551_SNP [dm6]	A	C	1.644e^-4	0.87	UTR_5_PRIME Spt5 UPSTREAM Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15325062	2R_15325062_SNP [dm3] 2R_19437557_SNP [dm6]	T	G	1.644e^-4	0.87	UTR_5_PRIME Spt5 UPSTREAM Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8348082	X_8348082_SNP [dm3] X_8454049_SNP [dm6]	C	A	1.649e^-4	0.87	INTRON org-1
X	8348090	X_8348090_SNP [dm3] X_8454057_SNP [dm6]	T	C	1.649e^-4	0.87	INTRON org-1
2R	17265473	2R_17265473_SNP [dm3] 2R_21377968_SNP [dm6]	T	C	1.652e^-4	0.87	INTRON cv-2
2L	8188250	2L_8188250_SNP [dm3] 2L_8188250_SNP [dm6]	G	A	1.662e^-4	0.87	SYNONYMOUS_CODING Piezo
2L	9860703	2L_9860703_SNP [dm3] 2L_9860703_SNP [dm6]	A	T	1.669e^-4	0.87	INTRON nAChRalpha6
3L	15430189	3L_15430189_SNP [dm3] 3L_15437089_SNP [dm6]	A	G	1.688e^-4	0.87	UPSTREAM CR43625 INTERGENIC
3L	3935305	3L_3935305_SNP [dm3] 3L_3935305_SNP [dm6]	C	T	1.696e^-4	0.87	DOWNSTREAM CG10866 INTRON Eip63F-1 EXON Eip63F-2
3L	2984874	3L_2984874_SNP [dm3] 3L_2984874_SNP [dm6]	C	G	1.702e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2984610	3L_2984610_SNP [dm3] 3L_2984610_SNP [dm6]	T	C	1.708e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12334191	3L_12334191_SNP [dm3] 3L_12341091_SNP [dm6]	G	A	1.711e^-4	0.87	INTRON CrzR
2L	6923057	2L_6923057_SNP [dm3] 2L_6923057_SNP [dm6]	T	A	1.721e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1144355	X_1144355_SNP [dm3] X_1250322_SNP [dm6]	G	T	1.729e^-4	0.87	INTRON Atf3
2R	17673196	2R_17673196_SNP [dm3] 2R_21785691_SNP [dm6]	C	T	1.729e^-4	0.87	INTERGENIC
3L	9979985	3L_9979985_SNP [dm3] 3L_9986885_SNP [dm6]	A	G	1.734e^-4	0.87	INTRON dpr6
2L	6148619	2L_6148619_SNP [dm3] 2L_6148619_SNP [dm6]	G	C	1.743e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13851764	3R_13851764_SNP [dm3] 3R_18026042_SNP [dm6]	C	T	1.751e^-4	0.87	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20093034	2R_20093034_SNP [dm3] 2R_24205511_SNP [dm6]	A	T	1.762e^-4	0.87	UTR_3_PRIME CG11406 INTRON CG11406
3L	2682952	3L_2682952_SNP [dm3] 3L_2682952_SNP [dm6]	T	G	1.768e^-4	0.87	INTRON Fife
3R	19069734	3R_19069734_SNP [dm3] 3R_23244012_SNP [dm6]	C	T	1.771e^-4	0.87	INTRON CG4467
3R	20271808	3R_20271808_SNP [dm3] 3R_24446086_SNP [dm6]	T	G	1.787e^-4	0.87	INTRON nAChRalpha1
2R	6258362	2R_6258362_SNP [dm3] 2R_10370857_SNP [dm6]	C	G	1.788e^-4	0.87	INTRON CG42732
3L	18071395	3L_18071395_SNP [dm3] 3L_18078295_SNP [dm6]	T	C	1.792e^-4	0.87	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9966243	3L_9966243_SNP [dm3] 3L_9973143_SNP [dm6]	A	C	1.805e^-4	0.87	SYNONYMOUS_CODING CG42455 UTR_5_PRIME vnc	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	2647580	2L_2647580_SNP [dm3] 2L_2647580_SNP [dm6]	T	G	1.806e^-4	0.87	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CG33125
3R	4785939	3R_4785939_SNP [dm3] 3R_8960217_SNP [dm6]	A	G	1.806e^-4	0.87	INTRON CG11966
2R	4243905	2R_4243905_SNP [dm3] 2R_8356400_SNP [dm6]	C	A	1.824e^-4	0.87	INTRON pdm3
2L	6922844	2L_6922844_INS [dm3] 2L_6922844_INS [dm6]	A	AA	1.832e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17490787	2L_17490787_SNP [dm3] 2L_17490787_SNP [dm6]	A	G	1.832e^-4	0.87	INTRON qua	TF binding site mE1_TFBS_HSA
2R	17787618	2R_17787618_SNP [dm3] 2R_21900113_SNP [dm6]	G	A	1.832e^-4	0.87	INTRON Fili	TF binding site BDTNP1_TFBS_dl
3R	5206458	3R_5206458_SNP [dm3] 3R_9380736_SNP [dm6]	A	C	1.838e^-4	0.87	INTRON FER
2L	10644088	2L_10644088_SNP [dm3] 2L_10644088_SNP [dm6]	C	T	1.841e^-4	0.87	NON_SYNONYMOUS_CODING CG18284 DOWNSTREAM CG31872
2L	18526662	2L_18526662_SNP [dm3] 2L_18526662_SNP [dm6]	T	C	1.843e^-4	0.87	INTRON CG10211
2L	6924657	2L_6924657_SNP [dm3] 2L_6924657_SNP [dm6]	C	T	1.850e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6073010	2L_6073010_SNP [dm3] 2L_6073010_SNP [dm6]	G	A	1.856e^-4	0.87	INTRON Kr-h2	TF binding site mE1_TFBS_sens
2L	6073040	2L_6073040_SNP [dm3] 2L_6073040_SNP [dm6]	C	T	1.856e^-4	0.87	SPLICE_SITE_REGION Kr-h2 SYNONYMOUS_CODING Kr-h2
2R	13838954	2R_13838954_SNP [dm3] 2R_17951449_SNP [dm6]	G	A	1.856e^-4	0.87	INTERGENIC
X	4874900	X_4874900_SNP [dm3] X_4980867_SNP [dm6]	C	T	1.856e^-4	0.87	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4875481	X_4875481_SNP [dm3] X_4981448_SNP [dm6]	C	T	1.856e^-4	0.87	INTRON CR44833
X	4875757	X_4875757_SNP [dm3] X_4981724_SNP [dm6]	T	G	1.856e^-4	0.87	INTRON CR44833
X	4875758	X_4875758_SNP [dm3] X_4981725_SNP [dm6]	T	A	1.856e^-4	0.87	INTRON CR44833
X	3099116	X_3099116_SNP [dm3] X_3205083_SNP [dm6]	C	T	1.857e^-4	0.87	INTRON dnc	TF binding site mE1_TFBS_inv
3L	3480317	3L_3480317_SNP [dm3] 3L_3480317_SNP [dm6]	A	T	1.858e^-4	0.87	INTRON CG42324
3L	3480318	3L_3480318_SNP [dm3] 3L_3480318_SNP [dm6]	T	G	1.858e^-4	0.87	INTRON CG42324
2L	10281368	2L_10281368_SNP [dm3] 2L_10281368_SNP [dm6]	C	A	1.861e^-4	0.87	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
3L	7285350	3L_7285350_SNP [dm3] 3L_7292250_SNP [dm6]	T	C	1.868e^-4	0.87	INTRON unc-13-4A
3L	7285381	3L_7285381_SNP [dm3] 3L_7292281_SNP [dm6]	G	A	1.868e^-4	0.87	INTRON unc-13-4A
2L	16412312	2L_16412312_SNP [dm3] 2L_16412312_SNP [dm6]	A	C	1.872e^-4	0.87	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11476495	3R_11476495_DEL [dm3] 3R_15650773_DEL [dm6]	GT	G	1.876e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14721951	3R_14721951_SNP [dm3] 3R_18896229_SNP [dm6]	G	A	1.895e^-4	0.87	INTERGENIC
3R	14721952	3R_14721952_SNP [dm3] 3R_18896230_SNP [dm6]	A	G	1.895e^-4	0.87	INTERGENIC
2L	6923253	2L_6923253_SNP [dm3] 2L_6923253_SNP [dm6]	T	A	1.909e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6032206	2R_6032206_SNP [dm3] 2R_10144701_SNP [dm6]	C	T	1.917e^-4	0.87	SYNONYMOUS_CODING CG18011
3L	17494335	3L_17494335_SNP [dm3] 3L_17501235_SNP [dm6]	A	T	1.924e^-4	0.87	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20260975	3R_20260975_DEL [dm3] 3R_24435253_DEL [dm6]	AAAGTATGCGA...	A	1.943e^-4	0.87	INTRON nAChRalpha1
3R	26640096	3R_26640096_SNP [dm3] 3R_30814374_SNP [dm6]	C	T	1.947e^-4	0.87	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2R	17382467	2R_17382467_SNP [dm3] 2R_21494962_SNP [dm6]	T	C	1.951e^-4	0.87	INTRON Fkbp14
2L	9017531	2L_9017531_SNP [dm3] 2L_9017531_SNP [dm6]	T	C	1.956e^-4	0.87	INTERGENIC
3R	13912876	3R_13912876_SNP [dm3] 3R_18087154_SNP [dm6]	T	G	1.970e^-4	0.87	INTERGENIC
3R	23947817	3R_23947817_SNP [dm3] 3R_28122095_SNP [dm6]	A	G	1.983e^-4	0.87	INTERGENIC
2L	6920050	2L_6920050_SNP [dm3] 2L_6920050_SNP [dm6]	T	A	2.006e^-4	0.87	UTR_5_PRIME x16 UPSTREAM Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	10997480	2L_10997480_MNP [dm3] 2L_10997480_MNP [dm6]	ATT	TCA	2.017e^-4	0.87	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 & 1 other INTRON CG16833
2L	5310332	2L_5310332_SNP [dm3] 2L_5310332_SNP [dm6]	A	T	2.018e^-4	0.87	UTR_3_PRIME vri DOWNSTREAM CG14024
3L	3071629	3L_3071629_INS [dm3] 3L_3071629_INS [dm6]	T	TT	2.019e^-4	0.87	UPSTREAM CG32486 & 1 other INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5853676	2L_5853676_SNP [dm3] 2L_5853676_SNP [dm6]	C	T	2.020e^-4	0.87	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna
3R	10183081	3R_10183081_SNP [dm3] 3R_14357359_SNP [dm6]	T	C	2.025e^-4	0.87	DOWNSTREAM CG31320 INTRON NK7.1
2L	12620869	2L_12620869_SNP [dm3] 2L_12620869_SNP [dm6]	C	T	2.029e^-4	0.87	INTRON Ref2 & 1 other
X	1086929	X_1086929_SNP [dm3] X_1192896_SNP [dm6]	G	A	2.036e^-4	0.87	INTRON CG11380
X	1087445	X_1087445_SNP [dm3] X_1193412_SNP [dm6]	A	C	2.036e^-4	0.87	INTRON CG11380
X	1088671	X_1088671_SNP [dm3] X_1194638_SNP [dm6]	C	T	2.036e^-4	0.87	INTRON CG11380	TF binding site mE1_TFBS_chinmo
2R	20550806	2R_20550806_SNP [dm3] 2R_24663283_SNP [dm6]	A	G	2.062e^-4	0.87	DOWNSTREAM CG3663 & 1 other INTRON Cpr60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	8644350	2L_8644350_SNP [dm3] 2L_8644350_SNP [dm6]	A	T	2.077e^-4	0.87	INTRON Sema-1a
3R	850522	3R_850522_SNP [dm3] 3R_5024800_SNP [dm6]	T	A	2.082e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
2R	17588479	2R_17588479_SNP [dm3] 2R_21700974_SNP [dm6]	A	T	2.120e^-4	0.87	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27177581	3R_27177581_SNP [dm3] 3R_31351859_SNP [dm6]	A	T	2.121e^-4	0.87	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7416472	3L_7416472_SNP [dm3] 3L_7423372_SNP [dm6]	A	G	2.121e^-4	0.87	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15176995	2R_15176995_SNP [dm3] 2R_19289490_SNP [dm6]	T	A	2.132e^-4	0.87	NON_SYNONYMOUS_CODING CG18607 UPSTREAM FK506-bp2 DOWNSTREAM CG18606	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12578615	3L_12578615_SNP [dm3] 3L_12585515_SNP [dm6]	A	G	2.153e^-4	0.87	INTRON ara	TF binding site BDTNP1_TFBS_dl
3R	15425198	3R_15425198_SNP [dm3] 3R_19599476_SNP [dm6]	A	G	2.161e^-4	0.87	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15425240	3R_15425240_SNP [dm3] 3R_19599518_SNP [dm6]	A	T	2.161e^-4	0.87	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6922956	2L_6922956_SNP [dm3] 2L_6922956_SNP [dm6]	T	A	2.183e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6922987	2L_6922987_SNP [dm3] 2L_6922987_SNP [dm6]	T	C	2.183e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6923106	2L_6923106_INS [dm3] 2L_6923106_INS [dm6]	A	AT	2.183e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923108	2L_6923108_SNP [dm3] 2L_6923108_SNP [dm6]	A	G	2.183e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923109	2L_6923109_DEL [dm3] 2L_6923109_DEL [dm6]	TAC	T	2.183e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12584105	3L_12584105_SNP [dm3] 3L_12591005_SNP [dm6]	A	G	2.184e^-4	0.87	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17365034	2R_17365034_SNP [dm3] 2R_21477529_SNP [dm6]	A	T	2.205e^-4	0.87	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17365037	2R_17365037_SNP [dm3] 2R_21477532_SNP [dm6]	C	G	2.205e^-4	0.87	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17366027	2R_17366027_SNP [dm3] 2R_21478522_SNP [dm6]	G	A	2.227e^-4	0.87	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15466733	3R_15466733_SNP [dm3] 3R_19641011_SNP [dm6]	T	C	2.241e^-4	0.87	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3857133	3L_3857133_SNP [dm3] 3L_3857133_SNP [dm6]	C	T	2.247e^-4	0.87	INTRON Awh
2L	9088948	2L_9088948_SNP [dm3] 2L_9088948_SNP [dm6]	C	T	2.256e^-4	0.87	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21777654	3L_21777654_SNP [dm3] 3L_21784554_SNP [dm6]	A	T	2.259e^-4	0.87	INTERGENIC
3R	13917055	3R_13917055_SNP [dm3] 3R_18091333_SNP [dm6]	C	T	2.269e^-4	0.87	UTR_5_PRIME sr	TF binding site BDTNP1_TFBS_dl
2L	1911071	2L_1911071_SNP [dm3] 2L_1911071_SNP [dm6]	C	A	2.270e^-4	0.87	UPSTREAM CG7337 INTRON CG7337	TF binding site mE1_TFBS_Trl
2L	7071116	2L_7071116_SNP [dm3] 2L_7071116_SNP [dm6]	T	C	2.273e^-4	0.87	INTRON Pvf2
2L	7071139	2L_7071139_SNP [dm3] 2L_7071139_SNP [dm6]	A	G	2.273e^-4	0.87	INTRON Pvf2
2R	14940436	2R_14940436_SNP [dm3] 2R_19052931_SNP [dm6]	T	C	2.274e^-4	0.87	INTERGENIC
2L	9029933	2L_9029933_SNP [dm3] 2L_9029933_SNP [dm6]	C	T	2.275e^-4	0.87	INTRON CG9582 & 1 other
3L	12866444	3L_12866444_SNP [dm3] 3L_12873344_SNP [dm6]	A	T	2.280e^-4	0.87	INTERGENIC
2R	17294882	2R_17294882_INS [dm3] 2R_21407377_INS [dm6]	T	TT	2.287e^-4	0.87	INTRON Sdc
2L	22001622	2L_22001622_SNP [dm3] 2L_22001622_SNP [dm6]	G	T	2.290e^-4	0.87	INTERGENIC
3L	13945447	3L_13945447_DEL [dm3] 3L_13952347_DEL [dm6]	TT	C	2.295e^-4	0.87	INTRON CG32137
3L	13945451	3L_13945451_SNP [dm3] 3L_13952351_SNP [dm6]	T	C	2.295e^-4	0.87	INTRON CG32137
2L	6073007	2L_6073007_SNP [dm3] 2L_6073007_SNP [dm6]	T	G	2.296e^-4	0.87	INTRON Kr-h2	TF binding site mE1_TFBS_sens
2R	14560113	2R_14560113_SNP [dm3] 2R_18672608_SNP [dm6]	C	A	2.301e^-4	0.87	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14560114	2R_14560114_SNP [dm3] 2R_18672609_SNP [dm6]	C	A	2.301e^-4	0.87	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1096186	X_1096186_SNP [dm3] X_1202153_SNP [dm6]	G	A	2.301e^-4	0.87	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9640035	2L_9640035_SNP [dm3] 2L_9640035_SNP [dm6]	T	C	2.304e^-4	0.87	INTRON Apoltp
3L	22585926	3L_22585926_SNP [dm3] 3L_22592826_SNP [dm6]	G	A	2.318e^-4	0.87	INTRON CG14459
2L	9017628	2L_9017628_SNP [dm3] 2L_9017628_SNP [dm6]	A	T	2.340e^-4	0.87	INTERGENIC
3R	16964101	3R_16964101_SNP [dm3] 3R_21138379_SNP [dm6]	A	C	2.360e^-4	0.87	UTR_5_PRIME meigo UPSTREAM meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9494588	2R_9494588_DEL [dm3] 2R_13607083_DEL [dm6]	ATGAA	A	2.375e^-4	0.87	INTERGENIC
2R	9494637	2R_9494637_SNP [dm3] 2R_13607132_SNP [dm6]	C	T	2.375e^-4	0.87	INTERGENIC
2R	9494639	2R_9494639_SNP [dm3] 2R_13607134_SNP [dm6]	G	A	2.375e^-4	0.87	INTERGENIC
3R	18793665	3R_18793665_SNP [dm3] 3R_22967943_SNP [dm6]	A	C	2.375e^-4	0.87	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1887703	3R_1887703_SNP [dm3] 3R_6061981_SNP [dm6]	A	C	2.390e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22950996	3L_22950996_SNP [dm3] 3L_22957896_SNP [dm6]	T	C	2.392e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_bab1
X	7574870	X_7574870_SNP [dm3] X_7680837_SNP [dm6]	C	T	2.398e^-4	0.87	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9166949	2R_9166949_SNP [dm3] 2R_13279444_SNP [dm6]	T	C	2.403e^-4	0.87	INTRON Dh31-R
2R	12689566	2R_12689566_SNP [dm3] 2R_16802061_SNP [dm6]	A	C	2.407e^-4	0.87	INTERGENIC
2R	12689570	2R_12689570_SNP [dm3] 2R_16802065_SNP [dm6]	A	T	2.407e^-4	0.87	INTERGENIC
3L	19021075	3L_19021075_SNP [dm3] 3L_19027975_SNP [dm6]	C	T	2.423e^-4	0.87	INTRON nkd
3R	15467967	3R_15467967_SNP [dm3] 3R_19642245_SNP [dm6]	G	T	2.432e^-4	0.87	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10630994	2R_10630994_SNP [dm3] 2R_14743489_SNP [dm6]	T	A	2.435e^-4	0.87	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6070866	2L_6070866_SNP [dm3] 2L_6070866_SNP [dm6]	C	A	2.442e^-4	0.87	UPSTREAM Kr-h2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
X	15377102	X_15377102_SNP [dm3] X_15483069_SNP [dm6]	A	C	2.447e^-4	0.87	INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17947850	2R_17947850_SNP [dm3] 2R_22060345_SNP [dm6]	A	G	2.477e^-4	0.87	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8682902	3L_8682902_SNP [dm3] 3L_8689802_SNP [dm6]	C	T	2.480e^-4	0.87	INTERGENIC
3L	21773671	3L_21773671_SNP [dm3] 3L_21780571_SNP [dm6]	C	A	2.483e^-4	0.87	INTERGENIC
X	1092985	X_1092985_DEL [dm3] X_1198952_DEL [dm6]	TGCAAA	T	2.485e^-4	0.87	UPSTREAM CG14625 INTERGENIC
2L	18356777	2L_18356777_SNP [dm3] 2L_18356777_SNP [dm6]	C	A	2.493e^-4	0.87	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8724863	X_8724863_SNP [dm3] X_8830830_SNP [dm6]	T	C	2.512e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21784494	3L_21784494_SNP [dm3] 3L_21791394_SNP [dm6]	C	T	2.543e^-4	0.87	INTERGENIC
2L	13441013	2L_13441013_SNP [dm3] 2L_13441013_SNP [dm6]	T	C	2.550e^-4	0.87	INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
X	4875014	X_4875014_SNP [dm3] X_4980981_SNP [dm6]	A	G	2.553e^-4	0.87	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17294542	2R_17294542_SNP [dm3] 2R_21407037_SNP [dm6]	T	A	2.556e^-4	0.87	INTRON Sdc
3L	6265768	3L_6265768_SNP [dm3] 3L_6272668_SNP [dm6]	A	G	2.562e^-4	0.87	INTERGENIC
3R	15345225	3R_15345225_SNP [dm3] 3R_19519503_SNP [dm6]	T	A	2.568e^-4	0.87	INTRON Dys
3R	15345264	3R_15345264_SNP [dm3] 3R_19519542_SNP [dm6]	G	C	2.568e^-4	0.87	INTRON Dys
3L	21731854	3L_21731854_SNP [dm3] 3L_21738754_SNP [dm6]	A	G	2.571e^-4	0.87	UPSTREAM CG14567 DOWNSTREAM CG14566 INTERGENIC
3L	21772039	3L_21772039_SNP [dm3] 3L_21778939_SNP [dm6]	G	A	2.586e^-4	0.87	DOWNSTREAM CG42552 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1839119	3R_1839119_SNP [dm3] 3R_6013397_SNP [dm6]	G	A	2.587e^-4	0.87	INTERGENIC
2L	9350349	2L_9350349_SNP [dm3] 2L_9350349_SNP [dm6]	G	A	2.594e^-4	0.87	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
3L	890358	3L_890358_SNP [dm3] 3L_890358_SNP [dm6]	T	C	2.594e^-4	0.87	UPSTREAM snoRNA:CG32479-a INTRON CG32479 EXON snoRNA:CG32479-b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16244645	2L_16244645_SNP [dm3] 2L_16244645_SNP [dm6]	G	T	2.595e^-4	0.87	NON_SYNONYMOUS_CODING CG42818
2L	16244653	2L_16244653_SNP [dm3] 2L_16244653_SNP [dm6]	T	A	2.595e^-4	0.87	NON_SYNONYMOUS_CODING CG42818
3R	3330007	3R_3330007_SNP [dm3] 3R_7504285_SNP [dm6]	G	A	2.596e^-4	0.87	INTRON alpha-Est9
3R	25647204	3R_25647204_SNP [dm3] 3R_29821482_SNP [dm6]	C	G	2.597e^-4	0.87	INTRON neo
2R	14720236	2R_14720236_SNP [dm3] 2R_18832731_SNP [dm6]	A	G	2.599e^-4	0.87	DOWNSTREAM CG15098 INTRON CG15082	TF binding site mE1_TFBS_chinmo
3L	18071194	3L_18071194_SNP [dm3] 3L_18078094_SNP [dm6]	G	A	2.603e^-4	0.87	EXON CR45392	TF binding site mE1_TFBS_Trl
3L	7102746	3L_7102746_SNP [dm3] 3L_7109646_SNP [dm6]	C	A	2.615e^-4	0.87	INTRON form3
X	4875862	X_4875862_INS [dm3] X_4981829_INS [dm6]	T	TT	2.617e^-4	0.87	INTRON CR44833
3R	1823714	3R_1823714_SNP [dm3] 3R_5997992_SNP [dm6]	G	T	2.617e^-4	0.87	INTERGENIC
3L	18071764	3L_18071764_SNP [dm3] 3L_18078664_SNP [dm6]	T	C	2.631e^-4	0.87	DOWNSTREAM CR45392 INTERGENIC
2L	18652141	2L_18652141_SNP [dm3] 2L_18652141_SNP [dm6]	T	A	2.652e^-4	0.87	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14488647	2R_14488647_SNP [dm3] 2R_18601142_SNP [dm6]	G	A	2.689e^-4	0.87	INTRON GEFmeso
3L	9223256	3L_9223256_SNP [dm3] 3L_9230156_SNP [dm6]	C	A	2.716e^-4	0.87	INTERGENIC
X	1154119	X_1154119_SNP [dm3] X_1260086_SNP [dm6]	A	G	2.717e^-4	0.87	INTRON Atf3
2L	7156980	2L_7156980_SNP [dm3] 2L_7156980_SNP [dm6]	T	C	2.718e^-4	0.87	UTR_5_PRIME Pvf3	TF binding site mE1_TFBS_HSA
3R	8491614	3R_8491614_SNP [dm3] 3R_12665892_SNP [dm6]	A	C	2.718e^-4	0.87	UPSTREAM CG14395 INTRON CG14395
3L	3480364	3L_3480364_SNP [dm3] 3L_3480364_SNP [dm6]	C	T	2.726e^-4	0.87	INTRON CG42324
2L	8714931	2L_8714931_SNP [dm3] 2L_8714931_SNP [dm6]	T	C	2.739e^-4	0.87	UPSTREAM raw INTRON raw
3L	6676696	3L_6676696_SNP [dm3] 3L_6683596_SNP [dm6]	A	G	2.740e^-4	0.87	INTERGENIC
2L	9344906	2L_9344906_SNP [dm3] 2L_9344906_SNP [dm6]	C	T	2.745e^-4	0.87	DOWNSTREAM CG3748 INTERGENIC
3L	10527519	3L_10527519_SNP [dm3] 3L_10534419_SNP [dm6]	G	C	2.748e^-4	0.87	INTRON A2bp1
2L	10746788	2L_10746788_SNP [dm3] 2L_10746788_SNP [dm6]	C	G	2.755e^-4	0.87	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
2L	775208	2L_775208_SNP [dm3] 2L_775208_SNP [dm6]	C	T	2.757e^-4	0.87	INTERGENIC
2L	11092474	2L_11092474_SNP [dm3] 2L_11092474_SNP [dm6]	T	G	2.760e^-4	0.87	SYNONYMOUS_CODING CG4705
2L	11092483	2L_11092483_SNP [dm3] 2L_11092483_SNP [dm6]	G	A	2.760e^-4	0.87	SYNONYMOUS_CODING CG4705
2L	11092505	2L_11092505_SNP [dm3] 2L_11092505_SNP [dm6]	G	T	2.760e^-4	0.87	INTRON CG4705
2L	11092507	2L_11092507_SNP [dm3] 2L_11092507_SNP [dm6]	T	C	2.760e^-4	0.87	INTRON CG4705
2L	11092518	2L_11092518_SNP [dm3] 2L_11092518_SNP [dm6]	T	G	2.760e^-4	0.87	INTRON CG4705
2L	11092529	2L_11092529_SNP [dm3] 2L_11092529_SNP [dm6]	C	T	2.760e^-4	0.87	INTRON CG4705
2L	11092534	2L_11092534_SNP [dm3] 2L_11092534_SNP [dm6]	T	A	2.760e^-4	0.87	INTRON CG4705
2L	11092539	2L_11092539_SNP [dm3] 2L_11092539_SNP [dm6]	C	T	2.760e^-4	0.87	INTRON CG4705
3L	17463902	3L_17463902_SNP [dm3] 3L_17470802_SNP [dm6]	T	C	2.764e^-4	0.87	INTRON CG7589
3R	18889690	3R_18889690_SNP [dm3] 3R_23063968_SNP [dm6]	T	A	2.769e^-4	0.87	INTRON CG17111	TF binding site mE1_TFBS_inv
2L	9513731	2L_9513731_SNP [dm3] 2L_9513731_SNP [dm6]	A	T	2.778e^-4	0.87	INTRON CG33298
2R	13645475	2R_13645475_SNP [dm3] 2R_17757970_SNP [dm6]	C	T	2.804e^-4	0.87	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14044070	2L_14044070_SNP [dm3] 2L_14044070_SNP [dm6]	C	A	2.807e^-4	0.87	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11822399	2R_11822399_SNP [dm3] 2R_15934894_SNP [dm6]	T	A	2.808e^-4	0.87	UTR_5_PRIME CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	12109939	X_12109939_SNP [dm3] X_12215906_SNP [dm6]	C	T	2.809e^-4	0.87	INTRON Ten-a
2R	17587711	2R_17587711_DEL [dm3] 2R_21700206_DEL [dm6]	AAACAGAACCCACACAAAAG...	A	2.810e^-4	0.87	INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14489286	2R_14489286_SNP [dm3] 2R_18601781_SNP [dm6]	C	A	2.826e^-4	0.87	INTRON GEFmeso
2R	14489287	2R_14489287_SNP [dm3] 2R_18601782_SNP [dm6]	A	G	2.826e^-4	0.87	INTRON GEFmeso
2L	4040038	2L_4040038_SNP [dm3] 2L_4040038_SNP [dm6]	T	C	2.846e^-4	0.87	INTRON ed
2L	9947492	2L_9947492_SNP [dm3] 2L_9947492_SNP [dm6]	A	T	2.848e^-4	0.87	START_GAINED CG5853 UTR_5_PRIME CG5853 UPSTREAM CG5853
2L	10780566	2L_10780566_SNP [dm3] 2L_10780566_SNP [dm6]	G	C	2.852e^-4	0.87	INTRON CG31869
2R	18274801	2R_18274801_SNP [dm3] 2R_22387296_SNP [dm6]	T	C	2.881e^-4	0.87	UPSTREAM CR44757 INTRON CG13506
2R	10171349	2R_10171349_SNP [dm3] 2R_14283844_SNP [dm6]	G	C	2.884e^-4	0.87	INTRON Ih	TF binding site mE1_TFBS_cad
X	18829000	X_18829000_SNP [dm3] X_18934967_SNP [dm6]	C	G	2.898e^-4	0.87	INTRON CG43759
3R	1936848	3R_1936848_SNP [dm3] 3R_6111126_SNP [dm6]	G	A	2.903e^-4	0.87	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	3903216	3L_3903216_SNP [dm3] 3L_3903216_SNP [dm6]	A	T	2.906e^-4	0.87	UPSTREAM Sc2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9155657	2L_9155657_INS [dm3] 2L_9155657_INS [dm6]	T	TG	2.915e^-4	0.87	INTRON CG32982
3L	10164541	3L_10164541_SNP [dm3] 3L_10171441_SNP [dm6]	C	T	2.924e^-4	0.87	INTRON dpr10
2L	18094855	2L_18094855_SNP [dm3] 2L_18094855_SNP [dm6]	C	T	2.930e^-4	0.87	INTERGENIC
2R	17951372	2R_17951372_SNP [dm3] 2R_22063867_SNP [dm6]	T	C	2.937e^-4	0.87	INTRON Snp
3R	26388426	3R_26388426_SNP [dm3] 3R_30562704_SNP [dm6]	T	A	2.941e^-4	0.87	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	14254221	X_14254221_SNP [dm3] X_14360188_SNP [dm6]	T	G	2.944e^-4	0.87	INTRON dpr8
3L	21785788	3L_21785788_SNP [dm3] 3L_21792688_SNP [dm6]	A	T	2.953e^-4	0.87	INTERGENIC
3L	8822769	3L_8822769_SNP [dm3] 3L_8829669_SNP [dm6]	G	C	2.964e^-4	0.87	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17687065	2R_17687065_SNP [dm3] 2R_21799560_SNP [dm6]	A	G	2.990e^-4	0.87	UTR_3_PRIME CG4386 UPSTREAM CG18735
2L	5805140	2L_5805140_SNP [dm3] 2L_5805140_SNP [dm6]	T	G	2.992e^-4	0.87	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24418246	3R_24418246_SNP [dm3] 3R_28592524_SNP [dm6]	T	A	2.994e^-4	0.87	UPSTREAM CR43440 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	12001907	2R_12001907_SNP [dm3] 2R_16114402_SNP [dm6]	A	G	2.995e^-4	0.87	SYNONYMOUS_CODING Asph INTRON Asph
2R	12001910	2R_12001910_SNP [dm3] 2R_16114405_SNP [dm6]	G	C	2.995e^-4	0.87	SYNONYMOUS_CODING Asph INTRON Asph
2R	12001940	2R_12001940_SNP [dm3] 2R_16114435_SNP [dm6]	T	C	2.995e^-4	0.87	SYNONYMOUS_CODING Asph INTRON Asph
2L	16209094	2L_16209094_SNP [dm3] 2L_16209094_SNP [dm6]	G	C	3.006e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7628088	X_7628088_SNP [dm3] X_7734055_SNP [dm6]	A	G	3.016e^-4	0.87	SYNONYMOUS_CODING Pdp UPSTREAM Rab39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13023890	2L_13023890_SNP [dm3] 2L_13023890_SNP [dm6]	C	G	3.059e^-4	0.87	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad
3R	21010044	3R_21010044_SNP [dm3] 3R_25184322_SNP [dm6]	A	C	3.064e^-4	0.87	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21010046	3R_21010046_SNP [dm3] 3R_25184324_SNP [dm6]	C	A	3.064e^-4	0.87	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12335495	3L_12335495_SNP [dm3] 3L_12342395_SNP [dm6]	G	C	3.066e^-4	0.87	INTRON CrzR
3R	2334551	3R_2334551_SNP [dm3] 3R_6508829_SNP [dm6]	T	A	3.076e^-4	0.87	INTERGENIC
2R	5947344	2R_5947344_SNP [dm3] 2R_10059839_SNP [dm6]	G	T	3.088e^-4	0.87	INTRON magu
2L	4281124	2L_4281124_DEL [dm3] 2L_4281124_DEL [dm6]	GATGTAGTTTGACTTTG...	G	3.114e^-4	0.87	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17293507	2R_17293507_INS [dm3] 2R_21406002_INS [dm6]	A	ACA	3.127e^-4	0.87	INTRON Sdc
2R	13639832	2R_13639832_SNP [dm3] 2R_17752327_SNP [dm6]	T	C	3.156e^-4	0.87	SYNONYMOUS_CODING CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7575789	X_7575789_SNP [dm3] X_7681756_SNP [dm6]	A	G	3.156e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	2580830	3R_2580830_SNP [dm3] 3R_6755108_SNP [dm6]	T	A	3.173e^-4	0.87	UPSTREAM zen DOWNSTREAM bcd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18022995	X_18022995_SNP [dm3] X_18128962_SNP [dm6]	A	T	3.174e^-4	0.87	DOWNSTREAM mir-210 & 1 other INTERGENIC
X	18022996	X_18022996_SNP [dm3] X_18128963_SNP [dm6]	C	T	3.174e^-4	0.87	DOWNSTREAM mir-210 & 1 other INTERGENIC
X	18022999	X_18022999_SNP [dm3] X_18128966_SNP [dm6]	C	T	3.174e^-4	0.87	DOWNSTREAM mir-210 & 1 other INTERGENIC
3R	8201622	3R_8201622_SNP [dm3] 3R_12375900_SNP [dm6]	T	A	3.181e^-4	0.87	NON_SYNONYMOUS_CODING GstD5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4381581	X_4381581_SNP [dm3] X_4487548_SNP [dm6]	T	G	3.204e^-4	0.87	INTRON CR32773
X	4381589	X_4381589_SNP [dm3] X_4487556_SNP [dm6]	G	A	3.204e^-4	0.87	INTRON CR32773
2L	8712325	2L_8712325_DEL [dm3] 2L_8712325_DEL [dm6]	TTAGTT	T	3.214e^-4	0.87	INTRON raw
2R	5946028	2R_5946028_SNP [dm3] 2R_10058523_SNP [dm6]	G	A	3.235e^-4	0.87	INTRON magu
2L	8714935	2L_8714935_SNP [dm3] 2L_8714935_SNP [dm6]	A	C	3.243e^-4	0.87	UPSTREAM raw INTRON raw
2L	9827396	2L_9827396_SNP [dm3] 2L_9827396_SNP [dm6]	A	T	3.255e^-4	0.87	INTRON nAChRalpha6
3L	3119504	3L_3119504_SNP [dm3] 3L_3119504_SNP [dm6]	A	T	3.256e^-4	0.87	SYNONYMOUS_CODING prominin-like
2R	20146858	2R_20146858_SNP [dm3] 2R_24259335_SNP [dm6]	T	C	3.258e^-4	0.87	INTRON CG3376
2R	6823172	2R_6823172_SNP [dm3] 2R_10935667_SNP [dm6]	T	C	3.259e^-4	0.87	INTERGENIC
3L	7591556	3L_7591556_SNP [dm3] 3L_7598456_SNP [dm6]	A	G	3.274e^-4	0.87	INTRON CG33275
2R	16730482	2R_16730482_SNP [dm3] 2R_20842977_SNP [dm6]	A	G	3.275e^-4	0.87	INTERGENIC
3R	15465526	3R_15465526_SNP [dm3] 3R_19639804_SNP [dm6]	T	C	3.277e^-4	0.87	INTRON subdued
X	18415290	X_18415290_SNP [dm3] X_18521257_SNP [dm6]	G	A	3.318e^-4	0.87	UTR_3_PRIME CG6481 DOWNSTREAM Aats-his INTRON Bx
3L	8682958	3L_8682958_SNP [dm3] 3L_8689858_SNP [dm6]	G	A	3.319e^-4	0.87	INTERGENIC
X	1086921	X_1086921_SNP [dm3] X_1192888_SNP [dm6]	T	G	3.355e^-4	0.87	INTRON CG11380
X	1087391	X_1087391_SNP [dm3] X_1193358_SNP [dm6]	G	A	3.355e^-4	0.87	INTRON CG11380
X	1089108	X_1089108_SNP [dm3] X_1195075_SNP [dm6]	A	G	3.355e^-4	0.87	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1089114	X_1089114_SNP [dm3] X_1195081_SNP [dm6]	G	C	3.355e^-4	0.87	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1092971	X_1092971_SNP [dm3] X_1198938_SNP [dm6]	C	T	3.355e^-4	0.87	UPSTREAM CG14625 INTERGENIC
X	1092991	X_1092991_INS [dm3] X_1198958_INS [dm6]	A	ATTGCATATCAGGAGGATT...	3.355e^-4	0.87	UPSTREAM CG14625 INTERGENIC
3L	15430166	3L_15430166_SNP [dm3] 3L_15437066_SNP [dm6]	T	A	3.361e^-4	0.87	UPSTREAM CR43625 INTERGENIC
3L	19021132	3L_19021132_DEL [dm3] 3L_19028032_DEL [dm6]	CATTAC	C	3.374e^-4	0.87	INTRON nkd
2R	11817318	2R_11817318_DEL [dm3] 2R_15929813_DEL [dm6]	GA	G	3.375e^-4	0.87	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17392841	2R_17392841_SNP [dm3] 2R_21505336_SNP [dm6]	C	T	3.392e^-4	0.87	UPSTREAM MESK2 INTRON MESK2
2L	15015786	2L_15015786_SNP [dm3] 2L_15015786_SNP [dm6]	C	G	3.392e^-4	0.87	UPSTREAM GABA-B-R1 INTERGENIC
2R	11865897	2R_11865897_SNP [dm3] 2R_15978392_SNP [dm6]	T	A	3.400e^-4	0.87	NON_SYNONYMOUS_CODING Strn-Mlck
2L	10855987	2L_10855987_SNP [dm3] 2L_10855987_SNP [dm6]	A	G	3.404e^-4	0.87	SYNONYMOUS_CODING Dnz1 DOWNSTREAM ial	TF binding site mE1_TFBS_cad
2L	6923067	2L_6923067_SNP [dm3] 2L_6923067_SNP [dm6]	A	G	3.405e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25971431	3R_25971431_DEL [dm3] 3R_30145709_DEL [dm6]	AT	A	3.405e^-4	0.87	INTRON AdoR
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	3.409e^-4	0.87	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4121516	2L_4121516_SNP [dm3] 2L_4121516_SNP [dm6]	T	G	3.412e^-4	0.87	UTR_3_PRIME Sr-CIII UPSTREAM Sr-CI
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	3.419e^-4	0.87	INTRON CG4168
2L	9827329	2L_9827329_DEL [dm3] 2L_9827329_DEL [dm6]	CA	T	3.428e^-4	0.87	INTRON nAChRalpha6
3L	16075561	3L_16075561_SNP [dm3] 3L_16082461_SNP [dm6]	C	T	3.435e^-4	0.87	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	16412338	2L_16412338_SNP [dm3] 2L_16412338_SNP [dm6]	T	C	3.467e^-4	0.87	INTRON CG5888	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	10349332	X_10349332_SNP [dm3] X_10455299_SNP [dm6]	G	A	3.474e^-4	0.87	UPSTREAM CG32683 INTERGENIC
3R	8154288	3R_8154288_SNP [dm3] 3R_12328566_SNP [dm6]	T	A	3.493e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2L	19438252	2L_19438252_SNP [dm3] 2L_19438252_SNP [dm6]	T	G	3.503e^-4	0.87	INTRON CG10237
2L	9847430	2L_9847430_SNP [dm3] 2L_9847430_SNP [dm6]	T	C	3.521e^-4	0.87	UPSTREAM CR43766 INTRON nAChRalpha6
3L	15050854	3L_15050854_SNP [dm3] 3L_15057754_SNP [dm6]	A	G	3.558e^-4	0.87	INTRON Sytbeta
3R	8153863	3R_8153863_SNP [dm3] 3R_12328141_SNP [dm6]	C	G	3.591e^-4	0.87	DOWNSTREAM CR45584 INTERGENIC
3R	20260972	3R_20260972_SNP [dm3] 3R_24435250_SNP [dm6]	C	A	3.601e^-4	0.87	INTRON nAChRalpha1
3R	20260997	3R_20260997_SNP [dm3] 3R_24435275_SNP [dm6]	G	C	3.601e^-4	0.87	INTRON nAChRalpha1
2R	3464352	2R_3464352_SNP [dm3] 2R_7576847_SNP [dm6]	G	A	3.602e^-4	0.87	INTRON Vps13
2R	3464369	2R_3464369_SNP [dm3] 2R_7576864_SNP [dm6]	C	G	3.602e^-4	0.87	INTRON Vps13
3L	2681321	3L_2681321_SNP [dm3] 3L_2681321_SNP [dm6]	A	T	3.604e^-4	0.87	INTRON Fife
3L	21404339	3L_21404339_SNP [dm3] 3L_21411239_SNP [dm6]	G	A	3.610e^-4	0.87	INTRON rgn
2L	12619172	2L_12619172_SNP [dm3] 2L_12619172_SNP [dm6]	C	T	3.612e^-4	0.87	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	13863104	2L_13863104_SNP [dm3] 2L_13863104_SNP [dm6]	A	G	3.625e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13863197	2L_13863197_SNP [dm3] 2L_13863197_SNP [dm6]	A	C	3.625e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13863210	2L_13863210_SNP [dm3] 2L_13863210_SNP [dm6]	A	G	3.625e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13863215	2L_13863215_SNP [dm3] 2L_13863215_SNP [dm6]	A	G	3.625e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13863216	2L_13863216_SNP [dm3] 2L_13863216_SNP [dm6]	T	C	3.625e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	9017367	2L_9017367_SNP [dm3] 2L_9017367_SNP [dm6]	G	T	3.632e^-4	0.87	INTERGENIC
2L	9017571	2L_9017571_INS [dm3] 2L_9017571_INS [dm6]	A	ATGTA	3.632e^-4	0.87	INTERGENIC
2R	1250780	2R_1250780_SNP [dm3] 2R_5363275_SNP [dm6]	T	C	3.643e^-4	0.87	UPSTREAM CG10417 EXON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2360312	3R_2360312_SNP [dm3] 3R_6534590_SNP [dm6]	G	T	3.647e^-4	0.87	INTRON dpr11	TF binding site BDTNP1_TFBS_slp1
3R	8413728	3R_8413728_SNP [dm3] 3R_12588006_SNP [dm6]	A	T	3.648e^-4	0.87	INTRON Octbeta2R
3R	8186438	3R_8186438_SNP [dm3] 3R_12360716_SNP [dm6]	G	A	3.650e^-4	0.87	INTRON CG4115
X	10349091	X_10349091_SNP [dm3] X_10455058_SNP [dm6]	T	G	3.657e^-4	0.87	UPSTREAM CG32683 INTERGENIC
3L	20809670	3L_20809670_SNP [dm3] 3L_20816570_SNP [dm6]	G	A	3.661e^-4	0.87	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6040953	3R_6040953_SNP [dm3] 3R_10215231_SNP [dm6]	A	C	3.666e^-4	0.87	INTRON Syn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16412374	2L_16412374_SNP [dm3] 2L_16412374_SNP [dm6]	T	A	3.669e^-4	0.87	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16241794	2R_16241794_SNP [dm3] 2R_20354289_SNP [dm6]	G	A	3.672e^-4	0.87	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
2R	16408926	2R_16408926_SNP [dm3] 2R_20521421_SNP [dm6]	G	T	3.678e^-4	0.87	INTERGENIC
3L	18163959	3L_18163959_SNP [dm3] 3L_18170859_SNP [dm6]	C	T	3.686e^-4	0.87	INTRON W
3R	13036592	3R_13036592_SNP [dm3] 3R_17210870_SNP [dm6]	C	A	3.693e^-4	0.87	INTERGENIC
3R	13036633	3R_13036633_SNP [dm3] 3R_17210911_SNP [dm6]	T	C	3.693e^-4	0.87	INTERGENIC
X	1102042	X_1102042_SNP [dm3] X_1208009_SNP [dm6]	A	C	3.694e^-4	0.87	DOWNSTREAM CG14624 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11550934	3L_11550934_SNP [dm3] 3L_11557834_SNP [dm6]	A	G	3.722e^-4	0.87	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11313715	3L_11313715_SNP [dm3] 3L_11320615_SNP [dm6]	C	T	3.723e^-4	0.87	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
2R	9808604	2R_9808604_DEL [dm3] 2R_13921099_DEL [dm6]	TTCAACT	T	3.724e^-4	0.87	INTRON shot
2R	10135841	2R_10135841_SNP [dm3] 2R_14248336_SNP [dm6]	A	G	3.726e^-4	0.87	SYNONYMOUS_CODING Mdr50
2L	10671146	2L_10671146_SNP [dm3] 2L_10671146_SNP [dm6]	T	C	3.759e^-4	0.87	SYNONYMOUS_CODING CG31871	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12109933	X_12109933_SNP [dm3] X_12215900_SNP [dm6]	C	T	3.765e^-4	0.87	INTRON Ten-a
X	15209320	X_15209320_SNP [dm3] X_15315287_SNP [dm6]	A	T	3.768e^-4	0.87	INTRON gce EXON CR44961
3L	16808262	3L_16808262_DEL [dm3] 3L_16815162_DEL [dm6]	AGGAGCCAA	A	3.798e^-4	0.87	INTRON nudC & 1 other
3L	12579433	3L_12579433_SNP [dm3] 3L_12586333_SNP [dm6]	A	G	3.829e^-4	0.87	INTRON ara
2L	12405439	2L_12405439_SNP [dm3] 2L_12405439_SNP [dm6]	T	C	3.845e^-4	0.87	UPSTREAM vir-1 INTRON vir-1
3R	14723006	3R_14723006_SNP [dm3] 3R_18897284_SNP [dm6]	T	A	3.856e^-4	0.87	UPSTREAM CG14297 INTERGENIC
3R	19068672	3R_19068672_SNP [dm3] 3R_23242950_SNP [dm6]	T	G	3.856e^-4	0.87	INTRON CG4467
3R	23931729	3R_23931729_SNP [dm3] 3R_28106007_SNP [dm6]	G	A	3.858e^-4	0.87	INTERGENIC
3R	19742845	3R_19742845_SNP [dm3] 3R_23917123_SNP [dm6]	G	A	3.865e^-4	0.87	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19742848	3R_19742848_SNP [dm3] 3R_23917126_SNP [dm6]	C	T	3.865e^-4	0.87	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3112577	3L_3112577_SNP [dm3] 3L_3112577_SNP [dm6]	T	A	3.878e^-4	0.87	INTRON CG45067
3L	21261080	3L_21261080_SNP [dm3] 3L_21267980_SNP [dm6]	A	T	3.888e^-4	0.87	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391	TF binding site mE1_TFBS_cad
3R	9902789	3R_9902789_SNP [dm3] 3R_14077067_SNP [dm6]	A	T	3.898e^-4	0.87	INTRON foxo
X	3209717	X_3209717_SNP [dm3] X_3315684_SNP [dm6]	T	C	3.911e^-4	0.87	SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
X	14307955	X_14307955_SNP [dm3] X_14413922_SNP [dm6]	G	A	3.936e^-4	0.87	INTRON dpr8
X	14307963	X_14307963_SNP [dm3] X_14413930_SNP [dm6]	A	G	3.936e^-4	0.87	INTRON dpr8
3R	2372303	3R_2372303_SNP [dm3] 3R_6546581_SNP [dm6]	G	A	3.981e^-4	0.87	INTRON dpr11
2L	1999704	2L_1999704_SNP [dm3] 2L_1999704_SNP [dm6]	T	A	3.981e^-4	0.87	UPSTREAM CR43464 INTRON CG33543
X	12110022	X_12110022_SNP [dm3] X_12215989_SNP [dm6]	A	C	3.992e^-4	0.87	INTRON Ten-a
3L	12579429	3L_12579429_SNP [dm3] 3L_12586329_SNP [dm6]	A	C	3.995e^-4	0.87	INTRON ara
2R	18037109	2R_18037109_SNP [dm3] 2R_22149604_SNP [dm6]	A	C	3.999e^-4	0.87	INTRON a
3R	11861202	3R_11861202_SNP [dm3] 3R_16035480_SNP [dm6]	A	G	4.002e^-4	0.87	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2R	11468417	2R_11468417_SNP [dm3] 2R_15580912_SNP [dm6]	G	C	4.005e^-4	0.87	INTERGENIC
X	11141746	X_11141746_SNP [dm3] X_11247713_SNP [dm6]	G	A	4.015e^-4	0.87	UPSTREAM CG15198 INTRON CG44422
2L	12679916	2L_12679916_SNP [dm3] 2L_12679916_SNP [dm6]	C	G	4.019e^-4	0.87	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14563304	2R_14563304_SNP [dm3] 2R_18675799_SNP [dm6]	T	A	4.020e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6823091	3R_6823091_SNP [dm3] 3R_10997369_SNP [dm6]	T	C	4.034e^-4	0.87	INTRON CG34114
3R	19069819	3R_19069819_SNP [dm3] 3R_23244097_SNP [dm6]	A	T	4.039e^-4	0.87	INTRON CG4467
3R	20935638	3R_20935638_SNP [dm3] 3R_25109916_SNP [dm6]	C	T	4.048e^-4	0.87	SPLICE_SITE_REGION CG13650 UPSTREAM CG34027 INTRON CG13650
X	7210234	X_7210234_DEL [dm3] X_7316201_DEL [dm6]	TAT	T	4.053e^-4	0.87	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl
2L	9860667	2L_9860667_SNP [dm3] 2L_9860667_SNP [dm6]	T	C	4.079e^-4	0.87	INTRON nAChRalpha6
2L	9513551	2L_9513551_SNP [dm3] 2L_9513551_SNP [dm6]	T	G	4.087e^-4	0.87	INTRON CG33298
2L	16412303	2L_16412303_SNP [dm3] 2L_16412303_SNP [dm6]	C	T	4.088e^-4	0.87	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13103413	3R_13103413_SNP [dm3] 3R_17277691_SNP [dm6]	A	G	4.104e^-4	0.87	INTERGENIC
3L	2958267	3L_2958267_SNP [dm3] 3L_2958267_SNP [dm6]	C	A	4.117e^-4	0.87	UTR_3_PRIME Shab
X	6103659	X_6103659_SNP [dm3] X_6209626_SNP [dm6]	A	G	4.119e^-4	0.87	INTERGENIC
2L	6920403	2L_6920403_SNP [dm3] 2L_6920403_SNP [dm6]	C	A	4.124e^-4	0.87	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	9193363	X_9193363_SNP [dm3] X_9299330_SNP [dm6]	G	A	4.126e^-4	0.87	INTRON lz
X	14760418	X_14760418_SNP [dm3] X_14866385_SNP [dm6]	A	G	4.155e^-4	0.87	UTR_5_PRIME CG9518 INTRON Flo2
3L	10749972	3L_10749972_SNP [dm3] 3L_10756872_SNP [dm6]	G	A	4.166e^-4	0.87	INTERGENIC
3L	9970757	3L_9970757_SNP [dm3] 3L_9977657_SNP [dm6]	A	G	4.169e^-4	0.87	INTRON dpr6
2R	1249260	2R_1249260_SNP [dm3] 2R_5361755_SNP [dm6]	T	G	4.190e^-4	0.87	SYNONYMOUS_CODING CG10417	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	17221391	3L_17221391_SNP [dm3] 3L_17228291_SNP [dm6]	T	A	4.193e^-4	0.87	INTRON Rbp6
3L	18887212	3L_18887212_SNP [dm3] 3L_18894112_SNP [dm6]	G	A	4.217e^-4	0.87	DOWNSTREAM NijB INTRON CG3902
3R	16315679	3R_16315679_SNP [dm3] 3R_20489957_SNP [dm6]	G	A	4.218e^-4	0.87	INTERGENIC
3R	16315699	3R_16315699_SNP [dm3] 3R_20489977_SNP [dm6]	A	G	4.218e^-4	0.87	INTERGENIC
X	7636074	X_7636074_SNP [dm3] X_7742041_SNP [dm6]	A	G	4.221e^-4	0.87	INTERGENIC
3L	12804091	3L_12804091_SNP [dm3] 3L_12810991_SNP [dm6]	A	G	4.251e^-4	0.87	SYNONYMOUS_CODING Sap130 DOWNSTREAM CG32110	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8709649	3L_8709649_SNP [dm3] 3L_8716549_SNP [dm6]	G	A	4.275e^-4	0.87	INTERGENIC
2R	9494671	2R_9494671_SNP [dm3] 2R_13607166_SNP [dm6]	A	G	4.280e^-4	0.87	INTERGENIC
2R	19573293	2R_19573293_DEL [dm3] 2R_23685770_DEL [dm6]	CTCA	C	4.287e^-4	0.87	UPSTREAM l_2_efl INTRON St3
2R	17564481	2R_17564481_SNP [dm3] 2R_21676976_SNP [dm6]	G	A	4.289e^-4	0.87	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20084583	2R_20084583_SNP [dm3] 2R_24197060_SNP [dm6]	A	G	4.298e^-4	0.87	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC
2R	17946522	2R_17946522_SNP [dm3] 2R_22059017_SNP [dm6]	C	T	4.304e^-4	0.87	UTR_3_PRIME CG13501	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17946550	2R_17946550_SNP [dm3] 2R_22059045_SNP [dm6]	C	A	4.304e^-4	0.87	UTR_3_PRIME CG13501	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18487216	3R_18487216_SNP [dm3] 3R_22661494_SNP [dm6]	C	G	4.306e^-4	0.87	INTRON CG45058
X	1093016	X_1093016_DEL [dm3] X_1198983_DEL [dm6]	TCC	GT	4.335e^-4	0.87	UPSTREAM CG14625 INTERGENIC
X	1093032	X_1093032_SNP [dm3] X_1198999_SNP [dm6]	G	C	4.335e^-4	0.87	UPSTREAM CG14625 INTERGENIC
2L	6922537	2L_6922537_SNP [dm3] 2L_6922537_SNP [dm6]	A	T	4.340e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	19188835	2L_19188835_DEL [dm3] 2L_19188835_DEL [dm6]	ATAT	A	4.351e^-4	0.87	INTRON pigeon
X	1086353	X_1086353_SNP [dm3] X_1192320_SNP [dm6]	G	A	4.382e^-4	0.87	INTRON CG11380
3R	25985427	3R_25985427_SNP [dm3] 3R_30159705_SNP [dm6]	C	A	4.387e^-4	0.87	INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17293338	2R_17293338_SNP [dm3] 2R_21405833_SNP [dm6]	A	C	4.394e^-4	0.87	INTRON Sdc
3R	26090100	3R_26090100_DEL [dm3] 3R_30264378_DEL [dm6]	ACCGC	A	4.408e^-4	0.87	INTERGENIC
2L	18152209	2L_18152209_SNP [dm3] 2L_18152209_SNP [dm6]	A	T	4.413e^-4	0.87	SPLICE_SITE_REGION Socs36E UTR_5_PRIME Socs36E UPSTREAM CG17681	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	13912761	3R_13912761_SNP [dm3] 3R_18087039_SNP [dm6]	A	G	4.446e^-4	0.87	INTERGENIC
2L	14324707	2L_14324707_SNP [dm3] 2L_14324707_SNP [dm6]	A	T	4.469e^-4	0.87	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	10486133	3L_10486133_SNP [dm3] 3L_10493033_SNP [dm6]	T	C	4.469e^-4	0.87	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10997903	2R_10997903_SNP [dm3] 2R_15110398_SNP [dm6]	A	T	4.481e^-4	0.87	INTERGENIC
X	15451705	X_15451705_SNP [dm3] X_15557672_SNP [dm6]	C	T	4.505e^-4	0.87	INTERGENIC
X	3209582	X_3209582_SNP [dm3] X_3315549_SNP [dm6]	C	G	4.534e^-4	0.87	SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
2L	18141534	2L_18141534_SNP [dm3] 2L_18141534_SNP [dm6]	A	G	4.538e^-4	0.87	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9350092	2L_9350092_SNP [dm3] 2L_9350092_SNP [dm6]	G	A	4.555e^-4	0.87	UPSTREAM CR44802 & 1 other DOWNSTREAM CG43350 INTERGENIC
2R	7007374	2R_7007374_SNP [dm3] 2R_11119869_SNP [dm6]	C	T	4.558e^-4	0.87	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
3L	13945408	3L_13945408_SNP [dm3] 3L_13952308_SNP [dm6]	C	T	4.558e^-4	0.87	INTRON CG32137
3R	15567462	3R_15567462_SNP [dm3] 3R_19741740_SNP [dm6]	A	C	4.568e^-4	0.87	INTRON GluClalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19188812	2L_19188812_SNP [dm3] 2L_19188812_SNP [dm6]	A	T	4.571e^-4	0.87	SPLICE_SITE_REGION pigeon INTRON pigeon
2R	6698206	2R_6698206_SNP [dm3] 2R_10810701_SNP [dm6]	C	T	4.573e^-4	0.87	SYNONYMOUS_CODING CG7637 UPSTREAM mms4 DOWNSTREAM CG12935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2145450	2L_2145450_SNP [dm3] 2L_2145450_SNP [dm6]	G	A	4.577e^-4	0.87	UTR_3_PRIME CG11723 UPSTREAM tho2 DOWNSTREAM CG11723	TF binding site BDTNP1_TFBS_dl
2L	18324698	2L_18324698_SNP [dm3] 2L_18324698_SNP [dm6]	T	A	4.605e^-4	0.87	INTRON Fas3
2L	2690833	2L_2690833_SNP [dm3] 2L_2690833_SNP [dm6]	G	A	4.615e^-4	0.87	INTRON CG31690
3L	705285	3L_705285_SNP [dm3] 3L_705285_SNP [dm6]	T	C	4.621e^-4	0.87	UPSTREAM CR44514 DOWNSTREAM CG13895 INTERGENIC
2R	9494619	2R_9494619_SNP [dm3] 2R_13607114_SNP [dm6]	T	C	4.641e^-4	0.87	INTERGENIC
X	15450923	X_15450923_SNP [dm3] X_15556890_SNP [dm6]	A	G	4.668e^-4	0.87	UPSTREAM CG42300 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10543000	2R_10543000_SNP [dm3] 2R_14655495_SNP [dm6]	C	T	4.676e^-4	0.87	INTERGENIC
2R	10543012	2R_10543012_SNP [dm3] 2R_14655507_SNP [dm6]	G	T	4.676e^-4	0.87	INTERGENIC
X	5523889	X_5523889_SNP [dm3] X_5629856_SNP [dm6]	T	A	4.677e^-4	0.87	INTRON CG42492	TF binding site mE1_TFBS_chinmo
2R	8562807	2R_8562807_SNP [dm3] 2R_12675302_SNP [dm6]	T	G	4.679e^-4	0.87	SYNONYMOUS_CODING CG42708 UPSTREAM CG42708 INTRON CG42708
3R	8154053	3R_8154053_SNP [dm3] 3R_12328331_SNP [dm6]	C	T	4.690e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3R	8154174	3R_8154174_SNP [dm3] 3R_12328452_SNP [dm6]	T	C	4.690e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3R	2502213	3R_2502213_DEL [dm3] 3R_6676491_DEL [dm6]	AGAGAACTATA...	A	4.700e^-4	0.87	INTRON lab	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	3099096	X_3099096_SNP [dm3] X_3205063_SNP [dm6]	A	G	4.707e^-4	0.87	INTRON dnc	TF binding site mE1_TFBS_inv
3R	17143740	3R_17143740_SNP [dm3] 3R_21318018_SNP [dm6]	T	C	4.740e^-4	0.87	DOWNSTREAM CG16791 & 1 other INTERGENIC
2L	9017355	2L_9017355_SNP [dm3] 2L_9017355_SNP [dm6]	G	A	4.775e^-4	0.87	INTERGENIC
2L	9513736	2L_9513736_SNP [dm3] 2L_9513736_SNP [dm6]	G	A	4.780e^-4	0.87	INTRON CG33298
3L	14319220	3L_14319220_SNP [dm3] 3L_14326120_SNP [dm6]	A	C	4.795e^-4	0.87	INTRON fz EXON CR45025
2R	17673317	2R_17673317_SNP [dm3] 2R_21785812_SNP [dm6]	G	A	4.795e^-4	0.87	INTERGENIC
2R	6987337	2R_6987337_SNP [dm3] 2R_11099832_SNP [dm6]	T	C	4.800e^-4	0.87	START_GAINED luna UTR_5_PRIME luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16870352	2R_16870352_SNP [dm3] 2R_20982847_SNP [dm6]	A	G	4.811e^-4	0.87	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651	TF binding site mE1_TFBS_cad
3L	9020797	3L_9020797_INS [dm3] 3L_9027697_INS [dm6]	G	GC	4.817e^-4	0.87	INTERGENIC
2L	14349950	2L_14349950_SNP [dm3] 2L_14349950_SNP [dm6]	C	T	4.862e^-4	0.87	DOWNSTREAM CR44850 INTRON l_2_34Fc
3L	10798219	3L_10798219_SNP [dm3] 3L_10805119_SNP [dm6]	G	A	4.865e^-4	0.87	DOWNSTREAM CR44347 EXON CR44347
3L	15017480	3L_15017480_SNP [dm3] 3L_15024380_SNP [dm6]	T	A	4.874e^-4	0.87	DOWNSTREAM CG32148 INTRON Sytbeta
3L	2533939	3L_2533939_SNP [dm3] 3L_2533939_SNP [dm6]	C	T	4.881e^-4	0.87	INTRON Spn
3L	12064837	3L_12064837_SNP [dm3] 3L_12071737_SNP [dm6]	G	T	4.886e^-4	0.87	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1286104	2R_1286104_SNP [dm3] 2R_5398599_SNP [dm6]	C	T	4.891e^-4	0.87	INTERGENIC
2L	20465975	2L_20465975_DEL [dm3] 2L_20465975_DEL [dm6]	AGGGTTTGA	A	4.896e^-4	0.87	INTRON CR44980
3L	10881097	3L_10881097_SNP [dm3] 3L_10887997_SNP [dm6]	C	T	4.897e^-4	0.87	INTERGENIC
2L	9017642	2L_9017642_SNP [dm3] 2L_9017642_SNP [dm6]	T	G	4.898e^-4	0.87	INTERGENIC
3L	12579420	3L_12579420_SNP [dm3] 3L_12586320_SNP [dm6]	G	T	4.909e^-4	0.87	INTRON ara
2R	10997380	2R_10997380_SNP [dm3] 2R_15109875_SNP [dm6]	A	T	4.910e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12021185	2L_12021185_SNP [dm3] 2L_12021185_SNP [dm6]	C	A	4.916e^-4	0.87	UPSTREAM CG6734 INTERGENIC
X	9798456	X_9798456_SNP [dm3] X_9904423_SNP [dm6]	A	T	4.916e^-4	0.87	INTERGENIC
3L	11187410	3L_11187410_SNP [dm3] 3L_11194310_SNP [dm6]	G	T	4.916e^-4	0.87	INTRON GlcAT-P
2R	17930822	2R_17930822_SNP [dm3] 2R_22043317_SNP [dm6]	C	T	4.922e^-4	0.87	UPSTREAM PpD5 INTERGENIC
2R	17930849	2R_17930849_SNP [dm3] 2R_22043344_SNP [dm6]	C	A	4.922e^-4	0.87	UPSTREAM PpD5 INTERGENIC
2R	17930864	2R_17930864_SNP [dm3] 2R_22043359_SNP [dm6]	A	G	4.922e^-4	0.87	UPSTREAM PpD5 INTERGENIC
3R	26634537	3R_26634537_SNP [dm3] 3R_30808815_SNP [dm6]	C	G	4.922e^-4	0.87	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
X	17315603	X_17315603_SNP [dm3] X_17421570_SNP [dm6]	T	G	4.931e^-4	0.87	SYNONYMOUS_CODING CG8611 DOWNSTREAM CG12994	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	20974957	3R_20974957_SNP [dm3] 3R_25149235_SNP [dm6]	T	G	4.933e^-4	0.87	INTERGENIC
3R	20974961	3R_20974961_SNP [dm3] 3R_25149239_SNP [dm6]	G	T	4.933e^-4	0.87	INTERGENIC
2L	6919730	2L_6919730_SNP [dm3] 2L_6919730_SNP [dm6]	C	T	4.965e^-4	0.87	SYNONYMOUS_CODING x16 UPSTREAM nop5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	4.968e^-4	0.87	INTRON Cad87A
3L	12617544	3L_12617544_SNP [dm3] 3L_12624444_SNP [dm6]	T	C	4.978e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6439834	3L_6439834_SNP [dm3] 3L_6446734_SNP [dm6]	T	G	4.990e^-4	0.87	INTRON CG42747
2L	12619259	2L_12619259_SNP [dm3] 2L_12619259_SNP [dm6]	A	T	5.005e^-4	0.87	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	23286919	3R_23286919_SNP [dm3] 3R_27461197_SNP [dm6]	G	A	5.030e^-4	0.87	INTERGENIC
3R	16898224	3R_16898224_SNP [dm3] 3R_21072502_SNP [dm6]	G	C	5.067e^-4	0.87	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16898290	3R_16898290_SNP [dm3] 3R_21072568_SNP [dm6]	C	G	5.067e^-4	0.87	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9544121	3R_9544121_INS [dm3] 3R_13718399_INS [dm6]	A	AA	5.067e^-4	0.87	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16013023	2R_16013023_SNP [dm3] 2R_20125518_SNP [dm6]	T	C	5.080e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6533014	2L_6533014_SNP [dm3] 2L_6533014_SNP [dm6]	T	G	5.081e^-4	0.87	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13481764	2R_13481764_SNP [dm3] 2R_17594259_SNP [dm6]	T	A	5.084e^-4	0.87	INTRON lack	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12544352	3L_12544352_SNP [dm3] 3L_12551252_SNP [dm6]	C	T	5.088e^-4	0.87	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21711741	3L_21711741_INS [dm3] 3L_21718641_INS [dm6]	A	ACAACGACACTAAAGTTTTA...	5.097e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	10219697	3L_10219697_SNP [dm3] 3L_10226597_SNP [dm6]	C	A	5.122e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14423320	X_14423320_SNP [dm3] X_14529287_SNP [dm6]	T	A	5.127e^-4	0.87	INTERGENIC
X	4512548	X_4512548_SNP [dm3] X_4618515_SNP [dm6]	A	T	5.141e^-4	0.87	INTRON peb	TF binding site BDTNP1_TFBS_dl
2L	3786208	2L_3786208_SNP [dm3] 2L_3786208_SNP [dm6]	C	G	5.142e^-4	0.87	SYNONYMOUS_CODING CG31958 UPSTREAM CG3921 DOWNSTREAM CG31960	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	15348229	3R_15348229_INS [dm3] 3R_19522507_INS [dm6]	A	AA	5.157e^-4	0.87	INTRON Dys
3L	4269221	3L_4269221_SNP [dm3] 3L_4269221_SNP [dm6]	G	T	5.176e^-4	0.87	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18590885	3R_18590885_SNP [dm3] 3R_22765163_SNP [dm6]	G	A	5.180e^-4	0.87	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2884587	3L_2884587_SNP [dm3] 3L_2884587_SNP [dm6]	C	T	5.188e^-4	0.87	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17641534	3R_17641534_DEL [dm3] 3R_21815812_DEL [dm6]	AA	A	5.208e^-4	0.87	INTRON CASK	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4795700	2L_4795700_SNP [dm3] 2L_4795700_SNP [dm6]	T	A	5.210e^-4	0.87	DOWNSTREAM Clect27 INTRON CG3294
2L	16047434	2L_16047434_SNP [dm3] 2L_16047434_SNP [dm6]	A	G	5.215e^-4	0.87	SYNONYMOUS_CODING BicC UTR_3_PRIME CG45084	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13478681	2R_13478681_SNP [dm3] 2R_17591176_SNP [dm6]	T	C	5.219e^-4	0.87	UPSTREAM RhoGAP54D DOWNSTREAM CG30105 INTRON icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13478689	2R_13478689_SNP [dm3] 2R_17591184_SNP [dm6]	A	T	5.219e^-4	0.87	UPSTREAM RhoGAP54D DOWNSTREAM CG30105 INTRON icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19701002	2R_19701002_SNP [dm3] 2R_23813479_SNP [dm6]	G	A	5.224e^-4	0.87	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2R	19924180	2R_19924180_SNP [dm3] 2R_24036657_SNP [dm6]	C	A	5.234e^-4	0.87	UTR_3_PRIME MAN1 DOWNSTREAM Not11	TF binding site mE1_TFBS_HSA
3L	3132888	3L_3132888_SNP [dm3] 3L_3132888_SNP [dm6]	G	A	5.238e^-4	0.87	SYNONYMOUS_CODING CG11537 INTRON CG11537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17226321	3L_17226321_SNP [dm3] 3L_17233221_SNP [dm6]	G	A	5.245e^-4	0.87	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2L	4002318	2L_4002318_DEL [dm3] 2L_4002318_DEL [dm6]	TG	T	5.246e^-4	0.87	DOWNSTREAM CR45344 INTERGENIC
2L	2520832	2L_2520832_SNP [dm3] 2L_2520832_SNP [dm6]	G	A	5.262e^-4	0.87	INTERGENIC
3R	27190579	3R_27190579_SNP [dm3] 3R_31364857_SNP [dm6]	T	G	5.265e^-4	0.87	INTRON CG34347
2L	8714927	2L_8714927_SNP [dm3] 2L_8714927_SNP [dm6]	C	T	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	8714928	2L_8714928_SNP [dm3] 2L_8714928_SNP [dm6]	T	G	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	8714933	2L_8714933_SNP [dm3] 2L_8714933_SNP [dm6]	A	C	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	8714938	2L_8714938_SNP [dm3] 2L_8714938_SNP [dm6]	A	C	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	8714941	2L_8714941_SNP [dm3] 2L_8714941_SNP [dm6]	T	C	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	8714943	2L_8714943_SNP [dm3] 2L_8714943_SNP [dm6]	A	T	5.276e^-4	0.87	UPSTREAM raw INTRON raw
2L	12797333	2L_12797333_SNP [dm3] 2L_12797333_SNP [dm6]	C	A	5.283e^-4	0.87	INTERGENIC
3L	9965705	3L_9965705_SNP [dm3] 3L_9972605_SNP [dm6]	G	A	5.292e^-4	0.87	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8413724	3R_8413724_SNP [dm3] 3R_12588002_SNP [dm6]	C	T	5.304e^-4	0.87	INTRON Octbeta2R
3L	1474530	3L_1474530_INS [dm3] 3L_1474530_INS [dm6]	C	CCCCATT	5.312e^-4	0.87	DOWNSTREAM stet INTRON Ptp61F
X	14791907	X_14791907_SNP [dm3] X_14897874_SNP [dm6]	A	T	5.339e^-4	0.87	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14791931	X_14791931_SNP [dm3] X_14897898_SNP [dm6]	A	G	5.339e^-4	0.87	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14791934	X_14791934_SNP [dm3] X_14897901_SNP [dm6]	T	C	5.339e^-4	0.87	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7069128	2L_7069128_SNP [dm3] 2L_7069128_SNP [dm6]	C	A	5.341e^-4	0.87	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
2L	7069171	2L_7069171_SNP [dm3] 2L_7069171_SNP [dm6]	C	T	5.341e^-4	0.87	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
2R	9494642	2R_9494642_SNP [dm3] 2R_13607137_SNP [dm6]	A	C	5.344e^-4	0.87	INTERGENIC
3L	9227105	3L_9227105_SNP [dm3] 3L_9234005_SNP [dm6]	G	T	5.362e^-4	0.87	INTERGENIC
3L	16755288	3L_16755288_SNP [dm3] 3L_16762188_SNP [dm6]	T	C	5.365e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9513733	2L_9513733_SNP [dm3] 2L_9513733_SNP [dm6]	G	A	5.372e^-4	0.87	INTRON CG33298
3L	10432465	3L_10432465_SNP [dm3] 3L_10439365_SNP [dm6]	C	A	5.376e^-4	0.87	INTERGENIC
2R	19398084	2R_19398084_SNP [dm3] 2R_23510561_SNP [dm6]	G	A	5.384e^-4	0.87	DOWNSTREAM CG3906 INTERGENIC
2R	19398102	2R_19398102_SNP [dm3] 2R_23510579_SNP [dm6]	G	C	5.384e^-4	0.87	DOWNSTREAM CG3906 INTERGENIC
3L	10564670	3L_10564670_SNP [dm3] 3L_10571570_SNP [dm6]	G	C	5.388e^-4	0.87	INTRON A2bp1
3L	7591573	3L_7591573_SNP [dm3] 3L_7598473_SNP [dm6]	A	T	5.389e^-4	0.87	INTRON CG33275
3R	18787279	3R_18787279_SNP [dm3] 3R_22961557_SNP [dm6]	C	A	5.410e^-4	0.87	UTR_3_PRIME klg
2L	13863114	2L_13863114_SNP [dm3] 2L_13863114_SNP [dm6]	T	A	5.413e^-4	0.87	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21608860	3R_21608860_SNP [dm3] 3R_25783138_SNP [dm6]	A	C	5.453e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21608870	3R_21608870_DEL [dm3] 3R_25783148_DEL [dm6]	ATGGAA	A	5.453e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16268661	2R_16268661_SNP [dm3] 2R_20381156_SNP [dm6]	T	C	5.483e^-4	0.87	INTERGENIC
3L	2958256	3L_2958256_SNP [dm3] 3L_2958256_SNP [dm6]	C	G	5.488e^-4	0.87	UTR_3_PRIME Shab
3R	16367795	3R_16367795_SNP [dm3] 3R_20542073_SNP [dm6]	A	G	5.504e^-4	0.87	UTR_5_PRIME Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	13898015	3L_13898015_SNP [dm3] 3L_13904915_SNP [dm6]	A	C	5.592e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26285218	3R_26285218_SNP [dm3] 3R_30459496_SNP [dm6]	A	T	5.601e^-4	0.87	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9386201	3R_9386201_SNP [dm3] 3R_13560479_SNP [dm6]	T	A	5.602e^-4	0.87	INTERGENIC
X	5592960	X_5592960_SNP [dm3] X_5698927_SNP [dm6]	T	G	5.609e^-4	0.87	UTR_5_PRIME CG4096 UPSTREAM CG4096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4470515	2R_4470515_SNP [dm3] 2R_8583010_SNP [dm6]	T	G	5.636e^-4	0.87	INTRON CG42326
2L	13987180	2L_13987180_SNP [dm3] 2L_13987180_SNP [dm6]	T	G	5.640e^-4	0.87	INTRON rk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16064932	2L_16064932_SNP [dm3] 2L_16064932_SNP [dm6]	T	C	5.640e^-4	0.87	INTRON beat-Ia
X	7576115	X_7576115_SNP [dm3] X_7682082_SNP [dm6]	C	T	5.644e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	8713569	2L_8713569_SNP [dm3] 2L_8713569_SNP [dm6]	T	A	5.652e^-4	0.87	INTRON raw
3R	26241738	3R_26241738_SNP [dm3] 3R_30416016_SNP [dm6]	T	G	5.654e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4015777	2L_4015777_SNP [dm3] 2L_4015777_SNP [dm6]	T	C	5.666e^-4	0.87	INTERGENIC
2R	17293581	2R_17293581_DEL [dm3] 2R_21406076_DEL [dm6]	TTGACAAGCGTTTCAAT...	T	5.676e^-4	0.87	INTRON Sdc
3L	22586100	3L_22586100_SNP [dm3] 3L_22593000_SNP [dm6]	C	T	5.683e^-4	0.87	INTRON CG14459
2L	11092764	2L_11092764_SNP [dm3] 2L_11092764_SNP [dm6]	G	A	5.693e^-4	0.87	INTRON CG4705	TF binding site mE1_TFBS_HSA
3R	10528650	3R_10528650_SNP [dm3] 3R_14702928_SNP [dm6]	C	T	5.697e^-4	0.87	SYNONYMOUS_CODING kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	26090108	3R_26090108_SNP [dm3] 3R_30264386_SNP [dm6]	A	C	5.707e^-4	0.87	INTERGENIC
2L	11092711	2L_11092711_SNP [dm3] 2L_11092711_SNP [dm6]	A	G	5.712e^-4	0.87	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA
3R	1823751	3R_1823751_SNP [dm3] 3R_5998029_SNP [dm6]	G	C	5.736e^-4	0.87	INTERGENIC
3R	1867982	3R_1867982_SNP [dm3] 3R_6042260_SNP [dm6]	G	A	5.736e^-4	0.87	INTERGENIC
3R	8616185	3R_8616185_SNP [dm3] 3R_12790463_SNP [dm6]	G	T	5.736e^-4	0.87	INTERGENIC
3R	8616188	3R_8616188_INS [dm3] 3R_12790466_INS [dm6]	T	TTATAATTAATTATATAATT...	5.736e^-4	0.87	INTERGENIC
3L	3745888	3L_3745888_SNP [dm3] 3L_3745888_SNP [dm6]	C	A	5.740e^-4	0.87	UTR_5_PRIME CG32264 INTRON CG32264
2R	12704274	2R_12704274_SNP [dm3] 2R_16816769_SNP [dm6]	C	T	5.755e^-4	0.87	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417
3L	21730705	3L_21730705_SNP [dm3] 3L_21737605_SNP [dm6]	A	T	5.768e^-4	0.87	DOWNSTREAM CG14567 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13481591	2R_13481591_SNP [dm3] 2R_17594086_SNP [dm6]	C	A	5.788e^-4	0.87	INTRON lack	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5026490	3L_5026490_SNP [dm3] 3L_5026490_SNP [dm6]	T	A	5.789e^-4	0.87	INTRON Con
X	9025849	X_9025849_SNP [dm3] X_9131816_SNP [dm6]	C	G	5.793e^-4	0.87	INTRON fend	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
X	7639513	X_7639513_SNP [dm3] X_7745480_SNP [dm6]	T	A	5.794e^-4	0.87	INTERGENIC
2L	19188829	2L_19188829_SNP [dm3] 2L_19188829_SNP [dm6]	G	A	5.813e^-4	0.87	INTRON pigeon
2L	19188852	2L_19188852_SNP [dm3] 2L_19188852_SNP [dm6]	T	A	5.813e^-4	0.87	INTRON pigeon
2L	19188844	2L_19188844_DEL [dm3] 2L_19188844_DEL [dm6]	TCAT	G	5.843e^-4	0.87	INTRON pigeon
2L	12021195	2L_12021195_SNP [dm3] 2L_12021195_SNP [dm6]	T	A	5.845e^-4	0.87	UPSTREAM CG6734 INTERGENIC
2L	12021199	2L_12021199_SNP [dm3] 2L_12021199_SNP [dm6]	C	G	5.845e^-4	0.87	UPSTREAM CG6734 INTERGENIC
2L	12021222	2L_12021222_SNP [dm3] 2L_12021222_SNP [dm6]	G	A	5.845e^-4	0.87	UPSTREAM CG6734 INTERGENIC
2L	12021248	2L_12021248_SNP [dm3] 2L_12021248_SNP [dm6]	A	C	5.845e^-4	0.87	UPSTREAM CG6734 INTERGENIC
3R	17652546	3R_17652546_SNP [dm3] 3R_21826824_SNP [dm6]	A	G	5.852e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	4666422	3R_4666422_SNP [dm3] 3R_8840700_SNP [dm6]	A	T	5.855e^-4	0.87	INTRON pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4745137	3R_4745137_SNP [dm3] 3R_8919415_SNP [dm6]	G	A	5.855e^-4	0.87	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12715475	3L_12715475_SNP [dm3] 3L_12722375_SNP [dm6]	A	G	5.860e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6436967	2R_6436967_SNP [dm3] 2R_10549462_SNP [dm6]	T	A	5.870e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	7729142	X_7729142_SNP [dm3] X_7835109_SNP [dm6]	A	G	5.877e^-4	0.87	INTRON CG1402
3L	6266007	3L_6266007_SNP [dm3] 3L_6272907_SNP [dm6]	A	G	5.878e^-4	0.87	INTERGENIC
3R	18590904	3R_18590904_SNP [dm3] 3R_22765182_SNP [dm6]	C	T	5.896e^-4	0.87	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2960939	3L_2960939_SNP [dm3] 3L_2960939_SNP [dm6]	C	T	5.909e^-4	0.87	NON_SYNONYMOUS_CODING CG34025 UPSTREAM Or63a
3R	21009756	3R_21009756_SNP [dm3] 3R_25184034_SNP [dm6]	A	G	5.919e^-4	0.87	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10407196	3R_10407196_SNP [dm3] 3R_14581474_SNP [dm6]	C	A	5.922e^-4	0.87	INTRON stumps
2R	6556450	2R_6556450_SNP [dm3] 2R_10668945_SNP [dm6]	C	A	5.928e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13884240	3L_13884240_SNP [dm3] 3L_13891140_SNP [dm6]	T	C	5.936e^-4	0.87	INTRON dysc
2L	15285167	2L_15285167_SNP [dm3] 2L_15285167_SNP [dm6]	A	T	5.969e^-4	0.87	NON_SYNONYMOUS_CODING CG15263
2L	9350347	2L_9350347_SNP [dm3] 2L_9350347_SNP [dm6]	G	A	5.974e^-4	0.87	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
2R	10303555	2R_10303555_SNP [dm3] 2R_14416050_SNP [dm6]	C	G	5.976e^-4	0.87	INTERGENIC
2L	5095987	2L_5095987_SNP [dm3] 2L_5095987_SNP [dm6]	T	G	5.976e^-4	0.87	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_kn
2R	5069667	2R_5069667_SNP [dm3] 2R_9182162_SNP [dm6]	G	T	6.011e^-4	0.87	UPSTREAM ltd INTRON ltd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14940074	2R_14940074_SNP [dm3] 2R_19052569_SNP [dm6]	G	T	6.013e^-4	0.87	INTERGENIC
2L	19939138	2L_19939138_SNP [dm3] 2L_19939138_SNP [dm6]	T	A	6.039e^-4	0.87	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19398626	2R_19398626_SNP [dm3] 2R_23511103_SNP [dm6]	C	T	6.040e^-4	0.87	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10281575	2L_10281575_SNP [dm3] 2L_10281575_SNP [dm6]	G	T	6.042e^-4	0.87	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
2R	13481634	2R_13481634_SNP [dm3] 2R_17594129_SNP [dm6]	A	G	6.046e^-4	0.87	INTRON lack	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17629271	3L_17629271_SNP [dm3] 3L_17636171_SNP [dm6]	T	C	6.076e^-4	0.87	INTRON CG7497
X	14371541	X_14371541_SNP [dm3] X_14477508_SNP [dm6]	A	G	6.113e^-4	0.87	INTRON CG9411
X	4381558	X_4381558_SNP [dm3] X_4487525_SNP [dm6]	T	G	6.118e^-4	0.87	INTRON CR32773
3R	25986418	3R_25986418_SNP [dm3] 3R_30160696_SNP [dm6]	A	T	6.127e^-4	0.87	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18447884	2R_18447884_DEL [dm3] 2R_22560379_DEL [dm6]	AG	C	6.128e^-4	0.87	INTRON px
2R	18447888	2R_18447888_DEL [dm3] 2R_22560383_DEL [dm6]	GCATT	G	6.128e^-4	0.87	INTRON px
2R	6822271	2R_6822271_DEL [dm3] 2R_10934766_DEL [dm6]	TACTTGT	T	6.131e^-4	0.87	INTERGENIC
2L	7358265	2L_7358265_SNP [dm3] 2L_7358265_SNP [dm6]	G	A	6.137e^-4	0.87	INTERGENIC
2L	3259350	2L_3259350_INS [dm3] 2L_3259350_INS [dm6]	A	ATA	6.163e^-4	0.87	INTERGENIC
X	16490065	X_16490065_SNP [dm3] X_16596032_SNP [dm6]	C	T	6.167e^-4	0.87	UTR_3_PRIME CG9784 DOWNSTREAM crl & 1 other
X	16490107	X_16490107_SNP [dm3] X_16596074_SNP [dm6]	C	T	6.167e^-4	0.87	UTR_3_PRIME CG9784 DOWNSTREAM crl & 1 other
3R	1388861	3R_1388861_SNP [dm3] 3R_5563139_SNP [dm6]	G	T	6.169e^-4	0.87	UTR_5_PRIME Pi4KIIalpha DOWNSTREAM CG14671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1431826	3R_1431826_SNP [dm3] 3R_5606104_SNP [dm6]	A	T	6.169e^-4	0.87	NON_SYNONYMOUS_CODING asl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12517033	3L_12517033_SNP [dm3] 3L_12523933_SNP [dm6]	T	C	6.178e^-4	0.87	UTR_5_PRIME Gcn5 UPSTREAM ver	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16623048	2L_16623048_INS [dm3] 2L_16623048_INS [dm6]	T	TTGCGCATCT	6.187e^-4	0.87	INTRON CG42389
3L	3857136	3L_3857136_SNP [dm3] 3L_3857136_SNP [dm6]	G	A	6.188e^-4	0.87	INTRON Awh
3R	18184961	3R_18184961_SNP [dm3] 3R_22359239_SNP [dm6]	T	C	6.211e^-4	0.87	INTRON Sar1
X	16585318	X_16585318_SNP [dm3] X_16691285_SNP [dm6]	A	C	6.221e^-4	0.87	INTRON Sep4
2L	4813435	2L_4813435_SNP [dm3] 2L_4813435_SNP [dm6]	A	G	6.245e^-4	0.87	NON_SYNONYMOUS_CODING CG15629
3R	8154206	3R_8154206_SNP [dm3] 3R_12328484_SNP [dm6]	A	G	6.247e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2R	4480507	2R_4480507_SNP [dm3] 2R_8593002_SNP [dm6]	C	G	6.276e^-4	0.87	DOWNSTREAM CG43183 INTERGENIC
3L	4994613	3L_4994613_SNP [dm3] 3L_4994613_SNP [dm6]	C	T	6.305e^-4	0.87	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14493790	3L_14493790_SNP [dm3] 3L_14500690_SNP [dm6]	G	T	6.310e^-4	0.87	INTRON bbg
2L	11267228	2L_11267228_SNP [dm3] 2L_11267228_SNP [dm6]	A	G	6.313e^-4	0.87	SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
3L	18005095	3L_18005095_SNP [dm3] 3L_18011995_SNP [dm6]	C	G	6.315e^-4	0.87	INTRON Eip75B
2L	8619923	2L_8619923_SNP [dm3] 2L_8619923_SNP [dm6]	G	A	6.327e^-4	0.87	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	10244804	2L_10244804_SNP [dm3] 2L_10244804_SNP [dm6]	T	A	6.329e^-4	0.87	SYNONYMOUS_CODING chico INTRON CR44995
2L	19290069	2L_19290069_SNP [dm3] 2L_19290069_SNP [dm6]	A	G	6.337e^-4	0.87	INTERGENIC
2R	17294617	2R_17294617_INS [dm3] 2R_21407112_INS [dm6]	C	ACCT	6.344e^-4	0.87	INTRON Sdc
2L	4121555	2L_4121555_SNP [dm3] 2L_4121555_SNP [dm6]	C	G	6.352e^-4	0.87	UTR_3_PRIME Sr-CIII UPSTREAM Sr-CI
3L	14493716	3L_14493716_SNP [dm3] 3L_14500616_SNP [dm6]	A	G	6.358e^-4	0.87	INTRON bbg
2L	12592527	2L_12592527_SNP [dm3] 2L_12592527_SNP [dm6]	T	A	6.369e^-4	0.87	INTRON nub
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	6.390e^-4	0.87	INTERGENIC
3R	22784957	3R_22784957_SNP [dm3] 3R_26959235_SNP [dm6]	A	T	6.393e^-4	0.87	UPSTREAM CG6330 INTERGENIC
2R	13478554	2R_13478554_SNP [dm3] 2R_17591049_SNP [dm6]	G	A	6.403e^-4	0.87	NON_SYNONYMOUS_CODING icln UPSTREAM RhoGAP54D DOWNSTREAM CG30105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	18990774	2R_18990774_SNP [dm3] 2R_23103251_SNP [dm6]	C	T	6.446e^-4	0.87	SYNONYMOUS_CODING Gr59c DOWNSTREAM Gr59d
2L	14297272	2L_14297272_SNP [dm3] 2L_14297272_SNP [dm6]	A	G	6.468e^-4	0.87	INTRON wb
2L	14297277	2L_14297277_SNP [dm3] 2L_14297277_SNP [dm6]	C	A	6.468e^-4	0.87	INTRON wb
2L	14297295	2L_14297295_INS [dm3] 2L_14297295_INS [dm6]	T	TCTTG	6.468e^-4	0.87	INTRON wb
2L	14297319	2L_14297319_SNP [dm3] 2L_14297319_SNP [dm6]	A	G	6.468e^-4	0.87	INTRON wb
2L	14297320	2L_14297320_DEL [dm3] 2L_14297320_DEL [dm6]	AC	A	6.468e^-4	0.87	INTRON wb
3L	3266982	3L_3266982_SNP [dm3] 3L_3266982_SNP [dm6]	G	C	6.469e^-4	0.87	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15741607	2L_15741607_SNP [dm3] 2L_15741607_SNP [dm6]	G	A	6.480e^-4	0.87	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13029882	3R_13029882_SNP [dm3] 3R_17204160_SNP [dm6]	G	C	6.488e^-4	0.87	INTERGENIC
2R	13478208	2R_13478208_SNP [dm3] 2R_17590703_SNP [dm6]	A	G	6.503e^-4	0.87	UTR_5_PRIME RhoGAP54D UPSTREAM icln & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	11134120	3L_11134120_SNP [dm3] 3L_11141020_SNP [dm6]	C	T	6.506e^-4	0.87	INTRON CG32082
2R	9430335	2R_9430335_DEL [dm3] 2R_13542830_DEL [dm6]	AA	A	6.507e^-4	0.87	INTRON CG6145
3R	19069805	3R_19069805_SNP [dm3] 3R_23244083_SNP [dm6]	T	G	6.510e^-4	0.87	INTRON CG4467
3R	10257390	3R_10257390_SNP [dm3] 3R_14431668_SNP [dm6]	T	A	6.511e^-4	0.87	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3R	10257398	3R_10257398_DEL [dm3] 3R_14431676_DEL [dm6]	GTTTCATCAC	A	6.511e^-4	0.87	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2R	10972523	2R_10972523_SNP [dm3] 2R_15085018_SNP [dm6]	G	C	6.562e^-4	0.87	INTERGENIC
2R	20093033	2R_20093033_SNP [dm3] 2R_24205510_SNP [dm6]	G	C	6.575e^-4	0.87	UTR_3_PRIME CG11406 INTRON CG11406
2L	4009395	2L_4009395_SNP [dm3] 2L_4009395_SNP [dm6]	A	G	6.575e^-4	0.87	DOWNSTREAM CG43774 INTERGENIC
2L	13646641	2L_13646641_SNP [dm3] 2L_13646641_SNP [dm6]	T	C	6.585e^-4	0.87	INTERGENIC
2L	6956061	2L_6956061_SNP [dm3] 2L_6956061_SNP [dm6]	T	C	6.585e^-4	0.87	SYNONYMOUS_CODING CG13775 UPSTREAM CG3430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8154299	3R_8154299_SNP [dm3] 3R_12328577_SNP [dm6]	T	C	6.596e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2R	3304384	2R_3304384_SNP [dm3] 2R_7416879_SNP [dm6]	G	A	6.617e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3306186	2R_3306186_SNP [dm3] 2R_7418681_SNP [dm6]	G	C	6.617e^-4	0.87	UPSTREAM so INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8712340	2L_8712340_INS [dm3] 2L_8712340_INS [dm6]	G	GAC	6.638e^-4	0.87	INTRON raw
2L	8712348	2L_8712348_SNP [dm3] 2L_8712348_SNP [dm6]	G	A	6.638e^-4	0.87	INTRON raw
2L	8712373	2L_8712373_INS [dm3] 2L_8712373_INS [dm6]	A	ATGATTCTTCACA...	6.638e^-4	0.87	INTRON raw
3L	9563031	3L_9563031_DEL [dm3] 3L_9569931_DEL [dm6]	ACTCTTCATA	A	6.644e^-4	0.87	INTRON CG42673
2R	6307733	2R_6307733_SNP [dm3] 2R_10420228_SNP [dm6]	A	T	6.647e^-4	0.87	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4359447	2L_4359447_SNP [dm3] 2L_4359447_SNP [dm6]	T	C	6.648e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
3R	1905942	3R_1905942_SNP [dm3] 3R_6080220_SNP [dm6]	T	C	6.649e^-4	0.87	INTERGENIC
3L	887031	3L_887031_SNP [dm3] 3L_887031_SNP [dm6]	A	G	6.659e^-4	0.87	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_dl
3L	17197661	3L_17197661_SNP [dm3] 3L_17204561_SNP [dm6]	A	C	6.660e^-4	0.87	INTRON Rbp6
X	7638621	X_7638621_SNP [dm3] X_7744588_SNP [dm6]	C	T	6.668e^-4	0.87	INTERGENIC
3R	21709121	3R_21709121_SNP [dm3] 3R_25883399_SNP [dm6]	C	T	6.669e^-4	0.87	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21709176	3R_21709176_SNP [dm3] 3R_25883454_SNP [dm6]	T	C	6.669e^-4	0.87	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11256164	3L_11256164_SNP [dm3] 3L_11263064_SNP [dm6]	A	G	6.683e^-4	0.87	INTERGENIC
3R	22783091	3R_22783091_SNP [dm3] 3R_26957369_SNP [dm6]	T	C	6.689e^-4	0.87	INTRON CG6330	TF binding site mE1_TFBS_inv
2R	14777393	2R_14777393_SNP [dm3] 2R_18889888_SNP [dm6]	T	A	6.691e^-4	0.87	INTRON sano
3L	8719994	3L_8719994_SNP [dm3] 3L_8726894_SNP [dm6]	A	C	6.694e^-4	0.87	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8720074	3L_8720074_SNP [dm3] 3L_8726974_SNP [dm6]	A	G	6.694e^-4	0.87	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8720087	3L_8720087_SNP [dm3] 3L_8726987_SNP [dm6]	A	T	6.694e^-4	0.87	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13945441	3L_13945441_SNP [dm3] 3L_13952341_SNP [dm6]	A	G	6.698e^-4	0.87	INTRON CG32137
2L	18170406	2L_18170406_SNP [dm3] 2L_18170406_SNP [dm6]	A	G	6.706e^-4	0.87	INTRON CG42750
2L	18226636	2L_18226636_SNP [dm3] 2L_18226636_SNP [dm6]	T	A	6.714e^-4	0.87	INTRON CG42750
X	5979929	X_5979929_SNP [dm3] X_6085896_SNP [dm6]	A	G	6.718e^-4	0.87	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13204436	2R_13204436_SNP [dm3] 2R_17316931_SNP [dm6]	G	A	6.727e^-4	0.87	INTRON mbl
X	4364090	X_4364090_SNP [dm3] X_4470057_SNP [dm6]	T	C	6.733e^-4	0.87	INTRON bi & 1 other
3L	13943550	3L_13943550_SNP [dm3] 3L_13950450_SNP [dm6]	G	T	6.739e^-4	0.87	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8486484	2R_8486484_SNP [dm3] 2R_12598979_SNP [dm6]	A	G	6.740e^-4	0.87	INTRON Amph
2R	3313437	2R_3313437_SNP [dm3] 2R_7425932_SNP [dm6]	G	A	6.745e^-4	0.87	SYNONYMOUS_CODING so	TF binding site mE1_TFBS_cad
2L	14397596	2L_14397596_SNP [dm3] 2L_14397596_SNP [dm6]	A	G	6.751e^-4	0.87	INTRON elB
3R	15408632	3R_15408632_SNP [dm3] 3R_19582910_SNP [dm6]	A	T	6.761e^-4	0.87	INTRON Dys	TF binding site mE1_TFBS_cad
3L	17607024	3L_17607024_SNP [dm3] 3L_17613924_SNP [dm6]	C	T	6.768e^-4	0.87	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10418276	2R_10418276_SNP [dm3] 2R_14530771_SNP [dm6]	C	T	6.772e^-4	0.87	INTRON ttv
2R	9811134	2R_9811134_SNP [dm3] 2R_13923629_SNP [dm6]	G	A	6.773e^-4	0.87	INTRON shot	TF binding site BDTNP1_TFBS_dl
3R	3203631	3R_3203631_SNP [dm3] 3R_7377909_SNP [dm6]	A	C	6.778e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10806858	2L_10806858_SNP [dm3] 2L_10806858_SNP [dm6]	C	T	6.814e^-4	0.87	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9193364	X_9193364_DEL [dm3] X_9299331_DEL [dm6]	TGGG	T	6.815e^-4	0.87	INTRON lz
3R	4114768	3R_4114768_SNP [dm3] 3R_8289046_SNP [dm6]	T	A	6.816e^-4	0.87	DOWNSTREAM CG11672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6859722	2R_6859722_SNP [dm3] 2R_10972217_SNP [dm6]	T	C	6.823e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14077787	3L_14077787_SNP [dm3] 3L_14084687_SNP [dm6]	T	A	6.829e^-4	0.87	NON_SYNONYMOUS_CODING CG8100
X	8082316	X_8082316_SNP [dm3] X_8188283_SNP [dm6]	G	A	6.839e^-4	0.87	INTRON sdt
3L	3934390	3L_3934390_SNP [dm3] 3L_3934390_SNP [dm6]	C	G	6.843e^-4	0.87	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
X	16957798	X_16957798_SNP [dm3] X_17063765_SNP [dm6]	G	T	6.845e^-4	0.87	INTRON CG45002
2L	10084973	2L_10084973_DEL [dm3] 2L_10084973_DEL [dm6]	TCT	T	6.854e^-4	0.87	INTRON CG44153
2L	9155666	2L_9155666_SNP [dm3] 2L_9155666_SNP [dm6]	A	T	6.857e^-4	0.87	INTRON CG32982
3L	6393503	3L_6393503_SNP [dm3] 3L_6400403_SNP [dm6]	C	T	6.857e^-4	0.87	UPSTREAM CG42747 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
2L	17427900	2L_17427900_SNP [dm3] 2L_17427900_SNP [dm6]	A	G	6.867e^-4	0.87	UTR_5_PRIME Dif INTRON Dif
X	12285416	X_12285416_SNP [dm3] X_12391383_SNP [dm6]	A	T	6.868e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22563944	3R_22563944_SNP [dm3] 3R_26738222_SNP [dm6]	C	T	6.875e^-4	0.87	SYNONYMOUS_CODING CG14247
2R	12689771	2R_12689771_SNP [dm3] 2R_16802266_SNP [dm6]	T	C	6.889e^-4	0.87	INTERGENIC
3R	3396213	3R_3396213_SNP [dm3] 3R_7570491_SNP [dm6]	C	T	6.890e^-4	0.87	UTR_3_PRIME CG34127 DOWNSTREAM CG34127
2R	17852988	2R_17852988_SNP [dm3] 2R_21965483_SNP [dm6]	G	A	6.895e^-4	0.87	INTRON ppk9
3L	21760795	3L_21760795_SNP [dm3] 3L_21767695_SNP [dm6]	G	A	6.902e^-4	0.87	INTRON Syn1 & 1 other
X	10379458	X_10379458_SNP [dm3] X_10485425_SNP [dm6]	A	C	6.903e^-4	0.87	INTRON CG32687
2L	10824074	2L_10824074_SNP [dm3] 2L_10824074_SNP [dm6]	A	T	6.905e^-4	0.87	INTRON Nos
3R	17652679	3R_17652679_SNP [dm3] 3R_21826957_SNP [dm6]	T	C	6.919e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19188842	2L_19188842_SNP [dm3] 2L_19188842_SNP [dm6]	G	T	6.923e^-4	0.87	INTRON pigeon
2L	19188850	2L_19188850_SNP [dm3] 2L_19188850_SNP [dm6]	C	A	6.923e^-4	0.87	INTRON pigeon
2L	14421842	2L_14421842_SNP [dm3] 2L_14421842_SNP [dm6]	A	G	6.935e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	4359348	2L_4359348_SNP [dm3] 2L_4359348_SNP [dm6]	C	T	6.941e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
2L	4359392	2L_4359392_SNP [dm3] 2L_4359392_SNP [dm6]	C	G	6.941e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
3L	886836	3L_886836_SNP [dm3] 3L_886836_SNP [dm6]	C	G	6.949e^-4	0.87	INTRON CG32479	TF binding site BDTNP1_TFBS_Med
3L	7120337	3L_7120337_SNP [dm3] 3L_7127237_SNP [dm6]	G	A	6.969e^-4	0.87	NON_SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14148838	3R_14148838_SNP [dm3] 3R_18323116_SNP [dm6]	T	A	6.983e^-4	0.87	INTRON CG31235
2L	3829809	2L_3829809_SNP [dm3] 2L_3829809_SNP [dm6]	G	A	6.985e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8492854	2L_8492854_SNP [dm3] 2L_8492854_SNP [dm6]	C	A	6.989e^-4	0.87	INTRON Dh31
2L	6141825	2L_6141825_SNP [dm3] 2L_6141825_SNP [dm6]	G	T	6.994e^-4	0.87	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7363722	2L_7363722_DEL [dm3] 2L_7363722_DEL [dm6]	CATAAGC	C	6.995e^-4	0.87	UTR_5_PRIME Wnt10
X	7575865	X_7575865_DEL [dm3] X_7681832_DEL [dm6]	GG	G	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7575971	X_7575971_SNP [dm3] X_7681938_SNP [dm6]	G	A	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7575981	X_7575981_SNP [dm3] X_7681948_SNP [dm6]	T	C	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7575998	X_7575998_SNP [dm3] X_7681965_SNP [dm6]	T	C	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576001	X_7576001_SNP [dm3] X_7681968_SNP [dm6]	A	G	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576010	X_7576010_SNP [dm3] X_7681977_SNP [dm6]	G	T	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576028	X_7576028_SNP [dm3] X_7681995_SNP [dm6]	G	A	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576029	X_7576029_SNP [dm3] X_7681996_SNP [dm6]	T	C	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576043	X_7576043_SNP [dm3] X_7682010_SNP [dm6]	C	T	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576054	X_7576054_SNP [dm3] X_7682021_SNP [dm6]	A	T	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	7576155	X_7576155_SNP [dm3] X_7682122_SNP [dm6]	C	T	6.997e^-4	0.87	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3L	17629351	3L_17629351_SNP [dm3] 3L_17636251_SNP [dm6]	G	C	6.999e^-4	0.87	INTRON CG7497
3L	21760817	3L_21760817_DEL [dm3] 3L_21767717_DEL [dm6]	CA	C	7.007e^-4	0.87	INTRON Syn1 & 1 other
2L	14330130	2L_14330130_SNP [dm3] 2L_14330130_SNP [dm6]	C	T	7.014e^-4	0.87	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
X	2519565	X_2519565_SNP [dm3] X_2625532_SNP [dm6]	C	A	7.034e^-4	0.87	UPSTREAM brv3 INTRON PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14321450	2R_14321450_SNP [dm3] 2R_18433945_SNP [dm6]	G	A	7.034e^-4	0.87	INTRON CG30118
3L	9563078	3L_9563078_SNP [dm3] 3L_9569978_SNP [dm6]	G	T	7.046e^-4	0.87	INTRON CG42673
3L	9563089	3L_9563089_SNP [dm3] 3L_9569989_SNP [dm6]	A	G	7.046e^-4	0.87	INTRON CG42673
3L	9563105	3L_9563105_SNP [dm3] 3L_9570005_SNP [dm6]	G	C	7.046e^-4	0.87	INTRON CG42673
3L	9563154	3L_9563154_SNP [dm3] 3L_9570054_SNP [dm6]	T	A	7.046e^-4	0.87	INTRON CG42673
2R	14221912	2R_14221912_SNP [dm3] 2R_18334407_SNP [dm6]	A	T	7.048e^-4	0.87	INTRON sbb
2R	14222054	2R_14222054_SNP [dm3] 2R_18334549_SNP [dm6]	G	A	7.048e^-4	0.87	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15025216	3L_15025216_SNP [dm3] 3L_15032116_SNP [dm6]	T	C	7.050e^-4	0.87	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17564711	X_17564711_DEL [dm3] X_17670678_DEL [dm6]	CATGC	C	7.050e^-4	0.87	INTRON CG12990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6274079	2L_6274079_SNP [dm3] 2L_6274079_SNP [dm6]	T	C	7.053e^-4	0.87	INTRON Ddr
2L	9017471	2L_9017471_SNP [dm3] 2L_9017471_SNP [dm6]	G	A	7.053e^-4	0.87	INTERGENIC
X	8381239	X_8381239_SNP [dm3] X_8487206_SNP [dm6]	T	C	7.060e^-4	0.87	INTRON otu
2R	12760299	2R_12760299_SNP [dm3] 2R_16872794_SNP [dm6]	C	T	7.075e^-4	0.87	SYNONYMOUS_CODING CG6421 UPSTREAM CG6429 & 1 other DOWNSTREAM CG6426	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7358214	2L_7358214_MNP [dm3] 2L_7358214_MNP [dm6]	GCA	TTT	7.087e^-4	0.87	INTERGENIC
2L	7358235	2L_7358235_SNP [dm3] 2L_7358235_SNP [dm6]	T	A	7.087e^-4	0.87	INTERGENIC
2L	7358239	2L_7358239_INS [dm3] 2L_7358239_INS [dm6]	A	ATTACA	7.087e^-4	0.87	INTERGENIC
3L	10555433	3L_10555433_SNP [dm3] 3L_10562333_SNP [dm6]	T	G	7.096e^-4	0.87	INTRON A2bp1
3L	716881	3L_716881_SNP [dm3] 3L_716881_SNP [dm6]	T	C	7.106e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14223779	2R_14223779_SNP [dm3] 2R_18336274_SNP [dm6]	A	T	7.130e^-4	0.87	INTRON sbb
X	2307219	X_2307219_SNP [dm3] X_2413186_SNP [dm6]	C	A	7.133e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18721691	2R_18721691_SNP [dm3] 2R_22834168_SNP [dm6]	C	T	7.147e^-4	0.87	NON_SYNONYMOUS_CODING CG30265 UPSTREAM CG12490
2L	7358188	2L_7358188_SNP [dm3] 2L_7358188_SNP [dm6]	C	A	7.172e^-4	0.87	INTERGENIC
2L	7358236	2L_7358236_SNP [dm3] 2L_7358236_SNP [dm6]	G	T	7.172e^-4	0.87	INTERGENIC
3R	19742844	3R_19742844_SNP [dm3] 3R_23917122_SNP [dm6]	T	C	7.178e^-4	0.87	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	18099929	2L_18099929_SNP [dm3] 2L_18099929_SNP [dm6]	T	C	7.188e^-4	0.87	INTERGENIC
3L	2856409	3L_2856409_SNP [dm3] 3L_2856409_SNP [dm6]	A	C	7.193e^-4	0.87	INTRON CG43444
3L	21773966	3L_21773966_SNP [dm3] 3L_21780866_SNP [dm6]	A	T	7.198e^-4	0.87	INTERGENIC
3L	2324022	3L_2324022_SNP [dm3] 3L_2324022_SNP [dm6]	G	T	7.205e^-4	0.87	INTRON MsR1
2R	16013041	2R_16013041_SNP [dm3] 2R_20125536_SNP [dm6]	A	G	7.213e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10564191	3L_10564191_SNP [dm3] 3L_10571091_SNP [dm6]	T	C	7.217e^-4	0.87	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
2R	8482474	2R_8482474_SNP [dm3] 2R_12594969_SNP [dm6]	T	C	7.218e^-4	0.87	INTRON Amph EXON CR43909
2L	8714963	2L_8714963_SNP [dm3] 2L_8714963_SNP [dm6]	G	T	7.227e^-4	0.87	UPSTREAM raw INTRON raw
2R	11254279	2R_11254279_SNP [dm3] 2R_15366774_SNP [dm6]	A	C	7.233e^-4	0.87	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10555069	3L_10555069_SNP [dm3] 3L_10561969_SNP [dm6]	G	A	7.241e^-4	0.87	INTRON A2bp1
3L	3483808	3L_3483808_SNP [dm3] 3L_3483808_SNP [dm6]	A	G	7.247e^-4	0.87	DOWNSTREAM CG43074 INTRON CG42324
2L	17885868	2L_17885868_SNP [dm3] 2L_17885868_SNP [dm6]	T	C	7.272e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21329760	3R_21329760_SNP [dm3] 3R_25504038_SNP [dm6]	G	A	7.282e^-4	0.87	DOWNSTREAM CR43457 EXON CR45651	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18891221	2L_18891221_SNP [dm3] 2L_18891221_SNP [dm6]	A	G	7.289e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10891638	2L_10891638_SNP [dm3] 2L_10891638_SNP [dm6]	T	C	7.299e^-4	0.87	INTERGENIC
2L	10891640	2L_10891640_SNP [dm3] 2L_10891640_SNP [dm6]	G	A	7.299e^-4	0.87	INTERGENIC
2R	17686495	2R_17686495_SNP [dm3] 2R_21798990_SNP [dm6]	G	C	7.302e^-4	0.87	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_HSA
2R	19720721	2R_19720721_SNP [dm3] 2R_23833198_SNP [dm6]	C	A	7.320e^-4	0.87	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3L	2958255	3L_2958255_SNP [dm3] 3L_2958255_SNP [dm6]	G	C	7.331e^-4	0.87	UTR_3_PRIME Shab
3R	19069796	3R_19069796_SNP [dm3] 3R_23244074_SNP [dm6]	C	A	7.336e^-4	0.87	INTRON CG4467
3L	6265841	3L_6265841_SNP [dm3] 3L_6272741_SNP [dm6]	T	A	7.340e^-4	0.87	INTERGENIC
3L	21028780	3L_21028780_DEL [dm3] 3L_21035680_DEL [dm6]	AGATAGTATTCATCTTTAAA...	A	7.340e^-4	0.87	INTRON siz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1782913	2L_1782913_SNP [dm3] 2L_1782913_SNP [dm6]	G	A	7.346e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
3R	21833482	3R_21833482_SNP [dm3] 3R_26007760_SNP [dm6]	T	A	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC
3R	21833489	3R_21833489_SNP [dm3] 3R_26007767_SNP [dm6]	A	C	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC
3R	21833559	3R_21833559_SNP [dm3] 3R_26007837_SNP [dm6]	C	T	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833560	3R_21833560_SNP [dm3] 3R_26007838_SNP [dm6]	T	A	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833614	3R_21833614_SNP [dm3] 3R_26007892_SNP [dm6]	G	A	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833701	3R_21833701_SNP [dm3] 3R_26007979_SNP [dm6]	T	C	7.388e^-4	0.87	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834710	3R_21834710_SNP [dm3] 3R_26008988_SNP [dm6]	T	A	7.388e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834859	3R_21834859_SNP [dm3] 3R_26009137_SNP [dm6]	A	C	7.388e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	10918110	2R_10918110_SNP [dm3] 2R_15030605_SNP [dm6]	T	C	7.405e^-4	0.87	INTRON hbs	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	5506097	2L_5506097_SNP [dm3] 2L_5506097_SNP [dm6]	A	T	7.419e^-4	0.87	INTERGENIC
2L	6139884	2L_6139884_SNP [dm3] 2L_6139884_SNP [dm6]	C	T	7.428e^-4	0.87	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11465988	2R_11465988_SNP [dm3] 2R_15578483_SNP [dm6]	G	T	7.436e^-4	0.87	INTERGENIC
3R	8154214	3R_8154214_SNP [dm3] 3R_12328492_SNP [dm6]	C	A	7.437e^-4	0.87	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	14493741	3L_14493741_DEL [dm3] 3L_14500641_DEL [dm6]	CTG	T	7.460e^-4	0.87	INTRON bbg
3L	14493748	3L_14493748_SNP [dm3] 3L_14500648_SNP [dm6]	T	A	7.460e^-4	0.87	INTRON bbg
3L	14493803	3L_14493803_SNP [dm3] 3L_14500703_SNP [dm6]	C	T	7.460e^-4	0.87	INTRON bbg
X	15451709	X_15451709_SNP [dm3] X_15557676_SNP [dm6]	G	A	7.475e^-4	0.87	INTERGENIC
X	15451712	X_15451712_SNP [dm3] X_15557679_SNP [dm6]	G	A	7.475e^-4	0.87	INTERGENIC
3R	25122752	3R_25122752_SNP [dm3] 3R_29297030_SNP [dm6]	T	C	7.480e^-4	0.87	INTRON CG14506	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	14685779	2R_14685779_SNP [dm3] 2R_18798274_SNP [dm6]	C	A	7.496e^-4	0.87	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo
3L	5147200	3L_5147200_SNP [dm3] 3L_5154100_SNP [dm6]	C	T	7.502e^-4	0.87	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
2L	8983592	2L_8983592_SNP [dm3] 2L_8983592_SNP [dm6]	G	T	7.526e^-4	0.87	INTRON CG13101
2L	21866279	2L_21866279_SNP [dm3] 2L_21866279_SNP [dm6]	A	C	7.538e^-4	0.87	UPSTREAM CR44917 DOWNSTREAM CR44919 INTRON CR44917 EXON CR44918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2361239	3R_2361239_DEL [dm3] 3R_6535517_DEL [dm6]	AATGA	A	7.538e^-4	0.87	INTRON dpr11	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1904149	2L_1904149_SNP [dm3] 2L_1904149_SNP [dm6]	C	T	7.539e^-4	0.87	INTRON CG7337
3R	21522626	3R_21522626_SNP [dm3] 3R_25696904_SNP [dm6]	A	C	7.547e^-4	0.87	INTERGENIC
2L	12796658	2L_12796658_INS [dm3] 2L_12796658_INS [dm6]	A	AAGCACA	7.551e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15859948	2L_15859948_SNP [dm3] 2L_15859948_SNP [dm6]	C	T	7.562e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14740371	3R_14740371_SNP [dm3] 3R_18914649_SNP [dm6]	T	G	7.567e^-4	0.87	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21859222	3L_21859222_SNP [dm3] 3L_21866122_SNP [dm6]	T	A	7.571e^-4	0.87	INTRON mub
X	7644493	X_7644493_SNP [dm3] X_7750460_SNP [dm6]	C	G	7.571e^-4	0.87	INTERGENIC
3L	2602419	3L_2602419_SNP [dm3] 3L_2602419_SNP [dm6]	T	A	7.595e^-4	0.87	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16381847	2R_16381847_DEL [dm3] 2R_20494342_DEL [dm6]	CA	C	7.599e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11773627	2L_11773627_SNP [dm3] 2L_11773627_SNP [dm6]	T	A	7.603e^-4	0.87	INTERGENIC
2R	14289920	2R_14289920_SNP [dm3] 2R_18402415_SNP [dm6]	A	T	7.606e^-4	0.87	UPSTREAM CR43688 & 1 other DOWNSTREAM GstE3 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16371253	2L_16371253_SNP [dm3] 2L_16371253_SNP [dm6]	G	A	7.607e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	4381642	X_4381642_SNP [dm3] X_4487609_SNP [dm6]	T	A	7.611e^-4	0.87	INTRON CR32773
3R	5863693	3R_5863693_SNP [dm3] 3R_10037971_SNP [dm6]	A	T	7.626e^-4	0.87	INTRON Mical
3R	5863698	3R_5863698_INS [dm3] 3R_10037976_INS [dm6]	C	GGG	7.626e^-4	0.87	INTRON Mical
2L	11092511	2L_11092511_SNP [dm3] 2L_11092511_SNP [dm6]	T	A	7.668e^-4	0.87	INTRON CG4705
3R	5864101	3R_5864101_SNP [dm3] 3R_10038379_SNP [dm6]	C	T	7.677e^-4	0.87	INTRON Mical
X	8352063	X_8352063_SNP [dm3] X_8458030_SNP [dm6]	A	T	7.678e^-4	0.87	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
3L	2462011	3L_2462011_SNP [dm3] 3L_2462011_SNP [dm6]	T	C	7.681e^-4	0.87	UPSTREAM CG45186 INTRON CG45186
2R	18990323	2R_18990323_SNP [dm3] 2R_23102800_SNP [dm6]	T	C	7.683e^-4	0.87	NON_SYNONYMOUS_CODING Gr59c
2R	18101569	2R_18101569_SNP [dm3] 2R_22214064_SNP [dm6]	A	T	7.685e^-4	0.87	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18101608	2R_18101608_SNP [dm3] 2R_22214103_SNP [dm6]	A	T	7.685e^-4	0.87	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3862666	3L_3862666_SNP [dm3] 3L_3862666_SNP [dm6]	T	G	7.689e^-4	0.87	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
2R	15512330	2R_15512330_SNP [dm3] 2R_19624825_SNP [dm6]	G	A	7.701e^-4	0.87	INTRON sm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10455418	2R_10455418_SNP [dm3] 2R_14567913_SNP [dm6]	C	A	7.705e^-4	0.87	INTRON ttv
2L	12053113	2L_12053113_SNP [dm3] 2L_12053113_SNP [dm6]	C	A	7.708e^-4	0.87	INTRON JhI-21
2L	8492817	2L_8492817_SNP [dm3] 2L_8492817_SNP [dm6]	G	T	7.718e^-4	0.87	INTRON Dh31
3R	15425332	3R_15425332_SNP [dm3] 3R_19599610_SNP [dm6]	A	G	7.730e^-4	0.87	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10247329	2L_10247329_SNP [dm3] 2L_10247329_SNP [dm6]	G	C	7.735e^-4	0.87	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3329833	3R_3329833_DEL [dm3] 3R_7504111_DEL [dm6]	GAAATTAAAGG...	G	7.736e^-4	0.87	INTRON alpha-Est9
3L	8471964	3L_8471964_SNP [dm3] 3L_8478864_SNP [dm6]	G	C	7.741e^-4	0.87	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6506797	2L_6506797_SNP [dm3] 2L_6506797_SNP [dm6]	T	G	7.743e^-4	0.87	DOWNSTREAM CR44775 INTRON CG31637
3L	21778550	3L_21778550_SNP [dm3] 3L_21785450_SNP [dm6]	A	T	7.756e^-4	0.87	INTERGENIC
3L	10616049	3L_10616049_SNP [dm3] 3L_10622949_SNP [dm6]	G	A	7.760e^-4	0.87	DOWNSTREAM CG42521 INTERGENIC
3L	10616058	3L_10616058_SNP [dm3] 3L_10622958_SNP [dm6]	T	C	7.760e^-4	0.87	DOWNSTREAM CG42521 INTERGENIC
X	7636513	X_7636513_INS [dm3] X_7742480_INS [dm6]	A	AA	7.771e^-4	0.87	INTERGENIC
2L	15283066	2L_15283066_SNP [dm3] 2L_15283066_SNP [dm6]	A	G	7.794e^-4	0.87	INTERGENIC
2R	9424540	2R_9424540_SNP [dm3] 2R_13537035_SNP [dm6]	A	T	7.802e^-4	0.87	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
3R	19044182	3R_19044182_SNP [dm3] 3R_23218460_SNP [dm6]	C	T	7.803e^-4	0.87	NON_SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21438839	3L_21438839_SNP [dm3] 3L_21445739_SNP [dm6]	G	A	7.819e^-4	0.87	UPSTREAM CG5656 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20297930	3R_20297930_SNP [dm3] 3R_24472208_SNP [dm6]	C	T	7.820e^-4	0.87	INTERGENIC
2R	3464501	2R_3464501_SNP [dm3] 2R_7576996_SNP [dm6]	T	C	7.822e^-4	0.87	SYNONYMOUS_CODING Vps13
3L	7591535	3L_7591535_SNP [dm3] 3L_7598435_SNP [dm6]	T	A	7.829e^-4	0.87	INTRON CG33275
3R	17941991	3R_17941991_SNP [dm3] 3R_22116269_SNP [dm6]	A	G	7.836e^-4	0.87	SYNONYMOUS_CODING Ir94b
3R	3330668	3R_3330668_SNP [dm3] 3R_7504946_SNP [dm6]	A	G	7.838e^-4	0.87	UTR_5_PRIME alpha-Est9
2L	5817152	2L_5817152_DEL [dm3] 2L_5817152_DEL [dm6]	GA	G	7.863e^-4	0.87	DOWNSTREAM CG31644 INTERGENIC
2L	6924614	2L_6924614_SNP [dm3] 2L_6924614_SNP [dm6]	A	G	7.865e^-4	0.87	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15240887	3L_15240887_SNP [dm3] 3L_15247787_SNP [dm6]	A	C	7.865e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13441026	2L_13441026_SNP [dm3] 2L_13441026_SNP [dm6]	C	A	7.872e^-4	0.87	INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
2L	13441028	2L_13441028_SNP [dm3] 2L_13441028_SNP [dm6]	T	A	7.872e^-4	0.87	INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
2R	13395531	2R_13395531_SNP [dm3] 2R_17508026_SNP [dm6]	C	T	7.878e^-4	0.87	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14561076	2R_14561076_SNP [dm3] 2R_18673571_SNP [dm6]	C	T	7.886e^-4	0.87	UPSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12038586	3R_12038586_SNP [dm3] 3R_16212864_SNP [dm6]	G	A	7.894e^-4	0.87	UPSTREAM CR45642 INTERGENIC
2R	1777154	2R_1777154_SNP [dm3] 2R_5889649_SNP [dm6]	G	A	7.916e^-4	0.87	INTERGENIC	transposable element FlyBase
3L	705380	3L_705380_SNP [dm3] 3L_705380_SNP [dm6]	G	T	7.918e^-4	0.87	DOWNSTREAM CG13895 EXON CR44514
2R	19185710	2R_19185710_SNP [dm3] 2R_23298187_SNP [dm6]	G	T	7.918e^-4	0.87	INTERGENIC
X	3099099	X_3099099_SNP [dm3] X_3205066_SNP [dm6]	G	T	7.919e^-4	0.87	INTRON dnc	TF binding site mE1_TFBS_inv
2L	2655785	2L_2655785_SNP [dm3] 2L_2655785_SNP [dm6]	A	G	7.920e^-4	0.87	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	9342275	2L_9342275_SNP [dm3] 2L_9342275_SNP [dm6]	C	A	7.943e^-4	0.87	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2R	17265140	2R_17265140_SNP [dm3] 2R_21377635_SNP [dm6]	A	G	7.951e^-4	0.87	INTRON cv-2
2R	17265617	2R_17265617_SNP [dm3] 2R_21378112_SNP [dm6]	A	T	7.951e^-4	0.87	INTRON cv-2
2R	17951175	2R_17951175_SNP [dm3] 2R_22063670_SNP [dm6]	C	T	7.951e^-4	0.87	INTRON Snp
3R	1906463	3R_1906463_SNP [dm3] 3R_6080741_SNP [dm6]	G	A	7.962e^-4	0.87	INTERGENIC
X	6570917	X_6570917_SNP [dm3] X_6676884_SNP [dm6]	A	G	7.968e^-4	0.87	SYNONYMOUS_CODING Mcm6 DOWNSTREAM CG3192	TF binding site mE1_TFBS_cad
X	8742608	X_8742608_SNP [dm3] X_8848575_SNP [dm6]	C	G	7.983e^-4	0.87	INTRON CG12075
3R	26232532	3R_26232532_SNP [dm3] 3R_30406810_SNP [dm6]	T	C	8.010e^-4	0.87	INTERGENIC
3R	26232538	3R_26232538_SNP [dm3] 3R_30406816_SNP [dm6]	T	C	8.010e^-4	0.87	INTERGENIC
X	2157044	X_2157044_SNP [dm3] X_2263011_SNP [dm6]	G	A	8.010e^-4	0.87	UPSTREAM l_1_G0144 INTRON CG3071	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13401510	2R_13401510_SNP [dm3] 2R_17514005_SNP [dm6]	T	G	8.017e^-4	0.87	UPSTREAM CG4853 DOWNSTREAM CG4847 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
2R	11217541	2R_11217541_SNP [dm3] 2R_15330036_SNP [dm6]	G	T	8.021e^-4	0.87	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10395271	2R_10395271_SNP [dm3] 2R_14507766_SNP [dm6]	A	G	8.021e^-4	0.87	SYNONYMOUS_CODING Asx
2L	12021247	2L_12021247_SNP [dm3] 2L_12021247_SNP [dm6]	C	T	8.024e^-4	0.87	UPSTREAM CG6734 INTERGENIC
2L	14593246	2L_14593246_SNP [dm3] 2L_14593246_SNP [dm6]	C	G	8.048e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26109897	3R_26109897_SNP [dm3] 3R_30284175_SNP [dm6]	A	G	8.054e^-4	0.87	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	5642535	2L_5642535_SNP [dm3] 2L_5642535_SNP [dm6]	A	G	8.080e^-4	0.87	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3R	15425091	3R_15425091_SNP [dm3] 3R_19599369_SNP [dm6]	C	T	8.084e^-4	0.87	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15425092	3R_15425092_SNP [dm3] 3R_19599370_SNP [dm6]	T	C	8.084e^-4	0.87	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9575348	3R_9575348_SNP [dm3] 3R_13749626_SNP [dm6]	T	C	8.110e^-4	0.87	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23942769	3R_23942769_SNP [dm3] 3R_28117047_SNP [dm6]	A	T	8.111e^-4	0.87	INTERGENIC
3R	9902787	3R_9902787_SNP [dm3] 3R_14077065_SNP [dm6]	T	A	8.119e^-4	0.87	INTRON foxo
2R	13480004	2R_13480004_SNP [dm3] 2R_17592499_SNP [dm6]	T	C	8.183e^-4	0.87	UTR_5_PRIME CG30105 UPSTREAM lack DOWNSTREAM icln	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7075879	3L_7075879_SNP [dm3] 3L_7082779_SNP [dm6]	T	A	8.189e^-4	0.87	INTERGENIC
X	14874836	X_14874836_SNP [dm3] X_14980803_SNP [dm6]	A	G	8.196e^-4	0.87	INTRON eag
X	14874993	X_14874993_SNP [dm3] X_14980960_SNP [dm6]	T	G	8.196e^-4	0.87	INTRON eag
X	14875040	X_14875040_SNP [dm3] X_14981007_SNP [dm6]	C	T	8.196e^-4	0.87	INTRON eag
X	14875127	X_14875127_SNP [dm3] X_14981094_SNP [dm6]	G	A	8.196e^-4	0.87	INTRON eag
X	14876934	X_14876934_SNP [dm3] X_14982901_SNP [dm6]	G	A	8.196e^-4	0.87	INTRON eag
X	14876936	X_14876936_SNP [dm3] X_14982903_SNP [dm6]	C	T	8.196e^-4	0.87	INTRON eag
X	14876938	X_14876938_SNP [dm3] X_14982905_SNP [dm6]	T	A	8.196e^-4	0.87	INTRON eag
3R	27189481	3R_27189481_SNP [dm3] 3R_31363759_SNP [dm6]	A	C	8.200e^-4	0.87	INTRON CG34347
3R	21009754	3R_21009754_SNP [dm3] 3R_25184032_SNP [dm6]	G	A	8.205e^-4	0.87	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24572609	3R_24572609_SNP [dm3] 3R_28746887_SNP [dm6]	G	C	8.212e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4382361	X_4382361_INS [dm3] X_4488328_INS [dm6]	A	ACT	8.229e^-4	0.87	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	4382364	X_4382364_SNP [dm3] X_4488331_SNP [dm6]	T	G	8.229e^-4	0.87	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	9327310	2L_9327310_SNP [dm3] 2L_9327310_SNP [dm6]	G	T	8.244e^-4	0.87	UPSTREAM CG17005 DOWNSTREAM CR45456 EXON CR45457
X	11306891	X_11306891_SNP [dm3] X_11412858_SNP [dm6]	C	T	8.246e^-4	0.87	SYNONYMOUS_CODING Gr10b DOWNSTREAM Gr10a
X	10867140	X_10867140_SNP [dm3] X_10973107_SNP [dm6]	G	A	8.252e^-4	0.87	INTRON CG42339

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.398e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1134 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5389320	2L_5389320_SNP [dm3] 2L_5389320_SNP [dm6]	T	G	4.771e^-7	0.611	DOWNSTREAM CR44745 INTERGENIC
X	7628580	X_7628580_SNP [dm3] X_7734547_SNP [dm6]	T	A	5.827e^-6	0.611	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	7628624	X_7628624_SNP [dm3] X_7734591_SNP [dm6]	C	T	5.827e^-6	0.611	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12592527	2L_12592527_SNP [dm3] 2L_12592527_SNP [dm6]	T	A	7.142e^-6	0.611	INTRON nub
3L	12334191	3L_12334191_SNP [dm3] 3L_12341091_SNP [dm6]	G	A	9.485e^-6	0.611	INTRON CrzR
3R	5888035	3R_5888035_SNP [dm3] 3R_10062313_SNP [dm6]	G	A	1.081e^-5	0.611	UPSTREAM CG33630 & 1 other EXON CR33629
X	14369399	X_14369399_SNP [dm3] X_14475366_SNP [dm6]	T	G	1.869e^-5	0.611	NON_SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22001622	2L_22001622_SNP [dm3] 2L_22001622_SNP [dm6]	G	T	1.937e^-5	0.611	INTERGENIC
2L	10671508	2L_10671508_SNP [dm3] 2L_10671508_SNP [dm6]	G	T	1.937e^-5	0.611	DOWNSTREAM CG31871 INTERGENIC
2L	6712550	2L_6712550_SNP [dm3] 2L_6712550_SNP [dm6]	T	C	2.091e^-5	0.611	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3R	9317188	3R_9317188_SNP [dm3] 3R_13491466_SNP [dm6]	G	A	2.324e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
X	7628620	X_7628620_DEL [dm3] X_7734587_DEL [dm6]	TT	T	2.382e^-5	0.611	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1198947	2L_1198947_SNP [dm3] 2L_1198947_SNP [dm6]	G	C	2.389e^-5	0.611	SYNONYMOUS_CODING CG5139 UPSTREAM CG43348
2L	19086369	2L_19086369_SNP [dm3] 2L_19086369_SNP [dm6]	T	C	2.785e^-5	0.611	INTRON Lim3
2L	6712556	2L_6712556_SNP [dm3] 2L_6712556_SNP [dm6]	C	A	2.838e^-5	0.611	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3R	21833482	3R_21833482_SNP [dm3] 3R_26007760_SNP [dm6]	T	A	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC
3R	21833489	3R_21833489_SNP [dm3] 3R_26007767_SNP [dm6]	A	C	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC
3R	21833559	3R_21833559_SNP [dm3] 3R_26007837_SNP [dm6]	C	T	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833560	3R_21833560_SNP [dm3] 3R_26007838_SNP [dm6]	T	A	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833614	3R_21833614_SNP [dm3] 3R_26007892_SNP [dm6]	G	A	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833701	3R_21833701_SNP [dm3] 3R_26007979_SNP [dm6]	T	C	2.928e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834710	3R_21834710_SNP [dm3] 3R_26008988_SNP [dm6]	T	A	2.928e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834859	3R_21834859_SNP [dm3] 3R_26009137_SNP [dm6]	A	C	2.928e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	21834861	3R_21834861_SNP [dm3] 3R_26009139_SNP [dm6]	C	T	2.928e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	11642532	3R_11642532_SNP [dm3] 3R_15816810_SNP [dm6]	G	A	2.967e^-5	0.611	INTRON alpha-Man-IIb
2L	20120944	2L_20120944_DEL [dm3] 2L_20120944_DEL [dm6]	AG	A	3.094e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	20120972	2L_20120972_SNP [dm3] 2L_20120972_SNP [dm6]	T	A	3.094e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	3.244e^-5	0.611	INTRON dpr6
3R	1839119	3R_1839119_SNP [dm3] 3R_6013397_SNP [dm6]	G	A	3.329e^-5	0.611	INTERGENIC
X	2918362	X_2918362_SNP [dm3] X_3024329_SNP [dm6]	C	A	3.745e^-5	0.611	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1381376	3L_1381376_SNP [dm3] 3L_1381376_SNP [dm6]	T	C	3.832e^-5	0.611	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7710440	2L_7710440_SNP [dm3] 2L_7710440_SNP [dm6]	T	C	3.902e^-5	0.611	NON_SYNONYMOUS_CODING Tep3 UPSTREAM Ntl EXON CR44990	TF binding site mE1_TFBS_cad
3R	4114768	3R_4114768_SNP [dm3] 3R_8289046_SNP [dm6]	T	A	3.928e^-5	0.611	DOWNSTREAM CG11672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15464548	2R_15464548_SNP [dm3] 2R_19577043_SNP [dm6]	G	C	4.062e^-5	0.611	INTRON sm
2L	18431164	2L_18431164_SNP [dm3] 2L_18431164_SNP [dm6]	T	C	4.386e^-5	0.611	INTERGENIC
2R	13395537	2R_13395537_SNP [dm3] 2R_17508032_SNP [dm6]	T	C	4.398e^-5	0.611	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9046523	X_9046523_SNP [dm3] X_9152490_SNP [dm6]	C	T	4.473e^-5	0.611	DOWNSTREAM His3.3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	7066130	2R_7066130_SNP [dm3] 2R_11178625_SNP [dm6]	A	G	4.725e^-5	0.611	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9638479	3L_9638479_SNP [dm3] 3L_9645379_SNP [dm6]	T	C	4.897e^-5	0.611	SYNONYMOUS_CODING CG33696 INTRON fry
3L	9638484	3L_9638484_SNP [dm3] 3L_9645384_SNP [dm6]	A	T	4.897e^-5	0.611	SYNONYMOUS_CODING CG33696 INTRON fry
2R	19229197	2R_19229197_SNP [dm3] 2R_23341674_SNP [dm6]	G	A	4.953e^-5	0.611	INTERGENIC
3R	8491422	3R_8491422_SNP [dm3] 3R_12665700_SNP [dm6]	G	A	5.204e^-5	0.611	INTRON CG14395
3R	21834108	3R_21834108_SNP [dm3] 3R_26008386_SNP [dm6]	T	C	5.556e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11642535	3R_11642535_DEL [dm3] 3R_15816813_DEL [dm6]	GG	G	5.556e^-5	0.611	INTRON alpha-Man-IIb
3R	10935663	3R_10935663_SNP [dm3] 3R_15109941_SNP [dm6]	G	C	5.810e^-5	0.611	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3R	21833619	3R_21833619_INS [dm3] 3R_26007897_INS [dm6]	A	AGCTA	5.939e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18831759	2R_18831759_SNP [dm3] 2R_22944236_SNP [dm6]	A	G	5.989e^-5	0.611	NON_SYNONYMOUS_CODING CG42694
2R	9567864	2R_9567864_SNP [dm3] 2R_13680359_SNP [dm6]	T	G	6.007e^-5	0.611	INTRON fas
3R	1906463	3R_1906463_SNP [dm3] 3R_6080741_SNP [dm6]	G	A	6.022e^-5	0.611	INTERGENIC
2L	5771631	2L_5771631_SNP [dm3] 2L_5771631_SNP [dm6]	G	T	6.216e^-5	0.611	DOWNSTREAM CR31912 INTRON CG9171	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	19086363	2L_19086363_SNP [dm3] 2L_19086363_SNP [dm6]	C	T	6.565e^-5	0.611	INTRON Lim3
2L	17490787	2L_17490787_SNP [dm3] 2L_17490787_SNP [dm6]	A	G	6.675e^-5	0.611	INTRON qua	TF binding site mE1_TFBS_HSA
X	18005150	X_18005150_SNP [dm3] X_18111117_SNP [dm6]	C	T	6.789e^-5	0.611	INTRON wupA	TF binding site BDTNP1_TFBS_dl
3L	4510294	3L_4510294_SNP [dm3] 3L_4510294_SNP [dm6]	A	T	6.849e^-5	0.611	DOWNSTREAM Tie INTERGENIC
X	2918370	X_2918370_SNP [dm3] X_3024337_SNP [dm6]	A	C	6.918e^-5	0.611	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	850522	3R_850522_SNP [dm3] 3R_5024800_SNP [dm6]	T	A	7.039e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	7.194e^-5	0.611	UPSTREAM CG45186 INTRON CG45186
2L	12619651	2L_12619651_SNP [dm3] 2L_12619651_SNP [dm6]	A	C	7.212e^-5	0.611	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21835402	3R_21835402_SNP [dm3] 3R_26009680_SNP [dm6]	T	C	7.428e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	7675060	2R_7675060_SNP [dm3] 2R_11787555_SNP [dm6]	C	G	7.501e^-5	0.611	DOWNSTREAM Ir48c INTRON ths
2R	5300340	2R_5300340_SNP [dm3] 2R_9412835_SNP [dm6]	C	T	7.559e^-5	0.611	INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6398938	3R_6398938_SNP [dm3] 3R_10573216_SNP [dm6]	T	A	7.584e^-5	0.611	INTRON hth	TF binding site BDTNP1_TFBS_dl
X	17256642	X_17256642_SNP [dm3] X_17362609_SNP [dm6]	T	G	7.747e^-5	0.611	INTERGENIC
2R	16013023	2R_16013023_SNP [dm3] 2R_20125518_SNP [dm6]	T	C	7.797e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
X	8055296	X_8055296_SNP [dm3] X_8161263_SNP [dm6]	T	C	8.023e^-5	0.611	NON_SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11642117	3R_11642117_SNP [dm3] 3R_15816395_SNP [dm6]	G	A	8.325e^-5	0.611	INTRON alpha-Man-IIb
2L	6090377	2L_6090377_SNP [dm3] 2L_6090377_SNP [dm6]	T	C	8.360e^-5	0.611	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2413202	3L_2413202_INS [dm3] 3L_2413202_INS [dm6]	A	AA	8.418e^-5	0.611	UPSTREAM CG45186 INTRON CG45186
3L	8728048	3L_8728048_SNP [dm3] 3L_8734948_SNP [dm6]	C	G	8.427e^-5	0.611	INTRON Prm	TF binding site mE1_TFBS_cad
3R	15467967	3R_15467967_SNP [dm3] 3R_19642245_SNP [dm6]	G	T	8.433e^-5	0.611	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17404134	3L_17404134_SNP [dm3] 3L_17411034_SNP [dm6]	C	T	8.463e^-5	0.611	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
X	6817431	X_6817431_SNP [dm3] X_6923398_SNP [dm6]	A	G	8.472e^-5	0.611	INTRON CG14431
3R	10687131	3R_10687131_SNP [dm3] 3R_14861409_SNP [dm6]	C	T	8.589e^-5	0.611	INTRON btsz
3R	21833484	3R_21833484_SNP [dm3] 3R_26007762_SNP [dm6]	A	G	8.589e^-5	0.611	UPSTREAM CR45039 INTERGENIC
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	8.589e^-5	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834700	3R_21834700_SNP [dm3] 3R_26008978_SNP [dm6]	C	G	8.589e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834702	3R_21834702_SNP [dm3] 3R_26008980_SNP [dm6]	A	G	8.589e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834717	3R_21834717_SNP [dm3] 3R_26008995_SNP [dm6]	A	G	8.589e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834722	3R_21834722_SNP [dm3] 3R_26009000_SNP [dm6]	T	A	8.589e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834724	3R_21834724_SNP [dm3] 3R_26009002_SNP [dm6]	G	A	8.589e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21835230	3R_21835230_SNP [dm3] 3R_26009508_SNP [dm6]	T	G	9.014e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_sens
2L	6349278	2L_6349278_SNP [dm3] 2L_6349278_SNP [dm6]	A	G	9.030e^-5	0.611	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
2R	4480507	2R_4480507_SNP [dm3] 2R_8593002_SNP [dm6]	C	G	9.229e^-5	0.611	DOWNSTREAM CG43183 INTERGENIC
3L	6627697	3L_6627697_SNP [dm3] 3L_6634597_SNP [dm6]	T	C	9.261e^-5	0.611	SYNONYMOUS_CODING GluRIA
3L	5135860	3L_5135860_SNP [dm3] 3L_5142760_SNP [dm6]	C	T	9.601e^-5	0.611	INTRON CG4623
3L	11243491	3L_11243491_SNP [dm3] 3L_11250391_SNP [dm6]	A	G	9.656e^-5	0.611	DOWNSTREAM CR44716 EXON CR44717	TF binding site mE1_TFBS_inv
X	8716348	X_8716348_SNP [dm3] X_8822315_SNP [dm6]	G	T	9.722e^-5	0.611	INTERGENIC
3R	10687044	3R_10687044_SNP [dm3] 3R_14861322_SNP [dm6]	C	A	9.789e^-5	0.611	INTRON btsz
2L	20545337	2L_20545337_SNP [dm3] 2L_20545337_SNP [dm6]	T	C	9.898e^-5	0.611	INTERGENIC
X	2417282	X_2417282_SNP [dm3] X_2523249_SNP [dm6]	G	C	1.006e^-4	0.611	INTRON trol
X	8152336	X_8152336_DEL [dm3] X_8258303_DEL [dm6]	GCTACTCCA	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	8152362	X_8152362_SNP [dm3] X_8258329_SNP [dm6]	T	C	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	8152368	X_8152368_DEL [dm3] X_8258335_DEL [dm6]	TATACACA	T	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	8152379	X_8152379_SNP [dm3] X_8258346_SNP [dm6]	T	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152384	X_8152384_SNP [dm3] X_8258351_SNP [dm6]	A	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152386	X_8152386_SNP [dm3] X_8258353_SNP [dm6]	C	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152387	X_8152387_SNP [dm3] X_8258354_SNP [dm6]	T	C	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152395	X_8152395_SNP [dm3] X_8258362_SNP [dm6]	A	T	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152406	X_8152406_SNP [dm3] X_8258373_SNP [dm6]	T	C	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152410	X_8152410_SNP [dm3] X_8258377_SNP [dm6]	A	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152415	X_8152415_SNP [dm3] X_8258382_SNP [dm6]	C	A	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152419	X_8152419_SNP [dm3] X_8258386_SNP [dm6]	A	G	1.007e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10687035	3R_10687035_SNP [dm3] 3R_14861313_SNP [dm6]	T	A	1.018e^-4	0.611	INTRON btsz
2L	15174642	2L_15174642_SNP [dm3] 2L_15174642_SNP [dm6]	G	A	1.019e^-4	0.611	INTRON CG4168
3L	14077787	3L_14077787_SNP [dm3] 3L_14084687_SNP [dm6]	T	A	1.027e^-4	0.611	NON_SYNONYMOUS_CODING CG8100
3L	4510273	3L_4510273_SNP [dm3] 3L_4510273_SNP [dm6]	T	G	1.049e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	18887113	3L_18887113_SNP [dm3] 3L_18894013_SNP [dm6]	C	T	1.060e^-4	0.611	DOWNSTREAM NijB INTRON CG3902	TF binding site mE1_TFBS_cad
X	14254221	X_14254221_SNP [dm3] X_14360188_SNP [dm6]	T	G	1.070e^-4	0.611	INTRON dpr8
3R	1936848	3R_1936848_SNP [dm3] 3R_6111126_SNP [dm6]	G	A	1.084e^-4	0.611	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
X	4538548	X_4538548_SNP [dm3] X_4644515_SNP [dm6]	A	T	1.091e^-4	0.611	UPSTREAM CG3081 DOWNSTREAM HLH4C INTRON CG3062
3L	9735626	3L_9735626_SNP [dm3] 3L_9742526_SNP [dm6]	G	A	1.106e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
2L	542418	2L_542418_SNP [dm3] 2L_542418_SNP [dm6]	A	G	1.122e^-4	0.611	DOWNSTREAM Spp INTRON lwr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	17256563	X_17256563_DEL [dm3] X_17362530_DEL [dm6]	TCA	T	1.133e^-4	0.611	INTERGENIC
X	17256646	X_17256646_SNP [dm3] X_17362613_SNP [dm6]	A	G	1.133e^-4	0.611	INTERGENIC
3L	18071395	3L_18071395_SNP [dm3] 3L_18078295_SNP [dm6]	T	C	1.151e^-4	0.611	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18457797	2R_18457797_SNP [dm3] 2R_22570292_SNP [dm6]	C	T	1.155e^-4	0.611	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7632093	X_7632093_SNP [dm3] X_7738060_SNP [dm6]	C	T	1.155e^-4	0.611	SYNONYMOUS_CODING Tom40	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8492858	2L_8492858_SNP [dm3] 2L_8492858_SNP [dm6]	A	G	1.170e^-4	0.611	INTRON Dh31
3R	19847516	3R_19847516_SNP [dm3] 3R_24021794_SNP [dm6]	C	T	1.174e^-4	0.611	INTRON KrT95D
2L	3762534	2L_3762534_SNP [dm3] 2L_3762534_SNP [dm6]	T	G	1.184e^-4	0.611	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	21837186	3L_21837186_SNP [dm3] 3L_21844086_SNP [dm6]	G	A	1.193e^-4	0.611	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	21643793	3L_21643793_SNP [dm3] 3L_21650693_SNP [dm6]	T	C	1.204e^-4	0.611	INTRON CG43980
3L	10559405	3L_10559405_SNP [dm3] 3L_10566305_SNP [dm6]	G	A	1.209e^-4	0.611	INTRON A2bp1
3L	10559869	3L_10559869_SNP [dm3] 3L_10566769_SNP [dm6]	C	A	1.209e^-4	0.611	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	18579300	2L_18579300_SNP [dm3] 2L_18579300_SNP [dm6]	C	T	1.249e^-4	0.611	INTRON Pde11
3R	13745579	3R_13745579_SNP [dm3] 3R_17919857_SNP [dm6]	G	A	1.255e^-4	0.611	UTR_5_PRIME cpo	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	7675103	2R_7675103_SNP [dm3] 2R_11787598_SNP [dm6]	T	C	1.255e^-4	0.611	DOWNSTREAM Ir48c INTRON ths
3R	9873922	3R_9873922_SNP [dm3] 3R_14048200_SNP [dm6]	G	A	1.258e^-4	0.611	INTERGENIC
3L	22581848	3L_22581848_SNP [dm3] 3L_22588748_SNP [dm6]	A	G	1.280e^-4	0.611	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26640096	3R_26640096_SNP [dm3] 3R_30814374_SNP [dm6]	C	T	1.290e^-4	0.611	INTRON cindr	TF binding site BDTNP1_TFBS_twi
3R	18872612	3R_18872612_SNP [dm3] 3R_23046890_SNP [dm6]	T	G	1.320e^-4	0.611	INTRON CG17121
2L	8250061	2L_8250061_SNP [dm3] 2L_8250061_SNP [dm6]	A	G	1.360e^-4	0.611	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	21834729	3R_21834729_SNP [dm3] 3R_26009007_SNP [dm6]	T	G	1.363e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17143981	2R_17143981_SNP [dm3] 2R_21256476_SNP [dm6]	G	T	1.398e^-4	0.611	INTRON Rgk3
3L	14978265	3L_14978265_DEL [dm3] 3L_14985165_DEL [dm6]	AA	A	1.399e^-4	0.611	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_Kr
2L	6492118	2L_6492118_SNP [dm3] 2L_6492118_SNP [dm6]	C	T	1.405e^-4	0.611	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10756049	3R_10756049_SNP [dm3] 3R_14930327_SNP [dm6]	G	C	1.414e^-4	0.611	INTERGENIC
3R	19847392	3R_19847392_SNP [dm3] 3R_24021670_SNP [dm6]	C	T	1.437e^-4	0.611	INTRON KrT95D
2L	19277234	2L_19277234_INS [dm3] 2L_19277234_INS [dm6]	C	CC	1.444e^-4	0.611	INTERGENIC
3R	13912761	3R_13912761_SNP [dm3] 3R_18087039_SNP [dm6]	A	G	1.445e^-4	0.611	INTERGENIC
2R	5007060	2R_5007060_SNP [dm3] 2R_9119555_SNP [dm6]	G	A	1.446e^-4	0.611	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
2L	8712316	2L_8712316_SNP [dm3] 2L_8712316_SNP [dm6]	A	G	1.450e^-4	0.611	INTRON raw
2L	8712319	2L_8712319_SNP [dm3] 2L_8712319_SNP [dm6]	A	G	1.450e^-4	0.611	INTRON raw
2L	7377094	2L_7377094_SNP [dm3] 2L_7377094_SNP [dm6]	T	C	1.452e^-4	0.611	SYNONYMOUS_CODING Wnt10 UPSTREAM ninaC
3L	4510046	3L_4510046_SNP [dm3] 3L_4510046_SNP [dm6]	A	T	1.453e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	4510095	3L_4510095_DEL [dm3] 3L_4510095_DEL [dm6]	AC	A	1.453e^-4	0.611	DOWNSTREAM Tie INTERGENIC
X	5144901	X_5144901_SNP [dm3] X_5250868_SNP [dm6]	C	A	1.479e^-4	0.611	UTR_3_PRIME CG15465 & 1 other
X	16359560	X_16359560_SNP [dm3] X_16465527_SNP [dm6]	G	C	1.483e^-4	0.611	INTRON para
3R	1936958	3R_1936958_SNP [dm3] 3R_6111236_SNP [dm6]	T	A	1.486e^-4	0.611	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2R	16013051	2R_16013051_SNP [dm3] 2R_20125546_SNP [dm6]	C	A	1.487e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9733864	3L_9733864_SNP [dm3] 3L_9740764_SNP [dm6]	G	T	1.493e^-4	0.611	UPSTREAM CR44348 INTRON CG42268
3L	9735570	3L_9735570_SNP [dm3] 3L_9742470_SNP [dm6]	C	T	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3L	9735643	3L_9735643_SNP [dm3] 3L_9742543_SNP [dm6]	G	T	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3L	9735657	3L_9735657_SNP [dm3] 3L_9742557_SNP [dm6]	C	G	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3L	9735687	3L_9735687_INS [dm3] 3L_9742587_INS [dm6]	T	TCATT	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9735704	3L_9735704_SNP [dm3] 3L_9742604_SNP [dm6]	A	T	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9735748	3L_9735748_DEL [dm3] 3L_9742648_DEL [dm6]	TC	T	1.493e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16226478	2R_16226478_SNP [dm3] 2R_20338973_SNP [dm6]	A	C	1.503e^-4	0.611	INTERGENIC
2L	9858658	2L_9858658_SNP [dm3] 2L_9858658_SNP [dm6]	A	T	1.510e^-4	0.611	INTRON nAChRalpha6
2R	18827470	2R_18827470_SNP [dm3] 2R_22939947_SNP [dm6]	C	G	1.528e^-4	0.611	SYNONYMOUS_CODING CG3831 DOWNSTREAM CG9849
X	9044676	X_9044676_SNP [dm3] X_9150643_SNP [dm6]	T	C	1.530e^-4	0.611	SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6348901	2L_6348901_SNP [dm3] 2L_6348901_SNP [dm6]	C	G	1.538e^-4	0.611	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
2L	3753488	2L_3753488_SNP [dm3] 2L_3753488_SNP [dm6]	G	A	1.558e^-4	0.611	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
2L	3753489	2L_3753489_SNP [dm3] 2L_3753489_SNP [dm6]	C	T	1.558e^-4	0.611	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
2R	8562807	2R_8562807_SNP [dm3] 2R_12675302_SNP [dm6]	T	G	1.618e^-4	0.611	SYNONYMOUS_CODING CG42708 UPSTREAM CG42708 INTRON CG42708
3L	4510280	3L_4510280_SNP [dm3] 3L_4510280_SNP [dm6]	T	A	1.655e^-4	0.611	DOWNSTREAM Tie INTERGENIC
X	13128677	X_13128677_SNP [dm3] X_13234644_SNP [dm6]	A	G	1.685e^-4	0.611	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18986951	2R_18986951_SNP [dm3] 2R_23099428_SNP [dm6]	G	A	1.691e^-4	0.611	DOWNSTREAM RpL37b INTERGENIC
3L	10423569	3L_10423569_SNP [dm3] 3L_10430469_SNP [dm6]	G	C	1.692e^-4	0.611	SYNONYMOUS_CODING Ir67b
3L	5502701	3L_5502701_SNP [dm3] 3L_5509601_SNP [dm6]	C	T	1.692e^-4	0.611	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11120144	3R_11120144_SNP [dm3] 3R_15294422_SNP [dm6]	T	C	1.711e^-4	0.611	INTRON Tm1	TF binding site mE1_TFBS_HSA
X	13128577	X_13128577_SNP [dm3] X_13234544_SNP [dm6]	G	A	1.729e^-4	0.611	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17147664	3L_17147664_SNP [dm3] 3L_17154564_SNP [dm6]	A	C	1.729e^-4	0.611	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6627808	3L_6627808_INS [dm3] 3L_6634708_INS [dm6]	C	CT	1.737e^-4	0.611	INTRON GluRIA
2L	12797333	2L_12797333_SNP [dm3] 2L_12797333_SNP [dm6]	C	A	1.743e^-4	0.611	INTERGENIC
2L	12797132	2L_12797132_SNP [dm3] 2L_12797132_SNP [dm6]	G	C	1.750e^-4	0.611	INTERGENIC
2L	12797215	2L_12797215_SNP [dm3] 2L_12797215_SNP [dm6]	C	T	1.750e^-4	0.611	INTERGENIC
3R	21833505	3R_21833505_SNP [dm3] 3R_26007783_SNP [dm6]	T	C	1.756e^-4	0.611	UPSTREAM CR45039 INTERGENIC
3R	21834781	3R_21834781_SNP [dm3] 3R_26009059_SNP [dm6]	T	G	1.756e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20361826	2R_20361826_SNP [dm3] 2R_24474303_SNP [dm6]	C	G	1.758e^-4	0.611	START_GAINED CG3494 UTR_5_PRIME CG3494 UPSTREAM CG3494 DOWNSTREAM CG3492 INTRON CG13579
3L	5986926	3L_5986926_SNP [dm3] 3L_5993826_SNP [dm6]	G	T	1.773e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9457782	2L_9457782_SNP [dm3] 2L_9457782_SNP [dm6]	A	G	1.778e^-4	0.611	INTRON numb
2L	16047434	2L_16047434_SNP [dm3] 2L_16047434_SNP [dm6]	A	G	1.780e^-4	0.611	SYNONYMOUS_CODING BicC UTR_3_PRIME CG45084	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	1.781e^-4	0.611	INTERGENIC
2R	15464555	2R_15464555_SNP [dm3] 2R_19577050_SNP [dm6]	C	T	1.788e^-4	0.611	INTRON sm
2R	6919895	2R_6919895_DEL [dm3] 2R_11032390_DEL [dm6]	CGCTTTGGTTC...	C	1.792e^-4	0.611	INTRON luna
X	7630989	X_7630989_SNP [dm3] X_7736956_SNP [dm6]	T	A	1.801e^-4	0.611	UTR_5_PRIME Tom40 UPSTREAM Tom40 DOWNSTREAM Rab39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19689682	2L_19689682_SNP [dm3] 2L_19689682_SNP [dm6]	T	C	1.826e^-4	0.611	INTRON Lar
2L	19689608	2L_19689608_SNP [dm3] 2L_19689608_SNP [dm6]	C	G	1.854e^-4	0.611	INTRON Lar
2L	19689612	2L_19689612_SNP [dm3] 2L_19689612_SNP [dm6]	C	A	1.854e^-4	0.611	INTRON Lar
3L	10577037	3L_10577037_SNP [dm3] 3L_10583937_SNP [dm6]	G	C	1.857e^-4	0.611	INTRON A2bp1
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	1.861e^-4	0.611	INTRON CG4168
2L	18356777	2L_18356777_SNP [dm3] 2L_18356777_SNP [dm6]	C	A	1.891e^-4	0.611	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4510237	3L_4510237_SNP [dm3] 3L_4510237_SNP [dm6]	A	C	1.931e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	5401873	3L_5401873_DEL [dm3] 3L_5408773_DEL [dm6]	TT	T	1.954e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6828146	2L_6828146_SNP [dm3] 2L_6828146_SNP [dm6]	T	C	1.960e^-4	0.611	INTRON sens-2	TF binding site mE1_TFBS_cad
2R	15464588	2R_15464588_SNP [dm3] 2R_19577083_SNP [dm6]	A	G	1.961e^-4	0.611	INTRON sm
2R	15464590	2R_15464590_SNP [dm3] 2R_19577085_SNP [dm6]	A	T	1.961e^-4	0.611	INTRON sm
3R	21833465	3R_21833465_SNP [dm3] 3R_26007743_SNP [dm6]	C	T	1.961e^-4	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2533939	3L_2533939_SNP [dm3] 3L_2533939_SNP [dm6]	C	T	1.967e^-4	0.611	INTRON Spn
3L	4510228	3L_4510228_DEL [dm3] 3L_4510228_DEL [dm6]	AA	A	1.989e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	4510234	3L_4510234_SNP [dm3] 3L_4510234_SNP [dm6]	C	T	1.989e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	4510242	3L_4510242_SNP [dm3] 3L_4510242_SNP [dm6]	C	T	1.989e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3R	24052661	3R_24052661_SNP [dm3] 3R_28226939_SNP [dm6]	A	T	1.995e^-4	0.611	INTRON CG34354
3R	15465476	3R_15465476_SNP [dm3] 3R_19639754_SNP [dm6]	A	G	2.003e^-4	0.611	INTRON subdued
3L	9563072	3L_9563072_SNP [dm3] 3L_9569972_SNP [dm6]	T	A	2.009e^-4	0.611	INTRON CG42673
3L	4510269	3L_4510269_SNP [dm3] 3L_4510269_SNP [dm6]	A	C	2.013e^-4	0.611	DOWNSTREAM Tie INTERGENIC
2L	6529117	2L_6529117_SNP [dm3] 2L_6529117_SNP [dm6]	A	G	2.033e^-4	0.611	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15209320	X_15209320_SNP [dm3] X_15315287_SNP [dm6]	A	T	2.045e^-4	0.611	INTRON gce EXON CR44961
3L	7840701	3L_7840701_SNP [dm3] 3L_7847601_SNP [dm6]	A	T	2.054e^-4	0.611	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	4371114	X_4371114_SNP [dm3] X_4477081_SNP [dm6]	A	T	2.058e^-4	0.611	INTRON bi & 1 other
2L	16176272	2L_16176272_SNP [dm3] 2L_16176272_SNP [dm6]	C	G	2.065e^-4	0.611	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	6349394	2L_6349394_SNP [dm3] 2L_6349394_SNP [dm6]	G	C	2.083e^-4	0.611	UTR_3_PRIME CG9498 UPSTREAM CG9497
3L	8970208	3L_8970208_SNP [dm3] 3L_8977108_SNP [dm6]	C	T	2.091e^-4	0.611	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad
3L	9012071	3L_9012071_SNP [dm3] 3L_9018971_SNP [dm6]	C	G	2.092e^-4	0.611	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9737010	3L_9737010_SNP [dm3] 3L_9743910_SNP [dm6]	C	T	2.112e^-4	0.611	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
3L	7285350	3L_7285350_SNP [dm3] 3L_7292250_SNP [dm6]	T	C	2.115e^-4	0.611	INTRON unc-13-4A
3L	7285381	3L_7285381_SNP [dm3] 3L_7292281_SNP [dm6]	G	A	2.115e^-4	0.611	INTRON unc-13-4A
3R	17865035	3R_17865035_SNP [dm3] 3R_22039313_SNP [dm6]	T	C	2.118e^-4	0.611	DOWNSTREAM pit INTERGENIC
3L	17147731	3L_17147731_SNP [dm3] 3L_17154631_SNP [dm6]	C	T	2.147e^-4	0.611	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6981207	3L_6981207_SNP [dm3] 3L_6988107_SNP [dm6]	T	C	2.148e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	5125745	3L_5125745_INS [dm3] 3L_5132645_INS [dm6]	G	GCCAAATAG	2.154e^-4	0.611	DOWNSTREAM CG15213 & 1 other INTERGENIC
3L	5495165	3L_5495165_SNP [dm3] 3L_5502065_SNP [dm6]	A	T	2.207e^-4	0.611	UPSTREAM CR44519 INTERGENIC
2R	17175175	2R_17175175_SNP [dm3] 2R_21287670_SNP [dm6]	A	G	2.220e^-4	0.611	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	15358542	3L_15358542_SNP [dm3] 3L_15365442_SNP [dm6]	T	C	2.225e^-4	0.611	INTERGENIC
X	652065	X_652065_SNP [dm3] X_758032_SNP [dm6]	A	C	2.231e^-4	0.611	SYNONYMOUS_CODING CG5254	TF binding site mE1_TFBS_sens
3L	14206427	3L_14206427_SNP [dm3] 3L_14213327_SNP [dm6]	T	C	2.259e^-4	0.611	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	18698786	2R_18698786_SNP [dm3] 2R_22811281_SNP [dm6]	G	A	2.277e^-4	0.611	INTRON stl
3L	5147200	3L_5147200_SNP [dm3] 3L_5154100_SNP [dm6]	C	T	2.281e^-4	0.611	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
2L	16812282	2L_16812282_DEL [dm3] 2L_16812282_DEL [dm6]	AA	A	2.288e^-4	0.611	INTRON CG13280 & 1 other
3R	27061538	3R_27061538_SNP [dm3] 3R_31235816_SNP [dm6]	T	C	2.297e^-4	0.611	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
2R	17365920	2R_17365920_SNP [dm3] 2R_21478415_SNP [dm6]	C	A	2.301e^-4	0.611	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6817423	X_6817423_SNP [dm3] X_6923390_SNP [dm6]	A	G	2.307e^-4	0.611	INTRON CG14431
X	10121836	X_10121836_SNP [dm3] X_10227803_SNP [dm6]	C	G	2.333e^-4	0.611	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	14289920	2R_14289920_SNP [dm3] 2R_18402415_SNP [dm6]	A	T	2.340e^-4	0.611	UPSTREAM CR43688 & 1 other DOWNSTREAM GstE3 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3R	21834820	3R_21834820_SNP [dm3] 3R_26009098_SNP [dm6]	T	C	2.347e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	8152347	X_8152347_SNP [dm3] X_8258314_SNP [dm6]	A	G	2.364e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
2R	5956154	2R_5956154_SNP [dm3] 2R_10068649_SNP [dm6]	G	A	2.367e^-4	0.611	UTR_5_PRIME cdc2rk UPSTREAM CG12920	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8262349	2L_8262349_SNP [dm3] 2L_8262349_SNP [dm6]	G	T	2.380e^-4	0.611	NON_SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	20432067	3R_20432067_SNP [dm3] 3R_24606345_SNP [dm6]	T	A	2.449e^-4	0.611	INTRON mld	TF binding site BDTNP1_TFBS_dl
2R	17365967	2R_17365967_SNP [dm3] 2R_21478462_SNP [dm6]	C	A	2.450e^-4	0.611	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19707602	3R_19707602_SNP [dm3] 3R_23881880_SNP [dm6]	G	T	2.453e^-4	0.611	INTRON Pli
3L	3261778	3L_3261778_SNP [dm3] 3L_3261778_SNP [dm6]	G	A	2.468e^-4	0.611	INTRON ckd
3L	4158199	3L_4158199_SNP [dm3] 3L_4158199_SNP [dm6]	G	C	2.485e^-4	0.611	INTRON nab
3R	6129144	3R_6129144_SNP [dm3] 3R_10303422_SNP [dm6]	G	C	2.486e^-4	0.611	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG43143	TF binding site mE1_TFBS_chinmo
X	704565	X_704565_SNP [dm3] X_810532_SNP [dm6]	C	T	2.489e^-4	0.611	SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	704628	X_704628_SNP [dm3] X_810595_SNP [dm6]	T	C	2.489e^-4	0.611	SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20119820	2L_20119820_SNP [dm3] 2L_20119820_SNP [dm6]	C	T	2.495e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_sens
2L	20119916	2L_20119916_SNP [dm3] 2L_20119916_SNP [dm6]	G	T	2.495e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3753469	2L_3753469_SNP [dm3] 2L_3753469_SNP [dm6]	A	C	2.521e^-4	0.611	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
3L	17797843	3L_17797843_SNP [dm3] 3L_17804743_SNP [dm6]	G	T	2.523e^-4	0.611	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_eve
3L	3890995	3L_3890995_SNP [dm3] 3L_3890995_SNP [dm6]	A	T	2.528e^-4	0.611	DOWNSTREAM CR45422 INTERGENIC
3L	3891112	3L_3891112_INS [dm3] 3L_3891112_INS [dm6]	A	AGAA	2.528e^-4	0.611	DOWNSTREAM CR45422 INTERGENIC
3R	23728354	3R_23728354_SNP [dm3] 3R_27902632_SNP [dm6]	G	A	2.531e^-4	0.611	INTRON CG34353
2L	4420080	2L_4420080_SNP [dm3] 2L_4420080_SNP [dm6]	T	C	2.562e^-4	0.611	INTRON CG15431
3L	10664076	3L_10664076_SNP [dm3] 3L_10670976_SNP [dm6]	G	A	2.567e^-4	0.611	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	4616973	3L_4616973_SNP [dm3] 3L_4616973_SNP [dm6]	A	G	2.583e^-4	0.611	INTRON Src64B
2R	10796118	2R_10796118_DEL [dm3] 2R_14908613_DEL [dm6]	GTG	G	2.589e^-4	0.611	UPSTREAM CG10249 INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	20697420	3L_20697420_SNP [dm3] 3L_20704320_SNP [dm6]	C	A	2.591e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14834093	3R_14834093_SNP [dm3] 3R_19008371_SNP [dm6]	G	C	2.611e^-4	0.611	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9638451	3L_9638451_SNP [dm3] 3L_9645351_SNP [dm6]	G	T	2.621e^-4	0.611	SYNONYMOUS_CODING CG33696 INTRON fry
X	9737621	X_9737621_SNP [dm3] X_9843588_SNP [dm6]	T	C	2.625e^-4	0.611	INTRON CG32698	TF binding site mE1_TFBS_inv
2L	10891638	2L_10891638_SNP [dm3] 2L_10891638_SNP [dm6]	T	C	2.634e^-4	0.611	INTERGENIC
2L	10891640	2L_10891640_SNP [dm3] 2L_10891640_SNP [dm6]	G	A	2.634e^-4	0.611	INTERGENIC
3R	1905942	3R_1905942_SNP [dm3] 3R_6080220_SNP [dm6]	T	C	2.642e^-4	0.611	INTERGENIC
2R	13645327	2R_13645327_SNP [dm3] 2R_17757822_SNP [dm6]	T	C	2.656e^-4	0.611	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9438246	2L_9438246_SNP [dm3] 2L_9438246_SNP [dm6]	T	C	2.674e^-4	0.611	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	3767876	3L_3767876_SNP [dm3] 3L_3767876_SNP [dm6]	A	C	2.700e^-4	0.611	INTRON CG32264	TF binding site mE1_TFBS_bab1
3R	4567257	3R_4567257_SNP [dm3] 3R_8741535_SNP [dm6]	T	C	2.703e^-4	0.611	INTRON CG9801
3R	7493761	3R_7493761_SNP [dm3] 3R_11668039_SNP [dm6]	C	A	2.717e^-4	0.611	NON_SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_sens
3L	8160658	3L_8160658_SNP [dm3] 3L_8167558_SNP [dm6]	C	A	2.720e^-4	0.611	INTERGENIC
2R	14322140	2R_14322140_SNP [dm3] 2R_18434635_SNP [dm6]	T	A	2.724e^-4	0.611	INTRON CG30118
X	18475920	X_18475920_SNP [dm3] X_18581887_SNP [dm6]	C	G	2.727e^-4	0.611	INTERGENIC
3R	19045479	3R_19045479_DEL [dm3] 3R_23219757_DEL [dm6]	CAACAC	C	2.747e^-4	0.611	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12608543	X_12608543_SNP [dm3] X_12714510_SNP [dm6]	T	C	2.761e^-4	0.611	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
3L	15025216	3L_15025216_SNP [dm3] 3L_15032116_SNP [dm6]	T	C	2.762e^-4	0.611	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17865255	3R_17865255_SNP [dm3] 3R_22039533_SNP [dm6]	A	C	2.768e^-4	0.611	DOWNSTREAM pit INTERGENIC
3L	4509123	3L_4509123_SNP [dm3] 3L_4509123_SNP [dm6]	A	C	2.790e^-4	0.611	UPSTREAM NT1 INTERGENIC
2L	13519564	2L_13519564_SNP [dm3] 2L_13519564_SNP [dm6]	G	A	2.806e^-4	0.611	INTRON B4
2R	8554968	2R_8554968_SNP [dm3] 2R_12667463_SNP [dm6]	A	G	2.811e^-4	0.611	INTRON nemy
3L	5699381	3L_5699381_SNP [dm3] 3L_5706281_SNP [dm6]	G	A	2.830e^-4	0.611	INTRON sif	TF binding site mE1_TFBS_cad
3L	14978238	3L_14978238_SNP [dm3] 3L_14985138_SNP [dm6]	G	A	2.839e^-4	0.611	UTR_5_PRIME mnd DOWNSTREAM CG5114	TF binding site mE1_TFBS_Kr
3R	18597699	3R_18597699_SNP [dm3] 3R_22771977_SNP [dm6]	C	G	2.852e^-4	0.611	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
3R	26086325	3R_26086325_DEL [dm3] 3R_30260603_DEL [dm6]	GG	G	2.855e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	15344869	3L_15344869_SNP [dm3] 3L_15351769_SNP [dm6]	A	C	2.876e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18865383	2L_18865383_SNP [dm3] 2L_18865383_SNP [dm6]	A	C	2.880e^-4	0.611	INTRON tup	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	6250393	X_6250393_SNP [dm3] X_6356360_SNP [dm6]	T	A	2.890e^-4	0.611	INTRON kdn
3L	13744518	3L_13744518_SNP [dm3] 3L_13751418_SNP [dm6]	C	T	2.891e^-4	0.611	INTRON bru-3	TF binding site mE1_TFBS_HSA
2L	6775114	2L_6775114_SNP [dm3] 2L_6775114_SNP [dm6]	C	T	2.928e^-4	0.611	UPSTREAM CG17378 INTRON CG17378
3L	7877221	3L_7877221_SNP [dm3] 3L_7884121_SNP [dm6]	G	T	2.932e^-4	0.611	INTRON CG32365
2R	17519407	2R_17519407_SNP [dm3] 2R_21631902_SNP [dm6]	C	T	2.940e^-4	0.611	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2R	4269499	2R_4269499_SNP [dm3] 2R_8381994_SNP [dm6]	G	A	2.943e^-4	0.611	INTRON pdm3
2R	4273902	2R_4273902_SNP [dm3] 2R_8386397_SNP [dm6]	T	C	2.945e^-4	0.611	UPSTREAM pdm3 INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15086934	3R_15086934_SNP [dm3] 3R_19261212_SNP [dm6]	G	A	2.947e^-4	0.611	INTERGENIC
3L	8987878	3L_8987878_SNP [dm3] 3L_8994778_SNP [dm6]	A	C	2.957e^-4	0.611	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9516196	3R_9516196_SNP [dm3] 3R_13690474_SNP [dm6]	A	G	2.960e^-4	0.611	INTRON flfl	TF binding site mE1_TFBS_inv
3R	23947014	3R_23947014_SNP [dm3] 3R_28121292_SNP [dm6]	C	A	2.982e^-4	0.611	INTERGENIC
3L	6460216	3L_6460216_SNP [dm3] 3L_6467116_SNP [dm6]	C	G	2.988e^-4	0.611	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	12619259	2L_12619259_SNP [dm3] 2L_12619259_SNP [dm6]	A	T	2.999e^-4	0.611	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	15465452	3R_15465452_SNP [dm3] 3R_19639730_SNP [dm6]	G	A	2.999e^-4	0.611	INTRON subdued
2R	17907264	2R_17907264_SNP [dm3] 2R_22019759_SNP [dm6]	T	C	3.006e^-4	0.611	INTRON CG34370
2L	1999566	2L_1999566_SNP [dm3] 2L_1999566_SNP [dm6]	T	C	3.021e^-4	0.611	UPSTREAM CR43464 INTRON CG33543
3L	9742246	3L_9742246_SNP [dm3] 3L_9749146_SNP [dm6]	C	T	3.034e^-4	0.611	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11473435	2R_11473435_SNP [dm3] 2R_15585930_SNP [dm6]	T	A	3.056e^-4	0.611	INTERGENIC
3L	905048	3L_905048_SNP [dm3] 3L_905048_SNP [dm6]	T	A	3.061e^-4	0.611	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8287922	2L_8287922_SNP [dm3] 2L_8287922_SNP [dm6]	A	T	3.064e^-4	0.611	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8712340	2L_8712340_INS [dm3] 2L_8712340_INS [dm6]	G	GAC	3.072e^-4	0.611	INTRON raw
2L	8712348	2L_8712348_SNP [dm3] 2L_8712348_SNP [dm6]	G	A	3.072e^-4	0.611	INTRON raw
2L	8712373	2L_8712373_INS [dm3] 2L_8712373_INS [dm6]	A	ATGATTCTTCACA...	3.072e^-4	0.611	INTRON raw
3L	13575029	3L_13575029_SNP [dm3] 3L_13581929_SNP [dm6]	C	T	3.075e^-4	0.611	INTRON bru-3
3R	10683843	3R_10683843_SNP [dm3] 3R_14858121_SNP [dm6]	T	A	3.075e^-4	0.611	INTRON btsz
3R	10689173	3R_10689173_SNP [dm3] 3R_14863451_SNP [dm6]	A	T	3.075e^-4	0.611	INTRON btsz
3R	21834878	3R_21834878_SNP [dm3] 3R_26009156_SNP [dm6]	C	T	3.096e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13588808	2R_13588808_SNP [dm3] 2R_17701303_SNP [dm6]	T	A	3.137e^-4	0.611	UPSTREAM snoRNA:Me28S-G3277a & 3 others DOWNSTREAM snoRNA:U29:54Eb & 4 others INTRON Uhg1
3L	13203387	3L_13203387_SNP [dm3] 3L_13210287_SNP [dm6]	T	C	3.138e^-4	0.611	UPSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15924201	3R_15924201_SNP [dm3] 3R_20098479_SNP [dm6]	T	A	3.139e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	6351358	2L_6351358_SNP [dm3] 2L_6351358_SNP [dm6]	T	A	3.144e^-4	0.611	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15395064	2L_15395064_SNP [dm3] 2L_15395064_SNP [dm6]	C	A	3.149e^-4	0.611	INTERGENIC
3L	15050854	3L_15050854_SNP [dm3] 3L_15057754_SNP [dm6]	A	G	3.166e^-4	0.611	INTRON Sytbeta
X	1988168	X_1988168_SNP [dm3] X_2094135_SNP [dm6]	A	C	3.182e^-4	0.611	UPSTREAM csw DOWNSTREAM Unc-76 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	5920125	2L_5920125_SNP [dm3] 2L_5920125_SNP [dm6]	A	C	3.190e^-4	0.611	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
X	9044647	X_9044647_SNP [dm3] X_9150614_SNP [dm6]	A	G	3.203e^-4	0.611	NON_SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19619915	3L_19619915_SNP [dm3] 3L_19626815_SNP [dm6]	T	G	3.208e^-4	0.611	SYNONYMOUS_CODING wnd
X	8152394	X_8152394_SNP [dm3] X_8258361_SNP [dm6]	C	T	3.209e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10680876	3R_10680876_SNP [dm3] 3R_14855154_SNP [dm6]	C	G	3.211e^-4	0.611	INTRON btsz
3R	1876353	3R_1876353_SNP [dm3] 3R_6050631_SNP [dm6]	C	G	3.221e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9985282	2L_9985282_SNP [dm3] 2L_9985282_SNP [dm6]	G	T	3.241e^-4	0.611	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2372295	3R_2372295_SNP [dm3] 3R_6546573_SNP [dm6]	G	A	3.250e^-4	0.611	INTRON dpr11
3R	19069671	3R_19069671_SNP [dm3] 3R_23243949_SNP [dm6]	G	A	3.276e^-4	0.611	INTRON CG4467
3L	1386805	3L_1386805_SNP [dm3] 3L_1386805_SNP [dm6]	G	C	3.284e^-4	0.611	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	1305139	2R_1305139_SNP [dm3] 2R_5417634_SNP [dm6]	T	C	3.309e^-4	0.611	INTRON laccase2	TF binding site BDTNP1_TFBS_dl
2L	13773128	2L_13773128_SNP [dm3] 2L_13773128_SNP [dm6]	T	A	3.330e^-4	0.611	UPSTREAM CG43376 INTRON TM9SF4
3R	14981564	3R_14981564_SNP [dm3] 3R_19155842_SNP [dm6]	G	A	3.342e^-4	0.611	INTRON CG11779	TF binding site mE1_TFBS_sens
3R	10689348	3R_10689348_SNP [dm3] 3R_14863626_SNP [dm6]	G	T	3.373e^-4	0.611	INTRON btsz
2R	8555014	2R_8555014_SNP [dm3] 2R_12667509_SNP [dm6]	A	T	3.374e^-4	0.611	INTRON nemy
3R	19045628	3R_19045628_DEL [dm3] 3R_23219906_DEL [dm6]	AATA	A	3.402e^-4	0.611	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	16402708	3L_16402708_SNP [dm3] 3L_16409608_SNP [dm6]	C	T	3.406e^-4	0.611	INTRON fax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19619914	3L_19619914_SNP [dm3] 3L_19626814_SNP [dm6]	G	T	3.416e^-4	0.611	NON_SYNONYMOUS_CODING wnd
3L	19619921	3L_19619921_SNP [dm3] 3L_19626821_SNP [dm6]	T	A	3.416e^-4	0.611	NON_SYNONYMOUS_CODING wnd
3L	19630487	3L_19630487_SNP [dm3] 3L_19637387_SNP [dm6]	C	T	3.416e^-4	0.611	UTR_3_PRIME CG8786 DOWNSTREAM CG8786	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10032706	2R_10032706_SNP [dm3] 2R_14145201_SNP [dm6]	A	T	3.418e^-4	0.611	DOWNSTREAM mir-989 INTERGENIC
3L	1071935	3L_1071935_DEL [dm3] 3L_1071935_DEL [dm6]	TCCCCTCCCACA...	T	3.425e^-4	0.611	INTRON bab1
3L	6983173	3L_6983173_SNP [dm3] 3L_6990073_SNP [dm6]	T	C	3.425e^-4	0.611	UPSTREAM bin INTERGENIC
3L	6983193	3L_6983193_SNP [dm3] 3L_6990093_SNP [dm6]	G	T	3.425e^-4	0.611	UPSTREAM bin INTERGENIC
2R	6783794	2R_6783794_SNP [dm3] 2R_10896289_SNP [dm6]	A	G	3.433e^-4	0.611	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10303799	2R_10303799_SNP [dm3] 2R_14416294_SNP [dm6]	C	T	3.453e^-4	0.611	INTERGENIC
3L	17161880	3L_17161880_SNP [dm3] 3L_17168780_SNP [dm6]	C	T	3.464e^-4	0.611	INTRON Rbp6
3L	9737873	3L_9737873_SNP [dm3] 3L_9744773_SNP [dm6]	G	A	3.471e^-4	0.611	UPSTREAM CG42268 DOWNSTREAM CR44348 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8492854	2L_8492854_SNP [dm3] 2L_8492854_SNP [dm6]	C	A	3.478e^-4	0.611	INTRON Dh31
3R	21835523	3R_21835523_SNP [dm3] 3R_26009801_SNP [dm6]	A	G	3.483e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	10303817	2R_10303817_SNP [dm3] 2R_14416312_SNP [dm6]	A	G	3.489e^-4	0.611	INTERGENIC
2R	10303824	2R_10303824_SNP [dm3] 2R_14416319_SNP [dm6]	C	G	3.489e^-4	0.611	INTERGENIC
3L	3767938	3L_3767938_SNP [dm3] 3L_3767938_SNP [dm6]	C	A	3.525e^-4	0.611	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	9319161	3L_9319161_SNP [dm3] 3L_9326061_SNP [dm6]	T	G	3.528e^-4	0.611	INTERGENIC
2L	6347562	2L_6347562_SNP [dm3] 2L_6347562_SNP [dm6]	G	A	3.530e^-4	0.611	SYNONYMOUS_CODING CG9497	TF binding site mE1_TFBS_cnc
3L	3446342	3L_3446342_SNP [dm3] 3L_3446342_SNP [dm6]	A	T	3.540e^-4	0.611	INTRON eIF5B
3L	3446349	3L_3446349_SNP [dm3] 3L_3446349_SNP [dm6]	G	A	3.540e^-4	0.611	INTRON eIF5B
3L	2463548	3L_2463548_SNP [dm3] 3L_2463548_SNP [dm6]	A	C	3.541e^-4	0.611	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13056607	X_13056607_SNP [dm3] X_13162574_SNP [dm6]	A	T	3.563e^-4	0.611	SPLICE_SITE_REGION CG34411 UTR_3_PRIME CG12096 DOWNSTREAM CG12096 INTRON CG34411
3R	10601339	3R_10601339_SNP [dm3] 3R_14775617_SNP [dm6]	C	T	3.570e^-4	0.611	INTRON jvl
3L	14206451	3L_14206451_SNP [dm3] 3L_14213351_SNP [dm6]	T	A	3.583e^-4	0.611	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	10063282	2R_10063282_SNP [dm3] 2R_14175777_SNP [dm6]	C	T	3.589e^-4	0.611	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2L	7069128	2L_7069128_SNP [dm3] 2L_7069128_SNP [dm6]	C	A	3.617e^-4	0.611	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
2L	7069171	2L_7069171_SNP [dm3] 2L_7069171_SNP [dm6]	C	T	3.617e^-4	0.611	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3L	21717839	3L_21717839_SNP [dm3] 3L_21724739_SNP [dm6]	C	T	3.631e^-4	0.611	UTR_3_PRIME CG11247	TF binding site BDTNP1_TFBS_twi
3L	15975173	3L_15975173_SNP [dm3] 3L_15982073_SNP [dm6]	A	T	3.636e^-4	0.611	DOWNSTREAM CG17027 INTRON brm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18514239	2L_18514239_SNP [dm3] 2L_18514239_SNP [dm6]	C	A	3.687e^-4	0.611	DOWNSTREAM CG10178 INTERGENIC
2L	8712325	2L_8712325_DEL [dm3] 2L_8712325_DEL [dm6]	TTAGTT	T	3.717e^-4	0.611	INTRON raw
2R	15089292	2R_15089292_SNP [dm3] 2R_19201787_SNP [dm6]	G	T	3.721e^-4	0.611	INTRON hppy
X	2307512	X_2307512_SNP [dm3] X_2413479_SNP [dm6]	T	C	3.725e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18606883	2R_18606883_SNP [dm3] 2R_22719378_SNP [dm6]	A	C	3.748e^-4	0.611	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12689673	2R_12689673_SNP [dm3] 2R_16802168_SNP [dm6]	G	A	3.755e^-4	0.611	INTERGENIC
2R	13827549	2R_13827549_SNP [dm3] 2R_17940044_SNP [dm6]	C	A	3.760e^-4	0.611	INTERGENIC
3L	10192797	3L_10192797_SNP [dm3] 3L_10199697_SNP [dm6]	C	G	3.761e^-4	0.611	INTRON ect
3L	6894168	3L_6894168_SNP [dm3] 3L_6901068_SNP [dm6]	C	T	3.799e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	17154736	3L_17154736_INS [dm3] 3L_17161636_INS [dm6]	G	GGGATAAGGAAGGAGATTCA...	3.839e^-4	0.611	INTRON Rbp6
2L	12411113	2L_12411113_SNP [dm3] 2L_12411113_SNP [dm6]	G	A	3.853e^-4	0.611	INTRON vir-1
2R	9875165	2R_9875165_SNP [dm3] 2R_13987660_SNP [dm6]	A	T	3.863e^-4	0.611	UTR_3_PRIME RN-tre INTRON RN-tre
2R	18037109	2R_18037109_SNP [dm3] 2R_22149604_SNP [dm6]	A	C	3.873e^-4	0.611	INTRON a
3L	6894169	3L_6894169_SNP [dm3] 3L_6901069_SNP [dm6]	G	T	3.878e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_Kr
X	3917860	X_3917860_SNP [dm3] X_4023827_SNP [dm6]	C	G	3.897e^-4	0.611	INTERGENIC
3R	15467999	3R_15467999_SNP [dm3] 3R_19642277_SNP [dm6]	G	A	3.905e^-4	0.611	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26640146	3R_26640146_SNP [dm3] 3R_30814424_SNP [dm6]	G	A	3.909e^-4	0.611	INTRON cindr	TF binding site BDTNP1_TFBS_twi
X	9737800	X_9737800_SNP [dm3] X_9843767_SNP [dm6]	T	C	3.942e^-4	0.611	INTRON CG32698
3L	6668703	3L_6668703_SNP [dm3] 3L_6675603_SNP [dm6]	T	G	3.942e^-4	0.611	INTERGENIC
2R	18606874	2R_18606874_SNP [dm3] 2R_22719369_SNP [dm6]	C	T	3.943e^-4	0.611	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19229271	2R_19229271_SNP [dm3] 2R_23341748_SNP [dm6]	C	T	3.965e^-4	0.611	INTERGENIC
2R	19229280	2R_19229280_SNP [dm3] 2R_23341757_SNP [dm6]	A	T	3.965e^-4	0.611	INTERGENIC
X	15104222	X_15104222_SNP [dm3] X_15210189_SNP [dm6]	A	T	3.973e^-4	0.611	UPSTREAM CG5662 INTERGENIC
X	5867450	X_5867450_DEL [dm3] X_5973417_DEL [dm6]	GG	G	3.998e^-4	0.611	INTRON Grip
3R	17863650	3R_17863650_SNP [dm3] 3R_22037928_SNP [dm6]	T	C	4.004e^-4	0.611	INTRON pit
3R	17863673	3R_17863673_SNP [dm3] 3R_22037951_SNP [dm6]	C	T	4.004e^-4	0.611	INTRON pit
3L	17797884	3L_17797884_SNP [dm3] 3L_17804784_SNP [dm6]	C	A	4.006e^-4	0.611	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3R	11788485	3R_11788485_SNP [dm3] 3R_15962763_SNP [dm6]	C	T	4.018e^-4	0.611	SYNONYMOUS_CODING CG4287 DOWNSTREAM Sap47	TF binding site mE1_TFBS_sens
3R	11788809	3R_11788809_SNP [dm3] 3R_15963087_SNP [dm6]	C	G	4.018e^-4	0.611	SYNONYMOUS_CODING CG4287 UPSTREAM CG5516 DOWNSTREAM Sap47	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	14119416	X_14119416_SNP [dm3] X_14225383_SNP [dm6]	G	T	4.028e^-4	0.611	NON_SYNONYMOUS_CODING CG11674 UPSTREAM mRpL38 DOWNSTREAM l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18549758	2L_18549758_SNP [dm3] 2L_18549758_SNP [dm6]	T	G	4.036e^-4	0.611	INTRON Pde11
2R	16984987	2R_16984987_SNP [dm3] 2R_21097482_SNP [dm6]	T	C	4.037e^-4	0.611	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2731308	2L_2731308_SNP [dm3] 2L_2731308_SNP [dm6]	A	C	4.060e^-4	0.611	INTRON CG31689
2R	1184538	2R_1184538_SNP [dm3] 2R_5297033_SNP [dm6]	C	A	4.083e^-4	0.611	INTERGENIC	transposable element FlyBase
3L	10555433	3L_10555433_SNP [dm3] 3L_10562333_SNP [dm6]	T	G	4.087e^-4	0.611	INTRON A2bp1
3L	11646718	3L_11646718_SNP [dm3] 3L_11653618_SNP [dm6]	C	T	4.118e^-4	0.611	INTRON CG32085
X	730867	X_730867_SNP [dm3] X_836834_SNP [dm6]	G	A	4.133e^-4	0.611	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8646416	3L_8646416_SNP [dm3] 3L_8653316_SNP [dm6]	C	T	4.142e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8959780	3L_8959780_SNP [dm3] 3L_8966680_SNP [dm6]	A	C	4.158e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	4.158e^-4	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833710	3R_21833710_SNP [dm3] 3R_26007988_SNP [dm6]	G	A	4.158e^-4	0.611	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4023515	3R_4023515_SNP [dm3] 3R_8197793_SNP [dm6]	G	A	4.159e^-4	0.611	UPSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
X	747030	X_747030_SNP [dm3] X_852997_SNP [dm6]	T	C	4.162e^-4	0.611	INTRON CG43867
2L	22002842	2L_22002842_SNP [dm3] 2L_22002842_SNP [dm6]	T	C	4.178e^-4	0.611	INTERGENIC
X	647889	X_647889_SNP [dm3] X_753856_SNP [dm6]	C	A	4.181e^-4	0.611	UPSTREAM CG13361 INTRON CG5254
X	15377102	X_15377102_SNP [dm3] X_15483069_SNP [dm6]	A	C	4.182e^-4	0.611	INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4620750	3L_4620750_SNP [dm3] 3L_4620750_SNP [dm6]	A	G	4.188e^-4	0.611	UPSTREAM CG32246 INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7416460	3L_7416460_SNP [dm3] 3L_7423360_SNP [dm6]	C	A	4.198e^-4	0.611	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14317439	2R_14317439_SNP [dm3] 2R_18429934_SNP [dm6]	C	T	4.212e^-4	0.611	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
2R	8554986	2R_8554986_SNP [dm3] 2R_12667481_SNP [dm6]	G	C	4.254e^-4	0.611	INTRON nemy
2L	3483381	2L_3483381_SNP [dm3] 2L_3483381_SNP [dm6]	G	A	4.274e^-4	0.611	INTRON CG15414
3R	17863455	3R_17863455_SNP [dm3] 3R_22037733_SNP [dm6]	G	T	4.280e^-4	0.611	SYNONYMOUS_CODING pit	TF binding site mE1_TFBS_sens
3R	14966901	3R_14966901_SNP [dm3] 3R_19141179_SNP [dm6]	G	A	4.288e^-4	0.611	UTR_3_PRIME Ppcs
3R	3848259	3R_3848259_SNP [dm3] 3R_8022537_SNP [dm6]	T	C	4.288e^-4	0.611	INTRON CG2747
2L	14171824	2L_14171824_SNP [dm3] 2L_14171824_SNP [dm6]	A	G	4.317e^-4	0.611	INTRON CG43333
2L	14171838	2L_14171838_SNP [dm3] 2L_14171838_SNP [dm6]	C	T	4.317e^-4	0.611	INTRON CG43333
X	10728635	X_10728635_SNP [dm3] X_10834602_SNP [dm6]	A	G	4.363e^-4	0.611	SYNONYMOUS_CODING sbr
3R	3983151	3R_3983151_SNP [dm3] 3R_8157429_SNP [dm6]	T	A	4.381e^-4	0.611	INTRON grn	TF binding site mE1_TFBS_Kr
3L	18132024	3L_18132024_SNP [dm3] 3L_18138924_SNP [dm6]	T	G	4.391e^-4	0.611	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10134846	3L_10134846_SNP [dm3] 3L_10141746_SNP [dm6]	C	T	4.421e^-4	0.611	INTERGENIC
2L	17794600	2L_17794600_SNP [dm3] 2L_17794600_SNP [dm6]	C	G	4.445e^-4	0.611	SYNONYMOUS_CODING CadN2 DOWNSTREAM CR43419
2R	1302961	2R_1302961_SNP [dm3] 2R_5415456_SNP [dm6]	A	G	4.450e^-4	0.611	UPSTREAM laccase2 INTRON laccase2	TF binding site mE1_TFBS_kn
3L	6983174	3L_6983174_SNP [dm3] 3L_6990074_SNP [dm6]	A	G	4.457e^-4	0.611	UPSTREAM bin INTERGENIC
X	4511854	X_4511854_INS [dm3] X_4617821_INS [dm6]	C	CC	4.461e^-4	0.611	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6125749	3R_6125749_SNP [dm3] 3R_10300027_SNP [dm6]	C	G	4.483e^-4	0.611	UTR_3_PRIME CG43143 DOWNSTREAM CG43143 INTRON CG43143
3L	4147512	3L_4147512_DEL [dm3] 3L_4147512_DEL [dm6]	AGTGAAA	TT	4.488e^-4	0.611	INTERGENIC
3L	4147521	3L_4147521_SNP [dm3] 3L_4147521_SNP [dm6]	G	C	4.488e^-4	0.611	INTERGENIC
3R	13745317	3R_13745317_SNP [dm3] 3R_17919595_SNP [dm6]	C	A	4.489e^-4	0.611	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	17478487	2L_17478487_SNP [dm3] 2L_17478487_SNP [dm6]	T	C	4.514e^-4	0.611	UTR_3_PRIME fws UPSTREAM Aac11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17478558	2L_17478558_SNP [dm3] 2L_17478558_SNP [dm6]	G	T	4.514e^-4	0.611	NON_SYNONYMOUS_CODING fws UPSTREAM Aac11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9735552	3L_9735552_SNP [dm3] 3L_9742452_SNP [dm6]	T	C	4.532e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3L	10573342	3L_10573342_SNP [dm3] 3L_10580242_SNP [dm6]	G	A	4.533e^-4	0.611	INTRON A2bp1
3L	10577024	3L_10577024_SNP [dm3] 3L_10583924_SNP [dm6]	T	C	4.533e^-4	0.611	INTRON A2bp1
3L	10577506	3L_10577506_SNP [dm3] 3L_10584406_SNP [dm6]	T	A	4.533e^-4	0.611	INTRON A2bp1
2L	8983327	2L_8983327_SNP [dm3] 2L_8983327_SNP [dm6]	C	T	4.574e^-4	0.611	INTRON CG13101
3R	17640646	3R_17640646_SNP [dm3] 3R_21814924_SNP [dm6]	C	G	4.576e^-4	0.611	INTRON CASK
X	4333574	X_4333574_SNP [dm3] X_4439541_SNP [dm6]	G	C	4.579e^-4	0.611	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	18597687	3R_18597687_INS [dm3] 3R_22771965_INS [dm6]	A	AGCTGTGAATGATAGTTTC...	4.600e^-4	0.611	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
3R	15924494	3R_15924494_SNP [dm3] 3R_20098772_SNP [dm6]	C	T	4.617e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	19230561	2R_19230561_SNP [dm3] 2R_23343038_SNP [dm6]	C	T	4.628e^-4	0.611	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13346241	2L_13346241_SNP [dm3] 2L_13346241_SNP [dm6]	A	C	4.636e^-4	0.611	INTERGENIC
2L	13346242	2L_13346242_SNP [dm3] 2L_13346242_SNP [dm6]	A	C	4.636e^-4	0.611	INTERGENIC
2L	13346247	2L_13346247_SNP [dm3] 2L_13346247_SNP [dm6]	T	A	4.636e^-4	0.611	INTERGENIC
2R	10872630	2R_10872630_SNP [dm3] 2R_14985125_SNP [dm6]	A	T	4.643e^-4	0.611	UPSTREAM tRNA:CR30241 INTRON pcs
2R	19380563	2R_19380563_SNP [dm3] 2R_23493040_SNP [dm6]	C	G	4.672e^-4	0.611	INTERGENIC
2R	7322160	2R_7322160_SNP [dm3] 2R_11434655_SNP [dm6]	A	G	4.684e^-4	0.611	INTERGENIC
2L	4457196	2L_4457196_SNP [dm3] 2L_4457196_SNP [dm6]	A	G	4.697e^-4	0.611	UTR_3_PRIME RpL27A UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831	TF binding site BDTNP1_TFBS_dl
3L	3767879	3L_3767879_SNP [dm3] 3L_3767879_SNP [dm6]	G	T	4.699e^-4	0.611	INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	20124950	2L_20124950_SNP [dm3] 2L_20124950_SNP [dm6]	G	A	4.702e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11616978	3L_11616978_SNP [dm3] 3L_11623878_SNP [dm6]	A	T	4.704e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3R	11689669	3R_11689669_SNP [dm3] 3R_15863947_SNP [dm6]	T	G	4.720e^-4	0.611	INTRON CG31183
3R	10750598	3R_10750598_SNP [dm3] 3R_14924876_SNP [dm6]	C	T	4.744e^-4	0.611	INTERGENIC
2R	5792958	2R_5792958_SNP [dm3] 2R_9905453_SNP [dm6]	C	T	4.749e^-4	0.611	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
3L	20697362	3L_20697362_SNP [dm3] 3L_20704262_SNP [dm6]	A	G	4.761e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	20697424	3L_20697424_SNP [dm3] 3L_20704324_SNP [dm6]	G	A	4.761e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4147450	3L_4147450_SNP [dm3] 3L_4147450_SNP [dm6]	A	G	4.766e^-4	0.611	INTERGENIC
2R	12164527	2R_12164527_SNP [dm3] 2R_16277022_SNP [dm6]	C	T	4.773e^-4	0.611	SYNONYMOUS_CODING CG33017 UTR_3_PRIME CG33017 DOWNSTREAM cato
2L	1093911	2L_1093911_SNP [dm3] 2L_1093911_SNP [dm6]	C	A	4.775e^-4	0.611	INTRON CG4629
3L	3300565	3L_3300565_INS [dm3] 3L_3300565_INS [dm6]	C	TCGTTTTACT	4.782e^-4	0.611	INTRON CG14968
X	8925437	X_8925437_SNP [dm3] X_9031404_SNP [dm6]	G	C	4.788e^-4	0.611	INTRON CR43836 & 1 other
3R	10395319	3R_10395319_SNP [dm3] 3R_14569597_SNP [dm6]	T	C	4.798e^-4	0.611	SYNONYMOUS_CODING Cys UPSTREAM CG8066 DOWNSTREAM CG7987 EXON CR44095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17414336	2R_17414336_DEL [dm3] 2R_21526831_DEL [dm6]	CGGCC	C	4.824e^-4	0.611	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6984290	2L_6984290_SNP [dm3] 2L_6984290_SNP [dm6]	A	G	4.836e^-4	0.611	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21835312	3R_21835312_DEL [dm3] 3R_26009590_DEL [dm6]	CAGGCC	C	4.840e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_jumu mE1_TFBS_sens
X	12622851	X_12622851_DEL [dm3] X_12728818_DEL [dm6]	ATAA	A	4.847e^-4	0.611	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2R	13560325	2R_13560325_INS [dm3] 2R_17672820_INS [dm6]	C	CATAACAC	4.852e^-4	0.611	UPSTREAM P32 DOWNSTREAM Sema-1b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6987868	3L_6987868_SNP [dm3] 3L_6994768_SNP [dm6]	T	A	4.853e^-4	0.611	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8905963	3L_8905963_SNP [dm3] 3L_8912863_SNP [dm6]	A	C	4.855e^-4	0.611	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	8906005	3L_8906005_SNP [dm3] 3L_8912905_SNP [dm6]	G	T	4.855e^-4	0.611	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	26082852	3R_26082852_SNP [dm3] 3R_30257130_SNP [dm6]	A	T	4.861e^-4	0.611	INTERGENIC
2L	3079505	2L_3079505_SNP [dm3] 2L_3079505_SNP [dm6]	A	G	4.861e^-4	0.611	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3302429	2L_3302429_SNP [dm3] 2L_3302429_SNP [dm6]	G	A	4.877e^-4	0.611	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3895541	3L_3895541_SNP [dm3] 3L_3895541_SNP [dm6]	A	G	4.902e^-4	0.611	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
2R	15089211	2R_15089211_SNP [dm3] 2R_19201706_SNP [dm6]	T	A	4.904e^-4	0.611	INTRON hppy
2R	11591698	2R_11591698_SNP [dm3] 2R_15704193_SNP [dm6]	C	G	4.913e^-4	0.611	INTERGENIC
2R	6307733	2R_6307733_SNP [dm3] 2R_10420228_SNP [dm6]	A	T	4.938e^-4	0.611	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2276462	3L_2276462_SNP [dm3] 3L_2276462_SNP [dm6]	A	G	4.954e^-4	0.611	UPSTREAM yellow-g2 INTERGENIC
3L	9742348	3L_9742348_SNP [dm3] 3L_9749248_SNP [dm6]	A	G	4.961e^-4	0.611	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	2411846	3R_2411846_DEL [dm3] 3R_6586124_DEL [dm6]	CGTA	C	4.966e^-4	0.611	INTRON dpr11
3L	905183	3L_905183_SNP [dm3] 3L_905183_SNP [dm6]	G	A	4.977e^-4	0.611	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12335468	3L_12335468_SNP [dm3] 3L_12342368_SNP [dm6]	A	T	4.985e^-4	0.611	SPLICE_SITE_REGION CrzR INTRON CrzR
2R	12456759	2R_12456759_SNP [dm3] 2R_16569254_SNP [dm6]	T	C	5.007e^-4	0.611	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	893057	3L_893057_SNP [dm3] 3L_893057_SNP [dm6]	A	G	5.011e^-4	0.611	UTR_3_PRIME CG32479
3R	19045456	3R_19045456_SNP [dm3] 3R_23219734_SNP [dm6]	A	G	5.027e^-4	0.611	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19045461	3R_19045461_INS [dm3] 3R_23219739_INS [dm6]	G	GAAG	5.027e^-4	0.611	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19045636	3R_19045636_SNP [dm3] 3R_23219914_SNP [dm6]	A	C	5.027e^-4	0.611	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	1381406	3L_1381406_SNP [dm3] 3L_1381406_SNP [dm6]	G	A	5.048e^-4	0.611	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6456157	3L_6456157_SNP [dm3] 3L_6463057_SNP [dm6]	T	C	5.048e^-4	0.611	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7245703	3L_7245703_SNP [dm3] 3L_7252603_SNP [dm6]	A	G	5.054e^-4	0.611	DOWNSTREAM CR43470 INTRON CG14830
X	12261891	X_12261891_SNP [dm3] X_12367858_SNP [dm6]	G	A	5.055e^-4	0.611	INTERGENIC
3L	15026687	3L_15026687_SNP [dm3] 3L_15033587_SNP [dm6]	A	G	5.059e^-4	0.611	INTRON Sytbeta
2L	6139911	2L_6139911_SNP [dm3] 2L_6139911_SNP [dm6]	T	C	5.061e^-4	0.611	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12622861	X_12622861_SNP [dm3] X_12728828_SNP [dm6]	A	G	5.072e^-4	0.611	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10976922	3L_10976922_SNP [dm3] 3L_10983822_SNP [dm6]	A	G	5.082e^-4	0.611	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10976941	3L_10976941_SNP [dm3] 3L_10983841_SNP [dm6]	T	G	5.082e^-4	0.611	NON_SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6684626	3L_6684626_SNP [dm3] 3L_6691526_SNP [dm6]	G	A	5.082e^-4	0.611	SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad
3L	6685106	3L_6685106_SNP [dm3] 3L_6692006_SNP [dm6]	A	G	5.082e^-4	0.611	SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9390682	3R_9390682_SNP [dm3] 3R_13564960_SNP [dm6]	T	A	5.083e^-4	0.611	INTERGENIC
2L	5642525	2L_5642525_SNP [dm3] 2L_5642525_SNP [dm6]	A	C	5.084e^-4	0.611	DOWNSTREAM mir-963 & 1 other INTRON CG31646
X	1982093	X_1982093_SNP [dm3] X_2088060_SNP [dm6]	C	G	5.085e^-4	0.611	INTRON Unc-76
2R	19019344	2R_19019344_SNP [dm3] 2R_23131821_SNP [dm6]	C	T	5.085e^-4	0.611	INTERGENIC
3L	18131986	3L_18131986_INS [dm3] 3L_18138886_INS [dm6]	G	GG	5.093e^-4	0.611	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18132018	3L_18132018_SNP [dm3] 3L_18138918_SNP [dm6]	A	G	5.093e^-4	0.611	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4512197	X_4512197_SNP [dm3] X_4618164_SNP [dm6]	G	A	5.101e^-4	0.611	INTRON peb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9734597	3L_9734597_SNP [dm3] 3L_9741497_SNP [dm6]	T	A	5.101e^-4	0.611	INTRON CG42268 EXON CR44348
2R	11045479	2R_11045479_SNP [dm3] 2R_15157974_SNP [dm6]	T	A	5.110e^-4	0.611	INTRON igl
3R	1458507	3R_1458507_SNP [dm3] 3R_5632785_SNP [dm6]	A	G	5.116e^-4	0.611	SYNONYMOUS_CODING CG31549 UPSTREAM CG12171 DOWNSTREAM CG31551	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15924325	3R_15924325_SNP [dm3] 3R_20098603_SNP [dm6]	C	G	5.128e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	7611944	3L_7611944_SNP [dm3] 3L_7618844_SNP [dm6]	C	A	5.133e^-4	0.611	INTRON CG33275
3L	15026146	3L_15026146_SNP [dm3] 3L_15033046_SNP [dm6]	A	C	5.137e^-4	0.611	INTRON Sytbeta
3L	18887116	3L_18887116_SNP [dm3] 3L_18894016_SNP [dm6]	T	C	5.138e^-4	0.611	DOWNSTREAM NijB INTRON CG3902	TF binding site mE1_TFBS_cad
3L	18887153	3L_18887153_SNP [dm3] 3L_18894053_SNP [dm6]	T	C	5.138e^-4	0.611	DOWNSTREAM NijB INTRON CG3902	TF binding site mE1_TFBS_cad
2L	6146573	2L_6146573_SNP [dm3] 2L_6146573_SNP [dm6]	G	A	5.149e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	11120110	3R_11120110_SNP [dm3] 3R_15294388_SNP [dm6]	G	T	5.155e^-4	0.611	INTRON Tm1	TF binding site mE1_TFBS_HSA
2R	10244863	2R_10244863_SNP [dm3] 2R_14357358_SNP [dm6]	A	T	5.164e^-4	0.611	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	11343022	2L_11343022_SNP [dm3] 2L_11343022_SNP [dm6]	A	G	5.189e^-4	0.611	SYNONYMOUS_CODING CG14926	TF binding site BDTNP1_TFBS_da
X	16149045	X_16149045_SNP [dm3] X_16255012_SNP [dm6]	C	A	5.198e^-4	0.611	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10683807	3R_10683807_SNP [dm3] 3R_14858085_SNP [dm6]	C	G	5.212e^-4	0.611	INTRON btsz
3L	3826698	3L_3826698_SNP [dm3] 3L_3826698_SNP [dm6]	T	C	5.213e^-4	0.611	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_dl
3L	758736	3L_758736_SNP [dm3] 3L_758736_SNP [dm6]	T	A	5.214e^-4	0.611	INTERGENIC
2L	13032192	2L_13032192_SNP [dm3] 2L_13032192_SNP [dm6]	T	C	5.222e^-4	0.611	INTRON CG9932
X	658121	X_658121_SNP [dm3] X_764088_SNP [dm6]	G	A	5.255e^-4	0.611	UPSTREAM snoRNA:Psi18S-531 & 2 others INTRON RpL22	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	663990	X_663990_SNP [dm3] X_769957_SNP [dm6]	C	G	5.255e^-4	0.611	UTR_5_PRIME fz3 UPSTREAM fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	665113	X_665113_SNP [dm3] X_771080_SNP [dm6]	A	G	5.255e^-4	0.611	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16599850	X_16599850_INS [dm3] X_16705817_INS [dm6]	T	TGA	5.278e^-4	0.611	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3L	5494442	3L_5494442_SNP [dm3] 3L_5501342_SNP [dm6]	G	T	5.307e^-4	0.611	EXON CR44519
3L	7611935	3L_7611935_SNP [dm3] 3L_7618835_SNP [dm6]	T	A	5.310e^-4	0.611	INTRON CG33275
2R	7772404	2R_7772404_SNP [dm3] 2R_11884899_SNP [dm6]	T	G	5.317e^-4	0.611	NON_SYNONYMOUS_CODING CG13185	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	5.321e^-4	0.611	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
X	8055446	X_8055446_SNP [dm3] X_8161413_SNP [dm6]	A	T	5.327e^-4	0.611	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4510263	3L_4510263_SNP [dm3] 3L_4510263_SNP [dm6]	A	G	5.327e^-4	0.611	DOWNSTREAM Tie INTERGENIC
3L	11616971	3L_11616971_SNP [dm3] 3L_11623871_SNP [dm6]	G	A	5.360e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11616972	3L_11616972_INS [dm3] 3L_11623872_INS [dm6]	C	CTTTA	5.360e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11616975	3L_11616975_SNP [dm3] 3L_11623875_SNP [dm6]	A	C	5.360e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11616979	3L_11616979_SNP [dm3] 3L_11623879_SNP [dm6]	G	T	5.360e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11616986	3L_11616986_SNP [dm3] 3L_11623886_SNP [dm6]	T	A	5.360e^-4	0.611	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
X	1981256	X_1981256_SNP [dm3] X_2087223_SNP [dm6]	T	A	5.361e^-4	0.611	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl
3L	2915857	3L_2915857_SNP [dm3] 3L_2915857_SNP [dm6]	A	C	5.372e^-4	0.611	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo
2L	1093914	2L_1093914_SNP [dm3] 2L_1093914_SNP [dm6]	A	T	5.382e^-4	0.611	INTRON CG4629
2L	6989051	2L_6989051_SNP [dm3] 2L_6989051_SNP [dm6]	C	G	5.394e^-4	0.611	INTRON uif	TF binding site mE1_TFBS_HSA
3R	21448990	3R_21448990_SNP [dm3] 3R_25623268_SNP [dm6]	G	C	5.395e^-4	0.611	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
3R	21449017	3R_21449017_SNP [dm3] 3R_25623295_SNP [dm6]	A	G	5.395e^-4	0.611	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
3L	10422028	3L_10422028_SNP [dm3] 3L_10428928_SNP [dm6]	T	C	5.406e^-4	0.611	DOWNSTREAM Ir67b INTERGENIC
3L	785042	3L_785042_SNP [dm3] 3L_785042_SNP [dm6]	C	T	5.409e^-4	0.611	INTERGENIC
3L	6981107	3L_6981107_SNP [dm3] 3L_6988007_SNP [dm6]	A	T	5.415e^-4	0.611	INTERGENIC
2L	15395297	2L_15395297_SNP [dm3] 2L_15395297_SNP [dm6]	T	C	5.425e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16998785	2R_16998785_SNP [dm3] 2R_21111280_SNP [dm6]	T	C	5.429e^-4	0.611	INTRON ktub
2R	16998787	2R_16998787_SNP [dm3] 2R_21111282_SNP [dm6]	G	C	5.429e^-4	0.611	INTRON ktub
2L	3483370	2L_3483370_SNP [dm3] 2L_3483370_SNP [dm6]	A	T	5.443e^-4	0.611	INTRON CG15414
2R	14290236	2R_14290236_SNP [dm3] 2R_18402731_SNP [dm6]	G	A	5.470e^-4	0.611	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1286446	2R_1286446_SNP [dm3] 2R_5398941_SNP [dm6]	C	T	5.494e^-4	0.611	INTERGENIC
2R	1304274	2R_1304274_SNP [dm3] 2R_5416769_SNP [dm6]	A	T	5.494e^-4	0.611	INTRON laccase2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1321789	2R_1321789_SNP [dm3] 2R_5434284_SNP [dm6]	T	G	5.494e^-4	0.611	INTRON laccase2
3L	14205944	3L_14205944_SNP [dm3] 3L_14212844_SNP [dm6]	G	A	5.494e^-4	0.611	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	10843346	X_10843346_SNP [dm3] X_10949313_SNP [dm6]	T	C	5.500e^-4	0.611	DOWNSTREAM Rab9Fa INTRON Myo10A
2L	20120929	2L_20120929_DEL [dm3] 2L_20120929_DEL [dm6]	GAATAAGACGCA...	G	5.501e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	10090859	3L_10090859_SNP [dm3] 3L_10097759_SNP [dm6]	C	G	5.521e^-4	0.611	SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	3112577	3L_3112577_SNP [dm3] 3L_3112577_SNP [dm6]	T	A	5.533e^-4	0.611	INTRON CG45067
X	22006219	X_22006219_SNP [dm3] X_22604383_SNP [dm6]	T	A	5.546e^-4	0.611	INTRON Cda4
X	4510359	X_4510359_DEL [dm3] X_4616326_DEL [dm6]	CATACA	TG	5.556e^-4	0.611	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	26084392	3R_26084392_SNP [dm3] 3R_30258670_SNP [dm6]	T	G	5.563e^-4	0.611	INTERGENIC
2R	2939890	2R_2939890_SNP [dm3] 2R_7052385_SNP [dm6]	T	C	5.569e^-4	0.611	UPSTREAM Tsp42En DOWNSTREAM lbm INTERGENIC
3L	15975098	3L_15975098_SNP [dm3] 3L_15981998_SNP [dm6]	G	C	5.591e^-4	0.611	DOWNSTREAM CG17027 INTRON brm	TF binding site BDTNP1_TFBS_dl
2R	4902708	2R_4902708_SNP [dm3] 2R_9015203_SNP [dm6]	A	T	5.592e^-4	0.611	INTRON CG13744
2R	4902715	2R_4902715_SNP [dm3] 2R_9015210_SNP [dm6]	G	A	5.592e^-4	0.611	INTRON CG13744
2R	4902778	2R_4902778_SNP [dm3] 2R_9015273_SNP [dm6]	A	G	5.592e^-4	0.611	INTRON CG13744	TF binding site mE1_TFBS_cad
2R	4902783	2R_4902783_SNP [dm3] 2R_9015278_SNP [dm6]	A	T	5.592e^-4	0.611	INTRON CG13744	TF binding site mE1_TFBS_cad
2L	20129855	2L_20129855_SNP [dm3] 2L_20129855_SNP [dm6]	T	A	5.597e^-4	0.611	INTERGENIC
3L	910443	3L_910443_SNP [dm3] 3L_910443_SNP [dm6]	T	C	5.617e^-4	0.611	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_sna
2R	13697397	2R_13697397_SNP [dm3] 2R_17809892_SNP [dm6]	T	A	5.617e^-4	0.611	INTRON grh	TF binding site BDTNP1_TFBS_da
3R	17652546	3R_17652546_SNP [dm3] 3R_21826824_SNP [dm6]	A	G	5.622e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6983179	3L_6983179_SNP [dm3] 3L_6990079_SNP [dm6]	T	A	5.625e^-4	0.611	UPSTREAM bin INTERGENIC
3L	6983181	3L_6983181_SNP [dm3] 3L_6990081_SNP [dm6]	T	C	5.625e^-4	0.611	UPSTREAM bin INTERGENIC
3L	6983184	3L_6983184_SNP [dm3] 3L_6990084_SNP [dm6]	C	T	5.625e^-4	0.611	UPSTREAM bin INTERGENIC
2L	6301419	2L_6301419_SNP [dm3] 2L_6301419_SNP [dm6]	C	A	5.634e^-4	0.611	SYNONYMOUS_CODING Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9735738	3L_9735738_SNP [dm3] 3L_9742638_SNP [dm6]	C	G	5.652e^-4	0.611	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16770757	3R_16770757_SNP [dm3] 3R_20945035_SNP [dm6]	G	T	5.656e^-4	0.611	INTRON CG31191
2L	10915941	2L_10915941_SNP [dm3] 2L_10915941_SNP [dm6]	G	A	5.661e^-4	0.611	INTERGENIC
2R	10519336	2R_10519336_SNP [dm3] 2R_14631831_SNP [dm6]	A	G	5.661e^-4	0.611	DOWNSTREAM CG10131 INTERGENIC
2R	15348536	2R_15348536_SNP [dm3] 2R_19461031_SNP [dm6]	T	C	5.661e^-4	0.611	INTRON par-1
2R	6368500	2R_6368500_SNP [dm3] 2R_10480995_SNP [dm6]	T	C	5.661e^-4	0.611	UPSTREAM trsn DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6368828	2R_6368828_SNP [dm3] 2R_10481323_SNP [dm6]	C	T	5.661e^-4	0.611	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	6368838	2R_6368838_DEL [dm3] 2R_10481333_DEL [dm6]	TT	C	5.661e^-4	0.611	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	10976901	3L_10976901_SNP [dm3] 3L_10983801_SNP [dm6]	G	A	5.661e^-4	0.611	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11011822	3L_11011822_SNP [dm3] 3L_11018722_SNP [dm6]	A	C	5.661e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15645393	3L_15645393_SNP [dm3] 3L_15652293_SNP [dm6]	C	A	5.661e^-4	0.611	UPSTREAM Eig71Ed & 1 other DOWNSTREAM CG43084 INTERGENIC
X	8352063	X_8352063_SNP [dm3] X_8458030_SNP [dm6]	A	T	5.669e^-4	0.611	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
3R	16549319	3R_16549319_SNP [dm3] 3R_20723597_SNP [dm6]	G	A	5.676e^-4	0.611	INTERGENIC
2L	6148619	2L_6148619_SNP [dm3] 2L_6148619_SNP [dm6]	G	C	5.677e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6398702	3R_6398702_SNP [dm3] 3R_10572980_SNP [dm6]	T	C	5.682e^-4	0.611	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	14245329	3L_14245329_SNP [dm3] 3L_14252229_SNP [dm6]	G	T	5.685e^-4	0.611	INTERGENIC
3L	12622696	3L_12622696_SNP [dm3] 3L_12629596_SNP [dm6]	A	G	5.690e^-4	0.611	INTRON CR32111
2L	723842	2L_723842_SNP [dm3] 2L_723842_SNP [dm6]	A	T	5.700e^-4	0.611	INTERGENIC
2R	11983509	2R_11983509_INS [dm3] 2R_16096004_INS [dm6]	T	TTCTTGT	5.704e^-4	0.611	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4023526	3R_4023526_SNP [dm3] 3R_8197804_SNP [dm6]	A	T	5.708e^-4	0.611	UPSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
2R	4356766	2R_4356766_SNP [dm3] 2R_8469261_SNP [dm6]	C	T	5.708e^-4	0.611	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
3R	14877721	3R_14877721_INS [dm3] 3R_19051999_INS [dm6]	A	AACATGGTCCTGGAG...	5.718e^-4	0.611	INTRON cdi
2R	1153334	2R_1153334_SNP [dm3] 2R_5265829_SNP [dm6]	T	A	5.718e^-4	0.611	INTRON d4	transposable element FlyBase
2L	18359325	2L_18359325_SNP [dm3] 2L_18359325_SNP [dm6]	A	T	5.736e^-4	0.611	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
2R	10004160	2R_10004160_SNP [dm3] 2R_14116655_SNP [dm6]	C	T	5.739e^-4	0.611	INTRON Prosap
2L	4444154	2L_4444154_SNP [dm3] 2L_4444154_SNP [dm6]	A	G	5.781e^-4	0.611	NON_SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	4316915	X_4316915_SNP [dm3] X_4422882_SNP [dm6]	A	C	5.783e^-4	0.611	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	9734673	3L_9734673_SNP [dm3] 3L_9741573_SNP [dm6]	A	T	5.786e^-4	0.611	INTRON CG42268 & 1 other
X	3518873	X_3518873_SNP [dm3] X_3624840_SNP [dm6]	A	T	5.796e^-4	0.611	INTRON AstA-R1
X	3519197	X_3519197_SNP [dm3] X_3625164_SNP [dm6]	T	G	5.796e^-4	0.611	INTRON AstA-R1
2L	22001695	2L_22001695_DEL [dm3] 2L_22001695_DEL [dm6]	AAAATGACAACAATGAGCGT...	A	5.803e^-4	0.611	INTERGENIC
3L	13142483	3L_13142483_SNP [dm3] 3L_13149383_SNP [dm6]	C	T	5.824e^-4	0.611	INTERGENIC
2R	9766255	2R_9766255_SNP [dm3] 2R_13878750_SNP [dm6]	C	G	5.857e^-4	0.611	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14397356	2L_14397356_SNP [dm3] 2L_14397356_SNP [dm6]	G	A	5.864e^-4	0.611	INTRON elB
2R	13401510	2R_13401510_SNP [dm3] 2R_17514005_SNP [dm6]	T	G	5.870e^-4	0.611	UPSTREAM CG4853 DOWNSTREAM CG4847 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
2L	14334819	2L_14334819_SNP [dm3] 2L_14334819_SNP [dm6]	C	T	5.891e^-4	0.611	DOWNSTREAM ms_2_34Fe INTRON CG33090
2L	14334821	2L_14334821_SNP [dm3] 2L_14334821_SNP [dm6]	G	A	5.891e^-4	0.611	DOWNSTREAM ms_2_34Fe INTRON CG33090
2L	14171807	2L_14171807_INS [dm3] 2L_14171807_INS [dm6]	C	CC	5.893e^-4	0.611	INTRON CG43333
2L	14171825	2L_14171825_SNP [dm3] 2L_14171825_SNP [dm6]	C	T	5.893e^-4	0.611	INTRON CG43333
2L	7432840	2L_7432840_SNP [dm3] 2L_7432840_SNP [dm6]	A	G	5.898e^-4	0.611	INTRON CG5958
3R	18605560	3R_18605560_SNP [dm3] 3R_22779838_SNP [dm6]	C	G	5.907e^-4	0.611	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17854445	3R_17854445_SNP [dm3] 3R_22028723_SNP [dm6]	T	C	5.911e^-4	0.611	SYNONYMOUS_CODING ND42 DOWNSTREAM CG13409	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2351646	3R_2351646_SNP [dm3] 3R_6525924_SNP [dm6]	C	T	5.928e^-4	0.611	INTERGENIC
3L	20189765	3L_20189765_SNP [dm3] 3L_20196665_SNP [dm6]	C	T	5.933e^-4	0.611	INTRON CG42674
2L	15821662	2L_15821662_SNP [dm3] 2L_15821662_SNP [dm6]	G	C	5.936e^-4	0.611	DOWNSTREAM CR44601 INTERGENIC
2L	7076895	2L_7076895_SNP [dm3] 2L_7076895_SNP [dm6]	T	G	5.945e^-4	0.611	INTRON Pvf2
2R	6986036	2R_6986036_SNP [dm3] 2R_11098531_SNP [dm6]	G	T	5.948e^-4	0.611	INTRON luna
2L	6791729	2L_6791729_SNP [dm3] 2L_6791729_SNP [dm6]	C	G	5.964e^-4	0.611	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15760083	2L_15760083_SNP [dm3] 2L_15760083_SNP [dm6]	T	A	5.970e^-4	0.611	INTRON Gli	TF binding site mE1_TFBS_cad
2R	9569742	2R_9569742_SNP [dm3] 2R_13682237_SNP [dm6]	C	A	5.970e^-4	0.611	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9569760	2R_9569760_SNP [dm3] 2R_13682255_SNP [dm6]	C	A	5.970e^-4	0.611	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4273864	2R_4273864_DEL [dm3] 2R_8386359_DEL [dm6]	AA	A	5.982e^-4	0.611	INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3691526	3L_3691526_SNP [dm3] 3L_3691526_SNP [dm6]	G	A	5.991e^-4	0.611	INTERGENIC
2L	13439213	2L_13439213_SNP [dm3] 2L_13439213_SNP [dm6]	T	C	5.995e^-4	0.611	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
3R	16898224	3R_16898224_SNP [dm3] 3R_21072502_SNP [dm6]	G	C	5.999e^-4	0.611	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16898290	3R_16898290_SNP [dm3] 3R_21072568_SNP [dm6]	C	G	5.999e^-4	0.611	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9544121	3R_9544121_INS [dm3] 3R_13718399_INS [dm6]	A	AA	5.999e^-4	0.611	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	17505134	2L_17505134_SNP [dm3] 2L_17505134_SNP [dm6]	T	C	6.014e^-4	0.611	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_sens
2L	5389190	2L_5389190_SNP [dm3] 2L_5389190_SNP [dm6]	A	T	6.014e^-4	0.611	DOWNSTREAM CR44745 INTERGENIC
2L	5389199	2L_5389199_SNP [dm3] 2L_5389199_SNP [dm6]	G	A	6.014e^-4	0.611	DOWNSTREAM CR44745 INTERGENIC
2L	5389236	2L_5389236_DEL [dm3] 2L_5389236_DEL [dm6]	AA	A	6.014e^-4	0.611	DOWNSTREAM CR44745 INTERGENIC
2R	6787192	2R_6787192_SNP [dm3] 2R_10899687_SNP [dm6]	C	G	6.017e^-4	0.611	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15089199	2R_15089199_SNP [dm3] 2R_19201694_SNP [dm6]	A	C	6.027e^-4	0.611	INTRON hppy
3L	3486652	3L_3486652_SNP [dm3] 3L_3486652_SNP [dm6]	T	A	6.034e^-4	0.611	INTRON CG42324
3R	22327910	3R_22327910_SNP [dm3] 3R_26502188_SNP [dm6]	T	C	6.048e^-4	0.611	INTRON plum
2L	657761	2L_657761_SNP [dm3] 2L_657761_SNP [dm6]	G	T	6.055e^-4	0.611	INTRON ds
3R	25776970	3R_25776970_SNP [dm3] 3R_29951248_SNP [dm6]	G	A	6.064e^-4	0.611	UTR_3_PRIME TkR99D
2L	8582176	2L_8582176_SNP [dm3] 2L_8582176_SNP [dm6]	A	C	6.076e^-4	0.611	INTRON Sema-1a
3L	14205950	3L_14205950_SNP [dm3] 3L_14212850_SNP [dm6]	G	A	6.101e^-4	0.611	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	7791148	X_7791148_DEL [dm3] X_7897115_DEL [dm6]	ATTGAAATAATTAATTA...	GGG	6.107e^-4	0.611	DOWNSTREAM CR11386 & 1 other INTERGENIC
2R	11227422	2R_11227422_SNP [dm3] 2R_15339917_SNP [dm6]	C	T	6.118e^-4	0.611	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3883986	2L_3883986_SNP [dm3] 2L_3883986_SNP [dm6]	G	A	6.123e^-4	0.611	INTRON capu	TF binding site mE1_TFBS_cad
2L	3301053	2L_3301053_SNP [dm3] 2L_3301053_SNP [dm6]	T	A	6.135e^-4	0.611	INTRON CG9663
2L	3301058	2L_3301058_SNP [dm3] 2L_3301058_SNP [dm6]	A	T	6.135e^-4	0.611	INTRON CG9663
2L	15395051	2L_15395051_SNP [dm3] 2L_15395051_SNP [dm6]	T	A	6.155e^-4	0.611	INTERGENIC
3L	8976382	3L_8976382_INS [dm3] 3L_8983282_INS [dm6]	A	AAT	6.174e^-4	0.611	UTR_3_PRIME Galk DOWNSTREAM CG13314	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8976384	3L_8976384_DEL [dm3] 3L_8983284_DEL [dm6]	CG	C	6.174e^-4	0.611	UTR_3_PRIME Galk DOWNSTREAM CG13314	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	6129471	3R_6129471_SNP [dm3] 3R_10303749_SNP [dm6]	T	C	6.176e^-4	0.611	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG43143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19130182	3L_19130182_SNP [dm3] 3L_19137082_SNP [dm6]	A	G	6.201e^-4	0.611	INTRON CG14082
2R	4469438	2R_4469438_SNP [dm3] 2R_8581933_SNP [dm6]	G	A	6.210e^-4	0.611	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	651627	X_651627_SNP [dm3] X_757594_SNP [dm6]	C	T	6.218e^-4	0.611	INTRON CG5254
X	651633	X_651633_SNP [dm3] X_757600_SNP [dm6]	T	C	6.218e^-4	0.611	INTRON CG5254
X	651634	X_651634_DEL [dm3] X_757601_DEL [dm6]	ACATA	A	6.218e^-4	0.611	INTRON CG5254
2L	5787804	2L_5787804_SNP [dm3] 2L_5787804_SNP [dm6]	A	C	6.219e^-4	0.611	INTRON CG9171
2L	20135706	2L_20135706_SNP [dm3] 2L_20135706_SNP [dm6]	G	C	6.231e^-4	0.611	UPSTREAM CG10651 INTERGENIC
3L	3770859	3L_3770859_SNP [dm3] 3L_3770859_SNP [dm6]	A	G	6.255e^-4	0.611	INTRON CG32264
2L	18891221	2L_18891221_SNP [dm3] 2L_18891221_SNP [dm6]	A	G	6.256e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6377704	2L_6377704_SNP [dm3] 2L_6377704_SNP [dm6]	T	G	6.261e^-4	0.611	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3451667	3L_3451667_SNP [dm3] 3L_3451667_SNP [dm6]	C	T	6.271e^-4	0.611	INTRON eIF5B
2L	6351407	2L_6351407_SNP [dm3] 2L_6351407_SNP [dm6]	T	C	6.271e^-4	0.611	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
X	15394662	X_15394662_SNP [dm3] X_15500629_SNP [dm6]	T	C	6.289e^-4	0.611	INTRON Gmap
2L	3482029	2L_3482029_SNP [dm3] 2L_3482029_SNP [dm6]	T	C	6.295e^-4	0.611	INTRON CG15414	TF binding site mE1_TFBS_cad
2L	4454571	2L_4454571_SNP [dm3] 2L_4454571_SNP [dm6]	G	T	6.295e^-4	0.611	UPSTREAM CG15434 & 1 other DOWNSTREAM Gs1l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	2614606	3L_2614606_SNP [dm3] 3L_2614606_SNP [dm6]	T	G	6.295e^-4	0.611	INTRON Pxn
3L	3767201	3L_3767201_SNP [dm3] 3L_3767201_SNP [dm6]	C	T	6.296e^-4	0.611	SYNONYMOUS_CODING CG32264	TF binding site mE1_TFBS_bab1
2R	17475300	2R_17475300_SNP [dm3] 2R_21587795_SNP [dm6]	T	G	6.297e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad
2L	525446	2L_525446_SNP [dm3] 2L_525446_SNP [dm6]	T	C	6.306e^-4	0.611	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	9319166	3L_9319166_SNP [dm3] 3L_9326066_SNP [dm6]	T	C	6.310e^-4	0.611	INTERGENIC
X	14875842	X_14875842_SNP [dm3] X_14981809_SNP [dm6]	C	T	6.312e^-4	0.611	INTRON eag
2R	17366027	2R_17366027_SNP [dm3] 2R_21478522_SNP [dm6]	G	A	6.349e^-4	0.611	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8428545	2L_8428545_SNP [dm3] 2L_8428545_SNP [dm6]	C	T	6.359e^-4	0.611	NON_SYNONYMOUS_CODING Akap200 INTRON Akap200	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	8707391	2L_8707391_SNP [dm3] 2L_8707391_SNP [dm6]	G	A	6.364e^-4	0.611	UTR_3_PRIME CG9314 INTRON Hnf4
3R	25776954	3R_25776954_SNP [dm3] 3R_29951232_SNP [dm6]	C	T	6.392e^-4	0.611	UTR_3_PRIME TkR99D
3L	10881097	3L_10881097_SNP [dm3] 3L_10887997_SNP [dm6]	C	T	6.398e^-4	0.611	INTERGENIC
X	8658774	X_8658774_SNP [dm3] X_8764741_SNP [dm6]	T	G	6.406e^-4	0.611	INTRON Lim1
2L	6791226	2L_6791226_SNP [dm3] 2L_6791226_SNP [dm6]	G	A	6.416e^-4	0.611	SYNONYMOUS_CODING nrv2	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
X	3988540	X_3988540_SNP [dm3] X_4094507_SNP [dm6]	G	C	6.416e^-4	0.611	INTERGENIC
2L	12853909	2L_12853909_SNP [dm3] 2L_12853909_SNP [dm6]	G	A	6.417e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1600299	X_1600299_SNP [dm3] X_1706266_SNP [dm6]	T	C	6.442e^-4	0.611	INTERGENIC
3L	17693127	3L_17693127_SNP [dm3] 3L_17700027_SNP [dm6]	C	T	6.461e^-4	0.611	INTRON Ccn
2R	19377218	2R_19377218_SNP [dm3] 2R_23489695_SNP [dm6]	C	T	6.514e^-4	0.611	INTRON CG43795
2L	7710534	2L_7710534_SNP [dm3] 2L_7710534_SNP [dm6]	T	G	6.531e^-4	0.611	UTR_3_PRIME Tep3 UPSTREAM Ntl & 2 others	TF binding site mE1_TFBS_cad
2L	7710549	2L_7710549_SNP [dm3] 2L_7710549_SNP [dm6]	T	C	6.531e^-4	0.611	UTR_3_PRIME Tep3 UPSTREAM Ntl & 2 others	TF binding site mE1_TFBS_cad
3R	17552598	3R_17552598_SNP [dm3] 3R_21726876_SNP [dm6]	A	T	6.536e^-4	0.611	INTERGENIC
2L	8571176	2L_8571176_DEL [dm3] 2L_8571176_DEL [dm6]	GATGGAGG	G	6.559e^-4	0.611	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site mE1_TFBS_HSA
2L	8571204	2L_8571204_SNP [dm3] 2L_8571204_SNP [dm6]	T	G	6.559e^-4	0.611	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site mE1_TFBS_HSA
X	20492792	X_20492792_SNP [dm3] X_20621765_SNP [dm6]	T	G	6.563e^-4	0.611	INTRON RunxA
X	20492799	X_20492799_SNP [dm3] X_20621772_SNP [dm6]	A	T	6.563e^-4	0.611	INTRON RunxA
X	20492824	X_20492824_SNP [dm3] X_20621797_SNP [dm6]	C	A	6.563e^-4	0.611	INTRON RunxA
3R	20327574	3R_20327574_SNP [dm3] 3R_24501852_SNP [dm6]	C	T	6.592e^-4	0.611	INTERGENIC
3R	16770719	3R_16770719_SNP [dm3] 3R_20944997_SNP [dm6]	A	C	6.594e^-4	0.611	INTRON CG31191
3R	7493768	3R_7493768_SNP [dm3] 3R_11668046_SNP [dm6]	A	G	6.632e^-4	0.611	NON_SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_sens
3R	2502146	3R_2502146_SNP [dm3] 3R_6676424_SNP [dm6]	A	T	6.633e^-4	0.611	INTRON lab	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	15102482	2R_15102482_SNP [dm3] 2R_19214977_SNP [dm6]	C	A	6.643e^-4	0.611	INTRON hppy
3L	15026385	3L_15026385_SNP [dm3] 3L_15033285_SNP [dm6]	G	C	6.646e^-4	0.611	INTRON Sytbeta
3L	14497779	3L_14497779_SNP [dm3] 3L_14504679_SNP [dm6]	T	A	6.663e^-4	0.611	INTRON bbg
3L	4509082	3L_4509082_SNP [dm3] 3L_4509082_SNP [dm6]	C	A	6.666e^-4	0.611	UPSTREAM NT1 INTERGENIC
2R	19304235	2R_19304235_SNP [dm3] 2R_23416712_SNP [dm6]	A	T	6.679e^-4	0.611	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10681502	3R_10681502_DEL [dm3] 3R_14855780_DEL [dm6]	AA	A	6.683e^-4	0.611	INTRON btsz
2R	20390488	2R_20390488_SNP [dm3] 2R_24502965_SNP [dm6]	G	T	6.699e^-4	0.611	UPSTREAM Prosalpha4T2 INTERGENIC
3R	10701569	3R_10701569_SNP [dm3] 3R_14875847_SNP [dm6]	T	A	6.720e^-4	0.611	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10701570	3R_10701570_SNP [dm3] 3R_14875848_SNP [dm6]	A	T	6.720e^-4	0.611	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	6.724e^-4	0.611	INTRON dac	regulatory region REDfly_CRMs
3L	1183184	3L_1183184_INS [dm3] 3L_1183184_INS [dm6]	C	CGC	6.734e^-4	0.611	INTERGENIC
3R	17284940	3R_17284940_SNP [dm3] 3R_21459218_SNP [dm6]	G	A	6.739e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2421135	3R_2421135_SNP [dm3] 3R_6595413_SNP [dm6]	T	G	6.763e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16738843	2R_16738843_SNP [dm3] 2R_20851338_SNP [dm6]	G	A	6.765e^-4	0.611	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_sens
2L	22025766	2L_22025766_SNP [dm3] 2L_22025766_SNP [dm6]	A	G	6.772e^-4	0.611	DOWNSTREAM tio INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	10466982	2L_10466982_SNP [dm3] 2L_10466982_SNP [dm6]	A	C	6.777e^-4	0.611	INTRON RluA-1
2L	2321496	2L_2321496_SNP [dm3] 2L_2321496_SNP [dm6]	G	A	6.777e^-4	0.611	INTRON CG9967 & 1 other
2L	2321502	2L_2321502_SNP [dm3] 2L_2321502_SNP [dm6]	T	G	6.777e^-4	0.611	INTRON CG9967 & 1 other
2L	4747885	2L_4747885_SNP [dm3] 2L_4747885_SNP [dm6]	C	A	6.777e^-4	0.611	INTRON CG15630
2L	4755861	2L_4755861_SNP [dm3] 2L_4755861_SNP [dm6]	C	A	6.777e^-4	0.611	INTRON CG15630
2L	4755863	2L_4755863_DEL [dm3] 2L_4755863_DEL [dm6]	AA	A	6.777e^-4	0.611	INTRON CG15630
2L	6412664	2L_6412664_SNP [dm3] 2L_6412664_SNP [dm6]	G	C	6.777e^-4	0.611	UTR_5_PRIME CG13982	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12625243	2L_12625243_SNP [dm3] 2L_12625243_SNP [dm6]	A	G	6.780e^-4	0.611	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
3L	2602737	3L_2602737_SNP [dm3] 3L_2602737_SNP [dm6]	A	C	6.789e^-4	0.611	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10901892	3R_10901892_SNP [dm3] 3R_15076170_SNP [dm6]	C	G	6.821e^-4	0.611	UTR_5_PRIME dpr9
2R	10244971	2R_10244971_SNP [dm3] 2R_14357466_SNP [dm6]	C	G	6.833e^-4	0.611	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	9376145	2R_9376145_SNP [dm3] 2R_13488640_SNP [dm6]	T	A	6.852e^-4	0.611	INTRON bbc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15330156	X_15330156_SNP [dm3] X_15436123_SNP [dm6]	A	T	6.868e^-4	0.611	INTRON Cngl
3L	10260442	3L_10260442_SNP [dm3] 3L_10267342_SNP [dm6]	T	C	6.870e^-4	0.611	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3R	9442358	3R_9442358_SNP [dm3] 3R_13616636_SNP [dm6]	A	G	6.879e^-4	0.611	DOWNSTREAM CG9269 INTERGENIC
3L	4745639	3L_4745639_SNP [dm3] 3L_4745639_SNP [dm6]	T	G	6.879e^-4	0.611	DOWNSTREAM CR43882 INTRON RhoGEF64C
3L	15050885	3L_15050885_SNP [dm3] 3L_15057785_SNP [dm6]	T	C	6.903e^-4	0.611	INTRON Sytbeta
3L	9762287	3L_9762287_SNP [dm3] 3L_9769187_SNP [dm6]	G	T	6.913e^-4	0.611	INTRON CG8177
2R	5347503	2R_5347503_SNP [dm3] 2R_9459998_SNP [dm6]	C	T	6.915e^-4	0.611	INTRON Camta	TF binding site mE1_TFBS_inv
2R	11473482	2R_11473482_SNP [dm3] 2R_15585977_SNP [dm6]	C	T	6.922e^-4	0.611	INTERGENIC
2L	6939830	2L_6939830_DEL [dm3] 2L_6939830_DEL [dm6]	CGA	G	6.957e^-4	0.611	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	6548884	3L_6548884_SNP [dm3] 3L_6555784_SNP [dm6]	A	C	6.964e^-4	0.611	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20057003	2L_20057003_SNP [dm3] 2L_20057003_SNP [dm6]	G	A	6.965e^-4	0.611	DOWNSTREAM sNPF INTERGENIC
2L	6349445	2L_6349445_SNP [dm3] 2L_6349445_SNP [dm6]	A	C	6.987e^-4	0.611	UTR_3_PRIME CG9498
3L	3390456	3L_3390456_SNP [dm3] 3L_3390456_SNP [dm6]	C	G	6.992e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3390458	3L_3390458_SNP [dm3] 3L_3390458_SNP [dm6]	A	T	6.992e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9563078	3L_9563078_SNP [dm3] 3L_9569978_SNP [dm6]	G	T	6.993e^-4	0.611	INTRON CG42673
3L	9563089	3L_9563089_SNP [dm3] 3L_9569989_SNP [dm6]	A	G	6.993e^-4	0.611	INTRON CG42673
3L	9563105	3L_9563105_SNP [dm3] 3L_9570005_SNP [dm6]	G	C	6.993e^-4	0.611	INTRON CG42673
3L	9563154	3L_9563154_SNP [dm3] 3L_9570054_SNP [dm6]	T	A	6.993e^-4	0.611	INTRON CG42673
3L	8801459	3L_8801459_SNP [dm3] 3L_8808359_SNP [dm6]	A	T	7.004e^-4	0.611	UTR_3_PRIME CG32024 UPSTREAM CG13308
3L	8801487	3L_8801487_SNP [dm3] 3L_8808387_SNP [dm6]	A	C	7.004e^-4	0.611	UTR_3_PRIME CG32024 UPSTREAM CG13308
3R	21476000	3R_21476000_SNP [dm3] 3R_25650278_SNP [dm6]	C	A	7.027e^-4	0.611	UTR_3_PRIME jigr1 DOWNSTREAM jigr1	TF binding site mE1_TFBS_cad
2L	21923020	2L_21923020_SNP [dm3] 2L_21923020_SNP [dm6]	G	A	7.079e^-4	0.611	INTERGENIC	transposable element FlyBase
2L	19689868	2L_19689868_SNP [dm3] 2L_19689868_SNP [dm6]	C	T	7.081e^-4	0.611	INTRON Lar
2L	19689890	2L_19689890_SNP [dm3] 2L_19689890_SNP [dm6]	A	G	7.081e^-4	0.611	INTRON Lar
2L	15564625	2L_15564625_SNP [dm3] 2L_15564625_SNP [dm6]	G	A	7.088e^-4	0.611	INTRON kek3
2L	4367939	2L_4367939_SNP [dm3] 2L_4367939_SNP [dm6]	C	T	7.112e^-4	0.611	INTRON Traf4	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	7.119e^-4	0.611	INTERGENIC
2R	10303555	2R_10303555_SNP [dm3] 2R_14416050_SNP [dm6]	C	G	7.122e^-4	0.611	INTERGENIC
2L	5643152	2L_5643152_DEL [dm3] 2L_5643152_DEL [dm6]	AAG	A	7.131e^-4	0.611	DOWNSTREAM mir-964 INTRON CG31646
X	9425787	X_9425787_SNP [dm3] X_9531754_SNP [dm6]	T	C	7.132e^-4	0.611	INTRON CG32700
2L	9947492	2L_9947492_SNP [dm3] 2L_9947492_SNP [dm6]	A	T	7.161e^-4	0.611	START_GAINED CG5853 UTR_5_PRIME CG5853 UPSTREAM CG5853
3L	10678275	3L_10678275_SNP [dm3] 3L_10685175_SNP [dm6]	A	G	7.171e^-4	0.611	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	922601	2L_922601_SNP [dm3] 2L_922601_SNP [dm6]	A	T	7.173e^-4	0.611	UPSTREAM CG4341 INTERGENIC
3L	7098096	3L_7098096_SNP [dm3] 3L_7104996_SNP [dm6]	G	A	7.203e^-4	0.611	INTRON form3
3R	23137358	3R_23137358_SNP [dm3] 3R_27311636_SNP [dm6]	C	T	7.214e^-4	0.611	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4510239	3L_4510239_DEL [dm3] 3L_4510239_DEL [dm6]	AA	A	7.231e^-4	0.611	DOWNSTREAM Tie INTERGENIC
2R	19148885	2R_19148885_SNP [dm3] 2R_23261362_SNP [dm6]	A	G	7.234e^-4	0.611	INTERGENIC
3R	21448869	3R_21448869_SNP [dm3] 3R_25623147_SNP [dm6]	G	A	7.247e^-4	0.611	INTRON Npl4	TF binding site mE1_TFBS_sens
2R	7297637	2R_7297637_SNP [dm3] 2R_11410132_SNP [dm6]	T	G	7.252e^-4	0.611	NON_SYNONYMOUS_CODING CG34054 UPSTREAM CG30026	TF binding site mE1_TFBS_bab1
3L	10045569	3L_10045569_SNP [dm3] 3L_10052469_SNP [dm6]	T	C	7.253e^-4	0.611	INTRON dpr6
3L	8959933	3L_8959933_SNP [dm3] 3L_8966833_SNP [dm6]	A	T	7.255e^-4	0.611	UTR_5_PRIME CG5021 UPSTREAM CG5653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2019279	2L_2019279_SNP [dm3] 2L_2019279_SNP [dm6]	T	G	7.265e^-4	0.611	INTRON CG4238	TF binding site BDTNP1_TFBS_da
2R	12456774	2R_12456774_SNP [dm3] 2R_16569269_SNP [dm6]	A	C	7.286e^-4	0.611	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4510393	X_4510393_SNP [dm3] X_4616360_SNP [dm6]	A	C	7.297e^-4	0.611	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3421118	3L_3421118_SNP [dm3] 3L_3421118_SNP [dm6]	G	C	7.299e^-4	0.611	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3421121	3L_3421121_SNP [dm3] 3L_3421121_SNP [dm6]	A	G	7.299e^-4	0.611	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9965089	2R_9965089_SNP [dm3] 2R_14077584_SNP [dm6]	T	C	7.309e^-4	0.611	INTRON Prosap
X	9218524	X_9218524_SNP [dm3] X_9324491_SNP [dm6]	A	T	7.310e^-4	0.611	DOWNSTREAM CG34449 & 1 other INTERGENIC
X	4316916	X_4316916_SNP [dm3] X_4422883_SNP [dm6]	T	C	7.319e^-4	0.611	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	14206195	3L_14206195_SNP [dm3] 3L_14213095_SNP [dm6]	C	T	7.329e^-4	0.611	SYNONYMOUS_CODING nuf UTR_5_PRIME nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17122259	2L_17122259_SNP [dm3] 2L_17122259_SNP [dm6]	C	A	7.344e^-4	0.611	INTERGENIC
3R	4447826	3R_4447826_SNP [dm3] 3R_8622104_SNP [dm6]	T	C	7.352e^-4	0.611	INTRON 5-HT2B
2R	1308539	2R_1308539_SNP [dm3] 2R_5421034_SNP [dm6]	C	T	7.367e^-4	0.611	INTRON laccase2
3L	5135806	3L_5135806_DEL [dm3] 3L_5142706_DEL [dm6]	CGC	C	7.369e^-4	0.611	INTRON CG4623
3L	5135810	3L_5135810_MNP [dm3] 3L_5142710_MNP [dm6]	ATT	GGC	7.369e^-4	0.611	INTRON CG4623
3L	16448350	3L_16448350_SNP [dm3] 3L_16455250_SNP [dm6]	A	G	7.379e^-4	0.611	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13128813	X_13128813_SNP [dm3] X_13234780_SNP [dm6]	A	T	7.380e^-4	0.611	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	6368835	2R_6368835_SNP [dm3] 2R_10481330_SNP [dm6]	G	T	7.382e^-4	0.611	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	2412474	3L_2412474_SNP [dm3] 3L_2412474_SNP [dm6]	A	G	7.386e^-4	0.611	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8250197	2L_8250197_SNP [dm3] 2L_8250197_SNP [dm6]	A	T	7.392e^-4	0.611	INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	19272880	2L_19272880_SNP [dm3] 2L_19272880_SNP [dm6]	A	G	7.408e^-4	0.611	UPSTREAM CR44190 INTERGENIC
3L	12027404	3L_12027404_SNP [dm3] 3L_12034304_SNP [dm6]	T	G	7.408e^-4	0.611	INTRON rols
X	744238	X_744238_SNP [dm3] X_850205_SNP [dm6]	C	T	7.408e^-4	0.611	INTRON CG43867
2L	8707182	2L_8707182_SNP [dm3] 2L_8707182_SNP [dm6]	T	C	7.418e^-4	0.611	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3L	3446174	3L_3446174_DEL [dm3] 3L_3446174_DEL [dm6]	ATCA	A	7.420e^-4	0.611	INTRON eIF5B
3L	3446199	3L_3446199_SNP [dm3] 3L_3446199_SNP [dm6]	T	A	7.420e^-4	0.611	INTRON eIF5B
3L	3446252	3L_3446252_SNP [dm3] 3L_3446252_SNP [dm6]	T	G	7.420e^-4	0.611	INTRON eIF5B
3L	3446255	3L_3446255_SNP [dm3] 3L_3446255_SNP [dm6]	C	T	7.420e^-4	0.611	INTRON eIF5B
3L	3446274	3L_3446274_SNP [dm3] 3L_3446274_SNP [dm6]	A	G	7.420e^-4	0.611	INTRON eIF5B
3R	24158746	3R_24158746_SNP [dm3] 3R_28333024_SNP [dm6]	G	A	7.429e^-4	0.611	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19600210	3R_19600210_SNP [dm3] 3R_23774488_SNP [dm6]	G	A	7.466e^-4	0.611	UTR_3_PRIME Nup98-96 UPSTREAM CG10208
3R	19021889	3R_19021889_DEL [dm3] 3R_23196167_DEL [dm6]	ATAA	A	7.468e^-4	0.611	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8554030	2R_8554030_SNP [dm3] 2R_12666525_SNP [dm6]	G	A	7.473e^-4	0.611	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_bab1
3L	3420933	3L_3420933_SNP [dm3] 3L_3420933_SNP [dm6]	C	G	7.478e^-4	0.611	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	2533923	3L_2533923_SNP [dm3] 3L_2533923_SNP [dm6]	C	A	7.504e^-4	0.611	INTRON Spn
3R	17634157	3R_17634157_SNP [dm3] 3R_21808435_SNP [dm6]	T	C	7.505e^-4	0.611	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4793872	X_4793872_SNP [dm3] X_4899839_SNP [dm6]	G	T	7.525e^-4	0.611	INTRON CG42594
2R	13964571	2R_13964571_SNP [dm3] 2R_18077066_SNP [dm6]	T	C	7.526e^-4	0.611	INTRON CG34386
3R	17634389	3R_17634389_SNP [dm3] 3R_21808667_SNP [dm6]	C	A	7.530e^-4	0.611	UTR_5_PRIME CASK UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14981530	3R_14981530_SNP [dm3] 3R_19155808_SNP [dm6]	A	T	7.531e^-4	0.611	INTRON CG11779	TF binding site mE1_TFBS_sens
2R	16730592	2R_16730592_DEL [dm3] 2R_20843087_DEL [dm6]	TT	T	7.549e^-4	0.611	INTERGENIC
2L	5771606	2L_5771606_SNP [dm3] 2L_5771606_SNP [dm6]	T	G	7.553e^-4	0.611	DOWNSTREAM CR31912 INTRON CG9171	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_zfh1
2R	5302218	2R_5302218_SNP [dm3] 2R_9414713_SNP [dm6]	A	G	7.557e^-4	0.611	UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10009893	2L_10009893_SNP [dm3] 2L_10009893_SNP [dm6]	A	C	7.567e^-4	0.611	UPSTREAM Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18184961	3R_18184961_SNP [dm3] 3R_22359239_SNP [dm6]	T	C	7.573e^-4	0.611	INTRON Sar1
X	17809277	X_17809277_DEL [dm3] X_17915244_DEL [dm6]	TT	T	7.575e^-4	0.611	INTRON CG6847
3R	5760239	3R_5760239_SNP [dm3] 3R_9934517_SNP [dm6]	G	A	7.597e^-4	0.611	INTRON Glut4EF
3L	4510261	3L_4510261_SNP [dm3] 3L_4510261_SNP [dm6]	G	A	7.598e^-4	0.611	DOWNSTREAM Tie INTERGENIC
2L	16013698	2L_16013698_SNP [dm3] 2L_16013698_SNP [dm6]	C	T	7.608e^-4	0.611	INTRON beat-Ic
2L	4443232	2L_4443232_SNP [dm3] 2L_4443232_SNP [dm6]	C	T	7.616e^-4	0.611	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4443670	2L_4443670_SNP [dm3] 2L_4443670_SNP [dm6]	T	G	7.616e^-4	0.611	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4450756	2L_4450756_SNP [dm3] 2L_4450756_SNP [dm6]	C	T	7.616e^-4	0.611	INTRON CG15439	TF binding site mE1_TFBS_cad
2L	4450758	2L_4450758_SNP [dm3] 2L_4450758_SNP [dm6]	C	T	7.616e^-4	0.611	INTRON CG15439	TF binding site mE1_TFBS_cad
3R	10687529	3R_10687529_INS [dm3] 3R_14861807_INS [dm6]	G	GCGTTAGTGTGTG...	7.628e^-4	0.611	INTRON btsz
2L	4420075	2L_4420075_SNP [dm3] 2L_4420075_SNP [dm6]	T	G	7.633e^-4	0.611	INTRON CG15431
3R	12360690	3R_12360690_SNP [dm3] 3R_16534968_SNP [dm6]	A	G	7.634e^-4	0.611	INTRON CG42342
2R	19646873	2R_19646873_SNP [dm3] 2R_23759350_SNP [dm6]	G	A	7.638e^-4	0.611	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10137979	3L_10137979_SNP [dm3] 3L_10144879_SNP [dm6]	G	A	7.640e^-4	0.611	INTERGENIC
X	6856513	X_6856513_SNP [dm3] X_6962480_SNP [dm6]	A	G	7.644e^-4	0.611	SYNONYMOUS_CODING CG14431 INTRON CG32732
3R	9309812	3R_9309812_SNP [dm3] 3R_13484090_SNP [dm6]	C	A	7.650e^-4	0.611	INTERGENIC
2L	1949847	2L_1949847_SNP [dm3] 2L_1949847_SNP [dm6]	T	C	7.659e^-4	0.611	DOWNSTREAM erm INTERGENIC
3L	10043428	3L_10043428_INS [dm3] 3L_10050328_INS [dm6]	T	TG	7.678e^-4	0.611	INTRON dpr6
3L	7415695	3L_7415695_SNP [dm3] 3L_7422595_SNP [dm6]	C	T	7.679e^-4	0.611	INTERGENIC
3R	25775801	3R_25775801_INS [dm3] 3R_29950079_INS [dm6]	G	GTG	7.681e^-4	0.611	DOWNSTREAM TkR99D INTERGENIC
X	4510132	X_4510132_SNP [dm3] X_4616099_SNP [dm6]	T	G	7.701e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	4510459	X_4510459_SNP [dm3] X_4616426_SNP [dm6]	T	C	7.701e^-4	0.611	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6754250	2R_6754250_SNP [dm3] 2R_10866745_SNP [dm6]	A	C	7.708e^-4	0.611	INTRON CG30015
2L	6377684	2L_6377684_SNP [dm3] 2L_6377684_SNP [dm6]	T	C	7.712e^-4	0.611	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6377708	2L_6377708_SNP [dm3] 2L_6377708_SNP [dm6]	C	T	7.712e^-4	0.611	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	651617	X_651617_SNP [dm3] X_757584_SNP [dm6]	T	C	7.725e^-4	0.611	INTRON CG5254
3L	1549643	3L_1549643_SNP [dm3] 3L_1549643_SNP [dm6]	A	G	7.727e^-4	0.611	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7791176	X_7791176_SNP [dm3] X_7897143_SNP [dm6]	T	C	7.757e^-4	0.611	DOWNSTREAM CR11386 & 1 other INTERGENIC
3L	10080332	3L_10080332_SNP [dm3] 3L_10087232_SNP [dm6]	A	G	7.789e^-4	0.611	SYNONYMOUS_CODING CG14160 INTRON dpr6
2R	9971944	2R_9971944_SNP [dm3] 2R_14084439_SNP [dm6]	G	T	7.797e^-4	0.611	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	14975681	3L_14975681_SNP [dm3] 3L_14982581_SNP [dm6]	A	G	7.798e^-4	0.611	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5389251	2L_5389251_SNP [dm3] 2L_5389251_SNP [dm6]	C	T	7.801e^-4	0.611	DOWNSTREAM CR44745 INTERGENIC
3L	3933517	3L_3933517_SNP [dm3] 3L_3933517_SNP [dm6]	A	T	7.812e^-4	0.611	UTR_5_PRIME Eip63F-1 INTRON Eip63F-1
3R	8595468	3R_8595468_SNP [dm3] 3R_12769746_SNP [dm6]	A	T	7.832e^-4	0.611	INTRON beat-Vc
2L	19277190	2L_19277190_SNP [dm3] 2L_19277190_SNP [dm6]	C	T	7.843e^-4	0.611	INTERGENIC
3L	3940665	3L_3940665_INS [dm3] 3L_3940665_INS [dm6]	C	CTT	7.846e^-4	0.611	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	22025761	2L_22025761_SNP [dm3] 2L_22025761_SNP [dm6]	T	A	7.863e^-4	0.611	DOWNSTREAM tio INTERGENIC	TF binding site BDTNP1_TFBS_z
X	14024766	X_14024766_SNP [dm3] X_14130733_SNP [dm6]	A	C	7.870e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2413221	3L_2413221_DEL [dm3] 3L_2413221_DEL [dm6]	CAT	C	7.872e^-4	0.611	UPSTREAM CG45186 INTRON CG45186
2L	8569750	2L_8569750_SNP [dm3] 2L_8569750_SNP [dm6]	G	A	7.884e^-4	0.611	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18887495	3L_18887495_SNP [dm3] 3L_18894395_SNP [dm6]	C	G	7.891e^-4	0.611	SYNONYMOUS_CODING CG3902	TF binding site mE1_TFBS_cad
2R	7605870	2R_7605870_SNP [dm3] 2R_11718365_SNP [dm6]	T	C	7.897e^-4	0.611	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4200831	3L_4200831_SNP [dm3] 3L_4200831_SNP [dm6]	G	C	7.901e^-4	0.611	UTR_3_PRIME CG15005 INTRON CG43367
3L	4200834	3L_4200834_SNP [dm3] 3L_4200834_SNP [dm6]	A	C	7.901e^-4	0.611	UTR_3_PRIME CG15005 INTRON CG43367
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	7.901e^-4	0.611	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18375084	3R_18375084_SNP [dm3] 3R_22549362_SNP [dm6]	G	A	7.906e^-4	0.611	DOWNSTREAM CR44062 INTERGENIC
3L	5125631	3L_5125631_DEL [dm3] 3L_5132531_DEL [dm6]	CATATTGAG	C	7.912e^-4	0.611	DOWNSTREAM CG15213 & 1 other INTERGENIC
X	5903884	X_5903884_SNP [dm3] X_6009851_SNP [dm6]	C	T	7.916e^-4	0.611	INTRON mab-21
2R	18188855	2R_18188855_SNP [dm3] 2R_22301350_SNP [dm6]	T	G	7.920e^-4	0.611	INTRON wdp
3L	12199223	3L_12199223_SNP [dm3] 3L_12206123_SNP [dm6]	T	G	7.928e^-4	0.611	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14211183	2R_14211183_SNP [dm3] 2R_18323678_SNP [dm6]	T	A	7.952e^-4	0.611	INTRON sbb	TF binding site BDTNP1_TFBS_twi
2R	10480655	2R_10480655_SNP [dm3] 2R_14593150_SNP [dm6]	G	A	7.957e^-4	0.611	INTRON CG12869	TF binding site mE1_TFBS_cad
2R	10480704	2R_10480704_SNP [dm3] 2R_14593199_SNP [dm6]	T	A	7.957e^-4	0.611	INTRON CG12869	TF binding site mE1_TFBS_cad
2R	14297873	2R_14297873_SNP [dm3] 2R_18410368_SNP [dm6]	C	G	7.974e^-4	0.611	DOWNSTREAM GstE9 INTRON imd
X	6451064	X_6451064_SNP [dm3] X_6557031_SNP [dm6]	G	T	7.981e^-4	0.611	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	11120668	3R_11120668_SNP [dm3] 3R_15294946_SNP [dm6]	T	C	7.982e^-4	0.611	INTRON Tm1
3R	21836807	3R_21836807_SNP [dm3] 3R_26011085_SNP [dm6]	A	C	8.004e^-4	0.611	SYNONYMOUS_CODING E_spl_malpha-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6898995	3R_6898995_SNP [dm3] 3R_11073273_SNP [dm6]	A	G	8.027e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13645284	2R_13645284_SNP [dm3] 2R_17757779_SNP [dm6]	A	C	8.034e^-4	0.611	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5732077	2L_5732077_SNP [dm3] 2L_5732077_SNP [dm6]	C	A	8.044e^-4	0.611	INTRON CG11030	TF binding site mE1_TFBS_HSA
2R	18201893	2R_18201893_SNP [dm3] 2R_22314388_SNP [dm6]	T	C	8.047e^-4	0.611	INTRON CR44758
3L	3940049	3L_3940049_SNP [dm3] 3L_3940049_SNP [dm6]	G	A	8.048e^-4	0.611	SYNONYMOUS_CODING CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
3R	26041331	3R_26041331_SNP [dm3] 3R_30215609_SNP [dm6]	G	A	8.052e^-4	0.611	UPSTREAM CecC INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1158702	X_1158702_DEL [dm3] X_1264669_DEL [dm6]	TCGT	T	8.059e^-4	0.611	INTRON Atf3
2L	4057043	2L_4057043_SNP [dm3] 2L_4057043_SNP [dm6]	T	G	8.061e^-4	0.611	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18986940	2R_18986940_DEL [dm3] 2R_23099417_DEL [dm6]	TAC	T	8.067e^-4	0.611	DOWNSTREAM RpL37b INTERGENIC
2R	18986950	2R_18986950_SNP [dm3] 2R_23099427_SNP [dm6]	T	G	8.067e^-4	0.611	DOWNSTREAM RpL37b INTERGENIC
2R	18986952	2R_18986952_DEL [dm3] 2R_23099429_DEL [dm6]	TCATTGG	T	8.067e^-4	0.611	DOWNSTREAM RpL37b INTERGENIC
3R	26740928	3R_26740928_SNP [dm3] 3R_30915206_SNP [dm6]	T	A	8.093e^-4	0.611	INTRON Ptx1	TF binding site mE1_TFBS_cad
3L	20697314	3L_20697314_SNP [dm3] 3L_20704214_SNP [dm6]	A	T	8.104e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	7959191	X_7959191_SNP [dm3] X_8065158_SNP [dm6]	T	C	8.116e^-4	0.611	INTRON mys
X	16359482	X_16359482_SNP [dm3] X_16465449_SNP [dm6]	A	G	8.126e^-4	0.611	INTRON para
X	15474949	X_15474949_SNP [dm3] X_15580916_SNP [dm6]	C	G	8.137e^-4	0.611	DOWNSTREAM CG9215 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	446356	3L_446356_SNP [dm3] 3L_446356_SNP [dm6]	T	A	8.149e^-4	0.611	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
X	14527954	X_14527954_SNP [dm3] X_14633921_SNP [dm6]	G	A	8.149e^-4	0.611	INTRON NetA	TF binding site mE1_TFBS_HSA
2L	14397360	2L_14397360_SNP [dm3] 2L_14397360_SNP [dm6]	C	T	8.166e^-4	0.611	INTRON elB
3R	11072463	3R_11072463_SNP [dm3] 3R_15246741_SNP [dm6]	A	G	8.183e^-4	0.611	DOWNSTREAM CG6499 & 1 other INTERGENIC
3L	4695949	3L_4695949_SNP [dm3] 3L_4695949_SNP [dm6]	T	G	8.195e^-4	0.611	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12071404	3R_12071404_SNP [dm3] 3R_16245682_SNP [dm6]	A	C	8.210e^-4	0.611	INTRON tara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3446334	3L_3446334_SNP [dm3] 3L_3446334_SNP [dm6]	G	A	8.214e^-4	0.611	INTRON eIF5B
3L	5846554	3L_5846554_SNP [dm3] 3L_5853454_SNP [dm6]	C	T	8.214e^-4	0.611	INTERGENIC
2L	12625245	2L_12625245_SNP [dm3] 2L_12625245_SNP [dm6]	A	C	8.219e^-4	0.611	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
3R	8491614	3R_8491614_SNP [dm3] 3R_12665892_SNP [dm6]	A	C	8.224e^-4	0.611	UPSTREAM CG14395 INTRON CG14395
3R	20260975	3R_20260975_DEL [dm3] 3R_24435253_DEL [dm6]	AAAGTATGCGA...	A	8.228e^-4	0.611	INTRON nAChRalpha1
3L	7769114	3L_7769114_SNP [dm3] 3L_7776014_SNP [dm6]	G	C	8.229e^-4	0.611	UPSTREAM Clk INTERGENIC	regulatory region REDfly_CRMs
2L	12619137	2L_12619137_SNP [dm3] 2L_12619137_SNP [dm6]	T	C	8.239e^-4	0.611	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	12569991	3L_12569991_SNP [dm3] 3L_12576891_SNP [dm6]	G	T	8.250e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19110144	X_19110144_SNP [dm3] X_19216111_SNP [dm6]	C	T	8.251e^-4	0.611	SYNONYMOUS_CODING Muc18B	TF binding site BDTNP1_TFBS_da
3L	9398836	3L_9398836_SNP [dm3] 3L_9405736_SNP [dm6]	G	A	8.254e^-4	0.611	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
2R	14291615	2R_14291615_SNP [dm3] 2R_18404110_SNP [dm6]	G	T	8.261e^-4	0.611	UPSTREAM GstE5 DOWNSTREAM GstE4 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	14405605	2L_14405605_SNP [dm3] 2L_14405605_SNP [dm6]	T	C	8.269e^-4	0.611	INTRON elB	TF binding site mE1_TFBS_cad
3L	3119504	3L_3119504_SNP [dm3] 3L_3119504_SNP [dm6]	A	T	8.278e^-4	0.611	SYNONYMOUS_CODING prominin-like
2R	9965059	2R_9965059_SNP [dm3] 2R_14077554_SNP [dm6]	T	C	8.279e^-4	0.611	INTRON Prosap
2L	5389210	2L_5389210_SNP [dm3] 2L_5389210_SNP [dm6]	G	A	8.289e^-4	0.611	DOWNSTREAM CR44745 INTERGENIC
X	14661113	X_14661113_SNP [dm3] X_14767080_SNP [dm6]	A	G	8.289e^-4	0.611	INTERGENIC
3L	8322971	3L_8322971_SNP [dm3] 3L_8329871_SNP [dm6]	C	A	8.291e^-4	0.611	NON_SYNONYMOUS_CODING CG34462
3R	5191856	3R_5191856_SNP [dm3] 3R_9366134_SNP [dm6]	T	A	8.300e^-4	0.611	UPSTREAM CG8129 INTRON CG8129
2L	17727660	2L_17727660_SNP [dm3] 2L_17727660_SNP [dm6]	T	C	8.306e^-4	0.611	INTRON CadN
2L	15280376	2L_15280376_INS [dm3] 2L_15280376_INS [dm6]	A	AT	8.306e^-4	0.611	DOWNSTREAM CR43682 EXON CR45349
X	7791114	X_7791114_SNP [dm3] X_7897081_SNP [dm6]	T	A	8.318e^-4	0.611	DOWNSTREAM CR11386 & 1 other INTERGENIC
2R	4739669	2R_4739669_SNP [dm3] 2R_8852164_SNP [dm6]	T	C	8.321e^-4	0.611	SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo
3R	17863796	3R_17863796_SNP [dm3] 3R_22038074_SNP [dm6]	T	C	8.339e^-4	0.611	SYNONYMOUS_CODING pit
2L	1089088	2L_1089088_INS [dm3] 2L_1089088_INS [dm6]	G	GCG	8.370e^-4	0.611	INTRON CG4629
2R	14323128	2R_14323128_SNP [dm3] 2R_18435623_SNP [dm6]	G	C	8.372e^-4	0.611	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6307756	2R_6307756_SNP [dm3] 2R_10420251_SNP [dm6]	T	A	8.400e^-4	0.611	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10901909	3R_10901909_INS [dm3] 3R_15076187_INS [dm6]	G	GAAT	8.442e^-4	0.611	UTR_5_PRIME dpr9
3R	17634064	3R_17634064_SNP [dm3] 3R_21808342_SNP [dm6]	T	G	8.446e^-4	0.611	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8555043	2R_8555043_SNP [dm3] 2R_12667538_SNP [dm6]	C	A	8.448e^-4	0.611	INTRON nemy
3R	15514292	3R_15514292_SNP [dm3] 3R_19688570_SNP [dm6]	A	T	8.457e^-4	0.611	INTRON Naam	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6537557	3L_6537557_SNP [dm3] 3L_6544457_SNP [dm6]	T	C	8.464e^-4	0.611	INTRON sfl
3R	14807954	3R_14807954_SNP [dm3] 3R_18982232_SNP [dm6]	A	G	8.464e^-4	0.611	SYNONYMOUS_CODING dnk UPSTREAM Smu1 DOWNSTREAM snRNP-U1-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	8.464e^-4	0.611	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17690158	3L_17690158_SNP [dm3] 3L_17697058_SNP [dm6]	C	T	8.473e^-4	0.611	INTRON Ccn
3R	26638368	3R_26638368_SNP [dm3] 3R_30812646_SNP [dm6]	T	A	8.482e^-4	0.611	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12177248	2R_12177248_SNP [dm3] 2R_16289743_SNP [dm6]	T	C	8.487e^-4	0.611	SPLICE_SITE_REGION CR43730 UPSTREAM CG30099 INTRON CR43730 & 1 other
2L	19689885	2L_19689885_SNP [dm3] 2L_19689885_SNP [dm6]	T	C	8.500e^-4	0.611	INTRON Lar
2R	11163598	2R_11163598_SNP [dm3] 2R_15276093_SNP [dm6]	C	A	8.509e^-4	0.611	INTRON Trpm
2R	16337786	2R_16337786_SNP [dm3] 2R_20450281_SNP [dm6]	A	G	8.517e^-4	0.611	INTRON CG12484
X	9664412	X_9664412_SNP [dm3] X_9770379_SNP [dm6]	A	G	8.550e^-4	0.611	INTERGENIC
3L	8959616	3L_8959616_SNP [dm3] 3L_8966516_SNP [dm6]	C	G	8.562e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959625	3L_8959625_SNP [dm3] 3L_8966525_SNP [dm6]	C	A	8.562e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959673	3L_8959673_SNP [dm3] 3L_8966573_SNP [dm6]	A	G	8.562e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959712	3L_8959712_SNP [dm3] 3L_8966612_SNP [dm6]	A	C	8.562e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959782	3L_8959782_SNP [dm3] 3L_8966682_SNP [dm6]	C	A	8.562e^-4	0.611	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1721518	3L_1721518_SNP [dm3] 3L_1721518_SNP [dm6]	A	G	8.564e^-4	0.611	NON_SYNONYMOUS_CODING CG18171 INTRON drpr	TF binding site mE1_TFBS_sens
3L	8703488	3L_8703488_SNP [dm3] 3L_8710388_SNP [dm6]	A	G	8.567e^-4	0.611	INTERGENIC	regulatory region REDfly_CRMs
2L	8715372	2L_8715372_SNP [dm3] 2L_8715372_SNP [dm6]	T	C	8.570e^-4	0.611	UPSTREAM raw INTRON raw
X	8658801	X_8658801_DEL [dm3] X_8764768_DEL [dm6]	AAAA	A	8.585e^-4	0.611	INTRON Lim1
3R	11788920	3R_11788920_SNP [dm3] 3R_15963198_SNP [dm6]	C	T	8.599e^-4	0.611	SYNONYMOUS_CODING CG4287 UPSTREAM CG5516	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6021868	2R_6021868_SNP [dm3] 2R_10134363_SNP [dm6]	T	A	8.660e^-4	0.611	UPSTREAM gem INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5731935	2L_5731935_SNP [dm3] 2L_5731935_SNP [dm6]	A	G	8.660e^-4	0.611	INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	4510517	3L_4510517_SNP [dm3] 3L_4510517_SNP [dm6]	A	T	8.663e^-4	0.611	DOWNSTREAM Tie INTERGENIC
2R	17118909	2R_17118909_SNP [dm3] 2R_21231404_SNP [dm6]	T	C	8.670e^-4	0.611	INTRON ASPP
3L	2462011	3L_2462011_SNP [dm3] 3L_2462011_SNP [dm6]	T	C	8.684e^-4	0.611	UPSTREAM CG45186 INTRON CG45186
3R	18872681	3R_18872681_SNP [dm3] 3R_23046959_SNP [dm6]	G	C	8.686e^-4	0.611	INTRON CG17121
2R	19395426	2R_19395426_SNP [dm3] 2R_23507903_SNP [dm6]	C	T	8.698e^-4	0.611	UPSTREAM CR43794 INTERGENIC
2R	19230604	2R_19230604_SNP [dm3] 2R_23343081_SNP [dm6]	T	C	8.701e^-4	0.611	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5731922	2L_5731922_SNP [dm3] 2L_5731922_SNP [dm6]	A	T	8.703e^-4	0.611	INTRON CG11030	TF binding site mE1_TFBS_HSA
X	14192679	X_14192679_SNP [dm3] X_14298646_SNP [dm6]	C	T	8.711e^-4	0.611	INTERGENIC
2L	3822634	2L_3822634_SNP [dm3] 2L_3822634_SNP [dm6]	A	T	8.721e^-4	0.611	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	9912491	X_9912491_SNP [dm3] X_10018458_SNP [dm6]	G	C	8.740e^-4	0.611	INTRON Cht6
2L	8254411	2L_8254411_SNP [dm3] 2L_8254411_SNP [dm6]	T	C	8.741e^-4	0.611	INTRON CG8086	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10843340	X_10843340_INS [dm3] X_10949307_INS [dm6]	G	GG	8.747e^-4	0.611	DOWNSTREAM Rab9Fa INTRON Myo10A
3R	2372303	3R_2372303_SNP [dm3] 3R_6546581_SNP [dm6]	G	A	8.781e^-4	0.611	INTRON dpr11
3L	8808283	3L_8808283_SNP [dm3] 3L_8815183_SNP [dm6]	C	T	8.792e^-4	0.611	INTERGENIC
2R	19139925	2R_19139925_SNP [dm3] 2R_23252402_SNP [dm6]	T	A	8.795e^-4	0.611	INTERGENIC
2L	19051792	2L_19051792_SNP [dm3] 2L_19051792_SNP [dm6]	A	C	8.829e^-4	0.611	UTR_5_PRIME Rpn3 UPSTREAM Rpn3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3R	24036416	3R_24036416_SNP [dm3] 3R_28210694_SNP [dm6]	T	C	8.829e^-4	0.611	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24036479	3R_24036479_SNP [dm3] 3R_28210757_SNP [dm6]	T	G	8.829e^-4	0.611	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24036485	3R_24036485_SNP [dm3] 3R_28210763_SNP [dm6]	G	A	8.829e^-4	0.611	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6681740	3L_6681740_SNP [dm3] 3L_6688640_SNP [dm6]	G	A	8.840e^-4	0.611	DOWNSTREAM SP1173 INTERGENIC
3L	5080411	3L_5080411_SNP [dm3] 3L_5080411_SNP [dm6]	T	A	8.845e^-4	0.611	INTERGENIC
3L	14049137	3L_14049137_SNP [dm3] 3L_14056037_SNP [dm6]	G	C	8.849e^-4	0.611	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9865214	2R_9865214_SNP [dm3] 2R_13977709_SNP [dm6]	T	A	8.854e^-4	0.611	SYNONYMOUS_CODING CG6701	TF binding site BDTNP1_TFBS_twi
2R	4469399	2R_4469399_SNP [dm3] 2R_8581894_SNP [dm6]	T	C	8.859e^-4	0.611	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14900216	2R_14900216_INS [dm3] 2R_19012711_INS [dm6]	T	TGT	8.865e^-4	0.611	INTERGENIC
2R	9644427	2R_9644427_SNP [dm3] 2R_13756922_SNP [dm6]	T	A	8.884e^-4	0.611	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19284500	2L_19284500_SNP [dm3] 2L_19284500_SNP [dm6]	C	A	8.890e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19284503	2L_19284503_SNP [dm3] 2L_19284503_SNP [dm6]	T	A	8.890e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
X	12100232	X_12100232_SNP [dm3] X_12206199_SNP [dm6]	T	G	8.891e^-4	0.611	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	10314473	3R_10314473_SNP [dm3] 3R_14488751_SNP [dm6]	C	T	8.899e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	8.900e^-4	0.611	INTRON CG4238
3L	9597360	3L_9597360_SNP [dm3] 3L_9604260_SNP [dm6]	C	A	8.901e^-4	0.611	INTRON CG3280
3R	10839381	3R_10839381_SNP [dm3] 3R_15013659_SNP [dm6]	C	T	8.910e^-4	0.611	INTERGENIC
2L	21999661	2L_21999661_SNP [dm3] 2L_21999661_SNP [dm6]	G	A	8.915e^-4	0.611	DOWNSTREAM CR44916 INTERGENIC
3R	11476285	3R_11476285_SNP [dm3] 3R_15650563_SNP [dm6]	A	G	8.929e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5892607	3R_5892607_SNP [dm3] 3R_10066885_SNP [dm6]	C	T	8.931e^-4	0.611	NON_SYNONYMOUS_CODING CG33783
3R	5892809	3R_5892809_SNP [dm3] 3R_10067087_SNP [dm6]	A	G	8.931e^-4	0.611	UPSTREAM CG33784 INTRON CG33783
2R	3799834	2R_3799834_SNP [dm3] 2R_7912329_SNP [dm6]	G	T	8.932e^-4	0.611	INTRON CG30377
2R	3799870	2R_3799870_SNP [dm3] 2R_7912365_SNP [dm6]	C	A	8.932e^-4	0.611	INTRON CG30377
3R	14902650	3R_14902650_SNP [dm3] 3R_19076928_SNP [dm6]	A	C	8.958e^-4	0.611	INTRON cdi
3R	9456879	3R_9456879_SNP [dm3] 3R_13631157_SNP [dm6]	G	C	8.959e^-4	0.611	UPSTREAM CG10841 EXON CR45594	TF binding site BDTNP1_TFBS_sna
3L	22607675	3L_22607675_SNP [dm3] 3L_22614575_SNP [dm6]	G	A	8.970e^-4	0.611	INTRON CG14459
3R	9312448	3R_9312448_SNP [dm3] 3R_13486726_SNP [dm6]	A	C	8.988e^-4	0.611	INTERGENIC
3R	16547911	3R_16547911_SNP [dm3] 3R_20722189_SNP [dm6]	T	C	8.990e^-4	0.611	INTERGENIC
2R	10032829	2R_10032829_SNP [dm3] 2R_14145324_SNP [dm6]	T	C	9.006e^-4	0.611	DOWNSTREAM mir-989 INTERGENIC
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	9.013e^-4	0.611	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	3921932	X_3921932_SNP [dm3] X_4027899_SNP [dm6]	G	T	9.047e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17093090	2L_17093090_SNP [dm3] 2L_17093090_SNP [dm6]	G	A	9.048e^-4	0.611	INTERGENIC
3L	10486757	3L_10486757_SNP [dm3] 3L_10493657_SNP [dm6]	A	C	9.058e^-4	0.611	DOWNSTREAM S-Lap4 INTRON A2bp1
X	1982286	X_1982286_SNP [dm3] X_2088253_SNP [dm6]	C	T	9.065e^-4	0.611	INTRON Unc-76
2R	6556450	2R_6556450_SNP [dm3] 2R_10668945_SNP [dm6]	C	A	9.072e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16711218	3R_16711218_SNP [dm3] 3R_20885496_SNP [dm6]	T	C	9.080e^-4	0.611	INTERGENIC
3L	11550919	3L_11550919_SNP [dm3] 3L_11557819_SNP [dm6]	A	C	9.092e^-4	0.611	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Climbing_Index_CTRL phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results