DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.827e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0219

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.4914	0.0642
In_3R_P	7.3994	0.0247

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2364 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	1.923e^-8	0.029	INTERGENIC
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	4.522e^-8	0.029	INTERGENIC
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	4.679e^-8	0.029	INTERGENIC
2R	10152761	2R_10152761_SNP [dm3] 2R_14265256_SNP [dm6]	A	T	1.758e^-7	0.082	INTRON CG8547
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	2.602e^-7	0.092	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10151361	2R_10151361_SNP [dm3] 2R_14263856_SNP [dm6]	A	C	3.627e^-7	0.092	SPLICE_SITE_REGION CG8547 INTRON CG8547	TF binding site mE1_TFBS_cad
2R	10151451	2R_10151451_SNP [dm3] 2R_14263946_SNP [dm6]	A	G	3.702e^-7	0.092	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	4.048e^-7	0.092	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18147174	3L_18147174_SNP [dm3] 3L_18154074_SNP [dm6]	C	T	4.393e^-7	0.092	DOWNSTREAM CG7330 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10151358	2R_10151358_SNP [dm3] 2R_14263853_SNP [dm6]	T	C	5.036e^-7	0.094	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	5.532e^-7	0.094	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	7.665e^-7	0.107	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	8.237e^-7	0.107	INTERGENIC
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	8.870e^-7	0.107	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	8.870e^-7	0.107	UPSTREAM CG10205 INTERGENIC
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	9.446e^-7	0.107	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	9.738e^-7	0.107	INTERGENIC
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	1.033e^-6	0.108	DOWNSTREAM CG10205 INTERGENIC
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	1.120e^-6	0.109	INTERGENIC	regulatory region REDfly_CRMs
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	1.166e^-6	0.109	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	1305304	2L_1305304_SNP [dm3] 2L_1305304_SNP [dm6]	G	A	1.388e^-6	0.122	INTERGENIC
2R	10151359	2R_10151359_SNP [dm3] 2R_14263854_SNP [dm6]	G	T	1.448e^-6	0.122	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	12972020	2R_12972020_SNP [dm3] 2R_17084515_SNP [dm6]	G	T	1.502e^-6	0.122	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	1.593e^-6	0.125	INTERGENIC
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.986e^-6	0.133	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	1.997e^-6	0.133	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	562444	2L_562444_SNP [dm3] 2L_562444_SNP [dm6]	C	A	2.011e^-6	0.133	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	2.036e^-6	0.133	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7474501	2R_7474501_SNP [dm3] 2R_11586996_SNP [dm6]	G	A	2.050e^-6	0.133	SYNONYMOUS_CODING tou
2R	10787494	2R_10787494_SNP [dm3] 2R_14899989_SNP [dm6]	C	T	2.173e^-6	0.133	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	562738	2L_562738_SNP [dm3] 2L_562738_SNP [dm6]	A	G	2.192e^-6	0.133	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	2.463e^-6	0.144	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	562744	2L_562744_SNP [dm3] 2L_562744_SNP [dm6]	A	C	2.783e^-6	0.155	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	10153923	2R_10153923_INS [dm3] 2R_14266418_INS [dm6]	A	AATCG	2.801e^-6	0.155	INTRON CG8547
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	2.918e^-6	0.156	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	17268226	2R_17268226_SNP [dm3] 2R_21380721_SNP [dm6]	G	T	3.051e^-6	0.159	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10151270	2R_10151270_SNP [dm3] 2R_14263765_SNP [dm6]	C	T	3.289e^-6	0.166	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	3.365e^-6	0.166	INTERGENIC
2L	562762	2L_562762_SNP [dm3] 2L_562762_SNP [dm6]	G	A	3.552e^-6	0.169	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	562662	2L_562662_SNP [dm3] 2L_562662_SNP [dm6]	T	C	3.600e^-6	0.169	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	3338964	2L_3338964_SNP [dm3] 2L_3338964_SNP [dm6]	T	C	3.777e^-6	0.171	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	3.834e^-6	0.171	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	4576819	2L_4576819_SNP [dm3] 2L_4576819_SNP [dm6]	A	G	4.335e^-6	0.189	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	4.660e^-6	0.199	INTERGENIC
2L	18912293	2L_18912293_SNP [dm3] 2L_18912293_SNP [dm6]	C	T	5.223e^-6	0.213	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10153715	2R_10153715_SNP [dm3] 2R_14266210_SNP [dm6]	A	T	5.227e^-6	0.213	INTRON CG8547
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	5.568e^-6	0.222	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
3R	14869673	3R_14869673_SNP [dm3] 3R_19043951_SNP [dm6]	G	T	5.867e^-6	0.225	NON_SYNONYMOUS_CODING CG6026 DOWNSTREAM cdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	5.880e^-6	0.225	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
2R	17712723	2R_17712723_SNP [dm3] 2R_21825218_SNP [dm6]	C	T	6.488e^-6	0.243	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10787579	2R_10787579_SNP [dm3] 2R_14900074_SNP [dm6]	T	C	6.716e^-6	0.247	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2991541	3L_2991541_SNP [dm3] 3L_2991541_SNP [dm6]	T	A	6.989e^-6	0.251	INTERGENIC
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	7.100e^-6	0.251	SYNONYMOUS_CODING LamC INTRON ttv
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	7.479e^-6	0.26	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17923288	2L_17923288_SNP [dm3] 2L_17923288_SNP [dm6]	T	A	7.853e^-6	0.268	INTERGENIC
2L	18731011	2L_18731011_INS [dm3] 2L_18731011_INS [dm6]	G	GTTG	8.200e^-6	0.275	UTR_5_PRIME CG10348
X	14228810	X_14228810_SNP [dm3] X_14334777_SNP [dm6]	G	C	9.446e^-6	0.311	INTRON dpr8
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.012e^-5	0.314	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	1.065e^-5	0.314	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	20561362	2L_20561362_SNP [dm3] 2L_20561362_SNP [dm6]	G	T	1.067e^-5	0.314	UPSTREAM CR45347 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20599455	2L_20599455_SNP [dm3] 2L_20599455_SNP [dm6]	G	A	1.078e^-5	0.314	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	1.086e^-5	0.314	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	1.086e^-5	0.314	INTRON kn	TF binding site BDTNP1_TFBS_da
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	1.116e^-5	0.314	INTERGENIC
3L	12242272	3L_12242272_SNP [dm3] 3L_12249172_SNP [dm6]	T	A	1.134e^-5	0.314	INTRON app	TF binding site mE1_TFBS_cad
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	1.144e^-5	0.314	INTRON ttv
2R	15159014	2R_15159014_SNP [dm3] 2R_19271509_SNP [dm6]	G	T	1.148e^-5	0.314	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	1.152e^-5	0.314	INTRON CG8547
2L	20226409	2L_20226409_SNP [dm3] 2L_20226409_SNP [dm6]	G	C	1.161e^-5	0.314	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	1.171e^-5	0.314	INTRON CG8547
2R	10151413	2R_10151413_SNP [dm3] 2R_14263908_SNP [dm6]	C	T	1.192e^-5	0.314	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
2R	12693123	2R_12693123_SNP [dm3] 2R_16805618_SNP [dm6]	T	A	1.206e^-5	0.314	INTERGENIC
2R	10516851	2R_10516851_SNP [dm3] 2R_14629346_SNP [dm6]	T	C	1.285e^-5	0.33	UPSTREAM CG10131 INTERGENIC
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	1.320e^-5	0.33	INTRON kn
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	1.320e^-5	0.33	DOWNSTREAM tou INTERGENIC
2R	10517407	2R_10517407_SNP [dm3] 2R_14629902_SNP [dm6]	T	C	1.337e^-5	0.33	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
3R	3405376	3R_3405376_SNP [dm3] 3R_7579654_SNP [dm6]	T	G	1.367e^-5	0.333	INTRON CG34127
2R	17183061	2R_17183061_SNP [dm3] 2R_21295556_SNP [dm6]	G	A	1.426e^-5	0.337	UTR_5_PRIME CG9752 UPSTREAM CG42672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10186537	2R_10186537_SNP [dm3] 2R_14299032_SNP [dm6]	C	A	1.431e^-5	0.337	UTR_3_PRIME Ih DOWNSTREAM Ih
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	1.450e^-5	0.337	INTRON CG8547
2R	11741984	2R_11741984_SNP [dm3] 2R_15854479_SNP [dm6]	T	A	1.456e^-5	0.337	UTR_3_PRIME tun DOWNSTREAM tun
2R	15159096	2R_15159096_SNP [dm3] 2R_19271591_SNP [dm6]	G	C	1.503e^-5	0.344	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	21153405	3L_21153405_SNP [dm3] 3L_21160305_SNP [dm6]	C	T	1.542e^-5	0.346	INTRON Ac78C
2R	9647502	2R_9647502_SNP [dm3] 2R_13759997_SNP [dm6]	C	T	1.566e^-5	0.346	INTERGENIC
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	1.598e^-5	0.346	INTERGENIC
2L	6296972	2L_6296972_SNP [dm3] 2L_6296972_SNP [dm6]	G	A	1.603e^-5	0.346	INTRON Ddr
3R	26762888	3R_26762888_SNP [dm3] 3R_30937166_SNP [dm6]	A	C	1.603e^-5	0.346	UPSTREAM CG15549 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15159019	2R_15159019_SNP [dm3] 2R_19271514_SNP [dm6]	A	T	1.634e^-5	0.348	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	714027	2L_714027_SNP [dm3] 2L_714027_SNP [dm6]	A	G	1.655e^-5	0.349	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13075547	2R_13075547_SNP [dm3] 2R_17188042_SNP [dm6]	C	A	1.673e^-5	0.349	UPSTREAM CR44388 DOWNSTREAM CR44389 INTERGENIC
2L	17060671	2L_17060671_SNP [dm3] 2L_17060671_SNP [dm6]	G	A	1.731e^-5	0.356	INTERGENIC
2L	17924068	2L_17924068_SNP [dm3] 2L_17924068_SNP [dm6]	A	C	1.746e^-5	0.356	INTERGENIC
2R	7315395	2R_7315395_SNP [dm3] 2R_11427890_SNP [dm6]	A	G	1.780e^-5	0.359	UPSTREAM Drip INTRON Drip
X	17176368	X_17176368_SNP [dm3] X_17282335_SNP [dm6]	T	C	1.830e^-5	0.365	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	1.930e^-5	0.379	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11617001	3L_11617001_SNP [dm3] 3L_11623901_SNP [dm6]	C	A	1.938e^-5	0.379	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	3272656	2L_3272656_INS [dm3] 2L_3272656_INS [dm6]	T	TTATCTTATTACCGCGT...	1.978e^-5	0.383	DOWNSTREAM CG3347 INTERGENIC
2R	7315344	2R_7315344_SNP [dm3] 2R_11427839_SNP [dm6]	G	T	2.022e^-5	0.386	UPSTREAM Drip INTRON Drip
2R	17254946	2R_17254946_SNP [dm3] 2R_21367441_SNP [dm6]	G	A	2.053e^-5	0.386	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17185532	2R_17185532_SNP [dm3] 2R_21298027_SNP [dm6]	A	T	2.056e^-5	0.386	UTR_5_PRIME CG42672 INTRON CG42672 EXON CR44724
X	9471620	X_9471620_SNP [dm3] X_9577587_SNP [dm6]	G	T	2.085e^-5	0.387	INTRON CG32699
3L	14626361	3L_14626361_SNP [dm3] 3L_14633261_SNP [dm6]	G	A	2.137e^-5	0.393	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	26762961	3R_26762961_SNP [dm3] 3R_30937239_SNP [dm6]	T	G	2.167e^-5	0.394	UPSTREAM CG15549 & 1 other INTERGENIC
3L	11616969	3L_11616969_SNP [dm3] 3L_11623869_SNP [dm6]	T	A	2.182e^-5	0.394	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	19920060	2L_19920060_SNP [dm3] 2L_19920060_SNP [dm6]	A	G	2.207e^-5	0.394	INTRON sick EXON CR43828
3R	3405267	3R_3405267_SNP [dm3] 3R_7579545_SNP [dm6]	G	A	2.245e^-5	0.397	INTRON CG34127
3L	596732	3L_596732_SNP [dm3] 3L_596732_SNP [dm6]	G	T	2.272e^-5	0.398	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17268087	2R_17268087_SNP [dm3] 2R_21380582_SNP [dm6]	A	C	2.307e^-5	0.401	INTERGENIC
3L	11751835	3L_11751835_INS [dm3] 3L_11758735_INS [dm6]	T	TTT	2.337e^-5	0.402	INTRON CG6024
2R	10540199	2R_10540199_SNP [dm3] 2R_14652694_SNP [dm6]	T	C	2.400e^-5	0.409	INTERGENIC
2R	11909492	2R_11909492_SNP [dm3] 2R_16021987_SNP [dm6]	A	C	2.433e^-5	0.409	SYNONYMOUS_CODING CG8399
3L	11643988	3L_11643988_SNP [dm3] 3L_11650888_SNP [dm6]	T	A	2.444e^-5	0.409	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
2R	10787296	2R_10787296_SNP [dm3] 2R_14899791_SNP [dm6]	A	G	2.524e^-5	0.414	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	2.529e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15158993	2R_15158993_DEL [dm3] 2R_19271488_DEL [dm6]	CA	T	2.538e^-5	0.414	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	13911333	X_13911333_SNP [dm3] X_14017300_SNP [dm6]	T	A	2.581e^-5	0.416	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
2L	6593875	2L_6593875_SNP [dm3] 2L_6593875_SNP [dm6]	A	T	2.595e^-5	0.416	INTRON CG11319
2R	4108441	2R_4108441_SNP [dm3] 2R_8220936_SNP [dm6]	G	A	2.675e^-5	0.425	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15830351	2R_15830351_INS [dm3] 2R_19942846_INS [dm6]	T	TT	2.751e^-5	0.425	INTERGENIC
3L	11617089	3L_11617089_SNP [dm3] 3L_11623989_SNP [dm6]	T	A	2.755e^-5	0.425	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	10786143	2R_10786143_SNP [dm3] 2R_14898638_SNP [dm6]	T	A	2.773e^-5	0.425	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13657166	2R_13657166_SNP [dm3] 2R_17769661_SNP [dm6]	G	C	2.780e^-5	0.425	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	20096422	2R_20096422_SNP [dm3] 2R_24208899_SNP [dm6]	C	T	2.791e^-5	0.425	UPSTREAM CG11406 INTERGENIC
2R	10534606	2R_10534606_SNP [dm3] 2R_14647101_SNP [dm6]	G	A	2.808e^-5	0.425	DOWNSTREAM CG10139 INTERGENIC
2R	4108435	2R_4108435_SNP [dm3] 2R_8220930_SNP [dm6]	G	C	2.913e^-5	0.436	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11616939	3L_11616939_SNP [dm3] 3L_11623839_SNP [dm6]	T	C	2.961e^-5	0.436	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
X	4449067	X_4449067_SNP [dm3] X_4555034_SNP [dm6]	G	C	2.974e^-5	0.436	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10666546	2R_10666546_SNP [dm3] 2R_14779041_SNP [dm6]	T	C	2.994e^-5	0.436	INTRON kn
3L	12502549	3L_12502549_SNP [dm3] 3L_12509449_SNP [dm6]	C	T	2.996e^-5	0.436	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
2L	19906799	2L_19906799_SNP [dm3] 2L_19906799_SNP [dm6]	A	G	3.038e^-5	0.437	INTRON sick
2L	4367595	2L_4367595_SNP [dm3] 2L_4367595_SNP [dm6]	G	A	3.054e^-5	0.437	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	3.181e^-5	0.449	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4231695	2L_4231695_SNP [dm3] 2L_4231695_SNP [dm6]	C	T	3.190e^-5	0.449	INTERGENIC
2L	4781448	2L_4781448_SNP [dm3] 2L_4781448_SNP [dm6]	C	T	3.243e^-5	0.449	INTRON CG15630
2R	10787362	2R_10787362_SNP [dm3] 2R_14899857_SNP [dm6]	T	C	3.311e^-5	0.449	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17182141	2R_17182141_SNP [dm3] 2R_21294636_SNP [dm6]	C	A	3.336e^-5	0.449	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	562603	2L_562603_SNP [dm3] 2L_562603_SNP [dm6]	C	T	3.400e^-5	0.449	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	9647190	2R_9647190_SNP [dm3] 2R_13759685_SNP [dm6]	G	C	3.404e^-5	0.449	DOWNSTREAM CG6280 INTERGENIC
2R	10578309	2R_10578309_SNP [dm3] 2R_14690804_SNP [dm6]	C	A	3.407e^-5	0.449	INTRON mspo
3L	19960766	3L_19960766_SNP [dm3] 3L_19967666_SNP [dm6]	G	C	3.451e^-5	0.449	INTRON Ac76E
2L	20342456	2L_20342456_SNP [dm3] 2L_20342456_SNP [dm6]	A	G	3.455e^-5	0.449	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
2R	10709770	2R_10709770_SNP [dm3] 2R_14822265_SNP [dm6]	C	T	3.472e^-5	0.449	INTERGENIC
3L	18100385	3L_18100385_SNP [dm3] 3L_18107285_SNP [dm6]	A	G	3.481e^-5	0.449	SYNONYMOUS_CODING mRpS26 DOWNSTREAM CG5147	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17181878	2R_17181878_SNP [dm3] 2R_21294373_SNP [dm6]	G	T	3.495e^-5	0.449	UTR_3_PRIME RpL29 UPSTREAM Sgf29 DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14615508	3L_14615508_SNP [dm3] 3L_14622408_SNP [dm6]	T	C	3.496e^-5	0.449	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
X	7807594	X_7807594_SNP [dm3] X_7913561_SNP [dm6]	G	A	3.569e^-5	0.449	SYNONYMOUS_CODING snz
2R	7474782	2R_7474782_SNP [dm3] 2R_11587277_SNP [dm6]	G	T	3.604e^-5	0.449	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	14706717	2R_14706717_SNP [dm3] 2R_18819212_SNP [dm6]	A	G	3.618e^-5	0.449	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	3.655e^-5	0.449	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
X	7807023	X_7807023_SNP [dm3] X_7912990_SNP [dm6]	A	G	3.688e^-5	0.449	INTRON snz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7807540	X_7807540_SNP [dm3] X_7913507_SNP [dm6]	A	G	3.688e^-5	0.449	SYNONYMOUS_CODING snz
2R	9334599	2R_9334599_SNP [dm3] 2R_13447094_SNP [dm6]	A	G	3.716e^-5	0.449	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15220811	2R_15220811_SNP [dm3] 2R_19333306_SNP [dm6]	C	G	3.724e^-5	0.449	INTRON Rgk1 & 1 other
3L	18147184	3L_18147184_SNP [dm3] 3L_18154084_SNP [dm6]	A	G	3.753e^-5	0.449	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13710382	3R_13710382_SNP [dm3] 3R_17884660_SNP [dm6]	G	A	3.762e^-5	0.449	NON_SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14023584	2R_14023584_SNP [dm3] 2R_18136079_SNP [dm6]	G	C	3.763e^-5	0.449	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18070637	2R_18070637_SNP [dm3] 2R_22183132_SNP [dm6]	G	C	3.763e^-5	0.449	UPSTREAM MED16 & 1 other DOWNSTREAM CG11275 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	915211	2L_915211_SNP [dm3] 2L_915211_SNP [dm6]	A	G	3.779e^-5	0.449	NON_SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	17819140	2R_17819140_SNP [dm3] 2R_21931635_SNP [dm6]	T	C	3.879e^-5	0.452	INTRON Fili
2R	10577570	2R_10577570_SNP [dm3] 2R_14690065_SNP [dm6]	T	A	3.910e^-5	0.452	INTRON mspo
3R	14972226	3R_14972226_SNP [dm3] 3R_19146504_SNP [dm6]	G	A	3.926e^-5	0.452	INTRON Ppcs
3L	16797644	3L_16797644_SNP [dm3] 3L_16804544_SNP [dm6]	T	G	3.935e^-5	0.452	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
2R	10153693	2R_10153693_SNP [dm3] 2R_14266188_SNP [dm6]	G	A	3.968e^-5	0.452	INTRON CG8547
2L	8396799	2L_8396799_SNP [dm3] 2L_8396799_SNP [dm6]	G	T	3.972e^-5	0.452	SYNONYMOUS_CODING CG13385 UPSTREAM Peritrophin-15a	TF binding site mE1_TFBS_cad
2R	10787515	2R_10787515_SNP [dm3] 2R_14900010_SNP [dm6]	A	G	3.998e^-5	0.452	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10152800	2R_10152800_INS [dm3] 2R_14265295_INS [dm6]	T	TT	3.999e^-5	0.452	INTRON CG8547
2R	10787290	2R_10787290_SNP [dm3] 2R_14899785_SNP [dm6]	T	C	4.029e^-5	0.452	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5731501	3L_5731501_SNP [dm3] 3L_5738401_SNP [dm6]	T	C	4.048e^-5	0.452	INTRON sif
2L	20342459	2L_20342459_SNP [dm3] 2L_20342459_SNP [dm6]	A	T	4.083e^-5	0.452	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
3L	10484118	3L_10484118_SNP [dm3] 3L_10491018_SNP [dm6]	T	A	4.126e^-5	0.452	UTR_5_PRIME S-Lap4 INTRON A2bp1
2R	7473616	2R_7473616_SNP [dm3] 2R_11586111_SNP [dm6]	G	A	4.133e^-5	0.452	SYNONYMOUS_CODING tou
2R	18070630	2R_18070630_SNP [dm3] 2R_22183125_SNP [dm6]	C	A	4.157e^-5	0.452	UPSTREAM MED16 & 1 other DOWNSTREAM CG11275 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	12934984	X_12934984_SNP [dm3] X_13040951_SNP [dm6]	T	C	4.181e^-5	0.452	INTRON rad
2R	6858568	2R_6858568_DEL [dm3] 2R_10971063_DEL [dm6]	GAAATAG	G	4.212e^-5	0.452	INTERGENIC
2R	10787548	2R_10787548_SNP [dm3] 2R_14900043_SNP [dm6]	A	G	4.229e^-5	0.452	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9971927	2R_9971927_SNP [dm3] 2R_14084422_SNP [dm6]	A	T	4.256e^-5	0.452	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	14441223	2L_14441223_SNP [dm3] 2L_14441223_SNP [dm6]	G	A	4.265e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10243951	2L_10243951_SNP [dm3] 2L_10243951_SNP [dm6]	C	T	4.308e^-5	0.452	SYNONYMOUS_CODING chico INTRON CR44995	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	14706680	2R_14706680_SNP [dm3] 2R_18819175_SNP [dm6]	A	C	4.343e^-5	0.452	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13710356	3R_13710356_SNP [dm3] 3R_17884634_SNP [dm6]	G	A	4.348e^-5	0.452	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4133364	2L_4133364_SNP [dm3] 2L_4133364_SNP [dm6]	T	C	4.369e^-5	0.452	INTERGENIC
2L	19915232	2L_19915232_SNP [dm3] 2L_19915232_SNP [dm6]	T	A	4.382e^-5	0.452	INTRON sick	TF binding site mE1_TFBS_bab1
3L	21135631	3L_21135631_SNP [dm3] 3L_21142531_SNP [dm6]	A	G	4.440e^-5	0.453	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17937494	2L_17937494_SNP [dm3] 2L_17937494_SNP [dm6]	C	G	4.494e^-5	0.453	INTERGENIC
2L	13264654	2L_13264654_SNP [dm3] 2L_13264654_SNP [dm6]	A	T	4.516e^-5	0.453	DOWNSTREAM CG31848 INTRON CG44085
3R	13710453	3R_13710453_SNP [dm3] 3R_17884731_SNP [dm6]	G	T	4.517e^-5	0.453	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14994319	2L_14994319_SNP [dm3] 2L_14994319_SNP [dm6]	A	T	4.527e^-5	0.453	INTRON mol
2L	19806769	2L_19806769_SNP [dm3] 2L_19806769_SNP [dm6]	C	T	4.544e^-5	0.453	INTRON sick
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	4.665e^-5	0.458	INTRON mspo
3L	13321767	3L_13321767_SNP [dm3] 3L_13328667_SNP [dm6]	T	A	4.712e^-5	0.458	UPSTREAM CG14113 INTERGENIC
2R	18465549	2R_18465549_SNP [dm3] 2R_22578044_SNP [dm6]	G	A	4.738e^-5	0.458	INTRON dnr1
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	4.760e^-5	0.458	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11616992	3L_11616992_SNP [dm3] 3L_11623892_SNP [dm6]	A	G	4.767e^-5	0.458	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	17054078	2L_17054078_SNP [dm3] 2L_17054078_SNP [dm6]	T	G	4.817e^-5	0.458	INTERGENIC
2L	1655390	2L_1655390_SNP [dm3] 2L_1655390_SNP [dm6]	T	G	4.817e^-5	0.458	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	4.833e^-5	0.458	INTRON Snoo
2R	10666533	2R_10666533_SNP [dm3] 2R_14779028_SNP [dm6]	G	A	4.843e^-5	0.458	INTRON kn
X	17881100	X_17881100_SNP [dm3] X_17987067_SNP [dm6]	C	A	4.883e^-5	0.458	INTRON Sh
2L	1786670	2L_1786670_SNP [dm3] 2L_1786670_SNP [dm6]	G	A	4.899e^-5	0.458	INTERGENIC
2R	10787392	2R_10787392_SNP [dm3] 2R_14899887_SNP [dm6]	A	T	4.915e^-5	0.458	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1267484	3L_1267484_SNP [dm3] 3L_1267484_SNP [dm6]	A	G	4.917e^-5	0.458	INTRON CG9134
2L	19913184	2L_19913184_SNP [dm3] 2L_19913184_SNP [dm6]	A	G	4.947e^-5	0.458	SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
X	22137377	X_22137377_SNP [dm3] X_22735541_SNP [dm6]	A	T	4.953e^-5	0.458	INTRON CR44997
2L	4091409	2L_4091409_SNP [dm3] 2L_4091409_SNP [dm6]	A	C	5.014e^-5	0.461	INTRON ed
2R	10787521	2R_10787521_SNP [dm3] 2R_14900016_SNP [dm6]	C	T	5.096e^-5	0.464	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17222627	X_17222627_DEL [dm3] X_17328594_DEL [dm6]	TG	T	5.230e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10786122	2R_10786122_SNP [dm3] 2R_14898617_SNP [dm6]	C	A	5.234e^-5	0.464	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19783336	3L_19783336_SNP [dm3] 3L_19790236_SNP [dm6]	C	A	5.241e^-5	0.464	UTR_5_PRIME CG42637 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19172471	2R_19172471_SNP [dm3] 2R_23284948_SNP [dm6]	A	G	5.248e^-5	0.464	UTR_3_PRIME CG13541 UPSTREAM CG3124	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1454112	2L_1454112_SNP [dm3] 2L_1454112_SNP [dm6]	A	T	5.258e^-5	0.464	INTERGENIC
2R	10153979	2R_10153979_SNP [dm3] 2R_14266474_SNP [dm6]	A	G	5.288e^-5	0.464	INTRON CG8547
2L	1525709	2L_1525709_SNP [dm3] 2L_1525709_SNP [dm6]	C	T	5.300e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17824008	3R_17824008_SNP [dm3] 3R_21998286_SNP [dm6]	T	A	5.332e^-5	0.464	INTRON Eip93F
X	2895623	X_2895623_SNP [dm3] X_3001590_SNP [dm6]	T	A	5.357e^-5	0.464	INTRON kirre
2L	6296873	2L_6296873_SNP [dm3] 2L_6296873_SNP [dm6]	A	T	5.360e^-5	0.464	INTRON Ddr
2R	18704138	2R_18704138_SNP [dm3] 2R_22816633_SNP [dm6]	T	G	5.377e^-5	0.464	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
2L	17088640	2L_17088640_SNP [dm3] 2L_17088640_SNP [dm6]	G	A	5.383e^-5	0.464	UTR_3_PRIME CG12620
2L	3962243	2L_3962243_SNP [dm3] 2L_3962243_SNP [dm6]	A	G	5.393e^-5	0.464	INTRON fred
X	12291012	X_12291012_SNP [dm3] X_12396979_SNP [dm6]	A	G	5.471e^-5	0.467	INTERGENIC
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	5.483e^-5	0.467	DOWNSTREAM CR45322 EXON CR43416
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	5.525e^-5	0.468	INTRON Fili
2R	14706704	2R_14706704_SNP [dm3] 2R_18819199_SNP [dm6]	T	C	5.537e^-5	0.468	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10588716	2R_10588716_SNP [dm3] 2R_14701211_SNP [dm6]	G	A	5.569e^-5	0.468	INTRON mspo
X	17678663	X_17678663_SNP [dm3] X_17784630_SNP [dm6]	T	C	5.592e^-5	0.468	INTERGENIC
2R	10161403	2R_10161403_SNP [dm3] 2R_14273898_SNP [dm6]	C	T	5.708e^-5	0.476	SYNONYMOUS_CODING conv
X	17250853	X_17250853_SNP [dm3] X_17356820_SNP [dm6]	G	T	5.763e^-5	0.478	INTERGENIC
3R	23979487	3R_23979487_SNP [dm3] 3R_28153765_SNP [dm6]	G	A	5.799e^-5	0.479	INTRON CG34354
X	17250796	X_17250796_SNP [dm3] X_17356763_SNP [dm6]	G	A	5.908e^-5	0.486	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	11410944	2R_11410944_SNP [dm3] 2R_15523439_SNP [dm6]	A	C	5.982e^-5	0.49	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8631536	2R_8631536_DEL [dm3] 2R_12744031_DEL [dm6]	TGCGTAAGTTTAGTTTCGT...	T	6.034e^-5	0.492	INTRON CG42663	TF binding site mE1_TFBS_Trl
2L	18904006	2L_18904006_SNP [dm3] 2L_18904006_SNP [dm6]	A	G	6.098e^-5	0.495	INTERGENIC
X	19981215	X_19981215_SNP [dm3] X_20087182_SNP [dm6]	T	G	6.188e^-5	0.499	INTERGENIC
3L	3226814	3L_3226814_SNP [dm3] 3L_3226814_SNP [dm6]	C	T	6.198e^-5	0.499	INTRON CG11505	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6622341	2L_6622341_SNP [dm3] 2L_6622341_SNP [dm6]	T	C	6.279e^-5	0.501	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16951690	2L_16951690_SNP [dm3] 2L_16951690_SNP [dm6]	G	A	6.316e^-5	0.501	INTERGENIC
3L	12488121	3L_12488121_SNP [dm3] 3L_12495021_SNP [dm6]	A	T	6.340e^-5	0.501	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17066954	2L_17066954_SNP [dm3] 2L_17066954_SNP [dm6]	T	A	6.357e^-5	0.501	INTERGENIC
3L	8410445	3L_8410445_SNP [dm3] 3L_8417345_SNP [dm6]	C	T	6.360e^-5	0.501	SYNONYMOUS_CODING CG32354	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11615116	3L_11615116_SNP [dm3] 3L_11622016_SNP [dm6]	C	T	6.404e^-5	0.503	INTRON CG6084	TF binding site mE1_TFBS_sens
2L	19091466	2L_19091466_SNP [dm3] 2L_19091466_SNP [dm6]	T	A	6.435e^-5	0.503	INTRON Lim3
X	13735869	X_13735869_SNP [dm3] X_13841836_SNP [dm6]	T	G	6.464e^-5	0.503	INTRON AMPdeam
X	17258360	X_17258360_SNP [dm3] X_17364327_SNP [dm6]	T	G	6.545e^-5	0.505	INTERGENIC
3L	2964258	3L_2964258_SNP [dm3] 3L_2964258_SNP [dm6]	G	A	6.552e^-5	0.505	DOWNSTREAM Or63a INTERGENIC
X	16899067	X_16899067_SNP [dm3] X_17005034_SNP [dm6]	A	G	6.574e^-5	0.505	INTRON CG45002
3L	10748900	3L_10748900_DEL [dm3] 3L_10755800_DEL [dm6]	CA	C	6.613e^-5	0.506	INTERGENIC
2R	15159007	2R_15159007_SNP [dm3] 2R_19271502_SNP [dm6]	G	A	6.708e^-5	0.506	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	12840465	3L_12840465_SNP [dm3] 3L_12847365_SNP [dm6]	A	T	6.736e^-5	0.506	INTRON CG10948	TF binding site mE1_TFBS_kn
2L	4091338	2L_4091338_SNP [dm3] 2L_4091338_SNP [dm6]	A	G	6.742e^-5	0.506	INTRON ed
X	13911326	X_13911326_SNP [dm3] X_14017293_SNP [dm6]	T	G	6.751e^-5	0.506	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
3L	11617035	3L_11617035_INS [dm3] 3L_11623935_INS [dm6]	C	CC	6.756e^-5	0.506	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	9012959	2L_9012959_SNP [dm3] 2L_9012959_SNP [dm6]	T	G	6.777e^-5	0.506	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	6.819e^-5	0.506	INTERGENIC
2L	1137546	2L_1137546_SNP [dm3] 2L_1137546_SNP [dm6]	C	T	6.826e^-5	0.506	INTRON CG4577
2R	10153589	2R_10153589_SNP [dm3] 2R_14266084_SNP [dm6]	C	A	6.886e^-5	0.509	INTRON CG8547
2R	7628567	2R_7628567_SNP [dm3] 2R_11741062_SNP [dm6]	G	T	7.055e^-5	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2918965	2L_2918965_SNP [dm3] 2L_2918965_SNP [dm6]	T	A	7.077e^-5	0.517	INTRON lilli
2R	10152110	2R_10152110_SNP [dm3] 2R_14264605_SNP [dm6]	T	C	7.107e^-5	0.517	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	4091360	2L_4091360_SNP [dm3] 2L_4091360_SNP [dm6]	A	T	7.130e^-5	0.517	INTRON ed
X	3568751	X_3568751_DEL [dm3] X_3674718_DEL [dm6]	ATGTA	A	7.164e^-5	0.517	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9647005	2R_9647005_SNP [dm3] 2R_13759500_SNP [dm6]	T	C	7.173e^-5	0.517	DOWNSTREAM CG6280 INTERGENIC
3R	12044800	3R_12044800_SNP [dm3] 3R_16219078_SNP [dm6]	A	C	7.214e^-5	0.517	INTERGENIC
2L	17081741	2L_17081741_SNP [dm3] 2L_17081741_SNP [dm6]	G	A	7.215e^-5	0.517	INTERGENIC
3L	11616951	3L_11616951_SNP [dm3] 3L_11623851_SNP [dm6]	G	T	7.307e^-5	0.521	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	2916670	2L_2916670_SNP [dm3] 2L_2916670_SNP [dm6]	T	A	7.365e^-5	0.521	INTRON lilli
2R	10786139	2R_10786139_SNP [dm3] 2R_14898634_SNP [dm6]	C	A	7.371e^-5	0.521	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2425224	2L_2425224_SNP [dm3] 2L_2425224_SNP [dm6]	C	T	7.382e^-5	0.521	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	18904016	2L_18904016_SNP [dm3] 2L_18904016_SNP [dm6]	A	G	7.450e^-5	0.523	INTERGENIC
2L	8034210	2L_8034210_SNP [dm3] 2L_8034210_SNP [dm6]	G	T	7.498e^-5	0.524	INTRON CG7367 & 1 other
2L	2348632	2L_2348632_SNP [dm3] 2L_2348632_SNP [dm6]	T	A	7.543e^-5	0.524	INTRON CG9967 & 1 other
3L	11616990	3L_11616990_SNP [dm3] 3L_11623890_SNP [dm6]	T	A	7.546e^-5	0.524	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	9367459	2L_9367459_SNP [dm3] 2L_9367459_SNP [dm6]	G	A	7.607e^-5	0.527	UPSTREAM CG34181 INTERGENIC
2R	5638101	2R_5638101_SNP [dm3] 2R_9750596_SNP [dm6]	T	G	7.684e^-5	0.529	INTERGENIC
2L	3459137	2L_3459137_SNP [dm3] 2L_3459137_SNP [dm6]	G	A	7.704e^-5	0.529	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17224614	X_17224614_SNP [dm3] X_17330581_SNP [dm6]	A	G	7.723e^-5	0.529	INTERGENIC
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	7.766e^-5	0.529	INTRON Nox	TF binding site mE1_TFBS_chinmo
2R	667154	2R_667154_SNP [dm3] 2R_4779649_SNP [dm6]	T	A	7.782e^-5	0.529	DOWNSTREAM CR43281 INTERGENIC	transposable element FlyBase
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	7.886e^-5	0.534	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
3L	12312709	3L_12312709_SNP [dm3] 3L_12319609_SNP [dm6]	A	C	7.997e^-5	0.536	INTERGENIC
3L	20458643	3L_20458643_SNP [dm3] 3L_20465543_SNP [dm6]	G	T	8.036e^-5	0.536	SPLICE_SITE_REGION CG42764 UPSTREAM CG5195 INTRON CG42764
2R	14706695	2R_14706695_SNP [dm3] 2R_18819190_SNP [dm6]	G	A	8.049e^-5	0.536	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14441118	2L_14441118_DEL [dm3] 2L_14441118_DEL [dm6]	CTATG	C	8.081e^-5	0.536	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10516925	2R_10516925_SNP [dm3] 2R_14629420_SNP [dm6]	C	A	8.081e^-5	0.536	UPSTREAM CG10131 INTERGENIC
2R	4107003	2R_4107003_SNP [dm3] 2R_8219498_SNP [dm6]	A	G	8.085e^-5	0.536	INTRON LRP1
2L	9378551	2L_9378551_SNP [dm3] 2L_9378551_SNP [dm6]	C	A	8.116e^-5	0.536	INTRON Shawl
3L	2991479	3L_2991479_SNP [dm3] 3L_2991479_SNP [dm6]	T	A	8.218e^-5	0.541	INTERGENIC
2R	17190256	2R_17190256_SNP [dm3] 2R_21302751_SNP [dm6]	C	T	8.243e^-5	0.541	INTRON CG42672
2L	17804869	2L_17804869_SNP [dm3] 2L_17804869_SNP [dm6]	C	T	8.272e^-5	0.541	INTRON CadN2
2R	12692867	2R_12692867_SNP [dm3] 2R_16805362_SNP [dm6]	C	T	8.317e^-5	0.542	INTERGENIC
3L	11616954	3L_11616954_SNP [dm3] 3L_11623854_SNP [dm6]	G	T	8.402e^-5	0.542	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	10589127	2R_10589127_INS [dm3] 2R_14701622_INS [dm6]	T	TT	8.418e^-5	0.542	INTRON mspo
2L	19908911	2L_19908911_SNP [dm3] 2L_19908911_SNP [dm6]	G	A	8.440e^-5	0.542	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	17775940	2R_17775940_SNP [dm3] 2R_21888435_SNP [dm6]	G	A	8.453e^-5	0.542	INTRON Fili
3R	23981832	3R_23981832_SNP [dm3] 3R_28156110_SNP [dm6]	T	A	8.474e^-5	0.542	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10785994	2R_10785994_SNP [dm3] 2R_14898489_SNP [dm6]	G	T	8.563e^-5	0.544	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	7807284	X_7807284_SNP [dm3] X_7913251_SNP [dm6]	A	T	8.576e^-5	0.544	INTRON snz
2L	16401064	2L_16401064_SNP [dm3] 2L_16401064_SNP [dm6]	A	G	8.583e^-5	0.544	INTRON CG5888
3R	2674822	3R_2674822_SNP [dm3] 3R_6849100_SNP [dm6]	G	C	8.669e^-5	0.546	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12243980	2R_12243980_SNP [dm3] 2R_16356475_SNP [dm6]	A	C	8.704e^-5	0.546	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18767340	2L_18767340_SNP [dm3] 2L_18767340_SNP [dm6]	G	T	8.709e^-5	0.546	INTRON ham
3L	1267036	3L_1267036_SNP [dm3] 3L_1267036_SNP [dm6]	C	A	8.760e^-5	0.548	INTRON CG9134
2L	4079388	2L_4079388_SNP [dm3] 2L_4079388_SNP [dm6]	T	C	8.834e^-5	0.548	INTRON ed
3L	4341262	3L_4341262_SNP [dm3] 3L_4341262_SNP [dm6]	C	T	8.850e^-5	0.548	INTRON Cip4
3L	10938725	3L_10938725_SNP [dm3] 3L_10945625_SNP [dm6]	G	A	8.877e^-5	0.548	DOWNSTREAM CG34050 INTERGENIC
2L	6238483	2L_6238483_SNP [dm3] 2L_6238483_SNP [dm6]	C	T	8.900e^-5	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	3701311	2L_3701311_SNP [dm3] 2L_3701311_SNP [dm6]	G	A	8.914e^-5	0.548	NON_SYNONYMOUS_CODING CG42467 UPSTREAM CG43145 DOWNSTREAM CG42465 & 1 other
3L	14156348	3L_14156348_SNP [dm3] 3L_14163248_SNP [dm6]	C	A	8.976e^-5	0.55	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	13977638	3L_13977638_SNP [dm3] 3L_13984538_SNP [dm6]	C	G	9.024e^-5	0.55	INTRON CG17364
2R	7474864	2R_7474864_SNP [dm3] 2R_11587359_SNP [dm6]	C	T	9.032e^-5	0.55	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	17060807	2L_17060807_SNP [dm3] 2L_17060807_SNP [dm6]	G	A	9.102e^-5	0.552	INTERGENIC
2L	17944451	2L_17944451_SNP [dm3] 2L_17944451_SNP [dm6]	G	T	9.148e^-5	0.553	INTERGENIC
3L	15944390	3L_15944390_SNP [dm3] 3L_15951290_SNP [dm6]	T	A	9.216e^-5	0.556	INTRON Pka-C3
2R	13674857	2R_13674857_SNP [dm3] 2R_17787352_SNP [dm6]	C	T	9.314e^-5	0.559	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17775947	2R_17775947_SNP [dm3] 2R_21888442_SNP [dm6]	C	A	9.358e^-5	0.559	INTRON Fili
2R	17819219	2R_17819219_SNP [dm3] 2R_21931714_SNP [dm6]	T	A	9.412e^-5	0.559	INTRON Fili
3L	6292430	3L_6292430_INS [dm3] 3L_6299330_INS [dm6]	T	TT	9.418e^-5	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7174015	2L_7174015_SNP [dm3] 2L_7174015_SNP [dm6]	T	A	9.430e^-5	0.559	DOWNSTREAM CR44610 INTERGENIC
2R	10151161	2R_10151161_SNP [dm3] 2R_14263656_SNP [dm6]	A	T	9.468e^-5	0.559	NON_SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17065350	2L_17065350_SNP [dm3] 2L_17065350_SNP [dm6]	G	A	9.514e^-5	0.559	INTERGENIC
2R	10666527	2R_10666527_SNP [dm3] 2R_14779022_SNP [dm6]	G	C	9.528e^-5	0.559	INTRON kn
3L	9356600	3L_9356600_SNP [dm3] 3L_9363500_SNP [dm6]	A	G	9.590e^-5	0.559	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
2R	10589092	2R_10589092_SNP [dm3] 2R_14701587_SNP [dm6]	G	A	9.664e^-5	0.559	INTRON mspo
3L	11616987	3L_11616987_SNP [dm3] 3L_11623887_SNP [dm6]	A	T	9.693e^-5	0.559	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11616997	3L_11616997_SNP [dm3] 3L_11623897_SNP [dm6]	A	C	9.693e^-5	0.559	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	19908906	2L_19908906_INS [dm3] 2L_19908906_INS [dm6]	T	TTGAATGT	9.703e^-5	0.559	INTRON sick	TF binding site mE1_TFBS_chinmo
3L	14615530	3L_14615530_SNP [dm3] 3L_14622430_SNP [dm6]	C	T	9.758e^-5	0.559	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3L	3237161	3L_3237161_SNP [dm3] 3L_3237161_SNP [dm6]	A	T	9.784e^-5	0.559	UTR_3_PRIME CG17746 DOWNSTREAM CG11505	TF binding site mE1_TFBS_cad
2L	5116537	2L_5116537_SNP [dm3] 2L_5116537_SNP [dm6]	T	A	9.836e^-5	0.559	INTRON Msp300
3R	3984027	3R_3984027_SNP [dm3] 3R_8158305_SNP [dm6]	T	A	9.863e^-5	0.559	INTRON grn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10186828	2R_10186828_SNP [dm3] 2R_14299323_SNP [dm6]	C	T	9.869e^-5	0.559	UTR_3_PRIME Ih DOWNSTREAM Ih & 1 other
2R	17183066	2R_17183066_SNP [dm3] 2R_21295561_SNP [dm6]	G	A	1.002e^-4	0.559	START_GAINED CG9752 UTR_5_PRIME CG9752 UPSTREAM CG42672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11049033	2R_11049033_SNP [dm3] 2R_15161528_SNP [dm6]	C	A	1.005e^-4	0.559	INTRON igl
2R	8702111	2R_8702111_SNP [dm3] 2R_12814606_SNP [dm6]	C	T	1.005e^-4	0.559	INTERGENIC
2L	6573416	2L_6573416_SNP [dm3] 2L_6573416_SNP [dm6]	C	T	1.006e^-4	0.559	INTRON CG11319
2R	10788778	2R_10788778_SNP [dm3] 2R_14901273_SNP [dm6]	T	C	1.006e^-4	0.559	UTR_3_PRIME Cyp317a1 DOWNSTREAM CG10249 & 1 other
2R	13288047	2R_13288047_SNP [dm3] 2R_17400542_SNP [dm6]	C	T	1.007e^-4	0.559	INTRON Sip1
2L	3142213	2L_3142213_SNP [dm3] 2L_3142213_SNP [dm6]	T	C	1.011e^-4	0.559	INTRON toc
2L	3142214	2L_3142214_SNP [dm3] 2L_3142214_SNP [dm6]	A	T	1.011e^-4	0.559	INTRON toc
2R	11100105	2R_11100105_SNP [dm3] 2R_15212600_SNP [dm6]	C	A	1.012e^-4	0.559	INTRON row
2R	9414596	2R_9414596_SNP [dm3] 2R_13527091_SNP [dm6]	T	A	1.013e^-4	0.559	DOWNSTREAM CG13332 INTRON Vmat
2R	11296851	2R_11296851_SNP [dm3] 2R_15409346_SNP [dm6]	A	G	1.017e^-4	0.559	DOWNSTREAM Mtk INTRON CG43729
3L	1026350	3L_1026350_SNP [dm3] 3L_1026350_SNP [dm6]	A	C	1.019e^-4	0.559	SPLICE_SITE_REGION trio INTRON trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9632130	2R_9632130_SNP [dm3] 2R_13744625_SNP [dm6]	A	G	1.020e^-4	0.559	INTRON fas
2R	10376657	2R_10376657_SNP [dm3] 2R_14489152_SNP [dm6]	C	T	1.029e^-4	0.559	INTRON L
2L	375595	2L_375595_SNP [dm3] 2L_375595_SNP [dm6]	G	T	1.029e^-4	0.559	INTERGENIC
2R	10597507	2R_10597507_SNP [dm3] 2R_14710002_SNP [dm6]	A	T	1.031e^-4	0.559	INTRON mspo
2R	10155724	2R_10155724_SNP [dm3] 2R_14268219_SNP [dm6]	A	C	1.032e^-4	0.559	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8701950	2R_8701950_SNP [dm3] 2R_12814445_SNP [dm6]	T	G	1.036e^-4	0.56	INTERGENIC
2L	793044	2L_793044_SNP [dm3] 2L_793044_SNP [dm6]	G	T	1.039e^-4	0.56	INTERGENIC
2R	10186137	2R_10186137_SNP [dm3] 2R_14298632_SNP [dm6]	A	T	1.052e^-4	0.562	UTR_3_PRIME Ih
2L	5116507	2L_5116507_SNP [dm3] 2L_5116507_SNP [dm6]	T	G	1.057e^-4	0.562	INTRON Msp300
X	11314428	X_11314428_INS [dm3] X_11420395_INS [dm6]	A	AA	1.057e^-4	0.562	INTERGENIC
3L	11605101	3L_11605101_SNP [dm3] 3L_11612001_SNP [dm6]	G	A	1.059e^-4	0.562	NON_SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7476111	2R_7476111_SNP [dm3] 2R_11588606_SNP [dm6]	C	G	1.060e^-4	0.562	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
2R	12999725	2R_12999725_SNP [dm3] 2R_17112220_SNP [dm6]	C	G	1.061e^-4	0.562	INTRON CG15611
2R	11661653	2R_11661653_SNP [dm3] 2R_15774148_SNP [dm6]	G	C	1.064e^-4	0.562	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	20392019	3L_20392019_SNP [dm3] 3L_20398919_SNP [dm6]	T	C	1.077e^-4	0.565	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11773774	X_11773774_SNP [dm3] X_11879741_SNP [dm6]	G	A	1.080e^-4	0.565	SYNONYMOUS_CODING CG10353
3L	15429695	3L_15429695_SNP [dm3] 3L_15436595_SNP [dm6]	C	A	1.081e^-4	0.565	UPSTREAM CR43625 INTERGENIC
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	1.085e^-4	0.565	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11617086	3L_11617086_SNP [dm3] 3L_11623986_SNP [dm6]	C	T	1.086e^-4	0.565	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	18000246	2L_18000246_SNP [dm3] 2L_18000246_SNP [dm6]	A	G	1.089e^-4	0.565	INTERGENIC
X	21284220	X_21284220_SNP [dm3] X_21413193_SNP [dm6]	A	T	1.090e^-4	0.565	INTERGENIC
3L	11617017	3L_11617017_INS [dm3] 3L_11623917_INS [dm6]	T	TTTT	1.099e^-4	0.567	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	16235893	2L_16235893_SNP [dm3] 2L_16235893_SNP [dm6]	T	C	1.103e^-4	0.567	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11740071	2R_11740071_SNP [dm3] 2R_15852566_SNP [dm6]	A	G	1.104e^-4	0.567	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9971969	2R_9971969_SNP [dm3] 2R_14084464_SNP [dm6]	T	C	1.106e^-4	0.567	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	12339516	2L_12339516_SNP [dm3] 2L_12339516_SNP [dm6]	G	A	1.113e^-4	0.567	DOWNSTREAM CG31862 INTERGENIC
3L	11617010	3L_11617010_SNP [dm3] 3L_11623910_SNP [dm6]	C	T	1.118e^-4	0.567	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	8250061	2L_8250061_SNP [dm3] 2L_8250061_SNP [dm6]	A	G	1.119e^-4	0.567	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	9063578	X_9063578_SNP [dm3] X_9169545_SNP [dm6]	C	T	1.119e^-4	0.567	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2R	3521945	2R_3521945_SNP [dm3] 2R_7634440_SNP [dm6]	C	A	1.121e^-4	0.567	DOWNSTREAM CG43341 INTRON CG43340 EXON CR45131
2R	17619694	2R_17619694_DEL [dm3] 2R_21732189_DEL [dm6]	GTCAGCAGTGATTTTAGA...	G	1.137e^-4	0.57	INTERGENIC
2R	7475985	2R_7475985_SNP [dm3] 2R_11588480_SNP [dm6]	G	T	1.137e^-4	0.57	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	1.140e^-4	0.57	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	10572926	2R_10572926_SNP [dm3] 2R_14685421_SNP [dm6]	T	A	1.140e^-4	0.57	INTRON mspo
2R	10180722	2R_10180722_SNP [dm3] 2R_14293217_SNP [dm6]	G	A	1.149e^-4	0.57	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
2R	8145432	2R_8145432_INS [dm3] 2R_12257927_INS [dm6]	TC	AAT	1.150e^-4	0.57	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3L	11616994	3L_11616994_SNP [dm3] 3L_11623894_SNP [dm6]	A	T	1.150e^-4	0.57	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	9378480	2L_9378480_SNP [dm3] 2L_9378480_SNP [dm6]	T	A	1.151e^-4	0.57	INTRON Shawl
3L	2284793	3L_2284793_SNP [dm3] 3L_2284793_SNP [dm6]	C	G	1.164e^-4	0.573	INTRON MsR2
2L	8678038	2L_8678038_SNP [dm3] 2L_8678038_SNP [dm6]	T	A	1.165e^-4	0.573	INTRON CG9287
2R	12243921	2R_12243921_SNP [dm3] 2R_16356416_SNP [dm6]	G	A	1.172e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16099234	2R_16099234_SNP [dm3] 2R_20211729_SNP [dm6]	C	A	1.181e^-4	0.577	NON_SYNONYMOUS_CODING CG16894
2L	6660511	2L_6660511_SNP [dm3] 2L_6660511_SNP [dm6]	C	T	1.188e^-4	0.577	SYNONYMOUS_CODING CG11070	TF binding site mE1_TFBS_cad
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	1.192e^-4	0.577	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
X	13911390	X_13911390_DEL [dm3] X_14017357_DEL [dm6]	AG	A	1.193e^-4	0.577	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
2L	12991827	2L_12991827_SNP [dm3] 2L_12991827_SNP [dm6]	A	T	1.199e^-4	0.577	INTERGENIC
2L	12991843	2L_12991843_SNP [dm3] 2L_12991843_SNP [dm6]	T	G	1.199e^-4	0.577	INTERGENIC
3L	11617099	3L_11617099_SNP [dm3] 3L_11623999_SNP [dm6]	A	G	1.199e^-4	0.577	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	13321797	3L_13321797_SNP [dm3] 3L_13328697_SNP [dm6]	C	G	1.205e^-4	0.577	UPSTREAM CG14113 INTERGENIC
3L	16329788	3L_16329788_SNP [dm3] 3L_16336688_SNP [dm6]	C	A	1.207e^-4	0.577	INTERGENIC
2R	7467531	2R_7467531_SNP [dm3] 2R_11580026_SNP [dm6]	A	T	1.209e^-4	0.577	INTRON tou
2R	7467537	2R_7467537_SNP [dm3] 2R_11580032_SNP [dm6]	T	A	1.209e^-4	0.577	INTRON tou
2R	17504556	2R_17504556_INS [dm3] 2R_21617051_INS [dm6]	G	GG	1.216e^-4	0.579	UPSTREAM CG18870 DOWNSTREAM clt INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10161527	2R_10161527_SNP [dm3] 2R_14274022_SNP [dm6]	T	C	1.228e^-4	0.579	NON_SYNONYMOUS_CODING conv
3L	1131908	3L_1131908_SNP [dm3] 3L_1131908_SNP [dm6]	T	C	1.239e^-4	0.579	INTERGENIC	regulatory region REDfly_CRMs
3R	18517190	3R_18517190_SNP [dm3] 3R_22691468_SNP [dm6]	G	A	1.240e^-4	0.579	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10172075	2R_10172075_SNP [dm3] 2R_14284570_SNP [dm6]	T	C	1.244e^-4	0.579	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7467577	2R_7467577_SNP [dm3] 2R_11580072_SNP [dm6]	G	T	1.251e^-4	0.579	SYNONYMOUS_CODING tou
2L	849800	2L_849800_SNP [dm3] 2L_849800_SNP [dm6]	C	T	1.253e^-4	0.579	UPSTREAM CR44060 INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	2685255	2L_2685255_SNP [dm3] 2L_2685255_SNP [dm6]	T	C	1.255e^-4	0.579	INTRON CG31690
X	8707163	X_8707163_SNP [dm3] X_8813130_SNP [dm6]	G	A	1.256e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1026005	3L_1026005_SNP [dm3] 3L_1026005_SNP [dm6]	T	C	1.257e^-4	0.579	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7483030	2R_7483030_SNP [dm3] 2R_11595525_SNP [dm6]	G	A	1.257e^-4	0.579	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12097892	2L_12097892_SNP [dm3] 2L_12097892_SNP [dm6]	T	C	1.264e^-4	0.579	UTR_5_PRIME Ced-12 DOWNSTREAM Mt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	5415749	3L_5415749_SNP [dm3] 3L_5422649_SNP [dm6]	A	C	1.267e^-4	0.579	INTERGENIC
X	18351380	X_18351380_SNP [dm3] X_18457347_SNP [dm6]	T	C	1.270e^-4	0.579	INTRON CG32547
2L	562600	2L_562600_SNP [dm3] 2L_562600_SNP [dm6]	T	G	1.275e^-4	0.579	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	562607	2L_562607_SNP [dm3] 2L_562607_SNP [dm6]	G	A	1.275e^-4	0.579	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	7463829	2R_7463829_SNP [dm3] 2R_11576324_SNP [dm6]	C	A	1.276e^-4	0.579	INTERGENIC
2L	19411905	2L_19411905_SNP [dm3] 2L_19411905_SNP [dm6]	G	C	1.285e^-4	0.579	UPSTREAM Pax INTRON Pax
2L	21039302	2L_21039302_SNP [dm3] 2L_21039302_SNP [dm6]	C	T	1.285e^-4	0.579	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12984946	2R_12984946_SNP [dm3] 2R_17097441_SNP [dm6]	G	A	1.285e^-4	0.579	START_GAINED GstS1 UTR_5_PRIME GstS1 UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13674877	2R_13674877_SNP [dm3] 2R_17787372_SNP [dm6]	T	C	1.289e^-4	0.579	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	11616971	3L_11616971_SNP [dm3] 3L_11623871_SNP [dm6]	G	A	1.290e^-4	0.579	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	16099233	2R_16099233_SNP [dm3] 2R_20211728_SNP [dm6]	A	C	1.293e^-4	0.579	SYNONYMOUS_CODING CG16894
2R	7474883	2R_7474883_SNP [dm3] 2R_11587378_SNP [dm6]	C	T	1.295e^-4	0.579	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10154658	2R_10154658_SNP [dm3] 2R_14267153_SNP [dm6]	A	G	1.301e^-4	0.579	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14706709	2R_14706709_SNP [dm3] 2R_18819204_SNP [dm6]	G	A	1.301e^-4	0.579	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7472182	2R_7472182_SNP [dm3] 2R_11584677_SNP [dm6]	A	G	1.302e^-4	0.579	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19919634	2L_19919634_SNP [dm3] 2L_19919634_SNP [dm6]	T	C	1.302e^-4	0.579	UPSTREAM CR43828 INTRON sick
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	1.303e^-4	0.579	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6184541	2L_6184541_SNP [dm3] 2L_6184541_SNP [dm6]	T	G	1.313e^-4	0.58	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2918575	2L_2918575_SNP [dm3] 2L_2918575_SNP [dm6]	A	T	1.315e^-4	0.58	INTRON lilli
2R	11044645	2R_11044645_SNP [dm3] 2R_15157140_SNP [dm6]	T	A	1.317e^-4	0.58	INTRON igl
3R	2823566	3R_2823566_SNP [dm3] 3R_6997844_SNP [dm6]	A	G	1.319e^-4	0.58	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9878286	2L_9878286_SNP [dm3] 2L_9878286_SNP [dm6]	G	C	1.322e^-4	0.58	INTRON nAChRalpha6
X	13911335	X_13911335_SNP [dm3] X_14017302_SNP [dm6]	T	C	1.323e^-4	0.58	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
3R	15318799	3R_15318799_SNP [dm3] 3R_19493077_SNP [dm6]	C	T	1.330e^-4	0.581	INTRON Dys
3L	3222470	3L_3222470_SNP [dm3] 3L_3222470_SNP [dm6]	C	T	1.332e^-4	0.581	UTR_5_PRIME RpL28 UPSTREAM snoRNA:Me28S-C3351 & 4 others DOWNSTREAM snoRNA:Or-CD11a INTRON RpL28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10516759	2R_10516759_SNP [dm3] 2R_14629254_SNP [dm6]	C	A	1.335e^-4	0.581	UPSTREAM CG10131 INTERGENIC
3L	1832136	3L_1832136_SNP [dm3] 3L_1832136_SNP [dm6]	A	T	1.339e^-4	0.582	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
2R	7619836	2R_7619836_DEL [dm3] 2R_11732331_DEL [dm6]	CAGCCTGTC	C	1.356e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15059588	2R_15059588_SNP [dm3] 2R_19172083_SNP [dm6]	G	A	1.363e^-4	0.589	INTRON CG10737
2R	10371682	2R_10371682_SNP [dm3] 2R_14484177_SNP [dm6]	G	T	1.373e^-4	0.592	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10516804	2R_10516804_SNP [dm3] 2R_14629299_SNP [dm6]	A	T	1.379e^-4	0.593	UPSTREAM CG10131 INTERGENIC
3L	7108208	3L_7108208_SNP [dm3] 3L_7115108_SNP [dm6]	C	A	1.384e^-4	0.593	INTRON form3
X	18212307	X_18212307_SNP [dm3] X_18318274_SNP [dm6]	A	T	1.385e^-4	0.593	INTRON CG6023
3L	13438763	3L_13438763_SNP [dm3] 3L_13445663_SNP [dm6]	C	T	1.388e^-4	0.593	SYNONYMOUS_CODING CG10732 INTRON CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7234795	3L_7234795_SNP [dm3] 3L_7241695_SNP [dm6]	T	A	1.391e^-4	0.593	UTR_5_PRIME Neos UPSTREAM Neos & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12890394	3L_12890394_SNP [dm3] 3L_12897294_SNP [dm6]	G	A	1.405e^-4	0.598	INTERGENIC
2L	1137551	2L_1137551_SNP [dm3] 2L_1137551_SNP [dm6]	C	T	1.421e^-4	0.598	INTRON CG4577
2R	10597440	2R_10597440_SNP [dm3] 2R_14709935_SNP [dm6]	G	A	1.421e^-4	0.598	INTRON mspo
2R	10813235	2R_10813235_DEL [dm3] 2R_14925730_DEL [dm6]	AAGAA	A	1.423e^-4	0.598	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4924679	2L_4924679_SNP [dm3] 2L_4924679_SNP [dm6]	C	T	1.423e^-4	0.598	INTRON hoe1
X	16899044	X_16899044_SNP [dm3] X_17005011_SNP [dm6]	A	G	1.425e^-4	0.598	INTRON CG45002
3L	14610884	3L_14610884_SNP [dm3] 3L_14617784_SNP [dm6]	T	C	1.426e^-4	0.598	INTRON shd	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	12018903	2L_12018903_SNP [dm3] 2L_12018903_SNP [dm6]	G	C	1.435e^-4	0.6	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad
X	4925342	X_4925342_SNP [dm3] X_5031309_SNP [dm6]	A	T	1.439e^-4	0.6	INTRON CR44833
3L	19781813	3L_19781813_SNP [dm3] 3L_19788713_SNP [dm6]	A	T	1.439e^-4	0.6	INTRON CG42637 & 1 other
3L	7616215	3L_7616215_SNP [dm3] 3L_7623115_SNP [dm6]	C	G	1.449e^-4	0.601	INTRON CG33275	TF binding site BDTNP1_TFBS_dl
3R	15640532	3R_15640532_SNP [dm3] 3R_19814810_SNP [dm6]	A	C	1.449e^-4	0.601	INTRON bnl
2R	10187259	2R_10187259_SNP [dm3] 2R_14299754_SNP [dm6]	C	T	1.457e^-4	0.603	UTR_3_PRIME Ih DOWNSTREAM Ih & 1 other
2R	10164052	2R_10164052_DEL [dm3] 2R_14276547_DEL [dm6]	AAA	A	1.460e^-4	0.603	UTR_5_PRIME Ih INTRON Ih
2R	10154655	2R_10154655_INS [dm3] 2R_14267150_INS [dm6]	A	AATTTCCGA	1.462e^-4	0.603	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17248700	X_17248700_SNP [dm3] X_17354667_SNP [dm6]	G	C	1.465e^-4	0.603	INTERGENIC
2L	6875252	2L_6875252_SNP [dm3] 2L_6875252_SNP [dm6]	A	G	1.471e^-4	0.603	UTR_5_PRIME Nlg2 DOWNSTREAM CR44914	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16159947	X_16159947_SNP [dm3] X_16265914_SNP [dm6]	C	T	1.473e^-4	0.603	INTRON CG12507
2R	18465239	2R_18465239_SNP [dm3] 2R_22577734_SNP [dm6]	C	G	1.485e^-4	0.605	INTRON dnr1
2L	1912752	2L_1912752_SNP [dm3] 2L_1912752_SNP [dm6]	G	A	1.486e^-4	0.605	INTRON CG7337
2R	17172137	2R_17172137_SNP [dm3] 2R_21284632_SNP [dm6]	G	A	1.489e^-4	0.605	DOWNSTREAM CG10505 INTRON MFS16
2L	8293295	2L_8293295_SNP [dm3] 2L_8293295_SNP [dm6]	G	A	1.489e^-4	0.605	INTRON Btk29A
2R	10104375	2R_10104375_SNP [dm3] 2R_14216870_SNP [dm6]	G	T	1.494e^-4	0.605	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	16880595	X_16880595_SNP [dm3] X_16986562_SNP [dm6]	T	A	1.497e^-4	0.605	INTRON CG45002
X	6650855	X_6650855_SNP [dm3] X_6756822_SNP [dm6]	T	C	1.500e^-4	0.605	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10182300	2R_10182300_SNP [dm3] 2R_14294795_SNP [dm6]	T	G	1.510e^-4	0.605	UTR_3_PRIME Ih INTRON Ih
3R	25403404	3R_25403404_SNP [dm3] 3R_29577682_SNP [dm6]	G	A	1.510e^-4	0.605	INTERGENIC
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	1.511e^-4	0.605	INTRON mspo
3L	4109940	3L_4109940_SNP [dm3] 3L_4109940_SNP [dm6]	A	T	1.516e^-4	0.606	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3268254	2L_3268254_SNP [dm3] 2L_3268254_SNP [dm6]	T	C	1.519e^-4	0.606	UPSTREAM CR44484 INTERGENIC
3L	11751791	3L_11751791_SNP [dm3] 3L_11758691_SNP [dm6]	A	G	1.522e^-4	0.606	INTRON CG6024
3L	1453461	3L_1453461_SNP [dm3] 3L_1453461_SNP [dm6]	A	G	1.530e^-4	0.608	INTRON Ptp61F
2R	17180522	2R_17180522_SNP [dm3] 2R_21293017_SNP [dm6]	A	T	1.533e^-4	0.608	UPSTREAM CG30392 & 1 other INTRON Sgf29	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
2R	17301624	2R_17301624_SNP [dm3] 2R_21414119_SNP [dm6]	A	C	1.542e^-4	0.608	INTRON Sdc
3R	15953934	3R_15953934_SNP [dm3] 3R_20128212_SNP [dm6]	T	C	1.546e^-4	0.608	INTERGENIC
2R	14022325	2R_14022325_SNP [dm3] 2R_18134820_SNP [dm6]	C	T	1.549e^-4	0.608	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2555831	2L_2555831_SNP [dm3] 2L_2555831_SNP [dm6]	C	G	1.549e^-4	0.608	EXON CR44113
2R	18051252	2R_18051252_SNP [dm3] 2R_22163747_SNP [dm6]	G	T	1.550e^-4	0.608	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	6513749	3L_6513749_SNP [dm3] 3L_6520649_SNP [dm6]	G	A	1.561e^-4	0.611	INTRON sfl
3L	14581782	3L_14581782_SNP [dm3] 3L_14588682_SNP [dm6]	G	T	1.571e^-4	0.613	INTRON HGTX
2L	10411391	2L_10411391_SNP [dm3] 2L_10411391_SNP [dm6]	T	C	1.574e^-4	0.613	DOWNSTREAM RpS27A INTRON CG5355	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17301627	2R_17301627_SNP [dm3] 2R_21414122_SNP [dm6]	G	C	1.577e^-4	0.613	INTRON Sdc
3L	13346070	3L_13346070_SNP [dm3] 3L_13352970_SNP [dm6]	G	A	1.580e^-4	0.613	SYNONYMOUS_CODING CG17687
2R	17775930	2R_17775930_SNP [dm3] 2R_21888425_SNP [dm6]	G	C	1.581e^-4	0.613	INTRON Fili
3L	9896934	3L_9896934_DEL [dm3] 3L_9903834_DEL [dm6]	AGAATAAAAGATAAATTGGT...	A	1.591e^-4	0.615	DOWNSTREAM nudE INTERGENIC
X	12877901	X_12877901_MNP [dm3] X_12983868_MNP [dm6]	TAT	ATA	1.594e^-4	0.615	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15953931	3R_15953931_SNP [dm3] 3R_20128209_SNP [dm6]	A	C	1.599e^-4	0.616	INTERGENIC
2L	4079408	2L_4079408_SNP [dm3] 2L_4079408_SNP [dm6]	A	T	1.609e^-4	0.618	INTRON ed
2L	3272651	2L_3272651_SNP [dm3] 2L_3272651_SNP [dm6]	T	C	1.615e^-4	0.619	DOWNSTREAM CG3347 INTERGENIC
2R	14715196	2R_14715196_SNP [dm3] 2R_18827691_SNP [dm6]	T	C	1.621e^-4	0.619	INTRON CG15097
3L	2991509	3L_2991509_SNP [dm3] 3L_2991509_SNP [dm6]	T	C	1.621e^-4	0.619	INTERGENIC
2R	10608720	2R_10608720_SNP [dm3] 2R_14721215_SNP [dm6]	C	G	1.649e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7953695	2L_7953695_SNP [dm3] 2L_7953695_SNP [dm6]	C	T	1.654e^-4	0.628	INTRON Snoo
2L	840348	2L_840348_DEL [dm3] 2L_840348_DEL [dm6]	GAG	G	1.657e^-4	0.628	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2256434	2L_2256434_SNP [dm3] 2L_2256434_SNP [dm6]	G	A	1.658e^-4	0.628	INTERGENIC
X	3899186	X_3899186_SNP [dm3] X_4005153_SNP [dm6]	A	C	1.662e^-4	0.628	INTERGENIC
2R	15595812	2R_15595812_SNP [dm3] 2R_19708307_SNP [dm6]	G	A	1.664e^-4	0.628	INTERGENIC
2L	8250224	2L_8250224_SNP [dm3] 2L_8250224_SNP [dm6]	G	T	1.671e^-4	0.629	SPLICE_SITE_REGION CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	16159938	X_16159938_SNP [dm3] X_16265905_SNP [dm6]	T	C	1.677e^-4	0.629	INTRON CG12507
2L	10468503	2L_10468503_SNP [dm3] 2L_10468503_SNP [dm6]	C	T	1.680e^-4	0.629	INTRON RluA-1
2R	7476182	2R_7476182_SNP [dm3] 2R_11588677_SNP [dm6]	T	A	1.690e^-4	0.629	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
3L	11617004	3L_11617004_INS [dm3] 3L_11623904_INS [dm6]	T	TGATAC	1.692e^-4	0.629	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	10156115	2R_10156115_SNP [dm3] 2R_14268610_SNP [dm6]	T	C	1.695e^-4	0.629	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	1.696e^-4	0.629	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	3392324	2L_3392324_SNP [dm3] 2L_3392324_SNP [dm6]	G	T	1.697e^-4	0.629	INTERGENIC
2R	11976344	2R_11976344_SNP [dm3] 2R_16088839_SNP [dm6]	T	A	1.701e^-4	0.629	INTRON Dg
3R	10814069	3R_10814069_SNP [dm3] 3R_14988347_SNP [dm6]	A	G	1.705e^-4	0.629	INTERGENIC
2R	3373646	2R_3373646_SNP [dm3] 2R_7486141_SNP [dm6]	A	G	1.707e^-4	0.629	UTR_5_PRIME wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2256598	2L_2256598_SNP [dm3] 2L_2256598_SNP [dm6]	T	A	1.709e^-4	0.629	INTERGENIC
2L	9398349	2L_9398349_SNP [dm3] 2L_9398349_SNP [dm6]	G	C	1.710e^-4	0.629	UPSTREAM CG4438 INTRON Shawl
2R	7476157	2R_7476157_SNP [dm3] 2R_11588652_SNP [dm6]	A	T	1.718e^-4	0.63	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
2R	9597551	2R_9597551_SNP [dm3] 2R_13710046_SNP [dm6]	C	G	1.719e^-4	0.63	INTRON fas
2L	7716270	2L_7716270_SNP [dm3] 2L_7716270_SNP [dm6]	G	T	1.731e^-4	0.633	DOWNSTREAM CG13793 INTRON CG33296	TF binding site mE1_TFBS_inv
2R	9328571	2R_9328571_SNP [dm3] 2R_13441066_SNP [dm6]	A	T	1.737e^-4	0.634	NON_SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	9335414	2L_9335414_SNP [dm3] 2L_9335414_SNP [dm6]	C	T	1.748e^-4	0.637	INTRON Eaat1
X	21284128	X_21284128_DEL [dm3] X_21413101_DEL [dm6]	TA	T	1.760e^-4	0.64	INTERGENIC
2R	4511504	2R_4511504_SNP [dm3] 2R_8623999_SNP [dm6]	T	G	1.765e^-4	0.64	UTR_3_PRIME Cirl
X	12663420	X_12663420_SNP [dm3] X_12769387_SNP [dm6]	T	C	1.774e^-4	0.641	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
2L	2540267	2L_2540267_SNP [dm3] 2L_2540267_SNP [dm6]	G	A	1.781e^-4	0.641	INTERGENIC
2R	10162331	2R_10162331_SNP [dm3] 2R_14274826_SNP [dm6]	G	A	1.789e^-4	0.641	NON_SYNONYMOUS_CODING conv	TF binding site BDTNP1_TFBS_twi
2L	1240856	2L_1240856_SNP [dm3] 2L_1240856_SNP [dm6]	C	G	1.790e^-4	0.641	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	3320799	2L_3320799_DEL [dm3] 2L_3320799_DEL [dm6]	TT	T	1.792e^-4	0.641	SPLICE_SITE_REGION CG8837 UPSTREAM CG3326 INTRON CG8837
2R	10172071	2R_10172071_SNP [dm3] 2R_14284566_SNP [dm6]	T	C	1.795e^-4	0.641	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9009685	2L_9009685_SNP [dm3] 2L_9009685_SNP [dm6]	A	G	1.808e^-4	0.641	UPSTREAM CG9568 INTERGENIC
X	17253261	X_17253261_SNP [dm3] X_17359228_SNP [dm6]	A	C	1.808e^-4	0.641	INTERGENIC
2L	13154467	2L_13154467_SNP [dm3] 2L_13154467_SNP [dm6]	G	A	1.809e^-4	0.641	INTERGENIC
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	1.809e^-4	0.641	INTRON CG32479
3L	3001348	3L_3001348_SNP [dm3] 3L_3001348_SNP [dm6]	C	T	1.810e^-4	0.641	UPSTREAM FMRFaR INTERGENIC
3L	3228280	3L_3228280_SNP [dm3] 3L_3228280_SNP [dm6]	T	C	1.810e^-4	0.641	SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad
X	4961916	X_4961916_SNP [dm3] X_5067883_SNP [dm6]	A	G	1.810e^-4	0.641	INTRON ovo	TF binding site mE1_TFBS_chinmo
2L	717605	2L_717605_SNP [dm3] 2L_717605_SNP [dm6]	G	A	1.818e^-4	0.642	INTERGENIC
3R	23979689	3R_23979689_INS [dm3] 3R_28153967_INS [dm6]	A	AA	1.826e^-4	0.644	INTRON CG34354
2R	5638727	2R_5638727_SNP [dm3] 2R_9751222_SNP [dm6]	A	G	1.850e^-4	0.65	INTERGENIC
2R	13095963	2R_13095963_SNP [dm3] 2R_17208458_SNP [dm6]	T	G	1.851e^-4	0.65	INTERGENIC
2R	13675060	2R_13675060_SNP [dm3] 2R_17787555_SNP [dm6]	A	G	1.861e^-4	0.652	SYNONYMOUS_CODING aft DOWNSTREAM UbcD10	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17250812	X_17250812_SNP [dm3] X_17356779_SNP [dm6]	A	G	1.865e^-4	0.653	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18382525	2R_18382525_SNP [dm3] 2R_22495020_SNP [dm6]	C	T	1.870e^-4	0.653	UTR_3_PRIME px DOWNSTREAM CG4610
2R	10161721	2R_10161721_SNP [dm3] 2R_14274216_SNP [dm6]	G	T	1.875e^-4	0.653	SYNONYMOUS_CODING conv
X	3277717	X_3277717_SNP [dm3] X_3383684_SNP [dm6]	C	A	1.877e^-4	0.653	INTRON dm & 1 other
2R	11328080	2R_11328080_SNP [dm3] 2R_15440575_SNP [dm6]	C	T	1.884e^-4	0.653	INTRON CG43729
2R	15595811	2R_15595811_SNP [dm3] 2R_19708306_SNP [dm6]	C	A	1.885e^-4	0.653	INTERGENIC
2R	6858494	2R_6858494_SNP [dm3] 2R_10970989_SNP [dm6]	T	A	1.902e^-4	0.654	INTERGENIC
2R	10104301	2R_10104301_SNP [dm3] 2R_14216796_SNP [dm6]	T	C	1.903e^-4	0.654	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	11434063	3L_11434063_SNP [dm3] 3L_11440963_SNP [dm6]	A	G	1.904e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13710290	3R_13710290_SNP [dm3] 3R_17884568_SNP [dm6]	A	G	1.906e^-4	0.654	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1453459	3L_1453459_SNP [dm3] 3L_1453459_SNP [dm6]	A	T	1.915e^-4	0.654	INTRON Ptp61F
2L	2394693	2L_2394693_SNP [dm3] 2L_2394693_SNP [dm6]	T	C	1.923e^-4	0.654	INTRON VGlut
X	17253376	X_17253376_DEL [dm3] X_17359343_DEL [dm6]	ACTGAAAGCTA...	A	1.929e^-4	0.654	INTERGENIC
2R	11342690	2R_11342690_SNP [dm3] 2R_15455185_SNP [dm6]	C	A	1.935e^-4	0.654	INTRON CG43729
X	12262403	X_12262403_SNP [dm3] X_12368370_SNP [dm6]	G	C	1.943e^-4	0.654	INTERGENIC
2R	16287881	2R_16287881_SNP [dm3] 2R_20400376_SNP [dm6]	G	A	1.948e^-4	0.654	INTERGENIC
2L	13501874	2L_13501874_SNP [dm3] 2L_13501874_SNP [dm6]	G	T	1.948e^-4	0.654	UTR_3_PRIME B4 DOWNSTREAM B4
X	13697939	X_13697939_SNP [dm3] X_13803906_SNP [dm6]	C	T	1.950e^-4	0.654	SPLICE_SITE_REGION inaE INTRON inaE	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23973121	3R_23973121_SNP [dm3] 3R_28147399_SNP [dm6]	A	G	1.951e^-4	0.654	INTRON CG34354
X	20949099	X_20949099_SNP [dm3] X_21078072_SNP [dm6]	G	T	1.954e^-4	0.654	UTR_3_PRIME bves INTRON bves
3L	16450844	3L_16450844_SNP [dm3] 3L_16457744_SNP [dm6]	C	A	1.955e^-4	0.654	INTRON CG33158
2R	10763630	2R_10763630_SNP [dm3] 2R_14876125_SNP [dm6]	G	C	1.962e^-4	0.654	NON_SYNONYMOUS_CODING Cyp6a23 DOWNSTREAM Cyp6a17
2R	14222128	2R_14222128_SNP [dm3] 2R_18334623_SNP [dm6]	T	A	1.966e^-4	0.654	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7463873	2R_7463873_SNP [dm3] 2R_11576368_SNP [dm6]	G	T	1.971e^-4	0.654	INTERGENIC
2R	7314269	2R_7314269_SNP [dm3] 2R_11426764_SNP [dm6]	T	A	1.975e^-4	0.654	INTRON Drip
2R	11100035	2R_11100035_SNP [dm3] 2R_15212530_SNP [dm6]	A	G	1.975e^-4	0.654	SYNONYMOUS_CODING row
X	17256743	X_17256743_SNP [dm3] X_17362710_SNP [dm6]	G	A	1.983e^-4	0.654	INTERGENIC
2L	530106	2L_530106_SNP [dm3] 2L_530106_SNP [dm6]	A	C	1.988e^-4	0.654	INTRON ush	regulatory region REDfly_CRMs
2R	9632088	2R_9632088_INS [dm3] 2R_13744583_INS [dm6]	T	TT	1.991e^-4	0.654	INTRON fas
3L	17166836	3L_17166836_SNP [dm3] 3L_17173736_SNP [dm6]	A	T	1.996e^-4	0.654	INTRON Rbp6
X	10918144	X_10918144_SNP [dm3] X_11024111_SNP [dm6]	A	G	2.004e^-4	0.654	INTRON CG42339
X	13839273	X_13839273_SNP [dm3] X_13945240_SNP [dm6]	A	G	2.004e^-4	0.654	INTRON mamo
2L	3320269	2L_3320269_SNP [dm3] 2L_3320269_SNP [dm6]	A	G	2.006e^-4	0.654	UTR_5_PRIME CG8837 UPSTREAM CG3326	TF binding site mE1_TFBS_HSA
2L	6818461	2L_6818461_SNP [dm3] 2L_6818461_SNP [dm6]	T	A	2.008e^-4	0.654	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8837503	2R_8837503_SNP [dm3] 2R_12949998_SNP [dm6]	G	A	2.011e^-4	0.654	SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18875427	X_18875427_SNP [dm3] X_18981394_SNP [dm6]	T	A	2.013e^-4	0.654	INTRON CG43759
2R	15595908	2R_15595908_SNP [dm3] 2R_19708403_SNP [dm6]	A	C	2.015e^-4	0.654	INTERGENIC
3R	17717223	3R_17717223_SNP [dm3] 3R_21891501_SNP [dm6]	G	A	2.016e^-4	0.654	INTRON CG6678
2L	9883451	2L_9883451_SNP [dm3] 2L_9883451_SNP [dm6]	G	C	2.019e^-4	0.654	INTRON nAChRalpha6
2R	3507190	2R_3507190_SNP [dm3] 2R_7619685_SNP [dm6]	C	A	2.023e^-4	0.654	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3L	5909643	3L_5909643_SNP [dm3] 3L_5916543_SNP [dm6]	T	C	2.024e^-4	0.654	INTRON CG13288
2L	7953836	2L_7953836_SNP [dm3] 2L_7953836_SNP [dm6]	G	T	2.025e^-4	0.654	INTRON Snoo
2R	8631526	2R_8631526_INS [dm3] 2R_12744021_INS [dm6]	G	GG	2.027e^-4	0.654	INTRON CG42663	TF binding site mE1_TFBS_Trl
2L	3453194	2L_3453194_SNP [dm3] 2L_3453194_SNP [dm6]	G	A	2.028e^-4	0.654	SYNONYMOUS_CODING CG12795 DOWNSTREAM Cog3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12339547	2L_12339547_SNP [dm3] 2L_12339547_SNP [dm6]	G	A	2.028e^-4	0.654	DOWNSTREAM CG31862 INTERGENIC
3L	9896979	3L_9896979_SNP [dm3] 3L_9903879_SNP [dm6]	A	C	2.036e^-4	0.654	DOWNSTREAM nudE INTERGENIC
2R	19171979	2R_19171979_SNP [dm3] 2R_23284456_SNP [dm6]	C	T	2.038e^-4	0.654	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
2L	8998724	2L_8998724_SNP [dm3] 2L_8998724_SNP [dm6]	G	C	2.044e^-4	0.654	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11108166	2R_11108166_SNP [dm3] 2R_15220661_SNP [dm6]	C	G	2.044e^-4	0.654	UPSTREAM Hex-C INTRON CG8079
2R	11108636	2R_11108636_SNP [dm3] 2R_15221131_SNP [dm6]	A	T	2.044e^-4	0.654	UPSTREAM Hex-C INTRON CG8079
2L	11298024	2L_11298024_SNP [dm3] 2L_11298024_SNP [dm6]	C	T	2.053e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14024181	2R_14024181_SNP [dm3] 2R_18136676_SNP [dm6]	C	G	2.054e^-4	0.654	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18979529	2R_18979529_SNP [dm3] 2R_23092006_SNP [dm6]	G	A	2.056e^-4	0.654	INTRON CG9876
3L	14235900	3L_14235900_SNP [dm3] 3L_14242800_SNP [dm6]	A	C	2.057e^-4	0.654	INTERGENIC
2L	8249805	2L_8249805_SNP [dm3] 2L_8249805_SNP [dm6]	C	A	2.058e^-4	0.654	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	16907273	X_16907273_SNP [dm3] X_17013240_SNP [dm6]	C	A	2.067e^-4	0.655	INTRON CG45002
2R	12089329	2R_12089329_SNP [dm3] 2R_16201824_SNP [dm6]	G	C	2.074e^-4	0.655	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	12089338	2R_12089338_SNP [dm3] 2R_16201833_SNP [dm6]	G	A	2.074e^-4	0.655	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	12035599	2R_12035599_SNP [dm3] 2R_16148094_SNP [dm6]	G	T	2.075e^-4	0.655	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
3L	11037676	3L_11037676_SNP [dm3] 3L_11044576_SNP [dm6]	C	T	2.085e^-4	0.656	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	17060244	2L_17060244_SNP [dm3] 2L_17060244_SNP [dm6]	C	A	2.086e^-4	0.656	INTERGENIC
X	21284509	X_21284509_SNP [dm3] X_21413482_SNP [dm6]	T	C	2.090e^-4	0.657	INTERGENIC
3L	14615543	3L_14615543_SNP [dm3] 3L_14622443_SNP [dm6]	C	T	2.116e^-4	0.66	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	13501861	2L_13501861_SNP [dm3] 2L_13501861_SNP [dm6]	A	T	2.124e^-4	0.66	UTR_3_PRIME B4 DOWNSTREAM B4
2L	9620828	2L_9620828_SNP [dm3] 2L_9620828_SNP [dm6]	C	A	2.124e^-4	0.66	INTRON GlcAT-S
3L	11617011	3L_11617011_SNP [dm3] 3L_11623911_SNP [dm6]	A	G	2.125e^-4	0.66	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	11385683	2R_11385683_SNP [dm3] 2R_15498178_SNP [dm6]	A	G	2.126e^-4	0.66	UPSTREAM CG12964 INTERGENIC
2L	2844914	2L_2844914_SNP [dm3] 2L_2844914_SNP [dm6]	G	A	2.127e^-4	0.66	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	2.130e^-4	0.66	INTRON dpr3
2L	4079400	2L_4079400_SNP [dm3] 2L_4079400_SNP [dm6]	C	T	2.132e^-4	0.66	INTRON ed
3L	14606021	3L_14606021_SNP [dm3] 3L_14612921_SNP [dm6]	G	C	2.133e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10532301	2R_10532301_SNP [dm3] 2R_14644796_SNP [dm6]	T	A	2.141e^-4	0.66	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13345878	3L_13345878_SNP [dm3] 3L_13352778_SNP [dm6]	A	G	2.147e^-4	0.66	INTRON CG17687
2L	2491441	2L_2491441_SNP [dm3] 2L_2491441_SNP [dm6]	T	C	2.160e^-4	0.66	SPLICE_SITE_REGION Slh SYNONYMOUS_CODING Slh	enhancer FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13264638	2L_13264638_SNP [dm3] 2L_13264638_SNP [dm6]	A	T	2.161e^-4	0.66	DOWNSTREAM CG31848 INTRON CG44085
2R	14769566	2R_14769566_SNP [dm3] 2R_18882061_SNP [dm6]	T	A	2.163e^-4	0.66	INTRON sano
2R	19048201	2R_19048201_SNP [dm3] 2R_23160678_SNP [dm6]	T	A	2.164e^-4	0.66	INTRON CG9899
X	21217566	X_21217566_SNP [dm3] X_21346539_SNP [dm6]	G	T	2.165e^-4	0.66	UTR_3_PRIME dod & 1 other
3R	17004527	3R_17004527_SNP [dm3] 3R_21178805_SNP [dm6]	G	A	2.165e^-4	0.66	SYNONYMOUS_CODING SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19957318	3L_19957318_SNP [dm3] 3L_19964218_SNP [dm6]	A	T	2.170e^-4	0.66	INTRON Ac76E
3L	15658348	3L_15658348_SNP [dm3] 3L_15665248_SNP [dm6]	C	A	2.172e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2601799	2L_2601799_SNP [dm3] 2L_2601799_SNP [dm6]	T	G	2.172e^-4	0.66	UPSTREAM CR44789 INTERGENIC
2R	14025675	2R_14025675_SNP [dm3] 2R_18138170_SNP [dm6]	T	C	2.181e^-4	0.66	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11891742	2R_11891742_SNP [dm3] 2R_16004237_SNP [dm6]	A	G	2.182e^-4	0.66	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	562885	2L_562885_SNP [dm3] 2L_562885_SNP [dm6]	G	C	2.182e^-4	0.66	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	17824035	3R_17824035_SNP [dm3] 3R_21998313_SNP [dm6]	A	G	2.185e^-4	0.66	INTRON Eip93F
3L	14615412	3L_14615412_SNP [dm3] 3L_14622312_SNP [dm6]	G	A	2.190e^-4	0.66	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	6322166	2L_6322166_SNP [dm3] 2L_6322166_SNP [dm6]	C	T	2.193e^-4	0.66	UTR_3_PRIME Ddr
2L	3398715	2L_3398715_SNP [dm3] 2L_3398715_SNP [dm6]	G	T	2.196e^-4	0.66	UPSTREAM CR44792 DOWNSTREAM CG34175 INTERGENIC
X	14262921	X_14262921_SNP [dm3] X_14368888_SNP [dm6]	A	C	2.203e^-4	0.66	INTRON dpr8
2R	14014983	2R_14014983_SNP [dm3] 2R_18127478_SNP [dm6]	T	A	2.204e^-4	0.66	INTRON Spn55B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	2584020	2L_2584020_SNP [dm3] 2L_2584020_SNP [dm6]	C	A	2.210e^-4	0.661	SYNONYMOUS_CODING Drp1	TF binding site mE1_TFBS_chinmo
3L	14852491	3L_14852491_SNP [dm3] 3L_14859391_SNP [dm6]	C	A	2.214e^-4	0.661	INTRON CG17839
3L	8911315	3L_8911315_SNP [dm3] 3L_8918215_SNP [dm6]	G	A	2.216e^-4	0.661	INTRON Tsp66E
3R	15955592	3R_15955592_SNP [dm3] 3R_20129870_SNP [dm6]	C	T	2.221e^-4	0.661	INTERGENIC
3R	4340074	3R_4340074_SNP [dm3] 3R_8514352_SNP [dm6]	T	C	2.223e^-4	0.661	INTERGENIC
2L	6756442	2L_6756442_SNP [dm3] 2L_6756442_SNP [dm6]	A	G	2.238e^-4	0.663	DOWNSTREAM CG11221 INTERGENIC
2R	10160806	2R_10160806_SNP [dm3] 2R_14273301_SNP [dm6]	C	T	2.240e^-4	0.663	NON_SYNONYMOUS_CODING conv
2L	1338073	2L_1338073_SNP [dm3] 2L_1338073_SNP [dm6]	C	T	2.244e^-4	0.663	INTERGENIC
3L	13345821	3L_13345821_SNP [dm3] 3L_13352721_SNP [dm6]	C	T	2.248e^-4	0.663	SYNONYMOUS_CODING CG17687
2L	5453268	2L_5453268_SNP [dm3] 2L_5453268_SNP [dm6]	G	A	2.250e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14615521	3L_14615521_SNP [dm3] 3L_14622421_SNP [dm6]	G	T	2.253e^-4	0.663	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	10156804	2R_10156804_SNP [dm3] 2R_14269299_SNP [dm6]	A	G	2.256e^-4	0.663	SYNONYMOUS_CODING SelD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	9361999	2L_9361999_SNP [dm3] 2L_9361999_SNP [dm6]	A	T	2.259e^-4	0.663	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11586358	2R_11586358_SNP [dm3] 2R_15698853_SNP [dm6]	C	T	2.279e^-4	0.667	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19171301	2R_19171301_SNP [dm3] 2R_23283778_SNP [dm6]	G	A	2.291e^-4	0.667	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
2R	15254400	2R_15254400_SNP [dm3] 2R_19366895_SNP [dm6]	T	C	2.294e^-4	0.667	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
3L	11616986	3L_11616986_SNP [dm3] 3L_11623886_SNP [dm6]	T	A	2.299e^-4	0.667	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	15459856	2L_15459856_SNP [dm3] 2L_15459856_SNP [dm6]	G	C	2.302e^-4	0.667	INTERGENIC
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	2.307e^-4	0.667	INTRON CG44422
2L	4582279	2L_4582279_SNP [dm3] 2L_4582279_SNP [dm6]	A	T	2.315e^-4	0.667	INTRON dp EXON CR43716
2L	9378469	2L_9378469_SNP [dm3] 2L_9378469_SNP [dm6]	A	T	2.315e^-4	0.667	INTRON Shawl
3L	20200249	3L_20200249_SNP [dm3] 3L_20207149_SNP [dm6]	A	C	2.315e^-4	0.667	UPSTREAM CG6996 INTERGENIC
3R	25403380	3R_25403380_SNP [dm3] 3R_29577658_SNP [dm6]	T	A	2.317e^-4	0.667	INTERGENIC
2R	14535206	2R_14535206_SNP [dm3] 2R_18647701_SNP [dm6]	C	G	2.323e^-4	0.667	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2L	1891774	2L_1891774_SNP [dm3] 2L_1891774_SNP [dm6]	T	A	2.326e^-4	0.667	INTRON CG7337
2L	6842243	2L_6842243_SNP [dm3] 2L_6842243_SNP [dm6]	G	A	2.331e^-4	0.667	INTERGENIC
3L	11616946	3L_11616946_SNP [dm3] 3L_11623846_SNP [dm6]	C	A	2.333e^-4	0.667	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	2.336e^-4	0.667	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11586359	2R_11586359_DEL [dm3] 2R_15698854_DEL [dm6]	ATTAACATTATTAACATATA...	A	2.341e^-4	0.667	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13439164	3L_13439164_SNP [dm3] 3L_13446064_SNP [dm6]	G	A	2.341e^-4	0.667	SYNONYMOUS_CODING CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13346061	3L_13346061_SNP [dm3] 3L_13352961_SNP [dm6]	A	C	2.341e^-4	0.667	SYNONYMOUS_CODING CG17687
2L	1228336	2L_1228336_SNP [dm3] 2L_1228336_SNP [dm6]	A	C	2.342e^-4	0.667	SYNONYMOUS_CODING CG42329
2R	9643029	2R_9643029_SNP [dm3] 2R_13755524_SNP [dm6]	G	A	2.348e^-4	0.667	NON_SYNONYMOUS_CODING CG6280
2R	10588650	2R_10588650_SNP [dm3] 2R_14701145_SNP [dm6]	A	T	2.357e^-4	0.667	INTRON mspo
2R	13656957	2R_13656957_SNP [dm3] 2R_17769452_SNP [dm6]	A	G	2.357e^-4	0.667	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14513507	2R_14513507_SNP [dm3] 2R_18626002_SNP [dm6]	G	T	2.357e^-4	0.667	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
2L	2406902	2L_2406902_SNP [dm3] 2L_2406902_SNP [dm6]	T	A	2.362e^-4	0.667	INTRON VGlut
2L	5150501	2L_5150501_SNP [dm3] 2L_5150501_SNP [dm6]	C	G	2.365e^-4	0.667	INTRON Msp300
2R	3531396	2R_3531396_SNP [dm3] 2R_7643891_SNP [dm6]	G	A	2.365e^-4	0.667	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	18290193	3L_18290193_DEL [dm3] 3L_18297093_DEL [dm6]	TG	T	2.373e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	20392014	3L_20392014_SNP [dm3] 3L_20398914_SNP [dm6]	A	G	2.379e^-4	0.669	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18985255	2R_18985255_SNP [dm3] 2R_23097732_SNP [dm6]	T	G	2.392e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	17731375	2R_17731375_SNP [dm3] 2R_21843870_SNP [dm6]	A	G	2.392e^-4	0.669	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10585346	2R_10585346_SNP [dm3] 2R_14697841_SNP [dm6]	C	T	2.392e^-4	0.669	INTRON mspo
2L	2593870	2L_2593870_SNP [dm3] 2L_2593870_SNP [dm6]	A	G	2.393e^-4	0.669	INTERGENIC
3L	11752277	3L_11752277_SNP [dm3] 3L_11759177_SNP [dm6]	C	A	2.404e^-4	0.669	INTRON CG6024
3L	8850369	3L_8850369_SNP [dm3] 3L_8857269_SNP [dm6]	C	A	2.404e^-4	0.669	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16292783	2L_16292783_SNP [dm3] 2L_16292783_SNP [dm6]	A	G	2.404e^-4	0.669	DOWNSTREAM CG17329 & 1 other INTRON CG13258	TF binding site mE1_TFBS_inv
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	2.415e^-4	0.67	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	19908899	2L_19908899_DEL [dm3] 2L_19908899_DEL [dm6]	TCATT	T	2.418e^-4	0.67	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	10676788	2R_10676788_SNP [dm3] 2R_14789283_SNP [dm6]	C	T	2.423e^-4	0.67	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	12011813	2R_12011813_SNP [dm3] 2R_16124308_SNP [dm6]	T	A	2.423e^-4	0.67	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
X	17678575	X_17678575_SNP [dm3] X_17784542_SNP [dm6]	C	T	2.427e^-4	0.67	INTERGENIC
3L	13977705	3L_13977705_SNP [dm3] 3L_13984605_SNP [dm6]	C	T	2.442e^-4	0.672	INTRON CG17364
2R	17819196	2R_17819196_SNP [dm3] 2R_21931691_SNP [dm6]	T	A	2.444e^-4	0.672	INTRON Fili
2R	11189884	2R_11189884_SNP [dm3] 2R_15302379_SNP [dm6]	A	C	2.454e^-4	0.672	INTRON Trpm
3L	6522094	3L_6522094_SNP [dm3] 3L_6528994_SNP [dm6]	A	G	2.457e^-4	0.672	INTRON sfl
2R	7468307	2R_7468307_SNP [dm3] 2R_11580802_SNP [dm6]	C	T	2.460e^-4	0.672	SYNONYMOUS_CODING tou UTR_5_PRIME tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5896429	3L_5896429_SNP [dm3] 3L_5903329_SNP [dm6]	C	T	2.467e^-4	0.672	SYNONYMOUS_CODING CG32413 UPSTREAM QC DOWNSTREAM CG10486
2R	9660586	2R_9660586_DEL [dm3] 2R_13773081_DEL [dm6]	ATA	A	2.471e^-4	0.672	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
X	18212348	X_18212348_SNP [dm3] X_18318315_SNP [dm6]	G	A	2.484e^-4	0.672	INTRON CG6023
2L	20944073	2L_20944073_SNP [dm3] 2L_20944073_SNP [dm6]	G	T	2.489e^-4	0.672	INTERGENIC
3L	12127177	3L_12127177_SNP [dm3] 3L_12134077_SNP [dm6]	C	T	2.491e^-4	0.672	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2R	16049980	2R_16049980_SNP [dm3] 2R_20162475_SNP [dm6]	C	T	2.491e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14852479	3L_14852479_SNP [dm3] 3L_14859379_SNP [dm6]	C	T	2.501e^-4	0.672	INTRON CG17839
2L	6758291	2L_6758291_SNP [dm3] 2L_6758291_SNP [dm6]	C	T	2.502e^-4	0.672	NON_SYNONYMOUS_CODING CG11322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3394393	2L_3394393_SNP [dm3] 2L_3394393_SNP [dm6]	G	C	2.503e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_inv
X	22194215	X_22194215_SNP [dm3] X_22792379_SNP [dm6]	G	T	2.505e^-4	0.672	INTRON CR44997
2R	19171362	2R_19171362_SNP [dm3] 2R_23283839_SNP [dm6]	A	C	2.509e^-4	0.672	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
2R	10160983	2R_10160983_SNP [dm3] 2R_14273478_SNP [dm6]	C	G	2.515e^-4	0.672	INTRON conv
3R	25440013	3R_25440013_SNP [dm3] 3R_29614291_SNP [dm6]	G	T	2.520e^-4	0.672	INTRON alph
3L	11617072	3L_11617072_SNP [dm3] 3L_11623972_SNP [dm6]	A	C	2.521e^-4	0.672	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	14615386	3L_14615386_SNP [dm3] 3L_14622286_SNP [dm6]	A	T	2.528e^-4	0.672	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	18051240	2R_18051240_MNP [dm3] 2R_22163735_MNP [dm6]	ACTAA	TGGTT	2.530e^-4	0.672	UTR_3_PRIME CG34206 DOWNSTREAM CG34206 INTRON a INTRAGENIC CG34206	TF binding site mE1_TFBS_cad
3L	9896929	3L_9896929_SNP [dm3] 3L_9903829_SNP [dm6]	A	G	2.532e^-4	0.672	DOWNSTREAM nudE INTERGENIC
2R	10676777	2R_10676777_SNP [dm3] 2R_14789272_SNP [dm6]	C	T	2.544e^-4	0.672	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	18244547	3L_18244547_SNP [dm3] 3L_18251447_SNP [dm6]	G	A	2.547e^-4	0.672	UPSTREAM CheA75a INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3237441	3L_3237441_SNP [dm3] 3L_3237441_SNP [dm6]	C	T	2.549e^-4	0.672	SYNONYMOUS_CODING CG17746 DOWNSTREAM CG11505	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9621939	2L_9621939_SNP [dm3] 2L_9621939_SNP [dm6]	A	T	2.567e^-4	0.672	INTRON GlcAT-S
2L	10049401	2L_10049401_SNP [dm3] 2L_10049401_SNP [dm6]	G	T	2.568e^-4	0.672	UPSTREAM CG33301 INTERGENIC	TF binding site mE1_TFBS_cad
X	13911328	X_13911328_SNP [dm3] X_14017295_SNP [dm6]	T	C	2.569e^-4	0.672	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
2R	5228495	2R_5228495_SNP [dm3] 2R_9340990_SNP [dm6]	T	A	2.572e^-4	0.672	INTRON CG13954 & 1 other
3R	4204201	3R_4204201_SNP [dm3] 3R_8378479_SNP [dm6]	C	T	2.574e^-4	0.672	DOWNSTREAM CG45263 INTRON CG45263
3L	14615435	3L_14615435_INS [dm3] 3L_14622335_INS [dm6]	T	TCGTT	2.577e^-4	0.672	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	14230064	2R_14230064_SNP [dm3] 2R_18342559_SNP [dm6]	T	A	2.578e^-4	0.672	INTRON sbb
2R	18985660	2R_18985660_DEL [dm3] 2R_23098137_DEL [dm6]	CA	C	2.579e^-4	0.672	INTERGENIC
3R	13875586	3R_13875586_SNP [dm3] 3R_18049864_SNP [dm6]	T	A	2.581e^-4	0.672	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	733714	2L_733714_SNP [dm3] 2L_733714_SNP [dm6]	A	T	2.583e^-4	0.672	INTERGENIC
2L	12087352	2L_12087352_SNP [dm3] 2L_12087352_SNP [dm6]	C	T	2.584e^-4	0.672	DOWNSTREAM CR44592 EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	18479087	X_18479087_SNP [dm3] X_18585054_SNP [dm6]	T	A	2.591e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18730869	2L_18730869_INS [dm3] 2L_18730869_INS [dm6]	TC	CAGA	2.596e^-4	0.672	INTRON CG10348
2R	12311078	2R_12311078_SNP [dm3] 2R_16423573_SNP [dm6]	C	T	2.596e^-4	0.672	SYNONYMOUS_CODING Sema-2b
3L	9358023	3L_9358023_SNP [dm3] 3L_9364923_SNP [dm6]	A	T	2.605e^-4	0.672	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5895083	2L_5895083_SNP [dm3] 2L_5895083_SNP [dm6]	C	G	2.607e^-4	0.672	INTERGENIC
X	11282042	X_11282042_SNP [dm3] X_11388009_SNP [dm6]	T	C	2.610e^-4	0.672	SYNONYMOUS_CODING dlg1 INTRON dlg1
2R	10149860	2R_10149860_SNP [dm3] 2R_14262355_SNP [dm6]	A	T	2.616e^-4	0.672	INTRON CG8547
3L	8606519	3L_8606519_SNP [dm3] 3L_8613419_SNP [dm6]	C	T	2.616e^-4	0.672	INTRON CG6282
X	6679879	X_6679879_SNP [dm3] X_6785846_SNP [dm6]	G	A	2.618e^-4	0.672	INTRON C3G
2R	12089937	2R_12089937_SNP [dm3] 2R_16202432_SNP [dm6]	A	G	2.620e^-4	0.672	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8285001	2L_8285001_SNP [dm3] 2L_8285001_SNP [dm6]	T	A	2.622e^-4	0.672	INTRON Btk29A	TF binding site mE1_TFBS_inv
2R	11189885	2R_11189885_SNP [dm3] 2R_15302380_SNP [dm6]	A	C	2.625e^-4	0.672	INTRON Trpm
3L	7234565	3L_7234565_SNP [dm3] 3L_7241465_SNP [dm6]	T	A	2.629e^-4	0.672	UPSTREAM Neos & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15001190	2R_15001190_INS [dm3] 2R_19113685_INS [dm6]	A	AA	2.630e^-4	0.672	INTRON 5-HT1A
2R	17381198	2R_17381198_SNP [dm3] 2R_21493693_SNP [dm6]	C	T	2.636e^-4	0.672	INTRON Fkbp14	TF binding site BDTNP1_TFBS_sna
2R	10597410	2R_10597410_SNP [dm3] 2R_14709905_SNP [dm6]	A	T	2.639e^-4	0.672	INTRON mspo
X	17224474	X_17224474_SNP [dm3] X_17330441_SNP [dm6]	A	G	2.641e^-4	0.672	INTERGENIC
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	2.641e^-4	0.672	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6353781	3L_6353781_SNP [dm3] 3L_6360681_SNP [dm6]	G	T	2.644e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3229134	3L_3229134_SNP [dm3] 3L_3229134_SNP [dm6]	C	T	2.652e^-4	0.672	SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19920038	2L_19920038_SNP [dm3] 2L_19920038_SNP [dm6]	T	C	2.661e^-4	0.672	INTRON sick EXON CR43828
2L	13501845	2L_13501845_SNP [dm3] 2L_13501845_SNP [dm6]	C	T	2.669e^-4	0.672	UTR_3_PRIME B4 DOWNSTREAM B4
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	2.670e^-4	0.672	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
3L	6765310	3L_6765310_SNP [dm3] 3L_6772210_SNP [dm6]	G	A	2.676e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19908887	2L_19908887_SNP [dm3] 2L_19908887_SNP [dm6]	A	T	2.678e^-4	0.672	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	3453193	2L_3453193_SNP [dm3] 2L_3453193_SNP [dm6]	G	A	2.684e^-4	0.672	NON_SYNONYMOUS_CODING CG12795 DOWNSTREAM Cog3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11616995	3L_11616995_SNP [dm3] 3L_11623895_SNP [dm6]	C	T	2.686e^-4	0.672	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	7616220	3L_7616220_SNP [dm3] 3L_7623120_SNP [dm6]	A	T	2.689e^-4	0.672	INTRON CG33275	TF binding site BDTNP1_TFBS_dl
3L	9896988	3L_9896988_SNP [dm3] 3L_9903888_SNP [dm6]	G	A	2.689e^-4	0.672	DOWNSTREAM nudE INTERGENIC
2R	9591424	2R_9591424_SNP [dm3] 2R_13703919_SNP [dm6]	G	A	2.690e^-4	0.672	INTRON fas
2R	11740069	2R_11740069_SNP [dm3] 2R_15852564_SNP [dm6]	C	G	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740081	2R_11740081_DEL [dm3] 2R_15852576_DEL [dm6]	GAA	T	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740085	2R_11740085_SNP [dm3] 2R_15852580_SNP [dm6]	A	T	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740089	2R_11740089_INS [dm3] 2R_15852584_INS [dm6]	AC	TTA	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740096	2R_11740096_SNP [dm3] 2R_15852591_SNP [dm6]	T	C	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740118	2R_11740118_SNP [dm3] 2R_15852613_SNP [dm6]	C	G	2.697e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3266601	3L_3266601_SNP [dm3] 3L_3266601_SNP [dm6]	C	T	2.697e^-4	0.672	START_GAINED ckd UTR_5_PRIME ckd	TF binding site BDTNP1_TFBS_dl
2R	11740074	2R_11740074_SNP [dm3] 2R_15852569_SNP [dm6]	A	G	2.698e^-4	0.672	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14125143	3R_14125143_SNP [dm3] 3R_18299421_SNP [dm6]	G	C	2.705e^-4	0.673	UTR_5_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8638091	2R_8638091_SNP [dm3] 2R_12750586_SNP [dm6]	C	T	2.708e^-4	0.673	SYNONYMOUS_CODING CG42663 DOWNSTREAM mos	TF binding site mE1_TFBS_cad
3L	21140013	3L_21140013_SNP [dm3] 3L_21146913_SNP [dm6]	A	T	2.714e^-4	0.673	UPSTREAM Ac78C INTRON Ac78C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6860839	2R_6860839_SNP [dm3] 2R_10973334_SNP [dm6]	T	C	2.716e^-4	0.673	INTERGENIC
3L	5825854	3L_5825854_SNP [dm3] 3L_5832754_SNP [dm6]	A	G	2.719e^-4	0.673	INTRON vn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6668022	3R_6668022_SNP [dm3] 3R_10842300_SNP [dm6]	A	G	2.726e^-4	0.673	INTRON Cad86C	TF binding site mE1_TFBS_cad
3L	12326726	3L_12326726_SNP [dm3] 3L_12333626_SNP [dm6]	A	G	2.730e^-4	0.673	INTRON CG32105
2R	13302129	2R_13302129_INS [dm3] 2R_17414624_INS [dm6]	G	GGTGTTG	2.732e^-4	0.673	CODON_INSERTION cnk DOWNSTREAM Prosalpha5
3L	11317460	3L_11317460_SNP [dm3] 3L_11324360_SNP [dm6]	C	A	2.735e^-4	0.673	UPSTREAM CR44721 DOWNSTREAM CR44722 EXON CR44723	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	3521032	2R_3521032_SNP [dm3] 2R_7633527_SNP [dm6]	T	A	2.741e^-4	0.674	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	2.744e^-4	0.674	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17364852	2L_17364852_SNP [dm3] 2L_17364852_SNP [dm6]	T	C	2.751e^-4	0.674	DOWNSTREAM CG31804 INTERGENIC
2L	2555773	2L_2555773_SNP [dm3] 2L_2555773_SNP [dm6]	C	G	2.751e^-4	0.674	EXON CR44113
3L	10483822	3L_10483822_SNP [dm3] 3L_10490722_SNP [dm6]	A	T	2.760e^-4	0.675	UPSTREAM S-Lap4 INTRON A2bp1
2R	10517091	2R_10517091_SNP [dm3] 2R_14629586_SNP [dm6]	A	T	2.780e^-4	0.677	UPSTREAM CG10131 INTERGENIC
3L	11616979	3L_11616979_SNP [dm3] 3L_11623879_SNP [dm6]	G	T	2.782e^-4	0.677	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	10572638	2R_10572638_SNP [dm3] 2R_14685133_SNP [dm6]	A	G	2.783e^-4	0.677	INTRON mspo
2L	3440649	2L_3440649_SNP [dm3] 2L_3440649_SNP [dm6]	C	A	2.784e^-4	0.677	INTERGENIC
2R	4511520	2R_4511520_SNP [dm3] 2R_8624015_SNP [dm6]	T	G	2.805e^-4	0.678	UTR_3_PRIME Cirl
2L	6000885	2L_6000885_SNP [dm3] 2L_6000885_SNP [dm6]	T	C	2.808e^-4	0.678	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10832811	X_10832811_SNP [dm3] X_10938778_SNP [dm6]	A	C	2.809e^-4	0.678	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833107	X_10833107_SNP [dm3] X_10939074_SNP [dm6]	T	A	2.809e^-4	0.678	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833484	X_10833484_DEL [dm3] X_10939451_DEL [dm6]	TTAGAAAAACATGGCATGAA...	GTAAAATT	2.809e^-4	0.678	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2250969	X_2250969_SNP [dm3] X_2356936_SNP [dm6]	G	A	2.809e^-4	0.678	INTRON ptr
2R	14015281	2R_14015281_SNP [dm3] 2R_18127776_SNP [dm6]	C	T	2.818e^-4	0.679	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	562616	2L_562616_SNP [dm3] 2L_562616_SNP [dm6]	G	C	2.826e^-4	0.68	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	17901011	2R_17901011_SNP [dm3] 2R_22013506_SNP [dm6]	A	G	2.831e^-4	0.68	INTRON CG34370
3R	26287469	3R_26287469_SNP [dm3] 3R_30461747_SNP [dm6]	A	G	2.837e^-4	0.68	INTRON CDase	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26287494	3R_26287494_SNP [dm3] 3R_30461772_SNP [dm6]	G	T	2.837e^-4	0.68	INTRON CDase	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6693274	3L_6693274_SNP [dm3] 3L_6700174_SNP [dm6]	A	T	2.845e^-4	0.681	INTRON SP1173
X	17222818	X_17222818_SNP [dm3] X_17328785_SNP [dm6]	T	A	2.847e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12480330	3L_12480330_SNP [dm3] 3L_12487230_SNP [dm6]	T	C	2.849e^-4	0.681	NON_SYNONYMOUS_CODING CG10660 DOWNSTREAM CG33725	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15970388	X_15970388_SNP [dm3] X_16076355_SNP [dm6]	T	G	2.852e^-4	0.681	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	10155986	2R_10155986_SNP [dm3] 2R_14268481_SNP [dm6]	A	T	2.856e^-4	0.681	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9799208	3L_9799208_SNP [dm3] 3L_9806108_SNP [dm6]	T	A	2.862e^-4	0.681	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7372248	2L_7372248_SNP [dm3] 2L_7372248_SNP [dm6]	T	A	2.868e^-4	0.681	INTRON Wnt10	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10813212	2R_10813212_DEL [dm3] 2R_14925707_DEL [dm6]	AGCT	A	2.868e^-4	0.681	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18147247	3L_18147247_SNP [dm3] 3L_18154147_SNP [dm6]	C	T	2.870e^-4	0.681	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14230075	2R_14230075_SNP [dm3] 2R_18342570_SNP [dm6]	C	A	2.881e^-4	0.681	INTRON sbb
2R	7712274	2R_7712274_SNP [dm3] 2R_11824769_SNP [dm6]	G	A	2.884e^-4	0.681	UPSTREAM CG13192 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	6357796	2R_6357796_SNP [dm3] 2R_10470291_SNP [dm6]	C	T	2.885e^-4	0.681	SYNONYMOUS_CODING whd DOWNSTREAM CG11777	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	808457	3L_808457_SNP [dm3] 3L_808457_SNP [dm6]	A	G	2.895e^-4	0.682	INTERGENIC
3L	10594138	3L_10594138_SNP [dm3] 3L_10601038_SNP [dm6]	T	C	2.903e^-4	0.682	INTERGENIC
2R	16099065	2R_16099065_SNP [dm3] 2R_20211560_SNP [dm6]	A	G	2.910e^-4	0.682	DOWNSTREAM CG16894 INTERGENIC
2R	10104321	2R_10104321_DEL [dm3] 2R_14216816_DEL [dm6]	AA	A	2.911e^-4	0.682	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	2548075	3L_2548075_SNP [dm3] 3L_2548075_SNP [dm6]	C	T	2.915e^-4	0.682	INTRON Spn
2R	12985356	2R_12985356_SNP [dm3] 2R_17097851_SNP [dm6]	C	T	2.916e^-4	0.682	UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9063641	X_9063641_SNP [dm3] X_9169608_SNP [dm6]	T	C	2.919e^-4	0.682	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2R	10161334	2R_10161334_SNP [dm3] 2R_14273829_SNP [dm6]	A	C	2.927e^-4	0.682	SYNONYMOUS_CODING conv
2R	10163747	2R_10163747_SNP [dm3] 2R_14276242_SNP [dm6]	A	T	2.929e^-4	0.682	UTR_5_PRIME Ih DOWNSTREAM conv
3L	15429671	3L_15429671_SNP [dm3] 3L_15436571_SNP [dm6]	A	T	2.929e^-4	0.682	UPSTREAM CR43625 INTERGENIC
X	20005082	X_20005082_SNP [dm3] X_20111049_SNP [dm6]	T	C	2.932e^-4	0.682	UPSTREAM karr INTERGENIC	transposable element FlyBase
2R	10786021	2R_10786021_SNP [dm3] 2R_14898516_SNP [dm6]	C	T	2.938e^-4	0.682	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	12613390	3L_12613390_SNP [dm3] 3L_12620290_SNP [dm6]	A	G	2.941e^-4	0.682	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5575623	2L_5575623_SNP [dm3] 2L_5575623_SNP [dm6]	T	C	2.941e^-4	0.682	INTERGENIC
X	21217582	X_21217582_SNP [dm3] X_21346555_SNP [dm6]	A	T	2.943e^-4	0.682	UTR_3_PRIME dod & 1 other
2L	530108	2L_530108_SNP [dm3] 2L_530108_SNP [dm6]	T	C	2.946e^-4	0.682	INTRON ush	regulatory region REDfly_CRMs
X	10832482	X_10832482_SNP [dm3] X_10938449_SNP [dm6]	G	A	2.948e^-4	0.682	SPLICE_SITE_REGION Myo10A INTRON Myo10A	TF binding site mE1_TFBS_HSA
3L	3237361	3L_3237361_SNP [dm3] 3L_3237361_SNP [dm6]	T	C	2.952e^-4	0.682	NON_SYNONYMOUS_CODING CG17746 DOWNSTREAM CG11505	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18051350	2R_18051350_SNP [dm3] 2R_22163845_SNP [dm6]	A	T	2.954e^-4	0.682	NON_SYNONYMOUS_CODING CG34206 INTRON a
2R	11948429	2R_11948429_SNP [dm3] 2R_16060924_SNP [dm6]	T	G	2.974e^-4	0.683	DOWNSTREAM CG8405 INTERGENIC
2R	18051208	2R_18051208_SNP [dm3] 2R_22163703_SNP [dm6]	T	G	2.976e^-4	0.683	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	7315563	2R_7315563_SNP [dm3] 2R_11428058_SNP [dm6]	A	G	2.976e^-4	0.683	UPSTREAM Drip INTRON Drip
3L	5624999	3L_5624999_SNP [dm3] 3L_5631899_SNP [dm6]	T	A	2.980e^-4	0.683	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
2L	12339554	2L_12339554_SNP [dm3] 2L_12339554_SNP [dm6]	C	A	2.984e^-4	0.683	DOWNSTREAM CG31862 INTERGENIC
3L	17166824	3L_17166824_SNP [dm3] 3L_17173724_SNP [dm6]	G	T	2.987e^-4	0.683	INTRON Rbp6
2L	19912392	2L_19912392_DEL [dm3] 2L_19912392_DEL [dm6]	AA	A	2.991e^-4	0.683	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2L	3271901	2L_3271901_SNP [dm3] 2L_3271901_SNP [dm6]	G	A	2.995e^-4	0.683	DOWNSTREAM CG3347 INTERGENIC
3R	7014394	3R_7014394_SNP [dm3] 3R_11188672_SNP [dm6]	T	G	2.997e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6860795	2R_6860795_SNP [dm3] 2R_10973290_SNP [dm6]	G	A	3.009e^-4	0.683	INTERGENIC
2R	10786028	2R_10786028_SNP [dm3] 2R_14898523_SNP [dm6]	G	A	3.009e^-4	0.683	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11640834	3L_11640834_SNP [dm3] 3L_11647734_SNP [dm6]	C	T	3.009e^-4	0.683	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	9971949	2R_9971949_SNP [dm3] 2R_14084444_SNP [dm6]	A	C	3.012e^-4	0.683	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	12098105	2L_12098105_SNP [dm3] 2L_12098105_SNP [dm6]	A	G	3.012e^-4	0.683	DOWNSTREAM Mt2 INTRON Ced-12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	20226512	3L_20226512_SNP [dm3] 3L_20233412_SNP [dm6]	T	G	3.017e^-4	0.683	UTR_3_PRIME CG17233 DOWNSTREAM CG17233 & 1 other
2R	5797958	2R_5797958_SNP [dm3] 2R_9910453_SNP [dm6]	A	G	3.029e^-4	0.685	UTR_3_PRIME FMRFa UPSTREAM Etf-QO	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17181037	2R_17181037_SNP [dm3] 2R_21293532_SNP [dm6]	A	T	3.032e^-4	0.685	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2724588	2L_2724588_SNP [dm3] 2L_2724588_SNP [dm6]	G	T	3.036e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18984942	2R_18984942_SNP [dm3] 2R_23097419_SNP [dm6]	G	C	3.051e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	3.053e^-4	0.687	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2R	10188073	2R_10188073_SNP [dm3] 2R_14300568_SNP [dm6]	C	A	3.055e^-4	0.687	NON_SYNONYMOUS_CODING tej DOWNSTREAM Ih
3L	18147252	3L_18147252_SNP [dm3] 3L_18154152_SNP [dm6]	C	T	3.060e^-4	0.687	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3401629	2L_3401629_SNP [dm3] 2L_3401629_SNP [dm6]	T	G	3.063e^-4	0.687	INTERGENIC
2L	3986342	2L_3986342_SNP [dm3] 2L_3986342_SNP [dm6]	C	T	3.074e^-4	0.689	INTRON fred
3L	13439176	3L_13439176_SNP [dm3] 3L_13446076_SNP [dm6]	T	C	3.085e^-4	0.689	SYNONYMOUS_CODING CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16289921	2L_16289921_SNP [dm3] 2L_16289921_SNP [dm6]	T	C	3.087e^-4	0.689	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
2L	8674120	2L_8674120_SNP [dm3] 2L_8674120_SNP [dm6]	G	C	3.088e^-4	0.689	NON_SYNONYMOUS_CODING Glt	TF binding site mE1_TFBS_cad
X	5043616	X_5043616_SNP [dm3] X_5149583_SNP [dm6]	C	T	3.094e^-4	0.689	INTRON rg & 1 other
3L	18142771	3L_18142771_INS [dm3] 3L_18149671_INS [dm6]	A	AA	3.095e^-4	0.689	INTRON CG7330
2L	8275041	2L_8275041_SNP [dm3] 2L_8275041_SNP [dm6]	G	T	3.101e^-4	0.689	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10483888	3L_10483888_SNP [dm3] 3L_10490788_SNP [dm6]	A	G	3.108e^-4	0.689	UPSTREAM S-Lap4 INTRON A2bp1
2R	9589578	2R_9589578_SNP [dm3] 2R_13702073_SNP [dm6]	C	A	3.111e^-4	0.689	INTRON fas
3L	823602	3L_823602_SNP [dm3] 3L_823602_SNP [dm6]	G	T	3.112e^-4	0.689	INTERGENIC
2R	20093369	2R_20093369_SNP [dm3] 2R_24205846_SNP [dm6]	C	G	3.113e^-4	0.689	NON_SYNONYMOUS_CODING CG11406
2L	849404	2L_849404_SNP [dm3] 2L_849404_SNP [dm6]	T	A	3.116e^-4	0.689	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15253959	2R_15253959_SNP [dm3] 2R_19366454_SNP [dm6]	T	A	3.133e^-4	0.689	DOWNSTREAM CG9416 INTRON CG10051
2R	10163746	2R_10163746_SNP [dm3] 2R_14276241_SNP [dm6]	G	C	3.136e^-4	0.689	UTR_5_PRIME Ih DOWNSTREAM conv
2R	13650876	2R_13650876_SNP [dm3] 2R_17763371_SNP [dm6]	C	A	3.138e^-4	0.689	SYNONYMOUS_CODING CG5009
X	17224471	X_17224471_SNP [dm3] X_17330438_SNP [dm6]	A	G	3.143e^-4	0.689	INTERGENIC
X	16529504	X_16529504_SNP [dm3] X_16635471_SNP [dm6]	G	A	3.151e^-4	0.689	INTRON Rok
2R	12985937	2R_12985937_SNP [dm3] 2R_17098432_SNP [dm6]	T	C	3.152e^-4	0.689	UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	10674192	X_10674192_SNP [dm3] X_10780159_SNP [dm6]	G	A	3.155e^-4	0.689	DOWNSTREAM sesB INTRON Ant2
2L	6593870	2L_6593870_SNP [dm3] 2L_6593870_SNP [dm6]	G	A	3.156e^-4	0.689	INTRON CG11319
3L	17495772	3L_17495772_SNP [dm3] 3L_17502672_SNP [dm6]	T	A	3.157e^-4	0.689	INTRON Oatp74D
3L	15658324	3L_15658324_SNP [dm3] 3L_15665224_SNP [dm6]	T	G	3.162e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11134156	3L_11134156_SNP [dm3] 3L_11141056_SNP [dm6]	T	A	3.164e^-4	0.689	INTRON CG32082
2R	14222022	2R_14222022_SNP [dm3] 2R_18334517_SNP [dm6]	G	A	3.168e^-4	0.689	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12312699	3L_12312699_SNP [dm3] 3L_12319599_SNP [dm6]	G	C	3.170e^-4	0.689	INTERGENIC
X	6898800	X_6898800_SNP [dm3] X_7004767_SNP [dm6]	T	A	3.173e^-4	0.689	START_GAINED Inx7 UTR_5_PRIME Inx7 DOWNSTREAM Inx2
3L	10484158	3L_10484158_SNP [dm3] 3L_10491058_SNP [dm6]	A	T	3.173e^-4	0.689	UTR_5_PRIME S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad
3R	25403393	3R_25403393_SNP [dm3] 3R_29577671_SNP [dm6]	C	A	3.174e^-4	0.689	INTERGENIC
3L	20890733	3L_20890733_DEL [dm3] 3L_20897633_DEL [dm6]	CTGTT	C	3.183e^-4	0.689	UTR_5_PRIME CG43931 UPSTREAM Sfp77F
2R	11825976	2R_11825976_SNP [dm3] 2R_15938471_SNP [dm6]	C	G	3.189e^-4	0.689	NON_SYNONYMOUS_CODING Mlf	TF binding site mE1_TFBS_chinmo
2R	11740076	2R_11740076_SNP [dm3] 2R_15852571_SNP [dm6]	G	C	3.190e^-4	0.689	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7982903	2R_7982903_SNP [dm3] 2R_12095398_SNP [dm6]	T	C	3.193e^-4	0.689	INTRON jeb
2L	19921448	2L_19921448_SNP [dm3] 2L_19921448_SNP [dm6]	C	G	3.195e^-4	0.689	INTRON sick EXON CR43828
2L	3382879	2L_3382879_SNP [dm3] 2L_3382879_SNP [dm6]	A	T	3.197e^-4	0.689	INTERGENIC
2R	7464504	2R_7464504_SNP [dm3] 2R_11576999_SNP [dm6]	C	T	3.198e^-4	0.689	DOWNSTREAM tou INTERGENIC
2R	6866368	2R_6866368_SNP [dm3] 2R_10978863_SNP [dm6]	T	A	3.208e^-4	0.69	UTR_3_PRIME luna
3L	2284792	3L_2284792_SNP [dm3] 3L_2284792_SNP [dm6]	C	T	3.216e^-4	0.691	INTRON MsR2
3L	823614	3L_823614_SNP [dm3] 3L_823614_SNP [dm6]	A	C	3.221e^-4	0.691	INTERGENIC
2R	18382582	2R_18382582_SNP [dm3] 2R_22495077_SNP [dm6]	G	A	3.226e^-4	0.691	UTR_3_PRIME px DOWNSTREAM CG4610
2L	562602	2L_562602_SNP [dm3] 2L_562602_SNP [dm6]	T	A	3.228e^-4	0.691	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	14941292	2R_14941292_SNP [dm3] 2R_19053787_SNP [dm6]	G	A	3.241e^-4	0.692	INTERGENIC
3R	11964769	3R_11964769_DEL [dm3] 3R_16139047_DEL [dm6]	TTTGGCTGGAG...	T	3.245e^-4	0.692	INTRON Sb
3L	11617027	3L_11617027_INS [dm3] 3L_11623927_INS [dm6]	A	AGATTCT	3.260e^-4	0.692	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	3.261e^-4	0.692	DOWNSTREAM CR42844 INTERGENIC
2L	8390381	2L_8390381_SNP [dm3] 2L_8390381_SNP [dm6]	C	T	3.261e^-4	0.692	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10241404	2L_10241404_SNP [dm3] 2L_10241404_SNP [dm6]	G	A	3.270e^-4	0.692	SYNONYMOUS_CODING me31B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2321519	2L_2321519_DEL [dm3] 2L_2321519_DEL [dm6]	AA	A	3.276e^-4	0.692	INTRON CG9967 & 1 other
2R	12966884	2R_12966884_SNP [dm3] 2R_17079379_SNP [dm6]	T	C	3.278e^-4	0.692	INTRON CG30460
3R	25091474	3R_25091474_SNP [dm3] 3R_29265752_SNP [dm6]	T	C	3.279e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	596446	2L_596446_SNP [dm3] 2L_596446_SNP [dm6]	T	C	3.279e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	4516472	2L_4516472_SNP [dm3] 2L_4516472_SNP [dm6]	G	A	3.282e^-4	0.692	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11344121	2R_11344121_SNP [dm3] 2R_15456616_SNP [dm6]	C	T	3.282e^-4	0.692	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	8672132	2L_8672132_SNP [dm3] 2L_8672132_SNP [dm6]	T	C	3.283e^-4	0.692	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
3L	13345884	3L_13345884_SNP [dm3] 3L_13352784_SNP [dm6]	G	A	3.286e^-4	0.692	INTRON CG17687
3R	5643906	3R_5643906_SNP [dm3] 3R_9818184_SNP [dm6]	G	A	3.287e^-4	0.692	SYNONYMOUS_CODING CG9459 DOWNSTREAM CG9458
2R	19892775	2R_19892775_INS [dm3] 2R_24005252_INS [dm6]	T	TT	3.298e^-4	0.693	SPLICE_SITE_REGION Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4845583	2L_4845583_SNP [dm3] 2L_4845583_SNP [dm6]	G	A	3.299e^-4	0.693	SPLICE_SITE_REGION mxt INTRON mxt	TF binding site mE1_TFBS_chinmo
2R	13263982	2R_13263982_SNP [dm3] 2R_17376477_SNP [dm6]	T	A	3.301e^-4	0.693	UTR_3_PRIME mbl	TF binding site mE1_TFBS_kn
2L	1926843	2L_1926843_SNP [dm3] 2L_1926843_SNP [dm6]	C	G	3.309e^-4	0.693	UPSTREAM CG7337 INTRON CG7337
2L	915152	2L_915152_SNP [dm3] 2L_915152_SNP [dm6]	C	T	3.319e^-4	0.694	SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	13439033	3L_13439033_DEL [dm3] 3L_13445933_DEL [dm6]	TTACCAACTTT...	C	3.325e^-4	0.694	INTRON CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17985770	2R_17985770_SNP [dm3] 2R_22098265_SNP [dm6]	A	G	3.330e^-4	0.694	INTRON CG11073
2R	8122440	2R_8122440_SNP [dm3] 2R_12234935_SNP [dm6]	A	T	3.330e^-4	0.694	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	12877871	X_12877871_SNP [dm3] X_12983838_SNP [dm6]	T	G	3.334e^-4	0.694	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3657274	2L_3657274_SNP [dm3] 2L_3657274_SNP [dm6]	T	A	3.334e^-4	0.694	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
X	7806995	X_7806995_SNP [dm3] X_7912962_SNP [dm6]	A	G	3.335e^-4	0.694	SYNONYMOUS_CODING snz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7234157	3L_7234157_SNP [dm3] 3L_7241057_SNP [dm6]	T	C	3.340e^-4	0.694	UPSTREAM Neos DOWNSTREAM BHD INTRON RpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19182571	2L_19182571_INS [dm3] 2L_19182571_INS [dm6]	A	AATATTCTTTGTAGA...	3.347e^-4	0.694	UPSTREAM CG17568 DOWNSTREAM CR17567 INTRON CG42688
X	17207533	X_17207533_SNP [dm3] X_17313500_SNP [dm6]	G	A	3.350e^-4	0.694	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3228055	3L_3228055_SNP [dm3] 3L_3228055_SNP [dm6]	C	T	3.364e^-4	0.694	INTRON CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3898782	X_3898782_SNP [dm3] X_4004749_SNP [dm6]	T	G	3.367e^-4	0.694	INTERGENIC	insulator Insulator_Class_II.mE01
2R	9639936	2R_9639936_SNP [dm3] 2R_13752431_SNP [dm6]	A	G	3.369e^-4	0.694	INTERGENIC
3L	6213384	3L_6213384_SNP [dm3] 3L_6220284_SNP [dm6]	T	G	3.376e^-4	0.694	UPSTREAM pncr008:3L INTERGENIC
3L	3223981	3L_3223981_SNP [dm3] 3L_3223981_SNP [dm6]	G	A	3.379e^-4	0.694	UPSTREAM CG11505 INTRON CG17737	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	2347729	3L_2347729_SNP [dm3] 3L_2347729_SNP [dm6]	G	A	3.380e^-4	0.694	INTERGENIC
3L	10483893	3L_10483893_SNP [dm3] 3L_10490793_SNP [dm6]	T	C	3.387e^-4	0.694	UPSTREAM S-Lap4 INTRON A2bp1
2L	6594116	2L_6594116_SNP [dm3] 2L_6594116_SNP [dm6]	C	T	3.389e^-4	0.694	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
X	13661900	X_13661900_SNP [dm3] X_13767867_SNP [dm6]	G	A	3.392e^-4	0.694	UTR_5_PRIME rdgB
2L	3339568	2L_3339568_SNP [dm3] 2L_3339568_SNP [dm6]	A	G	3.396e^-4	0.694	INTRON E23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25403352	3R_25403352_SNP [dm3] 3R_29577630_SNP [dm6]	G	A	3.406e^-4	0.694	INTERGENIC
2L	6525314	2L_6525314_SNP [dm3] 2L_6525314_SNP [dm6]	A	C	3.409e^-4	0.694	INTRON CG31637
2R	9329257	2R_9329257_SNP [dm3] 2R_13441752_SNP [dm6]	A	C	3.411e^-4	0.694	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	19912387	2L_19912387_SNP [dm3] 2L_19912387_SNP [dm6]	T	A	3.416e^-4	0.694	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
X	6679937	X_6679937_SNP [dm3] X_6785904_SNP [dm6]	G	A	3.421e^-4	0.694	INTRON C3G
2L	14051736	2L_14051736_SNP [dm3] 2L_14051736_SNP [dm6]	G	A	3.437e^-4	0.694	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7829731	2L_7829731_SNP [dm3] 2L_7829731_SNP [dm6]	G	A	3.441e^-4	0.694	INTRON mts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11238302	3L_11238302_SNP [dm3] 3L_11245202_SNP [dm6]	A	T	3.441e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	10647273	2R_10647273_SNP [dm3] 2R_14759768_SNP [dm6]	G	A	3.442e^-4	0.694	UTR_3_PRIME Spred UPSTREAM CG12857
3L	15847168	3L_15847168_SNP [dm3] 3L_15854068_SNP [dm6]	A	G	3.447e^-4	0.694	INTRON pHCl
3R	13721261	3R_13721261_SNP [dm3] 3R_17895539_SNP [dm6]	G	A	3.461e^-4	0.694	INTRON Rim
3R	3570893	3R_3570893_SNP [dm3] 3R_7745171_SNP [dm6]	T	C	3.461e^-4	0.694	INTERGENIC
2R	7315676	2R_7315676_SNP [dm3] 2R_11428171_SNP [dm6]	G	C	3.465e^-4	0.694	UPSTREAM Drip INTRON Drip
2L	4271986	2L_4271986_SNP [dm3] 2L_4271986_SNP [dm6]	G	A	3.465e^-4	0.694	INTERGENIC
2R	9641226	2R_9641226_SNP [dm3] 2R_13753721_SNP [dm6]	A	C	3.466e^-4	0.694	UPSTREAM CG6280 INTERGENIC
2L	562984	2L_562984_SNP [dm3] 2L_562984_SNP [dm6]	C	T	3.467e^-4	0.694	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	21310434	2L_21310434_SNP [dm3] 2L_21310434_SNP [dm6]	C	A	3.470e^-4	0.694	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1228404	3L_1228404_SNP [dm3] 3L_1228404_SNP [dm6]	G	C	3.471e^-4	0.694	DOWNSTREAM LysS INTRON mwh
2L	714204	2L_714204_SNP [dm3] 2L_714204_SNP [dm6]	T	C	3.474e^-4	0.694	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7234802	3L_7234802_SNP [dm3] 3L_7241702_SNP [dm6]	T	C	3.476e^-4	0.694	UTR_5_PRIME Neos UPSTREAM Neos & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16055760	X_16055760_SNP [dm3] X_16161727_SNP [dm6]	G	T	3.477e^-4	0.694	INTERGENIC
3L	14852474	3L_14852474_INS [dm3] 3L_14859374_INS [dm6]	A	ATTAAGCTTAAGACGTTCCT...	3.495e^-4	0.694	INTRON CG17839
2R	10371677	2R_10371677_SNP [dm3] 2R_14484172_SNP [dm6]	G	T	3.496e^-4	0.694	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8717230	2R_8717230_INS [dm3] 2R_12829725_INS [dm6]	A	AGA	3.502e^-4	0.694	INTERGENIC
2L	1457482	2L_1457482_SNP [dm3] 2L_1457482_SNP [dm6]	A	G	3.503e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1900894	2L_1900894_SNP [dm3] 2L_1900894_SNP [dm6]	T	A	3.503e^-4	0.694	INTRON CG7337
2L	5451972	2L_5451972_SNP [dm3] 2L_5451972_SNP [dm6]	G	A	3.504e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
4	478845	4_478845_INS [dm3] 4_458219_INS [dm6]	T	TTTTTCCAAGACATACAT...	3.507e^-4	0.694	INTERGENIC	transposable element FlyBase
2R	18051401	2R_18051401_SNP [dm3] 2R_22163896_SNP [dm6]	A	T	3.509e^-4	0.694	SYNONYMOUS_CODING CG34206 INTRON a
X	5212856	X_5212856_SNP [dm3] X_5318823_SNP [dm6]	A	T	3.513e^-4	0.694	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
2R	12311066	2R_12311066_SNP [dm3] 2R_16423561_SNP [dm6]	C	T	3.526e^-4	0.694	SYNONYMOUS_CODING Sema-2b
X	12000184	X_12000184_SNP [dm3] X_12106151_SNP [dm6]	T	G	3.528e^-4	0.694	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3852722	2L_3852722_SNP [dm3] 2L_3852722_SNP [dm6]	G	T	3.530e^-4	0.694	DOWNSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	2263668	3L_2263668_SNP [dm3] 3L_2263668_SNP [dm6]	T	A	3.533e^-4	0.694	NON_SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3440503	2L_3440503_SNP [dm3] 2L_3440503_SNP [dm6]	A	T	3.546e^-4	0.694	INTERGENIC
2R	11749770	2R_11749770_SNP [dm3] 2R_15862265_SNP [dm6]	G	C	3.549e^-4	0.694	UPSTREAM Gpo-1 INTRON Gpo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
2L	15740230	2L_15740230_SNP [dm3] 2L_15740230_SNP [dm6]	G	A	3.553e^-4	0.694	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13721118	3R_13721118_DEL [dm3] 3R_17895396_DEL [dm6]	GTAAACAAATCTGTGGCAAA...	G	3.562e^-4	0.694	INTRON Rim
2L	1457317	2L_1457317_SNP [dm3] 2L_1457317_SNP [dm6]	G	A	3.563e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4079391	2L_4079391_SNP [dm3] 2L_4079391_SNP [dm6]	C	T	3.564e^-4	0.694	INTRON ed
2R	12520175	2R_12520175_SNP [dm3] 2R_16632670_SNP [dm6]	A	G	3.566e^-4	0.694	SYNONYMOUS_CODING Alk
2R	8446090	2R_8446090_SNP [dm3] 2R_12558585_SNP [dm6]	A	G	3.566e^-4	0.694	NON_SYNONYMOUS_CODING fra INTRON fra
3R	3624932	3R_3624932_SNP [dm3] 3R_7799210_SNP [dm6]	G	T	3.568e^-4	0.694	UPSTREAM CG18744 DOWNSTREAM CG3014 INTERGENIC
2R	18698226	2R_18698226_SNP [dm3] 2R_22810721_SNP [dm6]	T	C	3.570e^-4	0.694	INTRON stl
2L	19818323	2L_19818323_SNP [dm3] 2L_19818323_SNP [dm6]	A	C	3.572e^-4	0.694	INTRON sick	transposable element FlyBase
2R	10517093	2R_10517093_SNP [dm3] 2R_14629588_SNP [dm6]	T	C	3.574e^-4	0.694	UPSTREAM CG10131 INTERGENIC
2L	14994317	2L_14994317_SNP [dm3] 2L_14994317_SNP [dm6]	A	G	3.577e^-4	0.694	INTRON mol
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	3.581e^-4	0.694	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	3399251	2L_3399251_SNP [dm3] 2L_3399251_SNP [dm6]	C	T	3.582e^-4	0.694	DOWNSTREAM CG34175 INTERGENIC
2L	3577995	2L_3577995_SNP [dm3] 2L_3577995_SNP [dm6]	A	G	3.586e^-4	0.694	DOWNSTREAM sob INTERGENIC
2R	17240031	2R_17240031_SNP [dm3] 2R_21352526_SNP [dm6]	A	T	3.591e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8216015	2L_8216015_SNP [dm3] 2L_8216015_SNP [dm6]	C	G	3.595e^-4	0.694	SYNONYMOUS_CODING CG8349 DOWNSTREAM CG8353 & 1 other
X	16529508	X_16529508_SNP [dm3] X_16635475_SNP [dm6]	A	G	3.601e^-4	0.694	INTRON Rok
2L	3392446	2L_3392446_SNP [dm3] 2L_3392446_SNP [dm6]	A	G	3.604e^-4	0.694	INTERGENIC
2L	13998828	2L_13998828_SNP [dm3] 2L_13998828_SNP [dm6]	C	T	3.604e^-4	0.694	INTRON rk
3R	14369965	3R_14369965_SNP [dm3] 3R_18544243_SNP [dm6]	G	A	3.608e^-4	0.694	INTRON fru
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	3.609e^-4	0.694	INTRON Ptp99A
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	3.610e^-4	0.694	INTRON CG31690
2L	9216036	2L_9216036_SNP [dm3] 2L_9216036_SNP [dm6]	G	A	3.612e^-4	0.694	INTRON tai
2R	10671168	2R_10671168_SNP [dm3] 2R_14783663_SNP [dm6]	C	T	3.613e^-4	0.694	INTRON kn	TF binding site mE1_TFBS_chinmo
2R	9572547	2R_9572547_SNP [dm3] 2R_13685042_SNP [dm6]	G	A	3.617e^-4	0.694	INTRON fas
2R	10371485	2R_10371485_SNP [dm3] 2R_14483980_SNP [dm6]	C	T	3.617e^-4	0.694	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13287821	2R_13287821_DEL [dm3] 2R_17400316_DEL [dm6]	TCTGCGTTT	T	3.618e^-4	0.694	INTRON Sip1
2L	8216030	2L_8216030_SNP [dm3] 2L_8216030_SNP [dm6]	G	A	3.623e^-4	0.694	SYNONYMOUS_CODING CG8349 DOWNSTREAM CG8353 & 1 other
2R	10711040	2R_10711040_SNP [dm3] 2R_14823535_SNP [dm6]	G	A	3.633e^-4	0.695	DOWNSTREAM CR45329 INTERGENIC
X	8966568	X_8966568_SNP [dm3] X_9072535_SNP [dm6]	C	G	3.636e^-4	0.695	UTR_3_PRIME CG44325 DOWNSTREAM CG44325 INTRON CG44325
3L	9896886	3L_9896886_SNP [dm3] 3L_9903786_SNP [dm6]	A	G	3.640e^-4	0.695	DOWNSTREAM nudE INTERGENIC
3R	25379847	3R_25379847_SNP [dm3] 3R_29554125_SNP [dm6]	A	T	3.645e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	4446725	3L_4446725_SNP [dm3] 3L_4446725_SNP [dm6]	T	C	3.649e^-4	0.695	UPSTREAM CR45739 INTRON CG12607
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	3.651e^-4	0.695	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	4008808	3L_4008808_SNP [dm3] 3L_4008808_SNP [dm6]	C	T	3.657e^-4	0.696	INTERGENIC
3L	11616978	3L_11616978_SNP [dm3] 3L_11623878_SNP [dm6]	A	T	3.665e^-4	0.696	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2L	5437693	2L_5437693_SNP [dm3] 2L_5437693_SNP [dm6]	C	T	3.672e^-4	0.697	INTRON CR31647 EXON snoRNA:Me28S-A2486
2L	14047300	2L_14047300_SNP [dm3] 2L_14047300_SNP [dm6]	A	G	3.675e^-4	0.697	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	7014413	3R_7014413_SNP [dm3] 3R_11188691_SNP [dm6]	G	A	3.686e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8451556	X_8451556_SNP [dm3] X_8557523_SNP [dm6]	C	T	3.687e^-4	0.698	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7774767	2L_7774767_SNP [dm3] 2L_7774767_SNP [dm6]	G	A	3.704e^-4	0.7	UTR_3_PRIME CG7191
3R	18485073	3R_18485073_SNP [dm3] 3R_22659351_SNP [dm6]	T	C	3.711e^-4	0.701	INTRON CG45058
3L	1000080	3L_1000080_SNP [dm3] 3L_1000080_SNP [dm6]	G	A	3.724e^-4	0.702	INTRON trio
X	17250787	X_17250787_SNP [dm3] X_17356754_SNP [dm6]	T	G	3.725e^-4	0.702	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	19171302	2R_19171302_SNP [dm3] 2R_23283779_SNP [dm6]	G	T	3.726e^-4	0.702	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
3R	13721374	3R_13721374_SNP [dm3] 3R_17895652_SNP [dm6]	T	G	3.732e^-4	0.702	INTRON Rim
3L	13458631	3L_13458631_SNP [dm3] 3L_13465531_SNP [dm6]	T	G	3.740e^-4	0.703	UTR_3_PRIME CG10738 DOWNSTREAM CG10089
2L	7749193	2L_7749193_SNP [dm3] 2L_7749193_SNP [dm6]	C	T	3.745e^-4	0.703	INTERGENIC
3R	13764021	3R_13764021_SNP [dm3] 3R_17938299_SNP [dm6]	C	A	3.748e^-4	0.703	INTRON cpo

By genomic position
Variant impact
Gene name

Delta_Alive.at.48h Experience 4 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results