DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.170e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0001218
In_2R_NS	0.0587515
In_3R_P	0.0707850

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.5174	0.0086

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2361 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	8.756e^-7	0.608	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18577629	3L_18577629_SNP [dm3] 3L_18584529_SNP [dm6]	G	A	1.139e^-6	0.608	DOWNSTREAM CR45435 INTERGENIC
2L	19324776	2L_19324776_SNP [dm3] 2L_19324776_SNP [dm6]	G	T	1.317e^-6	0.608	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2066038	2R_2066038_SNP [dm3] 2R_6178533_SNP [dm6]	T	A	1.735e^-6	0.608	DOWNSTREAM tRNA:R2:42Aa INTERGENIC	regulatory region REDfly_CRMs
2R	12435213	2R_12435213_SNP [dm3] 2R_16547708_SNP [dm6]	A	G	1.955e^-6	0.608	INTERGENIC
2R	16994061	2R_16994061_SNP [dm3] 2R_21106556_SNP [dm6]	T	G	2.419e^-6	0.608	INTRON ktub
2L	19324779	2L_19324779_SNP [dm3] 2L_19324779_SNP [dm6]	G	A	2.628e^-6	0.608	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5812552	3L_5812552_SNP [dm3] 3L_5819452_SNP [dm6]	C	A	2.800e^-6	0.608	INTRON vn
3L	5812559	3L_5812559_SNP [dm3] 3L_5819459_SNP [dm6]	C	A	2.918e^-6	0.608	INTRON vn
3R	4961130	3R_4961130_INS [dm3] 3R_9135408_INS [dm6]	G	GG	3.941e^-6	0.629	INTRON pum
3L	18071363	3L_18071363_SNP [dm3] 3L_18078263_SNP [dm6]	T	A	4.733e^-6	0.629	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18071365	3L_18071365_SNP [dm3] 3L_18078265_SNP [dm6]	A	T	4.733e^-6	0.629	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1830512	2R_1830512_SNP [dm3] 2R_5943007_SNP [dm6]	A	G	4.897e^-6	0.629	INTERGENIC
2R	16994062	2R_16994062_SNP [dm3] 2R_21106557_SNP [dm6]	G	T	5.109e^-6	0.629	INTRON ktub
X	10019999	X_10019999_SNP [dm3] X_10125966_SNP [dm6]	C	T	5.311e^-6	0.629	INTRON CR44894 & 1 other
3L	12165879	3L_12165879_SNP [dm3] 3L_12172779_SNP [dm6]	A	T	5.959e^-6	0.629	INTRON Rh7
2R	16994059	2R_16994059_SNP [dm3] 2R_21106554_SNP [dm6]	T	A	6.140e^-6	0.629	INTRON ktub
3R	2957640	3R_2957640_SNP [dm3] 3R_7131918_SNP [dm6]	A	T	6.845e^-6	0.629	SPLICE_SITE_REGION CG31493 SYNONYMOUS_CODING CG31493 UPSTREAM tRNA:CR31491 INTRON CG31493
X	13444081	X_13444081_SNP [dm3] X_13550048_SNP [dm6]	G	A	7.077e^-6	0.629	INTERGENIC
3L	13019640	3L_13019640_SNP [dm3] 3L_13026540_SNP [dm6]	T	G	7.404e^-6	0.629	UPSTREAM Zmynd10 INTERGENIC
3L	5810288	3L_5810288_SNP [dm3] 3L_5817188_SNP [dm6]	A	T	7.519e^-6	0.629	INTRON vn	regulatory region REDfly_CRMs
2L	3408526	2L_3408526_SNP [dm3] 2L_3408526_SNP [dm6]	A	G	7.969e^-6	0.629	INTRON pgant2
2L	20690724	2L_20690724_SNP [dm3] 2L_20690724_SNP [dm6]	A	T	8.129e^-6	0.629	INTRON Hr38	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	16522370	X_16522370_SNP [dm3] X_16628337_SNP [dm6]	G	A	8.211e^-6	0.629	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
2R	16175623	2R_16175623_SNP [dm3] 2R_20288118_SNP [dm6]	A	G	8.531e^-6	0.629	SYNONYMOUS_CODING CG34199 DOWNSTREAM Cpr56F
2L	20762989	2L_20762989_SNP [dm3] 2L_20762989_SNP [dm6]	T	C	8.726e^-6	0.629	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
2L	3926353	2L_3926353_SNP [dm3] 2L_3926353_SNP [dm6]	C	A	9.361e^-6	0.647	INTRON fred	TF binding site mE1_TFBS_bab1
3R	11990909	3R_11990909_SNP [dm3] 3R_16165187_SNP [dm6]	A	T	9.666e^-6	0.647	INTRON CG6006
3L	8503867	3L_8503867_SNP [dm3] 3L_8510767_SNP [dm6]	G	A	1.115e^-5	0.713	NON_SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
3L	11068397	3L_11068397_SNP [dm3] 3L_11075297_SNP [dm6]	A	T	1.269e^-5	0.713	NON_SYNONYMOUS_CODING CG7839 UPSTREAM l_3_01239	TF binding site mE1_TFBS_sens
2R	19719293	2R_19719293_SNP [dm3] 2R_23831770_SNP [dm6]	C	G	1.273e^-5	0.713	INTRON CG5549
2L	20762983	2L_20762983_SNP [dm3] 2L_20762983_SNP [dm6]	C	A	1.284e^-5	0.713	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
2R	8504375	2R_8504375_SNP [dm3] 2R_12616870_SNP [dm6]	T	G	1.342e^-5	0.713	SYNONYMOUS_CODING Galphaq UTR_3_PRIME CG45086	TF binding site mE1_TFBS_sens
2R	16994055	2R_16994055_DEL [dm3] 2R_21106550_DEL [dm6]	AT	A	1.348e^-5	0.713	INTRON ktub
3L	12482750	3L_12482750_SNP [dm3] 3L_12489650_SNP [dm6]	A	C	1.357e^-5	0.713	UPSTREAM CR45681 INTRON CG10660	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18490711	3L_18490711_SNP [dm3] 3L_18497611_SNP [dm6]	T	C	1.369e^-5	0.713	INTRON AstC-R2	TF binding site BDTNP1_TFBS_twi
2L	4789881	2L_4789881_SNP [dm3] 2L_4789881_SNP [dm6]	G	A	1.411e^-5	0.715	INTRON CG15630
3L	15249826	3L_15249826_INS [dm3] 3L_15256726_INS [dm6]	C	ACTT	1.636e^-5	0.783	INTERGENIC
3L	9678679	3L_9678679_SNP [dm3] 3L_9685579_SNP [dm6]	G	T	1.669e^-5	0.783	NON_SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8747098	3L_8747098_SNP [dm3] 3L_8753998_SNP [dm6]	T	A	1.844e^-5	0.783	UTR_5_PRIME Fhos UPSTREAM Fhos
2R	12608881	2R_12608881_SNP [dm3] 2R_16721376_SNP [dm6]	C	G	1.894e^-5	0.783	INTRON CG30463	TF binding site mE1_TFBS_inv
X	471714	X_471714_SNP [dm3] X_577681_SNP [dm6]	T	G	2.050e^-5	0.783	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	9575068	3R_9575068_SNP [dm3] 3R_13749346_SNP [dm6]	C	T	2.121e^-5	0.783	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1173082	X_1173082_SNP [dm3] X_1279049_SNP [dm6]	A	T	2.290e^-5	0.783	INTERGENIC
2L	6903262	2L_6903262_SNP [dm3] 2L_6903262_SNP [dm6]	T	C	2.304e^-5	0.783	SYNONYMOUS_CODING Nlg2
2L	8143941	2L_8143941_SNP [dm3] 2L_8143941_SNP [dm6]	C	T	2.380e^-5	0.783	DOWNSTREAM CG42763 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15249791	3L_15249791_SNP [dm3] 3L_15256691_SNP [dm6]	G	A	2.423e^-5	0.783	INTERGENIC
3R	10775839	3R_10775839_SNP [dm3] 3R_14950117_SNP [dm6]	C	A	2.523e^-5	0.783	INTERGENIC
2R	6181881	2R_6181881_SNP [dm3] 2R_10294376_SNP [dm6]	T	C	2.559e^-5	0.783	INTRON CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18628743	2L_18628743_SNP [dm3] 2L_18628743_SNP [dm6]	A	T	2.677e^-5	0.783	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13444064	X_13444064_SNP [dm3] X_13550031_SNP [dm6]	C	T	2.775e^-5	0.783	INTERGENIC
2R	12807397	2R_12807397_SNP [dm3] 2R_16919892_SNP [dm6]	A	C	2.781e^-5	0.783	INTERGENIC
3R	3150641	3R_3150641_SNP [dm3] 3R_7324919_SNP [dm6]	T	G	2.922e^-5	0.783	UPSTREAM CG44335 INTERGENIC
X	13444096	X_13444096_SNP [dm3] X_13550063_SNP [dm6]	C	T	2.931e^-5	0.783	INTERGENIC
2R	10505946	2R_10505946_SNP [dm3] 2R_14618441_SNP [dm6]	G	A	3.093e^-5	0.783	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19714934	2R_19714934_SNP [dm3] 2R_23827411_SNP [dm6]	G	A	3.140e^-5	0.783	INTRON CG5549	TF binding site mE1_TFBS_inv
2R	16175545	2R_16175545_SNP [dm3] 2R_20288040_SNP [dm6]	A	G	3.153e^-5	0.783	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	16994041	2R_16994041_SNP [dm3] 2R_21106536_SNP [dm6]	T	A	3.238e^-5	0.783	INTRON ktub
3L	14798382	3L_14798382_SNP [dm3] 3L_14805282_SNP [dm6]	A	G	3.330e^-5	0.783	UTR_5_PRIME CG17839
2L	3924618	2L_3924618_SNP [dm3] 2L_3924618_SNP [dm6]	C	T	3.348e^-5	0.783	INTRON fred
2L	9189774	2L_9189774_SNP [dm3] 2L_9189774_SNP [dm6]	C	T	3.395e^-5	0.783	INTRON tai
2R	17022265	2R_17022265_DEL [dm3] 2R_21134760_DEL [dm6]	ACATA	A	3.430e^-5	0.783	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17022278	2R_17022278_SNP [dm3] 2R_21134773_SNP [dm6]	A	C	3.430e^-5	0.783	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16916682	2R_16916682_SNP [dm3] 2R_21029177_SNP [dm6]	T	A	3.490e^-5	0.783	DOWNSTREAM CR45148 INTERGENIC
2R	17110852	2R_17110852_SNP [dm3] 2R_21223347_SNP [dm6]	G	A	3.600e^-5	0.783	INTRON ASPP
X	7909444	X_7909444_SNP [dm3] X_8015411_SNP [dm6]	G	A	3.620e^-5	0.783	INTRON Tbh
2L	7629859	2L_7629859_SNP [dm3] 2L_7629859_SNP [dm6]	C	T	3.645e^-5	0.783	INTERGENIC
2L	4789896	2L_4789896_SNP [dm3] 2L_4789896_SNP [dm6]	C	T	3.666e^-5	0.783	INTRON CG15630
X	3516236	X_3516236_SNP [dm3] X_3622203_SNP [dm6]	A	C	3.681e^-5	0.783	INTRON AstA-R1
3R	27058663	3R_27058663_SNP [dm3] 3R_31232941_SNP [dm6]	T	C	3.741e^-5	0.783	SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
2R	5876150	2R_5876150_SNP [dm3] 2R_9988645_SNP [dm6]	T	G	3.745e^-5	0.783	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	21729884	2L_21729884_SNP [dm3] 2L_21729884_SNP [dm6]	T	G	3.822e^-5	0.783	DOWNSTREAM CG31619 INTERGENIC	transposable element FlyBase
3R	3262533	3R_3262533_SNP [dm3] 3R_7436811_SNP [dm6]	C	A	3.848e^-5	0.783	INTERGENIC
3L	18071370	3L_18071370_SNP [dm3] 3L_18078270_SNP [dm6]	C	A	3.873e^-5	0.783	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19714907	2R_19714907_INS [dm3] 2R_23827384_INS [dm6]	C	CTCCCCCA	3.914e^-5	0.783	INTRON CG5549	TF binding site mE1_TFBS_inv
3L	12356469	3L_12356469_SNP [dm3] 3L_12363369_SNP [dm6]	G	A	3.976e^-5	0.783	INTERGENIC
3L	16691025	3L_16691025_SNP [dm3] 3L_16697925_SNP [dm6]	G	A	4.116e^-5	0.783	DOWNSTREAM CR45179 INTRON Lasp & 1 other
X	6455628	X_6455628_SNP [dm3] X_6561595_SNP [dm6]	G	T	4.124e^-5	0.783	INTRON CG34417	TF binding site mE1_TFBS_sens
2R	12434445	2R_12434445_SNP [dm3] 2R_16546940_SNP [dm6]	T	G	4.141e^-5	0.783	INTERGENIC
X	17272588	X_17272588_SNP [dm3] X_17378555_SNP [dm6]	T	G	4.142e^-5	0.783	EXON CR43491
X	13444087	X_13444087_SNP [dm3] X_13550054_SNP [dm6]	A	G	4.145e^-5	0.783	INTERGENIC
3L	2806678	3L_2806678_SNP [dm3] 3L_2806678_SNP [dm6]	C	G	4.175e^-5	0.783	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17411416	2R_17411416_SNP [dm3] 2R_21523911_SNP [dm6]	T	C	4.176e^-5	0.783	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9935321	3L_9935321_SNP [dm3] 3L_9942221_SNP [dm6]	G	A	4.214e^-5	0.783	INTRON CG34356
3R	3216520	3R_3216520_SNP [dm3] 3R_7390798_SNP [dm6]	A	C	4.276e^-5	0.783	UPSTREAM CG42650 INTERGENIC
2R	17022895	2R_17022895_SNP [dm3] 2R_21135390_SNP [dm6]	C	T	4.312e^-5	0.783	INTRON Magi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25158853	3R_25158853_SNP [dm3] 3R_29333131_SNP [dm6]	G	T	4.320e^-5	0.783	INTERGENIC
3L	9113341	3L_9113341_SNP [dm3] 3L_9120241_SNP [dm6]	A	C	4.441e^-5	0.783	INTRON bol
2L	838639	2L_838639_SNP [dm3] 2L_838639_SNP [dm6]	G	T	4.483e^-5	0.783	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	2955189	3R_2955189_SNP [dm3] 3R_7129467_SNP [dm6]	G	T	4.499e^-5	0.783	UTR_5_PRIME CG31248 UPSTREAM tRNA:CR31494 DOWNSTREAM CR42875
3R	27526525	3R_27526525_SNP [dm3] 3R_31700803_SNP [dm6]	A	G	4.502e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9311557	2L_9311557_SNP [dm3] 2L_9311557_SNP [dm6]	T	C	4.503e^-5	0.783	INTERGENIC
3R	11990934	3R_11990934_DEL [dm3] 3R_16165212_DEL [dm6]	TTTTA	T	4.526e^-5	0.783	INTRON CG6006
2R	14077089	2R_14077089_SNP [dm3] 2R_18189584_SNP [dm6]	T	G	4.545e^-5	0.783	UTR_3_PRIME CG14500 INTRON CG33958
3L	2349722	3L_2349722_SNP [dm3] 3L_2349722_SNP [dm6]	T	C	4.577e^-5	0.783	INTERGENIC
3R	27133612	3R_27133612_SNP [dm3] 3R_31307890_SNP [dm6]	A	G	4.587e^-5	0.783	INTERGENIC
3R	21438345	3R_21438345_SNP [dm3] 3R_25612623_SNP [dm6]	G	A	4.637e^-5	0.783	INTRON Npl4
2L	3858903	2L_3858903_SNP [dm3] 2L_3858903_SNP [dm6]	T	C	4.747e^-5	0.783	INTERGENIC
2R	8669121	2R_8669121_SNP [dm3] 2R_12781616_SNP [dm6]	A	C	4.794e^-5	0.783	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16347680	3L_16347680_SNP [dm3] 3L_16354580_SNP [dm6]	T	C	4.871e^-5	0.783	UPSTREAM Pdh DOWNSTREAM CG45057 INTERGENIC
2L	1611377	2L_1611377_SNP [dm3] 2L_1611377_SNP [dm6]	G	A	4.904e^-5	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	13883480	X_13883480_SNP [dm3] X_13989447_SNP [dm6]	T	G	4.931e^-5	0.783	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8143237	2L_8143237_SNP [dm3] 2L_8143237_SNP [dm6]	G	C	4.945e^-5	0.783	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12092434	3L_12092434_SNP [dm3] 3L_12099334_SNP [dm6]	C	G	4.980e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13452482	X_13452482_SNP [dm3] X_13558449_SNP [dm6]	C	T	5.110e^-5	0.783	DOWNSTREAM CG32631 INTERGENIC
2R	10505954	2R_10505954_SNP [dm3] 2R_14618449_SNP [dm6]	G	T	5.142e^-5	0.783	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1999350	3L_1999350_SNP [dm3] 3L_1999350_SNP [dm6]	T	A	5.206e^-5	0.783	INTERGENIC
X	490228	X_490228_SNP [dm3] X_596195_SNP [dm6]	G	T	5.258e^-5	0.783	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12324406	3L_12324406_SNP [dm3] 3L_12331306_SNP [dm6]	T	G	5.272e^-5	0.783	INTRON CG32105	TF binding site mE1_TFBS_cad
2L	13953077	2L_13953077_SNP [dm3] 2L_13953077_SNP [dm6]	C	A	5.278e^-5	0.783	INTRON Ance-3
2L	18454167	2L_18454167_SNP [dm3] 2L_18454167_SNP [dm6]	C	T	5.319e^-5	0.783	UPSTREAM Ntf-2r INTRON bsf	TF binding site BDTNP1_TFBS_dl
X	13019479	X_13019479_SNP [dm3] X_13125446_SNP [dm6]	T	C	5.451e^-5	0.783	INTRON CG32638
2R	17022312	2R_17022312_SNP [dm3] 2R_21134807_SNP [dm6]	C	T	5.465e^-5	0.783	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1255807	2L_1255807_SNP [dm3] 2L_1255807_SNP [dm6]	A	T	5.554e^-5	0.783	UPSTREAM robo3 INTERGENIC
3L	5438187	3L_5438187_SNP [dm3] 3L_5445087_SNP [dm6]	C	T	5.562e^-5	0.783	INTERGENIC
2R	16055671	2R_16055671_SNP [dm3] 2R_20168166_SNP [dm6]	C	T	5.563e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27527252	3R_27527252_SNP [dm3] 3R_31701530_SNP [dm6]	C	T	5.592e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12313598	3L_12313598_SNP [dm3] 3L_12320498_SNP [dm6]	G	A	5.639e^-5	0.783	INTERGENIC
X	3516238	X_3516238_SNP [dm3] X_3622205_SNP [dm6]	T	C	5.660e^-5	0.783	INTRON AstA-R1
2L	2241149	2L_2241149_SNP [dm3] 2L_2241149_SNP [dm6]	A	C	5.738e^-5	0.783	UPSTREAM Tengl1 INTERGENIC
X	16522162	X_16522162_SNP [dm3] X_16628129_SNP [dm6]	C	T	5.761e^-5	0.783	NON_SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
3L	4439015	3L_4439015_SNP [dm3] 3L_4439015_SNP [dm6]	C	A	5.799e^-5	0.783	DOWNSTREAM CG15021 INTERGENIC
3L	19860558	3L_19860558_SNP [dm3] 3L_19867458_SNP [dm6]	C	T	5.827e^-5	0.783	DOWNSTREAM Rab8 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9223448	2R_9223448_SNP [dm3] 2R_13335943_SNP [dm6]	G	A	5.879e^-5	0.783	INTRON CR44206
X	17119498	X_17119498_SNP [dm3] X_17225465_SNP [dm6]	G	A	5.905e^-5	0.783	UTR_3_PRIME CG10598 DOWNSTREAM CG10598
3L	12313631	3L_12313631_SNP [dm3] 3L_12320531_SNP [dm6]	C	G	5.929e^-5	0.783	INTERGENIC
3R	20254325	3R_20254325_SNP [dm3] 3R_24428603_SNP [dm6]	T	C	5.958e^-5	0.783	INTRON nAChRalpha1
3R	16919257	3R_16919257_SNP [dm3] 3R_21093535_SNP [dm6]	G	A	6.073e^-5	0.783	INTRON RhoGAP93B & 1 other
2L	17307133	2L_17307133_SNP [dm3] 2L_17307133_SNP [dm6]	A	G	6.075e^-5	0.783	INTERGENIC
X	21181927	X_21181927_SNP [dm3] X_21310900_SNP [dm6]	C	T	6.088e^-5	0.783	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26867856	3R_26867856_DEL [dm3] 3R_31042134_DEL [dm6]	TGTTTCCCGTTGATAT...	T	6.101e^-5	0.783	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
2R	13635607	2R_13635607_SNP [dm3] 2R_17748102_SNP [dm6]	C	T	6.106e^-5	0.783	UPSTREAM CG10931 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5957011	2R_5957011_SNP [dm3] 2R_10069506_SNP [dm6]	T	G	6.108e^-5	0.783	UPSTREAM cdc2rk INTRON CG12920
3R	2942595	3R_2942595_SNP [dm3] 3R_7116873_SNP [dm6]	C	T	6.135e^-5	0.783	UPSTREAM Mlp84B INTRON Alh & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12869847	2R_12869847_SNP [dm3] 2R_16982342_SNP [dm6]	G	C	6.247e^-5	0.783	INTRON Cbp53E
3R	25158804	3R_25158804_SNP [dm3] 3R_29333082_SNP [dm6]	A	G	6.248e^-5	0.783	INTERGENIC
3R	11990942	3R_11990942_DEL [dm3] 3R_16165220_DEL [dm6]	GCTA	G	6.250e^-5	0.783	INTRON CG6006
2R	1810374	2R_1810374_SNP [dm3] 2R_5922869_SNP [dm6]	C	T	6.286e^-5	0.783	INTRON CG43366
X	5890381	X_5890381_SNP [dm3] X_5996348_SNP [dm6]	C	T	6.300e^-5	0.783	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA
2R	10506038	2R_10506038_SNP [dm3] 2R_14618533_SNP [dm6]	A	G	6.311e^-5	0.783	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1103480	2L_1103480_SNP [dm3] 2L_1103480_SNP [dm6]	A	C	6.322e^-5	0.783	UTR_3_PRIME mtRNApol UPSTREAM CG4629 DOWNSTREAM mtRNApol
X	13443218	X_13443218_SNP [dm3] X_13549185_SNP [dm6]	C	G	6.332e^-5	0.783	INTERGENIC
3L	16853694	3L_16853694_SNP [dm3] 3L_16860594_SNP [dm6]	C	G	6.335e^-5	0.783	UPSTREAM CG13029 DOWNSTREAM sinah INTRON Rh4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	16175364	2R_16175364_SNP [dm3] 2R_20287859_SNP [dm6]	C	T	6.370e^-5	0.783	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	5342238	2R_5342238_SNP [dm3] 2R_9454733_SNP [dm6]	A	G	6.379e^-5	0.783	UPSTREAM CG33758 INTRON Camta & 1 other
2L	20750617	2L_20750617_SNP [dm3] 2L_20750617_SNP [dm6]	G	A	6.448e^-5	0.783	UTR_3_PRIME Fs_2_Ket DOWNSTREAM CG9319	TF binding site mE1_TFBS_sens
2R	5342240	2R_5342240_SNP [dm3] 2R_9454735_SNP [dm6]	C	T	6.463e^-5	0.783	UPSTREAM CG33758 INTRON Camta & 1 other
2L	7631465	2L_7631465_SNP [dm3] 2L_7631465_SNP [dm6]	C	T	6.492e^-5	0.783	INTERGENIC
2L	5017832	2L_5017832_SNP [dm3] 2L_5017832_SNP [dm6]	T	A	6.492e^-5	0.783	NON_SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18482258	3R_18482258_SNP [dm3] 3R_22656536_SNP [dm6]	T	A	6.534e^-5	0.783	INTRON CG45058
3L	2482234	3L_2482234_SNP [dm3] 3L_2482234_SNP [dm6]	C	A	6.646e^-5	0.783	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12092440	3L_12092440_SNP [dm3] 3L_12099340_SNP [dm6]	C	G	6.662e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6455345	X_6455345_SNP [dm3] X_6561312_SNP [dm6]	A	C	6.684e^-5	0.783	SYNONYMOUS_CODING CG34417
2L	1611285	2L_1611285_SNP [dm3] 2L_1611285_SNP [dm6]	T	C	6.772e^-5	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	14516150	2R_14516150_SNP [dm3] 2R_18628645_SNP [dm6]	C	T	6.794e^-5	0.783	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1810390	2R_1810390_SNP [dm3] 2R_5922885_SNP [dm6]	A	G	6.819e^-5	0.783	INTRON CG43366
2L	14300258	2L_14300258_SNP [dm3] 2L_14300258_SNP [dm6]	C	T	6.877e^-5	0.783	UPSTREAM wb INTRON wb
2R	12282055	2R_12282055_SNP [dm3] 2R_16394550_SNP [dm6]	G	A	7.014e^-5	0.783	INTRON Sema-2b
3L	12157252	3L_12157252_SNP [dm3] 3L_12164152_SNP [dm6]	C	T	7.034e^-5	0.783	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15820178	3L_15820178_SNP [dm3] 3L_15827078_SNP [dm6]	A	G	7.040e^-5	0.783	UTR_5_PRIME dbo UPSTREAM Dcp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	9285592	2L_9285592_SNP [dm3] 2L_9285592_SNP [dm6]	A	C	7.042e^-5	0.783	INTRON Ggamma30A
2R	16780752	2R_16780752_SNP [dm3] 2R_20893247_SNP [dm6]	T	C	7.088e^-5	0.783	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19719313	2R_19719313_SNP [dm3] 2R_23831790_SNP [dm6]	G	A	7.130e^-5	0.783	INTRON CG5549
3R	20254377	3R_20254377_SNP [dm3] 3R_24428655_SNP [dm6]	T	C	7.159e^-5	0.783	INTRON nAChRalpha1
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	7.211e^-5	0.783	INTRON bol
2R	13747447	2R_13747447_SNP [dm3] 2R_17859942_SNP [dm6]	A	G	7.215e^-5	0.783	UTR_3_PRIME olf186-F UPSTREAM CG14490
2L	17307143	2L_17307143_SNP [dm3] 2L_17307143_SNP [dm6]	T	A	7.216e^-5	0.783	INTERGENIC
2L	12451249	2L_12451249_SNP [dm3] 2L_12451249_SNP [dm6]	G	A	7.378e^-5	0.783	SYNONYMOUS_CODING Oatp33Eb DOWNSTREAM CG5418	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16597172	X_16597172_SNP [dm3] X_16703139_SNP [dm6]	G	C	7.404e^-5	0.783	SYNONYMOUS_CODING CG9673 UPSTREAM CG4653 INTRON CG4678	TF binding site mE1_TFBS_chinmo
3R	25158851	3R_25158851_SNP [dm3] 3R_29333129_SNP [dm6]	G	A	7.452e^-5	0.783	INTERGENIC
3L	3980993	3L_3980993_SNP [dm3] 3L_3980993_SNP [dm6]	C	T	7.586e^-5	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	17149938	2R_17149938_SNP [dm3] 2R_21262433_SNP [dm6]	A	G	7.618e^-5	0.783	INTRON Rgk3
X	9215275	X_9215275_SNP [dm3] X_9321242_SNP [dm6]	T	A	7.706e^-5	0.783	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3L	1999368	3L_1999368_SNP [dm3] 3L_1999368_SNP [dm6]	C	A	7.711e^-5	0.783	INTERGENIC
2L	1611319	2L_1611319_SNP [dm3] 2L_1611319_SNP [dm6]	T	A	7.728e^-5	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	1611237	2L_1611237_SNP [dm3] 2L_1611237_SNP [dm6]	A	G	7.737e^-5	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12074790	3L_12074790_SNP [dm3] 3L_12081690_SNP [dm6]	A	G	7.752e^-5	0.783	UTR_5_PRIME Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	6903398	2L_6903398_SNP [dm3] 2L_6903398_SNP [dm6]	A	T	7.758e^-5	0.783	INTRON Nlg2
3L	11036559	3L_11036559_SNP [dm3] 3L_11043459_SNP [dm6]	A	C	7.766e^-5	0.783	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	5090243	3R_5090243_SNP [dm3] 3R_9264521_SNP [dm6]	A	T	8.049e^-5	0.783	UPSTREAM sage DOWNSTREAM Aats-trp INTERGENIC
X	9288630	X_9288630_SNP [dm3] X_9394597_SNP [dm6]	C	T	8.079e^-5	0.783	INTRON mgl
3R	24413344	3R_24413344_SNP [dm3] 3R_28587622_SNP [dm6]	G	A	8.081e^-5	0.783	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18559941	X_18559941_SNP [dm3] X_18665908_SNP [dm6]	C	T	8.133e^-5	0.783	UPSTREAM CR45514 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14596280	3L_14596280_SNP [dm3] 3L_14603180_SNP [dm6]	A	T	8.149e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	18556881	2L_18556881_SNP [dm3] 2L_18556881_SNP [dm6]	G	A	8.181e^-5	0.783	INTRON Pde11
2L	12397864	2L_12397864_SNP [dm3] 2L_12397864_SNP [dm6]	C	G	8.266e^-5	0.783	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	16156481	2R_16156481_SNP [dm3] 2R_20268976_SNP [dm6]	G	A	8.297e^-5	0.783	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25343116	3R_25343116_SNP [dm3] 3R_29517394_SNP [dm6]	T	C	8.307e^-5	0.783	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17109696	2R_17109696_SNP [dm3] 2R_21222191_SNP [dm6]	C	T	8.378e^-5	0.783	INTRON ASPP	TF binding site mE1_TFBS_cad
3L	14457227	3L_14457227_SNP [dm3] 3L_14464127_SNP [dm6]	C	A	8.403e^-5	0.783	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18578494	3L_18578494_SNP [dm3] 3L_18585394_SNP [dm6]	C	T	8.465e^-5	0.783	INTERGENIC
X	1899830	X_1899830_SNP [dm3] X_2005797_SNP [dm6]	T	C	8.529e^-5	0.783	UTR_3_PRIME Hr4 DOWNSTREAM Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	3250686	3R_3250686_SNP [dm3] 3R_7424964_SNP [dm6]	T	C	8.553e^-5	0.783	INTERGENIC
2R	10565215	2R_10565215_SNP [dm3] 2R_14677710_SNP [dm6]	G	A	8.554e^-5	0.783	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
3R	2094369	3R_2094369_SNP [dm3] 3R_6268647_SNP [dm6]	C	T	8.893e^-5	0.783	SYNONYMOUS_CODING Osi11
2L	3858835	2L_3858835_SNP [dm3] 2L_3858835_SNP [dm6]	T	C	8.904e^-5	0.783	INTERGENIC
2L	14335709	2L_14335709_SNP [dm3] 2L_14335709_SNP [dm6]	C	T	9.016e^-5	0.783	INTRON CG33090
3L	12145556	3L_12145556_SNP [dm3] 3L_12152456_SNP [dm6]	A	G	9.138e^-5	0.783	SYNONYMOUS_CODING Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	3980996	3L_3980996_SNP [dm3] 3L_3980996_SNP [dm6]	A	G	9.169e^-5	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	3820929	3L_3820929_SNP [dm3] 3L_3820929_SNP [dm6]	G	T	9.186e^-5	0.783	INTRON enc
X	10796831	X_10796831_SNP [dm3] X_10902798_SNP [dm6]	A	C	9.212e^-5	0.783	DOWNSTREAM CG15208 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	18096248	3R_18096248_SNP [dm3] 3R_22270526_SNP [dm6]	T	C	9.220e^-5	0.783	INTRON SKIP
2R	10505936	2R_10505936_SNP [dm3] 2R_14618431_SNP [dm6]	T	A	9.306e^-5	0.783	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20264996	3R_20264996_SNP [dm3] 3R_24439274_SNP [dm6]	G	A	9.370e^-5	0.783	UPSTREAM CR43455 INTRON nAChRalpha1
3L	8855898	3L_8855898_SNP [dm3] 3L_8862798_SNP [dm6]	T	G	9.375e^-5	0.783	INTRON dally	TF binding site BDTNP1_TFBS_prd
2R	13744174	2R_13744174_SNP [dm3] 2R_17856669_SNP [dm6]	T	C	9.383e^-5	0.783	UTR_5_PRIME olf186-F INTRON olf186-F
X	13886422	X_13886422_SNP [dm3] X_13992389_SNP [dm6]	A	G	9.423e^-5	0.783	DOWNSTREAM CR44655 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17579955	3L_17579955_SNP [dm3] 3L_17586855_SNP [dm6]	A	G	9.535e^-5	0.783	INTRON Eip74EF
3L	3820941	3L_3820941_SNP [dm3] 3L_3820941_SNP [dm6]	G	C	9.626e^-5	0.783	INTRON enc
3L	11519462	3L_11519462_SNP [dm3] 3L_11526362_SNP [dm6]	G	A	9.627e^-5	0.783	INTRON Mob2
3L	8865769	3L_8865769_SNP [dm3] 3L_8872669_SNP [dm6]	A	G	9.674e^-5	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
3R	22511257	3R_22511257_SNP [dm3] 3R_26685535_SNP [dm6]	A	G	9.781e^-5	0.783	INTERGENIC
3L	8865745	3L_8865745_SNP [dm3] 3L_8872645_SNP [dm6]	A	G	9.804e^-5	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
X	3543486	X_3543486_SNP [dm3] X_3649453_SNP [dm6]	T	C	9.828e^-5	0.783	INTRON AstA-R1
2R	12595387	2R_12595387_SNP [dm3] 2R_16707882_SNP [dm6]	A	G	9.856e^-5	0.783	INTRON CG30463
3L	1820740	3L_1820740_SNP [dm3] 3L_1820740_SNP [dm6]	T	G	9.882e^-5	0.783	INTRON GV1
3L	12482953	3L_12482953_SNP [dm3] 3L_12489853_SNP [dm6]	T	C	9.903e^-5	0.783	NON_SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13770251	2R_13770251_SNP [dm3] 2R_17882746_SNP [dm6]	G	A	1.011e^-4	0.783	UPSTREAM CG30110 INTRON Elk
3R	3074654	3R_3074654_SNP [dm3] 3R_7248932_SNP [dm6]	G	T	1.011e^-4	0.783	SYNONYMOUS_CODING CG1227 UPSTREAM CG10050 DOWNSTREAM CG10053	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2267198	2L_2267198_DEL [dm3] 2L_2267198_DEL [dm6]	GG	G	1.014e^-4	0.783	DOWNSTREAM CG17242 INTERGENIC
2L	8143516	2L_8143516_SNP [dm3] 2L_8143516_SNP [dm6]	C	T	1.022e^-4	0.783	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2927353	2L_2927353_DEL [dm3] 2L_2927353_DEL [dm6]	TAAT	T	1.038e^-4	0.783	INTRON lilli
2L	14315985	2L_14315985_SNP [dm3] 2L_14315985_SNP [dm6]	T	C	1.041e^-4	0.783	INTRON wb
X	6382244	X_6382244_SNP [dm3] X_6488211_SNP [dm6]	T	G	1.045e^-4	0.783	INTRON CG42340
3R	21830146	3R_21830146_SNP [dm3] 3R_26004424_SNP [dm6]	A	T	1.056e^-4	0.783	DOWNSTREAM E_spl_mbeta-HLH EXON CR45038
2L	10377870	2L_10377870_SNP [dm3] 2L_10377870_SNP [dm6]	C	T	1.059e^-4	0.783	SYNONYMOUS_CODING dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25304359	3R_25304359_SNP [dm3] 3R_29478637_SNP [dm6]	T	G	1.061e^-4	0.783	UPSTREAM Ptp99A INTRON Ptp99A
3L	11032591	3L_11032591_SNP [dm3] 3L_11039491_SNP [dm6]	C	T	1.067e^-4	0.783	INTRON CG43693
3R	24807492	3R_24807492_SNP [dm3] 3R_28981770_SNP [dm6]	T	G	1.069e^-4	0.783	INTERGENIC
3L	19430807	3L_19430807_SNP [dm3] 3L_19437707_SNP [dm6]	G	A	1.078e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	3230842	X_3230842_SNP [dm3] X_3336809_SNP [dm6]	A	G	1.079e^-4	0.783	INTRON CR44886 & 1 other
3L	3434936	3L_3434936_SNP [dm3] 3L_3434936_SNP [dm6]	A	T	1.080e^-4	0.783	INTRON eIF5B
3L	8865774	3L_8865774_SNP [dm3] 3L_8872674_SNP [dm6]	A	G	1.081e^-4	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
3R	25158859	3R_25158859_SNP [dm3] 3R_29333137_SNP [dm6]	T	C	1.082e^-4	0.783	INTERGENIC
X	6336911	X_6336911_SNP [dm3] X_6442878_SNP [dm6]	G	T	1.082e^-4	0.783	INTRON CG42340
2L	12451173	2L_12451173_SNP [dm3] 2L_12451173_SNP [dm6]	C	T	1.082e^-4	0.783	DOWNSTREAM CG5418 INTRON Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3431869	3L_3431869_SNP [dm3] 3L_3431869_SNP [dm6]	A	G	1.087e^-4	0.783	INTRON eIF5B
X	9618541	X_9618541_SNP [dm3] X_9724508_SNP [dm6]	A	T	1.088e^-4	0.783	INTERGENIC
X	13454079	X_13454079_SNP [dm3] X_13560046_SNP [dm6]	A	G	1.092e^-4	0.783	INTERGENIC
3R	14440003	3R_14440003_SNP [dm3] 3R_18614281_SNP [dm6]	C	T	1.093e^-4	0.783	INTRON qin & 1 other
3R	13093161	3R_13093161_SNP [dm3] 3R_17267439_SNP [dm6]	C	T	1.094e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5495369	2L_5495369_SNP [dm3] 2L_5495369_SNP [dm6]	C	A	1.096e^-4	0.783	INTERGENIC
2L	12451163	2L_12451163_SNP [dm3] 2L_12451163_SNP [dm6]	G	T	1.098e^-4	0.783	DOWNSTREAM CG5418 INTRON Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12681401	2L_12681401_SNP [dm3] 2L_12681401_SNP [dm6]	G	A	1.108e^-4	0.783	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3324978	3L_3324978_SNP [dm3] 3L_3324978_SNP [dm6]	A	C	1.117e^-4	0.783	SYNONYMOUS_CODING CG11526	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12144981	3L_12144981_SNP [dm3] 3L_12151881_SNP [dm6]	A	G	1.117e^-4	0.783	SYNONYMOUS_CODING Nrx-IV INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd
3R	3041234	3R_3041234_SNP [dm3] 3R_7215512_SNP [dm6]	C	T	1.120e^-4	0.783	SYNONYMOUS_CODING CG14606
X	13444027	X_13444027_DEL [dm3] X_13549994_DEL [dm6]	TGCAAT	T	1.123e^-4	0.783	INTERGENIC
X	10721550	X_10721550_SNP [dm3] X_10827517_SNP [dm6]	T	C	1.136e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1611238	2L_1611238_SNP [dm3] 2L_1611238_SNP [dm6]	C	A	1.138e^-4	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16263335	3L_16263335_SNP [dm3] 3L_16270235_SNP [dm6]	A	C	1.156e^-4	0.783	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	16592561	X_16592561_SNP [dm3] X_16698528_SNP [dm6]	G	A	1.161e^-4	0.783	DOWNSTREAM CG9676 INTRON CG4678
2L	19119266	2L_19119266_SNP [dm3] 2L_19119266_SNP [dm6]	G	A	1.171e^-4	0.783	UTR_5_PRIME Ddc INTRON Ddc	regulatory region REDfly_CRMs
2L	7620551	2L_7620551_SNP [dm3] 2L_7620551_SNP [dm6]	C	T	1.172e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7161053	2R_7161053_SNP [dm3] 2R_11273548_SNP [dm6]	G	T	1.177e^-4	0.783	UPSTREAM Cpr47Ef DOWNSTREAM TpnC47D INTERGENIC	TF binding site mE1_TFBS_cad
3L	9113360	3L_9113360_SNP [dm3] 3L_9120260_SNP [dm6]	A	T	1.188e^-4	0.783	INTRON bol
2L	6500282	2L_6500282_SNP [dm3] 2L_6500282_SNP [dm6]	G	T	1.189e^-4	0.783	INTRON CG31637
X	16894075	X_16894075_SNP [dm3] X_17000042_SNP [dm6]	C	T	1.190e^-4	0.783	INTRON CG45002
X	16622701	X_16622701_SNP [dm3] X_16728668_SNP [dm6]	T	C	1.200e^-4	0.783	SPLICE_SITE_REGION CG9634 INTRON CG9634
2L	10086877	2L_10086877_SNP [dm3] 2L_10086877_SNP [dm6]	C	A	1.200e^-4	0.783	INTRON CG44153
2L	10503355	2L_10503355_SNP [dm3] 2L_10503355_SNP [dm6]	T	A	1.205e^-4	0.783	INTRON Myo31DF
2L	4022931	2L_4022931_SNP [dm3] 2L_4022931_SNP [dm6]	C	T	1.210e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27133371	3R_27133371_SNP [dm3] 3R_31307649_SNP [dm6]	T	A	1.212e^-4	0.783	INTERGENIC
3L	11211403	3L_11211403_SNP [dm3] 3L_11218303_SNP [dm6]	C	A	1.222e^-4	0.783	INTRON CG42671
2R	13747302	2R_13747302_SNP [dm3] 2R_17859797_SNP [dm6]	T	C	1.224e^-4	0.783	UTR_3_PRIME olf186-F UPSTREAM CG14490
2R	15490622	2R_15490622_SNP [dm3] 2R_19603117_SNP [dm6]	T	C	1.227e^-4	0.783	UPSTREAM CR44473 INTRON sm
X	5870568	X_5870568_SNP [dm3] X_5976535_SNP [dm6]	C	T	1.233e^-4	0.783	INTRON Grip
3R	2838558	3R_2838558_DEL [dm3] 3R_7012836_DEL [dm6]	ATTA	A	1.240e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9726623	3L_9726623_SNP [dm3] 3L_9733523_SNP [dm6]	T	G	1.240e^-4	0.783	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	9726624	3L_9726624_SNP [dm3] 3L_9733524_SNP [dm6]	A	T	1.240e^-4	0.783	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3R	15340722	3R_15340722_SNP [dm3] 3R_19515000_SNP [dm6]	G	C	1.243e^-4	0.783	INTRON Dys
X	1888777	X_1888777_INS [dm3] X_1994744_INS [dm6]	A	AAGCAAA	1.255e^-4	0.783	CODON_INSERTION Hr4 INTRON Hr4
2L	15262327	2L_15262327_INS [dm3] 2L_15262327_INS [dm6]	T	TGGATGT	1.263e^-4	0.783	DOWNSTREAM yuri INTRON yuri
3R	18482305	3R_18482305_SNP [dm3] 3R_22656583_SNP [dm6]	G	A	1.269e^-4	0.783	INTRON CG45058
X	1172651	X_1172651_SNP [dm3] X_1278618_SNP [dm6]	T	A	1.270e^-4	0.783	INTERGENIC
2L	1611278	2L_1611278_SNP [dm3] 2L_1611278_SNP [dm6]	T	C	1.271e^-4	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2560546	3R_2560546_SNP [dm3] 3R_6734824_SNP [dm6]	A	T	1.271e^-4	0.783	INTRON pb	TF binding site BDTNP1_TFBS_twi
2L	4827236	2L_4827236_SNP [dm3] 2L_4827236_SNP [dm6]	C	T	1.275e^-4	0.783	SYNONYMOUS_CODING CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12451188	2L_12451188_SNP [dm3] 2L_12451188_SNP [dm6]	G	A	1.277e^-4	0.783	DOWNSTREAM CG5418 INTRON Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16677083	3L_16677083_SNP [dm3] 3L_16683983_SNP [dm6]	A	G	1.284e^-4	0.783	INTRON Lasp & 1 other
3L	3430790	3L_3430790_SNP [dm3] 3L_3430790_SNP [dm6]	C	G	1.294e^-4	0.783	INTRON eIF5B
X	13210498	X_13210498_SNP [dm3] X_13316465_SNP [dm6]	C	A	1.299e^-4	0.783	INTRON IP3K2
2L	2880858	2L_2880858_SNP [dm3] 2L_2880858_SNP [dm6]	T	A	1.306e^-4	0.783	UTR_3_PRIME NTPase DOWNSTREAM betaggt-II
2R	6450675	2R_6450675_SNP [dm3] 2R_10563170_SNP [dm6]	C	A	1.308e^-4	0.783	INTRON psq	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	16522207	X_16522207_SNP [dm3] X_16628174_SNP [dm6]	G	A	1.314e^-4	0.783	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
3L	2468372	3L_2468372_SNP [dm3] 3L_2468372_SNP [dm6]	G	A	1.316e^-4	0.783	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
X	13454103	X_13454103_SNP [dm3] X_13560070_SNP [dm6]	G	A	1.328e^-4	0.783	INTERGENIC
X	8091583	X_8091583_SNP [dm3] X_8197550_SNP [dm6]	G	A	1.338e^-4	0.783	INTRON sdt
3R	3475583	3R_3475583_SNP [dm3] 3R_7649861_SNP [dm6]	A	T	1.342e^-4	0.783	INTERGENIC
3L	8499567	3L_8499567_SNP [dm3] 3L_8506467_SNP [dm6]	T	G	1.345e^-4	0.783	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13744184	2R_13744184_SNP [dm3] 2R_17856679_SNP [dm6]	G	T	1.352e^-4	0.783	UTR_5_PRIME olf186-F INTRON olf186-F
2L	4789824	2L_4789824_SNP [dm3] 2L_4789824_SNP [dm6]	C	T	1.357e^-4	0.783	INTRON CG15630
3R	27526803	3R_27526803_DEL [dm3] 3R_31701081_DEL [dm6]	TACATATCTGTGCGGCCT...	T	1.360e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3434948	3L_3434948_SNP [dm3] 3L_3434948_SNP [dm6]	T	A	1.366e^-4	0.783	INTRON eIF5B
X	22078047	X_22078047_SNP [dm3] X_22676211_SNP [dm6]	C	T	1.367e^-4	0.783	INTRON CR44997
3L	5434970	3L_5434970_SNP [dm3] 3L_5441870_SNP [dm6]	G	C	1.368e^-4	0.783	UTR_3_PRIME CG34391
3L	18839097	3L_18839097_SNP [dm3] 3L_18845997_SNP [dm6]	A	G	1.371e^-4	0.783	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8865727	3L_8865727_SNP [dm3] 3L_8872627_SNP [dm6]	C	T	1.376e^-4	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
2R	17758846	2R_17758846_SNP [dm3] 2R_21871341_SNP [dm6]	A	T	1.378e^-4	0.783	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	9113339	3L_9113339_SNP [dm3] 3L_9120239_SNP [dm6]	C	T	1.382e^-4	0.783	INTRON bol
2L	5636150	2L_5636150_SNP [dm3] 2L_5636150_SNP [dm6]	C	T	1.383e^-4	0.783	INTRON CG31646
2L	20849280	2L_20849280_SNP [dm3] 2L_20849280_SNP [dm6]	A	G	1.384e^-4	0.783	UPSTREAM CG14402 DOWNSTREAM CG31676 INTERGENIC
3R	18482303	3R_18482303_SNP [dm3] 3R_22656581_SNP [dm6]	A	T	1.385e^-4	0.783	INTRON CG45058
3R	3075323	3R_3075323_SNP [dm3] 3R_7249601_SNP [dm6]	C	T	1.390e^-4	0.783	UTR_5_PRIME CG1227 UPSTREAM CG10050 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19716771	2R_19716771_SNP [dm3] 2R_23829248_SNP [dm6]	A	G	1.398e^-4	0.783	INTRON CG5549
3L	18935059	3L_18935059_SNP [dm3] 3L_18941959_SNP [dm6]	T	C	1.401e^-4	0.783	INTRON CG32204
3L	18490733	3L_18490733_SNP [dm3] 3L_18497633_SNP [dm6]	G	A	1.416e^-4	0.783	INTRON AstC-R2	TF binding site BDTNP1_TFBS_twi
3L	18931032	3L_18931032_SNP [dm3] 3L_18937932_SNP [dm6]	G	T	1.417e^-4	0.783	INTRON CG32204
2R	12625765	2R_12625765_SNP [dm3] 2R_16738260_SNP [dm6]	A	T	1.448e^-4	0.783	UPSTREAM CG43104 EXON CR44464	TF binding site mE1_TFBS_cad
2L	15226425	2L_15226425_SNP [dm3] 2L_15226425_SNP [dm6]	G	C	1.463e^-4	0.783	INTERGENIC
2L	7631175	2L_7631175_SNP [dm3] 2L_7631175_SNP [dm6]	C	A	1.467e^-4	0.783	INTERGENIC
X	14300883	X_14300883_SNP [dm3] X_14406850_SNP [dm6]	C	G	1.469e^-4	0.783	INTRON dpr8
3L	12176486	3L_12176486_SNP [dm3] 3L_12183386_SNP [dm6]	T	G	1.483e^-4	0.783	DOWNSTREAM CAH2 INTERGENIC
2L	885547	2L_885547_SNP [dm3] 2L_885547_SNP [dm6]	G	T	1.495e^-4	0.783	UPSTREAM CG15824 INTERGENIC
3L	9113362	3L_9113362_SNP [dm3] 3L_9120262_SNP [dm6]	C	T	1.496e^-4	0.783	INTRON bol
2L	20755631	2L_20755631_SNP [dm3] 2L_20755631_SNP [dm6]	C	G	1.504e^-4	0.783	SYNONYMOUS_CODING CG9323 DOWNSTREAM Ns4
2L	17778249	2L_17778249_DEL [dm3] 2L_17778249_DEL [dm6]	AT	C	1.506e^-4	0.783	UTR_5_PRIME CadN	TF binding site mE1_TFBS_Trl
2R	17605582	2R_17605582_SNP [dm3] 2R_21718077_SNP [dm6]	G	A	1.506e^-4	0.783	SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6832474	2R_6832474_SNP [dm3] 2R_10944969_SNP [dm6]	G	A	1.508e^-4	0.783	INTERGENIC
3R	2509118	3R_2509118_SNP [dm3] 3R_6683396_SNP [dm6]	C	T	1.520e^-4	0.783	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	993775	2L_993775_SNP [dm3] 2L_993775_SNP [dm6]	C	G	1.523e^-4	0.783	INTERGENIC
2R	6181500	2R_6181500_SNP [dm3] 2R_10293995_SNP [dm6]	C	T	1.533e^-4	0.783	INTRON CAP	TF binding site mE1_TFBS_sens
3L	8503968	3L_8503968_SNP [dm3] 3L_8510868_SNP [dm6]	A	G	1.533e^-4	0.783	SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
3L	4680606	3L_4680606_SNP [dm3] 3L_4680606_SNP [dm6]	A	G	1.537e^-4	0.783	INTRON axo	TF binding site BDTNP1_TFBS_dl
2R	17110488	2R_17110488_SNP [dm3] 2R_21222983_SNP [dm6]	T	C	1.537e^-4	0.783	INTRON ASPP	TF binding site mE1_TFBS_cad
3L	18936435	3L_18936435_SNP [dm3] 3L_18943335_SNP [dm6]	C	G	1.545e^-4	0.783	INTRON CG32204
X	18560021	X_18560021_SNP [dm3] X_18665988_SNP [dm6]	C	T	1.547e^-4	0.783	UPSTREAM CR45514 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19122055	3L_19122055_SNP [dm3] 3L_19128955_SNP [dm6]	T	C	1.553e^-4	0.783	SYNONYMOUS_CODING Spn75F INTRON CG14082	TF binding site mE1_TFBS_HSA
3R	3832127	3R_3832127_SNP [dm3] 3R_8006405_SNP [dm6]	C	T	1.559e^-4	0.783	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
2R	13596745	2R_13596745_SNP [dm3] 2R_17709240_SNP [dm6]	G	T	1.565e^-4	0.783	UPSTREAM CG6424 INTRON CG6424
2L	18558903	2L_18558903_SNP [dm3] 2L_18558903_SNP [dm6]	T	G	1.566e^-4	0.783	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12361933	2L_12361933_SNP [dm3] 2L_12361933_SNP [dm6]	C	T	1.567e^-4	0.783	INTRON bru-2
3R	3092980	3R_3092980_SNP [dm3] 3R_7267258_SNP [dm6]	T	C	1.568e^-4	0.783	INTRON Syt4	TF binding site BDTNP1_TFBS_twi
3L	12328119	3L_12328119_SNP [dm3] 3L_12335019_SNP [dm6]	T	C	1.572e^-4	0.783	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3L	2465503	3L_2465503_SNP [dm3] 3L_2465503_SNP [dm6]	A	T	1.580e^-4	0.783	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
X	18706381	X_18706381_SNP [dm3] X_18812348_SNP [dm6]	A	G	1.586e^-4	0.783	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC
3R	14440037	3R_14440037_SNP [dm3] 3R_18614315_SNP [dm6]	T	G	1.594e^-4	0.783	INTRON qin & 1 other
X	1909864	X_1909864_DEL [dm3] X_2015831_DEL [dm6]	CAGTCAC	C	1.595e^-4	0.783		TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25158858	3R_25158858_SNP [dm3] 3R_29333136_SNP [dm6]	A	G	1.598e^-4	0.783	INTERGENIC
3R	18482279	3R_18482279_SNP [dm3] 3R_22656557_SNP [dm6]	T	C	1.600e^-4	0.783	INTRON CG45058
3R	18482301	3R_18482301_SNP [dm3] 3R_22656579_SNP [dm6]	G	T	1.600e^-4	0.783	INTRON CG45058
X	3792314	X_3792314_SNP [dm3] X_3898281_SNP [dm6]	G	A	1.602e^-4	0.783	INTRON CG42541
2L	11675488	2L_11675488_SNP [dm3] 2L_11675488_SNP [dm6]	C	G	1.603e^-4	0.783	INTERGENIC
3R	10267514	3R_10267514_SNP [dm3] 3R_14441792_SNP [dm6]	C	A	1.604e^-4	0.783	INTRON cv-c
2L	21902043	2L_21902043_SNP [dm3] 2L_21902043_SNP [dm6]	C	A	1.626e^-4	0.783	UPSTREAM CG1421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6193053	X_6193053_SNP [dm3] X_6299020_SNP [dm6]	G	A	1.632e^-4	0.783	DOWNSTREAM CG12219 & 1 other INTERGENIC
2L	7228556	2L_7228556_SNP [dm3] 2L_7228556_SNP [dm6]	G	A	1.635e^-4	0.783	NON_SYNONYMOUS_CODING CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_da
2R	14342099	2R_14342099_SNP [dm3] 2R_18454594_SNP [dm6]	G	T	1.642e^-4	0.783	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14080545	2R_14080545_SNP [dm3] 2R_18193040_SNP [dm6]	A	T	1.643e^-4	0.783	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17895585	2R_17895585_INS [dm3] 2R_22008080_INS [dm6]	T	TTTCT	1.646e^-4	0.783	INTRON CG34370	TF binding site mE1_TFBS_HSA
3L	12482732	3L_12482732_SNP [dm3] 3L_12489632_SNP [dm6]	A	C	1.650e^-4	0.783	UPSTREAM CR45681 INTRON CG10660	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9465312	X_9465312_SNP [dm3] X_9571279_SNP [dm6]	T	C	1.655e^-4	0.783	SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
X	16592285	X_16592285_SNP [dm3] X_16698252_SNP [dm6]	A	T	1.657e^-4	0.783	DOWNSTREAM CG9676 INTRON CG4678
3R	15139391	3R_15139391_SNP [dm3] 3R_19313669_SNP [dm6]	C	A	1.657e^-4	0.783	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
2L	6127967	2L_6127967_SNP [dm3] 2L_6127967_SNP [dm6]	C	A	1.658e^-4	0.783	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18074235	3L_18074235_SNP [dm3] 3L_18081135_SNP [dm6]	A	G	1.667e^-4	0.783	EXON CR43253
2R	13995405	2R_13995405_SNP [dm3] 2R_18107900_SNP [dm6]	T	G	1.667e^-4	0.783	INTRON CG5756
2R	10708175	2R_10708175_SNP [dm3] 2R_14820670_SNP [dm6]	A	C	1.667e^-4	0.783	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	3084496	3R_3084496_SNP [dm3] 3R_7258774_SNP [dm6]	C	A	1.669e^-4	0.783	INTRON Gld
3L	19864101	3L_19864101_SNP [dm3] 3L_19871001_SNP [dm6]	G	T	1.674e^-4	0.783	UTR_5_PRIME Rab8 UPSTREAM CG8334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5636159	2L_5636159_SNP [dm3] 2L_5636159_SNP [dm6]	A	T	1.675e^-4	0.783	INTRON CG31646
2L	3685668	2L_3685668_SNP [dm3] 2L_3685668_SNP [dm6]	G	A	1.676e^-4	0.783	INTRON CG34340
3R	15767667	3R_15767667_DEL [dm3] 3R_19941945_DEL [dm6]	AT	A	1.683e^-4	0.783	INTRON Hs6st
3R	21870371	3R_21870371_SNP [dm3] 3R_26044649_SNP [dm6]	A	G	1.685e^-4	0.783	INTRON gro
2R	18146457	2R_18146457_SNP [dm3] 2R_22258952_SNP [dm6]	C	T	1.690e^-4	0.783	INTRON dve
3L	18730160	3L_18730160_DEL [dm3] 3L_18737060_DEL [dm6]	TTCATAATTCATCACTTAAA...	T	1.701e^-4	0.783	INTERGENIC
2L	20657493	2L_20657493_SNP [dm3] 2L_20657493_SNP [dm6]	C	G	1.714e^-4	0.783	INTRON CG2614	TF binding site mE1_TFBS_sens
3L	5777974	3L_5777974_SNP [dm3] 3L_5784874_SNP [dm6]	A	G	1.716e^-4	0.783	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
2L	12020607	2L_12020607_SNP [dm3] 2L_12020607_SNP [dm6]	T	C	1.716e^-4	0.783	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19998492	2L_19998492_SNP [dm3] 2L_19998492_SNP [dm6]	G	A	1.729e^-4	0.783	INTRON CG43861
2R	11019374	2R_11019374_SNP [dm3] 2R_15131869_SNP [dm6]	A	C	1.732e^-4	0.783	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16895374	X_16895374_SNP [dm3] X_17001341_SNP [dm6]	T	A	1.734e^-4	0.783	INTRON CG45002
2L	15386965	2L_15386965_SNP [dm3] 2L_15386965_SNP [dm6]	C	T	1.743e^-4	0.783	INTERGENIC
3R	3075312	3R_3075312_SNP [dm3] 3R_7249590_SNP [dm6]	A	T	1.743e^-4	0.783	UTR_5_PRIME CG1227 UPSTREAM CG10050 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10945098	2L_10945098_SNP [dm3] 2L_10945098_SNP [dm6]	A	G	1.750e^-4	0.783	INTRON dpr2
3R	18482256	3R_18482256_SNP [dm3] 3R_22656534_SNP [dm6]	C	T	1.750e^-4	0.783	INTRON CG45058
3R	18482259	3R_18482259_SNP [dm3] 3R_22656537_SNP [dm6]	C	G	1.750e^-4	0.783	INTRON CG45058
3R	18482274	3R_18482274_SNP [dm3] 3R_22656552_SNP [dm6]	T	A	1.750e^-4	0.783	INTRON CG45058
3R	18482280	3R_18482280_SNP [dm3] 3R_22656558_SNP [dm6]	T	A	1.750e^-4	0.783	INTRON CG45058
3R	18482282	3R_18482282_DEL [dm3] 3R_22656560_DEL [dm6]	TG	A	1.750e^-4	0.783	INTRON CG45058
3R	18482285	3R_18482285_MNP [dm3] 3R_22656563_MNP [dm6]	TGC	CCA	1.750e^-4	0.783	INTRON CG45058
3R	18482292	3R_18482292_INS [dm3] 3R_22656570_INS [dm6]	T	TC	1.750e^-4	0.783	INTRON CG45058
X	18560058	X_18560058_SNP [dm3] X_18666025_SNP [dm6]	C	T	1.757e^-4	0.783	UPSTREAM CR45514 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18482246	3R_18482246_SNP [dm3] 3R_22656524_SNP [dm6]	G	C	1.761e^-4	0.783	INTRON CG45058
X	13210499	X_13210499_SNP [dm3] X_13316466_SNP [dm6]	G	T	1.768e^-4	0.783	INTRON IP3K2
X	1173546	X_1173546_SNP [dm3] X_1279513_SNP [dm6]	G	C	1.776e^-4	0.783	INTERGENIC
3L	8797296	3L_8797296_SNP [dm3] 3L_8804196_SNP [dm6]	C	T	1.780e^-4	0.783	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
X	3015747	X_3015747_INS [dm3] X_3121714_INS [dm6]	G	ACACTGCTGGCTATA...	1.788e^-4	0.783	INTRON kirre
2R	14077282	2R_14077282_DEL [dm3] 2R_18189777_DEL [dm6]	TAAAGATAGTGAATTTTAAG...	T	1.793e^-4	0.783	DOWNSTREAM CG14500 INTRON CG33958
2R	14077304	2R_14077304_SNP [dm3] 2R_18189799_SNP [dm6]	G	C	1.793e^-4	0.783	DOWNSTREAM CG14500 INTRON CG33958
3L	18847348	3L_18847348_SNP [dm3] 3L_18854248_SNP [dm6]	A	T	1.796e^-4	0.783	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7629828	2L_7629828_SNP [dm3] 2L_7629828_SNP [dm6]	A	G	1.801e^-4	0.783	INTERGENIC
X	1926646	X_1926646_SNP [dm3] X_2032613_SNP [dm6]	G	A	1.802e^-4	0.783	INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	17687064	2R_17687064_SNP [dm3] 2R_21799559_SNP [dm6]	G	C	1.803e^-4	0.783	UTR_3_PRIME CG4386 UPSTREAM CG18735
2L	1611307	2L_1611307_SNP [dm3] 2L_1611307_SNP [dm6]	C	T	1.803e^-4	0.783	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	9154877	2R_9154877_SNP [dm3] 2R_13267372_SNP [dm6]	T	G	1.803e^-4	0.783	DOWNSTREAM Dh31-R INTERGENIC
X	7369802	X_7369802_SNP [dm3] X_7475769_SNP [dm6]	T	C	1.806e^-4	0.783	INTERGENIC
X	15561682	X_15561682_SNP [dm3] X_15667649_SNP [dm6]	C	T	1.809e^-4	0.783	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	18931051	3L_18931051_SNP [dm3] 3L_18937951_SNP [dm6]	A	G	1.809e^-4	0.783	INTRON CG32204
3L	10899272	3L_10899272_SNP [dm3] 3L_10906172_SNP [dm6]	T	C	1.812e^-4	0.783	INTERGENIC
2L	8143538	2L_8143538_SNP [dm3] 2L_8143538_SNP [dm6]	T	C	1.824e^-4	0.783	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16175596	2R_16175596_SNP [dm3] 2R_20288091_SNP [dm6]	C	T	1.837e^-4	0.783	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3R	18482298	3R_18482298_SNP [dm3] 3R_22656576_SNP [dm6]	T	C	1.846e^-4	0.783	INTRON CG45058
2R	17687956	2R_17687956_SNP [dm3] 2R_21800451_SNP [dm6]	T	G	1.853e^-4	0.783	SYNONYMOUS_CODING CG4386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17223291	3L_17223291_DEL [dm3] 3L_17230191_DEL [dm6]	TA	T	1.855e^-4	0.783	INTRON Rbp6
2R	17110861	2R_17110861_DEL [dm3] 2R_21223356_DEL [dm6]	GAGTGTATG	G	1.877e^-4	0.783	INTRON ASPP
3L	8865775	3L_8865775_INS [dm3] 3L_8872675_INS [dm6]	T	TTC	1.883e^-4	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
2R	5863949	2R_5863949_SNP [dm3] 2R_9976444_SNP [dm6]	G	A	1.886e^-4	0.783	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14933524	2R_14933524_SNP [dm3] 2R_19046019_SNP [dm6]	G	T	1.888e^-4	0.783	INTERGENIC
3R	2240908	3R_2240908_SNP [dm3] 3R_6415186_SNP [dm6]	T	G	1.892e^-4	0.783	INTRON gpp
3R	18482252	3R_18482252_DEL [dm3] 3R_22656530_DEL [dm6]	GAG	T	1.895e^-4	0.783	INTRON CG45058
3L	1876403	3L_1876403_INS [dm3] 3L_1876403_INS [dm6]	C	CA	1.901e^-4	0.783	UPSTREAM dre4 DOWNSTREAM CG13937 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	11674962	2L_11674962_SNP [dm3] 2L_11674962_SNP [dm6]	T	C	1.905e^-4	0.783	INTERGENIC
3R	27487945	3R_27487945_SNP [dm3] 3R_31662223_SNP [dm6]	C	T	1.914e^-4	0.783	UTR_3_PRIME kek6
X	17272585	X_17272585_SNP [dm3] X_17378552_SNP [dm6]	A	G	1.919e^-4	0.783	EXON CR43491
X	18706277	X_18706277_SNP [dm3] X_18812244_SNP [dm6]	T	C	1.932e^-4	0.783	DOWNSTREAM CG7058 INTERGENIC
2R	16055666	2R_16055666_SNP [dm3] 2R_20168161_SNP [dm6]	T	C	1.935e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21182969	X_21182969_SNP [dm3] X_21311942_SNP [dm6]	C	A	1.936e^-4	0.783	INTRON CG1801
3R	14356870	3R_14356870_SNP [dm3] 3R_18531148_SNP [dm6]	C	G	1.940e^-4	0.783	INTRON fru
3L	17438762	3L_17438762_SNP [dm3] 3L_17445662_SNP [dm6]	A	G	1.943e^-4	0.783	UPSTREAM CG18265 INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12092410	3L_12092410_SNP [dm3] 3L_12099310_SNP [dm6]	G	C	1.952e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15439059	2L_15439059_SNP [dm3] 2L_15439059_SNP [dm6]	G	C	1.953e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	13886539	X_13886539_SNP [dm3] X_13992506_SNP [dm6]	G	A	1.956e^-4	0.783	INTERGENIC
X	16894084	X_16894084_SNP [dm3] X_17000051_SNP [dm6]	T	C	1.965e^-4	0.783	INTRON CG45002
X	18719675	X_18719675_SNP [dm3] X_18825642_SNP [dm6]	T	G	1.968e^-4	0.783	NON_SYNONYMOUS_CODING CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5106428	X_5106428_SNP [dm3] X_5212395_SNP [dm6]	A	C	1.968e^-4	0.783	INTRON CG15465 & 1 other
2L	3703743	2L_3703743_SNP [dm3] 2L_3703743_SNP [dm6]	T	A	1.973e^-4	0.783	NON_SYNONYMOUS_CODING CG2816 DOWNSTREAM CR44311 & 1 other
X	18432425	X_18432425_SNP [dm3] X_18538392_SNP [dm6]	A	T	1.974e^-4	0.783	INTRON Bx	TF binding site BDTNP1_TFBS_dl
3L	12157180	3L_12157180_DEL [dm3] 3L_12164080_DEL [dm6]	AA	A	1.975e^-4	0.783	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	1926213	X_1926213_SNP [dm3] X_2032180_SNP [dm6]	C	A	1.978e^-4	0.783	INTRON Actn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	14308870	2L_14308870_SNP [dm3] 2L_14308870_SNP [dm6]	T	C	1.981e^-4	0.783	SYNONYMOUS_CODING wb INTRON wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13884840	3R_13884840_SNP [dm3] 3R_18059118_SNP [dm6]	A	T	1.987e^-4	0.783	INTERGENIC
3R	6738574	3R_6738574_SNP [dm3] 3R_10912852_SNP [dm6]	G	T	1.989e^-4	0.783	INTERGENIC
2R	17111217	2R_17111217_SNP [dm3] 2R_21223712_SNP [dm6]	G	A	1.994e^-4	0.783	SYNONYMOUS_CODING ASPP INTRON ASPP
3R	22878831	3R_22878831_SNP [dm3] 3R_27053109_SNP [dm6]	T	A	1.997e^-4	0.783	INTRON RYa-R
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	1.999e^-4	0.783	INTRON bol
2L	5857935	2L_5857935_SNP [dm3] 2L_5857935_SNP [dm6]	G	A	1.999e^-4	0.783	INTERGENIC
3L	1520198	3L_1520198_SNP [dm3] 3L_1520198_SNP [dm6]	C	T	2.003e^-4	0.783	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
2R	14077434	2R_14077434_SNP [dm3] 2R_18189929_SNP [dm6]	A	G	2.010e^-4	0.783	DOWNSTREAM CG14500 INTRON CG33958
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	2.018e^-4	0.783	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
X	16894076	X_16894076_SNP [dm3] X_17000043_SNP [dm6]	G	A	2.018e^-4	0.783	INTRON CG45002
X	12899388	X_12899388_INS [dm3] X_13005355_INS [dm6]	T	TGTGCGC	2.023e^-4	0.783	UPSTREAM CG15719 INTRON rad
3L	3435181	3L_3435181_SNP [dm3] 3L_3435181_SNP [dm6]	C	T	2.024e^-4	0.783	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
2R	11954467	2R_11954467_SNP [dm3] 2R_16066962_SNP [dm6]	T	C	2.027e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1798511	3L_1798511_SNP [dm3] 3L_1798511_SNP [dm6]	G	A	2.027e^-4	0.783	SYNONYMOUS_CODING CG12020 UPSTREAM Patj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7201899	3L_7201899_SNP [dm3] 3L_7208799_SNP [dm6]	G	T	2.028e^-4	0.783	INTERGENIC
2R	13751327	2R_13751327_SNP [dm3] 2R_17863822_SNP [dm6]	A	C	2.029e^-4	0.783	NON_SYNONYMOUS_CODING thr
2R	2171177	2R_2171177_SNP [dm3] 2R_6283672_SNP [dm6]	C	T	2.041e^-4	0.783	INTERGENIC	transposable element FlyBase
2R	9898318	2R_9898318_SNP [dm3] 2R_14010813_SNP [dm6]	C	T	2.046e^-4	0.783	NON_SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo
2L	21902042	2L_21902042_SNP [dm3] 2L_21902042_SNP [dm6]	A	C	2.049e^-4	0.783	UPSTREAM CG1421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16737518	X_16737518_SNP [dm3] X_16843485_SNP [dm6]	G	A	2.052e^-4	0.783	NON_SYNONYMOUS_CODING RSG7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13827057	3L_13827057_SNP [dm3] 3L_13833957_SNP [dm6]	A	G	2.052e^-4	0.783	INTERGENIC
X	1433333	X_1433333_SNP [dm3] X_1539300_SNP [dm6]	T	A	2.062e^-4	0.783	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	21316447	3L_21316447_SNP [dm3] 3L_21323347_SNP [dm6]	C	G	2.062e^-4	0.783	INTRON Rab26
2L	3534742	2L_3534742_SNP [dm3] 2L_3534742_SNP [dm6]	T	C	2.070e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12019270	2R_12019270_SNP [dm3] 2R_16131765_SNP [dm6]	A	G	2.070e^-4	0.783	SYNONYMOUS_CODING spin	TF binding site mE1_TFBS_cad
3L	19860999	3L_19860999_SNP [dm3] 3L_19867899_SNP [dm6]	C	T	2.078e^-4	0.783	UTR_3_PRIME Rab8 DOWNSTREAM Rab8	TF binding site mE1_TFBS_cad
2L	9300591	2L_9300591_DEL [dm3] 2L_9300591_DEL [dm6]	CC	C	2.080e^-4	0.783	UTR_3_PRIME Ggamma30A
2L	3441803	2L_3441803_SNP [dm3] 2L_3441803_SNP [dm6]	G	A	2.093e^-4	0.783	INTERGENIC
3L	12165603	3L_12165603_SNP [dm3] 3L_12172503_SNP [dm6]	T	G	2.095e^-4	0.783	INTRON Rh7
2R	12608921	2R_12608921_SNP [dm3] 2R_16721416_SNP [dm6]	C	T	2.108e^-4	0.783	INTRON CG30463	TF binding site mE1_TFBS_inv
2L	5561254	2L_5561254_SNP [dm3] 2L_5561254_SNP [dm6]	A	G	2.111e^-4	0.783	NON_SYNONYMOUS_CODING GluRIIB
3L	18730191	3L_18730191_DEL [dm3] 3L_18737091_DEL [dm6]	GT	A	2.111e^-4	0.783	INTERGENIC
3L	8079817	3L_8079817_SNP [dm3] 3L_8086717_SNP [dm6]	T	A	2.115e^-4	0.783	DOWNSTREAM CG7565 INTRON Ect4
2R	11460690	2R_11460690_SNP [dm3] 2R_15573185_SNP [dm6]	T	C	2.115e^-4	0.783	UTR_3_PRIME CG8204 DOWNSTREAM CG30466	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_sens mE1_TFBS_Ubx
2L	11331705	2L_11331705_SNP [dm3] 2L_11331705_SNP [dm6]	A	T	2.117e^-4	0.783	DOWNSTREAM CR44584 INTERGENIC
2L	7791100	2L_7791100_SNP [dm3] 2L_7791100_SNP [dm6]	C	T	2.120e^-4	0.783	UPSTREAM CG7149 DOWNSTREAM LKR INTERGENIC
3R	5141172	3R_5141172_INS [dm3] 3R_9315450_INS [dm6]	T	TAAGTATA	2.135e^-4	0.783	INTRON CG8861
3L	11211412	3L_11211412_SNP [dm3] 3L_11218312_SNP [dm6]	T	A	2.137e^-4	0.783	INTRON CG42671
2R	19259506	2R_19259506_SNP [dm3] 2R_23371983_SNP [dm6]	G	A	2.143e^-4	0.783	SYNONYMOUS_CODING Golgin245 DOWNSTREAM Ice1
2R	12130911	2R_12130911_SNP [dm3] 2R_16243406_SNP [dm6]	C	T	2.143e^-4	0.783	UTR_3_PRIME CngA
2R	11043821	2R_11043821_SNP [dm3] 2R_15156316_SNP [dm6]	C	A	2.154e^-4	0.783	INTRON igl
3R	3808380	3R_3808380_SNP [dm3] 3R_7982658_SNP [dm6]	C	T	2.160e^-4	0.783	INTRON CG2781
2R	19721597	2R_19721597_SNP [dm3] 2R_23834074_SNP [dm6]	C	T	2.162e^-4	0.783	INTRON CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19716271	2R_19716271_DEL [dm3] 2R_23828748_DEL [dm6]	CCCCCGTGGTGCTGC...	C	2.168e^-4	0.783	INTRON CG5549
3L	9869381	3L_9869381_SNP [dm3] 3L_9876281_SNP [dm6]	G	A	2.177e^-4	0.783	EXON CR45406
3R	20808131	3R_20808131_SNP [dm3] 3R_24982409_SNP [dm6]	G	A	2.178e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	20474889	2L_20474889_SNP [dm3] 2L_20474889_SNP [dm6]	C	T	2.187e^-4	0.783	INTRON CR44980
2R	8924024	2R_8924024_SNP [dm3] 2R_13036519_SNP [dm6]	C	A	2.196e^-4	0.783	INTERGENIC
2L	7364933	2L_7364933_SNP [dm3] 2L_7364933_SNP [dm6]	C	T	2.196e^-4	0.783	SYNONYMOUS_CODING Wnt10
X	16894085	X_16894085_SNP [dm3] X_17000052_SNP [dm6]	A	C	2.202e^-4	0.783	INTRON CG45002
2L	12451143	2L_12451143_SNP [dm3] 2L_12451143_SNP [dm6]	A	T	2.208e^-4	0.783	DOWNSTREAM CG5418 INTRON Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20642574	2L_20642574_SNP [dm3] 2L_20642574_SNP [dm6]	G	T	2.208e^-4	0.783	SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
3L	9935347	3L_9935347_SNP [dm3] 3L_9942247_SNP [dm6]	T	C	2.211e^-4	0.783	INTRON CG34356
2R	17110968	2R_17110968_SNP [dm3] 2R_21223463_SNP [dm6]	G	C	2.212e^-4	0.783	INTRON ASPP
3R	21866993	3R_21866993_SNP [dm3] 3R_26041271_SNP [dm6]	A	C	2.227e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9486390	2L_9486390_SNP [dm3] 2L_9486390_SNP [dm6]	A	G	2.231e^-4	0.783	INTERGENIC
3L	17223284	3L_17223284_DEL [dm3] 3L_17230184_DEL [dm6]	AAATA	C	2.239e^-4	0.783	INTRON Rbp6
3R	2240907	3R_2240907_SNP [dm3] 3R_6415185_SNP [dm6]	T	G	2.242e^-4	0.783	INTRON gpp
X	17272591	X_17272591_SNP [dm3] X_17378558_SNP [dm6]	C	T	2.246e^-4	0.783	EXON CR43491
3R	13816508	3R_13816508_SNP [dm3] 3R_17990786_SNP [dm6]	T	C	2.247e^-4	0.783	INTRON cpo
2L	19998506	2L_19998506_SNP [dm3] 2L_19998506_SNP [dm6]	G	A	2.248e^-4	0.783	INTRON CG43861
2R	16055655	2R_16055655_SNP [dm3] 2R_20168150_SNP [dm6]	A	C	2.251e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15835042	2R_15835042_SNP [dm3] 2R_19947537_SNP [dm6]	C	A	2.262e^-4	0.783	NON_SYNONYMOUS_CODING CG30447 UPSTREAM CG42691
2L	12681290	2L_12681290_SNP [dm3] 2L_12681290_SNP [dm6]	G	A	2.266e^-4	0.783	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14271815	2R_14271815_SNP [dm3] 2R_18384310_SNP [dm6]	A	T	2.268e^-4	0.783	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
X	13090599	X_13090599_SNP [dm3] X_13196566_SNP [dm6]	T	G	2.273e^-4	0.783	INTRON sno	TF binding site mE1_TFBS_sens
3R	17953284	3R_17953284_SNP [dm3] 3R_22127562_SNP [dm6]	C	T	2.275e^-4	0.783	INTRON CG42390
3R	22849190	3R_22849190_SNP [dm3] 3R_27023468_SNP [dm6]	A	G	2.284e^-4	0.783	UPSTREAM CG6277 INTRON RYa-R
2R	16175408	2R_16175408_SNP [dm3] 2R_20287903_SNP [dm6]	C	A	2.295e^-4	0.783	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	16176606	2R_16176606_SNP [dm3] 2R_20289101_SNP [dm6]	C	G	2.296e^-4	0.783	SYNONYMOUS_CODING Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13572269	3R_13572269_SNP [dm3] 3R_17746547_SNP [dm6]	C	T	2.297e^-4	0.783	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3L	10362853	3L_10362853_SNP [dm3] 3L_10369753_SNP [dm6]	C	T	2.299e^-4	0.783	INTERGENIC
X	13443506	X_13443506_SNP [dm3] X_13549473_SNP [dm6]	T	C	2.300e^-4	0.783	INTERGENIC
X	13454085	X_13454085_SNP [dm3] X_13560052_SNP [dm6]	A	T	2.305e^-4	0.783	INTERGENIC
X	6791116	X_6791116_SNP [dm3] X_6897083_SNP [dm6]	T	C	2.308e^-4	0.783	INTERGENIC
2R	12130908	2R_12130908_SNP [dm3] 2R_16243403_SNP [dm6]	T	C	2.308e^-4	0.783	UTR_3_PRIME CngA
3L	16854189	3L_16854189_SNP [dm3] 3L_16861089_SNP [dm6]	T	A	2.317e^-4	0.783	UPSTREAM CG13029 DOWNSTREAM sinah INTRON Rh4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17163719	2L_17163719_SNP [dm3] 2L_17163719_SNP [dm6]	C	T	2.317e^-4	0.783	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3R	24413337	3R_24413337_SNP [dm3] 3R_28587615_SNP [dm6]	A	T	2.318e^-4	0.783	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15980261	3L_15980261_SNP [dm3] 3L_15987161_SNP [dm6]	A	G	2.319e^-4	0.783	SYNONYMOUS_CODING DNApol-delta UPSTREAM CR45446	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3820806	3L_3820806_SNP [dm3] 3L_3820806_SNP [dm6]	G	T	2.322e^-4	0.783	INTRON enc
X	16895354	X_16895354_SNP [dm3] X_17001321_SNP [dm6]	G	A	2.325e^-4	0.783	INTRON CG45002
3R	3174083	3R_3174083_SNP [dm3] 3R_7348361_SNP [dm6]	A	T	2.342e^-4	0.783	DOWNSTREAM nxf4 & 1 other INTERGENIC
3R	24413345	3R_24413345_SNP [dm3] 3R_28587623_SNP [dm6]	A	C	2.347e^-4	0.783	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	14440093	3R_14440093_INS [dm3] 3R_18614371_INS [dm6]	GC	CGATTTCCA	2.348e^-4	0.783	INTRON qin & 1 other
2L	1102277	2L_1102277_SNP [dm3] 2L_1102277_SNP [dm6]	C	T	2.356e^-4	0.783	DOWNSTREAM mtRNApol INTRON CG4629
2R	11672447	2R_11672447_SNP [dm3] 2R_15784942_SNP [dm6]	C	A	2.369e^-4	0.783	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	896915	2L_896915_SNP [dm3] 2L_896915_SNP [dm6]	T	A	2.372e^-4	0.783	DOWNSTREAM CR45348 INTERGENIC
3R	3233711	3R_3233711_SNP [dm3] 3R_7407989_SNP [dm6]	C	T	2.392e^-4	0.783	INTRON Ir84a
2R	2055963	2R_2055963_DEL [dm3] 2R_6168458_DEL [dm6]	AT	A	2.393e^-4	0.783	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	12794866	2R_12794866_SNP [dm3] 2R_16907361_SNP [dm6]	A	T	2.397e^-4	0.783	INTERGENIC
X	475350	X_475350_SNP [dm3] X_581317_SNP [dm6]	G	A	2.400e^-4	0.783	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18829842	3L_18829842_SNP [dm3] 3L_18836742_SNP [dm6]	A	T	2.404e^-4	0.783	INTRON Indy	TF binding site mE1_TFBS_zfh1
3L	12165595	3L_12165595_SNP [dm3] 3L_12172495_SNP [dm6]	G	C	2.404e^-4	0.783	INTRON Rh7
3L	15249825	3L_15249825_INS [dm3] 3L_15256725_INS [dm6]	T	TACT	2.412e^-4	0.783	INTERGENIC
2L	7295211	2L_7295211_SNP [dm3] 2L_7295211_SNP [dm6]	A	T	2.425e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	3516366	X_3516366_SNP [dm3] X_3622333_SNP [dm6]	G	T	2.425e^-4	0.783	INTRON AstA-R1
3L	12165678	3L_12165678_SNP [dm3] 3L_12172578_SNP [dm6]	T	A	2.428e^-4	0.783	INTRON Rh7
X	468173	X_468173_INS [dm3] X_574140_INS [dm6]	C	CT	2.430e^-4	0.783	INTRON Appl	TF binding site mE1_TFBS_chinmo
2L	1632890	2L_1632890_SNP [dm3] 2L_1632890_SNP [dm6]	T	C	2.431e^-4	0.783	INTERGENIC
3R	2810714	3R_2810714_SNP [dm3] 3R_6984992_SNP [dm6]	G	A	2.433e^-4	0.783	INTRON Antp	TF binding site mE1_TFBS_HSA
3L	14992231	3L_14992231_SNP [dm3] 3L_14999131_SNP [dm6]	G	A	2.443e^-4	0.783	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11142396	3L_11142396_SNP [dm3] 3L_11149296_SNP [dm6]	A	G	2.457e^-4	0.783	DOWNSTREAM CG6216 INTRON CG32082
3L	11807328	3L_11807328_SNP [dm3] 3L_11814228_SNP [dm6]	G	A	2.467e^-4	0.783	SYNONYMOUS_CODING CG42255
2L	13125563	2L_13125563_SNP [dm3] 2L_13125563_SNP [dm6]	G	A	2.472e^-4	0.783	INTERGENIC
3R	26130684	3R_26130684_SNP [dm3] 3R_30304962_SNP [dm6]	G	A	2.474e^-4	0.783	DOWNSTREAM CG34300 INTRON hdc
3R	10782231	3R_10782231_SNP [dm3] 3R_14956509_SNP [dm6]	C	G	2.478e^-4	0.783	INTERGENIC
3L	18119487	3L_18119487_SNP [dm3] 3L_18126387_SNP [dm6]	T	C	2.483e^-4	0.783	INTERGENIC
3L	7893603	3L_7893603_SNP [dm3] 3L_7900503_SNP [dm6]	C	T	2.489e^-4	0.783	SYNONYMOUS_CODING pbl INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19714902	2R_19714902_SNP [dm3] 2R_23827379_SNP [dm6]	C	A	2.490e^-4	0.783	INTRON CG5549	TF binding site mE1_TFBS_inv
3L	12225041	3L_12225041_SNP [dm3] 3L_12231941_SNP [dm6]	C	A	2.494e^-4	0.783	INTRON app
2R	20030455	2R_20030455_SNP [dm3] 2R_24142932_SNP [dm6]	T	A	2.499e^-4	0.783	INTRON Dat
3L	3985924	3L_3985924_SNP [dm3] 3L_3985924_SNP [dm6]	A	G	2.501e^-4	0.783	INTRON scrt
3R	16035674	3R_16035674_SNP [dm3] 3R_20209952_SNP [dm6]	T	G	2.501e^-4	0.783	UPSTREAM CG17199 INTRON Nlg4
2R	12434975	2R_12434975_SNP [dm3] 2R_16547470_SNP [dm6]	G	A	2.506e^-4	0.783	INTERGENIC
X	16559163	X_16559163_SNP [dm3] X_16665130_SNP [dm6]	A	G	2.508e^-4	0.783	UPSTREAM CG15865 INTRON r
2R	9375466	2R_9375466_SNP [dm3] 2R_13487961_SNP [dm6]	T	A	2.511e^-4	0.783	INTRON bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10557906	2R_10557906_SNP [dm3] 2R_14670401_SNP [dm6]	C	T	2.513e^-4	0.783	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866 DOWNSTREAM mspo
2L	12829525	2L_12829525_SNP [dm3] 2L_12829525_SNP [dm6]	G	A	2.518e^-4	0.783	INTERGENIC
3L	16684459	3L_16684459_SNP [dm3] 3L_16691359_SNP [dm6]	G	C	2.527e^-4	0.783	INTRON Lasp & 2 others	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	7932023	3L_7932023_SNP [dm3] 3L_7938923_SNP [dm6]	G	T	2.531e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13018739	3L_13018739_SNP [dm3] 3L_13025639_SNP [dm6]	G	T	2.537e^-4	0.783	DOWNSTREAM RpS12 INTRON Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4132082	2L_4132082_DEL [dm3] 2L_4132082_DEL [dm6]	TAATCCAACAGA...	T	2.542e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18560227	X_18560227_SNP [dm3] X_18666194_SNP [dm6]	G	A	2.545e^-4	0.783	EXON CR45514	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12165617	3L_12165617_SNP [dm3] 3L_12172517_SNP [dm6]	C	G	2.545e^-4	0.783	INTRON Rh7
3R	14785026	3R_14785026_INS [dm3] 3R_18959304_INS [dm6]	G	GG	2.564e^-4	0.783	UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
2R	6927149	2R_6927149_SNP [dm3] 2R_11039644_SNP [dm6]	T	C	2.568e^-4	0.783	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18422620	2L_18422620_SNP [dm3] 2L_18422620_SNP [dm6]	T	A	2.575e^-4	0.783	INTERGENIC
3L	11286450	3L_11286450_SNP [dm3] 3L_11293350_SNP [dm6]	A	G	2.577e^-4	0.783	INTRON CG6175
3R	19612729	3R_19612729_SNP [dm3] 3R_23787007_SNP [dm6]	T	A	2.579e^-4	0.783	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	10835716	3R_10835716_SNP [dm3] 3R_15009994_SNP [dm6]	C	T	2.580e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18150051	3L_18150051_SNP [dm3] 3L_18156951_SNP [dm6]	G	T	2.588e^-4	0.783	INTRON CG13699
2L	7201211	2L_7201211_SNP [dm3] 2L_7201211_SNP [dm6]	C	T	2.593e^-4	0.783	INTRON CG4502
3L	9935092	3L_9935092_DEL [dm3] 3L_9941992_DEL [dm6]	TCCCTGCA	T	2.595e^-4	0.783	INTRON CG34356
3L	10362710	3L_10362710_SNP [dm3] 3L_10369610_SNP [dm6]	A	G	2.598e^-4	0.783	INTERGENIC
2R	11457257	2R_11457257_DEL [dm3] 2R_15569752_DEL [dm6]	TT	T	2.600e^-4	0.783	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	14799414	3R_14799414_SNP [dm3] 3R_18973692_SNP [dm6]	T	A	2.605e^-4	0.783	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_Trl
3L	8865766	3L_8865766_SNP [dm3] 3L_8872666_SNP [dm6]	A	T	2.605e^-4	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
X	14107089	X_14107089_SNP [dm3] X_14213056_SNP [dm6]	C	T	2.613e^-4	0.783	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
2R	12807373	2R_12807373_SNP [dm3] 2R_16919868_SNP [dm6]	A	T	2.617e^-4	0.783	INTERGENIC
3L	18074160	3L_18074160_INS [dm3] 3L_18081060_INS [dm6]	T	TA	2.618e^-4	0.783	DOWNSTREAM CR43253 INTERGENIC
3L	3431989	3L_3431989_SNP [dm3] 3L_3431989_SNP [dm6]	C	A	2.637e^-4	0.783	INTRON eIF5B
3L	11625875	3L_11625875_SNP [dm3] 3L_11632775_SNP [dm6]	G	A	2.639e^-4	0.783	INTRON CG32091 EXON CR45158
3R	10118898	3R_10118898_SNP [dm3] 3R_14293176_SNP [dm6]	G	A	2.639e^-4	0.783	INTRON CG12207
3L	21314079	3L_21314079_SNP [dm3] 3L_21320979_SNP [dm6]	A	G	2.640e^-4	0.783	INTRON Rab26	TF binding site BDTNP1_TFBS_dl
3R	13696328	3R_13696328_SNP [dm3] 3R_17870606_SNP [dm6]	G	A	2.644e^-4	0.783	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2R	1849326	2R_1849326_SNP [dm3] 2R_5961821_SNP [dm6]	A	G	2.648e^-4	0.783	INTRON CG7881
3L	12697591	3L_12697591_SNP [dm3] 3L_12704491_SNP [dm6]	T	C	2.658e^-4	0.783	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12171910	3L_12171910_SNP [dm3] 3L_12178810_SNP [dm6]	C	A	2.659e^-4	0.783	INTRON CAH2
X	17364814	X_17364814_SNP [dm3] X_17470781_SNP [dm6]	C	T	2.663e^-4	0.783	INTRON CG43658
X	1924593	X_1924593_SNP [dm3] X_2030560_SNP [dm6]	G	A	2.667e^-4	0.783	SYNONYMOUS_CODING Actn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1923303	X_1923303_SNP [dm3] X_2029270_SNP [dm6]	T	A	2.673e^-4	0.783	UPSTREAM mir-4954 INTRON Actn
2L	7619434	2L_7619434_SNP [dm3] 2L_7619434_SNP [dm6]	C	A	2.674e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20650009	2L_20650009_SNP [dm3] 2L_20650009_SNP [dm6]	T	C	2.683e^-4	0.783	UTR_3_PRIME CG18810 UPSTREAM CG2611 DOWNSTREAM bru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4555206	3L_4555206_SNP [dm3] 3L_4555206_SNP [dm6]	G	A	2.683e^-4	0.783	NON_SYNONYMOUS_CODING CG33777 UPSTREAM CG42540	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	5250864	2R_5250864_SNP [dm3] 2R_9363359_SNP [dm6]	G	T	2.685e^-4	0.783	UPSTREAM CG12158 INTRON CG13954
2R	16174883	2R_16174883_SNP [dm3] 2R_20287378_SNP [dm6]	C	A	2.692e^-4	0.783	UPSTREAM CG34199 & 1 other DOWNSTREAM Cpr56F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16176119	2R_16176119_SNP [dm3] 2R_20288614_SNP [dm6]	T	C	2.696e^-4	0.783	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199
2R	12804451	2R_12804451_SNP [dm3] 2R_16916946_SNP [dm6]	T	G	2.697e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	19721653	2R_19721653_SNP [dm3] 2R_23834130_SNP [dm6]	G	T	2.703e^-4	0.783	INTRON CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8071216	3R_8071216_SNP [dm3] 3R_12245494_SNP [dm6]	A	G	2.706e^-4	0.783	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9359713	3L_9359713_SNP [dm3] 3L_9366613_SNP [dm6]	G	A	2.722e^-4	0.783	SYNONYMOUS_CODING Klp67A UPSTREAM CG4452	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26867567	3R_26867567_SNP [dm3] 3R_31041845_SNP [dm6]	C	T	2.726e^-4	0.783	SYNONYMOUS_CODING CanA1
X	18560191	X_18560191_DEL [dm3] X_18666158_DEL [dm6]	TGAACT	A	2.727e^-4	0.783	EXON CR45514	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13744176	2R_13744176_DEL [dm3] 2R_17856671_DEL [dm6]	AG	C	2.727e^-4	0.783	UTR_5_PRIME olf186-F INTRON olf186-F
2R	13748880	2R_13748880_SNP [dm3] 2R_17861375_SNP [dm6]	G	A	2.731e^-4	0.783	SYNONYMOUS_CODING CG14490 UTR_3_PRIME thr DOWNSTREAM thr & 1 other	TF binding site mE1_TFBS_HSA
3L	16728053	3L_16728053_SNP [dm3] 3L_16734953_SNP [dm6]	A	G	2.734e^-4	0.783	INTRON CG9701
3L	18346395	3L_18346395_SNP [dm3] 3L_18353295_SNP [dm6]	G	A	2.737e^-4	0.783	INTERGENIC
2L	13479219	2L_13479219_SNP [dm3] 2L_13479219_SNP [dm6]	G	C	2.740e^-4	0.783	INTRON CG42784
3R	9879793	3R_9879793_SNP [dm3] 3R_14054071_SNP [dm6]	C	A	2.744e^-4	0.783	INTERGENIC
2R	17991486	2R_17991486_SNP [dm3] 2R_22103981_SNP [dm6]	T	A	2.744e^-4	0.783	INTRON CG6613	TF binding site mE1_TFBS_sens
2L	7131600	2L_7131600_SNP [dm3] 2L_7131600_SNP [dm6]	T	A	2.744e^-4	0.783	INTRON Pvf3
3L	18935473	3L_18935473_SNP [dm3] 3L_18942373_SNP [dm6]	G	C	2.747e^-4	0.783	INTRON CG32204
2R	17599623	2R_17599623_SNP [dm3] 2R_21712118_SNP [dm6]	C	T	2.748e^-4	0.783	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19716189	2R_19716189_SNP [dm3] 2R_23828666_SNP [dm6]	A	G	2.755e^-4	0.783	INTRON CG5549
X	16894090	X_16894090_SNP [dm3] X_17000057_SNP [dm6]	T	C	2.760e^-4	0.783	INTRON CG45002
3R	22670707	3R_22670707_SNP [dm3] 3R_26844985_SNP [dm6]	A	G	2.763e^-4	0.783	INTRON Lerp
3R	25236526	3R_25236526_SNP [dm3] 3R_29410804_SNP [dm6]	A	T	2.765e^-4	0.783	INTRON Ptp99A
3L	8503977	3L_8503977_SNP [dm3] 3L_8510877_SNP [dm6]	A	G	2.772e^-4	0.783	SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
2L	11483985	2L_11483985_SNP [dm3] 2L_11483985_SNP [dm6]	G	T	2.774e^-4	0.783	UPSTREAM CG43355 & 1 other INTERGENIC
3L	3017531	3L_3017531_SNP [dm3] 3L_3017531_SNP [dm6]	G	A	2.777e^-4	0.783	UPSTREAM CG32487 INTERGENIC
3L	7872487	3L_7872487_SNP [dm3] 3L_7879387_SNP [dm6]	G	C	2.780e^-4	0.783	INTRON CG32365
2L	2277015	2L_2277015_SNP [dm3] 2L_2277015_SNP [dm6]	G	C	2.787e^-4	0.783	INTRON CR43753
3L	12183578	3L_12183578_SNP [dm3] 3L_12190478_SNP [dm6]	G	A	2.788e^-4	0.783	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4035599	3L_4035599_SNP [dm3] 3L_4035599_SNP [dm6]	C	A	2.791e^-4	0.783	NON_SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	3470828	3R_3470828_SNP [dm3] 3R_7645106_SNP [dm6]	G	T	2.794e^-4	0.783	INTERGENIC
3R	16918807	3R_16918807_DEL [dm3] 3R_21093085_DEL [dm6]	CCT	C	2.795e^-4	0.783	INTRON RhoGAP93B & 1 other
X	5619874	X_5619874_SNP [dm3] X_5725841_SNP [dm6]	C	T	2.799e^-4	0.783	INTRON CG32758
3R	1556291	3R_1556291_SNP [dm3] 3R_5730569_SNP [dm6]	G	A	2.808e^-4	0.783	INTERGENIC
3L	12165686	3L_12165686_SNP [dm3] 3L_12172586_SNP [dm6]	C	A	2.810e^-4	0.783	INTRON Rh7
3R	8867825	3R_8867825_SNP [dm3] 3R_13042103_SNP [dm6]	G	C	2.825e^-4	0.783	NON_SYNONYMOUS_CODING CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad
2R	8603779	2R_8603779_SNP [dm3] 2R_12716274_SNP [dm6]	G	A	2.828e^-4	0.783	INTRON CG42663
3R	24228738	3R_24228738_SNP [dm3] 3R_28403016_SNP [dm6]	C	T	2.832e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21867422	3R_21867422_SNP [dm3] 3R_26041700_SNP [dm6]	C	G	2.836e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
3R	13024555	3R_13024555_SNP [dm3] 3R_17198833_SNP [dm6]	T	G	2.851e^-4	0.783	INTRON Mur89F
2L	3534743	2L_3534743_SNP [dm3] 2L_3534743_SNP [dm6]	T	A	2.857e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11807447	3L_11807447_SNP [dm3] 3L_11814347_SNP [dm6]	C	G	2.858e^-4	0.783	NON_SYNONYMOUS_CODING CG42255
X	4679367	X_4679367_SNP [dm3] X_4785334_SNP [dm6]	A	G	2.859e^-4	0.783	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo
3L	12145357	3L_12145357_SNP [dm3] 3L_12152257_SNP [dm6]	C	A	2.861e^-4	0.783	SYNONYMOUS_CODING Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	27058750	3R_27058750_SNP [dm3] 3R_31233028_SNP [dm6]	T	C	2.866e^-4	0.783	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
3R	20805778	3R_20805778_SNP [dm3] 3R_24980056_SNP [dm6]	C	T	2.881e^-4	0.783	INTERGENIC
3R	15767664	3R_15767664_SNP [dm3] 3R_19941942_SNP [dm6]	T	A	2.885e^-4	0.783	INTRON Hs6st
2L	1103820	2L_1103820_SNP [dm3] 2L_1103820_SNP [dm6]	A	G	2.893e^-4	0.783	SPLICE_SITE_REGION mtRNApol SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9382408	2R_9382408_SNP [dm3] 2R_13494903_SNP [dm6]	A	G	2.893e^-4	0.783	UPSTREAM bbc DOWNSTREAM drk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6752543	2R_6752543_SNP [dm3] 2R_10865038_SNP [dm6]	C	T	2.899e^-4	0.783	INTRON CG30015
3R	13618906	3R_13618906_DEL [dm3] 3R_17793184_DEL [dm6]	ACA	A	2.901e^-4	0.783	INTRON CG43102
2L	5636166	2L_5636166_SNP [dm3] 2L_5636166_SNP [dm6]	A	G	2.901e^-4	0.783	INTRON CG31646
2R	17363386	2R_17363386_SNP [dm3] 2R_21475881_SNP [dm6]	A	T	2.901e^-4	0.783	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	3015753	X_3015753_SNP [dm3] X_3121720_SNP [dm6]	C	A	2.901e^-4	0.783	INTRON kirre
2R	7595603	2R_7595603_SNP [dm3] 2R_11708098_SNP [dm6]	C	T	2.903e^-4	0.783	INTERGENIC
3L	8501358	3L_8501358_SNP [dm3] 3L_8508258_SNP [dm6]	A	T	2.909e^-4	0.783	INTRON ZC3H3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1756216	2R_1756216_SNP [dm3] 2R_5868711_SNP [dm6]	C	A	2.909e^-4	0.783	INTERGENIC
3L	12354255	3L_12354255_SNP [dm3] 3L_12361155_SNP [dm6]	G	A	2.919e^-4	0.783	INTERGENIC
3L	8865763	3L_8865763_SNP [dm3] 3L_8872663_SNP [dm6]	C	T	2.925e^-4	0.783	INTRON dally	TF binding site BDTNP1_TFBS_twi
3R	2962375	3R_2962375_SNP [dm3] 3R_7136653_SNP [dm6]	C	T	2.925e^-4	0.783	INTRON Fer1	TF binding site BDTNP1_TFBS_dl
2R	6752567	2R_6752567_DEL [dm3] 2R_10865062_DEL [dm6]	AA	A	2.939e^-4	0.783	INTRON CG30015
3R	11993495	3R_11993495_SNP [dm3] 3R_16167773_SNP [dm6]	A	G	2.940e^-4	0.783	DOWNSTREAM CR43472 INTRON CG6006	TF binding site BDTNP1_TFBS_twi
2L	20858879	2L_20858879_SNP [dm3] 2L_20858879_SNP [dm6]	T	A	2.940e^-4	0.783	UPSTREAM CG14400 & 1 other INTRON CG9336	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3L	5431312	3L_5431312_SNP [dm3] 3L_5438212_SNP [dm6]	A	T	2.947e^-4	0.783	INTRON CG34391
2R	17597523	2R_17597523_INS [dm3] 2R_21710018_INS [dm6]	A	ATGTTAATAAAAAAGTTTAC...	2.948e^-4	0.783	UTR_3_PRIME CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22961363	3L_22961363_SNP [dm3] 3L_22968263_SNP [dm6]	A	G	2.952e^-4	0.783	INTERGENIC
2R	7595604	2R_7595604_SNP [dm3] 2R_11708099_SNP [dm6]	T	C	2.956e^-4	0.783	INTERGENIC
3L	1535932	3L_1535932_SNP [dm3] 3L_1535932_SNP [dm6]	C	T	2.961e^-4	0.783	SYNONYMOUS_CODING CG12091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	776509	2R_776509_SNP [dm3] 2R_4889004_SNP [dm6]	T	G	2.961e^-4	0.783	INTERGENIC	transposable element FlyBase
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	2.963e^-4	0.783	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	21867986	3R_21867986_SNP [dm3] 3R_26042264_SNP [dm6]	G	A	2.967e^-4	0.783	SPLICE_SITE_REGION gro UTR_5_PRIME gro UPSTREAM gro INTRON gro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14427127	2R_14427127_SNP [dm3] 2R_18539622_SNP [dm6]	A	G	2.967e^-4	0.783	UTR_5_PRIME Rgk2 UPSTREAM Rgk2 DOWNSTREAM Pepck & 1 other
3R	24248694	3R_24248694_SNP [dm3] 3R_28422972_SNP [dm6]	T	A	2.969e^-4	0.783	INTRON beat-VI
3R	18677908	3R_18677908_SNP [dm3] 3R_22852186_SNP [dm6]	C	T	2.971e^-4	0.783	UPSTREAM CR43846 INTERGENIC
3R	2873352	3R_2873352_SNP [dm3] 3R_7047630_SNP [dm6]	A	G	2.972e^-4	0.783	INTERGENIC
3L	4099234	3L_4099234_SNP [dm3] 3L_4099234_SNP [dm6]	C	G	2.972e^-4	0.783	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	7157188	3L_7157188_SNP [dm3] 3L_7164088_SNP [dm6]	G	A	2.979e^-4	0.783	INTRON Dscam2
3R	27057549	3R_27057549_SNP [dm3] 3R_31231827_SNP [dm6]	A	T	3.001e^-4	0.783	UTR_3_PRIME CG15563 DOWNSTREAM CG12054 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12396734	2L_12396734_SNP [dm3] 2L_12396734_SNP [dm6]	A	C	3.012e^-4	0.783	UTR_3_PRIME bru-2
2L	4123551	2L_4123551_SNP [dm3] 2L_4123551_SNP [dm6]	A	C	3.017e^-4	0.783	SYNONYMOUS_CODING Sr-CI	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7128779	2R_7128779_SNP [dm3] 2R_11241274_SNP [dm6]	C	G	3.018e^-4	0.783	DOWNSTREAM Listericin INTERGENIC
3L	12486616	3L_12486616_INS [dm3] 3L_12493516_INS [dm6]	AG	GACA	3.018e^-4	0.783	INTRON CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
3L	10362720	3L_10362720_SNP [dm3] 3L_10369620_SNP [dm6]	T	A	3.019e^-4	0.783	INTERGENIC
3L	8807787	3L_8807787_SNP [dm3] 3L_8814687_SNP [dm6]	T	G	3.020e^-4	0.783	INTERGENIC
2R	9606117	2R_9606117_SNP [dm3] 2R_13718612_SNP [dm6]	C	A	3.023e^-4	0.783	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18730150	3L_18730150_SNP [dm3] 3L_18737050_SNP [dm6]	C	G	3.024e^-4	0.783	INTERGENIC
3L	18730151	3L_18730151_DEL [dm3] 3L_18737051_DEL [dm6]	TACCAT	T	3.024e^-4	0.783	INTERGENIC
3L	12165621	3L_12165621_SNP [dm3] 3L_12172521_SNP [dm6]	T	A	3.026e^-4	0.783	INTRON Rh7
3L	3895674	3L_3895674_SNP [dm3] 3L_3895674_SNP [dm6]	G	A	3.033e^-4	0.783	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
X	16062664	X_16062664_SNP [dm3] X_16168631_SNP [dm6]	C	A	3.033e^-4	0.783	INTERGENIC
2L	11478219	2L_11478219_SNP [dm3] 2L_11478219_SNP [dm6]	C	T	3.034e^-4	0.783	INTERGENIC
2L	20667872	2L_20667872_SNP [dm3] 2L_20667872_SNP [dm6]	G	T	3.046e^-4	0.783	UTR_5_PRIME CG31678 INTRON CG31678 EXON CR45004
2R	1821862	2R_1821862_INS [dm3] 2R_5934357_INS [dm6]	C	CC	3.048e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22505219	3R_22505219_SNP [dm3] 3R_26679497_SNP [dm6]	G	A	3.051e^-4	0.783	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
2R	11515915	2R_11515915_SNP [dm3] 2R_15628410_SNP [dm6]	A	T	3.053e^-4	0.783	INTRON CG42524
X	1428405	X_1428405_SNP [dm3] X_1534372_SNP [dm6]	G	T	3.057e^-4	0.783	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	9935348	3L_9935348_SNP [dm3] 3L_9942248_SNP [dm6]	T	C	3.065e^-4	0.783	INTRON CG34356
3L	2805420	3L_2805420_SNP [dm3] 3L_2805420_SNP [dm6]	C	A	3.066e^-4	0.783	INTRON CG43444
2L	20661940	2L_20661940_SNP [dm3] 2L_20661940_SNP [dm6]	C	T	3.075e^-4	0.783	INTRON CG31678	TF binding site mE1_TFBS_cad
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	3.075e^-4	0.783	UTR_3_PRIME CG11714 UPSTREAM Fuca
2L	2276015	2L_2276015_SNP [dm3] 2L_2276015_SNP [dm6]	G	C	3.076e^-4	0.783	INTRON CR43753 EXON CR43753
2R	20566397	2R_20566397_SNP [dm3] 2R_24678874_SNP [dm6]	A	T	3.078e^-4	0.783	INTRON Mmp1
3R	3246208	3R_3246208_SNP [dm3] 3R_7420486_SNP [dm6]	T	A	3.083e^-4	0.783	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
2R	13605195	2R_13605195_SNP [dm3] 2R_17717690_SNP [dm6]	T	C	3.083e^-4	0.783	UTR_5_PRIME CG6424 UPSTREAM CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7661962	X_7661962_SNP [dm3] X_7767929_SNP [dm6]	C	A	3.085e^-4	0.783	UPSTREAM CG34338 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2720566	2L_2720566_SNP [dm3] 2L_2720566_SNP [dm6]	A	G	3.086e^-4	0.783	INTERGENIC
2L	838148	2L_838148_SNP [dm3] 2L_838148_SNP [dm6]	A	G	3.092e^-4	0.783	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20357718	3L_20357718_SNP [dm3] 3L_20364618_SNP [dm6]	T	C	3.093e^-4	0.783	INTRON Toll-9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12165690	3L_12165690_SNP [dm3] 3L_12172590_SNP [dm6]	A	T	3.097e^-4	0.783	INTRON Rh7
2R	13801371	2R_13801371_SNP [dm3] 2R_17913866_SNP [dm6]	C	T	3.098e^-4	0.783	INTRON Elk
2L	15386889	2L_15386889_SNP [dm3] 2L_15386889_SNP [dm6]	T	A	3.117e^-4	0.783	INTERGENIC
2R	19234865	2R_19234865_SNP [dm3] 2R_23347342_SNP [dm6]	A	C	3.119e^-4	0.783	NON_SYNONYMOUS_CODING CG9863 START_GAINED CG3502 UTR_5_PRIME CG3502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25305502	3R_25305502_SNP [dm3] 3R_29479780_SNP [dm6]	C	T	3.123e^-4	0.783	NON_SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	3623259	3L_3623259_SNP [dm3] 3L_3623259_SNP [dm6]	A	T	3.124e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_sens
2R	2057980	2R_2057980_DEL [dm3] 2R_6170475_DEL [dm6]	TT	T	3.126e^-4	0.783	DOWNSTREAM tRNA:R2:42Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13093273	3R_13093273_SNP [dm3] 3R_17267551_SNP [dm6]	C	A	3.137e^-4	0.783	INTERGENIC
2R	16175334	2R_16175334_SNP [dm3] 2R_20287829_SNP [dm6]	C	G	3.138e^-4	0.783	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3R	22853163	3R_22853163_SNP [dm3] 3R_27027441_SNP [dm6]	G	T	3.140e^-4	0.783	INTRON RYa-R
X	13973992	X_13973992_SNP [dm3] X_14079959_SNP [dm6]	C	T	3.146e^-4	0.783	INTERGENIC
X	1433371	X_1433371_SNP [dm3] X_1539338_SNP [dm6]	C	T	3.148e^-4	0.783	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	11286440	3L_11286440_SNP [dm3] 3L_11293340_SNP [dm6]	T	A	3.150e^-4	0.783	INTRON CG6175
3R	25366026	3R_25366026_SNP [dm3] 3R_29540304_SNP [dm6]	T	C	3.152e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19562302	3L_19562302_SNP [dm3] 3L_19569202_SNP [dm6]	C	T	3.152e^-4	0.783	INTRON Shal	TF binding site BDTNP1_TFBS_dl
3L	18847338	3L_18847338_SNP [dm3] 3L_18854238_SNP [dm6]	C	A	3.156e^-4	0.783	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22752403	3R_22752403_SNP [dm3] 3R_26926681_SNP [dm6]	A	G	3.157e^-4	0.783	INTRON sda
2R	17600180	2R_17600180_SNP [dm3] 2R_21712675_SNP [dm6]	C	T	3.157e^-4	0.783	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2447598	X_2447598_SNP [dm3] X_2553565_SNP [dm6]	T	A	3.165e^-4	0.783	UPSTREAM Pdfr INTRON Pdfr
X	18706416	X_18706416_SNP [dm3] X_18812383_SNP [dm6]	A	T	3.166e^-4	0.783	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC
3R	15662334	3R_15662334_SNP [dm3] 3R_19836612_SNP [dm6]	G	A	3.170e^-4	0.783	UTR_5_PRIME bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12085618	2R_12085618_SNP [dm3] 2R_16198113_SNP [dm6]	T	C	3.177e^-4	0.783	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12451231	2L_12451231_SNP [dm3] 2L_12451231_SNP [dm6]	C	T	3.185e^-4	0.783	SYNONYMOUS_CODING Oatp33Eb DOWNSTREAM CG5418	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1763859	2R_1763859_SNP [dm3] 2R_5876354_SNP [dm6]	C	G	3.187e^-4	0.783	INTERGENIC
2L	2070313	2L_2070313_SNP [dm3] 2L_2070313_SNP [dm6]	C	A	3.190e^-4	0.783	INTRON dpr3
X	16161916	X_16161916_SNP [dm3] X_16267883_SNP [dm6]	G	A	3.191e^-4	0.783	INTRON kat80
3L	6918599	3L_6918599_SNP [dm3] 3L_6925499_SNP [dm6]	G	A	3.196e^-4	0.783	INTERGENIC
2R	15490632	2R_15490632_SNP [dm3] 2R_19603127_SNP [dm6]	G	A	3.203e^-4	0.783	UPSTREAM CR44473 INTRON sm
2R	17599670	2R_17599670_SNP [dm3] 2R_21712165_SNP [dm6]	T	C	3.203e^-4	0.783	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18106367	3R_18106367_SNP [dm3] 3R_22280645_SNP [dm6]	A	C	3.204e^-4	0.783	INTRON SKIP
2R	17695838	2R_17695838_SNP [dm3] 2R_21808333_SNP [dm6]	G	T	3.206e^-4	0.783	INTERGENIC
3R	3470832	3R_3470832_SNP [dm3] 3R_7645110_SNP [dm6]	T	C	3.207e^-4	0.783	INTERGENIC
3L	12158818	3L_12158818_SNP [dm3] 3L_12165718_SNP [dm6]	T	C	3.208e^-4	0.783	UTR_3_PRIME Rh7
3L	18847599	3L_18847599_SNP [dm3] 3L_18854499_SNP [dm6]	G	A	3.213e^-4	0.783	EXON CR45387	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16175521	2R_16175521_SNP [dm3] 2R_20288016_SNP [dm6]	T	G	3.218e^-4	0.783	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3R	10874275	3R_10874275_DEL [dm3] 3R_15048553_DEL [dm6]	CCC	C	3.222e^-4	0.783	INTERGENIC
2R	5342249	2R_5342249_SNP [dm3] 2R_9454744_SNP [dm6]	T	C	3.225e^-4	0.783	UPSTREAM CG33758 INTRON Camta & 1 other
2R	20192908	2R_20192908_SNP [dm3] 2R_24305385_SNP [dm6]	G	A	3.226e^-4	0.783	UPSTREAM betaTub60D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	4367955	3L_4367955_SNP [dm3] 3L_4367955_SNP [dm6]	T	G	3.229e^-4	0.783	UTR_3_PRIME DopEcR UPSTREAM CG11342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11417678	2R_11417678_SNP [dm3] 2R_15530173_SNP [dm6]	T	G	3.230e^-4	0.783	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9869352	3L_9869352_SNP [dm3] 3L_9876252_SNP [dm6]	A	G	3.230e^-4	0.783	EXON CR45406
3R	13816724	3R_13816724_SNP [dm3] 3R_17991002_SNP [dm6]	C	A	3.234e^-4	0.783	INTRON cpo
2L	20849272	2L_20849272_SNP [dm3] 2L_20849272_SNP [dm6]	G	C	3.236e^-4	0.783	UPSTREAM CG14402 DOWNSTREAM CG31676 INTERGENIC
3R	21866797	3R_21866797_SNP [dm3] 3R_26041075_SNP [dm6]	C	T	3.237e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2228132	3R_2228132_SNP [dm3] 3R_6402410_SNP [dm6]	T	C	3.239e^-4	0.783	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3358405	X_3358405_SNP [dm3] X_3464372_SNP [dm6]	T	A	3.242e^-4	0.783	UPSTREAM CG16781 INTRON CR44999	transposable element FlyBase
2L	11482978	2L_11482978_SNP [dm3] 2L_11482978_SNP [dm6]	A	G	3.245e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7201220	2L_7201220_SNP [dm3] 2L_7201220_SNP [dm6]	C	T	3.246e^-4	0.783	INTRON CG4502
2L	2241308	2L_2241308_SNP [dm3] 2L_2241308_SNP [dm6]	C	A	3.250e^-4	0.783	UPSTREAM Tengl1 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	3.252e^-4	0.783	INTERGENIC
X	18560148	X_18560148_SNP [dm3] X_18666115_SNP [dm6]	A	G	3.258e^-4	0.783	EXON CR45514	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7632475	2L_7632475_DEL [dm3] 2L_7632475_DEL [dm6]	TT	T	3.260e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12468092	3L_12468092_SNP [dm3] 3L_12474992_SNP [dm6]	G	T	3.263e^-4	0.783	UTR_3_PRIME CG10663 DOWNSTREAM CG10616	TF binding site mE1_TFBS_cad
3L	18931052	3L_18931052_SNP [dm3] 3L_18937952_SNP [dm6]	A	T	3.266e^-4	0.783	INTRON CG32204
X	1423766	X_1423766_SNP [dm3] X_1529733_SNP [dm6]	C	T	3.271e^-4	0.783	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	11482297	2L_11482297_SNP [dm3] 2L_11482297_SNP [dm6]	G	C	3.277e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27529214	3R_27529214_SNP [dm3] 3R_31703492_SNP [dm6]	C	A	3.284e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18933967	3L_18933967_SNP [dm3] 3L_18940867_SNP [dm6]	G	T	3.304e^-4	0.783	INTRON CG32204
3L	12165609	3L_12165609_SNP [dm3] 3L_12172509_SNP [dm6]	A	T	3.304e^-4	0.783	INTRON Rh7
3R	25158885	3R_25158885_SNP [dm3] 3R_29333163_SNP [dm6]	C	A	3.313e^-4	0.783	INTERGENIC
2R	13748996	2R_13748996_SNP [dm3] 2R_17861491_SNP [dm6]	T	A	3.320e^-4	0.783	NON_SYNONYMOUS_CODING CG14490 UTR_3_PRIME thr DOWNSTREAM thr & 1 other	TF binding site mE1_TFBS_HSA
3L	16677080	3L_16677080_SNP [dm3] 3L_16683980_SNP [dm6]	T	A	3.323e^-4	0.783	INTRON Lasp & 1 other
2L	8143579	2L_8143579_SNP [dm3] 2L_8143579_SNP [dm6]	T	C	3.330e^-4	0.783	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10934793	3L_10934793_SNP [dm3] 3L_10941693_SNP [dm6]	T	C	3.340e^-4	0.783	INTERGENIC
3L	12151335	3L_12151335_SNP [dm3] 3L_12158235_SNP [dm6]	A	G	3.342e^-4	0.783	SYNONYMOUS_CODING CG9760	TF binding site mE1_TFBS_cad
3L	18604428	3L_18604428_SNP [dm3] 3L_18611328_SNP [dm6]	A	C	3.343e^-4	0.783	UPSTREAM CG32199 INTRON CG4174 & 2 others
2R	7161744	2R_7161744_SNP [dm3] 2R_11274239_SNP [dm6]	C	T	3.347e^-4	0.783	INTRON TpnC47D
3R	21575171	3R_21575171_SNP [dm3] 3R_25749449_SNP [dm6]	A	T	3.348e^-4	0.783	INTRON LpR1
3L	12671120	3L_12671120_SNP [dm3] 3L_12678020_SNP [dm6]	G	T	3.357e^-4	0.783	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13747635	2R_13747635_SNP [dm3] 2R_17860130_SNP [dm6]	C	T	3.358e^-4	0.783	UTR_3_PRIME olf186-F UPSTREAM CG14490
2L	4749928	2L_4749928_INS [dm3] 2L_4749928_INS [dm6]	T	TGTGCAT	3.375e^-4	0.783	INTRON CG15630
2R	1809872	2R_1809872_SNP [dm3] 2R_5922367_SNP [dm6]	C	T	3.381e^-4	0.783	INTRON CG43366
2R	18512495	2R_18512495_SNP [dm3] 2R_22624990_SNP [dm6]	A	G	3.387e^-4	0.783	INTRON CG33143
3L	18831627	3L_18831627_SNP [dm3] 3L_18838527_SNP [dm6]	A	T	3.391e^-4	0.783	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3981070	3L_3981070_SNP [dm3] 3L_3981070_SNP [dm6]	T	A	3.393e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	6272806	X_6272806_SNP [dm3] X_6378773_SNP [dm6]	T	C	3.398e^-4	0.783	INTERGENIC
2L	20642326	2L_20642326_SNP [dm3] 2L_20642326_SNP [dm6]	T	C	3.398e^-4	0.783	UTR_3_PRIME CG17470 DOWNSTREAM Sfp38D
2L	20642559	2L_20642559_SNP [dm3] 2L_20642559_SNP [dm6]	C	T	3.398e^-4	0.783	SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
2L	20647754	2L_20647754_SNP [dm3] 2L_20647754_SNP [dm6]	C	T	3.398e^-4	0.783	UPSTREAM snoRNA:Me28S-C2645a & 2 others DOWNSTREAM CG2608 EXON Uhg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run
X	15561681	X_15561681_SNP [dm3] X_15667648_SNP [dm6]	A	C	3.411e^-4	0.783	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_cnc
X	14108102	X_14108102_SNP [dm3] X_14214069_SNP [dm6]	T	C	3.414e^-4	0.783	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15429825	3R_15429825_SNP [dm3] 3R_19604103_SNP [dm6]	A	G	3.420e^-4	0.783	UTR_5_PRIME CG7342
3L	2828055	3L_2828055_SNP [dm3] 3L_2828055_SNP [dm6]	G	A	3.422e^-4	0.783	INTRON CG43444
2L	6906775	2L_6906775_SNP [dm3] 2L_6906775_SNP [dm6]	G	A	3.422e^-4	0.783	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
2L	11404752	2L_11404752_SNP [dm3] 2L_11404752_SNP [dm6]	G	A	3.428e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs
3R	27247965	3R_27247965_SNP [dm3] 3R_31422243_SNP [dm6]	T	C	3.430e^-4	0.783	INTRON Gprk2
3R	23422236	3R_23422236_SNP [dm3] 3R_27596514_SNP [dm6]	G	A	3.431e^-4	0.783	UPSTREAM CG5639 INTERGENIC
3R	2095032	3R_2095032_SNP [dm3] 3R_6269310_SNP [dm6]	T	G	3.452e^-4	0.783	UPSTREAM Osi11 INTERGENIC
3L	18129683	3L_18129683_SNP [dm3] 3L_18136583_SNP [dm6]	G	A	3.457e^-4	0.783	UPSTREAM CR44669 INTERGENIC
3R	15419893	3R_15419893_SNP [dm3] 3R_19594171_SNP [dm6]	G	A	3.460e^-4	0.783	INTRON Dys
3R	19560978	3R_19560978_SNP [dm3] 3R_23735256_SNP [dm6]	T	C	3.468e^-4	0.783	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12831215	3L_12831215_SNP [dm3] 3L_12838115_SNP [dm6]	A	T	3.470e^-4	0.783	INTRON CG10960
3L	11807056	3L_11807056_SNP [dm3] 3L_11813956_SNP [dm6]	G	A	3.474e^-4	0.783	INTRON CG42255
2L	3858986	2L_3858986_SNP [dm3] 2L_3858986_SNP [dm6]	C	T	3.475e^-4	0.783	INTERGENIC
2L	20846224	2L_20846224_SNP [dm3] 2L_20846224_SNP [dm6]	T	C	3.476e^-4	0.783	INTRON CG31676
3L	11286459	3L_11286459_SNP [dm3] 3L_11293359_SNP [dm6]	G	T	3.480e^-4	0.783	INTRON CG6175	TF binding site mE1_TFBS_cad
X	21181894	X_21181894_SNP [dm3] X_21310867_SNP [dm6]	A	T	3.480e^-4	0.783	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10975126	3L_10975126_DEL [dm3] 3L_10982026_DEL [dm6]	GACGATGG	G	3.489e^-4	0.783	UTR_3_PRIME klu
2R	2034923	2R_2034923_SNP [dm3] 2R_6147418_SNP [dm6]	A	G	3.494e^-4	0.783	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22956387	3L_22956387_SNP [dm3] 3L_22963287_SNP [dm6]	G	A	3.496e^-4	0.783	INTERGENIC
X	17107551	X_17107551_SNP [dm3] X_17213518_SNP [dm6]	A	G	3.501e^-4	0.783	SYNONYMOUS_CODING CG18258
3R	11975270	3R_11975270_SNP [dm3] 3R_16149548_SNP [dm6]	A	T	3.502e^-4	0.783	UTR_3_PRIME CG5916 & 1 other DOWNSTREAM CG5916
2L	12878312	2L_12878312_SNP [dm3] 2L_12878312_SNP [dm6]	G	C	3.506e^-4	0.783	INTERGENIC
X	12156745	X_12156745_SNP [dm3] X_12262712_SNP [dm6]	A	G	3.514e^-4	0.783	INTRON Ten-a
2R	10182146	2R_10182146_SNP [dm3] 2R_14294641_SNP [dm6]	T	C	3.514e^-4	0.783	UTR_3_PRIME Ih INTRON Ih
2R	6848301	2R_6848301_SNP [dm3] 2R_10960796_SNP [dm6]	T	A	3.519e^-4	0.783	INTERGENIC
X	6272898	X_6272898_SNP [dm3] X_6378865_SNP [dm6]	T	A	3.520e^-4	0.783	INTERGENIC
X	4624109	X_4624109_SNP [dm3] X_4730076_SNP [dm6]	C	G	3.522e^-4	0.783	DOWNSTREAM Proc-R INTERGENIC
X	1420974	X_1420974_SNP [dm3] X_1526941_SNP [dm6]	A	G	3.526e^-4	0.783	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4218897	2L_4218897_SNP [dm3] 2L_4218897_SNP [dm6]	C	T	3.538e^-4	0.783	INTRON ft	TF binding site mE1_TFBS_HSA
2L	3441804	2L_3441804_INS [dm3] 2L_3441804_INS [dm6]	A	AA	3.544e^-4	0.783	INTERGENIC
2L	7633060	2L_7633060_SNP [dm3] 2L_7633060_SNP [dm6]	T	C	3.545e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11478135	2L_11478135_SNP [dm3] 2L_11478135_SNP [dm6]	T	A	3.551e^-4	0.783	INTERGENIC
2L	20658019	2L_20658019_SNP [dm3] 2L_20658019_SNP [dm6]	G	A	3.552e^-4	0.783	SYNONYMOUS_CODING CG2614
2R	9160544	2R_9160544_SNP [dm3] 2R_13273039_SNP [dm6]	C	T	3.555e^-4	0.783	INTRON Dh31-R
3L	10899264	3L_10899264_DEL [dm3] 3L_10906164_DEL [dm6]	TGT	T	3.561e^-4	0.783	INTERGENIC
3R	2569408	3R_2569408_SNP [dm3] 3R_6743686_SNP [dm6]	T	C	3.565e^-4	0.783	NON_SYNONYMOUS_CODING zen2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11032538	3L_11032538_SNP [dm3] 3L_11039438_SNP [dm6]	T	C	3.569e^-4	0.783	INTRON CG43693
3R	27425542	3R_27425542_SNP [dm3] 3R_31599820_SNP [dm6]	C	A	3.570e^-4	0.783	INTRON CycG	TF binding site mE1_TFBS_cad
2R	16209697	2R_16209697_SNP [dm3] 2R_20322192_SNP [dm6]	T	C	3.571e^-4	0.783	NON_SYNONYMOUS_CODING CG8920	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	14080685	2R_14080685_SNP [dm3] 2R_18193180_SNP [dm6]	A	T	3.575e^-4	0.783	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	5804863	3R_5804863_SNP [dm3] 3R_9979141_SNP [dm6]	A	T	3.576e^-4	0.783	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14300277	2L_14300277_SNP [dm3] 2L_14300277_SNP [dm6]	C	T	3.581e^-4	0.783	UPSTREAM wb INTRON wb
X	16911951	X_16911951_SNP [dm3] X_17017918_SNP [dm6]	A	C	3.583e^-4	0.783	INTRON CG45002
3R	3465221	3R_3465221_SNP [dm3] 3R_7639499_SNP [dm6]	A	T	3.587e^-4	0.783	UPSTREAM CG34127 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14108108	X_14108108_SNP [dm3] X_14214075_SNP [dm6]	G	T	3.589e^-4	0.783	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11969376	2R_11969376_SNP [dm3] 2R_16081871_SNP [dm6]	T	C	3.591e^-4	0.783	UTR_3_PRIME Dg
2R	16947662	2R_16947662_SNP [dm3] 2R_21060157_SNP [dm6]	G	T	3.602e^-4	0.783	UPSTREAM mRpL54 DOWNSTREAM cpa INTRON CG15653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16918976	3R_16918976_SNP [dm3] 3R_21093254_SNP [dm6]	G	A	3.608e^-4	0.783	INTRON RhoGAP93B & 1 other
3L	12156801	3L_12156801_SNP [dm3] 3L_12163701_SNP [dm6]	G	A	3.621e^-4	0.783	UTR_5_PRIME CG9760 DOWNSTREAM Rh7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13010070	X_13010070_SNP [dm3] X_13116037_SNP [dm6]	A	C	3.622e^-4	0.783	INTRON CG42237
3L	4392492	3L_4392492_SNP [dm3] 3L_4392492_SNP [dm6]	T	C	3.624e^-4	0.783	INTRON slow
2R	12614392	2R_12614392_SNP [dm3] 2R_16726887_SNP [dm6]	T	C	3.628e^-4	0.783	INTRON CG30463
2L	2275942	2L_2275942_SNP [dm3] 2L_2275942_SNP [dm6]	C	G	3.633e^-4	0.783	INTRON CR43753 EXON CR43753
3L	1875253	3L_1875253_SNP [dm3] 3L_1875253_SNP [dm6]	A	G	3.636e^-4	0.783	INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4106466	2L_4106466_SNP [dm3] 2L_4106466_SNP [dm6]	A	G	3.638e^-4	0.783	INTRON ed
2R	10562702	2R_10562702_SNP [dm3] 2R_14675197_SNP [dm6]	G	T	3.649e^-4	0.783	UTR_5_PRIME CG30479 UTR_3_PRIME CG30480 UPSTREAM CG30479 INTRON mspo
2R	17110817	2R_17110817_SNP [dm3] 2R_21223312_SNP [dm6]	T	G	3.660e^-4	0.783	INTRON ASPP
3R	22456626	3R_22456626_SNP [dm3] 3R_26630904_SNP [dm6]	A	T	3.663e^-4	0.783	UPSTREAM TwdlN DOWNSTREAM TwdlJ INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	27058770	3R_27058770_SNP [dm3] 3R_31233048_SNP [dm6]	T	C	3.666e^-4	0.783	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
3L	2467399	3L_2467399_DEL [dm3] 3L_2467399_DEL [dm6]	GA	G	3.672e^-4	0.783	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3820765	3L_3820765_SNP [dm3] 3L_3820765_SNP [dm6]	A	G	3.672e^-4	0.783	INTRON enc
X	7397082	X_7397082_SNP [dm3] X_7503049_SNP [dm6]	G	A	3.674e^-4	0.783	INTERGENIC
3R	15430125	3R_15430125_SNP [dm3] 3R_19604403_SNP [dm6]	G	C	3.682e^-4	0.783	SYNONYMOUS_CODING CG7342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11525027	3L_11525027_SNP [dm3] 3L_11531927_SNP [dm6]	T	A	3.694e^-4	0.783	INTRON Mob2
3L	12327989	3L_12327989_SNP [dm3] 3L_12334889_SNP [dm6]	T	C	3.697e^-4	0.783	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3L	14991764	3L_14991764_SNP [dm3] 3L_14998664_SNP [dm6]	T	C	3.701e^-4	0.783	DOWNSTREAM Zip71B INTRON mRpL39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2R	12343808	2R_12343808_SNP [dm3] 2R_16456303_SNP [dm6]	T	C	3.703e^-4	0.783	INTERGENIC
3L	3820800	3L_3820800_SNP [dm3] 3L_3820800_SNP [dm6]	T	C	3.704e^-4	0.783	INTRON enc
2R	9405931	2R_9405931_SNP [dm3] 2R_13518426_SNP [dm6]	C	T	3.706e^-4	0.783	NON_SYNONYMOUS_CODING Vmat DOWNSTREAM CG13330 INTRON Vmat	TF binding site mE1_TFBS_cad
X	9215287	X_9215287_SNP [dm3] X_9321254_SNP [dm6]	A	G	3.709e^-4	0.783	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3L	7417871	3L_7417871_SNP [dm3] 3L_7424771_SNP [dm6]	C	T	3.721e^-4	0.783	INTRON CG42458
2R	6450780	2R_6450780_SNP [dm3] 2R_10563275_SNP [dm6]	C	T	3.731e^-4	0.783	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15300029	3L_15300029_SNP [dm3] 3L_15306929_SNP [dm6]	T	G	3.734e^-4	0.783	INTRON CG7255
3R	10265839	3R_10265839_SNP [dm3] 3R_14440117_SNP [dm6]	C	T	3.737e^-4	0.783	INTRON cv-c
X	21181899	X_21181899_DEL [dm3] X_21310872_DEL [dm6]	CGTTTT	G	3.739e^-4	0.783	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20856280	2L_20856280_SNP [dm3] 2L_20856280_SNP [dm6]	A	T	3.741e^-4	0.783	SYNONYMOUS_CODING twit DOWNSTREAM CG14400	TF binding site mE1_TFBS_inv
2L	3441802	2L_3441802_SNP [dm3] 2L_3441802_SNP [dm6]	T	G	3.748e^-4	0.783	INTERGENIC
3R	2569403	3R_2569403_SNP [dm3] 3R_6743681_SNP [dm6]	T	A	3.751e^-4	0.783	SYNONYMOUS_CODING zen2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13900352	2R_13900352_SNP [dm3] 2R_18012847_SNP [dm6]	G	C	3.751e^-4	0.783	INTERGENIC
3L	14996067	3L_14996067_SNP [dm3] 3L_15002967_SNP [dm6]	A	G	3.763e^-4	0.783	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18762256	2L_18762256_DEL [dm3] 2L_18762256_DEL [dm6]	TTATCGAGCTTTGAGTTTGT...	T	3.766e^-4	0.783	DOWNSTREAM ham INTERGENIC
2R	12343826	2R_12343826_SNP [dm3] 2R_16456321_SNP [dm6]	T	A	3.767e^-4	0.783	INTERGENIC
2R	13325796	2R_13325796_SNP [dm3] 2R_17438291_SNP [dm6]	A	C	3.767e^-4	0.783	INTRON EDTP
3L	4290550	3L_4290550_SNP [dm3] 3L_4290550_SNP [dm6]	T	C	3.767e^-4	0.783	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14080644	2R_14080644_INS [dm3] 2R_18193139_INS [dm6]	A	ACAGCCTAAC	3.768e^-4	0.783	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	14342717	2R_14342717_SNP [dm3] 2R_18455212_SNP [dm6]	G	A	3.768e^-4	0.783	UPSTREAM CG17669 INTERGENIC
2R	6322828	2R_6322828_SNP [dm3] 2R_10435323_SNP [dm6]	G	A	3.769e^-4	0.783	NON_SYNONYMOUS_CODING RanBPM UTR_3_PRIME RanBPM
3R	6960143	3R_6960143_INS [dm3] 3R_11134421_INS [dm6]	A	AAAACACTTTA...	3.773e^-4	0.783	INTERGENIC
3R	11635554	3R_11635554_SNP [dm3] 3R_15809832_SNP [dm6]	G	C	3.779e^-4	0.783	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2L	20906452	2L_20906452_SNP [dm3] 2L_20906452_SNP [dm6]	A	T	3.783e^-4	0.783	INTRON sky & 1 other
3R	21744003	3R_21744003_SNP [dm3] 3R_25918281_SNP [dm6]	C	T	3.783e^-4	0.783	SYNONYMOUS_CODING CG42235 INTRON CG42235
2R	17683238	2R_17683238_SNP [dm3] 2R_21795733_SNP [dm6]	C	A	3.798e^-4	0.783	UPSTREAM CG34204 INTERGENIC
3L	16854193	3L_16854193_DEL [dm3] 3L_16861093_DEL [dm6]	AAAAAGTGGATGTGCGGATA...	A	3.798e^-4	0.783	UPSTREAM CG13029 DOWNSTREAM sinah INTRON Rh4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12165691	3L_12165691_SNP [dm3] 3L_12172591_SNP [dm6]	A	G	3.802e^-4	0.783	INTRON Rh7
2R	17110474	2R_17110474_SNP [dm3] 2R_21222969_SNP [dm6]	C	T	3.805e^-4	0.783	INTRON ASPP	TF binding site mE1_TFBS_cad
X	3543720	X_3543720_SNP [dm3] X_3649687_SNP [dm6]	C	T	3.809e^-4	0.783	INTRON AstA-R1
3R	25512786	3R_25512786_SNP [dm3] 3R_29687064_SNP [dm6]	A	T	3.815e^-4	0.783	UPSTREAM Obp99c INTRON Obp99c
2L	1722086	2L_1722086_SNP [dm3] 2L_1722086_SNP [dm6]	T	G	3.815e^-4	0.783	INTRON Rim2
X	6455336	X_6455336_SNP [dm3] X_6561303_SNP [dm6]	C	T	3.819e^-4	0.783	SYNONYMOUS_CODING CG34417
3L	3285014	3L_3285014_SNP [dm3] 3L_3285014_SNP [dm6]	G	C	3.823e^-4	0.783	INTRON CG12017
3R	15081550	3R_15081550_SNP [dm3] 3R_19255828_SNP [dm6]	T	C	3.824e^-4	0.783	UPSTREAM CG14280 INTERGENIC
2L	6953858	2L_6953858_SNP [dm3] 2L_6953858_SNP [dm6]	C	T	3.830e^-4	0.783	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
2R	11070600	2R_11070600_SNP [dm3] 2R_15183095_SNP [dm6]	C	G	3.831e^-4	0.783	INTRON igl
3R	21867421	3R_21867421_SNP [dm3] 3R_26041699_SNP [dm6]	G	A	3.836e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
X	13306446	X_13306446_SNP [dm3] X_13412413_SNP [dm6]	C	T	3.839e^-4	0.783	NON_SYNONYMOUS_CODING CG1998 UPSTREAM CG1998 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19260404	2R_19260404_SNP [dm3] 2R_23372881_SNP [dm6]	C	T	3.845e^-4	0.783	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21867286	3R_21867286_SNP [dm3] 3R_26041564_SNP [dm6]	T	C	3.852e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_jumu mE1_TFBS_Trl
2L	11465122	2L_11465122_SNP [dm3] 2L_11465122_SNP [dm6]	T	C	3.854e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23979641	3R_23979641_SNP [dm3] 3R_28153919_SNP [dm6]	A	T	3.856e^-4	0.783	INTRON CG34354
3L	11802527	3L_11802527_SNP [dm3] 3L_11809427_SNP [dm6]	C	T	3.863e^-4	0.783	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
3L	12165634	3L_12165634_SNP [dm3] 3L_12172534_SNP [dm6]	T	G	3.865e^-4	0.783	INTRON Rh7
2L	17364844	2L_17364844_SNP [dm3] 2L_17364844_SNP [dm6]	G	T	3.867e^-4	0.783	DOWNSTREAM CG31804 INTERGENIC
3L	3431322	3L_3431322_SNP [dm3] 3L_3431322_SNP [dm6]	C	T	3.867e^-4	0.783	INTRON eIF5B
X	11014395	X_11014395_SNP [dm3] X_11120362_SNP [dm6]	G	C	3.868e^-4	0.783	NON_SYNONYMOUS_CODING CG11122	TF binding site mE1_TFBS_chinmo
2R	6182052	2R_6182052_SNP [dm3] 2R_10294547_SNP [dm6]	G	A	3.871e^-4	0.783	INTRON CAP	TF binding site mE1_TFBS_sens
2R	8593777	2R_8593777_SNP [dm3] 2R_12706272_SNP [dm6]	G	A	3.878e^-4	0.783	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
3R	22376796	3R_22376796_SNP [dm3] 3R_26551074_SNP [dm6]	T	A	3.890e^-4	0.783	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11295406	2R_11295406_INS [dm3] 2R_15407901_INS [dm6]	A	AT	3.899e^-4	0.783	UPSTREAM Mtk INTRON CG43729
X	2387295	X_2387295_SNP [dm3] X_2493262_SNP [dm6]	G	A	3.901e^-4	0.783	INTRON trol
2R	2037648	2R_2037648_SNP [dm3] 2R_6150143_SNP [dm6]	C	T	3.905e^-4	0.783	INTRON EcR
3R	16918883	3R_16918883_SNP [dm3] 3R_21093161_SNP [dm6]	T	C	3.906e^-4	0.783	INTRON RhoGAP93B & 1 other
3R	27058780	3R_27058780_SNP [dm3] 3R_31233058_SNP [dm6]	A	G	3.907e^-4	0.783	SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
2L	13941500	2L_13941500_SNP [dm3] 2L_13941500_SNP [dm6]	G	A	3.910e^-4	0.783	INTRON Ance-3
2L	20755636	2L_20755636_SNP [dm3] 2L_20755636_SNP [dm6]	T	G	3.916e^-4	0.783	NON_SYNONYMOUS_CODING CG9323 DOWNSTREAM Ns4
3L	19326698	3L_19326698_SNP [dm3] 3L_19333598_SNP [dm6]	C	T	3.927e^-4	0.783	INTRON pip
2R	16176053	2R_16176053_SNP [dm3] 2R_20288548_SNP [dm6]	A	T	3.933e^-4	0.783	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199
3L	10362829	3L_10362829_SNP [dm3] 3L_10369729_SNP [dm6]	T	C	3.941e^-4	0.783	INTERGENIC
2L	6895224	2L_6895224_DEL [dm3] 2L_6895224_DEL [dm6]	AA	A	3.944e^-4	0.783	INTRON Nlg2
X	13443299	X_13443299_SNP [dm3] X_13549266_SNP [dm6]	A	G	3.944e^-4	0.783	INTERGENIC
2R	16175297	2R_16175297_SNP [dm3] 2R_20287792_SNP [dm6]	C	G	3.944e^-4	0.783	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F	TF binding site mE1_TFBS_HSA
3L	8002985	3L_8002985_SNP [dm3] 3L_8009885_SNP [dm6]	C	G	3.945e^-4	0.783	INTRON nmo
2L	7201171	2L_7201171_SNP [dm3] 2L_7201171_SNP [dm6]	G	A	3.948e^-4	0.783	INTRON CG4502
3L	7297079	3L_7297079_SNP [dm3] 3L_7303979_SNP [dm6]	T	C	3.957e^-4	0.783	INTRON unc-13-4A	TF binding site mE1_TFBS_inv
3L	8749993	3L_8749993_SNP [dm3] 3L_8756893_SNP [dm6]	G	A	3.957e^-4	0.783	SYNONYMOUS_CODING CG6576 INTRON Fhos
2R	12433600	2R_12433600_SNP [dm3] 2R_16546095_SNP [dm6]	T	C	3.968e^-4	0.783	INTERGENIC
2L	17779086	2L_17779086_SNP [dm3] 2L_17779086_SNP [dm6]	G	T	3.981e^-4	0.783	UPSTREAM CadN INTERGENIC
3R	18426827	3R_18426827_SNP [dm3] 3R_22601105_SNP [dm6]	C	T	3.994e^-4	0.783	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5710533	3R_5710533_SNP [dm3] 3R_9884811_SNP [dm6]	T	C	3.998e^-4	0.783	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	18482300	3R_18482300_SNP [dm3] 3R_22656578_SNP [dm6]	A	C	4.002e^-4	0.783	INTRON CG45058
3R	2269101	3R_2269101_SNP [dm3] 3R_6443379_SNP [dm6]	T	A	4.018e^-4	0.783	INTRON gpp	TF binding site mE1_TFBS_cad
3L	19864812	3L_19864812_SNP [dm3] 3L_19871712_SNP [dm6]	G	T	4.025e^-4	0.783	UPSTREAM Rab8 INTRON CG8334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8927284	2L_8927284_SNP [dm3] 2L_8927284_SNP [dm6]	G	C	4.026e^-4	0.783	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
3L	5812621	3L_5812621_SNP [dm3] 3L_5819521_SNP [dm6]	T	C	4.045e^-4	0.783	INTRON vn
X	3235862	X_3235862_SNP [dm3] X_3341829_SNP [dm6]	A	G	4.050e^-4	0.783	UTR_3_PRIME dnc INTRON CR44886
2L	20850102	2L_20850102_SNP [dm3] 2L_20850102_SNP [dm6]	C	G	4.058e^-4	0.783	SYNONYMOUS_CODING CG14402 DOWNSTREAM CG31676
2R	17895994	2R_17895994_SNP [dm3] 2R_22008489_SNP [dm6]	G	A	4.059e^-4	0.783	INTRON CG34370
2L	21894011	2L_21894011_SNP [dm3] 2L_21894011_SNP [dm6]	C	A	4.061e^-4	0.783	UPSTREAM CR43762 INTERGENIC
2R	6919550	2R_6919550_INS [dm3] 2R_11032045_INS [dm6]	C	GAATGTG	4.066e^-4	0.783	INTRON luna
2R	2053083	2R_2053083_SNP [dm3] 2R_6165578_SNP [dm6]	G	A	4.070e^-4	0.783	UPSTREAM tRNA:K2:42Ab & 2 others INTRON EcR	TF binding site mE1_TFBS_cad
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	4.076e^-4	0.783	DOWNSTREAM lola INTRON lola
3R	21867300	3R_21867300_SNP [dm3] 3R_26041578_SNP [dm6]	G	T	4.077e^-4	0.783	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
3L	2667902	3L_2667902_SNP [dm3] 3L_2667902_SNP [dm6]	C	T	4.079e^-4	0.783	INTRON Fife
X	18560097	X_18560097_SNP [dm3] X_18666064_SNP [dm6]	G	T	4.080e^-4	0.783	UPSTREAM CR45514 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	17338590	X_17338590_SNP [dm3] X_17444557_SNP [dm6]	G	A	4.083e^-4	0.783	UPSTREAM CG12994 INTERGENIC
2R	12109848	2R_12109848_SNP [dm3] 2R_16222343_SNP [dm6]	G	A	4.090e^-4	0.783	SYNONYMOUS_CODING CG7798 UPSTREAM mrj DOWNSTREAM CG15706 EXON CR43898	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15358598	X_15358598_SNP [dm3] X_15464565_SNP [dm6]	T	C	4.102e^-4	0.783	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	12165592	3L_12165592_SNP [dm3] 3L_12172492_SNP [dm6]	A	G	4.102e^-4	0.783	INTRON Rh7
X	9331523	X_9331523_SNP [dm3] X_9437490_SNP [dm6]	C	A	4.105e^-4	0.783	INTRON mgl
2R	10108061	2R_10108061_SNP [dm3] 2R_14220556_SNP [dm6]	G	A	4.105e^-4	0.783	UTR_5_PRIME CG8468 INTRON CG8468	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13819024	3L_13819024_SNP [dm3] 3L_13825924_SNP [dm6]	G	A	4.107e^-4	0.783	INTERGENIC
3R	3144031	3R_3144031_SNP [dm3] 3R_7318309_SNP [dm6]	T	A	4.113e^-4	0.783	INTERGENIC
3L	951393	3L_951393_SNP [dm3] 3L_951393_SNP [dm6]	G	C	4.114e^-4	0.783	INTRON Glut1
3L	11286476	3L_11286476_SNP [dm3] 3L_11293376_SNP [dm6]	A	C	4.114e^-4	0.783	INTRON CG6175	TF binding site mE1_TFBS_cad
2L	7741773	2L_7741773_SNP [dm3] 2L_7741773_SNP [dm6]	A	T	4.116e^-4	0.783	UPSTREAM Acp1 INTERGENIC
3R	23313172	3R_23313172_SNP [dm3] 3R_27487450_SNP [dm6]	A	G	4.122e^-4	0.783	UPSTREAM Gr98a INTERGENIC
2L	19363123	2L_19363123_SNP [dm3] 2L_19363123_SNP [dm6]	G	C	4.123e^-4	0.783	UTR_5_PRIME dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7931177	3L_7931177_SNP [dm3] 3L_7938077_SNP [dm6]	T	C	4.124e^-4	0.783	DOWNSTREAM Srp9 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15249834	3L_15249834_SNP [dm3] 3L_15256734_SNP [dm6]	A	G	4.128e^-4	0.783	INTERGENIC
3L	12165711	3L_12165711_SNP [dm3] 3L_12172611_SNP [dm6]	G	A	4.139e^-4	0.783	INTRON Rh7
3R	18903544	3R_18903544_SNP [dm3] 3R_23077822_SNP [dm6]	T	G	4.139e^-4	0.783	INTRON CG13830
3L	1535103	3L_1535103_SNP [dm3] 3L_1535103_SNP [dm6]	A	G	4.140e^-4	0.783	UTR_3_PRIME CG12091	TF binding site mE1_TFBS_cad
3L	14063854	3L_14063854_SNP [dm3] 3L_14070754_SNP [dm6]	A	G	4.148e^-4	0.783	UTR_3_PRIME CG32138 DOWNSTREAM CG32138
X	1926431	X_1926431_SNP [dm3] X_2032398_SNP [dm6]	A	C	4.149e^-4	0.783	INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	2276688	2L_2276688_SNP [dm3] 2L_2276688_SNP [dm6]	G	T	4.156e^-4	0.783	INTRON CR43753
3R	26867519	3R_26867519_SNP [dm3] 3R_31041797_SNP [dm6]	C	T	4.165e^-4	0.783	SYNONYMOUS_CODING CanA1
3L	18590659	3L_18590659_SNP [dm3] 3L_18597559_SNP [dm6]	C	T	4.171e^-4	0.783	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2L	1262134	2L_1262134_SNP [dm3] 2L_1262134_SNP [dm6]	T	C	4.182e^-4	0.783	INTRON robo3
2R	13961644	2R_13961644_SNP [dm3] 2R_18074139_SNP [dm6]	T	G	4.186e^-4	0.783	UPSTREAM CR45022 INTRON CG34386
2L	21191574	2L_21191574_SNP [dm3] 2L_21191574_SNP [dm6]	T	C	4.187e^-4	0.783	INTRON Ret	TF binding site BDTNP1_TFBS_dl
2L	9486405	2L_9486405_SNP [dm3] 2L_9486405_SNP [dm6]	T	A	4.187e^-4	0.783	INTERGENIC
2R	10289137	2R_10289137_SNP [dm3] 2R_14401632_SNP [dm6]	A	C	4.188e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11807304	3L_11807304_SNP [dm3] 3L_11814204_SNP [dm6]	C	T	4.190e^-4	0.783	SYNONYMOUS_CODING CG42255
2R	11295412	2R_11295412_SNP [dm3] 2R_15407907_SNP [dm6]	A	T	4.191e^-4	0.783	UPSTREAM Mtk INTRON CG43729
3L	12488592	3L_12488592_SNP [dm3] 3L_12495492_SNP [dm6]	T	A	4.195e^-4	0.783	INTRON CG10657	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	7114114	2L_7114114_SNP [dm3] 2L_7114114_SNP [dm6]	A	T	4.196e^-4	0.783	INTRON Pvf3
3L	2800115	3L_2800115_SNP [dm3] 3L_2800115_SNP [dm6]	C	A	4.197e^-4	0.783	INTRON CG43444
3R	2927866	3R_2927866_SNP [dm3] 3R_7102144_SNP [dm6]	C	T	4.200e^-4	0.783	INTRON Alh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	24559596	3R_24559596_SNP [dm3] 3R_28733874_SNP [dm6]	A	G	4.204e^-4	0.783	UTR_3_PRIME htt
2L	13163495	2L_13163495_SNP [dm3] 2L_13163495_SNP [dm6]	T	C	4.210e^-4	0.783	NON_SYNONYMOUS_CODING DnaJ-H UTR_3_PRIME DnaJ-H DOWNSTREAM CG5204	TF binding site mE1_TFBS_cad
3R	21438504	3R_21438504_SNP [dm3] 3R_25612782_SNP [dm6]	T	G	4.217e^-4	0.783	INTRON Npl4
2R	13749268	2R_13749268_SNP [dm3] 2R_17861763_SNP [dm6]	C	T	4.226e^-4	0.783	SYNONYMOUS_CODING thr DOWNSTREAM CG14490	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18938210	3L_18938210_SNP [dm3] 3L_18945110_SNP [dm6]	C	T	4.228e^-4	0.783	INTRON CG32204
2L	9468190	2L_9468190_SNP [dm3] 2L_9468190_SNP [dm6]	A	G	4.231e^-4	0.783	INTERGENIC
2L	505402	2L_505402_SNP [dm3] 2L_505402_SNP [dm6]	C	T	4.233e^-4	0.783	INTRON ush
X	14111770	X_14111770_SNP [dm3] X_14217737_SNP [dm6]	G	T	4.243e^-4	0.783	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	14111769	X_14111769_SNP [dm3] X_14217736_SNP [dm6]	T	G	4.246e^-4	0.783	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
2L	11461158	2L_11461158_INS [dm3] 2L_11461158_INS [dm6]	T	TT	4.248e^-4	0.783	INTERGENIC
2R	12608983	2R_12608983_DEL [dm3] 2R_16721478_DEL [dm6]	ATA	A	4.255e^-4	0.783	INTRON CG30463
3L	5810594	3L_5810594_SNP [dm3] 3L_5817494_SNP [dm6]	T	A	4.256e^-4	0.783	INTRON vn
X	17084554	X_17084554_SNP [dm3] X_17190521_SNP [dm6]	G	C	4.256e^-4	0.783	SYNONYMOUS_CODING baz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3186884	3R_3186884_SNP [dm3] 3R_7361162_SNP [dm6]	T	A	4.258e^-4	0.783	DOWNSTREAM CG17944 INTERGENIC
X	3385759	X_3385759_SNP [dm3] X_3491726_SNP [dm6]	G	A	4.260e^-4	0.783	SYNONYMOUS_CODING Gas8 DOWNSTREAM CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1013728	3R_1013728_SNP [dm3] 3R_5188006_SNP [dm6]	C	T	4.264e^-4	0.783	INTRON cno
X	6852791	X_6852791_SNP [dm3] X_6958758_SNP [dm6]	A	G	4.266e^-4	0.783	SYNONYMOUS_CODING CG32732 INTRON CG14431
X	17272545	X_17272545_SNP [dm3] X_17378512_SNP [dm6]	A	G	4.268e^-4	0.783	EXON CR43491
2R	9393237	2R_9393237_SNP [dm3] 2R_13505732_SNP [dm6]	C	A	4.274e^-4	0.783	SYNONYMOUS_CODING mars UPSTREAM mip120	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	9929481	X_9929481_SNP [dm3] X_10035448_SNP [dm6]	G	A	4.282e^-4	0.783	SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	15767663	3R_15767663_SNP [dm3] 3R_19941941_SNP [dm6]	T	A	4.291e^-4	0.783	INTRON Hs6st
2L	20623267	2L_20623267_SNP [dm3] 2L_20623267_SNP [dm6]	C	A	4.311e^-4	0.783	INTRON CR44909
2R	17895938	2R_17895938_SNP [dm3] 2R_22008433_SNP [dm6]	A	C	4.317e^-4	0.783	INTRON CG34370
X	2807986	X_2807986_SNP [dm3] X_2913953_SNP [dm6]	C	G	4.319e^-4	0.783	INTRON kirre
2R	19443694	2R_19443694_SNP [dm3] 2R_23556171_SNP [dm6]	T	G	4.342e^-4	0.783	UTR_5_PRIME Rrp4 UPSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25379143	3R_25379143_SNP [dm3] 3R_29553421_SNP [dm6]	C	T	4.346e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	19638135	2R_19638135_SNP [dm3] 2R_23750612_SNP [dm6]	T	C	4.350e^-4	0.783	UPSTREAM CG12491 & 1 other INTERGENIC
3R	15431384	3R_15431384_SNP [dm3] 3R_19605662_SNP [dm6]	T	G	4.351e^-4	0.783	INTRON CG7342
2R	15391854	2R_15391854_SNP [dm3] 2R_19504349_SNP [dm6]	G	T	4.352e^-4	0.783	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	4.366e^-4	0.783	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22434291	3R_22434291_INS [dm3] 3R_26608569_INS [dm6]	A	ATGCAA	4.367e^-4	0.783	DOWNSTREAM CR44951 INTERGENIC
3L	13136592	3L_13136592_SNP [dm3] 3L_13143492_SNP [dm6]	G	A	4.367e^-4	0.783	INTERGENIC
3R	22363803	3R_22363803_SNP [dm3] 3R_26538081_SNP [dm6]	G	A	4.367e^-4	0.783	INTRON scrib
3R	20254310	3R_20254310_SNP [dm3] 3R_24428588_SNP [dm6]	C	T	4.372e^-4	0.783	INTRON nAChRalpha1
2R	9325947	2R_9325947_SNP [dm3] 2R_13438442_SNP [dm6]	A	C	4.372e^-4	0.783	UPSTREAM CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Ubx transposable element FlyBase
X	5870289	X_5870289_SNP [dm3] X_5976256_SNP [dm6]	T	C	4.374e^-4	0.783	INTRON Grip
3R	5807062	3R_5807062_SNP [dm3] 3R_9981340_SNP [dm6]	G	A	4.381e^-4	0.783	INTRON Glut4EF
X	1923320	X_1923320_SNP [dm3] X_2029287_SNP [dm6]	C	A	4.381e^-4	0.783	UPSTREAM mir-4954 INTRON Actn

By genomic position
Variant impact
Gene name

Sample.size Experience 3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results