DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.412e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0748

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.8787	0.0529

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2554 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	2.860e^-7	0.2	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10353395	2R_10353395_SNP [dm3] 2R_14465890_SNP [dm6]	A	T	5.865e^-7	0.2	DOWNSTREAM Oaz INTERGENIC
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	1.041e^-6	0.2	INTERGENIC
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	1.051e^-6	0.2	DOWNSTREAM CG10205 INTERGENIC
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	1.118e^-6	0.2	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	1.213e^-6	0.2	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.232e^-6	0.2	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.232e^-6	0.2	UPSTREAM CG10205 INTERGENIC
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	1.252e^-6	0.2	INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	1.316e^-6	0.2	INTERGENIC
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	1.551e^-6	0.2	INTERGENIC	regulatory region REDfly_CRMs
2L	9080906	2L_9080906_SNP [dm3] 2L_9080906_SNP [dm6]	A	G	1.652e^-6	0.2	INTERGENIC
2L	9089863	2L_9089863_SNP [dm3] 2L_9089863_SNP [dm6]	A	T	1.691e^-6	0.2	DOWNSTREAM Toll-4 INTERGENIC
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	1.732e^-6	0.2	SYNONYMOUS_CODING LamC INTRON ttv
2L	1036620	2L_1036620_SNP [dm3] 2L_1036620_SNP [dm6]	C	T	1.906e^-6	0.2	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_twi
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	1.912e^-6	0.2	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	1.912e^-6	0.2	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6000885	2L_6000885_SNP [dm3] 2L_6000885_SNP [dm6]	T	C	1.921e^-6	0.2	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9079266	2L_9079266_SNP [dm3] 2L_9079266_SNP [dm6]	T	C	2.693e^-6	0.266	INTERGENIC
3R	14125582	3R_14125582_INS [dm3] 3R_18299860_INS [dm6]	A	ACTAAGCCACACA...	3.124e^-6	0.29	UTR_3_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_sens
4	318366	4_318366_DEL [dm3] 4_297740_DEL [dm6]	TT	T	3.252e^-6	0.29	INTRON Syt7	transposable element FlyBase
2L	9082465	2L_9082465_SNP [dm3] 2L_9082465_SNP [dm6]	A	T	3.452e^-6	0.294	INTERGENIC
2R	12879686	2R_12879686_SNP [dm3] 2R_16992181_SNP [dm6]	G	T	4.061e^-6	0.306	INTRON Cbp53E
3L	5242137	3L_5242137_SNP [dm3] 3L_5249037_SNP [dm6]	T	C	4.158e^-6	0.306	UPSTREAM shep INTRON shep
2L	10342237	2L_10342237_SNP [dm3] 2L_10342237_SNP [dm6]	T	C	4.289e^-6	0.306	SPLICE_SITE_REGION CG31715 UPSTREAM Sps2 DOWNSTREAM SamDC INTRON CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	5242209	3L_5242209_DEL [dm3] 3L_5249109_DEL [dm6]	GAG	G	4.711e^-6	0.306	UPSTREAM shep INTRON shep
2L	9089726	2L_9089726_SNP [dm3] 2L_9089726_SNP [dm6]	A	G	4.871e^-6	0.306	DOWNSTREAM Toll-4 INTERGENIC
3L	18296731	3L_18296731_SNP [dm3] 3L_18303631_SNP [dm6]	C	T	5.058e^-6	0.306	UTR_3_PRIME grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1036695	2L_1036695_SNP [dm3] 2L_1036695_SNP [dm6]	G	T	5.239e^-6	0.306	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	5.371e^-6	0.306	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	5.427e^-6	0.306	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9494630	2R_9494630_SNP [dm3] 2R_13607125_SNP [dm6]	T	G	5.494e^-6	0.306	INTERGENIC
2L	9089667	2L_9089667_SNP [dm3] 2L_9089667_SNP [dm6]	G	A	5.554e^-6	0.306	DOWNSTREAM Toll-4 INTERGENIC
2R	10612529	2R_10612529_SNP [dm3] 2R_14725024_SNP [dm6]	T	C	5.689e^-6	0.306	INTERGENIC
3L	5028474	3L_5028474_SNP [dm3] 3L_5028474_SNP [dm6]	C	A	5.718e^-6	0.306	INTRON Con
2L	9084832	2L_9084832_SNP [dm3] 2L_9084832_SNP [dm6]	C	T	5.913e^-6	0.308	INTRON Toll-4
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	6.280e^-6	0.313	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9082510	2L_9082510_SNP [dm3] 2L_9082510_SNP [dm6]	A	T	6.346e^-6	0.313	INTERGENIC
2R	12879718	2R_12879718_SNP [dm3] 2R_16992213_SNP [dm6]	T	G	6.564e^-6	0.316	INTRON Cbp53E
3L	5242237	3L_5242237_SNP [dm3] 3L_5249137_SNP [dm6]	C	G	7.158e^-6	0.326	UPSTREAM shep INTRON shep
2L	10342126	2L_10342126_SNP [dm3] 2L_10342126_SNP [dm6]	G	A	7.208e^-6	0.326	UPSTREAM Sps2 DOWNSTREAM SamDC INTRON CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6002013	2L_6002013_SNP [dm3] 2L_6002013_SNP [dm6]	G	A	7.308e^-6	0.326	UTR_3_PRIME Tsp26A
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	7.487e^-6	0.327	INTERGENIC
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	7.906e^-6	0.331	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	8.025e^-6	0.331	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	8.363e^-6	0.331	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	8.363e^-6	0.331	INTRON kn	TF binding site BDTNP1_TFBS_da
2L	6000175	2L_6000175_DEL [dm3] 2L_6000175_DEL [dm6]	AA	A	8.460e^-6	0.331	UPSTREAM Tsp26A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21034765	3R_21034765_SNP [dm3] 3R_25209043_SNP [dm6]	C	T	8.917e^-6	0.334	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6001104	2L_6001104_SNP [dm3] 2L_6001104_SNP [dm6]	C	A	8.973e^-6	0.334	INTRON Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18381791	2R_18381791_SNP [dm3] 2R_22494286_SNP [dm6]	C	A	9.080e^-6	0.334	UTR_3_PRIME CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad
2R	7316136	2R_7316136_SNP [dm3] 2R_11428631_SNP [dm6]	G	A	9.791e^-6	0.342	UPSTREAM Drip INTRON Drip
3L	481733	3L_481733_SNP [dm3] 3L_481733_SNP [dm6]	T	C	9.902e^-6	0.342	INTRON klar
2R	7315344	2R_7315344_SNP [dm3] 2R_11427839_SNP [dm6]	G	T	1.025e^-5	0.342	UPSTREAM Drip INTRON Drip
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	1.032e^-5	0.342	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
2R	10709770	2R_10709770_SNP [dm3] 2R_14822265_SNP [dm6]	C	T	1.038e^-5	0.342	INTERGENIC
3L	5241981	3L_5241981_SNP [dm3] 3L_5248881_SNP [dm6]	G	A	1.038e^-5	0.342	UPSTREAM shep INTRON shep
2R	17809331	2R_17809331_SNP [dm3] 2R_21921826_SNP [dm6]	G	A	1.075e^-5	0.348	INTRON Fili	TF binding site mE1_TFBS_inv
3R	23467597	3R_23467597_SNP [dm3] 3R_27641875_SNP [dm6]	C	T	1.135e^-5	0.358	UTR_3_PRIME tau DOWNSTREAM mir-1001 INTRON tau
2L	10342092	2L_10342092_SNP [dm3] 2L_10342092_SNP [dm6]	C	G	1.165e^-5	0.358	UPSTREAM Sps2 DOWNSTREAM SamDC INTRON CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11190032	2R_11190032_SNP [dm3] 2R_15302527_SNP [dm6]	T	C	1.172e^-5	0.358	INTRON Trpm
2L	3986225	2L_3986225_SNP [dm3] 2L_3986225_SNP [dm6]	C	T	1.184e^-5	0.358	INTRON fred
2L	8363297	2L_8363297_SNP [dm3] 2L_8363297_SNP [dm6]	G	A	1.214e^-5	0.362	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	21705341	3R_21705341_DEL [dm3] 3R_25879619_DEL [dm6]	AA	A	1.355e^-5	0.394	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9089965	2L_9089965_SNP [dm3] 2L_9089965_SNP [dm6]	G	T	1.406e^-5	0.394	DOWNSTREAM Toll-4 INTERGENIC
2L	6294405	2L_6294405_SNP [dm3] 2L_6294405_SNP [dm6]	C	A	1.414e^-5	0.394	INTRON Ddr
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	1.424e^-5	0.394	INTERGENIC
2L	6001227	2L_6001227_SNP [dm3] 2L_6001227_SNP [dm6]	G	T	1.428e^-5	0.394	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14397718	2R_14397718_SNP [dm3] 2R_18510213_SNP [dm6]	C	A	1.514e^-5	0.412	INTERGENIC
2R	17713410	2R_17713410_SNP [dm3] 2R_21825905_SNP [dm6]	G	A	1.540e^-5	0.413	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9080683	2L_9080683_SNP [dm3] 2L_9080683_SNP [dm6]	C	A	1.595e^-5	0.413	INTERGENIC
2L	9113240	2L_9113240_SNP [dm3] 2L_9113240_SNP [dm6]	T	C	1.606e^-5	0.413	SYNONYMOUS_CODING Or30a
2L	8363296	2L_8363296_SNP [dm3] 2L_8363296_SNP [dm6]	C	A	1.633e^-5	0.413	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	8363414	2L_8363414_SNP [dm3] 2L_8363414_SNP [dm6]	A	G	1.649e^-5	0.413	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	6000969	2L_6000969_SNP [dm3] 2L_6000969_SNP [dm6]	T	C	1.653e^-5	0.413	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	1.677e^-5	0.414	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	1.699e^-5	0.414	INTRON ttv
2L	9090048	2L_9090048_SNP [dm3] 2L_9090048_SNP [dm6]	T	C	1.741e^-5	0.419	DOWNSTREAM Toll-4 INTERGENIC
2L	9096056	2L_9096056_SNP [dm3] 2L_9096056_SNP [dm6]	A	T	1.850e^-5	0.434	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	1.859e^-5	0.434	INTRON sm
3L	1605530	3L_1605530_SNP [dm3] 3L_1605530_SNP [dm6]	A	G	1.906e^-5	0.434	SPLICE_SITE_REGION CG33791 & 1 other INTRON CG33791 & 1 other
2L	8363413	2L_8363413_SNP [dm3] 2L_8363413_SNP [dm6]	T	G	1.906e^-5	0.434	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	26092247	3R_26092247_SNP [dm3] 3R_30266525_SNP [dm6]	C	A	1.939e^-5	0.434	INTERGENIC
3L	13852108	3L_13852108_SNP [dm3] 3L_13859008_SNP [dm6]	G	A	1.945e^-5	0.434	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9086490	2L_9086490_SNP [dm3] 2L_9086490_SNP [dm6]	C	A	1.984e^-5	0.434	SYNONYMOUS_CODING Toll-4
3L	1604304	3L_1604304_SNP [dm3] 3L_1604304_SNP [dm6]	G	A	2.011e^-5	0.434	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	2142085	2R_2142085_SNP [dm3] 2R_6254580_SNP [dm6]	C	A	2.015e^-5	0.434	INTRON Pld	transposable element FlyBase
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	2.041e^-5	0.435	INTERGENIC
2L	9088829	2L_9088829_SNP [dm3] 2L_9088829_SNP [dm6]	C	T	2.087e^-5	0.44	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8363272	2L_8363272_SNP [dm3] 2L_8363272_SNP [dm6]	C	G	2.114e^-5	0.441	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	9192886	2L_9192886_SNP [dm3] 2L_9192886_SNP [dm6]	A	G	2.173e^-5	0.448	INTRON tai
2L	9090028	2L_9090028_SNP [dm3] 2L_9090028_SNP [dm6]	T	G	2.230e^-5	0.454	DOWNSTREAM Toll-4 INTERGENIC
2L	9202525	2L_9202525_SNP [dm3] 2L_9202525_SNP [dm6]	A	C	2.280e^-5	0.454	INTRON tai
2L	6698838	2L_6698838_SNP [dm3] 2L_6698838_SNP [dm6]	T	C	2.301e^-5	0.454	INTRON Tsp
2L	9085157	2L_9085157_SNP [dm3] 2L_9085157_SNP [dm6]	T	A	2.317e^-5	0.454	INTRON Toll-4
X	1880244	X_1880244_SNP [dm3] X_1986211_SNP [dm6]	T	C	2.324e^-5	0.454	INTRON Hr4
2L	8815052	2L_8815052_INS [dm3] 2L_8815052_INS [dm6]	A	ATA	2.421e^-5	0.468	INTERGENIC
2R	6598778	2R_6598778_SNP [dm3] 2R_10711273_SNP [dm6]	A	C	2.470e^-5	0.473	SYNONYMOUS_CODING stan
3R	19585956	3R_19585956_SNP [dm3] 3R_23760234_SNP [dm6]	T	C	2.602e^-5	0.488	DOWNSTREAM Plip & 1 other INTRON CG10219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14273035	2R_14273035_SNP [dm3] 2R_18385530_SNP [dm6]	C	T	2.620e^-5	0.488	SYNONYMOUS_CODING CG15067 DOWNSTREAM CG18107	TF binding site mE1_TFBS_cad
3L	5584716	3L_5584716_SNP [dm3] 3L_5591616_SNP [dm6]	G	T	2.661e^-5	0.488	SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3986222	2L_3986222_SNP [dm3] 2L_3986222_SNP [dm6]	A	T	2.691e^-5	0.488	INTRON fred
2L	9096347	2L_9096347_SNP [dm3] 2L_9096347_SNP [dm6]	T	C	2.715e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9084973	2L_9084973_SNP [dm3] 2L_9084973_SNP [dm6]	C	T	2.725e^-5	0.488	INTRON Toll-4
2L	9080120	2L_9080120_SNP [dm3] 2L_9080120_SNP [dm6]	C	A	2.730e^-5	0.488	INTERGENIC
2R	17839218	2R_17839218_SNP [dm3] 2R_21951713_SNP [dm6]	A	G	2.768e^-5	0.49	SYNONYMOUS_CODING CG13488 UTR_5_PRIME CG13488 INTRON CG13488
2L	9077452	2L_9077452_SNP [dm3] 2L_9077452_SNP [dm6]	C	T	2.814e^-5	0.492	NON_SYNONYMOUS_CODING CG12439
2R	10700594	2R_10700594_SNP [dm3] 2R_14813089_SNP [dm6]	A	G	2.836e^-5	0.492	INTERGENIC
3L	6518570	3L_6518570_DEL [dm3] 3L_6525470_DEL [dm6]	GCTGCCTG	G	2.860e^-5	0.492	INTRON sfl
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	2.943e^-5	0.499	INTRON CG44422
2R	10152110	2R_10152110_SNP [dm3] 2R_14264605_SNP [dm6]	T	C	2.954e^-5	0.499	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	11047308	2R_11047308_SNP [dm3] 2R_15159803_SNP [dm6]	C	G	3.139e^-5	0.526	UPSTREAM CR43831 INTRON igl
2L	6000512	2L_6000512_SNP [dm3] 2L_6000512_SNP [dm6]	C	G	3.195e^-5	0.529	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5589300	3L_5589300_SNP [dm3] 3L_5596200_SNP [dm6]	A	G	3.259e^-5	0.529	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3820649	2R_3820649_SNP [dm3] 2R_7933144_SNP [dm6]	C	A	3.296e^-5	0.529	NON_SYNONYMOUS_CODING drosha UPSTREAM rnh1	TF binding site mE1_TFBS_sens
X	4795919	X_4795919_INS [dm3] X_4901886_INS [dm6]	C	CGCACAC	3.312e^-5	0.529	INTRON CG42594
2L	9092633	2L_9092633_SNP [dm3] 2L_9092633_SNP [dm6]	A	C	3.313e^-5	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	1482364	3L_1482364_SNP [dm3] 3L_1482364_SNP [dm6]	A	C	3.326e^-5	0.529	INTRON stet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6598793	2R_6598793_SNP [dm3] 2R_10711288_SNP [dm6]	C	A	3.376e^-5	0.532	SYNONYMOUS_CODING stan
2L	6001981	2L_6001981_SNP [dm3] 2L_6001981_SNP [dm6]	T	C	3.431e^-5	0.532	UTR_3_PRIME Tsp26A
2L	9300100	2L_9300100_SNP [dm3] 2L_9300100_SNP [dm6]	A	G	3.435e^-5	0.532	UTR_3_PRIME Ggamma30A
3R	23467645	3R_23467645_SNP [dm3] 3R_27641923_SNP [dm6]	C	G	3.566e^-5	0.542	UTR_3_PRIME tau DOWNSTREAM mir-1001 INTRON tau
2R	15815131	2R_15815131_SNP [dm3] 2R_19927626_SNP [dm6]	C	T	3.574e^-5	0.542	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16240787	2R_16240787_SNP [dm3] 2R_20353282_SNP [dm6]	G	T	3.635e^-5	0.542	DOWNSTREAM CG11192 INTERGENIC
2L	9180385	2L_9180385_SNP [dm3] 2L_9180385_SNP [dm6]	C	A	3.660e^-5	0.542	INTRON tai
2R	10353428	2R_10353428_INS [dm3] 2R_14465923_INS [dm6]	G	GAAGGCGG	3.673e^-5	0.542	DOWNSTREAM Oaz INTERGENIC
X	1880265	X_1880265_SNP [dm3] X_1986232_SNP [dm6]	A	G	3.701e^-5	0.542	INTRON Hr4
2R	10186537	2R_10186537_SNP [dm3] 2R_14299032_SNP [dm6]	C	A	3.719e^-5	0.542	UTR_3_PRIME Ih DOWNSTREAM Ih
X	15970388	X_15970388_SNP [dm3] X_16076355_SNP [dm6]	T	G	3.725e^-5	0.542	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	3.770e^-5	0.544	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2R	17713409	2R_17713409_SNP [dm3] 2R_21825904_SNP [dm6]	C	A	3.830e^-5	0.547	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6598865	2R_6598865_SNP [dm3] 2R_10711360_SNP [dm6]	A	G	3.861e^-5	0.547	SYNONYMOUS_CODING stan
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	3.877e^-5	0.547	INTRON Ptp99A
3L	3213571	3L_3213571_SNP [dm3] 3L_3213571_SNP [dm6]	T	C	3.930e^-5	0.55	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_cad
2R	9407913	2R_9407913_SNP [dm3] 2R_13520408_SNP [dm6]	A	G	3.963e^-5	0.551	INTRON Vmat
3L	9204139	3L_9204139_SNP [dm3] 3L_9211039_SNP [dm6]	T	C	4.005e^-5	0.552	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	9348746	2R_9348746_SNP [dm3] 2R_13461241_SNP [dm6]	T	C	4.074e^-5	0.555	INTRON arr
3L	5028484	3L_5028484_SNP [dm3] 3L_5028484_SNP [dm6]	A	G	4.099e^-5	0.555	INTRON Con
3R	11026954	3R_11026954_SNP [dm3] 3R_15201232_SNP [dm6]	A	C	4.133e^-5	0.555	SPLICE_SITE_REGION CG42542 INTRON CG42542
3L	13931821	3L_13931821_SNP [dm3] 3L_13938721_SNP [dm6]	G	C	4.150e^-5	0.555	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16240953	2R_16240953_SNP [dm3] 2R_20353448_SNP [dm6]	G	C	4.174e^-5	0.555	DOWNSTREAM CG11192 INTERGENIC
2L	9085072	2L_9085072_SNP [dm3] 2L_9085072_SNP [dm6]	C	T	4.224e^-5	0.558	INTRON Toll-4
2R	14705646	2R_14705646_SNP [dm3] 2R_18818141_SNP [dm6]	T	A	4.301e^-5	0.563	INTERGENIC
2R	3824500	2R_3824500_SNP [dm3] 2R_7936995_SNP [dm6]	T	A	4.319e^-5	0.563	SYNONYMOUS_CODING CG8728 DOWNSTREAM drosha	TF binding site mE1_TFBS_chinmo
2L	5712219	2L_5712219_SNP [dm3] 2L_5712219_SNP [dm6]	C	T	4.405e^-5	0.57	INTRON CG7236
2L	9086695	2L_9086695_SNP [dm3] 2L_9086695_SNP [dm6]	G	A	4.444e^-5	0.571	NON_SYNONYMOUS_CODING Toll-4
3R	15604283	3R_15604283_SNP [dm3] 3R_19778561_SNP [dm6]	G	A	4.523e^-5	0.574	UPSTREAM CG11391 INTERGENIC
2L	9079098	2L_9079098_SNP [dm3] 2L_9079098_SNP [dm6]	G	C	4.528e^-5	0.574	INTERGENIC
2L	9086960	2L_9086960_SNP [dm3] 2L_9086960_SNP [dm6]	T	G	4.670e^-5	0.588	INTRON Toll-4
3L	17999169	3L_17999169_SNP [dm3] 3L_18006069_SNP [dm6]	T	A	4.702e^-5	0.588	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6000485	2L_6000485_SNP [dm3] 2L_6000485_SNP [dm6]	C	T	4.821e^-5	0.597	SYNONYMOUS_CODING Tsp26A UPSTREAM lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13931818	3L_13931818_SNP [dm3] 3L_13938718_SNP [dm6]	A	C	4.886e^-5	0.597	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14179379	2R_14179379_SNP [dm3] 2R_18291874_SNP [dm6]	C	T	4.898e^-5	0.597	UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13828481	2R_13828481_SNP [dm3] 2R_17940976_SNP [dm6]	T	G	4.944e^-5	0.597	INTERGENIC
3R	15833028	3R_15833028_SNP [dm3] 3R_20007306_SNP [dm6]	T	C	4.950e^-5	0.597	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19895131	3R_19895131_SNP [dm3] 3R_24069409_SNP [dm6]	C	T	4.997e^-5	0.597	INTRON 4EHP
3L	5028482	3L_5028482_SNP [dm3] 3L_5028482_SNP [dm6]	C	T	5.009e^-5	0.597	INTRON Con
2L	10340646	2L_10340646_SNP [dm3] 2L_10340646_SNP [dm6]	T	A	5.152e^-5	0.597	SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
3R	25403393	3R_25403393_SNP [dm3] 3R_29577671_SNP [dm6]	C	A	5.170e^-5	0.597	INTERGENIC
2L	6002492	2L_6002492_DEL [dm3] 2L_6002492_DEL [dm6]	ATGATCACACCACGAATCTC...	A	5.214e^-5	0.597	UTR_3_PRIME Tsp26A
2L	6240597	2L_6240597_SNP [dm3] 2L_6240597_SNP [dm6]	A	T	5.283e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	14125440	3R_14125440_SNP [dm3] 3R_18299718_SNP [dm6]	C	A	5.348e^-5	0.597	SYNONYMOUS_CODING Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8209414	3L_8209414_SNP [dm3] 3L_8216314_SNP [dm6]	C	A	5.431e^-5	0.597	DOWNSTREAM CG8012 INTERGENIC
2L	2541806	2L_2541806_DEL [dm3] 2L_2541806_DEL [dm6]	TG	T	5.456e^-5	0.597	INTERGENIC
2L	9082542	2L_9082542_SNP [dm3] 2L_9082542_SNP [dm6]	T	C	5.462e^-5	0.597	INTERGENIC
2R	9494565	2R_9494565_SNP [dm3] 2R_13607060_SNP [dm6]	T	C	5.473e^-5	0.597	INTERGENIC
2L	9082409	2L_9082409_SNP [dm3] 2L_9082409_SNP [dm6]	A	C	5.492e^-5	0.597	INTERGENIC
2L	9086698	2L_9086698_SNP [dm3] 2L_9086698_SNP [dm6]	A	G	5.533e^-5	0.597	NON_SYNONYMOUS_CODING Toll-4
2R	17713392	2R_17713392_SNP [dm3] 2R_21825887_SNP [dm6]	A	G	5.549e^-5	0.597	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15281196	3R_15281196_SNP [dm3] 3R_19455474_SNP [dm6]	A	T	5.550e^-5	0.597	INTRON CG31221
2R	16426836	2R_16426836_SNP [dm3] 2R_20539331_SNP [dm6]	A	G	5.566e^-5	0.597	UPSTREAM CG13427 DOWNSTREAM CG13428 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13127720	3L_13127720_SNP [dm3] 3L_13134620_SNP [dm6]	G	T	5.573e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15833394	3R_15833394_SNP [dm3] 3R_20007672_SNP [dm6]	C	T	5.594e^-5	0.597	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23778562	3R_23778562_SNP [dm3] 3R_27952840_SNP [dm6]	T	C	5.598e^-5	0.597	SYNONYMOUS_CODING CG4951 DOWNSTREAM Gp93	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9089946	2L_9089946_SNP [dm3] 2L_9089946_SNP [dm6]	A	C	5.648e^-5	0.597	DOWNSTREAM Toll-4 INTERGENIC
2R	11189961	2R_11189961_SNP [dm3] 2R_15302456_SNP [dm6]	C	T	5.649e^-5	0.597	INTRON Trpm
2R	17376428	2R_17376428_SNP [dm3] 2R_21488923_SNP [dm6]	C	A	5.666e^-5	0.597	INTRON Fkbp14
3R	10873414	3R_10873414_SNP [dm3] 3R_15047692_SNP [dm6]	C	T	5.685e^-5	0.597	INTERGENIC
2L	9085114	2L_9085114_SNP [dm3] 2L_9085114_SNP [dm6]	C	T	5.753e^-5	0.597	INTRON Toll-4
2R	13948918	2R_13948918_SNP [dm3] 2R_18061413_SNP [dm6]	T	C	5.773e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4744991	2L_4744991_SNP [dm3] 2L_4744991_SNP [dm6]	C	A	5.783e^-5	0.597	INTRON CG15630
2L	9202535	2L_9202535_SNP [dm3] 2L_9202535_SNP [dm6]	C	T	5.791e^-5	0.597	INTRON tai
3R	13164462	3R_13164462_SNP [dm3] 3R_17338740_SNP [dm6]	G	A	5.867e^-5	0.598	INTRON beat-IIa
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	5.870e^-5	0.598	INTRON CG8547	TF binding site mE1_TFBS_cad
3L	12909022	3L_12909022_SNP [dm3] 3L_12915922_SNP [dm6]	A	G	5.899e^-5	0.598	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10917741	3R_10917741_SNP [dm3] 3R_15092019_SNP [dm6]	G	T	6.025e^-5	0.608	INTRON CG6966	regulatory region REDfly_CRMs
3R	13164477	3R_13164477_SNP [dm3] 3R_17338755_SNP [dm6]	A	G	6.151e^-5	0.613	INTRON beat-IIa
3L	18147184	3L_18147184_SNP [dm3] 3L_18154084_SNP [dm6]	A	G	6.198e^-5	0.613	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18295544	3L_18295544_MNP [dm3] 3L_18302444_MNP [dm6]	GTG	AAT	6.256e^-5	0.613	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	6264867	2R_6264867_SNP [dm3] 2R_10377362_SNP [dm6]	T	A	6.271e^-5	0.613	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
3R	26061019	3R_26061019_SNP [dm3] 3R_30235297_SNP [dm6]	A	T	6.283e^-5	0.613	INTERGENIC
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	6.346e^-5	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5242249	3L_5242249_SNP [dm3] 3L_5249149_SNP [dm6]	C	G	6.346e^-5	0.613	UPSTREAM shep INTRON shep
2L	20260743	2L_20260743_SNP [dm3] 2L_20260743_SNP [dm6]	C	T	6.352e^-5	0.613	INTERGENIC
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	6.374e^-5	0.613	INTRON Traf4	TF binding site mE1_TFBS_cad
3R	2366528	3R_2366528_SNP [dm3] 3R_6540806_SNP [dm6]	A	G	6.526e^-5	0.621	INTRON dpr11	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14419041	2R_14419041_SNP [dm3] 2R_18531536_SNP [dm6]	G	A	6.526e^-5	0.621	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18295569	3L_18295569_SNP [dm3] 3L_18302469_SNP [dm6]	T	C	6.588e^-5	0.621	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7315395	2R_7315395_SNP [dm3] 2R_11427890_SNP [dm6]	A	G	6.629e^-5	0.621	UPSTREAM Drip INTRON Drip
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	6.640e^-5	0.621	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	21034818	3R_21034818_SNP [dm3] 3R_25209096_SNP [dm6]	C	T	6.741e^-5	0.621	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19110381	2L_19110381_SNP [dm3] 2L_19110381_SNP [dm6]	A	T	6.760e^-5	0.621	DOWNSTREAM CR44905 INTRON amd
2L	4007508	2L_4007508_SNP [dm3] 2L_4007508_SNP [dm6]	C	T	6.791e^-5	0.621	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
X	13406129	X_13406129_SNP [dm3] X_13512096_SNP [dm6]	T	C	6.828e^-5	0.621	INTRON Neto	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11529459	3L_11529459_SNP [dm3] 3L_11536359_SNP [dm6]	A	T	6.835e^-5	0.621	INTRON Mob2	TF binding site mE1_TFBS_HSA
3R	11515489	3R_11515489_SNP [dm3] 3R_15689767_SNP [dm6]	G	A	6.860e^-5	0.621	UTR_3_PRIME pxb
3L	6939789	3L_6939789_SNP [dm3] 3L_6946689_SNP [dm6]	A	G	6.877e^-5	0.621	INTRON tow
2L	14458135	2L_14458135_SNP [dm3] 2L_14458135_SNP [dm6]	C	A	6.910e^-5	0.621	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	14892675	2R_14892675_SNP [dm3] 2R_19005170_SNP [dm6]	T	C	6.942e^-5	0.621	INTRON tn
3R	10074303	3R_10074303_SNP [dm3] 3R_14248581_SNP [dm6]	T	A	6.948e^-5	0.621	INTERGENIC
3L	12250387	3L_12250387_SNP [dm3] 3L_12257287_SNP [dm6]	T	C	7.008e^-5	0.623	INTRON app
3L	18295550	3L_18295550_SNP [dm3] 3L_18302450_SNP [dm6]	T	C	7.128e^-5	0.629	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7316275	2R_7316275_SNP [dm3] 2R_11428770_SNP [dm6]	C	G	7.187e^-5	0.629	UPSTREAM Drip INTRON Drip
2L	9252651	2L_9252651_SNP [dm3] 2L_9252651_SNP [dm6]	T	C	7.191e^-5	0.629	SYNONYMOUS_CODING borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11529438	3L_11529438_SNP [dm3] 3L_11536338_SNP [dm6]	G	A	7.241e^-5	0.629	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	8363832	2L_8363832_SNP [dm3] 2L_8363832_SNP [dm6]	G	A	7.249e^-5	0.629	SYNONYMOUS_CODING RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
3L	11529443	3L_11529443_INS [dm3] 3L_11536343_INS [dm6]	C	CATTC	7.362e^-5	0.634	INTRON Mob2	TF binding site mE1_TFBS_HSA
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	7.389e^-5	0.634	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	20658905	3R_20658905_SNP [dm3] 3R_24833183_SNP [dm6]	T	G	7.428e^-5	0.634	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6352482	3L_6352482_SNP [dm3] 3L_6359382_SNP [dm6]	C	A	7.529e^-5	0.634	INTERGENIC
3L	13931835	3L_13931835_SNP [dm3] 3L_13938735_SNP [dm6]	T	C	7.547e^-5	0.634	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14457964	2L_14457964_SNP [dm3] 2L_14457964_SNP [dm6]	T	G	7.567e^-5	0.634	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	19763546	X_19763546_SNP [dm3] X_19869513_SNP [dm6]	A	G	7.594e^-5	0.634	SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16067453	3L_16067453_SNP [dm3] 3L_16074353_SNP [dm6]	G	T	7.633e^-5	0.634	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
X	20317573	X_20317573_SNP [dm3] X_20446546_SNP [dm6]	T	G	7.764e^-5	0.634	NON_SYNONYMOUS_CODING CG42578 DOWNSTREAM CG1695
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	7.778e^-5	0.634	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	14459025	2L_14459025_SNP [dm3] 2L_14459025_SNP [dm6]	G	A	7.799e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	9352201	3L_9352201_SNP [dm3] 3L_9359101_SNP [dm6]	A	G	7.875e^-5	0.634	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	11046959	2R_11046959_SNP [dm3] 2R_15159454_SNP [dm6]	T	A	7.877e^-5	0.634	INTRON igl EXON CR43831
3L	14567878	3L_14567878_SNP [dm3] 3L_14574778_SNP [dm6]	T	C	7.902e^-5	0.634	INTERGENIC
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	7.905e^-5	0.634	INTRON CG31690
3L	12424320	3L_12424320_SNP [dm3] 3L_12431220_SNP [dm6]	A	C	7.935e^-5	0.634	INTRON toe
2R	15575738	2R_15575738_SNP [dm3] 2R_19688233_SNP [dm6]	C	A	7.943e^-5	0.634	UPSTREAM CG15128 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	7.951e^-5	0.634	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	19007058	2R_19007058_INS [dm3] 2R_23119535_INS [dm6]	C	CACTAGCATGT...	7.981e^-5	0.634	INTERGENIC
3R	26060516	3R_26060516_SNP [dm3] 3R_30234794_SNP [dm6]	T	C	7.987e^-5	0.634	INTERGENIC
2L	6000449	2L_6000449_SNP [dm3] 2L_6000449_SNP [dm6]	C	T	8.044e^-5	0.634	SYNONYMOUS_CODING Tsp26A UPSTREAM lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26119509	3R_26119509_SNP [dm3] 3R_30293787_SNP [dm6]	A	T	8.047e^-5	0.634	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9413211	X_9413211_SNP [dm3] X_9519178_SNP [dm6]	T	G	8.161e^-5	0.64	INTRON CG32700
2L	9082346	2L_9082346_SNP [dm3] 2L_9082346_SNP [dm6]	T	C	8.249e^-5	0.64	INTERGENIC
2R	5356078	2R_5356078_SNP [dm3] 2R_9468573_SNP [dm6]	T	A	8.258e^-5	0.64	INTRON Camta
2R	14150720	2R_14150720_SNP [dm3] 2R_18263215_SNP [dm6]	A	C	8.260e^-5	0.64	INTERGENIC
2R	10727458	2R_10727458_SNP [dm3] 2R_14839953_SNP [dm6]	T	C	8.329e^-5	0.643	INTERGENIC
2R	8588657	2R_8588657_SNP [dm3] 2R_12701152_SNP [dm6]	A	C	8.381e^-5	0.644	DOWNSTREAM wuc INTERGENIC
3R	20651641	3R_20651641_SNP [dm3] 3R_24825919_SNP [dm6]	T	A	8.517e^-5	0.652	STOP_LOST CG43166 UPSTREAM niki DOWNSTREAM RabX4
2L	9095890	2L_9095890_SNP [dm3] 2L_9095890_SNP [dm6]	T	C	8.570e^-5	0.653	INTERGENIC
3L	6346503	3L_6346503_SNP [dm3] 3L_6353403_SNP [dm6]	G	A	8.605e^-5	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	9585650	X_9585650_SNP [dm3] X_9691617_SNP [dm6]	T	C	8.645e^-5	0.654	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	6679302	3L_6679302_SNP [dm3] 3L_6686202_SNP [dm6]	G	T	8.757e^-5	0.66	INTERGENIC
3R	20658904	3R_20658904_SNP [dm3] 3R_24833182_SNP [dm6]	A	T	8.891e^-5	0.664	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9929023	X_9929023_SNP [dm3] X_10034990_SNP [dm6]	T	A	8.966e^-5	0.664	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
2R	17285188	2R_17285188_SNP [dm3] 2R_21397683_SNP [dm6]	A	C	9.076e^-5	0.664	INTRON Sdc
3R	7768663	3R_7768663_SNP [dm3] 3R_11942941_SNP [dm6]	C	A	9.097e^-5	0.664	INTRON Cad87A
3L	4777072	3L_4777072_SNP [dm3] 3L_4777072_SNP [dm6]	T	A	9.218e^-5	0.664	INTRON RhoGEF64C
2R	11661653	2R_11661653_SNP [dm3] 2R_15774148_SNP [dm6]	G	C	9.236e^-5	0.664	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	9635443	2R_9635443_SNP [dm3] 2R_13747938_SNP [dm6]	G	A	9.251e^-5	0.664	UTR_3_PRIME fas
2R	14179354	2R_14179354_SNP [dm3] 2R_18291849_SNP [dm6]	C	T	9.252e^-5	0.664	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9089891	2L_9089891_SNP [dm3] 2L_9089891_SNP [dm6]	C	T	9.287e^-5	0.664	DOWNSTREAM Toll-4 INTERGENIC
2L	9089898	2L_9089898_SNP [dm3] 2L_9089898_SNP [dm6]	G	T	9.287e^-5	0.664	DOWNSTREAM Toll-4 INTERGENIC
2L	10340637	2L_10340637_SNP [dm3] 2L_10340637_SNP [dm6]	C	T	9.438e^-5	0.664	SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
X	18771004	X_18771004_SNP [dm3] X_18876971_SNP [dm6]	G	T	9.472e^-5	0.664	SYNONYMOUS_CODING CG34401	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	18295590	3L_18295590_SNP [dm3] 3L_18302490_SNP [dm6]	A	T	9.512e^-5	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	9.547e^-5	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	12907394	3R_12907394_SNP [dm3] 3R_17081672_SNP [dm6]	C	A	9.616e^-5	0.664	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20649755	3R_20649755_SNP [dm3] 3R_24824033_SNP [dm6]	C	T	9.630e^-5	0.664	NON_SYNONYMOUS_CODING niki	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24970783	3R_24970783_SNP [dm3] 3R_29145061_SNP [dm6]	T	C	9.645e^-5	0.664	SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
X	10888442	X_10888442_SNP [dm3] X_10994409_SNP [dm6]	T	A	9.645e^-5	0.664	INTRON CG42339
3R	19780254	3R_19780254_SNP [dm3] 3R_23954532_SNP [dm6]	C	T	9.655e^-5	0.664	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9798936	3R_9798936_SNP [dm3] 3R_13973214_SNP [dm6]	T	C	9.739e^-5	0.664	DOWNSTREAM CR43460 INTRON rdx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	9.808e^-5	0.664	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9087658	2L_9087658_SNP [dm3] 2L_9087658_SNP [dm6]	G	T	9.878e^-5	0.664	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi
X	2981611	X_2981611_SNP [dm3] X_3087578_SNP [dm6]	T	C	9.882e^-5	0.664	INTRON kirre	TF binding site BDTNP1_TFBS_twi
3R	24934083	3R_24934083_SNP [dm3] 3R_29108361_SNP [dm6]	A	C	9.886e^-5	0.664	UTR_3_PRIME CG11873 DOWNSTREAM alpha-Man-Ib
3R	11455139	3R_11455139_SNP [dm3] 3R_15629417_SNP [dm6]	C	G	9.928e^-5	0.664	INTERGENIC
X	13681379	X_13681379_SNP [dm3] X_13787346_SNP [dm6]	G	A	9.985e^-5	0.664	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	6000685	2L_6000685_SNP [dm3] 2L_6000685_SNP [dm6]	T	C	9.999e^-5	0.664	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	1.003e^-4	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18295609	3L_18295609_SNP [dm3] 3L_18302509_SNP [dm6]	A	G	1.004e^-4	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3271417	2L_3271417_SNP [dm3] 2L_3271417_SNP [dm6]	A	G	1.004e^-4	0.664	NON_SYNONYMOUS_CODING CG3347
X	2686824	X_2686824_DEL [dm3] X_2792791_DEL [dm6]	AA	A	1.010e^-4	0.664	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11751169	3L_11751169_SNP [dm3] 3L_11758069_SNP [dm6]	C	T	1.017e^-4	0.664	INTRON CG6024
3L	8354552	3L_8354552_SNP [dm3] 3L_8361452_SNP [dm6]	T	A	1.018e^-4	0.664	UPSTREAM Idh INTERGENIC
2L	20440870	2L_20440870_SNP [dm3] 2L_20440870_SNP [dm6]	T	C	1.031e^-4	0.664	INTRON CG31688
3R	15833047	3R_15833047_SNP [dm3] 3R_20007325_SNP [dm6]	A	G	1.032e^-4	0.664	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6755255	2R_6755255_SNP [dm3] 2R_10867750_SNP [dm6]	T	G	1.032e^-4	0.664	INTRON CG30015
3R	19780300	3R_19780300_SNP [dm3] 3R_23954578_SNP [dm6]	T	C	1.035e^-4	0.664	NON_SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7872259	3L_7872259_SNP [dm3] 3L_7879159_SNP [dm6]	A	T	1.035e^-4	0.664	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6871123	2R_6871123_SNP [dm3] 2R_10983618_SNP [dm6]	T	G	1.042e^-4	0.664	INTRON luna
3R	15832996	3R_15832996_SNP [dm3] 3R_20007274_SNP [dm6]	T	C	1.053e^-4	0.664	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26678671	3R_26678671_SNP [dm3] 3R_30852949_SNP [dm6]	G	A	1.061e^-4	0.664	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14705688	2R_14705688_SNP [dm3] 2R_18818183_SNP [dm6]	G	A	1.072e^-4	0.664	INTERGENIC
3L	11877996	3L_11877996_SNP [dm3] 3L_11884896_SNP [dm6]	A	G	1.074e^-4	0.664	INTRON CG44837
2R	16240789	2R_16240789_SNP [dm3] 2R_20353284_SNP [dm6]	A	G	1.082e^-4	0.664	DOWNSTREAM CG11192 INTERGENIC
4	911048	4_911048_SNP [dm3] 4_890422_SNP [dm6]	T	A	1.083e^-4	0.664	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
3L	18295612	3L_18295612_SNP [dm3] 3L_18302512_SNP [dm6]	T	C	1.083e^-4	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	1.085e^-4	0.664	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
3R	10873417	3R_10873417_SNP [dm3] 3R_15047695_SNP [dm6]	C	T	1.088e^-4	0.664	INTERGENIC
2R	12677099	2R_12677099_SNP [dm3] 2R_16789594_SNP [dm6]	T	C	1.090e^-4	0.664	SYNONYMOUS_CODING CG5522
2R	10505737	2R_10505737_SNP [dm3] 2R_14618232_SNP [dm6]	A	T	1.091e^-4	0.664	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	1.092e^-4	0.664	INTRON CG32479
2L	5504141	2L_5504141_SNP [dm3] 2L_5504141_SNP [dm6]	C	G	1.094e^-4	0.664	INTERGENIC
X	13681445	X_13681445_SNP [dm3] X_13787412_SNP [dm6]	A	G	1.098e^-4	0.664	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	1.101e^-4	0.664	INTRON CG31690
2L	14401653	2L_14401653_SNP [dm3] 2L_14401653_SNP [dm6]	A	G	1.112e^-4	0.664	INTRON elB
2L	19111303	2L_19111303_SNP [dm3] 2L_19111303_SNP [dm6]	G	C	1.112e^-4	0.664	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	5242186	3L_5242186_SNP [dm3] 3L_5249086_SNP [dm6]	C	A	1.116e^-4	0.664	UPSTREAM shep INTRON shep
2L	1094900	2L_1094900_SNP [dm3] 2L_1094900_SNP [dm6]	C	T	1.117e^-4	0.664	INTRON CG4629
3L	12445804	3L_12445804_SNP [dm3] 3L_12452704_SNP [dm6]	G	A	1.120e^-4	0.664	INTERGENIC
2L	611996	2L_611996_SNP [dm3] 2L_611996_SNP [dm6]	G	C	1.131e^-4	0.664	INTERGENIC
2L	9589643	2L_9589643_SNP [dm3] 2L_9589643_SNP [dm6]	A	T	1.133e^-4	0.664	UTR_5_PRIME CG3841 INTRON CG3841	regulatory region REDfly_CRMs
3L	8518279	3L_8518279_SNP [dm3] 3L_8525179_SNP [dm6]	G	A	1.135e^-4	0.664	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	1.137e^-4	0.664	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	17376426	2R_17376426_INS [dm3] 2R_21488921_INS [dm6]	A	AGGTGTGTGTGTAGTTTATG...	1.139e^-4	0.664	INTRON Fkbp14
3L	11529419	3L_11529419_SNP [dm3] 3L_11536319_SNP [dm6]	T	A	1.140e^-4	0.664	INTRON Mob2	TF binding site mE1_TFBS_HSA
X	17456250	X_17456250_SNP [dm3] X_17562217_SNP [dm6]	C	A	1.142e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	1.142e^-4	0.664	INTRON CG8547
2R	13191445	2R_13191445_SNP [dm3] 2R_17303940_SNP [dm6]	T	C	1.144e^-4	0.664	INTRON mbl
2L	18540405	2L_18540405_SNP [dm3] 2L_18540405_SNP [dm6]	A	G	1.145e^-4	0.664	INTRON Pde11
2R	6598784	2R_6598784_SNP [dm3] 2R_10711279_SNP [dm6]	C	A	1.147e^-4	0.664	SYNONYMOUS_CODING stan
2R	5537090	2R_5537090_SNP [dm3] 2R_9649585_SNP [dm6]	G	T	1.149e^-4	0.664	INTRON Mmp2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8426852	2R_8426852_SNP [dm3] 2R_12539347_SNP [dm6]	G	A	1.162e^-4	0.664	INTRON fra
3R	15833054	3R_15833054_SNP [dm3] 3R_20007332_SNP [dm6]	G	T	1.164e^-4	0.664	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8750839	X_8750839_SNP [dm3] X_8856806_SNP [dm6]	A	C	1.172e^-4	0.664	INTRON CG12075
2R	10724961	2R_10724961_SNP [dm3] 2R_14837456_SNP [dm6]	C	T	1.176e^-4	0.664	INTERGENIC
3L	1252490	3L_1252490_SNP [dm3] 3L_1252490_SNP [dm6]	T	C	1.177e^-4	0.664	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	26572579	3R_26572579_SNP [dm3] 3R_30746857_SNP [dm6]	A	G	1.189e^-4	0.664	UPSTREAM Npc2h EXON CR43238
X	11314428	X_11314428_INS [dm3] X_11420395_INS [dm6]	A	AA	1.194e^-4	0.664	INTERGENIC
2L	8363215	2L_8363215_SNP [dm3] 2L_8363215_SNP [dm6]	T	A	1.200e^-4	0.664	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	27375041	3R_27375041_SNP [dm3] 3R_31549319_SNP [dm6]	T	A	1.204e^-4	0.664	UTR_5_PRIME nyo	TF binding site mE1_TFBS_inv
3R	20926424	3R_20926424_SNP [dm3] 3R_25100702_SNP [dm6]	G	C	1.218e^-4	0.664	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096 DOWNSTREAM CG33096	TF binding site mE1_TFBS_sens
2L	9589646	2L_9589646_DEL [dm3] 2L_9589646_DEL [dm6]	TAT	T	1.228e^-4	0.664	SPLICE_SITE_REGION CG3841 UTR_5_PRIME CG3841 INTRON CG3841	regulatory region REDfly_CRMs
3L	6292465	3L_6292465_SNP [dm3] 3L_6299365_SNP [dm6]	G	T	1.232e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2541904	2L_2541904_SNP [dm3] 2L_2541904_SNP [dm6]	G	A	1.234e^-4	0.664	INTERGENIC
2R	19469413	2R_19469413_SNP [dm3] 2R_23581890_SNP [dm6]	A	T	1.236e^-4	0.664	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	17462316	X_17462316_SNP [dm3] X_17568283_SNP [dm6]	T	C	1.245e^-4	0.664	INTRON ppk23
3L	6356224	3L_6356224_SNP [dm3] 3L_6363124_SNP [dm6]	G	T	1.249e^-4	0.664	INTERGENIC
3L	6679342	3L_6679342_SNP [dm3] 3L_6686242_SNP [dm6]	C	T	1.250e^-4	0.664	INTERGENIC
3L	12250373	3L_12250373_SNP [dm3] 3L_12257273_SNP [dm6]	A	C	1.251e^-4	0.664	INTRON app
X	17462301	X_17462301_SNP [dm3] X_17568268_SNP [dm6]	C	A	1.262e^-4	0.664	INTRON ppk23
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	1.267e^-4	0.664	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	6693274	3L_6693274_SNP [dm3] 3L_6700174_SNP [dm6]	A	T	1.267e^-4	0.664	INTRON SP1173
X	12295490	X_12295490_SNP [dm3] X_12401457_SNP [dm6]	G	C	1.270e^-4	0.664	INTERGENIC
2R	13073883	2R_13073883_SNP [dm3] 2R_17186378_SNP [dm6]	T	A	1.271e^-4	0.664	DOWNSTREAM CR44387 INTERGENIC
2L	19311088	2L_19311088_SNP [dm3] 2L_19311088_SNP [dm6]	G	C	1.283e^-4	0.664	INTERGENIC
2R	18843807	2R_18843807_SNP [dm3] 2R_22956284_SNP [dm6]	G	C	1.283e^-4	0.664	DOWNSTREAM CR44780 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9687059	2L_9687059_INS [dm3] 2L_9687059_INS [dm6]	A	ATATTTCA	1.283e^-4	0.664	INTRON Pka-C1
2L	9086023	2L_9086023_SNP [dm3] 2L_9086023_SNP [dm6]	G	A	1.293e^-4	0.664	INTRON Toll-4
2R	7982903	2R_7982903_SNP [dm3] 2R_12095398_SNP [dm6]	T	C	1.294e^-4	0.664	INTRON jeb
2R	14883782	2R_14883782_DEL [dm3] 2R_18996277_DEL [dm6]	CCC	C	1.296e^-4	0.664	INTRON tn
3R	19584789	3R_19584789_SNP [dm3] 3R_23759067_SNP [dm6]	A	T	1.296e^-4	0.664	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12316367	3L_12316367_SNP [dm3] 3L_12323267_SNP [dm6]	A	T	1.298e^-4	0.664	INTERGENIC
2L	5903195	2L_5903195_SNP [dm3] 2L_5903195_SNP [dm6]	G	A	1.302e^-4	0.664	UTR_3_PRIME CG9021 DOWNSTREAM CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
4	282921	4_282921_DEL [dm3] 4_262295_DEL [dm6]	TT	T	1.303e^-4	0.664	UTR_3_PRIME RhoGAP102A INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10372795	2R_10372795_SNP [dm3] 2R_14485290_SNP [dm6]	A	C	1.303e^-4	0.664	INTRON L	TF binding site mE1_TFBS_cad
2R	6146380	2R_6146380_SNP [dm3] 2R_10258875_SNP [dm6]	G	C	1.306e^-4	0.664	INTRON CG12911	TF binding site mE1_TFBS_cad
3R	19250081	3R_19250081_SNP [dm3] 3R_23424359_SNP [dm6]	C	T	1.308e^-4	0.664	INTRON CG4374
2R	14015281	2R_14015281_SNP [dm3] 2R_18127776_SNP [dm6]	C	T	1.322e^-4	0.664	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6382779	3L_6382779_DEL [dm3] 3L_6389679_DEL [dm6]	GT	A	1.330e^-4	0.664	INTERGENIC
3R	21034401	3R_21034401_DEL [dm3] 3R_25208679_DEL [dm6]	CT	C	1.332e^-4	0.664	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	1.333e^-4	0.664	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9694122	3R_9694122_SNP [dm3] 3R_13868400_SNP [dm6]	C	T	1.336e^-4	0.664	INTRON E5	TF binding site mE1_TFBS_cad
2R	16241040	2R_16241040_SNP [dm3] 2R_20353535_SNP [dm6]	C	T	1.339e^-4	0.664	DOWNSTREAM CG11192 INTERGENIC
3L	16272487	3L_16272487_SNP [dm3] 3L_16279387_SNP [dm6]	G	T	1.344e^-4	0.664	UPSTREAM CG13050 INTERGENIC
2R	12448010	2R_12448010_SNP [dm3] 2R_16560505_SNP [dm6]	G	T	1.345e^-4	0.664	SYNONYMOUS_CODING DAT
3R	15833423	3R_15833423_SNP [dm3] 3R_20007701_SNP [dm6]	A	G	1.345e^-4	0.664	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	18147174	3L_18147174_SNP [dm3] 3L_18154074_SNP [dm6]	C	T	1.350e^-4	0.664	DOWNSTREAM CG7330 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6568910	2R_6568910_SNP [dm3] 2R_10681405_SNP [dm6]	A	C	1.352e^-4	0.664	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21034404	3R_21034404_SNP [dm3] 3R_25208682_SNP [dm6]	A	C	1.353e^-4	0.664	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12250454	3L_12250454_SNP [dm3] 3L_12257354_SNP [dm6]	T	C	1.358e^-4	0.664	INTRON app
3R	21034741	3R_21034741_SNP [dm3] 3R_25209019_SNP [dm6]	A	G	1.359e^-4	0.664	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16350759	3L_16350759_SNP [dm3] 3L_16357659_SNP [dm6]	A	G	1.360e^-4	0.664	INTRON CG45057
2L	18767340	2L_18767340_SNP [dm3] 2L_18767340_SNP [dm6]	G	T	1.360e^-4	0.664	INTRON ham
2R	8444418	2R_8444418_SNP [dm3] 2R_12556913_SNP [dm6]	T	C	1.363e^-4	0.664	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11047778	2R_11047778_SNP [dm3] 2R_15160273_SNP [dm6]	T	G	1.363e^-4	0.664	UPSTREAM CR43831 INTRON igl
2R	9348929	2R_9348929_SNP [dm3] 2R_13461424_SNP [dm6]	A	T	1.363e^-4	0.664	INTRON arr
2L	1672899	2L_1672899_SNP [dm3] 2L_1672899_SNP [dm6]	A	G	1.364e^-4	0.664	INTRON chinmo
2L	20260736	2L_20260736_SNP [dm3] 2L_20260736_SNP [dm6]	G	A	1.367e^-4	0.664	INTERGENIC
2L	3274383	2L_3274383_SNP [dm3] 2L_3274383_SNP [dm6]	A	G	1.368e^-4	0.664	INTERGENIC
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	1.371e^-4	0.664	INTERGENIC
3R	11436909	3R_11436909_SNP [dm3] 3R_15611187_SNP [dm6]	C	A	1.377e^-4	0.664	INTERGENIC
X	20266332	X_20266332_SNP [dm3] X_20395305_SNP [dm6]	C	G	1.379e^-4	0.664	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	1.382e^-4	0.664	SYNONYMOUS_CODING aly
3L	18274508	3L_18274508_DEL [dm3] 3L_18281408_DEL [dm6]	TGCA	T	1.383e^-4	0.664	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19544788	2R_19544788_SNP [dm3] 2R_23657265_SNP [dm6]	A	T	1.391e^-4	0.664	UPSTREAM Pde8 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13127656	3L_13127656_SNP [dm3] 3L_13134556_SNP [dm6]	A	G	1.392e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25377519	3R_25377519_SNP [dm3] 3R_29551797_SNP [dm6]	C	A	1.398e^-4	0.664	INTERGENIC
2R	10561832	2R_10561832_SNP [dm3] 2R_14674327_SNP [dm6]	T	C	1.399e^-4	0.664	DOWNSTREAM CG30479 & 1 other INTRON mspo
2L	3986342	2L_3986342_SNP [dm3] 2L_3986342_SNP [dm6]	C	T	1.408e^-4	0.664	INTRON fred
2R	12677224	2R_12677224_SNP [dm3] 2R_16789719_SNP [dm6]	C	T	1.409e^-4	0.664	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	553723	2L_553723_SNP [dm3] 2L_553723_SNP [dm6]	A	G	1.411e^-4	0.664	UPSTREAM Ets21C DOWNSTREAM rempA INTERGENIC
3R	26815648	3R_26815648_SNP [dm3] 3R_30989926_SNP [dm6]	C	T	1.419e^-4	0.664	UTR_5_PRIME CG31008 INTRON 5-HT7
2L	3274036	2L_3274036_SNP [dm3] 2L_3274036_SNP [dm6]	G	A	1.419e^-4	0.664	INTERGENIC
3L	973451	3L_973451_SNP [dm3] 3L_973451_SNP [dm6]	C	T	1.426e^-4	0.664	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	1.427e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_inv
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	1.427e^-4	0.664	INTERGENIC
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	1.430e^-4	0.664	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11751152	3L_11751152_SNP [dm3] 3L_11758052_SNP [dm6]	T	G	1.434e^-4	0.664	INTRON CG6024
X	7329536	X_7329536_SNP [dm3] X_7435503_SNP [dm6]	T	C	1.435e^-4	0.664	INTERGENIC
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	1.437e^-4	0.664	INTERGENIC
X	13681470	X_13681470_SNP [dm3] X_13787437_SNP [dm6]	G	T	1.442e^-4	0.664	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	7070113	2L_7070113_INS [dm3] 2L_7070113_INS [dm6]	A	AA	1.446e^-4	0.664	UTR_3_PRIME Pvf2 DOWNSTREAM CG11289
2R	15575658	2R_15575658_DEL [dm3] 2R_19688153_DEL [dm6]	AGGTTTTCCATA...	A	1.447e^-4	0.664	UPSTREAM CG15128 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	1.450e^-4	0.664	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4794097	X_4794097_DEL [dm3] X_4900064_DEL [dm6]	GGGGTAT	C	1.451e^-4	0.664	INTRON CG42594
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	1.469e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9060114	2L_9060114_SNP [dm3] 2L_9060114_SNP [dm6]	G	A	1.470e^-4	0.664	INTRON CG31708
3L	16068334	3L_16068334_SNP [dm3] 3L_16075234_SNP [dm6]	A	C	1.472e^-4	0.664	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
2R	10887572	2R_10887572_SNP [dm3] 2R_15000067_SNP [dm6]	T	C	1.473e^-4	0.664	INTERGENIC
3L	6119144	3L_6119144_SNP [dm3] 3L_6126044_SNP [dm6]	T	C	1.474e^-4	0.664	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6939938	3L_6939938_SNP [dm3] 3L_6946838_SNP [dm6]	C	A	1.475e^-4	0.664	INTRON tow
3R	10873419	3R_10873419_SNP [dm3] 3R_15047697_SNP [dm6]	A	G	1.483e^-4	0.664	INTERGENIC
3L	6346528	3L_6346528_DEL [dm3] 3L_6353428_DEL [dm6]	AAATTCTGTGGAGAAAGCGG...	A	1.488e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	15575683	2R_15575683_SNP [dm3] 2R_19688178_SNP [dm6]	G	T	1.489e^-4	0.664	UPSTREAM CG15128 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7329519	X_7329519_SNP [dm3] X_7435486_SNP [dm6]	A	G	1.494e^-4	0.664	INTERGENIC
3L	13127650	3L_13127650_SNP [dm3] 3L_13134550_SNP [dm6]	G	C	1.497e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7728697	3L_7728697_SNP [dm3] 3L_7735597_SNP [dm6]	C	T	1.498e^-4	0.664	INTRON CG32373 & 1 other
X	7331771	X_7331771_SNP [dm3] X_7437738_SNP [dm6]	C	G	1.505e^-4	0.664	INTERGENIC
3R	17024376	3R_17024376_SNP [dm3] 3R_21198654_SNP [dm6]	T	A	1.508e^-4	0.664	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6001949	2L_6001949_SNP [dm3] 2L_6001949_SNP [dm6]	A	G	1.510e^-4	0.664	UTR_3_PRIME Tsp26A
2L	2552382	2L_2552382_SNP [dm3] 2L_2552382_SNP [dm6]	A	G	1.510e^-4	0.664	INTRON CG3515
2R	9347993	2R_9347993_SNP [dm3] 2R_13460488_SNP [dm6]	C	A	1.519e^-4	0.664	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9589641	2L_9589641_SNP [dm3] 2L_9589641_SNP [dm6]	A	T	1.520e^-4	0.664	UTR_5_PRIME CG3841 INTRON CG3841	regulatory region REDfly_CRMs
3L	16272449	3L_16272449_SNP [dm3] 3L_16279349_SNP [dm6]	G	T	1.520e^-4	0.664	UPSTREAM CG13050 INTERGENIC
3R	27135746	3R_27135746_SNP [dm3] 3R_31310024_SNP [dm6]	G	C	1.521e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5243810	X_5243810_SNP [dm3] X_5349777_SNP [dm6]	T	C	1.522e^-4	0.664	INTRON SK
2R	10700592	2R_10700592_SNP [dm3] 2R_14813087_SNP [dm6]	G	A	1.524e^-4	0.664	INTERGENIC
3L	13312112	3L_13312112_SNP [dm3] 3L_13319012_SNP [dm6]	C	T	1.525e^-4	0.664	INTERGENIC
X	9527681	X_9527681_SNP [dm3] X_9633648_SNP [dm6]	C	T	1.528e^-4	0.664	INTRON l_1_G0232
2R	13949411	2R_13949411_SNP [dm3] 2R_18061906_SNP [dm6]	A	C	1.531e^-4	0.664	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	1.537e^-4	0.664	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25800573	3R_25800573_SNP [dm3] 3R_29974851_SNP [dm6]	A	G	1.538e^-4	0.664	INTERGENIC
4	926469	4_926469_SNP [dm3] 4_905843_SNP [dm6]	T	C	1.542e^-4	0.664	UTR_5_PRIME unc-13 UPSTREAM CR43361 INTRON CR43361	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10773146	X_10773146_SNP [dm3] X_10879113_SNP [dm6]	G	A	1.548e^-4	0.664	SYNONYMOUS_CODING Ork1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12891212	3L_12891212_SNP [dm3] 3L_12898112_SNP [dm6]	C	A	1.548e^-4	0.664	INTERGENIC
3R	26338528	3R_26338528_SNP [dm3] 3R_30512806_SNP [dm6]	G	A	1.549e^-4	0.664	SYNONYMOUS_CODING CG31524 UPSTREAM PH4alphaNE2	TF binding site mE1_TFBS_HSA
2R	6753775	2R_6753775_SNP [dm3] 2R_10866270_SNP [dm6]	A	T	1.557e^-4	0.664	INTRON CG30015
2R	19006989	2R_19006989_SNP [dm3] 2R_23119466_SNP [dm6]	T	A	1.559e^-4	0.664	INTERGENIC
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	1.563e^-4	0.664	DOWNSTREAM CR45322 EXON CR43416
3R	26117912	3R_26117912_SNP [dm3] 3R_30292190_SNP [dm6]	A	G	1.570e^-4	0.664	INTRON hdc
2L	14403491	2L_14403491_SNP [dm3] 2L_14403491_SNP [dm6]	T	C	1.572e^-4	0.664	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	4237891	X_4237891_SNP [dm3] X_4343858_SNP [dm6]	C	T	1.587e^-4	0.664	INTRON norpA
3R	13694341	3R_13694341_SNP [dm3] 3R_17868619_SNP [dm6]	C	G	1.592e^-4	0.664	NON_SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2R	18555550	2R_18555550_SNP [dm3] 2R_22668045_SNP [dm6]	A	C	1.595e^-4	0.664	NON_SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
3L	14194128	3L_14194128_SNP [dm3] 3L_14201028_SNP [dm6]	A	G	1.599e^-4	0.664	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13497208	X_13497208_SNP [dm3] X_13603175_SNP [dm6]	A	T	1.602e^-4	0.664	UPSTREAM up INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9644197	2L_9644197_SNP [dm3] 2L_9644197_SNP [dm6]	C	G	1.619e^-4	0.664	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5467017	2L_5467017_SNP [dm3] 2L_5467017_SNP [dm6]	C	A	1.621e^-4	0.664	UTR_3_PRIME mid DOWNSTREAM mid
3L	6939706	3L_6939706_SNP [dm3] 3L_6946606_SNP [dm6]	T	G	1.623e^-4	0.664	INTRON tow
2R	10507845	2R_10507845_SNP [dm3] 2R_14620340_SNP [dm6]	G	A	1.626e^-4	0.664	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3819100	2R_3819100_SNP [dm3] 2R_7931595_SNP [dm6]	T	G	1.627e^-4	0.664	UPSTREAM CG30381 & 1 other INTRON rnh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	23424390	3R_23424390_DEL [dm3] 3R_27598668_DEL [dm6]	CGCG	C	1.634e^-4	0.664	UTR_3_PRIME dsd
2L	19049124	2L_19049124_SNP [dm3] 2L_19049124_SNP [dm6]	A	C	1.642e^-4	0.664	UTR_5_PRIME CG10470 DOWNSTREAM Acn & 1 other	TF binding site mE1_TFBS_cad
X	9585042	X_9585042_DEL [dm3] X_9691009_DEL [dm6]	TTA	T	1.644e^-4	0.664	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9082347	2L_9082347_SNP [dm3] 2L_9082347_SNP [dm6]	C	A	1.655e^-4	0.664	INTERGENIC
3R	25402904	3R_25402904_SNP [dm3] 3R_29577182_SNP [dm6]	C	T	1.656e^-4	0.664	INTERGENIC
3L	716305	3L_716305_SNP [dm3] 3L_716305_SNP [dm6]	A	T	1.660e^-4	0.664	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	15603086	2L_15603086_SNP [dm3] 2L_15603086_SNP [dm6]	C	G	1.665e^-4	0.664	INTERGENIC
2L	1375453	2L_1375453_SNP [dm3] 2L_1375453_SNP [dm6]	A	G	1.669e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26542453	3R_26542453_SNP [dm3] 3R_30716731_SNP [dm6]	G	C	1.669e^-4	0.664	INTERGENIC
2L	3302109	2L_3302109_SNP [dm3] 2L_3302109_SNP [dm6]	A	T	1.675e^-4	0.664	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6618342	3L_6618342_SNP [dm3] 3L_6625242_SNP [dm6]	T	C	1.680e^-4	0.664	INTRON GluRIA
2L	19336830	2L_19336830_SNP [dm3] 2L_19336830_SNP [dm6]	G	T	1.682e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21034419	3R_21034419_SNP [dm3] 3R_25208697_SNP [dm6]	A	T	1.683e^-4	0.664	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14567864	3L_14567864_SNP [dm3] 3L_14574764_SNP [dm6]	G	T	1.683e^-4	0.664	INTERGENIC
3R	13694419	3R_13694419_SNP [dm3] 3R_17868697_SNP [dm6]	C	A	1.694e^-4	0.664	NON_SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2R	10193310	2R_10193310_SNP [dm3] 2R_14305805_SNP [dm6]	G	A	1.695e^-4	0.664	INTERGENIC
2L	19339933	2L_19339933_SNP [dm3] 2L_19339933_SNP [dm6]	G	C	1.695e^-4	0.664	NON_SYNONYMOUS_CODING dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5585958	3L_5585958_SNP [dm3] 3L_5592858_SNP [dm6]	G	T	1.698e^-4	0.664	NON_SYNONYMOUS_CODING CG10592 UPSTREAM spo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5812879	2L_5812879_SNP [dm3] 2L_5812879_SNP [dm6]	A	T	1.699e^-4	0.664	DOWNSTREAM CG43307 INTERGENIC
3R	23487007	3R_23487007_SNP [dm3] 3R_27661285_SNP [dm6]	C	T	1.703e^-4	0.664	INTERGENIC
3L	20144226	3L_20144226_SNP [dm3] 3L_20151126_SNP [dm6]	T	C	1.704e^-4	0.664	UTR_3_PRIME CG42674
2L	9092603	2L_9092603_INS [dm3] 2L_9092603_INS [dm6]	C	CTACCACTCTACTCTACCA...	1.707e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	12879529	3L_12879529_SNP [dm3] 3L_12886429_SNP [dm6]	A	C	1.707e^-4	0.664	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
3L	1000080	3L_1000080_SNP [dm3] 3L_1000080_SNP [dm6]	G	A	1.708e^-4	0.664	INTRON trio
3L	3632572	3L_3632572_SNP [dm3] 3L_3632572_SNP [dm6]	G	A	1.710e^-4	0.664	INTRON dar1	TF binding site BDTNP1_TFBS_dl
3L	17786076	3L_17786076_SNP [dm3] 3L_17792976_SNP [dm6]	G	A	1.711e^-4	0.664	SYNONYMOUS_CODING CG42816
X	9585649	X_9585649_SNP [dm3] X_9691616_SNP [dm6]	A	G	1.716e^-4	0.664	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	8588525	2R_8588525_SNP [dm3] 2R_12701020_SNP [dm6]	T	G	1.720e^-4	0.664	DOWNSTREAM wuc INTERGENIC
2R	10110983	2R_10110983_SNP [dm3] 2R_14223478_SNP [dm6]	T	C	1.720e^-4	0.664	INTRON CG8468
2R	9348371	2R_9348371_SNP [dm3] 2R_13460866_SNP [dm6]	A	G	1.732e^-4	0.664	INTRON arr
3R	17172383	3R_17172383_SNP [dm3] 3R_21346661_SNP [dm6]	G	A	1.736e^-4	0.664	INTRON CG16791	TF binding site mE1_TFBS_HSA
2R	12587416	2R_12587416_SNP [dm3] 2R_16699911_SNP [dm6]	T	A	1.737e^-4	0.664	INTRON CG30463
2R	13323944	2R_13323944_SNP [dm3] 2R_17436439_SNP [dm6]	G	A	1.739e^-4	0.664	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
2L	6875252	2L_6875252_SNP [dm3] 2L_6875252_SNP [dm6]	A	G	1.741e^-4	0.664	UTR_5_PRIME Nlg2 DOWNSTREAM CR44914	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	873092	2R_873092_SNP [dm3] 2R_4985587_SNP [dm6]	T	A	1.742e^-4	0.664	INTRON Ir41a	transposable element FlyBase
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	1.750e^-4	0.664	INTERGENIC
2R	11948429	2R_11948429_SNP [dm3] 2R_16060924_SNP [dm6]	T	G	1.753e^-4	0.664	DOWNSTREAM CG8405 INTERGENIC
3L	15105781	3L_15105781_SNP [dm3] 3L_15112681_SNP [dm6]	C	T	1.754e^-4	0.664	NON_SYNONYMOUS_CODING CTPsyn UPSTREAM CG13458	TF binding site mE1_TFBS_cad
3L	14190375	3L_14190375_INS [dm3] 3L_14197275_INS [dm6]	G	GATT	1.756e^-4	0.664	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4707107	X_4707107_DEL [dm3] X_4813074_DEL [dm6]	GCTGGTTTC	G	1.758e^-4	0.664	INTERGENIC
2L	6007326	2L_6007326_SNP [dm3] 2L_6007326_SNP [dm6]	C	G	1.759e^-4	0.664	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
3L	8518220	3L_8518220_SNP [dm3] 3L_8525120_SNP [dm6]	T	C	1.760e^-4	0.664	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	13532534	2R_13532534_DEL [dm3] 2R_17645029_DEL [dm6]	TTAATAACTACTCAC...	T	1.765e^-4	0.664	INTERGENIC
2L	9263664	2L_9263664_SNP [dm3] 2L_9263664_SNP [dm6]	A	C	1.765e^-4	0.664	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_inv
2L	8501736	2L_8501736_SNP [dm3] 2L_8501736_SNP [dm6]	T	G	1.766e^-4	0.664	INTRON Dh31	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13532562	2R_13532562_SNP [dm3] 2R_17645057_SNP [dm6]	G	T	1.771e^-4	0.664	INTERGENIC
X	17456642	X_17456642_SNP [dm3] X_17562609_SNP [dm6]	G	A	1.774e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13146924	3L_13146924_SNP [dm3] 3L_13153824_SNP [dm6]	T	C	1.776e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	26978964	3R_26978964_SNP [dm3] 3R_31153242_SNP [dm6]	G	A	1.777e^-4	0.664	INTRON Gycbeta100B
3L	16892081	3L_16892081_SNP [dm3] 3L_16898981_SNP [dm6]	T	C	1.779e^-4	0.664	UPSTREAM Lmpt INTRON Lmpt
X	10928174	X_10928174_SNP [dm3] X_11034141_SNP [dm6]	A	G	1.780e^-4	0.664	INTRON CG42339
3R	23779690	3R_23779690_SNP [dm3] 3R_27953968_SNP [dm6]	G	A	1.781e^-4	0.664	UPSTREAM CG5527 INTRON CG4951	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15535082	X_15535082_DEL [dm3] X_15641049_DEL [dm6]	GTAGATTCTCTTATTG...	G	1.782e^-4	0.664	DOWNSTREAM CR44893 INTERGENIC
3L	13185301	3L_13185301_SNP [dm3] 3L_13192201_SNP [dm6]	C	A	1.790e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20078818	3L_20078818_SNP [dm3] 3L_20085718_SNP [dm6]	G	T	1.799e^-4	0.664	INTRON sNPF-R
3L	6119185	3L_6119185_SNP [dm3] 3L_6126085_SNP [dm6]	C	A	1.800e^-4	0.664	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3594129	2L_3594129_SNP [dm3] 2L_3594129_SNP [dm6]	G	A	1.801e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18436141	3R_18436141_SNP [dm3] 3R_22610419_SNP [dm6]	T	C	1.802e^-4	0.664	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15604520	3R_15604520_SNP [dm3] 3R_19778798_SNP [dm6]	C	T	1.802e^-4	0.664	SYNONYMOUS_CODING CG11391
X	13497210	X_13497210_SNP [dm3] X_13603177_SNP [dm6]	A	T	1.811e^-4	0.666	UPSTREAM up INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	611972	2L_611972_SNP [dm3] 2L_611972_SNP [dm6]	C	T	1.818e^-4	0.667	INTERGENIC
3L	11751121	3L_11751121_SNP [dm3] 3L_11758021_SNP [dm6]	G	A	1.822e^-4	0.667	INTRON CG6024
4	997611	4_997611_SNP [dm3] 4_976985_SNP [dm6]	T	A	1.826e^-4	0.667	UPSTREAM fuss INTRON fuss EXON sphinx	TF binding site BDTNP1_TFBS_dl
2R	15462205	2R_15462205_SNP [dm3] 2R_19574700_SNP [dm6]	T	A	1.829e^-4	0.667	INTRON sm
2R	10676788	2R_10676788_SNP [dm3] 2R_14789283_SNP [dm6]	C	T	1.834e^-4	0.667	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	17181037	2R_17181037_SNP [dm3] 2R_21293532_SNP [dm6]	A	T	1.840e^-4	0.667	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9734384	3R_9734384_SNP [dm3] 3R_13908662_SNP [dm6]	G	A	1.844e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	15520958	X_15520958_DEL [dm3] X_15626925_DEL [dm6]	AAA	A	1.844e^-4	0.667	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_twi
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	1.846e^-4	0.667	INTRON Nox	TF binding site mE1_TFBS_chinmo
2R	10727752	2R_10727752_SNP [dm3] 2R_14840247_SNP [dm6]	G	A	1.848e^-4	0.667	INTERGENIC
2L	9085951	2L_9085951_SNP [dm3] 2L_9085951_SNP [dm6]	G	T	1.856e^-4	0.668	INTRON Toll-4
X	12812250	X_12812250_INS [dm3] X_12918217_INS [dm6]	G	GA	1.867e^-4	0.67	INTRON fne
X	2734358	X_2734358_SNP [dm3] X_2840325_SNP [dm6]	G	A	1.867e^-4	0.67	INTRON kirre
2L	742464	2L_742464_SNP [dm3] 2L_742464_SNP [dm6]	A	T	1.876e^-4	0.671	UPSTREAM Eaat2 INTRON Eaat2
2R	10789177	2R_10789177_SNP [dm3] 2R_14901672_SNP [dm6]	G	A	1.879e^-4	0.671	UTR_3_PRIME Cyp317a1 & 1 other DOWNSTREAM Cyp317a1
2R	6659626	2R_6659626_SNP [dm3] 2R_10772121_SNP [dm6]	T	A	1.884e^-4	0.671	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2588620	3L_2588620_SNP [dm3] 3L_2588620_SNP [dm6]	C	T	1.887e^-4	0.671	SYNONYMOUS_CODING RpL8 UPSTREAM dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 mE1_TFBS_sens
4	1101403	4_1101403_SNP [dm3] 4_1080777_SNP [dm6]	T	G	1.888e^-4	0.671	SYNONYMOUS_CODING Actbeta
2R	1345579	2R_1345579_SNP [dm3] 2R_5458074_SNP [dm6]	T	C	1.897e^-4	0.672	INTERGENIC	transposable element FlyBase
2R	17638671	2R_17638671_SNP [dm3] 2R_21751166_SNP [dm6]	A	G	1.908e^-4	0.674	INTERGENIC
2R	10951809	2R_10951809_SNP [dm3] 2R_15064304_SNP [dm6]	G	T	1.915e^-4	0.674	INTERGENIC
2R	10951812	2R_10951812_SNP [dm3] 2R_15064307_SNP [dm6]	T	A	1.915e^-4	0.674	INTERGENIC
2L	6015153	2L_6015153_SNP [dm3] 2L_6015153_SNP [dm6]	G	A	1.921e^-4	0.674	INTRON H2.0
3L	12852720	3L_12852720_SNP [dm3] 3L_12859620_SNP [dm6]	C	G	1.924e^-4	0.674	NON_SYNONYMOUS_CODING CG32107
2L	9089761	2L_9089761_SNP [dm3] 2L_9089761_SNP [dm6]	G	A	1.926e^-4	0.674	DOWNSTREAM Toll-4 INTERGENIC
3R	15603804	3R_15603804_SNP [dm3] 3R_19778082_SNP [dm6]	A	C	1.928e^-4	0.674	UPSTREAM CG11659 & 1 other INTERGENIC
2R	10574702	2R_10574702_SNP [dm3] 2R_14687197_SNP [dm6]	T	A	1.932e^-4	0.674	INTRON mspo
2R	11348569	2R_11348569_SNP [dm3] 2R_15461064_SNP [dm6]	C	T	1.943e^-4	0.674	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729
2R	13192472	2R_13192472_SNP [dm3] 2R_17304967_SNP [dm6]	T	C	1.944e^-4	0.674	INTRON mbl
3L	12418472	3L_12418472_SNP [dm3] 3L_12425372_SNP [dm6]	C	A	1.945e^-4	0.674	INTRON toe	TF binding site mE1_TFBS_cad
3L	14189692	3L_14189692_SNP [dm3] 3L_14196592_SNP [dm6]	A	T	1.947e^-4	0.674	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13532533	2R_13532533_SNP [dm3] 2R_17645028_SNP [dm6]	C	A	1.952e^-4	0.674	INTERGENIC
X	9190301	X_9190301_SNP [dm3] X_9296268_SNP [dm6]	C	G	1.953e^-4	0.674	INTRON lz	TF binding site mE1_TFBS_Kr
2R	17285383	2R_17285383_SNP [dm3] 2R_21397878_SNP [dm6]	C	T	1.961e^-4	0.674	INTRON Sdc
3L	17134068	3L_17134068_SNP [dm3] 3L_17140968_SNP [dm6]	C	T	1.965e^-4	0.674	INTRON Rbp6
2R	9788604	2R_9788604_SNP [dm3] 2R_13901099_SNP [dm6]	A	T	1.967e^-4	0.674	INTRON shot
3L	12794214	3L_12794214_SNP [dm3] 3L_12801114_SNP [dm6]	G	T	1.968e^-4	0.674	INTRON Atg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5812708	2L_5812708_SNP [dm3] 2L_5812708_SNP [dm6]	C	A	1.975e^-4	0.674	DOWNSTREAM CG43307 INTERGENIC
2L	10195081	2L_10195081_SNP [dm3] 2L_10195081_SNP [dm6]	G	C	1.983e^-4	0.674	INTRON Sur
X	21307131	X_21307131_SNP [dm3] X_21436104_SNP [dm6]	C	G	1.985e^-4	0.674	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12420872	3L_12420872_SNP [dm3] 3L_12427772_SNP [dm6]	G	A	1.985e^-4	0.674	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	1.987e^-4	0.674	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
3R	7720558	3R_7720558_SNP [dm3] 3R_11894836_SNP [dm6]	T	C	1.987e^-4	0.674	SYNONYMOUS_CODING Cad87A
X	9291997	X_9291997_SNP [dm3] X_9397964_SNP [dm6]	T	C	1.997e^-4	0.674	INTRON mgl
2L	2734577	2L_2734577_SNP [dm3] 2L_2734577_SNP [dm6]	C	T	1.998e^-4	0.674	INTRON CG31689
3L	16887980	3L_16887980_SNP [dm3] 3L_16894880_SNP [dm6]	C	G	2.000e^-4	0.674	INTRON Lmpt
X	13681525	X_13681525_SNP [dm3] X_13787492_SNP [dm6]	A	T	2.002e^-4	0.674	INTRON inaE	TF binding site mE1_TFBS_kn
3L	7861195	3L_7861195_SNP [dm3] 3L_7868095_SNP [dm6]	A	T	2.008e^-4	0.674	UPSTREAM Pdp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	890602	3L_890602_SNP [dm3] 3L_890602_SNP [dm6]	G	A	2.008e^-4	0.674	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad
3R	11454890	3R_11454890_DEL [dm3] 3R_15629168_DEL [dm6]	TTT	T	2.011e^-4	0.674	INTERGENIC
3L	18295554	3L_18295554_SNP [dm3] 3L_18302454_SNP [dm6]	C	A	2.023e^-4	0.674	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	11454949	3R_11454949_SNP [dm3] 3R_15629227_SNP [dm6]	G	A	2.024e^-4	0.674	INTERGENIC
3R	8436499	3R_8436499_SNP [dm3] 3R_12610777_SNP [dm6]	C	T	2.028e^-4	0.674	INTERGENIC
3R	15604319	3R_15604319_SNP [dm3] 3R_19778597_SNP [dm6]	T	A	2.028e^-4	0.674	UPSTREAM CG11391 INTERGENIC
2L	19913184	2L_19913184_SNP [dm3] 2L_19913184_SNP [dm6]	A	G	2.035e^-4	0.675	SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
3R	2597314	3R_2597314_DEL [dm3] 3R_6771592_DEL [dm6]	AA	A	2.038e^-4	0.675	INTRON CR42721
3L	16892083	3L_16892083_SNP [dm3] 3L_16898983_SNP [dm6]	T	C	2.039e^-4	0.675	UPSTREAM Lmpt INTRON Lmpt
2L	19113576	2L_19113576_SNP [dm3] 2L_19113576_SNP [dm6]	C	T	2.047e^-4	0.675	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7476182	2R_7476182_SNP [dm3] 2R_11588677_SNP [dm6]	T	A	2.050e^-4	0.675	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
3L	12420844	3L_12420844_SNP [dm3] 3L_12427744_SNP [dm6]	C	G	2.051e^-4	0.675	NON_SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16272855	3L_16272855_INS [dm3] 3L_16279755_INS [dm6]	A	ACATA	2.071e^-4	0.675	UPSTREAM CG13050 & 1 other INTERGENIC
2R	10508259	2R_10508259_SNP [dm3] 2R_14620754_SNP [dm6]	A	G	2.071e^-4	0.675	SYNONYMOUS_CODING CG12863 UPSTREAM Uhg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21034653	3R_21034653_SNP [dm3] 3R_25208931_SNP [dm6]	C	G	2.073e^-4	0.675	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18295579	3L_18295579_SNP [dm3] 3L_18302479_SNP [dm6]	T	A	2.074e^-4	0.675	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	12052975	X_12052975_SNP [dm3] X_12158942_SNP [dm6]	C	A	2.074e^-4	0.675	INTRON Ten-a
3L	17141657	3L_17141657_SNP [dm3] 3L_17148557_SNP [dm6]	C	A	2.076e^-4	0.675	UPSTREAM Rbp6 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10915356	3R_10915356_DEL [dm3] 3R_15089634_DEL [dm6]	TAT	T	2.076e^-4	0.675	INTRON CG6966	TF binding site mE1_TFBS_Trl
3L	9203861	3L_9203861_SNP [dm3] 3L_9210761_SNP [dm6]	A	G	2.084e^-4	0.675	INTERGENIC
2L	14460134	2L_14460134_SNP [dm3] 2L_14460134_SNP [dm6]	T	A	2.085e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15520967	X_15520967_SNP [dm3] X_15626934_SNP [dm6]	C	T	2.092e^-4	0.675	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_twi
X	12055574	X_12055574_SNP [dm3] X_12161541_SNP [dm6]	G	T	2.092e^-4	0.675	INTRON Ten-a
3R	20651639	3R_20651639_SNP [dm3] 3R_24825917_SNP [dm6]	T	C	2.094e^-4	0.675	UTR_3_PRIME CG43166 UPSTREAM niki DOWNSTREAM RabX4
2R	10935810	2R_10935810_SNP [dm3] 2R_15048305_SNP [dm6]	C	G	2.100e^-4	0.675	INTERGENIC
4	318340	4_318340_SNP [dm3] 4_297714_SNP [dm6]	G	T	2.103e^-4	0.675	INTRON Syt7	transposable element FlyBase
3L	981686	3L_981686_SNP [dm3] 3L_981686_SNP [dm6]	G	A	2.114e^-4	0.677	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site mE1_TFBS_chinmo
3R	26333660	3R_26333660_SNP [dm3] 3R_30507938_SNP [dm6]	C	A	2.122e^-4	0.677	NON_SYNONYMOUS_CODING CG15539 UPSTREAM CG34041
3L	9203876	3L_9203876_SNP [dm3] 3L_9210776_SNP [dm6]	C	A	2.123e^-4	0.677	INTERGENIC
3R	26338314	3R_26338314_SNP [dm3] 3R_30512592_SNP [dm6]	G	C	2.133e^-4	0.677	SYNONYMOUS_CODING CG31524 UPSTREAM PH4alphaNE2
3L	11751177	3L_11751177_SNP [dm3] 3L_11758077_SNP [dm6]	T	A	2.136e^-4	0.677	INTRON CG6024
2L	19118432	2L_19118432_SNP [dm3] 2L_19118432_SNP [dm6]	A	G	2.139e^-4	0.677	INTRON Ddc	regulatory region REDfly_CRMs
2R	15858953	2R_15858953_SNP [dm3] 2R_19971448_SNP [dm6]	A	G	2.140e^-4	0.677	INTERGENIC
3L	7382034	3L_7382034_SNP [dm3] 3L_7388934_SNP [dm6]	C	A	2.148e^-4	0.677	INTERGENIC
3L	12250456	3L_12250456_SNP [dm3] 3L_12257356_SNP [dm6]	C	G	2.149e^-4	0.677	INTRON app
2L	14456768	2L_14456768_SNP [dm3] 2L_14456768_SNP [dm6]	C	A	2.158e^-4	0.677	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3R	12209852	3R_12209852_SNP [dm3] 3R_16384130_SNP [dm6]	G	A	2.164e^-4	0.677	INTRON ss	regulatory region REDfly_CRMs
2L	7068276	2L_7068276_SNP [dm3] 2L_7068276_SNP [dm6]	C	T	2.166e^-4	0.677	SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_sens
3L	12420994	3L_12420994_SNP [dm3] 3L_12427894_SNP [dm6]	G	C	2.169e^-4	0.677	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12421028	3L_12421028_DEL [dm3] 3L_12427928_DEL [dm6]	AA	T	2.169e^-4	0.677	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2833407	2L_2833407_SNP [dm3] 2L_2833407_SNP [dm6]	A	G	2.175e^-4	0.677	INTERGENIC
2R	15385762	2R_15385762_SNP [dm3] 2R_19498257_SNP [dm6]	C	T	2.177e^-4	0.677	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18295578	3L_18295578_SNP [dm3] 3L_18302478_SNP [dm6]	A	T	2.181e^-4	0.677	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	8518238	3L_8518238_SNP [dm3] 3L_8525138_SNP [dm6]	A	G	2.182e^-4	0.677	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	9624406	2R_9624406_SNP [dm3] 2R_13736901_SNP [dm6]	G	A	2.184e^-4	0.677	INTRON fas
2L	9089893	2L_9089893_SNP [dm3] 2L_9089893_SNP [dm6]	A	G	2.189e^-4	0.677	DOWNSTREAM Toll-4 INTERGENIC
3R	26119799	3R_26119799_SNP [dm3] 3R_30294077_SNP [dm6]	A	C	2.190e^-4	0.677	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	19520289	3L_19520289_SNP [dm3] 3L_19527189_SNP [dm6]	T	C	2.194e^-4	0.677	UTR_3_PRIME Cpr76Bc
X	9584882	X_9584882_SNP [dm3] X_9690849_SNP [dm6]	C	G	2.194e^-4	0.677	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	2.201e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9089320	2L_9089320_SNP [dm3] 2L_9089320_SNP [dm6]	C	T	2.202e^-4	0.677	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25403277	3R_25403277_SNP [dm3] 3R_29577555_SNP [dm6]	G	A	2.203e^-4	0.677	INTERGENIC
2R	6949149	2R_6949149_SNP [dm3] 2R_11061644_SNP [dm6]	T	G	2.206e^-4	0.677	INTRON luna
3L	17217127	3L_17217127_SNP [dm3] 3L_17224027_SNP [dm6]	T	C	2.214e^-4	0.677	INTRON Rbp6
3R	26979628	3R_26979628_INS [dm3] 3R_31153906_INS [dm6]	G	GTATTT	2.215e^-4	0.677	INTRON Gycbeta100B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16565782	3R_16565782_SNP [dm3] 3R_20740060_SNP [dm6]	A	G	2.215e^-4	0.677	UPSTREAM CG17267 & 1 other INTERGENIC
2R	10171260	2R_10171260_SNP [dm3] 2R_14283755_SNP [dm6]	G	A	2.223e^-4	0.677	INTRON Ih
2R	9347979	2R_9347979_SNP [dm3] 2R_13460474_SNP [dm6]	C	T	2.225e^-4	0.677	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26115854	3R_26115854_DEL [dm3] 3R_30290132_DEL [dm6]	AAG	T	2.235e^-4	0.677	INTRON hdc
2L	9079671	2L_9079671_SNP [dm3] 2L_9079671_SNP [dm6]	T	A	2.240e^-4	0.677	INTERGENIC
3R	26088115	3R_26088115_INS [dm3] 3R_30262393_INS [dm6]	A	AGGCCTTCCTCA...	2.253e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	19225371	3R_19225371_SNP [dm3] 3R_23399649_SNP [dm6]	A	C	2.254e^-4	0.677	EXON CR44323	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10841093	2R_10841093_SNP [dm3] 2R_14953588_SNP [dm6]	G	T	2.255e^-4	0.677	UTR_5_PRIME aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18000829	2L_18000829_SNP [dm3] 2L_18000829_SNP [dm6]	A	G	2.256e^-4	0.677	INTERGENIC
2R	10714656	2R_10714656_SNP [dm3] 2R_14827151_SNP [dm6]	G	C	2.256e^-4	0.677	INTERGENIC
3R	21340215	3R_21340215_SNP [dm3] 3R_25514493_SNP [dm6]	T	A	2.264e^-4	0.677	INTERGENIC
3L	10658959	3L_10658959_SNP [dm3] 3L_10665859_SNP [dm6]	T	A	2.274e^-4	0.677	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9079667	2L_9079667_SNP [dm3] 2L_9079667_SNP [dm6]	C	T	2.274e^-4	0.677	INTERGENIC
3R	23780072	3R_23780072_SNP [dm3] 3R_27954350_SNP [dm6]	T	G	2.277e^-4	0.677	UPSTREAM CG5527 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	2.280e^-4	0.677	INTRON CG31690
3L	7861291	3L_7861291_SNP [dm3] 3L_7868191_SNP [dm6]	G	C	2.284e^-4	0.677	UPSTREAM Pdp1 & 1 other INTERGENIC
2R	13191417	2R_13191417_SNP [dm3] 2R_17303912_SNP [dm6]	C	T	2.285e^-4	0.677	INTRON mbl
2L	6007874	2L_6007874_SNP [dm3] 2L_6007874_SNP [dm6]	C	T	2.287e^-4	0.677	UTR_3_PRIME CG9098
2L	18539890	2L_18539890_SNP [dm3] 2L_18539890_SNP [dm6]	G	T	2.288e^-4	0.677	INTRON Pde11
2L	9086013	2L_9086013_SNP [dm3] 2L_9086013_SNP [dm6]	G	T	2.291e^-4	0.677	INTRON Toll-4
2R	10252498	2R_10252498_SNP [dm3] 2R_14364993_SNP [dm6]	C	T	2.296e^-4	0.677	SPLICE_SITE_REGION Tfb1 UPSTREAM CG34184 INTRON Tfb1	TF binding site mE1_TFBS_sens
X	13681397	X_13681397_SNP [dm3] X_13787364_SNP [dm6]	T	A	2.299e^-4	0.677	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	11217621	2R_11217621_SNP [dm3] 2R_15330116_SNP [dm6]	C	T	2.304e^-4	0.677	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13732575	3L_13732575_SNP [dm3] 3L_13739475_SNP [dm6]	T	G	2.308e^-4	0.677	INTRON bru-3
2R	11613733	2R_11613733_SNP [dm3] 2R_15726228_SNP [dm6]	G	C	2.319e^-4	0.677	INTERGENIC
3L	5508807	3L_5508807_SNP [dm3] 3L_5515707_SNP [dm6]	C	G	2.320e^-4	0.677	INTRON Lkr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10709764	2R_10709764_SNP [dm3] 2R_14822259_SNP [dm6]	C	T	2.323e^-4	0.677	INTERGENIC
3R	22542991	3R_22542991_SNP [dm3] 3R_26717269_SNP [dm6]	T	C	2.324e^-4	0.677	UTR_5_PRIME CG6425 UPSTREAM CG5484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18883185	2L_18883185_DEL [dm3] 2L_18883185_DEL [dm6]	TTAACTTGTTGGTT...	T	2.330e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5904153	X_5904153_SNP [dm3] X_6010120_SNP [dm6]	C	T	2.331e^-4	0.677	INTRON mab-21
2R	9594928	2R_9594928_DEL [dm3] 2R_13707423_DEL [dm6]	GG	G	2.342e^-4	0.677	INTRON fas	TF binding site mE1_TFBS_chinmo
3L	5242181	3L_5242181_SNP [dm3] 3L_5249081_SNP [dm6]	G	A	2.342e^-4	0.677	UPSTREAM shep INTRON shep
2R	13972970	2R_13972970_SNP [dm3] 2R_18085465_SNP [dm6]	T	A	2.348e^-4	0.677	INTRON CG34386
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	2.349e^-4	0.677	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	3986202	2L_3986202_SNP [dm3] 2L_3986202_SNP [dm6]	C	T	2.356e^-4	0.677	INTRON fred
2L	9079827	2L_9079827_SNP [dm3] 2L_9079827_SNP [dm6]	A	G	2.362e^-4	0.677	INTERGENIC
2R	10353392	2R_10353392_SNP [dm3] 2R_14465887_SNP [dm6]	A	T	2.369e^-4	0.677	DOWNSTREAM Oaz INTERGENIC
3L	11172414	3L_11172414_SNP [dm3] 3L_11179314_SNP [dm6]	C	G	2.380e^-4	0.677	SYNONYMOUS_CODING GlcAT-P
3R	23778868	3R_23778868_SNP [dm3] 3R_27953146_SNP [dm6]	C	T	2.382e^-4	0.677	SPLICE_SITE_REGION CG4951 SYNONYMOUS_CODING CG4951 DOWNSTREAM Gp93	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17943465	2L_17943465_SNP [dm3] 2L_17943465_SNP [dm6]	T	C	2.385e^-4	0.677	INTERGENIC
3R	20658900	3R_20658900_SNP [dm3] 3R_24833178_SNP [dm6]	C	T	2.386e^-4	0.677	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12406411	2R_12406411_SNP [dm3] 2R_16518906_SNP [dm6]	A	C	2.391e^-4	0.677	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18248160	3L_18248160_SNP [dm3] 3L_18255060_SNP [dm6]	C	G	2.393e^-4	0.677	INTERGENIC
4	370318	4_370318_SNP [dm3] 4_349692_SNP [dm6]	T	C	2.396e^-4	0.677	INTRON PMCA
2R	10175044	2R_10175044_SNP [dm3] 2R_14287539_SNP [dm6]	A	T	2.399e^-4	0.677	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	2.400e^-4	0.677	INTERGENIC
2L	14768487	2L_14768487_SNP [dm3] 2L_14768487_SNP [dm6]	G	C	2.401e^-4	0.677	INTERGENIC
X	13681504	X_13681504_SNP [dm3] X_13787471_SNP [dm6]	A	T	2.406e^-4	0.677	INTRON inaE	TF binding site mE1_TFBS_kn
3L	6679048	3L_6679048_SNP [dm3] 3L_6685948_SNP [dm6]	C	A	2.408e^-4	0.677	INTERGENIC
X	9413228	X_9413228_SNP [dm3] X_9519195_SNP [dm6]	T	G	2.410e^-4	0.677	INTRON CG32700
X	17458177	X_17458177_SNP [dm3] X_17564144_SNP [dm6]	C	A	2.410e^-4	0.677	INTERGENIC
3R	19586261	3R_19586261_SNP [dm3] 3R_23760539_SNP [dm6]	C	T	2.414e^-4	0.677	UTR_5_PRIME CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13063978	3R_13063978_SNP [dm3] 3R_17238256_SNP [dm6]	A	T	2.415e^-4	0.677	INTRON beat-IIb
2R	3819864	2R_3819864_SNP [dm3] 2R_7932359_SNP [dm6]	A	C	2.422e^-4	0.677	UTR_5_PRIME rnh1 UPSTREAM drosha	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14150700	2R_14150700_SNP [dm3] 2R_18263195_SNP [dm6]	A	C	2.426e^-4	0.677	INTERGENIC
3R	25373973	3R_25373973_SNP [dm3] 3R_29548251_SNP [dm6]	T	C	2.426e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	9986033	X_9986033_SNP [dm3] X_10092000_SNP [dm6]	A	T	2.431e^-4	0.677	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4282822	2L_4282822_SNP [dm3] 2L_4282822_SNP [dm6]	A	C	2.437e^-4	0.677	UPSTREAM tutl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	5605817	2L_5605817_SNP [dm3] 2L_5605817_SNP [dm6]	T	G	2.445e^-4	0.677	INTRON CG14010
2R	7166346	2R_7166346_SNP [dm3] 2R_11278841_SNP [dm6]	G	A	2.448e^-4	0.677	UPSTREAM Cpr47Eg & 1 other DOWNSTREAM CG9067 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6293919	3L_6293919_SNP [dm3] 3L_6300819_SNP [dm6]	A	T	2.458e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16426774	2R_16426774_SNP [dm3] 2R_20539269_SNP [dm6]	G	A	2.458e^-4	0.677	START_GAINED CG13427 UTR_5_PRIME CG13427 DOWNSTREAM CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8154446	X_8154446_DEL [dm3] X_8260413_DEL [dm6]	GG	G	2.459e^-4	0.677	INTRON CG1632
2L	9086541	2L_9086541_SNP [dm3] 2L_9086541_SNP [dm6]	C	T	2.476e^-4	0.677	NON_SYNONYMOUS_CODING Toll-4
2R	13589403	2R_13589403_SNP [dm3] 2R_17701898_SNP [dm6]	A	G	2.476e^-4	0.677	SPLICE_SITE_REGION Uhg1 UPSTREAM snoRNA:U31:54Eb & 4 others DOWNSTREAM snoRNA:U29:54Ed & 3 others INTRON Uhg1
X	9190297	X_9190297_SNP [dm3] X_9296264_SNP [dm6]	T	C	2.477e^-4	0.677	INTRON lz	TF binding site mE1_TFBS_Kr
2R	10676796	2R_10676796_SNP [dm3] 2R_14789291_SNP [dm6]	A	T	2.486e^-4	0.677	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	19463845	3R_19463845_SNP [dm3] 3R_23638123_SNP [dm6]	C	T	2.490e^-4	0.677	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15019076	3L_15019076_SNP [dm3] 3L_15025976_SNP [dm6]	T	A	2.491e^-4	0.677	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4367387	3R_4367387_SNP [dm3] 3R_8541665_SNP [dm6]	A	G	2.491e^-4	0.677	INTERGENIC
3R	23431071	3R_23431071_SNP [dm3] 3R_27605349_SNP [dm6]	T	G	2.496e^-4	0.677	INTRON dsd	TF binding site mE1_TFBS_cad
3R	20651652	3R_20651652_SNP [dm3] 3R_24825930_SNP [dm6]	G	T	2.496e^-4	0.677	NON_SYNONYMOUS_CODING CG43166 UPSTREAM niki DOWNSTREAM RabX4
3L	2577053	3L_2577053_DEL [dm3] 3L_2577053_DEL [dm6]	AAA	C	2.502e^-4	0.677	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10841092	2R_10841092_SNP [dm3] 2R_14953587_SNP [dm6]	C	G	2.505e^-4	0.677	UTR_5_PRIME aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23888613	3R_23888613_SNP [dm3] 3R_28062891_SNP [dm6]	T	A	2.506e^-4	0.677	INTRON CG34362
2L	21735689	2L_21735689_SNP [dm3] 2L_21735689_SNP [dm6]	A	C	2.508e^-4	0.677	INTERGENIC	transposable element FlyBase
2R	10841097	2R_10841097_SNP [dm3] 2R_14953592_SNP [dm6]	C	G	2.509e^-4	0.677	UTR_5_PRIME aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13154467	2L_13154467_SNP [dm3] 2L_13154467_SNP [dm6]	G	A	2.519e^-4	0.677	INTERGENIC
3L	7781968	3L_7781968_INS [dm3] 3L_7788868_INS [dm6]	T	TT	2.522e^-4	0.677	INTRON CG32369
X	10943443	X_10943443_SNP [dm3] X_11049410_SNP [dm6]	C	A	2.524e^-4	0.677	UTR_3_PRIME CG11160
4	743541	4_743541_SNP [dm3] 4_722915_SNP [dm6]	A	G	2.525e^-4	0.677	INTERGENIC
3L	11215253	3L_11215253_SNP [dm3] 3L_11222153_SNP [dm6]	C	G	2.528e^-4	0.677	INTRON CG42671
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	2.529e^-4	0.677	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	13323226	2R_13323226_SNP [dm3] 2R_17435721_SNP [dm6]	A	C	2.534e^-4	0.677	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
3L	11173248	3L_11173248_SNP [dm3] 3L_11180148_SNP [dm6]	C	A	2.540e^-4	0.677	INTRON GlcAT-P
3R	25311106	3R_25311106_SNP [dm3] 3R_29485384_SNP [dm6]	T	C	2.543e^-4	0.677	UTR_3_PRIME Ptp99A & 1 other DOWNSTREAM Ptp99A
2R	19543597	2R_19543597_SNP [dm3] 2R_23656074_SNP [dm6]	G	A	2.551e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10540199	2R_10540199_SNP [dm3] 2R_14652694_SNP [dm6]	T	C	2.556e^-4	0.677	INTERGENIC
X	12160854	X_12160854_SNP [dm3] X_12266821_SNP [dm6]	T	G	2.558e^-4	0.677	INTRON Ten-a	TF binding site mE1_TFBS_inv
2R	15421100	2R_15421100_SNP [dm3] 2R_19533595_SNP [dm6]	A	G	2.559e^-4	0.677	INTRON sm
3R	23780096	3R_23780096_SNP [dm3] 3R_27954374_SNP [dm6]	C	A	2.560e^-4	0.677	UPSTREAM CG5527 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9435853	2R_9435853_DEL [dm3] 2R_13548348_DEL [dm6]	TT	G	2.570e^-4	0.677	UTR_3_PRIME CG33156 UPSTREAM CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1384912	2L_1384912_SNP [dm3] 2L_1384912_SNP [dm6]	C	G	2.577e^-4	0.677	INTRON lea
2L	8888224	2L_8888224_SNP [dm3] 2L_8888224_SNP [dm6]	T	C	2.578e^-4	0.677	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	22047854	3R_22047854_SNP [dm3] 3R_26222132_SNP [dm6]	G	A	2.579e^-4	0.677	INTERGENIC
2R	14707000	2R_14707000_SNP [dm3] 2R_18819495_SNP [dm6]	A	G	2.584e^-4	0.677	UTR_5_PRIME Phb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
4	989340	4_989340_SNP [dm3] 4_968714_SNP [dm6]	G	A	2.591e^-4	0.677	INTRON fuss
3L	11331086	3L_11331086_SNP [dm3] 3L_11337986_SNP [dm6]	T	A	2.594e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9096315	2L_9096315_SNP [dm3] 2L_9096315_SNP [dm6]	A	T	2.597e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13164060	3R_13164060_SNP [dm3] 3R_17338338_SNP [dm6]	G	T	2.611e^-4	0.677	INTRON beat-IIa
2R	5089217	2R_5089217_INS [dm3] 2R_9201712_INS [dm6]	A	AA	2.612e^-4	0.677	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15602279	2L_15602279_SNP [dm3] 2L_15602279_SNP [dm6]	C	T	2.612e^-4	0.677	INTERGENIC
3L	12431239	3L_12431239_SNP [dm3] 3L_12438139_SNP [dm6]	A	G	2.614e^-4	0.677	INTERGENIC
2L	1751807	2L_1751807_SNP [dm3] 2L_1751807_SNP [dm6]	G	T	2.617e^-4	0.677	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23778853	3R_23778853_SNP [dm3] 3R_27953131_SNP [dm6]	T	C	2.623e^-4	0.677	DOWNSTREAM Gp93 INTRON CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	18924548	2L_18924548_SNP [dm3] 2L_18924548_SNP [dm6]	C	G	2.624e^-4	0.677	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1751630	2L_1751630_SNP [dm3] 2L_1751630_SNP [dm6]	A	G	2.627e^-4	0.677	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	973502	3L_973502_SNP [dm3] 3L_973502_SNP [dm6]	C	A	2.628e^-4	0.677	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7484166	2L_7484166_SNP [dm3] 2L_7484166_SNP [dm6]	A	C	2.631e^-4	0.677	INTRON Ziz	TF binding site mE1_TFBS_inv
3R	19586309	3R_19586309_SNP [dm3] 3R_23760587_SNP [dm6]	G	A	2.632e^-4	0.677	START_GAINED CG10219 UTR_5_PRIME CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14712384	2R_14712384_SNP [dm3] 2R_18824879_SNP [dm6]	T	C	2.632e^-4	0.677	INTRON CG15097	TF binding site mE1_TFBS_chinmo
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	2.635e^-4	0.677	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17457943	X_17457943_SNP [dm3] X_17563910_SNP [dm6]	G	A	2.635e^-4	0.677	INTERGENIC
3L	17785817	3L_17785817_SNP [dm3] 3L_17792717_SNP [dm6]	C	T	2.635e^-4	0.677	SYNONYMOUS_CODING CG42816
2L	5649931	2L_5649931_SNP [dm3] 2L_5649931_SNP [dm6]	A	C	2.638e^-4	0.677	INTRON CG31646
2L	9087516	2L_9087516_SNP [dm3] 2L_9087516_SNP [dm6]	A	T	2.643e^-4	0.677	NON_SYNONYMOUS_CODING Toll-4
2R	14724903	2R_14724903_SNP [dm3] 2R_18837398_SNP [dm6]	T	C	2.647e^-4	0.677	SYNONYMOUS_CODING CG15099 DOWNSTREAM CG15083
3R	13950287	3R_13950287_SNP [dm3] 3R_18124565_SNP [dm6]	G	A	2.648e^-4	0.677	INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	26063732	3R_26063732_SNP [dm3] 3R_30238010_SNP [dm6]	C	T	2.653e^-4	0.677	UPSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17457829	X_17457829_SNP [dm3] X_17563796_SNP [dm6]	C	G	2.657e^-4	0.677	INTERGENIC
3L	2620508	3L_2620508_SNP [dm3] 3L_2620508_SNP [dm6]	G	A	2.661e^-4	0.677	INTRON Pxn
2R	13073879	2R_13073879_SNP [dm3] 2R_17186374_SNP [dm6]	T	A	2.662e^-4	0.677	DOWNSTREAM CR44387 INTERGENIC
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	2.662e^-4	0.677	INTRON CG31690
2R	12380832	2R_12380832_SNP [dm3] 2R_16493327_SNP [dm6]	G	A	2.665e^-4	0.677	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21708035	3R_21708035_SNP [dm3] 3R_25882313_SNP [dm6]	G	A	2.665e^-4	0.677	UPSTREAM Tsp96F & 1 other INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	12421112	3L_12421112_SNP [dm3] 3L_12428012_SNP [dm6]	G	A	2.715e^-4	0.683	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19436443	2L_19436443_SNP [dm3] 2L_19436443_SNP [dm6]	A	C	2.716e^-4	0.683	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
2R	6753918	2R_6753918_SNP [dm3] 2R_10866413_SNP [dm6]	C	T	2.720e^-4	0.683	INTRON CG30015
3R	21042337	3R_21042337_SNP [dm3] 3R_25216615_SNP [dm6]	C	T	2.725e^-4	0.683	SYNONYMOUS_CODING CG31106
3L	12380067	3L_12380067_SNP [dm3] 3L_12386967_SNP [dm6]	G	A	2.729e^-4	0.683	INTRON Ncc69	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8731684	X_8731684_SNP [dm3] X_8837651_SNP [dm6]	T	G	2.730e^-4	0.683	UPSTREAM CG12075 DOWNSTREAM CR45537 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17357564	3R_17357564_SNP [dm3] 3R_21531842_SNP [dm6]	T	C	2.730e^-4	0.683	EXON CR43372	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17023753	3R_17023753_SNP [dm3] 3R_21198031_SNP [dm6]	G	T	2.738e^-4	0.683	INTRON SNF4Agamma
2L	6756442	2L_6756442_SNP [dm3] 2L_6756442_SNP [dm6]	A	G	2.743e^-4	0.683	DOWNSTREAM CG11221 INTERGENIC
3L	10749270	3L_10749270_SNP [dm3] 3L_10756170_SNP [dm6]	T	C	2.749e^-4	0.683	INTERGENIC
3R	18923291	3R_18923291_SNP [dm3] 3R_23097569_SNP [dm6]	C	T	2.753e^-4	0.683	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10987460	3R_10987460_SNP [dm3] 3R_15161738_SNP [dm6]	T	C	2.757e^-4	0.683	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi
X	4794079	X_4794079_SNP [dm3] X_4900046_SNP [dm6]	A	T	2.758e^-4	0.683	INTRON CG42594
3R	10074425	3R_10074425_SNP [dm3] 3R_14248703_SNP [dm6]	G	T	2.761e^-4	0.683	INTERGENIC
3L	5142503	3L_5142503_SNP [dm3] 3L_5149403_SNP [dm6]	A	C	2.763e^-4	0.683	NON_SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	7316268	2R_7316268_SNP [dm3] 2R_11428763_SNP [dm6]	T	C	2.763e^-4	0.683	UPSTREAM Drip INTRON Drip
3R	23780049	3R_23780049_SNP [dm3] 3R_27954327_SNP [dm6]	A	T	2.763e^-4	0.683	UPSTREAM CG5527 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	10529969	3R_10529969_SNP [dm3] 3R_14704247_SNP [dm6]	A	G	2.764e^-4	0.683	INTRON kibra
X	9986047	X_9986047_SNP [dm3] X_10092014_SNP [dm6]	A	T	2.765e^-4	0.683	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9204194	3L_9204194_INS [dm3] 3L_9211094_INS [dm6]	T	TGTAT	2.766e^-4	0.683	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	7984779	2L_7984779_SNP [dm3] 2L_7984779_SNP [dm6]	A	G	2.771e^-4	0.683	SYNONYMOUS_CODING CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17285289	2R_17285289_SNP [dm3] 2R_21397784_SNP [dm6]	T	G	2.777e^-4	0.683	INTRON Sdc
2L	18540425	2L_18540425_SNP [dm3] 2L_18540425_SNP [dm6]	A	T	2.779e^-4	0.683	INTRON Pde11
3R	26070068	3R_26070068_SNP [dm3] 3R_30244346_SNP [dm6]	G	T	2.784e^-4	0.683	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
X	3517055	X_3517055_SNP [dm3] X_3623022_SNP [dm6]	T	G	2.785e^-4	0.683	INTRON AstA-R1
2R	8447393	2R_8447393_SNP [dm3] 2R_12559888_SNP [dm6]	G	A	2.786e^-4	0.683	SPLICE_SITE_REGION fra INTRON fra
2L	7094941	2L_7094941_SNP [dm3] 2L_7094941_SNP [dm6]	T	C	2.787e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6000413	2L_6000413_SNP [dm3] 2L_6000413_SNP [dm6]	C	T	2.798e^-4	0.684	SYNONYMOUS_CODING Tsp26A UPSTREAM lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26484313	3R_26484313_SNP [dm3] 3R_30658591_SNP [dm6]	C	T	2.799e^-4	0.684	INTERGENIC
2R	10539294	2R_10539294_SNP [dm3] 2R_14651789_SNP [dm6]	T	C	2.803e^-4	0.684	INTERGENIC
2L	16392234	2L_16392234_DEL [dm3] 2L_16392234_DEL [dm6]	TC	T	2.808e^-4	0.684	INTERGENIC
X	16264281	X_16264281_SNP [dm3] X_16370248_SNP [dm6]	G	A	2.810e^-4	0.684	UTR_3_PRIME nonA INTRON nonA
3R	11454273	3R_11454273_SNP [dm3] 3R_15628551_SNP [dm6]	T	C	2.810e^-4	0.684	INTERGENIC
2R	19717290	2R_19717290_SNP [dm3] 2R_23829767_SNP [dm6]	T	C	2.819e^-4	0.684	INTRON CG5549
X	4793742	X_4793742_SNP [dm3] X_4899709_SNP [dm6]	A	G	2.822e^-4	0.684	INTRON CG42594
3L	7781965	3L_7781965_SNP [dm3] 3L_7788865_SNP [dm6]	T	C	2.823e^-4	0.684	INTRON CG32369
2R	10601502	2R_10601502_SNP [dm3] 2R_14713997_SNP [dm6]	T	G	2.830e^-4	0.685	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25302308	3R_25302308_SNP [dm3] 3R_29476586_SNP [dm6]	A	C	2.842e^-4	0.685	INTRON Ptp99A
2R	15423957	2R_15423957_SNP [dm3] 2R_19536452_SNP [dm6]	T	C	2.861e^-4	0.685	INTRON sm	TF binding site BDTNP1_TFBS_twi
3R	18923314	3R_18923314_SNP [dm3] 3R_23097592_SNP [dm6]	T	C	2.866e^-4	0.685	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA
2L	9074030	2L_9074030_SNP [dm3] 2L_9074030_SNP [dm6]	C	A	2.869e^-4	0.685	INTERGENIC
3L	11215279	3L_11215279_SNP [dm3] 3L_11222179_SNP [dm6]	T	C	2.879e^-4	0.685	INTRON CG42671
3L	18260139	3L_18260139_SNP [dm3] 3L_18267039_SNP [dm6]	A	G	2.879e^-4	0.685	INTERGENIC
2R	10381449	2R_10381449_SNP [dm3] 2R_14493944_SNP [dm6]	C	A	2.886e^-4	0.685	INTRON L	TF binding site mE1_TFBS_cad
X	10767747	X_10767747_SNP [dm3] X_10873714_SNP [dm6]	C	G	2.889e^-4	0.685	SPLICE_SITE_REGION CG1637 DOWNSTREAM CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6581256	2L_6581256_SNP [dm3] 2L_6581256_SNP [dm6]	G	C	2.891e^-4	0.685	INTRON CG11319
3R	10683997	3R_10683997_SNP [dm3] 3R_14858275_SNP [dm6]	T	G	2.894e^-4	0.685	INTRON btsz
2R	14498905	2R_14498905_SNP [dm3] 2R_18611400_SNP [dm6]	C	T	2.903e^-4	0.685	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2707754	3L_2707754_SNP [dm3] 3L_2707754_SNP [dm6]	T	C	2.914e^-4	0.685	INTRON Fife
2L	2541913	2L_2541913_SNP [dm3] 2L_2541913_SNP [dm6]	G	C	2.916e^-4	0.685	INTERGENIC
2R	8382796	2R_8382796_SNP [dm3] 2R_12495291_SNP [dm6]	C	G	2.917e^-4	0.685	UPSTREAM s-cup INTRON fdl	TF binding site mE1_TFBS_cad
3L	13958936	3L_13958936_SNP [dm3] 3L_13965836_SNP [dm6]	C	T	2.919e^-4	0.685	UTR_5_PRIME Nxf3 INTRON ssp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9644191	2L_9644191_SNP [dm3] 2L_9644191_SNP [dm6]	A	G	2.926e^-4	0.685	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4518427	2L_4518427_SNP [dm3] 2L_4518427_SNP [dm6]	A	G	2.928e^-4	0.685	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	2.929e^-4	0.685	INTRON Ggamma30A
3R	25319722	3R_25319722_SNP [dm3] 3R_29494000_SNP [dm6]	A	T	2.939e^-4	0.685	NON_SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19140262	X_19140262_SNP [dm3] X_19246229_SNP [dm6]	G	A	2.939e^-4	0.685	SYNONYMOUS_CODING CG7992	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8572408	2L_8572408_SNP [dm3] 2L_8572408_SNP [dm6]	T	G	2.947e^-4	0.685	INTRON Sema-1a
2R	10254237	2R_10254237_SNP [dm3] 2R_14366732_SNP [dm6]	G	T	2.948e^-4	0.685	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
2R	17181180	2R_17181180_SNP [dm3] 2R_21293675_SNP [dm6]	G	A	2.951e^-4	0.685	UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19108718	2L_19108718_SNP [dm3] 2L_19108718_SNP [dm6]	C	A	2.951e^-4	0.685	UPSTREAM CR44905 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11751139	3L_11751139_SNP [dm3] 3L_11758039_SNP [dm6]	T	G	2.952e^-4	0.685	INTRON CG6024
2L	5712078	2L_5712078_SNP [dm3] 2L_5712078_SNP [dm6]	G	A	2.952e^-4	0.685	SYNONYMOUS_CODING CG7236 INTRON CG7236
3R	18923287	3R_18923287_SNP [dm3] 3R_23097565_SNP [dm6]	G	T	2.960e^-4	0.685	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12310699	2R_12310699_SNP [dm3] 2R_16423194_SNP [dm6]	C	A	2.963e^-4	0.685	INTRON Sema-2b
3L	7861543	3L_7861543_SNP [dm3] 3L_7868443_SNP [dm6]	T	A	2.970e^-4	0.685	UPSTREAM CG32365 INTERGENIC
2R	17839165	2R_17839165_SNP [dm3] 2R_21951660_SNP [dm6]	G	T	2.972e^-4	0.685	NON_SYNONYMOUS_CODING CG13488 SPLICE_SITE_REGION CG13488 UPSTREAM CG13488
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	2.973e^-4	0.685	SYNONYMOUS_CODING SP1173
2L	6953049	2L_6953049_SNP [dm3] 2L_6953049_SNP [dm6]	T	C	2.974e^-4	0.685	SYNONYMOUS_CODING SA
2L	8026049	2L_8026049_SNP [dm3] 2L_8026049_SNP [dm6]	C	T	2.976e^-4	0.685	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
3R	13694397	3R_13694397_SNP [dm3] 3R_17868675_SNP [dm6]	T	G	2.981e^-4	0.685	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	10915364	3R_10915364_SNP [dm3] 3R_15089642_SNP [dm6]	T	C	2.982e^-4	0.685	INTRON CG6966	TF binding site mE1_TFBS_Trl
3R	9151411	3R_9151411_SNP [dm3] 3R_13325689_SNP [dm6]	A	T	2.989e^-4	0.685	INTERGENIC
3L	8969596	3L_8969596_SNP [dm3] 3L_8976496_SNP [dm6]	A	G	2.991e^-4	0.685	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5451485	2L_5451485_SNP [dm3] 2L_5451485_SNP [dm6]	T	A	2.994e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6083283	2R_6083283_SNP [dm3] 2R_10195778_SNP [dm6]	C	A	2.994e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16962546	2R_16962546_SNP [dm3] 2R_21075041_SNP [dm6]	A	C	2.997e^-4	0.685	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
3R	21034366	3R_21034366_SNP [dm3] 3R_25208644_SNP [dm6]	A	G	3.001e^-4	0.685	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8363493	2L_8363493_SNP [dm3] 2L_8363493_SNP [dm6]	C	A	3.002e^-4	0.685	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
4	1065020	4_1065020_SNP [dm3] 4_1044394_SNP [dm6]	T	A	3.007e^-4	0.685	INTRON CaMKII
3R	20658899	3R_20658899_SNP [dm3] 3R_24833177_SNP [dm6]	C	T	3.009e^-4	0.685	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	819749	3L_819749_SNP [dm3] 3L_819749_SNP [dm6]	A	T	3.013e^-4	0.685	INTERGENIC
3L	16274207	3L_16274207_SNP [dm3] 3L_16281107_SNP [dm6]	C	T	3.018e^-4	0.685	DOWNSTREAM CG13049 & 1 other INTERGENIC
X	13681248	X_13681248_SNP [dm3] X_13787215_SNP [dm6]	A	G	3.019e^-4	0.685	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	3.022e^-4	0.685	INTRON CG8547
2L	6001940	2L_6001940_SNP [dm3] 2L_6001940_SNP [dm6]	T	A	3.025e^-4	0.685	UTR_3_PRIME Tsp26A
X	9586383	X_9586383_SNP [dm3] X_9692350_SNP [dm6]	G	A	3.028e^-4	0.685	INTRON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15861818	2R_15861818_SNP [dm3] 2R_19974313_SNP [dm6]	T	G	3.033e^-4	0.685	INTERGENIC
2R	8416020	2R_8416020_SNP [dm3] 2R_12528515_SNP [dm6]	G	A	3.034e^-4	0.685	UPSTREAM fra INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	8750853	X_8750853_SNP [dm3] X_8856820_SNP [dm6]	T	A	3.038e^-4	0.685	INTRON CG12075
2L	14458102	2L_14458102_SNP [dm3] 2L_14458102_SNP [dm6]	C	T	3.052e^-4	0.685	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	3.056e^-4	0.685	INTRON Cad87A
3R	19780554	3R_19780554_SNP [dm3] 3R_23954832_SNP [dm6]	C	T	3.063e^-4	0.685	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2R	11903388	2R_11903388_SNP [dm3] 2R_16015883_SNP [dm6]	A	G	3.074e^-4	0.685	SYNONYMOUS_CODING Rrp42 DOWNSTREAM CG8397	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	19090733	2L_19090733_SNP [dm3] 2L_19090733_SNP [dm6]	G	A	3.074e^-4	0.685	INTRON Lim3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5337454	2R_5337454_SNP [dm3] 2R_9449949_SNP [dm6]	C	A	3.074e^-4	0.685	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6277839	2L_6277839_SNP [dm3] 2L_6277839_SNP [dm6]	G	A	3.075e^-4	0.685	INTRON Ddr
2R	17376433	2R_17376433_SNP [dm3] 2R_21488928_SNP [dm6]	T	A	3.077e^-4	0.685	INTRON Fkbp14
2L	3081699	2L_3081699_SNP [dm3] 2L_3081699_SNP [dm6]	C	A	3.077e^-4	0.685	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20651643	3R_20651643_SNP [dm3] 3R_24825921_SNP [dm6]	A	C	3.080e^-4	0.685	STOP_LOST CG43166 UPSTREAM niki DOWNSTREAM RabX4
X	13699214	X_13699214_SNP [dm3] X_13805181_SNP [dm6]	C	A	3.092e^-4	0.685	INTRON inaE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13146508	3L_13146508_SNP [dm3] 3L_13153408_SNP [dm6]	G	T	3.098e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	11217625	2R_11217625_SNP [dm3] 2R_15330120_SNP [dm6]	A	T	3.107e^-4	0.685	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15815127	2R_15815127_SNP [dm3] 2R_19927622_SNP [dm6]	T	A	3.110e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15815189	2R_15815189_SNP [dm3] 2R_19927684_SNP [dm6]	T	G	3.111e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15812400	2R_15812400_SNP [dm3] 2R_19924895_SNP [dm6]	A	C	3.118e^-4	0.685	DOWNSTREAM CR44626 INTERGENIC
3R	25403380	3R_25403380_SNP [dm3] 3R_29577658_SNP [dm6]	T	A	3.119e^-4	0.685	INTERGENIC
X	14471042	X_14471042_SNP [dm3] X_14577009_SNP [dm6]	A	T	3.122e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9085843	2L_9085843_SNP [dm3] 2L_9085843_SNP [dm6]	A	G	3.125e^-4	0.685	INTRON Toll-4
2L	2086820	2L_2086820_SNP [dm3] 2L_2086820_SNP [dm6]	T	G	3.126e^-4	0.685	INTRON dpr3
2L	18540430	2L_18540430_SNP [dm3] 2L_18540430_SNP [dm6]	C	T	3.132e^-4	0.685	INTRON Pde11
X	3790104	X_3790104_SNP [dm3] X_3896071_SNP [dm6]	T	A	3.132e^-4	0.685	SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16272496	3L_16272496_SNP [dm3] 3L_16279396_SNP [dm6]	A	T	3.140e^-4	0.685	UPSTREAM CG13050 INTERGENIC
3R	4364658	3R_4364658_SNP [dm3] 3R_8538936_SNP [dm6]	T	A	3.140e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16804753	3R_16804753_SNP [dm3] 3R_20979031_SNP [dm6]	T	C	3.145e^-4	0.685	START_GAINED Calx UTR_5_PRIME Calx INTRON Calx
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	3.150e^-4	0.685	INTRON Ih
2R	10700192	2R_10700192_SNP [dm3] 2R_14812687_SNP [dm6]	G	C	3.150e^-4	0.685	INTERGENIC	regulatory region REDfly_CRMs
3R	26111233	3R_26111233_SNP [dm3] 3R_30285511_SNP [dm6]	C	A	3.152e^-4	0.685	INTRON hdc
3R	20651663	3R_20651663_SNP [dm3] 3R_24825941_SNP [dm6]	C	A	3.153e^-4	0.685	NON_SYNONYMOUS_CODING CG43166 UPSTREAM niki DOWNSTREAM RabX4
2L	2244435	2L_2244435_SNP [dm3] 2L_2244435_SNP [dm6]	T	C	3.153e^-4	0.685	UTR_3_PRIME CG4267 UPSTREAM CR42859 DOWNSTREAM CG4267
2R	10747871	2R_10747871_SNP [dm3] 2R_14860366_SNP [dm6]	T	C	3.162e^-4	0.685	NON_SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3773677	2L_3773677_SNP [dm3] 2L_3773677_SNP [dm6]	C	G	3.164e^-4	0.685	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18264245	3L_18264245_SNP [dm3] 3L_18271145_SNP [dm6]	G	T	3.167e^-4	0.685	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	9289716	2L_9289716_SNP [dm3] 2L_9289716_SNP [dm6]	G	T	3.172e^-4	0.685	INTRON Ggamma30A
2R	13972979	2R_13972979_SNP [dm3] 2R_18085474_SNP [dm6]	C	T	3.173e^-4	0.685	INTRON CG34386
3L	10664025	3L_10664025_SNP [dm3] 3L_10670925_SNP [dm6]	C	T	3.173e^-4	0.685	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	12443140	3L_12443140_INS [dm3] 3L_12450040_INS [dm6]	A	AT	3.186e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2633882	3L_2633882_SNP [dm3] 3L_2633882_SNP [dm6]	T	A	3.190e^-4	0.685	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9085844	2L_9085844_SNP [dm3] 2L_9085844_SNP [dm6]	C	T	3.198e^-4	0.685	INTRON Toll-4
X	12991245	X_12991245_SNP [dm3] X_13097212_SNP [dm6]	C	T	3.211e^-4	0.685	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	3.211e^-4	0.685	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	3.214e^-4	0.685	INTERGENIC
2R	9419016	2R_9419016_SNP [dm3] 2R_13531511_SNP [dm6]	G	T	3.217e^-4	0.685	UTR_5_PRIME Vmat
3L	13851984	3L_13851984_SNP [dm3] 3L_13858884_SNP [dm6]	G	A	3.217e^-4	0.685	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13406081	X_13406081_SNP [dm3] X_13512048_SNP [dm6]	A	G	3.221e^-4	0.685	INTRON Neto	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10726792	2R_10726792_SNP [dm3] 2R_14839287_SNP [dm6]	C	T	3.224e^-4	0.685	INTERGENIC
3L	18274507	3L_18274507_SNP [dm3] 3L_18281407_SNP [dm6]	C	A	3.236e^-4	0.685	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	12512501	2R_12512501_SNP [dm3] 2R_16624996_SNP [dm6]	T	A	3.239e^-4	0.685	DOWNSTREAM Alk & 1 other INTERGENIC
3R	21340174	3R_21340174_SNP [dm3] 3R_25514452_SNP [dm6]	G	A	3.247e^-4	0.685	INTERGENIC
2L	13988715	2L_13988715_SNP [dm3] 2L_13988715_SNP [dm6]	G	A	3.257e^-4	0.685	INTRON rk
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	3.257e^-4	0.685	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	10267307	2R_10267307_SNP [dm3] 2R_14379802_SNP [dm6]	G	T	3.260e^-4	0.685	INTRON Dh44-R1
2R	15573761	2R_15573761_SNP [dm3] 2R_19686256_SNP [dm6]	A	G	3.261e^-4	0.685	INTRON CG15128	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11047754	2R_11047754_SNP [dm3] 2R_15160249_SNP [dm6]	T	G	3.263e^-4	0.685	UPSTREAM CR43831 INTRON igl
X	9800486	X_9800486_SNP [dm3] X_9906453_SNP [dm6]	G	A	3.264e^-4	0.685	INTERGENIC
2R	4482322	2R_4482322_SNP [dm3] 2R_8594817_SNP [dm6]	G	A	3.268e^-4	0.685	INTRON CG8736	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4444273	2L_4444273_SNP [dm3] 2L_4444273_SNP [dm6]	A	G	3.276e^-4	0.685	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	9619832	X_9619832_SNP [dm3] X_9725799_SNP [dm6]	A	T	3.278e^-4	0.685	INTERGENIC
3L	12422482	3L_12422482_SNP [dm3] 3L_12429382_SNP [dm6]	C	T	3.281e^-4	0.685	INTRON toe
3R	10047640	3R_10047640_INS [dm3] 3R_14221918_INS [dm6]	A	AAA	3.283e^-4	0.685	UPSTREAM CG33109 DOWNSTREAM Sp212 INTERGENIC
3L	9902603	3L_9902603_SNP [dm3] 3L_9909503_SNP [dm6]	C	T	3.287e^-4	0.685	INTRON CG34356
2R	5296483	2R_5296483_SNP [dm3] 2R_9408978_SNP [dm6]	G	A	3.287e^-4	0.685	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10683959	3R_10683959_SNP [dm3] 3R_14858237_SNP [dm6]	T	C	3.288e^-4	0.685	INTRON btsz
3L	18279151	3L_18279151_SNP [dm3] 3L_18286051_SNP [dm6]	A	T	3.288e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	14416456	2R_14416456_SNP [dm3] 2R_18528951_SNP [dm6]	A	C	3.294e^-4	0.685	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6871142	2R_6871142_INS [dm3] 2R_10983637_INS [dm6]	A	AATATAATAT	3.296e^-4	0.685	INTRON luna
3L	3576742	3L_3576742_SNP [dm3] 3L_3576742_SNP [dm6]	C	T	3.299e^-4	0.685	INTRON Eip63E
2L	16053211	2L_16053211_SNP [dm3] 2L_16053211_SNP [dm6]	G	T	3.300e^-4	0.685	INTRON beat-Ia
3L	3024646	3L_3024646_SNP [dm3] 3L_3024646_SNP [dm6]	G	C	3.301e^-4	0.685	SYNONYMOUS_CODING aly
4	436870	4_436870_SNP [dm3] 4_416244_SNP [dm6]	G	T	3.301e^-4	0.685	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	14125143	3R_14125143_SNP [dm3] 3R_18299421_SNP [dm6]	G	C	3.301e^-4	0.685	UTR_5_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12419454	3L_12419454_INS [dm3] 3L_12426354_INS [dm6]	C	CAAGTCACC	3.302e^-4	0.685	INTRON toe
2R	7841421	2R_7841421_SNP [dm3] 2R_11953916_SNP [dm6]	G	T	3.303e^-4	0.685	INTRON CG13188
2R	10508075	2R_10508075_SNP [dm3] 2R_14620570_SNP [dm6]	A	T	3.305e^-4	0.685	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14224642	3R_14224642_SNP [dm3] 3R_18398920_SNP [dm6]	G	A	3.306e^-4	0.685	UPSTREAM CG44009 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19907508	2L_19907508_SNP [dm3] 2L_19907508_SNP [dm6]	A	C	3.311e^-4	0.685	INTRON sick
2R	19717363	2R_19717363_SNP [dm3] 2R_23829840_SNP [dm6]	G	T	3.313e^-4	0.685	INTRON CG5549
3R	20651620	3R_20651620_SNP [dm3] 3R_24825898_SNP [dm6]	A	T	3.313e^-4	0.685	UTR_3_PRIME CG43166 UPSTREAM niki DOWNSTREAM RabX4
2R	2142304	2R_2142304_SNP [dm3] 2R_6254799_SNP [dm6]	A	G	3.317e^-4	0.685	INTRON Pld	transposable element FlyBase
2R	15858956	2R_15858956_SNP [dm3] 2R_19971451_SNP [dm6]	T	C	3.317e^-4	0.685	INTERGENIC
2L	3986206	2L_3986206_SNP [dm3] 2L_3986206_SNP [dm6]	A	G	3.322e^-4	0.685	INTRON fred
3R	3455476	3R_3455476_SNP [dm3] 3R_7629754_SNP [dm6]	C	T	3.331e^-4	0.687	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6755221	2R_6755221_SNP [dm3] 2R_10867716_SNP [dm6]	A	T	3.334e^-4	0.687	INTRON CG30015
3R	20651638	3R_20651638_SNP [dm3] 3R_24825916_SNP [dm6]	G	C	3.350e^-4	0.687	UTR_3_PRIME CG43166 UPSTREAM niki DOWNSTREAM RabX4
2L	2553467	2L_2553467_SNP [dm3] 2L_2553467_SNP [dm6]	A	G	3.352e^-4	0.687	UPSTREAM CG3515 INTERGENIC
3L	12380073	3L_12380073_SNP [dm3] 3L_12386973_SNP [dm6]	G	C	3.356e^-4	0.687	INTRON Ncc69	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	13748287	2R_13748287_SNP [dm3] 2R_17860782_SNP [dm6]	G	A	3.357e^-4	0.687	UTR_5_PRIME CG14490 DOWNSTREAM thr & 1 other
3L	19356580	3L_19356580_SNP [dm3] 3L_19363480_SNP [dm6]	C	G	3.361e^-4	0.687	INTRON CG32206
2R	13323593	2R_13323593_SNP [dm3] 2R_17436088_SNP [dm6]	G	A	3.364e^-4	0.687	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15385942	2R_15385942_SNP [dm3] 2R_19498437_SNP [dm6]	G	T	3.364e^-4	0.687	INTRON CG15120	TF binding site mE1_TFBS_cad
2R	10353393	2R_10353393_SNP [dm3] 2R_14465888_SNP [dm6]	A	T	3.368e^-4	0.687	DOWNSTREAM Oaz INTERGENIC
3L	3294233	3L_3294233_SNP [dm3] 3L_3294233_SNP [dm6]	G	C	3.377e^-4	0.688	UPSTREAM CG12009 INTRON CG12009
2L	6012560	2L_6012560_SNP [dm3] 2L_6012560_SNP [dm6]	A	T	3.387e^-4	0.689	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
X	15535114	X_15535114_SNP [dm3] X_15641081_SNP [dm6]	T	A	3.408e^-4	0.689	DOWNSTREAM CR44893 INTERGENIC
3L	14190377	3L_14190377_SNP [dm3] 3L_14197277_SNP [dm6]	A	T	3.414e^-4	0.689	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17181392	2R_17181392_SNP [dm3] 2R_21293887_SNP [dm6]	T	A	3.419e^-4	0.689	UPSTREAM Sgf29 DOWNSTREAM CG9752 INTRON RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	995434	2L_995434_SNP [dm3] 2L_995434_SNP [dm6]	A	G	3.426e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995436	2L_995436_SNP [dm3] 2L_995436_SNP [dm6]	C	T	3.426e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	3.428e^-4	0.689	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14194998	3L_14194998_SNP [dm3] 3L_14201898_SNP [dm6]	C	G	3.428e^-4	0.689	INTRON nuf	TF binding site mE1_TFBS_cad
3L	12442526	3L_12442526_SNP [dm3] 3L_12449426_SNP [dm6]	C	A	3.435e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13323602	2R_13323602_SNP [dm3] 2R_17436097_SNP [dm6]	C	A	3.436e^-4	0.689	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2541886	2L_2541886_SNP [dm3] 2L_2541886_SNP [dm6]	G	A	3.436e^-4	0.689	INTERGENIC
3L	4732313	3L_4732313_INS [dm3] 3L_4732313_INS [dm6]	T	TGGGTGG	3.443e^-4	0.689	INTRON RhoGEF64C
2L	1751801	2L_1751801_SNP [dm3] 2L_1751801_SNP [dm6]	C	G	3.445e^-4	0.689	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7721792	3R_7721792_SNP [dm3] 3R_11896070_SNP [dm6]	C	A	3.446e^-4	0.689	SYNONYMOUS_CODING Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2144837	2R_2144837_SNP [dm3] 2R_6257332_SNP [dm6]	A	C	3.451e^-4	0.689	INTERGENIC	transposable element FlyBase
2R	11047540	2R_11047540_SNP [dm3] 2R_15160035_SNP [dm6]	G	A	3.453e^-4	0.689	UPSTREAM CR43831 INTRON igl
3R	13694334	3R_13694334_SNP [dm3] 3R_17868612_SNP [dm6]	A	G	3.464e^-4	0.689	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3L	9255568	3L_9255568_SNP [dm3] 3L_9262468_SNP [dm6]	C	A	3.468e^-4	0.689	INTRON GluRIB
2L	7750036	2L_7750036_SNP [dm3] 2L_7750036_SNP [dm6]	T	C	3.474e^-4	0.689	INTERGENIC
3L	19923616	3L_19923616_SNP [dm3] 3L_19930516_SNP [dm6]	A	T	3.475e^-4	0.689	INTRON RhoGDI	TF binding site mE1_TFBS_Trl
3L	5029198	3L_5029198_SNP [dm3] 3L_5029198_SNP [dm6]	G	T	3.478e^-4	0.689	INTRON Con
3L	9756918	3L_9756918_SNP [dm3] 3L_9763818_SNP [dm6]	A	T	3.484e^-4	0.689	UTR_5_PRIME CG8177 INTRON CG8177	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4435609	3L_4435609_SNP [dm3] 3L_4435609_SNP [dm6]	C	T	3.487e^-4	0.689	UTR_3_PRIME nAChRbeta1
2L	8359738	2L_8359738_SNP [dm3] 2L_8359738_SNP [dm6]	C	T	3.490e^-4	0.689	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19313513	2L_19313513_SNP [dm3] 2L_19313513_SNP [dm6]	G	T	3.492e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13323601	2R_13323601_SNP [dm3] 2R_17436096_SNP [dm6]	A	G	3.497e^-4	0.689	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11751061	3L_11751061_SNP [dm3] 3L_11757961_SNP [dm6]	G	T	3.500e^-4	0.689	INTRON CG6024
3R	10683895	3R_10683895_SNP [dm3] 3R_14858173_SNP [dm6]	A	G	3.500e^-4	0.689	INTRON btsz
3R	20651654	3R_20651654_SNP [dm3] 3R_24825932_SNP [dm6]	C	T	3.505e^-4	0.689	NON_SYNONYMOUS_CODING CG43166 UPSTREAM niki DOWNSTREAM RabX4
2R	11047790	2R_11047790_SNP [dm3] 2R_15160285_SNP [dm6]	T	G	3.506e^-4	0.689	UPSTREAM CR43831 INTRON igl
2R	13323686	2R_13323686_SNP [dm3] 2R_17436181_SNP [dm6]	G	C	3.508e^-4	0.689	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
2L	8385515	2L_8385515_SNP [dm3] 2L_8385515_SNP [dm6]	A	T	3.508e^-4	0.689	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8672116	2R_8672116_SNP [dm3] 2R_12784611_SNP [dm6]	C	T	3.513e^-4	0.689	SYNONYMOUS_CODING sca EXON CR45137
3L	12909008	3L_12909008_SNP [dm3] 3L_12915908_SNP [dm6]	G	A	3.514e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
X	11842856	X_11842856_SNP [dm3] X_11948823_SNP [dm6]	G	A	3.514e^-4	0.689	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18260038	3L_18260038_DEL [dm3] 3L_18266938_DEL [dm6]	GCCAC	G	3.515e^-4	0.689	INTERGENIC
2R	10301961	2R_10301961_SNP [dm3] 2R_14414456_SNP [dm6]	C	T	3.524e^-4	0.689	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11100090	2R_11100090_SNP [dm3] 2R_15212585_SNP [dm6]	C	T	3.525e^-4	0.689	INTRON row
3R	25940918	3R_25940918_INS [dm3] 3R_30115196_INS [dm6]	A	ACTAGCAAA	3.531e^-4	0.689	INTRON sima
3R	21707349	3R_21707349_SNP [dm3] 3R_25881627_SNP [dm6]	G	T	3.536e^-4	0.689	UPSTREAM SppL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13555842	3L_13555842_SNP [dm3] 3L_13562742_SNP [dm6]	T	A	3.542e^-4	0.689	INTRON bru-3
2L	8369155	2L_8369155_SNP [dm3] 2L_8369155_SNP [dm6]	G	T	3.545e^-4	0.689	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	9074625	2L_9074625_SNP [dm3] 2L_9074625_SNP [dm6]	G	A	3.546e^-4	0.689	INTERGENIC
2L	3398397	2L_3398397_SNP [dm3] 2L_3398397_SNP [dm6]	T	A	3.547e^-4	0.689	UTR_3_PRIME CG34175 UPSTREAM CR44792
2L	21150944	2L_21150944_SNP [dm3] 2L_21150944_SNP [dm6]	T	C	3.555e^-4	0.689	INTERGENIC	transposable element FlyBase
3R	10915365	3R_10915365_SNP [dm3] 3R_15089643_SNP [dm6]	G	A	3.555e^-4	0.689	INTRON CG6966	TF binding site mE1_TFBS_Trl
X	18817759	X_18817759_SNP [dm3] X_18923726_SNP [dm6]	T	A	3.558e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_dl
4	336731	4_336731_SNP [dm3] 4_316105_SNP [dm6]	C	A	3.560e^-4	0.689	INTRON CG32850	TF binding site BDTNP1_TFBS_twi
2R	19730957	2R_19730957_SNP [dm3] 2R_23843434_SNP [dm6]	G	T	3.561e^-4	0.689	UPSTREAM shu DOWNSTREAM Snap29 INTERGENIC	TF binding site mE1_TFBS_cad
4	513835	4_513835_DEL [dm3] 4_493209_DEL [dm6]	TGTGTACATACATAT...	T	3.568e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	9090020	2L_9090020_SNP [dm3] 2L_9090020_SNP [dm6]	C	T	3.576e^-4	0.689	DOWNSTREAM Toll-4 INTERGENIC
X	9190286	X_9190286_SNP [dm3] X_9296253_SNP [dm6]	A	G	3.577e^-4	0.689	INTRON lz	TF binding site mE1_TFBS_Kr
3L	974226	3L_974226_SNP [dm3] 3L_974226_SNP [dm6]	G	A	3.577e^-4	0.689	SYNONYMOUS_CODING Glut1 INTRON Glut1
2R	13323664	2R_13323664_SNP [dm3] 2R_17436159_SNP [dm6]	G	C	3.578e^-4	0.689	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
2L	4979134	2L_4979134_SNP [dm3] 2L_4979134_SNP [dm6]	C	T	3.580e^-4	0.689	DOWNSTREAM CG8892 & 1 other INTRON CG8891
2R	10692512	2R_10692512_SNP [dm3] 2R_14805007_SNP [dm6]	G	A	3.588e^-4	0.689	INTRON kn	regulatory region REDfly_CRMs
3L	14204587	3L_14204587_DEL [dm3] 3L_14211487_DEL [dm6]	GTATCCCTACTGAATATTTA...	G	3.598e^-4	0.69	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	9851258	X_9851258_SNP [dm3] X_9957225_SNP [dm6]	C	T	3.602e^-4	0.69	INTERGENIC
3R	26103373	3R_26103373_SNP [dm3] 3R_30277651_SNP [dm6]	A	T	3.604e^-4	0.69	UPSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	1134061	3L_1134061_SNP [dm3] 3L_1134061_SNP [dm6]	T	G	3.614e^-4	0.691	INTERGENIC	regulatory region REDfly_CRMs
2L	5500989	2L_5500989_SNP [dm3] 2L_5500989_SNP [dm6]	T	A	3.614e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6753913	2R_6753913_SNP [dm3] 2R_10866408_SNP [dm6]	C	A	3.619e^-4	0.691	INTRON CG30015
2R	6753881	2R_6753881_SNP [dm3] 2R_10866376_SNP [dm6]	G	T	3.623e^-4	0.691	INTRON CG30015
3R	17357397	3R_17357397_SNP [dm3] 3R_21531675_SNP [dm6]	C	T	3.627e^-4	0.691	EXON CR43372	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19007241	2R_19007241_SNP [dm3] 2R_23119718_SNP [dm6]	C	T	3.628e^-4	0.691	INTERGENIC
4	195457	4_195457_DEL [dm3] 4_174831_DEL [dm6]	GGTA	G	3.644e^-4	0.692	UPSTREAM CR45198
3L	16067595	3L_16067595_SNP [dm3] 3L_16074495_SNP [dm6]	C	T	3.645e^-4	0.692	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
2L	6055890	2L_6055890_SNP [dm3] 2L_6055890_SNP [dm6]	G	A	3.645e^-4	0.692	INTRON CG13995
X	21272897	X_21272897_SNP [dm3] X_21401870_SNP [dm6]	A	G	3.655e^-4	0.693	DOWNSTREAM CG1678 INTERGENIC
3R	25403289	3R_25403289_SNP [dm3] 3R_29577567_SNP [dm6]	T	C	3.657e^-4	0.693	INTERGENIC
3L	2342954	3L_2342954_SNP [dm3] 3L_2342954_SNP [dm6]	C	G	3.665e^-4	0.693	SYNONYMOUS_CODING MsR1
3R	23778856	3R_23778856_SNP [dm3] 3R_27953134_SNP [dm6]	C	T	3.665e^-4	0.693	DOWNSTREAM Gp93 INTRON CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16892060	3L_16892060_SNP [dm3] 3L_16898960_SNP [dm6]	G	C	3.671e^-4	0.693	UPSTREAM Lmpt INTRON Lmpt
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	3.673e^-4	0.693	INTRON mspo
2R	9731124	2R_9731124_SNP [dm3] 2R_13843619_SNP [dm6]	G	A	3.677e^-4	0.693	SYNONYMOUS_CODING Syngr
3L	16272356	3L_16272356_SNP [dm3] 3L_16279256_SNP [dm6]	T	A	3.686e^-4	0.693	UTR_5_PRIME CG13050
2L	6004062	2L_6004062_SNP [dm3] 2L_6004062_SNP [dm6]	T	G	3.687e^-4	0.693	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13192027	2R_13192027_SNP [dm3] 2R_17304522_SNP [dm6]	C	T	3.690e^-4	0.693	INTRON mbl
3L	6836031	3L_6836031_SNP [dm3] 3L_6842931_SNP [dm6]	C	T	3.700e^-4	0.693	INTERGENIC
X	13681481	X_13681481_SNP [dm3] X_13787448_SNP [dm6]	T	G	3.702e^-4	0.693	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn

By genomic position
Variant impact
Gene name

Delta_Death.at.48h Experience 1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results