DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.784e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09816

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1266 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11661375	X_11661375_SNP [dm3] X_11767342_SNP [dm6]	C	G	1.212e^-5	0.851	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
3L	17934912	3L_17934912_SNP [dm3] 3L_17941812_SNP [dm6]	T	C	1.385e^-5	0.851	INTRON CG43174
3L	17934864	3L_17934864_SNP [dm3] 3L_17941764_SNP [dm6]	G	T	1.522e^-5	0.851	INTRON CG43174	TF binding site mE1_TFBS_HSA
3R	26456440	3R_26456440_DEL [dm3] 3R_30630718_DEL [dm6]	ACTA	A	1.621e^-5	0.851	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18775847	2R_18775847_SNP [dm3] 2R_22888324_SNP [dm6]	T	G	1.661e^-5	0.851	SYNONYMOUS_CODING Gmer UPSTREAM MED23 DOWNSTREAM asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	8809578	3L_8809578_SNP [dm3] 3L_8816478_SNP [dm6]	T	A	2.096e^-5	0.851	INTERGENIC
3L	17934858	3L_17934858_SNP [dm3] 3L_17941758_SNP [dm6]	G	T	2.900e^-5	0.851	INTRON CG43174	TF binding site mE1_TFBS_HSA
3L	2365224	3L_2365224_SNP [dm3] 3L_2365224_SNP [dm6]	G	A	2.916e^-5	0.851	INTERGENIC
3L	2365246	3L_2365246_INS [dm3] 3L_2365246_INS [dm6]	T	TGGTT	2.916e^-5	0.851	INTERGENIC
2L	10253470	2L_10253470_SNP [dm3] 2L_10253470_SNP [dm6]	G	A	3.434e^-5	0.851	NON_SYNONYMOUS_CODING Ror
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	3.577e^-5	0.851	INTERGENIC
3L	18359463	3L_18359463_SNP [dm3] 3L_18366363_SNP [dm6]	T	C	3.616e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15967419	3R_15967419_SNP [dm3] 3R_20141697_SNP [dm6]	C	A	3.729e^-5	0.851	INTERGENIC
3L	4056711	3L_4056711_SNP [dm3] 3L_4056711_SNP [dm6]	T	G	3.764e^-5	0.851	INTRON CG1136	TF binding site mE1_TFBS_cad
3L	17891927	3L_17891927_SNP [dm3] 3L_17898827_SNP [dm6]	T	C	4.076e^-5	0.851	DOWNSTREAM Prestin INTERGENIC
3L	8122502	3L_8122502_SNP [dm3] 3L_8129402_SNP [dm6]	A	T	4.177e^-5	0.851	INTRON CdsA
X	13577007	X_13577007_SNP [dm3] X_13682974_SNP [dm6]	A	G	4.857e^-5	0.851	UTR_5_PRIME CG11158
X	2331802	X_2331802_SNP [dm3] X_2437769_SNP [dm6]	T	C	4.895e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20197857	2R_20197857_SNP [dm3] 2R_24310334_SNP [dm6]	C	T	5.044e^-5	0.851	INTRON betaTub60D
2L	15520803	2L_15520803_SNP [dm3] 2L_15520803_SNP [dm6]	C	A	5.048e^-5	0.851	INTERGENIC
3L	8997732	3L_8997732_SNP [dm3] 3L_9004632_SNP [dm6]	T	C	5.217e^-5	0.851	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4709932	2R_4709932_SNP [dm3] 2R_8822427_SNP [dm6]	C	G	5.229e^-5	0.851	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	17740227	3L_17740227_SNP [dm3] 3L_17747127_SNP [dm6]	G	A	5.536e^-5	0.851	UPSTREAM CG6034 INTRON Ccn
3L	17740673	3L_17740673_SNP [dm3] 3L_17747573_SNP [dm6]	C	T	5.536e^-5	0.851	UPSTREAM CG6034 INTRON Ccn
3L	5649567	3L_5649567_SNP [dm3] 3L_5656467_SNP [dm6]	C	T	5.594e^-5	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18595583	3R_18595583_SNP [dm3] 3R_22769861_SNP [dm6]	T	A	5.633e^-5	0.851	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3L	6649799	3L_6649799_SNP [dm3] 3L_6656699_SNP [dm6]	T	C	5.822e^-5	0.851	INTERGENIC
2R	15321616	2R_15321616_SNP [dm3] 2R_19434111_SNP [dm6]	A	G	5.854e^-5	0.851	SPLICE_SITE_REGION Fak INTRON Fak
2R	15321635	2R_15321635_SNP [dm3] 2R_19434130_SNP [dm6]	C	A	5.854e^-5	0.851	INTRON Fak
2R	15321639	2R_15321639_DEL [dm3] 2R_19434134_DEL [dm6]	GTT	A	5.854e^-5	0.851	INTRON Fak
3L	5649597	3L_5649597_SNP [dm3] 3L_5656497_SNP [dm6]	A	G	5.926e^-5	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649600	3L_5649600_SNP [dm3] 3L_5656500_SNP [dm6]	G	A	5.926e^-5	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13971850	3L_13971850_SNP [dm3] 3L_13978750_SNP [dm6]	C	A	6.007e^-5	0.851	UTR_3_PRIME CG17364 DOWNSTREAM Hsc70-1
X	21129194	X_21129194_SNP [dm3] X_21258167_SNP [dm6]	T	A	6.242e^-5	0.851	INTRON CG32521
3R	18658172	3R_18658172_SNP [dm3] 3R_22832450_SNP [dm6]	A	T	6.290e^-5	0.851	INTERGENIC
3L	6372137	3L_6372137_SNP [dm3] 3L_6379037_SNP [dm6]	T	A	6.545e^-5	0.851	INTERGENIC
2R	15030513	2R_15030513_SNP [dm3] 2R_19143008_SNP [dm6]	T	C	6.589e^-5	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5248343	2L_5248343_SNP [dm3] 2L_5248343_SNP [dm6]	A	C	6.663e^-5	0.851	INTRON tkv
2L	5248349	2L_5248349_SNP [dm3] 2L_5248349_SNP [dm6]	G	A	6.663e^-5	0.851	INTRON tkv
2L	4442692	2L_4442692_SNP [dm3] 2L_4442692_SNP [dm6]	C	A	6.928e^-5	0.851	SYNONYMOUS_CODING CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	2331776	X_2331776_SNP [dm3] X_2437743_SNP [dm6]	C	T	7.086e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8323993	2L_8323993_SNP [dm3] 2L_8323993_SNP [dm6]	G	T	7.170e^-5	0.851	INTRON CG7781
2L	12260858	2L_12260858_SNP [dm3] 2L_12260858_SNP [dm6]	A	T	7.248e^-5	0.851	INTRON aret
2L	8323937	2L_8323937_SNP [dm3] 2L_8323937_SNP [dm6]	A	G	7.340e^-5	0.851	INTRON CG7781
2L	17417681	2L_17417681_SNP [dm3] 2L_17417681_SNP [dm6]	T	C	7.538e^-5	0.851	INTRON Dif
3L	14084423	3L_14084423_SNP [dm3] 3L_14091323_SNP [dm6]	G	C	7.663e^-5	0.851	INTERGENIC
3L	8472576	3L_8472576_SNP [dm3] 3L_8479476_SNP [dm6]	A	C	7.683e^-5	0.851	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	9610105	2R_9610105_DEL [dm3] 2R_13722600_DEL [dm6]	GG	G	8.072e^-5	0.851	INTRON fas
3R	18004542	3R_18004542_DEL [dm3] 3R_22178820_DEL [dm6]	TT	T	8.203e^-5	0.851	INTRON SKIP
3R	18004547	3R_18004547_SNP [dm3] 3R_22178825_SNP [dm6]	G	T	8.203e^-5	0.851	INTRON SKIP
3L	5649582	3L_5649582_SNP [dm3] 3L_5656482_SNP [dm6]	C	A	8.266e^-5	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13866409	X_13866409_SNP [dm3] X_13972376_SNP [dm6]	T	G	8.553e^-5	0.851	INTRON mamo
2L	8750335	2L_8750335_SNP [dm3] 2L_8750335_SNP [dm6]	T	A	8.593e^-5	0.851	INTERGENIC
2L	15473943	2L_15473943_SNP [dm3] 2L_15473943_SNP [dm6]	A	C	8.638e^-5	0.851	INTERGENIC	regulatory region REDfly_CRMs
3R	18595619	3R_18595619_SNP [dm3] 3R_22769897_SNP [dm6]	G	A	8.710e^-5	0.851	SYNONYMOUS_CODING CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3L	17738232	3L_17738232_SNP [dm3] 3L_17745132_SNP [dm6]	G	A	8.854e^-5	0.851	DOWNSTREAM CG6034 INTRON Ccn
2L	16665677	2L_16665677_SNP [dm3] 2L_16665677_SNP [dm6]	G	C	9.003e^-5	0.851	INTRON Trpgamma	transposable element FlyBase
3R	16863149	3R_16863149_SNP [dm3] 3R_21037427_SNP [dm6]	A	T	9.191e^-5	0.851	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3L	5649702	3L_5649702_SNP [dm3] 3L_5656602_SNP [dm6]	T	C	9.238e^-5	0.851	SPLICE_SITE_REGION lin-28 INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	17744152	3L_17744152_SNP [dm3] 3L_17751052_SNP [dm6]	T	A	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744158	3L_17744158_SNP [dm3] 3L_17751058_SNP [dm6]	G	C	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744163	3L_17744163_SNP [dm3] 3L_17751063_SNP [dm6]	C	T	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744164	3L_17744164_SNP [dm3] 3L_17751064_SNP [dm6]	C	T	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744170	3L_17744170_SNP [dm3] 3L_17751070_SNP [dm6]	A	T	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744173	3L_17744173_SNP [dm3] 3L_17751073_SNP [dm6]	A	G	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744175	3L_17744175_SNP [dm3] 3L_17751075_SNP [dm6]	T	A	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744179	3L_17744179_MNP [dm3] 3L_17751079_MNP [dm6]	GAA	TTC	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744188	3L_17744188_SNP [dm3] 3L_17751088_SNP [dm6]	T	C	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744189	3L_17744189_SNP [dm3] 3L_17751089_SNP [dm6]	A	T	9.313e^-5	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
X	6455644	X_6455644_SNP [dm3] X_6561611_SNP [dm6]	G	C	9.321e^-5	0.851	INTRON CG34417	TF binding site mE1_TFBS_sens
3L	17493796	3L_17493796_SNP [dm3] 3L_17500696_SNP [dm6]	G	T	9.477e^-5	0.851	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18957747	2R_18957747_DEL [dm3] 2R_23070224_DEL [dm6]	AAA	A	9.514e^-5	0.851	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6329796	2L_6329796_SNP [dm3] 2L_6329796_SNP [dm6]	T	G	9.805e^-5	0.851	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
2R	9901605	2R_9901605_SNP [dm3] 2R_14014100_SNP [dm6]	A	T	9.894e^-5	0.851	INTRON mam
3L	3124541	3L_3124541_SNP [dm3] 3L_3124541_SNP [dm6]	T	C	9.959e^-5	0.851	INTRON prominin-like
3L	17739962	3L_17739962_SNP [dm3] 3L_17746862_SNP [dm6]	G	A	1.039e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3L	22981254	3L_22981254_SNP [dm3] 3L_22988154_SNP [dm6]	T	G	1.041e^-4	0.851	NON_SYNONYMOUS_CODING CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22981290	3L_22981290_SNP [dm3] 3L_22988190_SNP [dm6]	A	G	1.041e^-4	0.851	UTR_3_PRIME CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20153373	3L_20153373_SNP [dm3] 3L_20160273_SNP [dm6]	G	A	1.046e^-4	0.851	INTRON CG42674
2R	12044760	2R_12044760_SNP [dm3] 2R_16157255_SNP [dm6]	A	C	1.080e^-4	0.851	DOWNSTREAM CG10734 INTRON lbk
3L	2921006	3L_2921006_SNP [dm3] 3L_2921006_SNP [dm6]	T	C	1.084e^-4	0.851	INTRON Shab
3L	10239681	3L_10239681_SNP [dm3] 3L_10246581_SNP [dm6]	C	A	1.090e^-4	0.851	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
3L	5649605	3L_5649605_INS [dm3] 3L_5656505_INS [dm6]	G	GTCAG	1.099e^-4	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649620	3L_5649620_MNP [dm3] 3L_5656520_MNP [dm6]	CGA	TAT	1.099e^-4	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649626	3L_5649626_SNP [dm3] 3L_5656526_SNP [dm6]	A	C	1.099e^-4	0.851	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18595575	3R_18595575_SNP [dm3] 3R_22769853_SNP [dm6]	A	C	1.103e^-4	0.851	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	18595578	3R_18595578_SNP [dm3] 3R_22769856_SNP [dm6]	G	A	1.103e^-4	0.851	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2L	7903877	2L_7903877_SNP [dm3] 2L_7903877_SNP [dm6]	A	T	1.117e^-4	0.851	INTRON Snoo
2R	15321646	2R_15321646_SNP [dm3] 2R_19434141_SNP [dm6]	A	T	1.125e^-4	0.851	INTRON Fak
X	6455411	X_6455411_SNP [dm3] X_6561378_SNP [dm6]	A	G	1.126e^-4	0.851	SYNONYMOUS_CODING CG34417
3L	22981275	3L_22981275_SNP [dm3] 3L_22988175_SNP [dm6]	G	T	1.157e^-4	0.851	UTR_3_PRIME CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17040295	3L_17040295_SNP [dm3] 3L_17047195_SNP [dm6]	A	G	1.174e^-4	0.851	INTRON TpnC73F
X	21907317	X_21907317_SNP [dm3] X_22505481_SNP [dm6]	A	G	1.188e^-4	0.851	INTRON l_1_G0196	TF binding site mE1_TFBS_chinmo
X	21129187	X_21129187_SNP [dm3] X_21258160_SNP [dm6]	T	G	1.194e^-4	0.851	INTRON CG32521
3R	27018881	3R_27018881_SNP [dm3] 3R_31193159_SNP [dm6]	T	A	1.199e^-4	0.851	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14084389	3L_14084389_SNP [dm3] 3L_14091289_SNP [dm6]	T	G	1.212e^-4	0.851	INTERGENIC
X	16234624	X_16234624_SNP [dm3] X_16340591_SNP [dm6]	G	C	1.233e^-4	0.851	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1
2L	17417699	2L_17417699_SNP [dm3] 2L_17417699_SNP [dm6]	T	C	1.262e^-4	0.851	INTRON Dif
2R	18325632	2R_18325632_SNP [dm3] 2R_22438127_SNP [dm6]	T	A	1.263e^-4	0.851	INTERGENIC
3L	8242722	3L_8242722_SNP [dm3] 3L_8249622_SNP [dm6]	A	T	1.275e^-4	0.851	INTRON Dscam4
2L	21911534	2L_21911534_SNP [dm3] 2L_21911534_SNP [dm6]	A	G	1.297e^-4	0.851	INTERGENIC
3L	17739865	3L_17739865_SNP [dm3] 3L_17746765_SNP [dm6]	C	T	1.365e^-4	0.851	SYNONYMOUS_CODING CG6034 INTRON Ccn
3R	18522322	3R_18522322_SNP [dm3] 3R_22696600_SNP [dm6]	T	C	1.395e^-4	0.851	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10249200	3R_10249200_SNP [dm3] 3R_14423478_SNP [dm6]	A	G	1.401e^-4	0.851	UPSTREAM CR44176 INTRON cv-c
X	16234702	X_16234702_SNP [dm3] X_16340669_SNP [dm6]	T	G	1.421e^-4	0.851	DOWNSTREAM Dsp1 INTERGENIC
2L	4451422	2L_4451422_SNP [dm3] 2L_4451422_SNP [dm6]	A	T	1.439e^-4	0.851	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17156963	3L_17156963_SNP [dm3] 3L_17163863_SNP [dm6]	G	C	1.440e^-4	0.851	INTRON Rbp6
3L	17156976	3L_17156976_SNP [dm3] 3L_17163876_SNP [dm6]	A	T	1.440e^-4	0.851	INTRON Rbp6
3L	17156985	3L_17156985_SNP [dm3] 3L_17163885_SNP [dm6]	G	A	1.440e^-4	0.851	INTRON Rbp6
3L	17156994	3L_17156994_SNP [dm3] 3L_17163894_SNP [dm6]	C	T	1.440e^-4	0.851	INTRON Rbp6
2L	6509754	2L_6509754_SNP [dm3] 2L_6509754_SNP [dm6]	C	T	1.448e^-4	0.851	INTRON CG31637
X	6093230	X_6093230_SNP [dm3] X_6199197_SNP [dm6]	A	T	1.450e^-4	0.851	UPSTREAM CG32751 DOWNSTREAM CG43090 & 1 other INTERGENIC
2R	7070027	2R_7070027_SNP [dm3] 2R_11182522_SNP [dm6]	T	G	1.453e^-4	0.851	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7070036	2R_7070036_SNP [dm3] 2R_11182531_SNP [dm6]	G	C	1.453e^-4	0.851	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9968626	2L_9968626_INS [dm3] 2L_9968626_INS [dm6]	A	AA	1.479e^-4	0.851	UTR_3_PRIME RpL13 DOWNSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12718972	3L_12718972_SNP [dm3] 3L_12725872_SNP [dm6]	A	G	1.492e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5304974	2L_5304974_SNP [dm3] 2L_5304974_SNP [dm6]	A	C	1.498e^-4	0.851	UPSTREAM vri INTRON vri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5248347	2L_5248347_SNP [dm3] 2L_5248347_SNP [dm6]	A	G	1.504e^-4	0.851	INTRON tkv
2R	6174270	2R_6174270_SNP [dm3] 2R_10286765_SNP [dm6]	A	C	1.530e^-4	0.851	DOWNSTREAM CAP INTRON CAP
X	9228222	X_9228222_SNP [dm3] X_9334189_SNP [dm6]	G	T	1.538e^-4	0.851	INTRON CG34449
2R	3228744	2R_3228744_DEL [dm3] 2R_7341239_DEL [dm6]	GG	G	1.538e^-4	0.851	SPLICE_SITE_REGION Dscam1 INTRON Dscam1
2R	7160096	2R_7160096_SNP [dm3] 2R_11272591_SNP [dm6]	A	G	1.539e^-4	0.851	UPSTREAM Cpr47Ef INTERGENIC	TF binding site mE1_TFBS_cad
3L	17744182	3L_17744182_DEL [dm3] 3L_17751082_DEL [dm6]	AAA	A	1.545e^-4	0.851	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	1.553e^-4	0.851	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	1.553e^-4	0.851	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15266930	X_15266930_INS [dm3] X_15372897_INS [dm6]	C	CAC	1.565e^-4	0.851	INTRON acj6	TF binding site BDTNP1_TFBS_dl
2R	15030371	2R_15030371_SNP [dm3] 2R_19142866_SNP [dm6]	G	A	1.569e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17939479	3L_17939479_SNP [dm3] 3L_17946379_SNP [dm6]	A	G	1.574e^-4	0.851	DOWNSTREAM CG43174 & 1 other INTERGENIC
3L	6445121	3L_6445121_SNP [dm3] 3L_6452021_SNP [dm6]	G	T	1.582e^-4	0.851	INTRON CG42747
3L	14320585	3L_14320585_SNP [dm3] 3L_14327485_SNP [dm6]	C	A	1.591e^-4	0.851	INTRON fz
2R	10286749	2R_10286749_SNP [dm3] 2R_14399244_SNP [dm6]	A	G	1.593e^-4	0.851	INTERGENIC
3R	18984689	3R_18984689_SNP [dm3] 3R_23158967_SNP [dm6]	G	A	1.596e^-4	0.851	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13923955	X_13923955_SNP [dm3] X_14029922_SNP [dm6]	A	T	1.602e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13923970	X_13923970_SNP [dm3] X_14029937_SNP [dm6]	C	G	1.602e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5694971	2R_5694971_SNP [dm3] 2R_9807466_SNP [dm6]	T	G	1.612e^-4	0.851	UPSTREAM CG1688 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10014693	3L_10014693_SNP [dm3] 3L_10021593_SNP [dm6]	G	C	1.627e^-4	0.851	INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17740063	3L_17740063_SNP [dm3] 3L_17746963_SNP [dm6]	C	T	1.654e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3L	14324802	3L_14324802_SNP [dm3] 3L_14331702_SNP [dm6]	C	A	1.674e^-4	0.851	INTRON fz
3L	14561311	3L_14561311_SNP [dm3] 3L_14568211_SNP [dm6]	C	T	1.686e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561313	3L_14561313_SNP [dm3] 3L_14568213_SNP [dm6]	T	A	1.686e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561324	3L_14561324_SNP [dm3] 3L_14568224_SNP [dm6]	A	T	1.686e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
2L	14722372	2L_14722372_SNP [dm3] 2L_14722372_SNP [dm6]	A	G	1.698e^-4	0.851	INTERGENIC
X	19200287	X_19200287_SNP [dm3] X_19306254_SNP [dm6]	A	T	1.718e^-4	0.851	UPSTREAM CG8051 INTRON CG8051
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	1.724e^-4	0.851	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
2R	19902815	2R_19902815_SNP [dm3] 2R_24015292_SNP [dm6]	A	T	1.731e^-4	0.851	INTRON CG4324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13643177	X_13643177_SNP [dm3] X_13749144_SNP [dm6]	A	G	1.746e^-4	0.851	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21203903	3R_21203903_SNP [dm3] 3R_25378181_SNP [dm6]	A	T	1.774e^-4	0.851	INTRON Fur1
X	14295038	X_14295038_SNP [dm3] X_14401005_SNP [dm6]	C	T	1.776e^-4	0.851	INTRON dpr8
3L	14561267	3L_14561267_SNP [dm3] 3L_14568167_SNP [dm6]	G	T	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561276	3L_14561276_DEL [dm3] 3L_14568176_DEL [dm6]	ATA	A	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561280	3L_14561280_SNP [dm3] 3L_14568180_SNP [dm6]	A	T	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561289	3L_14561289_SNP [dm3] 3L_14568189_SNP [dm6]	C	T	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561298	3L_14561298_SNP [dm3] 3L_14568198_SNP [dm6]	G	C	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	14561308	3L_14561308_SNP [dm3] 3L_14568208_SNP [dm6]	C	G	1.787e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
X	16164394	X_16164394_SNP [dm3] X_16270361_SNP [dm6]	A	G	1.793e^-4	0.851	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24707385	3R_24707385_SNP [dm3] 3R_28881663_SNP [dm6]	C	T	1.834e^-4	0.851	SYNONYMOUS_CODING CG14527 INTRON CG33203
2R	6725841	2R_6725841_SNP [dm3] 2R_10838336_SNP [dm6]	A	G	1.840e^-4	0.851	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13800618	2R_13800618_SNP [dm3] 2R_17913113_SNP [dm6]	T	C	1.902e^-4	0.851	INTRON Elk
3L	3446459	3L_3446459_SNP [dm3] 3L_3446459_SNP [dm6]	G	A	1.909e^-4	0.851	INTRON eIF5B
3L	17243232	3L_17243232_SNP [dm3] 3L_17250132_SNP [dm6]	A	T	1.940e^-4	0.851	INTRON CR43870
3L	3446425	3L_3446425_SNP [dm3] 3L_3446425_SNP [dm6]	G	A	1.953e^-4	0.851	INTRON eIF5B
X	9741759	X_9741759_SNP [dm3] X_9847726_SNP [dm6]	G	T	1.958e^-4	0.851	INTRON CG32698
X	12838031	X_12838031_SNP [dm3] X_12943998_SNP [dm6]	A	T	1.968e^-4	0.851	INTRON fne
3L	18215011	3L_18215011_SNP [dm3] 3L_18221911_SNP [dm6]	C	T	1.983e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7012816	2L_7012816_SNP [dm3] 2L_7012816_SNP [dm6]	C	G	2.000e^-4	0.851	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
3R	5104352	3R_5104352_SNP [dm3] 3R_9278630_SNP [dm6]	C	A	2.006e^-4	0.851	INTERGENIC
3R	5602156	3R_5602156_SNP [dm3] 3R_9776434_SNP [dm6]	T	C	2.029e^-4	0.851	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15680879	3R_15680879_SNP [dm3] 3R_19855157_SNP [dm6]	A	G	2.037e^-4	0.851	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
3R	18004558	3R_18004558_SNP [dm3] 3R_22178836_SNP [dm6]	C	G	2.049e^-4	0.851	INTRON SKIP
3L	6111801	3L_6111801_SNP [dm3] 3L_6118701_SNP [dm6]	C	T	2.059e^-4	0.851	INTRON Ets65A
3L	7820420	3L_7820420_SNP [dm3] 3L_7827320_SNP [dm6]	T	A	2.070e^-4	0.851	INTRON Pdp1
3L	1022223	3L_1022223_SNP [dm3] 3L_1022223_SNP [dm6]	G	A	2.083e^-4	0.851	INTRON trio
3L	18151768	3L_18151768_SNP [dm3] 3L_18158668_SNP [dm6]	G	A	2.094e^-4	0.851	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3409790	2L_3409790_SNP [dm3] 2L_3409790_SNP [dm6]	G	T	2.103e^-4	0.851	UPSTREAM CG8840 INTRON pgant2
2R	18774201	2R_18774201_SNP [dm3] 2R_22886678_SNP [dm6]	A	T	2.104e^-4	0.851	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6498843	2L_6498843_SNP [dm3] 2L_6498843_SNP [dm6]	C	T	2.111e^-4	0.851	UTR_5_PRIME CG31637 DOWNSTREAM CG9550	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	17157024	3L_17157024_SNP [dm3] 3L_17163924_SNP [dm6]	T	G	2.116e^-4	0.851	INTRON Rbp6
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	2.120e^-4	0.851	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7820397	3L_7820397_SNP [dm3] 3L_7827297_SNP [dm6]	G	T	2.123e^-4	0.851	INTRON Pdp1
3R	19915706	3R_19915706_SNP [dm3] 3R_24089984_SNP [dm6]	G	C	2.123e^-4	0.851	INTRON 4EHP
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	2.124e^-4	0.851	UTR_5_PRIME CG43174
X	16726433	X_16726433_INS [dm3] X_16832400_INS [dm6]	C	CAC	2.143e^-4	0.851	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
2L	17529464	2L_17529464_SNP [dm3] 2L_17529464_SNP [dm6]	T	A	2.152e^-4	0.851	UTR_3_PRIME CG15145 UPSTREAM CG15144
3L	828922	3L_828922_SNP [dm3] 3L_828922_SNP [dm6]	T	G	2.187e^-4	0.851	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me5.8S-G74 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14381385	2L_14381385_SNP [dm3] 2L_14381385_SNP [dm6]	T	G	2.207e^-4	0.851	UPSTREAM ppk INTERGENIC
2R	16122527	2R_16122527_SNP [dm3] 2R_20235022_SNP [dm6]	A	T	2.212e^-4	0.851	START_GAINED CG44624 UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	16122529	2R_16122529_SNP [dm3] 2R_20235024_SNP [dm6]	G	C	2.212e^-4	0.851	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	12399641	2R_12399641_SNP [dm3] 2R_16512136_SNP [dm6]	G	C	2.255e^-4	0.851	INTRON Sema-2a
3L	6361188	3L_6361188_SNP [dm3] 3L_6368088_SNP [dm6]	T	C	2.259e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	9594322	2R_9594322_SNP [dm3] 2R_13706817_SNP [dm6]	C	A	2.266e^-4	0.851	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14835797	3L_14835797_SNP [dm3] 3L_14842697_SNP [dm6]	G	C	2.275e^-4	0.851	INTRON CG17839
2R	15030639	2R_15030639_SNP [dm3] 2R_19143134_SNP [dm6]	C	T	2.277e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	15473950	2L_15473950_SNP [dm3] 2L_15473950_SNP [dm6]	A	G	2.280e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
3R	17415803	3R_17415803_SNP [dm3] 3R_21590081_SNP [dm6]	C	A	2.309e^-4	0.851	UTR_5_PRIME InR INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17937317	3L_17937317_SNP [dm3] 3L_17944217_SNP [dm6]	T	A	2.311e^-4	0.851	INTRON CG43174
3L	17937326	3L_17937326_SNP [dm3] 3L_17944226_SNP [dm6]	A	G	2.311e^-4	0.851	INTRON CG43174
3L	7431963	3L_7431963_SNP [dm3] 3L_7438863_SNP [dm6]	C	A	2.334e^-4	0.851	SYNONYMOUS_CODING sphinx1 DOWNSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_inv
2R	10511904	2R_10511904_SNP [dm3] 2R_14624399_SNP [dm6]	A	G	2.339e^-4	0.851	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12212794	2L_12212794_SNP [dm3] 2L_12212794_SNP [dm6]	C	T	2.353e^-4	0.851	INTRON aret
2L	15473934	2L_15473934_SNP [dm3] 2L_15473934_SNP [dm6]	G	T	2.355e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
X	18945107	X_18945107_SNP [dm3] X_19051074_SNP [dm6]	A	T	2.359e^-4	0.851	UTR_3_PRIME Diedel3 DOWNSTREAM Diedel3
3L	18151802	3L_18151802_SNP [dm3] 3L_18158702_SNP [dm6]	A	C	2.361e^-4	0.851	INTRON CG13699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	2.363e^-4	0.851	INTRON Mef2
X	8142539	X_8142539_INS [dm3] X_8248506_INS [dm6]	G	GTATG	2.372e^-4	0.851	DOWNSTREAM ND75 & 1 other INTERGENIC
3R	9864419	3R_9864419_SNP [dm3] 3R_14038697_SNP [dm6]	C	T	2.380e^-4	0.851	INTERGENIC
3R	18004585	3R_18004585_SNP [dm3] 3R_22178863_SNP [dm6]	A	T	2.384e^-4	0.851	INTRON SKIP
2R	13592889	2R_13592889_SNP [dm3] 2R_17705384_SNP [dm6]	G	A	2.396e^-4	0.851	INTRON CG6424
X	3153646	X_3153646_SNP [dm3] X_3259613_SNP [dm6]	G	C	2.425e^-4	0.851	INTRON dnc
3L	2922417	3L_2922417_SNP [dm3] 3L_2922417_SNP [dm6]	G	A	2.448e^-4	0.851	INTRON Shab
2L	4425328	2L_4425328_SNP [dm3] 2L_4425328_SNP [dm6]	A	G	2.455e^-4	0.851	INTRON CG15431
2L	4432858	2L_4432858_SNP [dm3] 2L_4432858_SNP [dm6]	C	A	2.455e^-4	0.851	INTRON CG15431
2L	4432862	2L_4432862_SNP [dm3] 2L_4432862_SNP [dm6]	A	C	2.455e^-4	0.851	INTRON CG15431
2L	4432869	2L_4432869_SNP [dm3] 2L_4432869_SNP [dm6]	A	T	2.455e^-4	0.851	INTRON CG15431
2R	3264665	2R_3264665_SNP [dm3] 2R_7377160_SNP [dm6]	C	T	2.455e^-4	0.851	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6099207	X_6099207_SNP [dm3] X_6205174_SNP [dm6]	T	A	2.455e^-4	0.851	INTERGENIC
3R	9642285	3R_9642285_SNP [dm3] 3R_13816563_SNP [dm6]	C	G	2.464e^-4	0.851	DOWNSTREAM CR43641 EXON CR43642	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4302779	X_4302779_SNP [dm3] X_4408746_SNP [dm6]	A	G	2.466e^-4	0.851	INTRON CR32773
3R	10600659	3R_10600659_SNP [dm3] 3R_14774937_SNP [dm6]	T	A	2.471e^-4	0.851	INTRON jvl
3R	10600664	3R_10600664_SNP [dm3] 3R_14774942_SNP [dm6]	C	A	2.471e^-4	0.851	INTRON jvl
2L	20679133	2L_20679133_SNP [dm3] 2L_20679133_SNP [dm6]	A	T	2.476e^-4	0.851	NON_SYNONYMOUS_CODING Cen DOWNSTREAM ik2
2R	18777912	2R_18777912_SNP [dm3] 2R_22890389_SNP [dm6]	C	T	2.482e^-4	0.851	INTRON MED23	TF binding site mE1_TFBS_cad
X	8988674	X_8988674_SNP [dm3] X_9094641_SNP [dm6]	C	G	2.492e^-4	0.851	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4988103	2L_4988103_SNP [dm3] 2L_4988103_SNP [dm6]	T	G	2.492e^-4	0.851	INTRON CG34126	TF binding site mE1_TFBS_sens
X	2331762	X_2331762_SNP [dm3] X_2437729_SNP [dm6]	C	G	2.495e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21903678	2L_21903678_SNP [dm3] 2L_21903678_SNP [dm6]	C	T	2.500e^-4	0.851	NON_SYNONYMOUS_CODING CG1421
2R	18774852	2R_18774852_SNP [dm3] 2R_22887329_SNP [dm6]	A	G	2.507e^-4	0.851	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18128850	3L_18128850_SNP [dm3] 3L_18135750_SNP [dm6]	G	A	2.512e^-4	0.851	DOWNSTREAM CR44669 INTERGENIC
2R	12910046	2R_12910046_SNP [dm3] 2R_17022541_SNP [dm6]	C	T	2.513e^-4	0.851	SYNONYMOUS_CODING Ark	TF binding site mE1_TFBS_sens
3L	8757018	3L_8757018_DEL [dm3] 3L_8763918_DEL [dm6]	AT	A	2.514e^-4	0.851	INTRON Fhos
3L	18857211	3L_18857211_SNP [dm3] 3L_18864111_SNP [dm6]	G	T	2.552e^-4	0.851	UPSTREAM CG6865 INTRON CG6865
2L	2259386	2L_2259386_SNP [dm3] 2L_2259386_SNP [dm6]	C	T	2.595e^-4	0.851	DOWNSTREAM CR44788 INTERGENIC
2L	2259404	2L_2259404_SNP [dm3] 2L_2259404_SNP [dm6]	T	C	2.595e^-4	0.851	EXON CR44788
2L	2259406	2L_2259406_SNP [dm3] 2L_2259406_SNP [dm6]	C	T	2.595e^-4	0.851	EXON CR44788
2L	2259407	2L_2259407_SNP [dm3] 2L_2259407_SNP [dm6]	T	C	2.595e^-4	0.851	EXON CR44788
2R	8891260	2R_8891260_SNP [dm3] 2R_13003755_SNP [dm6]	C	T	2.595e^-4	0.851	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12605689	3L_12605689_SNP [dm3] 3L_12612589_SNP [dm6]	C	G	2.595e^-4	0.851	INTRON caup
3L	12606083	3L_12606083_SNP [dm3] 3L_12612983_SNP [dm6]	C	T	2.595e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
3L	18574818	3L_18574818_SNP [dm3] 3L_18581718_SNP [dm6]	C	T	2.598e^-4	0.851	INTERGENIC
2L	16665679	2L_16665679_SNP [dm3] 2L_16665679_SNP [dm6]	G	T	2.605e^-4	0.851	INTRON Trpgamma	transposable element FlyBase
3L	5164755	3L_5164755_SNP [dm3] 3L_5171655_SNP [dm6]	A	G	2.623e^-4	0.851	INTRON shep
2R	8888926	2R_8888926_SNP [dm3] 2R_13001421_SNP [dm6]	G	A	2.627e^-4	0.851	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8888932	2R_8888932_SNP [dm3] 2R_13001427_SNP [dm6]	G	A	2.627e^-4	0.851	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12467368	2L_12467368_SNP [dm3] 2L_12467368_SNP [dm6]	A	T	2.635e^-4	0.851	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10982508	3R_10982508_SNP [dm3] 3R_15156786_SNP [dm6]	G	A	2.650e^-4	0.851	INTRON Gyc88E
3L	2662578	3L_2662578_SNP [dm3] 3L_2662578_SNP [dm6]	G	A	2.651e^-4	0.851	SYNONYMOUS_CODING CG33234 INTRON Fife
X	7258785	X_7258785_SNP [dm3] X_7364752_SNP [dm6]	T	A	2.651e^-4	0.851	INTRON CG1677 & 1 other
X	7258786	X_7258786_SNP [dm3] X_7364753_SNP [dm6]	C	T	2.651e^-4	0.851	INTRON CG1677 & 1 other
2R	10663078	2R_10663078_SNP [dm3] 2R_14775573_SNP [dm6]	G	A	2.701e^-4	0.851	SYNONYMOUS_CODING kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14324825	3L_14324825_SNP [dm3] 3L_14331725_SNP [dm6]	A	G	2.703e^-4	0.851	INTRON fz
3L	17156999	3L_17156999_SNP [dm3] 3L_17163899_SNP [dm6]	A	T	2.719e^-4	0.851	INTRON Rbp6
3L	15604377	3L_15604377_SNP [dm3] 3L_15611277_SNP [dm6]	A	T	2.723e^-4	0.851	NON_SYNONYMOUS_CODING CG13449 UPSTREAM CG7650
3L	7715556	3L_7715556_SNP [dm3] 3L_7722456_SNP [dm6]	T	C	2.732e^-4	0.851	SYNONYMOUS_CODING CG7457 DOWNSTREAM CG12262 INTRON CG32373
3L	5345998	3L_5345998_SNP [dm3] 3L_5352898_SNP [dm6]	T	C	2.742e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20198196	2R_20198196_SNP [dm3] 2R_24310673_SNP [dm6]	T	C	2.743e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	2.743e^-4	0.851	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14987097	2R_14987097_SNP [dm3] 2R_19099592_SNP [dm6]	C	T	2.753e^-4	0.851	INTRON 5-HT1A
2R	14895499	2R_14895499_SNP [dm3] 2R_19007994_SNP [dm6]	T	A	2.761e^-4	0.851	INTRON tn
3R	19597042	3R_19597042_SNP [dm3] 3R_23771320_SNP [dm6]	T	C	2.762e^-4	0.851	SYNONYMOUS_CODING tst
2R	3197299	2R_3197299_SNP [dm3] 2R_7309794_SNP [dm6]	T	G	2.763e^-4	0.851	INTERGENIC
2L	2263863	2L_2263863_SNP [dm3] 2L_2263863_SNP [dm6]	C	T	2.764e^-4	0.851	SYNONYMOUS_CODING CG4270 DOWNSTREAM CG34049
3L	18214947	3L_18214947_SNP [dm3] 3L_18221847_SNP [dm6]	C	T	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214951	3L_18214951_SNP [dm3] 3L_18221851_SNP [dm6]	C	A	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214954	3L_18214954_INS [dm3] 3L_18221854_INS [dm6]	A	AAGTCAGTG	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215017	3L_18215017_SNP [dm3] 3L_18221917_SNP [dm6]	A	T	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215020	3L_18215020_SNP [dm3] 3L_18221920_SNP [dm6]	G	T	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215026	3L_18215026_SNP [dm3] 3L_18221926_SNP [dm6]	A	C	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215028	3L_18215028_MNP [dm3] 3L_18221928_MNP [dm6]	ACA	TTT	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215033	3L_18215033_INS [dm3] 3L_18221933_INS [dm6]	TT	AAGCGCAAA	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215057	3L_18215057_MNP [dm3] 3L_18221957_MNP [dm6]	TAA	GTG	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215086	3L_18215086_DEL [dm3] 3L_18221986_DEL [dm6]	TTTTT	AC	2.773e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14485811	3L_14485811_SNP [dm3] 3L_14492711_SNP [dm6]	G	A	2.786e^-4	0.851	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9757828	3R_9757828_SNP [dm3] 3R_13932106_SNP [dm6]	A	G	2.794e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	9467641	X_9467641_SNP [dm3] X_9573608_SNP [dm6]	G	A	2.808e^-4	0.851	SYNONYMOUS_CODING CG32699
2R	16821509	2R_16821509_SNP [dm3] 2R_20934004_SNP [dm6]	T	G	2.814e^-4	0.851	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13678351	3R_13678351_SNP [dm3] 3R_17852629_SNP [dm6]	A	C	2.815e^-4	0.851	NON_SYNONYMOUS_CODING tinc
2R	11181117	2R_11181117_SNP [dm3] 2R_15293612_SNP [dm6]	G	A	2.825e^-4	0.851	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
3L	7431730	3L_7431730_SNP [dm3] 3L_7438630_SNP [dm6]	T	C	2.828e^-4	0.851	INTRON CG42458 & 1 other	TF binding site mE1_TFBS_inv
2R	11644354	2R_11644354_SNP [dm3] 2R_15756849_SNP [dm6]	G	C	2.831e^-4	0.851	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17415657	3R_17415657_SNP [dm3] 3R_21589935_SNP [dm6]	G	A	2.846e^-4	0.851	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	9968742	2L_9968742_SNP [dm3] 2L_9968742_SNP [dm6]	C	T	2.875e^-4	0.851	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14561339	3L_14561339_SNP [dm3] 3L_14568239_SNP [dm6]	G	A	2.875e^-4	0.851	DOWNSTREAM CG42758 INTERGENIC
3L	17740216	3L_17740216_DEL [dm3] 3L_17747116_DEL [dm6]	TA	T	2.879e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3L	17740221	3L_17740221_SNP [dm3] 3L_17747121_SNP [dm6]	G	C	2.879e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3L	11878547	3L_11878547_SNP [dm3] 3L_11885447_SNP [dm6]	A	G	2.897e^-4	0.851	INTRON CG44837
3L	8585372	3L_8585372_SNP [dm3] 3L_8592272_SNP [dm6]	T	C	2.915e^-4	0.851	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12606423	3L_12606423_INS [dm3] 3L_12613323_INS [dm6]	A	AT	2.931e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
3L	18151652	3L_18151652_SNP [dm3] 3L_18158552_SNP [dm6]	G	T	2.939e^-4	0.851	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6313367	3R_6313367_DEL [dm3] 3R_10487645_DEL [dm6]	CCCCATAATATCCACTCCGA...	C	2.956e^-4	0.851	DOWNSTREAM CR45576 INTERGENIC
2L	2406132	2L_2406132_SNP [dm3] 2L_2406132_SNP [dm6]	G	C	2.960e^-4	0.851	INTRON VGlut	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	2.973e^-4	0.851	INTERGENIC
3L	8121052	3L_8121052_SNP [dm3] 3L_8127952_SNP [dm6]	G	C	2.980e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17740236	3L_17740236_SNP [dm3] 3L_17747136_SNP [dm6]	A	T	2.993e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
X	5969662	X_5969662_SNP [dm3] X_6075629_SNP [dm6]	T	C	2.994e^-4	0.851	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC
X	18555098	X_18555098_INS [dm3] X_18661065_INS [dm6]	C	CCAC	3.001e^-4	0.851	UTR_3_PRIME fu INTRON CG6696	TF binding site mE1_TFBS_chinmo
2L	4243960	2L_4243960_SNP [dm3] 2L_4243960_SNP [dm6]	C	A	3.005e^-4	0.851	INTERGENIC
3R	14822454	3R_14822454_SNP [dm3] 3R_18996732_SNP [dm6]	T	C	3.007e^-4	0.851	INTRON gukh	TF binding site mE1_TFBS_cad
3L	12711006	3L_12711006_SNP [dm3] 3L_12717906_SNP [dm6]	C	T	3.036e^-4	0.851	INTERGENIC
3L	12711007	3L_12711007_SNP [dm3] 3L_12717907_SNP [dm6]	A	C	3.036e^-4	0.851	INTERGENIC
3R	11074919	3R_11074919_DEL [dm3] 3R_15249197_DEL [dm6]	AATACAAATA	A	3.046e^-4	0.851	UPSTREAM CG42404 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	11484375	2L_11484375_SNP [dm3] 2L_11484375_SNP [dm6]	T	C	3.048e^-4	0.851	UPSTREAM CG43355 & 1 other INTERGENIC
2R	18773919	2R_18773919_SNP [dm3] 2R_22886396_SNP [dm6]	G	A	3.070e^-4	0.851	UPSTREAM asrij & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10286824	2R_10286824_SNP [dm3] 2R_14399319_SNP [dm6]	C	G	3.090e^-4	0.851	INTERGENIC
3R	26580256	3R_26580256_DEL [dm3] 3R_30754534_DEL [dm6]	ACTTGGCTTACTTCGGTTCG...	A	3.096e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9852965	2L_9852965_SNP [dm3] 2L_9852965_SNP [dm6]	A	G	3.104e^-4	0.851	INTRON nAChRalpha6
X	6280552	X_6280552_SNP [dm3] X_6386519_SNP [dm6]	A	C	3.121e^-4	0.851	INTERGENIC
X	4087276	X_4087276_SNP [dm3] X_4193243_SNP [dm6]	T	C	3.124e^-4	0.851	INTRON Fas2	regulatory region REDfly_CRMs
3R	18489071	3R_18489071_SNP [dm3] 3R_22663349_SNP [dm6]	A	C	3.129e^-4	0.851	INTRON CG45058
X	6455420	X_6455420_SNP [dm3] X_6561387_SNP [dm6]	C	T	3.137e^-4	0.851	SYNONYMOUS_CODING CG34417
X	9227993	X_9227993_SNP [dm3] X_9333960_SNP [dm6]	C	T	3.137e^-4	0.851	INTRON CG34449
2R	9695118	2R_9695118_SNP [dm3] 2R_13807613_SNP [dm6]	G	T	3.155e^-4	0.851	INTRON stj
3L	3439389	3L_3439389_SNP [dm3] 3L_3439389_SNP [dm6]	C	T	3.156e^-4	0.851	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25278360	3R_25278360_SNP [dm3] 3R_29452638_SNP [dm6]	A	G	3.163e^-4	0.851	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
3L	20755509	3L_20755509_SNP [dm3] 3L_20762409_SNP [dm6]	C	T	3.174e^-4	0.851	INTERGENIC
2R	6804818	2R_6804818_SNP [dm3] 2R_10917313_SNP [dm6]	A	T	3.191e^-4	0.851	INTERGENIC
2R	6804820	2R_6804820_SNP [dm3] 2R_10917315_SNP [dm6]	T	G	3.191e^-4	0.851	INTERGENIC
3L	15582875	3L_15582875_SNP [dm3] 3L_15589775_SNP [dm6]	C	T	3.196e^-4	0.851	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	443304	3R_443304_DEL [dm3] 3R_4617582_DEL [dm6]	GGTCAACATGG...	G	3.202e^-4	0.851	INTRON 5-HT2A
3L	18955978	3L_18955978_SNP [dm3] 3L_18962878_SNP [dm6]	G	A	3.224e^-4	0.851	INTERGENIC
3L	15670183	3L_15670183_SNP [dm3] 3L_15677083_SNP [dm6]	C	T	3.225e^-4	0.851	INTERGENIC
2R	20327032	2R_20327032_SNP [dm3] 2R_24439509_SNP [dm6]	G	A	3.231e^-4	0.851	INTERGENIC
3L	18215065	3L_18215065_MNP [dm3] 3L_18221965_MNP [dm6]	TAG	ATT	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215070	3L_18215070_SNP [dm3] 3L_18221970_SNP [dm6]	A	T	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215071	3L_18215071_DEL [dm3] 3L_18221971_DEL [dm6]	AGAC	A	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215079	3L_18215079_SNP [dm3] 3L_18221979_SNP [dm6]	C	T	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215080	3L_18215080_SNP [dm3] 3L_18221980_SNP [dm6]	A	T	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215082	3L_18215082_SNP [dm3] 3L_18221982_SNP [dm6]	A	T	3.233e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18774825	2R_18774825_SNP [dm3] 2R_22887302_SNP [dm6]	C	A	3.235e^-4	0.851	DOWNSTREAM Gmer INTRON asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16018144	3R_16018144_SNP [dm3] 3R_20192422_SNP [dm6]	C	T	3.236e^-4	0.851	INTERGENIC
X	9128238	X_9128238_SNP [dm3] X_9234205_SNP [dm6]	C	T	3.242e^-4	0.851	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18593697	3R_18593697_INS [dm3] 3R_22767975_INS [dm6]	A	AA	3.253e^-4	0.851	UPSTREAM CG13841 DOWNSTREAM CG43091 & 1 other INTRON Usp12-46 & 1 other
3R	14176682	3R_14176682_SNP [dm3] 3R_18350960_SNP [dm6]	G	C	3.254e^-4	0.851	INTRON CG15803
2R	15030643	2R_15030643_SNP [dm3] 2R_19143138_SNP [dm6]	G	A	3.266e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	19015279	X_19015279_SNP [dm3] X_19121246_SNP [dm6]	G	T	3.266e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	4464619	2L_4464619_SNP [dm3] 2L_4464619_SNP [dm6]	T	C	3.272e^-4	0.851	SYNONYMOUS_CODING CG15436 UPSTREAM CG17840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	17930010	3L_17930010_SNP [dm3] 3L_17936910_SNP [dm6]	G	A	3.298e^-4	0.851	INTRON CG43174
2L	4124568	2L_4124568_SNP [dm3] 2L_4124568_SNP [dm6]	G	T	3.311e^-4	0.851	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	17705905	3L_17705905_SNP [dm3] 3L_17712805_SNP [dm6]	T	G	3.328e^-4	0.851	INTRON Ccn
X	3236832	X_3236832_SNP [dm3] X_3342799_SNP [dm6]	T	A	3.343e^-4	0.851	UTR_3_PRIME dnc INTRON CR44886
3L	2920465	3L_2920465_INS [dm3] 3L_2920465_INS [dm6]	C	CTATGTATTTGTATTATTC...	3.352e^-4	0.851	INTRON Shab
3L	2920472	3L_2920472_SNP [dm3] 3L_2920472_SNP [dm6]	A	G	3.352e^-4	0.851	INTRON Shab
2R	7085839	2R_7085839_DEL [dm3] 2R_11198334_DEL [dm6]	TTAATTAAT	T	3.353e^-4	0.851	UTR_5_PRIME shn INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	3.355e^-4	0.851	INTRON MYPT-75D
2R	15714047	2R_15714047_SNP [dm3] 2R_19826542_SNP [dm6]	G	T	3.360e^-4	0.851	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4203646	2R_4203646_SNP [dm3] 2R_8316141_SNP [dm6]	C	G	3.373e^-4	0.851	INTERGENIC
2R	16122919	2R_16122919_SNP [dm3] 2R_20235414_SNP [dm6]	C	G	3.377e^-4	0.851	UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044 & 1 other INTERGENIC
2L	6516054	2L_6516054_SNP [dm3] 2L_6516054_SNP [dm6]	T	A	3.377e^-4	0.851	INTRON CG31637
3L	2588314	3L_2588314_SNP [dm3] 3L_2588314_SNP [dm6]	C	T	3.379e^-4	0.851	SYNONYMOUS_CODING RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18355687	2R_18355687_SNP [dm3] 2R_22468182_SNP [dm6]	G	T	3.382e^-4	0.851	INTRON CG10384	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12448791	2L_12448791_SNP [dm3] 2L_12448791_SNP [dm6]	T	C	3.386e^-4	0.851	UPSTREAM CG5421 INTRON Oatp33Eb
3L	17255870	3L_17255870_SNP [dm3] 3L_17262770_SNP [dm6]	C	A	3.396e^-4	0.851	INTRON CR43870
3L	17740457	3L_17740457_SNP [dm3] 3L_17747357_SNP [dm6]	G	C	3.406e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3L	15762547	3L_15762547_SNP [dm3] 3L_15769447_SNP [dm6]	C	A	3.406e^-4	0.851	INTERGENIC
3L	8531153	3L_8531153_SNP [dm3] 3L_8538053_SNP [dm6]	C	T	3.406e^-4	0.851	DOWNSTREAM ergic53 INTERGENIC
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	3.417e^-4	0.851	INTERGENIC
3L	10017954	3L_10017954_INS [dm3] 3L_10024854_INS [dm6]	C	CCAC	3.423e^-4	0.851	INTRON dpr6
3L	18116410	3L_18116410_SNP [dm3] 3L_18123310_SNP [dm6]	C	T	3.425e^-4	0.851	INTERGENIC
3L	14178347	3L_14178347_SNP [dm3] 3L_14185247_SNP [dm6]	T	G	3.443e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14381348	2L_14381348_SNP [dm3] 2L_14381348_SNP [dm6]	G	A	3.454e^-4	0.851	UPSTREAM ppk INTERGENIC
2L	14381357	2L_14381357_SNP [dm3] 2L_14381357_SNP [dm6]	A	T	3.454e^-4	0.851	UPSTREAM ppk INTERGENIC
X	12605485	X_12605485_SNP [dm3] X_12711452_SNP [dm6]	A	T	3.454e^-4	0.851	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
X	12605491	X_12605491_SNP [dm3] X_12711458_SNP [dm6]	C	T	3.454e^-4	0.851	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	3.455e^-4	0.851	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	7270469	3L_7270469_SNP [dm3] 3L_7277369_SNP [dm6]	T	C	3.459e^-4	0.851	INTRON unc-13-4A
3R	11281739	3R_11281739_INS [dm3] 3R_15456017_INS [dm6]	A	ATTGCCCCATGTTTCGC...	3.459e^-4	0.851	INTRON AdamTS-A
3R	11281741	3R_11281741_SNP [dm3] 3R_15456019_SNP [dm6]	A	G	3.459e^-4	0.851	INTRON AdamTS-A
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	3.462e^-4	0.851	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	3.462e^-4	0.851	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2617337	3L_2617337_DEL [dm3] 3L_2617337_DEL [dm6]	AGCTTTCAGCTTCA...	A	3.473e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7462995	2L_7462995_SNP [dm3] 2L_7462995_SNP [dm6]	G	T	3.477e^-4	0.851	UPSTREAM Gr28b INTERGENIC
2L	4465330	2L_4465330_SNP [dm3] 2L_4465330_SNP [dm6]	C	A	3.492e^-4	0.851	DOWNSTREAM CG15436 INTRON CG17840	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	4465337	2L_4465337_SNP [dm3] 2L_4465337_SNP [dm6]	C	A	3.492e^-4	0.851	DOWNSTREAM CG15436 INTRON CG17840	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	4465348	2L_4465348_SNP [dm3] 2L_4465348_SNP [dm6]	T	C	3.492e^-4	0.851	DOWNSTREAM CG15436 INTRON CG17840	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_Ubx
X	17847785	X_17847785_SNP [dm3] X_17953752_SNP [dm6]	T	A	3.495e^-4	0.851	INTRON Sh
X	15267076	X_15267076_SNP [dm3] X_15373043_SNP [dm6]	G	A	3.513e^-4	0.851	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14039788	3R_14039788_SNP [dm3] 3R_18214066_SNP [dm6]	T	C	3.519e^-4	0.851	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12441797	X_12441797_DEL [dm3] X_12547764_DEL [dm6]	TTC	T	3.549e^-4	0.851	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21232198	X_21232198_SNP [dm3] X_21361171_SNP [dm6]	C	T	3.571e^-4	0.851	UTR_3_PRIME Sep1
3L	18574941	3L_18574941_DEL [dm3] 3L_18581841_DEL [dm6]	CACTAGCATT	C	3.571e^-4	0.851	INTERGENIC
2R	18533098	2R_18533098_SNP [dm3] 2R_22645593_SNP [dm6]	T	A	3.603e^-4	0.851	INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2921037	3L_2921037_SNP [dm3] 3L_2921037_SNP [dm6]	G	A	3.603e^-4	0.851	INTRON Shab
3L	4141441	3L_4141441_SNP [dm3] 3L_4141441_SNP [dm6]	T	G	3.604e^-4	0.851	UPSTREAM Akh & 1 other DOWNSTREAM Ras64B INTERGENIC
3L	8809606	3L_8809606_SNP [dm3] 3L_8816506_SNP [dm6]	C	T	3.607e^-4	0.851	INTERGENIC
3L	12606207	3L_12606207_SNP [dm3] 3L_12613107_SNP [dm6]	T	A	3.635e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
3L	12606208	3L_12606208_SNP [dm3] 3L_12613108_SNP [dm6]	T	A	3.635e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
3L	20819411	3L_20819411_SNP [dm3] 3L_20826311_SNP [dm6]	T	A	3.641e^-4	0.851	INTRON Pka-R1
3L	5345943	3L_5345943_SNP [dm3] 3L_5352843_SNP [dm6]	C	A	3.644e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345959	3L_5345959_SNP [dm3] 3L_5352859_SNP [dm6]	A	G	3.644e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345995	3L_5345995_SNP [dm3] 3L_5352895_SNP [dm6]	A	T	3.644e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5346005	3L_5346005_SNP [dm3] 3L_5352905_SNP [dm6]	A	G	3.644e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8439875	2R_8439875_DEL [dm3] 2R_12552370_DEL [dm6]	CCC	A	3.644e^-4	0.851	INTRON fra
2L	20283362	2L_20283362_SNP [dm3] 2L_20283362_SNP [dm6]	G	A	3.669e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12606182	3L_12606182_SNP [dm3] 3L_12613082_SNP [dm6]	A	G	3.671e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
3L	4119382	3L_4119382_SNP [dm3] 3L_4119382_SNP [dm6]	G	A	3.678e^-4	0.851	INTRON Chd64
3R	6206300	3R_6206300_SNP [dm3] 3R_10380578_SNP [dm6]	A	G	3.691e^-4	0.851	INTERGENIC
2R	13210767	2R_13210767_SNP [dm3] 2R_17323262_SNP [dm6]	T	G	3.701e^-4	0.851	INTRON mbl
2L	16414962	2L_16414962_SNP [dm3] 2L_16414962_SNP [dm6]	T	C	3.708e^-4	0.851	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14966314	2R_14966314_SNP [dm3] 2R_19078809_SNP [dm6]	C	T	3.728e^-4	0.851	INTRON 5-HT1A
2R	11911394	2R_11911394_SNP [dm3] 2R_16023889_SNP [dm6]	G	T	3.729e^-4	0.851	DOWNSTREAM casp INTRON CG8399
3L	13486766	3L_13486766_SNP [dm3] 3L_13493666_SNP [dm6]	T	A	3.734e^-4	0.851	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6402834	X_6402834_SNP [dm3] X_6508801_SNP [dm6]	C	T	3.735e^-4	0.851	INTRON CG42340
3L	15486024	3L_15486024_SNP [dm3] 3L_15492924_SNP [dm6]	G	C	3.742e^-4	0.851	DOWNSTREAM CG12355 INTERGENIC
2R	18761962	2R_18761962_INS [dm3] 2R_22874439_INS [dm6]	G	TT	3.754e^-4	0.851	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18761970	2R_18761970_SNP [dm3] 2R_22874447_SNP [dm6]	C	T	3.754e^-4	0.851	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11911376	2R_11911376_SNP [dm3] 2R_16023871_SNP [dm6]	A	G	3.769e^-4	0.851	DOWNSTREAM casp INTRON CG8399
X	5532124	X_5532124_DEL [dm3] X_5638091_DEL [dm6]	ATTGTA	A	3.815e^-4	0.851	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9723003	3R_9723003_SNP [dm3] 3R_13897281_SNP [dm6]	C	T	3.818e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6972251	2L_6972251_DEL [dm3] 2L_6972251_DEL [dm6]	CTGGGAGTGC	C	3.819e^-4	0.851	UPSTREAM snRNP-U1-70K DOWNSTREAM uif EXON CR43142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	14340967	2L_14340967_SNP [dm3] 2L_14340967_SNP [dm6]	C	A	3.839e^-4	0.851	DOWNSTREAM CG15286 INTRON CG33090
2L	6226525	2L_6226525_SNP [dm3] 2L_6226525_SNP [dm6]	T	C	3.842e^-4	0.851	SYNONYMOUS_CODING Ugt37b1
2R	3495925	2R_3495925_SNP [dm3] 2R_7608420_SNP [dm6]	A	T	3.847e^-4	0.851	SPLICE_SITE_DONOR CG1358 INTRON CG1358
3L	2662470	3L_2662470_SNP [dm3] 3L_2662470_SNP [dm6]	C	T	3.847e^-4	0.851	SYNONYMOUS_CODING CG33234 DOWNSTREAM CG33233 INTRON Fife
3L	477616	3L_477616_SNP [dm3] 3L_477616_SNP [dm6]	T	C	3.847e^-4	0.851	INTRON klar
3L	477617	3L_477617_SNP [dm3] 3L_477617_SNP [dm6]	G	A	3.847e^-4	0.851	INTRON klar
3L	6600485	3L_6600485_SNP [dm3] 3L_6607385_SNP [dm6]	A	G	3.847e^-4	0.851	NON_SYNONYMOUS_CODING CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9705971	3R_9705971_SNP [dm3] 3R_13880249_SNP [dm6]	G	A	3.847e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20557178	X_20557178_DEL [dm3] X_20686151_DEL [dm6]	GCACTGTAGCTTAAG...	G	3.847e^-4	0.851	UPSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20558809	X_20558809_SNP [dm3] X_20687782_SNP [dm6]	A	T	3.847e^-4	0.851	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	17243196	3L_17243196_SNP [dm3] 3L_17250096_SNP [dm6]	T	G	3.848e^-4	0.851	INTRON CR43870
X	7258634	X_7258634_SNP [dm3] X_7364601_SNP [dm6]	G	T	3.851e^-4	0.851	INTRON CG1677 & 1 other
2L	5645775	2L_5645775_SNP [dm3] 2L_5645775_SNP [dm6]	G	A	3.867e^-4	0.851	INTRON CG31646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17255875	3L_17255875_SNP [dm3] 3L_17262775_SNP [dm6]	A	G	3.868e^-4	0.851	INTRON CR43870
3L	15718176	3L_15718176_SNP [dm3] 3L_15725076_SNP [dm6]	C	T	3.874e^-4	0.851	INTRON comm
3R	1321175	3R_1321175_SNP [dm3] 3R_5495453_SNP [dm6]	C	G	3.882e^-4	0.851	INTRON CG31547
3R	1329126	3R_1329126_SNP [dm3] 3R_5503404_SNP [dm6]	C	T	3.882e^-4	0.851	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1339342	3R_1339342_SNP [dm3] 3R_5513620_SNP [dm6]	A	T	3.882e^-4	0.851	INTRON Nmdar1
3R	1339450	3R_1339450_SNP [dm3] 3R_5513728_SNP [dm6]	G	A	3.882e^-4	0.851	INTRON Nmdar1
3R	1340113	3R_1340113_SNP [dm3] 3R_5514391_SNP [dm6]	G	C	3.882e^-4	0.851	INTRON Nmdar1
3R	1340675	3R_1340675_SNP [dm3] 3R_5514953_SNP [dm6]	T	C	3.882e^-4	0.851	INTRON Nmdar1
3R	1454528	3R_1454528_SNP [dm3] 3R_5628806_SNP [dm6]	A	G	3.882e^-4	0.851	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	14560742	3L_14560742_SNP [dm3] 3L_14567642_SNP [dm6]	C	G	3.894e^-4	0.851	UTR_5_PRIME CG42758
3L	2617286	3L_2617286_SNP [dm3] 3L_2617286_SNP [dm6]	C	T	3.905e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2617288	3L_2617288_SNP [dm3] 3L_2617288_SNP [dm6]	T	A	3.905e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2617291	3L_2617291_SNP [dm3] 3L_2617291_SNP [dm6]	G	T	3.905e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2617293	3L_2617293_SNP [dm3] 3L_2617293_SNP [dm6]	G	C	3.905e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2617297	3L_2617297_DEL [dm3] 3L_2617297_DEL [dm6]	GTTATAAATGAATTAAAGGT...	CC	3.905e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3145251	3L_3145251_SNP [dm3] 3L_3145251_SNP [dm6]	T	C	3.910e^-4	0.851	SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14324815	3L_14324815_SNP [dm3] 3L_14331715_SNP [dm6]	A	G	3.923e^-4	0.851	INTRON fz
3L	14324820	3L_14324820_SNP [dm3] 3L_14331720_SNP [dm6]	A	T	3.923e^-4	0.851	INTRON fz
3R	18016133	3R_18016133_SNP [dm3] 3R_22190411_SNP [dm6]	C	G	3.938e^-4	0.851	INTRON SKIP
2R	18791234	2R_18791234_SNP [dm3] 2R_22903711_SNP [dm6]	A	G	3.942e^-4	0.851	INTRON nahoda
3R	10249290	3R_10249290_SNP [dm3] 3R_14423568_SNP [dm6]	C	T	3.959e^-4	0.851	INTRON cv-c
2R	19629959	2R_19629959_SNP [dm3] 2R_23742436_SNP [dm6]	C	A	3.979e^-4	0.851	INTRON egl
X	7453023	X_7453023_SNP [dm3] X_7558990_SNP [dm6]	A	T	3.990e^-4	0.851	INTERGENIC
3L	2920501	3L_2920501_SNP [dm3] 3L_2920501_SNP [dm6]	G	A	4.001e^-4	0.851	INTRON Shab
2R	12107277	2R_12107277_SNP [dm3] 2R_16219772_SNP [dm6]	C	T	4.014e^-4	0.851	UPSTREAM tRNA:CR30240 & 1 other DOWNSTREAM tRNA:CR30239 INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4472219	2R_4472219_SNP [dm3] 2R_8584714_SNP [dm6]	G	C	4.017e^-4	0.851	UTR_5_PRIME CG42326
2L	3461929	2L_3461929_SNP [dm3] 2L_3461929_SNP [dm6]	G	A	4.020e^-4	0.851	UTR_5_PRIME CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad
3L	828958	3L_828958_SNP [dm3] 3L_828958_SNP [dm6]	C	T	4.022e^-4	0.851	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me5.8S-G74 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4524581	2R_4524581_SNP [dm3] 2R_8637076_SNP [dm6]	T	G	4.031e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15373951	3R_15373951_DEL [dm3] 3R_19548229_DEL [dm6]	TCCATTTCT	T	4.056e^-4	0.851	INTRON Dys
3L	3446460	3L_3446460_SNP [dm3] 3L_3446460_SNP [dm6]	C	T	4.058e^-4	0.851	INTRON eIF5B
3R	18795593	3R_18795593_SNP [dm3] 3R_22969871_SNP [dm6]	T	A	4.059e^-4	0.851	INTERGENIC
3R	13561530	3R_13561530_SNP [dm3] 3R_17735808_SNP [dm6]	G	T	4.063e^-4	0.851	UPSTREAM TyrRII INTERGENIC
2L	16489457	2L_16489457_SNP [dm3] 2L_16489457_SNP [dm6]	G	C	4.063e^-4	0.851	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8120842	3L_8120842_SNP [dm3] 3L_8127742_SNP [dm6]	G	A	4.065e^-4	0.851	START_GAINED Uba2 UTR_5_PRIME Uba2 UPSTREAM CdsA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	3211542	2L_3211542_SNP [dm3] 2L_3211542_SNP [dm6]	C	T	4.069e^-4	0.851	DOWNSTREAM CR45336 INTERGENIC
2L	7401515	2L_7401515_SNP [dm3] 2L_7401515_SNP [dm6]	T	A	4.086e^-4	0.851	INTRON CG5171
3L	7773402	3L_7773402_SNP [dm3] 3L_7780302_SNP [dm6]	G	A	4.088e^-4	0.851	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
2R	13648581	2R_13648581_SNP [dm3] 2R_17761076_SNP [dm6]	A	G	4.089e^-4	0.851	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8120918	3L_8120918_SNP [dm3] 3L_8127818_SNP [dm6]	A	T	4.110e^-4	0.851	START_GAINED CdsA UTR_5_PRIME Uba2 & 1 other UPSTREAM CdsA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	8120920	3L_8120920_SNP [dm3] 3L_8127820_SNP [dm6]	C	G	4.110e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	8121034	3L_8121034_SNP [dm3] 3L_8127934_SNP [dm6]	G	A	4.110e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	8121105	3L_8121105_SNP [dm3] 3L_8128005_SNP [dm6]	A	C	4.110e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17393615	3R_17393615_SNP [dm3] 3R_21567893_SNP [dm6]	A	T	4.112e^-4	0.851	INTRON CG15498
3L	6654493	3L_6654493_SNP [dm3] 3L_6661393_SNP [dm6]	C	T	4.124e^-4	0.851	INTERGENIC
X	5375073	X_5375073_SNP [dm3] X_5481040_SNP [dm6]	T	A	4.125e^-4	0.851	INTRON SPR
2R	15321159	2R_15321159_SNP [dm3] 2R_19433654_SNP [dm6]	A	C	4.141e^-4	0.851	INTRON Fak	TF binding site mE1_TFBS_inv
2R	6161552	2R_6161552_SNP [dm3] 2R_10274047_SNP [dm6]	A	T	4.163e^-4	0.851	INTRON CAP
2R	16794573	2R_16794573_SNP [dm3] 2R_20907068_SNP [dm6]	G	A	4.167e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18774612	2R_18774612_SNP [dm3] 2R_22887089_SNP [dm6]	C	T	4.169e^-4	0.851	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17393625	3R_17393625_SNP [dm3] 3R_21567903_SNP [dm6]	A	T	4.169e^-4	0.851	INTRON CG15498
2L	12580486	2L_12580486_SNP [dm3] 2L_12580486_SNP [dm6]	A	G	4.170e^-4	0.851	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	5536652	2L_5536652_SNP [dm3] 2L_5536652_SNP [dm6]	C	A	4.172e^-4	0.851	SYNONYMOUS_CODING tomb DOWNSTREAM CG14015 & 1 other	TF binding site mE1_TFBS_chinmo
3R	23781609	3R_23781609_SNP [dm3] 3R_27955887_SNP [dm6]	G	A	4.174e^-4	0.851	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5670502	2L_5670502_SNP [dm3] 2L_5670502_SNP [dm6]	T	C	4.180e^-4	0.851	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18016418	3R_18016418_SNP [dm3] 3R_22190696_SNP [dm6]	A	T	4.196e^-4	0.851	INTRON SKIP
2L	11484388	2L_11484388_SNP [dm3] 2L_11484388_SNP [dm6]	C	T	4.205e^-4	0.851	UPSTREAM CG43355 & 1 other INTERGENIC
X	1035686	X_1035686_SNP [dm3] X_1141653_SNP [dm6]	C	T	4.236e^-4	0.851	INTERGENIC
3R	26580162	3R_26580162_SNP [dm3] 3R_30754440_SNP [dm6]	G	C	4.238e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4938684	3L_4938684_SNP [dm3] 3L_4938684_SNP [dm6]	C	T	4.293e^-4	0.851	UTR_3_PRIME Con
2R	9695158	2R_9695158_SNP [dm3] 2R_13807653_SNP [dm6]	A	T	4.304e^-4	0.851	INTRON stj
2R	9695193	2R_9695193_SNP [dm3] 2R_13807688_SNP [dm6]	T	C	4.304e^-4	0.851	INTRON stj
2R	10286809	2R_10286809_SNP [dm3] 2R_14399304_SNP [dm6]	A	G	4.329e^-4	0.851	INTERGENIC
2R	10286811	2R_10286811_SNP [dm3] 2R_14399306_SNP [dm6]	T	G	4.329e^-4	0.851	INTERGENIC
2R	4508454	2R_4508454_SNP [dm3] 2R_8620949_SNP [dm6]	G	A	4.361e^-4	0.851	NON_SYNONYMOUS_CODING Cirl DOWNSTREAM Cirl	TF binding site mE1_TFBS_cad
2L	8747277	2L_8747277_SNP [dm3] 2L_8747277_SNP [dm6]	G	C	4.374e^-4	0.851	INTERGENIC
2R	3918628	2R_3918628_SNP [dm3] 2R_8031123_SNP [dm6]	T	C	4.381e^-4	0.851	UPSTREAM Optix INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	7070095	2R_7070095_SNP [dm3] 2R_11182590_SNP [dm6]	A	G	4.382e^-4	0.851	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10239963	3L_10239963_SNP [dm3] 3L_10246863_SNP [dm6]	A	T	4.388e^-4	0.851	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	19477988	X_19477988_SNP [dm3] X_19583955_SNP [dm6]	T	A	4.392e^-4	0.851	INTRON CG14204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19477994	X_19477994_SNP [dm3] X_19583961_SNP [dm6]	A	G	4.392e^-4	0.851	INTRON CG14204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7223191	3L_7223191_SNP [dm3] 3L_7230091_SNP [dm6]	G	C	4.433e^-4	0.851	INTERGENIC
3L	6670194	3L_6670194_SNP [dm3] 3L_6677094_SNP [dm6]	T	C	4.436e^-4	0.851	INTERGENIC
3R	1352108	3R_1352108_DEL [dm3] 3R_5526386_DEL [dm6]	CACATATGTATGC...	C	4.438e^-4	0.851	INTRON Itp-r83A
3R	1429396	3R_1429396_SNP [dm3] 3R_5603674_SNP [dm6]	C	T	4.438e^-4	0.851	SYNONYMOUS_CODING asl DOWNSTREAM CG1427
2L	19951553	2L_19951553_DEL [dm3] 2L_19951553_DEL [dm6]	TA	G	4.447e^-4	0.851	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13001797	3L_13001797_SNP [dm3] 3L_13008697_SNP [dm6]	C	G	4.472e^-4	0.851	NON_SYNONYMOUS_CODING CG14117 DOWNSTREAM CG11263 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	13699553	2L_13699553_SNP [dm3] 2L_13699553_SNP [dm6]	A	G	4.474e^-4	0.851	INTRON CG31814
3R	13466601	3R_13466601_SNP [dm3] 3R_17640879_SNP [dm6]	T	A	4.486e^-4	0.851	INTRON CG43175
2R	17006653	2R_17006653_SNP [dm3] 2R_21119148_SNP [dm6]	C	G	4.487e^-4	0.851	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9273151	X_9273151_SNP [dm3] X_9379118_SNP [dm6]	G	C	4.518e^-4	0.851	INTRON mgl
X	9273193	X_9273193_SNP [dm3] X_9379160_SNP [dm6]	T	A	4.518e^-4	0.851	INTRON mgl
X	20285744	X_20285744_SNP [dm3] X_20414717_SNP [dm6]	C	T	4.534e^-4	0.851	UPSTREAM CG15458 INTERGENIC	regulatory region REDfly_CRMs
3L	10189582	3L_10189582_SNP [dm3] 3L_10196482_SNP [dm6]	G	T	4.547e^-4	0.851	INTRON ect	TF binding site mE1_TFBS_chinmo
3L	3814085	3L_3814085_SNP [dm3] 3L_3814085_SNP [dm6]	G	T	4.566e^-4	0.851	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	3814115	3L_3814115_SNP [dm3] 3L_3814115_SNP [dm6]	T	C	4.566e^-4	0.851	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	9467085	2R_9467085_SNP [dm3] 2R_13579580_SNP [dm6]	T	C	4.569e^-4	0.851	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4349985	2L_4349985_SNP [dm3] 2L_4349985_SNP [dm6]	C	G	4.575e^-4	0.851	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	10554609	2L_10554609_DEL [dm3] 2L_10554609_DEL [dm6]	AATCCAATGCAATGCAAA...	A	4.614e^-4	0.851	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	5345939	3L_5345939_SNP [dm3] 3L_5352839_SNP [dm6]	C	A	4.617e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1197432	3L_1197432_SNP [dm3] 3L_1197432_SNP [dm6]	C	T	4.625e^-4	0.851	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8326044	2L_8326044_SNP [dm3] 2L_8326044_SNP [dm6]	C	T	4.626e^-4	0.851	UPSTREAM CG7781 INTERGENIC
X	12756123	X_12756123_INS [dm3] X_12862090_INS [dm6]	A	AGAAAA	4.630e^-4	0.851	INTRON Pde9
3L	17710078	3L_17710078_SNP [dm3] 3L_17716978_SNP [dm6]	G	C	4.662e^-4	0.851	INTRON Ccn
3L	17710080	3L_17710080_SNP [dm3] 3L_17716980_SNP [dm6]	C	G	4.662e^-4	0.851	INTRON Ccn
2L	4243344	2L_4243344_SNP [dm3] 2L_4243344_SNP [dm6]	C	G	4.681e^-4	0.851	DOWNSTREAM CR44058 INTERGENIC
2R	6174275	2R_6174275_SNP [dm3] 2R_10286770_SNP [dm6]	C	T	4.702e^-4	0.851	DOWNSTREAM CAP INTRON CAP
X	14073411	X_14073411_SNP [dm3] X_14179378_SNP [dm6]	A	T	4.728e^-4	0.851	DOWNSTREAM CG11581 INTERGENIC
2L	17417695	2L_17417695_DEL [dm3] 2L_17417695_DEL [dm6]	AA	A	4.734e^-4	0.851	INTRON Dif
3L	22499814	3L_22499814_SNP [dm3] 3L_22506714_SNP [dm6]	T	C	4.740e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10841392	2R_10841392_SNP [dm3] 2R_14953887_SNP [dm6]	G	A	4.768e^-4	0.851	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3495870	2R_3495870_DEL [dm3] 2R_7608365_DEL [dm6]	TATTAGATTATCGAC...	T	4.768e^-4	0.851	INTRON CG1358
2R	3495886	2R_3495886_SNP [dm3] 2R_7608381_SNP [dm6]	A	G	4.768e^-4	0.851	INTRON CG1358
3R	10249137	3R_10249137_SNP [dm3] 3R_14423415_SNP [dm6]	A	C	4.779e^-4	0.851	UPSTREAM CR44176 INTRON cv-c
3L	12605508	3L_12605508_SNP [dm3] 3L_12612408_SNP [dm6]	T	C	4.790e^-4	0.851	INTRON caup
2L	9847564	2L_9847564_SNP [dm3] 2L_9847564_SNP [dm6]	T	C	4.793e^-4	0.851	UPSTREAM CR43766 INTRON nAChRalpha6
3R	24030798	3R_24030798_SNP [dm3] 3R_28205076_SNP [dm6]	G	T	4.799e^-4	0.851	INTRON CG34354
2R	4524616	2R_4524616_SNP [dm3] 2R_8637111_SNP [dm6]	A	G	4.802e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18994991	3R_18994991_SNP [dm3] 3R_23169269_SNP [dm6]	T	C	4.834e^-4	0.851	INTRON Irk1
2L	11172429	2L_11172429_SNP [dm3] 2L_11172429_SNP [dm6]	T	G	4.836e^-4	0.851	UPSTREAM Vm32E INTRON Ca-beta
X	10620163	X_10620163_DEL [dm3] X_10726130_DEL [dm6]	AA	A	4.854e^-4	0.851	INTRON CG32676
2L	2256564	2L_2256564_SNP [dm3] 2L_2256564_SNP [dm6]	T	C	4.855e^-4	0.851	INTERGENIC
2L	2256573	2L_2256573_SNP [dm3] 2L_2256573_SNP [dm6]	T	A	4.855e^-4	0.851	INTERGENIC
2L	2256575	2L_2256575_SNP [dm3] 2L_2256575_SNP [dm6]	T	A	4.855e^-4	0.851	INTERGENIC
2L	2256582	2L_2256582_SNP [dm3] 2L_2256582_SNP [dm6]	G	A	4.855e^-4	0.851	INTERGENIC
3L	3759134	3L_3759134_INS [dm3] 3L_3759134_INS [dm6]	T	TT	4.858e^-4	0.851	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	16082151	2L_16082151_SNP [dm3] 2L_16082151_SNP [dm6]	G	A	4.861e^-4	0.851	DOWNSTREAM beat-Ia INTERGENIC
2R	7087045	2R_7087045_SNP [dm3] 2R_11199540_SNP [dm6]	T	G	4.865e^-4	0.851	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	18357276	2R_18357276_SNP [dm3] 2R_22469771_SNP [dm6]	A	G	4.865e^-4	0.851	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5345956	3L_5345956_SNP [dm3] 3L_5352856_SNP [dm6]	C	G	4.881e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345978	3L_5345978_SNP [dm3] 3L_5352878_SNP [dm6]	C	T	4.881e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	21122998	X_21122998_SNP [dm3] X_21251971_SNP [dm6]	A	G	4.907e^-4	0.851	UPSTREAM CG1722 INTRON CG32521
2R	7085079	2R_7085079_DEL [dm3] 2R_11197574_DEL [dm6]	ACGGAATAATGTAAGCGGAA...	A	4.940e^-4	0.851	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17040374	3L_17040374_SNP [dm3] 3L_17047274_SNP [dm6]	C	G	4.949e^-4	0.851	INTRON TpnC73F
2L	4351070	2L_4351070_SNP [dm3] 2L_4351070_SNP [dm6]	C	T	4.956e^-4	0.851	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9467675	X_9467675_SNP [dm3] X_9573642_SNP [dm6]	A	G	4.963e^-4	0.851	SYNONYMOUS_CODING CG32699
2R	20198183	2R_20198183_SNP [dm3] 2R_24310660_SNP [dm6]	T	A	4.976e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3L	17527649	3L_17527649_SNP [dm3] 3L_17534549_SNP [dm6]	G	A	4.977e^-4	0.851	NON_SYNONYMOUS_CODING Nedd4 INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6174260	2R_6174260_SNP [dm3] 2R_10286755_SNP [dm6]	A	T	4.994e^-4	0.851	DOWNSTREAM CAP INTRON CAP
X	11656542	X_11656542_SNP [dm3] X_11762509_SNP [dm6]	C	A	5.002e^-4	0.851	DOWNSTREAM CG9360 INTRON m
3L	12600804	3L_12600804_SNP [dm3] 3L_12607704_SNP [dm6]	A	T	5.023e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600805	3L_12600805_SNP [dm3] 3L_12607705_SNP [dm6]	A	G	5.023e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3437963	3L_3437963_SNP [dm3] 3L_3437963_SNP [dm6]	C	T	5.025e^-4	0.851	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16093251	2R_16093251_SNP [dm3] 2R_20205746_SNP [dm6]	G	A	5.043e^-4	0.851	INTERGENIC
2R	16093261	2R_16093261_SNP [dm3] 2R_20205756_SNP [dm6]	G	A	5.043e^-4	0.851	INTERGENIC
2R	16093268	2R_16093268_SNP [dm3] 2R_20205763_SNP [dm6]	G	T	5.043e^-4	0.851	INTERGENIC
2R	16093269	2R_16093269_SNP [dm3] 2R_20205764_SNP [dm6]	C	A	5.043e^-4	0.851	INTERGENIC
2L	6904698	2L_6904698_SNP [dm3] 2L_6904698_SNP [dm6]	G	A	5.051e^-4	0.851	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6633195	3L_6633195_SNP [dm3] 3L_6640095_SNP [dm6]	T	C	5.056e^-4	0.851	UPSTREAM CR45238 INTERGENIC
X	16155306	X_16155306_SNP [dm3] X_16261273_SNP [dm6]	T	C	5.059e^-4	0.851	INTERGENIC
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	5.078e^-4	0.851	DOWNSTREAM CG42578 INTERGENIC
2L	13029990	2L_13029990_SNP [dm3] 2L_13029990_SNP [dm6]	C	T	5.081e^-4	0.851	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18857160	3L_18857160_SNP [dm3] 3L_18864060_SNP [dm6]	C	G	5.084e^-4	0.851	UPSTREAM CG6865 INTRON CG6865
2R	19930733	2R_19930733_SNP [dm3] 2R_24043210_SNP [dm6]	A	G	5.089e^-4	0.851	SYNONYMOUS_CODING IntS1
3R	24415816	3R_24415816_SNP [dm3] 3R_28590094_SNP [dm6]	G	A	5.093e^-4	0.851	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	5939453	3L_5939453_DEL [dm3] 3L_5946353_DEL [dm6]	GG	G	5.104e^-4	0.851	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	5423684	2L_5423684_SNP [dm3] 2L_5423684_SNP [dm6]	T	G	5.105e^-4	0.851	INTERGENIC
2L	5423891	2L_5423891_SNP [dm3] 2L_5423891_SNP [dm6]	C	T	5.105e^-4	0.851	INTERGENIC
2L	11490570	2L_11490570_SNP [dm3] 2L_11490570_SNP [dm6]	A	T	5.118e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24921762	3R_24921762_SNP [dm3] 3R_29096040_SNP [dm6]	G	T	5.143e^-4	0.851	INTRON CG11873 EXON CR45030
3R	19563453	3R_19563453_SNP [dm3] 3R_23737731_SNP [dm6]	G	T	5.144e^-4	0.851	INTRON Hmgcr
3R	19563457	3R_19563457_SNP [dm3] 3R_23737735_SNP [dm6]	G	T	5.144e^-4	0.851	INTRON Hmgcr
3R	16863211	3R_16863211_SNP [dm3] 3R_21037489_SNP [dm6]	T	A	5.148e^-4	0.851	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	16863212	3R_16863212_SNP [dm3] 3R_21037490_SNP [dm6]	T	C	5.148e^-4	0.851	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	16863228	3R_16863228_SNP [dm3] 3R_21037506_SNP [dm6]	C	T	5.148e^-4	0.851	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2R	18774581	2R_18774581_SNP [dm3] 2R_22887058_SNP [dm6]	T	G	5.154e^-4	0.851	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14930474	3L_14930474_SNP [dm3] 3L_14937374_SNP [dm6]	C	T	5.154e^-4	0.851	INTRON DCX-EMAP
2L	4245731	2L_4245731_SNP [dm3] 2L_4245731_SNP [dm6]	T	C	5.157e^-4	0.851	DOWNSTREAM CR44059 INTERGENIC
X	3236865	X_3236865_SNP [dm3] X_3342832_SNP [dm6]	A	T	5.160e^-4	0.851	UTR_3_PRIME dnc INTRON CR44886
2R	8649145	2R_8649145_SNP [dm3] 2R_12761640_SNP [dm6]	C	T	5.170e^-4	0.851	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15530197	3R_15530197_SNP [dm3] 3R_19704475_SNP [dm6]	T	C	5.189e^-4	0.851	INTERGENIC
2R	8350702	2R_8350702_SNP [dm3] 2R_12463197_SNP [dm6]	T	A	5.203e^-4	0.851	INTRON Lac
3R	12987985	3R_12987985_SNP [dm3] 3R_17162263_SNP [dm6]	A	G	5.206e^-4	0.851	INTRON Mur89F
3R	18523538	3R_18523538_SNP [dm3] 3R_22697816_SNP [dm6]	C	A	5.211e^-4	0.851	NON_SYNONYMOUS_CODING cd UPSTREAM Cyp6d4
3L	8121032	3L_8121032_SNP [dm3] 3L_8127932_SNP [dm6]	C	G	5.214e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20326820	2R_20326820_SNP [dm3] 2R_24439297_SNP [dm6]	C	G	5.216e^-4	0.851	INTERGENIC
3L	19105896	3L_19105896_SNP [dm3] 3L_19112796_SNP [dm6]	G	A	5.218e^-4	0.851	INTRON CG14082
3R	15307225	3R_15307225_SNP [dm3] 3R_19481503_SNP [dm6]	T	C	5.218e^-4	0.851	SYNONYMOUS_CODING Dys
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	5.231e^-4	0.851	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	5.236e^-4	0.851	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	17736914	3L_17736914_SNP [dm3] 3L_17743814_SNP [dm6]	T	C	5.237e^-4	0.851	INTRON Ccn
3L	17740761	3L_17740761_SNP [dm3] 3L_17747661_SNP [dm6]	C	G	5.237e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
2L	1116043	2L_1116043_SNP [dm3] 2L_1116043_SNP [dm6]	A	T	5.241e^-4	0.851	INTRON Pino
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	5.256e^-4	0.851	INTERGENIC
2L	12181449	2L_12181449_SNP [dm3] 2L_12181449_SNP [dm6]	T	C	5.308e^-4	0.851	INTRON aret
2L	12181451	2L_12181451_SNP [dm3] 2L_12181451_SNP [dm6]	T	C	5.308e^-4	0.851	INTRON aret
2R	14895769	2R_14895769_SNP [dm3] 2R_19008264_SNP [dm6]	A	T	5.316e^-4	0.851	INTRON tn
3R	25244780	3R_25244780_DEL [dm3] 3R_29419058_DEL [dm6]	GT	G	5.317e^-4	0.851	INTRON Ptp99A
2R	18966912	2R_18966912_SNP [dm3] 2R_23079389_SNP [dm6]	T	C	5.321e^-4	0.851	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	18966914	2R_18966914_DEL [dm3] 2R_23079391_DEL [dm6]	TGATA	T	5.321e^-4	0.851	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
2R	18966921	2R_18966921_INS [dm3] 2R_23079398_INS [dm6]	T	TATACATCTTATTC...	5.321e^-4	0.851	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
3L	12606076	3L_12606076_SNP [dm3] 3L_12612976_SNP [dm6]	G	A	5.321e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
2R	8118110	2R_8118110_SNP [dm3] 2R_12230605_SNP [dm6]	C	T	5.323e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11656525	X_11656525_SNP [dm3] X_11762492_SNP [dm6]	A	G	5.345e^-4	0.851	DOWNSTREAM CG9360 INTRON m
2L	9799968	2L_9799968_SNP [dm3] 2L_9799968_SNP [dm6]	C	A	5.358e^-4	0.851	INTRON nAChRalpha6
2L	4102683	2L_4102683_SNP [dm3] 2L_4102683_SNP [dm6]	A	G	5.407e^-4	0.851	INTRON ed
2R	18357192	2R_18357192_SNP [dm3] 2R_22469687_SNP [dm6]	T	C	5.414e^-4	0.851	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17709429	3L_17709429_SNP [dm3] 3L_17716329_SNP [dm6]	C	T	5.422e^-4	0.851	INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18489112	3R_18489112_SNP [dm3] 3R_22663390_SNP [dm6]	A	G	5.423e^-4	0.851	INTRON CG45058
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	5.444e^-4	0.851	INTRON Ptp4E
3R	18596196	3R_18596196_SNP [dm3] 3R_22770474_SNP [dm6]	A	T	5.459e^-4	0.851	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
2R	19021333	2R_19021333_SNP [dm3] 2R_23133810_SNP [dm6]	T	C	5.467e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	5504251	2R_5504251_SNP [dm3] 2R_9616746_SNP [dm6]	T	C	5.473e^-4	0.851	INTRON Mmp2
2L	5248334	2L_5248334_SNP [dm3] 2L_5248334_SNP [dm6]	C	A	5.485e^-4	0.851	INTRON tkv
2L	6329639	2L_6329639_SNP [dm3] 2L_6329639_SNP [dm6]	A	T	5.498e^-4	0.851	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
3R	16863205	3R_16863205_SNP [dm3] 3R_21037483_SNP [dm6]	C	T	5.507e^-4	0.851	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	1807153	3R_1807153_SNP [dm3] 3R_5981431_SNP [dm6]	G	A	5.524e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16192000	3R_16192000_SNP [dm3] 3R_20366278_SNP [dm6]	T	C	5.528e^-4	0.851	INTERGENIC
3R	16192004	3R_16192004_SNP [dm3] 3R_20366282_SNP [dm6]	T	C	5.528e^-4	0.851	INTERGENIC
3L	3759047	3L_3759047_SNP [dm3] 3L_3759047_SNP [dm6]	C	T	5.528e^-4	0.851	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	4219331	2L_4219331_SNP [dm3] 2L_4219331_SNP [dm6]	C	G	5.545e^-4	0.851	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6478046	2L_6478046_SNP [dm3] 2L_6478046_SNP [dm6]	G	A	5.565e^-4	0.851	SYNONYMOUS_CODING Sec61alpha	TF binding site mE1_TFBS_sens
2L	6972206	2L_6972206_INS [dm3] 2L_6972206_INS [dm6]	A	ATAAAA	5.577e^-4	0.851	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	12907548	3R_12907548_SNP [dm3] 3R_17081826_SNP [dm6]	A	G	5.580e^-4	0.851	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	16258485	X_16258485_SNP [dm3] X_16364452_SNP [dm6]	G	A	5.585e^-4	0.851	SYNONYMOUS_CODING nonA	TF binding site mE1_TFBS_sens
X	12028940	X_12028940_SNP [dm3] X_12134907_SNP [dm6]	C	T	5.604e^-4	0.851	INTRON Ten-a
3L	18214985	3L_18214985_SNP [dm3] 3L_18221885_SNP [dm6]	A	T	5.607e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8142562	X_8142562_SNP [dm3] X_8248529_SNP [dm6]	C	A	5.622e^-4	0.851	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	11490486	2L_11490486_SNP [dm3] 2L_11490486_SNP [dm6]	T	C	5.623e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16258413	X_16258413_SNP [dm3] X_16364380_SNP [dm6]	T	C	5.624e^-4	0.851	SYNONYMOUS_CODING nonA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9193363	X_9193363_SNP [dm3] X_9299330_SNP [dm6]	G	A	5.626e^-4	0.851	INTRON lz
2R	4709852	2R_4709852_SNP [dm3] 2R_8822347_SNP [dm6]	G	C	5.629e^-4	0.851	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	2617294	3L_2617294_SNP [dm3] 3L_2617294_SNP [dm6]	G	T	5.636e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8242723	3L_8242723_SNP [dm3] 3L_8249623_SNP [dm6]	G	A	5.658e^-4	0.851	INTRON Dscam4
3L	6950796	3L_6950796_SNP [dm3] 3L_6957696_SNP [dm6]	G	A	5.659e^-4	0.851	SYNONYMOUS_CODING CG10075 UPSTREAM Surf1 DOWNSTREAM CG9948	TF binding site BDTNP1_TFBS_dl
3L	17934957	3L_17934957_SNP [dm3] 3L_17941857_SNP [dm6]	A	T	5.664e^-4	0.851	INTRON CG43174
3L	17934961	3L_17934961_SNP [dm3] 3L_17941861_SNP [dm6]	G	T	5.664e^-4	0.851	INTRON CG43174
3L	17904520	3L_17904520_SNP [dm3] 3L_17911420_SNP [dm6]	G	A	5.666e^-4	0.851	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5346003	3L_5346003_SNP [dm3] 3L_5352903_SNP [dm6]	G	A	5.669e^-4	0.851	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5164757	3L_5164757_SNP [dm3] 3L_5171657_SNP [dm6]	G	A	5.691e^-4	0.851	INTRON shep
X	15266913	X_15266913_SNP [dm3] X_15372880_SNP [dm6]	G	A	5.694e^-4	0.851	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3L	16823477	3L_16823477_SNP [dm3] 3L_16830377_SNP [dm6]	C	G	5.700e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6081566	3L_6081566_SNP [dm3] 3L_6088466_SNP [dm6]	A	G	5.707e^-4	0.851	INTRON CG13293	TF binding site mE1_TFBS_cad
2L	8843700	2L_8843700_SNP [dm3] 2L_8843700_SNP [dm6]	G	T	5.714e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	8843702	2L_8843702_SNP [dm3] 2L_8843702_SNP [dm6]	A	G	5.714e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	1706280	3L_1706280_SNP [dm3] 3L_1706280_SNP [dm6]	G	A	5.714e^-4	0.851	INTRON CG7991	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5849965	2L_5849965_SNP [dm3] 2L_5849965_SNP [dm6]	G	A	5.721e^-4	0.851	INTRON TrissinR
3L	9485670	3L_9485670_SNP [dm3] 3L_9492570_SNP [dm6]	C	G	5.731e^-4	0.851	UPSTREAM CG32037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26682918	3R_26682918_SNP [dm3] 3R_30857196_SNP [dm6]	T	A	5.740e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20198180	2R_20198180_SNP [dm3] 2R_24310657_SNP [dm6]	C	G	5.756e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2R	20198186	2R_20198186_SNP [dm3] 2R_24310663_SNP [dm6]	A	C	5.756e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2R	20198191	2R_20198191_SNP [dm3] 2R_24310668_SNP [dm6]	C	T	5.756e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2R	20198198	2R_20198198_SNP [dm3] 2R_24310675_SNP [dm6]	T	C	5.756e^-4	0.851	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	14596275	3R_14596275_SNP [dm3] 3R_18770553_SNP [dm6]	A	G	5.788e^-4	0.851	INTRON CG7720
3L	6666830	3L_6666830_INS [dm3] 3L_6673730_INS [dm6]	A	AT	5.789e^-4	0.851	INTERGENIC
X	5989263	X_5989263_SNP [dm3] X_6095230_SNP [dm6]	T	C	5.813e^-4	0.851	INTRON Nep1
2R	18196385	2R_18196385_SNP [dm3] 2R_22308880_SNP [dm6]	A	C	5.817e^-4	0.851	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10946646	3R_10946646_INS [dm3] 3R_15120924_INS [dm6]	T	TGGT	5.827e^-4	0.851	INTRON CG42788
3L	6338609	3L_6338609_SNP [dm3] 3L_6345509_SNP [dm6]	T	A	5.870e^-4	0.851	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	11276311	2R_11276311_SNP [dm3] 2R_15388806_SNP [dm6]	A	G	5.886e^-4	0.851	DOWNSTREAM SRPK INTERGENIC
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	5.889e^-4	0.851	DOWNSTREAM CG33234 INTRON Fife
2L	6972185	2L_6972185_SNP [dm3] 2L_6972185_SNP [dm6]	T	C	5.890e^-4	0.851	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	6972200	2L_6972200_SNP [dm3] 2L_6972200_SNP [dm6]	T	A	5.890e^-4	0.851	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	1446355	3R_1446355_DEL [dm3] 3R_5620633_DEL [dm6]	GTAG	G	5.898e^-4	0.851	INTRON Spec2
3L	9552474	3L_9552474_SNP [dm3] 3L_9559374_SNP [dm6]	A	T	5.900e^-4	0.851	INTRON CG42673
3L	17707196	3L_17707196_SNP [dm3] 3L_17714096_SNP [dm6]	G	A	5.910e^-4	0.851	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18164811	3R_18164811_SNP [dm3] 3R_22339089_SNP [dm6]	A	G	5.914e^-4	0.851	INTRON CG5388	TF binding site mE1_TFBS_Trl
3L	17737621	3L_17737621_SNP [dm3] 3L_17744521_SNP [dm6]	G	A	5.917e^-4	0.851	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	17393634	3R_17393634_SNP [dm3] 3R_21567912_SNP [dm6]	G	T	5.938e^-4	0.851	INTRON CG15498
3R	17393639	3R_17393639_SNP [dm3] 3R_21567917_SNP [dm6]	T	A	5.938e^-4	0.851	INTRON CG15498
X	18877151	X_18877151_SNP [dm3] X_18983118_SNP [dm6]	C	A	5.947e^-4	0.851	INTRON CG43759
2R	8889901	2R_8889901_SNP [dm3] 2R_13002396_SNP [dm6]	C	A	5.947e^-4	0.851	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11533747	2L_11533747_SNP [dm3] 2L_11533747_SNP [dm6]	T	C	5.950e^-4	0.851	UTR_3_PRIME CG34162 INTRON CR42743
3L	17244868	3L_17244868_SNP [dm3] 3L_17251768_SNP [dm6]	C	G	5.950e^-4	0.851	DOWNSTREAM CG6497 INTRON CR43870
2R	5815348	2R_5815348_SNP [dm3] 2R_9927843_SNP [dm6]	T	C	5.978e^-4	0.851	INTRON Mef2
3R	5722586	3R_5722586_SNP [dm3] 3R_9896864_SNP [dm6]	A	G	5.996e^-4	0.851	INTRON Glut4EF
3R	5722791	3R_5722791_SNP [dm3] 3R_9897069_SNP [dm6]	T	A	5.996e^-4	0.851	INTRON Glut4EF
2L	8325904	2L_8325904_SNP [dm3] 2L_8325904_SNP [dm6]	A	T	5.997e^-4	0.851	UPSTREAM CG7781 INTERGENIC
3R	26571821	3R_26571821_SNP [dm3] 3R_30746099_SNP [dm6]	T	G	6.001e^-4	0.851	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3R	26577766	3R_26577766_SNP [dm3] 3R_30752044_SNP [dm6]	C	T	6.001e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10991686	2L_10991686_SNP [dm3] 2L_10991686_SNP [dm6]	G	A	6.021e^-4	0.851	SYNONYMOUS_CODING CG16833
3R	26176177	3R_26176177_SNP [dm3] 3R_30350455_SNP [dm6]	G	C	6.063e^-4	0.851	INTRON hdc
3R	17393620	3R_17393620_SNP [dm3] 3R_21567898_SNP [dm6]	A	G	6.078e^-4	0.851	INTRON CG15498
3L	18442860	3L_18442860_SNP [dm3] 3L_18449760_SNP [dm6]	A	C	6.087e^-4	0.851	INTERGENIC
X	21126841	X_21126841_SNP [dm3] X_21255814_SNP [dm6]	T	G	6.106e^-4	0.851	INTRON CG32521
2R	19150948	2R_19150948_SNP [dm3] 2R_23263425_SNP [dm6]	C	T	6.110e^-4	0.851	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19438441	3R_19438441_SNP [dm3] 3R_23612719_SNP [dm6]	A	T	6.147e^-4	0.851	INTRON CG31145
3R	26176265	3R_26176265_SNP [dm3] 3R_30350543_SNP [dm6]	C	G	6.151e^-4	0.851	INTRON hdc
2L	4679490	2L_4679490_SNP [dm3] 2L_4679490_SNP [dm6]	A	C	6.155e^-4	0.851	INTERGENIC
2R	19648833	2R_19648833_DEL [dm3] 2R_23761310_DEL [dm6]	TAA	G	6.158e^-4	0.851	INTRON CG9850
X	17671102	X_17671102_SNP [dm3] X_17777069_SNP [dm6]	A	T	6.164e^-4	0.851	INTRON unc-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10415205	X_10415205_SNP [dm3] X_10521172_SNP [dm6]	A	G	6.171e^-4	0.851	INTRON spri
2R	18126997	2R_18126997_DEL [dm3] 2R_22239492_DEL [dm6]	AA	C	6.179e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15530569	2L_15530569_DEL [dm3] 2L_15530569_DEL [dm6]	AAGAGACCAAA...	A	6.204e^-4	0.851	INTERGENIC
3L	17740611	3L_17740611_SNP [dm3] 3L_17747511_SNP [dm6]	A	C	6.212e^-4	0.851	UPSTREAM CG6034 INTRON Ccn
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	6.233e^-4	0.851	INTERGENIC
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	6.233e^-4	0.851	INTERGENIC
3L	5929692	3L_5929692_SNP [dm3] 3L_5936592_SNP [dm6]	C	T	6.239e^-4	0.851	INTRON CG33993
2L	15473738	2L_15473738_SNP [dm3] 2L_15473738_SNP [dm6]	C	G	6.242e^-4	0.851	INTERGENIC
3L	17939329	3L_17939329_SNP [dm3] 3L_17946229_SNP [dm6]	T	C	6.244e^-4	0.851	DOWNSTREAM CG43174 & 1 other INTERGENIC
3R	11978375	3R_11978375_SNP [dm3] 3R_16152653_SNP [dm6]	G	A	6.247e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5927559	3L_5927559_SNP [dm3] 3L_5934459_SNP [dm6]	G	T	6.248e^-4	0.851	NON_SYNONYMOUS_CODING CG33993
3L	10686258	3L_10686258_SNP [dm3] 3L_10693158_SNP [dm6]	T	C	6.248e^-4	0.851	UTR_5_PRIME CG33493 DOWNSTREAM CG6463 & 1 other	TF binding site mE1_TFBS_sens
2R	4623039	2R_4623039_SNP [dm3] 2R_8735534_SNP [dm6]	C	A	6.254e^-4	0.851	UPSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10249771	3R_10249771_SNP [dm3] 3R_14424049_SNP [dm6]	G	A	6.261e^-4	0.851	INTRON cv-c
3L	7977706	3L_7977706_SNP [dm3] 3L_7984606_SNP [dm6]	T	C	6.262e^-4	0.851	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	5601545	3R_5601545_SNP [dm3] 3R_9775823_SNP [dm6]	A	G	6.280e^-4	0.851	NON_SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	6.289e^-4	0.851	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3R	18155785	3R_18155785_SNP [dm3] 3R_22330063_SNP [dm6]	A	G	6.308e^-4	0.851	SYNONYMOUS_CODING CG7080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17825586	2R_17825586_SNP [dm3] 2R_21938081_SNP [dm6]	G	A	6.310e^-4	0.851	INTRON Fili
3R	1446398	3R_1446398_SNP [dm3] 3R_5620676_SNP [dm6]	A	G	6.315e^-4	0.851	INTRON Spec2
X	11437407	X_11437407_SNP [dm3] X_11543374_SNP [dm6]	G	A	6.349e^-4	0.851	INTRON Drak	TF binding site mE1_TFBS_HSA
2R	8891386	2R_8891386_SNP [dm3] 2R_13003881_SNP [dm6]	C	T	6.355e^-4	0.851	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14498191	3L_14498191_SNP [dm3] 3L_14505091_SNP [dm6]	C	T	6.359e^-4	0.851	INTRON bbg
3L	8756577	3L_8756577_SNP [dm3] 3L_8763477_SNP [dm6]	A	C	6.363e^-4	0.851	INTRON Fhos
3L	8756596	3L_8756596_SNP [dm3] 3L_8763496_SNP [dm6]	G	A	6.363e^-4	0.851	INTRON Fhos
2R	19624995	2R_19624995_SNP [dm3] 2R_23737472_SNP [dm6]	G	A	6.370e^-4	0.851	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12606235	3L_12606235_SNP [dm3] 3L_12613135_SNP [dm6]	G	A	6.387e^-4	0.851	INTRON caup	silencer mE1_HDAC_PRE
2R	15030324	2R_15030324_SNP [dm3] 2R_19142819_SNP [dm6]	A	G	6.389e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15030325	2R_15030325_SNP [dm3] 2R_19142820_SNP [dm6]	G	C	6.389e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15030364	2R_15030364_SNP [dm3] 2R_19142859_SNP [dm6]	T	G	6.389e^-4	0.851	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24123726	3R_24123726_SNP [dm3] 3R_28298004_SNP [dm6]	G	A	6.392e^-4	0.851	INTERGENIC
3L	2581730	3L_2581730_SNP [dm3] 3L_2581730_SNP [dm6]	C	A	6.397e^-4	0.851	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8091499	3L_8091499_SNP [dm3] 3L_8098399_SNP [dm6]	T	C	6.406e^-4	0.851	SYNONYMOUS_CODING Ect4 UTR_5_PRIME Ect4
3L	8091796	3L_8091796_SNP [dm3] 3L_8098696_SNP [dm6]	G	C	6.406e^-4	0.851	NON_SYNONYMOUS_CODING Ect4
3L	8091867	3L_8091867_SNP [dm3] 3L_8098767_SNP [dm6]	G	C	6.406e^-4	0.851	INTRON Ect4
3L	8091880	3L_8091880_SNP [dm3] 3L_8098780_SNP [dm6]	A	G	6.406e^-4	0.851	INTRON Ect4
3L	12600831	3L_12600831_SNP [dm3] 3L_12607731_SNP [dm6]	A	G	6.408e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10948522	3R_10948522_INS [dm3] 3R_15122800_INS [dm6]	A	ATC	6.416e^-4	0.851	INTRON CG42788
3L	10239967	3L_10239967_SNP [dm3] 3L_10246867_SNP [dm6]	T	A	6.426e^-4	0.851	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3759072	3L_3759072_SNP [dm3] 3L_3759072_SNP [dm6]	G	T	6.435e^-4	0.851	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	6.452e^-4	0.851	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	6.452e^-4	0.851	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	6.452e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	6.452e^-4	0.851	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	6.452e^-4	0.851	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	6.452e^-4	0.851	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	6.452e^-4	0.851	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	6.452e^-4	0.851	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	6.452e^-4	0.851	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	6.452e^-4	0.851	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	6.452e^-4	0.851	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	6.452e^-4	0.851	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	6.452e^-4	0.851	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	6.452e^-4	0.851	INTRON dpr8
2L	17415652	2L_17415652_SNP [dm3] 2L_17415652_SNP [dm6]	G	A	6.468e^-4	0.851	UTR_3_PRIME Dif INTRON Dif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	6.500e^-4	0.851	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	18877136	X_18877136_SNP [dm3] X_18983103_SNP [dm6]	G	C	6.510e^-4	0.851	INTRON CG43759
3L	7431703	3L_7431703_SNP [dm3] 3L_7438603_SNP [dm6]	C	T	6.514e^-4	0.851	INTRON CG42458 & 1 other
2L	4432242	2L_4432242_SNP [dm3] 2L_4432242_SNP [dm6]	C	T	6.525e^-4	0.851	INTRON CG15431
2L	19121812	2L_19121812_SNP [dm3] 2L_19121812_SNP [dm6]	C	T	6.533e^-4	0.851	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
2L	6509236	2L_6509236_SNP [dm3] 2L_6509236_SNP [dm6]	A	G	6.536e^-4	0.851	UPSTREAM CR44775 INTRON CG31637
2L	6509255	2L_6509255_SNP [dm3] 2L_6509255_SNP [dm6]	C	T	6.536e^-4	0.851	UPSTREAM CR44775 INTRON CG31637
2L	12234720	2L_12234720_SNP [dm3] 2L_12234720_SNP [dm6]	A	G	6.537e^-4	0.851	INTRON aret
2L	7449673	2L_7449673_SNP [dm3] 2L_7449673_SNP [dm6]	C	T	6.539e^-4	0.851	UTR_5_PRIME santa-maria INTRON santa-maria
3L	16938408	3L_16938408_INS [dm3] 3L_16945308_INS [dm6]	A	AA	6.546e^-4	0.851	INTRON Obp73a
X	3856676	X_3856676_SNP [dm3] X_3962643_SNP [dm6]	C	A	6.552e^-4	0.851	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA
3R	19138516	3R_19138516_SNP [dm3] 3R_23312794_SNP [dm6]	G	T	6.565e^-4	0.851	INTRON pnt
X	22164099	X_22164099_SNP [dm3] X_22762263_SNP [dm6]	G	A	6.566e^-4	0.851	INTRON CR44997
X	6804654	X_6804654_SNP [dm3] X_6910621_SNP [dm6]	C	T	6.573e^-4	0.851	INTRON CG14431
3R	14631963	3R_14631963_SNP [dm3] 3R_18806241_SNP [dm6]	C	A	6.582e^-4	0.851	SYNONYMOUS_CODING CG18208	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	6.595e^-4	0.851	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	6.595e^-4	0.851	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	6.595e^-4	0.851	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	6.595e^-4	0.851	INTERGENIC
X	16249558	X_16249558_SNP [dm3] X_16355525_SNP [dm6]	C	T	6.603e^-4	0.851	UTR_3_PRIME sl
2R	19358438	2R_19358438_INS [dm3] 2R_23470915_INS [dm6]	T	TAGAT	6.615e^-4	0.851	INTRON CG43795 & 1 other
X	17269599	X_17269599_SNP [dm3] X_17375566_SNP [dm6]	A	G	6.619e^-4	0.851	INTERGENIC
X	17269621	X_17269621_SNP [dm3] X_17375588_SNP [dm6]	C	A	6.619e^-4	0.851	INTERGENIC
2R	6154658	2R_6154658_SNP [dm3] 2R_10267153_SNP [dm6]	G	A	6.627e^-4	0.851	SYNONYMOUS_CODING CG12910	TF binding site BDTNP1_TFBS_da
2R	10526302	2R_10526302_SNP [dm3] 2R_14638797_SNP [dm6]	C	T	6.628e^-4	0.851	UTR_3_PRIME CG43236 UPSTREAM CG42715 DOWNSTREAM CG43236	TF binding site mE1_TFBS_inv
3L	17739432	3L_17739432_SNP [dm3] 3L_17746332_SNP [dm6]	G	T	6.628e^-4	0.851	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4190131	2L_4190131_SNP [dm3] 2L_4190131_SNP [dm6]	T	C	6.656e^-4	0.851	SYNONYMOUS_CODING CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
2R	15321103	2R_15321103_SNP [dm3] 2R_19433598_SNP [dm6]	G	A	6.656e^-4	0.851	SYNONYMOUS_CODING Fak	TF binding site mE1_TFBS_inv
2L	1555163	2L_1555163_SNP [dm3] 2L_1555163_SNP [dm6]	T	C	6.660e^-4	0.851	UTR_5_PRIME haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6654702	3L_6654702_SNP [dm3] 3L_6661602_SNP [dm6]	T	C	6.692e^-4	0.851	INTERGENIC
3R	17393618	3R_17393618_SNP [dm3] 3R_21567896_SNP [dm6]	A	T	6.698e^-4	0.851	INTRON CG15498
2R	3197305	2R_3197305_SNP [dm3] 2R_7309800_SNP [dm6]	A	G	6.702e^-4	0.851	INTERGENIC
3R	11006717	3R_11006717_SNP [dm3] 3R_15180995_SNP [dm6]	G	A	6.715e^-4	0.851	UPSTREAM Mf INTRON Gyc88E & 1 other
X	7810944	X_7810944_SNP [dm3] X_7916911_SNP [dm6]	G	A	6.733e^-4	0.851	INTRON snz
2R	13060154	2R_13060154_SNP [dm3] 2R_17172649_SNP [dm6]	T	A	6.746e^-4	0.851	INTERGENIC
3R	26198202	3R_26198202_SNP [dm3] 3R_30372480_SNP [dm6]	A	G	6.764e^-4	0.851	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18777900	2R_18777900_SNP [dm3] 2R_22890377_SNP [dm6]	G	A	6.765e^-4	0.851	SPLICE_SITE_REGION MED23 INTRON MED23	TF binding site mE1_TFBS_cad
X	2747617	X_2747617_SNP [dm3] X_2853584_SNP [dm6]	G	C	6.771e^-4	0.851	INTRON kirre
X	8082053	X_8082053_SNP [dm3] X_8188020_SNP [dm6]	C	T	6.773e^-4	0.851	INTRON sdt
3L	16988726	3L_16988726_INS [dm3] 3L_16995626_INS [dm6]	A	AAACCAAAA	6.784e^-4	0.851	INTRON CG3764	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12360597	2R_12360597_DEL [dm3] 2R_16473092_DEL [dm6]	TTGCTT	T	6.795e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9412604	2L_9412604_SNP [dm3] 2L_9412604_SNP [dm6]	A	C	6.825e^-4	0.851	INTRON Shawl
2R	11911343	2R_11911343_SNP [dm3] 2R_16023838_SNP [dm6]	A	G	6.851e^-4	0.851	SYNONYMOUS_CODING CG8399 DOWNSTREAM casp
2R	3868987	2R_3868987_SNP [dm3] 2R_7981482_SNP [dm6]	A	G	6.853e^-4	0.851	INTRON ACC	TF binding site mE1_TFBS_cad
2R	13060152	2R_13060152_SNP [dm3] 2R_17172647_SNP [dm6]	C	T	6.860e^-4	0.851	INTERGENIC
2L	8747245	2L_8747245_SNP [dm3] 2L_8747245_SNP [dm6]	A	G	6.871e^-4	0.851	INTERGENIC
2L	7954157	2L_7954157_INS [dm3] 2L_7954157_INS [dm6]	T	TGGT	6.875e^-4	0.851	INTRON Snoo
3R	26198235	3R_26198235_SNP [dm3] 3R_30372513_SNP [dm6]	T	G	6.882e^-4	0.851	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3678343	2L_3678343_SNP [dm3] 2L_3678343_SNP [dm6]	T	A	6.897e^-4	0.851	INTRON CG34340
2L	9852959	2L_9852959_SNP [dm3] 2L_9852959_SNP [dm6]	C	A	6.907e^-4	0.851	INTRON nAChRalpha6
3R	5416745	3R_5416745_SNP [dm3] 3R_9591023_SNP [dm6]	C	T	6.919e^-4	0.851	UPSTREAM CG8312 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5275318	2R_5275318_SNP [dm3] 2R_9387813_SNP [dm6]	A	G	6.920e^-4	0.851	UTR_5_PRIME CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5275343	2R_5275343_SNP [dm3] 2R_9387838_SNP [dm6]	A	G	6.920e^-4	0.851	UTR_5_PRIME CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7234225	X_7234225_INS [dm3] X_7340192_INS [dm6]	T	TT	6.921e^-4	0.851	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8747286	2L_8747286_SNP [dm3] 2L_8747286_SNP [dm6]	A	G	6.930e^-4	0.851	INTERGENIC
2R	6871224	2R_6871224_SNP [dm3] 2R_10983719_SNP [dm6]	A	T	6.980e^-4	0.851	INTRON luna
3R	11594152	3R_11594152_SNP [dm3] 3R_15768430_SNP [dm6]	G	T	6.981e^-4	0.851	UPSTREAM CG5623 INTERGENIC
2R	3257490	2R_3257490_SNP [dm3] 2R_7369985_SNP [dm6]	C	A	6.989e^-4	0.851	INTRON Dscam1
3L	18215050	3L_18215050_SNP [dm3] 3L_18221950_SNP [dm6]	A	T	6.994e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215061	3L_18215061_SNP [dm3] 3L_18221961_SNP [dm6]	T	A	6.994e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11511169	3R_11511169_SNP [dm3] 3R_15685447_SNP [dm6]	A	G	7.004e^-4	0.851	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	23987612	3R_23987612_SNP [dm3] 3R_28161890_SNP [dm6]	A	C	7.009e^-4	0.851	INTRON CG34354
2R	11597984	2R_11597984_SNP [dm3] 2R_15710479_SNP [dm6]	G	A	7.024e^-4	0.851	INTERGENIC
3L	17930237	3L_17930237_SNP [dm3] 3L_17937137_SNP [dm6]	A	C	7.032e^-4	0.851	INTRON CG43174
3R	25227650	3R_25227650_SNP [dm3] 3R_29401928_SNP [dm6]	C	T	7.043e^-4	0.851	INTRON Ptp99A
2L	4430404	2L_4430404_SNP [dm3] 2L_4430404_SNP [dm6]	G	A	7.054e^-4	0.851	INTRON CG15431
X	17667553	X_17667553_SNP [dm3] X_17773520_SNP [dm6]	A	G	7.054e^-4	0.851	INTRON unc-4
2R	11541287	2R_11541287_SNP [dm3] 2R_15653782_SNP [dm6]	A	G	7.060e^-4	0.851	INTRON CG42524
X	3012029	X_3012029_SNP [dm3] X_3117996_SNP [dm6]	C	T	7.069e^-4	0.851	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10239717	3L_10239717_SNP [dm3] 3L_10246617_SNP [dm6]	A	G	7.079e^-4	0.851	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	11527121	X_11527121_SNP [dm3] X_11633088_SNP [dm6]	C	T	7.085e^-4	0.851	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17900663	3L_17900663_SNP [dm3] 3L_17907563_SNP [dm6]	T	A	7.088e^-4	0.851	UTR_5_PRIME Prestin UPSTREAM CG14353	TF binding site mE1_TFBS_Ubx
X	8081999	X_8081999_SNP [dm3] X_8187966_SNP [dm6]	G	A	7.099e^-4	0.851	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	9656113	2R_9656113_DEL [dm3] 2R_13768608_DEL [dm6]	AT	A	7.101e^-4	0.851	INTERGENIC
3R	9704914	3R_9704914_SNP [dm3] 3R_13879192_SNP [dm6]	T	C	7.101e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4104251	2L_4104251_SNP [dm3] 2L_4104251_SNP [dm6]	T	G	7.104e^-4	0.851	INTRON ed
3L	9909345	3L_9909345_SNP [dm3] 3L_9916245_SNP [dm6]	C	T	7.105e^-4	0.851	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	7772946	2L_7772946_DEL [dm3] 2L_7772946_DEL [dm6]	AGTGGGA	T	7.120e^-4	0.851	INTRON CG7191
2R	18219987	2R_18219987_SNP [dm3] 2R_22332482_SNP [dm6]	G	T	7.120e^-4	0.851	UTR_3_PRIME pgc UPSTREAM T3dh & 1 other
2R	18219993	2R_18219993_SNP [dm3] 2R_22332488_SNP [dm6]	A	G	7.120e^-4	0.851	UTR_3_PRIME pgc UPSTREAM T3dh & 1 other
2R	18219995	2R_18219995_SNP [dm3] 2R_22332490_SNP [dm6]	C	T	7.120e^-4	0.851	UTR_3_PRIME pgc UPSTREAM T3dh & 1 other
2R	20085034	2R_20085034_SNP [dm3] 2R_24197511_SNP [dm6]	G	A	7.120e^-4	0.851	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA transposable element FlyBase
3L	3043865	3L_3043865_SNP [dm3] 3L_3043865_SNP [dm6]	T	A	7.120e^-4	0.851	DOWNSTREAM scramb2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	26578552	3R_26578552_SNP [dm3] 3R_30752830_SNP [dm6]	A	T	7.120e^-4	0.851	INTERGENIC
3L	10239892	3L_10239892_SNP [dm3] 3L_10246792_SNP [dm6]	T	A	7.124e^-4	0.851	EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10239910	3L_10239910_SNP [dm3] 3L_10246810_SNP [dm6]	C	T	7.124e^-4	0.851	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16856391	3R_16856391_SNP [dm3] 3R_21030669_SNP [dm6]	C	T	7.173e^-4	0.851	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9412661	2L_9412661_DEL [dm3] 2L_9412661_DEL [dm6]	ATTATCA	A	7.173e^-4	0.851	INTRON Shawl
2R	5276370	2R_5276370_INS [dm3] 2R_9388865_INS [dm6]	T	TT	7.177e^-4	0.851	UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
2R	6161555	2R_6161555_SNP [dm3] 2R_10274050_SNP [dm6]	A	C	7.181e^-4	0.851	INTRON CAP
3R	14499437	3R_14499437_SNP [dm3] 3R_18673715_SNP [dm6]	T	A	7.183e^-4	0.851	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10244138	3L_10244138_SNP [dm3] 3L_10251038_SNP [dm6]	G	A	7.184e^-4	0.851	INTERGENIC
2R	7616162	2R_7616162_SNP [dm3] 2R_11728657_SNP [dm6]	A	G	7.190e^-4	0.851	INTERGENIC
2R	9624747	2R_9624747_SNP [dm3] 2R_13737242_SNP [dm6]	C	G	7.197e^-4	0.851	INTRON fas
3L	2617282	3L_2617282_SNP [dm3] 3L_2617282_SNP [dm6]	T	G	7.209e^-4	0.851	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26235301	3R_26235301_DEL [dm3] 3R_30409579_DEL [dm6]	CTC	C	7.229e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6174457	2R_6174457_SNP [dm3] 2R_10286952_SNP [dm6]	A	T	7.233e^-4	0.851	UPSTREAM CAP INTRON CAP
3L	12538691	3L_12538691_INS [dm3] 3L_12545591_INS [dm6]	T	TT	7.238e^-4	0.851	INTRON sowah
X	4315424	X_4315424_SNP [dm3] X_4421391_SNP [dm6]	G	C	7.243e^-4	0.851	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4315511	X_4315511_SNP [dm3] X_4421478_SNP [dm6]	C	T	7.243e^-4	0.851	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	4315530	X_4315530_SNP [dm3] X_4421497_SNP [dm6]	G	T	7.243e^-4	0.851	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	5183729	2R_5183729_SNP [dm3] 2R_9296224_SNP [dm6]	C	A	7.246e^-4	0.851	INTRON Drep-2
2R	3925496	2R_3925496_SNP [dm3] 2R_8037991_SNP [dm6]	G	C	7.248e^-4	0.851	INTRON Optix	TF binding site mE1_TFBS_sens
3R	13750228	3R_13750228_INS [dm3] 3R_17924506_INS [dm6]	T	TGTAT	7.273e^-4	0.851	INTRON cpo
X	7977060	X_7977060_SNP [dm3] X_8083027_SNP [dm6]	A	G	7.298e^-4	0.851	DOWNSTREAM CG2256 INTERGENIC
3L	18214976	3L_18214976_SNP [dm3] 3L_18221876_SNP [dm6]	C	G	7.302e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11540844	2R_11540844_SNP [dm3] 2R_15653339_SNP [dm6]	A	G	7.309e^-4	0.851	INTRON CG42524
3L	3143716	3L_3143716_SNP [dm3] 3L_3143716_SNP [dm6]	C	G	7.317e^-4	0.851	UPSTREAM CG1291 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6649814	3L_6649814_SNP [dm3] 3L_6656714_SNP [dm6]	A	C	7.349e^-4	0.851	INTERGENIC
3L	6649841	3L_6649841_SNP [dm3] 3L_6656741_SNP [dm6]	T	G	7.349e^-4	0.851	INTERGENIC
2R	13767108	2R_13767108_SNP [dm3] 2R_17879603_SNP [dm6]	C	T	7.360e^-4	0.851	SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk
2R	12106225	2R_12106225_SNP [dm3] 2R_16218720_SNP [dm6]	A	C	7.365e^-4	0.851	UPSTREAM tRNA:CR30239 DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15554157	2L_15554157_SNP [dm3] 2L_15554157_SNP [dm6]	T	G	7.388e^-4	0.851	INTRON kek3
X	15266998	X_15266998_SNP [dm3] X_15372965_SNP [dm6]	A	T	7.411e^-4	0.851	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5276355	2R_5276355_SNP [dm3] 2R_9388850_SNP [dm6]	G	A	7.423e^-4	0.851	UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
2R	11441358	2R_11441358_SNP [dm3] 2R_15553853_SNP [dm6]	G	A	7.426e^-4	0.851	INTERGENIC
X	19361762	X_19361762_SNP [dm3] X_19467729_SNP [dm6]	A	G	7.429e^-4	0.851	INTRON kek5
2L	2664342	2L_2664342_SNP [dm3] 2L_2664342_SNP [dm6]	C	A	7.429e^-4	0.851	UPSTREAM CG9879 INTERGENIC
3L	12062279	3L_12062279_SNP [dm3] 3L_12069179_SNP [dm6]	G	A	7.431e^-4	0.851	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3438346	3L_3438346_SNP [dm3] 3L_3438346_SNP [dm6]	G	A	7.435e^-4	0.851	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15942281	2L_15942281_SNP [dm3] 2L_15942281_SNP [dm6]	A	G	7.442e^-4	0.851	SYNONYMOUS_CODING CG12448 INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
2R	18538508	2R_18538508_SNP [dm3] 2R_22651003_SNP [dm6]	A	C	7.463e^-4	0.851	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16196047	2R_16196047_SNP [dm3] 2R_20308542_SNP [dm6]	T	G	7.472e^-4	0.851	UPSTREAM CG11200 DOWNSTREAM CG13868 INTRON CG11200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20263213	2L_20263213_SNP [dm3] 2L_20263213_SNP [dm6]	G	C	7.476e^-4	0.851	DOWNSTREAM CG17570 INTERGENIC
3R	5724420	3R_5724420_SNP [dm3] 3R_9898698_SNP [dm6]	G	A	7.477e^-4	0.851	INTRON Glut4EF
3R	26571791	3R_26571791_SNP [dm3] 3R_30746069_SNP [dm6]	C	T	7.486e^-4	0.851	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
X	5160307	X_5160307_SNP [dm3] X_5266274_SNP [dm6]	C	T	7.489e^-4	0.851	INTERGENIC
2R	15713675	2R_15713675_SNP [dm3] 2R_19826170_SNP [dm6]	T	C	7.489e^-4	0.851	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	23194283	3L_23194283_DEL [dm3] 3L_23201183_DEL [dm6]	CAT	C	7.505e^-4	0.851	INTERGENIC	transposable element FlyBase
2R	9799496	2R_9799496_SNP [dm3] 2R_13911991_SNP [dm6]	A	G	7.509e^-4	0.851	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4785240	3L_4785240_SNP [dm3] 3L_4785240_SNP [dm6]	A	C	7.510e^-4	0.851	INTRON RhoGEF64C
X	6320117	X_6320117_SNP [dm3] X_6426084_SNP [dm6]	A	G	7.512e^-4	0.851	INTRON CG42340
3R	1365148	3R_1365148_SNP [dm3] 3R_5539426_SNP [dm6]	T	A	7.518e^-4	0.851	DOWNSTREAM CG2519 & 1 other INTERGENIC
2L	2692031	2L_2692031_SNP [dm3] 2L_2692031_SNP [dm6]	C	T	7.519e^-4	0.851	INTRON CG31690
2L	9184705	2L_9184705_SNP [dm3] 2L_9184705_SNP [dm6]	T	G	7.522e^-4	0.851	INTRON tai
3L	12093643	3L_12093643_SNP [dm3] 3L_12100543_SNP [dm6]	T	C	7.530e^-4	0.851	INTERGENIC
3R	26575657	3R_26575657_SNP [dm3] 3R_30749935_SNP [dm6]	A	G	7.542e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26579718	3R_26579718_SNP [dm3] 3R_30753996_SNP [dm6]	C	T	7.542e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2711022	2L_2711022_SNP [dm3] 2L_2711022_SNP [dm6]	G	A	7.562e^-4	0.851	NON_SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10268414	2L_10268414_SNP [dm3] 2L_10268414_SNP [dm6]	G	A	7.570e^-4	0.851	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
3R	15676596	3R_15676596_SNP [dm3] 3R_19850874_SNP [dm6]	G	C	7.571e^-4	0.851	SYNONYMOUS_CODING CG4662
3L	832925	3L_832925_SNP [dm3] 3L_832925_SNP [dm6]	G	A	7.574e^-4	0.851	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5276191	2R_5276191_SNP [dm3] 2R_9388686_SNP [dm6]	T	C	7.602e^-4	0.851	START_GAINED CG13954 UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	13682420	2L_13682420_SNP [dm3] 2L_13682420_SNP [dm6]	A	T	7.624e^-4	0.851	INTRON CG31814
2R	16401412	2R_16401412_SNP [dm3] 2R_20513907_SNP [dm6]	G	T	7.636e^-4	0.851	UPSTREAM CG13426 INTERGENIC
3R	17317108	3R_17317108_SNP [dm3] 3R_21491386_SNP [dm6]	A	T	7.652e^-4	0.851	INTERGENIC
2L	7903873	2L_7903873_SNP [dm3] 2L_7903873_SNP [dm6]	T	A	7.657e^-4	0.851	INTRON Snoo
3L	10191049	3L_10191049_SNP [dm3] 3L_10197949_SNP [dm6]	A	G	7.659e^-4	0.851	INTRON ect
3L	6488679	3L_6488679_SNP [dm3] 3L_6495579_SNP [dm6]	A	G	7.659e^-4	0.851	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	15474764	2L_15474764_SNP [dm3] 2L_15474764_SNP [dm6]	T	C	7.674e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2158618	X_2158618_SNP [dm3] X_2264585_SNP [dm6]	A	G	7.698e^-4	0.851	UTR_3_PRIME CG3071 DOWNSTREAM CG2924
2R	4709724	2R_4709724_SNP [dm3] 2R_8822219_SNP [dm6]	A	C	7.705e^-4	0.851	INTRON sns	TF binding site mE1_TFBS_chinmo
2R	4709740	2R_4709740_SNP [dm3] 2R_8822235_SNP [dm6]	A	T	7.705e^-4	0.851	INTRON sns	TF binding site mE1_TFBS_chinmo
2R	4709760	2R_4709760_SNP [dm3] 2R_8822255_SNP [dm6]	T	C	7.705e^-4	0.851	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	4219131	2L_4219131_SNP [dm3] 2L_4219131_SNP [dm6]	C	T	7.717e^-4	0.851	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219151	2L_4219151_SNP [dm3] 2L_4219151_SNP [dm6]	G	A	7.717e^-4	0.851	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219158	2L_4219158_SNP [dm3] 2L_4219158_SNP [dm6]	T	C	7.717e^-4	0.851	INTRON ft	TF binding site mE1_TFBS_HSA
3R	9476357	3R_9476357_SNP [dm3] 3R_13650635_SNP [dm6]	T	G	7.738e^-4	0.851	INTRON rin
3L	17925410	3L_17925410_SNP [dm3] 3L_17932310_SNP [dm6]	C	T	7.752e^-4	0.851	INTERGENIC
3R	969133	3R_969133_SNP [dm3] 3R_5143411_SNP [dm6]	A	G	7.758e^-4	0.851	INTERGENIC
2R	12167571	2R_12167571_SNP [dm3] 2R_16280066_SNP [dm6]	T	A	7.772e^-4	0.851	UTR_5_PRIME CG15704 UPSTREAM CG15705
X	9487549	X_9487549_SNP [dm3] X_9593516_SNP [dm6]	C	T	7.791e^-4	0.851	INTERGENIC
3L	17938214	3L_17938214_SNP [dm3] 3L_17945114_SNP [dm6]	G	A	7.794e^-4	0.851	INTRON CG43174
2L	7163553	2L_7163553_DEL [dm3] 2L_7163553_DEL [dm6]	TAAAGTGTTTT...	T	7.801e^-4	0.851	INTERGENIC
X	3815714	X_3815714_SNP [dm3] X_3921681_SNP [dm6]	C	T	7.808e^-4	0.851	INTRON CG42541
2L	1116042	2L_1116042_SNP [dm3] 2L_1116042_SNP [dm6]	T	C	7.810e^-4	0.851	INTRON Pino
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	7.813e^-4	0.851	DOWNSTREAM CG33234 INTRON Fife
2R	5085362	2R_5085362_SNP [dm3] 2R_9197857_SNP [dm6]	G	A	7.834e^-4	0.851	INTRON unpg
3L	6490124	3L_6490124_SNP [dm3] 3L_6497024_SNP [dm6]	A	C	7.837e^-4	0.851	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	6649809	3L_6649809_SNP [dm3] 3L_6656709_SNP [dm6]	T	A	7.846e^-4	0.851	INTERGENIC
2L	5936777	2L_5936777_SNP [dm3] 2L_5936777_SNP [dm6]	C	G	7.866e^-4	0.851	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9728057	X_9728057_SNP [dm3] X_9834024_SNP [dm6]	G	T	7.871e^-4	0.851	INTRON CG32698
3L	17738224	3L_17738224_INS [dm3] 3L_17745124_INS [dm6]	G	GG	7.885e^-4	0.851	DOWNSTREAM CG6034 INTRON Ccn
2R	8525901	2R_8525901_SNP [dm3] 2R_12638396_SNP [dm6]	C	A	7.887e^-4	0.851	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4056080	3L_4056080_DEL [dm3] 3L_4056080_DEL [dm6]	ATTTAAA	A	7.907e^-4	0.851	INTRON CG1136
2L	1554665	2L_1554665_SNP [dm3] 2L_1554665_SNP [dm6]	T	A	7.935e^-4	0.851	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9783523	3R_9783523_SNP [dm3] 3R_13957801_SNP [dm6]	C	T	7.935e^-4	0.851	UPSTREAM Ipp INTERGENIC
3L	14072933	3L_14072933_SNP [dm3] 3L_14079833_SNP [dm6]	T	C	7.941e^-4	0.851	SYNONYMOUS_CODING btl
2L	1554613	2L_1554613_SNP [dm3] 2L_1554613_SNP [dm6]	G	A	7.943e^-4	0.851	UPSTREAM haf INTERGENIC
2L	1554655	2L_1554655_DEL [dm3] 2L_1554655_DEL [dm6]	TATTTT	A	7.943e^-4	0.851	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8121109	3L_8121109_SNP [dm3] 3L_8128009_SNP [dm6]	C	T	7.968e^-4	0.851	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	6945607	X_6945607_SNP [dm3] X_7051574_SNP [dm6]	C	T	7.971e^-4	0.851	INTRON CG12541
2L	20464574	2L_20464574_SNP [dm3] 2L_20464574_SNP [dm6]	A	C	7.975e^-4	0.851	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16121027	2R_16121027_SNP [dm3] 2R_20233522_SNP [dm6]	G	T	7.978e^-4	0.851	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121033	2R_16121033_SNP [dm3] 2R_20233528_SNP [dm6]	C	T	7.978e^-4	0.851	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121034	2R_16121034_SNP [dm3] 2R_20233529_SNP [dm6]	T	A	7.978e^-4	0.851	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121036	2R_16121036_SNP [dm3] 2R_20233531_SNP [dm6]	C	T	7.978e^-4	0.851	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
3R	9862279	3R_9862279_DEL [dm3] 3R_14036557_DEL [dm6]	TT	T	8.007e^-4	0.851	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	8.014e^-4	0.851	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	8.014e^-4	0.851	UPSTREAM Acp1 INTERGENIC
2R	13920449	2R_13920449_SNP [dm3] 2R_18032944_SNP [dm6]	A	G	8.021e^-4	0.851	INTERGENIC
X	6455613	X_6455613_SNP [dm3] X_6561580_SNP [dm6]	A	T	8.023e^-4	0.851	INTRON CG34417	TF binding site mE1_TFBS_sens
X	6455879	X_6455879_SNP [dm3] X_6561846_SNP [dm6]	T	C	8.023e^-4	0.851	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3215940	2R_3215940_SNP [dm3] 2R_7328435_SNP [dm6]	T	G	8.025e^-4	0.851	INTRON CR45129 & 1 other
3L	18215069	3L_18215069_SNP [dm3] 3L_18221969_SNP [dm6]	C	T	8.028e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10514055	2R_10514055_SNP [dm3] 2R_14626550_SNP [dm6]	G	A	8.040e^-4	0.851	INTERGENIC
2R	10514063	2R_10514063_SNP [dm3] 2R_14626558_SNP [dm6]	A	G	8.040e^-4	0.851	INTERGENIC
2R	15133596	2R_15133596_SNP [dm3] 2R_19246091_SNP [dm6]	A	C	8.040e^-4	0.851	INTERGENIC
2R	15133610	2R_15133610_SNP [dm3] 2R_19246105_SNP [dm6]	A	C	8.040e^-4	0.851	INTERGENIC
2R	15133611	2R_15133611_SNP [dm3] 2R_19246106_SNP [dm6]	A	T	8.040e^-4	0.851	INTERGENIC
2R	15133623	2R_15133623_SNP [dm3] 2R_19246118_SNP [dm6]	T	C	8.040e^-4	0.851	INTERGENIC
2R	15133624	2R_15133624_SNP [dm3] 2R_19246119_SNP [dm6]	C	A	8.040e^-4	0.851	INTERGENIC
3R	15891234	3R_15891234_SNP [dm3] 3R_20065512_SNP [dm6]	G	A	8.040e^-4	0.851	INTERGENIC
3R	15891237	3R_15891237_DEL [dm3] 3R_20065515_DEL [dm6]	GGGTGG	AC	8.040e^-4	0.851	INTERGENIC
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	8.042e^-4	0.851	INTRON shot
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	8.043e^-4	0.851	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	8.043e^-4	0.851	INTERGENIC
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	8.043e^-4	0.851	INTRON dpr8
3L	2654216	3L_2654216_SNP [dm3] 3L_2654216_SNP [dm6]	A	G	8.052e^-4	0.851	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
3R	26571827	3R_26571827_SNP [dm3] 3R_30746105_SNP [dm6]	A	G	8.088e^-4	0.851	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
2R	5276344	2R_5276344_SNP [dm3] 2R_9388839_SNP [dm6]	G	A	8.096e^-4	0.851	START_GAINED CG13954 UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
2R	18778500	2R_18778500_SNP [dm3] 2R_22890977_SNP [dm6]	T	A	8.111e^-4	0.851	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	8.118e^-4	0.851	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1098269	3L_1098269_SNP [dm3] 3L_1098269_SNP [dm6]	A	G	8.136e^-4	0.851	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3154237	X_3154237_SNP [dm3] X_3260204_SNP [dm6]	T	A	8.144e^-4	0.851	INTRON dnc
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	8.146e^-4	0.851	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	8.146e^-4	0.851	INTRON CG15431
X	4750320	X_4750320_SNP [dm3] X_4856287_SNP [dm6]	A	T	8.158e^-4	0.851	INTRON CG42594
2R	9768625	2R_9768625_SNP [dm3] 2R_13881120_SNP [dm6]	A	C	8.171e^-4	0.851	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18389224	2L_18389224_SNP [dm3] 2L_18389224_SNP [dm6]	A	G	8.179e^-4	0.851	UTR_3_PRIME Fas3 INTRON Fas3
2L	17219969	2L_17219969_SNP [dm3] 2L_17219969_SNP [dm6]	A	G	8.181e^-4	0.851	INTRON beat-IIIc
3L	8197120	3L_8197120_SNP [dm3] 3L_8204020_SNP [dm6]	T	C	8.183e^-4	0.851	DOWNSTREAM CG13679 INTERGENIC
3R	26577800	3R_26577800_SNP [dm3] 3R_30752078_SNP [dm6]	G	C	8.187e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17939332	2L_17939332_SNP [dm3] 2L_17939332_SNP [dm6]	C	T	8.188e^-4	0.851	EXON CR44399
3R	13618904	3R_13618904_SNP [dm3] 3R_17793182_SNP [dm6]	C	T	8.195e^-4	0.851	INTRON CG43102
2R	4404078	2R_4404078_SNP [dm3] 2R_8516573_SNP [dm6]	G	A	8.195e^-4	0.851	INTRON mtt
3L	10667158	3L_10667158_SNP [dm3] 3L_10674058_SNP [dm6]	G	C	8.208e^-4	0.851	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	8.212e^-4	0.851	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14899915	3R_14899915_SNP [dm3] 3R_19074193_SNP [dm6]	G	T	8.221e^-4	0.851	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	14499477	3R_14499477_SNP [dm3] 3R_18673755_SNP [dm6]	A	C	8.224e^-4	0.851	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8639214	3L_8639214_SNP [dm3] 3L_8646114_SNP [dm6]	A	C	8.236e^-4	0.851	SPLICE_SITE_DONOR CG13305 SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2664339	2L_2664339_SNP [dm3] 2L_2664339_SNP [dm6]	A	G	8.240e^-4	0.851	UPSTREAM CG9879 INTERGENIC
X	2576171	X_2576171_SNP [dm3] X_2682138_SNP [dm6]	G	A	8.244e^-4	0.851	SYNONYMOUS_CODING CG2652 UPSTREAM HLH3B DOWNSTREAM CR44470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19945263	2L_19945263_SNP [dm3] 2L_19945263_SNP [dm6]	G	T	8.245e^-4	0.851	SPLICE_SITE_REGION sick UTR_5_PRIME sick INTRON sick
2R	11848437	2R_11848437_SNP [dm3] 2R_15960932_SNP [dm6]	G	T	8.248e^-4	0.851	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16782290	2L_16782290_SNP [dm3] 2L_16782290_SNP [dm6]	A	C	8.263e^-4	0.851	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2R	12682855	2R_12682855_SNP [dm3] 2R_16795350_SNP [dm6]	G	A	8.265e^-4	0.851	INTRON CG15615
3L	7431864	3L_7431864_SNP [dm3] 3L_7438764_SNP [dm6]	T	G	8.295e^-4	0.851	SYNONYMOUS_CODING sphinx1 DOWNSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_inv
3L	4943950	3L_4943950_SNP [dm3] 3L_4943950_SNP [dm6]	A	G	8.295e^-4	0.851	INTRON Con
2R	18455186	2R_18455186_SNP [dm3] 2R_22567681_SNP [dm6]	G	T	8.297e^-4	0.851	INTRON dnr1
3R	15547066	3R_15547066_SNP [dm3] 3R_19721344_SNP [dm6]	A	G	8.298e^-4	0.851	INTERGENIC
3L	3086986	3L_3086986_SNP [dm3] 3L_3086986_SNP [dm6]	A	G	8.302e^-4	0.851	SYNONYMOUS_CODING CG11486
2L	20524302	2L_20524302_SNP [dm3] 2L_20524302_SNP [dm6]	T	C	8.303e^-4	0.851	INTERGENIC
3L	2586964	3L_2586964_SNP [dm3] 3L_2586964_SNP [dm6]	T	A	8.303e^-4	0.851	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13487145	3R_13487145_SNP [dm3] 3R_17661423_SNP [dm6]	T	A	8.303e^-4	0.851	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18845417	3R_18845417_SNP [dm3] 3R_23019695_SNP [dm6]	A	C	8.303e^-4	0.851	INTERGENIC
3R	9704980	3R_9704980_SNP [dm3] 3R_13879258_SNP [dm6]	C	T	8.303e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11878064	X_11878064_DEL [dm3] X_11984031_DEL [dm6]	ACAATCG	A	8.303e^-4	0.851	UPSTREAM cac INTRON cac
X	11878087	X_11878087_SNP [dm3] X_11984054_SNP [dm6]	C	T	8.303e^-4	0.851	UPSTREAM cac INTRON cac
X	11878137	X_11878137_SNP [dm3] X_11984104_SNP [dm6]	C	T	8.303e^-4	0.851	UPSTREAM cac INTRON cac
X	3890415	X_3890415_SNP [dm3] X_3996382_SNP [dm6]	A	G	8.303e^-4	0.851	INTERGENIC
2R	19488736	2R_19488736_SNP [dm3] 2R_23601213_SNP [dm6]	A	T	8.308e^-4	0.851	UTR_5_PRIME IM18 UTR_3_PRIME CG10332 UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3141948	3L_3141948_SNP [dm3] 3L_3141948_SNP [dm6]	A	G	8.314e^-4	0.851	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	18016566	3R_18016566_SNP [dm3] 3R_22190844_SNP [dm6]	A	G	8.314e^-4	0.851	INTRON SKIP

By genomic position
Variant impact
Gene name

sons3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results