DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.951e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.02573

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1583 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	20286602	X_20286602_SNP [dm3] X_20415575_SNP [dm6]	G	A	3.107e^-6	0.806	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22839348	3L_22839348_SNP [dm3] 3L_22846248_SNP [dm6]	G	C	4.541e^-6	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11900713	3R_11900713_SNP [dm3] 3R_16074991_SNP [dm6]	A	T	5.158e^-6	0.806	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11388928	3L_11388928_SNP [dm3] 3L_11395828_SNP [dm6]	A	G	5.952e^-6	0.806	DOWNSTREAM CG11726 INTERGENIC
2R	7266250	2R_7266250_SNP [dm3] 2R_11378745_SNP [dm6]	C	A	6.166e^-6	0.806	INTRON Tsp47F
3L	7449822	3L_7449822_SNP [dm3] 3L_7456722_SNP [dm6]	A	G	7.313e^-6	0.806	SYNONYMOUS_CODING ppk26
3L	7449825	3L_7449825_SNP [dm3] 3L_7456725_SNP [dm6]	C	T	7.313e^-6	0.806	SYNONYMOUS_CODING ppk26
3R	11901121	3R_11901121_SNP [dm3] 3R_16075399_SNP [dm6]	A	G	1.414e^-5	0.806	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19295226	2L_19295226_SNP [dm3] 2L_19295226_SNP [dm6]	C	T	1.436e^-5	0.806	INTERGENIC
2R	6622403	2R_6622403_SNP [dm3] 2R_10734898_SNP [dm6]	C	T	1.499e^-5	0.806	UPSTREAM CG7220 INTRON CG7220
2R	10454281	2R_10454281_SNP [dm3] 2R_14566776_SNP [dm6]	G	C	1.634e^-5	0.806	INTRON ttv
2L	19295258	2L_19295258_SNP [dm3] 2L_19295258_SNP [dm6]	A	G	1.718e^-5	0.806	INTERGENIC
X	12438864	X_12438864_SNP [dm3] X_12544831_SNP [dm6]	T	A	1.920e^-5	0.806	INTRON CG43921
X	15249142	X_15249142_SNP [dm3] X_15355109_SNP [dm6]	G	C	2.012e^-5	0.806	INTRON acj6
3L	22840382	3L_22840382_SNP [dm3] 3L_22847282_SNP [dm6]	G	T	2.081e^-5	0.806	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10138347	3L_10138347_SNP [dm3] 3L_10145247_SNP [dm6]	C	T	2.116e^-5	0.806	INTERGENIC
3L	22836321	3L_22836321_SNP [dm3] 3L_22843221_SNP [dm6]	A	T	2.122e^-5	0.806	UPSTREAM tRNA:CR32456 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22831215	3L_22831215_SNP [dm3] 3L_22838115_SNP [dm6]	C	A	2.130e^-5	0.806	UTR_3_PRIME CG11226	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6711687	3R_6711687_SNP [dm3] 3R_10885965_SNP [dm6]	C	T	2.300e^-5	0.806	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1617410	2L_1617410_DEL [dm3] 2L_1617410_DEL [dm6]	AA	A	2.366e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	19917857	3L_19917857_DEL [dm3] 3L_19924757_DEL [dm6]	TA	G	2.506e^-5	0.806	UPSTREAM Grasp65 DOWNSTREAM CG7770 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11609712	2L_11609712_SNP [dm3] 2L_11609712_SNP [dm6]	T	C	2.557e^-5	0.806	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	11388971	3L_11388971_INS [dm3] 3L_11395871_INS [dm6]	A	AT	2.611e^-5	0.806	DOWNSTREAM CG11726 INTERGENIC
2L	8503577	2L_8503577_SNP [dm3] 2L_8503577_SNP [dm6]	C	T	2.766e^-5	0.806	INTRON Dh31
2R	10529846	2R_10529846_SNP [dm3] 2R_14642341_SNP [dm6]	T	G	2.788e^-5	0.806	INTERGENIC
2R	10529851	2R_10529851_SNP [dm3] 2R_14642346_SNP [dm6]	A	G	2.788e^-5	0.806	INTERGENIC
X	12336250	X_12336250_SNP [dm3] X_12442217_SNP [dm6]	A	C	2.864e^-5	0.806	INTRON Pkcdelta
X	12336269	X_12336269_SNP [dm3] X_12442236_SNP [dm6]	A	G	2.978e^-5	0.806	INTRON Pkcdelta
3R	6725942	3R_6725942_SNP [dm3] 3R_10900220_SNP [dm6]	A	T	2.982e^-5	0.806	INTERGENIC
3L	7282284	3L_7282284_SNP [dm3] 3L_7289184_SNP [dm6]	T	C	3.097e^-5	0.806	INTRON unc-13-4A
3L	22840909	3L_22840909_SNP [dm3] 3L_22847809_SNP [dm6]	G	C	3.097e^-5	0.806	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22840930	3L_22840930_SNP [dm3] 3L_22847830_SNP [dm6]	G	T	3.097e^-5	0.806	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22847103	3L_22847103_SNP [dm3] 3L_22854003_SNP [dm6]	A	C	3.171e^-5	0.806	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426
3R	6724270	3R_6724270_SNP [dm3] 3R_10898548_SNP [dm6]	C	A	3.283e^-5	0.806	EXON CR45578	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6721222	3R_6721222_SNP [dm3] 3R_10895500_SNP [dm6]	C	A	3.379e^-5	0.806	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	6721449	3R_6721449_SNP [dm3] 3R_10895727_SNP [dm6]	A	T	3.379e^-5	0.806	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	9095176	X_9095176_SNP [dm3] X_9201143_SNP [dm6]	C	T	3.432e^-5	0.806	INTRON su_r_
X	14748120	X_14748120_SNP [dm3] X_14854087_SNP [dm6]	A	G	3.501e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748327	X_14748327_SNP [dm3] X_14854294_SNP [dm6]	A	T	3.501e^-5	0.806	DOWNSTREAM CG9519 INTRON Flo2
X	14747743	X_14747743_SNP [dm3] X_14853710_SNP [dm6]	A	G	3.527e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	14102639	3L_14102639_SNP [dm3] 3L_14109539_SNP [dm6]	C	G	3.537e^-5	0.806	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	22844112	3L_22844112_SNP [dm3] 3L_22851012_SNP [dm6]	C	T	3.715e^-5	0.806	INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	19204995	3R_19204995_SNP [dm3] 3R_23379273_SNP [dm6]	A	G	3.778e^-5	0.806	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6828122	X_6828122_SNP [dm3] X_6934089_SNP [dm6]	C	G	3.854e^-5	0.806	INTRON CG14431
3R	6722870	3R_6722870_SNP [dm3] 3R_10897148_SNP [dm6]	G	A	3.998e^-5	0.806	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3L	11925572	3L_11925572_SNP [dm3] 3L_11932472_SNP [dm6]	T	G	4.152e^-5	0.806	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15333095	3R_15333095_SNP [dm3] 3R_19507373_SNP [dm6]	T	A	4.248e^-5	0.806	INTRON Dys
X	14748016	X_14748016_SNP [dm3] X_14853983_SNP [dm6]	C	A	4.261e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2L	5462385	2L_5462385_INS [dm3] 2L_5462385_INS [dm6]	T	TCTCGT	4.371e^-5	0.806	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	8097972	X_8097972_SNP [dm3] X_8203939_SNP [dm6]	G	A	4.442e^-5	0.806	INTRON sdt
3L	12503572	3L_12503572_SNP [dm3] 3L_12510472_SNP [dm6]	A	C	4.462e^-5	0.806	SYNONYMOUS_CODING sti
2L	5459601	2L_5459601_SNP [dm3] 2L_5459601_SNP [dm6]	T	C	4.505e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	6723042	3R_6723042_SNP [dm3] 3R_10897320_SNP [dm6]	T	G	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723062	3R_6723062_SNP [dm3] 3R_10897340_SNP [dm6]	A	T	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723105	3R_6723105_SNP [dm3] 3R_10897383_SNP [dm6]	G	A	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723117	3R_6723117_SNP [dm3] 3R_10897395_SNP [dm6]	C	A	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723422	3R_6723422_SNP [dm3] 3R_10897700_SNP [dm6]	G	C	4.579e^-5	0.806	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6725863	3R_6725863_SNP [dm3] 3R_10900141_SNP [dm6]	A	T	4.579e^-5	0.806	INTERGENIC
3R	6728775	3R_6728775_SNP [dm3] 3R_10903053_SNP [dm6]	C	T	4.579e^-5	0.806	INTERGENIC
3R	6734973	3R_6734973_SNP [dm3] 3R_10909251_SNP [dm6]	G	A	4.579e^-5	0.806	INTERGENIC
3R	6735382	3R_6735382_SNP [dm3] 3R_10909660_SNP [dm6]	C	A	4.579e^-5	0.806	INTERGENIC
3R	19655670	3R_19655670_SNP [dm3] 3R_23829948_SNP [dm6]	C	T	4.793e^-5	0.806	INTRON CG34355
X	9929877	X_9929877_SNP [dm3] X_10035844_SNP [dm6]	A	G	4.795e^-5	0.806	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12336300	X_12336300_SNP [dm3] X_12442267_SNP [dm6]	A	T	4.802e^-5	0.806	INTRON Pkcdelta
3R	6736381	3R_6736381_SNP [dm3] 3R_10910659_SNP [dm6]	T	C	4.840e^-5	0.806	INTERGENIC
X	17181219	X_17181219_SNP [dm3] X_17287186_SNP [dm6]	G	A	4.980e^-5	0.806	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
3R	6791097	3R_6791097_SNP [dm3] 3R_10965375_SNP [dm6]	A	G	5.065e^-5	0.806	INTERGENIC
2R	7266275	2R_7266275_SNP [dm3] 2R_11378770_SNP [dm6]	T	G	5.195e^-5	0.806	INTRON Tsp47F
3L	778267	3L_778267_SNP [dm3] 3L_778267_SNP [dm6]	C	T	5.257e^-5	0.806	INTERGENIC
3L	421598	3L_421598_SNP [dm3] 3L_421598_SNP [dm6]	T	C	5.325e^-5	0.806	INTERGENIC	TF binding site mE1_TFBS_sens
3L	22839638	3L_22839638_SNP [dm3] 3L_22846538_SNP [dm6]	G	C	5.350e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20377587	3R_20377587_SNP [dm3] 3R_24551865_SNP [dm6]	T	C	5.492e^-5	0.806	INTRON Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24200726	3R_24200726_SNP [dm3] 3R_28375004_SNP [dm6]	G	A	5.530e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8177294	2R_8177294_SNP [dm3] 2R_12289789_SNP [dm6]	T	C	5.668e^-5	0.806	UPSTREAM CG42700 INTRON CG42700
2R	8177295	2R_8177295_SNP [dm3] 2R_12289790_SNP [dm6]	T	C	5.668e^-5	0.806	UPSTREAM CG42700 INTRON CG42700
2R	6213515	2R_6213515_INS [dm3] 2R_10326010_INS [dm6]	T	TGT	5.706e^-5	0.806	INTRON CG42732
3L	11925809	3L_11925809_SNP [dm3] 3L_11932709_SNP [dm6]	A	G	5.809e^-5	0.806	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	5.853e^-5	0.806	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14170753	2R_14170753_SNP [dm3] 2R_18283248_SNP [dm6]	A	C	5.853e^-5	0.806	SPLICE_SITE_REGION sbb INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11937635	3L_11937635_SNP [dm3] 3L_11944535_SNP [dm6]	G	A	5.929e^-5	0.806	SYNONYMOUS_CODING CG5883
3L	5910770	3L_5910770_SNP [dm3] 3L_5917670_SNP [dm6]	C	A	5.989e^-5	0.806	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
X	12336260	X_12336260_SNP [dm3] X_12442227_SNP [dm6]	A	C	6.204e^-5	0.806	INTRON Pkcdelta
3R	17947127	3R_17947127_SNP [dm3] 3R_22121405_SNP [dm6]	C	G	6.227e^-5	0.806	INTRON CG42390
3L	4064248	3L_4064248_SNP [dm3] 3L_4064248_SNP [dm6]	A	T	6.267e^-5	0.806	UTR_3_PRIME dib & 1 other	TF binding site mE1_TFBS_cad
2R	8177177	2R_8177177_SNP [dm3] 2R_12289672_SNP [dm6]	A	G	6.275e^-5	0.806	INTRON CG42700
X	9095198	X_9095198_DEL [dm3] X_9201165_DEL [dm6]	TGTGAATAGCCATAACTATT...	T	6.281e^-5	0.806	INTRON su_r_
X	19399201	X_19399201_SNP [dm3] X_19505168_SNP [dm6]	A	G	6.401e^-5	0.806	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14748166	X_14748166_SNP [dm3] X_14854133_SNP [dm6]	G	T	6.468e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748179	X_14748179_SNP [dm3] X_14854146_SNP [dm6]	A	T	6.468e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748180	X_14748180_SNP [dm3] X_14854147_SNP [dm6]	C	T	6.468e^-5	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	4071675	2R_4071675_SNP [dm3] 2R_8184170_SNP [dm6]	G	A	6.543e^-5	0.806	INTRON LRP1
X	2908434	X_2908434_SNP [dm3] X_3014401_SNP [dm6]	G	A	6.550e^-5	0.806	INTRON kirre
X	12336171	X_12336171_DEL [dm3] X_12442138_DEL [dm6]	TAGTATGTTACAAAGAATTC...	T	6.617e^-5	0.806	INTRON Pkcdelta
3L	11359686	3L_11359686_SNP [dm3] 3L_11366586_SNP [dm6]	T	G	6.623e^-5	0.806	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
3L	3955833	3L_3955833_SNP [dm3] 3L_3955833_SNP [dm6]	T	C	6.688e^-5	0.806	UTR_3_PRIME CG12605
2R	15477633	2R_15477633_DEL [dm3] 2R_19590128_DEL [dm6]	TT	T	6.717e^-5	0.806	INTRON sm
3L	10194208	3L_10194208_SNP [dm3] 3L_10201108_SNP [dm6]	T	A	7.112e^-5	0.806	INTRON ect
3R	6735381	3R_6735381_SNP [dm3] 3R_10909659_SNP [dm6]	T	C	7.228e^-5	0.806	INTERGENIC
X	5483492	X_5483492_SNP [dm3] X_5589459_SNP [dm6]	G	A	7.230e^-5	0.806	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18083332	3L_18083332_SNP [dm3] 3L_18090232_SNP [dm6]	T	G	7.236e^-5	0.806	INTRON CG13698
2R	6622249	2R_6622249_INS [dm3] 2R_10734744_INS [dm6]	A	AA	7.351e^-5	0.806	UPSTREAM CG7220 INTRON CG7220
2R	6622252	2R_6622252_MNP [dm3] 2R_10734747_MNP [dm6]	TAC	GTA	7.351e^-5	0.806	UPSTREAM CG7220 INTRON CG7220
2R	6622259	2R_6622259_SNP [dm3] 2R_10734754_SNP [dm6]	C	G	7.351e^-5	0.806	UPSTREAM CG7220 INTRON CG7220
3L	7283453	3L_7283453_SNP [dm3] 3L_7290353_SNP [dm6]	C	A	7.507e^-5	0.806	INTRON unc-13-4A
3L	7283458	3L_7283458_SNP [dm3] 3L_7290358_SNP [dm6]	C	G	7.507e^-5	0.806	INTRON unc-13-4A
3L	7283515	3L_7283515_SNP [dm3] 3L_7290415_SNP [dm6]	A	C	7.507e^-5	0.806	INTRON unc-13-4A
2R	20098889	2R_20098889_SNP [dm3] 2R_24211366_SNP [dm6]	T	A	7.537e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17925407	2L_17925407_SNP [dm3] 2L_17925407_SNP [dm6]	T	G	7.617e^-5	0.806	INTERGENIC
X	19399342	X_19399342_SNP [dm3] X_19505309_SNP [dm6]	T	C	7.648e^-5	0.806	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	13840408	X_13840408_INS [dm3] X_13946375_INS [dm6]	A	AGAAA	7.858e^-5	0.806	INTRON mamo
2R	4262469	2R_4262469_SNP [dm3] 2R_8374964_SNP [dm6]	G	A	7.868e^-5	0.806	INTRON pdm3
3L	12344432	3L_12344432_SNP [dm3] 3L_12351332_SNP [dm6]	A	G	7.868e^-5	0.806	UTR_5_PRIME CrzR
3R	26077306	3R_26077306_SNP [dm3] 3R_30251584_SNP [dm6]	A	G	8.091e^-5	0.806	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	7282799	3L_7282799_SNP [dm3] 3L_7289699_SNP [dm6]	T	G	8.372e^-5	0.806	INTRON unc-13-4A
X	14746178	X_14746178_SNP [dm3] X_14852145_SNP [dm6]	A	C	8.509e^-5	0.806	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10915767	3R_10915767_DEL [dm3] 3R_15090045_DEL [dm6]	ATAGATTCAATTCTACA...	A	8.592e^-5	0.806	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8185395	2R_8185395_SNP [dm3] 2R_12297890_SNP [dm6]	A	C	8.736e^-5	0.806	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
X	14746199	X_14746199_SNP [dm3] X_14852166_SNP [dm6]	C	T	8.828e^-5	0.806	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12804929	2L_12804929_SNP [dm3] 2L_12804929_SNP [dm6]	C	T	8.900e^-5	0.806	INTERGENIC
3L	11752019	3L_11752019_SNP [dm3] 3L_11758919_SNP [dm6]	T	G	9.141e^-5	0.806	INTRON CG6024
X	12336255	X_12336255_SNP [dm3] X_12442222_SNP [dm6]	T	C	9.196e^-5	0.806	INTRON Pkcdelta
3L	8381900	3L_8381900_SNP [dm3] 3L_8388800_SNP [dm6]	G	C	9.208e^-5	0.806	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3L	8381971	3L_8381971_SNP [dm3] 3L_8388871_SNP [dm6]	G	A	9.208e^-5	0.806	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8382181	3L_8382181_SNP [dm3] 3L_8389081_SNP [dm6]	T	C	9.208e^-5	0.806	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
2R	9964048	2R_9964048_SNP [dm3] 2R_14076543_SNP [dm6]	A	G	9.476e^-5	0.806	INTRON Prosap
3R	22910302	3R_22910302_DEL [dm3] 3R_27084580_DEL [dm6]	TAATTGCACC	T	9.499e^-5	0.806	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
2R	6333423	2R_6333423_INS [dm3] 2R_10445918_INS [dm6]	T	TC	9.536e^-5	0.806	INTRON Galphao
3R	18700052	3R_18700052_SNP [dm3] 3R_22874330_SNP [dm6]	G	C	9.542e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2908522	X_2908522_SNP [dm3] X_3014489_SNP [dm6]	G	A	9.542e^-5	0.806	INTRON kirre
2R	10529806	2R_10529806_SNP [dm3] 2R_14642301_SNP [dm6]	T	C	9.636e^-5	0.806	INTERGENIC
3R	6725887	3R_6725887_DEL [dm3] 3R_10900165_DEL [dm6]	TTGGC	AA	9.686e^-5	0.806	INTERGENIC
3L	22847381	3L_22847381_SNP [dm3] 3L_22854281_SNP [dm6]	A	G	9.745e^-5	0.806	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426	transposable element FlyBase
2R	2060042	2R_2060042_SNP [dm3] 2R_6172537_SNP [dm6]	G	A	9.898e^-5	0.806	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	1.003e^-4	0.806	INTRON Eip75B
3R	26077305	3R_26077305_SNP [dm3] 3R_30251583_SNP [dm6]	A	T	1.011e^-4	0.806	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	11594864	3L_11594864_SNP [dm3] 3L_11601764_SNP [dm6]	T	C	1.021e^-4	0.806	INTRON CG7368
3L	2690504	3L_2690504_SNP [dm3] 3L_2690504_SNP [dm6]	T	G	1.025e^-4	0.806	INTRON Fife
3L	11822667	3L_11822667_SNP [dm3] 3L_11829567_SNP [dm6]	A	G	1.055e^-4	0.806	SPLICE_SITE_REGION CG7264 INTRON CycA & 1 other
3L	11822670	3L_11822670_SNP [dm3] 3L_11829570_SNP [dm6]	C	G	1.055e^-4	0.806	INTRON CycA & 1 other
3L	11822686	3L_11822686_SNP [dm3] 3L_11829586_SNP [dm6]	G	T	1.055e^-4	0.806	INTRON CycA & 1 other
3L	11822725	3L_11822725_SNP [dm3] 3L_11829625_SNP [dm6]	A	C	1.055e^-4	0.806	SYNONYMOUS_CODING CG7264 INTRON CycA
3L	22839245	3L_22839245_SNP [dm3] 3L_22846145_SNP [dm6]	C	T	1.068e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7283008	3L_7283008_SNP [dm3] 3L_7289908_SNP [dm6]	T	C	1.070e^-4	0.806	INTRON unc-13-4A
3L	7283447	3L_7283447_INS [dm3] 3L_7290347_INS [dm6]	T	TC	1.074e^-4	0.806	INTRON unc-13-4A
3L	7283450	3L_7283450_SNP [dm3] 3L_7290350_SNP [dm6]	A	C	1.074e^-4	0.806	INTRON unc-13-4A
3L	7283456	3L_7283456_SNP [dm3] 3L_7290356_SNP [dm6]	G	C	1.074e^-4	0.806	INTRON unc-13-4A
3L	7283466	3L_7283466_SNP [dm3] 3L_7290366_SNP [dm6]	T	A	1.074e^-4	0.806	INTRON unc-13-4A
3L	7283484	3L_7283484_SNP [dm3] 3L_7290384_SNP [dm6]	A	C	1.074e^-4	0.806	INTRON unc-13-4A
2R	8181198	2R_8181198_SNP [dm3] 2R_12293693_SNP [dm6]	C	T	1.077e^-4	0.806	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8181355	2R_8181355_DEL [dm3] 2R_12293850_DEL [dm6]	AG	A	1.077e^-4	0.806	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11925983	3L_11925983_SNP [dm3] 3L_11932883_SNP [dm6]	T	C	1.081e^-4	0.806	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20377526	3R_20377526_SNP [dm3] 3R_24551804_SNP [dm6]	T	C	1.082e^-4	0.806	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17925425	2L_17925425_SNP [dm3] 2L_17925425_SNP [dm6]	A	T	1.083e^-4	0.806	INTERGENIC
3L	18024845	3L_18024845_SNP [dm3] 3L_18031745_SNP [dm6]	G	C	1.085e^-4	0.806	INTRON Eip75B
3L	18024846	3L_18024846_SNP [dm3] 3L_18031746_SNP [dm6]	G	C	1.085e^-4	0.806	INTRON Eip75B
2R	12343717	2R_12343717_INS [dm3] 2R_16456212_INS [dm6]	T	TTTCTATGTCCGT...	1.095e^-4	0.806	INTERGENIC
2R	6575248	2R_6575248_SNP [dm3] 2R_10687743_SNP [dm6]	A	G	1.104e^-4	0.806	INTRON stan
2R	6575273	2R_6575273_SNP [dm3] 2R_10687768_SNP [dm6]	G	A	1.104e^-4	0.806	INTRON stan
2L	8168956	2L_8168956_SNP [dm3] 2L_8168956_SNP [dm6]	T	C	1.133e^-4	0.806	INTRON Piezo
2L	5522064	2L_5522064_SNP [dm3] 2L_5522064_SNP [dm6]	A	T	1.135e^-4	0.806	DOWNSTREAM cl INTRON CG7371
3R	13240068	3R_13240068_SNP [dm3] 3R_17414346_SNP [dm6]	T	A	1.147e^-4	0.806	DOWNSTREAM CG42821 INTRON CG42822
2R	14835543	2R_14835543_SNP [dm3] 2R_18948038_SNP [dm6]	G	A	1.152e^-4	0.806	INTRON sano
2R	6710694	2R_6710694_SNP [dm3] 2R_10823189_SNP [dm6]	G	C	1.164e^-4	0.806	SYNONYMOUS_CODING CG12343 UPSTREAM CG12325 DOWNSTREAM RpS15Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5910833	3L_5910833_SNP [dm3] 3L_5917733_SNP [dm6]	A	G	1.171e^-4	0.806	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3R	15338223	3R_15338223_INS [dm3] 3R_19512501_INS [dm6]	A	AC	1.173e^-4	0.806	INTRON Dys
3R	14130176	3R_14130176_SNP [dm3] 3R_18304454_SNP [dm6]	G	A	1.176e^-4	0.806	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13391110	2R_13391110_SNP [dm3] 2R_17503605_SNP [dm6]	G	A	1.185e^-4	0.806	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	22840552	3L_22840552_SNP [dm3] 3L_22847452_SNP [dm6]	C	T	1.210e^-4	0.806	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22840557	3L_22840557_SNP [dm3] 3L_22847457_SNP [dm6]	T	A	1.210e^-4	0.806	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12514085	3L_12514085_INS [dm3] 3L_12520985_INS [dm6]	C	CCTC	1.213e^-4	0.806	DOWNSTREAM Gcn5 & 1 other INTERGENIC
2L	3953437	2L_3953437_SNP [dm3] 2L_3953437_SNP [dm6]	C	T	1.219e^-4	0.806	INTRON fred
2R	16907159	2R_16907159_SNP [dm3] 2R_21019654_SNP [dm6]	T	G	1.229e^-4	0.806	INTRON RIC-3
3R	16355299	3R_16355299_SNP [dm3] 3R_20529577_SNP [dm6]	A	T	1.230e^-4	0.806	INTERGENIC
3L	7283508	3L_7283508_SNP [dm3] 3L_7290408_SNP [dm6]	A	T	1.231e^-4	0.806	INTRON unc-13-4A
X	14748377	X_14748377_SNP [dm3] X_14854344_SNP [dm6]	T	C	1.232e^-4	0.806	UTR_3_PRIME CG9519 INTRON Flo2
3L	8381886	3L_8381886_SNP [dm3] 3L_8388786_SNP [dm6]	T	A	1.251e^-4	0.806	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3L	10194155	3L_10194155_SNP [dm3] 3L_10201055_SNP [dm6]	G	C	1.252e^-4	0.806	INTRON ect
X	14747941	X_14747941_SNP [dm3] X_14853908_SNP [dm6]	T	A	1.260e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	7283452	3L_7283452_SNP [dm3] 3L_7290352_SNP [dm6]	G	T	1.263e^-4	0.806	INTRON unc-13-4A
X	14747757	X_14747757_SNP [dm3] X_14853724_SNP [dm6]	T	C	1.292e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	7282906	3L_7282906_SNP [dm3] 3L_7289806_SNP [dm6]	T	C	1.302e^-4	0.806	INTRON unc-13-4A
2R	15472253	2R_15472253_DEL [dm3] 2R_19584748_DEL [dm6]	ATTTGAGAATATA...	A	1.332e^-4	0.806	INTRON sm
2L	4767526	2L_4767526_SNP [dm3] 2L_4767526_SNP [dm6]	T	C	1.334e^-4	0.806	INTRON CG15630
3R	18555623	3R_18555623_SNP [dm3] 3R_22729901_SNP [dm6]	A	C	1.338e^-4	0.806	INTRON CG45049
X	7576375	X_7576375_SNP [dm3] X_7682342_SNP [dm6]	G	A	1.357e^-4	0.806	UTR_3_PRIME CHES-1-like
3L	7283488	3L_7283488_SNP [dm3] 3L_7290388_SNP [dm6]	G	A	1.362e^-4	0.806	INTRON unc-13-4A
3L	11926621	3L_11926621_SNP [dm3] 3L_11933521_SNP [dm6]	C	G	1.381e^-4	0.806	SPLICE_SITE_REGION byn INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18564446	3R_18564446_SNP [dm3] 3R_22738724_SNP [dm6]	A	G	1.388e^-4	0.806	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18564461	3R_18564461_SNP [dm3] 3R_22738739_SNP [dm6]	C	T	1.388e^-4	0.806	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10454474	2R_10454474_SNP [dm3] 2R_14566969_SNP [dm6]	A	G	1.391e^-4	0.806	INTRON ttv
2R	9824417	2R_9824417_SNP [dm3] 2R_13936912_SNP [dm6]	A	C	1.393e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4798043	X_4798043_SNP [dm3] X_4904010_SNP [dm6]	T	C	1.401e^-4	0.806	SYNONYMOUS_CODING CG42594
2R	17926749	2R_17926749_SNP [dm3] 2R_22039244_SNP [dm6]	A	G	1.414e^-4	0.806	INTRON CG34370
3R	15338294	3R_15338294_SNP [dm3] 3R_19512572_SNP [dm6]	A	C	1.427e^-4	0.806	INTRON Dys
3L	11928369	3L_11928369_SNP [dm3] 3L_11935269_SNP [dm6]	T	C	1.431e^-4	0.806	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5722756	2L_5722756_SNP [dm3] 2L_5722756_SNP [dm6]	T	G	1.439e^-4	0.806	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16752705	3L_16752705_SNP [dm3] 3L_16759605_SNP [dm6]	G	T	1.456e^-4	0.806	INTERGENIC
2L	10639049	2L_10639049_SNP [dm3] 2L_10639049_SNP [dm6]	C	T	1.462e^-4	0.806	UPSTREAM CG7329 & 1 other EXON CR45351
2L	4305613	2L_4305613_SNP [dm3] 2L_4305613_SNP [dm6]	T	C	1.464e^-4	0.806	UTR_3_PRIME tutl INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8809486	2R_8809486_SNP [dm3] 2R_12921981_SNP [dm6]	C	T	1.479e^-4	0.806	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17170009	X_17170009_SNP [dm3] X_17275976_SNP [dm6]	T	A	1.486e^-4	0.806	INTRON f
3L	5246175	3L_5246175_SNP [dm3] 3L_5253075_SNP [dm6]	G	C	1.493e^-4	0.806	INTRON shep
2R	8185808	2R_8185808_SNP [dm3] 2R_12298303_SNP [dm6]	C	A	1.501e^-4	0.806	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
2R	8185809	2R_8185809_SNP [dm3] 2R_12298304_SNP [dm6]	T	A	1.501e^-4	0.806	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
2L	3959278	2L_3959278_SNP [dm3] 2L_3959278_SNP [dm6]	G	T	1.511e^-4	0.806	INTRON fred
3R	17940171	3R_17940171_SNP [dm3] 3R_22114449_SNP [dm6]	C	A	1.541e^-4	0.806	SYNONYMOUS_CODING Ir94a
2L	14010952	2L_14010952_SNP [dm3] 2L_14010952_SNP [dm6]	T	C	1.558e^-4	0.806	UPSTREAM tRNA:Q:34E INTERGENIC
2L	2854889	2L_2854889_SNP [dm3] 2L_2854889_SNP [dm6]	G	T	1.564e^-4	0.806	UTR_5_PRIME CG3104 INTRON CG3104
3L	12493776	3L_12493776_SNP [dm3] 3L_12500676_SNP [dm6]	G	C	1.564e^-4	0.806	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15543773	X_15543773_SNP [dm3] X_15649740_SNP [dm6]	T	C	1.564e^-4	0.806	INTERGENIC
3L	18144818	3L_18144818_SNP [dm3] 3L_18151718_SNP [dm6]	T	G	1.564e^-4	0.806	INTRON CG7330
2L	11722222	2L_11722222_SNP [dm3] 2L_11722222_SNP [dm6]	A	T	1.566e^-4	0.806	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
X	14748028	X_14748028_SNP [dm3] X_14853995_SNP [dm6]	G	T	1.567e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	15338097	3R_15338097_SNP [dm3] 3R_19512375_SNP [dm6]	C	A	1.577e^-4	0.806	INTRON Dys
3R	15338101	3R_15338101_SNP [dm3] 3R_19512379_SNP [dm6]	A	T	1.577e^-4	0.806	INTRON Dys
3R	15338117	3R_15338117_SNP [dm3] 3R_19512395_SNP [dm6]	T	G	1.577e^-4	0.806	INTRON Dys
X	14747991	X_14747991_SNP [dm3] X_14853958_SNP [dm6]	T	C	1.582e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	12349774	3L_12349774_DEL [dm3] 3L_12356674_DEL [dm6]	TT	C	1.599e^-4	0.806	INTERGENIC
X	12439349	X_12439349_SNP [dm3] X_12545316_SNP [dm6]	A	G	1.605e^-4	0.806	INTRON CG43921
2L	19295211	2L_19295211_SNP [dm3] 2L_19295211_SNP [dm6]	A	G	1.614e^-4	0.806	INTERGENIC
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	1.615e^-4	0.806	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	15309269	3R_15309269_SNP [dm3] 3R_19483547_SNP [dm6]	C	T	1.623e^-4	0.806	INTRON Dys
3L	6390321	3L_6390321_SNP [dm3] 3L_6397221_SNP [dm6]	T	A	1.634e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15370182	3R_15370182_SNP [dm3] 3R_19544460_SNP [dm6]	T	A	1.636e^-4	0.806	INTRON Dys
2R	8176053	2R_8176053_SNP [dm3] 2R_12288548_SNP [dm6]	G	T	1.660e^-4	0.806	INTRON CG42700
3L	7283444	3L_7283444_SNP [dm3] 3L_7290344_SNP [dm6]	T	C	1.664e^-4	0.806	INTRON unc-13-4A
3L	11350537	3L_11350537_SNP [dm3] 3L_11357437_SNP [dm6]	T	A	1.676e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25937248	3R_25937248_SNP [dm3] 3R_30111526_SNP [dm6]	A	T	1.676e^-4	0.806	INTRON sima
3L	9793534	3L_9793534_SNP [dm3] 3L_9800434_SNP [dm6]	C	G	1.680e^-4	0.806	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
2R	18074793	2R_18074793_SNP [dm3] 2R_22187288_SNP [dm6]	C	G	1.687e^-4	0.806	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8186438	2R_8186438_SNP [dm3] 2R_12298933_SNP [dm6]	T	C	1.690e^-4	0.806	SYNONYMOUS_STOP CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3L	11937643	3L_11937643_SNP [dm3] 3L_11944543_SNP [dm6]	T	A	1.701e^-4	0.806	NON_SYNONYMOUS_CODING CG5883
3L	11938277	3L_11938277_SNP [dm3] 3L_11945177_SNP [dm6]	A	C	1.701e^-4	0.806	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
2R	17297680	2R_17297680_SNP [dm3] 2R_21410175_SNP [dm6]	A	C	1.703e^-4	0.806	INTRON Sdc
2L	16380574	2L_16380574_INS [dm3] 2L_16380574_INS [dm6]	A	ATGGTCA	1.708e^-4	0.806	INTERGENIC
2R	8181982	2R_8181982_DEL [dm3] 2R_12294477_DEL [dm6]	CCCAATATTT	C	1.715e^-4	0.806	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18352830	2L_18352830_DEL [dm3] 2L_18352830_DEL [dm6]	ACGCC	TT	1.724e^-4	0.806	INTRON Fas3
X	18138453	X_18138453_SNP [dm3] X_18244420_SNP [dm6]	C	G	1.739e^-4	0.806	DOWNSTREAM CR45607 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11702385	3R_11702385_SNP [dm3] 3R_15876663_SNP [dm6]	A	G	1.752e^-4	0.806	UPSTREAM CG31183 INTERGENIC
3L	18029073	3L_18029073_SNP [dm3] 3L_18035973_SNP [dm6]	G	A	1.763e^-4	0.806	INTRON Eip75B
2R	2024692	2R_2024692_SNP [dm3] 2R_6137187_SNP [dm6]	T	A	1.765e^-4	0.806	UPSTREAM CG14589 INTRON EcR
3L	11937662	3L_11937662_SNP [dm3] 3L_11944562_SNP [dm6]	G	A	1.770e^-4	0.806	SYNONYMOUS_CODING CG5883
3R	6733147	3R_6733147_SNP [dm3] 3R_10907425_SNP [dm6]	G	A	1.797e^-4	0.806	INTERGENIC
X	2565606	X_2565606_SNP [dm3] X_2671573_SNP [dm6]	T	C	1.814e^-4	0.806	INTRON sgg
2L	3789537	2L_3789537_SNP [dm3] 2L_3789537_SNP [dm6]	C	T	1.816e^-4	0.806	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3447033	3R_3447033_DEL [dm3] 3R_7621311_DEL [dm6]	CC	C	1.837e^-4	0.806	INTRON CG34127
2R	6621696	2R_6621696_SNP [dm3] 2R_10734191_SNP [dm6]	A	G	1.839e^-4	0.806	INTRON CG7220
3R	19224292	3R_19224292_DEL [dm3] 3R_23398570_DEL [dm6]	AATGCCACTA	A	1.840e^-4	0.806	DOWNSTREAM CR44323 INTERGENIC
3R	25965356	3R_25965356_SNP [dm3] 3R_30139634_SNP [dm6]	A	G	1.844e^-4	0.806	INTRON AdoR
2R	8176245	2R_8176245_SNP [dm3] 2R_12288740_SNP [dm6]	A	G	1.854e^-4	0.806	INTRON CG42700
3L	12069108	3L_12069108_INS [dm3] 3L_12076008_INS [dm6]	G	GCAGTTG	1.872e^-4	0.806	INTRON Sema-5c
3R	26099225	3R_26099225_SNP [dm3] 3R_30273503_SNP [dm6]	C	G	1.889e^-4	0.806	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	10328503	3R_10328503_SNP [dm3] 3R_14502781_SNP [dm6]	A	G	1.895e^-4	0.806	INTRON CR44177
2L	16629200	2L_16629200_SNP [dm3] 2L_16629200_SNP [dm6]	A	T	1.900e^-4	0.806	UPSTREAM CR44151 INTRON CG42389
3L	14762448	3L_14762448_SNP [dm3] 3L_14769348_SNP [dm6]	A	T	1.906e^-4	0.806	UTR_3_PRIME mop UPSTREAM CG17173
3R	15337994	3R_15337994_SNP [dm3] 3R_19512272_SNP [dm6]	G	C	1.906e^-4	0.806	INTRON Dys
3R	6849806	3R_6849806_SNP [dm3] 3R_11024084_SNP [dm6]	T	G	1.917e^-4	0.806	INTRON CG34114
2R	8189781	2R_8189781_DEL [dm3] 2R_12302276_DEL [dm6]	GAATCCACGCAGCGG...	G	1.930e^-4	0.806	UPSTREAM CG8850 DOWNSTREAM SIP2 INTERGENIC
2R	11082510	2R_11082510_SNP [dm3] 2R_15195005_SNP [dm6]	T	G	1.945e^-4	0.806	UPSTREAM CG43829 INTERGENIC
3R	15338318	3R_15338318_SNP [dm3] 3R_19512596_SNP [dm6]	C	T	1.954e^-4	0.806	INTRON Dys
3R	10412967	3R_10412967_SNP [dm3] 3R_14587245_SNP [dm6]	C	G	1.982e^-4	0.806	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8181351	2R_8181351_INS [dm3] 2R_12293846_INS [dm6]	T	TAAA	1.986e^-4	0.806	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7758036	X_7758036_SNP [dm3] X_7864003_SNP [dm6]	G	A	1.990e^-4	0.806	DOWNSTREAM Ir7b INTERGENIC
3R	11901421	3R_11901421_SNP [dm3] 3R_16075699_SNP [dm6]	T	C	1.998e^-4	0.806	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7210677	2L_7210677_SNP [dm3] 2L_7210677_SNP [dm6]	A	G	2.000e^-4	0.806	INTRON CG13784
3R	15334321	3R_15334321_SNP [dm3] 3R_19508599_SNP [dm6]	G	T	2.013e^-4	0.806	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3L	22539300	3L_22539300_SNP [dm3] 3L_22546200_SNP [dm6]	G	A	2.013e^-4	0.806	INTERGENIC
X	14747963	X_14747963_SNP [dm3] X_14853930_SNP [dm6]	A	T	2.043e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	9824387	2R_9824387_SNP [dm3] 2R_13936882_SNP [dm6]	G	A	2.046e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18066714	2L_18066714_SNP [dm3] 2L_18066714_SNP [dm6]	C	T	2.050e^-4	0.806	INTRON rdo
X	15677814	X_15677814_INS [dm3] X_15783781_INS [dm6]	T	TT	2.059e^-4	0.806	UPSTREAM Efhc1.1 DOWNSTREAM Paf-AHalpha INTERGENIC
3L	11596173	3L_11596173_SNP [dm3] 3L_11603073_SNP [dm6]	A	G	2.064e^-4	0.806	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	5462422	2L_5462422_SNP [dm3] 2L_5462422_SNP [dm6]	T	A	2.065e^-4	0.806	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	1071495	2R_1071495_SNP [dm3] 2R_5183990_SNP [dm6]	G	A	2.082e^-4	0.806	INTRON Nipped-A	TF binding site mE1_TFBS_zfh1
2L	15457235	2L_15457235_SNP [dm3] 2L_15457235_SNP [dm6]	G	A	2.087e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15457242	2L_15457242_SNP [dm3] 2L_15457242_SNP [dm6]	G	A	2.087e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15457244	2L_15457244_INS [dm3] 2L_15457244_INS [dm6]	T	CAC	2.087e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15338192	3R_15338192_SNP [dm3] 3R_19512470_SNP [dm6]	T	A	2.095e^-4	0.806	INTRON Dys
3L	19917475	3L_19917475_SNP [dm3] 3L_19924375_SNP [dm6]	A	G	2.118e^-4	0.806	UTR_3_PRIME CG7770 UPSTREAM Su_z_12 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12074623	2L_12074623_SNP [dm3] 2L_12074623_SNP [dm6]	C	G	2.137e^-4	0.806	INTERGENIC
X	6528322	X_6528322_SNP [dm3] X_6634289_SNP [dm6]	A	T	2.141e^-4	0.806	NON_SYNONYMOUS_CODING CG14443 INTRON pigs
2L	4761647	2L_4761647_SNP [dm3] 2L_4761647_SNP [dm6]	A	T	2.164e^-4	0.806	INTRON CG15630
2R	6435578	2R_6435578_SNP [dm3] 2R_10548073_SNP [dm6]	G	A	2.180e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8182051	2R_8182051_SNP [dm3] 2R_12294546_SNP [dm6]	A	G	2.186e^-4	0.806	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15181028	2L_15181028_SNP [dm3] 2L_15181028_SNP [dm6]	C	A	2.187e^-4	0.806	INTRON CG4168
2L	17898583	2L_17898583_SNP [dm3] 2L_17898583_SNP [dm6]	C	T	2.187e^-4	0.806	INTERGENIC
2L	20790858	2L_20790858_SNP [dm3] 2L_20790858_SNP [dm6]	A	G	2.187e^-4	0.806	INTRON vari
2L	20792023	2L_20792023_SNP [dm3] 2L_20792023_SNP [dm6]	C	A	2.187e^-4	0.806	INTRON vari	TF binding site mE1_TFBS_Trl
2R	19557347	2R_19557347_SNP [dm3] 2R_23669824_SNP [dm6]	C	T	2.187e^-4	0.806	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19557351	2R_19557351_SNP [dm3] 2R_23669828_SNP [dm6]	T	G	2.187e^-4	0.806	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5518274	2R_5518274_SNP [dm3] 2R_9630769_SNP [dm6]	C	G	2.187e^-4	0.806	INTRON Mmp2
3L	11186850	3L_11186850_SNP [dm3] 3L_11193750_SNP [dm6]	C	T	2.187e^-4	0.806	INTRON GlcAT-P
3L	11351583	3L_11351583_SNP [dm3] 3L_11358483_SNP [dm6]	C	A	2.187e^-4	0.806	INTERGENIC
3R	15338037	3R_15338037_SNP [dm3] 3R_19512315_SNP [dm6]	A	C	2.187e^-4	0.806	INTRON Dys
2L	11185661	2L_11185661_SNP [dm3] 2L_11185661_SNP [dm6]	G	A	2.188e^-4	0.806	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8287437	2R_8287437_SNP [dm3] 2R_12399932_SNP [dm6]	C	T	2.195e^-4	0.806	DOWNSTREAM CG30048 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14746220	X_14746220_SNP [dm3] X_14852187_SNP [dm6]	C	G	2.206e^-4	0.806	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14746250	X_14746250_SNP [dm3] X_14852217_SNP [dm6]	T	C	2.206e^-4	0.806	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3003793	X_3003793_SNP [dm3] X_3109760_SNP [dm6]	C	T	2.218e^-4	0.806	INTRON kirre
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	2.263e^-4	0.806	INTRON rdo
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	2.269e^-4	0.806	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
2R	8887247	2R_8887247_SNP [dm3] 2R_12999742_SNP [dm6]	A	G	2.270e^-4	0.806	INTRON Su_z_2	TF binding site mE1_TFBS_HSA
X	20497405	X_20497405_DEL [dm3] X_20626378_DEL [dm6]	AATTGTTATTA...	A	2.295e^-4	0.806	INTERGENIC
2L	17645227	2L_17645227_SNP [dm3] 2L_17645227_SNP [dm6]	A	G	2.300e^-4	0.806	UPSTREAM CR45699 INTERGENIC
2L	3831138	2L_3831138_SNP [dm3] 2L_3831138_SNP [dm6]	T	A	2.313e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16990629	2L_16990629_SNP [dm3] 2L_16990629_SNP [dm6]	A	G	2.318e^-4	0.806	INTRON beat-IIIb
2L	16990636	2L_16990636_SNP [dm3] 2L_16990636_SNP [dm6]	T	A	2.318e^-4	0.806	INTRON beat-IIIb
2L	5726726	2L_5726726_SNP [dm3] 2L_5726726_SNP [dm6]	C	G	2.323e^-4	0.806	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11102771	3L_11102771_SNP [dm3] 3L_11109671_SNP [dm6]	G	T	2.332e^-4	0.806	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22801529	3R_22801529_SNP [dm3] 3R_26975807_SNP [dm6]	C	A	2.336e^-4	0.806	SYNONYMOUS_CODING CG5521
3L	7283399	3L_7283399_SNP [dm3] 3L_7290299_SNP [dm6]	T	A	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283407	3L_7283407_SNP [dm3] 3L_7290307_SNP [dm6]	T	A	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283408	3L_7283408_SNP [dm3] 3L_7290308_SNP [dm6]	A	T	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283410	3L_7283410_SNP [dm3] 3L_7290310_SNP [dm6]	C	T	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283415	3L_7283415_SNP [dm3] 3L_7290315_SNP [dm6]	T	A	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283436	3L_7283436_SNP [dm3] 3L_7290336_SNP [dm6]	A	C	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283437	3L_7283437_SNP [dm3] 3L_7290337_SNP [dm6]	A	C	2.339e^-4	0.806	INTRON unc-13-4A
3L	7283439	3L_7283439_DEL [dm3] 3L_7290339_DEL [dm6]	TAAA	T	2.339e^-4	0.806	INTRON unc-13-4A
2R	8190945	2R_8190945_SNP [dm3] 2R_12303440_SNP [dm6]	C	T	2.346e^-4	0.806	UTR_3_PRIME SIP2 INTRON SIP2
2R	8193923	2R_8193923_SNP [dm3] 2R_12306418_SNP [dm6]	G	A	2.346e^-4	0.806	UPSTREAM CG17739 & 1 other INTERGENIC
2R	18074670	2R_18074670_SNP [dm3] 2R_22187165_SNP [dm6]	C	A	2.347e^-4	0.806	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	2.361e^-4	0.806	INTRON Eip75B
X	12565538	X_12565538_SNP [dm3] X_12671505_SNP [dm6]	C	T	2.363e^-4	0.806	INTRON Tis11
3R	26673849	3R_26673849_SNP [dm3] 3R_30848127_SNP [dm6]	A	G	2.376e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs
2L	3953434	2L_3953434_SNP [dm3] 2L_3953434_SNP [dm6]	C	A	2.377e^-4	0.806	INTRON fred
3R	6722197	3R_6722197_INS [dm3] 3R_10896475_INS [dm6]	G	GG	2.378e^-4	0.806	DOWNSTREAM CR45577 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	11625440	3L_11625440_SNP [dm3] 3L_11632340_SNP [dm6]	C	T	2.388e^-4	0.806	DOWNSTREAM CR45158 INTRON CG32091
X	5203942	X_5203942_SNP [dm3] X_5309909_SNP [dm6]	G	A	2.388e^-4	0.806	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	2.390e^-4	0.806	INTRON nAChRalpha3
2L	4767523	2L_4767523_SNP [dm3] 2L_4767523_SNP [dm6]	T	C	2.393e^-4	0.806	INTRON CG15630
2R	16168199	2R_16168199_SNP [dm3] 2R_20280694_SNP [dm6]	A	C	2.396e^-4	0.806	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	11754680	2R_11754680_SNP [dm3] 2R_15867175_SNP [dm6]	A	C	2.397e^-4	0.806	NON_SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19533160	3R_19533160_SNP [dm3] 3R_23707438_SNP [dm6]	T	C	2.406e^-4	0.806	UPSTREAM CR44052 INTRON CG31414
2L	8977461	2L_8977461_SNP [dm3] 2L_8977461_SNP [dm6]	C	T	2.412e^-4	0.806	DOWNSTREAM CG13101 INTERGENIC
2R	6339283	2R_6339283_SNP [dm3] 2R_10451778_SNP [dm6]	G	A	2.414e^-4	0.806	INTRON Galphao & 1 other
2L	9301143	2L_9301143_SNP [dm3] 2L_9301143_SNP [dm6]	T	C	2.428e^-4	0.806	UTR_3_PRIME Ggamma30A
X	14744343	X_14744343_SNP [dm3] X_14850310_SNP [dm6]	G	A	2.429e^-4	0.806	DOWNSTREAM CG9521 INTRON Flo2
2L	4755653	2L_4755653_SNP [dm3] 2L_4755653_SNP [dm6]	G	A	2.437e^-4	0.806	INTRON CG15630
3R	11901483	3R_11901483_SNP [dm3] 3R_16075761_SNP [dm6]	C	G	2.444e^-4	0.806	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3895291	2L_3895291_SNP [dm3] 2L_3895291_SNP [dm6]	G	C	2.479e^-4	0.806	INTRON capu
2L	4448218	2L_4448218_SNP [dm3] 2L_4448218_SNP [dm6]	T	C	2.479e^-4	0.806	SYNONYMOUS_CODING MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	4761301	2L_4761301_SNP [dm3] 2L_4761301_SNP [dm6]	C	T	2.479e^-4	0.806	INTRON CG15630
2L	5001821	2L_5001821_SNP [dm3] 2L_5001821_SNP [dm6]	T	G	2.479e^-4	0.806	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	5670849	2L_5670849_SNP [dm3] 2L_5670849_SNP [dm6]	G	T	2.479e^-4	0.806	DOWNSTREAM Hsp60C INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12414436	2R_12414436_SNP [dm3] 2R_16526931_SNP [dm6]	A	G	2.491e^-4	0.806	INTRON Sema-2a
X	14088719	X_14088719_SNP [dm3] X_14194686_SNP [dm6]	G	A	2.494e^-4	0.806	NON_SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12557176	3L_12557176_SNP [dm3] 3L_12564076_SNP [dm6]	T	C	2.495e^-4	0.806	INTRON sowah
3L	1456057	3L_1456057_SNP [dm3] 3L_1456057_SNP [dm6]	G	A	2.504e^-4	0.806	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17940176	3R_17940176_SNP [dm3] 3R_22114454_SNP [dm6]	T	G	2.508e^-4	0.806	NON_SYNONYMOUS_CODING Ir94a
3R	15154020	3R_15154020_SNP [dm3] 3R_19328298_SNP [dm6]	A	G	2.523e^-4	0.806	UPSTREAM CR44175 INTERGENIC
3L	1460659	3L_1460659_SNP [dm3] 3L_1460659_SNP [dm6]	C	A	2.532e^-4	0.806	DOWNSTREAM CR44842 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	2.551e^-4	0.806	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3R	25463402	3R_25463402_INS [dm3] 3R_29637680_INS [dm6]	G	GTACTT	2.561e^-4	0.806	INTRON Dop1R2
3R	25463407	3R_25463407_SNP [dm3] 3R_29637685_SNP [dm6]	G	A	2.561e^-4	0.806	INTRON Dop1R2
3L	7614314	3L_7614314_SNP [dm3] 3L_7621214_SNP [dm6]	C	T	2.568e^-4	0.806	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2527168	2L_2527168_SNP [dm3] 2L_2527168_SNP [dm6]	C	T	2.586e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	2.595e^-4	0.806	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14957982	2R_14957982_SNP [dm3] 2R_19070477_SNP [dm6]	G	A	2.610e^-4	0.806	INTRON 5-HT1A
2R	9379903	2R_9379903_SNP [dm3] 2R_13492398_SNP [dm6]	C	T	2.618e^-4	0.806	INTRON bbc
3R	23669842	3R_23669842_SNP [dm3] 3R_27844120_SNP [dm6]	C	A	2.634e^-4	0.806	UPSTREAM Or98P INTRON CG34353
X	11704754	X_11704754_SNP [dm3] X_11810721_SNP [dm6]	G	A	2.636e^-4	0.806	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18353146	2L_18353146_SNP [dm3] 2L_18353146_SNP [dm6]	T	A	2.638e^-4	0.806	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
3L	11598825	3L_11598825_DEL [dm3] 3L_11605725_DEL [dm6]	AA	A	2.646e^-4	0.806	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
2L	17990839	2L_17990839_SNP [dm3] 2L_17990839_SNP [dm6]	G	C	2.648e^-4	0.806	NON_SYNONYMOUS_CODING Prosbeta5R2
X	14537149	X_14537149_SNP [dm3] X_14643116_SNP [dm6]	A	T	2.656e^-4	0.806	INTRON NetA
2L	6471488	2L_6471488_SNP [dm3] 2L_6471488_SNP [dm6]	C	T	2.656e^-4	0.806	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11195984	3L_11195984_SNP [dm3] 3L_11202884_SNP [dm6]	T	C	2.663e^-4	0.806	DOWNSTREAM CG14141 INTRON Plod
3L	9512810	3L_9512810_SNP [dm3] 3L_9519710_SNP [dm6]	T	C	2.665e^-4	0.806	INTRON CG33700
3L	18338163	3L_18338163_SNP [dm3] 3L_18345063_SNP [dm6]	T	C	2.674e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	11351594	3L_11351594_SNP [dm3] 3L_11358494_SNP [dm6]	T	A	2.678e^-4	0.806	INTERGENIC
2L	15457218	2L_15457218_INS [dm3] 2L_15457218_INS [dm6]	T	TCTGCAGGGAAAAAA...	2.684e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12584604	3L_12584604_INS [dm3] 3L_12591504_INS [dm6]	A	ATTTTTTTTTTAG...	2.688e^-4	0.806	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10194146	3L_10194146_SNP [dm3] 3L_10201046_SNP [dm6]	T	G	2.699e^-4	0.806	INTRON ect
3R	9781811	3R_9781811_SNP [dm3] 3R_13956089_SNP [dm6]	A	T	2.704e^-4	0.806	INTERGENIC
3L	4534033	3L_4534033_SNP [dm3] 3L_4534033_SNP [dm6]	C	A	2.706e^-4	0.806	INTRON CG11353
2L	20791136	2L_20791136_SNP [dm3] 2L_20791136_SNP [dm6]	G	T	2.706e^-4	0.806	INTRON vari
2R	5518137	2R_5518137_SNP [dm3] 2R_9630632_SNP [dm6]	T	C	2.706e^-4	0.806	INTRON Mmp2
3L	7724963	3L_7724963_SNP [dm3] 3L_7731863_SNP [dm6]	G	T	2.706e^-4	0.806	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	5687954	X_5687954_SNP [dm3] X_5793921_SNP [dm6]	C	A	2.706e^-4	0.806	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5688107	X_5688107_SNP [dm3] X_5794074_SNP [dm6]	G	A	2.706e^-4	0.806	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2L	5462501	2L_5462501_SNP [dm3] 2L_5462501_SNP [dm6]	T	C	2.715e^-4	0.806	INTRON mid	TF binding site BDTNP1_TFBS_dl
2L	6902704	2L_6902704_SNP [dm3] 2L_6902704_SNP [dm6]	T	C	2.715e^-4	0.806	DOWNSTREAM mir-932 INTRON Nlg2
2L	6902712	2L_6902712_SNP [dm3] 2L_6902712_SNP [dm6]	C	A	2.715e^-4	0.806	DOWNSTREAM mir-932 INTRON Nlg2
2L	7114060	2L_7114060_SNP [dm3] 2L_7114060_SNP [dm6]	T	A	2.722e^-4	0.806	INTRON Pvf3
3L	6390103	3L_6390103_SNP [dm3] 3L_6397003_SNP [dm6]	T	A	2.733e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	2024617	2R_2024617_INS [dm3] 2R_6137112_INS [dm6]	T	TTAT	2.756e^-4	0.806	UPSTREAM CG14589 INTRON EcR
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	2.760e^-4	0.806	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4754929	2L_4754929_INS [dm3] 2L_4754929_INS [dm6]	A	ATCA	2.767e^-4	0.806	INTRON CG15630
3L	11148755	3L_11148755_SNP [dm3] 3L_11155655_SNP [dm6]	A	G	2.768e^-4	0.806	INTRON CG32082
2R	10454875	2R_10454875_SNP [dm3] 2R_14567370_SNP [dm6]	T	C	2.769e^-4	0.806	INTRON ttv
2R	14179180	2R_14179180_INS [dm3] 2R_18291675_INS [dm6]	T	TCT	2.772e^-4	0.806	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10385441	X_10385441_SNP [dm3] X_10491408_SNP [dm6]	G	C	2.778e^-4	0.806	INTRON spri
2R	18593248	2R_18593248_SNP [dm3] 2R_22705743_SNP [dm6]	C	A	2.784e^-4	0.806	DOWNSTREAM Obp58c & 1 other INTERGENIC
2L	11685574	2L_11685574_SNP [dm3] 2L_11685574_SNP [dm6]	G	A	2.785e^-4	0.806	INTERGENIC
2L	4726265	2L_4726265_SNP [dm3] 2L_4726265_SNP [dm6]	A	T	2.787e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4764957	2L_4764957_SNP [dm3] 2L_4764957_SNP [dm6]	T	C	2.787e^-4	0.806	INTRON CG15630
3L	2690491	3L_2690491_SNP [dm3] 3L_2690491_SNP [dm6]	T	C	2.788e^-4	0.806	INTRON Fife
X	22138457	X_22138457_SNP [dm3] X_22736621_SNP [dm6]	C	G	2.799e^-4	0.806	INTRON CR44997
2L	4761651	2L_4761651_SNP [dm3] 2L_4761651_SNP [dm6]	C	T	2.801e^-4	0.806	INTRON CG15630
2L	4761695	2L_4761695_SNP [dm3] 2L_4761695_SNP [dm6]	A	T	2.801e^-4	0.806	INTRON CG15630
2L	4988154	2L_4988154_SNP [dm3] 2L_4988154_SNP [dm6]	T	A	2.815e^-4	0.806	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17677940	2R_17677940_SNP [dm3] 2R_21790435_SNP [dm6]	C	G	2.851e^-4	0.806	SYNONYMOUS_CODING lox2
3L	11536453	3L_11536453_SNP [dm3] 3L_11543353_SNP [dm6]	C	G	2.862e^-4	0.806	INTRON Mob2
3L	11536456	3L_11536456_SNP [dm3] 3L_11543356_SNP [dm6]	T	A	2.862e^-4	0.806	INTRON Mob2
X	14246155	X_14246155_SNP [dm3] X_14352122_SNP [dm6]	T	C	2.866e^-4	0.806	INTRON dpr8
3R	6733905	3R_6733905_SNP [dm3] 3R_10908183_SNP [dm6]	C	A	2.866e^-4	0.806	INTERGENIC
3R	15334367	3R_15334367_SNP [dm3] 3R_19508645_SNP [dm6]	T	A	2.888e^-4	0.806	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17984609	2L_17984609_SNP [dm3] 2L_17984609_SNP [dm6]	T	C	2.895e^-4	0.806	INTERGENIC
2L	4750336	2L_4750336_INS [dm3] 2L_4750336_INS [dm6]	C	GTTGCAACACACT...	2.897e^-4	0.806	INTRON CG15630
3L	14331829	3L_14331829_SNP [dm3] 3L_14338729_SNP [dm6]	A	C	2.899e^-4	0.806	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12495929	3L_12495929_SNP [dm3] 3L_12502829_SNP [dm6]	C	T	2.908e^-4	0.806	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15153940	3R_15153940_SNP [dm3] 3R_19328218_SNP [dm6]	T	C	2.908e^-4	0.806	UPSTREAM CR44175 INTERGENIC
3R	15153994	3R_15153994_SNP [dm3] 3R_19328272_SNP [dm6]	T	A	2.908e^-4	0.806	UPSTREAM CR44175 INTERGENIC
3R	15154248	3R_15154248_SNP [dm3] 3R_19328526_SNP [dm6]	C	A	2.908e^-4	0.806	UPSTREAM CR44175 INTERGENIC
2L	15019414	2L_15019414_DEL [dm3] 2L_15019414_DEL [dm6]	TCCAT	T	2.923e^-4	0.806	INTRON GABA-B-R1
3L	18849866	3L_18849866_SNP [dm3] 3L_18856766_SNP [dm6]	C	T	2.928e^-4	0.806	UPSTREAM CR45388 INTERGENIC
3L	11527949	3L_11527949_SNP [dm3] 3L_11534849_SNP [dm6]	C	T	2.945e^-4	0.806	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15448855	2R_15448855_SNP [dm3] 2R_19561350_SNP [dm6]	T	G	2.948e^-4	0.806	INTRON sm
3L	2192818	3L_2192818_SNP [dm3] 3L_2192818_SNP [dm6]	C	G	2.950e^-4	0.806	UPSTREAM CG5707 INTERGENIC
2L	18343559	2L_18343559_SNP [dm3] 2L_18343559_SNP [dm6]	A	T	2.958e^-4	0.806	INTRON Fas3
3L	12246122	3L_12246122_SNP [dm3] 3L_12253022_SNP [dm6]	T	C	2.961e^-4	0.806	INTRON app
3L	7283492	3L_7283492_SNP [dm3] 3L_7290392_SNP [dm6]	T	A	2.969e^-4	0.806	INTRON unc-13-4A
3L	7283502	3L_7283502_MNP [dm3] 3L_7290402_MNP [dm6]	TAT	GTC	2.969e^-4	0.806	INTRON unc-13-4A
2L	4747977	2L_4747977_SNP [dm3] 2L_4747977_SNP [dm6]	G	A	2.974e^-4	0.806	INTRON CG15630
3L	11930917	3L_11930917_SNP [dm3] 3L_11937817_SNP [dm6]	G	C	2.975e^-4	0.806	NON_SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17797781	3R_17797781_SNP [dm3] 3R_21972059_SNP [dm6]	A	G	2.990e^-4	0.806	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	7355095	3R_7355095_SNP [dm3] 3R_11529373_SNP [dm6]	C	T	2.994e^-4	0.806	INTERGENIC
2L	11203841	2L_11203841_SNP [dm3] 2L_11203841_SNP [dm6]	T	A	3.014e^-4	0.806	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18079776	2L_18079776_SNP [dm3] 2L_18079776_SNP [dm6]	A	C	3.017e^-4	0.806	INTRON Arr1
3R	19222468	3R_19222468_SNP [dm3] 3R_23396746_SNP [dm6]	G	A	3.020e^-4	0.806	INTERGENIC
3R	15116874	3R_15116874_SNP [dm3] 3R_19291152_SNP [dm6]	C	G	3.021e^-4	0.806	INTERGENIC
2R	13391090	2R_13391090_SNP [dm3] 2R_17503585_SNP [dm6]	C	A	3.060e^-4	0.806	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
2R	1229109	2R_1229109_INS [dm3] 2R_5341604_INS [dm6]	T	TTTTATCTTAAACATAAGTG...	3.062e^-4	0.806	UPSTREAM CG10465 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9561345	2R_9561345_SNP [dm3] 2R_13673840_SNP [dm6]	A	G	3.087e^-4	0.806	DOWNSTREAM CR45032 INTRON fas	TF binding site mE1_TFBS_chinmo
2R	14957973	2R_14957973_SNP [dm3] 2R_19070468_SNP [dm6]	A	G	3.096e^-4	0.806	INTRON 5-HT1A
3L	17938192	3L_17938192_SNP [dm3] 3L_17945092_SNP [dm6]	C	A	3.103e^-4	0.806	INTRON CG43174
2L	3870133	2L_3870133_SNP [dm3] 2L_3870133_SNP [dm6]	C	T	3.105e^-4	0.806	SYNONYMOUS_CODING Cep97 START_GAINED Cep97 UTR_5_PRIME Cep97
2L	4761703	2L_4761703_SNP [dm3] 2L_4761703_SNP [dm6]	C	T	3.105e^-4	0.806	INTRON CG15630
2L	6700087	2L_6700087_SNP [dm3] 2L_6700087_SNP [dm6]	G	A	3.105e^-4	0.806	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17788117	2L_17788117_SNP [dm3] 2L_17788117_SNP [dm6]	T	G	3.122e^-4	0.806	UTR_3_PRIME CadN2
2L	17788126	2L_17788126_SNP [dm3] 2L_17788126_SNP [dm6]	A	G	3.122e^-4	0.806	UTR_3_PRIME CadN2
2L	17788128	2L_17788128_SNP [dm3] 2L_17788128_SNP [dm6]	G	A	3.122e^-4	0.806	UTR_3_PRIME CadN2
3L	12164916	3L_12164916_SNP [dm3] 3L_12171816_SNP [dm6]	G	A	3.127e^-4	0.806	INTRON Rh7
3R	26804827	3R_26804827_SNP [dm3] 3R_30979105_SNP [dm6]	G	A	3.131e^-4	0.806	INTRON 5-HT7
3R	26804828	3R_26804828_DEL [dm3] 3R_30979106_DEL [dm6]	CA	C	3.131e^-4	0.806	INTRON 5-HT7
2R	1626907	2R_1626907_SNP [dm3] 2R_5739402_SNP [dm6]	G	C	3.133e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	15991348	2R_15991348_SNP [dm3] 2R_20103843_SNP [dm6]	A	G	3.134e^-4	0.806	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	12344452	3L_12344452_SNP [dm3] 3L_12351352_SNP [dm6]	T	G	3.146e^-4	0.806	UTR_5_PRIME CrzR
2R	16862823	2R_16862823_INS [dm3] 2R_20975318_INS [dm6]	A	AGCGTTTTGCACA...	3.155e^-4	0.806	UPSTREAM CG34115 INTERGENIC
2R	9759688	2R_9759688_SNP [dm3] 2R_13872183_SNP [dm6]	C	T	3.181e^-4	0.806	INTRON shot	TF binding site mE1_TFBS_cad
2R	9759700	2R_9759700_SNP [dm3] 2R_13872195_SNP [dm6]	T	C	3.181e^-4	0.806	INTRON shot	TF binding site mE1_TFBS_cad
2R	7603527	2R_7603527_SNP [dm3] 2R_11716022_SNP [dm6]	C	A	3.184e^-4	0.806	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25463427	3R_25463427_SNP [dm3] 3R_29637705_SNP [dm6]	G	A	3.192e^-4	0.806	INTRON Dop1R2
3R	16347770	3R_16347770_SNP [dm3] 3R_20522048_SNP [dm6]	G	A	3.225e^-4	0.806	INTERGENIC
3R	6732601	3R_6732601_DEL [dm3] 3R_10906879_DEL [dm6]	GATTTAATTGGGTATTTCTG...	G	3.242e^-4	0.806	INTERGENIC
2L	9283420	2L_9283420_SNP [dm3] 2L_9283420_SNP [dm6]	C	T	3.245e^-4	0.806	INTRON Ggamma30A
2R	1626300	2R_1626300_SNP [dm3] 2R_5738795_SNP [dm6]	A	T	3.246e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
X	5483513	X_5483513_DEL [dm3] X_5589480_DEL [dm6]	TCAAGGGGGTT...	T	3.262e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15760960	3R_15760960_SNP [dm3] 3R_19935238_SNP [dm6]	T	C	3.266e^-4	0.806	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4746701	2L_4746701_SNP [dm3] 2L_4746701_SNP [dm6]	G	T	3.277e^-4	0.806	INTRON CG15630
2L	8961539	2L_8961539_SNP [dm3] 2L_8961539_SNP [dm6]	A	G	3.278e^-4	0.806	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
X	12602468	X_12602468_SNP [dm3] X_12708435_SNP [dm6]	C	T	3.289e^-4	0.806	SYNONYMOUS_CODING CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11931607	3L_11931607_SNP [dm3] 3L_11938507_SNP [dm6]	C	A	3.291e^-4	0.806	SPLICE_SITE_REGION CG44837 UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad
2L	4165743	2L_4165743_SNP [dm3] 2L_4165743_SNP [dm6]	T	C	3.292e^-4	0.806	NON_SYNONYMOUS_CODING Or24a
2L	5444791	2L_5444791_SNP [dm3] 2L_5444791_SNP [dm6]	A	T	3.299e^-4	0.806	INTERGENIC
3R	6723118	3R_6723118_SNP [dm3] 3R_10897396_SNP [dm6]	A	C	3.326e^-4	0.806	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
X	20496655	X_20496655_INS [dm3] X_20625628_INS [dm6]	C	CT	3.332e^-4	0.806	INTERGENIC
3L	11927875	3L_11927875_SNP [dm3] 3L_11934775_SNP [dm6]	A	G	3.350e^-4	0.806	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	11927980	3L_11927980_SNP [dm3] 3L_11934880_SNP [dm6]	C	A	3.350e^-4	0.806	INTRON CG44837 & 1 other
3L	11928024	3L_11928024_SNP [dm3] 3L_11934924_SNP [dm6]	A	C	3.350e^-4	0.806	INTRON CG44837 & 1 other
3L	11928552	3L_11928552_SNP [dm3] 3L_11935452_SNP [dm6]	C	T	3.350e^-4	0.806	SYNONYMOUS_CODING byn UTR_3_PRIME byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11929046	3L_11929046_SNP [dm3] 3L_11935946_SNP [dm6]	T	C	3.350e^-4	0.806	DOWNSTREAM byn INTRON CG44837
3L	11929411	3L_11929411_SNP [dm3] 3L_11936311_SNP [dm6]	A	T	3.350e^-4	0.806	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929442	3L_11929442_SNP [dm3] 3L_11936342_SNP [dm6]	T	C	3.350e^-4	0.806	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929450	3L_11929450_SNP [dm3] 3L_11936350_SNP [dm6]	A	T	3.350e^-4	0.806	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929890	3L_11929890_SNP [dm3] 3L_11936790_SNP [dm6]	A	T	3.350e^-4	0.806	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11931492	3L_11931492_SNP [dm3] 3L_11938392_SNP [dm6]	T	G	3.350e^-4	0.806	UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11933584	3L_11933584_SNP [dm3] 3L_11940484_SNP [dm6]	T	G	3.350e^-4	0.806	INTERGENIC
3L	11933819	3L_11933819_SNP [dm3] 3L_11940719_SNP [dm6]	G	A	3.350e^-4	0.806	INTERGENIC
3L	11933954	3L_11933954_SNP [dm3] 3L_11940854_SNP [dm6]	A	C	3.350e^-4	0.806	INTERGENIC
3L	11934298	3L_11934298_SNP [dm3] 3L_11941198_SNP [dm6]	T	C	3.350e^-4	0.806	UPSTREAM Rpt4R INTERGENIC
3L	11934704	3L_11934704_SNP [dm3] 3L_11941604_SNP [dm6]	C	A	3.350e^-4	0.806	UPSTREAM Rpt4R INTERGENIC
3L	11934799	3L_11934799_SNP [dm3] 3L_11941699_SNP [dm6]	A	T	3.350e^-4	0.806	UPSTREAM Rpt4R INTERGENIC
3L	11792036	3L_11792036_DEL [dm3] 3L_11798936_DEL [dm6]	ACTA	A	3.358e^-4	0.806	DOWNSTREAM CG10361 & 1 other INTERGENIC
2R	9579274	2R_9579274_SNP [dm3] 2R_13691769_SNP [dm6]	G	A	3.368e^-4	0.806	UTR_3_PRIME CG6220 INTRON fas
2R	10548373	2R_10548373_SNP [dm3] 2R_14660868_SNP [dm6]	C	T	3.371e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16904032	X_16904032_SNP [dm3] X_17009999_SNP [dm6]	C	T	3.379e^-4	0.806	INTRON CG45002
3R	13300724	3R_13300724_SNP [dm3] 3R_17475002_SNP [dm6]	C	G	3.390e^-4	0.806	SYNONYMOUS_CODING Dscam3 UTR_3_PRIME Dscam3 INTRON Dscam3
2R	14957988	2R_14957988_SNP [dm3] 2R_19070483_SNP [dm6]	C	T	3.390e^-4	0.806	INTRON 5-HT1A
3L	15674093	3L_15674093_SNP [dm3] 3L_15680993_SNP [dm6]	T	C	3.392e^-4	0.806	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3R	24611293	3R_24611293_SNP [dm3] 3R_28785571_SNP [dm6]	G	T	3.392e^-4	0.806	INTERGENIC
3L	11351609	3L_11351609_SNP [dm3] 3L_11358509_SNP [dm6]	A	T	3.401e^-4	0.806	INTERGENIC
2L	15457227	2L_15457227_SNP [dm3] 2L_15457227_SNP [dm6]	T	A	3.401e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14090819	2L_14090819_SNP [dm3] 2L_14090819_SNP [dm6]	C	T	3.407e^-4	0.806	UTR_3_PRIME nAChRalpha5
3L	2156295	3L_2156295_SNP [dm3] 3L_2156295_SNP [dm6]	A	T	3.422e^-4	0.806	INTRON CG15822
2R	9888929	2R_9888929_SNP [dm3] 2R_14001424_SNP [dm6]	C	T	3.425e^-4	0.806	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9888966	2R_9888966_SNP [dm3] 2R_14001461_SNP [dm6]	A	T	3.425e^-4	0.806	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1094154	3L_1094154_SNP [dm3] 3L_1094154_SNP [dm6]	T	C	3.433e^-4	0.806	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6342928	2L_6342928_SNP [dm3] 2L_6342928_SNP [dm6]	G	C	3.457e^-4	0.806	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv mE1_TFBS_sens
3L	11758547	3L_11758547_SNP [dm3] 3L_11765447_SNP [dm6]	C	A	3.460e^-4	0.806	INTRON CG6024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	15333470	3R_15333470_SNP [dm3] 3R_19507748_SNP [dm6]	C	G	3.460e^-4	0.806	INTRON Dys
3R	26251997	3R_26251997_SNP [dm3] 3R_30426275_SNP [dm6]	T	C	3.461e^-4	0.806	SYNONYMOUS_CODING CG2218	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4669791	2L_4669791_SNP [dm3] 2L_4669791_SNP [dm6]	C	A	3.470e^-4	0.806	INTERGENIC
X	2565595	X_2565595_SNP [dm3] X_2671562_SNP [dm6]	T	C	3.471e^-4	0.806	INTRON sgg
2R	9379933	2R_9379933_SNP [dm3] 2R_13492428_SNP [dm6]	T	A	3.475e^-4	0.806	INTRON bbc
3L	11388852	3L_11388852_SNP [dm3] 3L_11395752_SNP [dm6]	G	A	3.481e^-4	0.806	DOWNSTREAM CG11726 INTERGENIC
3L	11759191	3L_11759191_SNP [dm3] 3L_11766091_SNP [dm6]	T	C	3.488e^-4	0.806	START_GAINED CG6024 UTR_5_PRIME CG6024 UPSTREAM CG6024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	18343930	2L_18343930_SNP [dm3] 2L_18343930_SNP [dm6]	C	T	3.491e^-4	0.806	INTRON Fas3
3L	11931666	3L_11931666_SNP [dm3] 3L_11938566_SNP [dm6]	A	T	3.512e^-4	0.806	INTRON CG44837	TF binding site BDTNP1_TFBS_dl
2L	4669784	2L_4669784_SNP [dm3] 2L_4669784_SNP [dm6]	A	C	3.537e^-4	0.806	INTERGENIC
2L	4733779	2L_4733779_SNP [dm3] 2L_4733779_SNP [dm6]	G	A	3.537e^-4	0.806	SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2R	1292989	2R_1292989_SNP [dm3] 2R_5405484_SNP [dm6]	G	T	3.537e^-4	0.806	INTERGENIC	transposable element FlyBase
2R	1293056	2R_1293056_SNP [dm3] 2R_5405551_SNP [dm6]	G	A	3.537e^-4	0.806	INTERGENIC	transposable element FlyBase
3L	17950359	3L_17950359_SNP [dm3] 3L_17957259_SNP [dm6]	T	C	3.561e^-4	0.806	INTRON Eip75B
3L	17950367	3L_17950367_SNP [dm3] 3L_17957267_SNP [dm6]	C	T	3.561e^-4	0.806	INTRON Eip75B
2L	1939497	2L_1939497_SNP [dm3] 2L_1939497_SNP [dm6]	C	A	3.596e^-4	0.806	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11106323	3L_11106323_SNP [dm3] 3L_11113223_SNP [dm6]	C	A	3.596e^-4	0.806	DOWNSTREAM fd68A INTRON Sod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	5203960	X_5203960_SNP [dm3] X_5309927_SNP [dm6]	A	G	3.596e^-4	0.806	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
3R	25930338	3R_25930338_SNP [dm3] 3R_30104616_SNP [dm6]	C	T	3.606e^-4	0.806	SYNONYMOUS_CODING sima START_GAINED sima UTR_5_PRIME sima INTRON sima
2L	19366471	2L_19366471_SNP [dm3] 2L_19366471_SNP [dm6]	A	T	3.613e^-4	0.806	INTERGENIC
3L	5398609	3L_5398609_SNP [dm3] 3L_5405509_SNP [dm6]	T	C	3.621e^-4	0.806	INTERGENIC
2R	6785218	2R_6785218_SNP [dm3] 2R_10897713_SNP [dm6]	C	T	3.625e^-4	0.806	SYNONYMOUS_CODING CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	5445931	2L_5445931_SNP [dm3] 2L_5445931_SNP [dm6]	T	G	3.629e^-4	0.806	INTERGENIC
2L	5445933	2L_5445933_SNP [dm3] 2L_5445933_SNP [dm6]	T	A	3.629e^-4	0.806	INTERGENIC
2L	18364290	2L_18364290_DEL [dm3] 2L_18364290_DEL [dm6]	CA	C	3.642e^-4	0.806	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18364295	2L_18364295_SNP [dm3] 2L_18364295_SNP [dm6]	T	G	3.642e^-4	0.806	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18366273	2L_18366273_SNP [dm3] 2L_18366273_SNP [dm6]	C	A	3.642e^-4	0.806	INTRON Fas3
2R	8190897	2R_8190897_SNP [dm3] 2R_12303392_SNP [dm6]	C	T	3.642e^-4	0.806	INTRON SIP2
2L	16990628	2L_16990628_SNP [dm3] 2L_16990628_SNP [dm6]	A	G	3.649e^-4	0.806	INTRON beat-IIIb
2R	2024725	2R_2024725_SNP [dm3] 2R_6137220_SNP [dm6]	G	A	3.652e^-4	0.806	UPSTREAM CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_twi
3R	7384900	3R_7384900_SNP [dm3] 3R_11559178_SNP [dm6]	C	T	3.663e^-4	0.806	SYNONYMOUS_CODING CG10898 DOWNSTREAM fabp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	18349089	2R_18349089_SNP [dm3] 2R_22461584_SNP [dm6]	C	A	3.666e^-4	0.806	INTRON CG10384
3L	1456222	3L_1456222_SNP [dm3] 3L_1456222_SNP [dm6]	T	A	3.668e^-4	0.806	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6344972	2L_6344972_SNP [dm3] 2L_6344972_SNP [dm6]	A	G	3.675e^-4	0.806	INTRON Cpr	TF binding site mE1_TFBS_sens
2L	6344973	2L_6344973_SNP [dm3] 2L_6344973_SNP [dm6]	C	T	3.675e^-4	0.806	INTRON Cpr	TF binding site mE1_TFBS_sens
3R	17940237	3R_17940237_SNP [dm3] 3R_22114515_SNP [dm6]	G	A	3.678e^-4	0.806	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3L	10137081	3L_10137081_SNP [dm3] 3L_10143981_SNP [dm6]	C	T	3.682e^-4	0.806	INTERGENIC
3R	15338227	3R_15338227_DEL [dm3] 3R_19512505_DEL [dm6]	CATGAATG	C	3.685e^-4	0.806	INTRON Dys
X	14966995	X_14966995_SNP [dm3] X_15072962_SNP [dm6]	T	C	3.686e^-4	0.806	NON_SYNONYMOUS_CODING Lsd-2 INTRON Lsd-2
2L	5438837	2L_5438837_SNP [dm3] 2L_5438837_SNP [dm6]	A	G	3.689e^-4	0.806	INTRON CR31647
3R	13239980	3R_13239980_SNP [dm3] 3R_17414258_SNP [dm6]	A	G	3.692e^-4	0.806	NON_SYNONYMOUS_CODING CG42822 DOWNSTREAM CG42821
2R	2024404	2R_2024404_INS [dm3] 2R_6136899_INS [dm6]	A	AA	3.703e^-4	0.806	UPSTREAM CG14589 INTRON EcR
2R	17094276	2R_17094276_SNP [dm3] 2R_21206771_SNP [dm6]	G	C	3.713e^-4	0.806	INTRON CG44245 & 1 other
3L	11102767	3L_11102767_SNP [dm3] 3L_11109667_SNP [dm6]	C	T	3.726e^-4	0.806	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10172151	3R_10172151_SNP [dm3] 3R_14346429_SNP [dm6]	C	G	3.766e^-4	0.806	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	975729	2L_975729_SNP [dm3] 2L_975729_SNP [dm6]	A	G	3.792e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	7283510	3L_7283510_SNP [dm3] 3L_7290410_SNP [dm6]	A	C	3.795e^-4	0.806	INTRON unc-13-4A
3R	18918337	3R_18918337_SNP [dm3] 3R_23092615_SNP [dm6]	A	T	3.798e^-4	0.806	NON_SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 UPSTREAM CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20246038	2L_20246038_INS [dm3] 2L_20246038_INS [dm6]	A	TTATAAACTTATT...	3.844e^-4	0.806	INTERGENIC
2L	20246098	2L_20246098_SNP [dm3] 2L_20246098_SNP [dm6]	A	T	3.844e^-4	0.806	INTERGENIC
2R	8782364	2R_8782364_SNP [dm3] 2R_12894859_SNP [dm6]	C	A	3.844e^-4	0.806	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	11092534	3L_11092534_SNP [dm3] 3L_11099434_SNP [dm6]	T	C	3.844e^-4	0.806	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092542	3L_11092542_SNP [dm3] 3L_11099442_SNP [dm6]	T	G	3.844e^-4	0.806	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092554	3L_11092554_SNP [dm3] 3L_11099454_SNP [dm6]	C	T	3.844e^-4	0.806	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	15676195	3L_15676195_SNP [dm3] 3L_15683095_SNP [dm6]	G	C	3.844e^-4	0.806	NON_SYNONYMOUS_CODING CG7579 UPSTREAM pgant8	TF binding site mE1_TFBS_sens
3L	15679513	3L_15679513_SNP [dm3] 3L_15686413_SNP [dm6]	A	T	3.844e^-4	0.806	UTR_3_PRIME pgant8 & 1 other
3R	16467032	3R_16467032_SNP [dm3] 3R_20641310_SNP [dm6]	G	A	3.844e^-4	0.806	SYNONYMOUS_CODING Lrrk
X	5327621	X_5327621_SNP [dm3] X_5433588_SNP [dm6]	G	A	3.844e^-4	0.806	EXON CR44471	TF binding site mE1_TFBS_Trl
X	5327710	X_5327710_SNP [dm3] X_5433677_SNP [dm6]	A	C	3.844e^-4	0.806	INTRON CR44471	TF binding site mE1_TFBS_Trl
X	5327714	X_5327714_SNP [dm3] X_5433681_SNP [dm6]	G	A	3.844e^-4	0.806	INTRON CR44471	TF binding site mE1_TFBS_Trl
2L	8333363	2L_8333363_SNP [dm3] 2L_8333363_SNP [dm6]	G	A	3.846e^-4	0.806	DOWNSTREAM CG14275 INTERGENIC
3R	14514802	3R_14514802_SNP [dm3] 3R_18689080_SNP [dm6]	A	T	3.849e^-4	0.806	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16256085	3R_16256085_SNP [dm3] 3R_20430363_SNP [dm6]	T	G	3.849e^-4	0.806	INTRON Gfrl
X	20755014	X_20755014_SNP [dm3] X_20883987_SNP [dm6]	G	A	3.905e^-4	0.806	INTRON shakB
3R	15136279	3R_15136279_SNP [dm3] 3R_19310557_SNP [dm6]	G	A	3.930e^-4	0.806	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18917914	3R_18917914_SNP [dm3] 3R_23092192_SNP [dm6]	T	C	3.935e^-4	0.806	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
3R	18917935	3R_18917935_SNP [dm3] 3R_23092213_SNP [dm6]	A	G	3.935e^-4	0.806	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
3L	18598256	3L_18598256_SNP [dm3] 3L_18605156_SNP [dm6]	C	T	3.945e^-4	0.806	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
2L	4767906	2L_4767906_SNP [dm3] 2L_4767906_SNP [dm6]	T	A	3.946e^-4	0.806	INTRON CG15630
X	12340011	X_12340011_SNP [dm3] X_12445978_SNP [dm6]	G	A	3.960e^-4	0.806	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
3R	19222519	3R_19222519_SNP [dm3] 3R_23396797_SNP [dm6]	T	C	3.961e^-4	0.806	INTERGENIC
2L	11679763	2L_11679763_SNP [dm3] 2L_11679763_SNP [dm6]	T	G	3.972e^-4	0.806	INTERGENIC
3R	3750941	3R_3750941_SNP [dm3] 3R_7925219_SNP [dm6]	C	T	3.972e^-4	0.806	UTR_3_PRIME dsx DOWNSTREAM lds
2R	18593338	2R_18593338_SNP [dm3] 2R_22705833_SNP [dm6]	T	A	3.982e^-4	0.806	DOWNSTREAM Obp58c & 1 other INTERGENIC
2L	15760644	2L_15760644_INS [dm3] 2L_15760644_INS [dm6]	C	CCATTTC	3.983e^-4	0.806	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	4572217	X_4572217_INS [dm3] X_4678184_INS [dm6]	G	GG	3.984e^-4	0.806	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6619933	X_6619933_SNP [dm3] X_6725900_SNP [dm6]	T	C	3.987e^-4	0.806	INTRON CG3168	TF binding site mE1_TFBS_HSA
2L	19295289	2L_19295289_SNP [dm3] 2L_19295289_SNP [dm6]	C	T	3.996e^-4	0.806	INTERGENIC
3L	12726266	3L_12726266_SNP [dm3] 3L_12733166_SNP [dm6]	C	T	4.007e^-4	0.806	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	17422787	2R_17422787_SNP [dm3] 2R_21535282_SNP [dm6]	G	C	4.007e^-4	0.806	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18024810	3L_18024810_SNP [dm3] 3L_18031710_SNP [dm6]	T	A	4.017e^-4	0.806	INTRON Eip75B
3L	18024824	3L_18024824_SNP [dm3] 3L_18031724_SNP [dm6]	G	A	4.017e^-4	0.806	INTRON Eip75B
3L	18024825	3L_18024825_SNP [dm3] 3L_18031725_SNP [dm6]	C	T	4.017e^-4	0.806	INTRON Eip75B
3L	18024849	3L_18024849_SNP [dm3] 3L_18031749_SNP [dm6]	A	G	4.017e^-4	0.806	INTRON Eip75B
3L	18024855	3L_18024855_SNP [dm3] 3L_18031755_SNP [dm6]	A	T	4.017e^-4	0.806	INTRON Eip75B
3L	18024865	3L_18024865_SNP [dm3] 3L_18031765_SNP [dm6]	T	A	4.017e^-4	0.806	INTRON Eip75B
3L	10135550	3L_10135550_SNP [dm3] 3L_10142450_SNP [dm6]	C	A	4.019e^-4	0.806	INTERGENIC
3L	4033422	3L_4033422_SNP [dm3] 3L_4033422_SNP [dm6]	C	G	4.033e^-4	0.806	UPSTREAM Gr64e DOWNSTREAM CR45042 INTRON Gr64d & 1 other
3L	17230706	3L_17230706_SNP [dm3] 3L_17237606_SNP [dm6]	G	A	4.053e^-4	0.806	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6299955	3L_6299955_SNP [dm3] 3L_6306855_SNP [dm6]	A	T	4.067e^-4	0.806	DOWNSTREAM CR45113 INTERGENIC
X	4137717	X_4137717_SNP [dm3] X_4243684_SNP [dm6]	A	C	4.074e^-4	0.806	UPSTREAM Femcoat DOWNSTREAM Muc4B INTERGENIC
3R	17940312	3R_17940312_SNP [dm3] 3R_22114590_SNP [dm6]	A	C	4.103e^-4	0.806	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
2L	11877926	2L_11877926_SNP [dm3] 2L_11877926_SNP [dm6]	T	A	4.115e^-4	0.806	UPSTREAM Pde1c INTRON Pde1c
X	13236863	X_13236863_SNP [dm3] X_13342830_SNP [dm6]	C	T	4.131e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13236953	X_13236953_SNP [dm3] X_13342920_SNP [dm6]	T	C	4.131e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22793933	3L_22793933_SNP [dm3] 3L_22800833_SNP [dm6]	C	A	4.136e^-4	0.806	INTRON jim
3R	9773993	3R_9773993_SNP [dm3] 3R_13948271_SNP [dm6]	C	A	4.139e^-4	0.806	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17853063	2R_17853063_SNP [dm3] 2R_21965558_SNP [dm6]	C	A	4.144e^-4	0.806	INTRON ppk9
3L	11351539	3L_11351539_SNP [dm3] 3L_11358439_SNP [dm6]	G	A	4.146e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8185317	2R_8185317_SNP [dm3] 2R_12297812_SNP [dm6]	A	G	4.150e^-4	0.806	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
X	3428788	X_3428788_SNP [dm3] X_3534755_SNP [dm6]	A	T	4.192e^-4	0.806	INTRON CG32791	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3120052	2L_3120052_SNP [dm3] 2L_3120052_SNP [dm6]	A	T	4.197e^-4	0.806	INTRON toc
2L	18343716	2L_18343716_SNP [dm3] 2L_18343716_SNP [dm6]	G	T	4.199e^-4	0.806	INTRON Fas3
2L	18343901	2L_18343901_SNP [dm3] 2L_18343901_SNP [dm6]	T	C	4.199e^-4	0.806	INTRON Fas3
2L	18348622	2L_18348622_SNP [dm3] 2L_18348622_SNP [dm6]	C	G	4.199e^-4	0.806	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18352037	2L_18352037_SNP [dm3] 2L_18352037_SNP [dm6]	A	T	4.199e^-4	0.806	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18353156	2L_18353156_DEL [dm3] 2L_18353156_DEL [dm6]	TATGGTAGT	T	4.199e^-4	0.806	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2L	17871029	2L_17871029_SNP [dm3] 2L_17871029_SNP [dm6]	A	G	4.205e^-4	0.806	INTRON CadN2
3L	18059342	3L_18059342_SNP [dm3] 3L_18066242_SNP [dm6]	C	T	4.218e^-4	0.806	INTERGENIC
2R	12327532	2R_12327532_SNP [dm3] 2R_16440027_SNP [dm6]	T	C	4.227e^-4	0.806	INTERGENIC
3R	16255933	3R_16255933_SNP [dm3] 3R_20430211_SNP [dm6]	T	G	4.233e^-4	0.806	INTRON Gfrl
2R	17472391	2R_17472391_SNP [dm3] 2R_21584886_SNP [dm6]	C	A	4.233e^-4	0.806	NON_SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
2R	17472400	2R_17472400_SNP [dm3] 2R_21584895_SNP [dm6]	T	C	4.233e^-4	0.806	SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
2L	12534515	2L_12534515_SNP [dm3] 2L_12534515_SNP [dm6]	G	T	4.237e^-4	0.806	INTRON bun
2R	13391092	2R_13391092_SNP [dm3] 2R_17503587_SNP [dm6]	C	G	4.261e^-4	0.806	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
2L	7153737	2L_7153737_SNP [dm3] 2L_7153737_SNP [dm6]	C	T	4.261e^-4	0.806	INTRON Pvf3
X	8470660	X_8470660_SNP [dm3] X_8576627_SNP [dm6]	G	A	4.285e^-4	0.806	INTRON CG12065
X	4474489	X_4474489_INS [dm3] X_4580456_INS [dm6]	A	ACATA	4.286e^-4	0.806	INTRON CR32773
2L	4159793	2L_4159793_SNP [dm3] 2L_4159793_SNP [dm6]	C	T	4.290e^-4	0.806	INTERGENIC
2L	4159833	2L_4159833_SNP [dm3] 2L_4159833_SNP [dm6]	C	T	4.290e^-4	0.806	INTERGENIC
3R	4585151	3R_4585151_SNP [dm3] 3R_8759429_SNP [dm6]	C	G	4.293e^-4	0.806	INTRON CG11768 & 1 other
X	16175776	X_16175776_SNP [dm3] X_16281743_SNP [dm6]	G	A	4.296e^-4	0.806	INTRON eas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6699720	3L_6699720_SNP [dm3] 3L_6706620_SNP [dm6]	T	C	4.319e^-4	0.806	UPSTREAM CG8519 INTRON CG8519
3R	15334341	3R_15334341_SNP [dm3] 3R_19508619_SNP [dm6]	A	T	4.324e^-4	0.806	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11477090	3L_11477090_SNP [dm3] 3L_11483990_SNP [dm6]	G	C	4.325e^-4	0.806	INTERGENIC
3R	14818533	3R_14818533_SNP [dm3] 3R_18992811_SNP [dm6]	G	T	4.325e^-4	0.806	INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	19547112	3R_19547112_SNP [dm3] 3R_23721390_SNP [dm6]	C	A	4.325e^-4	0.806	NON_SYNONYMOUS_CODING CG10232	TF binding site mE1_TFBS_HSA
3L	10140104	3L_10140104_INS [dm3] 3L_10147004_INS [dm6]	C	CCC	4.328e^-4	0.806	DOWNSTREAM dpr10 INTERGENIC
2L	11722207	2L_11722207_SNP [dm3] 2L_11722207_SNP [dm6]	C	A	4.329e^-4	0.806	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11722212	2L_11722212_SNP [dm3] 2L_11722212_SNP [dm6]	T	C	4.329e^-4	0.806	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11722221	2L_11722221_SNP [dm3] 2L_11722221_SNP [dm6]	G	A	4.329e^-4	0.806	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6435593	2R_6435593_SNP [dm3] 2R_10548088_SNP [dm6]	T	C	4.336e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	20595074	2L_20595074_SNP [dm3] 2L_20595074_SNP [dm6]	T	C	4.337e^-4	0.806	INTRON CR44909
3R	25850736	3R_25850736_SNP [dm3] 3R_30025014_SNP [dm6]	G	C	4.350e^-4	0.806	INTRON Axn
2L	18345630	2L_18345630_SNP [dm3] 2L_18345630_SNP [dm6]	A	G	4.357e^-4	0.806	INTRON Fas3	TF binding site mE1_TFBS_inv
2L	18345905	2L_18345905_SNP [dm3] 2L_18345905_SNP [dm6]	G	A	4.357e^-4	0.806	INTRON Fas3
2L	18346268	2L_18346268_SNP [dm3] 2L_18346268_SNP [dm6]	G	A	4.357e^-4	0.806	INTRON Fas3
3R	18918124	3R_18918124_SNP [dm3] 3R_23092402_SNP [dm6]	C	T	4.363e^-4	0.806	SYNONYMOUS_CODING CG6726 START_GAINED CG17110 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7952540	3L_7952540_SNP [dm3] 3L_7959440_SNP [dm6]	A	G	4.388e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11244085	3L_11244085_SNP [dm3] 3L_11250985_SNP [dm6]	A	G	4.390e^-4	0.806	UPSTREAM CR44716 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	4670111	2L_4670111_SNP [dm3] 2L_4670111_SNP [dm6]	T	C	4.393e^-4	0.806	INTERGENIC
3R	6732545	3R_6732545_SNP [dm3] 3R_10906823_SNP [dm6]	T	A	4.400e^-4	0.806	INTERGENIC
2L	18357943	2L_18357943_SNP [dm3] 2L_18357943_SNP [dm6]	T	C	4.401e^-4	0.806	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	18358757	2L_18358757_SNP [dm3] 2L_18358757_SNP [dm6]	C	A	4.401e^-4	0.806	INTRON Fas3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18346246	2L_18346246_SNP [dm3] 2L_18346246_SNP [dm6]	G	T	4.407e^-4	0.806	INTRON Fas3
X	16958445	X_16958445_SNP [dm3] X_17064412_SNP [dm6]	A	C	4.409e^-4	0.806	INTRON CG45002
2L	4165790	2L_4165790_SNP [dm3] 2L_4165790_SNP [dm6]	G	T	4.429e^-4	0.806	SYNONYMOUS_CODING Or24a
2L	4165739	2L_4165739_SNP [dm3] 2L_4165739_SNP [dm6]	T	C	4.434e^-4	0.806	SYNONYMOUS_CODING Or24a
3R	25976673	3R_25976673_SNP [dm3] 3R_30150951_SNP [dm6]	G	T	4.454e^-4	0.806	INTERGENIC
X	4531778	X_4531778_SNP [dm3] X_4637745_SNP [dm6]	T	C	4.463e^-4	0.806	NON_SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19454315	3R_19454315_SNP [dm3] 3R_23628593_SNP [dm6]	C	T	4.470e^-4	0.806	INTRON CG31145
3R	11903451	3R_11903451_SNP [dm3] 3R_16077729_SNP [dm6]	G	T	4.472e^-4	0.806	INTRON Mhcl
3L	22838418	3L_22838418_SNP [dm3] 3L_22845318_SNP [dm6]	C	T	4.473e^-4	0.806	INTERGENIC
2R	8178119	2R_8178119_SNP [dm3] 2R_12290614_SNP [dm6]	A	G	4.479e^-4	0.806	UPSTREAM CG42700 INTRON CG42700
2R	10454150	2R_10454150_SNP [dm3] 2R_14566645_SNP [dm6]	T	C	4.483e^-4	0.806	INTRON ttv
3L	11759220	3L_11759220_SNP [dm3] 3L_11766120_SNP [dm6]	A	T	4.488e^-4	0.806	UTR_5_PRIME CG6024 UPSTREAM CG6024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9888912	2R_9888912_SNP [dm3] 2R_14001407_SNP [dm6]	A	G	4.491e^-4	0.806	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4162998	2L_4162998_SNP [dm3] 2L_4162998_SNP [dm6]	T	A	4.494e^-4	0.806	INTERGENIC
2L	10099101	2L_10099101_SNP [dm3] 2L_10099101_SNP [dm6]	T	A	4.505e^-4	0.806	INTRON CG34109 & 1 other
3R	19750258	3R_19750258_SNP [dm3] 3R_23924536_SNP [dm6]	G	T	4.519e^-4	0.806	UTR_5_PRIME Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19750261	3R_19750261_SNP [dm3] 3R_23924539_SNP [dm6]	C	T	4.519e^-4	0.806	UTR_5_PRIME Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4749706	2L_4749706_SNP [dm3] 2L_4749706_SNP [dm6]	A	G	4.530e^-4	0.806	INTRON CG15630
X	5379622	X_5379622_SNP [dm3] X_5485589_SNP [dm6]	C	A	4.568e^-4	0.806	INTRON SPR
3R	3447595	3R_3447595_SNP [dm3] 3R_7621873_SNP [dm6]	G	T	4.574e^-4	0.806	INTRON CG34127
3R	3464665	3R_3464665_SNP [dm3] 3R_7638943_SNP [dm6]	G	T	4.574e^-4	0.806	UTR_5_PRIME CG34127	insulator Insulator_Class_II.mE01
2R	9963539	2R_9963539_SNP [dm3] 2R_14076034_SNP [dm6]	G	A	4.574e^-4	0.806	INTRON Prosap
3R	19827848	3R_19827848_SNP [dm3] 3R_24002126_SNP [dm6]	G	A	4.582e^-4	0.806	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6850528	2L_6850528_SNP [dm3] 2L_6850528_SNP [dm6]	A	G	4.600e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6850538	2L_6850538_SNP [dm3] 2L_6850538_SNP [dm6]	G	C	4.600e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7606483	2L_7606483_DEL [dm3] 2L_7606483_DEL [dm6]	CATGTGGGC	C	4.603e^-4	0.806	INTRON Cyp4d21
3R	11906058	3R_11906058_SNP [dm3] 3R_16080336_SNP [dm6]	C	T	4.605e^-4	0.806	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	4.611e^-4	0.806	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078879	2L_18078879_SNP [dm3] 2L_18078879_SNP [dm6]	A	G	4.611e^-4	0.806	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078882	2L_18078882_SNP [dm3] 2L_18078882_SNP [dm6]	T	C	4.611e^-4	0.806	INTRON Arr1	TF binding site mE1_TFBS_chinmo
3R	19707342	3R_19707342_SNP [dm3] 3R_23881620_SNP [dm6]	A	T	4.620e^-4	0.806	INTRON Pli
3R	20415354	3R_20415354_SNP [dm3] 3R_24589632_SNP [dm6]	C	T	4.620e^-4	0.806	INTRON mld	TF binding site mE1_TFBS_HSA
3R	25131909	3R_25131909_SNP [dm3] 3R_29306187_SNP [dm6]	T	A	4.620e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7356071	3L_7356071_SNP [dm3] 3L_7362971_SNP [dm6]	C	T	4.623e^-4	0.806	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7356134	3L_7356134_SNP [dm3] 3L_7363034_SNP [dm6]	C	T	4.623e^-4	0.806	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo
X	10385458	X_10385458_SNP [dm3] X_10491425_SNP [dm6]	C	G	4.624e^-4	0.806	INTRON spri
2L	11039476	2L_11039476_SNP [dm3] 2L_11039476_SNP [dm6]	G	T	4.645e^-4	0.806	INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18638583	3L_18638583_SNP [dm3] 3L_18645483_SNP [dm6]	A	T	4.646e^-4	0.806	INTRON MYPT-75D
2R	17314360	2R_17314360_SNP [dm3] 2R_21426855_SNP [dm6]	A	T	4.653e^-4	0.806	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2907046	X_2907046_SNP [dm3] X_3013013_SNP [dm6]	G	A	4.653e^-4	0.806	INTRON kirre
X	2907051	X_2907051_SNP [dm3] X_3013018_SNP [dm6]	G	A	4.653e^-4	0.806	INTRON kirre
2R	6756188	2R_6756188_SNP [dm3] 2R_10868683_SNP [dm6]	T	A	4.658e^-4	0.806	INTRON CG30015
2L	17788088	2L_17788088_DEL [dm3] 2L_17788088_DEL [dm6]	TTAAGTGTCTCTGCTCC...	T	4.666e^-4	0.806	UTR_3_PRIME CadN2
3L	12237671	3L_12237671_SNP [dm3] 3L_12244571_SNP [dm6]	G	A	4.666e^-4	0.806	DOWNSTREAM CR43991 INTRON app
3L	11123871	3L_11123871_SNP [dm3] 3L_11130771_SNP [dm6]	C	A	4.670e^-4	0.806	UPSTREAM nol INTRON CG42575
2R	19084930	2R_19084930_SNP [dm3] 2R_23197407_SNP [dm6]	C	G	4.679e^-4	0.806	INTRON CG34371	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4746605	2L_4746605_SNP [dm3] 2L_4746605_SNP [dm6]	C	T	4.690e^-4	0.806	INTRON CG15630
2L	4746611	2L_4746611_SNP [dm3] 2L_4746611_SNP [dm6]	G	T	4.690e^-4	0.806	INTRON CG15630
2L	4747233	2L_4747233_SNP [dm3] 2L_4747233_SNP [dm6]	T	C	4.690e^-4	0.806	INTRON CG15630
2L	4747885	2L_4747885_SNP [dm3] 2L_4747885_SNP [dm6]	C	A	4.690e^-4	0.806	INTRON CG15630
2L	4748072	2L_4748072_SNP [dm3] 2L_4748072_SNP [dm6]	C	A	4.690e^-4	0.806	INTRON CG15630
2L	4748834	2L_4748834_SNP [dm3] 2L_4748834_SNP [dm6]	T	A	4.690e^-4	0.806	INTRON CG15630
2L	4752293	2L_4752293_SNP [dm3] 2L_4752293_SNP [dm6]	G	T	4.690e^-4	0.806	INTRON CG15630
2L	4753291	2L_4753291_SNP [dm3] 2L_4753291_SNP [dm6]	T	A	4.690e^-4	0.806	INTRON CG15630
2L	4754905	2L_4754905_SNP [dm3] 2L_4754905_SNP [dm6]	G	A	4.690e^-4	0.806	INTRON CG15630
2L	4754907	2L_4754907_SNP [dm3] 2L_4754907_SNP [dm6]	G	A	4.690e^-4	0.806	INTRON CG15630
2L	4754911	2L_4754911_SNP [dm3] 2L_4754911_SNP [dm6]	T	C	4.690e^-4	0.806	INTRON CG15630
2L	4754913	2L_4754913_SNP [dm3] 2L_4754913_SNP [dm6]	A	T	4.690e^-4	0.806	INTRON CG15630
2L	4754917	2L_4754917_SNP [dm3] 2L_4754917_SNP [dm6]	C	G	4.690e^-4	0.806	INTRON CG15630
2L	4754919	2L_4754919_DEL [dm3] 2L_4754919_DEL [dm6]	GCT	G	4.690e^-4	0.806	INTRON CG15630
2L	4754924	2L_4754924_SNP [dm3] 2L_4754924_SNP [dm6]	G	A	4.690e^-4	0.806	INTRON CG15630
2L	4754925	2L_4754925_SNP [dm3] 2L_4754925_SNP [dm6]	C	T	4.690e^-4	0.806	INTRON CG15630
2L	4755861	2L_4755861_SNP [dm3] 2L_4755861_SNP [dm6]	C	A	4.690e^-4	0.806	INTRON CG15630
2L	4755863	2L_4755863_DEL [dm3] 2L_4755863_DEL [dm6]	AA	A	4.690e^-4	0.806	INTRON CG15630
2L	4755873	2L_4755873_SNP [dm3] 2L_4755873_SNP [dm6]	A	G	4.690e^-4	0.806	INTRON CG15630
2R	16236281	2R_16236281_SNP [dm3] 2R_20348776_SNP [dm6]	C	T	4.697e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16236285	2R_16236285_SNP [dm3] 2R_20348780_SNP [dm6]	A	T	4.697e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14216709	2R_14216709_SNP [dm3] 2R_18329204_SNP [dm6]	T	A	4.702e^-4	0.806	INTRON sbb
2L	6753909	2L_6753909_SNP [dm3] 2L_6753909_SNP [dm6]	T	A	4.702e^-4	0.806	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12343679	2R_12343679_SNP [dm3] 2R_16456174_SNP [dm6]	A	G	4.708e^-4	0.806	INTERGENIC
2R	9170659	2R_9170659_SNP [dm3] 2R_13283154_SNP [dm6]	T	C	4.711e^-4	0.806	INTRON Dh31-R
3L	18144856	3L_18144856_DEL [dm3] 3L_18151756_DEL [dm6]	AGG	A	4.714e^-4	0.806	INTRON CG7330
2L	4748297	2L_4748297_SNP [dm3] 2L_4748297_SNP [dm6]	G	T	4.714e^-4	0.806	INTRON CG15630
2R	16168200	2R_16168200_SNP [dm3] 2R_20280695_SNP [dm6]	A	T	4.717e^-4	0.806	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2L	1939376	2L_1939376_SNP [dm3] 2L_1939376_SNP [dm6]	G	A	4.751e^-4	0.806	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20381523	2R_20381523_SNP [dm3] 2R_24494000_SNP [dm6]	A	T	4.765e^-4	0.806	UPSTREAM Crtp & 1 other INTERGENIC
3R	11908350	3R_11908350_SNP [dm3] 3R_16082628_SNP [dm6]	A	G	4.777e^-4	0.806	INTRON Mhcl
2L	19295273	2L_19295273_SNP [dm3] 2L_19295273_SNP [dm6]	T	C	4.782e^-4	0.806	INTERGENIC
2R	19616496	2R_19616496_SNP [dm3] 2R_23728973_SNP [dm6]	T	C	4.790e^-4	0.806	INTRON Sesn
3R	19026059	3R_19026059_SNP [dm3] 3R_23200337_SNP [dm6]	A	G	4.808e^-4	0.806	UTR_5_PRIME cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7114058	2L_7114058_SNP [dm3] 2L_7114058_SNP [dm6]	A	G	4.842e^-4	0.806	INTRON Pvf3
X	16764761	X_16764761_DEL [dm3] X_16870728_DEL [dm6]	ATGAAA	A	4.854e^-4	0.806	INTRON CG13003
2L	10100518	2L_10100518_SNP [dm3] 2L_10100518_SNP [dm6]	C	T	4.860e^-4	0.806	INTRON CG34109 & 1 other
X	11899164	X_11899164_DEL [dm3] X_12005131_DEL [dm6]	TT	T	4.863e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899425	X_11899425_SNP [dm3] X_12005392_SNP [dm6]	T	A	4.863e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899465	X_11899465_SNP [dm3] X_12005432_SNP [dm6]	A	T	4.863e^-4	0.806	INTERGENIC
2L	18349446	2L_18349446_SNP [dm3] 2L_18349446_SNP [dm6]	C	T	4.865e^-4	0.806	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6726171	3R_6726171_SNP [dm3] 3R_10900449_SNP [dm6]	G	A	4.867e^-4	0.806	INTERGENIC
3L	11429878	3L_11429878_SNP [dm3] 3L_11436778_SNP [dm6]	G	A	4.868e^-4	0.806	DOWNSTREAM CR44548 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8367956	2R_8367956_SNP [dm3] 2R_12480451_SNP [dm6]	G	A	4.870e^-4	0.806	INTRON Dh44-R2
X	12328784	X_12328784_SNP [dm3] X_12434751_SNP [dm6]	C	A	4.875e^-4	0.806	INTRON Pkcdelta
3R	25964787	3R_25964787_SNP [dm3] 3R_30139065_SNP [dm6]	T	C	4.883e^-4	0.806	INTRON AdoR
3R	26077303	3R_26077303_SNP [dm3] 3R_30251581_SNP [dm6]	T	A	4.893e^-4	0.806	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	12534513	2L_12534513_SNP [dm3] 2L_12534513_SNP [dm6]	C	T	4.911e^-4	0.806	INTRON bun
2R	17310503	2R_17310503_SNP [dm3] 2R_21422998_SNP [dm6]	T	C	4.920e^-4	0.806	INTRON Sdc
2L	4279057	2L_4279057_SNP [dm3] 2L_4279057_SNP [dm6]	T	C	4.922e^-4	0.806	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4279061	2L_4279061_SNP [dm3] 2L_4279061_SNP [dm6]	A	T	4.922e^-4	0.806	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	4.937e^-4	0.806	INTERGENIC
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	4.937e^-4	0.806	INTERGENIC
3R	25806545	3R_25806545_SNP [dm3] 3R_29980823_SNP [dm6]	A	G	4.937e^-4	0.806	INTERGENIC
X	4563075	X_4563075_SNP [dm3] X_4669042_SNP [dm6]	A	T	4.937e^-4	0.806	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13547940	2R_13547940_SNP [dm3] 2R_17660435_SNP [dm6]	T	G	4.941e^-4	0.806	INTRON CCHa1-R
2R	13580905	2R_13580905_SNP [dm3] 2R_17693400_SNP [dm6]	A	T	4.959e^-4	0.806	INTRON swi2
3L	12666984	3L_12666984_SNP [dm3] 3L_12673884_SNP [dm6]	G	T	4.959e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12667016	3L_12667016_SNP [dm3] 3L_12673916_SNP [dm6]	T	C	4.959e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	15678604	3L_15678604_SNP [dm3] 3L_15685504_SNP [dm6]	A	G	4.959e^-4	0.806	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15679158	3L_15679158_SNP [dm3] 3L_15686058_SNP [dm6]	G	T	4.959e^-4	0.806	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452
3L	18256615	3L_18256615_SNP [dm3] 3L_18263515_SNP [dm6]	A	G	4.959e^-4	0.806	INTERGENIC
X	4562500	X_4562500_SNP [dm3] X_4668467_SNP [dm6]	C	T	4.959e^-4	0.806	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14343025	2R_14343025_SNP [dm3] 2R_18455520_SNP [dm6]	C	A	4.960e^-4	0.806	INTERGENIC
2R	14343040	2R_14343040_SNP [dm3] 2R_18455535_SNP [dm6]	T	A	4.960e^-4	0.806	INTERGENIC
3L	22831384	3L_22831384_SNP [dm3] 3L_22838284_SNP [dm6]	C	T	4.965e^-4	0.806	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18188154	3R_18188154_SNP [dm3] 3R_22362432_SNP [dm6]	C	G	4.978e^-4	0.806	UPSTREAM CG7071 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9824472	2R_9824472_SNP [dm3] 2R_13936967_SNP [dm6]	A	G	4.981e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7113963	2L_7113963_SNP [dm3] 2L_7113963_SNP [dm6]	T	C	4.982e^-4	0.806	INTRON Pvf3
2L	4754909	2L_4754909_INS [dm3] 2L_4754909_INS [dm6]	A	AG	4.986e^-4	0.806	INTRON CG15630
2L	4757119	2L_4757119_SNP [dm3] 2L_4757119_SNP [dm6]	C	G	4.986e^-4	0.806	INTRON CG15630
2L	4757425	2L_4757425_SNP [dm3] 2L_4757425_SNP [dm6]	G	A	4.986e^-4	0.806	INTRON CG15630
X	14752160	X_14752160_SNP [dm3] X_14858127_SNP [dm6]	G	C	4.987e^-4	0.806	INTRON Flo2
3L	12666917	3L_12666917_SNP [dm3] 3L_12673817_SNP [dm6]	A	G	4.993e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666919	3L_12666919_SNP [dm3] 3L_12673819_SNP [dm6]	T	G	4.993e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666920	3L_12666920_SNP [dm3] 3L_12673820_SNP [dm6]	G	A	4.993e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8186583	2R_8186583_SNP [dm3] 2R_12299078_SNP [dm6]	G	A	5.003e^-4	0.806	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
2L	2353756	2L_2353756_SNP [dm3] 2L_2353756_SNP [dm6]	C	T	5.009e^-4	0.806	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5445944	2L_5445944_SNP [dm3] 2L_5445944_SNP [dm6]	T	G	5.016e^-4	0.806	INTERGENIC
2L	19436431	2L_19436431_SNP [dm3] 2L_19436431_SNP [dm6]	C	A	5.018e^-4	0.806	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
2R	9119738	2R_9119738_SNP [dm3] 2R_13232233_SNP [dm6]	T	C	5.027e^-4	0.806	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
2R	6750949	2R_6750949_SNP [dm3] 2R_10863444_SNP [dm6]	C	T	5.028e^-4	0.806	INTRON CG30015
2L	16990646	2L_16990646_SNP [dm3] 2L_16990646_SNP [dm6]	T	C	5.039e^-4	0.806	INTRON beat-IIIb
3L	3317265	3L_3317265_SNP [dm3] 3L_3317265_SNP [dm6]	G	C	5.061e^-4	0.806	DOWNSTREAM PIG-C & 1 other INTERGENIC
3L	3317271	3L_3317271_SNP [dm3] 3L_3317271_SNP [dm6]	G	T	5.061e^-4	0.806	DOWNSTREAM PIG-C & 1 other INTERGENIC
2R	16862943	2R_16862943_SNP [dm3] 2R_20975438_SNP [dm6]	C	T	5.067e^-4	0.806	UPSTREAM CG34115 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11388854	3L_11388854_SNP [dm3] 3L_11395754_SNP [dm6]	C	T	5.072e^-4	0.806	DOWNSTREAM CG11726 INTERGENIC
2R	17677925	2R_17677925_SNP [dm3] 2R_21790420_SNP [dm6]	C	A	5.083e^-4	0.806	SYNONYMOUS_CODING lox2
X	18107275	X_18107275_SNP [dm3] X_18213242_SNP [dm6]	C	T	5.098e^-4	0.806	SYNONYMOUS_CODING CG33639	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20376045	2R_20376045_SNP [dm3] 2R_24488522_SNP [dm6]	G	A	5.109e^-4	0.806	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2R	20376191	2R_20376191_SNP [dm3] 2R_24488668_SNP [dm6]	A	G	5.109e^-4	0.806	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15677588	3L_15677588_SNP [dm3] 3L_15684488_SNP [dm6]	T	C	5.114e^-4	0.806	INTRON pgant8
3L	15677591	3L_15677591_SNP [dm3] 3L_15684491_SNP [dm6]	T	C	5.114e^-4	0.806	INTRON pgant8
3L	15677592	3L_15677592_SNP [dm3] 3L_15684492_SNP [dm6]	A	T	5.114e^-4	0.806	INTRON pgant8
3R	14975192	3R_14975192_INS [dm3] 3R_19149470_INS [dm6]	C	CGTC	5.118e^-4	0.806	CODON_INSERTION CG5835 EXON CR44107	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14750834	X_14750834_SNP [dm3] X_14856801_SNP [dm6]	A	T	5.121e^-4	0.806	UPSTREAM CG9519 INTRON Flo2
3R	17558438	3R_17558438_SNP [dm3] 3R_21732716_SNP [dm6]	C	T	5.133e^-4	0.806	INTERGENIC
2L	18351034	2L_18351034_SNP [dm3] 2L_18351034_SNP [dm6]	A	T	5.133e^-4	0.806	INTRON Fas3
3L	11255427	3L_11255427_SNP [dm3] 3L_11262327_SNP [dm6]	T	C	5.136e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11732131	2L_11732131_SNP [dm3] 2L_11732131_SNP [dm6]	G	T	5.137e^-4	0.806	INTERGENIC
2L	2674536	2L_2674536_SNP [dm3] 2L_2674536_SNP [dm6]	C	A	5.140e^-4	0.806	INTERGENIC
2R	9824392	2R_9824392_SNP [dm3] 2R_13936887_SNP [dm6]	G	T	5.145e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18367471	2L_18367471_SNP [dm3] 2L_18367471_SNP [dm6]	T	A	5.181e^-4	0.806	INTRON Fas3
2L	18362410	2L_18362410_DEL [dm3] 2L_18362410_DEL [dm6]	GGCCATG	G	5.183e^-4	0.806	INTRON Fas3
X	12638306	X_12638306_SNP [dm3] X_12744273_SNP [dm6]	T	C	5.188e^-4	0.806	UTR_5_PRIME CG4004 UPSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9540446	3L_9540446_SNP [dm3] 3L_9547346_SNP [dm6]	C	T	5.202e^-4	0.806	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5438836	2L_5438836_SNP [dm3] 2L_5438836_SNP [dm6]	G	T	5.204e^-4	0.806	INTRON CR31647
2L	9286191	2L_9286191_SNP [dm3] 2L_9286191_SNP [dm6]	A	G	5.207e^-4	0.806	INTRON Ggamma30A
X	5688083	X_5688083_SNP [dm3] X_5794050_SNP [dm6]	G	A	5.230e^-4	0.806	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2R	12701172	2R_12701172_SNP [dm3] 2R_16813667_SNP [dm6]	T	C	5.234e^-4	0.806	DOWNSTREAM CR44379 & 1 other INTERGENIC
3L	18835836	3L_18835836_SNP [dm3] 3L_18842736_SNP [dm6]	T	C	5.239e^-4	0.806	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
3R	2687168	3R_2687168_SNP [dm3] 3R_6861446_SNP [dm6]	C	A	5.263e^-4	0.806	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2156232	3L_2156232_SNP [dm3] 3L_2156232_SNP [dm6]	G	A	5.265e^-4	0.806	INTRON CG15822
3L	2156323	3L_2156323_SNP [dm3] 3L_2156323_SNP [dm6]	T	C	5.265e^-4	0.806	INTRON CG15822
3L	2157067	3L_2157067_SNP [dm3] 3L_2157067_SNP [dm6]	A	C	5.265e^-4	0.806	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15248900	X_15248900_SNP [dm3] X_15354867_SNP [dm6]	G	A	5.265e^-4	0.806	SYNONYMOUS_CODING acj6
3L	9233602	3L_9233602_SNP [dm3] 3L_9240502_SNP [dm6]	G	A	5.279e^-4	0.806	INTERGENIC
3L	10848586	3L_10848586_SNP [dm3] 3L_10855486_SNP [dm6]	A	T	5.330e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17918419	2L_17918419_SNP [dm3] 2L_17918419_SNP [dm6]	C	T	5.347e^-4	0.806	DOWNSTREAM CR43274 INTERGENIC
3L	1078685	3L_1078685_SNP [dm3] 3L_1078685_SNP [dm6]	A	C	5.353e^-4	0.806	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9392473	X_9392473_SNP [dm3] X_9498440_SNP [dm6]	T	G	5.353e^-4	0.806	INTRON mgl	TF binding site BDTNP1_TFBS_dl
2L	18330547	2L_18330547_SNP [dm3] 2L_18330547_SNP [dm6]	A	G	5.359e^-4	0.806	INTRON Fas3
3R	10410854	3R_10410854_SNP [dm3] 3R_14585132_SNP [dm6]	A	C	5.360e^-4	0.806	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	9824227	2R_9824227_SNP [dm3] 2R_13936722_SNP [dm6]	G	A	5.360e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9824251	2R_9824251_SNP [dm3] 2R_13936746_SNP [dm6]	T	A	5.360e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16559571	2R_16559571_SNP [dm3] 2R_20672066_SNP [dm6]	T	G	5.366e^-4	0.806	UPSTREAM exu INTRON CG30152
2L	3953454	2L_3953454_SNP [dm3] 2L_3953454_SNP [dm6]	T	C	5.377e^-4	0.806	INTRON fred
2L	13540411	2L_13540411_SNP [dm3] 2L_13540411_SNP [dm6]	C	T	5.387e^-4	0.806	UPSTREAM CG16852 INTRON B4
2L	13540414	2L_13540414_SNP [dm3] 2L_13540414_SNP [dm6]	A	G	5.387e^-4	0.806	UPSTREAM CG16852 INTRON B4
X	19399427	X_19399427_SNP [dm3] X_19505394_SNP [dm6]	A	G	5.389e^-4	0.806	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8512929	2R_8512929_SNP [dm3] 2R_12625424_SNP [dm6]	T	C	5.406e^-4	0.806	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
2R	12700693	2R_12700693_SNP [dm3] 2R_16813188_SNP [dm6]	G	T	5.407e^-4	0.806	DOWNSTREAM CR44379 INTERGENIC
2R	12700704	2R_12700704_SNP [dm3] 2R_16813199_SNP [dm6]	C	T	5.407e^-4	0.806	DOWNSTREAM CR44379 INTERGENIC
2R	8447629	2R_8447629_SNP [dm3] 2R_12560124_SNP [dm6]	G	A	5.414e^-4	0.806	INTRON fra
X	14748323	X_14748323_SNP [dm3] X_14854290_SNP [dm6]	G	A	5.432e^-4	0.806	DOWNSTREAM CG9519 INTRON Flo2
3L	9325068	3L_9325068_SNP [dm3] 3L_9331968_SNP [dm6]	C	A	5.436e^-4	0.806	INTERGENIC
3L	21201276	3L_21201276_SNP [dm3] 3L_21208176_SNP [dm6]	C	A	5.440e^-4	0.806	UTR_3_PRIME CG10510 DOWNSTREAM CG10512	TF binding site mE1_TFBS_cad
X	19444511	X_19444511_SNP [dm3] X_19550478_SNP [dm6]	T	A	5.441e^-4	0.806	UPSTREAM mir-972 INTERGENIC
X	13610864	X_13610864_SNP [dm3] X_13716831_SNP [dm6]	A	C	5.445e^-4	0.806	INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
3L	14927186	3L_14927186_SNP [dm3] 3L_14934086_SNP [dm6]	C	T	5.451e^-4	0.806	INTRON DCX-EMAP
2L	6932215	2L_6932215_SNP [dm3] 2L_6932215_SNP [dm6]	C	T	5.470e^-4	0.806	START_GAINED CG43232 UTR_5_PRIME CG43232 DOWNSTREAM CG18304 & 1 other
3R	6733770	3R_6733770_SNP [dm3] 3R_10908048_SNP [dm6]	C	A	5.472e^-4	0.806	INTERGENIC
3R	6734052	3R_6734052_SNP [dm3] 3R_10908330_SNP [dm6]	A	T	5.472e^-4	0.806	INTERGENIC
2L	9012959	2L_9012959_SNP [dm3] 2L_9012959_SNP [dm6]	T	G	5.479e^-4	0.806	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	14216711	2R_14216711_SNP [dm3] 2R_18329206_SNP [dm6]	G	T	5.481e^-4	0.806	INTRON sbb
2R	14216712	2R_14216712_SNP [dm3] 2R_18329207_SNP [dm6]	A	T	5.481e^-4	0.806	INTRON sbb
X	5663357	X_5663357_DEL [dm3] X_5769324_DEL [dm6]	AAAGT	A	5.481e^-4	0.806	INTRON CG42699 & 1 other
2L	11672835	2L_11672835_SNP [dm3] 2L_11672835_SNP [dm6]	C	T	5.484e^-4	0.806	INTERGENIC
X	14747995	X_14747995_SNP [dm3] X_14853962_SNP [dm6]	G	A	5.500e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	18338111	3L_18338111_SNP [dm3] 3L_18345011_SNP [dm6]	A	T	5.513e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2R	8977418	2R_8977418_SNP [dm3] 2R_13089913_SNP [dm6]	T	C	5.519e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22059378	2L_22059378_SNP [dm3] 2L_22059378_SNP [dm6]	T	C	5.529e^-4	0.806	INTERGENIC
3R	14754867	3R_14754867_SNP [dm3] 3R_18929145_SNP [dm6]	T	C	5.547e^-4	0.806	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	2024714	2R_2024714_SNP [dm3] 2R_6137209_SNP [dm6]	T	A	5.549e^-4	0.806	UPSTREAM CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_twi
2L	16289921	2L_16289921_SNP [dm3] 2L_16289921_SNP [dm6]	T	C	5.564e^-4	0.806	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
X	6626796	X_6626796_SNP [dm3] X_6732763_SNP [dm6]	G	A	5.567e^-4	0.806	INTRON CG3168 EXON CR43461	TF binding site mE1_TFBS_zfh1
X	14748332	X_14748332_DEL [dm3] X_14854299_DEL [dm6]	AGAACTGATAGAACAAAC...	A	5.568e^-4	0.806	DOWNSTREAM CG9519 INTRON Flo2
X	7706831	X_7706831_SNP [dm3] X_7812798_SNP [dm6]	C	T	5.593e^-4	0.806	INTERGENIC
X	8699199	X_8699199_INS [dm3] X_8805166_INS [dm6]	T	TT	5.599e^-4	0.806	UTR_5_PRIME Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9824243	2R_9824243_SNP [dm3] 2R_13936738_SNP [dm6]	A	T	5.602e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7576379	X_7576379_SNP [dm3] X_7682346_SNP [dm6]	A	G	5.607e^-4	0.806	UTR_3_PRIME CHES-1-like
3L	11360118	3L_11360118_SNP [dm3] 3L_11367018_SNP [dm6]	C	T	5.609e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18835922	3L_18835922_SNP [dm3] 3L_18842822_SNP [dm6]	T	C	5.609e^-4	0.806	DOWNSTREAM CR32027 INTRON Indy	TF binding site BDTNP1_TFBS_da
X	3905101	X_3905101_SNP [dm3] X_4011068_SNP [dm6]	A	T	5.609e^-4	0.806	INTERGENIC
2L	19272390	2L_19272390_DEL [dm3] 2L_19272390_DEL [dm6]	TGTCTGGAGT	T	5.637e^-4	0.806	EXON CR44190
X	5121619	X_5121619_SNP [dm3] X_5227586_SNP [dm6]	T	G	5.643e^-4	0.806	INTRON CG15465 & 1 other
3L	6570028	3L_6570028_SNP [dm3] 3L_6576928_SNP [dm6]	T	C	5.654e^-4	0.806	INTRON CG18769 & 1 other
3R	10823948	3R_10823948_SNP [dm3] 3R_14998226_SNP [dm6]	T	C	5.682e^-4	0.806	INTERGENIC
2R	9766422	2R_9766422_SNP [dm3] 2R_13878917_SNP [dm6]	C	T	5.684e^-4	0.806	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3957007	3L_3957007_DEL [dm3] 3L_3957007_DEL [dm6]	TTCACCT	T	5.691e^-4	0.806	UTR_3_PRIME CG12605
2R	9824500	2R_9824500_DEL [dm3] 2R_13936995_DEL [dm6]	AA	A	5.721e^-4	0.806	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2252711	3L_2252711_SNP [dm3] 3L_2252711_SNP [dm6]	G	T	5.727e^-4	0.806	SYNONYMOUS_CODING CG32305 DOWNSTREAM CG1275	TF binding site mE1_TFBS_cad
3L	2252718	3L_2252718_SNP [dm3] 3L_2252718_SNP [dm6]	A	G	5.727e^-4	0.806	NON_SYNONYMOUS_CODING CG32305 DOWNSTREAM CG1275	TF binding site mE1_TFBS_cad
3R	16388687	3R_16388687_SNP [dm3] 3R_20562965_SNP [dm6]	C	T	5.729e^-4	0.806	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6296671	3L_6296671_SNP [dm3] 3L_6303571_SNP [dm6]	T	C	5.735e^-4	0.806	UPSTREAM CR45420 INTERGENIC
2R	9888840	2R_9888840_SNP [dm3] 2R_14001335_SNP [dm6]	C	A	5.746e^-4	0.806	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17219598	3L_17219598_SNP [dm3] 3L_17226498_SNP [dm6]	A	T	5.747e^-4	0.806	INTRON Rbp6
3L	17996575	3L_17996575_SNP [dm3] 3L_18003475_SNP [dm6]	A	G	5.748e^-4	0.806	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	4159695	2L_4159695_SNP [dm3] 2L_4159695_SNP [dm6]	T	G	5.756e^-4	0.806	INTERGENIC
3L	5362251	3L_5362251_SNP [dm3] 3L_5369151_SNP [dm6]	G	T	5.759e^-4	0.806	UPSTREAM CR44515 INTERGENIC
2R	6435535	2R_6435535_SNP [dm3] 2R_10548030_SNP [dm6]	G	A	5.769e^-4	0.806	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18163959	3L_18163959_SNP [dm3] 3L_18170859_SNP [dm6]	C	T	5.774e^-4	0.806	INTRON W
3L	7283434	3L_7283434_SNP [dm3] 3L_7290334_SNP [dm6]	G	T	5.817e^-4	0.806	INTRON unc-13-4A
2L	1991200	2L_1991200_SNP [dm3] 2L_1991200_SNP [dm6]	C	T	5.834e^-4	0.806	DOWNSTREAM Obp22a & 1 other INTERGENIC
2L	9194994	2L_9194994_SNP [dm3] 2L_9194994_SNP [dm6]	C	A	5.850e^-4	0.806	INTRON tai
3L	421588	3L_421588_SNP [dm3] 3L_421588_SNP [dm6]	G	A	5.852e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_sens
3L	421591	3L_421591_SNP [dm3] 3L_421591_SNP [dm6]	T	A	5.852e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10595780	3R_10595780_SNP [dm3] 3R_14770058_SNP [dm6]	T	G	5.859e^-4	0.806	INTRON jvl
2R	16863161	2R_16863161_SNP [dm3] 2R_20975656_SNP [dm6]	A	G	5.870e^-4	0.806	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5663140	X_5663140_SNP [dm3] X_5769107_SNP [dm6]	C	T	5.875e^-4	0.806	INTRON CG42699 & 1 other
3L	18563923	3L_18563923_SNP [dm3] 3L_18570823_SNP [dm6]	G	A	5.878e^-4	0.806	INTRON AstC-R1
X	9108855	X_9108855_SNP [dm3] X_9214822_SNP [dm6]	T	C	5.878e^-4	0.806	UPSTREAM Obp8a & 1 other INTERGENIC
2L	4754989	2L_4754989_SNP [dm3] 2L_4754989_SNP [dm6]	T	A	5.890e^-4	0.806	INTRON CG15630
2L	4754995	2L_4754995_SNP [dm3] 2L_4754995_SNP [dm6]	G	A	5.890e^-4	0.806	INTRON CG15630
3R	13363908	3R_13363908_SNP [dm3] 3R_17538186_SNP [dm6]	A	T	5.903e^-4	0.806	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20353923	2R_20353923_SNP [dm3] 2R_24466400_SNP [dm6]	C	A	5.910e^-4	0.806	INTRON CG13579
X	14743141	X_14743141_SNP [dm3] X_14849108_SNP [dm6]	C	T	5.912e^-4	0.806	UPSTREAM CG9522 INTRON Flo2
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	5.916e^-4	0.806	INTRON app
2R	19258637	2R_19258637_SNP [dm3] 2R_23371114_SNP [dm6]	A	G	5.926e^-4	0.806	SYNONYMOUS_CODING Ice1 DOWNSTREAM Golgin245	TF binding site mE1_TFBS_chinmo
2R	9662489	2R_9662489_SNP [dm3] 2R_13774984_SNP [dm6]	G	A	5.951e^-4	0.806	SYNONYMOUS_CODING Cpr50Ca
3R	6309513	3R_6309513_SNP [dm3] 3R_10483791_SNP [dm6]	G	A	5.958e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11905856	3R_11905856_SNP [dm3] 3R_16080134_SNP [dm6]	G	T	5.974e^-4	0.806	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19049137	3L_19049137_SNP [dm3] 3L_19056037_SNP [dm6]	A	T	5.978e^-4	0.806	INTERGENIC
3L	19049139	3L_19049139_INS [dm3] 3L_19056039_INS [dm6]	A	ATCGTAG	5.978e^-4	0.806	INTERGENIC
3L	19049145	3L_19049145_SNP [dm3] 3L_19056045_SNP [dm6]	A	T	5.978e^-4	0.806	INTERGENIC
3L	19049149	3L_19049149_SNP [dm3] 3L_19056049_SNP [dm6]	A	T	5.978e^-4	0.806	INTERGENIC
3L	19049157	3L_19049157_SNP [dm3] 3L_19056057_SNP [dm6]	T	A	5.978e^-4	0.806	INTERGENIC
3L	19049170	3L_19049170_SNP [dm3] 3L_19056070_SNP [dm6]	G	A	5.978e^-4	0.806	INTERGENIC
3L	19049175	3L_19049175_SNP [dm3] 3L_19056075_SNP [dm6]	C	T	5.978e^-4	0.806	INTERGENIC
2L	11186173	2L_11186173_SNP [dm3] 2L_11186173_SNP [dm6]	A	G	5.995e^-4	0.806	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12932903	3L_12932903_SNP [dm3] 3L_12939803_SNP [dm6]	T	G	6.008e^-4	0.806	INTERGENIC
3R	3438410	3R_3438410_SNP [dm3] 3R_7612688_SNP [dm6]	C	T	6.013e^-4	0.806	INTRON CG34127
3R	3442893	3R_3442893_SNP [dm3] 3R_7617171_SNP [dm6]	C	G	6.013e^-4	0.806	INTRON CG34127
3R	3458209	3R_3458209_SNP [dm3] 3R_7632487_SNP [dm6]	A	T	6.013e^-4	0.806	INTRON CG34127
3R	3462592	3R_3462592_SNP [dm3] 3R_7636870_SNP [dm6]	A	G	6.013e^-4	0.806	INTRON CG34127
3R	3475536	3R_3475536_SNP [dm3] 3R_7649814_SNP [dm6]	G	T	6.013e^-4	0.806	INTERGENIC
3R	3475604	3R_3475604_SNP [dm3] 3R_7649882_SNP [dm6]	C	A	6.013e^-4	0.806	INTERGENIC
X	14008210	X_14008210_SNP [dm3] X_14114177_SNP [dm6]	G	T	6.013e^-4	0.806	EXON CR44657	TF binding site mE1_TFBS_HSA
X	6626664	X_6626664_SNP [dm3] X_6732631_SNP [dm6]	G	A	6.016e^-4	0.806	UPSTREAM CR43461 INTRON CG3168	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	13364442	3R_13364442_SNP [dm3] 3R_17538720_SNP [dm6]	C	T	6.058e^-4	0.806	SYNONYMOUS_CODING l_3_07882
3R	13364463	3R_13364463_SNP [dm3] 3R_17538741_SNP [dm6]	C	T	6.058e^-4	0.806	SYNONYMOUS_CODING l_3_07882
3L	11475442	3L_11475442_SNP [dm3] 3L_11482342_SNP [dm6]	T	G	6.059e^-4	0.806	INTERGENIC
X	14748186	X_14748186_SNP [dm3] X_14854153_SNP [dm6]	G	T	6.080e^-4	0.806	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	19764948	3R_19764948_SNP [dm3] 3R_23939226_SNP [dm6]	T	C	6.099e^-4	0.806	UPSTREAM Gdh INTRON Gdh
3L	6367600	3L_6367600_DEL [dm3] 3L_6374500_DEL [dm6]	GG	G	6.102e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19571072	3R_19571072_SNP [dm3] 3R_23745350_SNP [dm6]	A	C	6.124e^-4	0.806	INTRON Hmgcr
3R	19571073	3R_19571073_SNP [dm3] 3R_23745351_SNP [dm6]	A	C	6.124e^-4	0.806	INTRON Hmgcr
3R	19571075	3R_19571075_DEL [dm3] 3R_23745353_DEL [dm6]	CTA	C	6.124e^-4	0.806	INTRON Hmgcr
3R	14768880	3R_14768880_SNP [dm3] 3R_18943158_SNP [dm6]	C	T	6.126e^-4	0.806	INTRON CG42613
3L	6722093	3L_6722093_SNP [dm3] 3L_6728993_SNP [dm6]	A	T	6.142e^-4	0.806	UTR_3_PRIME dikar DOWNSTREAM CR45417	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18540983	3L_18540983_SNP [dm3] 3L_18547883_SNP [dm6]	C	T	6.148e^-4	0.806	INTERGENIC
3L	11148905	3L_11148905_INS [dm3] 3L_11155805_INS [dm6]	G	GG	6.152e^-4	0.806	INTRON CG32082
2L	10779427	2L_10779427_SNP [dm3] 2L_10779427_SNP [dm6]	A	G	6.162e^-4	0.806	INTRON CG31869
2L	11186198	2L_11186198_SNP [dm3] 2L_11186198_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11947012	2L_11947012_SNP [dm3] 2L_11947012_SNP [dm6]	C	T	6.162e^-4	0.806	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	11947013	2L_11947013_SNP [dm3] 2L_11947013_SNP [dm6]	T	C	6.162e^-4	0.806	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	20224756	2L_20224756_SNP [dm3] 2L_20224756_SNP [dm6]	G	A	6.162e^-4	0.806	INTERGENIC
2L	20224825	2L_20224825_SNP [dm3] 2L_20224825_SNP [dm6]	C	A	6.162e^-4	0.806	INTERGENIC
2L	4623398	2L_4623398_SNP [dm3] 2L_4623398_SNP [dm6]	T	A	6.162e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4639176	2L_4639176_SNP [dm3] 2L_4639176_SNP [dm6]	G	T	6.162e^-4	0.806	INTERGENIC
2L	4743918	2L_4743918_SNP [dm3] 2L_4743918_SNP [dm6]	A	T	6.162e^-4	0.806	INTRON CG15630
2L	4757741	2L_4757741_SNP [dm3] 2L_4757741_SNP [dm6]	A	C	6.162e^-4	0.806	INTRON CG15630
2L	4758215	2L_4758215_SNP [dm3] 2L_4758215_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON CG15630
2L	4762138	2L_4762138_SNP [dm3] 2L_4762138_SNP [dm6]	T	C	6.162e^-4	0.806	UPSTREAM CG42523 INTRON CG15630
2L	4762779	2L_4762779_SNP [dm3] 2L_4762779_SNP [dm6]	G	C	6.162e^-4	0.806	UPSTREAM CG42523 INTRON CG15630
2L	4762860	2L_4762860_SNP [dm3] 2L_4762860_SNP [dm6]	A	G	6.162e^-4	0.806	UPSTREAM CG42523 INTRON CG15630
2L	4764739	2L_4764739_SNP [dm3] 2L_4764739_SNP [dm6]	A	G	6.162e^-4	0.806	DOWNSTREAM CG42523 INTRON CG15630
2L	4764844	2L_4764844_SNP [dm3] 2L_4764844_SNP [dm6]	G	A	6.162e^-4	0.806	DOWNSTREAM CG42523 INTRON CG15630
2L	4767095	2L_4767095_SNP [dm3] 2L_4767095_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON CG15630
2L	4767334	2L_4767334_SNP [dm3] 2L_4767334_SNP [dm6]	G	C	6.162e^-4	0.806	INTRON CG15630
2L	4767956	2L_4767956_SNP [dm3] 2L_4767956_SNP [dm6]	T	A	6.162e^-4	0.806	INTRON CG15630
2L	4768725	2L_4768725_SNP [dm3] 2L_4768725_SNP [dm6]	A	G	6.162e^-4	0.806	INTRON CG15630
2L	4769759	2L_4769759_SNP [dm3] 2L_4769759_SNP [dm6]	T	G	6.162e^-4	0.806	INTRON CG15630
2L	4769767	2L_4769767_SNP [dm3] 2L_4769767_SNP [dm6]	G	T	6.162e^-4	0.806	INTRON CG15630
2L	5404623	2L_5404623_SNP [dm3] 2L_5404623_SNP [dm6]	A	C	6.162e^-4	0.806	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7105943	2L_7105943_SNP [dm3] 2L_7105943_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON Pvf3
2L	7454122	2L_7454122_SNP [dm3] 2L_7454122_SNP [dm6]	G	A	6.162e^-4	0.806	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
2R	1324473	2R_1324473_SNP [dm3] 2R_5436968_SNP [dm6]	A	T	6.162e^-4	0.806	INTRON laccase2
2R	1411747	2R_1411747_DEL [dm3] 2R_5524242_DEL [dm6]	TCGAT	T	6.162e^-4	0.806	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2R	1412161	2R_1412161_SNP [dm3] 2R_5524656_SNP [dm6]	C	T	6.162e^-4	0.806	UPSTREAM CG30438 INTRON CG30438
2R	1417621	2R_1417621_SNP [dm3] 2R_5530116_SNP [dm6]	G	T	6.162e^-4	0.806	INTRON CG30438	transposable element FlyBase
2R	1421731	2R_1421731_SNP [dm3] 2R_5534226_SNP [dm6]	T	A	6.162e^-4	0.806	INTRON CG30438	transposable element FlyBase
2R	1422116	2R_1422116_SNP [dm3] 2R_5534611_SNP [dm6]	T	A	6.162e^-4	0.806	INTRON CG30438	transposable element FlyBase
2R	1424096	2R_1424096_SNP [dm3] 2R_5536591_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424122	2R_1424122_SNP [dm3] 2R_5536617_SNP [dm6]	C	T	6.162e^-4	0.806	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424144	2R_1424144_DEL [dm3] 2R_5536639_DEL [dm6]	TTTCAATT	CGC	6.162e^-4	0.806	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1424159	2R_1424159_SNP [dm3] 2R_5536654_SNP [dm6]	G	T	6.162e^-4	0.806	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7356107	3L_7356107_SNP [dm3] 3L_7363007_SNP [dm6]	G	A	6.167e^-4	0.806	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16255793	3R_16255793_INS [dm3] 3R_20430071_INS [dm6]	A	ATTCAG	6.173e^-4	0.806	INTRON Gfrl
2L	19774024	2L_19774024_DEL [dm3] 2L_19774024_DEL [dm6]	ACATA	A	6.185e^-4	0.806	DOWNSTREAM CdGAPr INTERGENIC
2R	18047542	2R_18047542_INS [dm3] 2R_22160037_INS [dm6]	G	GGG	6.188e^-4	0.806	INTRON a	TF binding site mE1_TFBS_chinmo
2L	5587881	2L_5587881_SNP [dm3] 2L_5587881_SNP [dm6]	G	A	6.192e^-4	0.806	SYNONYMOUS_CODING CG7251
2R	8183657	2R_8183657_SNP [dm3] 2R_12296152_SNP [dm6]	C	A	6.192e^-4	0.806	DOWNSTREAM CR45271 INTRON CG42700
3R	11497973	3R_11497973_SNP [dm3] 3R_15672251_SNP [dm6]	T	G	6.196e^-4	0.806	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	20551095	3L_20551095_SNP [dm3] 3L_20557995_SNP [dm6]	T	C	6.196e^-4	0.806	INTERGENIC
2R	9411289	2R_9411289_SNP [dm3] 2R_13523784_SNP [dm6]	G	A	6.205e^-4	0.806	DOWNSTREAM CG13331 INTRON Vmat
2R	10454105	2R_10454105_SNP [dm3] 2R_14566600_SNP [dm6]	C	G	6.238e^-4	0.806	INTRON ttv
3R	25970654	3R_25970654_SNP [dm3] 3R_30144932_SNP [dm6]	T	C	6.245e^-4	0.806	INTRON AdoR
X	3164710	X_3164710_SNP [dm3] X_3270677_SNP [dm6]	G	T	6.250e^-4	0.806	INTRON dnc
3L	9324185	3L_9324185_SNP [dm3] 3L_9331085_SNP [dm6]	G	C	6.260e^-4	0.806	INTERGENIC
X	3962370	X_3962370_SNP [dm3] X_4068337_SNP [dm6]	C	T	6.268e^-4	0.806	INTERGENIC
2L	18033117	2L_18033117_SNP [dm3] 2L_18033117_SNP [dm6]	A	C	6.273e^-4	0.806	INTRON rdo	TF binding site mE1_TFBS_cnc
X	15523930	X_15523930_SNP [dm3] X_15629897_SNP [dm6]	C	T	6.286e^-4	0.806	INTRON sog
X	14752387	X_14752387_INS [dm3] X_14858354_INS [dm6]	T	TA	6.295e^-4	0.806	INTRON Flo2
2R	6555112	2R_6555112_SNP [dm3] 2R_10667607_SNP [dm6]	C	T	6.303e^-4	0.806	INTERGENIC
2R	19138541	2R_19138541_SNP [dm3] 2R_23251018_SNP [dm6]	G	A	6.305e^-4	0.806	INTERGENIC
2L	16289297	2L_16289297_SNP [dm3] 2L_16289297_SNP [dm6]	T	G	6.327e^-4	0.806	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
3L	9343184	3L_9343184_SNP [dm3] 3L_9350084_SNP [dm6]	C	G	6.327e^-4	0.806	DOWNSTREAM UGP INTRON PGRP-LF
2R	9963808	2R_9963808_DEL [dm3] 2R_14076303_DEL [dm6]	ATAAATA	A	6.332e^-4	0.806	INTRON Prosap
2L	7108073	2L_7108073_DEL [dm3] 2L_7108073_DEL [dm6]	TT	T	6.345e^-4	0.806	INTRON Pvf3
2R	6785290	2R_6785290_SNP [dm3] 2R_10897785_SNP [dm6]	T	A	6.353e^-4	0.806	SYNONYMOUS_CODING CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	6.358e^-4	0.806	INTERGENIC
2L	7602731	2L_7602731_SNP [dm3] 2L_7602731_SNP [dm6]	A	G	6.365e^-4	0.806	INTERGENIC
3L	10194196	3L_10194196_INS [dm3] 3L_10201096_INS [dm6]	A	AA	6.377e^-4	0.806	INTRON ect
3L	10194205	3L_10194205_SNP [dm3] 3L_10201105_SNP [dm6]	G	T	6.377e^-4	0.806	INTRON ect
3L	10194219	3L_10194219_SNP [dm3] 3L_10201119_SNP [dm6]	T	C	6.377e^-4	0.806	INTRON ect
2R	6785215	2R_6785215_SNP [dm3] 2R_10897710_SNP [dm6]	A	G	6.382e^-4	0.806	SYNONYMOUS_CODING CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	11961136	3L_11961136_SNP [dm3] 3L_11968036_SNP [dm6]	C	T	6.382e^-4	0.806	SYNONYMOUS_CODING Muc68E	TF binding site mE1_TFBS_sens
2R	14961210	2R_14961210_SNP [dm3] 2R_19073705_SNP [dm6]	A	T	6.397e^-4	0.806	INTRON 5-HT1A
3L	7087862	3L_7087862_SNP [dm3] 3L_7094762_SNP [dm6]	G	T	6.399e^-4	0.806	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3R	18691680	3R_18691680_DEL [dm3] 3R_22865958_DEL [dm6]	TGTAA	T	6.402e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18358154	2L_18358154_SNP [dm3] 2L_18358154_SNP [dm6]	T	A	6.409e^-4	0.806	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	15320217	X_15320217_SNP [dm3] X_15426184_SNP [dm6]	A	T	6.415e^-4	0.806	INTRON Cngl
X	9378917	X_9378917_SNP [dm3] X_9484884_SNP [dm6]	A	C	6.417e^-4	0.806	INTRON mgl
3R	25463478	3R_25463478_SNP [dm3] 3R_29637756_SNP [dm6]	T	C	6.421e^-4	0.806	INTRON Dop1R2
3R	25463520	3R_25463520_SNP [dm3] 3R_29637798_SNP [dm6]	T	G	6.421e^-4	0.806	INTRON Dop1R2
3R	25463521	3R_25463521_SNP [dm3] 3R_29637799_SNP [dm6]	G	A	6.421e^-4	0.806	INTRON Dop1R2
3L	11927683	3L_11927683_SNP [dm3] 3L_11934583_SNP [dm6]	C	T	6.422e^-4	0.806	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12843526	3L_12843526_DEL [dm3] 3L_12850426_DEL [dm6]	AA	A	6.434e^-4	0.806	UPSTREAM CG10948 INTRON Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

sons2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results