DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.307e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1266 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13588263	3R_13588263_INS [dm3] 3R_17762541_INS [dm6]	G	GTCG	1.161e^-6	0.919	UTR_5_PRIME TyrR UPSTREAM TyrR
3R	9196465	3R_9196465_SNP [dm3] 3R_13370743_SNP [dm6]	C	A	3.926e^-6	0.919	DOWNSTREAM CheA87a INTRON Lip3
3R	9196475	3R_9196475_SNP [dm3] 3R_13370753_SNP [dm6]	T	C	3.926e^-6	0.919	DOWNSTREAM CheA87a INTRON Lip3
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	5.383e^-6	0.919	INTRON Glut1
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	5.408e^-6	0.919	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	8.757e^-6	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	8.799e^-6	0.919	INTRON salr	regulatory region REDfly_CRMs
3L	17335883	3L_17335883_SNP [dm3] 3L_17342783_SNP [dm6]	G	A	1.081e^-5	0.919	INTRON brv2
2L	11360994	2L_11360994_SNP [dm3] 2L_11360994_SNP [dm6]	G	C	1.134e^-5	0.919	INTRON salr	regulatory region REDfly_CRMs
3R	16739456	3R_16739456_SNP [dm3] 3R_20913734_SNP [dm6]	C	T	1.142e^-5	0.919	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8010191	2L_8010191_SNP [dm3] 2L_8010191_SNP [dm6]	G	A	1.170e^-5	0.919	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13588248	3R_13588248_SNP [dm3] 3R_17762526_SNP [dm6]	G	A	1.372e^-5	0.919	UTR_5_PRIME TyrR UPSTREAM TyrR
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	1.407e^-5	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	1.422e^-5	0.919	INTRON CG44422
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	1.438e^-5	0.919	INTERGENIC
3L	1383873	3L_1383873_SNP [dm3] 3L_1383873_SNP [dm6]	A	C	1.448e^-5	0.919	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
X	3911257	X_3911257_SNP [dm3] X_4017224_SNP [dm6]	G	A	1.597e^-5	0.919	INTERGENIC
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	1.619e^-5	0.919	UPSTREAM Ir64a INTERGENIC
3R	26119373	3R_26119373_SNP [dm3] 3R_30293651_SNP [dm6]	G	C	2.128e^-5	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	2.194e^-5	0.919	INTRON kek5
X	3911217	X_3911217_SNP [dm3] X_4017184_SNP [dm6]	C	A	2.419e^-5	0.919	INTERGENIC
X	3911229	X_3911229_SNP [dm3] X_4017196_SNP [dm6]	T	G	2.419e^-5	0.919	INTERGENIC
X	11151575	X_11151575_SNP [dm3] X_11257542_SNP [dm6]	T	C	2.425e^-5	0.919	INTRON CG44422
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	2.441e^-5	0.919	INTERGENIC
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	2.822e^-5	0.919	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	2.924e^-5	0.919	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	2.982e^-5	0.919	INTRON Pxn
X	2794934	X_2794934_SNP [dm3] X_2900901_SNP [dm6]	A	C	3.018e^-5	0.919	INTRON kirre
X	3911242	X_3911242_DEL [dm3] X_4017209_DEL [dm6]	TAATATCAGT	T	3.061e^-5	0.919	INTERGENIC
3L	15737816	3L_15737816_SNP [dm3] 3L_15744716_SNP [dm6]	A	T	3.126e^-5	0.919	INTERGENIC
3R	17993103	3R_17993103_SNP [dm3] 3R_22167381_SNP [dm6]	G	C	3.277e^-5	0.919	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	16433813	3L_16433813_SNP [dm3] 3L_16440713_SNP [dm6]	G	A	3.659e^-5	0.919	INTRON CG33158 & 1 other
X	12940092	X_12940092_SNP [dm3] X_13046059_SNP [dm6]	T	G	3.726e^-5	0.919	INTRON rad
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	3.968e^-5	0.919	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	4.166e^-5	0.919	DOWNSTREAM CG32032 INTERGENIC
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	4.386e^-5	0.919	INTRON salr	regulatory region REDfly_CRMs
3R	24807557	3R_24807557_SNP [dm3] 3R_28981835_SNP [dm6]	C	T	4.541e^-5	0.919	INTERGENIC
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	4.664e^-5	0.919	INTRON CG42342
X	3911227	X_3911227_SNP [dm3] X_4017194_SNP [dm6]	A	T	4.712e^-5	0.919	INTERGENIC
3L	7061417	3L_7061417_SNP [dm3] 3L_7068317_SNP [dm6]	G	A	4.776e^-5	0.919	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	4.861e^-5	0.919	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	4.861e^-5	0.919	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	4.861e^-5	0.919	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	4.861e^-5	0.919	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	4.861e^-5	0.919	INTERGENIC
3R	9196495	3R_9196495_SNP [dm3] 3R_13370773_SNP [dm6]	A	G	4.936e^-5	0.919	DOWNSTREAM CheA87a INTRON Lip3
3R	24691184	3R_24691184_SNP [dm3] 3R_28865462_SNP [dm6]	G	T	4.957e^-5	0.919	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14382716	X_14382716_SNP [dm3] X_14488683_SNP [dm6]	T	C	4.987e^-5	0.919	INTERGENIC
2L	4902338	2L_4902338_SNP [dm3] 2L_4902338_SNP [dm6]	T	C	5.075e^-5	0.919	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	5.178e^-5	0.919	INTRON Pdk
3L	7904156	3L_7904156_SNP [dm3] 3L_7911056_SNP [dm6]	G	T	5.314e^-5	0.919	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13591362	3R_13591362_SNP [dm3] 3R_17765640_SNP [dm6]	G	A	5.330e^-5	0.919	INTERGENIC
2R	7310122	2R_7310122_SNP [dm3] 2R_11422617_SNP [dm6]	G	C	5.369e^-5	0.919	INTRON Drip
2L	14352150	2L_14352150_SNP [dm3] 2L_14352150_SNP [dm6]	A	C	5.433e^-5	0.919	UTR_5_PRIME CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
3L	1192482	3L_1192482_SNP [dm3] 3L_1192482_SNP [dm6]	T	A	5.484e^-5	0.919	INTRON Trh	TF binding site mE1_TFBS_chinmo
3L	1192494	3L_1192494_SNP [dm3] 3L_1192494_SNP [dm6]	C	T	5.484e^-5	0.919	INTRON Trh	TF binding site mE1_TFBS_chinmo
2L	5372497	2L_5372497_DEL [dm3] 2L_5372497_DEL [dm6]	CAGAGCCG	C	5.497e^-5	0.919	INTERGENIC
3R	12426591	3R_12426591_SNP [dm3] 3R_16600869_SNP [dm6]	C	A	5.519e^-5	0.919	INTRON CG10345
2R	6452247	2R_6452247_SNP [dm3] 2R_10564742_SNP [dm6]	C	T	5.539e^-5	0.919	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	4587438	3L_4587438_SNP [dm3] 3L_4587438_SNP [dm6]	T	C	5.622e^-5	0.919	INTRON CG42540
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	5.676e^-5	0.919	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	24289988	3R_24289988_SNP [dm3] 3R_28464266_SNP [dm6]	C	T	5.736e^-5	0.919	INTRON beat-VI
3R	25114806	3R_25114806_SNP [dm3] 3R_29289084_SNP [dm6]	T	C	5.879e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25834938	3R_25834938_SNP [dm3] 3R_30009216_SNP [dm6]	G	A	5.951e^-5	0.919	UPSTREAM CG7912 INTRON Nlp
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	6.059e^-5	0.919	INTRON bru-3
3R	15456508	3R_15456508_SNP [dm3] 3R_19630786_SNP [dm6]	T	C	6.143e^-5	0.919	INTRON CG6231
3R	9151242	3R_9151242_SNP [dm3] 3R_13325520_SNP [dm6]	T	A	6.210e^-5	0.919	INTERGENIC
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	6.686e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9088629	3L_9088629_SNP [dm3] 3L_9095529_SNP [dm6]	C	G	6.716e^-5	0.919	DOWNSTREAM CG32032 INTERGENIC
3L	16433911	3L_16433911_SNP [dm3] 3L_16440811_SNP [dm6]	A	T	6.842e^-5	0.919	INTRON CG33158 & 1 other
3R	25365840	3R_25365840_SNP [dm3] 3R_29540118_SNP [dm6]	T	C	7.131e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19388879	3L_19388879_SNP [dm3] 3L_19395779_SNP [dm6]	G	C	7.293e^-5	0.919	INTRON CG32206
3L	1390461	3L_1390461_SNP [dm3] 3L_1390461_SNP [dm6]	A	T	7.382e^-5	0.919	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	19388797	3L_19388797_SNP [dm3] 3L_19395697_SNP [dm6]	A	G	7.413e^-5	0.919	INTRON CG32206
3R	9193779	3R_9193779_SNP [dm3] 3R_13368057_SNP [dm6]	G	A	7.418e^-5	0.919	SYNONYMOUS_CODING Dic1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23922182	3R_23922182_SNP [dm3] 3R_28096460_SNP [dm6]	A	T	7.538e^-5	0.919	INTERGENIC
3L	9088625	3L_9088625_SNP [dm3] 3L_9095525_SNP [dm6]	C	T	7.571e^-5	0.919	DOWNSTREAM CG32032 INTERGENIC
3L	16433825	3L_16433825_SNP [dm3] 3L_16440725_SNP [dm6]	A	G	7.619e^-5	0.919	INTRON CG33158 & 1 other
3R	9385445	3R_9385445_SNP [dm3] 3R_13559723_SNP [dm6]	T	A	7.895e^-5	0.919	INTERGENIC
3R	9385447	3R_9385447_SNP [dm3] 3R_13559725_SNP [dm6]	C	T	7.895e^-5	0.919	INTERGENIC
3L	9081917	3L_9081917_SNP [dm3] 3L_9088817_SNP [dm6]	C	T	7.944e^-5	0.919	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9081928	3L_9081928_SNP [dm3] 3L_9088828_SNP [dm6]	A	C	7.944e^-5	0.919	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9082021	3L_9082021_SNP [dm3] 3L_9088921_SNP [dm6]	A	T	7.944e^-5	0.919	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	8.016e^-5	0.919	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	8.016e^-5	0.919	INTRON CG11883
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	8.205e^-5	0.919	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	12135321	2L_12135321_SNP [dm3] 2L_12135321_SNP [dm6]	T	G	8.340e^-5	0.919	INTERGENIC
2R	12345223	2R_12345223_INS [dm3] 2R_16457718_INS [dm6]	G	GG	8.387e^-5	0.919	INTERGENIC
3R	24355427	3R_24355427_SNP [dm3] 3R_28529705_SNP [dm6]	A	G	8.394e^-5	0.919	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	24359452	3R_24359452_SNP [dm3] 3R_28533730_SNP [dm6]	G	A	8.394e^-5	0.919	INTRON Ppn
3R	24360688	3R_24360688_SNP [dm3] 3R_28534966_SNP [dm6]	T	G	8.394e^-5	0.919	INTRON Ppn
3R	24362526	3R_24362526_SNP [dm3] 3R_28536804_SNP [dm6]	A	T	8.394e^-5	0.919	INTRON Ppn
2R	12366379	2R_12366379_SNP [dm3] 2R_16478874_SNP [dm6]	T	C	8.400e^-5	0.919	INTERGENIC
3R	14135128	3R_14135128_SNP [dm3] 3R_18309406_SNP [dm6]	T	A	9.182e^-5	0.919	START_GAINED PKD UTR_5_PRIME PKD
3L	3188583	3L_3188583_SNP [dm3] 3L_3188583_SNP [dm6]	A	G	9.207e^-5	0.919	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	24316014	3R_24316014_SNP [dm3] 3R_28490292_SNP [dm6]	T	A	9.310e^-5	0.919	INTRON Dhc98D
3L	16433660	3L_16433660_SNP [dm3] 3L_16440560_SNP [dm6]	A	C	9.586e^-5	0.919	INTRON CG33158 & 1 other
2R	9867005	2R_9867005_SNP [dm3] 2R_13979500_SNP [dm6]	A	C	9.615e^-5	0.919	START_GAINED CG6701 UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13837645	3L_13837645_SNP [dm3] 3L_13844545_SNP [dm6]	A	T	9.736e^-5	0.919	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24327835	3R_24327835_SNP [dm3] 3R_28502113_SNP [dm6]	C	T	9.877e^-5	0.919	INTRON Dhc98D
X	18213027	X_18213027_SNP [dm3] X_18318994_SNP [dm6]	T	G	1.030e^-4	0.919	INTRON CG6023
3R	10312367	3R_10312367_SNP [dm3] 3R_14486645_SNP [dm6]	T	C	1.032e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13840140	3L_13840140_SNP [dm3] 3L_13847040_SNP [dm6]	C	G	1.042e^-4	0.919	SYNONYMOUS_CODING Hml
3R	15604558	3R_15604558_SNP [dm3] 3R_19778836_SNP [dm6]	G	T	1.048e^-4	0.919	NON_SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_sens
3R	26718585	3R_26718585_SNP [dm3] 3R_30892863_SNP [dm6]	C	G	1.053e^-4	0.919	INTERGENIC
2L	8941919	2L_8941919_SNP [dm3] 2L_8941919_SNP [dm6]	A	G	1.073e^-4	0.919	UTR_5_PRIME CG9510 UPSTREAM CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
3R	26974876	3R_26974876_SNP [dm3] 3R_31149154_SNP [dm6]	A	T	1.074e^-4	0.919	INTRON Gycbeta100B
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	1.095e^-4	0.919	INTRON Dscam4
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	1.098e^-4	0.919	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12953328	X_12953328_SNP [dm3] X_13059295_SNP [dm6]	T	A	1.116e^-4	0.919	INTRON rad
X	14382570	X_14382570_SNP [dm3] X_14488537_SNP [dm6]	T	A	1.127e^-4	0.919	INTERGENIC
3R	16738656	3R_16738656_INS [dm3] 3R_20912934_INS [dm6]	T	TCT	1.128e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	1.130e^-4	0.919	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	1.130e^-4	0.919	INTRON CG11883
2L	5372509	2L_5372509_SNP [dm3] 2L_5372509_SNP [dm6]	T	C	1.131e^-4	0.919	INTERGENIC
3L	16433835	3L_16433835_SNP [dm3] 3L_16440735_SNP [dm6]	G	A	1.144e^-4	0.919	INTRON CG33158 & 1 other
X	11151581	X_11151581_SNP [dm3] X_11257548_SNP [dm6]	T	C	1.187e^-4	0.919	INTRON CG44422
2R	8352009	2R_8352009_SNP [dm3] 2R_12464504_SNP [dm6]	T	C	1.199e^-4	0.919	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8622612	2R_8622612_SNP [dm3] 2R_12735107_SNP [dm6]	C	T	1.204e^-4	0.919	SYNONYMOUS_CODING CG42663
3R	24335537	3R_24335537_SNP [dm3] 3R_28509815_SNP [dm6]	A	T	1.222e^-4	0.919	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3R	24335684	3R_24335684_SNP [dm3] 3R_28509962_SNP [dm6]	A	G	1.222e^-4	0.919	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	24337002	3R_24337002_SNP [dm3] 3R_28511280_SNP [dm6]	T	A	1.222e^-4	0.919	SYNONYMOUS_CODING Dhc98D
3R	24347146	3R_24347146_SNP [dm3] 3R_28521424_SNP [dm6]	T	G	1.222e^-4	0.919	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
3R	24359511	3R_24359511_SNP [dm3] 3R_28533789_SNP [dm6]	A	G	1.222e^-4	0.919	INTRON Ppn
3R	24359177	3R_24359177_SNP [dm3] 3R_28533455_SNP [dm6]	T	A	1.239e^-4	0.919	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
3R	24362176	3R_24362176_SNP [dm3] 3R_28536454_SNP [dm6]	T	C	1.239e^-4	0.919	INTRON Ppn
3R	24366275	3R_24366275_SNP [dm3] 3R_28540553_SNP [dm6]	C	T	1.239e^-4	0.919	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	1.265e^-4	0.919	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	1.265e^-4	0.919	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	5249270	2L_5249270_SNP [dm3] 2L_5249270_SNP [dm6]	T	A	1.268e^-4	0.919	INTRON tkv	TF binding site mE1_TFBS_cnc
3R	7745399	3R_7745399_INS [dm3] 3R_11919677_INS [dm6]	A	AA	1.278e^-4	0.919	INTRON Cad87A
3L	13840106	3L_13840106_SNP [dm3] 3L_13847006_SNP [dm6]	T	C	1.306e^-4	0.919	INTRON Hml
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	1.323e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	1.323e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	1.323e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18724896	3R_18724896_SNP [dm3] 3R_22899174_SNP [dm6]	T	C	1.337e^-4	0.919	UPSTREAM klg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11232618	X_11232618_INS [dm3] X_11338585_INS [dm6]	A	AAA	1.340e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	1.341e^-4	0.919	INTRON jvl
2L	15740889	2L_15740889_SNP [dm3] 2L_15740889_SNP [dm6]	T	A	1.342e^-4	0.919	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18724904	3R_18724904_SNP [dm3] 3R_22899182_SNP [dm6]	G	A	1.362e^-4	0.919	UPSTREAM klg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6470230	2R_6470230_SNP [dm3] 2R_10582725_SNP [dm6]	T	A	1.372e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470328	2R_6470328_SNP [dm3] 2R_10582823_SNP [dm6]	C	T	1.372e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470331	2R_6470331_SNP [dm3] 2R_10582826_SNP [dm6]	A	G	1.372e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470398	2R_6470398_DEL [dm3] 2R_10582893_DEL [dm6]	TT	T	1.372e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470408	2R_6470408_SNP [dm3] 2R_10582903_SNP [dm6]	T	A	1.372e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	1.374e^-4	0.919	EXON CR45276	TF binding site mE1_TFBS_cad
3R	13626819	3R_13626819_SNP [dm3] 3R_17801097_SNP [dm6]	G	T	1.376e^-4	0.919	DOWNSTREAM CG17806 INTRON CG17803
3R	9005935	3R_9005935_SNP [dm3] 3R_13180213_SNP [dm6]	A	C	1.382e^-4	0.919	INTERGENIC
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	1.400e^-4	0.919	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24335507	3R_24335507_SNP [dm3] 3R_28509785_SNP [dm6]	C	T	1.412e^-4	0.919	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3R	24359956	3R_24359956_SNP [dm3] 3R_28534234_SNP [dm6]	G	T	1.412e^-4	0.919	INTRON Ppn
3R	24361575	3R_24361575_SNP [dm3] 3R_28535853_SNP [dm6]	A	G	1.412e^-4	0.919	INTRON Ppn
3R	24362676	3R_24362676_SNP [dm3] 3R_28536954_SNP [dm6]	A	G	1.412e^-4	0.919	INTRON Ppn
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	1.416e^-4	0.919	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	18178125	3R_18178125_SNP [dm3] 3R_22352403_SNP [dm6]	C	T	1.421e^-4	0.919	NON_SYNONYMOUS_CODING rdhB
3L	7984136	3L_7984136_SNP [dm3] 3L_7991036_SNP [dm6]	T	C	1.429e^-4	0.919	INTRON nmo	TF binding site mE1_TFBS_cnc
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	1.432e^-4	0.919	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2622023	3L_2622023_INS [dm3] 3L_2622023_INS [dm6]	A	AGGTCTCA	1.444e^-4	0.919	INTRON Pxn
2R	15201608	2R_15201608_SNP [dm3] 2R_19314103_SNP [dm6]	A	T	1.476e^-4	0.919	INTRON Rgk1	TF binding site BDTNP1_TFBS_twi
2R	17102205	2R_17102205_SNP [dm3] 2R_21214700_SNP [dm6]	A	G	1.476e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
2R	17102221	2R_17102221_SNP [dm3] 2R_21214716_SNP [dm6]	T	C	1.476e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
2R	17102222	2R_17102222_SNP [dm3] 2R_21214717_SNP [dm6]	C	T	1.476e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
2R	18071531	2R_18071531_SNP [dm3] 2R_22184026_SNP [dm6]	G	A	1.476e^-4	0.919	SYNONYMOUS_CODING MED16	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19089288	3R_19089288_SNP [dm3] 3R_23263566_SNP [dm6]	A	T	1.476e^-4	0.919	UTR_3_PRIME orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	1.483e^-4	0.919	UTR_3_PRIME S DOWNSTREAM S
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	1.486e^-4	0.919	INTERGENIC
3R	16589156	3R_16589156_SNP [dm3] 3R_20763434_SNP [dm6]	A	G	1.500e^-4	0.919	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	1.506e^-4	0.919	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	16433661	3L_16433661_SNP [dm3] 3L_16440561_SNP [dm6]	T	A	1.506e^-4	0.919	INTRON CG33158 & 1 other
3L	16433664	3L_16433664_SNP [dm3] 3L_16440564_SNP [dm6]	T	G	1.506e^-4	0.919	INTRON CG33158 & 1 other
3L	16433665	3L_16433665_SNP [dm3] 3L_16440565_SNP [dm6]	A	G	1.506e^-4	0.919	INTRON CG33158 & 1 other
3L	16433667	3L_16433667_DEL [dm3] 3L_16440567_DEL [dm6]	GTCATCATC	G	1.506e^-4	0.919	INTRON CG33158 & 1 other
3R	24362334	3R_24362334_SNP [dm3] 3R_28536612_SNP [dm6]	T	C	1.539e^-4	0.919	INTRON Ppn
2R	19478211	2R_19478211_SNP [dm3] 2R_23590688_SNP [dm6]	A	C	1.540e^-4	0.919	INTRON apt
2L	12355378	2L_12355378_SNP [dm3] 2L_12355378_SNP [dm6]	A	C	1.550e^-4	0.919	INTRON bru-2
X	6320110	X_6320110_SNP [dm3] X_6426077_SNP [dm6]	T	A	1.551e^-4	0.919	INTRON CG42340
2R	7052565	2R_7052565_SNP [dm3] 2R_11165060_SNP [dm6]	G	A	1.571e^-4	0.919	INTRON shn & 1 other
X	20405927	X_20405927_SNP [dm3] X_20534900_SNP [dm6]	G	T	1.584e^-4	0.919	INTERGENIC
3L	20070404	3L_20070404_SNP [dm3] 3L_20077304_SNP [dm6]	G	T	1.600e^-4	0.919	INTRON sNPF-R
3R	9443986	3R_9443986_SNP [dm3] 3R_13618264_SNP [dm6]	T	C	1.602e^-4	0.919	EXON CR45680
3R	25015447	3R_25015447_SNP [dm3] 3R_29189725_SNP [dm6]	G	T	1.612e^-4	0.919	INTRON CG14509
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	1.624e^-4	0.919	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	1.624e^-4	0.919	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	1.624e^-4	0.919	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15566523	2R_15566523_SNP [dm3] 2R_19679018_SNP [dm6]	G	T	1.633e^-4	0.919	INTERGENIC
2L	3046926	2L_3046926_SNP [dm3] 2L_3046926_SNP [dm6]	A	T	1.635e^-4	0.919	DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	1.638e^-4	0.919	INTRON CG9967 & 1 other
3R	22900741	3R_22900741_SNP [dm3] 3R_27075019_SNP [dm6]	G	A	1.661e^-4	0.919	UPSTREAM CG14257 INTERGENIC
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	1.661e^-4	0.919	INTRON CG15431
2R	7804260	2R_7804260_SNP [dm3] 2R_11916755_SNP [dm6]	A	G	1.662e^-4	0.919	INTERGENIC
3R	18724893	3R_18724893_SNP [dm3] 3R_22899171_SNP [dm6]	T	C	1.694e^-4	0.919	UPSTREAM klg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13949629	3L_13949629_SNP [dm3] 3L_13956529_SNP [dm6]	C	T	1.695e^-4	0.919	INTRON CG32137
3L	5935829	3L_5935829_SNP [dm3] 3L_5942729_SNP [dm6]	G	A	1.700e^-4	0.919	INTRON CG33993
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	1.710e^-4	0.919	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	1.710e^-4	0.919	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	1.710e^-4	0.919	INTERGENIC
3R	14430722	3R_14430722_SNP [dm3] 3R_18605000_SNP [dm6]	C	T	1.711e^-4	0.919	INTRON qin & 1 other
X	12130287	X_12130287_SNP [dm3] X_12236254_SNP [dm6]	A	C	1.714e^-4	0.919	UPSTREAM CG32655 INTRON Ten-a
3R	24339115	3R_24339115_SNP [dm3] 3R_28513393_SNP [dm6]	T	G	1.729e^-4	0.919	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19381503	3R_19381503_SNP [dm3] 3R_23555781_SNP [dm6]	G	A	1.733e^-4	0.919	NON_SYNONYMOUS_CODING CG10164
2R	17102365	2R_17102365_SNP [dm3] 2R_21214860_SNP [dm6]	T	G	1.743e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
X	3658246	X_3658246_SNP [dm3] X_3764213_SNP [dm6]	A	G	1.750e^-4	0.919	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	1.753e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4519489	X_4519489_SNP [dm3] X_4625456_SNP [dm6]	C	T	1.753e^-4	0.919	SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26664675	3R_26664675_SNP [dm3] 3R_30838953_SNP [dm6]	G	A	1.762e^-4	0.919	NON_SYNONYMOUS_CODING CG15544
3R	24370825	3R_24370825_SNP [dm3] 3R_28545103_SNP [dm6]	A	G	1.766e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	26664274	3R_26664274_SNP [dm3] 3R_30838552_SNP [dm6]	G	A	1.769e^-4	0.919	SYNONYMOUS_CODING CG15544
X	19046444	X_19046444_INS [dm3] X_19152411_INS [dm6]	A	AA	1.775e^-4	0.919	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6555513	2R_6555513_SNP [dm3] 2R_10668008_SNP [dm6]	A	C	1.795e^-4	0.919	INTERGENIC
3R	24347242	3R_24347242_SNP [dm3] 3R_28521520_SNP [dm6]	A	G	1.795e^-4	0.919	INTRON Ppn
3R	16589066	3R_16589066_SNP [dm3] 3R_20763344_SNP [dm6]	A	T	1.807e^-4	0.919	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	1.809e^-4	0.919	DOWNSTREAM TotZ EXON CR44048
3R	19183213	3R_19183213_SNP [dm3] 3R_23357491_SNP [dm6]	C	T	1.811e^-4	0.919	SYNONYMOUS_CODING Sec13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	12243303	X_12243303_SNP [dm3] X_12349270_SNP [dm6]	T	G	1.821e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24353929	3R_24353929_SNP [dm3] 3R_28528207_SNP [dm6]	C	A	1.829e^-4	0.919	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15347661	2L_15347661_SNP [dm3] 2L_15347661_SNP [dm6]	G	C	1.837e^-4	0.919	INTERGENIC
2L	14753114	2L_14753114_SNP [dm3] 2L_14753114_SNP [dm6]	T	A	1.840e^-4	0.919	INTERGENIC
3R	16452801	3R_16452801_SNP [dm3] 3R_20627079_SNP [dm6]	C	G	1.842e^-4	0.919	UTR_3_PRIME H
2R	8093873	2R_8093873_SNP [dm3] 2R_12206368_SNP [dm6]	C	A	1.861e^-4	0.919	EXON CR45276	TF binding site mE1_TFBS_cad
2R	16463767	2R_16463767_SNP [dm3] 2R_20576262_SNP [dm6]	T	G	1.862e^-4	0.919	INTRON qsm
2R	16463777	2R_16463777_DEL [dm3] 2R_20576272_DEL [dm6]	CCCCCAATC	C	1.862e^-4	0.919	INTRON qsm
X	6283282	X_6283282_SNP [dm3] X_6389249_SNP [dm6]	G	A	1.875e^-4	0.919	INTERGENIC
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	1.878e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2677101	X_2677101_SNP [dm3] X_2783068_SNP [dm6]	G	A	1.879e^-4	0.919	UTR_3_PRIME CG32795 INTRON kirre
3R	27335752	3R_27335752_SNP [dm3] 3R_31510030_SNP [dm6]	A	T	1.883e^-4	0.919	INTERGENIC
3R	25173065	3R_25173065_SNP [dm3] 3R_29347343_SNP [dm6]	C	G	1.901e^-4	0.919	INTERGENIC
3L	5376777	3L_5376777_SNP [dm3] 3L_5383677_SNP [dm6]	C	T	1.903e^-4	0.919	UPSTREAM Ir64a INTERGENIC
2R	9866986	2R_9866986_SNP [dm3] 2R_13979481_SNP [dm6]	T	G	1.904e^-4	0.919	UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9201815	3R_9201815_SNP [dm3] 3R_13376093_SNP [dm6]	T	G	1.911e^-4	0.919	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10262594	3L_10262594_SNP [dm3] 3L_10269494_SNP [dm6]	A	C	1.915e^-4	0.919	EXON CR45242	regulatory region REDfly_CRMs
2L	5456162	2L_5456162_SNP [dm3] 2L_5456162_SNP [dm6]	C	T	1.923e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19308043	3R_19308043_SNP [dm3] 3R_23482321_SNP [dm6]	T	C	1.926e^-4	0.919	SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19308079	3R_19308079_SNP [dm3] 3R_23482357_SNP [dm6]	C	A	1.926e^-4	0.919	NON_SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6142268	2R_6142268_SNP [dm3] 2R_10254763_SNP [dm6]	T	C	1.944e^-4	0.919	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad
2R	10510194	2R_10510194_SNP [dm3] 2R_14622689_SNP [dm6]	A	G	1.945e^-4	0.919	UPSTREAM snoRNA:Me18S-G1952 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	24610942	3R_24610942_SNP [dm3] 3R_28785220_SNP [dm6]	T	C	1.953e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	1.975e^-4	0.919	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	1.975e^-4	0.919	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	1.980e^-4	0.919	INTRON CG15249
X	9449491	X_9449491_SNP [dm3] X_9555458_SNP [dm6]	G	C	1.986e^-4	0.919	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
X	19997800	X_19997800_SNP [dm3] X_20103767_SNP [dm6]	C	T	1.994e^-4	0.919	INTERGENIC
3R	24355143	3R_24355143_SNP [dm3] 3R_28529421_SNP [dm6]	G	A	2.006e^-4	0.919	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24363476	3R_24363476_SNP [dm3] 3R_28537754_SNP [dm6]	C	T	2.006e^-4	0.919	INTRON Ppn
3L	1192500	3L_1192500_SNP [dm3] 3L_1192500_SNP [dm6]	G	A	2.008e^-4	0.919	INTRON Trh	TF binding site mE1_TFBS_chinmo
3R	24314572	3R_24314572_SNP [dm3] 3R_28488850_SNP [dm6]	T	C	2.010e^-4	0.919	INTRON Dhc98D
2L	9014159	2L_9014159_SNP [dm3] 2L_9014159_SNP [dm6]	C	T	2.010e^-4	0.919	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	6804574	X_6804574_DEL [dm3] X_6910541_DEL [dm6]	TT	T	2.018e^-4	0.919	INTRON CG14431
3R	24338230	3R_24338230_SNP [dm3] 3R_28512508_SNP [dm6]	C	T	2.029e^-4	0.919	SYNONYMOUS_CODING Dhc98D
3R	24350886	3R_24350886_SNP [dm3] 3R_28525164_SNP [dm6]	C	T	2.029e^-4	0.919	NON_SYNONYMOUS_CODING Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24362976	3R_24362976_SNP [dm3] 3R_28537254_SNP [dm6]	C	A	2.029e^-4	0.919	INTRON Ppn
3R	24363590	3R_24363590_SNP [dm3] 3R_28537868_SNP [dm6]	T	C	2.029e^-4	0.919	INTRON Ppn
3R	26664328	3R_26664328_SNP [dm3] 3R_30838606_SNP [dm6]	A	C	2.036e^-4	0.919	SYNONYMOUS_CODING CG15544
2L	4469087	2L_4469087_SNP [dm3] 2L_4469087_SNP [dm6]	C	A	2.051e^-4	0.919	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13701279	3R_13701279_SNP [dm3] 3R_17875557_SNP [dm6]	T	C	2.066e^-4	0.919	INTRON Rim
3R	13701311	3R_13701311_SNP [dm3] 3R_17875589_SNP [dm6]	T	G	2.066e^-4	0.919	INTRON Rim
3R	25015666	3R_25015666_SNP [dm3] 3R_29189944_SNP [dm6]	T	G	2.079e^-4	0.919	INTRON CG14509
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	2.080e^-4	0.919	INTRON CG33158 & 1 other
3L	13373022	3L_13373022_SNP [dm3] 3L_13379922_SNP [dm6]	C	T	2.084e^-4	0.919	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10272292	3R_10272292_SNP [dm3] 3R_14446570_SNP [dm6]	C	T	2.090e^-4	0.919	INTRON cv-c	TF binding site BDTNP1_TFBS_da
3L	13837630	3L_13837630_SNP [dm3] 3L_13844530_SNP [dm6]	T	C	2.099e^-4	0.919	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16738855	3R_16738855_SNP [dm3] 3R_20913133_SNP [dm6]	G	T	2.108e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
3R	23908833	3R_23908833_SNP [dm3] 3R_28083111_SNP [dm6]	A	T	2.121e^-4	0.919	INTRON CG34362
3L	19388822	3L_19388822_SNP [dm3] 3L_19395722_SNP [dm6]	C	G	2.131e^-4	0.919	INTRON CG32206
3R	13718409	3R_13718409_SNP [dm3] 3R_17892687_SNP [dm6]	C	T	2.132e^-4	0.919	NON_SYNONYMOUS_CODING Rim INTRON Rim
3R	12211145	3R_12211145_SNP [dm3] 3R_16385423_SNP [dm6]	T	G	2.154e^-4	0.919	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	1279311	2L_1279311_SNP [dm3] 2L_1279311_SNP [dm6]	T	C	2.175e^-4	0.919	INTRON robo3
3R	16963996	3R_16963996_SNP [dm3] 3R_21138274_SNP [dm6]	A	G	2.175e^-4	0.919	UTR_5_PRIME meigo UPSTREAM meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18581683	3R_18581683_SNP [dm3] 3R_22755961_SNP [dm6]	C	T	2.176e^-4	0.919	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_Trl
2R	17560453	2R_17560453_SNP [dm3] 2R_21672948_SNP [dm6]	T	C	2.196e^-4	0.919	DOWNSTREAM CG15676 INTERGENIC
3R	19645351	3R_19645351_SNP [dm3] 3R_23819629_SNP [dm6]	T	G	2.218e^-4	0.919	UPSTREAM eIF4G2 & 2 others INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	27049096	3R_27049096_SNP [dm3] 3R_31223374_SNP [dm6]	T	G	2.223e^-4	0.919	INTRON CG12054	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7104425	2L_7104425_SNP [dm3] 2L_7104425_SNP [dm6]	T	G	2.234e^-4	0.919	INTRON Pvf3
3L	13650720	3L_13650720_SNP [dm3] 3L_13657620_SNP [dm6]	T	C	2.237e^-4	0.919	INTRON bru-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	13650043	3L_13650043_SNP [dm3] 3L_13656943_SNP [dm6]	T	C	2.259e^-4	0.919	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19091722	2R_19091722_SNP [dm3] 2R_23204199_SNP [dm6]	C	A	2.270e^-4	0.919	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14239248	3L_14239248_SNP [dm3] 3L_14246148_SNP [dm6]	T	C	2.281e^-4	0.919	UPSTREAM CR44561 INTRON CR44560
2R	3890482	2R_3890482_SNP [dm3] 2R_8002977_SNP [dm6]	G	A	2.295e^-4	0.919	UPSTREAM CG11191 INTERGENIC
3L	4211912	3L_4211912_SNP [dm3] 3L_4211912_SNP [dm6]	A	T	2.299e^-4	0.919	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
2L	11638650	2L_11638650_SNP [dm3] 2L_11638650_SNP [dm6]	A	C	2.306e^-4	0.919	INTERGENIC
X	14382798	X_14382798_SNP [dm3] X_14488765_SNP [dm6]	A	G	2.313e^-4	0.919	INTERGENIC
2R	17102345	2R_17102345_INS [dm3] 2R_21214840_INS [dm6]	C	CGGTCGGTTTATTAAC...	2.320e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
3R	27249859	3R_27249859_SNP [dm3] 3R_31424137_SNP [dm6]	G	A	2.320e^-4	0.919	INTRON Gprk2
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	2.356e^-4	0.919	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10511198	2R_10511198_INS [dm3] 2R_14623693_INS [dm6]	C	ACA	2.362e^-4	0.919	UPSTREAM snoRNA:Me28S-G2703b & 2 others DOWNSTREAM snoRNA:Me18S-G1952 & 3 others EXON Uhg5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	2.380e^-4	0.919	INTRON dlp	TF binding site mE1_TFBS_HSA
3L	14642130	3L_14642130_INS [dm3] 3L_14649030_INS [dm6]	T	TTGT	2.383e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9930184	2R_9930184_SNP [dm3] 2R_14042679_SNP [dm6]	T	A	2.389e^-4	0.919	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930225	2R_9930225_SNP [dm3] 2R_14042720_SNP [dm6]	A	T	2.389e^-4	0.919	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930232	2R_9930232_SNP [dm3] 2R_14042727_SNP [dm6]	G	T	2.389e^-4	0.919	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	9196004	3R_9196004_SNP [dm3] 3R_13370282_SNP [dm6]	C	A	2.393e^-4	0.919	UTR_3_PRIME Lip3 & 1 other
3L	9088478	3L_9088478_SNP [dm3] 3L_9095378_SNP [dm6]	G	C	2.393e^-4	0.919	DOWNSTREAM CG32032 INTERGENIC
3L	7908820	3L_7908820_SNP [dm3] 3L_7915720_SNP [dm6]	A	G	2.396e^-4	0.919	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26119437	3R_26119437_SNP [dm3] 3R_30293715_SNP [dm6]	A	G	2.405e^-4	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26119443	3R_26119443_SNP [dm3] 3R_30293721_SNP [dm6]	A	G	2.405e^-4	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12355507	2L_12355507_SNP [dm3] 2L_12355507_SNP [dm6]	A	T	2.406e^-4	0.919	UPSTREAM CG17010 INTRON bru-2
3R	8982326	3R_8982326_SNP [dm3] 3R_13156604_SNP [dm6]	G	T	2.408e^-4	0.919	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_twi
2L	12447031	2L_12447031_SNP [dm3] 2L_12447031_SNP [dm6]	C	T	2.415e^-4	0.919	SYNONYMOUS_CODING CG5421
2L	8309389	2L_8309389_SNP [dm3] 2L_8309389_SNP [dm6]	C	A	2.421e^-4	0.919	SYNONYMOUS_CODING CG7818 DOWNSTREAM CG7810	TF binding site mE1_TFBS_sens
X	3899950	X_3899950_SNP [dm3] X_4005917_SNP [dm6]	A	G	2.468e^-4	0.919	INTERGENIC
2L	6541066	2L_6541066_SNP [dm3] 2L_6541066_SNP [dm6]	A	G	2.494e^-4	0.919	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	24370832	3R_24370832_SNP [dm3] 3R_28545110_SNP [dm6]	T	A	2.495e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	12313069	3R_12313069_DEL [dm3] 3R_16487347_DEL [dm6]	TA	T	2.525e^-4	0.919	INTRON Cad89D
2L	1279284	2L_1279284_SNP [dm3] 2L_1279284_SNP [dm6]	T	G	2.525e^-4	0.919	INTRON robo3
3R	13626942	3R_13626942_SNP [dm3] 3R_17801220_SNP [dm6]	T	A	2.531e^-4	0.919	UTR_5_PRIME CG17803 DOWNSTREAM CG17806
X	18213925	X_18213925_SNP [dm3] X_18319892_SNP [dm6]	T	C	2.544e^-4	0.919	INTRON CG6023	transposable element FlyBase
3R	26974976	3R_26974976_SNP [dm3] 3R_31149254_SNP [dm6]	C	T	2.545e^-4	0.919	INTRON Gycbeta100B
3R	24371240	3R_24371240_SNP [dm3] 3R_28545518_SNP [dm6]	G	A	2.547e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	24371287	3R_24371287_SNP [dm3] 3R_28545565_SNP [dm6]	A	T	2.547e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7938380	3L_7938380_SNP [dm3] 3L_7945280_SNP [dm6]	C	T	2.552e^-4	0.919	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13949480	3L_13949480_SNP [dm3] 3L_13956380_SNP [dm6]	C	T	2.554e^-4	0.919	INTRON CG32137
X	4087136	X_4087136_SNP [dm3] X_4193103_SNP [dm6]	C	G	2.569e^-4	0.919	INTRON Fas2	regulatory region REDfly_CRMs
3L	417974	3L_417974_SNP [dm3] 3L_417974_SNP [dm6]	T	A	2.580e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs
3L	1004576	3L_1004576_SNP [dm3] 3L_1004576_SNP [dm6]	G	A	2.641e^-4	0.919	INTRON trio
2R	9893527	2R_9893527_SNP [dm3] 2R_14006022_SNP [dm6]	T	C	2.674e^-4	0.919	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5373054	2L_5373054_SNP [dm3] 2L_5373054_SNP [dm6]	A	G	2.683e^-4	0.919	INTERGENIC
3L	13837644	3L_13837644_SNP [dm3] 3L_13844544_SNP [dm6]	G	A	2.722e^-4	0.919	NON_SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	2.731e^-4	0.919	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7909192	3L_7909192_SNP [dm3] 3L_7916092_SNP [dm6]	C	T	2.748e^-4	0.919	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909196	3L_7909196_SNP [dm3] 3L_7916096_SNP [dm6]	T	C	2.748e^-4	0.919	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909198	3L_7909198_SNP [dm3] 3L_7916098_SNP [dm6]	T	G	2.748e^-4	0.919	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18724892	3R_18724892_SNP [dm3] 3R_22899170_SNP [dm6]	A	T	2.750e^-4	0.919	UPSTREAM klg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16738762	3R_16738762_SNP [dm3] 3R_20913040_SNP [dm6]	T	A	2.751e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25114714	3R_25114714_SNP [dm3] 3R_29288992_SNP [dm6]	T	C	2.753e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24326503	3R_24326503_SNP [dm3] 3R_28500781_SNP [dm6]	G	C	2.776e^-4	0.919	INTRON Dhc98D
3R	24326527	3R_24326527_SNP [dm3] 3R_28500805_SNP [dm6]	T	C	2.776e^-4	0.919	INTRON Dhc98D
3R	24326617	3R_24326617_SNP [dm3] 3R_28500895_SNP [dm6]	A	G	2.776e^-4	0.919	INTRON Dhc98D
3R	24690741	3R_24690741_SNP [dm3] 3R_28865019_SNP [dm6]	T	A	2.783e^-4	0.919	INTRON spg	TF binding site mE1_TFBS_chinmo
2L	6027782	2L_6027782_SNP [dm3] 2L_6027782_SNP [dm6]	A	G	2.801e^-4	0.919	INTRON CG9109
3R	9784390	3R_9784390_SNP [dm3] 3R_13958668_SNP [dm6]	T	A	2.837e^-4	0.919	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9784391	3R_9784391_SNP [dm3] 3R_13958669_SNP [dm6]	T	A	2.837e^-4	0.919	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25806647	3R_25806647_SNP [dm3] 3R_29980925_SNP [dm6]	G	C	2.841e^-4	0.919	INTERGENIC
2L	7631946	2L_7631946_SNP [dm3] 2L_7631946_SNP [dm6]	T	A	2.848e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	4353444	2L_4353444_SNP [dm3] 2L_4353444_SNP [dm6]	C	T	2.855e^-4	0.919	SYNONYMOUS_CODING CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	2.881e^-4	0.919	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9788799	2R_9788799_SNP [dm3] 2R_13901294_SNP [dm6]	T	A	2.889e^-4	0.919	INTRON shot	TF binding site mE1_TFBS_cad
2R	17444688	2R_17444688_SNP [dm3] 2R_21557183_SNP [dm6]	C	T	2.891e^-4	0.919	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19073413	2R_19073413_SNP [dm3] 2R_23185890_SNP [dm6]	G	T	2.891e^-4	0.919	DOWNSTREAM CG13539 INTRON CG34371
3L	6065508	3L_6065508_SNP [dm3] 3L_6072408_SNP [dm6]	T	A	2.896e^-4	0.919	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_sens
2R	14509594	2R_14509594_SNP [dm3] 2R_18622089_SNP [dm6]	G	A	2.896e^-4	0.919	NON_SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11232642	X_11232642_SNP [dm3] X_11338609_SNP [dm6]	T	C	2.907e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
2L	19808445	2L_19808445_SNP [dm3] 2L_19808445_SNP [dm6]	A	C	2.921e^-4	0.919	INTRON sick	TF binding site mE1_TFBS_cad
2R	18725178	2R_18725178_SNP [dm3] 2R_22837655_SNP [dm6]	C	T	2.921e^-4	0.919	DOWNSTREAM CG12490 INTRON CG9825
2L	3191688	2L_3191688_SNP [dm3] 2L_3191688_SNP [dm6]	C	T	2.922e^-4	0.919	INTRON CG34393
3R	24373139	3R_24373139_SNP [dm3] 3R_28547417_SNP [dm6]	A	G	2.928e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9088648	3L_9088648_DEL [dm3] 3L_9095548_DEL [dm6]	AAGA	A	2.941e^-4	0.919	DOWNSTREAM CG32032 INTERGENIC
3L	13134325	3L_13134325_SNP [dm3] 3L_13141225_SNP [dm6]	G	A	2.945e^-4	0.919	INTERGENIC
3R	24293225	3R_24293225_SNP [dm3] 3R_28467503_SNP [dm6]	C	T	2.950e^-4	0.919	INTRON beat-VI
3R	24370594	3R_24370594_SNP [dm3] 3R_28544872_SNP [dm6]	T	C	2.952e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	2.971e^-4	0.919	INTRON CG15431
2L	11638459	2L_11638459_SNP [dm3] 2L_11638459_SNP [dm6]	C	A	2.979e^-4	0.919	INTERGENIC
2R	9867176	2R_9867176_DEL [dm3] 2R_13979671_DEL [dm6]	GTTG	G	2.999e^-4	0.919	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9867168	2R_9867168_SNP [dm3] 2R_13979663_SNP [dm6]	A	G	2.999e^-4	0.919	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9867385	2R_9867385_SNP [dm3] 2R_13979880_SNP [dm6]	A	G	2.999e^-4	0.919	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	3.011e^-4	0.919	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8782901	2R_8782901_SNP [dm3] 2R_12895396_SNP [dm6]	A	G	3.035e^-4	0.919	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4032540	3R_4032540_SNP [dm3] 3R_8206818_SNP [dm6]	G	T	3.045e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13641881	3R_13641881_SNP [dm3] 3R_17816159_SNP [dm6]	G	A	3.045e^-4	0.919	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14184296	3R_14184296_SNP [dm3] 3R_18358574_SNP [dm6]	G	A	3.053e^-4	0.919	INTRON CG15803
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	3.059e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	3.059e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19808461	2L_19808461_SNP [dm3] 2L_19808461_SNP [dm6]	G	T	3.063e^-4	0.919	INTRON sick	TF binding site mE1_TFBS_cad
2L	8818371	2L_8818371_SNP [dm3] 2L_8818371_SNP [dm6]	A	G	3.092e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	8818379	2L_8818379_SNP [dm3] 2L_8818379_SNP [dm6]	T	A	3.092e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	6470393	2R_6470393_SNP [dm3] 2R_10582888_SNP [dm6]	A	T	3.092e^-4	0.919	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2610341	3L_2610341_SNP [dm3] 3L_2610341_SNP [dm6]	G	A	3.107e^-4	0.919	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15085805	3R_15085805_SNP [dm3] 3R_19260083_SNP [dm6]	C	T	3.129e^-4	0.919	UTR_3_PRIME CG14280
3R	15085809	3R_15085809_SNP [dm3] 3R_19260087_SNP [dm6]	T	A	3.129e^-4	0.919	UTR_3_PRIME CG14280
3R	24337692	3R_24337692_SNP [dm3] 3R_28511970_SNP [dm6]	T	G	3.130e^-4	0.919	SYNONYMOUS_CODING Dhc98D
3R	24361001	3R_24361001_SNP [dm3] 3R_28535279_SNP [dm6]	C	T	3.130e^-4	0.919	INTRON Ppn
2R	9930296	2R_9930296_SNP [dm3] 2R_14042791_SNP [dm6]	T	A	3.134e^-4	0.919	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	3.155e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13961332	3R_13961332_SNP [dm3] 3R_18135610_SNP [dm6]	G	T	3.158e^-4	0.919	DOWNSTREAM sr INTERGENIC
2L	12361324	2L_12361324_SNP [dm3] 2L_12361324_SNP [dm6]	G	T	3.167e^-4	0.919	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	17338134	3L_17338134_SNP [dm3] 3L_17345034_SNP [dm6]	A	G	3.169e^-4	0.919	UTR_3_PRIME Mip UPSTREAM brv2
3R	24358818	3R_24358818_SNP [dm3] 3R_28533096_SNP [dm6]	G	A	3.172e^-4	0.919	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2757904	X_2757904_SNP [dm3] X_2863871_SNP [dm6]	G	A	3.176e^-4	0.919	INTRON kirre
2L	12441393	2L_12441393_SNP [dm3] 2L_12441393_SNP [dm6]	C	T	3.190e^-4	0.919	DOWNSTREAM Oatp33Ea & 1 other INTERGENIC
3L	7711967	3L_7711967_SNP [dm3] 3L_7718867_SNP [dm6]	A	T	3.195e^-4	0.919	UPSTREAM CG12262 & 1 other INTRON CG32373
X	6213448	X_6213448_SNP [dm3] X_6319415_SNP [dm6]	A	T	3.198e^-4	0.919	INTRON CG15894
X	19997803	X_19997803_SNP [dm3] X_20103770_SNP [dm6]	A	G	3.199e^-4	0.919	INTERGENIC
2L	8008483	2L_8008483_SNP [dm3] 2L_8008483_SNP [dm6]	G	A	3.201e^-4	0.919	SYNONYMOUS_CODING CG12560
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	3.211e^-4	0.919	UTR_3_PRIME jim
X	11829189	X_11829189_DEL [dm3] X_11935156_DEL [dm6]	GTTTCTGG	G	3.219e^-4	0.919	UTR_3_PRIME cac
3R	17993102	3R_17993102_SNP [dm3] 3R_22167380_SNP [dm6]	T	C	3.221e^-4	0.919	INTRON SKIP	TF binding site mE1_TFBS_Kr
X	3292277	X_3292277_SNP [dm3] X_3398244_SNP [dm6]	A	G	3.223e^-4	0.919	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3045157	2L_3045157_SNP [dm3] 2L_3045157_SNP [dm6]	T	C	3.231e^-4	0.919	INTRON v_2_k05816
3R	17844078	3R_17844078_SNP [dm3] 3R_22018356_SNP [dm6]	G	A	3.247e^-4	0.919	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844082	3R_17844082_SNP [dm3] 3R_22018360_SNP [dm6]	A	C	3.247e^-4	0.919	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844083	3R_17844083_SNP [dm3] 3R_22018361_SNP [dm6]	G	A	3.247e^-4	0.919	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
X	3535725	X_3535725_DEL [dm3] X_3641692_DEL [dm6]	AA	T	3.263e^-4	0.919	INTRON AstA-R1
2L	20026876	2L_20026876_SNP [dm3] 2L_20026876_SNP [dm6]	C	T	3.266e^-4	0.919	INTERGENIC
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	3.279e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18538813	3R_18538813_SNP [dm3] 3R_22713091_SNP [dm6]	A	G	3.294e^-4	0.919	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_chinmo
3L	1629983	3L_1629983_SNP [dm3] 3L_1629983_SNP [dm6]	T	C	3.319e^-4	0.919	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19714680	2R_19714680_SNP [dm3] 2R_23827157_SNP [dm6]	C	T	3.319e^-4	0.919	INTRON CG5549	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16251871	3L_16251871_SNP [dm3] 3L_16258771_SNP [dm6]	T	C	3.320e^-4	0.919	DOWNSTREAM CG13053 INTERGENIC
3R	18269520	3R_18269520_SNP [dm3] 3R_22443798_SNP [dm6]	C	T	3.343e^-4	0.919	NON_SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_sens
3R	24365077	3R_24365077_INS [dm3] 3R_28539355_INS [dm6]	C	CC	3.377e^-4	0.919	INTRON Ppn
X	19282266	X_19282266_INS [dm3] X_19388233_INS [dm6]	T	TACAATACT	3.379e^-4	0.919	INTRON kek5
3R	10902652	3R_10902652_SNP [dm3] 3R_15076930_SNP [dm6]	C	T	3.381e^-4	0.919	INTRON dpr9
X	17977178	X_17977178_SNP [dm3] X_18083145_SNP [dm6]	T	C	3.381e^-4	0.919	INTRON CG7536
2R	4120222	2R_4120222_SNP [dm3] 2R_8232717_SNP [dm6]	A	G	3.393e^-4	0.919	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12446867	2L_12446867_SNP [dm3] 2L_12446867_SNP [dm6]	T	A	3.411e^-4	0.919	NON_SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Ea
2L	9078300	2L_9078300_SNP [dm3] 2L_9078300_SNP [dm6]	C	A	3.429e^-4	0.919	DOWNSTREAM CG12439 INTERGENIC
3L	10496645	3L_10496645_SNP [dm3] 3L_10503545_SNP [dm6]	G	A	3.473e^-4	0.919	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17279522	2R_17279522_SNP [dm3] 2R_21392017_SNP [dm6]	A	T	3.483e^-4	0.919	DOWNSTREAM Sdc INTRON Acox57D-d
3R	16738847	3R_16738847_SNP [dm3] 3R_20913125_SNP [dm6]	G	T	3.486e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
3R	16725601	3R_16725601_SNP [dm3] 3R_20899879_SNP [dm6]	T	C	3.501e^-4	0.919	INTERGENIC
X	17955756	X_17955756_DEL [dm3] X_18061723_DEL [dm6]	CCCGC	C	3.502e^-4	0.919	INTRON Sh
3R	18358064	3R_18358064_SNP [dm3] 3R_22532342_SNP [dm6]	C	G	3.508e^-4	0.919	UTR_3_PRIME CG5326 UPSTREAM CG33093
X	17976655	X_17976655_SNP [dm3] X_18082622_SNP [dm6]	C	G	3.526e^-4	0.919	INTRON CG7536
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	3.527e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	3.527e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	3.527e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	3.527e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24372493	3R_24372493_INS [dm3] 3R_28546771_INS [dm6]	T	TGT	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372496	3R_24372496_INS [dm3] 3R_28546774_INS [dm6]	A	ATAACACAC	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372522	3R_24372522_SNP [dm3] 3R_28546800_SNP [dm6]	G	A	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372523	3R_24372523_INS [dm3] 3R_28546801_INS [dm6]	A	ATTGTAATT	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372528	3R_24372528_SNP [dm3] 3R_28546806_SNP [dm6]	C	A	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372529	3R_24372529_SNP [dm3] 3R_28546807_SNP [dm6]	T	A	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24372560	3R_24372560_SNP [dm3] 3R_28546838_SNP [dm6]	A	T	3.541e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9235285	2L_9235285_SNP [dm3] 2L_9235285_SNP [dm6]	G	A	3.556e^-4	0.919	INTRON tai	TF binding site mE1_TFBS_inv
3R	5062512	3R_5062512_INS [dm3] 3R_9236790_INS [dm6]	T	TT	3.563e^-4	0.919	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	7310344	2R_7310344_SNP [dm3] 2R_11422839_SNP [dm6]	A	T	3.563e^-4	0.919	INTRON Drip
2L	2989686	2L_2989686_SNP [dm3] 2L_2989686_SNP [dm6]	T	C	3.576e^-4	0.919	UTR_3_PRIME Bem46 & 1 other
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	3.582e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8609721	3L_8609721_SNP [dm3] 3L_8616621_SNP [dm6]	G	C	3.584e^-4	0.919	UTR_3_PRIME CG6282 UPSTREAM S-Lap1
3L	4801109	3L_4801109_SNP [dm3] 3L_4801109_SNP [dm6]	C	G	3.586e^-4	0.919	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
3R	24365036	3R_24365036_SNP [dm3] 3R_28539314_SNP [dm6]	A	G	3.588e^-4	0.919	INTRON Ppn
3L	18905762	3L_18905762_SNP [dm3] 3L_18912662_SNP [dm6]	A	C	3.596e^-4	0.919	DOWNSTREAM CG14077 INTRON CG14077
3L	15870162	3L_15870162_SNP [dm3] 3L_15877062_SNP [dm6]	T	G	3.596e^-4	0.919	UPSTREAM CR44051 INTRON pHCl
3R	24382543	3R_24382543_SNP [dm3] 3R_28556821_SNP [dm6]	C	A	3.600e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2663711	2L_2663711_SNP [dm3] 2L_2663711_SNP [dm6]	T	A	3.619e^-4	0.919	INTERGENIC
X	3536288	X_3536288_SNP [dm3] X_3642255_SNP [dm6]	T	G	3.623e^-4	0.919	INTRON AstA-R1
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	3.624e^-4	0.919	UTR_3_PRIME Syt1
X	16071933	X_16071933_SNP [dm3] X_16177900_SNP [dm6]	T	A	3.662e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
X	21215575	X_21215575_SNP [dm3] X_21344548_SNP [dm6]	T	G	3.667e^-4	0.919	UTR_3_PRIME fliI UPSTREAM dod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	17895880	2R_17895880_SNP [dm3] 2R_22008375_SNP [dm6]	G	T	3.667e^-4	0.919	INTRON CG34370
3L	15870867	3L_15870867_SNP [dm3] 3L_15877767_SNP [dm6]	A	G	3.675e^-4	0.919	INTRON pHCl
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	3.687e^-4	0.919	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8762996	2L_8762996_SNP [dm3] 2L_8762996_SNP [dm6]	T	C	3.695e^-4	0.919	INTERGENIC
3R	16400119	3R_16400119_SNP [dm3] 3R_20574397_SNP [dm6]	T	G	3.697e^-4	0.919	UPSTREAM snoRNA:Psi18S-301 DOWNSTREAM TFAM INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	3826514	3L_3826514_SNP [dm3] 3L_3826514_SNP [dm6]	G	C	3.710e^-4	0.919	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10902073	3R_10902073_SNP [dm3] 3R_15076351_SNP [dm6]	A	T	3.719e^-4	0.919	INTRON dpr9
3R	10902079	3R_10902079_DEL [dm3] 3R_15076357_DEL [dm6]	CC	C	3.719e^-4	0.919	INTRON dpr9
3R	10902084	3R_10902084_SNP [dm3] 3R_15076362_SNP [dm6]	T	C	3.719e^-4	0.919	INTRON dpr9
2L	7750313	2L_7750313_SNP [dm3] 2L_7750313_SNP [dm6]	T	C	3.736e^-4	0.919	INTERGENIC
3R	26967716	3R_26967716_SNP [dm3] 3R_31141994_SNP [dm6]	A	G	3.738e^-4	0.919	INTRON Gycbeta100B
3R	24362048	3R_24362048_SNP [dm3] 3R_28536326_SNP [dm6]	T	G	3.748e^-4	0.919	INTRON Ppn
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	3.750e^-4	0.919	INTRON CG30463
2L	9507221	2L_9507221_SNP [dm3] 2L_9507221_SNP [dm6]	G	C	3.751e^-4	0.919	INTRON CG33298
3R	24816235	3R_24816235_SNP [dm3] 3R_28990513_SNP [dm6]	T	C	3.755e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12872190	2L_12872190_SNP [dm3] 2L_12872190_SNP [dm6]	C	G	3.771e^-4	0.919	INTERGENIC
2R	8622400	2R_8622400_SNP [dm3] 2R_12734895_SNP [dm6]	A	T	3.773e^-4	0.919	INTRON CG42663
3R	24337473	3R_24337473_SNP [dm3] 3R_28511751_SNP [dm6]	C	T	3.773e^-4	0.919	SYNONYMOUS_CODING Dhc98D
3R	14552599	3R_14552599_SNP [dm3] 3R_18726877_SNP [dm6]	C	T	3.790e^-4	0.919	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
X	2705446	X_2705446_SNP [dm3] X_2811413_SNP [dm6]	G	A	3.822e^-4	0.919	DOWNSTREAM CG12498 INTRON kirre
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	3.834e^-4	0.919	INTRON Pxn
3R	19193082	3R_19193082_INS [dm3] 3R_23367360_INS [dm6]	A	AGTA	3.845e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6535808	X_6535808_SNP [dm3] X_6641775_SNP [dm6]	A	T	3.848e^-4	0.919	INTRON pigs
3R	27336509	3R_27336509_SNP [dm3] 3R_31510787_SNP [dm6]	A	C	3.863e^-4	0.919	INTERGENIC
2R	11707989	2R_11707989_SNP [dm3] 2R_15820484_SNP [dm6]	T	A	3.898e^-4	0.919	INTRON tun & 1 other
X	12968479	X_12968479_SNP [dm3] X_13074446_SNP [dm6]	A	G	3.931e^-4	0.919	SYNONYMOUS_CODING rad
X	12968495	X_12968495_SNP [dm3] X_13074462_SNP [dm6]	C	T	3.931e^-4	0.919	SYNONYMOUS_CODING rad
X	3020593	X_3020593_SNP [dm3] X_3126560_SNP [dm6]	A	G	3.936e^-4	0.919	INTRON kirre
2L	13441488	2L_13441488_SNP [dm3] 2L_13441488_SNP [dm6]	A	C	3.944e^-4	0.919	INTRON CG42784 EXON CR45683
3L	17335903	3L_17335903_SNP [dm3] 3L_17342803_SNP [dm6]	A	T	3.962e^-4	0.919	INTRON brv2
2L	4353700	2L_4353700_SNP [dm3] 2L_4353700_SNP [dm6]	A	G	3.976e^-4	0.919	NON_SYNONYMOUS_CODING CG15429	TF binding site BDTNP1_TFBS_prd
3L	7327193	3L_7327193_SNP [dm3] 3L_7334093_SNP [dm6]	T	G	3.979e^-4	0.919	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6907139	2L_6907139_SNP [dm3] 2L_6907139_SNP [dm6]	G	A	3.986e^-4	0.919	UPSTREAM Rat1 DOWNSTREAM Nlg2 INTRON CG13773
3R	24368427	3R_24368427_SNP [dm3] 3R_28542705_SNP [dm6]	G	T	3.989e^-4	0.919	NON_SYNONYMOUS_CODING CG12413
3R	24371178	3R_24371178_SNP [dm3] 3R_28545456_SNP [dm6]	T	C	3.989e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	8583224	2R_8583224_SNP [dm3] 2R_12695719_SNP [dm6]	C	A	3.996e^-4	0.919	INTERGENIC
3L	7325219	3L_7325219_SNP [dm3] 3L_7332119_SNP [dm6]	A	G	4.010e^-4	0.919	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	4.021e^-4	0.919	INTRON CG5756
3L	11402795	3L_11402795_SNP [dm3] 3L_11409695_SNP [dm6]	C	T	4.031e^-4	0.919	INTERGENIC
3L	11402833	3L_11402833_SNP [dm3] 3L_11409733_SNP [dm6]	C	T	4.031e^-4	0.919	INTERGENIC
X	18214043	X_18214043_DEL [dm3] X_18320010_DEL [dm6]	CC	C	4.037e^-4	0.919	INTRON CG6023
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	4.052e^-4	0.919	INTRON dpr8
X	14301507	X_14301507_SNP [dm3] X_14407474_SNP [dm6]	G	A	4.052e^-4	0.919	INTRON dpr8
3R	26932268	3R_26932268_SNP [dm3] 3R_31106546_SNP [dm6]	C	G	4.064e^-4	0.919	UTR_3_PRIME CG11318
3R	24370937	3R_24370937_SNP [dm3] 3R_28545215_SNP [dm6]	G	A	4.077e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	15646322	3L_15646322_SNP [dm3] 3L_15653222_SNP [dm6]	C	T	4.084e^-4	0.919	UPSTREAM Eig71Ec DOWNSTREAM Eig71Ed INTERGENIC
3L	15646324	3L_15646324_SNP [dm3] 3L_15653224_SNP [dm6]	A	T	4.084e^-4	0.919	UPSTREAM Eig71Ec DOWNSTREAM Eig71Ed INTERGENIC
3R	18704597	3R_18704597_SNP [dm3] 3R_22878875_SNP [dm6]	A	G	4.089e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6249182	2L_6249182_SNP [dm3] 2L_6249182_SNP [dm6]	G	A	4.090e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	13949278	3L_13949278_SNP [dm3] 3L_13956178_SNP [dm6]	A	C	4.102e^-4	0.919	INTRON CG32137
3R	26838751	3R_26838751_SNP [dm3] 3R_31013029_SNP [dm6]	C	A	4.108e^-4	0.919	INTRON 5-HT7	TF binding site mE1_TFBS_inv
2R	12583221	2R_12583221_SNP [dm3] 2R_16695716_SNP [dm6]	C	T	4.111e^-4	0.919	INTRON CG30463
3R	24370861	3R_24370861_SNP [dm3] 3R_28545139_SNP [dm6]	A	T	4.114e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	24370990	3R_24370990_SNP [dm3] 3R_28545268_SNP [dm6]	C	T	4.114e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	7367377	2R_7367377_SNP [dm3] 2R_11479872_SNP [dm6]	G	A	4.114e^-4	0.919	INTRON inv
2L	19797987	2L_19797987_SNP [dm3] 2L_19797987_SNP [dm6]	A	C	4.125e^-4	0.919	INTRON sick
3R	9479951	3R_9479951_DEL [dm3] 3R_13654229_DEL [dm6]	TT	T	4.145e^-4	0.919	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	26925817	3R_26925817_SNP [dm3] 3R_31100095_SNP [dm6]	T	C	4.170e^-4	0.919	NON_SYNONYMOUS_CODING CG15553
3R	26673229	3R_26673229_SNP [dm3] 3R_30847507_SNP [dm6]	C	G	4.177e^-4	0.919	INTERGENIC
3L	12970349	3L_12970349_SNP [dm3] 3L_12977249_SNP [dm6]	A	T	4.180e^-4	0.919	INTERGENIC
3L	3942492	3L_3942492_SNP [dm3] 3L_3942492_SNP [dm6]	G	A	4.186e^-4	0.919	UPSTREAM CG14982 & 1 other INTERGENIC
2R	8919176	2R_8919176_SNP [dm3] 2R_13031671_SNP [dm6]	C	T	4.189e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_sens
X	20316145	X_20316145_SNP [dm3] X_20445118_SNP [dm6]	G	T	4.216e^-4	0.919	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19388891	3L_19388891_SNP [dm3] 3L_19395791_SNP [dm6]	G	A	4.222e^-4	0.919	INTRON CG32206
3R	24263442	3R_24263442_SNP [dm3] 3R_28437720_SNP [dm6]	T	C	4.242e^-4	0.919	INTRON beat-VI
3R	26119143	3R_26119143_SNP [dm3] 3R_30293421_SNP [dm6]	A	G	4.255e^-4	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	7101775	2L_7101775_SNP [dm3] 2L_7101775_SNP [dm6]	C	T	4.295e^-4	0.919	INTRON Pvf3
X	18212422	X_18212422_SNP [dm3] X_18318389_SNP [dm6]	G	A	4.304e^-4	0.919	INTRON CG6023
3L	1323325	3L_1323325_SNP [dm3] 3L_1323325_SNP [dm6]	T	A	4.314e^-4	0.919	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA
2L	19776416	2L_19776416_SNP [dm3] 2L_19776416_SNP [dm6]	G	A	4.317e^-4	0.919	UTR_3_PRIME CdGAPr
2L	13928677	2L_13928677_SNP [dm3] 2L_13928677_SNP [dm6]	T	A	4.323e^-4	0.919	INTRON Ance-3
3R	10737232	3R_10737232_SNP [dm3] 3R_14911510_SNP [dm6]	A	T	4.326e^-4	0.919	INTERGENIC
2L	5456174	2L_5456174_SNP [dm3] 2L_5456174_SNP [dm6]	C	T	4.328e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13625980	3R_13625980_SNP [dm3] 3R_17800258_SNP [dm6]	A	G	4.333e^-4	0.919	NON_SYNONYMOUS_CODING CG17803
3R	24279547	3R_24279547_SNP [dm3] 3R_28453825_SNP [dm6]	A	G	4.335e^-4	0.919	INTRON beat-VI
2L	9507277	2L_9507277_SNP [dm3] 2L_9507277_SNP [dm6]	G	T	4.352e^-4	0.919	INTRON CG33298
3R	26066620	3R_26066620_SNP [dm3] 3R_30240898_SNP [dm6]	A	G	4.361e^-4	0.919	DOWNSTREAM CG9737 INTERGENIC
2R	15002211	2R_15002211_SNP [dm3] 2R_19114706_SNP [dm6]	C	T	4.368e^-4	0.919	INTRON 5-HT1A
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	4.375e^-4	0.919	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	20119346	2R_20119346_SNP [dm3] 2R_24231823_SNP [dm6]	T	C	4.378e^-4	0.919	INTERGENIC
2R	9348168	2R_9348168_SNP [dm3] 2R_13460663_SNP [dm6]	T	C	4.379e^-4	0.919	INTRON arr	TF binding site mE1_TFBS_chinmo
3R	24331273	3R_24331273_MNP [dm3] 3R_28505551_MNP [dm6]	AAA	CCG	4.389e^-4	0.919	INTRON Dhc98D
3R	24331279	3R_24331279_MNP [dm3] 3R_28505557_MNP [dm6]	TTT	GGC	4.389e^-4	0.919	INTRON Dhc98D
3R	18739671	3R_18739671_SNP [dm3] 3R_22913949_SNP [dm6]	C	A	4.390e^-4	0.919	INTRON klg
3R	13668573	3R_13668573_SNP [dm3] 3R_17842851_SNP [dm6]	G	C	4.393e^-4	0.919	INTRON tinc
X	7804462	X_7804462_INS [dm3] X_7910429_INS [dm6]	C	CTC	4.400e^-4	0.919	INTRON CG1444
3R	13961335	3R_13961335_INS [dm3] 3R_18135613_INS [dm6]	G	GA	4.408e^-4	0.919	DOWNSTREAM sr INTERGENIC
2L	5760055	2L_5760055_SNP [dm3] 2L_5760055_SNP [dm6]	A	C	4.414e^-4	0.919	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3R	4955712	3R_4955712_DEL [dm3] 3R_9129990_DEL [dm6]	AT	A	4.415e^-4	0.919	INTRON pum
X	11228756	X_11228756_SNP [dm3] X_11334723_SNP [dm6]	G	A	4.415e^-4	0.919	UTR_3_PRIME Kap3 DOWNSTREAM CG1657	TF binding site mE1_TFBS_cad
3R	17853263	3R_17853263_SNP [dm3] 3R_22027541_SNP [dm6]	C	A	4.425e^-4	0.919	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17826921	3R_17826921_SNP [dm3] 3R_22001199_SNP [dm6]	G	C	4.426e^-4	0.919	INTRON Eip93F	TF binding site mE1_TFBS_HSA
X	20285579	X_20285579_SNP [dm3] X_20414552_SNP [dm6]	A	T	4.436e^-4	0.919	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
X	20285580	X_20285580_SNP [dm3] X_20414553_SNP [dm6]	T	C	4.436e^-4	0.919	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	17316176	3L_17316176_SNP [dm3] 3L_17323076_SNP [dm6]	G	A	4.436e^-4	0.919	NON_SYNONYMOUS_CODING CG13724
3R	24220172	3R_24220172_SNP [dm3] 3R_28394450_SNP [dm6]	G	A	4.449e^-4	0.919	INTERGENIC
3R	16692311	3R_16692311_SNP [dm3] 3R_20866589_SNP [dm6]	T	G	4.458e^-4	0.919	UPSTREAM CG3822 INTERGENIC
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	4.472e^-4	0.919	INTERGENIC
3R	9479826	3R_9479826_SNP [dm3] 3R_13654104_SNP [dm6]	T	A	4.478e^-4	0.919	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	9479838	3R_9479838_SNP [dm3] 3R_13654116_SNP [dm6]	G	T	4.478e^-4	0.919	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	9479891	3R_9479891_SNP [dm3] 3R_13654169_SNP [dm6]	A	G	4.478e^-4	0.919	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	16738663	3R_16738663_DEL [dm3] 3R_20912941_DEL [dm6]	TC	T	4.487e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738690	3R_16738690_SNP [dm3] 3R_20912968_SNP [dm6]	G	T	4.487e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738726	3R_16738726_SNP [dm3] 3R_20913004_SNP [dm6]	C	A	4.487e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6189536	2R_6189536_INS [dm3] 2R_10302031_INS [dm6]	A	ATA	4.494e^-4	0.919	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	6189697	2R_6189697_SNP [dm3] 2R_10302192_SNP [dm6]	C	T	4.494e^-4	0.919	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	27206827	3R_27206827_SNP [dm3] 3R_31381105_SNP [dm6]	T	A	4.528e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	5322305	X_5322305_SNP [dm3] X_5428272_SNP [dm6]	C	T	4.535e^-4	0.919	UPSTREAM CR45517 DOWNSTREAM CG16756 INTERGENIC
X	5322331	X_5322331_SNP [dm3] X_5428298_SNP [dm6]	T	G	4.535e^-4	0.919	UPSTREAM CR45517 DOWNSTREAM CG16756 INTERGENIC
3R	26784297	3R_26784297_SNP [dm3] 3R_30958575_SNP [dm6]	T	C	4.539e^-4	0.919	INTERGENIC
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	4.551e^-4	0.919	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22901436	3R_22901436_INS [dm3] 3R_27075714_INS [dm6]	A	AAA	4.556e^-4	0.919	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26078723	3R_26078723_SNP [dm3] 3R_30253001_SNP [dm6]	C	T	4.560e^-4	0.919	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	4.562e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5297393	3R_5297393_SNP [dm3] 3R_9471671_SNP [dm6]	C	T	4.568e^-4	0.919	SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_chinmo
2L	3045159	2L_3045159_SNP [dm3] 2L_3045159_SNP [dm6]	G	T	4.584e^-4	0.919	INTRON v_2_k05816
X	20318455	X_20318455_INS [dm3] X_20447428_INS [dm6]	C	CGGTGCAACGGGCATGGTC...	4.585e^-4	0.919	DOWNSTREAM CG42578 INTERGENIC
X	20318466	X_20318466_SNP [dm3] X_20447439_SNP [dm6]	A	G	4.585e^-4	0.919	DOWNSTREAM CG42578 INTERGENIC
X	20318467	X_20318467_SNP [dm3] X_20447440_SNP [dm6]	G	T	4.585e^-4	0.919	DOWNSTREAM CG42578 INTERGENIC
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	4.616e^-4	0.919	INTRON CG6123
X	3536341	X_3536341_SNP [dm3] X_3642308_SNP [dm6]	T	A	4.620e^-4	0.919	INTRON AstA-R1
2R	20207887	2R_20207887_SNP [dm3] 2R_24320364_SNP [dm6]	C	T	4.635e^-4	0.919	INTERGENIC
3L	16161390	3L_16161390_SNP [dm3] 3L_16168290_SNP [dm6]	T	A	4.638e^-4	0.919	INTERGENIC
2L	5476379	2L_5476379_SNP [dm3] 2L_5476379_SNP [dm6]	C	T	4.643e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12584261	2R_12584261_SNP [dm3] 2R_16696756_SNP [dm6]	C	T	4.648e^-4	0.919	INTRON CG30463
3L	10718741	3L_10718741_DEL [dm3] 3L_10725641_DEL [dm6]	TT	T	4.654e^-4	0.919	INTERGENIC
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	4.660e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26936510	3R_26936510_SNP [dm3] 3R_31110788_SNP [dm6]	G	A	4.667e^-4	0.919	INTERGENIC
2R	12585274	2R_12585274_SNP [dm3] 2R_16697769_SNP [dm6]	G	A	4.671e^-4	0.919	INTRON CG30463
3R	18383996	3R_18383996_SNP [dm3] 3R_22558274_SNP [dm6]	A	T	4.674e^-4	0.919	DOWNSTREAM CG5278 INTERGENIC
3L	15469574	3L_15469574_SNP [dm3] 3L_15476474_SNP [dm6]	T	A	4.677e^-4	0.919	INTERGENIC
3R	4213127	3R_4213127_SNP [dm3] 3R_8387405_SNP [dm6]	C	T	4.681e^-4	0.919	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4640210	2L_4640210_SNP [dm3] 2L_4640210_SNP [dm6]	C	T	4.698e^-4	0.919	INTERGENIC
3R	9578273	3R_9578273_SNP [dm3] 3R_13752551_SNP [dm6]	G	A	4.710e^-4	0.919	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_sens
3R	24372363	3R_24372363_SNP [dm3] 3R_28546641_SNP [dm6]	C	A	4.726e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16166696	3L_16166696_SNP [dm3] 3L_16173596_SNP [dm6]	G	T	4.736e^-4	0.919	INTERGENIC
3R	26974822	3R_26974822_SNP [dm3] 3R_31149100_SNP [dm6]	A	T	4.738e^-4	0.919	INTRON Gycbeta100B
X	18391766	X_18391766_SNP [dm3] X_18497733_SNP [dm6]	G	T	4.740e^-4	0.919	INTRON GalNAc-T2
2L	3628428	2L_3628428_SNP [dm3] 2L_3628428_SNP [dm6]	G	T	4.740e^-4	0.919	INTRON for	TF binding site BDTNP1_TFBS_twi
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	4.743e^-4	0.919	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14340716	2L_14340716_SNP [dm3] 2L_14340716_SNP [dm6]	A	G	4.750e^-4	0.919	DOWNSTREAM CG15286 INTRON CG33090
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	4.769e^-4	0.919	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	4.787e^-4	0.919	INTRON sick
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	4.787e^-4	0.919	INTRON sick
2L	2862494	2L_2862494_SNP [dm3] 2L_2862494_SNP [dm6]	A	G	4.822e^-4	0.919	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6539469	2R_6539469_SNP [dm3] 2R_10651964_SNP [dm6]	G	T	4.851e^-4	0.919	INTERGENIC
3R	16738642	3R_16738642_INS [dm3] 3R_20912920_INS [dm6]	A	AA	4.854e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18607949	2R_18607949_SNP [dm3] 2R_22720444_SNP [dm6]	A	G	4.862e^-4	0.919	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19822533	2L_19822533_DEL [dm3] 2L_19822533_DEL [dm6]	CC	C	4.876e^-4	0.919	INTRON sick
2L	910099	2L_910099_SNP [dm3] 2L_910099_SNP [dm6]	A	G	4.881e^-4	0.919	INTERGENIC
3L	13196496	3L_13196496_SNP [dm3] 3L_13203396_SNP [dm6]	G	A	4.881e^-4	0.919	INTERGENIC
X	15519252	X_15519252_INS [dm3] X_15625219_INS [dm6]	A	AGTATTAGTT	4.888e^-4	0.919	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10268484	3L_10268484_SNP [dm3] 3L_10275384_SNP [dm6]	A	T	4.909e^-4	0.919	DOWNSTREAM Or67d INTERGENIC
X	4747172	X_4747172_DEL [dm3] X_4853139_DEL [dm6]	AGA	A	4.909e^-4	0.919	INTRON CG42594	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	4.933e^-4	0.919	INTRON CG42613
3L	7766195	3L_7766195_SNP [dm3] 3L_7773095_SNP [dm6]	A	G	4.947e^-4	0.919	INTRON Clk	regulatory region REDfly_CRMs
3L	4341073	3L_4341073_SNP [dm3] 3L_4341073_SNP [dm6]	A	G	4.948e^-4	0.919	INTRON Cip4
3R	26021142	3R_26021142_SNP [dm3] 3R_30195420_SNP [dm6]	A	G	4.953e^-4	0.919	DOWNSTREAM CG9743 INTRON CG15531
3R	27335732	3R_27335732_DEL [dm3] 3R_31510010_DEL [dm6]	AGTCCCCAGATGGAA...	A	4.971e^-4	0.919	INTERGENIC
3L	13838546	3L_13838546_SNP [dm3] 3L_13845446_SNP [dm6]	C	T	4.972e^-4	0.919	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	13838766	3L_13838766_SNP [dm3] 3L_13845666_SNP [dm6]	T	G	4.972e^-4	0.919	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	4.972e^-4	0.919	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	6505360	X_6505360_SNP [dm3] X_6611327_SNP [dm6]	A	G	4.980e^-4	0.919	INTRON pigs
3R	12642564	3R_12642564_SNP [dm3] 3R_16816842_SNP [dm6]	C	T	4.985e^-4	0.919	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3L	15870106	3L_15870106_SNP [dm3] 3L_15877006_SNP [dm6]	T	A	4.990e^-4	0.919	UPSTREAM CR44051 INTRON pHCl
3R	11619418	3R_11619418_SNP [dm3] 3R_15793696_SNP [dm6]	C	T	4.997e^-4	0.919	UPSTREAM nsl1 DOWNSTREAM Acyp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	25344655	3R_25344655_SNP [dm3] 3R_29518933_SNP [dm6]	C	A	5.020e^-4	0.919	INTERGENIC
X	5466072	X_5466072_SNP [dm3] X_5572039_SNP [dm6]	A	T	5.039e^-4	0.919	INTERGENIC
X	5466081	X_5466081_SNP [dm3] X_5572048_SNP [dm6]	G	T	5.039e^-4	0.919	INTERGENIC
2R	15928199	2R_15928199_SNP [dm3] 2R_20040694_SNP [dm6]	T	C	5.043e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	11232602	X_11232602_SNP [dm3] X_11338569_SNP [dm6]	C	T	5.049e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
X	11232627	X_11232627_SNP [dm3] X_11338594_SNP [dm6]	A	C	5.049e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
X	11232628	X_11232628_SNP [dm3] X_11338595_SNP [dm6]	T	C	5.049e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3R	26837700	3R_26837700_SNP [dm3] 3R_31011978_SNP [dm6]	T	C	5.050e^-4	0.919	INTRON 5-HT7
X	2705403	X_2705403_SNP [dm3] X_2811370_SNP [dm6]	A	G	5.052e^-4	0.919	DOWNSTREAM CG12498 INTRON kirre
2R	15566572	2R_15566572_SNP [dm3] 2R_19679067_SNP [dm6]	G	T	5.053e^-4	0.919	INTERGENIC
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	5.054e^-4	0.919	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	13505254	2R_13505254_SNP [dm3] 2R_17617749_SNP [dm6]	G	C	5.063e^-4	0.919	UTR_5_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936
2R	11520603	2R_11520603_SNP [dm3] 2R_15633098_SNP [dm6]	C	G	5.067e^-4	0.919	INTRON CG42524
3R	13666771	3R_13666771_SNP [dm3] 3R_17841049_SNP [dm6]	A	G	5.074e^-4	0.919	INTRON tinc
3L	1112505	3L_1112505_DEL [dm3] 3L_1112505_DEL [dm6]	CTAAA	C	5.087e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10862630	3L_10862630_SNP [dm3] 3L_10869530_SNP [dm6]	A	T	5.133e^-4	0.919	UPSTREAM tna INTRON tna
3R	7846401	3R_7846401_SNP [dm3] 3R_12020679_SNP [dm6]	T	C	5.140e^-4	0.919	INTERGENIC
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	5.161e^-4	0.919	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14557616	2R_14557616_SNP [dm3] 2R_18670111_SNP [dm6]	C	T	5.163e^-4	0.919	INTRON edl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	15469855	3L_15469855_SNP [dm3] 3L_15476755_SNP [dm6]	T	A	5.165e^-4	0.919	INTERGENIC
2R	6393440	2R_6393440_SNP [dm3] 2R_10505935_SNP [dm6]	G	A	5.173e^-4	0.919	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	5.202e^-4	0.919	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	5.202e^-4	0.919	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	5.202e^-4	0.919	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	5.202e^-4	0.919	INTERGENIC
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	5.239e^-4	0.919	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3R	23550954	3R_23550954_SNP [dm3] 3R_27725232_SNP [dm6]	A	C	5.245e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19935159	2L_19935159_SNP [dm3] 2L_19935159_SNP [dm6]	C	A	5.251e^-4	0.919	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7266950	3L_7266950_SNP [dm3] 3L_7273850_SNP [dm6]	T	G	5.275e^-4	0.919	INTRON unc-13-4A
2R	9893528	2R_9893528_SNP [dm3] 2R_14006023_SNP [dm6]	C	A	5.276e^-4	0.919	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4130369	3L_4130369_SNP [dm3] 3L_4130369_SNP [dm6]	T	A	5.285e^-4	0.919	INTRON ens
2R	10318677	2R_10318677_SNP [dm3] 2R_14431172_SNP [dm6]	A	G	5.288e^-4	0.919	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16739142	3R_16739142_SNP [dm3] 3R_20913420_SNP [dm6]	C	T	5.297e^-4	0.919	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24370486	3R_24370486_SNP [dm3] 3R_28544764_SNP [dm6]	T	C	5.304e^-4	0.919	START_GAINED CG12413 UTR_5_PRIME CG12413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24370989	3R_24370989_SNP [dm3] 3R_28545267_SNP [dm6]	A	G	5.304e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	24371057	3R_24371057_SNP [dm3] 3R_28545335_SNP [dm6]	T	A	5.304e^-4	0.919	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	12644778	3R_12644778_SNP [dm3] 3R_16819056_SNP [dm6]	G	A	5.306e^-4	0.919	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3216078	2L_3216078_SNP [dm3] 2L_3216078_SNP [dm6]	A	T	5.307e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20270266	2L_20270266_SNP [dm3] 2L_20270266_SNP [dm6]	A	T	5.346e^-4	0.919	INTERGENIC
3R	7859646	3R_7859646_SNP [dm3] 3R_12033924_SNP [dm6]	G	A	5.350e^-4	0.919	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16534721	2L_16534721_SNP [dm3] 2L_16534721_SNP [dm6]	T	C	5.353e^-4	0.919	UPSTREAM CR45354 DOWNSTREAM CR45355 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1112794	3L_1112794_SNP [dm3] 3L_1112794_SNP [dm6]	T	G	5.384e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6760432	2L_6760432_SNP [dm3] 2L_6760432_SNP [dm6]	A	G	5.403e^-4	0.919	UPSTREAM CG11322 INTRON CG11321
2L	19825441	2L_19825441_SNP [dm3] 2L_19825441_SNP [dm6]	C	T	5.410e^-4	0.919	INTRON sick
3R	16704589	3R_16704589_SNP [dm3] 3R_20878867_SNP [dm6]	C	T	5.414e^-4	0.919	DOWNSTREAM TotZ EXON CR44048
2L	5760074	2L_5760074_SNP [dm3] 2L_5760074_SNP [dm6]	T	A	5.421e^-4	0.919	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3L	4801154	3L_4801154_SNP [dm3] 3L_4801154_SNP [dm6]	C	A	5.430e^-4	0.919	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
X	7362800	X_7362800_SNP [dm3] X_7468767_SNP [dm6]	A	G	5.434e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1642205	3L_1642205_SNP [dm3] 3L_1642205_SNP [dm6]	C	T	5.442e^-4	0.919	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12899555	3L_12899555_SNP [dm3] 3L_12906455_SNP [dm6]	G	C	5.444e^-4	0.919	INTERGENIC
3L	1439006	3L_1439006_SNP [dm3] 3L_1439006_SNP [dm6]	C	G	5.444e^-4	0.919	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	1083669	2L_1083669_SNP [dm3] 2L_1083669_SNP [dm6]	A	G	5.449e^-4	0.919	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
3R	12547704	3R_12547704_SNP [dm3] 3R_16721982_SNP [dm6]	A	G	5.470e^-4	0.919	INTRON Ubx	TF binding site BDTNP1_TFBS_da
3L	16050309	3L_16050309_SNP [dm3] 3L_16057209_SNP [dm6]	G	T	5.470e^-4	0.919	INTRON Mbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14382586	X_14382586_SNP [dm3] X_14488553_SNP [dm6]	G	A	5.478e^-4	0.919	INTERGENIC
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	5.501e^-4	0.919	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9454074	2R_9454074_SNP [dm3] 2R_13566569_SNP [dm6]	G	A	5.504e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	2425777	2R_2425777_SNP [dm3] 2R_6538272_SNP [dm6]	A	G	5.504e^-4	0.919	INTRON jing
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	5.504e^-4	0.919	INTRON jing
3R	7307312	3R_7307312_SNP [dm3] 3R_11481590_SNP [dm6]	C	T	5.513e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9375176	3R_9375176_SNP [dm3] 3R_13549454_SNP [dm6]	A	C	5.518e^-4	0.919	INTERGENIC
3R	19381435	3R_19381435_SNP [dm3] 3R_23555713_SNP [dm6]	T	G	5.518e^-4	0.919	NON_SYNONYMOUS_CODING CG10164
3R	24279726	3R_24279726_SNP [dm3] 3R_28454004_SNP [dm6]	T	C	5.531e^-4	0.919	INTRON beat-VI
X	2414040	X_2414040_SNP [dm3] X_2520007_SNP [dm6]	C	T	5.535e^-4	0.919	INTRON trol
2L	14574320	2L_14574320_SNP [dm3] 2L_14574320_SNP [dm6]	G	T	5.537e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19824797	2L_19824797_SNP [dm3] 2L_19824797_SNP [dm6]	C	T	5.540e^-4	0.919	INTRON sick
X	8739234	X_8739234_DEL [dm3] X_8845201_DEL [dm6]	AA	A	5.541e^-4	0.919	INTRON CG12075
3L	8151147	3L_8151147_SNP [dm3] 3L_8158047_SNP [dm6]	T	C	5.543e^-4	0.919	INTRON CG42445
2R	7310421	2R_7310421_SNP [dm3] 2R_11422916_SNP [dm6]	C	T	5.546e^-4	0.919	INTRON Drip
3R	18852959	3R_18852959_INS [dm3] 3R_23027237_INS [dm6]	A	AATAAA	5.549e^-4	0.919	UPSTREAM lmd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24372586	3R_24372586_SNP [dm3] 3R_28546864_SNP [dm6]	T	C	5.567e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24331261	3R_24331261_DEL [dm3] 3R_28505539_DEL [dm6]	TATGAATATGT...	T	5.569e^-4	0.919	INTRON Dhc98D
3R	26051644	3R_26051644_SNP [dm3] 3R_30225922_SNP [dm6]	T	A	5.588e^-4	0.919	INTERGENIC
3R	16738833	3R_16738833_SNP [dm3] 3R_20913111_SNP [dm6]	T	A	5.623e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	5.626e^-4	0.919	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6907095	2L_6907095_SNP [dm3] 2L_6907095_SNP [dm6]	C	T	5.644e^-4	0.919	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
2L	8010179	2L_8010179_SNP [dm3] 2L_8010179_SNP [dm6]	A	T	5.661e^-4	0.919	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	5.662e^-4	0.919	NON_SYNONYMOUS_CODING tinc
3R	13386183	3R_13386183_SNP [dm3] 3R_17560461_SNP [dm6]	C	A	5.667e^-4	0.919	INTRON Hmx	TF binding site BDTNP1_TFBS_dl
3R	5779924	3R_5779924_SNP [dm3] 3R_9954202_SNP [dm6]	G	T	5.674e^-4	0.919	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
2R	20116006	2R_20116006_SNP [dm3] 2R_24228483_SNP [dm6]	C	A	5.674e^-4	0.919	INTRON CG30419
3L	869599	3L_869599_SNP [dm3] 3L_869599_SNP [dm6]	G	A	5.674e^-4	0.919	SPLICE_SITE_REGION CG12502 SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	869920	3L_869920_SNP [dm3] 3L_869920_SNP [dm6]	G	A	5.674e^-4	0.919	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	5.676e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7837668	3L_7837668_SNP [dm3] 3L_7844568_SNP [dm6]	T	C	5.677e^-4	0.919	INTRON Pdp1	regulatory region REDfly_CRMs
3R	25161482	3R_25161482_SNP [dm3] 3R_29335760_SNP [dm6]	C	T	5.694e^-4	0.919	INTERGENIC
2L	6027776	2L_6027776_SNP [dm3] 2L_6027776_SNP [dm6]	T	C	5.698e^-4	0.919	INTRON CG9109
3R	14430635	3R_14430635_SNP [dm3] 3R_18604913_SNP [dm6]	T	A	5.698e^-4	0.919	INTRON qin & 1 other
3L	9088633	3L_9088633_SNP [dm3] 3L_9095533_SNP [dm6]	A	T	5.702e^-4	0.919	DOWNSTREAM CG32032 INTERGENIC
X	18214458	X_18214458_DEL [dm3] X_18320425_DEL [dm6]	ATT	A	5.713e^-4	0.919	INTRON CG6023
2L	3858221	2L_3858221_SNP [dm3] 2L_3858221_SNP [dm6]	C	G	5.715e^-4	0.919	INTERGENIC
X	18652103	X_18652103_SNP [dm3] X_18758070_SNP [dm6]	T	C	5.725e^-4	0.919	INTERGENIC
3L	3285638	3L_3285638_SNP [dm3] 3L_3285638_SNP [dm6]	T	G	5.740e^-4	0.919	INTRON CG12017
2L	9723608	2L_9723608_SNP [dm3] 2L_9723608_SNP [dm6]	T	G	5.756e^-4	0.919	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14367958	2L_14367958_SNP [dm3] 2L_14367958_SNP [dm6]	G	T	5.759e^-4	0.919	INTERGENIC
3L	10268468	3L_10268468_SNP [dm3] 3L_10275368_SNP [dm6]	C	A	5.763e^-4	0.919	DOWNSTREAM Or67d INTERGENIC
2R	13414505	2R_13414505_SNP [dm3] 2R_17527000_SNP [dm6]	G	T	5.764e^-4	0.919	INTRON Patronin
2R	7395548	2R_7395548_INS [dm3] 2R_11508043_INS [dm6]	A	TT	5.775e^-4	0.919	UTR_3_PRIME inv DOWNSTREAM inv
3R	25190693	3R_25190693_SNP [dm3] 3R_29364971_SNP [dm6]	A	G	5.790e^-4	0.919	INTERGENIC
3R	26047388	3R_26047388_SNP [dm3] 3R_30221666_SNP [dm6]	A	C	5.798e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14382647	X_14382647_SNP [dm3] X_14488614_SNP [dm6]	T	C	5.799e^-4	0.919	INTERGENIC
X	14382649	X_14382649_SNP [dm3] X_14488616_SNP [dm6]	T	A	5.799e^-4	0.919	INTERGENIC
X	14382651	X_14382651_SNP [dm3] X_14488618_SNP [dm6]	C	T	5.799e^-4	0.919	INTERGENIC
3L	10262364	3L_10262364_SNP [dm3] 3L_10269264_SNP [dm6]	A	C	5.811e^-4	0.919	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	12842065	3L_12842065_SNP [dm3] 3L_12848965_SNP [dm6]	A	C	5.820e^-4	0.919	SYNONYMOUS_CODING CG10948	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2648465	2L_2648465_SNP [dm3] 2L_2648465_SNP [dm6]	T	C	5.821e^-4	0.919	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
3R	24262732	3R_24262732_SNP [dm3] 3R_28437010_SNP [dm6]	A	G	5.835e^-4	0.919	INTRON beat-VI
2R	11520590	2R_11520590_SNP [dm3] 2R_15633085_SNP [dm6]	C	T	5.852e^-4	0.919	INTRON CG42524
3R	24706428	3R_24706428_SNP [dm3] 3R_28880706_SNP [dm6]	G	A	5.875e^-4	0.919	UPSTREAM CG14527 & 1 other INTRON CG33203
3L	8163892	3L_8163892_SNP [dm3] 3L_8170792_SNP [dm6]	T	C	5.905e^-4	0.919	UTR_3_PRIME RecQ4
2R	4557203	2R_4557203_SNP [dm3] 2R_8669698_SNP [dm6]	T	A	5.907e^-4	0.919	INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15099419	2L_15099419_SNP [dm3] 2L_15099419_SNP [dm6]	A	G	5.932e^-4	0.919	INTERGENIC
2R	9348276	2R_9348276_SNP [dm3] 2R_13460771_SNP [dm6]	T	G	5.972e^-4	0.919	INTRON arr	TF binding site mE1_TFBS_chinmo
3L	20148940	3L_20148940_SNP [dm3] 3L_20155840_SNP [dm6]	A	G	5.974e^-4	0.919	INTRON CG42674
2R	18943090	2R_18943090_SNP [dm3] 2R_23055567_SNP [dm6]	C	T	5.982e^-4	0.919	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
2L	13915097	2L_13915097_SNP [dm3] 2L_13915097_SNP [dm6]	G	T	5.990e^-4	0.919	SYNONYMOUS_CODING Ance-3
2R	5318957	2R_5318957_SNP [dm3] 2R_9431452_SNP [dm6]	T	A	6.010e^-4	0.919	INTRON Pdk
2R	7728131	2R_7728131_INS [dm3] 2R_11840626_INS [dm6]	T	TG	6.028e^-4	0.919	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	7136782	X_7136782_SNP [dm3] X_7242749_SNP [dm6]	C	A	6.041e^-4	0.919	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6530649	2L_6530649_SNP [dm3] 2L_6530649_SNP [dm6]	G	T	6.065e^-4	0.919	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
3R	26671962	3R_26671962_SNP [dm3] 3R_30846240_SNP [dm6]	T	A	6.087e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4334529	3R_4334529_SNP [dm3] 3R_8508807_SNP [dm6]	G	A	6.096e^-4	0.919	INTERGENIC
3L	16433763	3L_16433763_SNP [dm3] 3L_16440663_SNP [dm6]	G	A	6.106e^-4	0.919	INTRON CG33158 & 1 other
3R	16692295	3R_16692295_SNP [dm3] 3R_20866573_SNP [dm6]	A	C	6.131e^-4	0.919	UPSTREAM CG3822 INTERGENIC
3L	16675000	3L_16675000_INS [dm3] 3L_16681900_INS [dm6]	A	AAA	6.181e^-4	0.919	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
3L	16470628	3L_16470628_SNP [dm3] 3L_16477528_SNP [dm6]	T	C	6.203e^-4	0.919	INTRON CG33158 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9449524	X_9449524_SNP [dm3] X_9555491_SNP [dm6]	T	C	6.219e^-4	0.919	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5404606	3L_5404606_SNP [dm3] 3L_5411506_SNP [dm6]	T	C	6.231e^-4	0.919	INTERGENIC
3R	24337686	3R_24337686_SNP [dm3] 3R_28511964_SNP [dm6]	A	C	6.247e^-4	0.919	SYNONYMOUS_CODING Dhc98D
3R	18633002	3R_18633002_SNP [dm3] 3R_22807280_SNP [dm6]	T	A	6.253e^-4	0.919	UTR_3_PRIME CG7031 DOWNSTREAM CG7031	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7837717	3L_7837717_SNP [dm3] 3L_7844617_SNP [dm6]	A	G	6.259e^-4	0.919	INTRON Pdp1	regulatory region REDfly_CRMs
2L	10247933	2L_10247933_SNP [dm3] 2L_10247933_SNP [dm6]	A	G	6.262e^-4	0.919	SYNONYMOUS_CODING bsk UPSTREAM chico
3R	26047386	3R_26047386_SNP [dm3] 3R_30221664_SNP [dm6]	G	A	6.270e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15493031	3L_15493031_SNP [dm3] 3L_15499931_SNP [dm6]	C	T	6.293e^-4	0.919	INTRON CG7275	TF binding site mE1_TFBS_sens
2L	15114292	2L_15114292_SNP [dm3] 2L_15114292_SNP [dm6]	C	T	6.301e^-4	0.919	SPLICE_SITE_REGION stc INTRON stc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16738916	3R_16738916_SNP [dm3] 3R_20913194_SNP [dm6]	A	T	6.303e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13194740	X_13194740_SNP [dm3] X_13300707_SNP [dm6]	T	C	6.307e^-4	0.919	DOWNSTREAM CG1622 INTRON CG1764
3R	24703570	3R_24703570_SNP [dm3] 3R_28877848_SNP [dm6]	A	G	6.323e^-4	0.919	DOWNSTREAM CG14523 & 1 other INTRON CG33203	TF binding site mE1_TFBS_chinmo
2L	2135963	2L_2135963_SNP [dm3] 2L_2135963_SNP [dm6]	T	C	6.327e^-4	0.919	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2135972	2L_2135972_SNP [dm3] 2L_2135972_SNP [dm6]	A	G	6.327e^-4	0.919	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25327057	3R_25327057_SNP [dm3] 3R_29501335_SNP [dm6]	G	A	6.328e^-4	0.919	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
2R	11874856	2R_11874856_SNP [dm3] 2R_15987351_SNP [dm6]	T	C	6.333e^-4	0.919	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
3R	7310106	3R_7310106_SNP [dm3] 3R_11484384_SNP [dm6]	C	G	6.335e^-4	0.919	INTERGENIC
2L	3216077	2L_3216077_SNP [dm3] 2L_3216077_SNP [dm6]	A	G	6.361e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16548275	3L_16548275_SNP [dm3] 3L_16555175_SNP [dm6]	T	A	6.366e^-4	0.919	INTERGENIC
3R	26096371	3R_26096371_SNP [dm3] 3R_30270649_SNP [dm6]	A	G	6.376e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	9197243	3R_9197243_SNP [dm3] 3R_13371521_SNP [dm6]	T	G	6.389e^-4	0.919	INTRON Lip3
3R	25115370	3R_25115370_SNP [dm3] 3R_29289648_SNP [dm6]	C	T	6.396e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17862217	X_17862217_INS [dm3] X_17968184_INS [dm6]	T	TTA	6.397e^-4	0.919	UPSTREAM Sh INTRON Sh
X	17862223	X_17862223_SNP [dm3] X_17968190_SNP [dm6]	A	T	6.397e^-4	0.919	UPSTREAM Sh INTRON Sh
X	17862224	X_17862224_SNP [dm3] X_17968191_SNP [dm6]	G	A	6.397e^-4	0.919	UPSTREAM Sh INTRON Sh
3R	19645124	3R_19645124_SNP [dm3] 3R_23819402_SNP [dm6]	C	T	6.427e^-4	0.919	UPSTREAM eIF4G2 & 1 other INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	16469930	3L_16469930_SNP [dm3] 3L_16476830_SNP [dm6]	C	T	6.429e^-4	0.919	INTRON CG33158 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26936492	3R_26936492_SNP [dm3] 3R_31110770_SNP [dm6]	A	T	6.432e^-4	0.919	INTERGENIC
3R	16738716	3R_16738716_SNP [dm3] 3R_20912994_SNP [dm6]	C	G	6.434e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18214470	X_18214470_SNP [dm3] X_18320437_SNP [dm6]	C	G	6.465e^-4	0.919	INTRON CG6023
X	18214502	X_18214502_DEL [dm3] X_18320469_DEL [dm6]	CATTGTCAAACCG...	C	6.465e^-4	0.919	INTRON CG6023
X	18214518	X_18214518_SNP [dm3] X_18320485_SNP [dm6]	T	C	6.465e^-4	0.919	INTRON CG6023
X	19762240	X_19762240_INS [dm3] X_19868207_INS [dm6]	A	TT	6.471e^-4	0.919	INTRON Hers
3R	25417408	3R_25417408_SNP [dm3] 3R_29591686_SNP [dm6]	G	A	6.473e^-4	0.919	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	25417428	3R_25417428_SNP [dm3] 3R_29591706_SNP [dm6]	C	T	6.473e^-4	0.919	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	19644692	3R_19644692_SNP [dm3] 3R_23818970_SNP [dm6]	C	T	6.481e^-4	0.919	UPSTREAM eIF4G2 & 1 other INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	6.485e^-4	0.919	INTRON CG33144
2R	12053572	2R_12053572_SNP [dm3] 2R_16166067_SNP [dm6]	C	T	6.487e^-4	0.919	SYNONYMOUS_CODING lbk
2R	19091705	2R_19091705_SNP [dm3] 2R_23204182_SNP [dm6]	G	A	6.499e^-4	0.919	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18943171	2R_18943171_SNP [dm3] 2R_23055648_SNP [dm6]	C	A	6.501e^-4	0.919	UTR_5_PRIME CG44252 INTRON CG44252
3L	16161651	3L_16161651_SNP [dm3] 3L_16168551_SNP [dm6]	T	C	6.513e^-4	0.919	DOWNSTREAM CG33796 INTERGENIC
3L	1932773	3L_1932773_SNP [dm3] 3L_1932773_SNP [dm6]	T	C	6.534e^-4	0.919	SYNONYMOUS_CODING Dbx DOWNSTREAM CG5687	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19823150	2L_19823150_SNP [dm3] 2L_19823150_SNP [dm6]	T	G	6.541e^-4	0.919	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11825129	X_11825129_SNP [dm3] X_11931096_SNP [dm6]	A	G	6.546e^-4	0.919	UPSTREAM CG10362 DOWNSTREAM cac INTERGENIC
2R	17102265	2R_17102265_INS [dm3] 2R_21214760_INS [dm6]	A	ACTGTGA	6.554e^-4	0.919	DOWNSTREAM CG15661 INTRON CG4302
2L	1101356	2L_1101356_MNP [dm3] 2L_1101356_MNP [dm6]	ACT	GTA	6.556e^-4	0.919	INTRON CG4629
2L	1101369	2L_1101369_SNP [dm3] 2L_1101369_SNP [dm6]	T	A	6.556e^-4	0.919	INTRON CG4629
X	11825872	X_11825872_SNP [dm3] X_11931839_SNP [dm6]	T	A	6.566e^-4	0.919	UTR_3_PRIME cac UPSTREAM CG10362 DOWNSTREAM cac
X	11829253	X_11829253_SNP [dm3] X_11935220_SNP [dm6]	C	T	6.580e^-4	0.919	UTR_3_PRIME cac
3R	12645208	3R_12645208_INS [dm3] 3R_16819486_INS [dm6]	C	CTCACTCACACTCCCC...	6.586e^-4	0.919	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6619612	X_6619612_SNP [dm3] X_6725579_SNP [dm6]	C	G	6.594e^-4	0.919	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	24362646	3R_24362646_INS [dm3] 3R_28536924_INS [dm6]	C	CGGTTGCC	6.597e^-4	0.919	INTRON Ppn
2L	8048392	2L_8048392_SNP [dm3] 2L_8048392_SNP [dm6]	T	C	6.597e^-4	0.919	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8048518	2L_8048518_SNP [dm3] 2L_8048518_SNP [dm6]	G	A	6.597e^-4	0.919	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	8048524	2L_8048524_SNP [dm3] 2L_8048524_SNP [dm6]	C	T	6.597e^-4	0.919	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	13191870	2R_13191870_SNP [dm3] 2R_17304365_SNP [dm6]	G	T	6.597e^-4	0.919	INTRON mbl
2R	6353918	2R_6353918_SNP [dm3] 2R_10466413_SNP [dm6]	C	G	6.597e^-4	0.919	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7206367	2R_7206367_SNP [dm3] 2R_11318862_SNP [dm6]	A	G	6.597e^-4	0.919	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	6.597e^-4	0.919	EXON CR45276	TF binding site mE1_TFBS_cad
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	6.597e^-4	0.919	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1061298	3L_1061298_SNP [dm3] 3L_1061298_SNP [dm6]	T	G	6.597e^-4	0.919	INTRON bab1
3L	10920333	3L_10920333_SNP [dm3] 3L_10927233_SNP [dm6]	C	G	6.597e^-4	0.919	INTERGENIC
X	11652062	X_11652062_SNP [dm3] X_11758029_SNP [dm6]	T	A	6.597e^-4	0.919	INTRON m
X	11652067	X_11652067_SNP [dm3] X_11758034_SNP [dm6]	G	C	6.597e^-4	0.919	INTRON m
X	15513106	X_15513106_SNP [dm3] X_15619073_SNP [dm6]	C	T	6.597e^-4	0.919	INTRON sog	TF binding site mE1_TFBS_cad
X	15513419	X_15513419_SNP [dm3] X_15619386_SNP [dm6]	C	T	6.597e^-4	0.919	INTRON sog	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18061336	2R_18061336_SNP [dm3] 2R_22173831_SNP [dm6]	A	G	6.624e^-4	0.919	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13837618	3L_13837618_SNP [dm3] 3L_13844518_SNP [dm6]	A	C	6.630e^-4	0.919	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25114656	3R_25114656_SNP [dm3] 3R_29288934_SNP [dm6]	T	C	6.631e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15264252	2R_15264252_INS [dm3] 2R_19376747_INS [dm6]	G	GTCAGTTCGGTG...	6.640e^-4	0.919	UTR_5_PRIME CG10062 INTRON CG10062
3R	4388141	3R_4388141_SNP [dm3] 3R_8562419_SNP [dm6]	T	A	6.649e^-4	0.919	SYNONYMOUS_CODING mRpS18A UPSTREAM CG31460 & 1 other DOWNSTREAM CR44291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3905057	3L_3905057_SNP [dm3] 3L_3905057_SNP [dm6]	C	T	6.649e^-4	0.919	UPSTREAM ida DOWNSTREAM Sc2 INTERGENIC
2R	17519244	2R_17519244_SNP [dm3] 2R_21631739_SNP [dm6]	G	T	6.651e^-4	0.919	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	743910	3L_743910_SNP [dm3] 3L_743910_SNP [dm6]	T	A	6.653e^-4	0.919	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24693813	3R_24693813_SNP [dm3] 3R_28868091_SNP [dm6]	T	C	6.660e^-4	0.919	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
2R	6142515	2R_6142515_SNP [dm3] 2R_10255010_SNP [dm6]	T	G	6.680e^-4	0.919	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
3R	9537229	3R_9537229_SNP [dm3] 3R_13711507_SNP [dm6]	T	C	6.710e^-4	0.919	SYNONYMOUS_CODING primo-2 START_GAINED primo-1 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16862728	3L_16862728_DEL [dm3] 3L_16869628_DEL [dm6]	TCCATGTTGCGTTTTTGCTA...	T	6.716e^-4	0.919	INTRON Lmpt
3L	5935840	3L_5935840_SNP [dm3] 3L_5942740_SNP [dm6]	C	G	6.718e^-4	0.919	INTRON CG33993
3L	5935846	3L_5935846_DEL [dm3] 3L_5942746_DEL [dm6]	ATAGC	A	6.718e^-4	0.919	INTRON CG33993
3R	24279717	3R_24279717_SNP [dm3] 3R_28453995_SNP [dm6]	A	T	6.719e^-4	0.919	INTRON beat-VI
3R	2049872	3R_2049872_SNP [dm3] 3R_6224150_SNP [dm6]	T	C	6.725e^-4	0.919	INTERGENIC
2R	13060102	2R_13060102_SNP [dm3] 2R_17172597_SNP [dm6]	T	C	6.731e^-4	0.919	INTERGENIC
3L	12849624	3L_12849624_SNP [dm3] 3L_12856524_SNP [dm6]	G	C	6.754e^-4	0.919	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
3L	13943340	3L_13943340_SNP [dm3] 3L_13950240_SNP [dm6]	T	C	6.763e^-4	0.919	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24093906	3R_24093906_SNP [dm3] 3R_28268184_SNP [dm6]	A	G	6.764e^-4	0.919	INTERGENIC
3L	917421	3L_917421_INS [dm3] 3L_917421_INS [dm6]	T	TTGGGT	6.766e^-4	0.919	INTRON Glut1
2L	3585574	2L_3585574_SNP [dm3] 2L_3585574_SNP [dm6]	A	G	6.774e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6907110	2L_6907110_SNP [dm3] 2L_6907110_SNP [dm6]	A	G	6.785e^-4	0.919	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
3R	24314637	3R_24314637_SNP [dm3] 3R_28488915_SNP [dm6]	T	C	6.787e^-4	0.919	INTRON Dhc98D
2L	2826088	2L_2826088_SNP [dm3] 2L_2826088_SNP [dm6]	T	G	6.789e^-4	0.919	UPSTREAM CG3123 INTRON Duox
3L	13541900	3L_13541900_INS [dm3] 3L_13548800_INS [dm6]	A	ATA	6.796e^-4	0.919	INTRON bru-3
X	8563373	X_8563373_SNP [dm3] X_8669340_SNP [dm6]	C	T	6.805e^-4	0.919	INTERGENIC
3L	16262951	3L_16262951_SNP [dm3] 3L_16269851_SNP [dm6]	T	C	6.810e^-4	0.919	UTR_3_PRIME CG13068 DOWNSTREAM CG34248
2L	5303793	2L_5303793_SNP [dm3] 2L_5303793_SNP [dm6]	G	A	6.812e^-4	0.919	INTRON vri
2L	5303796	2L_5303796_SNP [dm3] 2L_5303796_SNP [dm6]	T	C	6.812e^-4	0.919	INTRON vri
2L	12200176	2L_12200176_SNP [dm3] 2L_12200176_SNP [dm6]	G	T	6.814e^-4	0.919	INTRON aret
2R	19010481	2R_19010481_SNP [dm3] 2R_23122958_SNP [dm6]	T	A	6.817e^-4	0.919	DOWNSTREAM Klp59C INTERGENIC
3L	6555989	3L_6555989_DEL [dm3] 3L_6562889_DEL [dm6]	GATGAAGTTCATTTGCCGAT...	C	6.819e^-4	0.919	DOWNSTREAM jv INTRON CG18769
2R	3659431	2R_3659431_SNP [dm3] 2R_7771926_SNP [dm6]	G	A	6.860e^-4	0.919	INTRON CG30497 & 1 other
2L	6520237	2L_6520237_SNP [dm3] 2L_6520237_SNP [dm6]	T	A	6.876e^-4	0.919	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	9081937	3L_9081937_SNP [dm3] 3L_9088837_SNP [dm6]	A	C	6.879e^-4	0.919	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	4049154	3L_4049154_SNP [dm3] 3L_4049154_SNP [dm6]	A	C	6.886e^-4	0.919	INTRON CG1136
3L	4049196	3L_4049196_SNP [dm3] 3L_4049196_SNP [dm6]	C	T	6.886e^-4	0.919	INTRON CG1136
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	6.890e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19766802	X_19766802_SNP [dm3] X_19872769_SNP [dm6]	G	T	6.895e^-4	0.919	INTRON Hers	transposable element FlyBase
3R	13626283	3R_13626283_SNP [dm3] 3R_17800561_SNP [dm6]	A	T	6.906e^-4	0.919	DOWNSTREAM CG17806 INTRON CG17803
3L	5468982	3L_5468982_SNP [dm3] 3L_5475882_SNP [dm6]	A	G	6.916e^-4	0.919	INTERGENIC
X	2328932	X_2328932_SNP [dm3] X_2434899_SNP [dm6]	G	T	6.919e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4801069	3L_4801069_DEL [dm3] 3L_4801069_DEL [dm6]	TT	T	6.928e^-4	0.919	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
2L	11360169	2L_11360169_SNP [dm3] 2L_11360169_SNP [dm6]	A	G	6.935e^-4	0.919	INTRON salr	regulatory region REDfly_CRMs
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	6.948e^-4	0.919	DOWNSTREAM CR44775 INTRON CG31637
3L	9549388	3L_9549388_SNP [dm3] 3L_9556288_SNP [dm6]	A	C	6.956e^-4	0.919	INTRON CG42673
2R	17560562	2R_17560562_SNP [dm3] 2R_21673057_SNP [dm6]	T	C	6.972e^-4	0.919	DOWNSTREAM CG15676 INTERGENIC
3L	20156669	3L_20156669_SNP [dm3] 3L_20163569_SNP [dm6]	T	C	6.981e^-4	0.919	NON_SYNONYMOUS_CODING CG42674 INTRON CG42674	TF binding site mE1_TFBS_chinmo
3L	2610285	3L_2610285_SNP [dm3] 3L_2610285_SNP [dm6]	C	T	7.001e^-4	0.919	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27294839	3R_27294839_SNP [dm3] 3R_31469117_SNP [dm6]	C	T	7.010e^-4	0.919	EXON CR45554	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
X	11232487	X_11232487_SNP [dm3] X_11338454_SNP [dm6]	C	A	7.030e^-4	0.919	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2R	4951280	2R_4951280_SNP [dm3] 2R_9063775_SNP [dm6]	T	C	7.041e^-4	0.919	INTRON ana	regulatory region REDfly_CRMs
3R	10094809	3R_10094809_SNP [dm3] 3R_14269087_SNP [dm6]	C	A	7.043e^-4	0.919	NON_SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25927340	3R_25927340_SNP [dm3] 3R_30101618_SNP [dm6]	C	T	7.079e^-4	0.919	INTRON sima
2R	16995521	2R_16995521_SNP [dm3] 2R_21108016_SNP [dm6]	C	T	7.106e^-4	0.919	INTRON ktub
3L	18250995	3L_18250995_SNP [dm3] 3L_18257895_SNP [dm6]	C	G	7.110e^-4	0.919	INTERGENIC
3R	15023420	3R_15023420_SNP [dm3] 3R_19197698_SNP [dm6]	C	T	7.120e^-4	0.919	INTRON CG31475
3R	8257444	3R_8257444_SNP [dm3] 3R_12431722_SNP [dm6]	A	T	7.126e^-4	0.919	DOWNSTREAM CG5245 & 1 other INTRON Prosalpha2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	5059779	X_5059779_SNP [dm3] X_5165746_SNP [dm6]	A	T	7.128e^-4	0.919	INTRON rg & 1 other
3L	332490	3L_332490_SNP [dm3] 3L_332490_SNP [dm6]	C	A	7.129e^-4	0.919	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	1196368	2L_1196368_SNP [dm3] 2L_1196368_SNP [dm6]	C	T	7.130e^-4	0.919	SYNONYMOUS_CODING CG5001
3R	24361530	3R_24361530_SNP [dm3] 3R_28535808_SNP [dm6]	A	C	7.137e^-4	0.919	INTRON Ppn
2R	10271363	2R_10271363_SNP [dm3] 2R_14383858_SNP [dm6]	C	A	7.147e^-4	0.919	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da
3R	23869858	3R_23869858_SNP [dm3] 3R_28044136_SNP [dm6]	G	A	7.147e^-4	0.919	INTRON CG34362
3R	27081920	3R_27081920_SNP [dm3] 3R_31256198_SNP [dm6]	A	C	7.149e^-4	0.919	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
2L	1196454	2L_1196454_SNP [dm3] 2L_1196454_SNP [dm6]	C	G	7.157e^-4	0.919	UTR_3_PRIME CG5001
3R	10607044	3R_10607044_SNP [dm3] 3R_14781322_SNP [dm6]	G	A	7.158e^-4	0.919	INTRON jvl
3L	1179259	3L_1179259_SNP [dm3] 3L_1179259_SNP [dm6]	T	A	7.162e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19378082	2L_19378082_INS [dm3] 2L_19378082_INS [dm6]	C	CC	7.163e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4492574	3L_4492574_SNP [dm3] 3L_4492574_SNP [dm6]	G	T	7.163e^-4	0.919	INTERGENIC
3R	9479976	3R_9479976_SNP [dm3] 3R_13654254_SNP [dm6]	T	A	7.168e^-4	0.919	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	2181480	3R_2181480_SNP [dm3] 3R_6355758_SNP [dm6]	C	A	7.172e^-4	0.919	INTRON Pak
3R	26123095	3R_26123095_SNP [dm3] 3R_30297373_SNP [dm6]	A	T	7.175e^-4	0.919	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	956368	3L_956368_SNP [dm3] 3L_956368_SNP [dm6]	G	T	7.188e^-4	0.919	INTRON Glut1
3R	7859628	3R_7859628_SNP [dm3] 3R_12033906_SNP [dm6]	G	C	7.196e^-4	0.919	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12645086	3R_12645086_SNP [dm3] 3R_16819364_SNP [dm6]	A	C	7.205e^-4	0.919	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7629798	3L_7629798_SNP [dm3] 3L_7636698_SNP [dm6]	C	A	7.233e^-4	0.919	SPLICE_SITE_REGION CG33275 INTRON CG33275	TF binding site mE1_TFBS_HSA
X	14382849	X_14382849_SNP [dm3] X_14488816_SNP [dm6]	G	T	7.238e^-4	0.919	INTERGENIC
2R	8358219	2R_8358219_SNP [dm3] 2R_12470714_SNP [dm6]	C	T	7.241e^-4	0.919	SYNONYMOUS_CODING CG8545 INTRON dgt5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12644673	3R_12644673_DEL [dm3] 3R_16818951_DEL [dm6]	TCT	T	7.270e^-4	0.919	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3332258	2R_3332258_SNP [dm3] 2R_7444753_SNP [dm6]	C	G	7.280e^-4	0.919	UTR_5_PRIME CG30503 UTR_3_PRIME kappaB-Ras UPSTREAM CG30503 DOWNSTREAM kappaB-Ras & 1 other
2L	14674963	2L_14674963_SNP [dm3] 2L_14674963_SNP [dm6]	T	G	7.282e^-4	0.919	INTRON osp
3R	15307574	3R_15307574_SNP [dm3] 3R_19481852_SNP [dm6]	A	C	7.289e^-4	0.919	SYNONYMOUS_CODING Dys
3R	19538196	3R_19538196_SNP [dm3] 3R_23712474_SNP [dm6]	T	A	7.293e^-4	0.919	SPLICE_SITE_REGION CG10300 DOWNSTREAM nau INTRON CG10300
3R	15010576	3R_15010576_SNP [dm3] 3R_19184854_SNP [dm6]	A	T	7.309e^-4	0.919	INTRON CG31475
3L	7325434	3L_7325434_SNP [dm3] 3L_7332334_SNP [dm6]	T	G	7.316e^-4	0.919	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14425262	3R_14425262_SNP [dm3] 3R_18599540_SNP [dm6]	C	T	7.323e^-4	0.919	SYNONYMOUS_CODING CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18925501	2R_18925501_SNP [dm3] 2R_23037978_SNP [dm6]	A	T	7.340e^-4	0.919	INTRON twi & 1 other
2L	6898496	2L_6898496_INS [dm3] 2L_6898496_INS [dm6]	A	AGATGGGA	7.353e^-4	0.919	INTRON Nlg2
3L	14761108	3L_14761108_SNP [dm3] 3L_14768008_SNP [dm6]	C	T	7.356e^-4	0.919	NON_SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
2L	4444658	2L_4444658_SNP [dm3] 2L_4444658_SNP [dm6]	A	G	7.356e^-4	0.919	UTR_5_PRIME morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19807755	2L_19807755_SNP [dm3] 2L_19807755_SNP [dm6]	T	C	7.358e^-4	0.919	INTRON sick
2L	19807756	2L_19807756_SNP [dm3] 2L_19807756_SNP [dm6]	C	T	7.358e^-4	0.919	INTRON sick
2R	17719390	2R_17719390_SNP [dm3] 2R_21831885_SNP [dm6]	C	A	7.367e^-4	0.919	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2R	6142361	2R_6142361_SNP [dm3] 2R_10254856_SNP [dm6]	T	C	7.383e^-4	0.919	UTR_3_PRIME CG12913	TF binding site mE1_TFBS_cad
2R	6142362	2R_6142362_SNP [dm3] 2R_10254857_SNP [dm6]	C	T	7.383e^-4	0.919	UTR_3_PRIME CG12913	TF binding site mE1_TFBS_cad
X	13828577	X_13828577_INS [dm3] X_13934544_INS [dm6]	A	AA	7.400e^-4	0.919	INTRON mamo	TF binding site mE1_TFBS_HSA
3L	2538349	3L_2538349_SNP [dm3] 3L_2538349_SNP [dm6]	C	T	7.420e^-4	0.919	INTRON Spn
3L	2538364	3L_2538364_SNP [dm3] 3L_2538364_SNP [dm6]	A	G	7.420e^-4	0.919	INTRON Spn
3L	14640938	3L_14640938_SNP [dm3] 3L_14647838_SNP [dm6]	C	T	7.429e^-4	0.919	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9197249	3R_9197249_SNP [dm3] 3R_13371527_SNP [dm6]	T	A	7.432e^-4	0.919	INTRON Lip3
X	20865778	X_20865778_SNP [dm3] X_20994751_SNP [dm6]	T	C	7.439e^-4	0.919	INTERGENIC
2R	11039792	2R_11039792_SNP [dm3] 2R_15152287_SNP [dm6]	T	A	7.444e^-4	0.919	INTERGENIC
X	20893462	X_20893462_SNP [dm3] X_21022435_SNP [dm6]	G	C	7.444e^-4	0.919	DOWNSTREAM r-cup INTERGENIC
3R	16396602	3R_16396602_SNP [dm3] 3R_20570880_SNP [dm6]	A	T	7.467e^-4	0.919	INTRON CG5191
3R	16396608	3R_16396608_SNP [dm3] 3R_20570886_SNP [dm6]	C	T	7.467e^-4	0.919	INTRON CG5191
3R	8979756	3R_8979756_SNP [dm3] 3R_13154034_SNP [dm6]	C	T	7.469e^-4	0.919	INTRON timeout & 2 others
2R	12779517	2R_12779517_SNP [dm3] 2R_16892012_SNP [dm6]	T	C	7.474e^-4	0.919	INTRON CG8910	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3535729	X_3535729_SNP [dm3] X_3641696_SNP [dm6]	G	C	7.476e^-4	0.919	INTRON AstA-R1
3R	26976404	3R_26976404_SNP [dm3] 3R_31150682_SNP [dm6]	C	T	7.479e^-4	0.919	SYNONYMOUS_CODING Gycbeta100B
2L	9416398	2L_9416398_SNP [dm3] 2L_9416398_SNP [dm6]	G	T	7.521e^-4	0.919	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7624553	3L_7624553_SNP [dm3] 3L_7631453_SNP [dm6]	G	A	7.523e^-4	0.919	INTRON CG33275
3R	2137239	3R_2137239_SNP [dm3] 3R_6311517_SNP [dm6]	G	A	7.528e^-4	0.919	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7793251	2R_7793251_SNP [dm3] 2R_11905746_SNP [dm6]	C	T	7.540e^-4	0.919	SYNONYMOUS_CODING CG13183
2L	8307661	2L_8307661_SNP [dm3] 2L_8307661_SNP [dm6]	G	C	7.542e^-4	0.919	SYNONYMOUS_CODING Ostgamma UPSTREAM CG7818 DOWNSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1145145	2L_1145145_SNP [dm3] 2L_1145145_SNP [dm6]	G	T	7.553e^-4	0.919	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	21699227	2L_21699227_SNP [dm3] 2L_21699227_SNP [dm6]	T	G	7.561e^-4	0.919	INTRON CG31619	transposable element FlyBase
3R	16738745	3R_16738745_SNP [dm3] 3R_20913023_SNP [dm6]	T	G	7.565e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738773	3R_16738773_SNP [dm3] 3R_20913051_SNP [dm6]	A	T	7.565e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738779	3R_16738779_SNP [dm3] 3R_20913057_SNP [dm6]	T	A	7.565e^-4	0.919	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11714319	2R_11714319_INS [dm3] 2R_15826814_INS [dm6]	T	TTT	7.594e^-4	0.919	UTR_3_PRIME Poxn INTRON tun
3L	7325501	3L_7325501_SNP [dm3] 3L_7332401_SNP [dm6]	G	A	7.596e^-4	0.919	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19750078	X_19750078_SNP [dm3] X_19856045_SNP [dm6]	A	G	7.610e^-4	0.919	INTRON Nup205	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17101725	2R_17101725_SNP [dm3] 2R_21214220_SNP [dm6]	T	C	7.610e^-4	0.919	SYNONYMOUS_CODING CG4302
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	7.612e^-4	0.919	INTRON bru-3
3L	7070099	3L_7070099_SNP [dm3] 3L_7076999_SNP [dm6]	T	C	7.622e^-4	0.919	INTRON CG8641
3L	13336552	3L_13336552_SNP [dm3] 3L_13343452_SNP [dm6]	T	A	7.624e^-4	0.919	DOWNSTREAM CR44559 INTERGENIC
2L	4429945	2L_4429945_SNP [dm3] 2L_4429945_SNP [dm6]	T	C	7.648e^-4	0.919	INTRON CG15431
3R	9604479	3R_9604479_SNP [dm3] 3R_13778757_SNP [dm6]	A	C	7.651e^-4	0.919	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
3R	19137387	3R_19137387_SNP [dm3] 3R_23311665_SNP [dm6]	T	A	7.655e^-4	0.919	INTRON pnt
3R	23867812	3R_23867812_SNP [dm3] 3R_28042090_SNP [dm6]	C	G	7.660e^-4	0.919	INTRON CG34362
2L	1312803	2L_1312803_SNP [dm3] 2L_1312803_SNP [dm6]	G	T	7.667e^-4	0.919	INTERGENIC
3L	10220846	3L_10220846_SNP [dm3] 3L_10227746_SNP [dm6]	G	A	7.668e^-4	0.919	INTERGENIC
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	7.670e^-4	0.919	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
3R	26936193	3R_26936193_SNP [dm3] 3R_31110471_SNP [dm6]	G	A	7.682e^-4	0.919	INTERGENIC
3R	25602650	3R_25602650_SNP [dm3] 3R_29776928_SNP [dm6]	T	G	7.722e^-4	0.919	INTRON kay
3R	25602651	3R_25602651_SNP [dm3] 3R_29776929_SNP [dm6]	A	G	7.722e^-4	0.919	INTRON kay
X	15519264	X_15519264_INS [dm3] X_15625231_INS [dm6]	A	ATATGCGGTT	7.733e^-4	0.919	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17560537	2R_17560537_SNP [dm3] 2R_21673032_SNP [dm6]	T	C	7.734e^-4	0.919	DOWNSTREAM CG15676 INTERGENIC
2L	9647852	2L_9647852_SNP [dm3] 2L_9647852_SNP [dm6]	T	C	7.738e^-4	0.919	SYNONYMOUS_CODING Apoltp
X	19517597	X_19517597_SNP [dm3] X_19623564_SNP [dm6]	G	A	7.757e^-4	0.919	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2989737	2L_2989737_SNP [dm3] 2L_2989737_SNP [dm6]	C	T	7.759e^-4	0.919	UTR_3_PRIME Bem46 & 1 other
2R	9867155	2R_9867155_SNP [dm3] 2R_13979650_SNP [dm6]	C	G	7.772e^-4	0.919	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9867167	2R_9867167_SNP [dm3] 2R_13979662_SNP [dm6]	A	G	7.772e^-4	0.919	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26000154	3R_26000154_SNP [dm3] 3R_30174432_SNP [dm6]	G	A	7.772e^-4	0.919	INTRON Mlc2
2L	1855024	2L_1855024_SNP [dm3] 2L_1855024_SNP [dm6]	G	T	7.806e^-4	0.919	INTRON wry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3901582	2L_3901582_SNP [dm3] 2L_3901582_SNP [dm6]	T	C	7.806e^-4	0.919	INTRON capu
2L	4132503	2L_4132503_SNP [dm3] 2L_4132503_SNP [dm6]	G	T	7.806e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12442709	2R_12442709_SNP [dm3] 2R_16555204_SNP [dm6]	G	A	7.806e^-4	0.919	SYNONYMOUS_CODING Syn2
3L	19997154	3L_19997154_SNP [dm3] 3L_20004054_SNP [dm6]	C	T	7.806e^-4	0.919	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	19998318	3L_19998318_SNP [dm3] 3L_20005218_SNP [dm6]	C	T	7.806e^-4	0.919	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	20000093	3L_20000093_SNP [dm3] 3L_20006993_SNP [dm6]	G	T	7.806e^-4	0.919	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18167777	3R_18167777_SNP [dm3] 3R_22342055_SNP [dm6]	G	T	7.806e^-4	0.919	INTRON CG5386	TF binding site mE1_TFBS_inv
3R	18506002	3R_18506002_SNP [dm3] 3R_22680280_SNP [dm6]	G	A	7.806e^-4	0.919	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23947828	3R_23947828_SNP [dm3] 3R_28122106_SNP [dm6]	G	A	7.806e^-4	0.919	INTERGENIC
3R	25156272	3R_25156272_SNP [dm3] 3R_29330550_SNP [dm6]	G	A	7.806e^-4	0.919	INTERGENIC
X	7571178	X_7571178_SNP [dm3] X_7677145_SNP [dm6]	C	T	7.806e^-4	0.919	UTR_3_PRIME ct
3L	7902301	3L_7902301_SNP [dm3] 3L_7909201_SNP [dm6]	A	G	7.824e^-4	0.919	SYNONYMOUS_CODING pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18699235	2R_18699235_SNP [dm3] 2R_22811730_SNP [dm6]	C	T	7.829e^-4	0.919	INTRON stl
3R	18714619	3R_18714619_DEL [dm3] 3R_22888897_DEL [dm6]	TT	T	7.832e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2428483	3L_2428483_SNP [dm3] 3L_2428483_SNP [dm6]	A	T	7.834e^-4	0.919	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10809083	X_10809083_SNP [dm3] X_10915050_SNP [dm6]	G	A	7.857e^-4	0.919	INTRON CG43901
X	16566287	X_16566287_SNP [dm3] X_16672254_SNP [dm6]	C	T	7.884e^-4	0.919	INTRON CG13012
2R	15929214	2R_15929214_SNP [dm3] 2R_20041709_SNP [dm6]	C	T	7.885e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	7.894e^-4	0.919	SYNONYMOUS_CODING CG13840
3L	7908473	3L_7908473_SNP [dm3] 3L_7915373_SNP [dm6]	G	A	7.894e^-4	0.919	UPSTREAM CG32368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27441427	3R_27441427_SNP [dm3] 3R_31615705_SNP [dm6]	A	T	7.929e^-4	0.919	NON_SYNONYMOUS_CODING CG11539 UPSTREAM CG1792 DOWNSTREAM Med	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11324528	X_11324528_SNP [dm3] X_11430495_SNP [dm6]	C	T	7.932e^-4	0.919	DOWNSTREAM Evi5 & 1 other INTERGENIC
3L	2219404	3L_2219404_SNP [dm3] 3L_2219404_SNP [dm6]	T	G	7.933e^-4	0.919	INTERGENIC
3R	10312363	3R_10312363_SNP [dm3] 3R_14486641_SNP [dm6]	T	A	7.949e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2989708	2L_2989708_SNP [dm3] 2L_2989708_SNP [dm6]	A	G	7.956e^-4	0.919	UTR_3_PRIME Bem46 & 1 other
3R	12061896	3R_12061896_SNP [dm3] 3R_16236174_SNP [dm6]	G	T	7.957e^-4	0.919	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2685951	3L_2685951_SNP [dm3] 3L_2685951_SNP [dm6]	A	T	7.971e^-4	0.919	INTRON Fife
3L	1452426	3L_1452426_DEL [dm3] 3L_1452426_DEL [dm6]	ATAGTA	A	7.993e^-4	0.919	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	1452437	3L_1452437_DEL [dm3] 3L_1452437_DEL [dm6]	TACGT	T	7.993e^-4	0.919	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	15035094	2L_15035094_SNP [dm3] 2L_15035094_SNP [dm6]	T	A	7.993e^-4	0.919	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
2R	11470647	2R_11470647_SNP [dm3] 2R_15583142_SNP [dm6]	T	C	8.000e^-4	0.919	INTERGENIC
3L	2428413	3L_2428413_SNP [dm3] 3L_2428413_SNP [dm6]	G	T	8.015e^-4	0.919	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7846663	3R_7846663_SNP [dm3] 3R_12020941_SNP [dm6]	G	A	8.024e^-4	0.919	INTERGENIC
X	11824864	X_11824864_SNP [dm3] X_11930831_SNP [dm6]	T	A	8.035e^-4	0.919	UTR_5_PRIME CG10362 DOWNSTREAM cac
X	4087267	X_4087267_SNP [dm3] X_4193234_SNP [dm6]	C	T	8.041e^-4	0.919	INTRON Fas2	regulatory region REDfly_CRMs
2L	5715797	2L_5715797_SNP [dm3] 2L_5715797_SNP [dm6]	G	C	8.072e^-4	0.919	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
3R	24170737	3R_24170737_INS [dm3] 3R_28345015_INS [dm6]	A	AT	8.088e^-4	0.919	UTR_3_PRIME Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15519256	X_15519256_DEL [dm3] X_15625223_DEL [dm6]	ATAACTCA	A	8.099e^-4	0.919	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25833677	3R_25833677_SNP [dm3] 3R_30007955_SNP [dm6]	T	G	8.105e^-4	0.919	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7631240	3L_7631240_SNP [dm3] 3L_7638140_SNP [dm6]	C	T	8.110e^-4	0.919	INTRON CG33275
3L	7631513	3L_7631513_SNP [dm3] 3L_7638413_SNP [dm6]	G	A	8.110e^-4	0.919	SYNONYMOUS_CODING CG33275
3L	7631816	3L_7631816_SNP [dm3] 3L_7638716_SNP [dm6]	C	T	8.110e^-4	0.919	INTRON CG33275
3L	7631849	3L_7631849_SNP [dm3] 3L_7638749_SNP [dm6]	T	A	8.110e^-4	0.919	UPSTREAM snoRNA:Me18S-A1806 INTRON CG33275
3L	7631851	3L_7631851_SNP [dm3] 3L_7638751_SNP [dm6]	A	T	8.110e^-4	0.919	UPSTREAM snoRNA:Me18S-A1806 INTRON CG33275
3L	16636362	3L_16636362_SNP [dm3] 3L_16643262_SNP [dm6]	A	G	8.115e^-4	0.919	INTRON Abl
2L	7171322	2L_7171322_SNP [dm3] 2L_7171322_SNP [dm6]	G	A	8.119e^-4	0.919	INTERGENIC
3R	24478271	3R_24478271_SNP [dm3] 3R_28652549_SNP [dm6]	G	C	8.121e^-4	0.919	INTERGENIC
2L	19935196	2L_19935196_SNP [dm3] 2L_19935196_SNP [dm6]	T	A	8.153e^-4	0.919	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20534979	X_20534979_INS [dm3] X_20663952_INS [dm6]	G	GGTCG	8.158e^-4	0.919	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14367962	2L_14367962_SNP [dm3] 2L_14367962_SNP [dm6]	G	A	8.165e^-4	0.919	INTERGENIC
X	13224435	X_13224435_SNP [dm3] X_13330402_SNP [dm6]	T	G	8.170e^-4	0.919	UTR_5_PRIME Jafrac1 UPSTREAM Jafrac1 INTRON Jafrac1
3L	12834063	3L_12834063_SNP [dm3] 3L_12840963_SNP [dm6]	A	G	8.172e^-4	0.919	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	15298316	X_15298316_SNP [dm3] X_15404283_SNP [dm6]	C	T	8.172e^-4	0.919	INTRON Cngl
3L	14153724	3L_14153724_SNP [dm3] 3L_14160624_SNP [dm6]	T	A	8.173e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs
3R	18350246	3R_18350246_SNP [dm3] 3R_22524524_SNP [dm6]	T	C	8.173e^-4	0.919	INTRON CG5346
3R	23922295	3R_23922295_SNP [dm3] 3R_28096573_SNP [dm6]	C	T	8.182e^-4	0.919	INTERGENIC
2L	14367893	2L_14367893_SNP [dm3] 2L_14367893_SNP [dm6]	T	A	8.204e^-4	0.919	INTERGENIC

By genomic position
Variant impact
Gene name

sons1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results