DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.078e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.036517

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	3.7532	0.0527

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1064 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16665677	2L_16665677_SNP [dm3] 2L_16665677_SNP [dm6]	G	C	1.977e^-6	0.935	INTRON Trpgamma	transposable element FlyBase
X	6455644	X_6455644_SNP [dm3] X_6561611_SNP [dm6]	G	C	9.581e^-6	0.935	INTRON CG34417	TF binding site mE1_TFBS_sens
2L	16665679	2L_16665679_SNP [dm3] 2L_16665679_SNP [dm6]	G	T	1.042e^-5	0.935	INTRON Trpgamma	transposable element FlyBase
3R	1807153	3R_1807153_SNP [dm3] 3R_5981431_SNP [dm6]	G	A	1.186e^-5	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	1.259e^-5	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	6372137	3L_6372137_SNP [dm3] 3L_6379037_SNP [dm6]	T	A	1.663e^-5	0.935	INTERGENIC
X	6455411	X_6455411_SNP [dm3] X_6561378_SNP [dm6]	A	G	1.850e^-5	0.935	SYNONYMOUS_CODING CG34417
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	1.877e^-5	0.935	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
3R	15241640	3R_15241640_SNP [dm3] 3R_19415918_SNP [dm6]	C	T	1.916e^-5	0.935	START_GAINED CG31221 UTR_5_PRIME CG31221
2L	9724105	2L_9724105_SNP [dm3] 2L_9724105_SNP [dm6]	G	T	2.078e^-5	0.935	INTRON Nckx30C
2R	19849634	2R_19849634_SNP [dm3] 2R_23962111_SNP [dm6]	T	C	2.390e^-5	0.935	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
2R	5504251	2R_5504251_SNP [dm3] 2R_9616746_SNP [dm6]	T	C	2.704e^-5	0.935	INTRON Mmp2
3R	18984689	3R_18984689_SNP [dm3] 3R_23158967_SNP [dm6]	G	A	3.000e^-5	0.935	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10600659	3R_10600659_SNP [dm3] 3R_14774937_SNP [dm6]	T	A	3.046e^-5	0.935	INTRON jvl
3R	10600664	3R_10600664_SNP [dm3] 3R_14774942_SNP [dm6]	C	A	3.046e^-5	0.935	INTRON jvl
X	13923955	X_13923955_SNP [dm3] X_14029922_SNP [dm6]	A	T	3.074e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13923970	X_13923970_SNP [dm3] X_14029937_SNP [dm6]	C	G	3.074e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15967419	3R_15967419_SNP [dm3] 3R_20141697_SNP [dm6]	C	A	3.096e^-5	0.935	INTERGENIC
3L	11639744	3L_11639744_SNP [dm3] 3L_11646644_SNP [dm6]	C	T	3.275e^-5	0.935	SYNONYMOUS_CODING RIOK1 UPSTREAM CG6071
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	3.829e^-5	0.935	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10995579	2L_10995579_SNP [dm3] 2L_10995579_SNP [dm6]	T	C	3.934e^-5	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	10995723	2L_10995723_SNP [dm3] 2L_10995723_SNP [dm6]	G	T	4.104e^-5	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	9457217	2L_9457217_SNP [dm3] 2L_9457217_SNP [dm6]	A	C	4.344e^-5	0.935	INTRON numb	TF binding site mE1_TFBS_sens
2R	10286749	2R_10286749_SNP [dm3] 2R_14399244_SNP [dm6]	A	G	4.387e^-5	0.935	INTERGENIC
2L	10441512	2L_10441512_SNP [dm3] 2L_10441512_SNP [dm6]	C	T	4.621e^-5	0.935	DOWNSTREAM CG13142 & 1 other INTERGENIC
3L	18933721	3L_18933721_SNP [dm3] 3L_18940621_SNP [dm6]	C	G	4.785e^-5	0.935	INTRON CG32204
3L	10667158	3L_10667158_SNP [dm3] 3L_10674058_SNP [dm6]	G	C	4.965e^-5	0.935	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2924383	2L_2924383_INS [dm3] 2L_2924383_INS [dm6]	G	GGG	5.025e^-5	0.935	INTRON lilli
2L	10995745	2L_10995745_SNP [dm3] 2L_10995745_SNP [dm6]	T	C	5.114e^-5	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	8323937	2L_8323937_SNP [dm3] 2L_8323937_SNP [dm6]	A	G	5.320e^-5	0.935	INTRON CG7781
2R	5791901	2R_5791901_SNP [dm3] 2R_9904396_SNP [dm6]	G	C	5.556e^-5	0.935	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	10286809	2R_10286809_SNP [dm3] 2R_14399304_SNP [dm6]	A	G	5.732e^-5	0.935	INTERGENIC
2R	10286811	2R_10286811_SNP [dm3] 2R_14399306_SNP [dm6]	T	G	5.732e^-5	0.935	INTERGENIC
3L	22334722	3L_22334722_SNP [dm3] 3L_22341622_SNP [dm6]	G	A	6.216e^-5	0.935	INTRON Ten-m
3L	13886119	3L_13886119_SNP [dm3] 3L_13893019_SNP [dm6]	G	A	6.702e^-5	0.935	INTRON dysc
3L	13886123	3L_13886123_SNP [dm3] 3L_13893023_SNP [dm6]	A	C	6.702e^-5	0.935	INTRON dysc
X	4490379	X_4490379_SNP [dm3] X_4596346_SNP [dm6]	C	T	6.795e^-5	0.935	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16382760	2L_16382760_SNP [dm3] 2L_16382760_SNP [dm6]	C	T	6.861e^-5	0.935	INTERGENIC
2R	3228744	2R_3228744_DEL [dm3] 2R_7341239_DEL [dm6]	GG	G	7.094e^-5	0.935	SPLICE_SITE_REGION Dscam1 INTRON Dscam1
2L	16382898	2L_16382898_SNP [dm3] 2L_16382898_SNP [dm6]	A	C	7.507e^-5	0.935	INTERGENIC
2R	5726508	2R_5726508_SNP [dm3] 2R_9839003_SNP [dm6]	A	G	7.507e^-5	0.935	SYNONYMOUS_CODING Lsm11 UPSTREAM CG1665 DOWNSTREAM CG1663	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	15986238	3L_15986238_INS [dm3] 3L_15993138_INS [dm6]	A	AA	7.657e^-5	0.935	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16429744	2R_16429744_SNP [dm3] 2R_20542239_SNP [dm6]	G	A	7.923e^-5	0.935	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6455420	X_6455420_SNP [dm3] X_6561387_SNP [dm6]	C	T	8.034e^-5	0.935	SYNONYMOUS_CODING CG34417
3L	12538647	3L_12538647_SNP [dm3] 3L_12545547_SNP [dm6]	C	A	8.045e^-5	0.935	INTRON sowah
3L	13886256	3L_13886256_SNP [dm3] 3L_13893156_SNP [dm6]	T	A	8.078e^-5	0.935	INTRON dysc
2L	6681415	2L_6681415_SNP [dm3] 2L_6681415_SNP [dm6]	T	G	8.257e^-5	0.935	INTRON Nhe3	TF binding site mE1_TFBS_inv
3R	19596781	3R_19596781_SNP [dm3] 3R_23771059_SNP [dm6]	A	G	9.054e^-5	0.935	SYNONYMOUS_CODING tst	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10667029	3L_10667029_SNP [dm3] 3L_10673929_SNP [dm6]	T	G	9.361e^-5	0.935	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19597042	3R_19597042_SNP [dm3] 3R_23771320_SNP [dm6]	T	C	9.685e^-5	0.935	SYNONYMOUS_CODING tst
3L	16854941	3L_16854941_SNP [dm3] 3L_16861841_SNP [dm6]	A	G	9.723e^-5	0.935	DOWNSTREAM CG13029 INTRON Rh4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	18151802	3L_18151802_SNP [dm3] 3L_18158702_SNP [dm6]	A	C	9.738e^-5	0.935	INTRON CG13699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18572953	X_18572953_SNP [dm3] X_18678920_SNP [dm6]	C	G	9.770e^-5	0.935	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17891927	3L_17891927_SNP [dm3] 3L_17898827_SNP [dm6]	T	C	1.005e^-4	0.935	DOWNSTREAM Prestin INTERGENIC
X	9227993	X_9227993_SNP [dm3] X_9333960_SNP [dm6]	C	T	1.041e^-4	0.935	INTRON CG34449
3R	798536	3R_798536_SNP [dm3] 3R_4972814_SNP [dm6]	A	G	1.066e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_ttk
2R	10286773	2R_10286773_INS [dm3] 2R_14399268_INS [dm6]	T	TTT	1.086e^-4	0.935	INTERGENIC
3L	19120397	3L_19120397_SNP [dm3] 3L_19127297_SNP [dm6]	T	A	1.117e^-4	0.935	INTRON CG14082	TF binding site mE1_TFBS_inv
3R	13768080	3R_13768080_SNP [dm3] 3R_17942358_SNP [dm6]	G	A	1.121e^-4	0.935	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11178081	3L_11178081_SNP [dm3] 3L_11184981_SNP [dm6]	G	A	1.132e^-4	0.935	INTRON GlcAT-P
2R	16073366	2R_16073366_SNP [dm3] 2R_20185861_SNP [dm6]	C	G	1.157e^-4	0.935	INTERGENIC
3L	22974919	3L_22974919_SNP [dm3] 3L_22981819_SNP [dm6]	T	C	1.180e^-4	0.935	INTERGENIC
2R	10096291	2R_10096291_SNP [dm3] 2R_14208786_SNP [dm6]	T	C	1.192e^-4	0.935	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13250274	3L_13250274_SNP [dm3] 3L_13257174_SNP [dm6]	T	A	1.199e^-4	0.935	INTRON caps
X	19015279	X_19015279_SNP [dm3] X_19121246_SNP [dm6]	G	T	1.222e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11756252	3L_11756252_SNP [dm3] 3L_11763152_SNP [dm6]	G	A	1.224e^-4	0.935	INTRON CG6024
X	12425281	X_12425281_SNP [dm3] X_12531248_SNP [dm6]	C	T	1.234e^-4	0.935	UPSTREAM CG43921 INTRON CG43921
X	12425305	X_12425305_SNP [dm3] X_12531272_SNP [dm6]	A	G	1.234e^-4	0.935	UPSTREAM CG43921 INTRON CG43921
3L	21349217	3L_21349217_SNP [dm3] 3L_21356117_SNP [dm6]	G	C	1.266e^-4	0.935	INTRON CG12971
3L	8899337	3L_8899337_SNP [dm3] 3L_8906237_SNP [dm6]	C	T	1.285e^-4	0.935	INTRON mfr
3L	6361188	3L_6361188_SNP [dm3] 3L_6368088_SNP [dm6]	T	C	1.288e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	16823477	3L_16823477_SNP [dm3] 3L_16830377_SNP [dm6]	C	G	1.295e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8163686	3L_8163686_SNP [dm3] 3L_8170586_SNP [dm6]	A	C	1.330e^-4	0.935	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	8163697	3L_8163697_SNP [dm3] 3L_8170597_SNP [dm6]	T	A	1.330e^-4	0.935	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	2924944	2L_2924944_SNP [dm3] 2L_2924944_SNP [dm6]	A	G	1.339e^-4	0.935	UTR_5_PRIME lilli INTRON lilli
2R	8898268	2R_8898268_SNP [dm3] 2R_13010763_SNP [dm6]	C	T	1.352e^-4	0.935	INTERGENIC
2R	4936249	2R_4936249_SNP [dm3] 2R_9048744_SNP [dm6]	G	A	1.365e^-4	0.935	INTRON CG13743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16794573	2R_16794573_SNP [dm3] 2R_20907068_SNP [dm6]	G	A	1.383e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	6681395	2L_6681395_INS [dm3] 2L_6681395_INS [dm6]	G	GG	1.396e^-4	0.935	SPLICE_SITE_REGION Nhe3 INTRON Nhe3	TF binding site mE1_TFBS_inv
2R	3091913	2R_3091913_SNP [dm3] 2R_7204408_SNP [dm6]	A	G	1.421e^-4	0.935	INTRON pk
3L	11679686	3L_11679686_SNP [dm3] 3L_11686586_SNP [dm6]	G	C	1.426e^-4	0.935	INTRON Sug
3L	11679696	3L_11679696_SNP [dm3] 3L_11686596_SNP [dm6]	T	A	1.426e^-4	0.935	INTRON Sug
2L	2925096	2L_2925096_SNP [dm3] 2L_2925096_SNP [dm6]	C	T	1.431e^-4	0.935	START_GAINED lilli UTR_5_PRIME lilli INTRON lilli
2R	8898282	2R_8898282_SNP [dm3] 2R_13010777_SNP [dm6]	T	A	1.442e^-4	0.935	INTERGENIC
2R	8898285	2R_8898285_SNP [dm3] 2R_13010780_SNP [dm6]	T	C	1.442e^-4	0.935	INTERGENIC
3R	18795593	3R_18795593_SNP [dm3] 3R_22969871_SNP [dm6]	T	A	1.456e^-4	0.935	INTERGENIC
2R	5399269	2R_5399269_SNP [dm3] 2R_9511764_SNP [dm6]	C	A	1.483e^-4	0.935	INTRON brp
2R	5399270	2R_5399270_SNP [dm3] 2R_9511765_SNP [dm6]	A	C	1.483e^-4	0.935	INTRON brp
3L	13886163	3L_13886163_SNP [dm3] 3L_13893063_SNP [dm6]	A	C	1.485e^-4	0.935	INTRON dysc
3L	13886167	3L_13886167_SNP [dm3] 3L_13893067_SNP [dm6]	G	A	1.485e^-4	0.935	INTRON dysc
2R	10286824	2R_10286824_SNP [dm3] 2R_14399319_SNP [dm6]	C	G	1.492e^-4	0.935	INTERGENIC
3L	6359446	3L_6359446_SNP [dm3] 3L_6366346_SNP [dm6]	T	A	1.493e^-4	0.935	INTERGENIC
2L	10995633	2L_10995633_SNP [dm3] 2L_10995633_SNP [dm6]	C	T	1.494e^-4	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	11681204	3L_11681204_SNP [dm3] 3L_11688104_SNP [dm6]	A	T	1.496e^-4	0.935	INTRON Sug
3L	11677393	3L_11677393_SNP [dm3] 3L_11684293_SNP [dm6]	A	T	1.513e^-4	0.935	START_GAINED Sug UTR_5_PRIME Sug DOWNSTREAM TfIIEalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1405874	2R_1405874_SNP [dm3] 2R_5518369_SNP [dm6]	T	C	1.534e^-4	0.935	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
3L	11756235	3L_11756235_INS [dm3] 3L_11763135_INS [dm6]	A	AGGATATAAA	1.536e^-4	0.935	INTRON CG6024
2R	8898286	2R_8898286_SNP [dm3] 2R_13010781_SNP [dm6]	C	A	1.558e^-4	0.935	INTERGENIC
3R	27068250	3R_27068250_SNP [dm3] 3R_31242528_SNP [dm6]	T	A	1.562e^-4	0.935	INTRON qless
2R	18287811	2R_18287811_SNP [dm3] 2R_22400306_SNP [dm6]	C	G	1.568e^-4	0.935	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11743819	2R_11743819_SNP [dm3] 2R_15856314_SNP [dm6]	A	G	1.574e^-4	0.935	DOWNSTREAM tun INTRON CG12970
3R	13739947	3R_13739947_SNP [dm3] 3R_17914225_SNP [dm6]	C	T	1.580e^-4	0.935	INTRON Rim
2R	5765974	2R_5765974_SNP [dm3] 2R_9878469_SNP [dm6]	G	A	1.581e^-4	0.935	SYNONYMOUS_CODING Sec24AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1890065	X_1890065_SNP [dm3] X_1996032_SNP [dm6]	T	A	1.595e^-4	0.935	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23987612	3R_23987612_SNP [dm3] 3R_28161890_SNP [dm6]	A	C	1.599e^-4	0.935	INTRON CG34354
X	340278	X_340278_SNP [dm3] X_446245_SNP [dm6]	C	G	1.603e^-4	0.935	INTRON CG32816
2L	16382804	2L_16382804_SNP [dm3] 2L_16382804_SNP [dm6]	A	T	1.605e^-4	0.935	INTERGENIC
3L	11640519	3L_11640519_SNP [dm3] 3L_11647419_SNP [dm6]	T	C	1.613e^-4	0.935	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2L	10181534	2L_10181534_SNP [dm3] 2L_10181534_SNP [dm6]	T	C	1.620e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_inv
3R	27068260	3R_27068260_SNP [dm3] 3R_31242538_SNP [dm6]	A	C	1.635e^-4	0.935	INTRON qless
2R	7313128	2R_7313128_SNP [dm3] 2R_11425623_SNP [dm6]	G	T	1.669e^-4	0.935	UPSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_inv
3L	15445931	3L_15445931_SNP [dm3] 3L_15452831_SNP [dm6]	T	A	1.681e^-4	0.935	INTERGENIC
3L	24001926	3L_24001926_SNP [dm3] 3L_24008826_SNP [dm6]	T	A	1.683e^-4	0.935	INTERGENIC
2R	5736792	2R_5736792_SNP [dm3] 2R_9849287_SNP [dm6]	A	G	1.723e^-4	0.935	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2L	6516054	2L_6516054_SNP [dm3] 2L_6516054_SNP [dm6]	T	A	1.723e^-4	0.935	INTRON CG31637
3L	18151652	3L_18151652_SNP [dm3] 3L_18158552_SNP [dm6]	G	T	1.741e^-4	0.935	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3227919	2R_3227919_SNP [dm3] 2R_7340414_SNP [dm6]	G	A	1.744e^-4	0.935	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2L	22084355	2L_22084355_SNP [dm3] 2L_22084355_SNP [dm6]	G	A	1.749e^-4	0.935	INTERGENIC
X	3645953	X_3645953_SNP [dm3] X_3751920_SNP [dm6]	T	C	1.751e^-4	0.935	INTRON tlk
3L	16807505	3L_16807505_SNP [dm3] 3L_16814405_SNP [dm6]	G	A	1.753e^-4	0.935	INTRON nudC & 1 other
2L	2514408	2L_2514408_SNP [dm3] 2L_2514408_SNP [dm6]	T	C	1.759e^-4	0.935	INTERGENIC
3L	16010664	3L_16010664_SNP [dm3] 3L_16017564_SNP [dm6]	C	T	1.760e^-4	0.935	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11679495	3L_11679495_SNP [dm3] 3L_11686395_SNP [dm6]	A	G	1.768e^-4	0.935	INTRON Sug
3L	11680181	3L_11680181_SNP [dm3] 3L_11687081_SNP [dm6]	A	T	1.768e^-4	0.935	NON_SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11680356	3L_11680356_SNP [dm3] 3L_11687256_SNP [dm6]	G	A	1.768e^-4	0.935	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA
3L	11680389	3L_11680389_SNP [dm3] 3L_11687289_SNP [dm6]	G	A	1.768e^-4	0.935	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA
3L	11683283	3L_11683283_SNP [dm3] 3L_11690183_SNP [dm6]	T	C	1.768e^-4	0.935	DOWNSTREAM Sug INTRON Pallidin
2L	4698054	2L_4698054_SNP [dm3] 2L_4698054_SNP [dm6]	T	C	1.787e^-4	0.935	INTRON CG34351
3L	18151768	3L_18151768_SNP [dm3] 3L_18158668_SNP [dm6]	G	A	1.796e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20020456	X_20020456_SNP [dm3] X_20126423_SNP [dm6]	C	A	1.799e^-4	0.935	INTERGENIC
X	1889576	X_1889576_SNP [dm3] X_1995543_SNP [dm6]	A	G	1.807e^-4	0.935	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
3L	11756229	3L_11756229_SNP [dm3] 3L_11763129_SNP [dm6]	C	T	1.816e^-4	0.935	INTRON CG6024
X	12154718	X_12154718_SNP [dm3] X_12260685_SNP [dm6]	G	A	1.823e^-4	0.935	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10558083	3L_10558083_SNP [dm3] 3L_10564983_SNP [dm6]	G	C	1.835e^-4	0.935	INTRON A2bp1
X	17847785	X_17847785_SNP [dm3] X_17953752_SNP [dm6]	T	A	1.839e^-4	0.935	INTRON Sh
X	9227822	X_9227822_SNP [dm3] X_9333789_SNP [dm6]	G	A	1.840e^-4	0.935	INTRON CG34449
2R	10924315	2R_10924315_SNP [dm3] 2R_15036810_SNP [dm6]	G	A	1.846e^-4	0.935	INTRON hbs	TF binding site mE1_TFBS_chinmo
2L	8144986	2L_8144986_SNP [dm3] 2L_8144986_SNP [dm6]	G	A	1.847e^-4	0.935	UPSTREAM CG42762 & 1 other INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9642285	3R_9642285_SNP [dm3] 3R_13816563_SNP [dm6]	C	G	1.869e^-4	0.935	DOWNSTREAM CR43641 EXON CR43642	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3215940	2R_3215940_SNP [dm3] 2R_7328435_SNP [dm6]	T	G	1.882e^-4	0.935	INTRON CR45129 & 1 other
3L	5345890	3L_5345890_SNP [dm3] 3L_5352790_SNP [dm6]	A	G	1.885e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16093251	2R_16093251_SNP [dm3] 2R_20205746_SNP [dm6]	G	A	1.886e^-4	0.935	INTERGENIC
2R	16093261	2R_16093261_SNP [dm3] 2R_20205756_SNP [dm6]	G	A	1.886e^-4	0.935	INTERGENIC
2R	16093268	2R_16093268_SNP [dm3] 2R_20205763_SNP [dm6]	G	T	1.886e^-4	0.935	INTERGENIC
2R	16093269	2R_16093269_SNP [dm3] 2R_20205764_SNP [dm6]	C	A	1.886e^-4	0.935	INTERGENIC
2L	7595142	2L_7595142_SNP [dm3] 2L_7595142_SNP [dm6]	A	T	1.929e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18116410	3L_18116410_SNP [dm3] 3L_18123310_SNP [dm6]	C	T	1.936e^-4	0.935	INTERGENIC
2R	12399944	2R_12399944_SNP [dm3] 2R_16512439_SNP [dm6]	A	T	1.953e^-4	0.935	INTRON Sema-2a
X	18878058	X_18878058_SNP [dm3] X_18984025_SNP [dm6]	G	T	1.959e^-4	0.935	INTRON CG43759
3L	3264891	3L_3264891_SNP [dm3] 3L_3264891_SNP [dm6]	C	T	1.963e^-4	0.935	INTRON ckd
3L	23194283	3L_23194283_DEL [dm3] 3L_23201183_DEL [dm6]	CAT	C	1.973e^-4	0.935	INTERGENIC	transposable element FlyBase
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	1.975e^-4	0.935	DOWNSTREAM Orc6 INTRON CG1667
3L	12062279	3L_12062279_SNP [dm3] 3L_12069179_SNP [dm6]	G	A	1.977e^-4	0.935	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	18092675	3L_18092675_SNP [dm3] 3L_18099575_SNP [dm6]	G	T	1.994e^-4	0.935	INTRON CG13698
3L	4938256	3L_4938256_DEL [dm3] 3L_4938256_DEL [dm6]	TTA	T	1.997e^-4	0.935	UTR_3_PRIME Con
3R	11511169	3R_11511169_SNP [dm3] 3R_15685447_SNP [dm6]	A	G	2.010e^-4	0.935	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	12665457	2R_12665457_SNP [dm3] 2R_16777952_SNP [dm6]	C	A	2.019e^-4	0.935	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12665458	2R_12665458_SNP [dm3] 2R_16777953_SNP [dm6]	T	C	2.019e^-4	0.935	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15942281	2L_15942281_SNP [dm3] 2L_15942281_SNP [dm6]	A	G	2.034e^-4	0.935	SYNONYMOUS_CODING CG12448 INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
2L	755530	2L_755530_INS [dm3] 2L_755530_INS [dm6]	T	TTTAATTTATTATTT...	2.053e^-4	0.935	INTRON GABA-B-R3
3L	9552228	3L_9552228_SNP [dm3] 3L_9559128_SNP [dm6]	A	G	2.065e^-4	0.935	INTRON CG42673
3L	7431963	3L_7431963_SNP [dm3] 3L_7438863_SNP [dm6]	C	A	2.066e^-4	0.935	SYNONYMOUS_CODING sphinx1 DOWNSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_inv
3L	15378724	3L_15378724_DEL [dm3] 3L_15385624_DEL [dm6]	TTTTGAAGCCT...	T	2.070e^-4	0.935	INTERGENIC
2R	9659464	2R_9659464_SNP [dm3] 2R_13771959_SNP [dm6]	G	C	2.078e^-4	0.935	INTRON Cpr50Ca
2L	11490744	2L_11490744_SNP [dm3] 2L_11490744_SNP [dm6]	G	A	2.093e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6725841	2R_6725841_SNP [dm3] 2R_10838336_SNP [dm6]	A	G	2.113e^-4	0.935	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6157479	2R_6157479_SNP [dm3] 2R_10269974_SNP [dm6]	A	G	2.120e^-4	0.935	DOWNSTREAM CG12910 INTRON CAP
3L	12093643	3L_12093643_SNP [dm3] 3L_12100543_SNP [dm6]	T	C	2.128e^-4	0.935	INTERGENIC
3L	23942634	3L_23942634_SNP [dm3] 3L_23949534_SNP [dm6]	T	A	2.137e^-4	0.935	INTRON CG40470
3R	23569696	3R_23569696_SNP [dm3] 3R_27743974_SNP [dm6]	A	T	2.143e^-4	0.935	NON_SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1389087	3L_1389087_SNP [dm3] 3L_1389087_SNP [dm6]	C	T	2.144e^-4	0.935	INTRON Ptp61F
X	5749861	X_5749861_DEL [dm3] X_5855828_DEL [dm6]	TT	T	2.146e^-4	0.935	INTERGENIC
3R	8474331	3R_8474331_SNP [dm3] 3R_12648609_SNP [dm6]	C	T	2.190e^-4	0.935	INTRON Dtg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11006717	3R_11006717_SNP [dm3] 3R_15180995_SNP [dm6]	G	A	2.223e^-4	0.935	UPSTREAM Mf INTRON Gyc88E & 1 other
3L	18151753	3L_18151753_SNP [dm3] 3L_18158653_SNP [dm6]	A	T	2.237e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7632932	2L_7632932_SNP [dm3] 2L_7632932_SNP [dm6]	A	T	2.242e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18151706	3L_18151706_SNP [dm3] 3L_18158606_SNP [dm6]	G	T	2.242e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6904698	2L_6904698_SNP [dm3] 2L_6904698_SNP [dm6]	G	A	2.251e^-4	0.935	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15090401	3L_15090401_SNP [dm3] 3L_15097301_SNP [dm6]	G	C	2.253e^-4	0.935	SYNONYMOUS_CODING Aats-gly UPSTREAM CTPsyn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4936033	3L_4936033_SNP [dm3] 3L_4936033_SNP [dm6]	C	T	2.306e^-4	0.935	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4936043	3L_4936043_SNP [dm3] 3L_4936043_SNP [dm6]	T	A	2.306e^-4	0.935	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16963440	3L_16963440_SNP [dm3] 3L_16970340_SNP [dm6]	T	C	2.310e^-4	0.935	START_GAINED Exn UTR_5_PRIME Exn
3L	16665799	3L_16665799_SNP [dm3] 3L_16672699_SNP [dm6]	T	C	2.324e^-4	0.935	INTRON zetaCOP
2R	8905431	2R_8905431_SNP [dm3] 2R_13017926_SNP [dm6]	A	T	2.334e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	4302610	X_4302610_SNP [dm3] X_4408577_SNP [dm6]	C	G	2.336e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19175493	3L_19175493_SNP [dm3] 3L_19182393_SNP [dm6]	G	A	2.339e^-4	0.935	INTRON fz2	TF binding site mE1_TFBS_cad
3R	14301795	3R_14301795_SNP [dm3] 3R_18476073_SNP [dm6]	T	A	2.341e^-4	0.935	INTRON fru
2R	8649145	2R_8649145_SNP [dm3] 2R_12761640_SNP [dm6]	C	T	2.382e^-4	0.935	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15011325	3L_15011325_SNP [dm3] 3L_15018225_SNP [dm6]	T	C	2.390e^-4	0.935	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7977706	3L_7977706_SNP [dm3] 3L_7984606_SNP [dm6]	T	C	2.412e^-4	0.935	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	17203977	3L_17203977_SNP [dm3] 3L_17210877_SNP [dm6]	G	A	2.415e^-4	0.935	INTRON Rbp6
3L	16665769	3L_16665769_SNP [dm3] 3L_16672669_SNP [dm6]	C	A	2.438e^-4	0.935	INTRON zetaCOP
2L	3743532	2L_3743532_SNP [dm3] 2L_3743532_SNP [dm6]	G	T	2.450e^-4	0.935	INTRON CG10019
3L	18151703	3L_18151703_SNP [dm3] 3L_18158603_SNP [dm6]	A	G	2.463e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15090392	3L_15090392_SNP [dm3] 3L_15097292_SNP [dm6]	G	T	2.476e^-4	0.935	SYNONYMOUS_CODING Aats-gly UPSTREAM CTPsyn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7773943	2L_7773943_SNP [dm3] 2L_7773943_SNP [dm6]	T	C	2.481e^-4	0.935	INTRON CG7191
2R	15765518	2R_15765518_DEL [dm3] 2R_19878013_DEL [dm6]	TT	T	2.482e^-4	0.935	DOWNSTREAM CG13872 INTERGENIC
2L	6467559	2L_6467559_SNP [dm3] 2L_6467559_SNP [dm6]	T	C	2.497e^-4	0.935	NON_SYNONYMOUS_CODING CG9531 DOWNSTREAM mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10512925	3R_10512925_SNP [dm3] 3R_14687203_SNP [dm6]	C	G	2.497e^-4	0.935	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6649799	3L_6649799_SNP [dm3] 3L_6656699_SNP [dm6]	T	C	2.508e^-4	0.935	INTERGENIC
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	2.515e^-4	0.935	INTRON MYPT-75D
2L	21823673	2L_21823673_SNP [dm3] 2L_21823673_SNP [dm6]	A	G	2.535e^-4	0.935	INTERGENIC
2L	19379407	2L_19379407_DEL [dm3] 2L_19379407_DEL [dm6]	CTCATAC	C	2.540e^-4	0.935	INTERGENIC
2R	7221289	2R_7221289_SNP [dm3] 2R_11333784_SNP [dm6]	G	T	2.540e^-4	0.935	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	443304	3R_443304_DEL [dm3] 3R_4617582_DEL [dm6]	GGTCAACATGG...	G	2.544e^-4	0.935	INTRON 5-HT2A
3R	14301747	3R_14301747_SNP [dm3] 3R_18476025_SNP [dm6]	T	C	2.560e^-4	0.935	INTRON fru
X	9273155	X_9273155_SNP [dm3] X_9379122_SNP [dm6]	A	G	2.571e^-4	0.935	INTRON mgl
3L	18151797	3L_18151797_SNP [dm3] 3L_18158697_SNP [dm6]	G	C	2.597e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16489369	2L_16489369_SNP [dm3] 2L_16489369_SNP [dm6]	T	A	2.630e^-4	0.935	SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	15021856	2L_15021856_SNP [dm3] 2L_15021856_SNP [dm6]	C	T	2.654e^-4	0.935	INTRON GABA-B-R1
3L	2940304	3L_2940304_SNP [dm3] 3L_2940304_SNP [dm6]	T	C	2.666e^-4	0.935	INTRON Shab
3L	2940495	3L_2940495_SNP [dm3] 3L_2940495_SNP [dm6]	G	A	2.666e^-4	0.935	INTRON Shab
3L	15911562	3L_15911562_SNP [dm3] 3L_15918462_SNP [dm6]	G	A	2.692e^-4	0.935	INTRON sff
3L	15911563	3L_15911563_SNP [dm3] 3L_15918463_SNP [dm6]	T	G	2.692e^-4	0.935	INTRON sff
3R	21977844	3R_21977844_SNP [dm3] 3R_26152122_SNP [dm6]	C	T	2.698e^-4	0.935	INTERGENIC
2L	12238833	2L_12238833_SNP [dm3] 2L_12238833_SNP [dm6]	T	A	2.704e^-4	0.935	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3743471	2L_3743471_SNP [dm3] 2L_3743471_SNP [dm6]	T	A	2.740e^-4	0.935	INTRON CG10019
2L	3743494	2L_3743494_SNP [dm3] 2L_3743494_SNP [dm6]	G	A	2.740e^-4	0.935	INTRON CG10019
2L	3743556	2L_3743556_DEL [dm3] 2L_3743556_DEL [dm6]	TA	T	2.740e^-4	0.935	INTRON CG10019
2L	3743564	2L_3743564_SNP [dm3] 2L_3743564_SNP [dm6]	T	A	2.740e^-4	0.935	INTRON CG10019
2L	3743568	2L_3743568_SNP [dm3] 2L_3743568_SNP [dm6]	T	A	2.740e^-4	0.935	INTRON CG10019
2L	3743569	2L_3743569_SNP [dm3] 2L_3743569_SNP [dm6]	T	A	2.740e^-4	0.935	INTRON CG10019
2R	5734620	2R_5734620_SNP [dm3] 2R_9847115_SNP [dm6]	A	G	2.766e^-4	0.935	NON_SYNONYMOUS_CODING Prosalpha7 UPSTREAM Orc6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14176682	3R_14176682_SNP [dm3] 3R_18350960_SNP [dm6]	G	C	2.768e^-4	0.935	INTRON CG15803
X	4595461	X_4595461_SNP [dm3] X_4701428_SNP [dm6]	C	T	2.769e^-4	0.935	UTR_3_PRIME ctp UPSTREAM l_1_G0334	TF binding site BDTNP1_TFBS_dl
X	14260595	X_14260595_SNP [dm3] X_14366562_SNP [dm6]	A	C	2.770e^-4	0.935	INTRON dpr8
X	14260598	X_14260598_SNP [dm3] X_14366565_SNP [dm6]	G	C	2.770e^-4	0.935	INTRON dpr8
X	14260602	X_14260602_SNP [dm3] X_14366569_SNP [dm6]	G	A	2.770e^-4	0.935	INTRON dpr8
3L	10019106	3L_10019106_SNP [dm3] 3L_10026006_SNP [dm6]	G	A	2.786e^-4	0.935	INTRON dpr6
3L	10019134	3L_10019134_SNP [dm3] 3L_10026034_SNP [dm6]	A	C	2.786e^-4	0.935	INTRON dpr6
3L	10019843	3L_10019843_SNP [dm3] 3L_10026743_SNP [dm6]	G	A	2.786e^-4	0.935	INTRON dpr6
2R	15107724	2R_15107724_SNP [dm3] 2R_19220219_SNP [dm6]	C	A	2.786e^-4	0.935	INTRON hppy
2R	15107727	2R_15107727_SNP [dm3] 2R_19220222_SNP [dm6]	G	A	2.786e^-4	0.935	INTRON hppy
2R	10535025	2R_10535025_SNP [dm3] 2R_14647520_SNP [dm6]	G	T	2.788e^-4	0.935	INTERGENIC
X	1890180	X_1890180_SNP [dm3] X_1996147_SNP [dm6]	G	A	2.796e^-4	0.935	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	1889657	X_1889657_SNP [dm3] X_1995624_SNP [dm6]	T	C	2.837e^-4	0.935	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
3R	15028396	3R_15028396_SNP [dm3] 3R_19202674_SNP [dm6]	A	G	2.846e^-4	0.935	INTERGENIC
2L	2715865	2L_2715865_SNP [dm3] 2L_2715865_SNP [dm6]	A	T	2.861e^-4	0.935	INTRON CG31690
X	8775660	X_8775660_SNP [dm3] X_8881627_SNP [dm6]	C	G	2.866e^-4	0.935	START_GAINED Moe UTR_5_PRIME Moe INTRON Moe
2R	16680567	2R_16680567_SNP [dm3] 2R_20793062_SNP [dm6]	A	C	2.871e^-4	0.935	SYNONYMOUS_CODING CG15225 UPSTREAM CG43668
3L	3937097	3L_3937097_SNP [dm3] 3L_3937097_SNP [dm6]	A	G	2.872e^-4	0.935	SYNONYMOUS_CODING CG10866	TF binding site mE1_TFBS_cad
2R	15960301	2R_15960301_SNP [dm3] 2R_20072796_SNP [dm6]	T	G	2.879e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10793008	2R_10793008_DEL [dm3] 2R_14905503_DEL [dm6]	AA	A	2.889e^-4	0.935	INTRON CG10249	TF binding site mE1_TFBS_chinmo
3L	19293368	3L_19293368_SNP [dm3] 3L_19300268_SNP [dm6]	A	T	2.908e^-4	0.935	UTR_3_PRIME pip DOWNSTREAM pip INTRON pip
2R	12648250	2R_12648250_SNP [dm3] 2R_16760745_SNP [dm6]	A	G	2.909e^-4	0.935	INTRON unc-104
3R	15530197	3R_15530197_SNP [dm3] 3R_19704475_SNP [dm6]	T	C	2.922e^-4	0.935	INTERGENIC
X	9844528	X_9844528_SNP [dm3] X_9950495_SNP [dm6]	T	A	2.923e^-4	0.935	INTERGENIC
3L	2939422	3L_2939422_SNP [dm3] 3L_2939422_SNP [dm6]	G	T	2.924e^-4	0.935	INTRON Shab
2L	2692031	2L_2692031_SNP [dm3] 2L_2692031_SNP [dm6]	C	T	2.928e^-4	0.935	INTRON CG31690
3L	11597749	3L_11597749_SNP [dm3] 3L_11604649_SNP [dm6]	G	A	2.940e^-4	0.935	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
X	4197031	X_4197031_SNP [dm3] X_4302998_SNP [dm6]	C	T	2.961e^-4	0.935	UPSTREAM CG12692 INTERGENIC
X	4302595	X_4302595_SNP [dm3] X_4408562_SNP [dm6]	T	A	3.042e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10839664	X_10839664_SNP [dm3] X_10945631_SNP [dm6]	C	T	3.057e^-4	0.935	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	8747286	2L_8747286_SNP [dm3] 2L_8747286_SNP [dm6]	A	G	3.057e^-4	0.935	INTERGENIC
X	5890452	X_5890452_SNP [dm3] X_5996419_SNP [dm6]	C	T	3.086e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8145281	2L_8145281_SNP [dm3] 2L_8145281_SNP [dm6]	C	T	3.088e^-4	0.935	UPSTREAM CG43394 & 1 other INTRON CG8552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21237513	X_21237513_SNP [dm3] X_21366486_SNP [dm6]	T	C	3.092e^-4	0.935	INTRON waw & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11172429	2L_11172429_SNP [dm3] 2L_11172429_SNP [dm6]	T	G	3.093e^-4	0.935	UPSTREAM Vm32E INTRON Ca-beta
3R	14651586	3R_14651586_INS [dm3] 3R_18825864_INS [dm6]	T	TT	3.100e^-4	0.935	INTRON CG18208
2R	4965232	2R_4965232_SNP [dm3] 2R_9077727_SNP [dm6]	G	C	3.112e^-4	0.935	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14499179	3R_14499179_SNP [dm3] 3R_18673457_SNP [dm6]	G	A	3.115e^-4	0.935	SYNONYMOUS_CODING CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18048474	X_18048474_DEL [dm3] X_18154441_DEL [dm6]	TTG	T	3.118e^-4	0.935	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6151282	2R_6151282_SNP [dm3] 2R_10263777_SNP [dm6]	G	A	3.120e^-4	0.935	EXON CR30009
2L	11223839	2L_11223839_SNP [dm3] 2L_11223839_SNP [dm6]	T	C	3.128e^-4	0.935	INTRON ab	TF binding site BDTNP1_TFBS_dl
3L	8121052	3L_8121052_SNP [dm3] 3L_8127952_SNP [dm6]	G	C	3.134e^-4	0.935	UTR_5_PRIME CdsA UPSTREAM CdsA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3937175	3L_3937175_SNP [dm3] 3L_3937175_SNP [dm6]	T	C	3.148e^-4	0.935	SYNONYMOUS_CODING CG10866	TF binding site mE1_TFBS_cad
2L	16382850	2L_16382850_SNP [dm3] 2L_16382850_SNP [dm6]	G	A	3.152e^-4	0.935	INTERGENIC
2R	15421611	2R_15421611_SNP [dm3] 2R_19534106_SNP [dm6]	C	A	3.157e^-4	0.935	INTRON sm
2L	16484958	2L_16484958_SNP [dm3] 2L_16484958_SNP [dm6]	T	C	3.177e^-4	0.935	INTRON dac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18656740	3L_18656740_INS [dm3] 3L_18663640_INS [dm6]	A	AT	3.186e^-4	0.935	INTRON MYPT-75D
2R	5738945	2R_5738945_SNP [dm3] 2R_9851440_SNP [dm6]	C	A	3.215e^-4	0.935	DOWNSTREAM CG1671 INTRON CG1516
3R	17114472	3R_17114472_INS [dm3] 3R_21288750_INS [dm6]	T	TCCCGAAT	3.220e^-4	0.935	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16438745	2R_16438745_SNP [dm3] 2R_20551240_SNP [dm6]	G	A	3.235e^-4	0.935	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	11536472	3R_11536472_SNP [dm3] 3R_15710750_SNP [dm6]	G	A	3.240e^-4	0.935	INTERGENIC
2L	8721563	2L_8721563_SNP [dm3] 2L_8721563_SNP [dm6]	G	C	3.248e^-4	0.935	INTRON raw
2R	6151669	2R_6151669_SNP [dm3] 2R_10264164_SNP [dm6]	T	G	3.252e^-4	0.935	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	16844603	2R_16844603_SNP [dm3] 2R_20957098_SNP [dm6]	T	A	3.254e^-4	0.935	INTRON hbn	TF binding site BDTNP1_TFBS_prd
3L	13934714	3L_13934714_SNP [dm3] 3L_13941614_SNP [dm6]	T	A	3.255e^-4	0.935	INTRON CG32137	TF binding site mE1_TFBS_inv
2L	16712677	2L_16712677_SNP [dm3] 2L_16712677_SNP [dm6]	T	C	3.259e^-4	0.935	INTRON CG31808
2R	18117881	2R_18117881_MNP [dm3] 2R_22230376_MNP [dm6]	AGG	CAC	3.267e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9570377	2L_9570377_INS [dm3] 2L_9570377_INS [dm6]	C	CC	3.282e^-4	0.935	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14976616	2R_14976616_SNP [dm3] 2R_19089111_SNP [dm6]	A	C	3.283e^-4	0.935	INTRON 5-HT1A
2R	14976624	2R_14976624_DEL [dm3] 2R_19089119_DEL [dm6]	ATA	A	3.283e^-4	0.935	INTRON 5-HT1A
2R	14976661	2R_14976661_SNP [dm3] 2R_19089156_SNP [dm6]	C	T	3.283e^-4	0.935	INTRON 5-HT1A
2R	14976694	2R_14976694_SNP [dm3] 2R_19089189_SNP [dm6]	C	A	3.283e^-4	0.935	INTRON 5-HT1A
3R	25052808	3R_25052808_SNP [dm3] 3R_29227086_SNP [dm6]	A	G	3.308e^-4	0.935	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
X	11112498	X_11112498_SNP [dm3] X_11218465_SNP [dm6]	A	G	3.311e^-4	0.935	DOWNSTREAM CG44422 INTERGENIC
X	14260612	X_14260612_DEL [dm3] X_14366579_DEL [dm6]	TGA	T	3.320e^-4	0.935	INTRON dpr8
X	14260620	X_14260620_SNP [dm3] X_14366587_SNP [dm6]	A	T	3.320e^-4	0.935	INTRON dpr8
2L	16500854	2L_16500854_SNP [dm3] 2L_16500854_SNP [dm6]	T	C	3.322e^-4	0.935	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	3.324e^-4	0.935	INTRON ome	regulatory region REDfly_CRMs
3L	9034573	3L_9034573_SNP [dm3] 3L_9041473_SNP [dm6]	T	A	3.348e^-4	0.935	UTR_5_PRIME Doc1 UPSTREAM Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6009028	2R_6009028_SNP [dm3] 2R_10121523_SNP [dm6]	G	A	3.351e^-4	0.935	UTR_3_PRIME Ccs DOWNSTREAM Ccs & 1 other
3L	11681160	3L_11681160_SNP [dm3] 3L_11688060_SNP [dm6]	G	A	3.358e^-4	0.935	SYNONYMOUS_CODING Sug
X	459967	X_459967_DEL [dm3] X_565934_DEL [dm6]	TA	T	3.395e^-4	0.935	INTRON Appl
3L	10558039	3L_10558039_SNP [dm3] 3L_10564939_SNP [dm6]	C	T	3.461e^-4	0.935	INTRON A2bp1
3L	10558045	3L_10558045_SNP [dm3] 3L_10564945_SNP [dm6]	C	T	3.461e^-4	0.935	INTRON A2bp1
3L	10189582	3L_10189582_SNP [dm3] 3L_10196482_SNP [dm6]	G	T	3.466e^-4	0.935	INTRON ect	TF binding site mE1_TFBS_chinmo
3L	22973684	3L_22973684_SNP [dm3] 3L_22980584_SNP [dm6]	T	C	3.481e^-4	0.935	INTERGENIC
2L	6775707	2L_6775707_SNP [dm3] 2L_6775707_SNP [dm6]	G	A	3.482e^-4	0.935	UPSTREAM CG17378 INTRON CG17378
2L	6775715	2L_6775715_SNP [dm3] 2L_6775715_SNP [dm6]	A	C	3.482e^-4	0.935	UTR_5_PRIME CG17378 INTRON CG17378
2L	6775725	2L_6775725_SNP [dm3] 2L_6775725_SNP [dm6]	G	A	3.482e^-4	0.935	UTR_5_PRIME CG17378 INTRON CG17378
2R	5085362	2R_5085362_SNP [dm3] 2R_9197857_SNP [dm6]	G	A	3.496e^-4	0.935	INTRON unpg
3R	16241139	3R_16241139_SNP [dm3] 3R_20415417_SNP [dm6]	C	T	3.509e^-4	0.935	INTRON Gfrl
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	3.539e^-4	0.935	INTRON Mef2
3R	18532295	3R_18532295_SNP [dm3] 3R_22706573_SNP [dm6]	C	T	3.545e^-4	0.935	SYNONYMOUS_CODING CG13842
2R	6228629	2R_6228629_SNP [dm3] 2R_10341124_SNP [dm6]	G	A	3.563e^-4	0.935	INTRON CG42732
3L	10517236	3L_10517236_SNP [dm3] 3L_10524136_SNP [dm6]	G	A	3.571e^-4	0.935	INTRON A2bp1
3L	10517270	3L_10517270_SNP [dm3] 3L_10524170_SNP [dm6]	C	A	3.571e^-4	0.935	INTRON A2bp1
2R	4614154	2R_4614154_SNP [dm3] 2R_8726649_SNP [dm6]	A	C	3.574e^-4	0.935	SYNONYMOUS_CODING gcl
2R	4619150	2R_4619150_SNP [dm3] 2R_8731645_SNP [dm6]	C	A	3.574e^-4	0.935	INTRON stmA	TF binding site mE1_TFBS_sens
2R	4619916	2R_4619916_SNP [dm3] 2R_8732411_SNP [dm6]	A	T	3.574e^-4	0.935	SPLICE_SITE_REGION stmA INTRON stmA	TF binding site mE1_TFBS_sens
2R	4619970	2R_4619970_SNP [dm3] 2R_8732465_SNP [dm6]	C	T	3.574e^-4	0.935	SPLICE_SITE_REGION stmA SYNONYMOUS_CODING stmA	TF binding site mE1_TFBS_sens
2R	7070027	2R_7070027_SNP [dm3] 2R_11182522_SNP [dm6]	T	G	3.577e^-4	0.935	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7070036	2R_7070036_SNP [dm3] 2R_11182531_SNP [dm6]	G	C	3.577e^-4	0.935	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11536447	3R_11536447_SNP [dm3] 3R_15710725_SNP [dm6]	G	A	3.592e^-4	0.935	INTERGENIC
2R	12106225	2R_12106225_SNP [dm3] 2R_16218720_SNP [dm6]	A	C	3.596e^-4	0.935	UPSTREAM tRNA:CR30239 DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8027078	2L_8027078_SNP [dm3] 2L_8027078_SNP [dm6]	T	A	3.627e^-4	0.935	SYNONYMOUS_CODING CG7367 DOWNSTREAM Tg
2L	6955767	2L_6955767_SNP [dm3] 2L_6955767_SNP [dm6]	T	G	3.632e^-4	0.935	SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
2R	5978670	2R_5978670_SNP [dm3] 2R_10091165_SNP [dm6]	G	A	3.656e^-4	0.935	INTRON CG2269
2R	16429684	2R_16429684_SNP [dm3] 2R_20542179_SNP [dm6]	C	T	3.677e^-4	0.935	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15680879	3R_15680879_SNP [dm3] 3R_19855157_SNP [dm6]	A	G	3.684e^-4	0.935	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
X	7580446	X_7580446_SNP [dm3] X_7686413_SNP [dm6]	C	T	3.692e^-4	0.935	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8323993	2L_8323993_SNP [dm3] 2L_8323993_SNP [dm6]	G	T	3.693e^-4	0.935	INTRON CG7781
3L	3523369	3L_3523369_SNP [dm3] 3L_3523369_SNP [dm6]	C	T	3.695e^-4	0.935	INTRON Eip63E EXON CR45043
3L	6632417	3L_6632417_SNP [dm3] 3L_6639317_SNP [dm6]	C	G	3.695e^-4	0.935	INTERGENIC
3L	6633089	3L_6633089_SNP [dm3] 3L_6639989_SNP [dm6]	C	T	3.695e^-4	0.935	UPSTREAM CR45238 INTERGENIC
3L	6633090	3L_6633090_DEL [dm3] 3L_6639990_DEL [dm6]	TGAAGCCGCAA...	T	3.695e^-4	0.935	UPSTREAM CR45238 INTERGENIC
3L	6633976	3L_6633976_INS [dm3] 3L_6640876_INS [dm6]	C	CAAAATTACA	3.695e^-4	0.935	UPSTREAM CR45238 INTERGENIC
X	19361885	X_19361885_SNP [dm3] X_19467852_SNP [dm6]	C	G	3.709e^-4	0.935	INTRON kek5
3L	14709834	3L_14709834_SNP [dm3] 3L_14716734_SNP [dm6]	G	C	3.710e^-4	0.935	INTRON ome	regulatory region REDfly_CRMs
X	9228260	X_9228260_SNP [dm3] X_9334227_SNP [dm6]	G	A	3.713e^-4	0.935	INTRON CG34449
2R	8898270	2R_8898270_SNP [dm3] 2R_13010765_SNP [dm6]	A	T	3.716e^-4	0.935	INTERGENIC
2R	8898273	2R_8898273_SNP [dm3] 2R_13010768_SNP [dm6]	G	A	3.716e^-4	0.935	INTERGENIC
3L	19301530	3L_19301530_SNP [dm3] 3L_19308430_SNP [dm6]	A	C	3.728e^-4	0.935	DOWNSTREAM pip INTRON pip
2R	3075302	2R_3075302_SNP [dm3] 2R_7187797_SNP [dm6]	G	A	3.732e^-4	0.935	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens
3R	18532379	3R_18532379_SNP [dm3] 3R_22706657_SNP [dm6]	T	C	3.752e^-4	0.935	SYNONYMOUS_CODING CG13842
3R	18532400	3R_18532400_SNP [dm3] 3R_22706678_SNP [dm6]	G	A	3.752e^-4	0.935	SYNONYMOUS_CODING CG13842
3R	15084379	3R_15084379_SNP [dm3] 3R_19258657_SNP [dm6]	C	T	3.782e^-4	0.935	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7640467	2L_7640467_SNP [dm3] 2L_7640467_SNP [dm6]	T	G	3.788e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3486649	3L_3486649_SNP [dm3] 3L_3486649_SNP [dm6]	G	A	3.801e^-4	0.935	INTRON CG42324
2L	16473315	2L_16473315_SNP [dm3] 2L_16473315_SNP [dm6]	T	C	3.820e^-4	0.935	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3L	19123082	3L_19123082_SNP [dm3] 3L_19129982_SNP [dm6]	A	G	3.831e^-4	0.935	UPSTREAM Spn75F INTRON CG14082
2L	2643260	2L_2643260_SNP [dm3] 2L_2643260_SNP [dm6]	C	A	3.840e^-4	0.935	INTERGENIC
3R	14301788	3R_14301788_SNP [dm3] 3R_18476066_SNP [dm6]	C	A	3.863e^-4	0.935	INTRON fru
X	3645813	X_3645813_DEL [dm3] X_3751780_DEL [dm6]	GTACATACAT	G	3.873e^-4	0.935	INTRON tlk
X	4302594	X_4302594_SNP [dm3] X_4408561_SNP [dm6]	G	A	3.875e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6119545	2R_6119545_SNP [dm3] 2R_10232040_SNP [dm6]	A	G	3.876e^-4	0.935	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	6119550	2R_6119550_SNP [dm3] 2R_10232045_SNP [dm6]	C	T	3.876e^-4	0.935	NON_SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	12535216	2L_12535216_SNP [dm3] 2L_12535216_SNP [dm6]	A	T	3.882e^-4	0.935	INTRON bun
3L	16665789	3L_16665789_SNP [dm3] 3L_16672689_SNP [dm6]	A	T	3.890e^-4	0.935	INTRON zetaCOP
X	3182120	X_3182120_DEL [dm3] X_3288087_DEL [dm6]	TAGT	T	3.906e^-4	0.935	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	6084691	2R_6084691_SNP [dm3] 2R_10197186_SNP [dm6]	G	T	3.915e^-4	0.935	UTR_3_PRIME CG34221 DOWNSTREAM CG34221	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15613740	3R_15613740_SNP [dm3] 3R_19788018_SNP [dm6]	A	G	3.921e^-4	0.935	INTERGENIC
3R	9864419	3R_9864419_SNP [dm3] 3R_14038697_SNP [dm6]	C	T	3.941e^-4	0.935	INTERGENIC
X	340279	X_340279_DEL [dm3] X_446246_DEL [dm6]	CGTT	C	3.951e^-4	0.935	INTRON CG32816
2L	7765989	2L_7765989_SNP [dm3] 2L_7765989_SNP [dm6]	C	A	3.964e^-4	0.935	DOWNSTREAM CG7196 INTERGENIC
2L	8958156	2L_8958156_SNP [dm3] 2L_8958156_SNP [dm6]	G	T	3.999e^-4	0.935	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4245731	2L_4245731_SNP [dm3] 2L_4245731_SNP [dm6]	T	C	4.018e^-4	0.935	DOWNSTREAM CR44059 INTERGENIC
2R	20447413	2R_20447413_SNP [dm3] 2R_24559890_SNP [dm6]	A	G	4.034e^-4	0.935	SYNONYMOUS_CODING Nurf-38 DOWNSTREAM ITP	TF binding site mE1_TFBS_sens
2L	3238540	2L_3238540_SNP [dm3] 2L_3238540_SNP [dm6]	G	C	4.036e^-4	0.935	INTERGENIC
2R	18204144	2R_18204144_SNP [dm3] 2R_22316639_SNP [dm6]	A	G	4.045e^-4	0.935	DOWNSTREAM CR44758 INTERGENIC
2R	18204145	2R_18204145_SNP [dm3] 2R_22316640_SNP [dm6]	T	A	4.045e^-4	0.935	DOWNSTREAM CR44758 INTERGENIC
2R	11743719	2R_11743719_SNP [dm3] 2R_15856214_SNP [dm6]	T	C	4.056e^-4	0.935	DOWNSTREAM tun INTRON CG12970
2R	19629959	2R_19629959_SNP [dm3] 2R_23742436_SNP [dm6]	C	A	4.061e^-4	0.935	INTRON egl
3L	6632753	3L_6632753_SNP [dm3] 3L_6639653_SNP [dm6]	A	C	4.061e^-4	0.935	INTERGENIC
3R	14372283	3R_14372283_SNP [dm3] 3R_18546561_SNP [dm6]	G	T	4.069e^-4	0.935	UPSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10134550	3L_10134550_SNP [dm3] 3L_10141450_SNP [dm6]	A	C	4.079e^-4	0.935	INTERGENIC
2R	8898290	2R_8898290_SNP [dm3] 2R_13010785_SNP [dm6]	T	G	4.116e^-4	0.935	INTERGENIC
X	17507060	X_17507060_SNP [dm3] X_17613027_SNP [dm6]	G	A	4.134e^-4	0.935	INTERGENIC
3R	11074919	3R_11074919_DEL [dm3] 3R_15249197_DEL [dm6]	AATACAAATA	A	4.143e^-4	0.935	UPSTREAM CG42404 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18476588	2R_18476588_SNP [dm3] 2R_22589083_SNP [dm6]	G	T	4.146e^-4	0.935	INTRON dnr1	TF binding site mE1_TFBS_inv
3L	12101977	3L_12101977_SNP [dm3] 3L_12108877_SNP [dm6]	G	T	4.149e^-4	0.935	INTERGENIC
3L	12101979	3L_12101979_SNP [dm3] 3L_12108879_SNP [dm6]	A	G	4.149e^-4	0.935	INTERGENIC
3L	12101980	3L_12101980_SNP [dm3] 3L_12108880_SNP [dm6]	G	T	4.149e^-4	0.935	INTERGENIC
3L	12101983	3L_12101983_SNP [dm3] 3L_12108883_SNP [dm6]	G	T	4.149e^-4	0.935	INTERGENIC
3L	18430272	3L_18430272_SNP [dm3] 3L_18437172_SNP [dm6]	A	G	4.150e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9572533	2R_9572533_SNP [dm3] 2R_13685028_SNP [dm6]	G	A	4.151e^-4	0.935	INTRON fas
X	5375073	X_5375073_SNP [dm3] X_5481040_SNP [dm6]	T	A	4.196e^-4	0.935	INTRON SPR
2L	4337282	2L_4337282_SNP [dm3] 2L_4337282_SNP [dm6]	A	T	4.208e^-4	0.935	INTRON Atet	TF binding site BDTNP1_TFBS_da
2R	17348950	2R_17348950_SNP [dm3] 2R_21461445_SNP [dm6]	C	T	4.223e^-4	0.935	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19125342	3L_19125342_SNP [dm3] 3L_19132242_SNP [dm6]	G	T	4.225e^-4	0.935	INTRON CG14082
3L	8833986	3L_8833986_SNP [dm3] 3L_8840886_SNP [dm6]	G	T	4.235e^-4	0.935	INTRON dally	TF binding site mE1_TFBS_HSA
2R	12167571	2R_12167571_SNP [dm3] 2R_16280066_SNP [dm6]	T	A	4.239e^-4	0.935	UTR_5_PRIME CG15704 UPSTREAM CG15705
X	6455613	X_6455613_SNP [dm3] X_6561580_SNP [dm6]	A	T	4.264e^-4	0.935	INTRON CG34417	TF binding site mE1_TFBS_sens
X	6455879	X_6455879_SNP [dm3] X_6561846_SNP [dm6]	T	C	4.264e^-4	0.935	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20626077	2L_20626077_SNP [dm3] 2L_20626077_SNP [dm6]	G	A	4.267e^-4	0.935	EXON CR44909
3R	18691581	3R_18691581_SNP [dm3] 3R_22865859_SNP [dm6]	A	T	4.271e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20596917	2L_20596917_SNP [dm3] 2L_20596917_SNP [dm6]	C	A	4.275e^-4	0.935	INTRON CR44909
3R	11077403	3R_11077403_SNP [dm3] 3R_15251681_SNP [dm6]	A	G	4.286e^-4	0.935	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10248965	2L_10248965_SNP [dm3] 2L_10248965_SNP [dm6]	C	T	4.296e^-4	0.935	INTRON bsk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	18531403	3R_18531403_SNP [dm3] 3R_22705681_SNP [dm6]	G	T	4.309e^-4	0.935	NON_SYNONYMOUS_CODING CG13842
2R	18313182	2R_18313182_SNP [dm3] 2R_22425677_SNP [dm6]	C	T	4.310e^-4	0.935	DOWNSTREAM CG10344 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18740756	2R_18740756_SNP [dm3] 2R_22853233_SNP [dm6]	A	G	4.349e^-4	0.935	SYNONYMOUS_CODING CG13531	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16191884	3R_16191884_SNP [dm3] 3R_20366162_SNP [dm6]	T	G	4.368e^-4	0.935	INTERGENIC
2R	6150847	2R_6150847_SNP [dm3] 2R_10263342_SNP [dm6]	A	T	4.371e^-4	0.935	EXON CR30009	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	11224150	2R_11224150_INS [dm3] 2R_15336645_INS [dm6]	T	TACT	4.371e^-4	0.935	INTRON Hr51	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14273364	2R_14273364_SNP [dm3] 2R_18385859_SNP [dm6]	T	A	4.373e^-4	0.935	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
2R	14273385	2R_14273385_SNP [dm3] 2R_18385880_SNP [dm6]	T	C	4.373e^-4	0.935	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
3L	12538831	3L_12538831_SNP [dm3] 3L_12545731_SNP [dm6]	A	C	4.373e^-4	0.935	INTRON sowah
3R	8513368	3R_8513368_SNP [dm3] 3R_12687646_SNP [dm6]	G	A	4.382e^-4	0.935	INTRON kar	TF binding site mE1_TFBS_chinmo
3R	16860732	3R_16860732_SNP [dm3] 3R_21035010_SNP [dm6]	A	G	4.386e^-4	0.935	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16828257	3R_16828257_SNP [dm3] 3R_21002535_SNP [dm6]	T	G	4.388e^-4	0.935	INTRON Calx
2R	16340507	2R_16340507_SNP [dm3] 2R_20453002_SNP [dm6]	C	T	4.427e^-4	0.935	INTRON CG12484
2R	10834948	2R_10834948_SNP [dm3] 2R_14947443_SNP [dm6]	T	G	4.435e^-4	0.935	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
X	3210272	X_3210272_SNP [dm3] X_3316239_SNP [dm6]	A	T	4.445e^-4	0.935	SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
2R	19601109	2R_19601109_SNP [dm3] 2R_23713586_SNP [dm6]	A	T	4.456e^-4	0.935	UPSTREAM Sesn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8203952	X_8203952_SNP [dm3] X_8309919_SNP [dm6]	C	T	4.458e^-4	0.935	INTRON nAChRalpha3
3R	9604575	3R_9604575_SNP [dm3] 3R_13778853_SNP [dm6]	A	T	4.498e^-4	0.935	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
3R	9604600	3R_9604600_SNP [dm3] 3R_13778878_SNP [dm6]	C	A	4.498e^-4	0.935	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9604613	3R_9604613_DEL [dm3] 3R_13778891_DEL [dm6]	AGCATAACCCTAA...	A	4.498e^-4	0.935	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5737633	2R_5737633_SNP [dm3] 2R_9850128_SNP [dm6]	G	A	4.557e^-4	0.935	NON_SYNONYMOUS_CODING CG1671 DOWNSTREAM CG1516
2R	5737983	2R_5737983_SNP [dm3] 2R_9850478_SNP [dm6]	A	G	4.557e^-4	0.935	SYNONYMOUS_CODING CG1671 DOWNSTREAM CG1516
2R	5738135	2R_5738135_SNP [dm3] 2R_9850630_SNP [dm6]	C	T	4.557e^-4	0.935	UTR_3_PRIME CG1671 DOWNSTREAM CG1516
2R	5738867	2R_5738867_SNP [dm3] 2R_9851362_SNP [dm6]	C	G	4.557e^-4	0.935	SYNONYMOUS_CODING CG1516 DOWNSTREAM CG1671
2R	12672193	2R_12672193_DEL [dm3] 2R_16784688_DEL [dm6]	CAA	GT	4.568e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6705115	X_6705115_DEL [dm3] X_6811082_DEL [dm6]	CCACACGCTAA...	C	4.575e^-4	0.935	INTRON pod1	TF binding site mE1_TFBS_cad
X	3645829	X_3645829_SNP [dm3] X_3751796_SNP [dm6]	T	A	4.598e^-4	0.935	INTRON tlk
X	3645833	X_3645833_SNP [dm3] X_3751800_SNP [dm6]	A	G	4.598e^-4	0.935	INTRON tlk
X	3645835	X_3645835_SNP [dm3] X_3751802_SNP [dm6]	G	A	4.598e^-4	0.935	INTRON tlk
X	3645837	X_3645837_MNP [dm3] X_3751804_MNP [dm6]	TGG	ATA	4.598e^-4	0.935	INTRON tlk
3L	13252493	3L_13252493_SNP [dm3] 3L_13259393_SNP [dm6]	T	C	4.598e^-4	0.935	INTRON caps
X	8003210	X_8003210_SNP [dm3] X_8109177_SNP [dm6]	T	C	4.613e^-4	0.935	INTRON Gclc
3L	12606235	3L_12606235_SNP [dm3] 3L_12613135_SNP [dm6]	G	A	4.615e^-4	0.935	INTRON caup	silencer mE1_HDAC_PRE
2R	5785156	2R_5785156_SNP [dm3] 2R_9897651_SNP [dm6]	T	A	4.628e^-4	0.935	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
2R	3159123	2R_3159123_SNP [dm3] 2R_7271618_SNP [dm6]	C	G	4.631e^-4	0.935	DOWNSTREAM Br140 INTERGENIC
3L	15213540	3L_15213540_SNP [dm3] 3L_15220440_SNP [dm6]	C	A	4.638e^-4	0.935	INTERGENIC
3L	7899210	3L_7899210_INS [dm3] 3L_7906110_INS [dm6]	A	AA	4.652e^-4	0.935	INTRON pbl
2R	4614178	2R_4614178_SNP [dm3] 2R_8726673_SNP [dm6]	C	T	4.681e^-4	0.935	SYNONYMOUS_CODING gcl
3L	6627604	3L_6627604_SNP [dm3] 3L_6634504_SNP [dm6]	G	A	4.689e^-4	0.935	SYNONYMOUS_CODING GluRIA
3L	9324005	3L_9324005_DEL [dm3] 3L_9330905_DEL [dm6]	AA	A	4.691e^-4	0.935	INTERGENIC
2L	14382860	2L_14382860_INS [dm3] 2L_14382860_INS [dm6]	A	AGAT	4.700e^-4	0.935	INTERGENIC
3L	14084389	3L_14084389_SNP [dm3] 3L_14091289_SNP [dm6]	T	G	4.704e^-4	0.935	INTERGENIC
2L	6506797	2L_6506797_SNP [dm3] 2L_6506797_SNP [dm6]	T	G	4.712e^-4	0.935	DOWNSTREAM CR44775 INTRON CG31637
3L	18151701	3L_18151701_SNP [dm3] 3L_18158601_SNP [dm6]	T	G	4.725e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3645830	X_3645830_SNP [dm3] X_3751797_SNP [dm6]	A	G	4.738e^-4	0.935	INTRON tlk
X	3645832	X_3645832_SNP [dm3] X_3751799_SNP [dm6]	A	T	4.738e^-4	0.935	INTRON tlk
2R	10864005	2R_10864005_SNP [dm3] 2R_14976500_SNP [dm6]	C	T	4.753e^-4	0.935	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16844522	2R_16844522_SNP [dm3] 2R_20957017_SNP [dm6]	T	A	4.774e^-4	0.935	INTRON hbn	TF binding site BDTNP1_TFBS_prd
2L	10461340	2L_10461340_SNP [dm3] 2L_10461340_SNP [dm6]	C	T	4.775e^-4	0.935	SPLICE_SITE_REGION LM408 INTRON LM408	TF binding site mE1_TFBS_cad
3L	13532635	3L_13532635_SNP [dm3] 3L_13539535_SNP [dm6]	A	G	4.777e^-4	0.935	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	5849062	2R_5849062_SNP [dm3] 2R_9961557_SNP [dm6]	A	C	4.778e^-4	0.935	SPLICE_SITE_REGION Pal1 INTRON Pal1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12238823	2L_12238823_SNP [dm3] 2L_12238823_SNP [dm6]	T	A	4.784e^-4	0.935	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10441695	2L_10441695_SNP [dm3] 2L_10441695_SNP [dm6]	G	A	4.786e^-4	0.935	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
3L	6627774	3L_6627774_SNP [dm3] 3L_6634674_SNP [dm6]	A	T	4.803e^-4	0.935	INTRON GluRIA
2R	14976417	2R_14976417_SNP [dm3] 2R_19088912_SNP [dm6]	T	A	4.809e^-4	0.935	INTRON 5-HT1A
3L	8796293	3L_8796293_SNP [dm3] 3L_8803193_SNP [dm6]	A	C	4.809e^-4	0.935	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2R	18196385	2R_18196385_SNP [dm3] 2R_22308880_SNP [dm6]	A	C	4.813e^-4	0.935	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13685496	3R_13685496_SNP [dm3] 3R_17859774_SNP [dm6]	C	A	4.819e^-4	0.935	INTRON tinc
3R	3859033	3R_3859033_SNP [dm3] 3R_8033311_SNP [dm6]	C	A	4.826e^-4	0.935	UTR_5_PRIME unc-45 UPSTREAM CG11035	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4936243	2R_4936243_SNP [dm3] 2R_9048738_SNP [dm6]	A	C	4.829e^-4	0.935	INTRON CG13743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2862880	3L_2862880_SNP [dm3] 3L_2862880_SNP [dm6]	A	C	4.835e^-4	0.935	INTRON CG43444
3L	2862965	3L_2862965_SNP [dm3] 3L_2862965_SNP [dm6]	T	A	4.835e^-4	0.935	INTRON CG43444
3R	7743289	3R_7743289_DEL [dm3] 3R_11917567_DEL [dm6]	AAGAGA	A	4.839e^-4	0.935	INTRON Cad87A
2R	13164099	2R_13164099_SNP [dm3] 2R_17276594_SNP [dm6]	G	A	4.843e^-4	0.935	INTRON mbl
3L	11620455	3L_11620455_SNP [dm3] 3L_11627355_SNP [dm6]	T	C	4.858e^-4	0.935	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10441603	2L_10441603_SNP [dm3] 2L_10441603_SNP [dm6]	T	A	4.860e^-4	0.935	UPSTREAM loh DOWNSTREAM CG13142 & 1 other INTERGENIC
2R	19175808	2R_19175808_SNP [dm3] 2R_23288285_SNP [dm6]	T	C	4.871e^-4	0.935	INTERGENIC
2R	9960008	2R_9960008_SNP [dm3] 2R_14072503_SNP [dm6]	G	A	4.875e^-4	0.935	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13886217	3L_13886217_SNP [dm3] 3L_13893117_SNP [dm6]	T	G	4.878e^-4	0.935	INTRON dysc
2R	13206186	2R_13206186_SNP [dm3] 2R_17318681_SNP [dm6]	C	T	4.896e^-4	0.935	INTRON mbl
3L	10557997	3L_10557997_SNP [dm3] 3L_10564897_SNP [dm6]	C	A	4.904e^-4	0.935	INTRON A2bp1
3L	12605508	3L_12605508_SNP [dm3] 3L_12612408_SNP [dm6]	T	C	4.904e^-4	0.935	INTRON caup
3L	15213548	3L_15213548_SNP [dm3] 3L_15220448_SNP [dm6]	A	T	4.935e^-4	0.935	INTERGENIC
X	18020817	X_18020817_SNP [dm3] X_18126784_SNP [dm6]	T	C	4.948e^-4	0.935	INTRON CG32553
3L	5345956	3L_5345956_SNP [dm3] 3L_5352856_SNP [dm6]	C	G	4.950e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345978	3L_5345978_SNP [dm3] 3L_5352878_SNP [dm6]	C	T	4.950e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19173298	2R_19173298_SNP [dm3] 2R_23285775_SNP [dm6]	G	C	4.956e^-4	0.935	UTR_3_PRIME CG13541 DOWNSTREAM CG13541
2R	19175140	2R_19175140_SNP [dm3] 2R_23287617_SNP [dm6]	C	A	4.956e^-4	0.935	INTERGENIC
2R	19175252	2R_19175252_SNP [dm3] 2R_23287729_SNP [dm6]	T	C	4.956e^-4	0.935	INTERGENIC
X	3655920	X_3655920_DEL [dm3] X_3761887_DEL [dm6]	ACCAAAACTG	A	4.960e^-4	0.935	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	12402336	X_12402336_SNP [dm3] X_12508303_SNP [dm6]	T	C	4.962e^-4	0.935	INTRON CG2556	TF binding site BDTNP1_TFBS_da
2R	12665578	2R_12665578_SNP [dm3] 2R_16778073_SNP [dm6]	C	T	4.967e^-4	0.935	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6787079	X_6787079_SNP [dm3] X_6893046_SNP [dm6]	G	T	4.970e^-4	0.935	INTERGENIC
2R	12665572	2R_12665572_SNP [dm3] 2R_16778067_SNP [dm6]	G	A	4.978e^-4	0.935	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6009017	2R_6009017_SNP [dm3] 2R_10121512_SNP [dm6]	G	A	5.001e^-4	0.935	UTR_3_PRIME Ccs DOWNSTREAM Ccs & 1 other
2R	5741562	2R_5741562_SNP [dm3] 2R_9854057_SNP [dm6]	G	C	5.024e^-4	0.935	INTRON CG1516
3R	16828457	3R_16828457_SNP [dm3] 3R_21002735_SNP [dm6]	C	T	5.027e^-4	0.935	INTRON Calx
2L	9409333	2L_9409333_SNP [dm3] 2L_9409333_SNP [dm6]	T	C	5.049e^-4	0.935	INTRON Shawl
2R	12672137	2R_12672137_DEL [dm3] 2R_16784632_DEL [dm6]	ACTG	A	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672159	2R_12672159_DEL [dm3] 2R_16784654_DEL [dm6]	TATTAACATTAC...	T	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672177	2R_12672177_SNP [dm3] 2R_16784672_SNP [dm6]	C	T	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672180	2R_12672180_SNP [dm3] 2R_16784675_SNP [dm6]	T	C	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672190	2R_12672190_SNP [dm3] 2R_16784685_SNP [dm6]	T	C	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672199	2R_12672199_SNP [dm3] 2R_16784694_SNP [dm6]	C	A	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672200	2R_12672200_SNP [dm3] 2R_16784695_SNP [dm6]	G	A	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672202	2R_12672202_SNP [dm3] 2R_16784697_SNP [dm6]	A	T	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672205	2R_12672205_SNP [dm3] 2R_16784700_SNP [dm6]	A	G	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672207	2R_12672207_SNP [dm3] 2R_16784702_SNP [dm6]	T	G	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672211	2R_12672211_SNP [dm3] 2R_16784706_SNP [dm6]	T	A	5.067e^-4	0.935	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8142452	2L_8142452_SNP [dm3] 2L_8142452_SNP [dm6]	G	A	5.098e^-4	0.935	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
3L	11675774	3L_11675774_SNP [dm3] 3L_11682674_SNP [dm6]	G	A	5.117e^-4	0.935	SYNONYMOUS_CODING TfIIEalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11676616	3L_11676616_SNP [dm3] 3L_11683516_SNP [dm6]	G	A	5.117e^-4	0.935	SYNONYMOUS_CODING TfIIEalpha UPSTREAM Sug	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11679757	3L_11679757_SNP [dm3] 3L_11686657_SNP [dm6]	T	G	5.117e^-4	0.935	INTRON Sug
3L	11679761	3L_11679761_SNP [dm3] 3L_11686661_SNP [dm6]	C	A	5.117e^-4	0.935	INTRON Sug
3L	11679773	3L_11679773_SNP [dm3] 3L_11686673_SNP [dm6]	C	T	5.117e^-4	0.935	INTRON Sug
3L	11679888	3L_11679888_SNP [dm3] 3L_11686788_SNP [dm6]	C	T	5.117e^-4	0.935	SYNONYMOUS_CODING Sug
3L	11680917	3L_11680917_SNP [dm3] 3L_11687817_SNP [dm6]	G	A	5.117e^-4	0.935	SYNONYMOUS_CODING Sug
3L	11681577	3L_11681577_SNP [dm3] 3L_11688477_SNP [dm6]	C	T	5.117e^-4	0.935	UTR_3_PRIME Sug INTRON Sug
2L	6750680	2L_6750680_DEL [dm3] 2L_6750680_DEL [dm6]	TT	T	5.131e^-4	0.935	INTRON CG11221
3R	27078067	3R_27078067_DEL [dm3] 3R_31252345_DEL [dm6]	GGGTCGA	G	5.135e^-4	0.935	UTR_5_PRIME qless UPSTREAM mRpL32 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26682918	3R_26682918_SNP [dm3] 3R_30857196_SNP [dm6]	T	A	5.140e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5044787	3L_5044787_DEL [dm3] 3L_5044787_DEL [dm6]	ATCTACTTGGGGTA...	A	5.145e^-4	0.935	INTRON Con
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	5.171e^-4	0.935	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
2L	2484466	2L_2484466_SNP [dm3] 2L_2484466_SNP [dm6]	G	T	5.175e^-4	0.935	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4302488	X_4302488_SNP [dm3] X_4408455_SNP [dm6]	G	A	5.181e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	5345943	3L_5345943_SNP [dm3] 3L_5352843_SNP [dm6]	C	A	5.193e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345959	3L_5345959_SNP [dm3] 3L_5352859_SNP [dm6]	A	G	5.193e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5345995	3L_5345995_SNP [dm3] 3L_5352895_SNP [dm6]	A	T	5.193e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5346005	3L_5346005_SNP [dm3] 3L_5352905_SNP [dm6]	A	G	5.193e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3110364	2L_3110364_SNP [dm3] 2L_3110364_SNP [dm6]	T	A	5.203e^-4	0.935	SYNONYMOUS_CODING PpD6 INTRON toc	TF binding site mE1_TFBS_HSA
3L	19321117	3L_19321117_SNP [dm3] 3L_19328017_SNP [dm6]	G	A	5.209e^-4	0.935	INTRON pip
3L	10558043	3L_10558043_SNP [dm3] 3L_10564943_SNP [dm6]	C	G	5.221e^-4	0.935	INTRON A2bp1
3L	10558049	3L_10558049_SNP [dm3] 3L_10564949_SNP [dm6]	G	A	5.221e^-4	0.935	INTRON A2bp1
3L	12244997	3L_12244997_SNP [dm3] 3L_12251897_SNP [dm6]	C	T	5.222e^-4	0.935	INTRON app
2L	16405595	2L_16405595_SNP [dm3] 2L_16405595_SNP [dm6]	C	T	5.231e^-4	0.935	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	16405598	2L_16405598_SNP [dm3] 2L_16405598_SNP [dm6]	C	T	5.231e^-4	0.935	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12260858	2L_12260858_SNP [dm3] 2L_12260858_SNP [dm6]	A	T	5.255e^-4	0.935	INTRON aret
3L	18657168	3L_18657168_SNP [dm3] 3L_18664068_SNP [dm6]	T	A	5.259e^-4	0.935	INTRON MYPT-75D
2R	8337268	2R_8337268_SNP [dm3] 2R_12449763_SNP [dm6]	C	T	5.272e^-4	0.935	SYNONYMOUS_CODING Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11594152	3R_11594152_SNP [dm3] 3R_15768430_SNP [dm6]	G	T	5.272e^-4	0.935	UPSTREAM CG5623 INTERGENIC
3L	11677493	3L_11677493_SNP [dm3] 3L_11684393_SNP [dm6]	G	A	5.287e^-4	0.935	UTR_5_PRIME Sug DOWNSTREAM TfIIEalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10014693	3L_10014693_SNP [dm3] 3L_10021593_SNP [dm6]	G	C	5.303e^-4	0.935	INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5737194	2R_5737194_SNP [dm3] 2R_9849689_SNP [dm6]	T	C	5.327e^-4	0.935	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2R	5737281	2R_5737281_SNP [dm3] 2R_9849776_SNP [dm6]	G	T	5.327e^-4	0.935	SYNONYMOUS_CODING CG1671 DOWNSTREAM CG1516	TF binding site mE1_TFBS_sens
2R	5737320	2R_5737320_SNP [dm3] 2R_9849815_SNP [dm6]	C	G	5.327e^-4	0.935	SYNONYMOUS_CODING CG1671 DOWNSTREAM CG1516	TF binding site mE1_TFBS_sens
2L	15136296	2L_15136296_SNP [dm3] 2L_15136296_SNP [dm6]	G	C	5.340e^-4	0.935	INTERGENIC
2R	5084386	2R_5084386_SNP [dm3] 2R_9196881_SNP [dm6]	A	C	5.357e^-4	0.935	INTRON unpg
2R	11214701	2R_11214701_SNP [dm3] 2R_15327196_SNP [dm6]	C	T	5.368e^-4	0.935	UTR_3_PRIME CG8160 UPSTREAM CG8157
2R	19179801	2R_19179801_SNP [dm3] 2R_23292278_SNP [dm6]	G	A	5.374e^-4	0.935	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9034552	3L_9034552_SNP [dm3] 3L_9041452_SNP [dm6]	T	C	5.374e^-4	0.935	UTR_5_PRIME Doc1 UPSTREAM Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2406132	2L_2406132_SNP [dm3] 2L_2406132_SNP [dm6]	G	C	5.382e^-4	0.935	INTRON VGlut	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11760727	2L_11760727_SNP [dm3] 2L_11760727_SNP [dm6]	G	C	5.383e^-4	0.935	INTERGENIC
2L	11760742	2L_11760742_SNP [dm3] 2L_11760742_SNP [dm6]	A	C	5.383e^-4	0.935	INTERGENIC
2L	11760744	2L_11760744_SNP [dm3] 2L_11760744_SNP [dm6]	A	T	5.383e^-4	0.935	INTERGENIC
3R	11006745	3R_11006745_SNP [dm3] 3R_15181023_SNP [dm6]	G	C	5.417e^-4	0.935	UPSTREAM Mf INTRON Gyc88E & 1 other
X	13713305	X_13713305_SNP [dm3] X_13819272_SNP [dm6]	T	A	5.430e^-4	0.935	INTRON Clic
2L	13546340	2L_13546340_SNP [dm3] 2L_13546340_SNP [dm6]	A	G	5.437e^-4	0.935	INTRON B4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3089808	2R_3089808_SNP [dm3] 2R_7202303_SNP [dm6]	G	T	5.447e^-4	0.935	INTRON pk
3L	11679906	3L_11679906_SNP [dm3] 3L_11686806_SNP [dm6]	A	G	5.454e^-4	0.935	SYNONYMOUS_CODING Sug
X	3645841	X_3645841_SNP [dm3] X_3751808_SNP [dm6]	T	A	5.458e^-4	0.935	INTRON tlk
2L	2884502	2L_2884502_SNP [dm3] 2L_2884502_SNP [dm6]	C	A	5.465e^-4	0.935	INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	8889094	2R_8889094_SNP [dm3] 2R_13001589_SNP [dm6]	T	C	5.468e^-4	0.935	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_sens
2R	8898297	2R_8898297_SNP [dm3] 2R_13010792_SNP [dm6]	G	C	5.473e^-4	0.935	INTERGENIC
2R	8898302	2R_8898302_SNP [dm3] 2R_13010797_SNP [dm6]	T	A	5.473e^-4	0.935	INTERGENIC
2L	9572159	2L_9572159_SNP [dm3] 2L_9572159_SNP [dm6]	T	C	5.473e^-4	0.935	SYNONYMOUS_CODING CG3838
2L	7640829	2L_7640829_SNP [dm3] 2L_7640829_SNP [dm6]	G	T	5.484e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8961686	2L_8961686_SNP [dm3] 2L_8961686_SNP [dm6]	G	A	5.487e^-4	0.935	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
2L	2387315	2L_2387315_SNP [dm3] 2L_2387315_SNP [dm6]	G	T	5.507e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10996543	2L_10996543_SNP [dm3] 2L_10996543_SNP [dm6]	A	C	5.513e^-4	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	2256564	2L_2256564_SNP [dm3] 2L_2256564_SNP [dm6]	T	C	5.531e^-4	0.935	INTERGENIC
2L	2256573	2L_2256573_SNP [dm3] 2L_2256573_SNP [dm6]	T	A	5.531e^-4	0.935	INTERGENIC
2L	2256575	2L_2256575_SNP [dm3] 2L_2256575_SNP [dm6]	T	A	5.531e^-4	0.935	INTERGENIC
2L	2256582	2L_2256582_SNP [dm3] 2L_2256582_SNP [dm6]	G	A	5.531e^-4	0.935	INTERGENIC
3R	13678351	3R_13678351_SNP [dm3] 3R_17852629_SNP [dm6]	A	C	5.532e^-4	0.935	NON_SYNONYMOUS_CODING tinc
X	6144100	X_6144100_SNP [dm3] X_6250067_SNP [dm6]	A	G	5.536e^-4	0.935	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5307974	3R_5307974_SNP [dm3] 3R_9482252_SNP [dm6]	T	G	5.538e^-4	0.935	INTRON CG16779
2R	17665502	2R_17665502_SNP [dm3] 2R_21777997_SNP [dm6]	G	A	5.543e^-4	0.935	INTERGENIC
2R	5500104	2R_5500104_SNP [dm3] 2R_9612599_SNP [dm6]	G	A	5.546e^-4	0.935	SYNONYMOUS_CODING Mmp2 INTRON CR44069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9757828	3R_9757828_SNP [dm3] 3R_13932106_SNP [dm6]	A	G	5.559e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19931105	2R_19931105_SNP [dm3] 2R_24043582_SNP [dm6]	C	T	5.560e^-4	0.935	SYNONYMOUS_CODING IntS1 DOWNSTREAM tsr	TF binding site mE1_TFBS_sens
X	6593163	X_6593163_INS [dm3] X_6699130_INS [dm6]	A	ATA	5.564e^-4	0.935	UPSTREAM CG14440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
2L	7765972	2L_7765972_SNP [dm3] 2L_7765972_SNP [dm6]	A	C	5.564e^-4	0.935	DOWNSTREAM CG7196 INTERGENIC
2L	7765983	2L_7765983_SNP [dm3] 2L_7765983_SNP [dm6]	T	C	5.564e^-4	0.935	DOWNSTREAM CG7196 INTERGENIC
2L	7765985	2L_7765985_SNP [dm3] 2L_7765985_SNP [dm6]	A	T	5.564e^-4	0.935	DOWNSTREAM CG7196 INTERGENIC
2L	7844420	2L_7844420_SNP [dm3] 2L_7844420_SNP [dm6]	G	A	5.565e^-4	0.935	DOWNSTREAM CG14535 INTERGENIC
3L	23310255	3L_23310255_SNP [dm3] 3L_23317155_SNP [dm6]	A	G	5.565e^-4	0.935	INTERGENIC	transposable element FlyBase
2L	6681440	2L_6681440_SNP [dm3] 2L_6681440_SNP [dm6]	A	T	5.568e^-4	0.935	INTRON Nhe3	TF binding site mE1_TFBS_inv
2L	7913650	2L_7913650_SNP [dm3] 2L_7913650_SNP [dm6]	T	C	5.603e^-4	0.935	INTRON Snoo
2L	9372133	2L_9372133_SNP [dm3] 2L_9372133_SNP [dm6]	T	A	5.631e^-4	0.935	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865
3L	17253556	3L_17253556_SNP [dm3] 3L_17260456_SNP [dm6]	T	A	5.641e^-4	0.935	DOWNSTREAM CR43874 INTRON CR43870
2L	5374379	2L_5374379_SNP [dm3] 2L_5374379_SNP [dm6]	C	A	5.647e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5374383	2L_5374383_SNP [dm3] 2L_5374383_SNP [dm6]	A	T	5.647e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11677366	3L_11677366_SNP [dm3] 3L_11684266_SNP [dm6]	G	A	5.650e^-4	0.935	START_GAINED Sug UTR_5_PRIME Sug DOWNSTREAM TfIIEalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	5.657e^-4	0.935	INTRON CG44837 & 1 other
2R	17550227	2R_17550227_SNP [dm3] 2R_21662722_SNP [dm6]	A	G	5.658e^-4	0.935	START_GAINED pirk UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
2L	6955724	2L_6955724_SNP [dm3] 2L_6955724_SNP [dm6]	G	A	5.662e^-4	0.935	SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
3R	11454684	3R_11454684_DEL [dm3] 3R_15628962_DEL [dm6]	CTCATTTGC	C	5.673e^-4	0.935	INTERGENIC
X	15429099	X_15429099_SNP [dm3] X_15535066_SNP [dm6]	C	T	5.673e^-4	0.935	INTRON Ac13E
X	21906190	X_21906190_SNP [dm3] X_22504354_SNP [dm6]	A	T	5.703e^-4	0.935	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2L	1440991	2L_1440991_SNP [dm3] 2L_1440991_SNP [dm6]	A	T	5.716e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6848545	3L_6848545_SNP [dm3] 3L_6855445_SNP [dm6]	T	A	5.730e^-4	0.935	INTERGENIC
X	6455969	X_6455969_SNP [dm3] X_6561936_SNP [dm6]	A	G	5.736e^-4	0.935	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14382834	2L_14382834_DEL [dm3] 2L_14382834_DEL [dm6]	CTATGACGTGGGCGAGAG...	C	5.737e^-4	0.935	INTERGENIC
3R	26678971	3R_26678971_SNP [dm3] 3R_30853249_SNP [dm6]	T	C	5.737e^-4	0.935	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10496045	2R_10496045_SNP [dm3] 2R_14608540_SNP [dm6]	T	C	5.751e^-4	0.935	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11884374	2R_11884374_SNP [dm3] 2R_15996869_SNP [dm6]	A	T	5.763e^-4	0.935	INTRON ATPCL
2L	4219331	2L_4219331_SNP [dm3] 2L_4219331_SNP [dm6]	C	G	5.769e^-4	0.935	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5735871	2R_5735871_SNP [dm3] 2R_9848366_SNP [dm6]	G	T	5.776e^-4	0.935	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6637326	3L_6637326_DEL [dm3] 3L_6644226_DEL [dm6]	TACCG	T	5.787e^-4	0.935	INTERGENIC
2L	10271952	2L_10271952_SNP [dm3] 2L_10271952_SNP [dm6]	G	A	5.794e^-4	0.935	SYNONYMOUS_CODING trk DOWNSTREAM Utx & 1 other	TF binding site mE1_TFBS_sens
X	17507077	X_17507077_SNP [dm3] X_17613044_SNP [dm6]	A	T	5.796e^-4	0.935	INTERGENIC
2R	19565113	2R_19565113_SNP [dm3] 2R_23677590_SNP [dm6]	T	C	5.801e^-4	0.935	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad
3R	20131180	3R_20131180_SNP [dm3] 3R_24305458_SNP [dm6]	C	T	5.816e^-4	0.935	SYNONYMOUS_CODING crb	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	12400051	2R_12400051_SNP [dm3] 2R_16512546_SNP [dm6]	C	A	5.823e^-4	0.935	INTRON Sema-2a
3L	8297499	3L_8297499_SNP [dm3] 3L_8304399_SNP [dm6]	A	G	5.830e^-4	0.935	SYNONYMOUS_CODING Sbp2 UPSTREAM CG7194 DOWNSTREAM Gr66a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6275047	3L_6275047_SNP [dm3] 3L_6281947_SNP [dm6]	T	A	5.843e^-4	0.935	INTERGENIC
3L	6275093	3L_6275093_SNP [dm3] 3L_6281993_SNP [dm6]	C	T	5.843e^-4	0.935	INTERGENIC
3L	6275096	3L_6275096_SNP [dm3] 3L_6281996_SNP [dm6]	T	C	5.843e^-4	0.935	INTERGENIC
3L	6275134	3L_6275134_SNP [dm3] 3L_6282034_SNP [dm6]	A	T	5.843e^-4	0.935	INTERGENIC
3L	6275154	3L_6275154_SNP [dm3] 3L_6282054_SNP [dm6]	G	C	5.843e^-4	0.935	INTERGENIC
3R	13685419	3R_13685419_SNP [dm3] 3R_17859697_SNP [dm6]	G	T	5.849e^-4	0.935	INTRON tinc
3R	13685422	3R_13685422_SNP [dm3] 3R_17859700_SNP [dm6]	A	C	5.849e^-4	0.935	INTRON tinc
3R	13685442	3R_13685442_SNP [dm3] 3R_17859720_SNP [dm6]	C	A	5.849e^-4	0.935	INTRON tinc
3R	13685472	3R_13685472_SNP [dm3] 3R_17859750_SNP [dm6]	G	A	5.849e^-4	0.935	INTRON tinc
X	17266835	X_17266835_SNP [dm3] X_17372802_SNP [dm6]	G	A	5.850e^-4	0.935	INTERGENIC
2L	21715176	2L_21715176_SNP [dm3] 2L_21715176_SNP [dm6]	G	C	5.878e^-4	0.935	INTRON CG31619
2R	14019971	2R_14019971_SNP [dm3] 2R_18132466_SNP [dm6]	T	G	5.879e^-4	0.935	SYNONYMOUS_CODING Hsf	TF binding site mE1_TFBS_sens
2L	1720185	2L_1720185_SNP [dm3] 2L_1720185_SNP [dm6]	A	G	5.887e^-4	0.935	INTRON Rim2
3R	20401943	3R_20401943_DEL [dm3] 3R_24576221_DEL [dm6]	TAC	T	5.906e^-4	0.935	INTRON CG13624
X	14545847	X_14545847_SNP [dm3] X_14651814_SNP [dm6]	T	A	5.909e^-4	0.935	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6119556	2R_6119556_SNP [dm3] 2R_10232051_SNP [dm6]	T	C	5.921e^-4	0.935	NON_SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	13856070	X_13856070_INS [dm3] X_13962037_INS [dm6]	A	AA	5.923e^-4	0.935	INTRON mamo
X	20146647	X_20146647_SNP [dm3] X_20275621_SNP [dm6]	C	T	5.927e^-4	0.935	INTERGENIC
2R	3215855	2R_3215855_INS [dm3] 2R_7328350_INS [dm6]	T	TGTAC	5.927e^-4	0.935	INTRON CR45129 & 1 other
3R	13768204	3R_13768204_SNP [dm3] 3R_17942482_SNP [dm6]	T	C	5.945e^-4	0.935	INTRON cpo	TF binding site mE1_TFBS_HSA
3R	21269373	3R_21269373_SNP [dm3] 3R_25443651_SNP [dm6]	G	C	5.964e^-4	0.935	INTRON Fur1
3R	15970571	3R_15970571_SNP [dm3] 3R_20144849_SNP [dm6]	C	T	5.966e^-4	0.935	INTERGENIC
2R	12648200	2R_12648200_SNP [dm3] 2R_16760695_SNP [dm6]	T	G	5.988e^-4	0.935	SYNONYMOUS_CODING unc-104
3R	17353756	3R_17353756_SNP [dm3] 3R_21528034_SNP [dm6]	T	A	6.017e^-4	0.935	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
3R	17353766	3R_17353766_SNP [dm3] 3R_21528044_SNP [dm6]	G	T	6.017e^-4	0.935	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
3L	8196635	3L_8196635_SNP [dm3] 3L_8203535_SNP [dm6]	T	C	6.039e^-4	0.935	DOWNSTREAM CG13679 INTERGENIC
2R	10538405	2R_10538405_SNP [dm3] 2R_14650900_SNP [dm6]	G	A	6.042e^-4	0.935	INTERGENIC
X	11237215	X_11237215_SNP [dm3] X_11343182_SNP [dm6]	C	T	6.043e^-4	0.935	INTRON CG34348
X	11237239	X_11237239_SNP [dm3] X_11343206_SNP [dm6]	C	T	6.043e^-4	0.935	INTRON CG34348
3R	22764367	3R_22764367_SNP [dm3] 3R_26938645_SNP [dm6]	C	A	6.094e^-4	0.935	INTRON sda
2R	17821400	2R_17821400_INS [dm3] 2R_21933895_INS [dm6]	G	GG	6.102e^-4	0.935	INTRON Fili
2L	6712541	2L_6712541_SNP [dm3] 2L_6712541_SNP [dm6]	A	T	6.108e^-4	0.935	SYNONYMOUS_CODING AkhR
3L	4056080	3L_4056080_DEL [dm3] 3L_4056080_DEL [dm6]	ATTTAAA	A	6.110e^-4	0.935	INTRON CG1136
2L	7765997	2L_7765997_SNP [dm3] 2L_7765997_SNP [dm6]	C	T	6.113e^-4	0.935	DOWNSTREAM CG7196 INTERGENIC
2L	16487818	2L_16487818_SNP [dm3] 2L_16487818_SNP [dm6]	A	T	6.122e^-4	0.935	UPSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	20142729	2R_20142729_SNP [dm3] 2R_24255206_SNP [dm6]	C	G	6.127e^-4	0.935	UPSTREAM CG13575 DOWNSTREAM nord INTERGENIC	TF binding site mE1_TFBS_cad
2R	11873816	2R_11873816_SNP [dm3] 2R_15986311_SNP [dm6]	G	A	6.130e^-4	0.935	INTRON Strn-Mlck
2R	10792963	2R_10792963_SNP [dm3] 2R_14905458_SNP [dm6]	G	T	6.133e^-4	0.935	SPLICE_SITE_REGION CG10249 INTRON CG10249	TF binding site mE1_TFBS_chinmo
2R	10792994	2R_10792994_SNP [dm3] 2R_14905489_SNP [dm6]	C	T	6.133e^-4	0.935	INTRON CG10249	TF binding site mE1_TFBS_chinmo
2R	13186662	2R_13186662_SNP [dm3] 2R_17299157_SNP [dm6]	A	G	6.134e^-4	0.935	INTRON mbl
2L	7903877	2L_7903877_SNP [dm3] 2L_7903877_SNP [dm6]	A	T	6.139e^-4	0.935	INTRON Snoo
2R	12665551	2R_12665551_SNP [dm3] 2R_16778046_SNP [dm6]	T	C	6.157e^-4	0.935	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18006448	3L_18006448_SNP [dm3] 3L_18013348_SNP [dm6]	A	T	6.178e^-4	0.935	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5032446	2L_5032446_INS [dm3] 2L_5032446_INS [dm6]	A	AA	6.188e^-4	0.935	INTRON Cg25C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	4595313	X_4595313_SNP [dm3] X_4701280_SNP [dm6]	A	T	6.217e^-4	0.935	UTR_3_PRIME ctp	TF binding site BDTNP1_TFBS_dl
2L	10269663	2L_10269663_SNP [dm3] 2L_10269663_SNP [dm6]	A	G	6.222e^-4	0.935	SYNONYMOUS_CODING CG4957 UPSTREAM Mulk DOWNSTREAM CG4953	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12889427	3R_12889427_SNP [dm3] 3R_17063705_SNP [dm6]	C	G	6.231e^-4	0.935	INTRON Dad
X	2331802	X_2331802_SNP [dm3] X_2437769_SNP [dm6]	T	C	6.232e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12236088	2R_12236088_SNP [dm3] 2R_16348583_SNP [dm6]	C	A	6.233e^-4	0.935	UPSTREAM CG15710 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4302725	X_4302725_SNP [dm3] X_4408692_SNP [dm6]	A	C	6.243e^-4	0.935	INTRON CR32773
X	7612380	X_7612380_SNP [dm3] X_7718347_SNP [dm6]	C	T	6.278e^-4	0.935	UPSTREAM CG15478 INTERGENIC
2L	16702029	2L_16702029_SNP [dm3] 2L_16702029_SNP [dm6]	A	C	6.286e^-4	0.935	EXON CR43670	TF binding site mE1_TFBS_sens
3R	10262652	3R_10262652_SNP [dm3] 3R_14436930_SNP [dm6]	G	A	6.292e^-4	0.935	INTRON cv-c
2R	5784731	2R_5784731_SNP [dm3] 2R_9897226_SNP [dm6]	C	A	6.295e^-4	0.935	NON_SYNONYMOUS_CODING CG30007
2L	11945579	2L_11945579_SNP [dm3] 2L_11945579_SNP [dm6]	A	G	6.302e^-4	0.935	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5346003	3L_5346003_SNP [dm3] 3L_5352903_SNP [dm6]	G	A	6.303e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13523192	3R_13523192_SNP [dm3] 3R_17697470_SNP [dm6]	G	T	6.303e^-4	0.935	INTRON osa
3R	10415439	3R_10415439_SNP [dm3] 3R_14589717_SNP [dm6]	A	G	6.329e^-4	0.935	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4302555	X_4302555_SNP [dm3] X_4408522_SNP [dm6]	C	T	6.343e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	15292420	2L_15292420_SNP [dm3] 2L_15292420_SNP [dm6]	T	A	6.378e^-4	0.935	UPSTREAM ms_2_35Ci & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15292452	2L_15292452_SNP [dm3] 2L_15292452_SNP [dm6]	G	T	6.378e^-4	0.935	UPSTREAM ms_2_35Ci & 1 other INTERGENIC
2R	19892679	2R_19892679_SNP [dm3] 2R_24005156_SNP [dm6]	T	A	6.380e^-4	0.935	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17705905	3L_17705905_SNP [dm3] 3L_17712805_SNP [dm6]	T	G	6.396e^-4	0.935	INTRON Ccn
3R	23984167	3R_23984167_SNP [dm3] 3R_28158445_SNP [dm6]	C	T	6.419e^-4	0.935	INTRON CG34354
3L	5848443	3L_5848443_SNP [dm3] 3L_5855343_SNP [dm6]	C	T	6.422e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	18531804	3R_18531804_SNP [dm3] 3R_22706082_SNP [dm6]	G	C	6.442e^-4	0.935	SYNONYMOUS_CODING CG13842
2R	17846525	2R_17846525_SNP [dm3] 2R_21959020_SNP [dm6]	T	A	6.443e^-4	0.935	INTERGENIC
3R	16894612	3R_16894612_SNP [dm3] 3R_21068890_SNP [dm6]	A	C	6.455e^-4	0.935	SYNONYMOUS_CODING AnxB9	TF binding site mE1_TFBS_HSA
3L	10017954	3L_10017954_INS [dm3] 3L_10024854_INS [dm6]	C	CCAC	6.461e^-4	0.935	INTRON dpr6
2L	13211768	2L_13211768_SNP [dm3] 2L_13211768_SNP [dm6]	A	G	6.497e^-4	0.935	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3645811	X_3645811_SNP [dm3] X_3751778_SNP [dm6]	A	T	6.498e^-4	0.935	INTRON tlk
2L	2925012	2L_2925012_SNP [dm3] 2L_2925012_SNP [dm6]	G	A	6.501e^-4	0.935	UTR_5_PRIME lilli INTRON lilli
2L	5255279	2L_5255279_SNP [dm3] 2L_5255279_SNP [dm6]	T	G	6.521e^-4	0.935	INTRON tkv
X	3903542	X_3903542_SNP [dm3] X_4009509_SNP [dm6]	C	T	6.550e^-4	0.935	INTERGENIC
2R	11170804	2R_11170804_SNP [dm3] 2R_15283299_SNP [dm6]	G	A	6.551e^-4	0.935	INTRON Trpm
2R	6139015	2R_6139015_SNP [dm3] 2R_10251510_SNP [dm6]	C	A	6.562e^-4	0.935	INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2814737	2R_2814737_DEL [dm3] 2R_6927232_DEL [dm6]	AA	A	6.564e^-4	0.935	INTRON mim	TF binding site mE1_TFBS_cad
2R	4067591	2R_4067591_SNP [dm3] 2R_8180086_SNP [dm6]	G	A	6.565e^-4	0.935	INTRON LRP1
3R	20538590	3R_20538590_SNP [dm3] 3R_24712868_SNP [dm6]	C	T	6.569e^-4	0.935	UTR_5_PRIME CG13627
2L	11297522	2L_11297522_SNP [dm3] 2L_11297522_SNP [dm6]	A	G	6.584e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13533477	3L_13533477_SNP [dm3] 3L_13540377_SNP [dm6]	A	G	6.589e^-4	0.935	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16171859	X_16171859_SNP [dm3] X_16277826_SNP [dm6]	G	T	6.592e^-4	0.935	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16171867	X_16171867_SNP [dm3] X_16277834_SNP [dm6]	A	T	6.592e^-4	0.935	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16172123	X_16172123_SNP [dm3] X_16278090_SNP [dm6]	A	G	6.592e^-4	0.935	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1291395	3L_1291395_SNP [dm3] 3L_1291395_SNP [dm6]	C	T	6.595e^-4	0.935	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11610863	3R_11610863_SNP [dm3] 3R_15785141_SNP [dm6]	T	G	6.599e^-4	0.935	INTERGENIC
2L	16210408	2L_16210408_SNP [dm3] 2L_16210408_SNP [dm6]	A	T	6.609e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16210434	2L_16210434_SNP [dm3] 2L_16210434_SNP [dm6]	G	A	6.609e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16210435	2L_16210435_SNP [dm3] 2L_16210435_SNP [dm6]	T	A	6.609e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16210437	2L_16210437_INS [dm3] 2L_16210437_INS [dm6]	A	AA	6.609e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18155409	3R_18155409_SNP [dm3] 3R_22329687_SNP [dm6]	A	T	6.618e^-4	0.935	NON_SYNONYMOUS_CODING CG7080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8428135	2R_8428135_SNP [dm3] 2R_12540630_SNP [dm6]	A	G	6.626e^-4	0.935	INTRON fra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11610752	3R_11610752_SNP [dm3] 3R_15785030_SNP [dm6]	G	T	6.649e^-4	0.935	INTERGENIC
3R	11644667	3R_11644667_SNP [dm3] 3R_15818945_SNP [dm6]	T	G	6.659e^-4	0.935	UTR_5_PRIME alpha-Man-IIb	TF binding site mE1_TFBS_cad
3L	17240925	3L_17240925_SNP [dm3] 3L_17247825_SNP [dm6]	A	G	6.675e^-4	0.935	INTRON CR43870
3L	18266263	3L_18266263_SNP [dm3] 3L_18273163_SNP [dm6]	T	G	6.681e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16458585	2L_16458585_SNP [dm3] 2L_16458585_SNP [dm6]	A	G	6.681e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
X	18316998	X_18316998_SNP [dm3] X_18422965_SNP [dm6]	T	C	6.683e^-4	0.935	INTRON CG42323
3L	10894897	3L_10894897_SNP [dm3] 3L_10901797_SNP [dm6]	G	A	6.714e^-4	0.935	INTERGENIC
2R	4619962	2R_4619962_SNP [dm3] 2R_8732457_SNP [dm6]	A	G	6.717e^-4	0.935	SPLICE_SITE_REGION stmA INTRON stmA	TF binding site mE1_TFBS_sens
2L	7297692	2L_7297692_SNP [dm3] 2L_7297692_SNP [dm6]	T	C	6.724e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17120096	2R_17120096_SNP [dm3] 2R_21232591_SNP [dm6]	A	T	6.733e^-4	0.935	INTRON ASPP
3R	12904834	3R_12904834_SNP [dm3] 3R_17079112_SNP [dm6]	A	T	6.754e^-4	0.935	INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl mE1_TFBS_zfh1
X	4868534	X_4868534_SNP [dm3] X_4974501_SNP [dm6]	C	A	6.774e^-4	0.935	INTRON CR44833
3L	2058197	3L_2058197_SNP [dm3] 3L_2058197_SNP [dm6]	T	C	6.781e^-4	0.935	SYNONYMOUS_CODING sls INTRON sls
3R	10949139	3R_10949139_SNP [dm3] 3R_15123417_SNP [dm6]	G	A	6.802e^-4	0.935	INTRON CG42788
X	3645884	X_3645884_SNP [dm3] X_3751851_SNP [dm6]	A	C	6.802e^-4	0.935	INTRON tlk
3L	10530999	3L_10530999_SNP [dm3] 3L_10537899_SNP [dm6]	T	C	6.811e^-4	0.935	INTRON A2bp1
2L	9632165	2L_9632165_SNP [dm3] 2L_9632165_SNP [dm6]	C	A	6.815e^-4	0.935	INTERGENIC
3L	19125340	3L_19125340_SNP [dm3] 3L_19132240_SNP [dm6]	C	A	6.844e^-4	0.935	INTRON CG14082
2R	6154658	2R_6154658_SNP [dm3] 2R_10267153_SNP [dm6]	G	A	6.848e^-4	0.935	SYNONYMOUS_CODING CG12910	TF binding site BDTNP1_TFBS_da
2L	3752074	2L_3752074_SNP [dm3] 2L_3752074_SNP [dm6]	C	T	6.861e^-4	0.935	NON_SYNONYMOUS_CODING CG10019
3L	2459691	3L_2459691_SNP [dm3] 3L_2459691_SNP [dm6]	C	T	6.867e^-4	0.935	SYNONYMOUS_CODING CG45186 START_GAINED CG45186 UTR_5_PRIME CG45186
X	19228848	X_19228848_SNP [dm3] X_19334815_SNP [dm6]	A	C	6.872e^-4	0.935	INTRON nAChRalpha7
3L	8838346	3L_8838346_INS [dm3] 3L_8845246_INS [dm6]	C	CC	6.874e^-4	0.935	INTRON dally
3L	6324890	3L_6324890_SNP [dm3] 3L_6331790_SNP [dm6]	C	G	6.874e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8653236	2L_8653236_SNP [dm3] 2L_8653236_SNP [dm6]	A	T	6.885e^-4	0.935	INTRON Sema-1a
2L	8653240	2L_8653240_SNP [dm3] 2L_8653240_SNP [dm6]	G	A	6.885e^-4	0.935	INTRON Sema-1a
2L	1620718	2L_1620718_SNP [dm3] 2L_1620718_SNP [dm6]	T	C	6.908e^-4	0.935	EXON CR44603	TF binding site BDTNP1_TFBS_dl
3R	19555308	3R_19555308_SNP [dm3] 3R_23729586_SNP [dm6]	T	A	6.909e^-4	0.935	DOWNSTREAM RNaseMRP:RNA INTRON CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3252712	2R_3252712_SNP [dm3] 2R_7365207_SNP [dm6]	G	A	6.934e^-4	0.935	INTRON Dscam1	TF binding site mE1_TFBS_HSA
3L	11680276	3L_11680276_SNP [dm3] 3L_11687176_SNP [dm6]	T	G	6.950e^-4	0.935	NON_SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3092243	2R_3092243_SNP [dm3] 2R_7204738_SNP [dm6]	C	T	6.964e^-4	0.935	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1554665	2L_1554665_SNP [dm3] 2L_1554665_SNP [dm6]	T	A	6.975e^-4	0.935	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11640795	3L_11640795_SNP [dm3] 3L_11647695_SNP [dm6]	T	C	6.975e^-4	0.935	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	6719659	2R_6719659_SNP [dm3] 2R_10832154_SNP [dm6]	A	C	7.013e^-4	0.935	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	17846718	2R_17846718_SNP [dm3] 2R_21959213_SNP [dm6]	G	T	7.014e^-4	0.935	INTERGENIC
3L	19099531	3L_19099531_SNP [dm3] 3L_19106431_SNP [dm6]	T	A	7.020e^-4	0.935	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	19099532	3L_19099532_SNP [dm3] 3L_19106432_SNP [dm6]	C	A	7.020e^-4	0.935	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
2R	13797783	2R_13797783_SNP [dm3] 2R_17910278_SNP [dm6]	A	G	7.024e^-4	0.935	INTRON Elk
3R	13744576	3R_13744576_SNP [dm3] 3R_17918854_SNP [dm6]	A	C	7.033e^-4	0.935	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	1339787	3R_1339787_SNP [dm3] 3R_5514065_SNP [dm6]	A	T	7.036e^-4	0.935	INTRON Nmdar1
3R	15970303	3R_15970303_SNP [dm3] 3R_20144581_SNP [dm6]	A	G	7.056e^-4	0.935	INTERGENIC
3R	15970307	3R_15970307_SNP [dm3] 3R_20144585_SNP [dm6]	T	C	7.056e^-4	0.935	INTERGENIC
2L	8721612	2L_8721612_DEL [dm3] 2L_8721612_DEL [dm6]	GG	G	7.074e^-4	0.935	INTRON raw
2L	21756048	2L_21756048_SNP [dm3] 2L_21756048_SNP [dm6]	G	A	7.094e^-4	0.935	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11679544	3L_11679544_SNP [dm3] 3L_11686444_SNP [dm6]	C	A	7.104e^-4	0.935	INTRON Sug
2L	12079550	2L_12079550_SNP [dm3] 2L_12079550_SNP [dm6]	T	A	7.135e^-4	0.935	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11709685	3L_11709685_SNP [dm3] 3L_11716585_SNP [dm6]	A	C	7.137e^-4	0.935	INTERGENIC
3L	23191169	3L_23191169_SNP [dm3] 3L_23198069_SNP [dm6]	T	A	7.151e^-4	0.935	INTERGENIC	transposable element FlyBase
3R	17114905	3R_17114905_SNP [dm3] 3R_21289183_SNP [dm6]	G	A	7.164e^-4	0.935	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10181687	2L_10181687_SNP [dm3] 2L_10181687_SNP [dm6]	T	G	7.167e^-4	0.935	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
X	4404038	X_4404038_SNP [dm3] X_4510005_SNP [dm6]	A	C	7.178e^-4	0.935	INTRON CR32773
2L	2887739	2L_2887739_SNP [dm3] 2L_2887739_SNP [dm6]	T	C	7.188e^-4	0.935	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	3153142	X_3153142_SNP [dm3] X_3259109_SNP [dm6]	C	A	7.195e^-4	0.935	INTRON dnc
3L	19125314	3L_19125314_SNP [dm3] 3L_19132214_SNP [dm6]	T	C	7.206e^-4	0.935	INTRON CG14082
2R	3226949	2R_3226949_SNP [dm3] 2R_7339444_SNP [dm6]	C	T	7.208e^-4	0.935	NON_SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3R	8513363	3R_8513363_SNP [dm3] 3R_12687641_SNP [dm6]	T	C	7.209e^-4	0.935	INTRON kar	TF binding site mE1_TFBS_chinmo
3R	8513398	3R_8513398_SNP [dm3] 3R_12687676_SNP [dm6]	A	G	7.209e^-4	0.935	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16382751	2L_16382751_SNP [dm3] 2L_16382751_SNP [dm6]	G	A	7.211e^-4	0.935	INTERGENIC
2L	16382832	2L_16382832_SNP [dm3] 2L_16382832_SNP [dm6]	C	A	7.211e^-4	0.935	INTERGENIC
2R	2938935	2R_2938935_SNP [dm3] 2R_7051430_SNP [dm6]	C	T	7.224e^-4	0.935	SYNONYMOUS_CODING lbm
2L	4866519	2L_4866519_SNP [dm3] 2L_4866519_SNP [dm6]	C	T	7.247e^-4	0.935	INTRON pog
2R	9346258	2R_9346258_SNP [dm3] 2R_13458753_SNP [dm6]	G	A	7.261e^-4	0.935	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7614412	2L_7614412_SNP [dm3] 2L_7614412_SNP [dm6]	C	T	7.263e^-4	0.935	SYNONYMOUS_CODING CG6739
3R	907039	3R_907039_SNP [dm3] 3R_5081317_SNP [dm6]	G	T	7.273e^-4	0.935	UTR_3_PRIME corto
2L	16469395	2L_16469395_SNP [dm3] 2L_16469395_SNP [dm6]	A	G	7.274e^-4	0.935	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11214990	2R_11214990_SNP [dm3] 2R_15327485_SNP [dm6]	C	T	7.286e^-4	0.935	UTR_3_PRIME CG8160
2L	9289912	2L_9289912_SNP [dm3] 2L_9289912_SNP [dm6]	T	C	7.307e^-4	0.935	INTRON Ggamma30A
3R	21714160	3R_21714160_SNP [dm3] 3R_25888438_SNP [dm6]	A	C	7.317e^-4	0.935	UPSTREAM Lnk DOWNSTREAM SppL INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	17663379	2R_17663379_SNP [dm3] 2R_21775874_SNP [dm6]	T	C	7.318e^-4	0.935	DOWNSTREAM CG4021 INTERGENIC
X	2216067	X_2216067_SNP [dm3] X_2322034_SNP [dm6]	G	T	7.318e^-4	0.935	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12606207	3L_12606207_SNP [dm3] 3L_12613107_SNP [dm6]	T	A	7.338e^-4	0.935	INTRON caup	silencer mE1_HDAC_PRE
3L	12606208	3L_12606208_SNP [dm3] 3L_12613108_SNP [dm6]	T	A	7.338e^-4	0.935	INTRON caup	silencer mE1_HDAC_PRE
3R	9604315	3R_9604315_SNP [dm3] 3R_13778593_SNP [dm6]	G	A	7.345e^-4	0.935	UTR_3_PRIME CG9297	TF binding site mE1_TFBS_Trl
X	12609737	X_12609737_SNP [dm3] X_12715704_SNP [dm6]	A	C	7.348e^-4	0.935	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	14555140	2R_14555140_SNP [dm3] 2R_18667635_SNP [dm6]	T	C	7.364e^-4	0.935	UTR_3_PRIME edl	TF binding site mE1_TFBS_HSA
2R	1575692	2R_1575692_SNP [dm3] 2R_5688187_SNP [dm6]	T	A	7.372e^-4	0.935	INTRON scaf
2R	10509939	2R_10509939_SNP [dm3] 2R_14622434_SNP [dm6]	G	A	7.381e^-4	0.935	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	12163992	X_12163992_SNP [dm3] X_12269959_SNP [dm6]	G	A	7.394e^-4	0.935	INTRON Ten-a
2L	10859494	2L_10859494_SNP [dm3] 2L_10859494_SNP [dm6]	C	A	7.410e^-4	0.935	SYNONYMOUS_CODING Stam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22154029	3R_22154029_SNP [dm3] 3R_26328307_SNP [dm6]	A	G	7.414e^-4	0.935	INTRON CG33970
2L	9506959	2L_9506959_SNP [dm3] 2L_9506959_SNP [dm6]	C	T	7.446e^-4	0.935	INTRON CG33298
2R	16401412	2R_16401412_SNP [dm3] 2R_20513907_SNP [dm6]	G	T	7.451e^-4	0.935	UPSTREAM CG13426 INTERGENIC
3L	5589831	3L_5589831_SNP [dm3] 3L_5596731_SNP [dm6]	C	T	7.453e^-4	0.935	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15610586	2L_15610586_SNP [dm3] 2L_15610586_SNP [dm6]	C	T	7.461e^-4	0.935	UTR_3_PRIME CG15255 DOWNSTREAM CG15255 EXON CR44865
3L	19277698	3L_19277698_SNP [dm3] 3L_19284598_SNP [dm6]	T	C	7.465e^-4	0.935	NON_SYNONYMOUS_CODING Gbs-76A
2L	2887982	2L_2887982_SNP [dm3] 2L_2887982_SNP [dm6]	G	T	7.494e^-4	0.935	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	24230669	3R_24230669_SNP [dm3] 3R_28404947_SNP [dm6]	G	A	7.499e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6814535	2L_6814535_SNP [dm3] 2L_6814535_SNP [dm6]	T	C	7.516e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	15905376	3L_15905376_SNP [dm3] 3L_15912276_SNP [dm6]	G	C	7.518e^-4	0.935	INTRON sff
X	5574709	X_5574709_SNP [dm3] X_5680676_SNP [dm6]	G	C	7.524e^-4	0.935	UTR_5_PRIME Gr5a UPSTREAM Tre1 EXON CR44958	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11760777	2L_11760777_SNP [dm3] 2L_11760777_SNP [dm6]	A	G	7.524e^-4	0.935	INTERGENIC
3L	5521965	3L_5521965_SNP [dm3] 3L_5528865_SNP [dm6]	G	A	7.531e^-4	0.935	INTRON Lkr
3L	11064520	3L_11064520_SNP [dm3] 3L_11071420_SNP [dm6]	T	C	7.538e^-4	0.935	INTRON Mocs1
3L	6654820	3L_6654820_SNP [dm3] 3L_6661720_SNP [dm6]	C	T	7.544e^-4	0.935	INTERGENIC
2L	11490925	2L_11490925_SNP [dm3] 2L_11490925_SNP [dm6]	C	T	7.553e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6338609	3L_6338609_SNP [dm3] 3L_6345509_SNP [dm6]	T	A	7.571e^-4	0.935	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	3737464	X_3737464_SNP [dm3] X_3843431_SNP [dm6]	G	A	7.575e^-4	0.935	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	7.596e^-4	0.935	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	6742379	2L_6742379_SNP [dm3] 2L_6742379_SNP [dm6]	C	G	7.604e^-4	0.935	UPSTREAM CG11221 INTERGENIC
3R	23813292	3R_23813292_INS [dm3] 3R_27987570_INS [dm6]	A	AA	7.624e^-4	0.935	INTRON betaTub97EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3934958	3L_3934958_SNP [dm3] 3L_3934958_SNP [dm6]	G	A	7.633e^-4	0.935	INTRON Eip63F-1 EXON Eip63F-2
X	11112481	X_11112481_INS [dm3] X_11218448_INS [dm6]	T	TT	7.639e^-4	0.935	DOWNSTREAM CG44422 INTERGENIC
3L	16192325	3L_16192325_SNP [dm3] 3L_16199225_SNP [dm6]	T	A	7.642e^-4	0.935	SYNONYMOUS_CODING CG33688 DOWNSTREAM CG33687
3L	9034520	3L_9034520_SNP [dm3] 3L_9041420_SNP [dm6]	T	A	7.653e^-4	0.935	UTR_5_PRIME Doc1 UPSTREAM Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9034575	3L_9034575_SNP [dm3] 3L_9041475_SNP [dm6]	C	G	7.653e^-4	0.935	UTR_5_PRIME Doc1 UPSTREAM Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11679484	3L_11679484_SNP [dm3] 3L_11686384_SNP [dm6]	A	C	7.661e^-4	0.935	INTRON Sug
2L	2845139	2L_2845139_SNP [dm3] 2L_2845139_SNP [dm6]	C	G	7.662e^-4	0.935	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117	TF binding site mE1_TFBS_cad
3R	3612254	3R_3612254_SNP [dm3] 3R_7786532_SNP [dm6]	T	C	7.662e^-4	0.935	NON_SYNONYMOUS_CODING CG18748 UPSTREAM CG18745	TF binding site mE1_TFBS_sens
2L	10996839	2L_10996839_SNP [dm3] 2L_10996839_SNP [dm6]	G	A	7.665e^-4	0.935	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 & 1 other INTRON CG16833
2L	8325904	2L_8325904_SNP [dm3] 2L_8325904_SNP [dm6]	A	T	7.666e^-4	0.935	UPSTREAM CG7781 INTERGENIC
3L	13886071	3L_13886071_SNP [dm3] 3L_13892971_SNP [dm6]	G	T	7.667e^-4	0.935	INTRON dysc
2R	16955750	2R_16955750_SNP [dm3] 2R_21068245_SNP [dm6]	A	G	7.670e^-4	0.935	SYNONYMOUS_CODING Cht9 UPSTREAM CR44703	TF binding site mE1_TFBS_cad
3R	854430	3R_854430_SNP [dm3] 3R_5028708_SNP [dm6]	G	A	7.678e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16856391	3R_16856391_SNP [dm3] 3R_21030669_SNP [dm6]	C	T	7.695e^-4	0.935	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11452310	2L_11452310_SNP [dm3] 2L_11452310_SNP [dm6]	T	G	7.699e^-4	0.935	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16382841	2L_16382841_SNP [dm3] 2L_16382841_SNP [dm6]	A	T	7.714e^-4	0.935	INTERGENIC
2R	15265853	2R_15265853_SNP [dm3] 2R_19378348_SNP [dm6]	C	T	7.719e^-4	0.935	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3692541	2L_3692541_SNP [dm3] 2L_3692541_SNP [dm6]	A	G	7.758e^-4	0.935	UTR_5_PRIME CG16704 DOWNSTREAM CG3513 & 2 others
2R	17120062	2R_17120062_SNP [dm3] 2R_21232557_SNP [dm6]	C	T	7.803e^-4	0.935	INTRON ASPP
2L	21939186	2L_21939186_SNP [dm3] 2L_21939186_SNP [dm6]	A	T	7.806e^-4	0.935	INTERGENIC
3L	5649702	3L_5649702_SNP [dm3] 3L_5656602_SNP [dm6]	T	C	7.810e^-4	0.935	SPLICE_SITE_REGION lin-28 INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10614399	3L_10614399_SNP [dm3] 3L_10621299_SNP [dm6]	G	A	7.822e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	5784679	2R_5784679_SNP [dm3] 2R_9897174_SNP [dm6]	A	G	7.827e^-4	0.935	SYNONYMOUS_CODING CG30007
2R	6776610	2R_6776610_SNP [dm3] 2R_10889105_SNP [dm6]	C	A	7.828e^-4	0.935	INTRON CG30020
X	17507027	X_17507027_SNP [dm3] X_17612994_SNP [dm6]	A	C	7.838e^-4	0.935	INTERGENIC
3R	19501190	3R_19501190_SNP [dm3] 3R_23675468_SNP [dm6]	G	A	7.843e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10098059	3R_10098059_SNP [dm3] 3R_14272337_SNP [dm6]	G	T	7.850e^-4	0.935	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3661574	3L_3661574_SNP [dm3] 3L_3661574_SNP [dm6]	C	T	7.853e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3661577	3L_3661577_SNP [dm3] 3L_3661577_SNP [dm6]	C	T	7.853e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12689388	3R_12689388_SNP [dm3] 3R_16863666_SNP [dm6]	T	A	7.857e^-4	0.935	INTRON iab-8
2R	17412338	2R_17412338_SNP [dm3] 2R_21524833_SNP [dm6]	C	T	7.888e^-4	0.935	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	5443095	2R_5443095_INS [dm3] 2R_9555590_INS [dm6]	G	GTTTCTCAG	7.891e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	16248634	2L_16248634_SNP [dm3] 2L_16248634_SNP [dm6]	G	T	7.891e^-4	0.935	SYNONYMOUS_CODING PRL-1
2L	9572272	2L_9572272_SNP [dm3] 2L_9572272_SNP [dm6]	T	C	7.897e^-4	0.935	SYNONYMOUS_CODING CG3838
2R	16485385	2R_16485385_SNP [dm3] 2R_20597880_SNP [dm6]	C	T	7.912e^-4	0.935	INTRON bl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11679494	3L_11679494_SNP [dm3] 3L_11686394_SNP [dm6]	A	G	7.925e^-4	0.935	INTRON Sug
2R	19488736	2R_19488736_SNP [dm3] 2R_23601213_SNP [dm6]	A	T	7.942e^-4	0.935	UTR_5_PRIME IM18 UTR_3_PRIME CG10332 UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11556488	3R_11556488_DEL [dm3] 3R_15730766_DEL [dm6]	CTGTAC	C	7.953e^-4	0.935	UPSTREAM CG34274 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10181732	2L_10181732_SNP [dm3] 2L_10181732_SNP [dm6]	T	A	7.988e^-4	0.935	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	3661575	3L_3661575_SNP [dm3] 3L_3661575_SNP [dm6]	G	A	8.007e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	527302	2L_527302_INS [dm3] 2L_527302_INS [dm6]	T	TTTGT	8.011e^-4	0.935	INTRON ush	regulatory region REDfly_CRMs
2L	2657585	2L_2657585_SNP [dm3] 2L_2657585_SNP [dm6]	A	T	8.015e^-4	0.935	DOWNSTREAM Prosbeta4R2 INTERGENIC
2R	5738512	2R_5738512_SNP [dm3] 2R_9851007_SNP [dm6]	C	A	8.015e^-4	0.935	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
3R	17353858	3R_17353858_SNP [dm3] 3R_21528136_SNP [dm6]	T	C	8.020e^-4	0.935	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	13048844	3L_13048844_SNP [dm3] 3L_13055744_SNP [dm6]	A	C	8.023e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6275108	3L_6275108_SNP [dm3] 3L_6282008_SNP [dm6]	T	A	8.027e^-4	0.935	INTERGENIC
2L	9371700	2L_9371700_SNP [dm3] 2L_9371700_SNP [dm6]	G	T	8.038e^-4	0.935	UTR_3_PRIME Shawl UPSTREAM CR43865
X	3563411	X_3563411_SNP [dm3] X_3669378_SNP [dm6]	C	T	8.038e^-4	0.935	SYNONYMOUS_CODING Parg DOWNSTREAM Ilp7
3R	27033300	3R_27033300_SNP [dm3] 3R_31207578_SNP [dm6]	T	A	8.047e^-4	0.935	INTRON chp
3L	16967013	3L_16967013_SNP [dm3] 3L_16973913_SNP [dm6]	C	G	8.061e^-4	0.935	INTRON Exn
X	11068962	X_11068962_SNP [dm3] X_11174929_SNP [dm6]	T	C	8.063e^-4	0.935	INTERGENIC
3L	15091397	3L_15091397_SNP [dm3] 3L_15098297_SNP [dm6]	C	T	8.065e^-4	0.935	UTR_5_PRIME CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3215831	2R_3215831_SNP [dm3] 2R_7328326_SNP [dm6]	A	G	8.065e^-4	0.935	INTRON CR45129 & 1 other
2R	3215934	2R_3215934_SNP [dm3] 2R_7328429_SNP [dm6]	T	G	8.065e^-4	0.935	INTRON CR45129 & 1 other
2R	3215939	2R_3215939_SNP [dm3] 2R_7328434_SNP [dm6]	A	T	8.065e^-4	0.935	INTRON CR45129 & 1 other
3L	18204873	3L_18204873_SNP [dm3] 3L_18211773_SNP [dm6]	G	A	8.092e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	11453472	3R_11453472_DEL [dm3] 3R_15627750_DEL [dm6]	TT	T	8.095e^-4	0.935	INTERGENIC
2L	15549095	2L_15549095_SNP [dm3] 2L_15549095_SNP [dm6]	T	A	8.111e^-4	0.935	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
2L	5402201	2L_5402201_SNP [dm3] 2L_5402201_SNP [dm6]	A	C	8.118e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	8898186	2R_8898186_SNP [dm3] 2R_13010681_SNP [dm6]	C	A	8.118e^-4	0.935	INTERGENIC
2L	10284552	2L_10284552_SNP [dm3] 2L_10284552_SNP [dm6]	C	T	8.119e^-4	0.935	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4302490	X_4302490_DEL [dm3] X_4408457_DEL [dm6]	ATGATAGATTC...	A	8.121e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4302517	X_4302517_SNP [dm3] X_4408484_SNP [dm6]	C	T	8.121e^-4	0.935	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	3910182	2R_3910182_SNP [dm3] 2R_8022677_SNP [dm6]	C	T	8.133e^-4	0.935	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18219840	2R_18219840_SNP [dm3] 2R_22332335_SNP [dm6]	A	G	8.147e^-4	0.935	NON_SYNONYMOUS_CODING pgc UPSTREAM T3dh & 1 other
2R	4611776	2R_4611776_SNP [dm3] 2R_8724271_SNP [dm6]	A	G	8.147e^-4	0.935	UTR_5_PRIME gcl UPSTREAM CG14767 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	4612216	2R_4612216_SNP [dm3] 2R_8724711_SNP [dm6]	G	T	8.147e^-4	0.935	UPSTREAM CG14767 & 1 other INTRON gcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4612218	2R_4612218_SNP [dm3] 2R_8724713_SNP [dm6]	C	T	8.147e^-4	0.935	UPSTREAM CG14767 & 1 other INTRON gcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4613928	2R_4613928_DEL [dm3] 2R_8726423_DEL [dm6]	CC	C	8.147e^-4	0.935	INTRON gcl
2R	4614060	2R_4614060_SNP [dm3] 2R_8726555_SNP [dm6]	A	C	8.147e^-4	0.935	INTRON gcl
2R	4614092	2R_4614092_DEL [dm3] 2R_8726587_DEL [dm6]	AAAAAA	A	8.147e^-4	0.935	INTRON gcl
2R	4616251	2R_4616251_SNP [dm3] 2R_8728746_SNP [dm6]	A	T	8.147e^-4	0.935	UTR_3_PRIME gcl DOWNSTREAM CG30356 & 1 other
2R	4616316	2R_4616316_SNP [dm3] 2R_8728811_SNP [dm6]	T	C	8.147e^-4	0.935	UTR_3_PRIME gcl DOWNSTREAM CG30356 & 1 other
2R	6239690	2R_6239690_SNP [dm3] 2R_10352185_SNP [dm6]	G	A	8.147e^-4	0.935	UPSTREAM CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
3R	26584200	3R_26584200_SNP [dm3] 3R_30758478_SNP [dm6]	C	T	8.147e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1919215	2L_1919215_SNP [dm3] 2L_1919215_SNP [dm6]	A	C	8.152e^-4	0.935	INTRON CG7337
3L	6325028	3L_6325028_SNP [dm3] 3L_6331928_SNP [dm6]	A	T	8.156e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_chinmo
3L	6325042	3L_6325042_SNP [dm3] 3L_6331942_SNP [dm6]	G	A	8.156e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_chinmo
3L	6325524	3L_6325524_SNP [dm3] 3L_6332424_SNP [dm6]	G	A	8.156e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_chinmo
2R	11389089	2R_11389089_SNP [dm3] 2R_15501584_SNP [dm6]	A	G	8.178e^-4	0.935	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
3L	5514661	3L_5514661_SNP [dm3] 3L_5521561_SNP [dm6]	C	A	8.179e^-4	0.935	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5345998	3L_5345998_SNP [dm3] 3L_5352898_SNP [dm6]	T	C	8.182e^-4	0.935	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10793004	2R_10793004_SNP [dm3] 2R_14905499_SNP [dm6]	C	T	8.199e^-4	0.935	INTRON CG10249	TF binding site mE1_TFBS_chinmo
2R	10793012	2R_10793012_SNP [dm3] 2R_14905507_SNP [dm6]	T	A	8.199e^-4	0.935	SPLICE_SITE_REGION CG10249 INTRON CG10249	TF binding site mE1_TFBS_chinmo
3R	18903945	3R_18903945_SNP [dm3] 3R_23078223_SNP [dm6]	G	T	8.199e^-4	0.935	INTRON CG13830
X	9228222	X_9228222_SNP [dm3] X_9334189_SNP [dm6]	G	T	8.201e^-4	0.935	INTRON CG34449
X	15855230	X_15855230_SNP [dm3] X_15961197_SNP [dm6]	A	G	8.207e^-4	0.935	INTRON mmd
3R	14393307	3R_14393307_SNP [dm3] 3R_18567585_SNP [dm6]	C	T	8.210e^-4	0.935	INTERGENIC
2L	13683074	2L_13683074_SNP [dm3] 2L_13683074_SNP [dm6]	G	C	8.214e^-4	0.935	INTRON CG31814
2L	20595789	2L_20595789_SNP [dm3] 2L_20595789_SNP [dm6]	C	T	8.252e^-4	0.935	INTRON CR44909
3R	8513331	3R_8513331_SNP [dm3] 3R_12687609_SNP [dm6]	G	A	8.254e^-4	0.935	INTRON kar	TF binding site mE1_TFBS_chinmo
2L	2505319	2L_2505319_SNP [dm3] 2L_2505319_SNP [dm6]	G	A	8.263e^-4	0.935	INTERGENIC
X	6280552	X_6280552_SNP [dm3] X_6386519_SNP [dm6]	A	C	8.270e^-4	0.935	INTERGENIC
X	2575937	X_2575937_SNP [dm3] X_2681904_SNP [dm6]	G	A	8.273e^-4	0.935	UPSTREAM HLH3B DOWNSTREAM CG2652 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3124843	3L_3124843_SNP [dm3] 3L_3124843_SNP [dm6]	C	A	8.275e^-4	0.935	INTRON prominin-like
2L	8745786	2L_8745786_SNP [dm3] 2L_8745786_SNP [dm6]	T	A	8.294e^-4	0.935	INTERGENIC
2R	12679790	2R_12679790_SNP [dm3] 2R_16792285_SNP [dm6]	T	A	8.298e^-4	0.935	UTR_3_PRIME CG5522 UPSTREAM CG15919 DOWNSTREAM CG5522 & 1 other
3L	15089954	3L_15089954_SNP [dm3] 3L_15096854_SNP [dm6]	A	C	8.301e^-4	0.935	SYNONYMOUS_CODING Aats-gly	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14976570	2R_14976570_SNP [dm3] 2R_19089065_SNP [dm6]	G	A	8.307e^-4	0.935	INTRON 5-HT1A
3L	6446823	3L_6446823_SNP [dm3] 3L_6453723_SNP [dm6]	G	A	8.321e^-4	0.935	INTRON CG42747
2R	18117876	2R_18117876_SNP [dm3] 2R_22230371_SNP [dm6]	A	C	8.325e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13873986	X_13873986_SNP [dm3] X_13979953_SNP [dm6]	A	T	8.328e^-4	0.935	INTRON mamo
2R	5838539	2R_5838539_SNP [dm3] 2R_9951034_SNP [dm6]	C	A	8.328e^-4	0.935	INTRON Mef2
2L	16405441	2L_16405441_SNP [dm3] 2L_16405441_SNP [dm6]	G	A	8.339e^-4	0.935	NON_SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	10859336	X_10859336_SNP [dm3] X_10965303_SNP [dm6]	C	A	8.360e^-4	0.935	INTRON C901	TF binding site mE1_TFBS_chinmo
2L	3619387	2L_3619387_SNP [dm3] 2L_3619387_SNP [dm6]	G	A	8.365e^-4	0.935	SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	3225573	2R_3225573_SNP [dm3] 2R_7338068_SNP [dm6]	G	A	8.384e^-4	0.935	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	3225751	2R_3225751_SNP [dm3] 2R_7338246_SNP [dm6]	T	G	8.384e^-4	0.935	SPLICE_SITE_REGION Dscam1 INTRON Dscam1
2R	3226552	2R_3226552_SNP [dm3] 2R_7339047_SNP [dm6]	A	G	8.384e^-4	0.935	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	3226603	2R_3226603_SNP [dm3] 2R_7339098_SNP [dm6]	G	C	8.384e^-4	0.935	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3L	10894960	3L_10894960_SNP [dm3] 3L_10901860_SNP [dm6]	A	T	8.389e^-4	0.935	INTERGENIC
3L	10894973	3L_10894973_SNP [dm3] 3L_10901873_SNP [dm6]	A	T	8.389e^-4	0.935	INTERGENIC
2L	11701285	2L_11701285_SNP [dm3] 2L_11701285_SNP [dm6]	T	C	8.394e^-4	0.935	INTERGENIC
3L	18941962	3L_18941962_SNP [dm3] 3L_18948862_SNP [dm6]	A	T	8.404e^-4	0.935	INTERGENIC
3L	11679538	3L_11679538_SNP [dm3] 3L_11686438_SNP [dm6]	T	A	8.425e^-4	0.935	INTRON Sug
3L	11679543	3L_11679543_SNP [dm3] 3L_11686443_SNP [dm6]	T	G	8.425e^-4	0.935	INTRON Sug
X	340277	X_340277_SNP [dm3] X_446244_SNP [dm6]	G	C	8.458e^-4	0.935	INTRON CG32816
3L	11640921	3L_11640921_SNP [dm3] 3L_11647821_SNP [dm6]	G	A	8.461e^-4	0.935	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16210431	2L_16210431_SNP [dm3] 2L_16210431_SNP [dm6]	G	T	8.475e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3671644	2L_3671644_SNP [dm3] 2L_3671644_SNP [dm6]	T	G	8.480e^-4	0.935	INTRON CG34340
2L	9366702	2L_9366702_SNP [dm3] 2L_9366702_SNP [dm6]	T	G	8.501e^-4	0.935	UPSTREAM CG34181 INTERGENIC
2L	4109175	2L_4109175_DEL [dm3] 2L_4109175_DEL [dm6]	CACGGGT	A	8.501e^-4	0.935	INTRON ed
2R	4611101	2R_4611101_SNP [dm3] 2R_8723596_SNP [dm6]	A	C	8.505e^-4	0.935	UPSTREAM gcl & 1 other INTRON CG14767	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12325317	2R_12325317_SNP [dm3] 2R_16437812_SNP [dm6]	C	T	8.506e^-4	0.935	INTERGENIC
2L	1554613	2L_1554613_SNP [dm3] 2L_1554613_SNP [dm6]	G	A	8.511e^-4	0.935	UPSTREAM haf INTERGENIC
2L	1554655	2L_1554655_DEL [dm3] 2L_1554655_DEL [dm6]	TATTTT	A	8.511e^-4	0.935	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12399848	2R_12399848_SNP [dm3] 2R_16512343_SNP [dm6]	T	C	8.518e^-4	0.935	INTRON Sema-2a
X	3646837	X_3646837_SNP [dm3] X_3752804_SNP [dm6]	C	T	8.526e^-4	0.935	INTRON tlk
3L	6636118	3L_6636118_SNP [dm3] 3L_6643018_SNP [dm6]	A	T	8.534e^-4	0.935	DOWNSTREAM CR45239 INTERGENIC
3L	7101041	3L_7101041_SNP [dm3] 3L_7107941_SNP [dm6]	C	G	8.535e^-4	0.935	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13688939	X_13688939_SNP [dm3] X_13794906_SNP [dm6]	T	C	8.536e^-4	0.935	INTRON inaE
3L	19645117	3L_19645117_SNP [dm3] 3L_19652017_SNP [dm6]	A	T	8.536e^-4	0.935	INTRON tey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7099129	3L_7099129_SNP [dm3] 3L_7106029_SNP [dm6]	T	C	8.547e^-4	0.935	INTRON form3
2L	6956912	2L_6956912_INS [dm3] 2L_6956912_INS [dm6]	T	TT	8.558e^-4	0.935	UTR_5_PRIME CG13775 UPSTREAM CG3430 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	13250532	3L_13250532_SNP [dm3] 3L_13257432_SNP [dm6]	C	G	8.561e^-4	0.935	INTRON caps
2R	4598329	2R_4598329_SNP [dm3] 2R_8710824_SNP [dm6]	A	G	8.570e^-4	0.935	DOWNSTREAM PGRP-SC1a INTRON CG14743
3R	16840240	3R_16840240_SNP [dm3] 3R_21014518_SNP [dm6]	T	C	8.582e^-4	0.935	UTR_3_PRIME Calx DOWNSTREAM Calx
2R	14273919	2R_14273919_SNP [dm3] 2R_18386414_SNP [dm6]	A	T	8.588e^-4	0.935	UPSTREAM CG15067 & 1 other INTERGENIC
3R	5145910	3R_5145910_SNP [dm3] 3R_9320188_SNP [dm6]	A	G	8.610e^-4	0.935	INTRON CG8861
X	15429105	X_15429105_SNP [dm3] X_15535072_SNP [dm6]	C	T	8.626e^-4	0.935	INTRON Ac13E
3L	3435434	3L_3435434_INS [dm3] 3L_3435434_INS [dm6]	C	CGTCTCCATCTCC...	8.639e^-4	0.935	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
2R	7067524	2R_7067524_SNP [dm3] 2R_11180019_SNP [dm6]	C	A	8.641e^-4	0.935	INTRON shn
3L	10686290	3L_10686290_SNP [dm3] 3L_10693190_SNP [dm6]	C	T	8.671e^-4	0.935	UTR_3_PRIME CG6463 UPSTREAM CG33493 DOWNSTREAM CG11811	TF binding site mE1_TFBS_sens
2R	16523603	2R_16523603_SNP [dm3] 2R_20636098_SNP [dm6]	T	A	8.679e^-4	0.935	UPSTREAM CG13436 INTRON rig	TF binding site mE1_TFBS_cad
3L	6562154	3L_6562154_SNP [dm3] 3L_6569054_SNP [dm6]	T	C	8.684e^-4	0.935	INTRON CG18769 & 1 other
3L	19068382	3L_19068382_SNP [dm3] 3L_19075282_SNP [dm6]	T	G	8.687e^-4	0.935	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7636032	2L_7636032_SNP [dm3] 2L_7636032_SNP [dm6]	A	T	8.736e^-4	0.935	UPSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18139868	3R_18139868_SNP [dm3] 3R_22314146_SNP [dm6]	A	G	8.753e^-4	0.935	INTRON CG34377
3L	6325397	3L_6325397_SNP [dm3] 3L_6332297_SNP [dm6]	A	T	8.759e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_chinmo
X	16171720	X_16171720_SNP [dm3] X_16277687_SNP [dm6]	A	T	8.766e^-4	0.935	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7043067	2R_7043067_SNP [dm3] 2R_11155562_SNP [dm6]	A	G	8.780e^-4	0.935	DOWNSTREAM CG13230 INTRON CG13229
2L	12371265	2L_12371265_SNP [dm3] 2L_12371265_SNP [dm6]	T	A	8.818e^-4	0.935	INTRON bru-2
X	13663385	X_13663385_SNP [dm3] X_13769352_SNP [dm6]	C	T	8.818e^-4	0.935	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_inv
X	13663424	X_13663424_SNP [dm3] X_13769391_SNP [dm6]	C	T	8.818e^-4	0.935	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_inv
X	7453023	X_7453023_SNP [dm3] X_7558990_SNP [dm6]	A	T	8.839e^-4	0.935	INTERGENIC
3R	10943001	3R_10943001_SNP [dm3] 3R_15117279_SNP [dm6]	A	G	8.848e^-4	0.935	INTRON CG42788	TF binding site mE1_TFBS_sens
2R	18791234	2R_18791234_SNP [dm3] 2R_22903711_SNP [dm6]	A	G	8.875e^-4	0.935	INTRON nahoda
3L	18647779	3L_18647779_SNP [dm3] 3L_18654679_SNP [dm6]	G	A	8.882e^-4	0.935	INTRON MYPT-75D
3R	15280055	3R_15280055_SNP [dm3] 3R_19454333_SNP [dm6]	C	T	8.885e^-4	0.935	INTRON CG31221
3L	10894834	3L_10894834_SNP [dm3] 3L_10901734_SNP [dm6]	A	G	8.892e^-4	0.935	INTERGENIC
3L	10894836	3L_10894836_SNP [dm3] 3L_10901736_SNP [dm6]	A	T	8.892e^-4	0.935	INTERGENIC
3L	18668138	3L_18668138_DEL [dm3] 3L_18675038_DEL [dm6]	CTTAGTC	C	8.894e^-4	0.935	UPSTREAM GNBP1 INTRON GNBP2	TF binding site mE1_TFBS_cad
3R	6269965	3R_6269965_SNP [dm3] 3R_10444243_SNP [dm6]	T	C	8.904e^-4	0.935	INTERGENIC
X	5985396	X_5985396_SNP [dm3] X_6091363_SNP [dm6]	G	A	8.905e^-4	0.935	START_GAINED Nep1 & 1 other UTR_5_PRIME Nep1 & 1 other UPSTREAM Nep1 DOWNSTREAM CR44959	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25320929	3R_25320929_SNP [dm3] 3R_29495207_SNP [dm6]	A	C	8.908e^-4	0.935	DOWNSTREAM Diedel INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	11893038	3L_11893038_SNP [dm3] 3L_11899938_SNP [dm6]	C	T	8.963e^-4	0.935	INTRON CG44837 EXON CR43624
3L	823939	3L_823939_SNP [dm3] 3L_823939_SNP [dm6]	T	G	8.974e^-4	0.935	INTERGENIC
2L	16373556	2L_16373556_SNP [dm3] 2L_16373556_SNP [dm6]	A	G	8.979e^-4	0.935	INTERGENIC
3L	11683780	3L_11683780_SNP [dm3] 3L_11690680_SNP [dm6]	C	T	8.979e^-4	0.935	UPSTREAM CG14135 DOWNSTREAM Sug INTRON Pallidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16382860	2L_16382860_SNP [dm3] 2L_16382860_SNP [dm6]	T	C	8.983e^-4	0.935	INTERGENIC
X	13742990	X_13742990_SNP [dm3] X_13848957_SNP [dm6]	G	A	8.983e^-4	0.935	UTR_3_PRIME mamo
2L	6956019	2L_6956019_SNP [dm3] 2L_6956019_SNP [dm6]	T	G	8.989e^-4	0.935	NON_SYNONYMOUS_CODING CG13775 UPSTREAM CG3430	TF binding site BDTNP1_TFBS_twi
2R	19175093	2R_19175093_SNP [dm3] 2R_23287570_SNP [dm6]	C	T	9.003e^-4	0.935	INTERGENIC
3L	6324942	3L_6324942_SNP [dm3] 3L_6331842_SNP [dm6]	T	A	9.007e^-4	0.935	INTRON CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3090801	2R_3090801_SNP [dm3] 2R_7203296_SNP [dm6]	T	C	9.026e^-4	0.935	INTRON pk
3R	10192330	3R_10192330_INS [dm3] 3R_14366608_INS [dm6]	T	TT	9.034e^-4	0.935	INTRON NK7.1	TF binding site mE1_TFBS_cnc
3L	9494177	3L_9494177_SNP [dm3] 3L_9501077_SNP [dm6]	T	G	9.044e^-4	0.935	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8794481	3L_8794481_INS [dm3] 3L_8801381_INS [dm6]	C	CC	9.076e^-4	0.935	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
3R	10267204	3R_10267204_DEL [dm3] 3R_14441482_DEL [dm6]	GTACAACTTCTA...	G	9.084e^-4	0.935	INTRON cv-c
2R	3257490	2R_3257490_SNP [dm3] 2R_7369985_SNP [dm6]	C	A	9.111e^-4	0.935	INTRON Dscam1
2R	18454267	2R_18454267_SNP [dm3] 2R_22566762_SNP [dm6]	T	A	9.113e^-4	0.935	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7350105	3R_7350105_SNP [dm3] 3R_11524383_SNP [dm6]	G	A	9.122e^-4	0.935	INTERGENIC
3L	6633195	3L_6633195_SNP [dm3] 3L_6640095_SNP [dm6]	T	C	9.130e^-4	0.935	UPSTREAM CR45238 INTERGENIC
2R	8494574	2R_8494574_SNP [dm3] 2R_12607069_SNP [dm6]	A	G	9.132e^-4	0.935	INTRON Amph
2L	9602959	2L_9602959_SNP [dm3] 2L_9602959_SNP [dm6]	T	G	9.164e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4616788	2R_4616788_SNP [dm3] 2R_8729283_SNP [dm6]	C	T	9.180e^-4	0.935	SYNONYMOUS_CODING CG30356 DOWNSTREAM stmA & 1 other
2R	4619160	2R_4619160_SNP [dm3] 2R_8731655_SNP [dm6]	C	T	9.180e^-4	0.935	INTRON stmA	TF binding site mE1_TFBS_sens
3R	860116	3R_860116_SNP [dm3] 3R_5034394_SNP [dm6]	T	G	9.187e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	5730387	2R_5730387_SNP [dm3] 2R_9842882_SNP [dm6]	G	A	9.192e^-4	0.935	UPSTREAM Vamp7 & 1 other INTRON CG1667	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19958966	3R_19958966_SNP [dm3] 3R_24133244_SNP [dm6]	T	C	9.199e^-4	0.935	SYNONYMOUS_CODING Tsc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19959166	3R_19959166_SNP [dm3] 3R_24133444_SNP [dm6]	G	C	9.199e^-4	0.935	SYNONYMOUS_CODING Tsc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14976540	2R_14976540_SNP [dm3] 2R_19089035_SNP [dm6]	T	A	9.222e^-4	0.935	INTRON 5-HT1A
3L	6636077	3L_6636077_SNP [dm3] 3L_6642977_SNP [dm6]	G	A	9.228e^-4	0.935	DOWNSTREAM CR45239 INTERGENIC
3L	10365218	3L_10365218_SNP [dm3] 3L_10372118_SNP [dm6]	A	G	9.234e^-4	0.935	INTERGENIC
2L	6975206	2L_6975206_SNP [dm3] 2L_6975206_SNP [dm6]	T	A	9.254e^-4	0.935	INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16483330	2L_16483330_SNP [dm3] 2L_16483330_SNP [dm6]	G	A	9.263e^-4	0.935	INTRON dac	regulatory region REDfly_CRMs
X	1005142	X_1005142_SNP [dm3] X_1111109_SNP [dm6]	A	C	9.269e^-4	0.935	INTRON CG3655
3R	18690738	3R_18690738_SNP [dm3] 3R_22865016_SNP [dm6]	C	G	9.276e^-4	0.935	INTERGENIC
2L	2974795	2L_2974795_SNP [dm3] 2L_2974795_SNP [dm6]	A	C	9.288e^-4	0.935	UTR_3_PRIME gammaTub23C DOWNSTREAM CG9641
2R	9659409	2R_9659409_SNP [dm3] 2R_13771904_SNP [dm6]	G	T	9.288e^-4	0.935	INTRON Cpr50Ca
X	4315424	X_4315424_SNP [dm3] X_4421391_SNP [dm6]	G	C	9.293e^-4	0.935	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4315511	X_4315511_SNP [dm3] X_4421478_SNP [dm6]	C	T	9.293e^-4	0.935	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	4315530	X_4315530_SNP [dm3] X_4421497_SNP [dm6]	G	T	9.293e^-4	0.935	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	13937747	3L_13937747_SNP [dm3] 3L_13944647_SNP [dm6]	G	T	9.295e^-4	0.935	INTRON CG32137
2L	16487101	2L_16487101_SNP [dm3] 2L_16487101_SNP [dm6]	C	T	9.319e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17584366	3R_17584366_SNP [dm3] 3R_21758644_SNP [dm6]	C	A	9.322e^-4	0.935	UPSTREAM CG42335 DOWNSTREAM CG31198 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	4608035	3L_4608035_SNP [dm3] 3L_4608035_SNP [dm6]	G	A	9.323e^-4	0.935	INTRON Src64B
X	11112566	X_11112566_SNP [dm3] X_11218533_SNP [dm6]	A	G	9.342e^-4	0.935	DOWNSTREAM CG44422 INTERGENIC
3R	16012761	3R_16012761_SNP [dm3] 3R_20187039_SNP [dm6]	C	A	9.343e^-4	0.935	INTERGENIC
X	22113164	X_22113164_SNP [dm3] X_22711328_SNP [dm6]	G	A	9.347e^-4	0.935	INTRON CR44997	transposable element FlyBase
2L	6910905	2L_6910905_SNP [dm3] 2L_6910905_SNP [dm6]	A	T	9.347e^-4	0.935	UTR_3_PRIME Rat1 DOWNSTREAM Wee1
2L	6594142	2L_6594142_SNP [dm3] 2L_6594142_SNP [dm6]	C	T	9.354e^-4	0.935	INTRON CG11319	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

pupae3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results