DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.371e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	2.7305	0.0984

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1157 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8809578	3L_8809578_SNP [dm3] 3L_8816478_SNP [dm6]	T	A	7.812e^-6	0.866	INTERGENIC
2R	9610105	2R_9610105_DEL [dm3] 2R_13722600_DEL [dm6]	GG	G	8.761e^-6	0.866	INTRON fas
2L	2406132	2L_2406132_SNP [dm3] 2L_2406132_SNP [dm6]	G	C	1.579e^-5	0.866	INTRON VGlut	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12838031	X_12838031_SNP [dm3] X_12943998_SNP [dm6]	A	T	1.858e^-5	0.866	INTRON fne
2R	16093251	2R_16093251_SNP [dm3] 2R_20205746_SNP [dm6]	G	A	2.136e^-5	0.866	INTERGENIC
2R	16093261	2R_16093261_SNP [dm3] 2R_20205756_SNP [dm6]	G	A	2.136e^-5	0.866	INTERGENIC
2R	16093268	2R_16093268_SNP [dm3] 2R_20205763_SNP [dm6]	G	T	2.136e^-5	0.866	INTERGENIC
2R	16093269	2R_16093269_SNP [dm3] 2R_20205764_SNP [dm6]	C	A	2.136e^-5	0.866	INTERGENIC
2R	18774201	2R_18774201_SNP [dm3] 2R_22886678_SNP [dm6]	A	T	2.170e^-5	0.866	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18522322	3R_18522322_SNP [dm3] 3R_22696600_SNP [dm6]	T	C	2.289e^-5	0.866	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16844522	2R_16844522_SNP [dm3] 2R_20957017_SNP [dm6]	T	A	2.831e^-5	0.866	INTRON hbn	TF binding site BDTNP1_TFBS_prd
2R	4203646	2R_4203646_SNP [dm3] 2R_8316141_SNP [dm6]	C	G	2.875e^-5	0.866	INTERGENIC
2R	11911376	2R_11911376_SNP [dm3] 2R_16023871_SNP [dm6]	A	G	3.021e^-5	0.866	DOWNSTREAM casp INTRON CG8399
3R	16018144	3R_16018144_SNP [dm3] 3R_20192422_SNP [dm6]	C	T	3.191e^-5	0.866	INTERGENIC
2L	16665677	2L_16665677_SNP [dm3] 2L_16665677_SNP [dm6]	G	C	3.611e^-5	0.866	INTRON Trpgamma	transposable element FlyBase
3L	13971850	3L_13971850_SNP [dm3] 3L_13978750_SNP [dm6]	C	A	3.646e^-5	0.866	UTR_3_PRIME CG17364 DOWNSTREAM Hsc70-1
3L	6649799	3L_6649799_SNP [dm3] 3L_6656699_SNP [dm6]	T	C	3.886e^-5	0.866	INTERGENIC
2L	7390125	2L_7390125_SNP [dm3] 2L_7390125_SNP [dm6]	G	A	4.395e^-5	0.866	SYNONYMOUS_CODING gudu DOWNSTREAM CG5160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4235576	2L_4235576_SNP [dm3] 2L_4235576_SNP [dm6]	A	T	4.528e^-5	0.866	INTERGENIC
3L	14084389	3L_14084389_SNP [dm3] 3L_14091289_SNP [dm6]	T	G	4.967e^-5	0.866	INTERGENIC
2R	15030513	2R_15030513_SNP [dm3] 2R_19143008_SNP [dm6]	T	C	5.758e^-5	0.866	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	5.827e^-5	0.866	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
2L	5248343	2L_5248343_SNP [dm3] 2L_5248343_SNP [dm6]	A	C	5.845e^-5	0.866	INTRON tkv
2L	5248349	2L_5248349_SNP [dm3] 2L_5248349_SNP [dm6]	G	A	5.845e^-5	0.866	INTRON tkv
X	3153646	X_3153646_SNP [dm3] X_3259613_SNP [dm6]	G	C	6.267e^-5	0.866	INTRON dnc
3L	2921006	3L_2921006_SNP [dm3] 3L_2921006_SNP [dm6]	T	C	6.296e^-5	0.866	INTRON Shab
2R	8888926	2R_8888926_SNP [dm3] 2R_13001421_SNP [dm6]	G	A	6.439e^-5	0.866	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8888932	2R_8888932_SNP [dm3] 2R_13001427_SNP [dm6]	G	A	6.439e^-5	0.866	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8323937	2L_8323937_SNP [dm3] 2L_8323937_SNP [dm6]	A	G	6.607e^-5	0.866	INTRON CG7781
2R	18761962	2R_18761962_INS [dm3] 2R_22874439_INS [dm6]	G	TT	6.610e^-5	0.866	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18761970	2R_18761970_SNP [dm3] 2R_22874447_SNP [dm6]	C	T	6.610e^-5	0.866	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16121027	2R_16121027_SNP [dm3] 2R_20233522_SNP [dm6]	G	T	6.628e^-5	0.866	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121033	2R_16121033_SNP [dm3] 2R_20233528_SNP [dm6]	C	T	6.628e^-5	0.866	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121034	2R_16121034_SNP [dm3] 2R_20233529_SNP [dm6]	T	A	6.628e^-5	0.866	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121036	2R_16121036_SNP [dm3] 2R_20233531_SNP [dm6]	C	T	6.628e^-5	0.866	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
3L	14084423	3L_14084423_SNP [dm3] 3L_14091323_SNP [dm6]	G	C	6.753e^-5	0.866	INTERGENIC
X	6455644	X_6455644_SNP [dm3] X_6561611_SNP [dm6]	G	C	6.848e^-5	0.866	INTRON CG34417	TF binding site mE1_TFBS_sens
3R	24514259	3R_24514259_SNP [dm3] 3R_28688537_SNP [dm6]	G	A	7.050e^-5	0.866	INTRON CG9990
3R	11511169	3R_11511169_SNP [dm3] 3R_15685447_SNP [dm6]	A	G	7.213e^-5	0.866	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	4219331	2L_4219331_SNP [dm3] 2L_4219331_SNP [dm6]	C	G	7.224e^-5	0.866	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6329796	2L_6329796_SNP [dm3] 2L_6329796_SNP [dm6]	T	G	7.689e^-5	0.866	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
2R	11911394	2R_11911394_SNP [dm3] 2R_16023889_SNP [dm6]	G	T	8.055e^-5	0.866	DOWNSTREAM casp INTRON CG8399
3R	10600659	3R_10600659_SNP [dm3] 3R_14774937_SNP [dm6]	T	A	8.177e^-5	0.866	INTRON jvl
3R	10600664	3R_10600664_SNP [dm3] 3R_14774942_SNP [dm6]	C	A	8.177e^-5	0.866	INTRON jvl
2R	11911343	2R_11911343_SNP [dm3] 2R_16023838_SNP [dm6]	A	G	8.260e^-5	0.866	SYNONYMOUS_CODING CG8399 DOWNSTREAM casp
3R	15676596	3R_15676596_SNP [dm3] 3R_19850874_SNP [dm6]	G	C	8.501e^-5	0.866	SYNONYMOUS_CODING CG4662
2L	4219131	2L_4219131_SNP [dm3] 2L_4219131_SNP [dm6]	C	T	8.526e^-5	0.866	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219151	2L_4219151_SNP [dm3] 2L_4219151_SNP [dm6]	G	A	8.526e^-5	0.866	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219158	2L_4219158_SNP [dm3] 2L_4219158_SNP [dm6]	T	C	8.526e^-5	0.866	INTRON ft	TF binding site mE1_TFBS_HSA
X	12441976	X_12441976_SNP [dm3] X_12547943_SNP [dm6]	C	A	8.588e^-5	0.866	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11868004	3L_11868004_SNP [dm3] 3L_11874904_SNP [dm6]	G	A	8.598e^-5	0.866	INTRON CG44837
3L	11868099	3L_11868099_SNP [dm3] 3L_11874999_SNP [dm6]	C	A	8.598e^-5	0.866	INTRON CG44837
2R	3868987	2R_3868987_SNP [dm3] 2R_7981482_SNP [dm6]	A	G	8.688e^-5	0.866	INTRON ACC	TF binding site mE1_TFBS_cad
2R	7070027	2R_7070027_SNP [dm3] 2R_11182522_SNP [dm6]	T	G	8.954e^-5	0.866	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7070036	2R_7070036_SNP [dm3] 2R_11182531_SNP [dm6]	G	C	8.954e^-5	0.866	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17744152	3L_17744152_SNP [dm3] 3L_17751052_SNP [dm6]	T	A	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744158	3L_17744158_SNP [dm3] 3L_17751058_SNP [dm6]	G	C	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744163	3L_17744163_SNP [dm3] 3L_17751063_SNP [dm6]	C	T	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744164	3L_17744164_SNP [dm3] 3L_17751064_SNP [dm6]	C	T	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744170	3L_17744170_SNP [dm3] 3L_17751070_SNP [dm6]	A	T	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744173	3L_17744173_SNP [dm3] 3L_17751073_SNP [dm6]	A	G	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744175	3L_17744175_SNP [dm3] 3L_17751075_SNP [dm6]	T	A	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744179	3L_17744179_MNP [dm3] 3L_17751079_MNP [dm6]	GAA	TTC	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744188	3L_17744188_SNP [dm3] 3L_17751088_SNP [dm6]	T	C	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744189	3L_17744189_SNP [dm3] 3L_17751089_SNP [dm6]	A	T	9.191e^-5	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
2L	5248334	2L_5248334_SNP [dm3] 2L_5248334_SNP [dm6]	C	A	9.394e^-5	0.866	INTRON tkv
3R	16863149	3R_16863149_SNP [dm3] 3R_21037427_SNP [dm6]	A	T	9.635e^-5	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
X	2331802	X_2331802_SNP [dm3] X_2437769_SNP [dm6]	T	C	9.781e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17740227	3L_17740227_SNP [dm3] 3L_17747127_SNP [dm6]	G	A	1.005e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3L	17740673	3L_17740673_SNP [dm3] 3L_17747573_SNP [dm6]	C	T	1.005e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
X	4302779	X_4302779_SNP [dm3] X_4408746_SNP [dm6]	A	G	1.024e^-4	0.866	INTRON CR32773
2L	4235634	2L_4235634_SNP [dm3] 2L_4235634_SNP [dm6]	T	C	1.031e^-4	0.866	INTERGENIC
3R	16018246	3R_16018246_INS [dm3] 3R_20192524_INS [dm6]	T	AC	1.031e^-4	0.866	INTERGENIC
3R	16018277	3R_16018277_SNP [dm3] 3R_20192555_SNP [dm6]	T	A	1.031e^-4	0.866	INTERGENIC
2L	7111776	2L_7111776_SNP [dm3] 2L_7111776_SNP [dm6]	C	A	1.039e^-4	0.866	INTRON Pvf3
X	13713305	X_13713305_SNP [dm3] X_13819272_SNP [dm6]	T	A	1.070e^-4	0.866	INTRON Clic
X	3012029	X_3012029_SNP [dm3] X_3117996_SNP [dm6]	C	T	1.071e^-4	0.866	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15967419	3R_15967419_SNP [dm3] 3R_20141697_SNP [dm6]	C	A	1.098e^-4	0.866	INTERGENIC
2R	16693918	2R_16693918_SNP [dm3] 2R_20806413_SNP [dm6]	T	A	1.102e^-4	0.866	INTERGENIC
2L	14340967	2L_14340967_SNP [dm3] 2L_14340967_SNP [dm6]	C	A	1.128e^-4	0.866	DOWNSTREAM CG15286 INTRON CG33090
X	9228222	X_9228222_SNP [dm3] X_9334189_SNP [dm6]	G	T	1.142e^-4	0.866	INTRON CG34449
2R	6201222	2R_6201222_SNP [dm3] 2R_10313717_SNP [dm6]	G	T	1.172e^-4	0.866	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6201283	2R_6201283_SNP [dm3] 2R_10313778_SNP [dm6]	C	T	1.172e^-4	0.866	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5504251	2R_5504251_SNP [dm3] 2R_9616746_SNP [dm6]	T	C	1.232e^-4	0.866	INTRON Mmp2
3L	8472576	3L_8472576_SNP [dm3] 3L_8479476_SNP [dm6]	A	C	1.252e^-4	0.866	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	4451422	2L_4451422_SNP [dm3] 2L_4451422_SNP [dm6]	A	T	1.254e^-4	0.866	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5164757	3L_5164757_SNP [dm3] 3L_5171657_SNP [dm6]	G	A	1.263e^-4	0.866	INTRON shep
3L	17934912	3L_17934912_SNP [dm3] 3L_17941812_SNP [dm6]	T	C	1.276e^-4	0.866	INTRON CG43174
2R	19902815	2R_19902815_SNP [dm3] 2R_24015292_SNP [dm6]	A	T	1.277e^-4	0.866	INTRON CG4324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13577007	X_13577007_SNP [dm3] X_13682974_SNP [dm6]	A	G	1.297e^-4	0.866	UTR_5_PRIME CG11158
3L	5164755	3L_5164755_SNP [dm3] 3L_5171655_SNP [dm6]	A	G	1.323e^-4	0.866	INTRON shep
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	1.324e^-4	0.866	INTRON MYPT-75D
2L	2259386	2L_2259386_SNP [dm3] 2L_2259386_SNP [dm6]	C	T	1.335e^-4	0.866	DOWNSTREAM CR44788 INTERGENIC
2L	2259404	2L_2259404_SNP [dm3] 2L_2259404_SNP [dm6]	T	C	1.335e^-4	0.866	EXON CR44788
2L	2259406	2L_2259406_SNP [dm3] 2L_2259406_SNP [dm6]	C	T	1.335e^-4	0.866	EXON CR44788
2L	2259407	2L_2259407_SNP [dm3] 2L_2259407_SNP [dm6]	T	C	1.335e^-4	0.866	EXON CR44788
2R	8891260	2R_8891260_SNP [dm3] 2R_13003755_SNP [dm6]	C	T	1.335e^-4	0.866	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12605689	3L_12605689_SNP [dm3] 3L_12612589_SNP [dm6]	C	G	1.335e^-4	0.866	INTRON caup
3L	12606083	3L_12606083_SNP [dm3] 3L_12612983_SNP [dm6]	C	T	1.335e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	1.340e^-4	0.866	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4646571	2R_4646571_SNP [dm3] 2R_8759066_SNP [dm6]	T	A	1.356e^-4	0.866	INTRON CG8740	TF binding site mE1_TFBS_cad
X	16234702	X_16234702_SNP [dm3] X_16340669_SNP [dm6]	T	G	1.357e^-4	0.866	DOWNSTREAM Dsp1 INTERGENIC
3L	17934864	3L_17934864_SNP [dm3] 3L_17941764_SNP [dm6]	G	T	1.363e^-4	0.866	INTRON CG43174	TF binding site mE1_TFBS_HSA
2L	8326044	2L_8326044_SNP [dm3] 2L_8326044_SNP [dm6]	C	T	1.364e^-4	0.866	UPSTREAM CG7781 INTERGENIC
X	16234624	X_16234624_SNP [dm3] X_16340591_SNP [dm6]	G	C	1.368e^-4	0.866	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1
2R	16438745	2R_16438745_SNP [dm3] 2R_20551240_SNP [dm6]	G	A	1.377e^-4	0.866	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	12606182	3L_12606182_SNP [dm3] 3L_12613082_SNP [dm6]	A	G	1.406e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
3L	12606207	3L_12606207_SNP [dm3] 3L_12613107_SNP [dm6]	T	A	1.417e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
3L	12606208	3L_12606208_SNP [dm3] 3L_12613108_SNP [dm6]	T	A	1.417e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
2R	16844603	2R_16844603_SNP [dm3] 2R_20957098_SNP [dm6]	T	A	1.420e^-4	0.866	INTRON hbn	TF binding site BDTNP1_TFBS_prd
X	6455411	X_6455411_SNP [dm3] X_6561378_SNP [dm6]	A	G	1.422e^-4	0.866	SYNONYMOUS_CODING CG34417
2L	17529464	2L_17529464_SNP [dm3] 2L_17529464_SNP [dm6]	T	A	1.422e^-4	0.866	UTR_3_PRIME CG15145 UPSTREAM CG15144
3R	18004542	3R_18004542_DEL [dm3] 3R_22178820_DEL [dm6]	TT	T	1.438e^-4	0.866	INTRON SKIP
3R	18004547	3R_18004547_SNP [dm3] 3R_22178825_SNP [dm6]	G	T	1.438e^-4	0.866	INTRON SKIP
2L	4233521	2L_4233521_SNP [dm3] 2L_4233521_SNP [dm6]	A	G	1.459e^-4	0.866	INTERGENIC
3L	17709429	3L_17709429_SNP [dm3] 3L_17716329_SNP [dm6]	C	T	1.477e^-4	0.866	INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4508454	2R_4508454_SNP [dm3] 2R_8620949_SNP [dm6]	G	A	1.488e^-4	0.866	NON_SYNONYMOUS_CODING Cirl DOWNSTREAM Cirl	TF binding site mE1_TFBS_cad
3L	15604377	3L_15604377_SNP [dm3] 3L_15611277_SNP [dm6]	A	T	1.503e^-4	0.866	NON_SYNONYMOUS_CODING CG13449 UPSTREAM CG7650
2L	7462995	2L_7462995_SNP [dm3] 2L_7462995_SNP [dm6]	G	T	1.503e^-4	0.866	UPSTREAM Gr28b INTERGENIC
3R	23574633	3R_23574633_SNP [dm3] 3R_27748911_SNP [dm6]	G	A	1.512e^-4	0.866	DOWNSTREAM Ets98B INTERGENIC
2L	16665679	2L_16665679_SNP [dm3] 2L_16665679_SNP [dm6]	G	T	1.513e^-4	0.866	INTRON Trpgamma	transposable element FlyBase
3L	1272115	3L_1272115_SNP [dm3] 3L_1272115_SNP [dm6]	T	G	1.552e^-4	0.866	INTRON CG9134	TF binding site mE1_TFBS_cad
X	5734955	X_5734955_SNP [dm3] X_5840922_SNP [dm6]	T	C	1.571e^-4	0.866	DOWNSTREAM CG15765 INTERGENIC
X	21907317	X_21907317_SNP [dm3] X_22505481_SNP [dm6]	A	G	1.580e^-4	0.866	INTRON l_1_G0196	TF binding site mE1_TFBS_chinmo
2R	14895499	2R_14895499_SNP [dm3] 2R_19007994_SNP [dm6]	T	A	1.603e^-4	0.866	INTRON tn
3L	17738232	3L_17738232_SNP [dm3] 3L_17745132_SNP [dm6]	G	A	1.604e^-4	0.866	DOWNSTREAM CG6034 INTRON Ccn
3L	12605508	3L_12605508_SNP [dm3] 3L_12612408_SNP [dm6]	T	C	1.611e^-4	0.866	INTRON caup
X	4302610	X_4302610_SNP [dm3] X_4408577_SNP [dm6]	C	G	1.644e^-4	0.866	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6265459	2R_6265459_SNP [dm3] 2R_10377954_SNP [dm6]	C	G	1.645e^-4	0.866	UTR_3_PRIME Ir47a UPSTREAM Ir47b INTRON CG42732
3L	17891927	3L_17891927_SNP [dm3] 3L_17898827_SNP [dm6]	T	C	1.683e^-4	0.866	DOWNSTREAM Prestin INTERGENIC
3L	6372137	3L_6372137_SNP [dm3] 3L_6379037_SNP [dm6]	T	A	1.686e^-4	0.866	INTERGENIC
3L	18986685	3L_18986685_DEL [dm3] 3L_18993585_DEL [dm6]	TC	T	1.690e^-4	0.866	UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	11657056	X_11657056_DEL [dm3] X_11763023_DEL [dm6]	TTAC	T	1.710e^-4	0.866	DOWNSTREAM CG9360 INTRON m
3L	17744182	3L_17744182_DEL [dm3] 3L_17751082_DEL [dm6]	AAA	A	1.714e^-4	0.866	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
2R	8889094	2R_8889094_SNP [dm3] 2R_13001589_SNP [dm6]	T	C	1.723e^-4	0.866	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_sens
3R	18004585	3R_18004585_SNP [dm3] 3R_22178863_SNP [dm6]	A	T	1.726e^-4	0.866	INTRON SKIP
2L	7640467	2L_7640467_SNP [dm3] 2L_7640467_SNP [dm6]	T	G	1.740e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	3925496	2R_3925496_SNP [dm3] 2R_8037991_SNP [dm6]	G	C	1.759e^-4	0.866	INTRON Optix	TF binding site mE1_TFBS_sens
2L	10253470	2L_10253470_SNP [dm3] 2L_10253470_SNP [dm6]	G	A	1.772e^-4	0.866	NON_SYNONYMOUS_CODING Ror
3R	22756672	3R_22756672_SNP [dm3] 3R_26930950_SNP [dm6]	G	A	1.801e^-4	0.866	INTRON sda
3L	17934858	3L_17934858_SNP [dm3] 3L_17941758_SNP [dm6]	G	T	1.805e^-4	0.866	INTRON CG43174	TF binding site mE1_TFBS_HSA
2L	12260858	2L_12260858_SNP [dm3] 2L_12260858_SNP [dm6]	A	T	1.819e^-4	0.866	INTRON aret
2R	13592889	2R_13592889_SNP [dm3] 2R_17705384_SNP [dm6]	G	A	1.846e^-4	0.866	INTRON CG6424
X	5375073	X_5375073_SNP [dm3] X_5481040_SNP [dm6]	T	A	1.855e^-4	0.866	INTRON SPR
2R	8439875	2R_8439875_DEL [dm3] 2R_12552370_DEL [dm6]	CCC	A	1.870e^-4	0.866	INTRON fra
2R	8327115	2R_8327115_INS [dm3] 2R_12439610_INS [dm6]	A	ACGG	1.877e^-4	0.866	INTRON Dyb
3L	18647779	3L_18647779_SNP [dm3] 3L_18654679_SNP [dm6]	G	A	1.895e^-4	0.866	INTRON MYPT-75D
2L	1978438	2L_1978438_SNP [dm3] 2L_1978438_SNP [dm6]	A	G	1.896e^-4	0.866	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5649597	3L_5649597_SNP [dm3] 3L_5656497_SNP [dm6]	A	G	1.916e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649600	3L_5649600_SNP [dm3] 3L_5656500_SNP [dm6]	G	A	1.916e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8155151	3L_8155151_SNP [dm3] 3L_8162051_SNP [dm6]	G	C	1.917e^-4	0.866	INTRON CG13675
2R	18967600	2R_18967600_SNP [dm3] 2R_23080077_SNP [dm6]	T	A	1.928e^-4	0.866	UPSTREAM Gr59a & 1 other INTERGENIC
X	2331776	X_2331776_SNP [dm3] X_2437743_SNP [dm6]	C	T	1.935e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4239145	2L_4239145_SNP [dm3] 2L_4239145_SNP [dm6]	A	T	1.938e^-4	0.866	DOWNSTREAM CR45720 INTERGENIC
3L	12606423	3L_12606423_INS [dm3] 3L_12613323_INS [dm6]	A	AT	1.942e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
X	9273155	X_9273155_SNP [dm3] X_9379122_SNP [dm6]	A	G	1.942e^-4	0.866	INTRON mgl
2L	9777433	2L_9777433_SNP [dm3] 2L_9777433_SNP [dm6]	G	C	1.954e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17739962	3L_17739962_SNP [dm3] 3L_17746862_SNP [dm6]	G	A	1.954e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3L	16823477	3L_16823477_SNP [dm3] 3L_16830377_SNP [dm6]	C	G	1.984e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17904520	3L_17904520_SNP [dm3] 3L_17911420_SNP [dm6]	G	A	1.995e^-4	0.866	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7458538	X_7458538_SNP [dm3] X_7564505_SNP [dm6]	T	C	1.999e^-4	0.866	INTERGENIC
2R	18775847	2R_18775847_SNP [dm3] 2R_22888324_SNP [dm6]	T	G	2.027e^-4	0.866	SYNONYMOUS_CODING Gmer UPSTREAM MED23 DOWNSTREAM asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15680879	3R_15680879_SNP [dm3] 3R_19855157_SNP [dm6]	A	G	2.044e^-4	0.866	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
X	8988674	X_8988674_SNP [dm3] X_9094641_SNP [dm6]	C	G	2.072e^-4	0.866	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6804818	2R_6804818_SNP [dm3] 2R_10917313_SNP [dm6]	A	T	2.085e^-4	0.866	INTERGENIC
2R	6804820	2R_6804820_SNP [dm3] 2R_10917315_SNP [dm6]	T	G	2.085e^-4	0.866	INTERGENIC
X	6093230	X_6093230_SNP [dm3] X_6199197_SNP [dm6]	A	T	2.110e^-4	0.866	UPSTREAM CG32751 DOWNSTREAM CG43090 & 1 other INTERGENIC
2L	8325904	2L_8325904_SNP [dm3] 2L_8325904_SNP [dm6]	A	T	2.116e^-4	0.866	UPSTREAM CG7781 INTERGENIC
X	14927943	X_14927943_SNP [dm3] X_15033910_SNP [dm6]	T	C	2.125e^-4	0.866	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
3R	24088297	3R_24088297_DEL [dm3] 3R_28262575_DEL [dm6]	TTCGGGG	T	2.164e^-4	0.866	DOWNSTREAM CG43125 INTERGENIC
X	19015279	X_19015279_SNP [dm3] X_19121246_SNP [dm6]	G	T	2.169e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	2920465	3L_2920465_INS [dm3] 3L_2920465_INS [dm6]	C	CTATGTATTTGTATTATTC...	2.174e^-4	0.866	INTRON Shab
3L	2920472	3L_2920472_SNP [dm3] 3L_2920472_SNP [dm6]	A	G	2.174e^-4	0.866	INTRON Shab
2L	4425328	2L_4425328_SNP [dm3] 2L_4425328_SNP [dm6]	A	G	2.181e^-4	0.866	INTRON CG15431
2L	4432858	2L_4432858_SNP [dm3] 2L_4432858_SNP [dm6]	C	A	2.181e^-4	0.866	INTRON CG15431
2L	4432862	2L_4432862_SNP [dm3] 2L_4432862_SNP [dm6]	A	C	2.181e^-4	0.866	INTRON CG15431
2L	4432869	2L_4432869_SNP [dm3] 2L_4432869_SNP [dm6]	A	T	2.181e^-4	0.866	INTRON CG15431
2R	3264665	2R_3264665_SNP [dm3] 2R_7377160_SNP [dm6]	C	T	2.181e^-4	0.866	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6099207	X_6099207_SNP [dm3] X_6205174_SNP [dm6]	T	A	2.181e^-4	0.866	INTERGENIC
2L	6972251	2L_6972251_DEL [dm3] 2L_6972251_DEL [dm6]	CTGGGAGTGC	C	2.198e^-4	0.866	UPSTREAM snRNP-U1-70K DOWNSTREAM uif EXON CR43142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10526302	2R_10526302_SNP [dm3] 2R_14638797_SNP [dm6]	C	T	2.208e^-4	0.866	UTR_3_PRIME CG43236 UPSTREAM CG42715 DOWNSTREAM CG43236	TF binding site mE1_TFBS_inv
3L	17739432	3L_17739432_SNP [dm3] 3L_17746332_SNP [dm6]	G	T	2.208e^-4	0.866	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9724105	2L_9724105_SNP [dm3] 2L_9724105_SNP [dm6]	G	T	2.221e^-4	0.866	INTRON Nckx30C
3R	14176682	3R_14176682_SNP [dm3] 3R_18350960_SNP [dm6]	G	C	2.225e^-4	0.866	INTRON CG15803
3R	18016133	3R_18016133_SNP [dm3] 3R_22190411_SNP [dm6]	C	G	2.235e^-4	0.866	INTRON SKIP
3L	12606235	3L_12606235_SNP [dm3] 3L_12613135_SNP [dm6]	G	A	2.240e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
3R	16274790	3R_16274790_SNP [dm3] 3R_20449068_SNP [dm6]	G	A	2.247e^-4	0.866	INTRON Gfrl
2R	4611455	2R_4611455_SNP [dm3] 2R_8723950_SNP [dm6]	A	T	2.289e^-4	0.866	UPSTREAM gcl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	4611497	2R_4611497_SNP [dm3] 2R_8723992_SNP [dm6]	T	A	2.289e^-4	0.866	UPSTREAM gcl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17917290	2R_17917290_SNP [dm3] 2R_22029785_SNP [dm6]	T	A	2.291e^-4	0.866	INTRON CG34370
3R	18004558	3R_18004558_SNP [dm3] 3R_22178836_SNP [dm6]	C	G	2.293e^-4	0.866	INTRON SKIP
2L	4235577	2L_4235577_SNP [dm3] 2L_4235577_SNP [dm6]	C	T	2.300e^-4	0.866	INTERGENIC
X	18555098	X_18555098_INS [dm3] X_18661065_INS [dm6]	C	CCAC	2.324e^-4	0.866	UTR_3_PRIME fu INTRON CG6696	TF binding site mE1_TFBS_chinmo
3L	2921037	3L_2921037_SNP [dm3] 3L_2921037_SNP [dm6]	G	A	2.341e^-4	0.866	INTRON Shab
3R	13466601	3R_13466601_SNP [dm3] 3R_17640879_SNP [dm6]	T	A	2.343e^-4	0.866	INTRON CG43175
2R	5276191	2R_5276191_SNP [dm3] 2R_9388686_SNP [dm6]	T	C	2.346e^-4	0.866	START_GAINED CG13954 UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	17739865	3L_17739865_SNP [dm3] 3L_17746765_SNP [dm6]	C	T	2.369e^-4	0.866	SYNONYMOUS_CODING CG6034 INTRON Ccn
3L	5649567	3L_5649567_SNP [dm3] 3L_5656467_SNP [dm6]	C	T	2.412e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	27018881	3R_27018881_SNP [dm3] 3R_31193159_SNP [dm6]	T	A	2.418e^-4	0.866	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21544892	3R_21544892_INS [dm3] 3R_25719170_INS [dm6]	T	TT	2.423e^-4	0.866	INTRON LpR2
X	16164394	X_16164394_SNP [dm3] X_16270361_SNP [dm6]	A	G	2.442e^-4	0.866	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6649809	3L_6649809_SNP [dm3] 3L_6656709_SNP [dm6]	T	A	2.442e^-4	0.866	INTERGENIC
2L	16082151	2L_16082151_SNP [dm3] 2L_16082151_SNP [dm6]	G	A	2.453e^-4	0.866	DOWNSTREAM beat-Ia INTERGENIC
X	13923955	X_13923955_SNP [dm3] X_14029922_SNP [dm6]	A	T	2.460e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13923970	X_13923970_SNP [dm3] X_14029937_SNP [dm6]	C	G	2.460e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11394479	3R_11394479_SNP [dm3] 3R_15568757_SNP [dm6]	A	T	2.471e^-4	0.866	INTERGENIC
3R	11394563	3R_11394563_INS [dm3] 3R_15568841_INS [dm6]	T	TGAATATATAAT...	2.471e^-4	0.866	INTERGENIC
X	9227993	X_9227993_SNP [dm3] X_9333960_SNP [dm6]	C	T	2.490e^-4	0.866	INTRON CG34449
3R	25244780	3R_25244780_DEL [dm3] 3R_29419058_DEL [dm6]	GT	G	2.522e^-4	0.866	INTRON Ptp99A
2R	7070095	2R_7070095_SNP [dm3] 2R_11182590_SNP [dm6]	A	G	2.528e^-4	0.866	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6174275	2R_6174275_SNP [dm3] 2R_10286770_SNP [dm6]	C	T	2.528e^-4	0.866	DOWNSTREAM CAP INTRON CAP
3R	25077945	3R_25077945_SNP [dm3] 3R_29252223_SNP [dm6]	A	G	2.549e^-4	0.866	UTR_3_PRIME stg	regulatory region REDfly_CRMs
3R	13768080	3R_13768080_SNP [dm3] 3R_17942358_SNP [dm6]	G	A	2.589e^-4	0.866	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15030639	2R_15030639_SNP [dm3] 2R_19143134_SNP [dm6]	C	T	2.599e^-4	0.866	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	9412604	2L_9412604_SNP [dm3] 2L_9412604_SNP [dm6]	A	C	2.605e^-4	0.866	INTRON Shawl
2L	2711022	2L_2711022_SNP [dm3] 2L_2711022_SNP [dm6]	G	A	2.617e^-4	0.866	NON_SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12715151	X_12715151_SNP [dm3] X_12821118_SNP [dm6]	C	T	2.623e^-4	0.866	INTRON Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9588922	2L_9588922_SNP [dm3] 2L_9588922_SNP [dm6]	T	A	2.635e^-4	0.866	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	8750335	2L_8750335_SNP [dm3] 2L_8750335_SNP [dm6]	T	A	2.659e^-4	0.866	INTERGENIC
3R	22756565	3R_22756565_SNP [dm3] 3R_26930843_SNP [dm6]	T	A	2.687e^-4	0.866	INTRON sda
X	7496968	X_7496968_SNP [dm3] X_7602935_SNP [dm6]	C	T	2.694e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2R	18774852	2R_18774852_SNP [dm3] 2R_22887329_SNP [dm6]	A	G	2.700e^-4	0.866	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15711939	3R_15711939_SNP [dm3] 3R_19886217_SNP [dm6]	T	C	2.716e^-4	0.866	DOWNSTREAM ninaE & 1 other INTERGENIC
3R	24415816	3R_24415816_SNP [dm3] 3R_28590094_SNP [dm6]	G	A	2.733e^-4	0.866	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	17705905	3L_17705905_SNP [dm3] 3L_17712805_SNP [dm6]	T	G	2.736e^-4	0.866	INTRON Ccn
2L	6329639	2L_6329639_SNP [dm3] 2L_6329639_SNP [dm6]	A	T	2.739e^-4	0.866	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
3R	9642285	3R_9642285_SNP [dm3] 3R_13816563_SNP [dm6]	C	G	2.746e^-4	0.866	DOWNSTREAM CR43641 EXON CR43642	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22499814	3L_22499814_SNP [dm3] 3L_22506714_SNP [dm6]	T	C	2.747e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10947929	3R_10947929_SNP [dm3] 3R_15122207_SNP [dm6]	G	A	2.749e^-4	0.866	INTRON CG42788
3L	6654702	3L_6654702_SNP [dm3] 3L_6661602_SNP [dm6]	T	C	2.752e^-4	0.866	INTERGENIC
2R	6174260	2R_6174260_SNP [dm3] 2R_10286755_SNP [dm6]	A	T	2.799e^-4	0.866	DOWNSTREAM CAP INTRON CAP
2R	3197299	2R_3197299_SNP [dm3] 2R_7309794_SNP [dm6]	T	G	2.800e^-4	0.866	INTERGENIC
3R	11006717	3R_11006717_SNP [dm3] 3R_15180995_SNP [dm6]	G	A	2.803e^-4	0.866	UPSTREAM Mf INTRON Gyc88E & 1 other
2R	6868937	2R_6868937_SNP [dm3] 2R_10981432_SNP [dm6]	C	T	2.813e^-4	0.866	UTR_3_PRIME luna
2R	13800618	2R_13800618_SNP [dm3] 2R_17913113_SNP [dm6]	T	C	2.822e^-4	0.866	INTRON Elk
2L	2371006	2L_2371006_SNP [dm3] 2L_2371006_SNP [dm6]	A	T	2.834e^-4	0.866	DOWNSTREAM Axud1 INTRON CG3597	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6455613	X_6455613_SNP [dm3] X_6561580_SNP [dm6]	A	T	2.851e^-4	0.866	INTRON CG34417	TF binding site mE1_TFBS_sens
X	6455879	X_6455879_SNP [dm3] X_6561846_SNP [dm6]	T	C	2.851e^-4	0.866	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18126997	2R_18126997_DEL [dm3] 2R_22239492_DEL [dm6]	AA	C	2.856e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15473943	2L_15473943_SNP [dm3] 2L_15473943_SNP [dm6]	A	C	2.865e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
3R	16854972	3R_16854972_SNP [dm3] 3R_21029250_SNP [dm6]	A	G	2.881e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17737778	3L_17737778_SNP [dm3] 3L_17744678_SNP [dm6]	A	G	2.890e^-4	0.866	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2L	11490744	2L_11490744_SNP [dm3] 2L_11490744_SNP [dm6]	G	A	2.906e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6111801	3L_6111801_SNP [dm3] 3L_6118701_SNP [dm6]	C	T	2.956e^-4	0.866	INTRON Ets65A
2R	4647930	2R_4647930_SNP [dm3] 2R_8760425_SNP [dm6]	T	C	2.964e^-4	0.866	DOWNSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11597984	2R_11597984_SNP [dm3] 2R_15710479_SNP [dm6]	G	A	2.985e^-4	0.866	INTERGENIC
2L	5248347	2L_5248347_SNP [dm3] 2L_5248347_SNP [dm6]	A	G	2.986e^-4	0.866	INTRON tkv
2R	8353159	2R_8353159_SNP [dm3] 2R_12465654_SNP [dm6]	T	A	2.993e^-4	0.866	DOWNSTREAM dgt5 & 1 other INTERGENIC
2L	13029990	2L_13029990_SNP [dm3] 2L_13029990_SNP [dm6]	C	T	2.994e^-4	0.866	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2270853	X_2270853_SNP [dm3] X_2376820_SNP [dm6]	A	T	3.007e^-4	0.866	UTR_3_PRIME PsGEF INTRON PsGEF
2L	9811181	2L_9811181_SNP [dm3] 2L_9811181_SNP [dm6]	A	G	3.031e^-4	0.866	INTRON nAChRalpha6
X	21440003	X_21440003_SNP [dm3] X_21568976_SNP [dm6]	G	T	3.037e^-4	0.866	INTERGENIC
2R	9901605	2R_9901605_SNP [dm3] 2R_14014100_SNP [dm6]	A	T	3.049e^-4	0.866	INTRON mam
3L	5927559	3L_5927559_SNP [dm3] 3L_5934459_SNP [dm6]	G	T	3.050e^-4	0.866	NON_SYNONYMOUS_CODING CG33993
2R	15030884	2R_15030884_SNP [dm3] 2R_19143379_SNP [dm6]	A	T	3.069e^-4	0.866	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17740216	3L_17740216_DEL [dm3] 3L_17747116_DEL [dm6]	TA	T	3.072e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3L	17740221	3L_17740221_SNP [dm3] 3L_17747121_SNP [dm6]	G	C	3.072e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3R	9896509	3R_9896509_SNP [dm3] 3R_14070787_SNP [dm6]	C	T	3.077e^-4	0.866	INTRON foxo
3R	11074919	3R_11074919_DEL [dm3] 3R_15249197_DEL [dm6]	AATACAAATA	A	3.082e^-4	0.866	UPSTREAM CG42404 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	17740063	3L_17740063_SNP [dm3] 3L_17746963_SNP [dm6]	C	T	3.087e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
2L	4349985	2L_4349985_SNP [dm3] 2L_4349985_SNP [dm6]	C	G	3.091e^-4	0.866	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	14439449	3R_14439449_SNP [dm3] 3R_18613727_SNP [dm6]	T	C	3.114e^-4	0.866	INTRON qin & 1 other
3L	5649605	3L_5649605_INS [dm3] 3L_5656505_INS [dm6]	G	GTCAG	3.125e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649620	3L_5649620_MNP [dm3] 3L_5656520_MNP [dm6]	CGA	TAT	3.125e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649626	3L_5649626_SNP [dm3] 3L_5656526_SNP [dm6]	A	C	3.125e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17710078	3L_17710078_SNP [dm3] 3L_17716978_SNP [dm6]	G	C	3.162e^-4	0.866	INTRON Ccn
3L	17710080	3L_17710080_SNP [dm3] 3L_17716980_SNP [dm6]	C	G	3.162e^-4	0.866	INTRON Ccn
3R	26495660	3R_26495660_SNP [dm3] 3R_30669938_SNP [dm6]	T	G	3.166e^-4	0.866	INTERGENIC
3L	5649582	3L_5649582_SNP [dm3] 3L_5656482_SNP [dm6]	C	A	3.218e^-4	0.866	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12756123	X_12756123_INS [dm3] X_12862090_INS [dm6]	A	AGAAAA	3.232e^-4	0.866	INTRON Pde9
2R	18957747	2R_18957747_DEL [dm3] 2R_23070224_DEL [dm6]	AAA	A	3.244e^-4	0.866	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2920501	3L_2920501_SNP [dm3] 3L_2920501_SNP [dm6]	G	A	3.283e^-4	0.866	INTRON Shab
3R	27068260	3R_27068260_SNP [dm3] 3R_31242538_SNP [dm6]	A	C	3.284e^-4	0.866	INTRON qless
3L	18955978	3L_18955978_SNP [dm3] 3L_18962878_SNP [dm6]	G	A	3.291e^-4	0.866	INTERGENIC
2L	2664342	2L_2664342_SNP [dm3] 2L_2664342_SNP [dm6]	C	A	3.296e^-4	0.866	UPSTREAM CG9879 INTERGENIC
2L	19097106	2L_19097106_SNP [dm3] 2L_19097106_SNP [dm6]	G	T	3.338e^-4	0.866	INTRON Lim3
3R	18164811	3R_18164811_SNP [dm3] 3R_22339089_SNP [dm6]	A	G	3.368e^-4	0.866	INTRON CG5388	TF binding site mE1_TFBS_Trl
3L	18215011	3L_18215011_SNP [dm3] 3L_18221911_SNP [dm6]	C	T	3.376e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16752458	3L_16752458_SNP [dm3] 3L_16759358_SNP [dm6]	A	C	3.379e^-4	0.866	INTERGENIC
3L	16752459	3L_16752459_SNP [dm3] 3L_16759359_SNP [dm6]	A	G	3.379e^-4	0.866	INTERGENIC
2R	6161552	2R_6161552_SNP [dm3] 2R_10274047_SNP [dm6]	A	T	3.381e^-4	0.866	INTRON CAP
3L	10686258	3L_10686258_SNP [dm3] 3L_10693158_SNP [dm6]	T	C	3.382e^-4	0.866	UTR_5_PRIME CG33493 DOWNSTREAM CG6463 & 1 other	TF binding site mE1_TFBS_sens
3L	15670183	3L_15670183_SNP [dm3] 3L_15677083_SNP [dm6]	C	T	3.402e^-4	0.866	INTERGENIC
X	5749861	X_5749861_DEL [dm3] X_5855828_DEL [dm6]	TT	T	3.409e^-4	0.866	INTERGENIC
2L	8323993	2L_8323993_SNP [dm3] 2L_8323993_SNP [dm6]	G	T	3.416e^-4	0.866	INTRON CG7781
X	2448002	X_2448002_SNP [dm3] X_2553969_SNP [dm6]	C	T	3.419e^-4	0.866	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6161555	2R_6161555_SNP [dm3] 2R_10274050_SNP [dm6]	A	C	3.421e^-4	0.866	INTRON CAP
2L	14381385	2L_14381385_SNP [dm3] 2L_14381385_SNP [dm6]	T	G	3.427e^-4	0.866	UPSTREAM ppk INTERGENIC
2L	15942281	2L_15942281_SNP [dm3] 2L_15942281_SNP [dm6]	A	G	3.444e^-4	0.866	SYNONYMOUS_CODING CG12448 INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
2R	2712441	2R_2712441_SNP [dm3] 2R_6824936_SNP [dm6]	T	A	3.450e^-4	0.866	INTERGENIC
3R	25268104	3R_25268104_SNP [dm3] 3R_29442382_SNP [dm6]	A	G	3.455e^-4	0.866	INTRON Ptp99A
3R	25268109	3R_25268109_SNP [dm3] 3R_29442387_SNP [dm6]	G	A	3.455e^-4	0.866	INTRON Ptp99A
3L	17740457	3L_17740457_SNP [dm3] 3L_17747357_SNP [dm6]	G	C	3.463e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3L	17737621	3L_17737621_SNP [dm3] 3L_17744521_SNP [dm6]	G	A	3.471e^-4	0.866	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	6174270	2R_6174270_SNP [dm3] 2R_10286765_SNP [dm6]	A	C	3.513e^-4	0.866	DOWNSTREAM CAP INTRON CAP
2L	9505835	2L_9505835_SNP [dm3] 2L_9505835_SNP [dm6]	G	T	3.518e^-4	0.866	INTRON CG33298
3L	13391242	3L_13391242_SNP [dm3] 3L_13398142_SNP [dm6]	G	A	3.572e^-4	0.866	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10828881	2L_10828881_SNP [dm3] 2L_10828881_SNP [dm6]	C	G	3.576e^-4	0.866	INTRON Nos
3R	18816099	3R_18816099_SNP [dm3] 3R_22990377_SNP [dm6]	A	G	3.583e^-4	0.866	SYNONYMOUS_CODING Or94b INTRON Nha2	TF binding site mE1_TFBS_cad
3R	26456440	3R_26456440_DEL [dm3] 3R_30630718_DEL [dm6]	ACTA	A	3.601e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13682420	2L_13682420_SNP [dm3] 2L_13682420_SNP [dm6]	A	T	3.607e^-4	0.866	INTRON CG31814
2R	3215940	2R_3215940_SNP [dm3] 2R_7328435_SNP [dm6]	T	G	3.641e^-4	0.866	INTRON CR45129 & 1 other
2L	9968626	2L_9968626_INS [dm3] 2L_9968626_INS [dm6]	A	AA	3.652e^-4	0.866	UTR_3_PRIME RpL13 DOWNSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16274765	3R_16274765_SNP [dm3] 3R_20449043_SNP [dm6]	G	A	3.658e^-4	0.866	INTRON Gfrl
2R	7200118	2R_7200118_SNP [dm3] 2R_11312613_SNP [dm6]	G	A	3.660e^-4	0.866	SPLICE_SITE_REGION nompA INTRON nompA	TF binding site mE1_TFBS_cad
2R	7200124	2R_7200124_SNP [dm3] 2R_11312619_SNP [dm6]	G	A	3.660e^-4	0.866	INTRON nompA	TF binding site mE1_TFBS_cad
3L	15582875	3L_15582875_SNP [dm3] 3L_15589775_SNP [dm6]	C	T	3.676e^-4	0.866	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17697727	3L_17697727_SNP [dm3] 3L_17704627_SNP [dm6]	C	A	3.710e^-4	0.866	INTRON Ccn
3R	19597042	3R_19597042_SNP [dm3] 3R_23771320_SNP [dm6]	T	C	3.728e^-4	0.866	SYNONYMOUS_CODING tst
2R	4502124	2R_4502124_SNP [dm3] 2R_8614619_SNP [dm6]	C	T	3.729e^-4	0.866	UPSTREAM Cirl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6467559	2L_6467559_SNP [dm3] 2L_6467559_SNP [dm6]	T	C	3.730e^-4	0.866	NON_SYNONYMOUS_CODING CG9531 DOWNSTREAM mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10512925	3R_10512925_SNP [dm3] 3R_14687203_SNP [dm6]	C	G	3.730e^-4	0.866	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	443304	3R_443304_DEL [dm3] 3R_4617582_DEL [dm6]	GGTCAACATGG...	G	3.788e^-4	0.866	INTRON 5-HT2A
X	9273151	X_9273151_SNP [dm3] X_9379118_SNP [dm6]	G	C	3.847e^-4	0.866	INTRON mgl
X	9273193	X_9273193_SNP [dm3] X_9379160_SNP [dm6]	T	A	3.847e^-4	0.866	INTRON mgl
X	21129194	X_21129194_SNP [dm3] X_21258167_SNP [dm6]	T	A	3.850e^-4	0.866	INTRON CG32521
3L	6361188	3L_6361188_SNP [dm3] 3L_6368088_SNP [dm6]	T	C	3.857e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	13716699	X_13716699_SNP [dm3] X_13822666_SNP [dm6]	T	C	3.867e^-4	0.866	UPSTREAM Nup93-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14523021	3R_14523021_SNP [dm3] 3R_18697299_SNP [dm6]	G	A	3.877e^-4	0.866	INTERGENIC
3R	14523022	3R_14523022_SNP [dm3] 3R_18697300_SNP [dm6]	G	C	3.877e^-4	0.866	INTERGENIC
2L	1554668	2L_1554668_SNP [dm3] 2L_1554668_SNP [dm6]	T	A	3.877e^-4	0.866	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2943152	3L_2943152_SNP [dm3] 3L_2943152_SNP [dm6]	A	T	3.879e^-4	0.866	INTRON Shab
2R	19518925	2R_19518925_SNP [dm3] 2R_23631402_SNP [dm6]	A	G	3.897e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE
2L	5670502	2L_5670502_SNP [dm3] 2L_5670502_SNP [dm6]	T	C	3.897e^-4	0.866	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4302595	X_4302595_SNP [dm3] X_4408562_SNP [dm6]	T	A	3.900e^-4	0.866	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16855050	3R_16855050_SNP [dm3] 3R_21029328_SNP [dm6]	C	T	3.915e^-4	0.866	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7977706	3L_7977706_SNP [dm3] 3L_7984606_SNP [dm6]	T	C	3.915e^-4	0.866	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	20296427	2R_20296427_SNP [dm3] 2R_24408904_SNP [dm6]	C	T	3.926e^-4	0.866	INTRON SerT	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	16760854	2L_16760854_SNP [dm3] 2L_16760854_SNP [dm6]	C	A	3.927e^-4	0.866	UPSTREAM ppk17 INTERGENIC
2L	5536652	2L_5536652_SNP [dm3] 2L_5536652_SNP [dm6]	C	A	3.928e^-4	0.866	SYNONYMOUS_CODING tomb DOWNSTREAM CG14015 & 1 other	TF binding site mE1_TFBS_chinmo
2L	12212794	2L_12212794_SNP [dm3] 2L_12212794_SNP [dm6]	C	T	3.948e^-4	0.866	INTRON aret
2R	8938793	2R_8938793_SNP [dm3] 2R_13051288_SNP [dm6]	A	G	3.950e^-4	0.866	INTERGENIC
2L	10272976	2L_10272976_SNP [dm3] 2L_10272976_SNP [dm6]	A	T	3.953e^-4	0.866	UPSTREAM trk INTRON Utx
2L	10272978	2L_10272978_SNP [dm3] 2L_10272978_SNP [dm6]	T	A	3.953e^-4	0.866	UPSTREAM trk INTRON Utx
3L	6649814	3L_6649814_SNP [dm3] 3L_6656714_SNP [dm6]	A	C	3.963e^-4	0.866	INTERGENIC
3L	6649841	3L_6649841_SNP [dm3] 3L_6656741_SNP [dm6]	T	G	3.963e^-4	0.866	INTERGENIC
3L	4936033	3L_4936033_SNP [dm3] 3L_4936033_SNP [dm6]	C	T	3.974e^-4	0.866	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4936043	3L_4936043_SNP [dm3] 3L_4936043_SNP [dm6]	T	A	3.974e^-4	0.866	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19488736	2R_19488736_SNP [dm3] 2R_23601213_SNP [dm6]	A	T	3.979e^-4	0.866	UTR_5_PRIME IM18 UTR_3_PRIME CG10332 UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9610150	2R_9610150_SNP [dm3] 2R_13722645_SNP [dm6]	T	C	3.979e^-4	0.866	INTRON fas
2R	19930733	2R_19930733_SNP [dm3] 2R_24043210_SNP [dm6]	A	G	3.988e^-4	0.866	SYNONYMOUS_CODING IntS1
3L	5649702	3L_5649702_SNP [dm3] 3L_5656602_SNP [dm6]	T	C	4.013e^-4	0.866	SPLICE_SITE_REGION lin-28 INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	15707863	3L_15707863_SNP [dm3] 3L_15714763_SNP [dm6]	C	T	4.017e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15707892	3L_15707892_SNP [dm3] 3L_15714792_SNP [dm6]	A	G	4.017e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15707918	3L_15707918_INS [dm3] 3L_15714818_INS [dm6]	A	AA	4.017e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16155306	X_16155306_SNP [dm3] X_16261273_SNP [dm6]	T	C	4.026e^-4	0.866	INTERGENIC
3R	13678351	3R_13678351_SNP [dm3] 3R_17852629_SNP [dm6]	A	C	4.036e^-4	0.866	NON_SYNONYMOUS_CODING tinc
3L	2891082	3L_2891082_SNP [dm3] 3L_2891082_SNP [dm6]	T	C	4.096e^-4	0.866	INTRON spz5
3L	8531153	3L_8531153_SNP [dm3] 3L_8538053_SNP [dm6]	C	T	4.099e^-4	0.866	DOWNSTREAM ergic53 INTERGENIC
3L	6633195	3L_6633195_SNP [dm3] 3L_6640095_SNP [dm6]	T	C	4.103e^-4	0.866	UPSTREAM CR45238 INTERGENIC
3R	10331689	3R_10331689_SNP [dm3] 3R_14505967_SNP [dm6]	C	A	4.122e^-4	0.866	INTRON CR44177
2R	19518921	2R_19518921_SNP [dm3] 2R_23631398_SNP [dm6]	T	C	4.151e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE
3R	16855572	3R_16855572_SNP [dm3] 3R_21029850_SNP [dm6]	C	T	4.155e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23575076	3R_23575076_SNP [dm3] 3R_27749354_SNP [dm6]	C	G	4.183e^-4	0.866	DOWNSTREAM Ets98B INTERGENIC
3R	24533456	3R_24533456_SNP [dm3] 3R_28707734_SNP [dm6]	C	T	4.183e^-4	0.866	INTRON htt	TF binding site mE1_TFBS_chinmo
3R	11556488	3R_11556488_DEL [dm3] 3R_15730766_DEL [dm6]	CTGTAC	C	4.193e^-4	0.866	UPSTREAM CG34274 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1607499	2L_1607499_INS [dm3] 2L_1607499_INS [dm6]	A	AGGTGCAGCA	4.215e^-4	0.866	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo
2L	4235636	2L_4235636_SNP [dm3] 2L_4235636_SNP [dm6]	A	G	4.215e^-4	0.866	INTERGENIC
2L	6618917	2L_6618917_SNP [dm3] 2L_6618917_SNP [dm6]	A	T	4.221e^-4	0.866	UPSTREAM CR44913 INTRON CG11320
2L	15163107	2L_15163107_SNP [dm3] 2L_15163107_SNP [dm6]	C	T	4.222e^-4	0.866	UTR_3_PRIME CG4168
3R	22756568	3R_22756568_SNP [dm3] 3R_26930846_SNP [dm6]	A	C	4.255e^-4	0.866	INTRON sda
3R	27019163	3R_27019163_SNP [dm3] 3R_31193441_SNP [dm6]	A	G	4.263e^-4	0.866	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3196973	2R_3196973_SNP [dm3] 2R_7309468_SNP [dm6]	G	A	4.278e^-4	0.866	INTERGENIC
3L	9827258	3L_9827258_SNP [dm3] 3L_9834158_SNP [dm6]	A	G	4.294e^-4	0.866	UTR_3_PRIME CG43897 DOWNSTREAM I-2
2R	3197305	2R_3197305_SNP [dm3] 2R_7309800_SNP [dm6]	A	G	4.297e^-4	0.866	INTERGENIC
2R	5505915	2R_5505915_SNP [dm3] 2R_9618410_SNP [dm6]	T	A	4.299e^-4	0.866	INTRON Mmp2
3R	25373698	3R_25373698_SNP [dm3] 3R_29547976_SNP [dm6]	C	T	4.315e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	7158232	2L_7158232_SNP [dm3] 2L_7158232_SNP [dm6]	T	C	4.331e^-4	0.866	UPSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19097011	2L_19097011_SNP [dm3] 2L_19097011_SNP [dm6]	A	T	4.333e^-4	0.866	INTRON Lim3
2L	11491010	2L_11491010_SNP [dm3] 2L_11491010_SNP [dm6]	G	A	4.341e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11491110	2L_11491110_SNP [dm3] 2L_11491110_SNP [dm6]	T	C	4.341e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9952223	3L_9952223_SNP [dm3] 3L_9959123_SNP [dm6]	A	T	4.349e^-4	0.866	INTRON CG34356
2L	19102138	2L_19102138_SNP [dm3] 2L_19102138_SNP [dm6]	T	A	4.374e^-4	0.866	INTRON Lim3 & 2 others
3R	24176251	3R_24176251_SNP [dm3] 3R_28350529_SNP [dm6]	A	G	4.393e^-4	0.866	INTERGENIC
3R	16018197	3R_16018197_SNP [dm3] 3R_20192475_SNP [dm6]	C	A	4.394e^-4	0.866	INTERGENIC
3R	16018214	3R_16018214_DEL [dm3] 3R_20192492_DEL [dm6]	CTT	C	4.394e^-4	0.866	INTERGENIC
3R	26176265	3R_26176265_SNP [dm3] 3R_30350543_SNP [dm6]	C	G	4.424e^-4	0.866	INTRON hdc
2L	12372894	2L_12372894_SNP [dm3] 2L_12372894_SNP [dm6]	T	C	4.425e^-4	0.866	INTRON bru-2
3R	10098059	3R_10098059_SNP [dm3] 3R_14272337_SNP [dm6]	G	T	4.455e^-4	0.866	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3124541	3L_3124541_SNP [dm3] 3L_3124541_SNP [dm6]	T	C	4.458e^-4	0.866	INTRON prominin-like
3L	14993536	3L_14993536_INS [dm3] 3L_15000436_INS [dm6]	A	AAAA	4.480e^-4	0.866	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	12282835	2R_12282835_SNP [dm3] 2R_16395330_SNP [dm6]	G	T	4.489e^-4	0.866	INTRON Sema-2b
2R	14269566	2R_14269566_DEL [dm3] 2R_18382061_DEL [dm6]	AGGGGGAATA	A	4.513e^-4	0.866	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	14269579	2R_14269579_SNP [dm3] 2R_18382074_SNP [dm6]	C	T	4.513e^-4	0.866	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	14269599	2R_14269599_SNP [dm3] 2R_18382094_SNP [dm6]	T	C	4.513e^-4	0.866	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	14269623	2R_14269623_SNP [dm3] 2R_18382118_SNP [dm6]	A	T	4.513e^-4	0.866	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	14269624	2R_14269624_SNP [dm3] 2R_18382119_SNP [dm6]	G	A	4.513e^-4	0.866	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	79747	3L_79747_SNP [dm3] 3L_79747_SNP [dm6]	T	A	4.524e^-4	0.866	INTERGENIC
2R	3169429	2R_3169429_SNP [dm3] 2R_7281924_SNP [dm6]	A	G	4.526e^-4	0.866	UPSTREAM pwn DOWNSTREAM Incenp INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26580256	3R_26580256_DEL [dm3] 3R_30754534_DEL [dm6]	ACTTGGCTTACTTCGGTTCG...	A	4.532e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6280552	X_6280552_SNP [dm3] X_6386519_SNP [dm6]	A	C	4.533e^-4	0.866	INTERGENIC
2R	9346249	2R_9346249_SNP [dm3] 2R_13458744_SNP [dm6]	A	G	4.549e^-4	0.866	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10249200	3R_10249200_SNP [dm3] 3R_14423478_SNP [dm6]	A	G	4.570e^-4	0.866	UPSTREAM CR44176 INTRON cv-c
3L	18672835	3L_18672835_SNP [dm3] 3L_18679735_SNP [dm6]	G	A	4.594e^-4	0.866	UPSTREAM CG34254 INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	17847785	X_17847785_SNP [dm3] X_17953752_SNP [dm6]	T	A	4.596e^-4	0.866	INTRON Sh
X	19361762	X_19361762_SNP [dm3] X_19467729_SNP [dm6]	A	G	4.600e^-4	0.866	INTRON kek5
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	4.604e^-4	0.866	INTERGENIC
2R	17825586	2R_17825586_SNP [dm3] 2R_21938081_SNP [dm6]	G	A	4.610e^-4	0.866	INTRON Fili
3R	9757828	3R_9757828_SNP [dm3] 3R_13932106_SNP [dm6]	A	G	4.626e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3264891	3L_3264891_SNP [dm3] 3L_3264891_SNP [dm6]	C	T	4.628e^-4	0.866	INTRON ckd
2R	15030882	2R_15030882_SNP [dm3] 2R_19143377_SNP [dm6]	G	A	4.633e^-4	0.866	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16863211	3R_16863211_SNP [dm3] 3R_21037489_SNP [dm6]	T	A	4.635e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	16863212	3R_16863212_SNP [dm3] 3R_21037490_SNP [dm6]	T	C	4.635e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	16863228	3R_16863228_SNP [dm3] 3R_21037506_SNP [dm6]	C	T	4.635e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
X	9227822	X_9227822_SNP [dm3] X_9333789_SNP [dm6]	G	A	4.641e^-4	0.866	INTRON CG34449
2R	16436959	2R_16436959_SNP [dm3] 2R_20549454_SNP [dm6]	T	C	4.644e^-4	0.866	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	4.645e^-4	0.866	UTR_5_PRIME CG43174
2L	4235586	2L_4235586_SNP [dm3] 2L_4235586_SNP [dm6]	G	A	4.651e^-4	0.866	INTERGENIC
X	2438622	X_2438622_SNP [dm3] X_2544589_SNP [dm6]	A	T	4.657e^-4	0.866	NON_SYNONYMOUS_CODING trol DOWNSTREAM mir-4955
2R	5275318	2R_5275318_SNP [dm3] 2R_9387813_SNP [dm6]	A	G	4.665e^-4	0.866	UTR_5_PRIME CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5275343	2R_5275343_SNP [dm3] 2R_9387838_SNP [dm6]	A	G	4.665e^-4	0.866	UTR_5_PRIME CG13954	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26571821	3R_26571821_SNP [dm3] 3R_30746099_SNP [dm6]	T	G	4.681e^-4	0.866	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3R	26577766	3R_26577766_SNP [dm3] 3R_30752044_SNP [dm6]	C	T	4.681e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10728920	2L_10728920_SNP [dm3] 2L_10728920_SNP [dm6]	A	C	4.692e^-4	0.866	UPSTREAM CG6443 DOWNSTREAM CG6431 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26198235	3R_26198235_SNP [dm3] 3R_30372513_SNP [dm6]	T	G	4.696e^-4	0.866	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14272011	2R_14272011_SNP [dm3] 2R_18384506_SNP [dm6]	C	G	4.744e^-4	0.866	UPSTREAM CG18107 DOWNSTREAM CG15067 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15599088	3L_15599088_SNP [dm3] 3L_15605988_SNP [dm6]	C	G	4.745e^-4	0.866	INTRON RhoGAP71E
2L	10575365	2L_10575365_SNP [dm3] 2L_10575365_SNP [dm6]	A	G	4.746e^-4	0.866	DOWNSTREAM w-cup INTRON Trim9
2L	11490925	2L_11490925_SNP [dm3] 2L_11490925_SNP [dm6]	C	T	4.758e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23984167	3R_23984167_SNP [dm3] 3R_28158445_SNP [dm6]	C	T	4.759e^-4	0.866	INTRON CG34354
3R	17393620	3R_17393620_SNP [dm3] 3R_21567898_SNP [dm6]	A	G	4.770e^-4	0.866	INTRON CG15498
3R	26578363	3R_26578363_SNP [dm3] 3R_30752641_SNP [dm6]	A	G	4.774e^-4	0.866	INTERGENIC
3R	13062492	3R_13062492_SNP [dm3] 3R_17236770_SNP [dm6]	T	C	4.791e^-4	0.866	INTRON beat-IIb
2L	19953154	2L_19953154_SNP [dm3] 2L_19953154_SNP [dm6]	C	T	4.794e^-4	0.866	INTRON sick	TF binding site mE1_TFBS_bab1
2R	8631386	2R_8631386_SNP [dm3] 2R_12743881_SNP [dm6]	T	G	4.802e^-4	0.866	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5360329	X_5360329_SNP [dm3] X_5466296_SNP [dm6]	T	A	4.817e^-4	0.866	INTRON SPR
3R	19632474	3R_19632474_SNP [dm3] 3R_23806752_SNP [dm6]	A	G	4.852e^-4	0.866	SYNONYMOUS_CODING CG33111 INTRON CG34355
3R	19632563	3R_19632563_SNP [dm3] 3R_23806841_SNP [dm6]	C	G	4.852e^-4	0.866	INTRON CG34355 & 1 other
2R	3197034	2R_3197034_SNP [dm3] 2R_7309529_SNP [dm6]	A	T	4.880e^-4	0.866	INTERGENIC
3L	18958657	3L_18958657_SNP [dm3] 3L_18965557_SNP [dm6]	G	T	4.895e^-4	0.866	INTERGENIC
3L	8997732	3L_8997732_SNP [dm3] 3L_9004632_SNP [dm6]	T	C	4.908e^-4	0.866	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10991686	2L_10991686_SNP [dm3] 2L_10991686_SNP [dm6]	G	A	4.928e^-4	0.866	SYNONYMOUS_CODING CG16833
2L	4102683	2L_4102683_SNP [dm3] 2L_4102683_SNP [dm6]	A	G	4.929e^-4	0.866	INTRON ed
3L	13233378	3L_13233378_SNP [dm3] 3L_13240278_SNP [dm6]	T	C	4.945e^-4	0.866	INTRON caps
3L	2980859	3L_2980859_SNP [dm3] 3L_2980859_SNP [dm6]	C	T	4.945e^-4	0.866	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	2331762	X_2331762_SNP [dm3] X_2437729_SNP [dm6]	C	G	4.947e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1947150	2L_1947150_DEL [dm3] 2L_1947150_DEL [dm6]	CG	C	4.953e^-4	0.866	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2662578	3L_2662578_SNP [dm3] 3L_2662578_SNP [dm6]	G	A	4.972e^-4	0.866	SYNONYMOUS_CODING CG33234 INTRON Fife
X	7258785	X_7258785_SNP [dm3] X_7364752_SNP [dm6]	T	A	4.972e^-4	0.866	INTRON CG1677 & 1 other
X	7258786	X_7258786_SNP [dm3] X_7364753_SNP [dm6]	C	T	4.972e^-4	0.866	INTRON CG1677 & 1 other
3R	26572788	3R_26572788_SNP [dm3] 3R_30747066_SNP [dm6]	C	T	4.977e^-4	0.866	UPSTREAM Npc2h EXON CR43238
2L	2664339	2L_2664339_SNP [dm3] 2L_2664339_SNP [dm6]	A	G	5.007e^-4	0.866	UPSTREAM CG9879 INTERGENIC
3R	16863205	3R_16863205_SNP [dm3] 3R_21037483_SNP [dm6]	C	T	5.020e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	14596275	3R_14596275_SNP [dm3] 3R_18770553_SNP [dm6]	A	G	5.025e^-4	0.866	INTRON CG7720
X	16726433	X_16726433_INS [dm3] X_16832400_INS [dm6]	C	CAC	5.045e^-4	0.866	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
X	11661375	X_11661375_SNP [dm3] X_11767342_SNP [dm6]	C	G	5.052e^-4	0.866	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	5.066e^-4	0.866	INTRON Mef2
3L	8811943	3L_8811943_SNP [dm3] 3L_8818843_SNP [dm6]	G	A	5.072e^-4	0.866	INTERGENIC
X	5195509	X_5195509_SNP [dm3] X_5301476_SNP [dm6]	G	T	5.075e^-4	0.866	SYNONYMOUS_CODING CG42749	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3795215	3L_3795215_SNP [dm3] 3L_3795215_SNP [dm6]	A	G	5.083e^-4	0.866	UPSTREAM CG32264 INTRON CG32264
3L	2378372	3L_2378372_SNP [dm3] 3L_2378372_SNP [dm6]	C	A	5.114e^-4	0.866	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17718313	3L_17718313_SNP [dm3] 3L_17725213_SNP [dm6]	G	T	5.122e^-4	0.866	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA
X	13866409	X_13866409_SNP [dm3] X_13972376_SNP [dm6]	T	G	5.128e^-4	0.866	INTRON mamo
3L	3806503	3L_3806503_SNP [dm3] 3L_3806503_SNP [dm6]	G	T	5.146e^-4	0.866	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26586073	3R_26586073_SNP [dm3] 3R_30760351_SNP [dm6]	G	T	5.163e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26586076	3R_26586076_SNP [dm3] 3R_30760354_SNP [dm6]	T	C	5.163e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10096291	2R_10096291_SNP [dm3] 2R_14208786_SNP [dm6]	T	C	5.175e^-4	0.866	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22512429	3L_22512429_SNP [dm3] 3L_22519329_SNP [dm6]	T	A	5.186e^-4	0.866	INTERGENIC
3L	22512430	3L_22512430_SNP [dm3] 3L_22519330_SNP [dm6]	C	A	5.186e^-4	0.866	INTERGENIC
3L	6365631	3L_6365631_SNP [dm3] 3L_6372531_SNP [dm6]	C	A	5.206e^-4	0.866	INTERGENIC
2R	18325632	2R_18325632_SNP [dm3] 2R_22438127_SNP [dm6]	T	A	5.219e^-4	0.866	INTERGENIC
3R	14446030	3R_14446030_SNP [dm3] 3R_18620308_SNP [dm6]	G	A	5.222e^-4	0.866	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
2L	4235605	2L_4235605_SNP [dm3] 2L_4235605_SNP [dm6]	A	G	5.225e^-4	0.866	INTERGENIC
3L	7588851	3L_7588851_SNP [dm3] 3L_7595751_SNP [dm6]	T	A	5.233e^-4	0.866	INTRON CG33275
3L	7588896	3L_7588896_SNP [dm3] 3L_7595796_SNP [dm6]	G	A	5.233e^-4	0.866	INTRON CG33275
3L	7588897	3L_7588897_SNP [dm3] 3L_7595797_SNP [dm6]	G	A	5.233e^-4	0.866	INTRON CG33275
3R	10166428	3R_10166428_SNP [dm3] 3R_14340706_SNP [dm6]	G	A	5.248e^-4	0.866	INTRON NK7.1
2R	5522003	2R_5522003_SNP [dm3] 2R_9634498_SNP [dm6]	G	A	5.261e^-4	0.866	INTRON Mmp2
2L	10192147	2L_10192147_SNP [dm3] 2L_10192147_SNP [dm6]	A	G	5.263e^-4	0.866	UPSTREAM CG31874 INTRON Sur
2R	18220968	2R_18220968_SNP [dm3] 2R_22333463_SNP [dm6]	G	T	5.333e^-4	0.866	UTR_3_PRIME CG34208 DOWNSTREAM Liprin-gamma & 1 other
2R	6201207	2R_6201207_SNP [dm3] 2R_10313702_SNP [dm6]	T	C	5.339e^-4	0.866	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	5.342e^-4	0.866	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3956456	3L_3956456_SNP [dm3] 3L_3956456_SNP [dm6]	A	G	5.344e^-4	0.866	UTR_3_PRIME CG12605 DOWNSTREAM CG12605
3L	19106517	3L_19106517_DEL [dm3] 3L_19113417_DEL [dm6]	AACAAATGAGTCTCTCT...	A	5.351e^-4	0.866	INTRON CG14082	TF binding site mE1_TFBS_inv
2R	17647237	2R_17647237_SNP [dm3] 2R_21759732_SNP [dm6]	T	C	5.354e^-4	0.866	INTERGENIC
X	6455420	X_6455420_SNP [dm3] X_6561387_SNP [dm6]	C	T	5.373e^-4	0.866	SYNONYMOUS_CODING CG34417
3L	3823252	3L_3823252_SNP [dm3] 3L_3823252_SNP [dm6]	T	A	5.396e^-4	0.866	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15721747	3L_15721747_INS [dm3] 3L_15728647_INS [dm6]	T	TT	5.402e^-4	0.866	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18574818	3L_18574818_SNP [dm3] 3L_18581718_SNP [dm6]	C	T	5.411e^-4	0.866	INTERGENIC
2L	8324508	2L_8324508_SNP [dm3] 2L_8324508_SNP [dm6]	A	G	5.415e^-4	0.866	INTRON CG7781
2L	8324595	2L_8324595_SNP [dm3] 2L_8324595_SNP [dm6]	T	A	5.415e^-4	0.866	INTRON CG7781
3R	26571827	3R_26571827_SNP [dm3] 3R_30746105_SNP [dm6]	A	G	5.440e^-4	0.866	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3R	25284486	3R_25284486_SNP [dm3] 3R_29458764_SNP [dm6]	T	A	5.448e^-4	0.866	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25284492	3R_25284492_SNP [dm3] 3R_29458770_SNP [dm6]	G	A	5.448e^-4	0.866	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	1982602	X_1982602_SNP [dm3] X_2088569_SNP [dm6]	A	T	5.450e^-4	0.866	UPSTREAM Unc-76 INTRON Unc-76
2R	19624995	2R_19624995_SNP [dm3] 2R_23737472_SNP [dm6]	G	A	5.456e^-4	0.866	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5104352	3R_5104352_SNP [dm3] 3R_9278630_SNP [dm6]	C	A	5.459e^-4	0.866	INTERGENIC
2R	3896623	2R_3896623_SNP [dm3] 2R_8009118_SNP [dm6]	T	C	5.460e^-4	0.866	DOWNSTREAM CG14762 & 1 other INTERGENIC
X	6455930	X_6455930_SNP [dm3] X_6561897_SNP [dm6]	C	T	5.461e^-4	0.866	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17740236	3L_17740236_SNP [dm3] 3L_17747136_SNP [dm6]	A	T	5.465e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
3L	2581730	3L_2581730_SNP [dm3] 3L_2581730_SNP [dm6]	C	A	5.515e^-4	0.866	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2538135	3L_2538135_SNP [dm3] 3L_2538135_SNP [dm6]	T	C	5.519e^-4	0.866	INTRON Spn
3R	26930370	3R_26930370_SNP [dm3] 3R_31104648_SNP [dm6]	C	T	5.544e^-4	0.866	INTERGENIC
3L	17939329	3L_17939329_SNP [dm3] 3L_17946229_SNP [dm6]	T	C	5.555e^-4	0.866	DOWNSTREAM CG43174 & 1 other INTERGENIC
X	4302776	X_4302776_SNP [dm3] X_4408743_SNP [dm6]	T	C	5.566e^-4	0.866	INTRON CR32773
X	9228260	X_9228260_SNP [dm3] X_9334227_SNP [dm6]	G	A	5.570e^-4	0.866	INTRON CG34449
2R	14271742	2R_14271742_SNP [dm3] 2R_18384237_SNP [dm6]	C	A	5.572e^-4	0.866	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
2R	14271942	2R_14271942_SNP [dm3] 2R_18384437_SNP [dm6]	A	G	5.572e^-4	0.866	UPSTREAM CG18107 DOWNSTREAM CG15067 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25127172	3R_25127172_SNP [dm3] 3R_29301450_SNP [dm6]	C	T	5.572e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13380861	3R_13380861_SNP [dm3] 3R_17555139_SNP [dm6]	A	T	5.573e^-4	0.866	INTERGENIC
2L	4442692	2L_4442692_SNP [dm3] 2L_4442692_SNP [dm6]	C	A	5.580e^-4	0.866	SYNONYMOUS_CODING CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19684952	2R_19684952_SNP [dm3] 2R_23797429_SNP [dm6]	A	G	5.616e^-4	0.866	UTR_5_PRIME CG9850
X	14927772	X_14927772_SNP [dm3] X_15033739_SNP [dm6]	C	A	5.616e^-4	0.866	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
X	5926169	X_5926169_SNP [dm3] X_6032136_SNP [dm6]	T	G	5.644e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_sens
3R	18532285	3R_18532285_SNP [dm3] 3R_22706563_SNP [dm6]	T	G	5.644e^-4	0.866	SYNONYMOUS_CODING CG13842
X	8047334	X_8047334_SNP [dm3] X_8153301_SNP [dm6]	T	C	5.645e^-4	0.866	SYNONYMOUS_CODING CG18262	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6260685	3L_6260685_DEL [dm3] 3L_6267585_DEL [dm6]	CTTAGTTCAC	C	5.648e^-4	0.866	INTERGENIC
3R	15373951	3R_15373951_DEL [dm3] 3R_19548229_DEL [dm6]	TCCATTTCT	T	5.651e^-4	0.866	INTRON Dys
3L	18359463	3L_18359463_SNP [dm3] 3L_18366363_SNP [dm6]	T	C	5.656e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11980171	2R_11980171_SNP [dm3] 2R_16092666_SNP [dm6]	C	T	5.686e^-4	0.866	INTRON Dg
X	18048474	X_18048474_DEL [dm3] X_18154441_DEL [dm6]	TTG	T	5.690e^-4	0.866	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9723003	3R_9723003_SNP [dm3] 3R_13897281_SNP [dm6]	C	T	5.703e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19274494	2R_19274494_SNP [dm3] 2R_23386971_SNP [dm6]	T	A	5.732e^-4	0.866	UTR_5_PRIME eIF2B-delta UPSTREAM CG30415 INTRON eIF2B-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18215065	3L_18215065_MNP [dm3] 3L_18221965_MNP [dm6]	TAG	ATT	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215070	3L_18215070_SNP [dm3] 3L_18221970_SNP [dm6]	A	T	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215071	3L_18215071_DEL [dm3] 3L_18221971_DEL [dm6]	AGAC	A	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215079	3L_18215079_SNP [dm3] 3L_18221979_SNP [dm6]	C	T	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215080	3L_18215080_SNP [dm3] 3L_18221980_SNP [dm6]	A	T	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215082	3L_18215082_SNP [dm3] 3L_18221982_SNP [dm6]	A	T	5.750e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5505861	2R_5505861_SNP [dm3] 2R_9618356_SNP [dm6]	A	G	5.758e^-4	0.866	INTRON Mmp2
2R	5505862	2R_5505862_SNP [dm3] 2R_9618357_SNP [dm6]	A	G	5.758e^-4	0.866	INTRON Mmp2
2R	5505869	2R_5505869_SNP [dm3] 2R_9618364_SNP [dm6]	C	T	5.758e^-4	0.866	INTRON Mmp2
2R	5505897	2R_5505897_SNP [dm3] 2R_9618392_SNP [dm6]	A	T	5.758e^-4	0.866	INTRON Mmp2
2R	7136224	2R_7136224_SNP [dm3] 2R_11248719_SNP [dm6]	G	A	5.774e^-4	0.866	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
2L	3510196	2L_3510196_SNP [dm3] 2L_3510196_SNP [dm6]	C	T	5.794e^-4	0.866	UPSTREAM CG31954 DOWNSTREAM CG33123 & 1 other INTERGENIC
3L	3871182	3L_3871182_SNP [dm3] 3L_3871182_SNP [dm6]	G	A	5.794e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24019868	3R_24019868_SNP [dm3] 3R_28194146_SNP [dm6]	G	A	5.794e^-4	0.866	INTRON CG34354
3L	14764622	3L_14764622_SNP [dm3] 3L_14771522_SNP [dm6]	G	T	5.794e^-4	0.866	NON_SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad
X	13389821	X_13389821_SNP [dm3] X_13495788_SNP [dm6]	C	T	5.799e^-4	0.866	INTRON Neto
X	5564247	X_5564247_DEL [dm3] X_5670214_DEL [dm6]	GA	G	5.836e^-4	0.866	UTR_3_PRIME CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl
2L	15520803	2L_15520803_SNP [dm3] 2L_15520803_SNP [dm6]	C	A	5.849e^-4	0.866	INTERGENIC
3L	10553403	3L_10553403_SNP [dm3] 3L_10560303_SNP [dm6]	T	A	5.856e^-4	0.866	INTRON A2bp1
2L	5629348	2L_5629348_SNP [dm3] 2L_5629348_SNP [dm6]	T	A	5.869e^-4	0.866	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5630125	2L_5630125_SNP [dm3] 2L_5630125_SNP [dm6]	A	G	5.869e^-4	0.866	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5630314	2L_5630314_SNP [dm3] 2L_5630314_SNP [dm6]	T	A	5.869e^-4	0.866	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	24727822	3R_24727822_SNP [dm3] 3R_28902100_SNP [dm6]	A	T	5.880e^-4	0.866	UPSTREAM Doa INTRON Doa
2L	7390626	2L_7390626_SNP [dm3] 2L_7390626_SNP [dm6]	G	A	5.880e^-4	0.866	SPLICE_SITE_REGION gudu SYNONYMOUS_CODING gudu DOWNSTREAM CG5160
3L	18955976	3L_18955976_SNP [dm3] 3L_18962876_SNP [dm6]	T	C	5.886e^-4	0.866	INTERGENIC
2L	8841485	2L_8841485_SNP [dm3] 2L_8841485_SNP [dm6]	A	G	5.919e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	10189582	3L_10189582_SNP [dm3] 3L_10196482_SNP [dm6]	G	T	5.925e^-4	0.866	INTRON ect	TF binding site mE1_TFBS_chinmo
3R	23781609	3R_23781609_SNP [dm3] 3R_27955887_SNP [dm6]	G	A	5.927e^-4	0.866	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19629959	2R_19629959_SNP [dm3] 2R_23742436_SNP [dm6]	C	A	5.928e^-4	0.866	INTRON egl
3R	16194027	3R_16194027_SNP [dm3] 3R_20368305_SNP [dm6]	A	G	5.940e^-4	0.866	INTERGENIC
2R	18761443	2R_18761443_SNP [dm3] 2R_22873920_SNP [dm6]	C	A	5.947e^-4	0.866	UTR_3_PRIME CG13532 UPSTREAM PIP5K59B DOWNSTREAM CR45469
2R	15030643	2R_15030643_SNP [dm3] 2R_19143138_SNP [dm6]	G	A	5.950e^-4	0.866	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	1412768	3L_1412768_SNP [dm3] 3L_1412768_SNP [dm6]	G	A	5.973e^-4	0.866	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2L	9589422	2L_9589422_SNP [dm3] 2L_9589422_SNP [dm6]	G	C	5.987e^-4	0.866	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
3R	13514235	3R_13514235_SNP [dm3] 3R_17688513_SNP [dm6]	A	T	6.020e^-4	0.866	UTR_3_PRIME osa
2R	8471371	2R_8471371_SNP [dm3] 2R_12583866_SNP [dm6]	C	A	6.032e^-4	0.866	INTRON Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14785558	3R_14785558_SNP [dm3] 3R_18959836_SNP [dm6]	T	C	6.035e^-4	0.866	UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
X	3939844	X_3939844_SNP [dm3] X_4045811_SNP [dm6]	T	G	6.044e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6509236	2L_6509236_SNP [dm3] 2L_6509236_SNP [dm6]	A	G	6.063e^-4	0.866	UPSTREAM CR44775 INTRON CG31637
2L	6509255	2L_6509255_SNP [dm3] 2L_6509255_SNP [dm6]	C	T	6.063e^-4	0.866	UPSTREAM CR44775 INTRON CG31637
3R	18903945	3R_18903945_SNP [dm3] 3R_23078223_SNP [dm6]	G	T	6.077e^-4	0.866	INTRON CG13830
2L	5110411	2L_5110411_SNP [dm3] 2L_5110411_SNP [dm6]	G	A	6.106e^-4	0.866	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10886014	3L_10886014_SNP [dm3] 3L_10892914_SNP [dm6]	T	G	6.108e^-4	0.866	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	5151102	3R_5151102_SNP [dm3] 3R_9325380_SNP [dm6]	G	A	6.112e^-4	0.866	INTRON CG8861
2R	3228744	2R_3228744_DEL [dm3] 2R_7341239_DEL [dm6]	GG	G	6.116e^-4	0.866	SPLICE_SITE_REGION Dscam1 INTRON Dscam1
2R	18777912	2R_18777912_SNP [dm3] 2R_22890389_SNP [dm6]	C	T	6.118e^-4	0.866	INTRON MED23	TF binding site mE1_TFBS_cad
3L	12549692	3L_12549692_SNP [dm3] 3L_12556592_SNP [dm6]	T	G	6.126e^-4	0.866	INTRON sowah
3L	12549693	3L_12549693_DEL [dm3] 3L_12556593_DEL [dm6]	AGGCGGTT	A	6.126e^-4	0.866	INTRON sowah
3L	12549707	3L_12549707_SNP [dm3] 3L_12556607_SNP [dm6]	T	G	6.126e^-4	0.866	INTRON sowah
3L	12549712	3L_12549712_INS [dm3] 3L_12556612_INS [dm6]	A	AA	6.126e^-4	0.866	INTRON sowah
3L	12549727	3L_12549727_SNP [dm3] 3L_12556627_SNP [dm6]	T	C	6.126e^-4	0.866	INTRON sowah
3L	12549734	3L_12549734_SNP [dm3] 3L_12556634_SNP [dm6]	T	A	6.126e^-4	0.866	INTRON sowah
2L	14926082	2L_14926082_SNP [dm3] 2L_14926082_SNP [dm6]	A	G	6.134e^-4	0.866	NON_SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	4105074	2L_4105074_SNP [dm3] 2L_4105074_SNP [dm6]	G	A	6.138e^-4	0.866	INTRON ed
2L	4105083	2L_4105083_SNP [dm3] 2L_4105083_SNP [dm6]	A	C	6.138e^-4	0.866	INTRON ed
2L	4105100	2L_4105100_SNP [dm3] 2L_4105100_SNP [dm6]	A	G	6.138e^-4	0.866	INTRON ed
2L	4105145	2L_4105145_SNP [dm3] 2L_4105145_SNP [dm6]	A	G	6.138e^-4	0.866	INTRON ed
2L	4105209	2L_4105209_SNP [dm3] 2L_4105209_SNP [dm6]	T	A	6.138e^-4	0.866	INTRON ed
2L	4105338	2L_4105338_SNP [dm3] 2L_4105338_SNP [dm6]	G	C	6.138e^-4	0.866	INTRON ed
3R	13487113	3R_13487113_SNP [dm3] 3R_17661391_SNP [dm6]	G	A	6.141e^-4	0.866	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1817627	3R_1817627_SNP [dm3] 3R_5991905_SNP [dm6]	G	A	6.147e^-4	0.866	INTERGENIC
2R	12898611	2R_12898611_SNP [dm3] 2R_17011106_SNP [dm6]	C	G	6.157e^-4	0.866	INTRON Ehbp1
2L	4245731	2L_4245731_SNP [dm3] 2L_4245731_SNP [dm6]	T	C	6.158e^-4	0.866	DOWNSTREAM CR44059 INTERGENIC
3R	14806983	3R_14806983_DEL [dm3] 3R_18981261_DEL [dm6]	AA	A	6.165e^-4	0.866	UTR_5_PRIME Smu1 UPSTREAM dnk & 1 other INTRON dnk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11868131	3L_11868131_SNP [dm3] 3L_11875031_SNP [dm6]	A	T	6.171e^-4	0.866	INTRON CG44837
3L	11868133	3L_11868133_SNP [dm3] 3L_11875033_SNP [dm6]	T	G	6.171e^-4	0.866	INTRON CG44837
2R	18966912	2R_18966912_SNP [dm3] 2R_23079389_SNP [dm6]	T	C	6.181e^-4	0.866	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	18966914	2R_18966914_DEL [dm3] 2R_23079391_DEL [dm6]	TGATA	T	6.181e^-4	0.866	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
2R	18966921	2R_18966921_INS [dm3] 2R_23079398_INS [dm6]	T	TATACATCTTATTC...	6.181e^-4	0.866	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
3L	12606076	3L_12606076_SNP [dm3] 3L_12612976_SNP [dm6]	G	A	6.181e^-4	0.866	INTRON caup	silencer mE1_HDAC_PRE
X	12821543	X_12821543_SNP [dm3] X_12927510_SNP [dm6]	G	A	6.195e^-4	0.866	INTRON fne
3R	17987583	3R_17987583_SNP [dm3] 3R_22161861_SNP [dm6]	G	A	6.196e^-4	0.866	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	5877376	X_5877376_SNP [dm3] X_5983343_SNP [dm6]	C	T	6.196e^-4	0.866	INTRON Grip
2R	6174228	2R_6174228_SNP [dm3] 2R_10286723_SNP [dm6]	T	A	6.199e^-4	0.866	DOWNSTREAM CAP INTRON CAP
2R	6174232	2R_6174232_SNP [dm3] 2R_10286727_SNP [dm6]	G	A	6.199e^-4	0.866	DOWNSTREAM CAP INTRON CAP
3R	5145910	3R_5145910_SNP [dm3] 3R_9320188_SNP [dm6]	A	G	6.199e^-4	0.866	INTRON CG8861
2R	15712245	2R_15712245_SNP [dm3] 2R_19824740_SNP [dm6]	G	A	6.218e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	18149888	3L_18149888_SNP [dm3] 3L_18156788_SNP [dm6]	A	T	6.220e^-4	0.866	INTRON CG13699
3L	18150186	3L_18150186_SNP [dm3] 3L_18157086_SNP [dm6]	G	T	6.220e^-4	0.866	SPLICE_SITE_REGION CG13699 INTRON CG13699
3R	23578455	3R_23578455_SNP [dm3] 3R_27752733_SNP [dm6]	T	C	6.237e^-4	0.866	INTERGENIC
3R	23579088	3R_23579088_SNP [dm3] 3R_27753366_SNP [dm6]	C	T	6.237e^-4	0.866	INTERGENIC
2R	11440304	2R_11440304_SNP [dm3] 2R_15552799_SNP [dm6]	A	G	6.238e^-4	0.866	INTERGENIC
2L	6740033	2L_6740033_SNP [dm3] 2L_6740033_SNP [dm6]	C	A	6.240e^-4	0.866	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12594036	X_12594036_SNP [dm3] X_12700003_SNP [dm6]	C	T	6.254e^-4	0.866	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12594050	X_12594050_INS [dm3] X_12700017_INS [dm6]	A	AG	6.254e^-4	0.866	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	755530	2L_755530_INS [dm3] 2L_755530_INS [dm6]	T	TTTAATTTATTATTT...	6.255e^-4	0.866	INTRON GABA-B-R3
2L	19953140	2L_19953140_SNP [dm3] 2L_19953140_SNP [dm6]	G	T	6.259e^-4	0.866	INTRON sick	TF binding site mE1_TFBS_bab1
2R	17006653	2R_17006653_SNP [dm3] 2R_21119148_SNP [dm6]	C	G	6.273e^-4	0.866	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3095584	2R_3095584_SNP [dm3] 2R_7208079_SNP [dm6]	A	T	6.282e^-4	0.866	INTRON pk
3R	19501190	3R_19501190_SNP [dm3] 3R_23675468_SNP [dm6]	G	A	6.283e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4235603	2L_4235603_SNP [dm3] 2L_4235603_SNP [dm6]	A	G	6.293e^-4	0.866	INTERGENIC
2L	4235612	2L_4235612_SNP [dm3] 2L_4235612_SNP [dm6]	C	T	6.293e^-4	0.866	INTERGENIC
2R	14976404	2R_14976404_SNP [dm3] 2R_19088899_SNP [dm6]	G	C	6.300e^-4	0.866	INTRON 5-HT1A
3R	16018003	3R_16018003_SNP [dm3] 3R_20192281_SNP [dm6]	C	G	6.312e^-4	0.866	INTERGENIC
3L	8639580	3L_8639580_SNP [dm3] 3L_8646480_SNP [dm6]	G	C	6.326e^-4	0.866	NON_SYNONYMOUS_CODING CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9827108	3L_9827108_SNP [dm3] 3L_9834008_SNP [dm6]	A	T	6.326e^-4	0.866	UTR_3_PRIME CG43897 DOWNSTREAM I-2
2R	11441358	2R_11441358_SNP [dm3] 2R_15553853_SNP [dm6]	G	A	6.333e^-4	0.866	INTERGENIC
X	12605402	X_12605402_DEL [dm3] X_12711369_DEL [dm6]	TT	T	6.347e^-4	0.866	INTRON Smr	TF binding site mE1_TFBS_chinmo
3R	17345267	3R_17345267_SNP [dm3] 3R_21519545_SNP [dm6]	A	G	6.359e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18214947	3L_18214947_SNP [dm3] 3L_18221847_SNP [dm6]	C	T	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214951	3L_18214951_SNP [dm3] 3L_18221851_SNP [dm6]	C	A	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214954	3L_18214954_INS [dm3] 3L_18221854_INS [dm6]	A	AAGTCAGTG	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215017	3L_18215017_SNP [dm3] 3L_18221917_SNP [dm6]	A	T	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215020	3L_18215020_SNP [dm3] 3L_18221920_SNP [dm6]	G	T	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215026	3L_18215026_SNP [dm3] 3L_18221926_SNP [dm6]	A	C	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215028	3L_18215028_MNP [dm3] 3L_18221928_MNP [dm6]	ACA	TTT	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215033	3L_18215033_INS [dm3] 3L_18221933_INS [dm6]	TT	AAGCGCAAA	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215057	3L_18215057_MNP [dm3] 3L_18221957_MNP [dm6]	TAA	GTG	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215086	3L_18215086_DEL [dm3] 3L_18221986_DEL [dm6]	TTTTT	AC	6.405e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6736404	X_6736404_SNP [dm3] X_6842371_SNP [dm6]	A	G	6.426e^-4	0.866	INTRON CG14435
3L	20755509	3L_20755509_SNP [dm3] 3L_20762409_SNP [dm6]	C	T	6.426e^-4	0.866	INTERGENIC
3L	6654729	3L_6654729_SNP [dm3] 3L_6661629_SNP [dm6]	G	A	6.484e^-4	0.866	INTERGENIC
3L	6655255	3L_6655255_SNP [dm3] 3L_6662155_SNP [dm6]	C	T	6.484e^-4	0.866	INTERGENIC
3R	9909548	3R_9909548_SNP [dm3] 3R_14083826_SNP [dm6]	G	A	6.487e^-4	0.866	INTRON foxo
3R	25240144	3R_25240144_SNP [dm3] 3R_29414422_SNP [dm6]	A	G	6.503e^-4	0.866	INTRON Ptp99A
2R	17348950	2R_17348950_SNP [dm3] 2R_21461445_SNP [dm6]	C	T	6.525e^-4	0.866	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9909345	3L_9909345_SNP [dm3] 3L_9916245_SNP [dm6]	C	T	6.546e^-4	0.866	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	12684836	2L_12684836_SNP [dm3] 2L_12684836_SNP [dm6]	C	T	6.548e^-4	0.866	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14993682	3L_14993682_SNP [dm3] 3L_15000582_SNP [dm6]	A	G	6.548e^-4	0.866	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6871224	2R_6871224_SNP [dm3] 2R_10983719_SNP [dm6]	A	T	6.553e^-4	0.866	INTRON luna
2L	11172429	2L_11172429_SNP [dm3] 2L_11172429_SNP [dm6]	T	G	6.574e^-4	0.866	UPSTREAM Vm32E INTRON Ca-beta
3R	26577800	3R_26577800_SNP [dm3] 3R_30752078_SNP [dm6]	G	C	6.582e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	901635	3L_901635_SNP [dm3] 3L_901635_SNP [dm6]	C	T	6.592e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	5969662	X_5969662_SNP [dm3] X_6075629_SNP [dm6]	T	C	6.594e^-4	0.866	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC
2R	16835239	2R_16835239_INS [dm3] 2R_20947734_INS [dm6]	C	CC	6.595e^-4	0.866	INTERGENIC
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	6.597e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25095102	3R_25095102_SNP [dm3] 3R_29269380_SNP [dm6]	C	A	6.597e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9852959	2L_9852959_SNP [dm3] 2L_9852959_SNP [dm6]	C	A	6.626e^-4	0.866	INTRON nAChRalpha6
2R	1298515	2R_1298515_DEL [dm3] 2R_5411010_DEL [dm6]	ACCCGGAAGGTATATTGATT...	A	6.635e^-4	0.866	INTERGENIC	transposable element FlyBase
X	16412761	X_16412761_SNP [dm3] X_16518728_SNP [dm6]	G	A	6.637e^-4	0.866	INTRON para
3R	23679614	3R_23679614_SNP [dm3] 3R_27853892_SNP [dm6]	A	G	6.652e^-4	0.866	INTRON CG34353
2R	11848437	2R_11848437_SNP [dm3] 2R_15960932_SNP [dm6]	G	T	6.662e^-4	0.866	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6725841	2R_6725841_SNP [dm3] 2R_10838336_SNP [dm6]	A	G	6.668e^-4	0.866	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6107908	2L_6107908_DEL [dm3] 2L_6107908_DEL [dm6]	TAGCAGGTC	T	6.671e^-4	0.866	INTRON stai
X	1976698	X_1976698_SNP [dm3] X_2082665_SNP [dm6]	G	T	6.687e^-4	0.866	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14927793	X_14927793_SNP [dm3] X_15033760_SNP [dm6]	C	T	6.706e^-4	0.866	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
3L	16454513	3L_16454513_SNP [dm3] 3L_16461413_SNP [dm6]	G	A	6.727e^-4	0.866	INTRON CG33158
2R	14281287	2R_14281287_SNP [dm3] 2R_18393782_SNP [dm6]	T	C	6.728e^-4	0.866	SYNONYMOUS_CODING Idgf5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13261468	2R_13261468_SNP [dm3] 2R_17373963_SNP [dm6]	C	T	6.740e^-4	0.866	SYNONYMOUS_CODING mbl UTR_3_PRIME mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12538691	3L_12538691_INS [dm3] 3L_12545591_INS [dm6]	T	TT	6.752e^-4	0.866	INTRON sowah
2L	1624731	2L_1624731_SNP [dm3] 2L_1624731_SNP [dm6]	G	C	6.768e^-4	0.866	EXON CR44603
3R	25227650	3R_25227650_SNP [dm3] 3R_29401928_SNP [dm6]	C	T	6.790e^-4	0.866	INTRON Ptp99A
2R	10286749	2R_10286749_SNP [dm3] 2R_14399244_SNP [dm6]	A	G	6.803e^-4	0.866	INTERGENIC
X	18877151	X_18877151_SNP [dm3] X_18983118_SNP [dm6]	C	A	6.822e^-4	0.866	INTRON CG43759
3L	2363981	3L_2363981_SNP [dm3] 3L_2363981_SNP [dm6]	A	G	6.823e^-4	0.866	INTERGENIC
2R	17734179	2R_17734179_SNP [dm3] 2R_21846674_SNP [dm6]	G	T	6.827e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22756576	3R_22756576_INS [dm3] 3R_26930854_INS [dm6]	A	AG	6.834e^-4	0.866	INTRON sda
3R	9896146	3R_9896146_SNP [dm3] 3R_14070424_SNP [dm6]	C	T	6.837e^-4	0.866	INTRON foxo
3R	9896175	3R_9896175_INS [dm3] 3R_14070453_INS [dm6]	T	TCT	6.837e^-4	0.866	INTRON foxo
3R	13515990	3R_13515990_SNP [dm3] 3R_17690268_SNP [dm6]	C	T	6.843e^-4	0.866	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13518027	3R_13518027_SNP [dm3] 3R_17692305_SNP [dm6]	C	T	6.843e^-4	0.866	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13523965	3R_13523965_SNP [dm3] 3R_17698243_SNP [dm6]	C	T	6.843e^-4	0.866	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
X	20854307	X_20854307_SNP [dm3] X_20983280_SNP [dm6]	T	C	6.880e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11006745	3R_11006745_SNP [dm3] 3R_15181023_SNP [dm6]	G	C	6.882e^-4	0.866	UPSTREAM Mf INTRON Gyc88E & 1 other
2R	6201709	2R_6201709_SNP [dm3] 2R_10314204_SNP [dm6]	C	T	6.905e^-4	0.866	UTR_5_PRIME Ndg	TF binding site mE1_TFBS_Trl
2L	12763787	2L_12763787_SNP [dm3] 2L_12763787_SNP [dm6]	A	C	6.905e^-4	0.866	INTERGENIC
3L	8163686	3L_8163686_SNP [dm3] 3L_8170586_SNP [dm6]	A	C	6.919e^-4	0.866	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	8163697	3L_8163697_SNP [dm3] 3L_8170597_SNP [dm6]	T	A	6.919e^-4	0.866	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	8882005	2R_8882005_SNP [dm3] 2R_12994500_SNP [dm6]	T	C	6.920e^-4	0.866	NON_SYNONYMOUS_CODING CG33798
2L	6972185	2L_6972185_SNP [dm3] 2L_6972185_SNP [dm6]	T	C	6.925e^-4	0.866	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	6972200	2L_6972200_SNP [dm3] 2L_6972200_SNP [dm6]	T	A	6.925e^-4	0.866	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	23976863	3R_23976863_SNP [dm3] 3R_28151141_SNP [dm6]	A	G	6.934e^-4	0.866	INTRON CG34354
X	13712517	X_13712517_INS [dm3] X_13818484_INS [dm6]	T	TTTTGTTTTTATGGCAAGAA...	6.938e^-4	0.866	INTRON Clic
3R	15680726	3R_15680726_SNP [dm3] 3R_19855004_SNP [dm6]	T	C	6.965e^-4	0.866	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
3R	15680732	3R_15680732_SNP [dm3] 3R_19855010_SNP [dm6]	G	A	6.965e^-4	0.866	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
2R	15712789	2R_15712789_SNP [dm3] 2R_19825284_SNP [dm6]	T	A	6.989e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15712790	2R_15712790_SNP [dm3] 2R_19825285_SNP [dm6]	A	T	6.989e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15029617	2R_15029617_SNP [dm3] 2R_19142112_SNP [dm6]	T	C	7.012e^-4	0.866	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4426554	2L_4426554_SNP [dm3] 2L_4426554_SNP [dm6]	T	C	7.023e^-4	0.866	INTRON CG15431
2L	4679490	2L_4679490_SNP [dm3] 2L_4679490_SNP [dm6]	A	C	7.032e^-4	0.866	INTERGENIC
2L	5645775	2L_5645775_SNP [dm3] 2L_5645775_SNP [dm6]	G	A	7.059e^-4	0.866	INTRON CG31646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21911534	2L_21911534_SNP [dm3] 2L_21911534_SNP [dm6]	A	G	7.060e^-4	0.866	INTERGENIC
3L	2920401	3L_2920401_SNP [dm3] 3L_2920401_SNP [dm6]	A	G	7.061e^-4	0.866	INTRON Shab
3L	2920710	3L_2920710_SNP [dm3] 3L_2920710_SNP [dm6]	G	A	7.061e^-4	0.866	INTRON Shab
3L	2920798	3L_2920798_SNP [dm3] 3L_2920798_SNP [dm6]	A	G	7.061e^-4	0.866	INTRON Shab
3L	2920885	3L_2920885_SNP [dm3] 3L_2920885_SNP [dm6]	C	T	7.061e^-4	0.866	INTRON Shab
2L	9412661	2L_9412661_DEL [dm3] 2L_9412661_DEL [dm6]	ATTATCA	A	7.074e^-4	0.866	INTRON Shawl
2R	3215831	2R_3215831_SNP [dm3] 2R_7328326_SNP [dm6]	A	G	7.075e^-4	0.866	INTRON CR45129 & 1 other
2R	3215934	2R_3215934_SNP [dm3] 2R_7328429_SNP [dm6]	T	G	7.075e^-4	0.866	INTRON CR45129 & 1 other
2R	3215939	2R_3215939_SNP [dm3] 2R_7328434_SNP [dm6]	A	T	7.075e^-4	0.866	INTRON CR45129 & 1 other
2R	5085362	2R_5085362_SNP [dm3] 2R_9197857_SNP [dm6]	G	A	7.077e^-4	0.866	INTRON unpg
2R	9655976	2R_9655976_SNP [dm3] 2R_13768471_SNP [dm6]	G	A	7.108e^-4	0.866	INTERGENIC
3L	13165282	3L_13165282_SNP [dm3] 3L_13172182_SNP [dm6]	G	C	7.108e^-4	0.866	INTERGENIC
3R	24230727	3R_24230727_SNP [dm3] 3R_28405005_SNP [dm6]	G	T	7.108e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3257490	2R_3257490_SNP [dm3] 2R_7369985_SNP [dm6]	C	A	7.109e^-4	0.866	INTRON Dscam1
X	4302488	X_4302488_SNP [dm3] X_4408455_SNP [dm6]	G	A	7.115e^-4	0.866	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	8786074	2L_8786074_SNP [dm3] 2L_8786074_SNP [dm6]	A	G	7.118e^-4	0.866	INTERGENIC
2L	11491050	2L_11491050_SNP [dm3] 2L_11491050_SNP [dm6]	T	A	7.121e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11491065	2L_11491065_SNP [dm3] 2L_11491065_SNP [dm6]	A	T	7.121e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11491071	2L_11491071_SNP [dm3] 2L_11491071_SNP [dm6]	G	C	7.121e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25178197	3R_25178197_SNP [dm3] 3R_29352475_SNP [dm6]	T	C	7.126e^-4	0.866	INTERGENIC
X	5749777	X_5749777_DEL [dm3] X_5855744_DEL [dm6]	CCCCCCTTC	C	7.140e^-4	0.866	INTERGENIC
3R	15740058	3R_15740058_DEL [dm3] 3R_19914336_DEL [dm6]	AT	A	7.149e^-4	0.866	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
3L	12549753	3L_12549753_SNP [dm3] 3L_12556653_SNP [dm6]	T	A	7.158e^-4	0.866	INTRON sowah
3L	1675730	3L_1675730_SNP [dm3] 3L_1675730_SNP [dm6]	A	G	7.167e^-4	0.866	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1675731	3L_1675731_INS [dm3] 3L_1675731_INS [dm6]	A	AT	7.167e^-4	0.866	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5785156	2R_5785156_SNP [dm3] 2R_9897651_SNP [dm6]	T	A	7.182e^-4	0.866	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	11395931	3R_11395931_SNP [dm3] 3R_15570209_SNP [dm6]	A	C	7.187e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4824348	2L_4824348_SNP [dm3] 2L_4824348_SNP [dm6]	C	T	7.190e^-4	0.866	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3451898	2L_3451898_SNP [dm3] 2L_3451898_SNP [dm6]	A	G	7.192e^-4	0.866	UTR_3_PRIME Snx1 UPSTREAM CG12795
X	4302490	X_4302490_DEL [dm3] X_4408457_DEL [dm6]	ATGATAGATTC...	A	7.215e^-4	0.866	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4302517	X_4302517_SNP [dm3] X_4408484_SNP [dm6]	C	T	7.215e^-4	0.866	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7258634	X_7258634_SNP [dm3] X_7364601_SNP [dm6]	G	T	7.220e^-4	0.866	INTRON CG1677 & 1 other
3L	22981275	3L_22981275_SNP [dm3] 3L_22988175_SNP [dm6]	G	T	7.221e^-4	0.866	UTR_3_PRIME CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14635383	2L_14635383_SNP [dm3] 2L_14635383_SNP [dm6]	C	T	7.229e^-4	0.866	INTRON osp
3R	18593697	3R_18593697_INS [dm3] 3R_22767975_INS [dm6]	A	AA	7.234e^-4	0.866	UPSTREAM CG13841 DOWNSTREAM CG43091 & 1 other INTRON Usp12-46 & 1 other
X	2657950	X_2657950_SNP [dm3] X_2763917_SNP [dm6]	C	A	7.246e^-4	0.866	INTRON kirre
X	2657959	X_2657959_SNP [dm3] X_2763926_SNP [dm6]	T	G	7.246e^-4	0.866	INTRON kirre
2L	1116734	2L_1116734_SNP [dm3] 2L_1116734_SNP [dm6]	A	C	7.275e^-4	0.866	INTRON Pino	TF binding site BDTNP1_TFBS_dl
2L	6972206	2L_6972206_INS [dm3] 2L_6972206_INS [dm6]	A	ATAAAA	7.288e^-4	0.866	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	6619234	2L_6619234_SNP [dm3] 2L_6619234_SNP [dm6]	G	A	7.296e^-4	0.866	INTRON CG11320 EXON CR44913
3R	23332101	3R_23332101_MNP [dm3] 3R_27506379_MNP [dm6]	AAA	GGT	7.302e^-4	0.866	INTERGENIC
X	3856676	X_3856676_SNP [dm3] X_3962643_SNP [dm6]	C	A	7.302e^-4	0.866	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA
2L	19621942	2L_19621942_SNP [dm3] 2L_19621942_SNP [dm6]	A	G	7.304e^-4	0.866	INTRON Lar
2R	6213142	2R_6213142_SNP [dm3] 2R_10325637_SNP [dm6]	C	A	7.332e^-4	0.866	INTRON CG42732
3R	19433508	3R_19433508_SNP [dm3] 3R_23607786_SNP [dm6]	G	A	7.364e^-4	0.866	INTRON CG31145	TF binding site mE1_TFBS_cad
3R	1809147	3R_1809147_SNP [dm3] 3R_5983425_SNP [dm6]	A	T	7.365e^-4	0.866	INTERGENIC
2L	1687660	2L_1687660_SNP [dm3] 2L_1687660_SNP [dm6]	T	C	7.372e^-4	0.866	INTRON chinmo	TF binding site mE1_TFBS_HSA
3R	18532295	3R_18532295_SNP [dm3] 3R_22706573_SNP [dm6]	C	T	7.379e^-4	0.866	SYNONYMOUS_CODING CG13842
3L	8796293	3L_8796293_SNP [dm3] 3L_8803193_SNP [dm6]	A	C	7.389e^-4	0.866	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2L	3461929	2L_3461929_SNP [dm3] 2L_3461929_SNP [dm6]	G	A	7.392e^-4	0.866	UTR_5_PRIME CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad
3L	18116410	3L_18116410_SNP [dm3] 3L_18123310_SNP [dm6]	C	T	7.430e^-4	0.866	INTERGENIC
3L	14396435	3L_14396435_SNP [dm3] 3L_14403335_SNP [dm6]	T	C	7.432e^-4	0.866	UTR_3_PRIME stwl UPSTREAM CG3868 DOWNSTREAM stwl
2L	21274503	2L_21274503_DEL [dm3] 2L_21274503_DEL [dm6]	TA	T	7.471e^-4	0.866	INTRON CG8671	TF binding site mE1_TFBS_cad
3R	18984007	3R_18984007_SNP [dm3] 3R_23158285_SNP [dm6]	G	C	7.477e^-4	0.866	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
X	19413027	X_19413027_SNP [dm3] X_19518994_SNP [dm6]	T	C	7.477e^-4	0.866	UTR_3_PRIME l_1_G0156 DOWNSTREAM l_1_G0156 & 1 other
2R	19518941	2R_19518941_SNP [dm3] 2R_23631418_SNP [dm6]	T	G	7.497e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE
2R	3149335	2R_3149335_SNP [dm3] 2R_7261830_SNP [dm6]	C	T	7.510e^-4	0.866	UPSTREAM CG1850 INTERGENIC
3R	18581672	3R_18581672_SNP [dm3] 3R_22755950_SNP [dm6]	T	A	7.548e^-4	0.866	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_Trl
2L	2971099	2L_2971099_DEL [dm3] 2L_2971099_DEL [dm6]	TG	T	7.556e^-4	0.866	INTRON Rrp1	TF binding site mE1_TFBS_sens
3R	17346635	3R_17346635_SNP [dm3] 3R_21520913_SNP [dm6]	T	G	7.559e^-4	0.866	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2R	3194041	2R_3194041_SNP [dm3] 2R_7306536_SNP [dm6]	T	G	7.565e^-4	0.866	INTERGENIC
3L	18151364	3L_18151364_SNP [dm3] 3L_18158264_SNP [dm6]	G	A	7.565e^-4	0.866	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7773860	2L_7773860_SNP [dm3] 2L_7773860_SNP [dm6]	C	T	7.565e^-4	0.866	INTRON CG7191
2R	18538508	2R_18538508_SNP [dm3] 2R_22651003_SNP [dm6]	A	C	7.573e^-4	0.866	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13682572	2L_13682572_SNP [dm3] 2L_13682572_SNP [dm6]	T	C	7.575e^-4	0.866	INTRON CG31814
X	4381528	X_4381528_SNP [dm3] X_4487495_SNP [dm6]	A	T	7.579e^-4	0.866	INTRON CR32773
3L	17930010	3L_17930010_SNP [dm3] 3L_17936910_SNP [dm6]	G	A	7.589e^-4	0.866	INTRON CG43174
2L	9412596	2L_9412596_SNP [dm3] 2L_9412596_SNP [dm6]	T	C	7.592e^-4	0.866	INTRON Shawl
2L	17219969	2L_17219969_SNP [dm3] 2L_17219969_SNP [dm6]	A	G	7.603e^-4	0.866	INTRON beat-IIIc
2R	16122527	2R_16122527_SNP [dm3] 2R_20235022_SNP [dm6]	A	T	7.617e^-4	0.866	START_GAINED CG44624 UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	16122529	2R_16122529_SNP [dm3] 2R_20235024_SNP [dm6]	G	C	7.617e^-4	0.866	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
3R	14037153	3R_14037153_SNP [dm3] 3R_18211431_SNP [dm6]	T	C	7.617e^-4	0.866	INTRON CG7985
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	7.630e^-4	0.866	INTRON Dh31
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	7.630e^-4	0.866	INTRON Dh31
2R	4646396	2R_4646396_SNP [dm3] 2R_8758891_SNP [dm6]	G	A	7.648e^-4	0.866	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16385013	2L_16385013_SNP [dm3] 2L_16385013_SNP [dm6]	G	A	7.699e^-4	0.866	INTERGENIC
3L	23194283	3L_23194283_DEL [dm3] 3L_23201183_DEL [dm6]	CAT	C	7.701e^-4	0.866	INTERGENIC	transposable element FlyBase
2R	16967536	2R_16967536_SNP [dm3] 2R_21080031_SNP [dm6]	A	C	7.707e^-4	0.866	UPSTREAM Treh INTRON Treh
2L	10461340	2L_10461340_SNP [dm3] 2L_10461340_SNP [dm6]	C	T	7.712e^-4	0.866	SPLICE_SITE_REGION LM408 INTRON LM408	TF binding site mE1_TFBS_cad
2R	16116937	2R_16116937_SNP [dm3] 2R_20229432_SNP [dm6]	T	A	7.735e^-4	0.866	UPSTREAM tRNA:G3:56EFa INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16715132	2L_16715132_SNP [dm3] 2L_16715132_SNP [dm6]	G	A	7.747e^-4	0.866	UPSTREAM Cyt-c-d INTRON CG31808
2R	5584979	2R_5584979_SNP [dm3] 2R_9697474_SNP [dm6]	A	C	7.752e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4497007	2L_4497007_SNP [dm3] 2L_4497007_SNP [dm6]	G	A	7.781e^-4	0.866	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18109489	3L_18109489_INS [dm3] 3L_18116389_INS [dm6]	C	CG	7.793e^-4	0.866	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3L	10028240	3L_10028240_SNP [dm3] 3L_10035140_SNP [dm6]	C	T	7.800e^-4	0.866	INTRON dpr6
2L	7814200	2L_7814200_INS [dm3] 2L_7814200_INS [dm6]	G	GG	7.806e^-4	0.866	UPSTREAM LanB1 INTRON LanB1
X	14622935	X_14622935_SNP [dm3] X_14728902_SNP [dm6]	T	G	7.811e^-4	0.866	INTRON NetB
X	4750320	X_4750320_SNP [dm3] X_4856287_SNP [dm6]	A	T	7.812e^-4	0.866	INTRON CG42594
2L	4708804	2L_4708804_SNP [dm3] 2L_4708804_SNP [dm6]	C	T	7.828e^-4	0.866	INTRON CG34351
2L	4708805	2L_4708805_DEL [dm3] 2L_4708805_DEL [dm6]	CCAGTCCGCTT...	C	7.828e^-4	0.866	INTRON CG34351
2L	6346314	2L_6346314_SNP [dm3] 2L_6346314_SNP [dm6]	G	A	7.831e^-4	0.866	DOWNSTREAM CG9497 & 1 other INTERGENIC
X	13463149	X_13463149_SNP [dm3] X_13569116_SNP [dm6]	T	A	7.831e^-4	0.866	INTRON Tango13
2R	12325317	2R_12325317_SNP [dm3] 2R_16437812_SNP [dm6]	C	T	7.835e^-4	0.866	INTERGENIC
X	10228208	X_10228208_SNP [dm3] X_10334175_SNP [dm6]	G	C	7.862e^-4	0.866	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
3R	26584230	3R_26584230_SNP [dm3] 3R_30758508_SNP [dm6]	A	G	7.871e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15373858	3R_15373858_SNP [dm3] 3R_19548136_SNP [dm6]	G	A	7.887e^-4	0.866	INTRON Dys
2R	6162597	2R_6162597_SNP [dm3] 2R_10275092_SNP [dm6]	G	C	7.887e^-4	0.866	UPSTREAM CAP INTRON CAP
3L	10458706	3L_10458706_SNP [dm3] 3L_10465606_SNP [dm6]	A	T	7.889e^-4	0.866	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTRON S-Lap3
3L	12093643	3L_12093643_SNP [dm3] 3L_12100543_SNP [dm6]	T	C	7.907e^-4	0.866	INTERGENIC
2L	10192161	2L_10192161_SNP [dm3] 2L_10192161_SNP [dm6]	A	G	7.908e^-4	0.866	UPSTREAM CG31874 INTRON Sur
3R	25359330	3R_25359330_SNP [dm3] 3R_29533608_SNP [dm6]	T	G	7.913e^-4	0.866	INTERGENIC
3L	2378364	3L_2378364_SNP [dm3] 3L_2378364_SNP [dm6]	T	C	7.926e^-4	0.866	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10131489	3L_10131489_SNP [dm3] 3L_10138389_SNP [dm6]	G	C	7.927e^-4	0.866	INTRON dpr6
3R	19614912	3R_19614912_SNP [dm3] 3R_23789190_SNP [dm6]	G	T	7.928e^-4	0.866	INTRON mbc
2R	10290173	2R_10290173_SNP [dm3] 2R_14402668_SNP [dm6]	C	T	7.942e^-4	0.866	INTERGENIC
2L	13786909	2L_13786909_SNP [dm3] 2L_13786909_SNP [dm6]	G	A	7.944e^-4	0.866	DOWNSTREAM CG31731 INTRON CG31731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18150072	3L_18150072_SNP [dm3] 3L_18156972_SNP [dm6]	A	G	7.957e^-4	0.866	SYNONYMOUS_CODING CG13699
3L	18150318	3L_18150318_SNP [dm3] 3L_18157218_SNP [dm6]	G	A	7.957e^-4	0.866	INTRON CG13699
3L	18161608	3L_18161608_SNP [dm3] 3L_18168508_SNP [dm6]	G	T	7.957e^-4	0.866	UTR_3_PRIME W
X	18554366	X_18554366_SNP [dm3] X_18660333_SNP [dm6]	A	C	7.981e^-4	0.866	SYNONYMOUS_CODING fu DOWNSTREAM CG6696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	1624891	2L_1624891_SNP [dm3] 2L_1624891_SNP [dm6]	G	A	7.981e^-4	0.866	EXON CR44603
2L	8324585	2L_8324585_SNP [dm3] 2L_8324585_SNP [dm6]	T	C	7.981e^-4	0.866	INTRON CG7781
2R	11954419	2R_11954419_INS [dm3] 2R_16066914_INS [dm6]	A	AA	7.981e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11954467	2R_11954467_SNP [dm3] 2R_16066962_SNP [dm6]	T	C	7.981e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21933897	X_21933897_SNP [dm3] X_22532061_SNP [dm6]	C	T	7.981e^-4	0.866	SYNONYMOUS_CODING S6kII INTRON CG17600
3L	3793900	3L_3793900_INS [dm3] 3L_3793900_INS [dm6]	G	AA	7.982e^-4	0.866	INTRON CG32264
3R	25055660	3R_25055660_SNP [dm3] 3R_29229938_SNP [dm6]	G	A	7.991e^-4	0.866	INTRON CG15817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5276344	2R_5276344_SNP [dm3] 2R_9388839_SNP [dm6]	G	A	8.000e^-4	0.866	START_GAINED CG13954 UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
3R	4418719	3R_4418719_SNP [dm3] 3R_8592997_SNP [dm6]	C	T	8.003e^-4	0.866	INTRON 5-HT2B
3R	25055617	3R_25055617_SNP [dm3] 3R_29229895_SNP [dm6]	A	C	8.010e^-4	0.866	INTRON CG15817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16492704	2L_16492704_SNP [dm3] 2L_16492704_SNP [dm6]	C	T	8.015e^-4	0.866	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2L	7012816	2L_7012816_SNP [dm3] 2L_7012816_SNP [dm6]	C	G	8.019e^-4	0.866	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
2L	12178171	2L_12178171_SNP [dm3] 2L_12178171_SNP [dm6]	G	C	8.030e^-4	0.866	UPSTREAM atilla INTRON aret	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1607523	2L_1607523_SNP [dm3] 2L_1607523_SNP [dm6]	A	G	8.045e^-4	0.866	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo
2R	12835564	2R_12835564_SNP [dm3] 2R_16948059_SNP [dm6]	T	A	8.045e^-4	0.866	SYNONYMOUS_CODING Vha16-4 UPSTREAM CG34190 DOWNSTREAM CG15614 & 1 other
3L	12537471	3L_12537471_SNP [dm3] 3L_12544371_SNP [dm6]	T	A	8.045e^-4	0.866	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537474	3L_12537474_SNP [dm3] 3L_12544374_SNP [dm6]	T	A	8.045e^-4	0.866	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537475	3L_12537475_SNP [dm3] 3L_12544375_SNP [dm6]	T	A	8.045e^-4	0.866	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537476	3L_12537476_INS [dm3] 3L_12544376_INS [dm6]	A	ACACAT	8.045e^-4	0.866	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13456946	3R_13456946_SNP [dm3] 3R_17631224_SNP [dm6]	G	T	8.047e^-4	0.866	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	9695118	2R_9695118_SNP [dm3] 2R_13807613_SNP [dm6]	G	T	8.050e^-4	0.866	INTRON stj
X	12154718	X_12154718_SNP [dm3] X_12260685_SNP [dm6]	G	A	8.057e^-4	0.866	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9123475	3R_9123475_SNP [dm3] 3R_13297753_SNP [dm6]	A	G	8.058e^-4	0.866	SYNONYMOUS_CODING CG8773
X	910471	X_910471_SNP [dm3] X_1016438_SNP [dm6]	C	G	8.061e^-4	0.866	INTRON su_w[a]_ & 1 other
2L	19478254	2L_19478254_SNP [dm3] 2L_19478254_SNP [dm6]	A	G	8.088e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19852918	2L_19852918_SNP [dm3] 2L_19852918_SNP [dm6]	C	T	8.092e^-4	0.866	INTRON sick
3L	20819411	3L_20819411_SNP [dm3] 3L_20826311_SNP [dm6]	T	A	8.095e^-4	0.866	INTRON Pka-R1
2L	12271792	2L_12271792_SNP [dm3] 2L_12271792_SNP [dm6]	C	T	8.136e^-4	0.866	SYNONYMOUS_CODING aret	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5683680	2R_5683680_SNP [dm3] 2R_9796175_SNP [dm6]	T	C	8.136e^-4	0.866	INTRON CG1688 & 1 other
2R	18773919	2R_18773919_SNP [dm3] 2R_22886396_SNP [dm6]	G	A	8.154e^-4	0.866	UPSTREAM asrij & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	6520747	X_6520747_SNP [dm3] X_6626714_SNP [dm6]	C	T	8.163e^-4	0.866	INTRON pigs
3L	12540052	3L_12540052_SNP [dm3] 3L_12546952_SNP [dm6]	G	A	8.164e^-4	0.866	INTRON sowah
3L	2891075	3L_2891075_SNP [dm3] 3L_2891075_SNP [dm6]	A	G	8.180e^-4	0.866	INTRON spz5
2L	15473934	2L_15473934_SNP [dm3] 2L_15473934_SNP [dm6]	G	T	8.190e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
3L	6654493	3L_6654493_SNP [dm3] 3L_6661393_SNP [dm6]	C	T	8.205e^-4	0.866	INTERGENIC
3L	4119051	3L_4119051_INS [dm3] 3L_4119051_INS [dm6]	A	ATCCATCGCAGTTTCTGTAT...	8.207e^-4	0.866	INTRON Chd64
3L	17736914	3L_17736914_SNP [dm3] 3L_17743814_SNP [dm6]	T	C	8.214e^-4	0.866	INTRON Ccn
3L	17740761	3L_17740761_SNP [dm3] 3L_17747661_SNP [dm6]	C	G	8.214e^-4	0.866	UPSTREAM CG6034 INTRON Ccn
2R	11389089	2R_11389089_SNP [dm3] 2R_15501584_SNP [dm6]	A	G	8.225e^-4	0.866	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
X	4302725	X_4302725_SNP [dm3] X_4408692_SNP [dm6]	A	C	8.229e^-4	0.866	INTRON CR32773
2R	11301821	2R_11301821_SNP [dm3] 2R_15414316_SNP [dm6]	A	G	8.244e^-4	0.866	INTRON CG43729
X	19200287	X_19200287_SNP [dm3] X_19306254_SNP [dm6]	A	T	8.248e^-4	0.866	UPSTREAM CG8051 INTRON CG8051
2L	7461008	2L_7461008_SNP [dm3] 2L_7461008_SNP [dm6]	A	T	8.252e^-4	0.866	UPSTREAM Gr28b INTRON Gr28b
3L	16142318	3L_16142318_SNP [dm3] 3L_16149218_SNP [dm6]	A	T	8.265e^-4	0.866	INTRON CG5151	TF binding site BDTNP1_TFBS_dl
2R	5276355	2R_5276355_SNP [dm3] 2R_9388850_SNP [dm6]	G	A	8.272e^-4	0.866	UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
X	5379355	X_5379355_SNP [dm3] X_5485322_SNP [dm6]	T	C	8.285e^-4	0.866	INTRON SPR
3L	2824937	3L_2824937_SNP [dm3] 3L_2824937_SNP [dm6]	A	T	8.301e^-4	0.866	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2825067	3L_2825067_SNP [dm3] 3L_2825067_SNP [dm6]	T	C	8.301e^-4	0.866	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19884514	2L_19884514_SNP [dm3] 2L_19884514_SNP [dm6]	A	G	8.304e^-4	0.866	INTRON sick
2R	15107647	2R_15107647_DEL [dm3] 2R_19220142_DEL [dm6]	TTTGCT	T	8.308e^-4	0.866	INTRON hppy
2L	9319733	2L_9319733_SNP [dm3] 2L_9319733_SNP [dm6]	A	T	8.329e^-4	0.866	INTERGENIC
2L	9319745	2L_9319745_SNP [dm3] 2L_9319745_SNP [dm6]	A	G	8.329e^-4	0.866	INTERGENIC
2L	9319849	2L_9319849_SNP [dm3] 2L_9319849_SNP [dm6]	T	C	8.329e^-4	0.866	INTERGENIC
2R	6162461	2R_6162461_DEL [dm3] 2R_10274956_DEL [dm6]	CCA	C	8.340e^-4	0.866	UPSTREAM CAP INTRON CAP
3L	7223191	3L_7223191_SNP [dm3] 3L_7230091_SNP [dm6]	G	C	8.345e^-4	0.866	INTERGENIC
2R	2788130	2R_2788130_SNP [dm3] 2R_6900625_SNP [dm6]	T	G	8.349e^-4	0.866	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2R	8889901	2R_8889901_SNP [dm3] 2R_13002396_SNP [dm6]	C	A	8.357e^-4	0.866	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	15169131	X_15169131_SNP [dm3] X_15275098_SNP [dm6]	A	G	8.358e^-4	0.866	INTERGENIC
2R	9384834	2R_9384834_SNP [dm3] 2R_13497329_SNP [dm6]	C	G	8.365e^-4	0.866	INTRON drk
2L	4107962	2L_4107962_SNP [dm3] 2L_4107962_SNP [dm6]	G	C	8.380e^-4	0.866	INTRON ed
3L	20090100	3L_20090100_SNP [dm3] 3L_20097000_SNP [dm6]	G	A	8.393e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20524302	2L_20524302_SNP [dm3] 2L_20524302_SNP [dm6]	T	C	8.438e^-4	0.866	INTERGENIC
3L	2586964	3L_2586964_SNP [dm3] 3L_2586964_SNP [dm6]	T	A	8.438e^-4	0.866	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13487145	3R_13487145_SNP [dm3] 3R_17661423_SNP [dm6]	T	A	8.438e^-4	0.866	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18845417	3R_18845417_SNP [dm3] 3R_23019695_SNP [dm6]	A	C	8.438e^-4	0.866	INTERGENIC
3R	9704980	3R_9704980_SNP [dm3] 3R_13879258_SNP [dm6]	C	T	8.438e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11878064	X_11878064_DEL [dm3] X_11984031_DEL [dm6]	ACAATCG	A	8.438e^-4	0.866	UPSTREAM cac INTRON cac
X	11878087	X_11878087_SNP [dm3] X_11984054_SNP [dm6]	C	T	8.438e^-4	0.866	UPSTREAM cac INTRON cac
X	11878137	X_11878137_SNP [dm3] X_11984104_SNP [dm6]	C	T	8.438e^-4	0.866	UPSTREAM cac INTRON cac
X	3890415	X_3890415_SNP [dm3] X_3996382_SNP [dm6]	A	G	8.438e^-4	0.866	INTERGENIC
2L	16753379	2L_16753379_SNP [dm3] 2L_16753379_SNP [dm6]	T	C	8.443e^-4	0.866	UTR_3_PRIME CG17912 UPSTREAM yellow-b
3L	18679473	3L_18679473_SNP [dm3] 3L_18686373_SNP [dm6]	C	A	8.443e^-4	0.866	UPSTREAM Cyp12c1 INTERGENIC
3L	18682205	3L_18682205_SNP [dm3] 3L_18689105_SNP [dm6]	A	G	8.443e^-4	0.866	INTERGENIC
3L	2568835	3L_2568835_SNP [dm3] 3L_2568835_SNP [dm6]	T	A	8.443e^-4	0.866	INTRON msn
3L	2568837	3L_2568837_SNP [dm3] 3L_2568837_SNP [dm6]	C	T	8.443e^-4	0.866	INTRON msn
X	12615879	X_12615879_SNP [dm3] X_12721846_SNP [dm6]	A	C	8.443e^-4	0.866	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	12618811	X_12618811_SNP [dm3] X_12724778_SNP [dm6]	T	C	8.443e^-4	0.866	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7460966	2L_7460966_SNP [dm3] 2L_7460966_SNP [dm6]	A	G	8.450e^-4	0.866	UPSTREAM Gr28b INTRON Gr28b
2L	8301992	2L_8301992_SNP [dm3] 2L_8301992_SNP [dm6]	G	A	8.450e^-4	0.866	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7773429	3L_7773429_SNP [dm3] 3L_7780329_SNP [dm6]	G	A	8.450e^-4	0.866	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
3R	13003312	3R_13003312_SNP [dm3] 3R_17177590_SNP [dm6]	C	T	8.450e^-4	0.866	INTRON Mur89F
3R	17947448	3R_17947448_DEL [dm3] 3R_22121726_DEL [dm6]	AA	G	8.450e^-4	0.866	INTRON CG42390
3L	10667029	3L_10667029_SNP [dm3] 3L_10673929_SNP [dm6]	T	G	8.452e^-4	0.866	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4161216	3L_4161216_SNP [dm3] 3L_4161216_SNP [dm6]	T	G	8.454e^-4	0.866	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7385056	2L_7385056_SNP [dm3] 2L_7385056_SNP [dm6]	G	C	8.475e^-4	0.866	NON_SYNONYMOUS_CODING CG5149 DOWNSTREAM ninaC
2L	4319474	2L_4319474_SNP [dm3] 2L_4319474_SNP [dm6]	C	A	8.497e^-4	0.866	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl DOWNSTREAM tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15066107	2R_15066107_SNP [dm3] 2R_19178602_SNP [dm6]	T	A	8.508e^-4	0.866	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17219872	2L_17219872_SNP [dm3] 2L_17219872_SNP [dm6]	T	C	8.515e^-4	0.866	INTRON beat-IIIc
2R	18196385	2R_18196385_SNP [dm3] 2R_22308880_SNP [dm6]	A	C	8.517e^-4	0.866	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2270689	X_2270689_SNP [dm3] X_2376656_SNP [dm6]	A	G	8.526e^-4	0.866	UTR_3_PRIME PsGEF INTRON PsGEF
3L	3254801	3L_3254801_SNP [dm3] 3L_3254801_SNP [dm6]	A	T	8.530e^-4	0.866	DOWNSTREAM CR43626 INTERGENIC
3L	3254804	3L_3254804_SNP [dm3] 3L_3254804_SNP [dm6]	T	G	8.530e^-4	0.866	DOWNSTREAM CR43626 INTERGENIC
3R	15428997	3R_15428997_SNP [dm3] 3R_19603275_SNP [dm6]	T	A	8.535e^-4	0.866	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
X	2999531	X_2999531_SNP [dm3] X_3105498_SNP [dm6]	C	T	8.543e^-4	0.866	INTRON kirre
2R	16450029	2R_16450029_SNP [dm3] 2R_20562524_SNP [dm6]	A	T	8.553e^-4	0.866	NON_SYNONYMOUS_CODING CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm EXON CR44653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5972672	2R_5972672_SNP [dm3] 2R_10085167_SNP [dm6]	T	C	8.559e^-4	0.866	UPSTREAM CG2269 DOWNSTREAM egr & 1 other INTERGENIC
2R	4682584	2R_4682584_SNP [dm3] 2R_8795079_SNP [dm6]	C	G	8.562e^-4	0.866	INTERGENIC
3L	18926039	3L_18926039_SNP [dm3] 3L_18932939_SNP [dm6]	G	T	8.568e^-4	0.866	UTR_5_PRIME CG32204
3L	8302666	3L_8302666_SNP [dm3] 3L_8309566_SNP [dm6]	T	A	8.581e^-4	0.866	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18389224	2L_18389224_SNP [dm3] 2L_18389224_SNP [dm6]	A	G	8.583e^-4	0.866	UTR_3_PRIME Fas3 INTRON Fas3
3R	16854997	3R_16854997_SNP [dm3] 3R_21029275_SNP [dm6]	T	C	8.594e^-4	0.866	INTRON Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4646967	2R_4646967_SNP [dm3] 2R_8759462_SNP [dm6]	A	G	8.595e^-4	0.866	UTR_3_PRIME CG8740	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1290501	3L_1290501_SNP [dm3] 3L_1290501_SNP [dm6]	T	G	8.595e^-4	0.866	INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13637598	X_13637598_SNP [dm3] X_13743565_SNP [dm6]	G	A	8.595e^-4	0.866	SYNONYMOUS_CODING Grip91	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14751974	3R_14751974_SNP [dm3] 3R_18926252_SNP [dm6]	A	C	8.621e^-4	0.866	SYNONYMOUS_CODING Xrp1 DOWNSTREAM Mpc1	TF binding site mE1_TFBS_cad
3R	16856391	3R_16856391_SNP [dm3] 3R_21030669_SNP [dm6]	C	T	8.625e^-4	0.866	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11490570	2L_11490570_SNP [dm3] 2L_11490570_SNP [dm6]	A	T	8.628e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22926788	3L_22926788_SNP [dm3] 3L_22933688_SNP [dm6]	A	C	8.638e^-4	0.866	INTERGENIC
3L	22926796	3L_22926796_SNP [dm3] 3L_22933696_SNP [dm6]	A	G	8.638e^-4	0.866	INTERGENIC
2L	15163297	2L_15163297_SNP [dm3] 2L_15163297_SNP [dm6]	C	T	8.644e^-4	0.866	UTR_3_PRIME CG4168
3R	15680876	3R_15680876_SNP [dm3] 3R_19855154_SNP [dm6]	T	C	8.646e^-4	0.866	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
2R	5815348	2R_5815348_SNP [dm3] 2R_9927843_SNP [dm6]	T	C	8.647e^-4	0.866	INTRON Mef2
2R	4154705	2R_4154705_SNP [dm3] 2R_8267200_SNP [dm6]	A	T	8.655e^-4	0.866	NON_SYNONYMOUS_CODING CG30375 DOWNSTREAM CG30371
2L	2263863	2L_2263863_SNP [dm3] 2L_2263863_SNP [dm6]	C	T	8.660e^-4	0.866	SYNONYMOUS_CODING CG4270 DOWNSTREAM CG34049
2L	6972806	2L_6972806_SNP [dm3] 2L_6972806_SNP [dm6]	C	T	8.669e^-4	0.866	DOWNSTREAM uif & 1 other INTERGENIC
3R	24123726	3R_24123726_SNP [dm3] 3R_28298004_SNP [dm6]	G	A	8.683e^-4	0.866	INTERGENIC
2R	5343280	2R_5343280_SNP [dm3] 2R_9455775_SNP [dm6]	G	A	8.688e^-4	0.866	UPSTREAM CG33757 INTRON Camta
3L	9085172	3L_9085172_SNP [dm3] 3L_9092072_SNP [dm6]	A	T	8.704e^-4	0.866	UTR_3_PRIME Tequila UPSTREAM CG32032
2L	1554613	2L_1554613_SNP [dm3] 2L_1554613_SNP [dm6]	G	A	8.707e^-4	0.866	UPSTREAM haf INTERGENIC
2L	1554655	2L_1554655_DEL [dm3] 2L_1554655_DEL [dm6]	TATTTT	A	8.707e^-4	0.866	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4943954	3L_4943954_SNP [dm3] 3L_4943954_SNP [dm6]	G	A	8.716e^-4	0.866	INTRON Con
2R	16650050	2R_16650050_SNP [dm3] 2R_20762545_SNP [dm6]	T	A	8.720e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16650056	2R_16650056_SNP [dm3] 2R_20762551_SNP [dm6]	T	C	8.720e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16650080	2R_16650080_SNP [dm3] 2R_20762575_SNP [dm6]	C	T	8.720e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6107953	2L_6107953_SNP [dm3] 2L_6107953_SNP [dm6]	T	C	8.721e^-4	0.866	INTRON stai
3L	3523369	3L_3523369_SNP [dm3] 3L_3523369_SNP [dm6]	C	T	8.722e^-4	0.866	INTRON Eip63E EXON CR45043
3L	6632417	3L_6632417_SNP [dm3] 3L_6639317_SNP [dm6]	C	G	8.722e^-4	0.866	INTERGENIC
3L	6633089	3L_6633089_SNP [dm3] 3L_6639989_SNP [dm6]	C	T	8.722e^-4	0.866	UPSTREAM CR45238 INTERGENIC
3L	6633090	3L_6633090_DEL [dm3] 3L_6639990_DEL [dm6]	TGAAGCCGCAA...	T	8.722e^-4	0.866	UPSTREAM CR45238 INTERGENIC
3L	6633976	3L_6633976_INS [dm3] 3L_6640876_INS [dm6]	C	CAAAATTACA	8.722e^-4	0.866	UPSTREAM CR45238 INTERGENIC
2R	9184007	2R_9184007_SNP [dm3] 2R_13296502_SNP [dm6]	A	C	8.725e^-4	0.866	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
X	12594045	X_12594045_SNP [dm3] X_12700012_SNP [dm6]	C	A	8.734e^-4	0.866	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11173163	X_11173163_SNP [dm3] X_11279130_SNP [dm6]	C	A	8.755e^-4	0.866	INTRON CG44422
3L	9019884	3L_9019884_SNP [dm3] 3L_9026784_SNP [dm6]	A	T	8.756e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6394111	3L_6394111_SNP [dm3] 3L_6401011_SNP [dm6]	A	G	8.769e^-4	0.866	START_GAINED CG42747 UTR_5_PRIME CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15445312	3L_15445312_SNP [dm3] 3L_15452212_SNP [dm6]	T	A	8.771e^-4	0.866	INTERGENIC
3L	15445319	3L_15445319_SNP [dm3] 3L_15452219_SNP [dm6]	G	A	8.771e^-4	0.866	INTERGENIC
3L	15445348	3L_15445348_SNP [dm3] 3L_15452248_SNP [dm6]	T	A	8.771e^-4	0.866	INTERGENIC
3R	18523538	3R_18523538_SNP [dm3] 3R_22697816_SNP [dm6]	C	A	8.828e^-4	0.866	NON_SYNONYMOUS_CODING cd UPSTREAM Cyp6d4
2R	8649145	2R_8649145_SNP [dm3] 2R_12761640_SNP [dm6]	C	T	8.829e^-4	0.866	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8904953	3L_8904953_SNP [dm3] 3L_8911853_SNP [dm6]	G	A	8.834e^-4	0.866	UPSTREAM Tsp66E INTRON mfr
3L	8904956	3L_8904956_SNP [dm3] 3L_8911856_SNP [dm6]	C	T	8.834e^-4	0.866	UPSTREAM Tsp66E INTRON mfr
2R	8870035	2R_8870035_SNP [dm3] 2R_12982530_SNP [dm6]	A	T	8.836e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12390220	X_12390220_SNP [dm3] X_12496187_SNP [dm6]	C	T	8.841e^-4	0.866	SYNONYMOUS_CODING Mks1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10352964	2R_10352964_SNP [dm3] 2R_14465459_SNP [dm6]	T	A	8.848e^-4	0.866	UTR_3_PRIME Oaz
2L	3435322	2L_3435322_SNP [dm3] 2L_3435322_SNP [dm6]	G	A	8.848e^-4	0.866	INTERGENIC
2R	19895314	2R_19895314_SNP [dm3] 2R_24007791_SNP [dm6]	C	A	8.849e^-4	0.866	INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	8324559	2L_8324559_SNP [dm3] 2L_8324559_SNP [dm6]	C	T	8.866e^-4	0.866	INTRON CG7781
2L	8324561	2L_8324561_DEL [dm3] 2L_8324561_DEL [dm6]	CCC	C	8.866e^-4	0.866	INTRON CG7781
2L	8324565	2L_8324565_SNP [dm3] 2L_8324565_SNP [dm6]	C	G	8.866e^-4	0.866	INTRON CG7781
3R	5602156	3R_5602156_SNP [dm3] 3R_9776434_SNP [dm6]	T	C	8.872e^-4	0.866	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7443916	2L_7443916_SNP [dm3] 2L_7443916_SNP [dm6]	A	G	8.874e^-4	0.866	SYNONYMOUS_CODING CG5973
2L	9660702	2L_9660702_SNP [dm3] 2L_9660702_SNP [dm6]	C	T	8.874e^-4	0.866	INTERGENIC
2R	14533654	2R_14533654_SNP [dm3] 2R_18646149_SNP [dm6]	T	G	8.874e^-4	0.866	INTRON SP2637
2R	19543187	2R_19543187_SNP [dm3] 2R_23655664_SNP [dm6]	A	G	8.874e^-4	0.866	DOWNSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4377001	2R_4377001_SNP [dm3] 2R_8489496_SNP [dm6]	C	T	8.874e^-4	0.866	INTRON mtt
3L	3459827	3L_3459827_SNP [dm3] 3L_3459827_SNP [dm6]	T	C	8.874e^-4	0.866	NON_SYNONYMOUS_CODING eIF5B	TF binding site BDTNP1_TFBS_dl
3L	9764695	3L_9764695_SNP [dm3] 3L_9771595_SNP [dm6]	C	T	8.874e^-4	0.866	INTRON CG8177
3L	9764714	3L_9764714_SNP [dm3] 3L_9771614_SNP [dm6]	T	C	8.874e^-4	0.866	INTRON CG8177
3R	11394087	3R_11394087_DEL [dm3] 3R_15568365_DEL [dm6]	GAAGG	G	8.874e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11394629	3R_11394629_SNP [dm3] 3R_15568907_SNP [dm6]	G	A	8.874e^-4	0.866	INTERGENIC
3R	11395821	3R_11395821_SNP [dm3] 3R_15570099_SNP [dm6]	T	A	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11396880	3R_11396880_SNP [dm3] 3R_15571158_SNP [dm6]	A	G	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11396884	3R_11396884_SNP [dm3] 3R_15571162_SNP [dm6]	G	A	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11413495	3R_11413495_SNP [dm3] 3R_15587773_SNP [dm6]	A	C	8.874e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413503	3R_11413503_SNP [dm3] 3R_15587781_SNP [dm6]	G	A	8.874e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413603	3R_11413603_SNP [dm3] 3R_15587881_SNP [dm6]	C	A	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413884	3R_11413884_SNP [dm3] 3R_15588162_SNP [dm6]	G	A	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413900	3R_11413900_SNP [dm3] 3R_15588178_SNP [dm6]	T	G	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413935	3R_11413935_SNP [dm3] 3R_15588213_SNP [dm6]	A	T	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11413992	3R_11413992_SNP [dm3] 3R_15588270_SNP [dm6]	C	A	8.874e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15327800	3R_15327800_SNP [dm3] 3R_19502078_SNP [dm6]	A	C	8.874e^-4	0.866	INTRON Dys
3R	24011627	3R_24011627_SNP [dm3] 3R_28185905_SNP [dm6]	T	C	8.874e^-4	0.866	INTRON CG34354
3R	24011659	3R_24011659_SNP [dm3] 3R_28185937_SNP [dm6]	T	A	8.874e^-4	0.866	INTRON CG34354
3L	13886071	3L_13886071_SNP [dm3] 3L_13892971_SNP [dm6]	G	T	8.894e^-4	0.866	INTRON dysc
3R	23973586	3R_23973586_SNP [dm3] 3R_28147864_SNP [dm6]	A	G	8.897e^-4	0.866	UTR_5_PRIME CG34354
2L	7385008	2L_7385008_INS [dm3] 2L_7385008_INS [dm6]	T	TTAT	8.898e^-4	0.866	DOWNSTREAM ninaC INTRON CG5149
3L	14074874	3L_14074874_SNP [dm3] 3L_14081774_SNP [dm6]	C	T	8.903e^-4	0.866	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3L	8882513	3L_8882513_SNP [dm3] 3L_8889413_SNP [dm6]	G	C	8.903e^-4	0.866	UTR_3_PRIME dally UPSTREAM CG43169
3R	9665526	3R_9665526_SNP [dm3] 3R_13839804_SNP [dm6]	G	A	8.903e^-4	0.866	UTR_5_PRIME CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1624727	2L_1624727_SNP [dm3] 2L_1624727_SNP [dm6]	G	A	8.930e^-4	0.866	EXON CR44603
X	16777807	X_16777807_SNP [dm3] X_16883774_SNP [dm6]	G	C	8.938e^-4	0.866	SYNONYMOUS_CODING CG9104 UPSTREAM Rcp DOWNSTREAM CG4872	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7085839	2R_7085839_DEL [dm3] 2R_11198334_DEL [dm6]	TTAATTAAT	T	8.940e^-4	0.866	UTR_5_PRIME shn INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7640407	2L_7640407_SNP [dm3] 2L_7640407_SNP [dm6]	A	T	8.944e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15546547	2R_15546547_SNP [dm3] 2R_19659042_SNP [dm6]	C	T	8.960e^-4	0.866	SYNONYMOUS_CODING CG15125 DOWNSTREAM CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11491125	2L_11491125_SNP [dm3] 2L_11491125_SNP [dm6]	T	A	8.969e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15445350	3L_15445350_SNP [dm3] 3L_15452250_SNP [dm6]	A	G	8.973e^-4	0.866	INTERGENIC
2R	3868988	2R_3868988_SNP [dm3] 2R_7981483_SNP [dm6]	G	A	8.981e^-4	0.866	INTRON ACC	TF binding site mE1_TFBS_cad
3L	20153373	3L_20153373_SNP [dm3] 3L_20160273_SNP [dm6]	G	A	9.010e^-4	0.866	INTRON CG42674
2R	8898282	2R_8898282_SNP [dm3] 2R_13010777_SNP [dm6]	T	A	9.024e^-4	0.866	INTERGENIC
2R	8898285	2R_8898285_SNP [dm3] 2R_13010780_SNP [dm6]	T	C	9.024e^-4	0.866	INTERGENIC
2L	15984259	2L_15984259_INS [dm3] 2L_15984259_INS [dm6]	A	ACAATTAGATG...	9.028e^-4	0.866	INTERGENIC
2L	15984275	2L_15984275_SNP [dm3] 2L_15984275_SNP [dm6]	C	A	9.028e^-4	0.866	INTERGENIC
2L	15984282	2L_15984282_SNP [dm3] 2L_15984282_SNP [dm6]	C	T	9.028e^-4	0.866	INTERGENIC
2L	2896211	2L_2896211_SNP [dm3] 2L_2896211_SNP [dm6]	C	T	9.064e^-4	0.866	INTRON lilli	TF binding site BDTNP1_TFBS_dl
2R	10327782	2R_10327782_SNP [dm3] 2R_14440277_SNP [dm6]	C	A	9.075e^-4	0.866	INTRON Oaz
X	12441704	X_12441704_SNP [dm3] X_12547671_SNP [dm6]	T	C	9.077e^-4	0.866	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18762013	2R_18762013_SNP [dm3] 2R_22874490_SNP [dm6]	T	G	9.131e^-4	0.866	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14580604	2R_14580604_INS [dm3] 2R_18693099_INS [dm6]	T	TT	9.138e^-4	0.866	INTRON Sik3
2L	8325929	2L_8325929_SNP [dm3] 2L_8325929_SNP [dm6]	A	G	9.148e^-4	0.866	UPSTREAM CG7781 INTERGENIC
3L	7933096	3L_7933096_SNP [dm3] 3L_7939996_SNP [dm6]	A	C	9.153e^-4	0.866	INTERGENIC
3R	26176177	3R_26176177_SNP [dm3] 3R_30350455_SNP [dm6]	G	C	9.156e^-4	0.866	INTRON hdc
2R	3857153	2R_3857153_SNP [dm3] 2R_7969648_SNP [dm6]	T	C	9.167e^-4	0.866	NON_SYNONYMOUS_CODING CG8726 UTR_3_PRIME CG8726 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11266092	X_11266092_SNP [dm3] X_11372059_SNP [dm6]	C	T	9.175e^-4	0.866	UPSTREAM dlg1 INTRON dlg1
3R	24031930	3R_24031930_SNP [dm3] 3R_28206208_SNP [dm6]	G	T	9.179e^-4	0.866	INTRON CG34354
X	12425281	X_12425281_SNP [dm3] X_12531248_SNP [dm6]	C	T	9.179e^-4	0.866	UPSTREAM CG43921 INTRON CG43921

By genomic position
Variant impact
Gene name

productivity3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results