DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.488e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.08985

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1734 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	18214453	X_18214453_SNP [dm3] X_18320420_SNP [dm6]	G	A	2.282e^-7	0.401	INTRON CG6023
2R	12672095	2R_12672095_DEL [dm3] 2R_16784590_DEL [dm6]	TTT	T	9.087e^-7	0.587	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14543767	2L_14543767_SNP [dm3] 2L_14543767_SNP [dm6]	T	C	1.335e^-6	0.587	INTERGENIC
2L	14543768	2L_14543768_SNP [dm3] 2L_14543768_SNP [dm6]	T	C	1.335e^-6	0.587	INTERGENIC
2R	16699352	2R_16699352_SNP [dm3] 2R_20811847_SNP [dm6]	T	G	2.329e^-6	0.657	INTERGENIC
3R	26931239	3R_26931239_SNP [dm3] 3R_31105517_SNP [dm6]	T	A	2.791e^-6	0.657	DOWNSTREAM CG11318 INTERGENIC
2L	12350492	2L_12350492_SNP [dm3] 2L_12350492_SNP [dm6]	A	C	4.435e^-6	0.657	INTRON bru-2
2R	12672231	2R_12672231_SNP [dm3] 2R_16784726_SNP [dm6]	A	G	4.465e^-6	0.657	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1036439	3R_1036439_SNP [dm3] 3R_5210717_SNP [dm6]	T	C	4.466e^-6	0.657	INTRON cno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1036440	3R_1036440_SNP [dm3] 3R_5210718_SNP [dm6]	C	T	4.466e^-6	0.657	INTRON cno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16571350	3R_16571350_SNP [dm3] 3R_20745628_SNP [dm6]	C	G	4.629e^-6	0.657	UPSTREAM CG31200 INTRON CG42322
3L	15742032	3L_15742032_DEL [dm3] 3L_15748932_DEL [dm6]	AT	A	5.614e^-6	0.657	DOWNSTREAM CR45240 INTERGENIC
3L	18147451	3L_18147451_SNP [dm3] 3L_18154351_SNP [dm6]	T	A	6.046e^-6	0.657	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14543771	2L_14543771_DEL [dm3] 2L_14543771_DEL [dm6]	AAAA	A	6.277e^-6	0.657	INTERGENIC
3R	24609047	3R_24609047_DEL [dm3] 3R_28783325_DEL [dm6]	TCAACTTAACTTTT...	T	6.303e^-6	0.657	INTERGENIC
X	12292250	X_12292250_SNP [dm3] X_12398217_SNP [dm6]	A	C	6.407e^-6	0.657	INTERGENIC
X	16249558	X_16249558_SNP [dm3] X_16355525_SNP [dm6]	C	T	6.900e^-6	0.657	UTR_3_PRIME sl
3L	18148426	3L_18148426_SNP [dm3] 3L_18155326_SNP [dm6]	T	C	7.418e^-6	0.657	NON_SYNONYMOUS_CODING CG13699
3R	16571356	3R_16571356_SNP [dm3] 3R_20745634_SNP [dm6]	A	G	9.234e^-6	0.657	UPSTREAM CG31200 INTRON CG42322
X	11310244	X_11310244_SNP [dm3] X_11416211_SNP [dm6]	T	C	9.249e^-6	0.657	UPSTREAM Gr10a INTRON Or10a
2R	14078263	2R_14078263_SNP [dm3] 2R_18190758_SNP [dm6]	C	G	9.494e^-6	0.657	INTRON CG33958
3L	4089486	3L_4089486_DEL [dm3] 3L_4089486_DEL [dm6]	CTGA	C	9.628e^-6	0.657	UPSTREAM Gad1 INTRON CG14989
2R	19151862	2R_19151862_SNP [dm3] 2R_23264339_SNP [dm6]	A	C	9.632e^-6	0.657	NON_SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3L	18147819	3L_18147819_SNP [dm3] 3L_18154719_SNP [dm6]	G	A	1.158e^-5	0.657	DOWNSTREAM CG7330 & 1 other INTERGENIC
2L	16378530	2L_16378530_SNP [dm3] 2L_16378530_SNP [dm6]	G	A	1.207e^-5	0.657	INTERGENIC
X	7258634	X_7258634_SNP [dm3] X_7364601_SNP [dm6]	G	T	1.262e^-5	0.657	INTRON CG1677 & 1 other
X	11310274	X_11310274_SNP [dm3] X_11416241_SNP [dm6]	G	A	1.282e^-5	0.657	UPSTREAM Gr10a INTRON Or10a
3R	7720793	3R_7720793_SNP [dm3] 3R_11895071_SNP [dm6]	G	C	1.336e^-5	0.657	INTRON Cad87A
3R	7721225	3R_7721225_SNP [dm3] 3R_11895503_SNP [dm6]	T	C	1.336e^-5	0.657	SYNONYMOUS_CODING Cad87A
X	18214870	X_18214870_SNP [dm3] X_18320837_SNP [dm6]	A	C	1.361e^-5	0.657	INTRON CG6023	TF binding site BDTNP1_TFBS_dl
2R	14078271	2R_14078271_SNP [dm3] 2R_18190766_SNP [dm6]	A	G	1.399e^-5	0.657	INTRON CG33958
X	11613371	X_11613371_SNP [dm3] X_11719338_SNP [dm6]	C	T	1.466e^-5	0.657	SYNONYMOUS_CODING prtp UPSTREAM Tango10	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15587773	3L_15587773_DEL [dm3] 3L_15594673_DEL [dm6]	GCAAAACTAATTCTTTACAA...	G	1.472e^-5	0.657	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21876858	2L_21876858_DEL [dm3] 2L_21876858_DEL [dm6]	AA	A	1.506e^-5	0.657	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26993061	3R_26993061_SNP [dm3] 3R_31167339_SNP [dm6]	G	A	1.506e^-5	0.657	SYNONYMOUS_CODING stops INTRON Gycbeta100B	TF binding site mE1_TFBS_inv
X	9469545	X_9469545_SNP [dm3] X_9575512_SNP [dm6]	G	A	1.531e^-5	0.657	SYNONYMOUS_CODING CG42395 INTRON CG32699
2R	8470630	2R_8470630_SNP [dm3] 2R_12583125_SNP [dm6]	G	A	1.541e^-5	0.657	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12328493	X_12328493_SNP [dm3] X_12434460_SNP [dm6]	G	A	1.562e^-5	0.657	INTRON Pkcdelta
3R	9342209	3R_9342209_DEL [dm3] 3R_13516487_DEL [dm6]	GT	G	1.578e^-5	0.657	INTERGENIC
3R	26931361	3R_26931361_SNP [dm3] 3R_31105639_SNP [dm6]	G	A	1.607e^-5	0.657	DOWNSTREAM CG11318 INTERGENIC
3R	24607964	3R_24607964_SNP [dm3] 3R_28782242_SNP [dm6]	A	G	1.683e^-5	0.657	INTERGENIC
2L	9399534	2L_9399534_SNP [dm3] 2L_9399534_SNP [dm6]	G	A	1.724e^-5	0.657	INTRON Shawl
3L	18147719	3L_18147719_DEL [dm3] 3L_18154619_DEL [dm6]	ACCATTAATATACATTTAGG...	A	1.788e^-5	0.657	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18147746	3L_18147746_SNP [dm3] 3L_18154646_SNP [dm6]	A	T	1.788e^-5	0.657	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9172481	2R_9172481_SNP [dm3] 2R_13284976_SNP [dm6]	A	G	1.921e^-5	0.657	INTRON Dh31-R
3R	26235301	3R_26235301_DEL [dm3] 3R_30409579_DEL [dm6]	CTC	C	1.934e^-5	0.657	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10121458	2R_10121458_SNP [dm3] 2R_14233953_SNP [dm6]	C	T	1.954e^-5	0.657	SYNONYMOUS_CODING Opa1 UPSTREAM mir-1016	TF binding site mE1_TFBS_sens
2R	11038936	2R_11038936_SNP [dm3] 2R_15151431_SNP [dm6]	T	A	2.016e^-5	0.657	INTERGENIC
2R	11038938	2R_11038938_INS [dm3] 2R_15151433_INS [dm6]	T	TTAAGTCA	2.016e^-5	0.657	INTERGENIC
2R	5103783	2R_5103783_SNP [dm3] 2R_9216278_SNP [dm6]	T	G	2.100e^-5	0.657	INTERGENIC
3R	15229120	3R_15229120_SNP [dm3] 3R_19403398_SNP [dm6]	G	A	2.173e^-5	0.657	UPSTREAM CG5316 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	15229743	3R_15229743_SNP [dm3] 3R_19404021_SNP [dm6]	C	T	2.173e^-5	0.657	SYNONYMOUS_CODING CG5316 UPSTREAM Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10031235	3R_10031235_SNP [dm3] 3R_14205513_SNP [dm6]	C	A	2.175e^-5	0.657	INTRON Dop1R1
3R	15318249	3R_15318249_SNP [dm3] 3R_19492527_SNP [dm6]	T	A	2.205e^-5	0.657	INTRON Dys
3R	15318252	3R_15318252_DEL [dm3] 3R_19492530_DEL [dm6]	GTACGTTTAAGGTTTCTTTG...	G	2.205e^-5	0.657	INTRON Dys
3R	15318315	3R_15318315_SNP [dm3] 3R_19492593_SNP [dm6]	C	G	2.205e^-5	0.657	INTRON Dys
3R	15318320	3R_15318320_SNP [dm3] 3R_19492598_SNP [dm6]	C	T	2.205e^-5	0.657	INTRON Dys
3R	15318356	3R_15318356_INS [dm3] 3R_19492634_INS [dm6]	A	AGCTA	2.205e^-5	0.657	INTRON Dys
2R	3057097	2R_3057097_SNP [dm3] 2R_7169592_SNP [dm6]	T	C	2.359e^-5	0.657	INTRON pk
3L	8618999	3L_8618999_SNP [dm3] 3L_8625899_SNP [dm6]	G	A	2.382e^-5	0.657	UPSTREAM Zasp66 INTRON Zasp66
3L	6571951	3L_6571951_SNP [dm3] 3L_6578851_SNP [dm6]	A	C	2.395e^-5	0.657	INTRON CG18769 & 1 other
3L	6571958	3L_6571958_SNP [dm3] 3L_6578858_SNP [dm6]	G	C	2.395e^-5	0.657	INTRON CG18769 & 1 other
3L	15582875	3L_15582875_SNP [dm3] 3L_15589775_SNP [dm6]	C	T	2.399e^-5	0.657	SYNONYMOUS_CODING RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5413614	3R_5413614_SNP [dm3] 3R_9587892_SNP [dm6]	C	A	2.409e^-5	0.657	INTRON P58IPK	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	5464927	3R_5464927_SNP [dm3] 3R_9639205_SNP [dm6]	C	A	2.431e^-5	0.657	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3R	5416745	3R_5416745_SNP [dm3] 3R_9591023_SNP [dm6]	C	T	2.620e^-5	0.698	UPSTREAM CG8312 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
X	10229161	X_10229161_SNP [dm3] X_10335128_SNP [dm6]	A	C	2.779e^-5	0.7	INTRON CG43740
3R	25038263	3R_25038263_SNP [dm3] 3R_29212541_SNP [dm6]	C	G	2.805e^-5	0.7	INTERGENIC
3L	18147582	3L_18147582_MNP [dm3] 3L_18154482_MNP [dm6]	TTC	CCG	2.935e^-5	0.7	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9269915	2R_9269915_SNP [dm3] 2R_13382410_SNP [dm6]	G	T	2.935e^-5	0.7	INTERGENIC
3R	24898726	3R_24898726_SNP [dm3] 3R_29073004_SNP [dm6]	T	C	2.998e^-5	0.7	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24898749	3R_24898749_SNP [dm3] 3R_29073027_SNP [dm6]	T	C	2.998e^-5	0.7	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	19945178	3R_19945178_SNP [dm3] 3R_24119456_SNP [dm6]	G	A	3.179e^-5	0.7	INTRON Rootletin
3L	18606915	3L_18606915_SNP [dm3] 3L_18613815_SNP [dm6]	T	A	3.228e^-5	0.7	INTRON CG4174 & 2 others
3L	18606933	3L_18606933_SNP [dm3] 3L_18613833_SNP [dm6]	A	T	3.228e^-5	0.7	INTRON CG4174 & 2 others
2R	18150530	2R_18150530_SNP [dm3] 2R_22263025_SNP [dm6]	G	A	3.298e^-5	0.7	SYNONYMOUS_CODING dve	TF binding site mE1_TFBS_chinmo
3R	25274912	3R_25274912_SNP [dm3] 3R_29449190_SNP [dm6]	G	A	3.322e^-5	0.7	INTRON Ptp99A
2L	12580486	2L_12580486_SNP [dm3] 2L_12580486_SNP [dm6]	A	G	3.498e^-5	0.7	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16347860	3R_16347860_SNP [dm3] 3R_20522138_SNP [dm6]	C	T	3.536e^-5	0.7	INTERGENIC
2L	4656980	2L_4656980_SNP [dm3] 2L_4656980_SNP [dm6]	A	G	3.638e^-5	0.7	INTERGENIC
2L	19158286	2L_19158286_SNP [dm3] 2L_19158286_SNP [dm6]	T	C	3.692e^-5	0.7	UPSTREAM brat INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19836399	2L_19836399_SNP [dm3] 2L_19836399_SNP [dm6]	C	A	3.795e^-5	0.7	INTRON sick	TF binding site mE1_TFBS_cad
3R	5416244	3R_5416244_SNP [dm3] 3R_9590522_SNP [dm6]	G	A	3.845e^-5	0.7	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17935045	2R_17935045_SNP [dm3] 2R_22047540_SNP [dm6]	A	T	3.915e^-5	0.7	INTERGENIC
X	12624618	X_12624618_SNP [dm3] X_12730585_SNP [dm6]	T	C	3.927e^-5	0.7	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9469491	X_9469491_SNP [dm3] X_9575458_SNP [dm6]	C	T	3.931e^-5	0.7	SYNONYMOUS_CODING CG42395 INTRON CG32699
3R	25237073	3R_25237073_SNP [dm3] 3R_29411351_SNP [dm6]	A	T	4.040e^-5	0.7	INTRON Ptp99A
3R	25237085	3R_25237085_SNP [dm3] 3R_29411363_SNP [dm6]	G	A	4.040e^-5	0.7	INTRON Ptp99A
3R	1734799	3R_1734799_SNP [dm3] 3R_5909077_SNP [dm6]	T	C	4.098e^-5	0.7	INTRON CG34113
X	15401964	X_15401964_DEL [dm3] X_15507931_DEL [dm6]	AGAAA	A	4.114e^-5	0.7	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26993703	3R_26993703_SNP [dm3] 3R_31167981_SNP [dm6]	A	T	4.146e^-5	0.7	INTRON Gycbeta100B & 1 other
2L	7461106	2L_7461106_SNP [dm3] 2L_7461106_SNP [dm6]	A	T	4.162e^-5	0.7	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_cad
X	8988674	X_8988674_SNP [dm3] X_9094641_SNP [dm6]	C	G	4.235e^-5	0.7	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3764992	X_3764992_SNP [dm3] X_3870959_SNP [dm6]	A	C	4.315e^-5	0.7	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3R	9342605	3R_9342605_SNP [dm3] 3R_13516883_SNP [dm6]	T	C	4.321e^-5	0.7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25372527	3R_25372527_SNP [dm3] 3R_29546805_SNP [dm6]	A	G	4.428e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22028633	2L_22028633_SNP [dm3] 2L_22028633_SNP [dm6]	C	T	4.487e^-5	0.7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20231829	3R_20231829_SNP [dm3] 3R_24406107_SNP [dm6]	G	C	4.560e^-5	0.7	INTRON nAChRalpha1
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	4.560e^-5	0.7	INTRON nAChRalpha1
X	21998566	X_21998566_SNP [dm3] X_22596730_SNP [dm6]	C	G	4.570e^-5	0.7	INTRON Cda4	transposable element FlyBase
2L	5022212	2L_5022212_SNP [dm3] 2L_5022212_SNP [dm6]	A	G	4.656e^-5	0.7	INTRON vkg
3R	18507462	3R_18507462_SNP [dm3] 3R_22681740_SNP [dm6]	A	T	4.656e^-5	0.7	UTR_3_PRIME CG45058	TF binding site mE1_TFBS_cad
3R	9201928	3R_9201928_SNP [dm3] 3R_13376206_SNP [dm6]	G	C	4.656e^-5	0.7	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25229934	3R_25229934_SNP [dm3] 3R_29404212_SNP [dm6]	G	A	4.706e^-5	0.7	INTRON Ptp99A
2L	4657044	2L_4657044_SNP [dm3] 2L_4657044_SNP [dm6]	A	G	4.943e^-5	0.7	INTERGENIC
3R	15318419	3R_15318419_SNP [dm3] 3R_19492697_SNP [dm6]	T	G	5.029e^-5	0.7	INTRON Dys
3R	15900810	3R_15900810_DEL [dm3] 3R_20075088_DEL [dm6]	CAAAACGC	C	5.029e^-5	0.7	INTERGENIC
3R	17752972	3R_17752972_SNP [dm3] 3R_21927250_SNP [dm6]	C	T	5.029e^-5	0.7	INTERGENIC
3R	17756569	3R_17756569_SNP [dm3] 3R_21930847_SNP [dm6]	C	A	5.029e^-5	0.7	INTERGENIC
X	14071780	X_14071780_SNP [dm3] X_14177747_SNP [dm6]	T	C	5.029e^-5	0.7	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
3L	2662578	3L_2662578_SNP [dm3] 3L_2662578_SNP [dm6]	G	A	5.049e^-5	0.7	SYNONYMOUS_CODING CG33234 INTRON Fife
X	7258785	X_7258785_SNP [dm3] X_7364752_SNP [dm6]	T	A	5.049e^-5	0.7	INTRON CG1677 & 1 other
X	7258786	X_7258786_SNP [dm3] X_7364753_SNP [dm6]	C	T	5.049e^-5	0.7	INTRON CG1677 & 1 other
X	18214550	X_18214550_SNP [dm3] X_18320517_SNP [dm6]	C	T	5.128e^-5	0.7	INTRON CG6023
2R	8350802	2R_8350802_SNP [dm3] 2R_12463297_SNP [dm6]	T	G	5.218e^-5	0.7	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	16992544	2L_16992544_SNP [dm3] 2L_16992544_SNP [dm6]	T	A	5.228e^-5	0.7	INTRON beat-IIIb
3L	17625618	3L_17625618_INS [dm3] 3L_17632518_INS [dm6]	C	CT	5.275e^-5	0.7	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2L	12234720	2L_12234720_SNP [dm3] 2L_12234720_SNP [dm6]	A	G	5.277e^-5	0.7	INTRON aret
X	13643177	X_13643177_SNP [dm3] X_13749144_SNP [dm6]	A	G	5.281e^-5	0.7	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15602071	3L_15602071_DEL [dm3] 3L_15608971_DEL [dm6]	TTCT	T	5.459e^-5	0.7	UTR_3_PRIME RhoGAP71E & 1 other
3R	15374673	3R_15374673_SNP [dm3] 3R_19548951_SNP [dm6]	A	T	5.492e^-5	0.7	INTRON Dys
2R	8350702	2R_8350702_SNP [dm3] 2R_12463197_SNP [dm6]	T	A	5.495e^-5	0.7	INTRON Lac
2R	9172447	2R_9172447_SNP [dm3] 2R_13284942_SNP [dm6]	T	C	5.528e^-5	0.7	INTRON Dh31-R
2R	9172450	2R_9172450_SNP [dm3] 2R_13284945_SNP [dm6]	A	G	5.528e^-5	0.7	INTRON Dh31-R
2R	9172455	2R_9172455_SNP [dm3] 2R_13284950_SNP [dm6]	T	A	5.528e^-5	0.7	INTRON Dh31-R
2R	609183	2R_609183_SNP [dm3] 2R_4721678_SNP [dm6]	C	T	5.831e^-5	0.7	INTRON Nipped-B	TF binding site mE1_TFBS_inv transposable element FlyBase
3R	19146976	3R_19146976_SNP [dm3] 3R_23321254_SNP [dm6]	T	A	5.831e^-5	0.7	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25360478	3R_25360478_SNP [dm3] 3R_29534756_SNP [dm6]	C	A	5.832e^-5	0.7	INTRON CR43613	TF binding site mE1_TFBS_chinmo
2R	9921808	2R_9921808_SNP [dm3] 2R_14034303_SNP [dm6]	T	C	5.846e^-5	0.7	INTRON mam
2L	4855078	2L_4855078_SNP [dm3] 2L_4855078_SNP [dm6]	T	C	5.997e^-5	0.7	INTRON pog	TF binding site mE1_TFBS_HSA
2L	5423684	2L_5423684_SNP [dm3] 2L_5423684_SNP [dm6]	T	G	6.049e^-5	0.7	INTERGENIC
2L	5423891	2L_5423891_SNP [dm3] 2L_5423891_SNP [dm6]	C	T	6.049e^-5	0.7	INTERGENIC
3R	26993833	3R_26993833_SNP [dm3] 3R_31168111_SNP [dm6]	C	T	6.100e^-5	0.7	SYNONYMOUS_CODING stops INTRON Gycbeta100B	TF binding site mE1_TFBS_Trl
2L	5645775	2L_5645775_SNP [dm3] 2L_5645775_SNP [dm6]	G	A	6.153e^-5	0.7	INTRON CG31646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3495925	2R_3495925_SNP [dm3] 2R_7608420_SNP [dm6]	A	T	6.246e^-5	0.7	SPLICE_SITE_DONOR CG1358 INTRON CG1358
3L	2662470	3L_2662470_SNP [dm3] 3L_2662470_SNP [dm6]	C	T	6.246e^-5	0.7	SYNONYMOUS_CODING CG33234 DOWNSTREAM CG33233 INTRON Fife
3L	477616	3L_477616_SNP [dm3] 3L_477616_SNP [dm6]	T	C	6.246e^-5	0.7	INTRON klar
3L	477617	3L_477617_SNP [dm3] 3L_477617_SNP [dm6]	G	A	6.246e^-5	0.7	INTRON klar
3L	6600485	3L_6600485_SNP [dm3] 3L_6607385_SNP [dm6]	A	G	6.246e^-5	0.7	NON_SYNONYMOUS_CODING CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9705971	3R_9705971_SNP [dm3] 3R_13880249_SNP [dm6]	G	A	6.246e^-5	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20557178	X_20557178_DEL [dm3] X_20686151_DEL [dm6]	GCACTGTAGCTTAAG...	G	6.246e^-5	0.7	UPSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20558809	X_20558809_SNP [dm3] X_20687782_SNP [dm6]	A	T	6.246e^-5	0.7	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	13618904	3R_13618904_SNP [dm3] 3R_17793182_SNP [dm6]	C	T	6.309e^-5	0.7	INTRON CG43102
3R	14688193	3R_14688193_SNP [dm3] 3R_18862471_SNP [dm6]	C	T	6.325e^-5	0.7	INTERGENIC
X	16661280	X_16661280_SNP [dm3] X_16767247_SNP [dm6]	T	A	6.453e^-5	0.7	INTRON if
3R	13618902	3R_13618902_SNP [dm3] 3R_17793180_SNP [dm6]	G	A	6.495e^-5	0.7	INTRON CG43102
X	10226999	X_10226999_SNP [dm3] X_10332966_SNP [dm6]	C	T	6.619e^-5	0.7	UPSTREAM CG43740 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10228633	X_10228633_INS [dm3] X_10334600_INS [dm6]	G	GTGGGATG	6.619e^-5	0.7	INTRON CG43740	TF binding site mE1_TFBS_HSA
X	10229320	X_10229320_SNP [dm3] X_10335287_SNP [dm6]	T	A	6.619e^-5	0.7	INTRON CG43740
X	10229339	X_10229339_SNP [dm3] X_10335306_SNP [dm6]	G	A	6.619e^-5	0.7	INTRON CG43740
X	10229349	X_10229349_DEL [dm3] X_10335316_DEL [dm6]	AGGTACA	A	6.619e^-5	0.7	INTRON CG43740
X	10229370	X_10229370_SNP [dm3] X_10335337_SNP [dm6]	T	G	6.619e^-5	0.7	INTRON CG43740
X	10231429	X_10231429_SNP [dm3] X_10337396_SNP [dm6]	C	T	6.619e^-5	0.7	INTRON CG43740
X	9973498	X_9973498_SNP [dm3] X_10079465_SNP [dm6]	G	A	6.619e^-5	0.7	NON_SYNONYMOUS_CODING ZAP3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21998539	X_21998539_SNP [dm3] X_22596703_SNP [dm6]	G	T	6.651e^-5	0.7	INTRON Cda4	transposable element FlyBase
2L	12339432	2L_12339432_SNP [dm3] 2L_12339432_SNP [dm6]	A	G	6.717e^-5	0.7	UTR_3_PRIME CG31862
2L	5022068	2L_5022068_SNP [dm3] 2L_5022068_SNP [dm6]	T	A	6.717e^-5	0.7	INTRON vkg
2L	7854633	2L_7854633_INS [dm3] 2L_7854633_INS [dm6]	G	GG	6.772e^-5	0.7	INTRON CG14535	TF binding site mE1_TFBS_cad
3L	19941520	3L_19941520_SNP [dm3] 3L_19948420_SNP [dm6]	G	A	6.959e^-5	0.7	INTRON Ac76E
2L	11204968	2L_11204968_SNP [dm3] 2L_11204968_SNP [dm6]	A	T	6.967e^-5	0.7	DOWNSTREAM CR43859 INTERGENIC
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	6.971e^-5	0.7	INTRON Ptp99A
3R	16703593	3R_16703593_SNP [dm3] 3R_20877871_SNP [dm6]	C	T	6.987e^-5	0.7	SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
2R	12343594	2R_12343594_SNP [dm3] 2R_16456089_SNP [dm6]	C	T	6.990e^-5	0.7	INTERGENIC
X	18565196	X_18565196_SNP [dm3] X_18671163_SNP [dm6]	G	T	7.008e^-5	0.7	INTERGENIC
2L	10077718	2L_10077718_SNP [dm3] 2L_10077718_SNP [dm6]	G	A	7.050e^-5	0.7	INTRON CG44153
X	15774461	X_15774461_SNP [dm3] X_15880428_SNP [dm6]	A	G	7.078e^-5	0.7	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_sens
3R	26993639	3R_26993639_SNP [dm3] 3R_31167917_SNP [dm6]	G	A	7.159e^-5	0.7	INTRON Gycbeta100B & 1 other
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	7.218e^-5	0.7	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	17721668	3R_17721668_DEL [dm3] 3R_21895946_DEL [dm6]	ATTA	C	7.341e^-5	0.7	INTRON CG6678
2R	2716614	2R_2716614_SNP [dm3] 2R_6829109_SNP [dm6]	G	A	7.355e^-5	0.7	INTRON CG15236	TF binding site mE1_TFBS_chinmo
2L	11947420	2L_11947420_DEL [dm3] 2L_11947420_DEL [dm6]	TCT	T	7.417e^-5	0.7	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	11038836	2R_11038836_SNP [dm3] 2R_15151331_SNP [dm6]	A	C	7.418e^-5	0.7	INTERGENIC
2R	11038839	2R_11038839_SNP [dm3] 2R_15151334_SNP [dm6]	C	T	7.418e^-5	0.7	INTERGENIC
2R	11038967	2R_11038967_DEL [dm3] 2R_15151462_DEL [dm6]	CACATAATTAGCTCTGCAAT...	C	7.418e^-5	0.7	INTERGENIC
X	10056245	X_10056245_SNP [dm3] X_10162212_SNP [dm6]	C	T	7.418e^-5	0.7	INTRON CR44894 & 1 other
X	10229431	X_10229431_SNP [dm3] X_10335398_SNP [dm6]	T	G	7.418e^-5	0.7	INTRON CG43740
X	10229459	X_10229459_SNP [dm3] X_10335426_SNP [dm6]	A	G	7.418e^-5	0.7	INTRON CG43740
X	10229608	X_10229608_SNP [dm3] X_10335575_SNP [dm6]	T	A	7.418e^-5	0.7	INTRON CG43740
X	10229626	X_10229626_SNP [dm3] X_10335593_SNP [dm6]	A	G	7.418e^-5	0.7	INTRON CG43740
X	10230752	X_10230752_SNP [dm3] X_10336719_SNP [dm6]	G	A	7.418e^-5	0.7	INTRON CG43740
X	10231225	X_10231225_SNP [dm3] X_10337192_SNP [dm6]	C	A	7.418e^-5	0.7	INTRON CG43740
X	10231783	X_10231783_SNP [dm3] X_10337750_SNP [dm6]	C	G	7.418e^-5	0.7	INTRON CG43740
3R	10031356	3R_10031356_SNP [dm3] 3R_14205634_SNP [dm6]	A	C	7.434e^-5	0.7	INTRON Dop1R1
3R	17803451	3R_17803451_SNP [dm3] 3R_21977729_SNP [dm6]	C	T	7.441e^-5	0.7	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19826867	2L_19826867_SNP [dm3] 2L_19826867_SNP [dm6]	C	A	7.456e^-5	0.7	UTR_5_PRIME sick UPSTREAM sick INTRON sick
2R	10841392	2R_10841392_SNP [dm3] 2R_14953887_SNP [dm6]	G	A	7.589e^-5	0.7	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3495870	2R_3495870_DEL [dm3] 2R_7608365_DEL [dm6]	TATTAGATTATCGAC...	T	7.589e^-5	0.7	INTRON CG1358
2R	3495886	2R_3495886_SNP [dm3] 2R_7608381_SNP [dm6]	A	G	7.589e^-5	0.7	INTRON CG1358
3R	5662556	3R_5662556_SNP [dm3] 3R_9836834_SNP [dm6]	A	G	7.598e^-5	0.7	INTRON Teh1
3R	24609426	3R_24609426_SNP [dm3] 3R_28783704_SNP [dm6]	T	C	7.711e^-5	0.7	INTERGENIC
X	15089575	X_15089575_SNP [dm3] X_15195542_SNP [dm6]	G	C	7.800e^-5	0.7	INTERGENIC
3L	1132324	3L_1132324_SNP [dm3] 3L_1132324_SNP [dm6]	G	A	7.914e^-5	0.7	INTERGENIC	regulatory region REDfly_CRMs
3L	17289600	3L_17289600_SNP [dm3] 3L_17296500_SNP [dm6]	G	A	7.927e^-5	0.7	INTERGENIC
2L	5146045	2L_5146045_DEL [dm3] 2L_5146045_DEL [dm6]	CAATTGTTGTTGCTGCC...	C	8.059e^-5	0.7	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3607138	3L_3607138_DEL [dm3] 3L_3607138_DEL [dm6]	TGGT	T	8.164e^-5	0.7	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26558454	3R_26558454_SNP [dm3] 3R_30732732_SNP [dm6]	G	A	8.166e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15375147	3R_15375147_SNP [dm3] 3R_19549425_SNP [dm6]	G	A	8.184e^-5	0.7	INTRON Dys
3L	6249874	3L_6249874_SNP [dm3] 3L_6256774_SNP [dm6]	G	T	8.201e^-5	0.7	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1019522	3R_1019522_SNP [dm3] 3R_5193800_SNP [dm6]	G	A	8.322e^-5	0.7	INTRON cno
2L	11204750	2L_11204750_INS [dm3] 2L_11204750_INS [dm6]	G	CT	8.425e^-5	0.7	DOWNSTREAM CR43859 INTERGENIC
2R	4934894	2R_4934894_SNP [dm3] 2R_9047389_SNP [dm6]	A	T	8.464e^-5	0.7	INTRON CG13743
2L	3461929	2L_3461929_SNP [dm3] 2L_3461929_SNP [dm6]	G	A	8.508e^-5	0.7	UTR_5_PRIME CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad
2R	18465194	2R_18465194_INS [dm3] 2R_22577689_INS [dm6]	A	AA	8.570e^-5	0.7	INTRON dnr1
3L	15742384	3L_15742384_SNP [dm3] 3L_15749284_SNP [dm6]	A	T	8.786e^-5	0.7	DOWNSTREAM CR45240 INTERGENIC
3L	12837007	3L_12837007_SNP [dm3] 3L_12843907_SNP [dm6]	T	C	8.877e^-5	0.7	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	11204735	2L_11204735_SNP [dm3] 2L_11204735_SNP [dm6]	G	A	8.911e^-5	0.7	DOWNSTREAM CR43859 INTERGENIC
2L	11204736	2L_11204736_SNP [dm3] 2L_11204736_SNP [dm6]	G	A	8.911e^-5	0.7	DOWNSTREAM CR43859 INTERGENIC
3R	26505273	3R_26505273_SNP [dm3] 3R_30679551_SNP [dm6]	G	A	8.933e^-5	0.7	INTERGENIC
3R	15847335	3R_15847335_INS [dm3] 3R_20021613_INS [dm6]	A	AG	8.943e^-5	0.7	UPSTREAM psidin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	18214724	X_18214724_SNP [dm3] X_18320691_SNP [dm6]	G	A	8.950e^-5	0.7	INTRON CG6023	TF binding site BDTNP1_TFBS_dl
3R	4699081	3R_4699081_DEL [dm3] 3R_8873359_DEL [dm6]	ATGATAGATA	A	8.959e^-5	0.7	INTRON pyd
2L	15126808	2L_15126808_SNP [dm3] 2L_15126808_SNP [dm6]	A	G	8.985e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19824334	2L_19824334_SNP [dm3] 2L_19824334_SNP [dm6]	C	T	9.140e^-5	0.7	INTRON sick
X	10223529	X_10223529_SNP [dm3] X_10329496_SNP [dm6]	T	C	9.147e^-5	0.7	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other
X	10223885	X_10223885_SNP [dm3] X_10329852_SNP [dm6]	C	A	9.147e^-5	0.7	START_GAINED Gip UTR_5_PRIME Gip DOWNSTREAM CG2909 & 1 other
X	10224936	X_10224936_SNP [dm3] X_10330903_SNP [dm6]	T	G	9.147e^-5	0.7	NON_SYNONYMOUS_CODING CG15306	TF binding site mE1_TFBS_sens
X	10225175	X_10225175_SNP [dm3] X_10331142_SNP [dm6]	T	A	9.147e^-5	0.7	SYNONYMOUS_CODING CG15306
X	10228165	X_10228165_SNP [dm3] X_10334132_SNP [dm6]	T	G	9.147e^-5	0.7	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
X	10228188	X_10228188_SNP [dm3] X_10334155_SNP [dm6]	C	T	9.147e^-5	0.7	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
X	10228191	X_10228191_SNP [dm3] X_10334158_SNP [dm6]	A	G	9.147e^-5	0.7	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
X	10228363	X_10228363_SNP [dm3] X_10334330_SNP [dm6]	T	C	9.147e^-5	0.7	INTRON CG43740
X	10228397	X_10228397_SNP [dm3] X_10334364_SNP [dm6]	G	A	9.147e^-5	0.7	INTRON CG43740
X	10228458	X_10228458_SNP [dm3] X_10334425_SNP [dm6]	G	A	9.147e^-5	0.7	INTRON CG43740
X	10228526	X_10228526_SNP [dm3] X_10334493_SNP [dm6]	C	T	9.147e^-5	0.7	INTRON CG43740	TF binding site mE1_TFBS_HSA
X	10228647	X_10228647_SNP [dm3] X_10334614_SNP [dm6]	T	C	9.147e^-5	0.7	INTRON CG43740	TF binding site mE1_TFBS_HSA
3L	15742023	3L_15742023_SNP [dm3] 3L_15748923_SNP [dm6]	A	T	9.210e^-5	0.7	DOWNSTREAM CR45240 INTERGENIC
3L	15742024	3L_15742024_INS [dm3] 3L_15748924_INS [dm6]	G	GGT	9.210e^-5	0.7	DOWNSTREAM CR45240 INTERGENIC
2R	16062015	2R_16062015_SNP [dm3] 2R_20174510_SNP [dm6]	T	C	9.221e^-5	0.7	INTERGENIC
3R	24609764	3R_24609764_SNP [dm3] 3R_28784042_SNP [dm6]	G	T	9.369e^-5	0.7	INTERGENIC
3R	10016751	3R_10016751_SNP [dm3] 3R_14191029_SNP [dm6]	G	T	9.381e^-5	0.7	INTRON Dop1R1
X	21232198	X_21232198_SNP [dm3] X_21361171_SNP [dm6]	C	T	9.425e^-5	0.7	UTR_3_PRIME Sep1
3R	26993628	3R_26993628_SNP [dm3] 3R_31167906_SNP [dm6]	G	A	9.490e^-5	0.7	INTRON Gycbeta100B & 1 other
2L	4425328	2L_4425328_SNP [dm3] 2L_4425328_SNP [dm6]	A	G	9.514e^-5	0.7	INTRON CG15431
2L	4432858	2L_4432858_SNP [dm3] 2L_4432858_SNP [dm6]	C	A	9.514e^-5	0.7	INTRON CG15431
2L	4432862	2L_4432862_SNP [dm3] 2L_4432862_SNP [dm6]	A	C	9.514e^-5	0.7	INTRON CG15431
2L	4432869	2L_4432869_SNP [dm3] 2L_4432869_SNP [dm6]	A	T	9.514e^-5	0.7	INTRON CG15431
2R	3264665	2R_3264665_SNP [dm3] 2R_7377160_SNP [dm6]	C	T	9.514e^-5	0.7	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6099207	X_6099207_SNP [dm3] X_6205174_SNP [dm6]	T	A	9.514e^-5	0.7	INTERGENIC
2R	9172415	2R_9172415_SNP [dm3] 2R_13284910_SNP [dm6]	G	A	9.535e^-5	0.7	INTRON Dh31-R
X	10230906	X_10230906_SNP [dm3] X_10336873_SNP [dm6]	T	G	9.564e^-5	0.7	INTRON CG43740
3L	1809379	3L_1809379_SNP [dm3] 3L_1809379_SNP [dm6]	A	C	9.703e^-5	0.706	INTERGENIC
X	10471294	X_10471294_INS [dm3] X_10577261_INS [dm6]	T	TT	9.717e^-5	0.706	INTRON spri
3R	26992948	3R_26992948_SNP [dm3] 3R_31167226_SNP [dm6]	T	G	9.795e^-5	0.709	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
2R	8840252	2R_8840252_SNP [dm3] 2R_12952747_SNP [dm6]	A	T	9.860e^-5	0.71	UPSTREAM CG13321 & 2 others INTERGENIC
3L	5222115	3L_5222115_SNP [dm3] 3L_5229015_SNP [dm6]	C	T	1.029e^-4	0.729	INTRON shep
3R	14675005	3R_14675005_SNP [dm3] 3R_18849283_SNP [dm6]	T	A	1.029e^-4	0.729	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2660554	3L_2660554_SNP [dm3] 3L_2660554_SNP [dm6]	C	T	1.033e^-4	0.729	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife
2L	14571163	2L_14571163_SNP [dm3] 2L_14571163_SNP [dm6]	A	T	1.036e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12836929	3L_12836929_SNP [dm3] 3L_12843829_SNP [dm6]	C	T	1.040e^-4	0.729	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	18214779	X_18214779_SNP [dm3] X_18320746_SNP [dm6]	T	G	1.040e^-4	0.729	INTRON CG6023	TF binding site BDTNP1_TFBS_dl
X	10228454	X_10228454_SNP [dm3] X_10334421_SNP [dm6]	A	G	1.041e^-4	0.729	INTRON CG43740
2R	6804818	2R_6804818_SNP [dm3] 2R_10917313_SNP [dm6]	A	T	1.059e^-4	0.736	INTERGENIC
2R	6804820	2R_6804820_SNP [dm3] 2R_10917315_SNP [dm6]	T	G	1.059e^-4	0.736	INTERGENIC
2R	9901605	2R_9901605_SNP [dm3] 2R_14014100_SNP [dm6]	A	T	1.068e^-4	0.739	INTRON mam
3L	16400782	3L_16400782_SNP [dm3] 3L_16407682_SNP [dm6]	G	A	1.075e^-4	0.741	INTRON fax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15592390	3L_15592390_SNP [dm3] 3L_15599290_SNP [dm6]	G	T	1.080e^-4	0.742	INTRON RhoGAP71E
3L	8684853	3L_8684853_DEL [dm3] 3L_8691753_DEL [dm6]	TACCATT	T	1.087e^-4	0.744	UPSTREAM CR44526 INTERGENIC
3R	17217796	3R_17217796_SNP [dm3] 3R_21392074_SNP [dm6]	C	T	1.112e^-4	0.749	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	18147600	3L_18147600_DEL [dm3] 3L_18154500_DEL [dm6]	AA	A	1.115e^-4	0.749	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18651258	2R_18651258_SNP [dm3] 2R_22763753_SNP [dm6]	C	A	1.117e^-4	0.749	UTR_5_PRIME CG13527 INTRON CG42260
X	10230801	X_10230801_SNP [dm3] X_10336768_SNP [dm6]	G	A	1.118e^-4	0.749	INTRON CG43740
X	12028940	X_12028940_SNP [dm3] X_12134907_SNP [dm6]	C	T	1.126e^-4	0.749	INTRON Ten-a
3R	16571322	3R_16571322_DEL [dm3] 3R_20745600_DEL [dm6]	TTTGCTCACAGAC...	G	1.130e^-4	0.749	UPSTREAM CG31200 INTRON CG42322
X	8151420	X_8151420_SNP [dm3] X_8257387_SNP [dm6]	A	T	1.131e^-4	0.749	INTRON CG1632
3L	13376518	3L_13376518_SNP [dm3] 3L_13383418_SNP [dm6]	C	A	1.132e^-4	0.749	NON_SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9401263	2L_9401263_DEL [dm3] 2L_9401263_DEL [dm6]	TT	T	1.134e^-4	0.749	INTRON Shawl
X	10228381	X_10228381_SNP [dm3] X_10334348_SNP [dm6]	C	A	1.137e^-4	0.749	INTRON CG43740
X	14962447	X_14962447_SNP [dm3] X_15068414_SNP [dm6]	G	A	1.142e^-4	0.749	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9706014	3R_9706014_SNP [dm3] 3R_13880292_SNP [dm6]	T	A	1.152e^-4	0.75	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10229789	X_10229789_SNP [dm3] X_10335756_SNP [dm6]	A	T	1.162e^-4	0.75	INTRON CG43740
X	10018336	X_10018336_SNP [dm3] X_10124303_SNP [dm6]	A	G	1.170e^-4	0.75	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	9938360	X_9938360_SNP [dm3] X_10044327_SNP [dm6]	T	G	1.175e^-4	0.75	SYNONYMOUS_CODING Cht6 DOWNSTREAM CR45185 INTRON Cht6
2L	12412987	2L_12412987_SNP [dm3] 2L_12412987_SNP [dm6]	T	G	1.176e^-4	0.75	INTRON vir-1
3L	3440917	3L_3440917_SNP [dm3] 3L_3440917_SNP [dm6]	C	A	1.181e^-4	0.75	INTRON eIF5B	TF binding site mE1_TFBS_HSA
2L	14571147	2L_14571147_SNP [dm3] 2L_14571147_SNP [dm6]	G	T	1.181e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	22057457	X_22057457_SNP [dm3] X_22655621_SNP [dm6]	T	A	1.183e^-4	0.75	INTERGENIC
3L	7850534	3L_7850534_SNP [dm3] 3L_7857434_SNP [dm6]	T	A	1.183e^-4	0.75	INTRON Pdp1
3R	13626819	3R_13626819_SNP [dm3] 3R_17801097_SNP [dm6]	G	T	1.189e^-4	0.75	DOWNSTREAM CG17806 INTRON CG17803
2L	9403944	2L_9403944_SNP [dm3] 2L_9403944_SNP [dm6]	G	T	1.199e^-4	0.75	INTRON Shawl
3R	26558457	3R_26558457_SNP [dm3] 3R_30732735_SNP [dm6]	C	G	1.199e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19151948	2R_19151948_SNP [dm3] 2R_23264425_SNP [dm6]	A	G	1.202e^-4	0.75	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
2R	14837390	2R_14837390_SNP [dm3] 2R_18949885_SNP [dm6]	C	T	1.203e^-4	0.75	INTRON sano	TF binding site BDTNP1_TFBS_twi
2L	11874120	2L_11874120_SNP [dm3] 2L_11874120_SNP [dm6]	T	C	1.218e^-4	0.756	INTRON Pde1c
3R	9162381	3R_9162381_SNP [dm3] 3R_13336659_SNP [dm6]	A	G	1.230e^-4	0.759	INTERGENIC
3R	9162387	3R_9162387_SNP [dm3] 3R_13336665_SNP [dm6]	A	G	1.230e^-4	0.759	INTERGENIC
2R	19550077	2R_19550077_SNP [dm3] 2R_23662554_SNP [dm6]	C	T	1.265e^-4	0.776	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
3L	20065364	3L_20065364_SNP [dm3] 3L_20072264_SNP [dm6]	T	A	1.269e^-4	0.776	INTRON sNPF-R
3R	16703403	3R_16703403_SNP [dm3] 3R_20877681_SNP [dm6]	A	G	1.271e^-4	0.776	UPSTREAM TotZ DOWNSTREAM CR44048 INTERGENIC
3L	24467225	3L_24467225_SNP [dm3] 3L_24474125_SNP [dm6]	T	C	1.284e^-4	0.776	INTERGENIC
3L	24467226	3L_24467226_SNP [dm3] 3L_24474126_SNP [dm6]	A	T	1.284e^-4	0.776	INTERGENIC
2L	7212895	2L_7212895_SNP [dm3] 2L_7212895_SNP [dm6]	G	A	1.285e^-4	0.776	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12294451	2L_12294451_INS [dm3] 2L_12294451_INS [dm6]	C	CATCAAATTTC...	1.298e^-4	0.781	INTRON aret
3L	460878	3L_460878_SNP [dm3] 3L_460878_SNP [dm6]	G	A	1.308e^-4	0.785	INTRON klar
X	10229518	X_10229518_SNP [dm3] X_10335485_SNP [dm6]	T	A	1.317e^-4	0.788	INTRON CG43740
2R	3411175	2R_3411175_SNP [dm3] 2R_7523670_SNP [dm6]	T	G	1.331e^-4	0.789	NON_SYNONYMOUS_CODING Orc1	TF binding site mE1_TFBS_cad
2R	3411314	2R_3411314_SNP [dm3] 2R_7523809_SNP [dm6]	T	C	1.331e^-4	0.789	SYNONYMOUS_CODING Orc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17750442	3R_17750442_SNP [dm3] 3R_21924720_SNP [dm6]	G	C	1.340e^-4	0.789	INTERGENIC
3R	17750445	3R_17750445_SNP [dm3] 3R_21924723_SNP [dm6]	G	C	1.340e^-4	0.789	INTERGENIC
X	7234225	X_7234225_INS [dm3] X_7340192_INS [dm6]	T	TT	1.347e^-4	0.789	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	1200414	3R_1200414_SNP [dm3] 3R_5374692_SNP [dm6]	C	A	1.350e^-4	0.789	UPSTREAM CG14667 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk mE1_TFBS_Ubx
X	13228378	X_13228378_SNP [dm3] X_13334345_SNP [dm6]	G	T	1.357e^-4	0.789	INTERGENIC
3R	9162370	3R_9162370_SNP [dm3] 3R_13336648_SNP [dm6]	T	C	1.358e^-4	0.789	INTERGENIC
X	10228453	X_10228453_SNP [dm3] X_10334420_SNP [dm6]	G	T	1.360e^-4	0.789	INTRON CG43740
X	9398828	X_9398828_DEL [dm3] X_9504795_DEL [dm6]	GGT	A	1.382e^-4	0.797	UTR_3_PRIME CG32700
2L	1193958	2L_1193958_SNP [dm3] 2L_1193958_SNP [dm6]	T	A	1.393e^-4	0.797	INTRON CG5001
X	10017418	X_10017418_SNP [dm3] X_10123385_SNP [dm6]	G	A	1.397e^-4	0.797	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	9398805	2L_9398805_MNP [dm3] 2L_9398805_MNP [dm6]	TGG	AAT	1.407e^-4	0.797	UPSTREAM CG4438 INTRON Shawl
3L	3607167	3L_3607167_SNP [dm3] 3L_3607167_SNP [dm6]	G	T	1.412e^-4	0.797	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4118884	3L_4118884_SNP [dm3] 3L_4118884_SNP [dm6]	A	T	1.415e^-4	0.797	INTRON Chd64
3L	4118885	3L_4118885_SNP [dm3] 3L_4118885_SNP [dm6]	G	A	1.415e^-4	0.797	INTRON Chd64
3L	4118895	3L_4118895_SNP [dm3] 3L_4118895_SNP [dm6]	G	T	1.415e^-4	0.797	INTRON Chd64
3L	4118897	3L_4118897_SNP [dm3] 3L_4118897_SNP [dm6]	T	C	1.415e^-4	0.797	INTRON Chd64
2L	2696460	2L_2696460_SNP [dm3] 2L_2696460_SNP [dm6]	G	T	1.427e^-4	0.802	UPSTREAM CG15398 INTRON CG31690
3L	16999039	3L_16999039_SNP [dm3] 3L_17005939_SNP [dm6]	C	T	1.441e^-4	0.807	INTRON CG3764
3R	26993037	3R_26993037_SNP [dm3] 3R_31167315_SNP [dm6]	A	G	1.473e^-4	0.809	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
3R	9716654	3R_9716654_DEL [dm3] 3R_13890932_DEL [dm6]	TAATAATATTGTAAGGCACC...	T	1.484e^-4	0.809	INTERGENIC
3R	9716694	3R_9716694_SNP [dm3] 3R_13890972_SNP [dm6]	T	C	1.484e^-4	0.809	INTERGENIC
2R	13211542	2R_13211542_SNP [dm3] 2R_17324037_SNP [dm6]	T	A	1.510e^-4	0.809	INTRON mbl
2R	18123923	2R_18123923_SNP [dm3] 2R_22236418_SNP [dm6]	A	G	1.512e^-4	0.809	EXON CR44755
2R	18123928	2R_18123928_SNP [dm3] 2R_22236423_SNP [dm6]	A	G	1.512e^-4	0.809	EXON CR44755
3L	14054638	3L_14054638_SNP [dm3] 3L_14061538_SNP [dm6]	A	G	1.517e^-4	0.809	INTRON CG32138
2L	8594001	2L_8594001_SNP [dm3] 2L_8594001_SNP [dm6]	A	G	1.519e^-4	0.809	INTRON Sema-1a & 1 other
2R	9409634	2R_9409634_SNP [dm3] 2R_13522129_SNP [dm6]	T	C	1.531e^-4	0.809	INTRON Vmat & 1 other	TF binding site mE1_TFBS_cad
3L	16953424	3L_16953424_SNP [dm3] 3L_16960324_SNP [dm6]	A	T	1.531e^-4	0.809	INTRON Nc73EF
2R	18369189	2R_18369189_SNP [dm3] 2R_22481684_SNP [dm6]	G	A	1.538e^-4	0.809	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5108739	2R_5108739_SNP [dm3] 2R_9221234_SNP [dm6]	C	A	1.538e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15375101	3R_15375101_SNP [dm3] 3R_19549379_SNP [dm6]	G	A	1.546e^-4	0.809	INTRON Dys
3R	15375120	3R_15375120_SNP [dm3] 3R_19549398_SNP [dm6]	A	G	1.546e^-4	0.809	INTRON Dys
2R	3933178	2R_3933178_SNP [dm3] 2R_8045673_SNP [dm6]	A	G	1.547e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	16295481	2L_16295481_SNP [dm3] 2L_16295481_SNP [dm6]	G	T	1.547e^-4	0.809	SYNONYMOUS_CODING Cyp303a1 DOWNSTREAM heix	TF binding site mE1_TFBS_sens
2L	12078821	2L_12078821_SNP [dm3] 2L_12078821_SNP [dm6]	T	C	1.553e^-4	0.809	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3R	5146735	3R_5146735_SNP [dm3] 3R_9321013_SNP [dm6]	C	A	1.553e^-4	0.809	UPSTREAM HP1e INTRON CG8861
2R	3869369	2R_3869369_SNP [dm3] 2R_7981864_SNP [dm6]	G	T	1.562e^-4	0.809	INTRON ACC
2R	10644103	2R_10644103_SNP [dm3] 2R_14756598_SNP [dm6]	A	G	1.570e^-4	0.809	NON_SYNONYMOUS_CODING CG12859 UPSTREAM CG10151 DOWNSTREAM Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7179053	3L_7179053_SNP [dm3] 3L_7185953_SNP [dm6]	T	C	1.574e^-4	0.809	INTRON Dscam2
2L	12339385	2L_12339385_SNP [dm3] 2L_12339385_SNP [dm6]	C	T	1.602e^-4	0.809	SYNONYMOUS_CODING CG31862
3R	26992990	3R_26992990_DEL [dm3] 3R_31167268_DEL [dm6]	CACATACGCAT...	C	1.613e^-4	0.809	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
2R	17116830	2R_17116830_SNP [dm3] 2R_21229325_SNP [dm6]	T	A	1.623e^-4	0.809	INTRON ASPP
3R	16347684	3R_16347684_SNP [dm3] 3R_20521962_SNP [dm6]	T	C	1.639e^-4	0.809	INTERGENIC
3R	16347687	3R_16347687_SNP [dm3] 3R_20521965_SNP [dm6]	A	C	1.639e^-4	0.809	INTERGENIC
3R	16347710	3R_16347710_SNP [dm3] 3R_20521988_SNP [dm6]	C	A	1.639e^-4	0.809	INTERGENIC
3R	16347734	3R_16347734_SNP [dm3] 3R_20522012_SNP [dm6]	G	T	1.639e^-4	0.809	INTERGENIC
3R	26991842	3R_26991842_SNP [dm3] 3R_31166120_SNP [dm6]	G	A	1.640e^-4	0.809	INTRON Gycbeta100B & 1 other
3L	1635813	3L_1635813_INS [dm3] 3L_1635813_INS [dm6]	T	TCGGT	1.649e^-4	0.809	INTRON nSyb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4084380	3L_4084380_SNP [dm3] 3L_4084380_SNP [dm6]	C	A	1.653e^-4	0.809	INTRON Gad1
3L	4367857	3L_4367857_SNP [dm3] 3L_4367857_SNP [dm6]	T	A	1.664e^-4	0.809	UTR_3_PRIME DopEcR UPSTREAM CG11342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4090559	3L_4090559_SNP [dm3] 3L_4090559_SNP [dm6]	A	G	1.668e^-4	0.809	SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9716603	3R_9716603_SNP [dm3] 3R_13890881_SNP [dm6]	A	C	1.668e^-4	0.809	INTERGENIC
3R	9716605	3R_9716605_SNP [dm3] 3R_13890883_SNP [dm6]	T	G	1.668e^-4	0.809	INTERGENIC
3R	9716640	3R_9716640_SNP [dm3] 3R_13890918_SNP [dm6]	A	T	1.668e^-4	0.809	INTERGENIC
2L	17415615	2L_17415615_SNP [dm3] 2L_17415615_SNP [dm6]	T	G	1.671e^-4	0.809	UTR_3_PRIME Dif INTRON Dif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12672137	2R_12672137_DEL [dm3] 2R_16784632_DEL [dm6]	ACTG	A	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672159	2R_12672159_DEL [dm3] 2R_16784654_DEL [dm6]	TATTAACATTAC...	T	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672177	2R_12672177_SNP [dm3] 2R_16784672_SNP [dm6]	C	T	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672180	2R_12672180_SNP [dm3] 2R_16784675_SNP [dm6]	T	C	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672190	2R_12672190_SNP [dm3] 2R_16784685_SNP [dm6]	T	C	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672199	2R_12672199_SNP [dm3] 2R_16784694_SNP [dm6]	C	A	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672200	2R_12672200_SNP [dm3] 2R_16784695_SNP [dm6]	G	A	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672202	2R_12672202_SNP [dm3] 2R_16784697_SNP [dm6]	A	T	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672205	2R_12672205_SNP [dm3] 2R_16784700_SNP [dm6]	A	G	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672207	2R_12672207_SNP [dm3] 2R_16784702_SNP [dm6]	T	G	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672211	2R_12672211_SNP [dm3] 2R_16784706_SNP [dm6]	T	A	1.672e^-4	0.809	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2518722	3L_2518722_MNP [dm3] 3L_2518722_MNP [dm6]	ACG	CTC	1.673e^-4	0.809	DOWNSTREAM CR45170 INTRON Spn
3R	25076129	3R_25076129_DEL [dm3] 3R_29250407_DEL [dm6]	CAC	C	1.682e^-4	0.809	UTR_5_PRIME SP1029	TF binding site BDTNP1_TFBS_twi
2R	19152616	2R_19152616_SNP [dm3] 2R_23265093_SNP [dm6]	C	T	1.682e^-4	0.809	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
X	10228201	X_10228201_SNP [dm3] X_10334168_SNP [dm6]	A	G	1.696e^-4	0.809	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
X	16249555	X_16249555_INS [dm3] X_16355522_INS [dm6]	G	AA	1.698e^-4	0.809	UTR_3_PRIME sl
2R	19309879	2R_19309879_SNP [dm3] 2R_23422356_SNP [dm6]	T	C	1.701e^-4	0.809	INTRON CG9815
3R	10295660	3R_10295660_SNP [dm3] 3R_14469938_SNP [dm6]	C	T	1.705e^-4	0.809	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2241219	X_2241219_SNP [dm3] X_2347186_SNP [dm6]	G	A	1.707e^-4	0.809	SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2241253	X_2241253_SNP [dm3] X_2347220_SNP [dm6]	A	G	1.707e^-4	0.809	SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9014159	2L_9014159_SNP [dm3] 2L_9014159_SNP [dm6]	C	T	1.718e^-4	0.809	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8238722	3L_8238722_SNP [dm3] 3L_8245622_SNP [dm6]	T	C	1.721e^-4	0.809	INTRON Dscam4
2L	7011189	2L_7011189_SNP [dm3] 2L_7011189_SNP [dm6]	G	C	1.728e^-4	0.809	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	5103805	2R_5103805_DEL [dm3] 2R_9216300_DEL [dm6]	TTAACGCACTTTTCCAATTT...	CAATA	1.730e^-4	0.809	INTERGENIC
3R	13615846	3R_13615846_SNP [dm3] 3R_17790124_SNP [dm6]	A	G	1.738e^-4	0.809	INTRON CG43102
2R	10802496	2R_10802496_SNP [dm3] 2R_14914991_SNP [dm6]	A	T	1.739e^-4	0.809	INTRON CG10249
2R	10802519	2R_10802519_SNP [dm3] 2R_14915014_SNP [dm6]	A	G	1.739e^-4	0.809	INTRON CG10249
X	11819069	X_11819069_SNP [dm3] X_11925036_SNP [dm6]	G	C	1.749e^-4	0.809	UPSTREAM Sclp INTERGENIC
2L	12475017	2L_12475017_SNP [dm3] 2L_12475017_SNP [dm6]	A	G	1.756e^-4	0.809	INTRON bun
3R	18501304	3R_18501304_INS [dm3] 3R_22675582_INS [dm6]	G	GT	1.757e^-4	0.809	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9460528	2R_9460528_SNP [dm3] 2R_13573023_SNP [dm6]	G	A	1.759e^-4	0.809	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC	TF binding site mE1_TFBS_sens
2R	13259893	2R_13259893_SNP [dm3] 2R_17372388_SNP [dm6]	C	T	1.768e^-4	0.81	INTRON mbl
2L	14543725	2L_14543725_SNP [dm3] 2L_14543725_SNP [dm6]	A	G	1.770e^-4	0.81	INTERGENIC
3L	4711589	3L_4711589_SNP [dm3] 3L_4711589_SNP [dm6]	C	G	1.835e^-4	0.816	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
2L	5670502	2L_5670502_SNP [dm3] 2L_5670502_SNP [dm6]	T	C	1.838e^-4	0.816	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17150041	2R_17150041_SNP [dm3] 2R_21262536_SNP [dm6]	G	T	1.841e^-4	0.816	INTRON Rgk3
3R	20231942	3R_20231942_SNP [dm3] 3R_24406220_SNP [dm6]	G	A	1.843e^-4	0.816	INTRON nAChRalpha1
2R	12672193	2R_12672193_DEL [dm3] 2R_16784688_DEL [dm6]	CAA	GT	1.865e^-4	0.816	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14249072	3L_14249072_SNP [dm3] 3L_14255972_SNP [dm6]	G	C	1.868e^-4	0.816	INTERGENIC
2R	10122742	2R_10122742_SNP [dm3] 2R_14235237_SNP [dm6]	G	C	1.868e^-4	0.816	DOWNSTREAM CG8485 INTRON Opa1	TF binding site mE1_TFBS_bab1
3L	5222949	3L_5222949_SNP [dm3] 3L_5229849_SNP [dm6]	G	C	1.875e^-4	0.816	INTRON shep
X	5115100	X_5115100_SNP [dm3] X_5221067_SNP [dm6]	A	C	1.891e^-4	0.816	INTRON CG15465 & 1 other
X	5115068	X_5115068_SNP [dm3] X_5221035_SNP [dm6]	G	A	1.895e^-4	0.816	INTRON CG15465 & 1 other
2L	14567108	2L_14567108_DEL [dm3] 2L_14567108_DEL [dm6]	TGGC	ACT	1.898e^-4	0.816	INTERGENIC
2L	14567116	2L_14567116_SNP [dm3] 2L_14567116_SNP [dm6]	G	C	1.898e^-4	0.816	INTERGENIC
2L	11660757	2L_11660757_SNP [dm3] 2L_11660757_SNP [dm6]	T	C	1.898e^-4	0.816	DOWNSTREAM CR44479 EXON CR44497
2R	16700029	2R_16700029_SNP [dm3] 2R_20812524_SNP [dm6]	C	G	1.901e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	7752680	3R_7752680_SNP [dm3] 3R_11926958_SNP [dm6]	G	T	1.901e^-4	0.816	INTRON Cad87A
2L	4468787	2L_4468787_SNP [dm3] 2L_4468787_SNP [dm6]	A	G	1.907e^-4	0.816	SYNONYMOUS_CODING ine DOWNSTREAM CG17840	TF binding site mE1_TFBS_cad
3R	5416941	3R_5416941_SNP [dm3] 3R_9591219_SNP [dm6]	C	T	1.909e^-4	0.816	UPSTREAM CG8312 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	5370948	3R_5370948_SNP [dm3] 3R_9545226_SNP [dm6]	T	C	1.920e^-4	0.816	INTRON mura	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26985831	3R_26985831_SNP [dm3] 3R_31160109_SNP [dm6]	A	G	1.925e^-4	0.816	INTRON Gycbeta100B & 1 other
X	15494208	X_15494208_SNP [dm3] X_15600175_SNP [dm6]	A	C	1.931e^-4	0.816	INTERGENIC
3L	15741933	3L_15741933_SNP [dm3] 3L_15748833_SNP [dm6]	C	T	1.933e^-4	0.816	DOWNSTREAM CR45240 INTERGENIC
X	18213793	X_18213793_SNP [dm3] X_18319760_SNP [dm6]	C	T	1.945e^-4	0.816	INTRON CG6023	transposable element FlyBase
3L	7382966	3L_7382966_SNP [dm3] 3L_7389866_SNP [dm6]	G	C	1.992e^-4	0.816	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7382971	3L_7382971_SNP [dm3] 3L_7389871_SNP [dm6]	A	T	1.992e^-4	0.816	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
2L	19843429	2L_19843429_SNP [dm3] 2L_19843429_SNP [dm6]	G	T	1.992e^-4	0.816	INTRON sick
4	320536	4_320536_SNP [dm3] 4_299910_SNP [dm6]	C	G	2.000e^-4	0.816	INTRON Syt7
2L	3137113	2L_3137113_SNP [dm3] 2L_3137113_SNP [dm6]	C	A	2.008e^-4	0.816	INTRON toc
3L	15598370	3L_15598370_SNP [dm3] 3L_15605270_SNP [dm6]	T	C	2.023e^-4	0.816	SYNONYMOUS_CODING RhoGAP71E UTR_3_PRIME RhoGAP71E INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6531891	X_6531891_SNP [dm3] X_6637858_SNP [dm6]	T	A	2.030e^-4	0.816	DOWNSTREAM CR44817 INTRON pigs
X	13697118	X_13697118_SNP [dm3] X_13803085_SNP [dm6]	T	C	2.040e^-4	0.816	SYNONYMOUS_CODING inaE
2L	9399356	2L_9399356_SNP [dm3] 2L_9399356_SNP [dm6]	A	G	2.047e^-4	0.816	INTRON Shawl
3R	24722124	3R_24722124_SNP [dm3] 3R_28896402_SNP [dm6]	C	G	2.047e^-4	0.816	INTRON Doa
X	5767956	X_5767956_SNP [dm3] X_5873923_SNP [dm6]	A	C	2.052e^-4	0.816	UTR_3_PRIME mof UPSTREAM GAA1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15375107	3R_15375107_DEL [dm3] 3R_19549385_DEL [dm6]	GGAAAAACAGT...	G	2.062e^-4	0.816	INTRON Dys
2R	5586262	2R_5586262_SNP [dm3] 2R_9698757_SNP [dm6]	G	A	2.066e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10297384	3R_10297384_SNP [dm3] 3R_14471662_SNP [dm6]	C	G	2.067e^-4	0.816	INTRON cv-c
3R	16493803	3R_16493803_SNP [dm3] 3R_20668081_SNP [dm6]	C	T	2.067e^-4	0.816	INTERGENIC
3L	18214875	3L_18214875_SNP [dm3] 3L_18221775_SNP [dm6]	T	A	2.077e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3446425	3L_3446425_SNP [dm3] 3L_3446425_SNP [dm6]	G	A	2.078e^-4	0.816	INTRON eIF5B
2L	12335263	2L_12335263_DEL [dm3] 2L_12335263_DEL [dm6]	TAATCCGCCCTTCCT...	T	2.084e^-4	0.816	INTERGENIC
2L	12338333	2L_12338333_SNP [dm3] 2L_12338333_SNP [dm6]	G	C	2.090e^-4	0.816	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12349629	2L_12349629_SNP [dm3] 2L_12349629_SNP [dm6]	G	A	2.090e^-4	0.816	INTRON bru-2
3L	4090153	3L_4090153_SNP [dm3] 3L_4090153_SNP [dm6]	A	T	2.100e^-4	0.816	INTRON CG14989
X	16871662	X_16871662_SNP [dm3] X_16977629_SNP [dm6]	T	C	2.106e^-4	0.816	INTRON CG45002
2R	13212779	2R_13212779_SNP [dm3] 2R_17325274_SNP [dm6]	G	A	2.121e^-4	0.816	INTRON mbl
X	18945107	X_18945107_SNP [dm3] X_19051074_SNP [dm6]	A	T	2.124e^-4	0.816	UTR_3_PRIME Diedel3 DOWNSTREAM Diedel3
3L	15581950	3L_15581950_DEL [dm3] 3L_15588850_DEL [dm6]	CGCTGAGC	C	2.124e^-4	0.816	UPSTREAM RhoGAP71E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5361653	3L_5361653_SNP [dm3] 3L_5368553_SNP [dm6]	G	A	2.125e^-4	0.816	UPSTREAM CG10635 & 1 other INTERGENIC
2L	2941263	2L_2941263_SNP [dm3] 2L_2941263_SNP [dm6]	G	T	2.130e^-4	0.816	INTRON lilli
2L	2941264	2L_2941264_SNP [dm3] 2L_2941264_SNP [dm6]	G	T	2.130e^-4	0.816	INTRON lilli
3R	24722057	3R_24722057_SNP [dm3] 3R_28896335_SNP [dm6]	C	T	2.130e^-4	0.816	INTRON Doa
3R	24722067	3R_24722067_SNP [dm3] 3R_28896345_SNP [dm6]	G	A	2.130e^-4	0.816	INTRON Doa
X	6531661	X_6531661_SNP [dm3] X_6637628_SNP [dm6]	G	A	2.130e^-4	0.816	DOWNSTREAM CR44817 INTRON pigs
X	6532115	X_6532115_DEL [dm3] X_6638082_DEL [dm6]	ATCCACCC	A	2.130e^-4	0.816	DOWNSTREAM CR44817 INTRON pigs
X	2940906	X_2940906_DEL [dm3] X_3046873_DEL [dm6]	AGTAA	A	2.147e^-4	0.816	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4118868	3L_4118868_SNP [dm3] 3L_4118868_SNP [dm6]	T	C	2.154e^-4	0.816	INTRON Chd64
X	11613341	X_11613341_SNP [dm3] X_11719308_SNP [dm6]	T	C	2.154e^-4	0.816	SYNONYMOUS_CODING prtp UPSTREAM Tango10	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9972040	2L_9972040_SNP [dm3] 2L_9972040_SNP [dm6]	A	C	2.157e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	2.163e^-4	0.816	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4276934	2L_4276934_SNP [dm3] 2L_4276934_SNP [dm6]	C	T	2.164e^-4	0.816	DOWNSTREAM Art2 INTERGENIC
X	12044650	X_12044650_SNP [dm3] X_12150617_SNP [dm6]	T	A	2.170e^-4	0.816	INTRON Ten-a
2L	14177837	2L_14177837_SNP [dm3] 2L_14177837_SNP [dm6]	C	A	2.173e^-4	0.816	INTRON CG43333
2R	17528278	2R_17528278_SNP [dm3] 2R_21640773_SNP [dm6]	A	T	2.178e^-4	0.816	INTERGENIC
2L	11767900	2L_11767900_SNP [dm3] 2L_11767900_SNP [dm6]	C	T	2.191e^-4	0.816	INTERGENIC
2L	9384403	2L_9384403_SNP [dm3] 2L_9384403_SNP [dm6]	C	G	2.191e^-4	0.816	INTRON Shawl
2L	9396821	2L_9396821_DEL [dm3] 2L_9396821_DEL [dm6]	TTACG	AA	2.191e^-4	0.816	DOWNSTREAM CG4438 INTRON Shawl
2L	9399117	2L_9399117_SNP [dm3] 2L_9399117_SNP [dm6]	C	T	2.191e^-4	0.816	INTRON Shawl
2L	9399253	2L_9399253_SNP [dm3] 2L_9399253_SNP [dm6]	A	G	2.191e^-4	0.816	INTRON Shawl
2L	9399578	2L_9399578_DEL [dm3] 2L_9399578_DEL [dm6]	CT	C	2.191e^-4	0.816	INTRON Shawl
2L	9401038	2L_9401038_SNP [dm3] 2L_9401038_SNP [dm6]	A	C	2.191e^-4	0.816	INTRON Shawl
2L	9404007	2L_9404007_SNP [dm3] 2L_9404007_SNP [dm6]	C	T	2.191e^-4	0.816	INTRON Shawl
2R	11706874	2R_11706874_SNP [dm3] 2R_15819369_SNP [dm6]	G	A	2.191e^-4	0.816	SYNONYMOUS_CODING CG33465 INTRON tun
2R	15044716	2R_15044716_SNP [dm3] 2R_19157211_SNP [dm6]	C	G	2.191e^-4	0.816	INTRON ena
2R	8469967	2R_8469967_SNP [dm3] 2R_12582462_SNP [dm6]	C	G	2.191e^-4	0.816	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad
2R	8470261	2R_8470261_SNP [dm3] 2R_12582756_SNP [dm6]	G	A	2.191e^-4	0.816	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4087219	3L_4087219_SNP [dm3] 3L_4087219_SNP [dm6]	C	T	2.191e^-4	0.816	UPSTREAM CG14989 INTRON Gad1
3L	4087840	3L_4087840_INS [dm3] 3L_4087840_INS [dm6]	A	AT	2.191e^-4	0.816	INTRON Gad1 & 1 other
3L	4087863	3L_4087863_INS [dm3] 3L_4087863_INS [dm6]	T	TT	2.191e^-4	0.816	INTRON Gad1 & 1 other
3L	4089047	3L_4089047_SNP [dm3] 3L_4089047_SNP [dm6]	C	G	2.191e^-4	0.816	SYNONYMOUS_CODING CG14989 UPSTREAM CG14989 & 1 other
3L	4089679	3L_4089679_SNP [dm3] 3L_4089679_SNP [dm6]	C	G	2.191e^-4	0.816	UPSTREAM Gad1 INTRON CG14989
3L	5222034	3L_5222034_SNP [dm3] 3L_5228934_SNP [dm6]	C	A	2.191e^-4	0.816	INTRON shep
3L	7773564	3L_7773564_SNP [dm3] 3L_7780464_SNP [dm6]	G	A	2.191e^-4	0.816	INTRON CG32369	TF binding site mE1_TFBS_cad
3R	26981464	3R_26981464_SNP [dm3] 3R_31155742_SNP [dm6]	A	T	2.191e^-4	0.816	INTRON Gycbeta100B
X	13475138	X_13475138_SNP [dm3] X_13581105_SNP [dm6]	G	T	2.191e^-4	0.816	INTRON Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
X	20404850	X_20404850_SNP [dm3] X_20533823_SNP [dm6]	T	A	2.191e^-4	0.816	INTERGENIC
X	4664214	X_4664214_SNP [dm3] X_4770181_SNP [dm6]	G	T	2.191e^-4	0.816	UPSTREAM CG15472 DOWNSTREAM Bteb2 INTERGENIC
X	4664215	X_4664215_SNP [dm3] X_4770182_SNP [dm6]	T	G	2.191e^-4	0.816	UPSTREAM CG15472 DOWNSTREAM Bteb2 INTERGENIC
X	7730708	X_7730708_SNP [dm3] X_7836675_SNP [dm6]	C	T	2.191e^-4	0.816	INTRON CG1402
2L	14368089	2L_14368089_SNP [dm3] 2L_14368089_SNP [dm6]	T	G	2.196e^-4	0.816	INTERGENIC
2R	10116097	2R_10116097_SNP [dm3] 2R_14228592_SNP [dm6]	C	A	2.210e^-4	0.819	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5028716	2L_5028716_SNP [dm3] 2L_5028716_SNP [dm6]	A	G	2.234e^-4	0.82	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	12328299	X_12328299_DEL [dm3] X_12434266_DEL [dm6]	TTA	T	2.234e^-4	0.82	INTRON Pkcdelta
3R	25288194	3R_25288194_SNP [dm3] 3R_29462472_SNP [dm6]	C	T	2.235e^-4	0.82	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12475083	2L_12475083_SNP [dm3] 2L_12475083_SNP [dm6]	C	T	2.237e^-4	0.82	INTRON bun
2R	17029287	2R_17029287_SNP [dm3] 2R_21141782_SNP [dm6]	C	T	2.240e^-4	0.82	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	7212412	3L_7212412_SNP [dm3] 3L_7219312_SNP [dm6]	C	G	2.241e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25153539	3R_25153539_SNP [dm3] 3R_29327817_SNP [dm6]	G	T	2.246e^-4	0.821	INTERGENIC
3R	18462375	3R_18462375_SNP [dm3] 3R_22636653_SNP [dm6]	C	T	2.254e^-4	0.822	UPSTREAM loco INTRON loco	TF binding site mE1_TFBS_cad
3L	2656350	3L_2656350_SNP [dm3] 3L_2656350_SNP [dm6]	T	A	2.259e^-4	0.822	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2R	7956227	2R_7956227_SNP [dm3] 2R_12068722_SNP [dm6]	A	T	2.280e^-4	0.827	INTRON CG8888
X	19765454	X_19765454_SNP [dm3] X_19871421_SNP [dm6]	C	T	2.282e^-4	0.827	SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	22051130	X_22051130_SNP [dm3] X_22649294_SNP [dm6]	G	T	2.294e^-4	0.827	INTERGENIC
2L	12515025	2L_12515025_SNP [dm3] 2L_12515025_SNP [dm6]	C	T	2.300e^-4	0.827	INTRON bun
2L	6547514	2L_6547514_SNP [dm3] 2L_6547514_SNP [dm6]	T	G	2.301e^-4	0.827	UPSTREAM eya INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24313722	3R_24313722_SNP [dm3] 3R_28488000_SNP [dm6]	G	A	2.302e^-4	0.827	NON_SYNONYMOUS_CODING Dhc98D
X	16522091	X_16522091_SNP [dm3] X_16628058_SNP [dm6]	C	T	2.320e^-4	0.827	NON_SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
2L	19881208	2L_19881208_SNP [dm3] 2L_19881208_SNP [dm6]	G	A	2.320e^-4	0.827	INTRON sick
2R	12075875	2R_12075875_SNP [dm3] 2R_16188370_SNP [dm6]	C	T	2.327e^-4	0.827	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25260027	3R_25260027_SNP [dm3] 3R_29434305_SNP [dm6]	A	G	2.330e^-4	0.827	INTRON Ptp99A
X	18803745	X_18803745_INS [dm3] X_18909712_INS [dm6]	A	ACATA	2.339e^-4	0.827	UTR_3_PRIME CG7378 DOWNSTREAM CG7378	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4400080	2R_4400080_SNP [dm3] 2R_8512575_SNP [dm6]	A	G	2.342e^-4	0.827	INTRON mtt
X	12685183	X_12685183_SNP [dm3] X_12791150_SNP [dm6]	A	T	2.355e^-4	0.827	UTR_3_PRIME Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12544337	2R_12544337_SNP [dm3] 2R_16656832_SNP [dm6]	A	C	2.361e^-4	0.827	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
3R	24314454	3R_24314454_SNP [dm3] 3R_28488732_SNP [dm6]	C	T	2.363e^-4	0.827	INTRON Dhc98D
2L	11947453	2L_11947453_SNP [dm3] 2L_11947453_SNP [dm6]	T	C	2.374e^-4	0.827	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2L	15126722	2L_15126722_SNP [dm3] 2L_15126722_SNP [dm6]	C	G	2.380e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2918407	2R_2918407_SNP [dm3] 2R_7030902_SNP [dm6]	G	A	2.407e^-4	0.827	INTRON Tsp42Eg
2R	2918445	2R_2918445_SNP [dm3] 2R_7030940_SNP [dm6]	T	A	2.407e^-4	0.827	INTRON Tsp42Eg
2R	2918459	2R_2918459_SNP [dm3] 2R_7030954_SNP [dm6]	A	C	2.407e^-4	0.827	INTRON Tsp42Eg
2L	7742550	2L_7742550_SNP [dm3] 2L_7742550_SNP [dm6]	T	C	2.427e^-4	0.827	INTERGENIC
2L	7742558	2L_7742558_SNP [dm3] 2L_7742558_SNP [dm6]	A	T	2.427e^-4	0.827	INTERGENIC
2R	7956219	2R_7956219_SNP [dm3] 2R_12068714_SNP [dm6]	T	C	2.441e^-4	0.827	INTRON CG8888
3L	2518745	3L_2518745_SNP [dm3] 3L_2518745_SNP [dm6]	A	T	2.455e^-4	0.827	DOWNSTREAM CR45170 INTRON Spn
3L	2518755	3L_2518755_SNP [dm3] 3L_2518755_SNP [dm6]	A	T	2.455e^-4	0.827	DOWNSTREAM CR45170 INTRON Spn
2R	16112541	2R_16112541_SNP [dm3] 2R_20225036_SNP [dm6]	G	A	2.456e^-4	0.827	INTERGENIC
2L	18336186	2L_18336186_DEL [dm3] 2L_18336186_DEL [dm6]	CCACAAAA	GT	2.457e^-4	0.827	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14567077	2L_14567077_SNP [dm3] 2L_14567077_SNP [dm6]	A	G	2.464e^-4	0.827	INTERGENIC
2L	14567182	2L_14567182_SNP [dm3] 2L_14567182_SNP [dm6]	C	T	2.464e^-4	0.827	INTERGENIC
2L	14567255	2L_14567255_SNP [dm3] 2L_14567255_SNP [dm6]	C	T	2.464e^-4	0.827	INTERGENIC
2L	20142779	2L_20142779_INS [dm3] 2L_20142779_INS [dm6]	A	ACATA	2.470e^-4	0.827	INTERGENIC
2L	11185205	2L_11185205_SNP [dm3] 2L_11185205_SNP [dm6]	C	T	2.486e^-4	0.827	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	12514573	2L_12514573_SNP [dm3] 2L_12514573_SNP [dm6]	C	G	2.486e^-4	0.827	INTRON bun
2L	14781320	2L_14781320_SNP [dm3] 2L_14781320_SNP [dm6]	A	G	2.486e^-4	0.827	DOWNSTREAM CR15280 INTERGENIC
2L	14781344	2L_14781344_SNP [dm3] 2L_14781344_SNP [dm6]	T	A	2.486e^-4	0.827	DOWNSTREAM CR15280 INTERGENIC
2L	4775475	2L_4775475_SNP [dm3] 2L_4775475_SNP [dm6]	G	C	2.486e^-4	0.827	INTRON CG15630
2L	5027849	2L_5027849_SNP [dm3] 2L_5027849_SNP [dm6]	T	A	2.486e^-4	0.827	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	6771409	2L_6771409_SNP [dm3] 2L_6771409_SNP [dm6]	T	A	2.486e^-4	0.827	UPSTREAM CG11321 INTRON CG11321
2L	6771422	2L_6771422_SNP [dm3] 2L_6771422_SNP [dm6]	T	C	2.486e^-4	0.827	UPSTREAM CG11321 INTRON CG11321
2L	7444247	2L_7444247_SNP [dm3] 2L_7444247_SNP [dm6]	G	T	2.486e^-4	0.827	INTRON CG5973
2L	7444373	2L_7444373_SNP [dm3] 2L_7444373_SNP [dm6]	C	T	2.486e^-4	0.827	SYNONYMOUS_CODING CG5973 DOWNSTREAM santa-maria
2L	9347852	2L_9347852_SNP [dm3] 2L_9347852_SNP [dm6]	G	A	2.486e^-4	0.827	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9598331	2L_9598331_SNP [dm3] 2L_9598331_SNP [dm6]	A	C	2.486e^-4	0.827	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18740246	2R_18740246_SNP [dm3] 2R_22852723_SNP [dm6]	G	C	2.486e^-4	0.827	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18214183	X_18214183_SNP [dm3] X_18320150_SNP [dm6]	G	C	2.486e^-4	0.827	INTRON CG6023
X	10228661	X_10228661_SNP [dm3] X_10334628_SNP [dm6]	C	G	2.494e^-4	0.827	INTRON CG43740	TF binding site mE1_TFBS_HSA
2L	495039	2L_495039_SNP [dm3] 2L_495039_SNP [dm6]	C	T	2.494e^-4	0.827	INTRON ush
X	10537371	X_10537371_SNP [dm3] X_10643338_SNP [dm6]	C	G	2.499e^-4	0.827	INTRON X11Lbeta
3L	18147605	3L_18147605_DEL [dm3] 3L_18154505_DEL [dm6]	CATTCC	C	2.516e^-4	0.831	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10984831	3L_10984831_INS [dm3] 3L_10991731_INS [dm6]	G	GG	2.522e^-4	0.832	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	18150444	2R_18150444_SNP [dm3] 2R_22262939_SNP [dm6]	G	A	2.528e^-4	0.832	NON_SYNONYMOUS_CODING dve	TF binding site mE1_TFBS_chinmo
2R	9169077	2R_9169077_SNP [dm3] 2R_13281572_SNP [dm6]	G	A	2.539e^-4	0.833	INTRON Dh31-R
3L	6715306	3L_6715306_SNP [dm3] 3L_6722206_SNP [dm6]	C	A	2.540e^-4	0.833	INTERGENIC
3R	9328443	3R_9328443_DEL [dm3] 3R_13502721_DEL [dm6]	AA	A	2.546e^-4	0.833	INTERGENIC
2L	12349798	2L_12349798_SNP [dm3] 2L_12349798_SNP [dm6]	A	T	2.553e^-4	0.834	INTRON bru-2
2L	13682790	2L_13682790_SNP [dm3] 2L_13682790_SNP [dm6]	G	A	2.560e^-4	0.835	INTRON CG31814
X	10968808	X_10968808_SNP [dm3] X_11074775_SNP [dm6]	G	A	2.574e^-4	0.835	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4450022	2L_4450022_SNP [dm3] 2L_4450022_SNP [dm6]	A	G	2.581e^-4	0.835	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
3L	6249973	3L_6249973_SNP [dm3] 3L_6256873_SNP [dm6]	T	C	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6249983	3L_6249983_SNP [dm3] 3L_6256883_SNP [dm6]	T	C	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6249992	3L_6249992_DEL [dm3] 3L_6256892_DEL [dm6]	TTTTTCAT	T	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250032	3L_6250032_SNP [dm3] 3L_6256932_SNP [dm6]	A	G	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6250071	3L_6250071_SNP [dm3] 3L_6256971_SNP [dm6]	T	C	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250079	3L_6250079_SNP [dm3] 3L_6256979_SNP [dm6]	G	A	2.597e^-4	0.835	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19010328	2L_19010328_SNP [dm3] 2L_19010328_SNP [dm6]	T	C	2.615e^-4	0.839	UPSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	829093	3L_829093_SNP [dm3] 3L_829093_SNP [dm6]	G	A	2.621e^-4	0.839	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me5.8S-G74 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2394311	2L_2394311_SNP [dm3] 2L_2394311_SNP [dm6]	C	G	2.626e^-4	0.839	INTRON VGlut
3R	15262232	3R_15262232_SNP [dm3] 3R_19436510_SNP [dm6]	C	T	2.631e^-4	0.839	INTRON CG31221
3R	26931298	3R_26931298_SNP [dm3] 3R_31105576_SNP [dm6]	T	A	2.641e^-4	0.84	DOWNSTREAM CG11318 INTERGENIC
3R	2752141	3R_2752141_DEL [dm3] 3R_6926419_DEL [dm6]	GG	G	2.642e^-4	0.84	INTRON Antp
X	6450167	X_6450167_SNP [dm3] X_6556134_SNP [dm6]	A	C	2.649e^-4	0.84	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	17452004	3R_17452004_SNP [dm3] 3R_21626282_SNP [dm6]	C	T	2.667e^-4	0.845	SYNONYMOUS_CODING E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26567232	3R_26567232_SNP [dm3] 3R_30741510_SNP [dm6]	C	A	2.685e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	2.719e^-4	0.855	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	2.719e^-4	0.855	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12078825	2L_12078825_SNP [dm3] 2L_12078825_SNP [dm6]	C	T	2.720e^-4	0.855	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3R	4615679	3R_4615679_SNP [dm3] 3R_8789957_SNP [dm6]	C	T	2.746e^-4	0.858	INTRON Pif1B & 1 other
3R	4361484	3R_4361484_SNP [dm3] 3R_8535762_SNP [dm6]	G	A	2.748e^-4	0.858	INTERGENIC
X	8149416	X_8149416_SNP [dm3] X_8255383_SNP [dm6]	C	T	2.748e^-4	0.858	INTRON CG1632
2R	9932302	2R_9932302_SNP [dm3] 2R_14044797_SNP [dm6]	A	G	2.754e^-4	0.858	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15604377	3L_15604377_SNP [dm3] 3L_15611277_SNP [dm6]	A	T	2.760e^-4	0.858	NON_SYNONYMOUS_CODING CG13449 UPSTREAM CG7650
3R	10409073	3R_10409073_SNP [dm3] 3R_14583351_SNP [dm6]	T	C	2.762e^-4	0.858	INTRON stumps
3L	17921656	3L_17921656_SNP [dm3] 3L_17928556_SNP [dm6]	C	T	2.762e^-4	0.858	INTERGENIC
3L	4387229	3L_4387229_SNP [dm3] 3L_4387229_SNP [dm6]	T	C	2.770e^-4	0.859	INTRON slow
2L	5243998	2L_5243998_SNP [dm3] 2L_5243998_SNP [dm6]	T	C	2.783e^-4	0.86	SYNONYMOUS_CODING tkv INTRON tkv EXON CR14033
2L	15554067	2L_15554067_SNP [dm3] 2L_15554067_SNP [dm6]	C	T	2.784e^-4	0.86	INTRON kek3
3L	3447754	3L_3447754_SNP [dm3] 3L_3447754_SNP [dm6]	C	T	2.795e^-4	0.862	INTRON eIF5B
X	11137607	X_11137607_SNP [dm3] X_11243574_SNP [dm6]	G	T	2.820e^-4	0.866	INTRON CG44422
2R	19358616	2R_19358616_SNP [dm3] 2R_23471093_SNP [dm6]	G	A	2.822e^-4	0.866	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	6808727	2R_6808727_SNP [dm3] 2R_10921222_SNP [dm6]	A	G	2.824e^-4	0.866	INTERGENIC
2L	10073481	2L_10073481_SNP [dm3] 2L_10073481_SNP [dm6]	G	A	2.827e^-4	0.866	INTRON CG44153
4	337447	4_337447_SNP [dm3] 4_316821_SNP [dm6]	C	A	2.867e^-4	0.869	INTRON CG32850
X	3071124	X_3071124_SNP [dm3] X_3177091_SNP [dm6]	A	G	2.869e^-4	0.869	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	3765759	X_3765759_SNP [dm3] X_3871726_SNP [dm6]	A	C	2.871e^-4	0.869	UPSTREAM CG2930 INTRON yin & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	1254283	2L_1254283_SNP [dm3] 2L_1254283_SNP [dm6]	T	G	2.874e^-4	0.869	INTERGENIC
2L	17313919	2L_17313919_SNP [dm3] 2L_17313919_SNP [dm6]	G	C	2.888e^-4	0.869	INTERGENIC
2R	15385890	2R_15385890_SNP [dm3] 2R_19498385_SNP [dm6]	C	T	2.888e^-4	0.869	INTRON CG15120	TF binding site mE1_TFBS_cad
X	3735025	X_3735025_SNP [dm3] X_3840992_SNP [dm6]	C	T	2.908e^-4	0.869	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	15505215	3L_15505215_SNP [dm3] 3L_15512115_SNP [dm6]	C	A	2.914e^-4	0.869	INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4447615	2L_4447615_SNP [dm3] 2L_4447615_SNP [dm6]	C	A	2.927e^-4	0.869	SYNONYMOUS_CODING MFS18 DOWNSTREAM Elp3	TF binding site mE1_TFBS_sens
X	6531844	X_6531844_SNP [dm3] X_6637811_SNP [dm6]	C	A	2.934e^-4	0.869	DOWNSTREAM CR44817 INTRON pigs
2L	8642393	2L_8642393_SNP [dm3] 2L_8642393_SNP [dm6]	T	G	2.954e^-4	0.869	INTRON Sema-1a
3L	6249905	3L_6249905_SNP [dm3] 3L_6256805_SNP [dm6]	A	G	2.974e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17290183	3L_17290183_SNP [dm3] 3L_17297083_SNP [dm6]	A	G	2.977e^-4	0.869	INTERGENIC
2L	14480426	2L_14480426_SNP [dm3] 2L_14480426_SNP [dm6]	A	G	2.990e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	6505493	3R_6505493_SNP [dm3] 3R_10679771_SNP [dm6]	G	A	2.993e^-4	0.869	INTRON CG14688	TF binding site BDTNP1_TFBS_twi
3L	4082801	3L_4082801_SNP [dm3] 3L_4082801_SNP [dm6]	G	T	2.996e^-4	0.869	INTRON Gad1
2R	14832936	2R_14832936_SNP [dm3] 2R_18945431_SNP [dm6]	T	G	2.999e^-4	0.869	INTRON sano	TF binding site mE1_TFBS_cad
X	12292295	X_12292295_SNP [dm3] X_12398262_SNP [dm6]	C	G	3.004e^-4	0.869	INTERGENIC
2R	18052679	2R_18052679_SNP [dm3] 2R_22165174_SNP [dm6]	G	A	3.018e^-4	0.869	UPSTREAM CG34206 INTRON a
3L	15607052	3L_15607052_SNP [dm3] 3L_15613952_SNP [dm6]	G	C	3.018e^-4	0.869	SYNONYMOUS_CODING comm3
X	11613321	X_11613321_SNP [dm3] X_11719288_SNP [dm6]	G	T	3.028e^-4	0.869	NON_SYNONYMOUS_CODING prtp UPSTREAM Tango10	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7462995	2L_7462995_SNP [dm3] 2L_7462995_SNP [dm6]	G	T	3.031e^-4	0.869	UPSTREAM Gr28b INTERGENIC
2L	9398532	2L_9398532_SNP [dm3] 2L_9398532_SNP [dm6]	C	T	3.033e^-4	0.869	UPSTREAM CG4438 INTRON Shawl
X	6104858	X_6104858_SNP [dm3] X_6210825_SNP [dm6]	T	G	3.035e^-4	0.869	INTERGENIC
3R	19507352	3R_19507352_SNP [dm3] 3R_23681630_SNP [dm6]	A	C	3.036e^-4	0.869	SYNONYMOUS_CODING eIF-3p66 UPSTREAM CG16710	TF binding site mE1_TFBS_cad
3R	18602474	3R_18602474_SNP [dm3] 3R_22776752_SNP [dm6]	T	C	3.043e^-4	0.869	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029	TF binding site mE1_TFBS_cad
3L	4082960	3L_4082960_SNP [dm3] 3L_4082960_SNP [dm6]	T	C	3.048e^-4	0.869	INTRON Gad1
2R	15482319	2R_15482319_SNP [dm3] 2R_19594814_SNP [dm6]	A	G	3.048e^-4	0.869	INTRON sm & 1 other
3R	13618906	3R_13618906_DEL [dm3] 3R_17793184_DEL [dm6]	ACA	A	3.052e^-4	0.869	INTRON CG43102
2R	15976140	2R_15976140_SNP [dm3] 2R_20088635_SNP [dm6]	A	C	3.064e^-4	0.869	INTERGENIC
3R	25075252	3R_25075252_SNP [dm3] 3R_29249530_SNP [dm6]	G	A	3.077e^-4	0.869	UPSTREAM SP1029 INTRON SP1029
2L	18051372	2L_18051372_SNP [dm3] 2L_18051372_SNP [dm6]	T	C	3.079e^-4	0.869	INTRON rdo
2L	13434546	2L_13434546_SNP [dm3] 2L_13434546_SNP [dm6]	T	C	3.092e^-4	0.869	INTRON CG42784	TF binding site mE1_TFBS_cad
2R	19338197	2R_19338197_SNP [dm3] 2R_23450674_SNP [dm6]	C	T	3.111e^-4	0.869	INTRON CG43795
2R	19338205	2R_19338205_SNP [dm3] 2R_23450682_SNP [dm6]	T	A	3.111e^-4	0.869	INTRON CG43795
X	16786983	X_16786983_SNP [dm3] X_16892950_SNP [dm6]	T	A	3.115e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_kn
X	16786990	X_16786990_SNP [dm3] X_16892957_SNP [dm6]	G	T	3.115e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_kn
2L	19092444	2L_19092444_SNP [dm3] 2L_19092444_SNP [dm6]	T	G	3.117e^-4	0.869	INTRON Lim3
3L	15589532	3L_15589532_SNP [dm3] 3L_15596432_SNP [dm6]	C	T	3.133e^-4	0.869	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4119382	3L_4119382_SNP [dm3] 3L_4119382_SNP [dm6]	G	A	3.137e^-4	0.869	INTRON Chd64
2L	21101842	2L_21101842_SNP [dm3] 2L_21101842_SNP [dm6]	A	G	3.139e^-4	0.869	SYNONYMOUS_CODING CG12050 UPSTREAM CG9257 DOWNSTREAM CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11185156	2L_11185156_SNP [dm3] 2L_11185156_SNP [dm6]	A	G	3.149e^-4	0.869	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	16115203	2R_16115203_SNP [dm3] 2R_20227698_SNP [dm6]	T	A	3.149e^-4	0.869	INTERGENIC
4	159071	4_159071_SNP [dm3] 4_138445_SNP [dm6]	T	A	3.158e^-4	0.869	SYNONYMOUS_CODING CG32000
4	292193	4_292193_SNP [dm3] 4_271567_SNP [dm6]	C	T	3.158e^-4	0.869	SYNONYMOUS_CODING NfI	TF binding site mE1_TFBS_sens
3R	16738847	3R_16738847_SNP [dm3] 3R_20913125_SNP [dm6]	G	T	3.181e^-4	0.869	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
2R	18115002	2R_18115002_SNP [dm3] 2R_22227497_SNP [dm6]	G	C	3.188e^-4	0.869	UPSTREAM Oatp58Dc INTRON Oatp58Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16452986	3R_16452986_SNP [dm3] 3R_20627264_SNP [dm6]	A	G	3.206e^-4	0.869	UTR_3_PRIME H DOWNSTREAM H
X	16156244	X_16156244_INS [dm3] X_16262211_INS [dm6]	A	ATTTATA	3.220e^-4	0.869	INTERGENIC
2R	10116874	2R_10116874_SNP [dm3] 2R_14229369_SNP [dm6]	G	A	3.221e^-4	0.869	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10116889	2R_10116889_SNP [dm3] 2R_14229384_SNP [dm6]	A	T	3.221e^-4	0.869	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4711592	3L_4711592_SNP [dm3] 3L_4711592_SNP [dm6]	A	G	3.223e^-4	0.869	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
3R	16703584	3R_16703584_SNP [dm3] 3R_20877862_SNP [dm6]	C	T	3.237e^-4	0.869	SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
X	5536216	X_5536216_SNP [dm3] X_5642183_SNP [dm6]	C	G	3.248e^-4	0.869	INTRON CG42492
3R	24042555	3R_24042555_SNP [dm3] 3R_28216833_SNP [dm6]	T	A	3.249e^-4	0.869	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
2R	15321103	2R_15321103_SNP [dm3] 2R_19433598_SNP [dm6]	G	A	3.253e^-4	0.869	SYNONYMOUS_CODING Fak	TF binding site mE1_TFBS_inv
2L	17782115	2L_17782115_SNP [dm3] 2L_17782115_SNP [dm6]	C	A	3.261e^-4	0.869	INTERGENIC
2L	11204833	2L_11204833_SNP [dm3] 2L_11204833_SNP [dm6]	C	T	3.273e^-4	0.869	DOWNSTREAM CR43859 INTERGENIC
2L	11204846	2L_11204846_SNP [dm3] 2L_11204846_SNP [dm6]	T	C	3.273e^-4	0.869	DOWNSTREAM CR43859 INTERGENIC
2L	12056094	2L_12056094_SNP [dm3] 2L_12056094_SNP [dm6]	G	A	3.273e^-4	0.869	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	7742540	2L_7742540_SNP [dm3] 2L_7742540_SNP [dm6]	G	A	3.273e^-4	0.869	INTERGENIC
2L	9678731	2L_9678731_SNP [dm3] 2L_9678731_SNP [dm6]	A	T	3.273e^-4	0.869	INTERGENIC
2R	10800768	2R_10800768_DEL [dm3] 2R_14913263_DEL [dm6]	ATA	A	3.273e^-4	0.869	INTRON CG10249
2R	10800823	2R_10800823_SNP [dm3] 2R_14913318_SNP [dm6]	G	A	3.273e^-4	0.869	INTRON CG10249
2R	12969664	2R_12969664_SNP [dm3] 2R_17082159_SNP [dm6]	C	A	3.273e^-4	0.869	INTRON CG30460
2R	19198549	2R_19198549_SNP [dm3] 2R_23311026_SNP [dm6]	A	G	3.273e^-4	0.869	INTERGENIC
2R	8632057	2R_8632057_SNP [dm3] 2R_12744552_SNP [dm6]	G	C	3.273e^-4	0.869	INTRON CG42663	TF binding site mE1_TFBS_chinmo
3L	10889218	3L_10889218_SNP [dm3] 3L_10896118_SNP [dm6]	C	G	3.273e^-4	0.869	UTR_3_PRIME Aps
3L	20004190	3L_20004190_SNP [dm3] 3L_20011090_SNP [dm6]	C	T	3.273e^-4	0.869	SYNONYMOUS_CODING kug	TF binding site mE1_TFBS_sens
3L	7630178	3L_7630178_SNP [dm3] 3L_7637078_SNP [dm6]	A	C	3.273e^-4	0.869	SYNONYMOUS_CODING CG33275
3R	13615822	3R_13615822_SNP [dm3] 3R_17790100_SNP [dm6]	T	C	3.273e^-4	0.869	INTRON CG43102
3R	13615943	3R_13615943_SNP [dm3] 3R_17790221_SNP [dm6]	A	T	3.273e^-4	0.869	INTRON CG43102
3R	25246380	3R_25246380_SNP [dm3] 3R_29420658_SNP [dm6]	T	A	3.273e^-4	0.869	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25246383	3R_25246383_SNP [dm3] 3R_29420661_SNP [dm6]	T	A	3.273e^-4	0.869	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13475196	X_13475196_SNP [dm3] X_13581163_SNP [dm6]	G	T	3.273e^-4	0.869	INTRON Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
X	14519319	X_14519319_SNP [dm3] X_14625286_SNP [dm6]	A	C	3.273e^-4	0.869	INTRON NetA
X	14519322	X_14519322_SNP [dm3] X_14625289_SNP [dm6]	C	T	3.273e^-4	0.869	INTRON NetA
X	17676907	X_17676907_SNP [dm3] X_17782874_SNP [dm6]	G	A	3.273e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3261775	X_3261775_SNP [dm3] X_3367742_SNP [dm6]	A	G	3.273e^-4	0.869	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3049898	X_3049898_SNP [dm3] X_3155865_SNP [dm6]	G	A	3.275e^-4	0.869	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20828685	2L_20828685_SNP [dm3] 2L_20828685_SNP [dm6]	C	T	3.287e^-4	0.869	UPSTREAM CG31673 DOWNSTREAM CG9331 INTERGENIC
2L	5024646	2L_5024646_SNP [dm3] 2L_5024646_SNP [dm6]	A	G	3.287e^-4	0.869	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5027498	2L_5027498_SNP [dm3] 2L_5027498_SNP [dm6]	C	T	3.287e^-4	0.869	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19055940	2R_19055940_SNP [dm3] 2R_23168417_SNP [dm6]	G	A	3.287e^-4	0.869	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20784925	3L_20784925_SNP [dm3] 3L_20791825_SNP [dm6]	C	G	3.307e^-4	0.869	INTRON Six4
3L	9902289	3L_9902289_DEL [dm3] 3L_9909189_DEL [dm6]	GG	G	3.313e^-4	0.869	INTRON CG34356
3L	1060396	3L_1060396_SNP [dm3] 3L_1060396_SNP [dm6]	G	A	3.316e^-4	0.869	INTRON bab1
3L	18610980	3L_18610980_SNP [dm3] 3L_18617880_SNP [dm6]	C	T	3.316e^-4	0.869	UTR_5_PRIME CG4174 & 1 other UPSTREAM CG13380 & 1 other DOWNSTREAM not	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4088592	3L_4088592_SNP [dm3] 3L_4088592_SNP [dm6]	A	C	3.316e^-4	0.869	START_GAINED Gad1 UTR_5_PRIME Gad1 UPSTREAM CG14989 & 1 other INTRON CG14989
3R	4947847	3R_4947847_SNP [dm3] 3R_9122125_SNP [dm6]	A	G	3.316e^-4	0.869	INTRON pum
3R	6270018	3R_6270018_SNP [dm3] 3R_10444296_SNP [dm6]	T	C	3.316e^-4	0.869	INTERGENIC
X	10968850	X_10968850_SNP [dm3] X_11074817_SNP [dm6]	G	A	3.321e^-4	0.869	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25076035	3R_25076035_SNP [dm3] 3R_29250313_SNP [dm6]	C	T	3.326e^-4	0.869	UTR_5_PRIME SP1029 INTRON SP1029
2L	14336254	2L_14336254_SNP [dm3] 2L_14336254_SNP [dm6]	T	G	3.331e^-4	0.869	INTRON CG33090
3L	4775453	3L_4775453_SNP [dm3] 3L_4775453_SNP [dm6]	A	T	3.345e^-4	0.869	INTRON RhoGEF64C
X	6104704	X_6104704_SNP [dm3] X_6210671_SNP [dm6]	A	G	3.346e^-4	0.869	INTERGENIC
2L	4447593	2L_4447593_SNP [dm3] 2L_4447593_SNP [dm6]	A	T	3.369e^-4	0.869	NON_SYNONYMOUS_CODING MFS18 DOWNSTREAM Elp3	TF binding site mE1_TFBS_sens
2R	19152023	2R_19152023_SNP [dm3] 2R_23264500_SNP [dm6]	C	T	3.378e^-4	0.869	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
2L	3604197	2L_3604197_SNP [dm3] 2L_3604197_SNP [dm6]	A	G	3.392e^-4	0.869	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	16597878	2L_16597878_SNP [dm3] 2L_16597878_SNP [dm6]	T	G	3.393e^-4	0.869	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	480145	2L_480145_DEL [dm3] 2L_480145_DEL [dm6]	AA	A	3.395e^-4	0.869	UPSTREAM cbt INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8471371	2R_8471371_SNP [dm3] 2R_12583866_SNP [dm6]	C	A	3.408e^-4	0.869	INTRON Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	21884321	X_21884321_SNP [dm3] X_22482485_SNP [dm6]	A	G	3.436e^-4	0.869	SPLICE_SITE_REGION Cp110 UTR_5_PRIME Cp110 UPSTREAM Cp110 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19881207	2L_19881207_SNP [dm3] 2L_19881207_SNP [dm6]	G	A	3.437e^-4	0.869	INTRON sick
X	19224647	X_19224647_SNP [dm3] X_19330614_SNP [dm6]	A	C	3.438e^-4	0.869	INTRON nAChRalpha7
3R	24624818	3R_24624818_SNP [dm3] 3R_28799096_SNP [dm6]	T	A	3.443e^-4	0.869	INTERGENIC
3L	18340888	3L_18340888_SNP [dm3] 3L_18347788_SNP [dm6]	G	A	3.469e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6477111	2L_6477111_DEL [dm3] 2L_6477111_DEL [dm6]	AAA	A	3.473e^-4	0.869	UPSTREAM CG9536 DOWNSTREAM Sec61alpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	15265229	2R_15265229_SNP [dm3] 2R_19377724_SNP [dm6]	A	C	3.500e^-4	0.869	INTRON CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6662570	3L_6662570_SNP [dm3] 3L_6669470_SNP [dm6]	T	A	3.510e^-4	0.869	INTERGENIC
3R	15374870	3R_15374870_SNP [dm3] 3R_19549148_SNP [dm6]	G	C	3.519e^-4	0.869	INTRON Dys
3R	17712759	3R_17712759_SNP [dm3] 3R_21887037_SNP [dm6]	G	A	3.522e^-4	0.869	UTR_5_PRIME CG6678 INTRON dnd
3R	24607937	3R_24607937_DEL [dm3] 3R_28782215_DEL [dm6]	ACATTATACAA...	A	3.524e^-4	0.869	INTERGENIC
3L	15599088	3L_15599088_SNP [dm3] 3L_15605988_SNP [dm6]	C	G	3.526e^-4	0.869	INTRON RhoGAP71E
3L	10728405	3L_10728405_MNP [dm3] 3L_10735305_MNP [dm6]	TGT	AAG	3.534e^-4	0.869	INTERGENIC
3R	17747316	3R_17747316_SNP [dm3] 3R_21921594_SNP [dm6]	C	A	3.538e^-4	0.869	INTERGENIC
3L	11510814	3L_11510814_SNP [dm3] 3L_11517714_SNP [dm6]	A	G	3.545e^-4	0.869	NON_SYNONYMOUS_CODING CG7512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	18462451	3R_18462451_SNP [dm3] 3R_22636729_SNP [dm6]	T	C	3.556e^-4	0.869	UPSTREAM loco INTRON loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21915617	X_21915617_SNP [dm3] X_22513781_SNP [dm6]	A	G	3.565e^-4	0.869	DOWNSTREAM CR43962 INTERGENIC
2L	9403143	2L_9403143_SNP [dm3] 2L_9403143_SNP [dm6]	A	C	3.579e^-4	0.869	INTRON Shawl
3L	12834275	3L_12834275_SNP [dm3] 3L_12841175_SNP [dm6]	A	G	3.583e^-4	0.869	INTRON CG10960
X	8951015	X_8951015_SNP [dm3] X_9056982_SNP [dm6]	A	G	3.588e^-4	0.869	INTRON CG15365	TF binding site mE1_TFBS_chinmo
2L	6485021	2L_6485021_SNP [dm3] 2L_6485021_SNP [dm6]	G	A	3.588e^-4	0.869	SYNONYMOUS_CODING DLP
X	6451079	X_6451079_SNP [dm3] X_6557046_SNP [dm6]	A	G	3.589e^-4	0.869	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	21571725	3R_21571725_SNP [dm3] 3R_25746003_SNP [dm6]	G	A	3.589e^-4	0.869	SYNONYMOUS_CODING LpR1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23798856	3R_23798856_SNP [dm3] 3R_27973134_SNP [dm6]	C	T	3.598e^-4	0.869	SYNONYMOUS_CODING betaTub97EF
3L	15741945	3L_15741945_SNP [dm3] 3L_15748845_SNP [dm6]	T	G	3.599e^-4	0.869	DOWNSTREAM CR45240 INTERGENIC
3R	10503142	3R_10503142_SNP [dm3] 3R_14677420_SNP [dm6]	T	C	3.632e^-4	0.869	INTRON Meltrin
3L	16953505	3L_16953505_INS [dm3] 3L_16960405_INS [dm6]	T	TT	3.634e^-4	0.869	INTRON Nc73EF
2R	13211443	2R_13211443_SNP [dm3] 2R_17323938_SNP [dm6]	A	G	3.635e^-4	0.869	INTRON mbl
2R	13211467	2R_13211467_SNP [dm3] 2R_17323962_SNP [dm6]	C	A	3.635e^-4	0.869	INTRON mbl
2R	19150467	2R_19150467_SNP [dm3] 2R_23262944_SNP [dm6]	G	A	3.635e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11780675	3R_11780675_SNP [dm3] 3R_15954953_SNP [dm6]	T	C	3.635e^-4	0.869	SYNONYMOUS_CODING Sap47
3R	18507277	3R_18507277_SNP [dm3] 3R_22681555_SNP [dm6]	G	C	3.635e^-4	0.869	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad
2L	22217118	2L_22217118_SNP [dm3] 2L_22217118_SNP [dm6]	G	A	3.650e^-4	0.869	INTERGENIC
2R	9459491	2R_9459491_SNP [dm3] 2R_13571986_SNP [dm6]	C	A	3.658e^-4	0.869	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9459493	2R_9459493_SNP [dm3] 2R_13571988_SNP [dm6]	C	T	3.658e^-4	0.869	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15893922	2L_15893922_SNP [dm3] 2L_15893922_SNP [dm6]	A	G	3.662e^-4	0.869	UPSTREAM Tep1 INTERGENIC
2L	4639412	2L_4639412_SNP [dm3] 2L_4639412_SNP [dm6]	C	A	3.662e^-4	0.869	INTERGENIC
3L	8568599	3L_8568599_SNP [dm3] 3L_8575499_SNP [dm6]	A	G	3.674e^-4	0.869	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	5586294	2R_5586294_INS [dm3] 2R_9698789_INS [dm6]	A	ACTA	3.693e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5586303	2R_5586303_SNP [dm3] 2R_9698798_SNP [dm6]	G	A	3.693e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12226809	2L_12226809_SNP [dm3] 2L_12226809_SNP [dm6]	C	A	3.696e^-4	0.869	INTRON aret
2L	12232346	2L_12232346_SNP [dm3] 2L_12232346_SNP [dm6]	G	A	3.696e^-4	0.869	INTRON aret
2L	12261016	2L_12261016_SNP [dm3] 2L_12261016_SNP [dm6]	A	C	3.696e^-4	0.869	INTRON aret
2L	12261121	2L_12261121_SNP [dm3] 2L_12261121_SNP [dm6]	C	A	3.696e^-4	0.869	INTRON aret	insulator Insulator_Class_II.mE01
2L	8959441	2L_8959441_SNP [dm3] 2L_8959441_SNP [dm6]	T	A	3.696e^-4	0.869	UTR_3_PRIME CG9525 UPSTREAM CG31886 DOWNSTREAM CG9525
3R	27138246	3R_27138246_INS [dm3] 3R_31312524_INS [dm6]	A	ATCCC	3.697e^-4	0.869	INTRON CG34347
3R	27138256	3R_27138256_SNP [dm3] 3R_31312534_SNP [dm6]	A	T	3.697e^-4	0.869	INTRON CG34347
3R	27138287	3R_27138287_SNP [dm3] 3R_31312565_SNP [dm6]	G	A	3.697e^-4	0.869	INTRON CG34347
2R	10532230	2R_10532230_SNP [dm3] 2R_14644725_SNP [dm6]	T	A	3.701e^-4	0.869	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532232	2R_10532232_SNP [dm3] 2R_14644727_SNP [dm6]	G	A	3.701e^-4	0.869	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532233	2R_10532233_SNP [dm3] 2R_14644728_SNP [dm6]	A	T	3.701e^-4	0.869	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3933183	2R_3933183_SNP [dm3] 2R_8045678_SNP [dm6]	T	G	3.703e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	22032380	X_22032380_SNP [dm3] X_22630544_SNP [dm6]	A	G	3.711e^-4	0.869	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13200443	X_13200443_SNP [dm3] X_13306410_SNP [dm6]	C	T	3.718e^-4	0.869	SYNONYMOUS_CODING IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3521948	3L_3521948_SNP [dm3] 3L_3521948_SNP [dm6]	C	A	3.723e^-4	0.869	DOWNSTREAM CR45043 INTRON Eip63E
3R	16348057	3R_16348057_SNP [dm3] 3R_20522335_SNP [dm6]	G	T	3.724e^-4	0.869	INTERGENIC
3R	16348087	3R_16348087_SNP [dm3] 3R_20522365_SNP [dm6]	G	T	3.724e^-4	0.869	INTERGENIC
X	14962508	X_14962508_SNP [dm3] X_15068475_SNP [dm6]	T	G	3.760e^-4	0.869	SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19379298	2L_19379298_SNP [dm3] 2L_19379298_SNP [dm6]	A	G	3.787e^-4	0.869	INTERGENIC
X	6780745	X_6780745_SNP [dm3] X_6886712_SNP [dm6]	G	A	3.791e^-4	0.869	INTERGENIC
3R	15976983	3R_15976983_SNP [dm3] 3R_20151261_SNP [dm6]	A	T	3.794e^-4	0.869	INTERGENIC
3R	15976997	3R_15976997_SNP [dm3] 3R_20151275_SNP [dm6]	G	T	3.794e^-4	0.869	INTERGENIC
3R	15976998	3R_15976998_SNP [dm3] 3R_20151276_SNP [dm6]	C	T	3.794e^-4	0.869	INTERGENIC
2R	15538617	2R_15538617_SNP [dm3] 2R_19651112_SNP [dm6]	G	C	3.798e^-4	0.869	INTERGENIC
3R	15318302	3R_15318302_SNP [dm3] 3R_19492580_SNP [dm6]	G	A	3.799e^-4	0.869	INTRON Dys
3R	15318381	3R_15318381_SNP [dm3] 3R_19492659_SNP [dm6]	A	G	3.799e^-4	0.869	INTRON Dys
3R	15318382	3R_15318382_SNP [dm3] 3R_19492660_SNP [dm6]	A	T	3.799e^-4	0.869	INTRON Dys
3R	15318392	3R_15318392_SNP [dm3] 3R_19492670_SNP [dm6]	C	A	3.799e^-4	0.869	INTRON Dys
3R	15318394	3R_15318394_SNP [dm3] 3R_19492672_SNP [dm6]	A	T	3.799e^-4	0.869	INTRON Dys
2L	3678343	2L_3678343_SNP [dm3] 2L_3678343_SNP [dm6]	T	A	3.800e^-4	0.869	INTRON CG34340
3L	8036894	3L_8036894_SNP [dm3] 3L_8043794_SNP [dm6]	G	T	3.801e^-4	0.869	INTRON nmo
X	5976508	X_5976508_SNP [dm3] X_6082475_SNP [dm6]	A	G	3.813e^-4	0.869	DOWNSTREAM raptor & 1 other INTERGENIC
3L	2746210	3L_2746210_SNP [dm3] 3L_2746210_SNP [dm6]	T	G	3.816e^-4	0.869	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19851504	3L_19851504_SNP [dm3] 3L_19858404_SNP [dm6]	C	T	3.827e^-4	0.869	SYNONYMOUS_CODING Papss
3R	26580162	3R_26580162_SNP [dm3] 3R_30754440_SNP [dm6]	G	C	3.840e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3442423	3L_3442423_SNP [dm3] 3L_3442423_SNP [dm6]	A	G	3.852e^-4	0.869	INTRON eIF5B
3R	25360543	3R_25360543_SNP [dm3] 3R_29534821_SNP [dm6]	A	T	3.855e^-4	0.869	INTRON CR43613	TF binding site mE1_TFBS_chinmo
2R	13099851	2R_13099851_SNP [dm3] 2R_17212346_SNP [dm6]	A	G	3.862e^-4	0.869	INTERGENIC
3R	24608844	3R_24608844_SNP [dm3] 3R_28783122_SNP [dm6]	T	A	3.862e^-4	0.869	INTERGENIC
3L	4084284	3L_4084284_SNP [dm3] 3L_4084284_SNP [dm6]	T	C	3.867e^-4	0.869	INTRON Gad1
3L	5357574	3L_5357574_SNP [dm3] 3L_5364474_SNP [dm6]	C	T	3.867e^-4	0.869	INTRON Uev1A	TF binding site mE1_TFBS_inv
3R	18610928	3R_18610928_SNP [dm3] 3R_22785206_SNP [dm6]	T	C	3.867e^-4	0.869	SYNONYMOUS_CODING CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15143280	2L_15143280_SNP [dm3] 2L_15143280_SNP [dm6]	C	G	3.868e^-4	0.869	INTERGENIC
3L	2654216	3L_2654216_SNP [dm3] 3L_2654216_SNP [dm6]	A	G	3.880e^-4	0.869	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
2L	13434534	2L_13434534_SNP [dm3] 2L_13434534_SNP [dm6]	G	A	3.889e^-4	0.869	INTRON CG42784	TF binding site mE1_TFBS_cad
2R	12399641	2R_12399641_SNP [dm3] 2R_16512136_SNP [dm6]	G	C	3.900e^-4	0.869	INTRON Sema-2a
2L	9362169	2L_9362169_SNP [dm3] 2L_9362169_SNP [dm6]	G	A	3.912e^-4	0.869	INTERGENIC
3L	7977412	3L_7977412_SNP [dm3] 3L_7984312_SNP [dm6]	A	G	3.935e^-4	0.869	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10563341	2R_10563341_SNP [dm3] 2R_14675836_SNP [dm6]	C	T	3.952e^-4	0.869	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
3L	7179016	3L_7179016_SNP [dm3] 3L_7185916_SNP [dm6]	T	C	3.956e^-4	0.869	INTRON Dscam2
2R	9638666	2R_9638666_SNP [dm3] 2R_13751161_SNP [dm6]	T	C	3.963e^-4	0.869	INTERGENIC
2L	16696316	2L_16696316_SNP [dm3] 2L_16696316_SNP [dm6]	G	T	3.964e^-4	0.869	INTRON grp	TF binding site BDTNP1_TFBS_twi
2L	12378205	2L_12378205_SNP [dm3] 2L_12378205_SNP [dm6]	T	A	3.984e^-4	0.869	INTRON bru-2
3L	14039751	3L_14039751_SNP [dm3] 3L_14046651_SNP [dm6]	A	C	3.989e^-4	0.869	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26184013	3R_26184013_SNP [dm3] 3R_30358291_SNP [dm6]	G	C	4.007e^-4	0.869	SYNONYMOUS_CODING hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4473278	2L_4473278_SNP [dm3] 2L_4473278_SNP [dm6]	T	C	4.007e^-4	0.869	UPSTREAM ine INTRON ine
2L	4646770	2L_4646770_SNP [dm3] 2L_4646770_SNP [dm6]	T	C	4.007e^-4	0.869	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
2R	18113411	2R_18113411_SNP [dm3] 2R_22225906_SNP [dm6]	C	G	4.007e^-4	0.869	SPLICE_SITE_REGION Oatp58Dc INTRON Oatp58Dc
3R	16452800	3R_16452800_SNP [dm3] 3R_20627078_SNP [dm6]	A	T	4.013e^-4	0.869	UTR_3_PRIME H
3L	1937710	3L_1937710_SNP [dm3] 3L_1937710_SNP [dm6]	T	A	4.023e^-4	0.869	INTRON CG5687
2L	11446141	2L_11446141_SNP [dm3] 2L_11446141_SNP [dm6]	C	T	4.026e^-4	0.869	UPSTREAM salm INTERGENIC	regulatory region FlyBase silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12339420	2L_12339420_DEL [dm3] 2L_12339420_DEL [dm6]	CC	C	4.026e^-4	0.869	UTR_3_PRIME CG31862
2L	5443241	2L_5443241_SNP [dm3] 2L_5443241_SNP [dm6]	T	C	4.026e^-4	0.869	INTERGENIC
2L	9340003	2L_9340003_SNP [dm3] 2L_9340003_SNP [dm6]	T	A	4.026e^-4	0.869	SPLICE_SITE_REGION Eaat1 INTRON Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9340015	2L_9340015_SNP [dm3] 2L_9340015_SNP [dm6]	A	G	4.026e^-4	0.869	INTRON Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	22145455	3R_22145455_SNP [dm3] 3R_26319733_SNP [dm6]	G	T	4.049e^-4	0.869	INTRON CG33970
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	4.054e^-4	0.869	INTERGENIC
2R	5103761	2R_5103761_SNP [dm3] 2R_9216256_SNP [dm6]	A	C	4.054e^-4	0.869	INTERGENIC
2R	5103772	2R_5103772_SNP [dm3] 2R_9216267_SNP [dm6]	G	A	4.054e^-4	0.869	INTERGENIC
2R	5103775	2R_5103775_INS [dm3] 2R_9216270_INS [dm6]	G	GAG	4.054e^-4	0.869	INTERGENIC
X	16786552	X_16786552_SNP [dm3] X_16892519_SNP [dm6]	C	T	4.054e^-4	0.869	INTERGENIC
2L	14604070	2L_14604070_SNP [dm3] 2L_14604070_SNP [dm6]	A	G	4.055e^-4	0.869	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	6450280	X_6450280_SNP [dm3] X_6556247_SNP [dm6]	G	A	4.056e^-4	0.869	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	7221362	3L_7221362_SNP [dm3] 3L_7228262_SNP [dm6]	A	G	4.090e^-4	0.869	INTERGENIC
3L	15713736	3L_15713736_SNP [dm3] 3L_15720636_SNP [dm6]	C	G	4.091e^-4	0.869	DOWNSTREAM CG42570 & 1 other INTERGENIC
2L	2516884	2L_2516884_SNP [dm3] 2L_2516884_SNP [dm6]	T	C	4.093e^-4	0.869	DOWNSTREAM CG3528 INTERGENIC
3L	17031744	3L_17031744_SNP [dm3] 3L_17038644_SNP [dm6]	C	T	4.093e^-4	0.869	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6258487	3R_6258487_SNP [dm3] 3R_10432765_SNP [dm6]	T	C	4.094e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10031317	3R_10031317_SNP [dm3] 3R_14205595_SNP [dm6]	T	A	4.100e^-4	0.869	INTRON Dop1R1
3R	10031355	3R_10031355_SNP [dm3] 3R_14205633_SNP [dm6]	C	A	4.100e^-4	0.869	INTRON Dop1R1
3L	8568722	3L_8568722_SNP [dm3] 3L_8575622_SNP [dm6]	G	A	4.160e^-4	0.869	SYNONYMOUS_CODING CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9362155	2L_9362155_SNP [dm3] 2L_9362155_SNP [dm6]	T	A	4.176e^-4	0.869	INTERGENIC
2R	10116912	2R_10116912_SNP [dm3] 2R_14229407_SNP [dm6]	C	G	4.178e^-4	0.869	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16911102	3R_16911102_SNP [dm3] 3R_21085380_SNP [dm6]	G	A	4.192e^-4	0.869	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad
2R	11873305	2R_11873305_SNP [dm3] 2R_15985800_SNP [dm6]	A	G	4.199e^-4	0.869	INTRON Strn-Mlck
2L	17391435	2L_17391435_SNP [dm3] 2L_17391435_SNP [dm6]	A	G	4.204e^-4	0.869	INTRON CLIP-190
3R	12416239	3R_12416239_SNP [dm3] 3R_16590517_SNP [dm6]	A	T	4.208e^-4	0.869	INTERGENIC
X	19060932	X_19060932_INS [dm3] X_19166899_INS [dm6]	T	TCT	4.221e^-4	0.869	UTR_5_PRIME RhoGAP18B	TF binding site BDTNP1_TFBS_dl
2L	5145829	2L_5145829_SNP [dm3] 2L_5145829_SNP [dm6]	C	T	4.224e^-4	0.869	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5145835	2L_5145835_SNP [dm3] 2L_5145835_SNP [dm6]	C	T	4.224e^-4	0.869	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18375879	2L_18375879_SNP [dm3] 2L_18375879_SNP [dm6]	T	C	4.225e^-4	0.869	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9663838	X_9663838_SNP [dm3] X_9769805_SNP [dm6]	T	C	4.231e^-4	0.869	INTERGENIC
2L	12200176	2L_12200176_SNP [dm3] 2L_12200176_SNP [dm6]	G	T	4.243e^-4	0.869	INTRON aret
2L	12336157	2L_12336157_SNP [dm3] 2L_12336157_SNP [dm6]	C	A	4.252e^-4	0.869	INTERGENIC
3L	17022888	3L_17022888_SNP [dm3] 3L_17029788_SNP [dm6]	A	T	4.258e^-4	0.869	UTR_3_PRIME CG7730 DOWNSTREAM Ilp8
3R	27455308	3R_27455308_SNP [dm3] 3R_31629586_SNP [dm6]	A	G	4.258e^-4	0.869	INTRON kek6
3R	27455309	3R_27455309_SNP [dm3] 3R_31629587_SNP [dm6]	A	G	4.258e^-4	0.869	INTRON kek6
3L	6250423	3L_6250423_SNP [dm3] 3L_6257323_SNP [dm6]	G	T	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250426	3L_6250426_SNP [dm3] 3L_6257326_SNP [dm6]	T	G	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250428	3L_6250428_SNP [dm3] 3L_6257328_SNP [dm6]	T	G	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250444	3L_6250444_SNP [dm3] 3L_6257344_SNP [dm6]	T	G	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250462	3L_6250462_SNP [dm3] 3L_6257362_SNP [dm6]	T	C	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250464	3L_6250464_SNP [dm3] 3L_6257364_SNP [dm6]	C	G	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6250465	3L_6250465_DEL [dm3] 3L_6257365_DEL [dm6]	CATGAATAAATTGA...	C	4.261e^-4	0.869	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14903618	2R_14903618_SNP [dm3] 2R_19016113_SNP [dm6]	C	G	4.265e^-4	0.869	INTERGENIC
4	224465	4_224465_SNP [dm3] 4_203839_SNP [dm6]	C	G	4.282e^-4	0.869	INTRON CG31998
4	251049	4_251049_SNP [dm3] 4_230423_SNP [dm6]	C	A	4.282e^-4	0.869	UTR_3_PRIME yellow-h UPSTREAM CG1674	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
4	321505	4_321505_SNP [dm3] 4_300879_SNP [dm6]	C	T	4.282e^-4	0.869	INTRON Syt7
4	328647	4_328647_SNP [dm3] 4_308021_SNP [dm6]	A	C	4.282e^-4	0.869	UPSTREAM Rad23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10121389	2R_10121389_SNP [dm3] 2R_14233884_SNP [dm6]	G	A	4.288e^-4	0.869	SYNONYMOUS_CODING Opa1 UPSTREAM mir-1016	TF binding site mE1_TFBS_sens
X	6286639	X_6286639_SNP [dm3] X_6392606_SNP [dm6]	G	A	4.303e^-4	0.869	INTERGENIC
X	3760801	X_3760801_SNP [dm3] X_3866768_SNP [dm6]	G	C	4.318e^-4	0.869	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
3L	510071	3L_510071_SNP [dm3] 3L_510071_SNP [dm6]	T	C	4.322e^-4	0.869	INTRON klar
3L	2821996	3L_2821996_SNP [dm3] 3L_2821996_SNP [dm6]	A	T	4.326e^-4	0.869	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7735059	3L_7735059_SNP [dm3] 3L_7741959_SNP [dm6]	G	A	4.330e^-4	0.869	INTRON CG32373 & 1 other
X	9595758	X_9595758_DEL [dm3] X_9701725_DEL [dm6]	ACA	A	4.338e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3966481	X_3966481_SNP [dm3] X_4072448_SNP [dm6]	T	C	4.341e^-4	0.869	INTERGENIC
3L	4118994	3L_4118994_SNP [dm3] 3L_4118994_SNP [dm6]	G	T	4.347e^-4	0.869	INTRON Chd64
2L	16702132	2L_16702132_DEL [dm3] 2L_16702132_DEL [dm6]	CTTCTTC	C	4.356e^-4	0.869	EXON CR43670	TF binding site mE1_TFBS_sens
X	4325251	X_4325251_SNP [dm3] X_4431218_SNP [dm6]	G	A	4.357e^-4	0.869	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	14207491	3L_14207491_SNP [dm3] 3L_14214391_SNP [dm6]	A	C	4.358e^-4	0.869	INTRON nuf	TF binding site mE1_TFBS_inv
2L	18371225	2L_18371225_SNP [dm3] 2L_18371225_SNP [dm6]	G	A	4.375e^-4	0.869	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18148701	3L_18148701_SNP [dm3] 3L_18155601_SNP [dm6]	A	G	4.385e^-4	0.869	SYNONYMOUS_CODING CG13699
2L	21912234	2L_21912234_SNP [dm3] 2L_21912234_SNP [dm6]	G	A	4.388e^-4	0.869	INTERGENIC	transposable element FlyBase
2L	9403338	2L_9403338_SNP [dm3] 2L_9403338_SNP [dm6]	G	C	4.403e^-4	0.869	INTRON Shawl
2R	3017632	2R_3017632_SNP [dm3] 2R_7130127_SNP [dm6]	T	G	4.407e^-4	0.869	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	18930673	2R_18930673_SNP [dm3] 2R_23043150_SNP [dm6]	G	T	4.419e^-4	0.869	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3445787	3L_3445787_SNP [dm3] 3L_3445787_SNP [dm6]	A	G	4.425e^-4	0.869	INTRON eIF5B
2L	494872	2L_494872_SNP [dm3] 2L_494872_SNP [dm6]	C	A	4.429e^-4	0.869	INTRON ush
2L	494923	2L_494923_SNP [dm3] 2L_494923_SNP [dm6]	A	T	4.429e^-4	0.869	INTRON ush
2L	12212794	2L_12212794_SNP [dm3] 2L_12212794_SNP [dm6]	C	T	4.432e^-4	0.869	INTRON aret
X	14819094	X_14819094_SNP [dm3] X_14925061_SNP [dm6]	T	C	4.439e^-4	0.869	UPSTREAM Flo2 INTRON Flo2
3L	3444143	3L_3444143_SNP [dm3] 3L_3444143_SNP [dm6]	G	T	4.458e^-4	0.869	INTRON eIF5B
3R	10410405	3R_10410405_SNP [dm3] 3R_14584683_SNP [dm6]	A	T	4.458e^-4	0.869	INTRON stumps
X	11137635	X_11137635_SNP [dm3] X_11243602_SNP [dm6]	C	A	4.469e^-4	0.869	INTRON CG44422
3R	15263630	3R_15263630_SNP [dm3] 3R_19437908_SNP [dm6]	T	G	4.472e^-4	0.869	INTRON CG31221
3L	17007003	3L_17007003_SNP [dm3] 3L_17013903_SNP [dm6]	T	G	4.477e^-4	0.869	SYNONYMOUS_CODING CG6664	TF binding site mE1_TFBS_chinmo
X	8274361	X_8274361_SNP [dm3] X_8380328_SNP [dm6]	T	C	4.490e^-4	0.869	INTERGENIC
2R	5354146	2R_5354146_SNP [dm3] 2R_9466641_SNP [dm6]	C	A	4.502e^-4	0.869	INTRON Camta
3R	26993646	3R_26993646_SNP [dm3] 3R_31167924_SNP [dm6]	T	A	4.506e^-4	0.869	INTRON Gycbeta100B & 1 other
3R	26993686	3R_26993686_SNP [dm3] 3R_31167964_SNP [dm6]	C	T	4.506e^-4	0.869	INTRON Gycbeta100B & 1 other
3R	26993698	3R_26993698_SNP [dm3] 3R_31167976_SNP [dm6]	G	T	4.506e^-4	0.869	INTRON Gycbeta100B & 1 other
2L	12341009	2L_12341009_SNP [dm3] 2L_12341009_SNP [dm6]	G	A	4.525e^-4	0.869	INTERGENIC
2L	12378348	2L_12378348_SNP [dm3] 2L_12378348_SNP [dm6]	A	T	4.525e^-4	0.869	INTRON bru-2
3L	4049276	3L_4049276_SNP [dm3] 3L_4049276_SNP [dm6]	T	C	4.536e^-4	0.869	INTRON CG1136
2R	15385959	2R_15385959_SNP [dm3] 2R_19498454_SNP [dm6]	G	A	4.537e^-4	0.869	INTRON CG15120	TF binding site mE1_TFBS_cad
3R	15521671	3R_15521671_SNP [dm3] 3R_19695949_SNP [dm6]	A	T	4.538e^-4	0.869	INTRON Naam
3R	15318363	3R_15318363_SNP [dm3] 3R_19492641_SNP [dm6]	C	T	4.548e^-4	0.869	INTRON Dys
2L	4855076	2L_4855076_SNP [dm3] 2L_4855076_SNP [dm6]	T	C	4.553e^-4	0.869	INTRON pog	TF binding site mE1_TFBS_HSA
X	7257521	X_7257521_SNP [dm3] X_7363488_SNP [dm6]	G	A	4.558e^-4	0.869	INTRON CG1677 & 1 other
2L	10482024	2L_10482024_SNP [dm3] 2L_10482024_SNP [dm6]	T	A	4.558e^-4	0.869	INTRON RluA-2	TF binding site mE1_TFBS_sens
3R	27861207	3R_27861207_SNP [dm3] 3R_32035485_SNP [dm6]	G	A	4.559e^-4	0.869	INTERGENIC
2L	9439677	2L_9439677_SNP [dm3] 2L_9439677_SNP [dm6]	G	A	4.562e^-4	0.869	DOWNSTREAM CG33723 INTRON numb
3L	8204935	3L_8204935_SNP [dm3] 3L_8211835_SNP [dm6]	G	A	4.565e^-4	0.869	UPSTREAM CG8006 INTERGENIC
2L	21823374	2L_21823374_SNP [dm3] 2L_21823374_SNP [dm6]	G	A	4.586e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	4.586e^-4	0.869	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
X	6451185	X_6451185_SNP [dm3] X_6557152_SNP [dm6]	C	T	4.601e^-4	0.869	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	14569275	2L_14569275_SNP [dm3] 2L_14569275_SNP [dm6]	A	G	4.608e^-4	0.869	INTERGENIC
2L	7454805	2L_7454805_SNP [dm3] 2L_7454805_SNP [dm6]	C	A	4.614e^-4	0.869	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
3R	16194898	3R_16194898_SNP [dm3] 3R_20369176_SNP [dm6]	A	G	4.636e^-4	0.869	INTERGENIC
3R	16194904	3R_16194904_SNP [dm3] 3R_20369182_SNP [dm6]	C	G	4.636e^-4	0.869	INTERGENIC
3R	16194940	3R_16194940_SNP [dm3] 3R_20369218_SNP [dm6]	G	A	4.636e^-4	0.869	INTERGENIC
2L	14381348	2L_14381348_SNP [dm3] 2L_14381348_SNP [dm6]	G	A	4.638e^-4	0.869	UPSTREAM ppk INTERGENIC
2L	14381357	2L_14381357_SNP [dm3] 2L_14381357_SNP [dm6]	A	T	4.638e^-4	0.869	UPSTREAM ppk INTERGENIC
X	12605485	X_12605485_SNP [dm3] X_12711452_SNP [dm6]	A	T	4.638e^-4	0.869	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
X	12605491	X_12605491_SNP [dm3] X_12711458_SNP [dm6]	C	T	4.638e^-4	0.869	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
3L	15595104	3L_15595104_INS [dm3] 3L_15602004_INS [dm6]	C	CGCC	4.639e^-4	0.869	INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14337377	3L_14337377_DEL [dm3] 3L_14344277_DEL [dm6]	CTGGACAATAT...	C	4.640e^-4	0.869	INTRON fz
X	10153646	X_10153646_DEL [dm3] X_10259613_DEL [dm6]	CACTT	C	4.662e^-4	0.869	INTRON CR43959 & 1 other
3R	14168715	3R_14168715_SNP [dm3] 3R_18342993_SNP [dm6]	T	C	4.664e^-4	0.869	INTRON CG15803
2R	3448818	2R_3448818_SNP [dm3] 2R_7561313_SNP [dm6]	G	A	4.666e^-4	0.869	UTR_3_PRIME Corin	TF binding site mE1_TFBS_cad
3R	14160137	3R_14160137_SNP [dm3] 3R_18334415_SNP [dm6]	G	A	4.676e^-4	0.869	INTRON CG15803
3L	7000399	3L_7000399_SNP [dm3] 3L_7007299_SNP [dm6]	A	G	4.679e^-4	0.869	INTRON Mp
2L	9398110	2L_9398110_SNP [dm3] 2L_9398110_SNP [dm6]	G	C	4.704e^-4	0.869	UPSTREAM CG4438 INTRON Shawl
3L	17485585	3L_17485585_SNP [dm3] 3L_17492485_SNP [dm6]	G	T	4.719e^-4	0.869	INTRON Oatp74D
3R	17559902	3R_17559902_SNP [dm3] 3R_21734180_SNP [dm6]	G	A	4.722e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	19309964	2R_19309964_SNP [dm3] 2R_23422441_SNP [dm6]	C	T	4.728e^-4	0.869	SYNONYMOUS_CODING CG9815
2R	18123849	2R_18123849_SNP [dm3] 2R_22236344_SNP [dm6]	A	G	4.744e^-4	0.869	EXON CR44755
X	5749572	X_5749572_SNP [dm3] X_5855539_SNP [dm6]	T	C	4.759e^-4	0.869	INTERGENIC
2R	19152134	2R_19152134_SNP [dm3] 2R_23264611_SNP [dm6]	T	C	4.781e^-4	0.869	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
X	20016106	X_20016106_SNP [dm3] X_20122073_SNP [dm6]	A	C	4.782e^-4	0.869	UPSTREAM CG34331 INTERGENIC
2R	15321159	2R_15321159_SNP [dm3] 2R_19433654_SNP [dm6]	A	C	4.789e^-4	0.869	INTRON Fak	TF binding site mE1_TFBS_inv
2L	966894	2L_966894_DEL [dm3] 2L_966894_DEL [dm6]	CACAC	C	4.789e^-4	0.869	INTERGENIC
2L	18376026	2L_18376026_SNP [dm3] 2L_18376026_SNP [dm6]	C	A	4.798e^-4	0.869	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16559079	X_16559079_SNP [dm3] X_16665046_SNP [dm6]	G	T	4.805e^-4	0.869	UPSTREAM CG15865 INTRON r
3R	25587716	3R_25587716_SNP [dm3] 3R_29761994_SNP [dm6]	A	T	4.814e^-4	0.869	INTERGENIC
3L	18145711	3L_18145711_SNP [dm3] 3L_18152611_SNP [dm6]	A	G	4.823e^-4	0.869	INTRON CG7330
3R	7170076	3R_7170076_SNP [dm3] 3R_11344354_SNP [dm6]	T	C	4.832e^-4	0.869	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	11424174	2L_11424174_SNP [dm3] 2L_11424174_SNP [dm6]	A	T	4.836e^-4	0.869	INTERGENIC
2L	10875942	2L_10875942_SNP [dm3] 2L_10875942_SNP [dm6]	C	T	4.856e^-4	0.869	INTERGENIC
X	8141071	X_8141071_SNP [dm3] X_8247038_SNP [dm6]	G	T	4.858e^-4	0.869	NON_SYNONYMOUS_CODING Trxr-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6570808	2R_6570808_SNP [dm3] 2R_10683303_SNP [dm6]	A	G	4.860e^-4	0.869	INTRON stan	TF binding site BDTNP1_TFBS_dl
2L	7460966	2L_7460966_SNP [dm3] 2L_7460966_SNP [dm6]	A	G	4.864e^-4	0.869	UPSTREAM Gr28b INTRON Gr28b
2L	8301992	2L_8301992_SNP [dm3] 2L_8301992_SNP [dm6]	G	A	4.864e^-4	0.869	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7773429	3L_7773429_SNP [dm3] 3L_7780329_SNP [dm6]	G	A	4.864e^-4	0.869	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
3R	13003312	3R_13003312_SNP [dm3] 3R_17177590_SNP [dm6]	C	T	4.864e^-4	0.869	INTRON Mur89F
3R	17947448	3R_17947448_DEL [dm3] 3R_22121726_DEL [dm6]	AA	G	4.864e^-4	0.869	INTRON CG42390
2L	6793085	2L_6793085_SNP [dm3] 2L_6793085_SNP [dm6]	G	A	4.877e^-4	0.869	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17532838	2L_17532838_SNP [dm3] 2L_17532838_SNP [dm6]	C	T	4.879e^-4	0.869	UPSTREAM CG15145 INTERGENIC
3R	18462401	3R_18462401_SNP [dm3] 3R_22636679_SNP [dm6]	G	A	4.899e^-4	0.869	UPSTREAM loco INTRON loco	TF binding site mE1_TFBS_cad
2R	13206709	2R_13206709_SNP [dm3] 2R_17319204_SNP [dm6]	A	C	4.901e^-4	0.869	INTRON mbl
X	18214878	X_18214878_SNP [dm3] X_18320845_SNP [dm6]	T	C	4.909e^-4	0.869	INTRON CG6023	TF binding site BDTNP1_TFBS_dl
3R	11544562	3R_11544562_SNP [dm3] 3R_15718840_SNP [dm6]	T	G	4.911e^-4	0.869	INTERGENIC
X	20557149	X_20557149_SNP [dm3] X_20686122_SNP [dm6]	C	A	4.911e^-4	0.869	UPSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	4.914e^-4	0.869	INTRON shot
2R	11078203	2R_11078203_SNP [dm3] 2R_15190698_SNP [dm6]	C	G	4.933e^-4	0.869	DOWNSTREAM igl INTERGENIC
3L	1465914	3L_1465914_SNP [dm3] 3L_1465914_SNP [dm6]	G	C	4.938e^-4	0.869	INTRON Ptp61F & 1 other
3L	18259127	3L_18259127_SNP [dm3] 3L_18266027_SNP [dm6]	T	A	4.938e^-4	0.869	INTERGENIC
X	4711759	X_4711759_SNP [dm3] X_4817726_SNP [dm6]	C	T	4.938e^-4	0.869	INTERGENIC
2L	13458847	2L_13458847_SNP [dm3] 2L_13458847_SNP [dm6]	G	T	4.942e^-4	0.869	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
X	16249356	X_16249356_DEL [dm3] X_16355323_DEL [dm6]	CAAAAGTTAAGTACATTAAG...	C	4.947e^-4	0.869	UTR_3_PRIME sl
3R	17363689	3R_17363689_SNP [dm3] 3R_21537967_SNP [dm6]	C	G	4.949e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	1159769	3R_1159769_SNP [dm3] 3R_5334047_SNP [dm6]	T	C	4.956e^-4	0.869	INTRON mtd
3L	4610327	3L_4610327_SNP [dm3] 3L_4610327_SNP [dm6]	T	C	4.960e^-4	0.869	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1227608	3R_1227608_SNP [dm3] 3R_5401886_SNP [dm6]	A	G	4.962e^-4	0.869	INTRON CG2663	TF binding site mE1_TFBS_cad
3R	1233930	3R_1233930_SNP [dm3] 3R_5408208_SNP [dm6]	T	C	4.962e^-4	0.869	SYNONYMOUS_CODING Orco
2R	10204117	2R_10204117_SNP [dm3] 2R_14316612_SNP [dm6]	T	G	4.962e^-4	0.869	INTRON Shroom
3R	24612703	3R_24612703_SNP [dm3] 3R_28786981_SNP [dm6]	C	T	4.964e^-4	0.869	INTERGENIC
2L	7775241	2L_7775241_SNP [dm3] 2L_7775241_SNP [dm6]	T	A	4.995e^-4	0.869	DOWNSTREAM CG7179 & 1 other INTERGENIC
X	6512882	X_6512882_SNP [dm3] X_6618849_SNP [dm6]	T	C	5.012e^-4	0.869	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11295818	2R_11295818_DEL [dm3] 2R_15408313_DEL [dm6]	AATGACAAACAAGA...	A	5.062e^-4	0.869	UPSTREAM Mtk INTRON CG43729
2L	6532100	2L_6532100_SNP [dm3] 2L_6532100_SNP [dm6]	G	T	5.069e^-4	0.869	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10121260	2R_10121260_SNP [dm3] 2R_14233755_SNP [dm6]	G	A	5.073e^-4	0.869	SYNONYMOUS_CODING Opa1 UPSTREAM mir-1016	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4659008	2L_4659008_SNP [dm3] 2L_4659008_SNP [dm6]	A	G	5.081e^-4	0.869	INTERGENIC
2R	3501170	2R_3501170_INS [dm3] 2R_7613665_INS [dm6]	T	TCAGATG	5.085e^-4	0.869	UTR_5_PRIME CG1358 INTRON CG1358	TF binding site BDTNP1_TFBS_twi
3L	3446459	3L_3446459_SNP [dm3] 3L_3446459_SNP [dm6]	G	A	5.107e^-4	0.869	INTRON eIF5B
3R	27454558	3R_27454558_SNP [dm3] 3R_31628836_SNP [dm6]	G	T	5.156e^-4	0.869	INTRON kek6
3R	27454573	3R_27454573_SNP [dm3] 3R_31628851_SNP [dm6]	C	G	5.156e^-4	0.869	INTRON kek6
X	3071095	X_3071095_SNP [dm3] X_3177062_SNP [dm6]	C	G	5.157e^-4	0.869	DOWNSTREAM CG3939 INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	8047567	2L_8047567_SNP [dm3] 2L_8047567_SNP [dm6]	C	A	5.172e^-4	0.869	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6572380	3L_6572380_SNP [dm3] 3L_6579280_SNP [dm6]	C	A	5.183e^-4	0.869	INTRON CG18769 & 1 other
3L	15713742	3L_15713742_SNP [dm3] 3L_15720642_SNP [dm6]	T	C	5.184e^-4	0.869	DOWNSTREAM CG42570 & 1 other INTERGENIC
X	3966493	X_3966493_DEL [dm3] X_4072460_DEL [dm6]	GTG	G	5.201e^-4	0.869	INTERGENIC
2L	14368068	2L_14368068_SNP [dm3] 2L_14368068_SNP [dm6]	T	G	5.205e^-4	0.869	INTERGENIC
2R	14602282	2R_14602282_SNP [dm3] 2R_18714777_SNP [dm6]	C	A	5.207e^-4	0.869	INTERGENIC
2L	18264841	2L_18264841_SNP [dm3] 2L_18264841_SNP [dm6]	C	T	5.214e^-4	0.869	INTRON CG42750
2L	7461008	2L_7461008_SNP [dm3] 2L_7461008_SNP [dm6]	A	T	5.217e^-4	0.869	UPSTREAM Gr28b INTRON Gr28b
2L	8622019	2L_8622019_SNP [dm3] 2L_8622019_SNP [dm6]	T	C	5.221e^-4	0.869	INTRON Sema-1a
2L	7085779	2L_7085779_SNP [dm3] 2L_7085779_SNP [dm6]	T	C	5.227e^-4	0.869	INTERGENIC
3R	26992081	3R_26992081_SNP [dm3] 3R_31166359_SNP [dm6]	A	G	5.230e^-4	0.869	SYNONYMOUS_CODING stops INTRON Gycbeta100B	TF binding site mE1_TFBS_inv
2R	6164991	2R_6164991_SNP [dm3] 2R_10277486_SNP [dm6]	G	T	5.235e^-4	0.869	INTRON CAP
3L	18209327	3L_18209327_SNP [dm3] 3L_18216227_SNP [dm6]	T	A	5.240e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5601247	2R_5601247_SNP [dm3] 2R_9713742_SNP [dm6]	T	G	5.272e^-4	0.869	INTRON dap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	5601269	2R_5601269_SNP [dm3] 2R_9713764_SNP [dm6]	G	A	5.272e^-4	0.869	INTRON dap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	6668913	3L_6668913_SNP [dm3] 3L_6675813_SNP [dm6]	T	C	5.282e^-4	0.869	INTERGENIC
3L	12434983	3L_12434983_SNP [dm3] 3L_12441883_SNP [dm6]	T	C	5.283e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2585636	2L_2585636_SNP [dm3] 2L_2585636_SNP [dm6]	C	T	5.287e^-4	0.869	UPSTREAM Drp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	2585639	2L_2585639_SNP [dm3] 2L_2585639_SNP [dm6]	A	T	5.287e^-4	0.869	UPSTREAM Drp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	2692822	2L_2692822_SNP [dm3] 2L_2692822_SNP [dm6]	T	C	5.306e^-4	0.869	INTRON CG31690
2L	2692824	2L_2692824_SNP [dm3] 2L_2692824_SNP [dm6]	C	T	5.306e^-4	0.869	INTRON CG31690
3R	14896172	3R_14896172_SNP [dm3] 3R_19070450_SNP [dm6]	C	G	5.312e^-4	0.869	INTRON cdi
2L	4718102	2L_4718102_SNP [dm3] 2L_4718102_SNP [dm6]	G	A	5.313e^-4	0.869	INTRON CG34351
X	16598484	X_16598484_SNP [dm3] X_16704451_SNP [dm6]	A	T	5.318e^-4	0.869	UPSTREAM CG9673 INTRON CG4678 & 1 other
3L	17979066	3L_17979066_SNP [dm3] 3L_17985966_SNP [dm6]	A	T	5.320e^-4	0.869	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24969619	3R_24969619_SNP [dm3] 3R_29143897_SNP [dm6]	G	A	5.323e^-4	0.869	INTRON CG14516
3R	24969624	3R_24969624_SNP [dm3] 3R_29143902_SNP [dm6]	C	T	5.323e^-4	0.869	SPLICE_SITE_REGION CG14516 INTRON CG14516
2L	4442692	2L_4442692_SNP [dm3] 2L_4442692_SNP [dm6]	C	A	5.359e^-4	0.869	SYNONYMOUS_CODING CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	1092271	3L_1092271_SNP [dm3] 3L_1092271_SNP [dm6]	C	G	5.361e^-4	0.869	INTRON bab1	regulatory region REDfly_CRMs
2L	14336255	2L_14336255_SNP [dm3] 2L_14336255_SNP [dm6]	G	A	5.366e^-4	0.869	INTRON CG33090
3R	26176265	3R_26176265_SNP [dm3] 3R_30350543_SNP [dm6]	C	G	5.368e^-4	0.869	INTRON hdc
2R	17935034	2R_17935034_SNP [dm3] 2R_22047529_SNP [dm6]	A	T	5.368e^-4	0.869	INTERGENIC
3R	27138231	3R_27138231_SNP [dm3] 3R_31312509_SNP [dm6]	G	T	5.370e^-4	0.869	INTRON CG34347
3R	18800128	3R_18800128_SNP [dm3] 3R_22974406_SNP [dm6]	G	C	5.376e^-4	0.869	INTERGENIC
2L	10097764	2L_10097764_SNP [dm3] 2L_10097764_SNP [dm6]	T	A	5.382e^-4	0.869	INTRON CG34109 & 1 other
3L	15865339	3L_15865339_SNP [dm3] 3L_15872239_SNP [dm6]	C	G	5.386e^-4	0.869	INTRON pHCl
3R	9482577	3R_9482577_SNP [dm3] 3R_13656855_SNP [dm6]	A	G	5.386e^-4	0.869	UTR_3_PRIME Hrb87F UPSTREAM Rbp4 DOWNSTREAM Hrb87F	TF binding site mE1_TFBS_cnc
2L	10684734	2L_10684734_SNP [dm3] 2L_10684734_SNP [dm6]	A	G	5.393e^-4	0.869	UPSTREAM CG7299 INTERGENIC
2L	6176837	2L_6176837_SNP [dm3] 2L_6176837_SNP [dm6]	C	T	5.393e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5433931	2L_5433931_SNP [dm3] 2L_5433931_SNP [dm6]	A	T	5.400e^-4	0.869	DOWNSTREAM CR43714 EXON CR43715	TF binding site mE1_TFBS_Kr
X	3765012	X_3765012_SNP [dm3] X_3870979_SNP [dm6]	T	G	5.406e^-4	0.869	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3R	17163739	3R_17163739_SNP [dm3] 3R_21338017_SNP [dm6]	A	T	5.413e^-4	0.869	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10241849	3R_10241849_SNP [dm3] 3R_14416127_SNP [dm6]	A	G	5.420e^-4	0.869	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10241850	3R_10241850_SNP [dm3] 3R_14416128_SNP [dm6]	T	A	5.420e^-4	0.869	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6450108	X_6450108_SNP [dm3] X_6556075_SNP [dm6]	C	T	5.421e^-4	0.869	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	26993774	3R_26993774_SNP [dm3] 3R_31168052_SNP [dm6]	C	T	5.429e^-4	0.869	NON_SYNONYMOUS_CODING stops INTRON Gycbeta100B
2L	2134502	2L_2134502_SNP [dm3] 2L_2134502_SNP [dm6]	C	T	5.430e^-4	0.869	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17803228	3R_17803228_SNP [dm3] 3R_21977506_SNP [dm6]	T	C	5.433e^-4	0.869	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7212438	3L_7212438_SNP [dm3] 3L_7219338_SNP [dm6]	C	A	5.448e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5373904	X_5373904_SNP [dm3] X_5479871_SNP [dm6]	T	G	5.476e^-4	0.869	INTRON SPR
2L	5284813	2L_5284813_SNP [dm3] 2L_5284813_SNP [dm6]	C	G	5.478e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5663529	3R_5663529_SNP [dm3] 3R_9837807_SNP [dm6]	T	A	5.481e^-4	0.869	INTRON Teh1
2L	19813951	2L_19813951_SNP [dm3] 2L_19813951_SNP [dm6]	G	A	5.483e^-4	0.869	NON_SYNONYMOUS_CODING CG13962 INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6280221	3R_6280221_SNP [dm3] 3R_10454499_SNP [dm6]	T	C	5.484e^-4	0.869	INTERGENIC
2R	15684465	2R_15684465_SNP [dm3] 2R_19796960_SNP [dm6]	G	A	5.492e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Vial phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results