DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.753e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09686

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	2.8182	0.0932

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1050 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	15404856	X_15404856_SNP [dm3] X_15510823_SNP [dm6]	G	A	2.860e^-6	0.964	UTR_3_PRIME Gmap DOWNSTREAM Ac13E & 1 other
3L	3094909	3L_3094909_SNP [dm3] 3L_3094909_SNP [dm6]	A	T	3.161e^-6	0.964	UPSTREAM tRNA:CR32288 INTRON Cht7	TF binding site mE1_TFBS_cad
2R	15713621	2R_15713621_SNP [dm3] 2R_19826116_SNP [dm6]	T	C	6.208e^-6	0.964	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12169048	2L_12169048_SNP [dm3] 2L_12169048_SNP [dm6]	A	G	1.399e^-5	0.964	SYNONYMOUS_CODING CG31760 UTR_3_PRIME CG31760
2R	687086	2R_687086_SNP [dm3] 2R_4799581_SNP [dm6]	T	C	1.402e^-5	0.964	INTERGENIC	transposable element FlyBase
2R	687102	2R_687102_SNP [dm3] 2R_4799597_SNP [dm6]	T	C	1.402e^-5	0.964	INTERGENIC	transposable element FlyBase
3R	20449977	3R_20449977_SNP [dm3] 3R_24624255_SNP [dm6]	G	T	1.663e^-5	0.964	DOWNSTREAM mld INTRON Syx18
3R	20449992	3R_20449992_SNP [dm3] 3R_24624270_SNP [dm6]	G	A	1.663e^-5	0.964	DOWNSTREAM mld INTRON Syx18
3R	20450093	3R_20450093_SNP [dm3] 3R_24624371_SNP [dm6]	T	C	1.663e^-5	0.964	DOWNSTREAM mld INTRON Syx18
2R	9251733	2R_9251733_SNP [dm3] 2R_13364228_SNP [dm6]	C	G	2.153e^-5	0.964	INTERGENIC
3L	3001348	3L_3001348_SNP [dm3] 3L_3001348_SNP [dm6]	C	T	2.248e^-5	0.964	UPSTREAM FMRFaR INTERGENIC
2L	4329992	2L_4329992_SNP [dm3] 2L_4329992_SNP [dm6]	T	C	2.369e^-5	0.964	INTRON CG16857
3R	20450085	3R_20450085_SNP [dm3] 3R_24624363_SNP [dm6]	C	T	2.535e^-5	0.964	DOWNSTREAM mld INTRON Syx18
3R	20450078	3R_20450078_SNP [dm3] 3R_24624356_SNP [dm6]	A	C	3.114e^-5	0.964	DOWNSTREAM mld INTRON Syx18
3R	20450074	3R_20450074_SNP [dm3] 3R_24624352_SNP [dm6]	A	T	3.178e^-5	0.964	DOWNSTREAM mld INTRON Syx18
2L	16388493	2L_16388493_SNP [dm3] 2L_16388493_SNP [dm6]	T	A	3.280e^-5	0.964	INTERGENIC
3R	18820617	3R_18820617_SNP [dm3] 3R_22994895_SNP [dm6]	A	G	3.923e^-5	0.964	INTRON Nha2
2L	7384771	2L_7384771_SNP [dm3] 2L_7384771_SNP [dm6]	T	C	3.989e^-5	0.964	UTR_3_PRIME CG5149 DOWNSTREAM ninaC
X	14776837	X_14776837_SNP [dm3] X_14882804_SNP [dm6]	A	C	4.010e^-5	0.964	UPSTREAM CG45065 & 1 other INTRON Flo2
2L	19584118	2L_19584118_SNP [dm3] 2L_19584118_SNP [dm6]	G	C	4.368e^-5	0.964	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19584148	2L_19584148_SNP [dm3] 2L_19584148_SNP [dm6]	T	A	4.368e^-5	0.964	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	15404737	X_15404737_SNP [dm3] X_15510704_SNP [dm6]	T	C	4.372e^-5	0.964	UTR_3_PRIME Gmap DOWNSTREAM Ac13E
X	12940980	X_12940980_SNP [dm3] X_13046947_SNP [dm6]	C	T	4.725e^-5	0.964	SYNONYMOUS_CODING rad UTR_5_PRIME rad
2L	4325734	2L_4325734_SNP [dm3] 2L_4325734_SNP [dm6]	G	T	4.908e^-5	0.964	INTRON CG16857
2L	5555913	2L_5555913_SNP [dm3] 2L_5555913_SNP [dm6]	G	A	5.070e^-5	0.964	SYNONYMOUS_CODING GluRIIA DOWNSTREAM CG14017
2R	16620701	2R_16620701_SNP [dm3] 2R_20733196_SNP [dm6]	G	A	5.527e^-5	0.964	INTRON dpr
X	7364276	X_7364276_SNP [dm3] X_7470243_SNP [dm6]	G	T	5.653e^-5	0.964	INTERGENIC
2L	14534070	2L_14534070_SNP [dm3] 2L_14534070_SNP [dm6]	T	C	5.695e^-5	0.964	UPSTREAM CR44852 INTERGENIC
2L	9323557	2L_9323557_SNP [dm3] 2L_9323557_SNP [dm6]	A	T	5.707e^-5	0.964	INTERGENIC
2L	1446573	2L_1446573_SNP [dm3] 2L_1446573_SNP [dm6]	G	A	6.112e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9305185	2L_9305185_SNP [dm3] 2L_9305185_SNP [dm6]	A	G	6.433e^-5	0.964	UPSTREAM CR42844 INTERGENIC
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	6.556e^-5	0.964	INTRON ppk9
3L	3201257	3L_3201257_SNP [dm3] 3L_3201257_SNP [dm6]	G	A	6.720e^-5	0.964	SYNONYMOUS_CODING gry DOWNSTREAM CG32271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9958515	3R_9958515_SNP [dm3] 3R_14132793_SNP [dm6]	G	A	6.806e^-5	0.964	UPSTREAM CG14356 INTERGENIC
X	2772245	X_2772245_SNP [dm3] X_2878212_SNP [dm6]	C	T	6.972e^-5	0.964	INTRON kirre
3R	9958539	3R_9958539_SNP [dm3] 3R_14132817_SNP [dm6]	A	T	7.014e^-5	0.964	UPSTREAM CG14356 INTERGENIC
3L	11852039	3L_11852039_SNP [dm3] 3L_11858939_SNP [dm6]	C	G	7.021e^-5	0.964	INTRON CG44837
3L	11852114	3L_11852114_SNP [dm3] 3L_11859014_SNP [dm6]	C	T	7.021e^-5	0.964	INTRON CG44837
2R	9251683	2R_9251683_SNP [dm3] 2R_13364178_SNP [dm6]	C	G	7.172e^-5	0.964	INTERGENIC
2L	9305215	2L_9305215_SNP [dm3] 2L_9305215_SNP [dm6]	T	C	7.263e^-5	0.964	UPSTREAM CR42844 INTERGENIC
3L	4741339	3L_4741339_SNP [dm3] 3L_4741339_SNP [dm6]	A	G	7.329e^-5	0.964	INTRON RhoGEF64C
2L	5404538	2L_5404538_SNP [dm3] 2L_5404538_SNP [dm6]	C	T	7.352e^-5	0.964	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	4415803	2L_4415803_SNP [dm3] 2L_4415803_SNP [dm6]	G	A	7.648e^-5	0.964	INTRON CG15431
2L	19722149	2L_19722149_SNP [dm3] 2L_19722149_SNP [dm6]	A	C	7.816e^-5	0.964	INTRON Lar
3R	17015574	3R_17015574_SNP [dm3] 3R_21189852_SNP [dm6]	G	T	7.892e^-5	0.964	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	18545016	2R_18545016_SNP [dm3] 2R_22657511_SNP [dm6]	G	T	8.003e^-5	0.964	UPSTREAM CG13510 & 4 others INTERGENIC
X	4919549	X_4919549_SNP [dm3] X_5025516_SNP [dm6]	T	C	8.006e^-5	0.964	INTRON CR44833
X	3479817	X_3479817_SNP [dm3] X_3585784_SNP [dm6]	T	G	8.071e^-5	0.964	INTRON AstA-R1
2R	9251741	2R_9251741_SNP [dm3] 2R_13364236_SNP [dm6]	G	A	8.183e^-5	0.964	INTERGENIC
X	7364280	X_7364280_SNP [dm3] X_7470247_SNP [dm6]	C	T	8.285e^-5	0.964	INTERGENIC
2L	4415801	2L_4415801_SNP [dm3] 2L_4415801_SNP [dm6]	T	C	8.313e^-5	0.964	INTRON CG15431
2L	14531330	2L_14531330_SNP [dm3] 2L_14531330_SNP [dm6]	G	A	8.776e^-5	0.964	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15873047	X_15873047_SNP [dm3] X_15979014_SNP [dm6]	T	C	9.005e^-5	0.964	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20449938	3R_20449938_SNP [dm3] 3R_24624216_SNP [dm6]	G	T	9.078e^-5	0.964	DOWNSTREAM mld INTRON Syx18
3L	20941290	3L_20941290_SNP [dm3] 3L_20948190_SNP [dm6]	T	C	9.156e^-5	0.964	INTRON fng
2R	704185	2R_704185_SNP [dm3] 2R_4816680_SNP [dm6]	G	A	9.168e^-5	0.964	UTR_3_PRIME CG17528 DOWNSTREAM CG17528	TF binding site mE1_TFBS_cad
3R	25287571	3R_25287571_SNP [dm3] 3R_29461849_SNP [dm6]	G	T	9.254e^-5	0.964	UTR_5_PRIME Ptp99A UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
X	6005458	X_6005458_SNP [dm3] X_6111425_SNP [dm6]	A	G	9.601e^-5	0.964	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12354158	3R_12354158_SNP [dm3] 3R_16528436_SNP [dm6]	A	C	9.858e^-5	0.964	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	12769080	X_12769080_INS [dm3] X_12875047_INS [dm6]	C	CT	1.002e^-4	0.964	INTRON Pde9
2L	8010187	2L_8010187_SNP [dm3] 2L_8010187_SNP [dm6]	C	A	1.014e^-4	0.964	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4963071	2L_4963071_SNP [dm3] 2L_4963071_SNP [dm6]	T	A	1.050e^-4	0.964	SYNONYMOUS_CODING CG34124 DOWNSTREAM CR43824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15751352	2R_15751352_SNP [dm3] 2R_19863847_SNP [dm6]	A	C	1.054e^-4	0.964	UPSTREAM Obp56i INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15751361	2R_15751361_SNP [dm3] 2R_19863856_SNP [dm6]	T	G	1.054e^-4	0.964	UPSTREAM Obp56i INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2892875	3L_2892875_SNP [dm3] 3L_2892875_SNP [dm6]	A	G	1.069e^-4	0.964	UPSTREAM spz5 INTERGENIC
2L	7331995	2L_7331995_SNP [dm3] 2L_7331995_SNP [dm6]	C	G	1.095e^-4	0.964	INTERGENIC
2L	12445651	2L_12445651_SNP [dm3] 2L_12445651_SNP [dm6]	T	C	1.125e^-4	0.964	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	20351462	2L_20351462_SNP [dm3] 2L_20351462_SNP [dm6]	G	A	1.129e^-4	0.964	INTRON RtGEF
3L	3094603	3L_3094603_SNP [dm3] 3L_3094603_SNP [dm6]	T	C	1.130e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
X	14161154	X_14161154_INS [dm3] X_14267121_INS [dm6]	A	AAA	1.130e^-4	0.964	UPSTREAM CG13404 INTRON na
X	14161159	X_14161159_SNP [dm3] X_14267126_SNP [dm6]	G	T	1.130e^-4	0.964	UPSTREAM CG13404 INTRON na
X	14161165	X_14161165_SNP [dm3] X_14267132_SNP [dm6]	C	A	1.130e^-4	0.964	UPSTREAM CG13404 INTRON na
2L	12448794	2L_12448794_DEL [dm3] 2L_12448794_DEL [dm6]	CA	C	1.148e^-4	0.964	UPSTREAM CG5421 INTRON Oatp33Eb
3L	1412812	3L_1412812_SNP [dm3] 3L_1412812_SNP [dm6]	G	A	1.153e^-4	0.964	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
X	3481263	X_3481263_SNP [dm3] X_3587230_SNP [dm6]	T	G	1.161e^-4	0.964	INTRON AstA-R1
2R	12620293	2R_12620293_SNP [dm3] 2R_16732788_SNP [dm6]	T	C	1.187e^-4	0.964	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_sna
X	7130285	X_7130285_SNP [dm3] X_7236252_SNP [dm6]	G	A	1.193e^-4	0.964	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19584045	2L_19584045_SNP [dm3] 2L_19584045_SNP [dm6]	T	C	1.197e^-4	0.964	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12596799	3L_12596799_SNP [dm3] 3L_12603699_SNP [dm6]	T	C	1.213e^-4	0.964	INTERGENIC
2R	10584445	2R_10584445_SNP [dm3] 2R_14696940_SNP [dm6]	T	C	1.216e^-4	0.964	INTRON mspo
2R	10584452	2R_10584452_SNP [dm3] 2R_14696947_SNP [dm6]	T	C	1.216e^-4	0.964	INTRON mspo
3L	2416414	3L_2416414_SNP [dm3] 3L_2416414_SNP [dm6]	C	T	1.224e^-4	0.964	INTRON CG45186
2L	16371309	2L_16371309_SNP [dm3] 2L_16371309_SNP [dm6]	C	T	1.226e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	11213837	X_11213837_SNP [dm3] X_11319804_SNP [dm6]	G	A	1.234e^-4	0.964	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	16620703	2R_16620703_SNP [dm3] 2R_20733198_SNP [dm6]	T	C	1.238e^-4	0.964	INTRON dpr
X	1009875	X_1009875_SNP [dm3] X_1115842_SNP [dm6]	C	T	1.240e^-4	0.964	INTRON CG3655	TF binding site mE1_TFBS_HSA
3L	2568819	3L_2568819_SNP [dm3] 3L_2568819_SNP [dm6]	C	A	1.285e^-4	0.964	INTRON msn
3L	2568825	3L_2568825_SNP [dm3] 3L_2568825_SNP [dm6]	G	A	1.285e^-4	0.964	INTRON msn
2R	18538526	2R_18538526_SNP [dm3] 2R_22651021_SNP [dm6]	C	T	1.310e^-4	0.964	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20399476	X_20399476_SNP [dm3] X_20528449_SNP [dm6]	G	T	1.318e^-4	0.964	DOWNSTREAM CG42579 INTERGENIC
2L	13804056	2L_13804056_SNP [dm3] 2L_13804056_SNP [dm6]	T	G	1.334e^-4	0.964	INTRON CAH1
3L	10900191	3L_10900191_SNP [dm3] 3L_10907091_SNP [dm6]	T	C	1.344e^-4	0.964	INTERGENIC
3L	10900198	3L_10900198_SNP [dm3] 3L_10907098_SNP [dm6]	T	A	1.344e^-4	0.964	INTERGENIC
3L	2409971	3L_2409971_SNP [dm3] 3L_2409971_SNP [dm6]	A	T	1.363e^-4	0.964	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	2699584	3L_2699584_SNP [dm3] 3L_2699584_SNP [dm6]	A	C	1.384e^-4	0.964	INTRON Fife
2L	7341264	2L_7341264_SNP [dm3] 2L_7341264_SNP [dm6]	G	T	1.386e^-4	0.964	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	18108932	3L_18108932_SNP [dm3] 3L_18115832_SNP [dm6]	A	T	1.390e^-4	0.964	UTR_3_PRIME CG32195 INTRON CG7341
X	12512200	X_12512200_SNP [dm3] X_12618167_SNP [dm6]	G	A	1.391e^-4	0.964	INTRON CG11085	TF binding site mE1_TFBS_inv
3L	7245077	3L_7245077_SNP [dm3] 3L_7251977_SNP [dm6]	T	C	1.396e^-4	0.964	NON_SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site mE1_TFBS_chinmo
2R	16620410	2R_16620410_SNP [dm3] 2R_20732905_SNP [dm6]	T	A	1.403e^-4	0.964	INTRON dpr
2L	1446578	2L_1446578_SNP [dm3] 2L_1446578_SNP [dm6]	A	G	1.411e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7363782	X_7363782_SNP [dm3] X_7469749_SNP [dm6]	G	C	1.422e^-4	0.964	INTERGENIC
X	14161179	X_14161179_SNP [dm3] X_14267146_SNP [dm6]	T	C	1.424e^-4	0.964	UPSTREAM CG13404 INTRON na
2L	7598486	2L_7598486_SNP [dm3] 2L_7598486_SNP [dm6]	C	T	1.428e^-4	0.964	INTERGENIC
3L	9735631	3L_9735631_SNP [dm3] 3L_9742531_SNP [dm6]	T	A	1.445e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
2R	13221645	2R_13221645_SNP [dm3] 2R_17334140_SNP [dm6]	A	C	1.455e^-4	0.964	INTRON mbl
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	1.455e^-4	0.964	INTRON mbl
X	15405062	X_15405062_SNP [dm3] X_15511029_SNP [dm6]	T	A	1.459e^-4	0.964	UTR_3_PRIME Gmap & 1 other DOWNSTREAM Ac13E & 1 other
3R	18820564	3R_18820564_SNP [dm3] 3R_22994842_SNP [dm6]	C	T	1.476e^-4	0.964	INTRON Nha2
3L	4388017	3L_4388017_SNP [dm3] 3L_4388017_SNP [dm6]	T	A	1.476e^-4	0.964	INTRON slow
3L	2568865	3L_2568865_SNP [dm3] 3L_2568865_SNP [dm6]	T	G	1.477e^-4	0.964	INTRON msn
3R	10430198	3R_10430198_SNP [dm3] 3R_14604476_SNP [dm6]	T	C	1.535e^-4	0.964	SYNONYMOUS_CODING stumps UTR_5_PRIME stumps
3L	8525089	3L_8525089_SNP [dm3] 3L_8531989_SNP [dm6]	A	G	1.554e^-4	0.964	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16520522	2L_16520522_SNP [dm3] 2L_16520522_SNP [dm6]	T	C	1.571e^-4	0.964	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	4415873	2L_4415873_SNP [dm3] 2L_4415873_SNP [dm6]	C	T	1.593e^-4	0.964	INTRON CG15431
3L	13489758	3L_13489758_SNP [dm3] 3L_13496658_SNP [dm6]	G	A	1.594e^-4	0.964	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8546725	3L_8546725_SNP [dm3] 3L_8553625_SNP [dm6]	A	G	1.615e^-4	0.964	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9735720	3L_9735720_SNP [dm3] 3L_9742620_SNP [dm6]	C	T	1.623e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16627735	2L_16627735_SNP [dm3] 2L_16627735_SNP [dm6]	A	G	1.635e^-4	0.964	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	17359263	2L_17359263_SNP [dm3] 2L_17359263_SNP [dm6]	G	C	1.650e^-4	0.964	INTERGENIC
X	2380942	X_2380942_SNP [dm3] X_2486909_SNP [dm6]	T	A	1.657e^-4	0.964	INTRON trol
2L	4416500	2L_4416500_SNP [dm3] 2L_4416500_SNP [dm6]	G	C	1.660e^-4	0.964	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	12448801	2L_12448801_SNP [dm3] 2L_12448801_SNP [dm6]	A	C	1.664e^-4	0.964	SPLICE_SITE_REGION Oatp33Eb UPSTREAM CG5421 INTRON Oatp33Eb
2R	4115479	2R_4115479_SNP [dm3] 2R_8227974_SNP [dm6]	G	A	1.680e^-4	0.964	DOWNSTREAM CG34217 & 1 other INTERGENIC
2R	11610819	2R_11610819_SNP [dm3] 2R_15723314_SNP [dm6]	T	C	1.698e^-4	0.964	INTERGENIC
3R	22532257	3R_22532257_INS [dm3] 3R_26706535_INS [dm6]	T	TCT	1.707e^-4	0.964	INTRON amon
2L	17533066	2L_17533066_SNP [dm3] 2L_17533066_SNP [dm6]	G	C	1.709e^-4	0.964	UPSTREAM CG15145 INTERGENIC
2R	683404	2R_683404_SNP [dm3] 2R_4795899_SNP [dm6]	A	G	1.712e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	2307286	2L_2307286_SNP [dm3] 2L_2307286_SNP [dm6]	C	T	1.720e^-4	0.964	UPSTREAM CG16995 INTERGENIC
3L	12594789	3L_12594789_SNP [dm3] 3L_12601689_SNP [dm6]	C	A	1.732e^-4	0.964	INTERGENIC
2R	6414386	2R_6414386_SNP [dm3] 2R_10526881_SNP [dm6]	T	C	1.789e^-4	0.964	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10597880	2R_10597880_SNP [dm3] 2R_14710375_SNP [dm6]	G	A	1.794e^-4	0.964	INTRON mspo
X	8767487	X_8767487_INS [dm3] X_8873454_INS [dm6]	C	CC	1.814e^-4	0.964	UTR_3_PRIME Moe DOWNSTREAM Moe & 1 other
X	7363742	X_7363742_DEL [dm3] X_7469709_DEL [dm6]	AA	A	1.818e^-4	0.964	INTERGENIC
2R	686089	2R_686089_SNP [dm3] 2R_4798584_SNP [dm6]	G	C	1.838e^-4	0.964	INTERGENIC	transposable element FlyBase
X	19437067	X_19437067_SNP [dm3] X_19543034_SNP [dm6]	T	G	1.855e^-4	0.964	INTRON CG32532	TF binding site BDTNP1_TFBS_da
X	5230387	X_5230387_SNP [dm3] X_5336354_SNP [dm6]	G	T	1.871e^-4	0.964	INTERGENIC
2R	16295977	2R_16295977_SNP [dm3] 2R_20408472_SNP [dm6]	A	G	1.881e^-4	0.964	INTERGENIC
X	13801032	X_13801032_DEL [dm3] X_13906999_DEL [dm6]	CGCACACAC	C	1.888e^-4	0.964	INTRON mamo
2R	6790585	2R_6790585_INS [dm3] 2R_10903080_INS [dm6]	T	TT	1.888e^-4	0.964	UPSTREAM CG12943 INTERGENIC
2L	21125964	2L_21125964_DEL [dm3] 2L_21125964_DEL [dm6]	TG	T	1.896e^-4	0.964	INTRON Nhe2
3L	4740639	3L_4740639_SNP [dm3] 3L_4740639_SNP [dm6]	T	C	1.950e^-4	0.964	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3L	12713014	3L_12713014_SNP [dm3] 3L_12719914_SNP [dm6]	C	T	1.960e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	1232264	3L_1232264_SNP [dm3] 3L_1232264_SNP [dm6]	C	T	1.974e^-4	0.964	SYNONYMOUS_CODING mwh UPSTREAM CG33965	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17550155	2L_17550155_DEL [dm3] 2L_17550155_DEL [dm6]	CC	C	1.976e^-4	0.964	INTERGENIC
2R	20168183	2R_20168183_SNP [dm3] 2R_24280660_SNP [dm6]	G	A	2.010e^-4	0.964	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	684921	2R_684921_SNP [dm3] 2R_4797416_SNP [dm6]	A	C	2.014e^-4	0.964	INTERGENIC	transposable element FlyBase
2R	686675	2R_686675_SNP [dm3] 2R_4799170_SNP [dm6]	G	C	2.014e^-4	0.964	INTERGENIC	transposable element FlyBase
3L	15270658	3L_15270658_SNP [dm3] 3L_15277558_SNP [dm6]	A	C	2.018e^-4	0.964	INTERGENIC
3L	3634196	3L_3634196_SNP [dm3] 3L_3634196_SNP [dm6]	A	T	2.050e^-4	0.964	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3634200	3L_3634200_SNP [dm3] 3L_3634200_SNP [dm6]	C	T	2.050e^-4	0.964	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3634203	3L_3634203_SNP [dm3] 3L_3634203_SNP [dm6]	A	T	2.050e^-4	0.964	INTRON dar1	TF binding site mE1_TFBS_HSA
3L	3634208	3L_3634208_SNP [dm3] 3L_3634208_SNP [dm6]	A	T	2.050e^-4	0.964	INTRON dar1	TF binding site mE1_TFBS_HSA
3L	3634233	3L_3634233_SNP [dm3] 3L_3634233_SNP [dm6]	G	A	2.050e^-4	0.964	INTRON dar1	TF binding site mE1_TFBS_HSA
3R	12414808	3R_12414808_SNP [dm3] 3R_16589086_SNP [dm6]	C	T	2.054e^-4	0.964	INTERGENIC
3L	6060844	3L_6060844_SNP [dm3] 3L_6067744_SNP [dm6]	A	G	2.062e^-4	0.964	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	6382320	X_6382320_SNP [dm3] X_6488287_SNP [dm6]	G	C	2.078e^-4	0.964	INTRON CG42340
2L	8026153	2L_8026153_SNP [dm3] 2L_8026153_SNP [dm6]	A	T	2.081e^-4	0.964	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
3R	20450121	3R_20450121_SNP [dm3] 3R_24624399_SNP [dm6]	A	T	2.092e^-4	0.964	DOWNSTREAM mld INTRON Syx18
2R	703047	2R_703047_SNP [dm3] 2R_4815542_SNP [dm6]	T	G	2.107e^-4	0.964	UTR_3_PRIME CG17528
X	2413921	X_2413921_SNP [dm3] X_2519888_SNP [dm6]	C	G	2.112e^-4	0.964	INTRON trol
3L	13848729	3L_13848729_SNP [dm3] 3L_13855629_SNP [dm6]	A	G	2.119e^-4	0.964	SYNONYMOUS_CODING Hml
2L	8205979	2L_8205979_SNP [dm3] 2L_8205979_SNP [dm6]	A	G	2.144e^-4	0.964	UPSTREAM SLC5A11 & 2 others DOWNSTREAM CR44119 EXON CR44121	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17589981	2L_17589981_SNP [dm3] 2L_17589981_SNP [dm6]	C	A	2.174e^-4	0.964	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14485485	3L_14485485_SNP [dm3] 3L_14492385_SNP [dm6]	C	T	2.196e^-4	0.964	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	17533804	2L_17533804_SNP [dm3] 2L_17533804_SNP [dm6]	G	A	2.200e^-4	0.964	INTERGENIC
2R	18538522	2R_18538522_INS [dm3] 2R_22651017_INS [dm6]	C	CT	2.202e^-4	0.964	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12266285	X_12266285_DEL [dm3] X_12372252_DEL [dm6]	TC	A	2.254e^-4	0.964	UPSTREAM CG2577 INTERGENIC
2L	17533855	2L_17533855_SNP [dm3] 2L_17533855_SNP [dm6]	A	G	2.257e^-4	0.964	INTERGENIC
X	13505129	X_13505129_SNP [dm3] X_13611096_SNP [dm6]	C	T	2.267e^-4	0.964	SYNONYMOUS_CODING Ndc80	TF binding site mE1_TFBS_sens
2L	6269756	2L_6269756_SNP [dm3] 2L_6269756_SNP [dm6]	T	C	2.270e^-4	0.964	INTRON Ddr
2L	4416492	2L_4416492_SNP [dm3] 2L_4416492_SNP [dm6]	A	G	2.276e^-4	0.964	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	681931	2R_681931_SNP [dm3] 2R_4794426_SNP [dm6]	A	T	2.286e^-4	0.964	INTERGENIC	transposable element FlyBase
2L	16977532	2L_16977532_INS [dm3] 2L_16977532_INS [dm6]	A	ATATTATA	2.292e^-4	0.964	INTRON beat-IIIb
2L	7516721	2L_7516721_SNP [dm3] 2L_7516721_SNP [dm6]	T	G	2.296e^-4	0.964	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	682030	2R_682030_SNP [dm3] 2R_4794525_SNP [dm6]	A	G	2.304e^-4	0.964	INTERGENIC	transposable element FlyBase
2R	17554749	2R_17554749_SNP [dm3] 2R_21667244_SNP [dm6]	T	C	2.307e^-4	0.964	SYNONYMOUS_CODING CG42365 DOWNSTREAM CG9865 & 4 others	TF binding site mE1_TFBS_cad
3L	605583	3L_605583_SNP [dm3] 3L_605583_SNP [dm6]	C	T	2.309e^-4	0.964	SYNONYMOUS_CODING Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4935192	2L_4935192_SNP [dm3] 2L_4935192_SNP [dm6]	A	T	2.319e^-4	0.964	SPLICE_SITE_REGION hoe2 INTRON hoe2
3L	8634513	3L_8634513_SNP [dm3] 3L_8641413_SNP [dm6]	A	G	2.331e^-4	0.964	INTRON Cpr66D
3L	9735708	3L_9735708_SNP [dm3] 3L_9742608_SNP [dm6]	A	T	2.341e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12910735	3L_12910735_SNP [dm3] 3L_12917635_SNP [dm6]	G	C	2.344e^-4	0.964	INTERGENIC
2L	16118107	2L_16118107_SNP [dm3] 2L_16118107_SNP [dm6]	T	C	2.347e^-4	0.964	INTERGENIC
2L	3847006	2L_3847006_SNP [dm3] 2L_3847006_SNP [dm6]	G	C	2.351e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12415100	3R_12415100_SNP [dm3] 3R_16589378_SNP [dm6]	A	C	2.371e^-4	0.964	INTERGENIC
X	8725310	X_8725310_SNP [dm3] X_8831277_SNP [dm6]	C	T	2.397e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7518071	2L_7518071_SNP [dm3] 2L_7518071_SNP [dm6]	A	G	2.403e^-4	0.964	INTRON RapGAP1
3L	6224533	3L_6224533_SNP [dm3] 3L_6231433_SNP [dm6]	C	A	2.432e^-4	0.964	DOWNSTREAM CG13299 INTERGENIC
3R	22992929	3R_22992929_SNP [dm3] 3R_27167207_SNP [dm6]	G	C	2.432e^-4	0.964	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
2R	10589223	2R_10589223_SNP [dm3] 2R_14701718_SNP [dm6]	A	C	2.457e^-4	0.964	INTRON mspo
2L	16390970	2L_16390970_SNP [dm3] 2L_16390970_SNP [dm6]	G	C	2.458e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	14667206	3L_14667206_SNP [dm3] 3L_14674106_SNP [dm6]	C	T	2.501e^-4	0.964	UPSTREAM tRNA:M3:70Fb & 1 other DOWNSTREAM CG4914 INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	14669173	3L_14669173_SNP [dm3] 3L_14676073_SNP [dm6]	A	C	2.501e^-4	0.964	INTRON ome & 1 other
2L	17361464	2L_17361464_SNP [dm3] 2L_17361464_SNP [dm6]	A	G	2.506e^-4	0.964	EXON CR44346
2L	12332093	2L_12332093_SNP [dm3] 2L_12332093_SNP [dm6]	C	T	2.507e^-4	0.964	INTERGENIC
3L	12307207	3L_12307207_SNP [dm3] 3L_12314107_SNP [dm6]	G	T	2.515e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs
2R	678468	2R_678468_SNP [dm3] 2R_4790963_SNP [dm6]	G	A	2.518e^-4	0.964	INTERGENIC	transposable element FlyBase
2L	17589824	2L_17589824_INS [dm3] 2L_17589824_INS [dm6]	A	AA	2.526e^-4	0.964	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4416389	2L_4416389_SNP [dm3] 2L_4416389_SNP [dm6]	G	A	2.532e^-4	0.964	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	9735650	3L_9735650_SNP [dm3] 3L_9742550_SNP [dm6]	G	T	2.541e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3R	15521741	3R_15521741_SNP [dm3] 3R_19696019_SNP [dm6]	G	A	2.548e^-4	0.964	INTRON Naam
2R	13221603	2R_13221603_SNP [dm3] 2R_17334098_SNP [dm6]	G	A	2.548e^-4	0.964	INTRON mbl
X	10621417	X_10621417_SNP [dm3] X_10727384_SNP [dm6]	A	C	2.553e^-4	0.964	INTRON CG32676
3R	17774256	3R_17774256_SNP [dm3] 3R_21948534_SNP [dm6]	G	A	2.569e^-4	0.964	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
X	14781668	X_14781668_SNP [dm3] X_14887635_SNP [dm6]	T	A	2.571e^-4	0.964	SYNONYMOUS_CODING CG9514 INTRON Flo2
3L	9058350	3L_9058350_SNP [dm3] 3L_9065250_SNP [dm6]	G	A	2.584e^-4	0.964	INTRON Argk	TF binding site mE1_TFBS_bab1
3L	16014606	3L_16014606_SNP [dm3] 3L_16021506_SNP [dm6]	T	A	2.603e^-4	0.964	EXON CR43949	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	2590417	X_2590417_SNP [dm3] X_2696384_SNP [dm6]	A	G	2.603e^-4	0.964	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17548563	2L_17548563_SNP [dm3] 2L_17548563_SNP [dm6]	T	A	2.607e^-4	0.964	DOWNSTREAM CR45697 INTERGENIC
2R	13216927	2R_13216927_SNP [dm3] 2R_17329422_SNP [dm6]	A	G	2.620e^-4	0.964	INTRON mbl
2L	16972340	2L_16972340_SNP [dm3] 2L_16972340_SNP [dm6]	C	A	2.621e^-4	0.964	UPSTREAM beat-IIIb INTERGENIC
2R	18545010	2R_18545010_SNP [dm3] 2R_22657505_SNP [dm6]	G	A	2.621e^-4	0.964	UPSTREAM CG13510 & 4 others INTERGENIC
2L	12328436	2L_12328436_SNP [dm3] 2L_12328436_SNP [dm6]	C	T	2.631e^-4	0.964	INTERGENIC
3L	3166356	3L_3166356_SNP [dm3] 3L_3166356_SNP [dm6]	A	G	2.649e^-4	0.964	UPSTREAM Asciz INTRON CG32280	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16737451	X_16737451_SNP [dm3] X_16843418_SNP [dm6]	C	G	2.673e^-4	0.964	SYNONYMOUS_CODING RSG7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14915745	3R_14915745_SNP [dm3] 3R_19090023_SNP [dm6]	C	T	2.673e^-4	0.964	INTRON cdi
2L	17589980	2L_17589980_SNP [dm3] 2L_17589980_SNP [dm6]	G	A	2.685e^-4	0.964	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17590032	2L_17590032_SNP [dm3] 2L_17590032_SNP [dm6]	A	G	2.685e^-4	0.964	START_GAINED Oli UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2812256	2L_2812256_SNP [dm3] 2L_2812256_SNP [dm6]	T	C	2.692e^-4	0.964	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1
3L	7281092	3L_7281092_SNP [dm3] 3L_7287992_SNP [dm6]	G	T	2.744e^-4	0.964	INTRON unc-13-4A
X	14161209	X_14161209_DEL [dm3] X_14267176_DEL [dm6]	TGA	T	2.773e^-4	0.964	UPSTREAM CG13404 INTRON na
3L	20949800	3L_20949800_SNP [dm3] 3L_20956700_SNP [dm6]	A	C	2.774e^-4	0.964	SYNONYMOUS_CODING Sems UPSTREAM CG10588
2R	8789006	2R_8789006_SNP [dm3] 2R_12901501_SNP [dm6]	T	A	2.797e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8789033	2R_8789033_SNP [dm3] 2R_12901528_SNP [dm6]	C	A	2.797e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4791313	3L_4791313_SNP [dm3] 3L_4791313_SNP [dm6]	G	T	2.802e^-4	0.964	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	4418410	2L_4418410_SNP [dm3] 2L_4418410_SNP [dm6]	T	A	2.815e^-4	0.964	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	4419374	2L_4419374_DEL [dm3] 2L_4419374_DEL [dm6]	TATGTTTGTT	T	2.815e^-4	0.964	UPSTREAM tRNA:CR31963 INTRON CG15431
2L	4419749	2L_4419749_SNP [dm3] 2L_4419749_SNP [dm6]	A	C	2.815e^-4	0.964	UPSTREAM tRNA:CR31963 INTRON CG15431
2L	4420410	2L_4420410_SNP [dm3] 2L_4420410_SNP [dm6]	C	G	2.815e^-4	0.964	INTRON CG15431
2R	20103216	2R_20103216_SNP [dm3] 2R_24215693_SNP [dm6]	C	A	2.834e^-4	0.964	INTRON CG30419
3L	6335460	3L_6335460_SNP [dm3] 3L_6342360_SNP [dm6]	A	C	2.839e^-4	0.964	INTRON CG13300	TF binding site mE1_TFBS_sens
3R	15002677	3R_15002677_SNP [dm3] 3R_19176955_SNP [dm6]	A	C	2.870e^-4	0.964	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15002682	3R_15002682_SNP [dm3] 3R_19176960_SNP [dm6]	A	C	2.870e^-4	0.964	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15002689	3R_15002689_SNP [dm3] 3R_19176967_SNP [dm6]	A	C	2.870e^-4	0.964	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4416302	2L_4416302_INS [dm3] 2L_4416302_INS [dm6]	A	ATGTCATC	2.881e^-4	0.964	INTRON CG15431
2R	12531498	2R_12531498_SNP [dm3] 2R_16643993_SNP [dm6]	T	C	2.896e^-4	0.964	INTRON gprs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8057368	2L_8057368_SNP [dm3] 2L_8057368_SNP [dm6]	A	G	2.909e^-4	0.964	SYNONYMOUS_CODING poe
X	5230468	X_5230468_SNP [dm3] X_5336435_SNP [dm6]	T	A	2.911e^-4	0.964	INTERGENIC
3L	10931039	3L_10931039_SNP [dm3] 3L_10937939_SNP [dm6]	C	T	2.917e^-4	0.964	INTERGENIC
2R	16620412	2R_16620412_SNP [dm3] 2R_20732907_SNP [dm6]	T	C	2.930e^-4	0.964	INTRON dpr
X	4249093	X_4249093_SNP [dm3] X_4355060_SNP [dm6]	C	T	2.949e^-4	0.964	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4249525	X_4249525_SNP [dm3] X_4355492_SNP [dm6]	A	G	2.949e^-4	0.964	INTRON norpA	TF binding site mE1_TFBS_HSA
X	4249539	X_4249539_SNP [dm3] X_4355506_SNP [dm6]	C	A	2.949e^-4	0.964	INTRON norpA	TF binding site mE1_TFBS_HSA
2R	678047	2R_678047_INS [dm3] 2R_4790542_INS [dm6]	T	TAAATAAATATCTACCACAA...	2.958e^-4	0.964	INTERGENIC	transposable element FlyBase
3L	18109097	3L_18109097_SNP [dm3] 3L_18115997_SNP [dm6]	C	T	2.964e^-4	0.964	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2R	12514260	2R_12514260_SNP [dm3] 2R_16626755_SNP [dm6]	G	A	2.964e^-4	0.964	UTR_3_PRIME Alk
3L	16316818	3L_16316818_DEL [dm3] 3L_16323718_DEL [dm6]	AA	A	2.964e^-4	0.964	UTR_5_PRIME CG13059
X	15534371	X_15534371_SNP [dm3] X_15640338_SNP [dm6]	T	A	2.980e^-4	0.964	INTERGENIC
3L	12630024	3L_12630024_INS [dm3] 3L_12636924_INS [dm6]	T	TT	2.996e^-4	0.964	INTRON CR32111
2L	17522472	2L_17522472_SNP [dm3] 2L_17522472_SNP [dm6]	C	G	3.011e^-4	0.964	SYNONYMOUS_CODING CG15143 INTRON Dhc36C	TF binding site mE1_TFBS_sens
2L	11951653	2L_11951653_INS [dm3] 2L_11951653_INS [dm6]	T	TT	3.030e^-4	0.964	DOWNSTREAM CR43314 INTERGENIC
2R	9804750	2R_9804750_SNP [dm3] 2R_13917245_SNP [dm6]	A	T	3.037e^-4	0.964	INTRON shot
2L	8206532	2L_8206532_SNP [dm3] 2L_8206532_SNP [dm6]	A	G	3.043e^-4	0.964	NON_SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8206542	2L_8206542_SNP [dm3] 2L_8206542_SNP [dm6]	T	C	3.043e^-4	0.964	SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16152890	2R_16152890_SNP [dm3] 2R_20265385_SNP [dm6]	T	C	3.110e^-4	0.964	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812 DOWNSTREAM RpS18	TF binding site mE1_TFBS_sens
2L	1712847	2L_1712847_SNP [dm3] 2L_1712847_SNP [dm6]	G	A	3.163e^-4	0.964	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
3R	23630300	3R_23630300_SNP [dm3] 3R_27804578_SNP [dm6]	C	G	3.164e^-4	0.964	INTRON CG34353
2R	14776561	2R_14776561_SNP [dm3] 2R_18889056_SNP [dm6]	T	C	3.185e^-4	0.964	INTRON sano
3R	25497880	3R_25497880_SNP [dm3] 3R_29672158_SNP [dm6]	T	C	3.195e^-4	0.964	SYNONYMOUS_CODING Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	7752295	2R_7752295_SNP [dm3] 2R_11864790_SNP [dm6]	C	A	3.261e^-4	0.964	UTR_3_PRIME CG42531 DOWNSTREAM Damm
3R	14610024	3R_14610024_SNP [dm3] 3R_18784302_SNP [dm6]	G	C	3.289e^-4	0.964	INTRON CG7720
3L	8562714	3L_8562714_SNP [dm3] 3L_8569614_SNP [dm6]	G	T	3.298e^-4	0.964	INTRON rhea EXON CR43910	TF binding site mE1_TFBS_HSA
2L	17533618	2L_17533618_SNP [dm3] 2L_17533618_SNP [dm6]	C	A	3.299e^-4	0.964	INTERGENIC
3R	21352221	3R_21352221_SNP [dm3] 3R_25526499_SNP [dm6]	G	C	3.306e^-4	0.964	INTRON msi
2R	20471472	2R_20471472_SNP [dm3] 2R_24583949_SNP [dm6]	G	T	3.308e^-4	0.964	INTRON pio
X	16737430	X_16737430_SNP [dm3] X_16843397_SNP [dm6]	A	G	3.313e^-4	0.964	SYNONYMOUS_CODING RSG7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2568827	3L_2568827_SNP [dm3] 3L_2568827_SNP [dm6]	G	A	3.330e^-4	0.964	INTRON msn
3L	1179611	3L_1179611_SNP [dm3] 3L_1179611_SNP [dm6]	C	T	3.336e^-4	0.964	INTERGENIC
3R	15002468	3R_15002468_SNP [dm3] 3R_19176746_SNP [dm6]	T	C	3.337e^-4	0.964	UPSTREAM CG14282 INTERGENIC
2R	3617477	2R_3617477_SNP [dm3] 2R_7729972_SNP [dm6]	C	G	3.354e^-4	0.964	INTRON CG18812
3L	1907533	3L_1907533_SNP [dm3] 3L_1907533_SNP [dm6]	T	A	3.363e^-4	0.964	INTRON CG1887
2R	7029733	2R_7029733_DEL [dm3] 2R_11142228_DEL [dm6]	ATG	A	3.375e^-4	0.964	INTRON CG13229
3L	10934361	3L_10934361_SNP [dm3] 3L_10941261_SNP [dm6]	G	A	3.387e^-4	0.964	INTERGENIC
2L	4032924	2L_4032924_SNP [dm3] 2L_4032924_SNP [dm6]	G	T	3.419e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	14218400	X_14218400_SNP [dm3] X_14324367_SNP [dm6]	A	G	3.424e^-4	0.964	INTRON dpr8
3R	21378577	3R_21378577_SNP [dm3] 3R_25552855_SNP [dm6]	T	C	3.440e^-4	0.964	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15967637	X_15967637_SNP [dm3] X_16073604_SNP [dm6]	A	C	3.450e^-4	0.964	UPSTREAM Nipsnap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3569803	2R_3569803_SNP [dm3] 2R_7682298_SNP [dm6]	T	G	3.452e^-4	0.964	UPSTREAM CG1399 INTRON CG1399
3L	4673014	3L_4673014_SNP [dm3] 3L_4673014_SNP [dm6]	G	T	3.454e^-4	0.964	INTRON axo
3R	20734918	3R_20734918_SNP [dm3] 3R_24909196_SNP [dm6]	T	G	3.464e^-4	0.964	INTERGENIC
X	3632630	X_3632630_SNP [dm3] X_3738597_SNP [dm6]	G	C	3.465e^-4	0.964	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3095451	3L_3095451_SNP [dm3] 3L_3095451_SNP [dm6]	G	T	3.468e^-4	0.964	UPSTREAM tRNA:CR32288 & 2 others INTRON Cht7
3R	5190980	3R_5190980_SNP [dm3] 3R_9365258_SNP [dm6]	A	G	3.475e^-4	0.964	UPSTREAM CG8129 DOWNSTREAM CG18473 INTERGENIC
X	4919493	X_4919493_INS [dm3] X_5025460_INS [dm6]	A	ATT	3.483e^-4	0.964	INTRON CR44833
2L	4360549	2L_4360549_SNP [dm3] 2L_4360549_SNP [dm6]	C	A	3.488e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4360550	2L_4360550_SNP [dm3] 2L_4360550_SNP [dm6]	C	A	3.488e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3142199	3L_3142199_SNP [dm3] 3L_3142199_SNP [dm6]	C	A	3.506e^-4	0.964	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3142206	3L_3142206_SNP [dm3] 3L_3142206_SNP [dm6]	G	A	3.506e^-4	0.964	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19385894	2L_19385894_INS [dm3] 2L_19385894_INS [dm6]	T	TTTAT	3.512e^-4	0.964	INTRON fon
X	6231918	X_6231918_SNP [dm3] X_6337885_SNP [dm6]	T	G	3.513e^-4	0.964	UTR_5_PRIME CG3842
3L	9066597	3L_9066597_SNP [dm3] 3L_9073497_SNP [dm6]	T	C	3.516e^-4	0.964	SYNONYMOUS_CODING CG4942 UPSTREAM CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15498295	X_15498295_DEL [dm3] X_15604262_DEL [dm6]	CTGTTTTTT	C	3.524e^-4	0.964	UTR_3_PRIME sog DOWNSTREAM sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4387245	3L_4387245_SNP [dm3] 3L_4387245_SNP [dm6]	G	A	3.547e^-4	0.964	INTRON slow
3R	24466314	3R_24466314_SNP [dm3] 3R_28640592_SNP [dm6]	T	C	3.548e^-4	0.964	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2466768	2L_2466768_SNP [dm3] 2L_2466768_SNP [dm6]	C	T	3.559e^-4	0.964	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6382763	2R_6382763_INS [dm3] 2R_10495258_INS [dm6]	G	GTCGATTTGTG...	3.559e^-4	0.964	INTRON lola
2R	13216765	2R_13216765_SNP [dm3] 2R_17329260_SNP [dm6]	C	T	3.560e^-4	0.964	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15128425	2L_15128425_SNP [dm3] 2L_15128425_SNP [dm6]	A	C	3.585e^-4	0.964	UPSTREAM CR44706 INTERGENIC
3L	17987156	3L_17987156_SNP [dm3] 3L_17994056_SNP [dm6]	G	C	3.586e^-4	0.964	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	11499008	2L_11499008_SNP [dm3] 2L_11499008_SNP [dm6]	T	G	3.593e^-4	0.964	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5939453	3L_5939453_DEL [dm3] 3L_5946353_DEL [dm6]	GG	G	3.603e^-4	0.964	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	8057359	2L_8057359_SNP [dm3] 2L_8057359_SNP [dm6]	T	C	3.604e^-4	0.964	SYNONYMOUS_CODING poe
3L	21022157	3L_21022157_SNP [dm3] 3L_21029057_SNP [dm6]	A	C	3.628e^-4	0.964	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21022178	3L_21022178_SNP [dm3] 3L_21029078_SNP [dm6]	A	T	3.628e^-4	0.964	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12616052	2R_12616052_SNP [dm3] 2R_16728547_SNP [dm6]	C	T	3.658e^-4	0.964	INTRON CG30463
X	13242158	X_13242158_SNP [dm3] X_13348125_SNP [dm6]	T	A	3.674e^-4	0.964	INTERGENIC
3L	17556986	3L_17556986_SNP [dm3] 3L_17563886_SNP [dm6]	T	C	3.693e^-4	0.964	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18108931	3L_18108931_SNP [dm3] 3L_18115831_SNP [dm6]	T	C	3.698e^-4	0.964	UTR_3_PRIME CG32195 INTRON CG7341
X	13366380	X_13366380_SNP [dm3] X_13472347_SNP [dm6]	G	A	3.705e^-4	0.964	INTRON Neto
3L	7065415	3L_7065415_SNP [dm3] 3L_7072315_SNP [dm6]	A	T	3.711e^-4	0.964	INTRON CG8641
3R	15002685	3R_15002685_SNP [dm3] 3R_19176963_SNP [dm6]	A	G	3.711e^-4	0.964	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3001392	3L_3001392_SNP [dm3] 3L_3001392_SNP [dm6]	T	C	3.722e^-4	0.964	UPSTREAM FMRFaR INTERGENIC
3L	13694428	3L_13694428_SNP [dm3] 3L_13701328_SNP [dm6]	A	C	3.735e^-4	0.964	INTRON bru-3
2L	9166555	2L_9166555_SNP [dm3] 2L_9166555_SNP [dm6]	A	C	3.740e^-4	0.964	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6549304	2L_6549304_SNP [dm3] 2L_6549304_SNP [dm6]	G	A	3.744e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14797163	3R_14797163_SNP [dm3] 3R_18971441_SNP [dm6]	T	C	3.746e^-4	0.964	INTRON CG42613 & 1 other
3R	12414756	3R_12414756_SNP [dm3] 3R_16589034_SNP [dm6]	G	A	3.746e^-4	0.964	INTERGENIC
2L	17556710	2L_17556710_SNP [dm3] 2L_17556710_SNP [dm6]	C	T	3.750e^-4	0.964	UPSTREAM CG7094 INTERGENIC
2L	17557053	2L_17557053_SNP [dm3] 2L_17557053_SNP [dm6]	G	T	3.750e^-4	0.964	INTERGENIC
X	16737349	X_16737349_SNP [dm3] X_16843316_SNP [dm6]	G	A	3.754e^-4	0.964	SYNONYMOUS_CODING RSG7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18524741	2R_18524741_INS [dm3] 2R_22637236_INS [dm6]	T	TAT	3.775e^-4	0.964	UPSTREAM bonsai INTRON Cdk9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14060479	X_14060479_SNP [dm3] X_14166446_SNP [dm6]	G	A	3.795e^-4	0.964	INTERGENIC
2R	15099104	2R_15099104_SNP [dm3] 2R_19211599_SNP [dm6]	G	T	3.797e^-4	0.964	INTRON hppy
3L	3515529	3L_3515529_SNP [dm3] 3L_3515529_SNP [dm6]	T	G	3.805e^-4	0.964	UPSTREAM Eip63E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22214898	3R_22214898_SNP [dm3] 3R_26389176_SNP [dm6]	A	C	3.823e^-4	0.964	INTERGENIC
X	13908670	X_13908670_SNP [dm3] X_14014637_SNP [dm6]	T	C	3.839e^-4	0.964	UPSTREAM tRNA:R:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8974227	3L_8974227_SNP [dm3] 3L_8981127_SNP [dm6]	T	A	3.844e^-4	0.964	UPSTREAM CG13314 INTERGENIC
2L	17555470	2L_17555470_SNP [dm3] 2L_17555470_SNP [dm6]	T	C	3.882e^-4	0.964	NON_SYNONYMOUS_CODING CG7094	TF binding site mE1_TFBS_sens
3L	16842978	3L_16842978_SNP [dm3] 3L_16849878_SNP [dm6]	G	A	3.922e^-4	0.964	NON_SYNONYMOUS_CODING CG9715	TF binding site mE1_TFBS_sens
X	7101454	X_7101454_SNP [dm3] X_7207421_SNP [dm6]	C	A	3.928e^-4	0.964	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
X	5734966	X_5734966_SNP [dm3] X_5840933_SNP [dm6]	C	T	3.929e^-4	0.964	DOWNSTREAM CG15765 INTERGENIC
X	5734993	X_5734993_SNP [dm3] X_5840960_SNP [dm6]	G	A	3.929e^-4	0.964	DOWNSTREAM CG15765 INTERGENIC
3L	3095665	3L_3095665_SNP [dm3] 3L_3095665_SNP [dm6]	G	A	3.930e^-4	0.964	UPSTREAM tRNA:CR32288 & 3 others INTRON Cht7
2L	11473587	2L_11473587_SNP [dm3] 2L_11473587_SNP [dm6]	A	G	3.944e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	19702881	2L_19702881_DEL [dm3] 2L_19702881_DEL [dm6]	CCCAGCC	T	3.945e^-4	0.964	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14669911	3L_14669911_SNP [dm3] 3L_14676811_SNP [dm6]	G	C	3.947e^-4	0.964	INTRON ome & 1 other
3L	14670091	3L_14670091_SNP [dm3] 3L_14676991_SNP [dm6]	A	T	3.947e^-4	0.964	INTRON ome & 1 other
3L	14670113	3L_14670113_SNP [dm3] 3L_14677013_SNP [dm6]	G	T	3.947e^-4	0.964	INTRON ome & 1 other
3L	6292512	3L_6292512_SNP [dm3] 3L_6299412_SNP [dm6]	A	G	3.957e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6672369	3L_6672369_SNP [dm3] 3L_6679269_SNP [dm6]	T	C	3.968e^-4	0.964	INTERGENIC
3L	6672375	3L_6672375_SNP [dm3] 3L_6679275_SNP [dm6]	A	T	3.968e^-4	0.964	INTERGENIC
3R	19902416	3R_19902416_INS [dm3] 3R_24076694_INS [dm6]	A	ACACA	4.005e^-4	0.964	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11951592	2L_11951592_SNP [dm3] 2L_11951592_SNP [dm6]	T	A	4.008e^-4	0.964	DOWNSTREAM CR43314 INTERGENIC
X	8725293	X_8725293_SNP [dm3] X_8831260_SNP [dm6]	T	C	4.016e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19583746	2L_19583746_SNP [dm3] 2L_19583746_SNP [dm6]	G	C	4.016e^-4	0.964	UPSTREAM CG10366 INTRON CG10262	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	6106869	3L_6106869_SNP [dm3] 3L_6113769_SNP [dm6]	T	A	4.017e^-4	0.964	INTRON Ets65A
3L	6106926	3L_6106926_SNP [dm3] 3L_6113826_SNP [dm6]	A	C	4.017e^-4	0.964	INTRON Ets65A
2R	12125758	2R_12125758_SNP [dm3] 2R_16238253_SNP [dm6]	A	C	4.045e^-4	0.964	UTR_3_PRIME krimp DOWNSTREAM CG3687
2R	12620232	2R_12620232_SNP [dm3] 2R_16732727_SNP [dm6]	C	T	4.047e^-4	0.964	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_sna
2R	5890143	2R_5890143_SNP [dm3] 2R_10002638_SNP [dm6]	C	G	4.052e^-4	0.964	INTRON Pka-R2
2L	11530292	2L_11530292_SNP [dm3] 2L_11530292_SNP [dm6]	C	T	4.072e^-4	0.964	INTRON CG31706
2L	11530294	2L_11530294_SNP [dm3] 2L_11530294_SNP [dm6]	G	C	4.072e^-4	0.964	INTRON CG31706
2L	11530306	2L_11530306_SNP [dm3] 2L_11530306_SNP [dm6]	A	T	4.072e^-4	0.964	INTRON CG31706
2L	11530309	2L_11530309_SNP [dm3] 2L_11530309_SNP [dm6]	G	A	4.072e^-4	0.964	INTRON CG31706
2L	11530335	2L_11530335_SNP [dm3] 2L_11530335_SNP [dm6]	C	T	4.072e^-4	0.964	INTRON CG31706
X	4245808	X_4245808_SNP [dm3] X_4351775_SNP [dm6]	C	T	4.088e^-4	0.964	INTRON norpA
2L	16373519	2L_16373519_SNP [dm3] 2L_16373519_SNP [dm6]	T	C	4.117e^-4	0.964	INTERGENIC
3R	26650220	3R_26650220_SNP [dm3] 3R_30824498_SNP [dm6]	T	C	4.119e^-4	0.964	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3L	13911077	3L_13911077_SNP [dm3] 3L_13917977_SNP [dm6]	T	A	4.122e^-4	0.964	INTRON Rgl
2L	8057506	2L_8057506_SNP [dm3] 2L_8057506_SNP [dm6]	C	T	4.134e^-4	0.964	SYNONYMOUS_CODING poe
2L	20432810	2L_20432810_SNP [dm3] 2L_20432810_SNP [dm6]	T	A	4.165e^-4	0.964	INTRON CG31688	TF binding site mE1_TFBS_chinmo
2L	17642271	2L_17642271_SNP [dm3] 2L_17642271_SNP [dm6]	T	C	4.168e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18762182	2R_18762182_SNP [dm3] 2R_22874659_SNP [dm6]	A	G	4.170e^-4	0.964	UPSTREAM PIP5K59B DOWNSTREAM CG13532 EXON CR45469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19700432	2L_19700432_SNP [dm3] 2L_19700432_SNP [dm6]	G	T	4.192e^-4	0.964	NON_SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	22851191	3L_22851191_SNP [dm3] 3L_22858091_SNP [dm6]	G	A	4.195e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8206138	2L_8206138_SNP [dm3] 2L_8206138_SNP [dm6]	G	A	4.200e^-4	0.964	UPSTREAM CG8419 & 2 others DOWNSTREAM CR44119 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	8206368	2L_8206368_SNP [dm3] 2L_8206368_SNP [dm6]	C	A	4.200e^-4	0.964	SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15456389	2R_15456389_SNP [dm3] 2R_19568884_SNP [dm6]	C	T	4.209e^-4	0.964	INTRON sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19434349	X_19434349_SNP [dm3] X_19540316_SNP [dm6]	G	A	4.220e^-4	0.964	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3R	14610060	3R_14610060_SNP [dm3] 3R_18784338_SNP [dm6]	C	T	4.238e^-4	0.964	INTRON CG7720
2L	7332539	2L_7332539_SNP [dm3] 2L_7332539_SNP [dm6]	T	C	4.246e^-4	0.964	INTERGENIC
2R	7029712	2R_7029712_SNP [dm3] 2R_11142207_SNP [dm6]	A	C	4.253e^-4	0.964	INTRON CG13229
3L	21000381	3L_21000381_SNP [dm3] 3L_21007281_SNP [dm6]	A	C	4.255e^-4	0.964	UPSTREAM scaRNA:PsiU6-40 INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	21004469	3L_21004469_SNP [dm3] 3L_21011369_SNP [dm6]	T	C	4.255e^-4	0.964	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12621922	3L_12621922_SNP [dm3] 3L_12628822_SNP [dm6]	T	G	4.257e^-4	0.964	INTRON CR32111
3L	12621931	3L_12621931_SNP [dm3] 3L_12628831_SNP [dm6]	A	G	4.257e^-4	0.964	INTRON CR32111
3L	12621960	3L_12621960_SNP [dm3] 3L_12628860_SNP [dm6]	A	T	4.257e^-4	0.964	INTRON CR32111
X	11213973	X_11213973_SNP [dm3] X_11319940_SNP [dm6]	T	G	4.261e^-4	0.964	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	845902	2L_845902_SNP [dm3] 2L_845902_SNP [dm6]	G	A	4.271e^-4	0.964	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14726425	2R_14726425_SNP [dm3] 2R_18838920_SNP [dm6]	A	G	4.314e^-4	0.964	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5146735	3R_5146735_SNP [dm3] 3R_9321013_SNP [dm6]	C	A	4.324e^-4	0.964	UPSTREAM HP1e INTRON CG8861
3L	4217323	3L_4217323_SNP [dm3] 3L_4217323_SNP [dm6]	T	A	4.328e^-4	0.964	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
3L	12307073	3L_12307073_SNP [dm3] 3L_12313973_SNP [dm6]	C	T	4.328e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs
2R	17554478	2R_17554478_SNP [dm3] 2R_21666973_SNP [dm6]	A	G	4.330e^-4	0.964	SYNONYMOUS_CODING CG42365 DOWNSTREAM CG42362 & 6 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6203651	X_6203651_SNP [dm3] X_6309618_SNP [dm6]	T	C	4.333e^-4	0.964	INTRON CG15894
2L	21316079	2L_21316079_INS [dm3] 2L_21316079_INS [dm6]	T	TAATATA	4.338e^-4	0.964	INTRON crc
2L	17589921	2L_17589921_SNP [dm3] 2L_17589921_SNP [dm6]	C	A	4.342e^-4	0.964	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4107631	2R_4107631_SNP [dm3] 2R_8220126_SNP [dm6]	G	C	4.350e^-4	0.964	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4107775	2R_4107775_SNP [dm3] 2R_8220270_SNP [dm6]	G	A	4.352e^-4	0.964	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15002634	3R_15002634_SNP [dm3] 3R_19176912_SNP [dm6]	T	C	4.367e^-4	0.964	UPSTREAM CG14282 INTERGENIC
2R	17014042	2R_17014042_SNP [dm3] 2R_21126537_SNP [dm6]	G	A	4.367e^-4	0.964	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17305029	X_17305029_SNP [dm3] X_17410996_SNP [dm6]	C	A	4.368e^-4	0.964	INTERGENIC
2R	14564826	2R_14564826_SNP [dm3] 2R_18677321_SNP [dm6]	G	T	4.371e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	14564827	2R_14564827_SNP [dm3] 2R_18677322_SNP [dm6]	A	G	4.371e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	14564832	2R_14564832_SNP [dm3] 2R_18677327_SNP [dm6]	T	A	4.371e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	19595307	3R_19595307_SNP [dm3] 3R_23769585_SNP [dm6]	G	A	4.371e^-4	0.964	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
3L	3219797	3L_3219797_SNP [dm3] 3L_3219797_SNP [dm6]	G	A	4.373e^-4	0.964	SYNONYMOUS_CODING CG12034 UPSTREAM CG14967	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19044194	2R_19044194_SNP [dm3] 2R_23156671_SNP [dm6]	G	T	4.380e^-4	0.964	DOWNSTREAM CG13545 INTRON CG9899
3R	19149101	3R_19149101_SNP [dm3] 3R_23323379_SNP [dm6]	C	A	4.396e^-4	0.964	INTRON pnt
3L	3001547	3L_3001547_SNP [dm3] 3L_3001547_SNP [dm6]	T	G	4.470e^-4	0.964	UPSTREAM FMRFaR INTERGENIC
3R	14726820	3R_14726820_SNP [dm3] 3R_18901098_SNP [dm6]	G	A	4.490e^-4	0.964	DOWNSTREAM CG14294 & 1 other INTERGENIC
3L	2568817	3L_2568817_SNP [dm3] 3L_2568817_SNP [dm6]	T	G	4.492e^-4	0.964	INTRON msn
3L	18852785	3L_18852785_SNP [dm3] 3L_18859685_SNP [dm6]	A	G	4.503e^-4	0.964	INTERGENIC
2L	3700722	2L_3700722_SNP [dm3] 2L_3700722_SNP [dm6]	C	T	4.525e^-4	0.964	NON_SYNONYMOUS_CODING Sfp24C1 UPSTREAM CG42467 DOWNSTREAM CG42464 & 1 other
2L	3700739	2L_3700739_INS [dm3] 2L_3700739_INS [dm6]	AA	TTTGG	4.525e^-4	0.964	UPSTREAM CG42467 DOWNSTREAM CG42464 & 1 other
2L	17533643	2L_17533643_SNP [dm3] 2L_17533643_SNP [dm6]	A	C	4.526e^-4	0.964	INTERGENIC
3R	18728811	3R_18728811_SNP [dm3] 3R_22903089_SNP [dm6]	T	A	4.529e^-4	0.964	INTRON klg
3R	14256052	3R_14256052_SNP [dm3] 3R_18430330_SNP [dm6]	G	T	4.529e^-4	0.964	UTR_3_PRIME fru DOWNSTREAM fru INTRON fru
2L	17589870	2L_17589870_SNP [dm3] 2L_17589870_SNP [dm6]	A	G	4.553e^-4	0.964	START_GAINED Oli UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	4.555e^-4	0.964	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	12941100	X_12941100_SNP [dm3] X_13047067_SNP [dm6]	A	G	4.558e^-4	0.964	INTRON rad
X	12941124	X_12941124_SNP [dm3] X_13047091_SNP [dm6]	C	A	4.558e^-4	0.964	INTRON rad
2L	13118325	2L_13118325_SNP [dm3] 2L_13118325_SNP [dm6]	T	C	4.571e^-4	0.964	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3R	9656397	3R_9656397_SNP [dm3] 3R_13830675_SNP [dm6]	C	T	4.576e^-4	0.964	INTERGENIC
3L	3094383	3L_3094383_SNP [dm3] 3L_3094383_SNP [dm6]	A	G	4.596e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
3L	3094387	3L_3094387_SNP [dm3] 3L_3094387_SNP [dm6]	A	T	4.596e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
2R	1292616	2R_1292616_SNP [dm3] 2R_5405111_SNP [dm6]	A	G	4.602e^-4	0.964	INTERGENIC	transposable element FlyBase
X	6728673	X_6728673_SNP [dm3] X_6834640_SNP [dm6]	G	A	4.611e^-4	0.964	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3879365	2L_3879365_SNP [dm3] 2L_3879365_SNP [dm6]	C	A	4.614e^-4	0.964	INTRON capu
2L	7332470	2L_7332470_SNP [dm3] 2L_7332470_SNP [dm6]	T	C	4.622e^-4	0.964	INTERGENIC
2R	16113720	2R_16113720_SNP [dm3] 2R_20226215_SNP [dm6]	G	A	4.628e^-4	0.964	INTERGENIC
2L	16969921	2L_16969921_SNP [dm3] 2L_16969921_SNP [dm6]	T	A	4.628e^-4	0.964	INTERGENIC
3L	14639263	3L_14639263_SNP [dm3] 3L_14646163_SNP [dm6]	T	G	4.634e^-4	0.964	INTRON dlp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2405623	X_2405623_SNP [dm3] X_2511590_SNP [dm6]	C	A	4.638e^-4	0.964	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22569554	3R_22569554_SNP [dm3] 3R_26743832_SNP [dm6]	T	G	4.644e^-4	0.964	INTERGENIC
2R	16620576	2R_16620576_SNP [dm3] 2R_20733071_SNP [dm6]	T	A	4.651e^-4	0.964	INTRON dpr
3R	21795290	3R_21795290_SNP [dm3] 3R_25969568_SNP [dm6]	G	A	4.681e^-4	0.964	UPSTREAM CG42261 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21795302	3R_21795302_SNP [dm3] 3R_25969580_SNP [dm6]	T	C	4.681e^-4	0.964	UPSTREAM CG42261 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9130749	3L_9130749_DEL [dm3] 3L_9137649_DEL [dm6]	AT	A	4.705e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	3271888	2R_3271888_SNP [dm3] 2R_7384383_SNP [dm6]	G	A	4.709e^-4	0.964	NON_SYNONYMOUS_CODING cos	TF binding site mE1_TFBS_chinmo
2L	12149265	2L_12149265_SNP [dm3] 2L_12149265_SNP [dm6]	T	G	4.716e^-4	0.964	INTRON CG31760
2L	13061658	2L_13061658_INS [dm3] 2L_13061658_INS [dm6]	A	AA	4.730e^-4	0.964	INTERGENIC
2L	2683828	2L_2683828_DEL [dm3] 2L_2683828_DEL [dm6]	ATA	A	4.738e^-4	0.964	INTRON CG31690
2R	19342897	2R_19342897_SNP [dm3] 2R_23455374_SNP [dm6]	C	T	4.749e^-4	0.964	INTRON CG43795
2R	16956189	2R_16956189_SNP [dm3] 2R_21068684_SNP [dm6]	C	A	4.756e^-4	0.964	INTRON Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4113491	X_4113491_SNP [dm3] X_4219458_SNP [dm6]	C	T	4.771e^-4	0.964	INTRON CG15570
3L	21007741	3L_21007741_SNP [dm3] 3L_21014641_SNP [dm6]	A	T	4.773e^-4	0.964	INTRON skd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21019839	3L_21019839_SNP [dm3] 3L_21026739_SNP [dm6]	C	A	4.773e^-4	0.964	UPSTREAM skd INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17583028	2L_17583028_SNP [dm3] 2L_17583028_SNP [dm6]	G	A	4.823e^-4	0.964	UPSTREAM CR45111 INTERGENIC
2L	7104837	2L_7104837_SNP [dm3] 2L_7104837_SNP [dm6]	A	T	4.853e^-4	0.964	INTRON Pvf3
3R	20727473	3R_20727473_SNP [dm3] 3R_24901751_SNP [dm6]	C	A	4.870e^-4	0.964	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23270761	3L_23270761_SNP [dm3] 3L_23277661_SNP [dm6]	A	G	4.879e^-4	0.964	INTRON nAChRalpha4
X	7363972	X_7363972_SNP [dm3] X_7469939_SNP [dm6]	T	C	4.901e^-4	0.964	INTERGENIC
3L	1107029	3L_1107029_SNP [dm3] 3L_1107029_SNP [dm6]	A	G	4.930e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5693975	X_5693975_SNP [dm3] X_5799942_SNP [dm6]	T	G	4.940e^-4	0.964	INTERGENIC
3L	11949928	3L_11949928_SNP [dm3] 3L_11956828_SNP [dm6]	C	A	4.964e^-4	0.964	NON_SYNONYMOUS_CODING CG11570 DOWNSTREAM CG7248
X	14161133	X_14161133_SNP [dm3] X_14267100_SNP [dm6]	C	T	4.971e^-4	0.964	UPSTREAM CG13404 INTRON na
X	6217511	X_6217511_SNP [dm3] X_6323478_SNP [dm6]	G	A	4.974e^-4	0.964	INTRON CG15894
2R	3670569	2R_3670569_SNP [dm3] 2R_7783064_SNP [dm6]	A	G	4.976e^-4	0.964	UTR_3_PRIME cn UPSTREAM CR45108 & 2 others	TF binding site BDTNP1_TFBS_dl
2R	6356747	2R_6356747_SNP [dm3] 2R_10469242_SNP [dm6]	G	C	4.986e^-4	0.964	SYNONYMOUS_CODING CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7124059	3L_7124059_SNP [dm3] 3L_7130959_SNP [dm6]	T	A	5.033e^-4	0.964	UPSTREAM CG8628 & 1 other INTRON CG8628
3R	21913381	3R_21913381_SNP [dm3] 3R_26087659_SNP [dm6]	T	G	5.044e^-4	0.964	INTRON dys
2L	17390079	2L_17390079_SNP [dm3] 2L_17390079_SNP [dm6]	T	C	5.049e^-4	0.964	INTRON CLIP-190
2R	12861824	2R_12861824_SNP [dm3] 2R_16974319_SNP [dm6]	C	A	5.049e^-4	0.964	INTRON Cbp53E
X	18927985	X_18927985_SNP [dm3] X_19033952_SNP [dm6]	T	C	5.059e^-4	0.964	INTERGENIC
3L	11916367	3L_11916367_SNP [dm3] 3L_11923267_SNP [dm6]	T	C	5.066e^-4	0.964	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5532281	X_5532281_SNP [dm3] X_5638248_SNP [dm6]	A	G	5.072e^-4	0.964	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21686057	3L_21686057_SNP [dm3] 3L_21692957_SNP [dm6]	G	A	5.075e^-4	0.964	UTR_3_PRIME CG32447
2R	1337160	2R_1337160_SNP [dm3] 2R_5449655_SNP [dm6]	G	C	5.079e^-4	0.964	INTRON laccase2
2R	12675995	2R_12675995_SNP [dm3] 2R_16788490_SNP [dm6]	C	T	5.082e^-4	0.964	SYNONYMOUS_CODING CG5522
2L	16373576	2L_16373576_SNP [dm3] 2L_16373576_SNP [dm6]	C	T	5.088e^-4	0.964	INTERGENIC
X	21998566	X_21998566_SNP [dm3] X_22596730_SNP [dm6]	C	G	5.089e^-4	0.964	INTRON Cda4	transposable element FlyBase
2L	17427900	2L_17427900_SNP [dm3] 2L_17427900_SNP [dm6]	A	G	5.095e^-4	0.964	UTR_5_PRIME Dif INTRON Dif
2L	1726421	2L_1726421_SNP [dm3] 2L_1726421_SNP [dm6]	T	G	5.137e^-4	0.964	SYNONYMOUS_CODING Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12804706	2R_12804706_SNP [dm3] 2R_16917201_SNP [dm6]	G	T	5.139e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	7358958	2L_7358958_SNP [dm3] 2L_7358958_SNP [dm6]	G	A	5.144e^-4	0.964	INTERGENIC
2L	16118055	2L_16118055_SNP [dm3] 2L_16118055_SNP [dm6]	A	T	5.148e^-4	0.964	INTERGENIC
2L	16118060	2L_16118060_SNP [dm3] 2L_16118060_SNP [dm6]	G	A	5.148e^-4	0.964	INTERGENIC
2L	16118114	2L_16118114_SNP [dm3] 2L_16118114_SNP [dm6]	A	G	5.148e^-4	0.964	INTERGENIC
X	16293450	X_16293450_INS [dm3] X_16399417_INS [dm6]	C	CTACAGAATATTCCCAAC...	5.180e^-4	0.964	DOWNSTREAM CG9981 INTRON mei-41	TF binding site mE1_TFBS_chinmo
3L	12626731	3L_12626731_SNP [dm3] 3L_12633631_SNP [dm6]	A	G	5.180e^-4	0.964	EXON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20699141	X_20699141_SNP [dm3] X_20828114_SNP [dm6]	T	A	5.184e^-4	0.964	INTRON shakB
X	20699142	X_20699142_SNP [dm3] X_20828115_SNP [dm6]	T	C	5.184e^-4	0.964	INTRON shakB
2L	12448791	2L_12448791_SNP [dm3] 2L_12448791_SNP [dm6]	T	C	5.189e^-4	0.964	UPSTREAM CG5421 INTRON Oatp33Eb
2L	4360568	2L_4360568_DEL [dm3] 2L_4360568_DEL [dm6]	CGATCCC	C	5.190e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7332018	2L_7332018_SNP [dm3] 2L_7332018_SNP [dm6]	C	T	5.215e^-4	0.964	INTERGENIC
X	11918884	X_11918884_SNP [dm3] X_12024851_SNP [dm6]	T	G	5.227e^-4	0.964	SYNONYMOUS_CODING Usp7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4129730	3L_4129730_SNP [dm3] 3L_4129730_SNP [dm6]	A	G	5.229e^-4	0.964	SYNONYMOUS_CODING ens INTRON ens
X	16907181	X_16907181_SNP [dm3] X_17013148_SNP [dm6]	A	G	5.237e^-4	0.964	INTRON CG45002
2R	13183065	2R_13183065_SNP [dm3] 2R_17295560_SNP [dm6]	G	A	5.251e^-4	0.964	INTRON mbl
2L	2892255	2L_2892255_SNP [dm3] 2L_2892255_SNP [dm6]	T	C	5.257e^-4	0.964	INTRON lilli
3L	17225993	3L_17225993_SNP [dm3] 3L_17232893_SNP [dm6]	A	T	5.260e^-4	0.964	INTRON Rbp6
3R	15002745	3R_15002745_DEL [dm3] 3R_19177023_DEL [dm6]	AAAATATTCTAC...	A	5.266e^-4	0.964	UTR_5_PRIME CG14282	TF binding site mE1_TFBS_cad
X	7776793	X_7776793_SNP [dm3] X_7882760_SNP [dm6]	A	G	5.280e^-4	0.964	SYNONYMOUS_CODING Ir7f
2L	11530342	2L_11530342_SNP [dm3] 2L_11530342_SNP [dm6]	T	G	5.286e^-4	0.964	INTRON CG31706
X	17728132	X_17728132_SNP [dm3] X_17834099_SNP [dm6]	G	A	5.297e^-4	0.964	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	12100463	2R_12100463_SNP [dm3] 2R_16212958_SNP [dm6]	G	C	5.312e^-4	0.964	INTRON mrj	TF binding site mE1_TFBS_inv
3L	12621953	3L_12621953_SNP [dm3] 3L_12628853_SNP [dm6]	C	T	5.346e^-4	0.964	INTRON CR32111
X	4855538	X_4855538_SNP [dm3] X_4961505_SNP [dm6]	T	C	5.348e^-4	0.964	UPSTREAM SIP3 INTRON CR44833
2R	1668086	2R_1668086_SNP [dm3] 2R_5780581_SNP [dm6]	A	G	5.361e^-4	0.964	INTRON ZnT41F	transposable element FlyBase
3R	5729508	3R_5729508_SNP [dm3] 3R_9903786_SNP [dm6]	C	T	5.370e^-4	0.964	INTRON Glut4EF
2L	5619171	2L_5619171_SNP [dm3] 2L_5619171_SNP [dm6]	T	C	5.374e^-4	0.964	DOWNSTREAM CR44796 INTERGENIC
3L	9716353	3L_9716353_SNP [dm3] 3L_9723253_SNP [dm6]	G	T	5.397e^-4	0.964	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9716354	3L_9716354_SNP [dm3] 3L_9723254_SNP [dm6]	T	G	5.397e^-4	0.964	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16223108	2R_16223108_SNP [dm3] 2R_20335603_SNP [dm6]	C	G	5.398e^-4	0.964	INTERGENIC
X	17181497	X_17181497_SNP [dm3] X_17287464_SNP [dm6]	A	G	5.420e^-4	0.964	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
2L	14900310	2L_14900310_SNP [dm3] 2L_14900310_SNP [dm6]	T	G	5.425e^-4	0.964	INTERGENIC
2L	11200154	2L_11200154_SNP [dm3] 2L_11200154_SNP [dm6]	C	T	5.426e^-4	0.964	INTRON Ca-beta
2L	11498378	2L_11498378_SNP [dm3] 2L_11498378_SNP [dm6]	C	A	5.430e^-4	0.964	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3094516	3L_3094516_SNP [dm3] 3L_3094516_SNP [dm6]	G	A	5.435e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
2R	10186175	2R_10186175_SNP [dm3] 2R_14298670_SNP [dm6]	G	A	5.442e^-4	0.964	UTR_3_PRIME Ih
3R	11578264	3R_11578264_SNP [dm3] 3R_15752542_SNP [dm6]	G	T	5.446e^-4	0.964	INTERGENIC
3L	20949862	3L_20949862_SNP [dm3] 3L_20956762_SNP [dm6]	C	T	5.447e^-4	0.964	UPSTREAM CG10588 & 1 other INTERGENIC
2L	19693480	2L_19693480_SNP [dm3] 2L_19693480_SNP [dm6]	G	A	5.449e^-4	0.964	INTRON Lar
X	12509945	X_12509945_SNP [dm3] X_12615912_SNP [dm6]	A	G	5.453e^-4	0.964	UPSTREAM CG11085 & 1 other DOWNSTREAM CG2543 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20471479	2R_20471479_SNP [dm3] 2R_24583956_SNP [dm6]	A	C	5.455e^-4	0.964	INTRON pio
2R	16955921	2R_16955921_SNP [dm3] 2R_21068416_SNP [dm6]	G	A	5.461e^-4	0.964	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
2R	2400463	2R_2400463_SNP [dm3] 2R_6512958_SNP [dm6]	C	T	5.470e^-4	0.964	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	12873706	2L_12873706_SNP [dm3] 2L_12873706_SNP [dm6]	G	A	5.481e^-4	0.964	INTERGENIC
3L	12388421	3L_12388421_SNP [dm3] 3L_12395321_SNP [dm6]	C	T	5.481e^-4	0.964	SYNONYMOUS_CODING CG32104 UPSTREAM Obp69a	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12509589	X_12509589_SNP [dm3] X_12615556_SNP [dm6]	T	G	5.481e^-4	0.964	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12509605	X_12509605_SNP [dm3] X_12615572_SNP [dm6]	A	T	5.481e^-4	0.964	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12509607	X_12509607_SNP [dm3] X_12615574_SNP [dm6]	C	T	5.481e^-4	0.964	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	21017063	3L_21017063_SNP [dm3] 3L_21023963_SNP [dm6]	A	G	5.493e^-4	0.964	INTRON skd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20734901	3R_20734901_SNP [dm3] 3R_24909179_SNP [dm6]	T	C	5.499e^-4	0.964	INTERGENIC
3R	20734921	3R_20734921_SNP [dm3] 3R_24909199_SNP [dm6]	G	A	5.499e^-4	0.964	INTERGENIC
X	19434319	X_19434319_SNP [dm3] X_19540286_SNP [dm6]	A	C	5.500e^-4	0.964	INTRON CG32532	TF binding site mE1_TFBS_chinmo
X	19434321	X_19434321_SNP [dm3] X_19540288_SNP [dm6]	A	G	5.500e^-4	0.964	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3R	14466281	3R_14466281_SNP [dm3] 3R_18640559_SNP [dm6]	T	A	5.512e^-4	0.964	INTRON qin & 1 other	TF binding site BDTNP1_TFBS_z
2L	9323558	2L_9323558_SNP [dm3] 2L_9323558_SNP [dm6]	C	A	5.521e^-4	0.964	INTERGENIC
3L	10934664	3L_10934664_SNP [dm3] 3L_10941564_SNP [dm6]	T	A	5.521e^-4	0.964	INTERGENIC
3L	10934690	3L_10934690_SNP [dm3] 3L_10941590_SNP [dm6]	G	A	5.521e^-4	0.964	INTERGENIC
2L	2077511	2L_2077511_SNP [dm3] 2L_2077511_SNP [dm6]	T	C	5.531e^-4	0.964	INTRON dpr3
2R	8407609	2R_8407609_SNP [dm3] 2R_12520104_SNP [dm6]	T	C	5.545e^-4	0.964	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2L	4397283	2L_4397283_SNP [dm3] 2L_4397283_SNP [dm6]	T	A	5.546e^-4	0.964	SYNONYMOUS_CODING l_2_k05819
3L	6292580	3L_6292580_SNP [dm3] 3L_6299480_SNP [dm6]	A	C	5.547e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18859334	2L_18859334_SNP [dm3] 2L_18859334_SNP [dm6]	T	C	5.549e^-4	0.964	UPSTREAM mRpL13 & 1 other DOWNSTREAM tup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	9130671	3L_9130671_SNP [dm3] 3L_9137571_SNP [dm6]	T	A	5.552e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9130706	3L_9130706_SNP [dm3] 3L_9137606_SNP [dm6]	T	A	5.552e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14439490	2R_14439490_SNP [dm3] 2R_18551985_SNP [dm6]	A	G	5.553e^-4	0.964	INTERGENIC
X	5230405	X_5230405_SNP [dm3] X_5336372_SNP [dm6]	T	G	5.573e^-4	0.964	INTERGENIC
2L	6141600	2L_6141600_SNP [dm3] 2L_6141600_SNP [dm6]	G	A	5.573e^-4	0.964	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8005335	2L_8005335_SNP [dm3] 2L_8005335_SNP [dm6]	A	C	5.586e^-4	0.964	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
3L	13292734	3L_13292734_SNP [dm3] 3L_13299634_SNP [dm6]	A	G	5.590e^-4	0.964	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3L	13292735	3L_13292735_SNP [dm3] 3L_13299635_SNP [dm6]	G	A	5.590e^-4	0.964	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3R	10986279	3R_10986279_SNP [dm3] 3R_15160557_SNP [dm6]	C	T	5.606e^-4	0.964	INTRON Gyc88E
3R	10986285	3R_10986285_SNP [dm3] 3R_15160563_SNP [dm6]	A	T	5.606e^-4	0.964	INTRON Gyc88E
2L	4398171	2L_4398171_SNP [dm3] 2L_4398171_SNP [dm6]	G	A	5.607e^-4	0.964	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_sens
3L	11916412	3L_11916412_SNP [dm3] 3L_11923312_SNP [dm6]	G	A	5.626e^-4	0.964	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5734977	X_5734977_SNP [dm3] X_5840944_SNP [dm6]	A	T	5.634e^-4	0.964	DOWNSTREAM CG15765 INTERGENIC
3R	25286581	3R_25286581_SNP [dm3] 3R_29460859_SNP [dm6]	T	A	5.655e^-4	0.964	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2R	12100508	2R_12100508_SNP [dm3] 2R_16213003_SNP [dm6]	T	C	5.656e^-4	0.964	INTRON mrj	TF binding site mE1_TFBS_inv
3L	13489569	3L_13489569_SNP [dm3] 3L_13496469_SNP [dm6]	G	T	5.662e^-4	0.964	INTRON Tgi
3L	13489579	3L_13489579_SNP [dm3] 3L_13496479_SNP [dm6]	A	C	5.662e^-4	0.964	INTRON Tgi
3L	13489593	3L_13489593_SNP [dm3] 3L_13496493_SNP [dm6]	T	A	5.662e^-4	0.964	INTRON Tgi
3L	10071322	3L_10071322_SNP [dm3] 3L_10078222_SNP [dm6]	C	T	5.667e^-4	0.964	INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8204470	2L_8204470_SNP [dm3] 2L_8204470_SNP [dm6]	T	C	5.669e^-4	0.964	DOWNSTREAM CR44120 INTRON CR44119 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6832105	2L_6832105_SNP [dm3] 2L_6832105_SNP [dm6]	C	T	5.679e^-4	0.964	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20686612	X_20686612_SNP [dm3] X_20815585_SNP [dm6]	A	T	5.693e^-4	0.964	INTRON shakB
X	20691770	X_20691770_SNP [dm3] X_20820743_SNP [dm6]	G	C	5.693e^-4	0.964	INTRON shakB
X	20693131	X_20693131_SNP [dm3] X_20822104_SNP [dm6]	G	C	5.693e^-4	0.964	UPSTREAM CG15450 INTRON shakB
X	20696413	X_20696413_SNP [dm3] X_20825386_SNP [dm6]	G	A	5.693e^-4	0.964	SYNONYMOUS_CODING CG15450 INTRON shakB	TF binding site mE1_TFBS_chinmo
3L	15878290	3L_15878290_SNP [dm3] 3L_15885190_SNP [dm6]	G	T	5.701e^-4	0.964	INTRON pHCl EXON CR44050
3L	15878291	3L_15878291_SNP [dm3] 3L_15885191_SNP [dm6]	A	C	5.701e^-4	0.964	INTRON pHCl EXON CR44050
3L	8731213	3L_8731213_SNP [dm3] 3L_8738113_SNP [dm6]	T	G	5.708e^-4	0.964	INTRON Prm	TF binding site mE1_TFBS_cad
2R	17814992	2R_17814992_SNP [dm3] 2R_21927487_SNP [dm6]	A	T	5.709e^-4	0.964	INTRON Fili
2L	19693482	2L_19693482_SNP [dm3] 2L_19693482_SNP [dm6]	C	A	5.713e^-4	0.964	INTRON Lar
3L	19522117	3L_19522117_SNP [dm3] 3L_19529017_SNP [dm6]	T	C	5.737e^-4	0.964	INTERGENIC
2L	16602705	2L_16602705_SNP [dm3] 2L_16602705_SNP [dm6]	T	G	5.748e^-4	0.964	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21630581	3R_21630581_SNP [dm3] 3R_25804859_SNP [dm6]	T	G	5.789e^-4	0.964	INTERGENIC
2R	12384254	2R_12384254_SNP [dm3] 2R_16496749_SNP [dm6]	G	C	5.793e^-4	0.964	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10019827	3L_10019827_SNP [dm3] 3L_10026727_SNP [dm6]	T	C	5.799e^-4	0.964	INTRON dpr6
X	6727246	X_6727246_SNP [dm3] X_6833213_SNP [dm6]	A	T	5.818e^-4	0.964	UPSTREAM CG12796 INTRON nonC
2L	7104454	2L_7104454_SNP [dm3] 2L_7104454_SNP [dm6]	C	G	5.846e^-4	0.964	INTRON Pvf3
2L	19385832	2L_19385832_SNP [dm3] 2L_19385832_SNP [dm6]	C	T	5.861e^-4	0.964	INTRON fon
2R	10186828	2R_10186828_SNP [dm3] 2R_14299323_SNP [dm6]	C	T	5.887e^-4	0.964	UTR_3_PRIME Ih DOWNSTREAM Ih & 1 other
X	5326874	X_5326874_INS [dm3] X_5432841_INS [dm6]	A	AA	5.903e^-4	0.964	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
X	5851346	X_5851346_SNP [dm3] X_5957313_SNP [dm6]	C	T	5.917e^-4	0.964	DOWNSTREAM fs_1_M3 INTRON CG6067	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21998539	X_21998539_SNP [dm3] X_22596703_SNP [dm6]	G	T	5.943e^-4	0.964	INTRON Cda4	transposable element FlyBase
3L	6672338	3L_6672338_SNP [dm3] 3L_6679238_SNP [dm6]	G	T	5.954e^-4	0.964	INTERGENIC
3L	19461038	3L_19461038_SNP [dm3] 3L_19467938_SNP [dm6]	A	C	5.964e^-4	0.964	UTR_3_PRIME CG32214 UPSTREAM CG14096 DOWNSTREAM CG32214
3L	9490809	3L_9490809_SNP [dm3] 3L_9497709_SNP [dm6]	T	C	5.975e^-4	0.964	UPSTREAM path INTRON path
2R	16720820	2R_16720820_SNP [dm3] 2R_20833315_SNP [dm6]	A	G	6.009e^-4	0.964	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2L	16390963	2L_16390963_SNP [dm3] 2L_16390963_SNP [dm6]	G	A	6.010e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	9116092	3L_9116092_SNP [dm3] 3L_9122992_SNP [dm6]	G	A	6.014e^-4	0.964	INTRON bol	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20103238	2R_20103238_SNP [dm3] 2R_24215715_SNP [dm6]	G	T	6.015e^-4	0.964	INTRON CG30419
3L	10222184	3L_10222184_SNP [dm3] 3L_10229084_SNP [dm6]	T	G	6.015e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7580902	2L_7580902_DEL [dm3] 2L_7580902_DEL [dm6]	AA	A	6.022e^-4	0.964	INTERGENIC
3L	8813198	3L_8813198_SNP [dm3] 3L_8820098_SNP [dm6]	C	A	6.032e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	5214007	2R_5214007_SNP [dm3] 2R_9326502_SNP [dm6]	A	G	6.038e^-4	0.964	INTRON CG13954 & 1 other
2R	16153247	2R_16153247_SNP [dm3] 2R_20265742_SNP [dm6]	A	T	6.054e^-4	0.964	UPSTREAM CR43812 DOWNSTREAM RpS18 INTRON CG8908	TF binding site mE1_TFBS_cad
3R	15002818	3R_15002818_SNP [dm3] 3R_19177096_SNP [dm6]	C	T	6.094e^-4	0.964	SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
2R	10368671	2R_10368671_SNP [dm3] 2R_14481166_SNP [dm6]	C	G	6.111e^-4	0.964	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19105596	2L_19105596_SNP [dm3] 2L_19105596_SNP [dm6]	T	C	6.113e^-4	0.964	INTRON Lim3
X	12509390	X_12509390_SNP [dm3] X_12615357_SNP [dm6]	G	C	6.113e^-4	0.964	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5195467	3R_5195467_SNP [dm3] 3R_9369745_SNP [dm6]	T	C	6.125e^-4	0.964	INTRON FER
2R	17594253	2R_17594253_DEL [dm3] 2R_21706748_DEL [dm6]	TGG	T	6.127e^-4	0.964	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8889767	2R_8889767_SNP [dm3] 2R_13002262_SNP [dm6]	C	A	6.131e^-4	0.964	NON_SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25286619	3R_25286619_SNP [dm3] 3R_29460897_SNP [dm6]	C	G	6.133e^-4	0.964	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11027168	2L_11027168_SNP [dm3] 2L_11027168_SNP [dm6]	A	C	6.134e^-4	0.964	INTRON Samuel
3R	20404976	3R_20404976_SNP [dm3] 3R_24579254_SNP [dm6]	T	C	6.148e^-4	0.964	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17533557	2L_17533557_SNP [dm3] 2L_17533557_SNP [dm6]	A	C	6.152e^-4	0.964	INTERGENIC
X	13696893	X_13696893_SNP [dm3] X_13802860_SNP [dm6]	A	T	6.173e^-4	0.964	SYNONYMOUS_CODING inaE
3R	20623801	3R_20623801_SNP [dm3] 3R_24798079_SNP [dm6]	G	A	6.179e^-4	0.964	SYNONYMOUS_CODING Ude DOWNSTREAM Ets96B
2R	19360944	2R_19360944_SNP [dm3] 2R_23473421_SNP [dm6]	C	A	6.184e^-4	0.964	SYNONYMOUS_CODING Or59c INTRON CG43795
2L	19650866	2L_19650866_SNP [dm3] 2L_19650866_SNP [dm6]	G	C	6.192e^-4	0.964	INTRON Lar
2R	3037267	2R_3037267_SNP [dm3] 2R_7149762_SNP [dm6]	A	G	6.214e^-4	0.964	UPSTREAM CR44200 & 2 others DOWNSTREAM Spn43Aa INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2257472	3L_2257472_SNP [dm3] 3L_2257472_SNP [dm6]	T	C	6.225e^-4	0.964	UTR_5_PRIME CG2034 UPSTREAM CG2034 & 1 other
2R	6891950	2R_6891950_DEL [dm3] 2R_11004445_DEL [dm6]	CC	C	6.228e^-4	0.964	INTRON luna
2R	5131662	2R_5131662_INS [dm3] 2R_9244157_INS [dm6]	C	CC	6.249e^-4	0.964	INTRON hig & 1 other
3L	16270047	3L_16270047_SNP [dm3] 3L_16276947_SNP [dm6]	C	G	6.269e^-4	0.964	UPSTREAM CG13065 INTERGENIC
3R	22554668	3R_22554668_SNP [dm3] 3R_26728946_SNP [dm6]	C	T	6.273e^-4	0.964	SYNONYMOUS_CODING CG14245 INTRON CG14246
3L	21007469	3L_21007469_SNP [dm3] 3L_21014369_SNP [dm6]	A	C	6.294e^-4	0.964	INTRON skd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17551793	2R_17551793_SNP [dm3] 2R_21664288_SNP [dm6]	T	G	6.316e^-4	0.964	START_GAINED CG42362 & 1 other UTR_5_PRIME CG42362 & 1 other UPSTREAM CG42362 & 1 other DOWNSTREAM CR44748	TF binding site mE1_TFBS_inv
2R	4104818	2R_4104818_SNP [dm3] 2R_8217313_SNP [dm6]	G	A	6.318e^-4	0.964	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad
2L	6447585	2L_6447585_SNP [dm3] 2L_6447585_SNP [dm6]	C	A	6.321e^-4	0.964	DOWNSTREAM retm INTRON CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8950838	X_8950838_SNP [dm3] X_9056805_SNP [dm6]	C	A	6.331e^-4	0.964	INTRON CG15365	TF binding site mE1_TFBS_chinmo
2L	4093704	2L_4093704_SNP [dm3] 2L_4093704_SNP [dm6]	A	G	6.349e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	4415918	2L_4415918_SNP [dm3] 2L_4415918_SNP [dm6]	T	C	6.352e^-4	0.964	INTRON CG15431
2L	4770972	2L_4770972_SNP [dm3] 2L_4770972_SNP [dm6]	C	T	6.370e^-4	0.964	INTRON CG15630
X	5230466	X_5230466_SNP [dm3] X_5336433_SNP [dm6]	A	G	6.371e^-4	0.964	INTERGENIC
X	6217482	X_6217482_SNP [dm3] X_6323449_SNP [dm6]	G	T	6.378e^-4	0.964	INTRON CG15894
2R	12363499	2R_12363499_SNP [dm3] 2R_16475994_SNP [dm6]	G	T	6.381e^-4	0.964	INTERGENIC
X	13250114	X_13250114_SNP [dm3] X_13356081_SNP [dm6]	G	A	6.383e^-4	0.964	INTERGENIC
2L	18527860	2L_18527860_SNP [dm3] 2L_18527860_SNP [dm6]	G	A	6.401e^-4	0.964	SYNONYMOUS_CODING CG10211	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1680581	3L_1680581_DEL [dm3] 3L_1680581_DEL [dm6]	TT	T	6.408e^-4	0.964	INTRON CG7991
2L	14872564	2L_14872564_SNP [dm3] 2L_14872564_SNP [dm6]	G	A	6.427e^-4	0.964	UPSTREAM CG4480 INTERGENIC
X	5206748	X_5206748_SNP [dm3] X_5312715_SNP [dm6]	T	C	6.427e^-4	0.964	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20720105	X_20720105_SNP [dm3] X_20849078_SNP [dm6]	A	T	6.433e^-4	0.964	INTRON shakB
3R	22955972	3R_22955972_SNP [dm3] 3R_27130250_SNP [dm6]	T	A	6.435e^-4	0.964	INTRON CG6051
3L	16163764	3L_16163764_SNP [dm3] 3L_16170664_SNP [dm6]	A	C	6.442e^-4	0.964	UPSTREAM CG33796 DOWNSTREAM CG33795 INTERGENIC
3R	3269482	3R_3269482_SNP [dm3] 3R_7443760_SNP [dm6]	A	G	6.478e^-4	0.964	INTERGENIC
3R	6249453	3R_6249453_SNP [dm3] 3R_10423731_SNP [dm6]	A	T	6.483e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8790083	2L_8790083_SNP [dm3] 2L_8790083_SNP [dm6]	T	C	6.491e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8442525	2R_8442525_SNP [dm3] 2R_12555020_SNP [dm6]	A	T	6.497e^-4	0.964	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2R	12620555	2R_12620555_SNP [dm3] 2R_16733050_SNP [dm6]	C	T	6.516e^-4	0.964	UPSTREAM CG30463 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17892019	X_17892019_SNP [dm3] X_17997986_SNP [dm6]	A	T	6.540e^-4	0.964	INTRON Sh
2R	7752475	2R_7752475_SNP [dm3] 2R_11864970_SNP [dm6]	A	C	6.540e^-4	0.964	DOWNSTREAM Damm & 1 other INTERGENIC
2R	19016085	2R_19016085_SNP [dm3] 2R_23128562_SNP [dm6]	G	T	6.545e^-4	0.964	UPSTREAM CR44455 DOWNSTREAM CG3215 & 1 other INTERGENIC
3L	4387241	3L_4387241_SNP [dm3] 3L_4387241_SNP [dm6]	G	A	6.551e^-4	0.964	INTRON slow
2R	10368669	2R_10368669_SNP [dm3] 2R_14481164_SNP [dm6]	G	C	6.561e^-4	0.964	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10368680	2R_10368680_SNP [dm3] 2R_14481175_SNP [dm6]	C	G	6.561e^-4	0.964	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9251571	2R_9251571_SNP [dm3] 2R_13364066_SNP [dm6]	G	A	6.570e^-4	0.964	INTERGENIC
3R	16125902	3R_16125902_SNP [dm3] 3R_20300180_SNP [dm6]	T	C	6.587e^-4	0.964	INTRON cic
X	15402749	X_15402749_SNP [dm3] X_15508716_SNP [dm6]	T	C	6.608e^-4	0.964	UPSTREAM mir-304 & 1 other DOWNSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13885654	X_13885654_SNP [dm3] X_13991621_SNP [dm6]	G	T	6.614e^-4	0.964	DOWNSTREAM CR44655 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6106898	3L_6106898_SNP [dm3] 3L_6113798_SNP [dm6]	A	T	6.623e^-4	0.964	INTRON Ets65A
X	12639837	X_12639837_SNP [dm3] X_12745804_SNP [dm6]	T	A	6.624e^-4	0.964	SYNONYMOUS_CODING CG4004 UPSTREAM CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10456730	2R_10456730_SNP [dm3] 2R_14569225_SNP [dm6]	G	T	6.638e^-4	0.964	INTRON ttv
3R	11141369	3R_11141369_SNP [dm3] 3R_15315647_SNP [dm6]	A	G	6.652e^-4	0.964	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	19865695	3L_19865695_SNP [dm3] 3L_19872595_SNP [dm6]	C	T	6.658e^-4	0.964	INTRON CG8334
X	4982639	X_4982639_SNP [dm3] X_5088606_SNP [dm6]	T	C	6.676e^-4	0.964	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26525876	3R_26525876_SNP [dm3] 3R_30700154_SNP [dm6]	G	A	6.683e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14293392	2L_14293392_SNP [dm3] 2L_14293392_SNP [dm6]	G	A	6.683e^-4	0.964	INTRON wb EXON CR43640	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17728100	X_17728100_SNP [dm3] X_17834067_SNP [dm6]	C	T	6.684e^-4	0.964	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	14439504	2R_14439504_SNP [dm3] 2R_18551999_SNP [dm6]	T	A	6.688e^-4	0.964	INTERGENIC
2R	14439510	2R_14439510_SNP [dm3] 2R_18552005_SNP [dm6]	T	C	6.688e^-4	0.964	INTERGENIC
X	13908684	X_13908684_SNP [dm3] X_14014651_SNP [dm6]	T	G	6.697e^-4	0.964	UPSTREAM tRNA:R:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13808745	2L_13808745_SNP [dm3] 2L_13808745_SNP [dm6]	A	C	6.699e^-4	0.964	UTR_3_PRIME adat INTRON CAH1
3L	8573547	3L_8573547_SNP [dm3] 3L_8580447_SNP [dm6]	T	C	6.703e^-4	0.964	INTRON CG43078
2L	12336161	2L_12336161_SNP [dm3] 2L_12336161_SNP [dm6]	C	T	6.743e^-4	0.964	INTERGENIC
X	2413914	X_2413914_SNP [dm3] X_2519881_SNP [dm6]	C	T	6.745e^-4	0.964	INTRON trol
2L	7393015	2L_7393015_SNP [dm3] 2L_7393015_SNP [dm6]	A	G	6.748e^-4	0.964	INTRON CG5160
X	6727290	X_6727290_DEL [dm3] X_6833257_DEL [dm6]	CAACAGTAC	C	6.765e^-4	0.964	UPSTREAM CG12796 INTRON nonC
2R	20207442	2R_20207442_SNP [dm3] 2R_24319919_SNP [dm6]	T	G	6.765e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5184176	X_5184176_SNP [dm3] X_5290143_SNP [dm6]	G	A	6.774e^-4	0.964	INTERGENIC
2R	2941505	2R_2941505_SNP [dm3] 2R_7054000_SNP [dm6]	A	T	6.779e^-4	0.964	UTR_3_PRIME Tsp42En UPSTREAM Tsp42Eo DOWNSTREAM Tsp42Ep
3L	6292430	3L_6292430_INS [dm3] 3L_6299330_INS [dm6]	T	TT	6.779e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16639446	2L_16639446_SNP [dm3] 2L_16639446_SNP [dm6]	C	G	6.781e^-4	0.964	INTRON CG42389
2R	13158289	2R_13158289_SNP [dm3] 2R_17270784_SNP [dm6]	A	G	6.783e^-4	0.964	INTRON mbl
2R	1292999	2R_1292999_SNP [dm3] 2R_5405494_SNP [dm6]	A	C	6.794e^-4	0.964	INTERGENIC	transposable element FlyBase
3L	17983942	3L_17983942_SNP [dm3] 3L_17990842_SNP [dm6]	T	C	6.796e^-4	0.964	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	17983948	3L_17983948_SNP [dm3] 3L_17990848_SNP [dm6]	T	C	6.796e^-4	0.964	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	12631267	3L_12631267_SNP [dm3] 3L_12638167_SNP [dm6]	G	A	6.798e^-4	0.964	INTRON CR32111
3L	1107160	3L_1107160_SNP [dm3] 3L_1107160_SNP [dm6]	T	C	6.819e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9130757	3L_9130757_INS [dm3] 3L_9137657_INS [dm6]	T	TG	6.843e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	703086	2R_703086_SNP [dm3] 2R_4815581_SNP [dm6]	T	C	6.862e^-4	0.964	UTR_3_PRIME CG17528
3L	21806861	3L_21806861_SNP [dm3] 3L_21813761_SNP [dm6]	A	G	6.863e^-4	0.964	UPSTREAM CG43895 INTRON eg
2L	14743824	2L_14743824_SNP [dm3] 2L_14743824_SNP [dm6]	C	T	6.879e^-4	0.964	UTR_3_PRIME CG34166 UPSTREAM CG42681 DOWNSTREAM CG34166	TF binding site mE1_TFBS_cad
3L	4377342	3L_4377342_SNP [dm3] 3L_4377342_SNP [dm6]	G	A	6.882e^-4	0.964	DOWNSTREAM CR44360 INTRON DopEcR
X	15404036	X_15404036_SNP [dm3] X_15510003_SNP [dm6]	C	T	6.886e^-4	0.964	DOWNSTREAM mir-304 & 2 others INTRON Gmap	TF binding site mE1_TFBS_cad
X	12509622	X_12509622_INS [dm3] X_12615589_INS [dm6]	A	AA	6.887e^-4	0.964	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4418783	2L_4418783_SNP [dm3] 2L_4418783_SNP [dm6]	C	A	6.894e^-4	0.964	DOWNSTREAM tRNA:CR31963 INTRON CG15431
X	1161739	X_1161739_SNP [dm3] X_1267706_SNP [dm6]	C	A	6.911e^-4	0.964	INTRON Atf3
X	4801467	X_4801467_SNP [dm3] X_4907434_SNP [dm6]	C	T	6.922e^-4	0.964	DOWNSTREAM CG42594 INTRON CG6927	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	11559703	X_11559703_SNP [dm3] X_11665670_SNP [dm6]	T	G	6.940e^-4	0.964	INTRON Ptp10D
2L	8407760	2L_8407760_SNP [dm3] 2L_8407760_SNP [dm6]	T	A	6.961e^-4	0.964	INTRON emb
2L	13801813	2L_13801813_DEL [dm3] 2L_13801813_DEL [dm6]	AGCGAAATG	A	6.985e^-4	0.964	INTERGENIC
3L	8365638	3L_8365638_SNP [dm3] 3L_8372538_SNP [dm6]	A	C	6.998e^-4	0.964	UTR_5_PRIME ImpE1
3L	6224437	3L_6224437_SNP [dm3] 3L_6231337_SNP [dm6]	T	A	7.006e^-4	0.964	DOWNSTREAM CG13299 INTERGENIC
2R	16093973	2R_16093973_SNP [dm3] 2R_20206468_SNP [dm6]	C	A	7.007e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3232281	2L_3232281_SNP [dm3] 2L_3232281_SNP [dm6]	A	C	7.021e^-4	0.964	INTERGENIC
2L	7096067	2L_7096067_SNP [dm3] 2L_7096067_SNP [dm6]	G	C	7.021e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4348706	2L_4348706_SNP [dm3] 2L_4348706_SNP [dm6]	A	T	7.033e^-4	0.964	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15032602	2L_15032602_SNP [dm3] 2L_15032602_SNP [dm6]	A	C	7.042e^-4	0.964	UPSTREAM CG31832 INTRON GABA-B-R1
3L	11355185	3L_11355185_INS [dm3] 3L_11362085_INS [dm6]	T	TG	7.049e^-4	0.964	UTR_3_PRIME CG6163 DOWNSTREAM CG6163
2R	13880265	2R_13880265_SNP [dm3] 2R_17992760_SNP [dm6]	C	G	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880272	2R_13880272_SNP [dm3] 2R_17992767_SNP [dm6]	A	T	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880274	2R_13880274_SNP [dm3] 2R_17992769_SNP [dm6]	C	T	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880279	2R_13880279_SNP [dm3] 2R_17992774_SNP [dm6]	A	T	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880280	2R_13880280_INS [dm3] 2R_17992775_INS [dm6]	A	ACGG	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880286	2R_13880286_INS [dm3] 2R_17992781_INS [dm6]	A	AAGAATTATG	7.050e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17382960	3L_17382960_SNP [dm3] 3L_17389860_SNP [dm6]	G	A	7.060e^-4	0.964	UPSTREAM CG13731 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5851291	X_5851291_SNP [dm3] X_5957258_SNP [dm6]	A	G	7.078e^-4	0.964	SYNONYMOUS_CODING CG6067 DOWNSTREAM fs_1_M3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13567580	2L_13567580_DEL [dm3] 2L_13567580_DEL [dm6]	TATA	T	7.079e^-4	0.964	INTRON kuz
3L	9194468	3L_9194468_SNP [dm3] 3L_9201368_SNP [dm6]	C	G	7.091e^-4	0.964	INTERGENIC
3R	14715491	3R_14715491_SNP [dm3] 3R_18889769_SNP [dm6]	T	C	7.095e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21280051	3R_21280051_SNP [dm3] 3R_25454329_SNP [dm6]	T	C	7.109e^-4	0.964	INTRON Fur1
2R	3666058	2R_3666058_SNP [dm3] 2R_7778553_SNP [dm6]	G	A	7.110e^-4	0.964	SYNONYMOUS_CODING CG30497 START_GAINED CG45093 UTR_5_PRIME CG45093
3L	6224532	3L_6224532_SNP [dm3] 3L_6231432_SNP [dm6]	G	T	7.125e^-4	0.964	DOWNSTREAM CG13299 INTERGENIC
3L	3094450	3L_3094450_SNP [dm3] 3L_3094450_SNP [dm6]	A	G	7.154e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
2L	11498573	2L_11498573_SNP [dm3] 2L_11498573_SNP [dm6]	G	A	7.178e^-4	0.964	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20727285	3R_20727285_SNP [dm3] 3R_24901563_SNP [dm6]	G	A	7.187e^-4	0.964	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643
2R	1527941	2R_1527941_SNP [dm3] 2R_5640436_SNP [dm6]	C	T	7.190e^-4	0.964	DOWNSTREAM CG11665 INTERGENIC	TF binding site mE1_TFBS_sens
2L	4719160	2L_4719160_SNP [dm3] 2L_4719160_SNP [dm6]	A	T	7.194e^-4	0.964	INTRON CG34351
3L	8974373	3L_8974373_SNP [dm3] 3L_8981273_SNP [dm6]	T	C	7.225e^-4	0.964	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
X	16907145	X_16907145_SNP [dm3] X_17013112_SNP [dm6]	C	A	7.235e^-4	0.964	INTRON CG45002
X	14710637	X_14710637_SNP [dm3] X_14816604_SNP [dm6]	C	T	7.244e^-4	0.964	INTRON rut
X	14710653	X_14710653_SNP [dm3] X_14816620_SNP [dm6]	C	G	7.244e^-4	0.964	INTRON rut
X	14776762	X_14776762_SNP [dm3] X_14882729_SNP [dm6]	T	A	7.252e^-4	0.964	UPSTREAM CG45065 & 1 other INTRON Flo2
2L	4397277	2L_4397277_SNP [dm3] 2L_4397277_SNP [dm6]	A	C	7.254e^-4	0.964	SYNONYMOUS_CODING l_2_k05819
2L	14293391	2L_14293391_SNP [dm3] 2L_14293391_SNP [dm6]	T	C	7.264e^-4	0.964	INTRON wb EXON CR43640	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17748031	2R_17748031_SNP [dm3] 2R_21860526_SNP [dm6]	T	C	7.272e^-4	0.964	UPSTREAM CG9294 INTERGENIC
2L	6351407	2L_6351407_SNP [dm3] 2L_6351407_SNP [dm6]	T	C	7.276e^-4	0.964	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	18593223	3R_18593223_SNP [dm3] 3R_22767501_SNP [dm6]	G	T	7.300e^-4	0.964	SPLICE_SITE_REGION CG13841 DOWNSTREAM CG43091 INTRON Usp12-46 & 2 others
2L	9307391	2L_9307391_SNP [dm3] 2L_9307391_SNP [dm6]	C	A	7.301e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17873735	2R_17873735_SNP [dm3] 2R_21986230_SNP [dm6]	A	T	7.312e^-4	0.964	SYNONYMOUS_CODING CG30401 DOWNSTREAM CG34370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16270041	3L_16270041_SNP [dm3] 3L_16276941_SNP [dm6]	T	C	7.319e^-4	0.964	UPSTREAM CG13065 INTERGENIC
X	3730013	X_3730013_SNP [dm3] X_3835980_SNP [dm6]	A	G	7.321e^-4	0.964	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	3730060	X_3730060_SNP [dm3] X_3836027_SNP [dm6]	T	A	7.321e^-4	0.964	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	6896965	2R_6896965_SNP [dm3] 2R_11009460_SNP [dm6]	G	A	7.322e^-4	0.964	INTRON luna	TF binding site mE1_TFBS_inv
3L	2149817	3L_2149817_SNP [dm3] 3L_2149817_SNP [dm6]	G	C	7.326e^-4	0.964	SYNONYMOUS_CODING zormin
2R	12620410	2R_12620410_DEL [dm3] 2R_16732905_DEL [dm6]	ATACT	GC	7.328e^-4	0.964	UTR_5_PRIME CG30463
2R	12620419	2R_12620419_DEL [dm3] 2R_16732914_DEL [dm6]	CCATAAAGCTAATAAATAGT...	C	7.328e^-4	0.964	UTR_5_PRIME CG30463 UPSTREAM CG30463 INTRAGENIC CG30463 INTERGENIC
2R	5889063	2R_5889063_SNP [dm3] 2R_10001558_SNP [dm6]	G	A	7.362e^-4	0.964	INTRON Pka-R2
3L	2728880	3L_2728880_SNP [dm3] 3L_2728880_SNP [dm6]	T	C	7.364e^-4	0.964	SYNONYMOUS_CODING Mrtf UTR_5_PRIME Mrtf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9343266	3L_9343266_SNP [dm3] 3L_9350166_SNP [dm6]	T	C	7.373e^-4	0.964	DOWNSTREAM UGP INTRON PGRP-LF
3L	9343268	3L_9343268_SNP [dm3] 3L_9350168_SNP [dm6]	A	G	7.373e^-4	0.964	DOWNSTREAM UGP INTRON PGRP-LF
2R	4106028	2R_4106028_SNP [dm3] 2R_8218523_SNP [dm6]	G	C	7.375e^-4	0.964	INTRON LRP1	TF binding site mE1_TFBS_cad
2R	4106029	2R_4106029_SNP [dm3] 2R_8218524_SNP [dm6]	T	C	7.375e^-4	0.964	INTRON LRP1	TF binding site mE1_TFBS_cad
2L	15032615	2L_15032615_SNP [dm3] 2L_15032615_SNP [dm6]	G	A	7.398e^-4	0.964	UPSTREAM CG31832 INTRON GABA-B-R1
X	6217501	X_6217501_SNP [dm3] X_6323468_SNP [dm6]	T	G	7.399e^-4	0.964	INTRON CG15894
2L	10474836	2L_10474836_SNP [dm3] 2L_10474836_SNP [dm6]	T	C	7.418e^-4	0.964	UPSTREAM RluA-1 INTERGENIC
X	12941175	X_12941175_DEL [dm3] X_13047142_DEL [dm6]	AAATAATATGGTGATAAAA...	A	7.422e^-4	0.964	INTRON rad
2L	15614897	2L_15614897_SNP [dm3] 2L_15614897_SNP [dm6]	G	C	7.426e^-4	0.964	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
2L	16520453	2L_16520453_SNP [dm3] 2L_16520453_SNP [dm6]	A	T	7.427e^-4	0.964	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	7774229	X_7774229_SNP [dm3] X_7880196_SNP [dm6]	A	G	7.447e^-4	0.964	SYNONYMOUS_CODING Ir7e	TF binding site mE1_TFBS_HSA
3L	7281130	3L_7281130_SNP [dm3] 3L_7288030_SNP [dm6]	A	T	7.451e^-4	0.964	INTRON unc-13-4A
3L	11852108	3L_11852108_SNP [dm3] 3L_11859008_SNP [dm6]	A	T	7.453e^-4	0.964	INTRON CG44837
3L	6672341	3L_6672341_SNP [dm3] 3L_6679241_SNP [dm6]	G	A	7.494e^-4	0.964	INTERGENIC
2L	20351891	2L_20351891_SNP [dm3] 2L_20351891_SNP [dm6]	C	G	7.505e^-4	0.964	INTRON RtGEF
3L	7308456	3L_7308456_SNP [dm3] 3L_7315356_SNP [dm6]	C	G	7.510e^-4	0.964	INTERGENIC
3R	11516952	3R_11516952_SNP [dm3] 3R_15691230_SNP [dm6]	C	A	7.518e^-4	0.964	DOWNSTREAM pxb INTERGENIC
2L	19279523	2L_19279523_SNP [dm3] 2L_19279523_SNP [dm6]	A	G	7.520e^-4	0.964	INTERGENIC
2L	19280870	2L_19280870_SNP [dm3] 2L_19280870_SNP [dm6]	C	T	7.520e^-4	0.964	INTERGENIC
2L	19292824	2L_19292824_SNP [dm3] 2L_19292824_SNP [dm6]	A	T	7.520e^-4	0.964	INTERGENIC
2L	19319507	2L_19319507_SNP [dm3] 2L_19319507_SNP [dm6]	G	A	7.520e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19325639	2L_19325639_SNP [dm3] 2L_19325639_SNP [dm6]	T	A	7.520e^-4	0.964	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	19206242	2R_19206242_SNP [dm3] 2R_23318719_SNP [dm6]	A	G	7.520e^-4	0.964	SYNONYMOUS_CODING CG30412	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15002874	3L_15002874_SNP [dm3] 3L_15009774_SNP [dm6]	A	G	7.520e^-4	0.964	INTRON Reck
3L	15002882	3L_15002882_SNP [dm3] 3L_15009782_SNP [dm6]	G	T	7.520e^-4	0.964	INTRON Reck
3L	15002890	3L_15002890_SNP [dm3] 3L_15009790_SNP [dm6]	T	C	7.520e^-4	0.964	INTRON Reck
3L	15002978	3L_15002978_SNP [dm3] 3L_15009878_SNP [dm6]	T	G	7.520e^-4	0.964	INTRON Reck
3L	15002979	3L_15002979_DEL [dm3] 3L_15009879_DEL [dm6]	ATTCAGT	A	7.520e^-4	0.964	INTRON Reck
3L	5651751	3L_5651751_SNP [dm3] 3L_5658651_SNP [dm6]	T	C	7.520e^-4	0.964	INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7123961	3L_7123961_SNP [dm3] 3L_7130861_SNP [dm6]	G	A	7.520e^-4	0.964	UPSTREAM CG8628 INTERGENIC
X	7887444	X_7887444_SNP [dm3] X_7993411_SNP [dm6]	A	T	7.520e^-4	0.964	INTERGENIC
X	7887513	X_7887513_SNP [dm3] X_7993480_SNP [dm6]	G	C	7.520e^-4	0.964	INTERGENIC
X	7887566	X_7887566_SNP [dm3] X_7993533_SNP [dm6]	C	T	7.520e^-4	0.964	INTERGENIC
X	7887618	X_7887618_SNP [dm3] X_7993585_SNP [dm6]	A	T	7.520e^-4	0.964	INTERGENIC
X	7887634	X_7887634_SNP [dm3] X_7993601_SNP [dm6]	T	G	7.520e^-4	0.964	INTERGENIC
3R	4423569	3R_4423569_SNP [dm3] 3R_8597847_SNP [dm6]	T	A	7.553e^-4	0.964	INTRON 5-HT2B
3L	11040313	3L_11040313_SNP [dm3] 3L_11047213_SNP [dm6]	C	G	7.553e^-4	0.964	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5184138	X_5184138_SNP [dm3] X_5290105_SNP [dm6]	C	A	7.559e^-4	0.964	INTERGENIC
2R	20474126	2R_20474126_DEL [dm3] 2R_24586603_DEL [dm6]	CC	C	7.564e^-4	0.964	INTRON pio
2L	4418399	2L_4418399_DEL [dm3] 2L_4418399_DEL [dm6]	CT	C	7.564e^-4	0.964	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2R	6891970	2R_6891970_SNP [dm3] 2R_11004465_SNP [dm6]	A	G	7.565e^-4	0.964	INTRON luna
3L	4049138	3L_4049138_SNP [dm3] 3L_4049138_SNP [dm6]	A	G	7.567e^-4	0.964	INTRON CG1136
2R	18266733	2R_18266733_DEL [dm3] 2R_22379228_DEL [dm6]	ACA	A	7.584e^-4	0.964	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
2R	18266925	2R_18266925_DEL [dm3] 2R_22379420_DEL [dm6]	CG	C	7.584e^-4	0.964	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
2R	12804805	2R_12804805_SNP [dm3] 2R_16917300_SNP [dm6]	C	T	7.591e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	12804832	2R_12804832_SNP [dm3] 2R_16917327_SNP [dm6]	G	A	7.591e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	17690038	3R_17690038_SNP [dm3] 3R_21864316_SNP [dm6]	C	T	7.594e^-4	0.964	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19081199	3R_19081199_SNP [dm3] 3R_23255477_SNP [dm6]	A	G	7.595e^-4	0.964	UTR_3_PRIME wda DOWNSTREAM EloA	TF binding site mE1_TFBS_cad
3L	17498401	3L_17498401_SNP [dm3] 3L_17505301_SNP [dm6]	T	A	7.599e^-4	0.964	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20557296	2L_20557296_SNP [dm3] 2L_20557296_SNP [dm6]	C	A	7.599e^-4	0.964	INTERGENIC
X	9835751	X_9835751_SNP [dm3] X_9941718_SNP [dm6]	A	G	7.605e^-4	0.964	INTERGENIC
X	4919486	X_4919486_SNP [dm3] X_5025453_SNP [dm6]	A	G	7.609e^-4	0.964	INTRON CR44833
2L	8057758	2L_8057758_SNP [dm3] 2L_8057758_SNP [dm6]	T	C	7.615e^-4	0.964	SYNONYMOUS_CODING poe
2R	11905184	2R_11905184_SNP [dm3] 2R_16017679_SNP [dm6]	A	T	7.632e^-4	0.964	UPSTREAM CG8399 & 1 other INTERGENIC
2L	6122320	2L_6122320_SNP [dm3] 2L_6122320_SNP [dm6]	C	T	7.635e^-4	0.964	SYNONYMOUS_CODING stai
3L	8513027	3L_8513027_SNP [dm3] 3L_8519927_SNP [dm6]	T	C	7.637e^-4	0.964	SYNONYMOUS_CODING GstO3 UPSTREAM se
3L	989479	3L_989479_SNP [dm3] 3L_989479_SNP [dm6]	C	G	7.645e^-4	0.964	NON_SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17182878	3R_17182878_SNP [dm3] 3R_21357156_SNP [dm6]	G	C	7.652e^-4	0.964	SYNONYMOUS_CODING pre-mod_mdg4_-J & 1 other UTR_5_PRIME pre-mod_mdg4_-I & 1 other UTR_3_PRIME pre-mod_mdg4_-P & 2 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	18620285	X_18620285_SNP [dm3] X_18726252_SNP [dm6]	T	C	7.657e^-4	0.964	NON_SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6772206	2L_6772206_SNP [dm3] 2L_6772206_SNP [dm6]	A	G	7.662e^-4	0.964	INTRON CG11321
2R	16151640	2R_16151640_SNP [dm3] 2R_20264135_SNP [dm6]	T	A	7.678e^-4	0.964	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18108960	3L_18108960_SNP [dm3] 3L_18115860_SNP [dm6]	T	C	7.687e^-4	0.964	UTR_3_PRIME CG32195 INTRON CG7341
2L	1206020	2L_1206020_INS [dm3] 2L_1206020_INS [dm6]	C	CCTACTCCGCC...	7.697e^-4	0.964	DOWNSTREAM CG14342 INTERGENIC
2R	18768231	2R_18768231_SNP [dm3] 2R_22880708_SNP [dm6]	G	A	7.702e^-4	0.964	UTR_3_PRIME PIP5K59B DOWNSTREAM CG3501
2L	20602862	2L_20602862_SNP [dm3] 2L_20602862_SNP [dm6]	A	G	7.717e^-4	0.964	DOWNSTREAM CG31677 INTRON CR44909
3L	6672354	3L_6672354_DEL [dm3] 3L_6679254_DEL [dm6]	AGGTATAGT	G	7.719e^-4	0.964	INTERGENIC
2L	7516673	2L_7516673_SNP [dm3] 2L_7516673_SNP [dm6]	G	A	7.720e^-4	0.964	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14535120	2R_14535120_SNP [dm3] 2R_18647615_SNP [dm6]	A	T	7.721e^-4	0.964	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	14535123	2R_14535123_SNP [dm3] 2R_18647618_SNP [dm6]	C	T	7.721e^-4	0.964	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	14535130	2R_14535130_SNP [dm3] 2R_18647625_SNP [dm6]	G	A	7.721e^-4	0.964	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	14535134	2R_14535134_SNP [dm3] 2R_18647629_SNP [dm6]	T	C	7.721e^-4	0.964	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	14535136	2R_14535136_SNP [dm3] 2R_18647631_SNP [dm6]	T	G	7.721e^-4	0.964	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2L	17553794	2L_17553794_INS [dm3] 2L_17553794_INS [dm6]	T	TT	7.725e^-4	0.964	DOWNSTREAM CG7094 INTERGENIC
2L	9418515	2L_9418515_SNP [dm3] 2L_9418515_SNP [dm6]	A	T	7.746e^-4	0.964	INTRON Mco1
2R	10666527	2R_10666527_SNP [dm3] 2R_14779022_SNP [dm6]	G	C	7.754e^-4	0.964	INTRON kn
2R	10666533	2R_10666533_SNP [dm3] 2R_14779028_SNP [dm6]	G	A	7.754e^-4	0.964	INTRON kn
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	7.754e^-4	0.964	INTRON kn
3R	26635546	3R_26635546_SNP [dm3] 3R_30809824_SNP [dm6]	T	C	7.782e^-4	0.964	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9735714	3L_9735714_SNP [dm3] 3L_9742614_SNP [dm6]	T	A	7.790e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10575717	X_10575717_SNP [dm3] X_10681684_SNP [dm6]	A	T	7.800e^-4	0.964	INTRON X11Lbeta
2R	9248867	2R_9248867_SNP [dm3] 2R_13361362_SNP [dm6]	C	T	7.808e^-4	0.964	DOWNSTREAM CR45312 INTERGENIC
2R	15456340	2R_15456340_SNP [dm3] 2R_19568835_SNP [dm6]	A	T	7.829e^-4	0.964	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8617021	3L_8617021_SNP [dm3] 3L_8623921_SNP [dm6]	C	T	7.833e^-4	0.964	UPSTREAM Zasp66 & 1 other INTERGENIC
2L	19650623	2L_19650623_SNP [dm3] 2L_19650623_SNP [dm6]	A	T	7.835e^-4	0.964	INTRON Lar
2L	7332074	2L_7332074_DEL [dm3] 2L_7332074_DEL [dm6]	TTTT	T	7.841e^-4	0.964	INTERGENIC
2L	7332083	2L_7332083_INS [dm3] 2L_7332083_INS [dm6]	T	TTT	7.841e^-4	0.964	INTERGENIC
3L	10873716	3L_10873716_INS [dm3] 3L_10880616_INS [dm6]	T	TT	7.841e^-4	0.964	DOWNSTREAM CG6409 & 1 other INTERGENIC
3R	24443092	3R_24443092_SNP [dm3] 3R_28617370_SNP [dm6]	G	A	7.847e^-4	0.964	INTRON CG10011
X	14219746	X_14219746_SNP [dm3] X_14325713_SNP [dm6]	G	A	7.857e^-4	0.964	INTRON dpr8
3R	18842266	3R_18842266_SNP [dm3] 3R_23016544_SNP [dm6]	C	G	7.865e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	3933169	2R_3933169_SNP [dm3] 2R_8045664_SNP [dm6]	T	G	7.886e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	14506797	X_14506797_SNP [dm3] X_14612764_SNP [dm6]	G	A	7.887e^-4	0.964	INTRON NetA
2L	1913010	2L_1913010_SNP [dm3] 2L_1913010_SNP [dm6]	A	T	7.901e^-4	0.964	INTRON CG7337
3R	8735161	3R_8735161_SNP [dm3] 3R_12909439_SNP [dm6]	A	T	7.913e^-4	0.964	DOWNSTREAM CG10909 INTERGENIC
X	4245810	X_4245810_SNP [dm3] X_4351777_SNP [dm6]	A	G	7.921e^-4	0.964	INTRON norpA
3L	845557	3L_845557_SNP [dm3] 3L_845557_SNP [dm6]	A	C	7.925e^-4	0.964	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
3R	9958533	3R_9958533_SNP [dm3] 3R_14132811_SNP [dm6]	T	G	7.926e^-4	0.964	UPSTREAM CG14356 INTERGENIC
X	12509751	X_12509751_SNP [dm3] X_12615718_SNP [dm6]	G	C	7.928e^-4	0.964	UPSTREAM CG11085 DOWNSTREAM CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20446542	3L_20446542_SNP [dm3] 3L_20453442_SNP [dm6]	A	T	7.930e^-4	0.964	UPSTREAM snoRNA:Or-CD11 & 3 others EXON Uhg8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9659175	2R_9659175_SNP [dm3] 2R_13771670_SNP [dm6]	C	T	7.936e^-4	0.964	INTRON Cpr50Ca
3L	709342	3L_709342_SNP [dm3] 3L_709342_SNP [dm6]	C	T	7.938e^-4	0.964	SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709536	3L_709536_SNP [dm3] 3L_709536_SNP [dm6]	T	C	7.938e^-4	0.964	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709561	3L_709561_SNP [dm3] 3L_709561_SNP [dm6]	C	T	7.938e^-4	0.964	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	15089105	3R_15089105_DEL [dm3] 3R_19263383_DEL [dm6]	ATACA	G	7.938e^-4	0.964	INTERGENIC
2R	17203106	2R_17203106_SNP [dm3] 2R_21315601_SNP [dm6]	C	T	7.956e^-4	0.964	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12371205	2L_12371205_SNP [dm3] 2L_12371205_SNP [dm6]	G	T	7.961e^-4	0.964	INTRON bru-2
2L	7580940	2L_7580940_SNP [dm3] 2L_7580940_SNP [dm6]	A	G	7.975e^-4	0.964	UPSTREAM Spn28B INTERGENIC
2L	1626905	2L_1626905_SNP [dm3] 2L_1626905_SNP [dm6]	A	C	7.975e^-4	0.964	UPSTREAM CR44603 INTERGENIC
2L	1443858	2L_1443858_SNP [dm3] 2L_1443858_SNP [dm6]	T	G	7.985e^-4	0.964	DOWNSTREAM CG43402 INTERGENIC
2L	17559111	2L_17559111_SNP [dm3] 2L_17559111_SNP [dm6]	G	T	7.992e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17560055	2L_17560055_SNP [dm3] 2L_17560055_SNP [dm6]	T	C	8.015e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22881485	3R_22881485_SNP [dm3] 3R_27055763_SNP [dm6]	T	C	8.020e^-4	0.964	INTRON RYa-R
X	13725361	X_13725361_SNP [dm3] X_13831328_SNP [dm6]	T	A	8.021e^-4	0.964	INTRON AMPdeam	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18781224	3L_18781224_SNP [dm3] 3L_18788124_SNP [dm6]	G	A	8.044e^-4	0.964	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18028270	2R_18028270_SNP [dm3] 2R_22140765_SNP [dm6]	C	T	8.048e^-4	0.964	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20463943	2L_20463943_SNP [dm3] 2L_20463943_SNP [dm6]	C	T	8.049e^-4	0.964	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC
2L	17373848	2L_17373848_SNP [dm3] 2L_17373848_SNP [dm6]	A	T	8.061e^-4	0.964	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21327856	X_21327856_SNP [dm3] X_21456829_SNP [dm6]	T	A	8.076e^-4	0.964	INTRON CG42343
2L	7518217	2L_7518217_SNP [dm3] 2L_7518217_SNP [dm6]	C	G	8.106e^-4	0.964	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
3R	6754959	3R_6754959_SNP [dm3] 3R_10929237_SNP [dm6]	A	T	8.112e^-4	0.964	INTERGENIC
3R	6754966	3R_6754966_SNP [dm3] 3R_10929244_SNP [dm6]	G	T	8.112e^-4	0.964	INTERGENIC
3R	6754985	3R_6754985_SNP [dm3] 3R_10929263_SNP [dm6]	T	C	8.112e^-4	0.964	INTERGENIC
2L	19308819	2L_19308819_SNP [dm3] 2L_19308819_SNP [dm6]	A	G	8.117e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12516918	2R_12516918_SNP [dm3] 2R_16629413_SNP [dm6]	G	A	8.121e^-4	0.964	NON_SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9735712	3L_9735712_SNP [dm3] 3L_9742612_SNP [dm6]	A	G	8.150e^-4	0.964	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15385678	2R_15385678_SNP [dm3] 2R_19498173_SNP [dm6]	A	G	8.161e^-4	0.964	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4366712	2L_4366712_SNP [dm3] 2L_4366712_SNP [dm6]	A	T	8.188e^-4	0.964	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	21125980	2L_21125980_SNP [dm3] 2L_21125980_SNP [dm6]	T	A	8.195e^-4	0.964	INTRON Nhe2
3R	18254244	3R_18254244_SNP [dm3] 3R_22428522_SNP [dm6]	G	A	8.196e^-4	0.964	INTRON CG13847
2L	19301943	2L_19301943_SNP [dm3] 2L_19301943_SNP [dm6]	G	A	8.206e^-4	0.964	DOWNSTREAM CG10750 INTERGENIC
X	17728278	X_17728278_DEL [dm3] X_17834245_DEL [dm6]	TCT	T	8.215e^-4	0.964	INTRON CG6398	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	5190920	3R_5190920_INS [dm3] 3R_9365198_INS [dm6]	A	AA	8.218e^-4	0.964	UPSTREAM CG8129 DOWNSTREAM CG18473 INTERGENIC
3R	23685211	3R_23685211_SNP [dm3] 3R_27859489_SNP [dm6]	T	C	8.222e^-4	0.964	INTRON CG34353
X	16001950	X_16001950_SNP [dm3] X_16107917_SNP [dm6]	G	A	8.269e^-4	0.964	INTERGENIC
2R	18042553	2R_18042553_SNP [dm3] 2R_22155048_SNP [dm6]	A	G	8.271e^-4	0.964	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	13539924	2L_13539924_SNP [dm3] 2L_13539924_SNP [dm6]	T	C	8.273e^-4	0.964	UPSTREAM CG16852 INTRON B4
2R	8778647	2R_8778647_SNP [dm3] 2R_12891142_SNP [dm6]	T	C	8.274e^-4	0.964	INTRON vg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4630521	2L_4630521_SNP [dm3] 2L_4630521_SNP [dm6]	A	T	8.283e^-4	0.964	INTERGENIC
3R	13440341	3R_13440341_SNP [dm3] 3R_17614619_SNP [dm6]	A	C	8.288e^-4	0.964	NON_SYNONYMOUS_CODING CG14327	TF binding site mE1_TFBS_HSA
3L	7065534	3L_7065534_SNP [dm3] 3L_7072434_SNP [dm6]	T	G	8.290e^-4	0.964	INTRON CG8641
2L	2741455	2L_2741455_SNP [dm3] 2L_2741455_SNP [dm6]	G	A	8.322e^-4	0.964	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11957689	3L_11957689_SNP [dm3] 3L_11964589_SNP [dm6]	G	T	8.333e^-4	0.964	INTRON prc	TF binding site mE1_TFBS_chinmo
2L	8754679	2L_8754679_SNP [dm3] 2L_8754679_SNP [dm6]	C	T	8.345e^-4	0.964	INTERGENIC
3L	18086342	3L_18086342_SNP [dm3] 3L_18093242_SNP [dm6]	T	C	8.356e^-4	0.964	INTRON CG13698
X	4919490	X_4919490_SNP [dm3] X_5025457_SNP [dm6]	T	A	8.360e^-4	0.964	INTRON CR44833
2L	3178281	2L_3178281_SNP [dm3] 2L_3178281_SNP [dm6]	T	A	8.361e^-4	0.964	INTRON CG34393
2L	3844623	2L_3844623_SNP [dm3] 2L_3844623_SNP [dm6]	G	C	8.372e^-4	0.964	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	17524600	2R_17524600_SNP [dm3] 2R_21637095_SNP [dm6]	C	T	8.380e^-4	0.964	SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19239878	X_19239878_DEL [dm3] X_19345845_DEL [dm6]	AATAAATAG	A	8.385e^-4	0.964	INTRON nAChRalpha7
3L	15301335	3L_15301335_SNP [dm3] 3L_15308235_SNP [dm6]	C	T	8.401e^-4	0.964	SYNONYMOUS_CODING CG7255
2L	11114293	2L_11114293_SNP [dm3] 2L_11114293_SNP [dm6]	C	T	8.402e^-4	0.964	SYNONYMOUS_CODING Gr32a	TF binding site mE1_TFBS_cad
2R	5984360	2R_5984360_SNP [dm3] 2R_10096855_SNP [dm6]	C	T	8.412e^-4	0.964	UPSTREAM Jra DOWNSTREAM CG2269 INTRON Jra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	5214017	2R_5214017_SNP [dm3] 2R_9326512_SNP [dm6]	A	G	8.417e^-4	0.964	INTRON CG13954 & 1 other
3R	22532712	3R_22532712_SNP [dm3] 3R_26706990_SNP [dm6]	T	C	8.418e^-4	0.964	INTRON amon
2L	18210161	2L_18210161_SNP [dm3] 2L_18210161_SNP [dm6]	A	T	8.433e^-4	0.964	UPSTREAM CG31802 INTRON CG42750
X	14219508	X_14219508_SNP [dm3] X_14325475_SNP [dm6]	G	C	8.434e^-4	0.964	INTRON dpr8
2L	10586464	2L_10586464_SNP [dm3] 2L_10586464_SNP [dm6]	T	C	8.451e^-4	0.964	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17649531	2L_17649531_DEL [dm3] 2L_17649531_DEL [dm6]	GC	G	8.455e^-4	0.964	UTR_3_PRIME CadN DOWNSTREAM CadN
2R	16111791	2R_16111791_SNP [dm3] 2R_20224286_SNP [dm6]	A	T	8.459e^-4	0.964	INTERGENIC
3L	9130633	3L_9130633_SNP [dm3] 3L_9137533_SNP [dm6]	A	G	8.476e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10070283	3L_10070283_SNP [dm3] 3L_10077183_SNP [dm6]	T	G	8.486e^-4	0.964	INTRON dpr6
3L	10070313	3L_10070313_SNP [dm3] 3L_10077213_SNP [dm6]	A	G	8.486e^-4	0.964	INTRON dpr6
2R	6997014	2R_6997014_SNP [dm3] 2R_11109509_SNP [dm6]	G	A	8.486e^-4	0.964	INTRON luna
3R	4412756	3R_4412756_INS [dm3] 3R_8587034_INS [dm6]	G	GTATG	8.500e^-4	0.964	INTRON 5-HT2B
2L	10727446	2L_10727446_SNP [dm3] 2L_10727446_SNP [dm6]	C	T	8.522e^-4	0.964	INTRON CG6431
3L	16269966	3L_16269966_SNP [dm3] 3L_16276866_SNP [dm6]	T	C	8.538e^-4	0.964	UPSTREAM CG13065 INTERGENIC
3R	3676778	3R_3676778_SNP [dm3] 3R_7851056_SNP [dm6]	C	T	8.556e^-4	0.964	INTRON CG34384	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15880188	X_15880188_SNP [dm3] X_15986155_SNP [dm6]	G	A	8.558e^-4	0.964	SYNONYMOUS_CODING CG9172 DOWNSTREAM CG8931 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3094537	3L_3094537_SNP [dm3] 3L_3094537_SNP [dm6]	C	T	8.568e^-4	0.964	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad
2R	15790614	2R_15790614_SNP [dm3] 2R_19903109_SNP [dm6]	T	C	8.584e^-4	0.964	INTERGENIC
X	12941133	X_12941133_SNP [dm3] X_13047100_SNP [dm6]	A	G	8.624e^-4	0.964	INTRON rad
2L	12084295	2L_12084295_SNP [dm3] 2L_12084295_SNP [dm6]	C	T	8.635e^-4	0.964	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22990644	3R_22990644_SNP [dm3] 3R_27164922_SNP [dm6]	G	A	8.640e^-4	0.964	UTR_3_PRIME CG34293 UPSTREAM spn-D DOWNSTREAM CG34293 INTRON ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med
3L	15888179	3L_15888179_SNP [dm3] 3L_15895079_SNP [dm6]	G	T	8.644e^-4	0.964	INTRON pHCl
3L	9207177	3L_9207177_SNP [dm3] 3L_9214077_SNP [dm6]	G	T	8.687e^-4	0.964	SYNONYMOUS_CODING CG4476	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24392269	3R_24392269_SNP [dm3] 3R_28566547_SNP [dm6]	G	A	8.694e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15456350	2R_15456350_SNP [dm3] 2R_19568845_SNP [dm6]	G	A	8.699e^-4	0.964	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6344034	2L_6344034_SNP [dm3] 2L_6344034_SNP [dm6]	A	G	8.708e^-4	0.964	INTRON Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
2R	1402564	2R_1402564_SNP [dm3] 2R_5515059_SNP [dm6]	C	A	8.717e^-4	0.964	INTRON CG30438
3R	21219904	3R_21219904_SNP [dm3] 3R_25394182_SNP [dm6]	T	C	8.736e^-4	0.964	INTRON Fur1
2L	9586122	2L_9586122_SNP [dm3] 2L_9586122_SNP [dm6]	C	A	8.738e^-4	0.964	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	9586149	2L_9586149_SNP [dm3] 2L_9586149_SNP [dm6]	A	T	8.738e^-4	0.964	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	4522187	3L_4522187_SNP [dm3] 3L_4522187_SNP [dm6]	T	A	8.751e^-4	0.964	INTRON Tie
2R	6931056	2R_6931056_SNP [dm3] 2R_11043551_SNP [dm6]	G	A	8.759e^-4	0.964	INTRON luna	TF binding site mE1_TFBS_cad
3R	22880922	3R_22880922_SNP [dm3] 3R_27055200_SNP [dm6]	C	T	8.772e^-4	0.964	INTRON RYa-R
2L	17516808	2L_17516808_SNP [dm3] 2L_17516808_SNP [dm6]	T	A	8.776e^-4	0.964	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	8.779e^-4	0.964	INTERGENIC
3L	6335144	3L_6335144_SNP [dm3] 3L_6342044_SNP [dm6]	G	A	8.781e^-4	0.964	INTRON CG13300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10453179	2R_10453179_SNP [dm3] 2R_14565674_SNP [dm6]	G	T	8.805e^-4	0.964	INTRON ttv
2R	10453180	2R_10453180_DEL [dm3] 2R_14565675_DEL [dm6]	GC	G	8.805e^-4	0.964	INTRON ttv
2L	13046650	2L_13046650_SNP [dm3] 2L_13046650_SNP [dm6]	A	C	8.820e^-4	0.964	INTRON CG9932
2L	4100132	2L_4100132_SNP [dm3] 2L_4100132_SNP [dm6]	T	C	8.820e^-4	0.964	INTRON ed	TF binding site mE1_TFBS_cad
2R	13880255	2R_13880255_DEL [dm3] 2R_17992750_DEL [dm6]	TCA	G	8.820e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA
2R	13880263	2R_13880263_SNP [dm3] 2R_17992758_SNP [dm6]	A	T	8.820e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880267	2R_13880267_SNP [dm3] 2R_17992762_SNP [dm6]	A	T	8.820e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13880268	2R_13880268_DEL [dm3] 2R_17992763_DEL [dm6]	GC	G	8.820e^-4	0.964	INTRON dpr13	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19939607	2R_19939607_SNP [dm3] 2R_24052084_SNP [dm6]	A	C	8.820e^-4	0.964	SYNONYMOUS_CODING sei DOWNSTREAM ppk29
X	20483473	X_20483473_SNP [dm3] X_20612446_SNP [dm6]	T	G	8.820e^-4	0.964	INTRON RunxA
3L	9130775	3L_9130775_INS [dm3] 3L_9137675_INS [dm6]	A	AA	8.822e^-4	0.964	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17590004	2L_17590004_SNP [dm3] 2L_17590004_SNP [dm6]	T	C	8.841e^-4	0.964	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	14608120	X_14608120_SNP [dm3] X_14714087_SNP [dm6]	T	G	8.852e^-4	0.964	INTRON NetB
X	14608131	X_14608131_DEL [dm3] X_14714098_DEL [dm6]	TTTATGAGAAATATGTACAT...	T	8.852e^-4	0.964	INTRON NetB
X	20460047	X_20460047_SNP [dm3] X_20589020_SNP [dm6]	A	T	8.860e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	20686808	X_20686808_SNP [dm3] X_20815781_SNP [dm6]	T	A	8.871e^-4	0.964	INTRON shakB
3L	4049159	3L_4049159_SNP [dm3] 3L_4049159_SNP [dm6]	A	G	8.878e^-4	0.964	INTRON CG1136
X	15125720	X_15125720_DEL [dm3] X_15231687_DEL [dm6]	AC	A	8.882e^-4	0.964	INTERGENIC
3L	707971	3L_707971_SNP [dm3] 3L_707971_SNP [dm6]	C	T	8.884e^-4	0.964	UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	19437057	X_19437057_SNP [dm3] X_19543024_SNP [dm6]	T	A	8.885e^-4	0.964	INTRON CG32532	TF binding site BDTNP1_TFBS_da
2L	12317124	2L_12317124_SNP [dm3] 2L_12317124_SNP [dm6]	T	A	8.885e^-4	0.964	UPSTREAM CR45283 EXON CR45283
2R	9516761	2R_9516761_SNP [dm3] 2R_13629256_SNP [dm6]	T	A	8.920e^-4	0.964	INTRON fas	TF binding site BDTNP1_TFBS_dl
X	16957147	X_16957147_SNP [dm3] X_17063114_SNP [dm6]	A	T	8.922e^-4	0.964	INTRON CG45002
2R	6891955	2R_6891955_SNP [dm3] 2R_11004450_SNP [dm6]	C	A	8.922e^-4	0.964	INTRON luna
3L	815385	3L_815385_SNP [dm3] 3L_815385_SNP [dm6]	G	C	8.953e^-4	0.964	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	815402	3L_815402_SNP [dm3] 3L_815402_SNP [dm6]	A	G	8.953e^-4	0.964	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4830681	2L_4830681_SNP [dm3] 2L_4830681_SNP [dm6]	T	C	8.955e^-4	0.964	UTR_5_PRIME CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	3086745	3L_3086745_SNP [dm3] 3L_3086745_SNP [dm6]	C	T	8.957e^-4	0.964	INTRON CG11486
2L	3221379	2L_3221379_SNP [dm3] 2L_3221379_SNP [dm6]	A	G	8.977e^-4	0.964	INTERGENIC
2R	12265002	2R_12265002_SNP [dm3] 2R_16377497_SNP [dm6]	C	G	8.988e^-4	0.964	INTERGENIC
3L	1907530	3L_1907530_SNP [dm3] 3L_1907530_SNP [dm6]	G	C	8.995e^-4	0.964	INTRON CG1887
3R	22182250	3R_22182250_SNP [dm3] 3R_26356528_SNP [dm6]	G	A	8.999e^-4	0.964	INTRON CG33970
X	9938169	X_9938169_SNP [dm3] X_10044136_SNP [dm6]	G	A	9.038e^-4	0.964	NON_SYNONYMOUS_CODING Cht6 DOWNSTREAM CR45185 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7008484	X_7008484_SNP [dm3] X_7114451_SNP [dm6]	T	A	9.046e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12100488	2R_12100488_SNP [dm3] 2R_16212983_SNP [dm6]	C	A	9.053e^-4	0.964	INTRON mrj	TF binding site mE1_TFBS_inv
2L	16013316	2L_16013316_SNP [dm3] 2L_16013316_SNP [dm6]	T	A	9.071e^-4	0.964	INTRON beat-Ic
2R	15681516	2R_15681516_SNP [dm3] 2R_19794011_SNP [dm6]	A	G	9.092e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_Kr
X	16039611	X_16039611_SNP [dm3] X_16145578_SNP [dm6]	T	C	9.099e^-4	0.964	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3L	12622118	3L_12622118_DEL [dm3] 3L_12629018_DEL [dm6]	AG	A	9.131e^-4	0.964	INTRON CR32111
3L	12622121	3L_12622121_DEL [dm3] 3L_12629021_DEL [dm6]	AAAAG	A	9.131e^-4	0.964	INTRON CR32111
3L	12622134	3L_12622134_DEL [dm3] 3L_12629034_DEL [dm6]	GCCAGA	G	9.131e^-4	0.964	INTRON CR32111
3L	12622147	3L_12622147_SNP [dm3] 3L_12629047_SNP [dm6]	C	G	9.131e^-4	0.964	INTRON CR32111
3L	11232550	3L_11232550_SNP [dm3] 3L_11239450_SNP [dm6]	A	T	9.172e^-4	0.964	INTERGENIC
3L	9066388	3L_9066388_SNP [dm3] 3L_9073288_SNP [dm6]	A	G	9.177e^-4	0.964	NON_SYNONYMOUS_CODING CG4942 UPSTREAM CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	15521776	3R_15521776_SNP [dm3] 3R_19696054_SNP [dm6]	C	T	9.185e^-4	0.964	INTRON Naam
3R	15825185	3R_15825185_SNP [dm3] 3R_19999463_SNP [dm6]	T	A	9.194e^-4	0.964	INTRON Hs6st
2L	17368553	2L_17368553_SNP [dm3] 2L_17368553_SNP [dm6]	C	A	9.217e^-4	0.964	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1442337	3L_1442337_SNP [dm3] 3L_1442337_SNP [dm6]	A	T	9.218e^-4	0.964	INTRON Ptp61F
3R	11004487	3R_11004487_SNP [dm3] 3R_15178765_SNP [dm6]	T	C	9.226e^-4	0.964	INTRON Gyc88E & 1 other
3R	5996813	3R_5996813_SNP [dm3] 3R_10171091_SNP [dm6]	T	G	9.233e^-4	0.964	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13559175	2R_13559175_SNP [dm3] 2R_17671670_SNP [dm6]	A	G	9.236e^-4	0.964	SYNONYMOUS_CODING P32 DOWNSTREAM CG30109 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8733844	3L_8733844_SNP [dm3] 3L_8740744_SNP [dm6]	G	T	9.249e^-4	0.964	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16571186	X_16571186_SNP [dm3] X_16677153_SNP [dm6]	G	A	9.249e^-4	0.964	UPSTREAM CG13012 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	4790555	3L_4790555_SNP [dm3] 3L_4790555_SNP [dm6]	C	G	9.265e^-4	0.964	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	7340071	2L_7340071_DEL [dm3] 2L_7340071_DEL [dm6]	CCGAATAGTGGGACATCTTT...	C	9.265e^-4	0.964	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22260719	3R_22260719_SNP [dm3] 3R_26434997_SNP [dm6]	C	A	9.287e^-4	0.964	INTERGENIC
3R	24446663	3R_24446663_SNP [dm3] 3R_28620941_SNP [dm6]	C	T	9.289e^-4	0.964	INTRON CG10011	TF binding site BDTNP1_TFBS_twi
X	14227294	X_14227294_SNP [dm3] X_14333261_SNP [dm6]	C	T	9.291e^-4	0.964	INTRON dpr8
3L	6292582	3L_6292582_SNP [dm3] 3L_6299482_SNP [dm6]	T	A	9.298e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18543124	2R_18543124_SNP [dm3] 2R_22655619_SNP [dm6]	G	A	9.317e^-4	0.964	UTR_3_PRIME CG43326 & 1 other UPSTREAM CR45268 & 1 other DOWNSTREAM CG43325	TF binding site mE1_TFBS_cad
3L	16745181	3L_16745181_SNP [dm3] 3L_16752081_SNP [dm6]	T	G	9.317e^-4	0.964	INTERGENIC
2L	17591917	2L_17591917_SNP [dm3] 2L_17591917_SNP [dm6]	C	T	9.327e^-4	0.964	SYNONYMOUS_CODING CG6870 UPSTREAM Sytalpha DOWNSTREAM Oli
3R	10358462	3R_10358462_SNP [dm3] 3R_14532740_SNP [dm6]	A	G	9.362e^-4	0.964	INTRON Pde6
3R	27002133	3R_27002133_SNP [dm3] 3R_31176411_SNP [dm6]	A	C	9.388e^-4	0.964	INTRON Gycbeta100B
3R	27002334	3R_27002334_SNP [dm3] 3R_31176612_SNP [dm6]	C	T	9.388e^-4	0.964	INTRON Gycbeta100B
2R	10966578	2R_10966578_SNP [dm3] 2R_15079073_SNP [dm6]	T	C	9.399e^-4	0.964	INTERGENIC
3L	1422988	3L_1422988_SNP [dm3] 3L_1422988_SNP [dm6]	A	G	9.400e^-4	0.964	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25234771	3R_25234771_INS [dm3] 3R_29409049_INS [dm6]	T	TTAAAGCGGCT...	9.400e^-4	0.964	INTRON Ptp99A
X	5230491	X_5230491_SNP [dm3] X_5336458_SNP [dm6]	G	T	9.401e^-4	0.964	INTERGENIC
2L	8050107	2L_8050107_SNP [dm3] 2L_8050107_SNP [dm6]	A	G	9.412e^-4	0.964	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10630882	2L_10630882_SNP [dm3] 2L_10630882_SNP [dm6]	A	G	9.415e^-4	0.964	SYNONYMOUS_CODING CG7329
2L	10630900	2L_10630900_SNP [dm3] 2L_10630900_SNP [dm6]	T	C	9.415e^-4	0.964	SYNONYMOUS_CODING CG7329
3L	17984001	3L_17984001_SNP [dm3] 3L_17990901_SNP [dm6]	G	T	9.420e^-4	0.964	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	9417714	2L_9417714_SNP [dm3] 2L_9417714_SNP [dm6]	C	A	9.433e^-4	0.964	INTRON Mco1
X	6520669	X_6520669_INS [dm3] X_6626636_INS [dm6]	T	TG	9.434e^-4	0.964	INTRON pigs
2L	11707176	2L_11707176_SNP [dm3] 2L_11707176_SNP [dm6]	C	T	9.434e^-4	0.964	INTERGENIC
X	14228810	X_14228810_SNP [dm3] X_14334777_SNP [dm6]	G	C	9.447e^-4	0.964	INTRON dpr8
2L	18315710	2L_18315710_SNP [dm3] 2L_18315710_SNP [dm6]	G	A	9.453e^-4	0.964	INTERGENIC
2L	17944182	2L_17944182_SNP [dm3] 2L_17944182_SNP [dm6]	C	G	9.456e^-4	0.964	INTERGENIC
X	14852672	X_14852672_SNP [dm3] X_14958639_SNP [dm6]	G	A	9.460e^-4	0.964	INTRON eag
2L	17393678	2L_17393678_SNP [dm3] 2L_17393678_SNP [dm6]	A	G	9.463e^-4	0.964	INTRON CLIP-190
3R	4593948	3R_4593948_SNP [dm3] 3R_8768226_SNP [dm6]	T	C	9.467e^-4	0.964	UPSTREAM CG11768 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	9206045	2L_9206045_SNP [dm3] 2L_9206045_SNP [dm6]	A	C	9.478e^-4	0.964	INTRON tai	TF binding site BDTNP1_TFBS_dl
3R	3190875	3R_3190875_SNP [dm3] 3R_7365153_SNP [dm6]	A	T	9.489e^-4	0.964	UPSTREAM Mst84Dc & 1 other DOWNSTREAM Mst84Db & 1 other INTERGENIC
3L	12313014	3L_12313014_SNP [dm3] 3L_12319914_SNP [dm6]	T	C	9.489e^-4	0.964	INTERGENIC
2L	4417025	2L_4417025_SNP [dm3] 2L_4417025_SNP [dm6]	T	C	9.492e^-4	0.964	INTRON CG15431	TF binding site mE1_TFBS_chinmo

By genomic position
Variant impact
Gene name

Mating phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results