DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.179e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.01550
In_2L_t	0.08658
In_3R_P	0.02320

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.1156	0.047

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2523 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12949111	X_12949111_SNP [dm3] X_13055078_SNP [dm6]	G	T	3.718e^-7	0.651	DOWNSTREAM CR44840 INTRON rad & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2425914	2L_2425914_SNP [dm3] 2L_2425914_SNP [dm6]	A	G	1.159e^-6	0.651	DOWNSTREAM CG44139 INTERGENIC
3R	18743508	3R_18743508_SNP [dm3] 3R_22917786_SNP [dm6]	C	A	1.850e^-6	0.651	INTRON klg
3L	10745981	3L_10745981_SNP [dm3] 3L_10752881_SNP [dm6]	G	T	2.145e^-6	0.651	INTERGENIC
2L	8999883	2L_8999883_SNP [dm3] 2L_8999883_SNP [dm6]	T	G	3.296e^-6	0.651	DOWNSTREAM Try29F INTERGENIC
3L	884387	3L_884387_SNP [dm3] 3L_884387_SNP [dm6]	C	A	3.309e^-6	0.651	INTRON CG32479
3L	9579486	3L_9579486_SNP [dm3] 3L_9586386_SNP [dm6]	A	G	3.706e^-6	0.651	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9578638	3L_9578638_SNP [dm3] 3L_9585538_SNP [dm6]	A	T	3.750e^-6	0.651	INTRON CG42673
X	5176251	X_5176251_SNP [dm3] X_5282218_SNP [dm6]	A	T	4.165e^-6	0.651	INTERGENIC
3L	3178846	3L_3178846_SNP [dm3] 3L_3178846_SNP [dm6]	T	A	4.232e^-6	0.651	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8999866	2L_8999866_DEL [dm3] 2L_8999866_DEL [dm6]	AG	T	4.944e^-6	0.651	DOWNSTREAM Try29F INTERGENIC
3L	9579505	3L_9579505_SNP [dm3] 3L_9586405_SNP [dm6]	C	T	5.078e^-6	0.651	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7228237	2L_7228237_SNP [dm3] 2L_7228237_SNP [dm6]	T	A	6.565e^-6	0.651	NON_SYNONYMOUS_CODING CG43799 INTRON Ndae1
2L	10982552	2L_10982552_SNP [dm3] 2L_10982552_SNP [dm6]	A	G	7.182e^-6	0.651	UTR_3_PRIME piwi DOWNSTREAM SCAR
2L	8999898	2L_8999898_SNP [dm3] 2L_8999898_SNP [dm6]	C	A	7.251e^-6	0.651	DOWNSTREAM Try29F INTERGENIC
3L	16993476	3L_16993476_SNP [dm3] 3L_17000376_SNP [dm6]	T	C	7.345e^-6	0.651	INTRON CG3764
2R	5849707	2R_5849707_SNP [dm3] 2R_9962202_SNP [dm6]	A	G	7.723e^-6	0.651	INTRON Pal1	TF binding site mE1_TFBS_cad
2R	11101785	2R_11101785_INS [dm3] 2R_15214280_INS [dm6]	T	TT	7.740e^-6	0.651	UTR_3_PRIME CG8093 UPSTREAM row	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9526702	3L_9526702_SNP [dm3] 3L_9533602_SNP [dm6]	G	A	7.861e^-6	0.651	INTERGENIC
3L	3178662	3L_3178662_SNP [dm3] 3L_3178662_SNP [dm6]	C	A	8.319e^-6	0.651	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8472669	3L_8472669_SNP [dm3] 3L_8479569_SNP [dm6]	C	A	8.332e^-6	0.651	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	19883202	X_19883202_SNP [dm3] X_19989169_SNP [dm6]	A	C	8.792e^-6	0.651	INTERGENIC
3L	3178812	3L_3178812_INS [dm3] 3L_3178812_INS [dm6]	G	AAAAAA	9.023e^-6	0.651	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	7718463	X_7718463_SNP [dm3] X_7824430_SNP [dm6]	G	A	9.437e^-6	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8999857	2L_8999857_SNP [dm3] 2L_8999857_SNP [dm6]	A	C	9.502e^-6	0.651	DOWNSTREAM Try29F INTERGENIC
2L	8999900	2L_8999900_SNP [dm3] 2L_8999900_SNP [dm6]	T	C	9.718e^-6	0.651	DOWNSTREAM Try29F INTERGENIC
X	21874197	X_21874197_DEL [dm3] X_22472361_DEL [dm6]	AA	A	1.018e^-5	0.651	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	3179317	3L_3179317_SNP [dm3] 3L_3179317_SNP [dm6]	C	T	1.048e^-5	0.651	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9372721	3L_9372721_SNP [dm3] 3L_9379621_SNP [dm6]	C	T	1.080e^-5	0.651	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1438120	2L_1438120_SNP [dm3] 2L_1438120_SNP [dm6]	A	G	1.128e^-5	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	10456662	2L_10456662_DEL [dm3] 2L_10456662_DEL [dm6]	GGGAAAAATGTTCTAGACCA...	G	1.134e^-5	0.651	UPSTREAM CG5322 & 1 other INTRON CG5322
X	3518956	X_3518956_SNP [dm3] X_3624923_SNP [dm6]	G	A	1.195e^-5	0.651	INTRON AstA-R1
2R	2869800	2R_2869800_SNP [dm3] 2R_6982295_SNP [dm6]	C	T	1.223e^-5	0.651	SYNONYMOUS_CODING CG30156 INTRON vimar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	900190	2L_900190_SNP [dm3] 2L_900190_SNP [dm6]	A	C	1.296e^-5	0.651	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21016515	3R_21016515_SNP [dm3] 3R_25190793_SNP [dm6]	C	T	1.300e^-5	0.651	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3012750	2L_3012750_SNP [dm3] 2L_3012750_SNP [dm6]	C	T	1.354e^-5	0.651	INTRON CG17265	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21939767	2L_21939767_SNP [dm3] 2L_21939767_SNP [dm6]	C	G	1.430e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9705125	2R_9705125_SNP [dm3] 2R_13817620_SNP [dm6]	C	T	1.432e^-5	0.651	INTRON stj
3L	4013531	3L_4013531_SNP [dm3] 3L_4013531_SNP [dm6]	T	G	1.435e^-5	0.651	INTERGENIC
3L	8468934	3L_8468934_SNP [dm3] 3L_8475834_SNP [dm6]	T	A	1.436e^-5	0.651	NON_SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19534640	2R_19534640_SNP [dm3] 2R_23647117_SNP [dm6]	T	A	1.457e^-5	0.651	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	12463256	X_12463256_SNP [dm3] X_12569223_SNP [dm6]	T	A	1.529e^-5	0.651	UTR_3_PRIME CG11138 UPSTREAM CG43921 DOWNSTREAM CG11138
2R	4454506	2R_4454506_SNP [dm3] 2R_8567001_SNP [dm6]	G	C	1.544e^-5	0.651	UTR_5_PRIME Cyp6a14
2R	2868456	2R_2868456_SNP [dm3] 2R_6980951_SNP [dm6]	G	T	1.558e^-5	0.651	DOWNSTREAM CR44170 & 1 other INTRON vimar EXON CR44171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14370664	2R_14370664_SNP [dm3] 2R_18483159_SNP [dm6]	T	C	1.651e^-5	0.651	INTRON CG30116
3L	7961614	3L_7961614_SNP [dm3] 3L_7968514_SNP [dm6]	G	A	1.686e^-5	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11874812	3R_11874812_SNP [dm3] 3R_16049090_SNP [dm6]	A	T	1.690e^-5	0.651	UPSTREAM CG5013 INTRON ird5 EXON CR45212	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
2R	13859845	2R_13859845_SNP [dm3] 2R_17972340_SNP [dm6]	C	G	1.700e^-5	0.651	INTERGENIC
3L	3179264	3L_3179264_SNP [dm3] 3L_3179264_SNP [dm6]	A	G	1.746e^-5	0.651	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1079123	2L_1079123_SNP [dm3] 2L_1079123_SNP [dm6]	C	T	1.794e^-5	0.651	SPLICE_SITE_REGION ast SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
X	12949219	X_12949219_SNP [dm3] X_13055186_SNP [dm6]	T	C	1.839e^-5	0.651	NON_SYNONYMOUS_CODING CG12715 DOWNSTREAM CR44840 INTRON rad	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2703887	X_2703887_DEL [dm3] X_2809854_DEL [dm6]	GG	G	1.925e^-5	0.651	UPSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14662671	2L_14662671_SNP [dm3] 2L_14662671_SNP [dm6]	T	A	1.935e^-5	0.651	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	7718460	X_7718460_SNP [dm3] X_7824427_SNP [dm6]	C	T	1.949e^-5	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25610363	3R_25610363_SNP [dm3] 3R_29784641_SNP [dm6]	G	T	1.954e^-5	0.651	INTRON kay
3R	20980505	3R_20980505_SNP [dm3] 3R_25154783_SNP [dm6]	G	A	1.972e^-5	0.651	INTERGENIC
2L	2435363	2L_2435363_SNP [dm3] 2L_2435363_SNP [dm6]	G	A	1.979e^-5	0.651	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	3180439	3L_3180439_SNP [dm3] 3L_3180439_SNP [dm6]	T	C	2.206e^-5	0.687	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8999903	2L_8999903_SNP [dm3] 2L_8999903_SNP [dm6]	G	A	2.276e^-5	0.687	DOWNSTREAM Try29F INTERGENIC
2R	9349307	2R_9349307_SNP [dm3] 2R_13461802_SNP [dm6]	C	T	2.381e^-5	0.687	INTRON arr	TF binding site mE1_TFBS_chinmo
3R	13928241	3R_13928241_SNP [dm3] 3R_18102519_SNP [dm6]	T	C	2.395e^-5	0.687	INTRON sr
X	14550487	X_14550487_SNP [dm3] X_14656454_SNP [dm6]	A	C	2.406e^-5	0.687	INTERGENIC
3L	14069263	3L_14069263_SNP [dm3] 3L_14076163_SNP [dm6]	T	C	2.420e^-5	0.687	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13376701	2L_13376701_SNP [dm3] 2L_13376701_SNP [dm6]	T	G	2.442e^-5	0.687	UTR_3_PRIME CG9302 DOWNSTREAM CG6565
2L	13431312	2L_13431312_SNP [dm3] 2L_13431312_SNP [dm6]	T	C	2.451e^-5	0.687	INTRON CG42784
2L	1436380	2L_1436380_SNP [dm3] 2L_1436380_SNP [dm6]	C	T	2.474e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12333476	2R_12333476_SNP [dm3] 2R_16445971_SNP [dm6]	A	G	2.478e^-5	0.687	UPSTREAM CG15925 INTERGENIC
2R	865972	2R_865972_SNP [dm3] 2R_4978467_SNP [dm6]	C	G	2.490e^-5	0.687	INTRON Ir41a
3R	5156249	3R_5156249_SNP [dm3] 3R_9330527_SNP [dm6]	A	G	2.661e^-5	0.695	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2R	6152623	2R_6152623_SNP [dm3] 2R_10265118_SNP [dm6]	C	T	2.724e^-5	0.695	UTR_5_PRIME CG12910 UPSTREAM CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11874732	3R_11874732_SNP [dm3] 3R_16049010_SNP [dm6]	A	G	2.766e^-5	0.695	UPSTREAM CG5013 DOWNSTREAM CR45212 INTRON ird5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	7961585	3L_7961585_SNP [dm3] 3L_7968485_SNP [dm6]	C	A	2.897e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	880090	2L_880090_SNP [dm3] 2L_880090_SNP [dm6]	A	G	2.905e^-5	0.695	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
X	8769077	X_8769077_SNP [dm3] X_8875044_SNP [dm6]	C	T	2.924e^-5	0.695	INTRON Moe	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2025383	2L_2025383_SNP [dm3] 2L_2025383_SNP [dm6]	G	C	2.981e^-5	0.695	INTRON CG4238
3L	12674677	3L_12674677_SNP [dm3] 3L_12681577_SNP [dm6]	T	G	3.071e^-5	0.695	INTERGENIC
2R	8949103	2R_8949103_SNP [dm3] 2R_13061598_SNP [dm6]	T	C	3.074e^-5	0.695	INTRON Drl-2
2L	14662688	2L_14662688_SNP [dm3] 2L_14662688_SNP [dm6]	T	C	3.075e^-5	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8980845	2L_8980845_SNP [dm3] 2L_8980845_SNP [dm6]	G	A	3.082e^-5	0.695	INTRON CG13101 & 1 other
X	12170120	X_12170120_SNP [dm3] X_12276087_SNP [dm6]	A	G	3.123e^-5	0.695	DOWNSTREAM CG45603 INTRON Ten-a
2L	10455715	2L_10455715_SNP [dm3] 2L_10455715_SNP [dm6]	G	A	3.232e^-5	0.695	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2874589	2R_2874589_SNP [dm3] 2R_6987084_SNP [dm6]	G	T	3.518e^-5	0.695	INTRON CG17002	TF binding site mE1_TFBS_cad
3R	5156291	3R_5156291_SNP [dm3] 3R_9330569_SNP [dm6]	T	C	3.540e^-5	0.695	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3R	25784573	3R_25784573_SNP [dm3] 3R_29958851_SNP [dm6]	C	T	3.576e^-5	0.695	INTRON TkR99D
3L	2518216	3L_2518216_SNP [dm3] 3L_2518216_SNP [dm6]	A	T	3.672e^-5	0.695	INTRON Spn & 1 other
X	4620997	X_4620997_SNP [dm3] X_4726964_SNP [dm6]	A	G	3.830e^-5	0.695	NON_SYNONYMOUS_CODING Proc-R
3R	26079337	3R_26079337_SNP [dm3] 3R_30253615_SNP [dm6]	C	T	3.852e^-5	0.695	DOWNSTREAM CG9682 INTRON CG18404
2R	9705497	2R_9705497_SNP [dm3] 2R_13817992_SNP [dm6]	G	A	3.864e^-5	0.695	UTR_3_PRIME stj
3L	8080844	3L_8080844_SNP [dm3] 3L_8087744_SNP [dm6]	C	T	3.907e^-5	0.695	UTR_3_PRIME CG7565 INTRON Ect4
3L	4783084	3L_4783084_SNP [dm3] 3L_4783084_SNP [dm6]	A	T	3.909e^-5	0.695	INTRON RhoGEF64C
2L	2435366	2L_2435366_DEL [dm3] 2L_2435366_DEL [dm6]	ACTTGTA	A	4.023e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	20980559	3R_20980559_DEL [dm3] 3R_25154837_DEL [dm6]	AA	C	4.174e^-5	0.695	INTERGENIC
2L	2435985	2L_2435985_SNP [dm3] 2L_2435985_SNP [dm6]	T	A	4.214e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
X	21282426	X_21282426_SNP [dm3] X_21411399_SNP [dm6]	G	A	4.238e^-5	0.695	UPSTREAM CR45003 INTERGENIC
2L	14662665	2L_14662665_SNP [dm3] 2L_14662665_SNP [dm6]	T	C	4.239e^-5	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	916144	2L_916144_SNP [dm3] 2L_916144_SNP [dm6]	C	T	4.263e^-5	0.695	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	8964882	2R_8964882_SNP [dm3] 2R_13077377_SNP [dm6]	G	A	4.298e^-5	0.695	INTRON Drl-2	TF binding site mE1_TFBS_cad
3L	5474338	3L_5474338_SNP [dm3] 3L_5481238_SNP [dm6]	A	G	4.534e^-5	0.695	NON_SYNONYMOUS_CODING CG4835
2L	3200459	2L_3200459_SNP [dm3] 2L_3200459_SNP [dm6]	A	G	4.553e^-5	0.695	UPSTREAM CG34393 INTRON CG34393
3R	9722988	3R_9722988_SNP [dm3] 3R_13897266_SNP [dm6]	C	T	4.732e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	4502649	2R_4502649_SNP [dm3] 2R_8615144_SNP [dm6]	A	G	4.740e^-5	0.695	UTR_5_PRIME Cirl UPSTREAM CG8642	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
X	21874282	X_21874282_SNP [dm3] X_22472446_SNP [dm6]	A	G	4.743e^-5	0.695	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3180435	3L_3180435_SNP [dm3] 3L_3180435_SNP [dm6]	C	T	4.845e^-5	0.695	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11153493	3L_11153493_SNP [dm3] 3L_11160393_SNP [dm6]	T	C	4.862e^-5	0.695	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12209175	2L_12209175_SNP [dm3] 2L_12209175_SNP [dm6]	G	A	5.053e^-5	0.695	SYNONYMOUS_CODING CG31759 INTRON aret
2R	2880136	2R_2880136_SNP [dm3] 2R_6992631_SNP [dm6]	C	A	5.054e^-5	0.695	UPSTREAM Tsp42Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13193950	2R_13193950_SNP [dm3] 2R_17306445_SNP [dm6]	G	A	5.055e^-5	0.695	DOWNSTREAM CR43661 INTRON mbl
X	14528006	X_14528006_SNP [dm3] X_14633973_SNP [dm6]	A	T	5.142e^-5	0.695	INTRON NetA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1033364	3L_1033364_MNP [dm3] 3L_1033364_MNP [dm6]	GCT	CTG	5.204e^-5	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
2R	14365643	2R_14365643_SNP [dm3] 2R_18478138_SNP [dm6]	T	C	5.212e^-5	0.695	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16920101	2L_16920101_SNP [dm3] 2L_16920101_SNP [dm6]	C	G	5.237e^-5	0.695	INTERGENIC
2L	1069588	2L_1069588_SNP [dm3] 2L_1069588_SNP [dm6]	G	T	5.248e^-5	0.695	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13441335	2L_13441335_SNP [dm3] 2L_13441335_SNP [dm6]	T	C	5.361e^-5	0.695	INTRON CG42784 EXON CR45683
3L	1080253	3L_1080253_SNP [dm3] 3L_1080253_SNP [dm6]	A	G	5.378e^-5	0.695	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21874926	X_21874926_SNP [dm3] X_22473090_SNP [dm6]	T	C	5.398e^-5	0.695	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	1607048	2L_1607048_DEL [dm3] 2L_1607048_DEL [dm6]	GCA	G	5.439e^-5	0.695	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9934354	2L_9934354_SNP [dm3] 2L_9934354_SNP [dm6]	C	A	5.463e^-5	0.695	DOWNSTREAM CG31712 INTERGENIC
2R	17616531	2R_17616531_SNP [dm3] 2R_21729026_SNP [dm6]	A	T	5.468e^-5	0.695	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8792746	2R_8792746_SNP [dm3] 2R_12905241_SNP [dm6]	A	C	5.540e^-5	0.695	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10745229	3L_10745229_SNP [dm3] 3L_10752129_SNP [dm6]	G	A	5.620e^-5	0.695	INTERGENIC
2R	8801090	2R_8801090_SNP [dm3] 2R_12913585_SNP [dm6]	A	C	5.649e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1436393	2L_1436393_SNP [dm3] 2L_1436393_SNP [dm6]	A	C	5.655e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21951288	2L_21951288_SNP [dm3] 2L_21951288_SNP [dm6]	C	T	5.728e^-5	0.695	UPSTREAM CR45704 DOWNSTREAM CR45703 INTERGENIC
3L	11396210	3L_11396210_SNP [dm3] 3L_11403110_SNP [dm6]	C	A	5.816e^-5	0.695	INTERGENIC
2L	887875	2L_887875_SNP [dm3] 2L_887875_SNP [dm6]	C	T	5.977e^-5	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2435416	2L_2435416_SNP [dm3] 2L_2435416_SNP [dm6]	A	T	5.983e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	3180264	3L_3180264_SNP [dm3] 3L_3180264_SNP [dm6]	C	T	6.014e^-5	0.695	SYNONYMOUS_CODING Girdin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	2421553	2L_2421553_SNP [dm3] 2L_2421553_SNP [dm6]	G	A	6.016e^-5	0.695	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4752721	3L_4752721_SNP [dm3] 3L_4752721_SNP [dm6]	G	A	6.064e^-5	0.695	SYNONYMOUS_CODING CG12493 INTRON RhoGEF64C
2L	16679261	2L_16679261_SNP [dm3] 2L_16679261_SNP [dm6]	T	A	6.080e^-5	0.695	UTR_3_PRIME her UPSTREAM grp & 1 other DOWNSTREAM mir-2497
2R	11078806	2R_11078806_SNP [dm3] 2R_15191301_SNP [dm6]	C	T	6.242e^-5	0.695	INTERGENIC
3L	16072193	3L_16072193_SNP [dm3] 3L_16079093_SNP [dm6]	A	G	6.369e^-5	0.695	UTR_3_PRIME Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	18392529	2R_18392529_INS [dm3] 2R_22505024_INS [dm6]	A	AC	6.404e^-5	0.695	INTRON px	TF binding site BDTNP1_TFBS_twi
X	18473052	X_18473052_SNP [dm3] X_18579019_SNP [dm6]	G	T	6.411e^-5	0.695	INTERGENIC
3L	5834121	3L_5834121_SNP [dm3] 3L_5841021_SNP [dm6]	A	T	6.440e^-5	0.695	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6152355	2R_6152355_SNP [dm3] 2R_10264850_SNP [dm6]	G	C	6.454e^-5	0.695	UPSTREAM CG12910 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	22096002	2L_22096002_SNP [dm3] 2L_22096002_SNP [dm6]	T	C	6.530e^-5	0.695	INTERGENIC
3L	1367900	3L_1367900_DEL [dm3] 3L_1367900_DEL [dm6]	ATGCCTATA	A	6.554e^-5	0.695	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9322482	2L_9322482_SNP [dm3] 2L_9322482_SNP [dm6]	T	C	6.614e^-5	0.695	INTERGENIC
2R	1011300	2R_1011300_SNP [dm3] 2R_5123795_SNP [dm6]	T	C	6.652e^-5	0.695	INTRON gus	TF binding site BDTNP1_TFBS_dl
2L	5483133	2L_5483133_SNP [dm3] 2L_5483133_SNP [dm6]	G	A	6.735e^-5	0.695	INTERGENIC
3R	23718310	3R_23718310_SNP [dm3] 3R_27892588_SNP [dm6]	A	G	6.737e^-5	0.695	INTRON CG34353
2R	17309776	2R_17309776_SNP [dm3] 2R_21422271_SNP [dm6]	G	C	6.764e^-5	0.695	INTRON Sdc
3L	1033410	3L_1033410_SNP [dm3] 3L_1033410_SNP [dm6]	A	G	6.826e^-5	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2435385	2L_2435385_SNP [dm3] 2L_2435385_SNP [dm6]	A	T	6.896e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	20198249	X_20198249_SNP [dm3] X_20327222_SNP [dm6]	G	A	6.942e^-5	0.695	UPSTREAM CG1631 INTRON CG1504
2L	22079459	2L_22079459_SNP [dm3] 2L_22079459_SNP [dm6]	A	T	6.977e^-5	0.695	UPSTREAM ttm3 INTERGENIC
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	7.033e^-5	0.695	INTERGENIC
2L	14662658	2L_14662658_SNP [dm3] 2L_14662658_SNP [dm6]	T	G	7.049e^-5	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	2703884	X_2703884_SNP [dm3] X_2809851_SNP [dm6]	C	A	7.051e^-5	0.695	UPSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12462858	X_12462858_SNP [dm3] X_12568825_SNP [dm6]	G	T	7.099e^-5	0.695	UPSTREAM CG43921 DOWNSTREAM CG11138 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10449825	3L_10449825_SNP [dm3] 3L_10456725_SNP [dm6]	G	C	7.146e^-5	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1033412	3L_1033412_DEL [dm3] 3L_1033412_DEL [dm6]	ATTAAGAAT	C	7.172e^-5	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9977735	2R_9977735_SNP [dm3] 2R_14090230_SNP [dm6]	G	C	7.212e^-5	0.695	UPSTREAM CG42287 & 1 other INTRON Prosap
2L	2435442	2L_2435442_SNP [dm3] 2L_2435442_SNP [dm6]	G	A	7.224e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	8733166	2R_8733166_SNP [dm3] 2R_12845661_SNP [dm6]	A	T	7.262e^-5	0.695	SYNONYMOUS_CODING CG17575 DOWNSTREAM Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20322141	2L_20322141_SNP [dm3] 2L_20322141_SNP [dm6]	C	G	7.273e^-5	0.695	INTRON spir	TF binding site mE1_TFBS_cad
3L	3209555	3L_3209555_SNP [dm3] 3L_3209555_SNP [dm6]	C	A	7.321e^-5	0.695	NON_SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
2R	12274328	2R_12274328_SNP [dm3] 2R_16386823_SNP [dm6]	C	T	7.322e^-5	0.695	INTRON Sema-2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	1606839	2L_1606839_SNP [dm3] 2L_1606839_SNP [dm6]	A	G	7.362e^-5	0.695	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo
X	5969052	X_5969052_SNP [dm3] X_6075019_SNP [dm6]	T	G	7.392e^-5	0.695	UPSTREAM Tsp5D INTERGENIC
2L	1045832	2L_1045832_SNP [dm3] 2L_1045832_SNP [dm6]	G	A	7.501e^-5	0.695	INTRON IA-2
3R	9985696	3R_9985696_SNP [dm3] 3R_14159974_SNP [dm6]	G	A	7.533e^-5	0.695	NON_SYNONYMOUS_CODING CG31327
2L	9331749	2L_9331749_SNP [dm3] 2L_9331749_SNP [dm6]	G	T	7.585e^-5	0.695	UTR_3_PRIME Cks30A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1080264	3L_1080264_SNP [dm3] 3L_1080264_SNP [dm6]	C	T	7.601e^-5	0.695	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12209178	2L_12209178_SNP [dm3] 2L_12209178_SNP [dm6]	A	G	7.604e^-5	0.695	SYNONYMOUS_CODING CG31759 INTRON aret
2L	916147	2L_916147_SNP [dm3] 2L_916147_SNP [dm6]	C	T	7.612e^-5	0.695	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	780182	2R_780182_SNP [dm3] 2R_4892677_SNP [dm6]	A	G	7.618e^-5	0.695	INTERGENIC	transposable element FlyBase
3L	1960036	3L_1960036_SNP [dm3] 3L_1960036_SNP [dm6]	G	C	7.624e^-5	0.695	NON_SYNONYMOUS_CODING mv
2L	11169321	2L_11169321_SNP [dm3] 2L_11169321_SNP [dm6]	T	C	7.653e^-5	0.695	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
X	18473049	X_18473049_SNP [dm3] X_18579016_SNP [dm6]	C	T	7.663e^-5	0.695	INTERGENIC
2L	12209160	2L_12209160_SNP [dm3] 2L_12209160_SNP [dm6]	C	T	7.708e^-5	0.695	SYNONYMOUS_CODING CG31759 INTRON aret
X	21874180	X_21874180_SNP [dm3] X_22472344_SNP [dm6]	G	C	7.770e^-5	0.695	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	566566	2R_566566_SNP [dm3] 2R_4679061_SNP [dm6]	T	A	7.776e^-5	0.695	INTERGENIC
2R	10507542	2R_10507542_SNP [dm3] 2R_14620037_SNP [dm6]	A	G	7.788e^-5	0.695	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12846502	3L_12846502_SNP [dm3] 3L_12853402_SNP [dm6]	T	C	7.817e^-5	0.695	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2L	11533669	2L_11533669_SNP [dm3] 2L_11533669_SNP [dm6]	T	C	7.945e^-5	0.695	SYNONYMOUS_CODING CG34162 EXON CR42743
3L	6953676	3L_6953676_SNP [dm3] 3L_6960576_SNP [dm6]	A	T	7.954e^-5	0.695	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9977741	2R_9977741_SNP [dm3] 2R_14090236_SNP [dm6]	G	A	7.973e^-5	0.695	UPSTREAM CG42287 & 1 other INTRON Prosap
2R	14192198	2R_14192198_SNP [dm3] 2R_18304693_SNP [dm6]	C	T	8.059e^-5	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2426767	2L_2426767_SNP [dm3] 2L_2426767_SNP [dm6]	A	G	8.119e^-5	0.695	DOWNSTREAM CR44912 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	2875763	2R_2875763_SNP [dm3] 2R_6988258_SNP [dm6]	G	C	8.249e^-5	0.695	NON_SYNONYMOUS_CODING CG17002	TF binding site mE1_TFBS_cad
X	2280088	X_2280088_SNP [dm3] X_2386055_SNP [dm6]	G	A	8.253e^-5	0.695	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8239919	2R_8239919_SNP [dm3] 2R_12352414_SNP [dm6]	T	C	8.264e^-5	0.695	SYNONYMOUS_CODING CG30047	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	14745823	2L_14745823_SNP [dm3] 2L_14745823_SNP [dm6]	A	G	8.287e^-5	0.695	UPSTREAM CR45459 & 2 others DOWNSTREAM CR45458 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6142795	2R_6142795_SNP [dm3] 2R_10255290_SNP [dm6]	T	A	8.308e^-5	0.695	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
2L	2435462	2L_2435462_DEL [dm3] 2L_2435462_DEL [dm6]	AAATT	A	8.321e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
X	15400970	X_15400970_SNP [dm3] X_15506937_SNP [dm6]	C	A	8.350e^-5	0.695	INTRON Gmap	TF binding site mE1_TFBS_HSA
2L	561396	2L_561396_SNP [dm3] 2L_561396_SNP [dm6]	T	C	8.365e^-5	0.695	NON_SYNONYMOUS_CODING CG11835 DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1031351	3L_1031351_INS [dm3] 3L_1031351_INS [dm6]	G	GT	8.394e^-5	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14662668	2L_14662668_SNP [dm3] 2L_14662668_SNP [dm6]	G	A	8.404e^-5	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18473308	X_18473308_SNP [dm3] X_18579275_SNP [dm6]	A	C	8.432e^-5	0.695	INTERGENIC
2R	16973786	2R_16973786_SNP [dm3] 2R_21086281_SNP [dm6]	C	A	8.462e^-5	0.695	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	62731	2L_62731_SNP [dm3] 2L_62731_SNP [dm6]	C	T	8.520e^-5	0.695	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4454511	2R_4454511_INS [dm3] 2R_8567006_INS [dm6]	C	CAACCAA	8.525e^-5	0.695	UTR_5_PRIME Cyp6a14
3R	23525734	3R_23525734_SNP [dm3] 3R_27700012_SNP [dm6]	C	T	8.534e^-5	0.695	UTR_5_PRIME ALiX UPSTREAM btz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17616526	2R_17616526_SNP [dm3] 2R_21729021_SNP [dm6]	T	C	8.640e^-5	0.695	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1442059	3L_1442059_SNP [dm3] 3L_1442059_SNP [dm6]	G	T	8.698e^-5	0.695	INTRON Ptp61F
X	16083233	X_16083233_SNP [dm3] X_16189200_SNP [dm6]	G	T	8.716e^-5	0.695	INTERGENIC
2L	2426140	2L_2426140_SNP [dm3] 2L_2426140_SNP [dm6]	G	T	8.738e^-5	0.695	DOWNSTREAM CR44912 INTERGENIC
2R	13026891	2R_13026891_SNP [dm3] 2R_17139386_SNP [dm6]	C	A	8.769e^-5	0.695	UTR_3_PRIME CG11395 DOWNSTREAM CG43103 & 1 other
3L	3167325	3L_3167325_SNP [dm3] 3L_3167325_SNP [dm6]	G	A	8.787e^-5	0.695	INTRON CG32280
3L	3167331	3L_3167331_SNP [dm3] 3L_3167331_SNP [dm6]	G	A	8.787e^-5	0.695	INTRON CG32280
2R	4459136	2R_4459136_SNP [dm3] 2R_8571631_SNP [dm6]	T	A	8.836e^-5	0.695	SYNONYMOUS_CODING Cyp6a13
X	12170165	X_12170165_SNP [dm3] X_12276132_SNP [dm6]	G	A	8.862e^-5	0.695	DOWNSTREAM CG45603 INTRON Ten-a
3L	4783091	3L_4783091_SNP [dm3] 3L_4783091_SNP [dm6]	A	G	8.917e^-5	0.695	INTRON RhoGEF64C
2L	2435448	2L_2435448_DEL [dm3] 2L_2435448_DEL [dm6]	TTCTTCGGT	CA	8.961e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19608152	X_19608152_SNP [dm3] X_19714119_SNP [dm6]	G	A	8.966e^-5	0.695	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6174867	2R_6174867_SNP [dm3] 2R_10287362_SNP [dm6]	G	T	8.977e^-5	0.695	UPSTREAM CAP INTRON CAP
3L	6824167	3L_6824167_SNP [dm3] 3L_6831067_SNP [dm6]	A	T	9.009e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6726551	3R_6726551_SNP [dm3] 3R_10900829_SNP [dm6]	T	A	9.074e^-5	0.695	INTERGENIC
3L	1031373	3L_1031373_SNP [dm3] 3L_1031373_SNP [dm6]	G	A	9.077e^-5	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13747860	2L_13747860_SNP [dm3] 2L_13747860_SNP [dm6]	T	A	9.078e^-5	0.695	UPSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other
2R	14192523	2R_14192523_SNP [dm3] 2R_18305018_SNP [dm6]	T	A	9.083e^-5	0.695	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10177179	X_10177179_SNP [dm3] X_10283146_SNP [dm6]	T	A	9.083e^-5	0.695	INTRON alpha-Man-I
2R	2878333	2R_2878333_SNP [dm3] 2R_6990828_SNP [dm6]	T	C	9.185e^-5	0.695	INTERGENIC
2L	1635430	2L_1635430_SNP [dm3] 2L_1635430_SNP [dm6]	G	A	9.224e^-5	0.695	INTERGENIC
2L	22154373	2L_22154373_SNP [dm3] 2L_22154373_SNP [dm6]	G	T	9.268e^-5	0.695	INTRON CG42748	transposable element FlyBase
X	12948979	X_12948979_INS [dm3] X_13054946_INS [dm6]	G	GG	9.312e^-5	0.695	DOWNSTREAM CR44840 INTRON rad & 1 other	TF binding site mE1_TFBS_inv
3L	5693358	3L_5693358_SNP [dm3] 3L_5700258_SNP [dm6]	C	T	9.346e^-5	0.695	INTRON sif
3R	22773879	3R_22773879_SNP [dm3] 3R_26948157_SNP [dm6]	A	T	9.387e^-5	0.695	NON_SYNONYMOUS_CODING CG18472 UPSTREAM tRNA:CR31071 & 1 other DOWNSTREAM CG14252	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4016311	3L_4016311_SNP [dm3] 3L_4016311_SNP [dm6]	A	G	9.401e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	16082974	X_16082974_SNP [dm3] X_16188941_SNP [dm6]	A	T	9.405e^-5	0.695	INTERGENIC
X	19684056	X_19684056_SNP [dm3] X_19790023_SNP [dm6]	A	G	9.436e^-5	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1013485	3L_1013485_SNP [dm3] 3L_1013485_SNP [dm6]	A	G	9.464e^-5	0.695	INTRON trio
3L	10745165	3L_10745165_SNP [dm3] 3L_10752065_SNP [dm6]	T	A	9.479e^-5	0.695	INTERGENIC
3L	1080232	3L_1080232_SNP [dm3] 3L_1080232_SNP [dm6]	A	G	9.543e^-5	0.695	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13262454	3L_13262454_SNP [dm3] 3L_13269354_SNP [dm6]	G	A	9.585e^-5	0.695	INTRON caps
2L	2435400	2L_2435400_DEL [dm3] 2L_2435400_DEL [dm6]	AA	A	9.622e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	2435458	2L_2435458_SNP [dm3] 2L_2435458_SNP [dm6]	T	A	9.624e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16691936	2R_16691936_SNP [dm3] 2R_20804431_SNP [dm6]	G	A	9.662e^-5	0.695	INTERGENIC
3R	20980408	3R_20980408_SNP [dm3] 3R_25154686_SNP [dm6]	A	T	9.664e^-5	0.695	INTERGENIC
2L	1635398	2L_1635398_INS [dm3] 2L_1635398_INS [dm6]	A	AC	9.710e^-5	0.695	INTERGENIC
2L	13076617	2L_13076617_SNP [dm3] 2L_13076617_SNP [dm6]	A	T	9.719e^-5	0.695	INTERGENIC
2L	2435538	2L_2435538_SNP [dm3] 2L_2435538_SNP [dm6]	T	C	9.835e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	2435552	2L_2435552_MNP [dm3] 2L_2435552_MNP [dm6]	CAA	TTG	9.835e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	10798765	3L_10798765_SNP [dm3] 3L_10805665_SNP [dm6]	A	C	9.855e^-5	0.695	EXON CR44347
2R	14192278	2R_14192278_SNP [dm3] 2R_18304773_SNP [dm6]	T	C	9.869e^-5	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10507617	2R_10507617_SNP [dm3] 2R_14620112_SNP [dm6]	A	G	9.895e^-5	0.695	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2435405	2L_2435405_SNP [dm3] 2L_2435405_SNP [dm6]	C	A	9.932e^-5	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	6885430	3R_6885430_SNP [dm3] 3R_11059708_SNP [dm6]	C	A	9.983e^-5	0.695	INTERGENIC
2R	564798	2R_564798_SNP [dm3] 2R_4677293_SNP [dm6]	T	C	1.003e^-4	0.695	INTERGENIC	transposable element FlyBase
2L	13063898	2L_13063898_SNP [dm3] 2L_13063898_SNP [dm6]	A	T	1.004e^-4	0.695	INTERGENIC
2R	12449758	2R_12449758_SNP [dm3] 2R_16562253_SNP [dm6]	C	T	1.007e^-4	0.695	INTRON DAT
2R	6135773	2R_6135773_SNP [dm3] 2R_10248268_SNP [dm6]	C	G	1.010e^-4	0.695	UPSTREAM CG12209 & 1 other INTRON CG12914
X	5967597	X_5967597_SNP [dm3] X_6073564_SNP [dm6]	C	A	1.012e^-4	0.695	UPSTREAM Tsp5D INTRON Tsp5D
3L	8798114	3L_8798114_SNP [dm3] 3L_8805014_SNP [dm6]	G	A	1.018e^-4	0.695	UPSTREAM CG32023 DOWNSTREAM CG13312 INTRON CG34427
2R	6148662	2R_6148662_INS [dm3] 2R_10261157_INS [dm6]	C	CTG	1.019e^-4	0.695	UTR_3_PRIME CG12911 DOWNSTREAM CR30009
2L	1292735	2L_1292735_SNP [dm3] 2L_1292735_SNP [dm6]	T	C	1.020e^-4	0.695	SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_chinmo
2L	2435436	2L_2435436_MNP [dm3] 2L_2435436_MNP [dm6]	TAAA	CTTC	1.022e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	16082931	X_16082931_SNP [dm3] X_16188898_SNP [dm6]	C	T	1.023e^-4	0.695	INTERGENIC
3R	23344711	3R_23344711_SNP [dm3] 3R_27518989_SNP [dm6]	A	G	1.024e^-4	0.695	INTERGENIC
3R	20802630	3R_20802630_SNP [dm3] 3R_24976908_SNP [dm6]	C	A	1.028e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad
2L	887879	2L_887879_SNP [dm3] 2L_887879_SNP [dm6]	T	C	1.034e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3184276	3L_3184276_SNP [dm3] 3L_3184276_SNP [dm6]	C	T	1.034e^-4	0.695	SYNONYMOUS_CODING Girdin UTR_3_PRIME Girdin UPSTREAM CG42494
3R	14641404	3R_14641404_SNP [dm3] 3R_18815682_SNP [dm6]	A	T	1.049e^-4	0.695	INTRON CG18208
2R	8281989	2R_8281989_SNP [dm3] 2R_12394484_SNP [dm6]	T	G	1.058e^-4	0.695	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2L	12470396	2L_12470396_SNP [dm3] 2L_12470396_SNP [dm6]	C	A	1.063e^-4	0.695	INTRON bun
X	19999491	X_19999491_SNP [dm3] X_20105458_SNP [dm6]	A	G	1.063e^-4	0.695	INTERGENIC
3L	4783035	3L_4783035_SNP [dm3] 3L_4783035_SNP [dm6]	A	G	1.065e^-4	0.695	INTRON RhoGEF64C
3R	20351820	3R_20351820_SNP [dm3] 3R_24526098_SNP [dm6]	A	G	1.068e^-4	0.695	INTRON CG13618
2L	14662659	2L_14662659_SNP [dm3] 2L_14662659_SNP [dm6]	T	A	1.078e^-4	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8766402	2L_8766402_SNP [dm3] 2L_8766402_SNP [dm6]	G	T	1.080e^-4	0.695	SYNONYMOUS_CODING CG9463
2L	16923812	2L_16923812_SNP [dm3] 2L_16923812_SNP [dm6]	C	A	1.082e^-4	0.695	INTERGENIC
2L	14745863	2L_14745863_SNP [dm3] 2L_14745863_SNP [dm6]	G	A	1.084e^-4	0.695	UPSTREAM CR45459 & 2 others DOWNSTREAM CR45458 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14365548	2R_14365548_SNP [dm3] 2R_18478043_SNP [dm6]	T	C	1.092e^-4	0.695	INTRON CG30116
2L	3102178	2L_3102178_DEL [dm3] 2L_3102178_DEL [dm6]	AA	A	1.094e^-4	0.695	INTRON toc
2L	2435540	2L_2435540_SNP [dm3] 2L_2435540_SNP [dm6]	C	T	1.099e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	23147352	3L_23147352_SNP [dm3] 3L_23154252_SNP [dm6]	C	T	1.100e^-4	0.695	INTERGENIC	transposable element FlyBase
3L	23147354	3L_23147354_SNP [dm3] 3L_23154254_SNP [dm6]	T	G	1.100e^-4	0.695	INTERGENIC	transposable element FlyBase
3L	23147355	3L_23147355_SNP [dm3] 3L_23154255_SNP [dm6]	C	A	1.100e^-4	0.695	INTERGENIC	transposable element FlyBase
3R	16326181	3R_16326181_SNP [dm3] 3R_20500459_SNP [dm6]	T	C	1.101e^-4	0.695	SYNONYMOUS_CODING Dic2
2L	2435410	2L_2435410_MNP [dm3] 2L_2435410_MNP [dm6]	AATG	CTGA	1.102e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	9977729	2R_9977729_SNP [dm3] 2R_14090224_SNP [dm6]	T	C	1.105e^-4	0.695	UPSTREAM CG42287 & 1 other INTRON Prosap
3L	8465823	3L_8465823_SNP [dm3] 3L_8472723_SNP [dm6]	A	G	1.108e^-4	0.695	DOWNSTREAM CG43163 & 1 other INTERGENIC
3L	16824518	3L_16824518_SNP [dm3] 3L_16831418_SNP [dm6]	G	A	1.108e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17722151	2R_17722151_SNP [dm3] 2R_21834646_SNP [dm6]	C	A	1.112e^-4	0.695	SYNONYMOUS_CODING CG4363 DOWNSTREAM CG4377
3R	9941230	3R_9941230_SNP [dm3] 3R_14115508_SNP [dm6]	T	C	1.114e^-4	0.695	INTRON Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	12458182	X_12458182_DEL [dm3] X_12564149_DEL [dm6]	ATA	A	1.119e^-4	0.695	INTRON CG43921
3L	2838240	3L_2838240_SNP [dm3] 3L_2838240_SNP [dm6]	C	T	1.123e^-4	0.695	INTRON CG43444
3L	1959539	3L_1959539_SNP [dm3] 3L_1959539_SNP [dm6]	G	A	1.126e^-4	0.695	INTRON mv
X	17550801	X_17550801_SNP [dm3] X_17656768_SNP [dm6]	G	A	1.128e^-4	0.695	UTR_5_PRIME IntS2 UPSTREAM beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1033352	3L_1033352_SNP [dm3] 3L_1033352_SNP [dm6]	A	G	1.133e^-4	0.695	INTRON trio
3L	2920131	3L_2920131_SNP [dm3] 3L_2920131_SNP [dm6]	G	A	1.138e^-4	0.695	INTRON Shab
3L	2950925	3L_2950925_SNP [dm3] 3L_2950925_SNP [dm6]	A	G	1.142e^-4	0.695	SYNONYMOUS_CODING CG32846 INTRON Shab
2R	11997199	2R_11997199_SNP [dm3] 2R_16109694_SNP [dm6]	C	T	1.146e^-4	0.695	SYNONYMOUS_CODING Ric UPSTREAM Asph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	17427030	2R_17427030_SNP [dm3] 2R_21539525_SNP [dm6]	C	T	1.148e^-4	0.695	UPSTREAM CG33226 DOWNSTREAM CG30283 INTRON Egfr
2L	3149422	2L_3149422_SNP [dm3] 2L_3149422_SNP [dm6]	G	T	1.149e^-4	0.695	INTRON Mad
2L	7192193	2L_7192193_SNP [dm3] 2L_7192193_SNP [dm6]	A	C	1.152e^-4	0.695	INTRON CG4497	TF binding site mE1_TFBS_inv
3L	2535107	3L_2535107_SNP [dm3] 3L_2535107_SNP [dm6]	A	G	1.154e^-4	0.695	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14412293	3L_14412293_DEL [dm3] 3L_14419193_DEL [dm6]	CC	C	1.155e^-4	0.695	INTRON bbg
2L	2435496	2L_2435496_DEL [dm3] 2L_2435496_DEL [dm6]	AAACAAAATAAACTA...	A	1.157e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	1.157e^-4	0.695	UPSTREAM CR44542 INTERGENIC
2L	16934340	2L_16934340_DEL [dm3] 2L_16934340_DEL [dm6]	CAA	T	1.168e^-4	0.695	INTERGENIC
X	3243033	X_3243033_SNP [dm3] X_3349000_SNP [dm6]	C	A	1.168e^-4	0.695	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9526517	3L_9526517_SNP [dm3] 3L_9533417_SNP [dm6]	T	A	1.171e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2427545	2L_2427545_SNP [dm3] 2L_2427545_SNP [dm6]	G	C	1.171e^-4	0.695	UPSTREAM dpp EXON CR44912
2L	2433962	2L_2433962_SNP [dm3] 2L_2433962_SNP [dm6]	C	A	1.173e^-4	0.695	INTRON dpp
2L	19167008	2L_19167008_SNP [dm3] 2L_19167008_SNP [dm6]	G	T	1.173e^-4	0.695	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21994306	2L_21994306_SNP [dm3] 2L_21994306_SNP [dm6]	C	T	1.176e^-4	0.695	INTERGENIC	transposable element FlyBase
X	14877674	X_14877674_SNP [dm3] X_14983641_SNP [dm6]	A	C	1.178e^-4	0.695	INTRON eag
2R	9437950	2R_9437950_SNP [dm3] 2R_13550445_SNP [dm6]	C	T	1.178e^-4	0.695	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	18473289	X_18473289_SNP [dm3] X_18579256_SNP [dm6]	T	C	1.179e^-4	0.695	INTERGENIC
3L	1679206	3L_1679206_SNP [dm3] 3L_1679206_SNP [dm6]	C	A	1.181e^-4	0.695	INTRON CG7991
2L	10982814	2L_10982814_SNP [dm3] 2L_10982814_SNP [dm6]	T	C	1.183e^-4	0.695	SYNONYMOUS_CODING piwi DOWNSTREAM SCAR
2R	14915433	2R_14915433_SNP [dm3] 2R_19027928_SNP [dm6]	T	G	1.185e^-4	0.695	INTRON 5-HT1B
2R	6137785	2R_6137785_SNP [dm3] 2R_10250280_SNP [dm6]	T	C	1.186e^-4	0.695	DOWNSTREAM CG12914 INTRON CG12913 & 1 other
X	5964421	X_5964421_SNP [dm3] X_6070388_SNP [dm6]	G	A	1.189e^-4	0.695	SYNONYMOUS_CODING Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_inv
X	2705469	X_2705469_SNP [dm3] X_2811436_SNP [dm6]	G	T	1.191e^-4	0.695	DOWNSTREAM CG12498 INTRON kirre
2L	20329590	2L_20329590_SNP [dm3] 2L_20329590_SNP [dm6]	C	T	1.194e^-4	0.695	INTRON spir
2L	10194552	2L_10194552_SNP [dm3] 2L_10194552_SNP [dm6]	C	T	1.201e^-4	0.695	INTRON Sur
3R	10559375	3R_10559375_SNP [dm3] 3R_14733653_SNP [dm6]	A	C	1.207e^-4	0.695	INTRON eff	TF binding site BDTNP1_TFBS_dl
2L	2435393	2L_2435393_SNP [dm3] 2L_2435393_SNP [dm6]	G	T	1.212e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16308180	2R_16308180_SNP [dm3] 2R_20420675_SNP [dm6]	T	A	1.215e^-4	0.695	INTERGENIC
3L	1033354	3L_1033354_DEL [dm3] 3L_1033354_DEL [dm6]	TATTATCA	T	1.216e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
3R	24826659	3R_24826659_SNP [dm3] 3R_29000937_SNP [dm6]	T	C	1.220e^-4	0.695	INTRON wat
2L	2556879	2L_2556879_SNP [dm3] 2L_2556879_SNP [dm6]	T	A	1.221e^-4	0.695	DOWNSTREAM CR44113 INTERGENIC
3L	9579452	3L_9579452_INS [dm3] 3L_9586352_INS [dm6]	CC	ATA	1.224e^-4	0.695	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10926958	3R_10926958_INS [dm3] 3R_15101236_INS [dm6]	A	AA	1.225e^-4	0.695	INTRON CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10533105	2L_10533105_SNP [dm3] 2L_10533105_SNP [dm6]	T	C	1.226e^-4	0.695	SYNONYMOUS_CODING CG18301
3L	12698463	3L_12698463_SNP [dm3] 3L_12705363_SNP [dm6]	C	T	1.234e^-4	0.695	INTRON mirr
2L	13431341	2L_13431341_SNP [dm3] 2L_13431341_SNP [dm6]	A	T	1.236e^-4	0.695	INTRON CG42784
2L	13995659	2L_13995659_SNP [dm3] 2L_13995659_SNP [dm6]	G	A	1.244e^-4	0.695	INTRON rk	TF binding site mE1_TFBS_HSA
3L	4783155	3L_4783155_SNP [dm3] 3L_4783155_SNP [dm6]	G	T	1.266e^-4	0.695	INTRON RhoGEF64C
3R	10412350	3R_10412350_SNP [dm3] 3R_14586628_SNP [dm6]	A	G	1.266e^-4	0.695	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12768954	3L_12768954_SNP [dm3] 3L_12775854_SNP [dm6]	G	A	1.268e^-4	0.695	SYNONYMOUS_CODING CG32106
2L	13432228	2L_13432228_SNP [dm3] 2L_13432228_SNP [dm6]	A	G	1.282e^-4	0.695	INTRON CG42784
2R	14190494	2R_14190494_SNP [dm3] 2R_18302989_SNP [dm6]	A	G	1.300e^-4	0.695	UTR_3_PRIME CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1805134	3L_1805134_SNP [dm3] 3L_1805134_SNP [dm6]	A	G	1.303e^-4	0.695	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
2L	10455724	2L_10455724_SNP [dm3] 2L_10455724_SNP [dm6]	G	A	1.313e^-4	0.695	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	558680	2R_558680_SNP [dm3] 2R_4671175_SNP [dm6]	G	C	1.315e^-4	0.695	UPSTREAM CG17883 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14192274	2R_14192274_SNP [dm3] 2R_18304769_SNP [dm6]	G	A	1.317e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	5854701	2R_5854701_SNP [dm3] 2R_9967196_SNP [dm6]	C	T	1.320e^-4	0.695	UPSTREAM CG12133 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16620070	X_16620070_SNP [dm3] X_16726037_SNP [dm6]	T	A	1.322e^-4	0.695	INTRON CG32572
2L	21802867	2L_21802867_SNP [dm3] 2L_21802867_SNP [dm6]	T	A	1.323e^-4	0.695	INTERGENIC
3L	16760299	3L_16760299_SNP [dm3] 3L_16767199_SNP [dm6]	C	T	1.324e^-4	0.695	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5146882	3L_5146882_SNP [dm3] 3L_5153782_SNP [dm6]	G	A	1.337e^-4	0.695	INTRON Srp54k	TF binding site mE1_TFBS_sens
2R	14192193	2R_14192193_SNP [dm3] 2R_18304688_SNP [dm6]	G	A	1.337e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14192195	2R_14192195_DEL [dm3] 2R_18304690_DEL [dm6]	GT	A	1.337e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14192200	2R_14192200_DEL [dm3] 2R_18304695_DEL [dm6]	TT	T	1.338e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2435470	2L_2435470_SNP [dm3] 2L_2435470_SNP [dm6]	G	C	1.341e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	8472072	3L_8472072_SNP [dm3] 3L_8478972_SNP [dm6]	C	T	1.342e^-4	0.695	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2949745	3L_2949745_SNP [dm3] 3L_2949745_SNP [dm6]	T	C	1.342e^-4	0.695	DOWNSTREAM CG32846 INTRON Shab
3L	3167352	3L_3167352_SNP [dm3] 3L_3167352_SNP [dm6]	A	G	1.343e^-4	0.695	INTRON CG32280
2R	2873391	2R_2873391_SNP [dm3] 2R_6985886_SNP [dm6]	A	T	1.345e^-4	0.695	UPSTREAM CG17002 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2435476	2L_2435476_SNP [dm3] 2L_2435476_SNP [dm6]	T	A	1.346e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	2950029	3L_2950029_SNP [dm3] 3L_2950029_SNP [dm6]	G	A	1.347e^-4	0.695	DOWNSTREAM CG32846 INTRON Shab
X	14881634	X_14881634_SNP [dm3] X_14987601_SNP [dm6]	A	G	1.350e^-4	0.695	INTRON eag	TF binding site BDTNP1_TFBS_dl
2L	1053381	2L_1053381_SNP [dm3] 2L_1053381_SNP [dm6]	C	T	1.352e^-4	0.695	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23147351	3L_23147351_SNP [dm3] 3L_23154251_SNP [dm6]	A	G	1.359e^-4	0.695	INTERGENIC	transposable element FlyBase
2L	2434057	2L_2434057_SNP [dm3] 2L_2434057_SNP [dm6]	C	T	1.359e^-4	0.695	INTRON dpp
3L	3177985	3L_3177985_SNP [dm3] 3L_3177985_SNP [dm6]	A	C	1.362e^-4	0.695	UPSTREAM Girdin INTRON CG14964
3L	10745074	3L_10745074_SNP [dm3] 3L_10751974_SNP [dm6]	T	C	1.370e^-4	0.695	INTERGENIC
3L	17665390	3L_17665390_SNP [dm3] 3L_17672290_SNP [dm6]	G	C	1.370e^-4	0.695	INTRON CG34251
2R	14191622	2R_14191622_SNP [dm3] 2R_18304117_SNP [dm6]	C	T	1.371e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6141806	2R_6141806_SNP [dm3] 2R_10254301_SNP [dm6]	A	T	1.372e^-4	0.695	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	20001645	X_20001645_SNP [dm3] X_20107612_SNP [dm6]	A	G	1.374e^-4	0.695	INTERGENIC
3L	14974144	3L_14974144_SNP [dm3] 3L_14981044_SNP [dm6]	G	A	1.375e^-4	0.695	SYNONYMOUS_CODING CG3349
2L	14386780	2L_14386780_SNP [dm3] 2L_14386780_SNP [dm6]	G	A	1.379e^-4	0.695	INTERGENIC
2L	11169360	2L_11169360_SNP [dm3] 2L_11169360_SNP [dm6]	T	C	1.380e^-4	0.695	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
2L	13064647	2L_13064647_SNP [dm3] 2L_13064647_SNP [dm6]	G	A	1.382e^-4	0.695	INTERGENIC
3L	19986536	3L_19986536_SNP [dm3] 3L_19993436_SNP [dm6]	A	T	1.382e^-4	0.695	UPSTREAM CG7646 INTRON CG7646 & 1 other
3L	857185	3L_857185_DEL [dm3] 3L_857185_DEL [dm6]	TC	G	1.383e^-4	0.695	UTR_5_PRIME dpr20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1607045	2L_1607045_DEL [dm3] 2L_1607045_DEL [dm6]	GC	G	1.383e^-4	0.695	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9007454	3L_9007454_SNP [dm3] 3L_9014354_SNP [dm6]	A	G	1.386e^-4	0.695	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	1.387e^-4	0.695	DOWNSTREAM CR43964 INTERGENIC
2L	8990401	2L_8990401_SNP [dm3] 2L_8990401_SNP [dm6]	C	T	1.388e^-4	0.695	UPSTREAM rost INTERGENIC
3L	7642897	3L_7642897_SNP [dm3] 3L_7649797_SNP [dm6]	G	A	1.392e^-4	0.695	UPSTREAM CG32373 INTERGENIC
3L	10610985	3L_10610985_SNP [dm3] 3L_10617885_SNP [dm6]	A	G	1.396e^-4	0.695	INTERGENIC
2L	19240788	2L_19240788_SNP [dm3] 2L_19240788_SNP [dm6]	T	A	1.396e^-4	0.695	INTERGENIC
2R	10278910	2R_10278910_SNP [dm3] 2R_14391405_SNP [dm6]	T	C	1.401e^-4	0.695	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16082928	X_16082928_SNP [dm3] X_16188895_SNP [dm6]	T	C	1.401e^-4	0.695	INTERGENIC
2L	2435420	2L_2435420_SNP [dm3] 2L_2435420_SNP [dm6]	A	G	1.408e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1263183	3L_1263183_SNP [dm3] 3L_1263183_SNP [dm6]	G	T	1.414e^-4	0.695	INTRON CG9134
3L	1805266	3L_1805266_SNP [dm3] 3L_1805266_SNP [dm6]	A	G	1.415e^-4	0.695	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
2R	14113702	2R_14113702_SNP [dm3] 2R_18226197_SNP [dm6]	G	A	1.416e^-4	0.695	UPSTREAM CR45310 INTERGENIC
3L	8467928	3L_8467928_SNP [dm3] 3L_8474828_SNP [dm6]	T	C	1.418e^-4	0.695	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1326862	3L_1326862_SNP [dm3] 3L_1326862_SNP [dm6]	A	G	1.424e^-4	0.695	INTRON Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8382896	3L_8382896_SNP [dm3] 3L_8389796_SNP [dm6]	G	T	1.424e^-4	0.695	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9289256	2L_9289256_SNP [dm3] 2L_9289256_SNP [dm6]	G	A	1.427e^-4	0.695	INTRON Ggamma30A
X	9109344	X_9109344_SNP [dm3] X_9215311_SNP [dm6]	A	G	1.428e^-4	0.695	SYNONYMOUS_CODING Obp8a UPSTREAM CG15368
2L	1635382	2L_1635382_SNP [dm3] 2L_1635382_SNP [dm6]	T	A	1.429e^-4	0.695	INTERGENIC
3L	22281672	3L_22281672_DEL [dm3] 3L_22288572_DEL [dm6]	TT	T	1.429e^-4	0.695	UPSTREAM Aats-ile & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1013742	3L_1013742_SNP [dm3] 3L_1013742_SNP [dm6]	T	A	1.435e^-4	0.695	INTRON trio
2L	2427550	2L_2427550_SNP [dm3] 2L_2427550_SNP [dm6]	T	C	1.437e^-4	0.695	UPSTREAM dpp EXON CR44912
2R	11085039	2R_11085039_SNP [dm3] 2R_15197534_SNP [dm6]	T	C	1.440e^-4	0.695	INTERGENIC
3R	19152225	3R_19152225_SNP [dm3] 3R_23326503_SNP [dm6]	T	A	1.442e^-4	0.695	INTRON pnt	TF binding site mE1_TFBS_sens
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	1.446e^-4	0.695	INTERGENIC
X	13473366	X_13473366_SNP [dm3] X_13579333_SNP [dm6]	G	C	1.453e^-4	0.695	INTRON Tango13
2R	5854696	2R_5854696_SNP [dm3] 2R_9967191_SNP [dm6]	T	A	1.453e^-4	0.695	UPSTREAM CG12133 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	22201175	X_22201175_SNP [dm3] X_22799339_SNP [dm6]	T	C	1.465e^-4	0.695	INTERGENIC
2L	9346999	2L_9346999_SNP [dm3] 2L_9346999_SNP [dm6]	A	G	1.472e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22268060	3R_22268060_SNP [dm3] 3R_26442338_SNP [dm6]	T	C	1.474e^-4	0.695	INTRON tx
3L	16078538	3L_16078538_DEL [dm3] 3L_16085438_DEL [dm6]	GTG	G	1.475e^-4	0.695	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	1080259	3L_1080259_SNP [dm3] 3L_1080259_SNP [dm6]	A	G	1.481e^-4	0.695	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14366346	2R_14366346_SNP [dm3] 2R_18478841_SNP [dm6]	C	T	1.484e^-4	0.695	INTRON CG30116
3R	20399926	3R_20399926_SNP [dm3] 3R_24574204_SNP [dm6]	G	A	1.489e^-4	0.695	INTRON CG13624
3R	5300927	3R_5300927_SNP [dm3] 3R_9475205_SNP [dm6]	T	C	1.498e^-4	0.695	NON_SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_cad
3L	11819799	3L_11819799_SNP [dm3] 3L_11826699_SNP [dm6]	C	A	1.501e^-4	0.695	UPSTREAM CG32095 DOWNSTREAM CycA INTERGENIC
3L	13499592	3L_13499592_SNP [dm3] 3L_13506492_SNP [dm6]	A	G	1.506e^-4	0.695	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad
2R	6149901	2R_6149901_SNP [dm3] 2R_10262396_SNP [dm6]	C	T	1.510e^-4	0.695	DOWNSTREAM CR30009 EXON CR30009
3R	13928292	3R_13928292_SNP [dm3] 3R_18102570_SNP [dm6]	A	T	1.516e^-4	0.695	INTRON sr
2R	11169353	2R_11169353_SNP [dm3] 2R_15281848_SNP [dm6]	C	T	1.516e^-4	0.695	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13896004	2L_13896004_SNP [dm3] 2L_13896004_SNP [dm6]	C	G	1.518e^-4	0.695	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2R	836278	2R_836278_SNP [dm3] 2R_4948773_SNP [dm6]	G	A	1.521e^-4	0.695	INTRON Ir41a
3L	14412449	3L_14412449_SNP [dm3] 3L_14419349_SNP [dm6]	C	T	1.521e^-4	0.695	INTRON bbg
3L	1033378	3L_1033378_SNP [dm3] 3L_1033378_SNP [dm6]	A	T	1.521e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
X	22221863	X_22221863_SNP [dm3] X_22820027_SNP [dm6]	T	C	1.528e^-4	0.695	INTERGENIC
2L	2435477	2L_2435477_SNP [dm3] 2L_2435477_SNP [dm6]	T	A	1.533e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	21882052	2L_21882052_SNP [dm3] 2L_21882052_SNP [dm6]	A	T	1.546e^-4	0.695	INTERGENIC
2R	19490347	2R_19490347_SNP [dm3] 2R_23602824_SNP [dm6]	G	A	1.550e^-4	0.695	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664
3L	5766765	3L_5766765_SNP [dm3] 3L_5773665_SNP [dm6]	C	T	1.552e^-4	0.695	SYNONYMOUS_CODING scny	TF binding site mE1_TFBS_sens
3L	6727421	3L_6727421_SNP [dm3] 3L_6734321_SNP [dm6]	C	T	1.553e^-4	0.695	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4783158	3L_4783158_SNP [dm3] 3L_4783158_SNP [dm6]	G	A	1.553e^-4	0.695	INTRON RhoGEF64C
2L	21019069	2L_21019069_SNP [dm3] 2L_21019069_SNP [dm6]	T	C	1.554e^-4	0.695	INTRON CG42238
2R	4588228	2R_4588228_SNP [dm3] 2R_8700723_SNP [dm6]	C	A	1.564e^-4	0.695	UTR_3_PRIME CG8584
2L	1148346	2L_1148346_SNP [dm3] 2L_1148346_SNP [dm6]	A	G	1.567e^-4	0.695	NON_SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24491485	3R_24491485_SNP [dm3] 3R_28665763_SNP [dm6]	C	G	1.577e^-4	0.695	INTERGENIC
2L	11533937	2L_11533937_SNP [dm3] 2L_11533937_SNP [dm6]	A	G	1.577e^-4	0.695	DOWNSTREAM CG34162 EXON CR42743
2L	9289273	2L_9289273_SNP [dm3] 2L_9289273_SNP [dm6]	C	G	1.593e^-4	0.695	INTRON Ggamma30A
3L	1033350	3L_1033350_SNP [dm3] 3L_1033350_SNP [dm6]	A	C	1.600e^-4	0.695	INTRON trio
3L	886622	3L_886622_SNP [dm3] 3L_886622_SNP [dm6]	G	A	1.601e^-4	0.695	INTRON CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14877679	X_14877679_SNP [dm3] X_14983646_SNP [dm6]	T	C	1.604e^-4	0.695	INTRON eag
X	12398461	X_12398461_SNP [dm3] X_12504428_SNP [dm6]	G	A	1.607e^-4	0.695	INTRON CG2556
X	3870160	X_3870160_SNP [dm3] X_3976127_SNP [dm6]	G	A	1.611e^-4	0.695	INTERGENIC
3L	9965563	3L_9965563_SNP [dm3] 3L_9972463_SNP [dm6]	G	T	1.612e^-4	0.695	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	887911	2L_887911_SNP [dm3] 2L_887911_SNP [dm6]	C	T	1.627e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8471707	3L_8471707_DEL [dm3] 3L_8478607_DEL [dm6]	TT	T	1.629e^-4	0.695	SPLICE_SITE_REGION CG43163 INTRON CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6031835	2L_6031835_SNP [dm3] 2L_6031835_SNP [dm6]	C	G	1.631e^-4	0.695	NON_SYNONYMOUS_CODING CG9109 INTRON CG9109	TF binding site mE1_TFBS_chinmo
2R	6135741	2R_6135741_SNP [dm3] 2R_10248236_SNP [dm6]	G	C	1.633e^-4	0.695	SYNONYMOUS_CODING CG12914 UPSTREAM CG12209 & 1 other
3L	11887050	3L_11887050_INS [dm3] 3L_11893950_INS [dm6]	C	CTGC	1.639e^-4	0.695	INTRON CG44837
3L	3621869	3L_3621869_SNP [dm3] 3L_3621869_SNP [dm6]	G	T	1.642e^-4	0.695	UPSTREAM CG14974 INTERGENIC
3L	4163644	3L_4163644_SNP [dm3] 3L_4163644_SNP [dm6]	T	A	1.642e^-4	0.695	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8474280	3L_8474280_SNP [dm3] 3L_8481180_SNP [dm6]	G	A	1.643e^-4	0.695	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2435421	2L_2435421_SNP [dm3] 2L_2435421_SNP [dm6]	A	C	1.643e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8050602	2L_8050602_SNP [dm3] 2L_8050602_SNP [dm6]	A	G	1.643e^-4	0.695	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
2R	6152166	2R_6152166_SNP [dm3] 2R_10264661_SNP [dm6]	A	C	1.645e^-4	0.695	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2435520	2L_2435520_SNP [dm3] 2L_2435520_SNP [dm6]	A	G	1.647e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	2435522	2L_2435522_SNP [dm3] 2L_2435522_SNP [dm6]	T	C	1.647e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2R	12028279	2R_12028279_SNP [dm3] 2R_16140774_SNP [dm6]	C	G	1.649e^-4	0.695	SYNONYMOUS_CODING Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2705466	X_2705466_SNP [dm3] X_2811433_SNP [dm6]	T	A	1.654e^-4	0.695	DOWNSTREAM CG12498 INTRON kirre
X	5969090	X_5969090_SNP [dm3] X_6075057_SNP [dm6]	T	A	1.657e^-4	0.695	UPSTREAM Tsp5D INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17616529	2R_17616529_SNP [dm3] 2R_21729024_SNP [dm6]	G	A	1.660e^-4	0.695	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1033381	3L_1033381_SNP [dm3] 3L_1033381_SNP [dm6]	A	T	1.660e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
3R	23914152	3R_23914152_SNP [dm3] 3R_28088430_SNP [dm6]	C	A	1.662e^-4	0.695	UTR_3_PRIME CG34362
2R	12813452	2R_12813452_SNP [dm3] 2R_16925947_SNP [dm6]	C	T	1.663e^-4	0.695	INTRON Pkc53E
X	12048815	X_12048815_SNP [dm3] X_12154782_SNP [dm6]	C	T	1.664e^-4	0.695	INTRON Ten-a
2R	5847201	2R_5847201_DEL [dm3] 2R_9959696_DEL [dm6]	AAACA	A	1.665e^-4	0.695	SPLICE_SITE_ACCEPTOR Pal1 SPLICE_SITE_REGION Pal1 UTR_5_PRIME CG15863 UPSTREAM Mef2 & 1 other INTRON Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	1011791	2R_1011791_SNP [dm3] 2R_5124286_SNP [dm6]	T	C	1.666e^-4	0.695	INTRON gus	transposable element FlyBase
3L	1942928	3L_1942928_SNP [dm3] 3L_1942928_SNP [dm6]	G	A	1.666e^-4	0.695	UTR_3_PRIME mu2 DOWNSTREAM Mfap1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5261900	2R_5261900_SNP [dm3] 2R_9374395_SNP [dm6]	G	A	1.674e^-4	0.695	UTR_5_PRIME CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8240051	2R_8240051_SNP [dm3] 2R_12352546_SNP [dm6]	C	A	1.685e^-4	0.695	SYNONYMOUS_CODING CG30047	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3923405	2L_3923405_DEL [dm3] 2L_3923405_DEL [dm6]	CCGCACATTTTC...	C	1.691e^-4	0.695	INTRON fred
3L	1033370	3L_1033370_DEL [dm3] 3L_1033370_DEL [dm6]	GC	G	1.706e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
3L	16934539	3L_16934539_SNP [dm3] 3L_16941439_SNP [dm6]	C	G	1.707e^-4	0.695	INTRON Cpr73D
2R	2860653	2R_2860653_SNP [dm3] 2R_6973148_SNP [dm6]	G	T	1.708e^-4	0.695	NON_SYNONYMOUS_CODING Cyp6u1 DOWNSTREAM CG30157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14806839	X_14806839_SNP [dm3] X_14912806_SNP [dm6]	T	C	1.710e^-4	0.695	SYNONYMOUS_CODING CG12398 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2848480	2R_2848480_SNP [dm3] 2R_6960975_SNP [dm6]	G	A	1.713e^-4	0.695	INTRON mim & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9519677	2L_9519677_SNP [dm3] 2L_9519677_SNP [dm6]	C	T	1.713e^-4	0.695	INTRON CG33298
2R	11169356	2R_11169356_SNP [dm3] 2R_15281851_SNP [dm6]	T	C	1.719e^-4	0.695	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9370189	3L_9370189_SNP [dm3] 3L_9377089_SNP [dm6]	C	T	1.735e^-4	0.695	NON_SYNONYMOUS_CODING Hsp26 DOWNSTREAM CG4461 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6723323	3R_6723323_SNP [dm3] 3R_10897601_SNP [dm6]	C	A	1.742e^-4	0.695	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
2L	2422682	2L_2422682_SNP [dm3] 2L_2422682_SNP [dm6]	G	A	1.746e^-4	0.695	UTR_3_PRIME CG9886
3L	13972245	3L_13972245_SNP [dm3] 3L_13979145_SNP [dm6]	T	C	1.747e^-4	0.695	SYNONYMOUS_CODING CG17364 UTR_3_PRIME CG17364
2R	6050429	2R_6050429_SNP [dm3] 2R_10162924_SNP [dm6]	T	G	1.754e^-4	0.695	INTRON KCNQ
2R	18392866	2R_18392866_SNP [dm3] 2R_22505361_SNP [dm6]	A	T	1.765e^-4	0.695	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8452610	3L_8452610_SNP [dm3] 3L_8459510_SNP [dm6]	A	C	1.767e^-4	0.695	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14192219	2R_14192219_SNP [dm3] 2R_18304714_SNP [dm6]	T	G	1.771e^-4	0.695	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1033380	3L_1033380_SNP [dm3] 3L_1033380_SNP [dm6]	C	T	1.775e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl
3R	10559370	3R_10559370_SNP [dm3] 3R_14733648_SNP [dm6]	T	G	1.776e^-4	0.695	INTRON eff	TF binding site BDTNP1_TFBS_dl
3L	10579821	3L_10579821_SNP [dm3] 3L_10586721_SNP [dm6]	T	C	1.781e^-4	0.695	INTRON A2bp1
2L	9141606	2L_9141606_DEL [dm3] 2L_9141606_DEL [dm6]	CACCCCT	GGA	1.782e^-4	0.695	INTRON CG32982
X	8142379	X_8142379_SNP [dm3] X_8248346_SNP [dm6]	T	C	1.791e^-4	0.695	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	9229184	2L_9229184_SNP [dm3] 2L_9229184_SNP [dm6]	A	C	1.794e^-4	0.695	INTRON tai
3L	10143019	3L_10143019_SNP [dm3] 3L_10149919_SNP [dm6]	A	G	1.829e^-4	0.695	INTRON dpr10
2L	19901855	2L_19901855_SNP [dm3] 2L_19901855_SNP [dm6]	T	A	1.836e^-4	0.695	INTRON sick
2R	16783466	2R_16783466_SNP [dm3] 2R_20895961_SNP [dm6]	G	T	1.840e^-4	0.695	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10515070	3L_10515070_DEL [dm3] 3L_10521970_DEL [dm6]	TT	T	1.850e^-4	0.695	INTRON A2bp1	TF binding site BDTNP1_TFBS_prd
3R	23344930	3R_23344930_SNP [dm3] 3R_27519208_SNP [dm6]	T	C	1.856e^-4	0.695	INTERGENIC
2R	8949138	2R_8949138_SNP [dm3] 2R_13061633_SNP [dm6]	C	G	1.862e^-4	0.695	INTRON Drl-2
3L	9101205	3L_9101205_SNP [dm3] 3L_9108105_SNP [dm6]	A	G	1.864e^-4	0.695	INTRON bol
X	10462972	X_10462972_SNP [dm3] X_10568939_SNP [dm6]	T	C	1.865e^-4	0.695	INTRON spri
2L	13895962	2L_13895962_SNP [dm3] 2L_13895962_SNP [dm6]	T	C	1.867e^-4	0.695	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2L	9844165	2L_9844165_SNP [dm3] 2L_9844165_SNP [dm6]	T	C	1.868e^-4	0.695	INTRON nAChRalpha6
3R	19220167	3R_19220167_SNP [dm3] 3R_23394445_SNP [dm6]	G	T	1.870e^-4	0.695	INTERGENIC
2L	13431427	2L_13431427_SNP [dm3] 2L_13431427_SNP [dm6]	T	C	1.873e^-4	0.695	INTRON CG42784
3R	23883062	3R_23883062_SNP [dm3] 3R_28057340_SNP [dm6]	T	C	1.874e^-4	0.695	INTRON CG34362
2L	20322127	2L_20322127_SNP [dm3] 2L_20322127_SNP [dm6]	T	C	1.876e^-4	0.695	INTRON spir	TF binding site mE1_TFBS_cad
2L	12249740	2L_12249740_SNP [dm3] 2L_12249740_SNP [dm6]	G	A	1.879e^-4	0.695	INTRON aret
3L	22172221	3L_22172221_SNP [dm3] 3L_22179121_SNP [dm6]	T	C	1.880e^-4	0.695	INTRON olf413
2L	22208092	2L_22208092_SNP [dm3] 2L_22208092_SNP [dm6]	T	C	1.892e^-4	0.695	INTRON Ir40a	transposable element FlyBase
3R	20980424	3R_20980424_SNP [dm3] 3R_25154702_SNP [dm6]	G	A	1.895e^-4	0.695	INTERGENIC
2R	2853367	2R_2853367_DEL [dm3] 2R_6965862_DEL [dm6]	GAG	G	1.899e^-4	0.695	INTRON mim & 1 other
2L	5749964	2L_5749964_SNP [dm3] 2L_5749964_SNP [dm6]	G	A	1.900e^-4	0.695	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25785835	3R_25785835_SNP [dm3] 3R_29960113_SNP [dm6]	C	A	1.902e^-4	0.695	INTRON TkR99D
3L	2627732	3L_2627732_SNP [dm3] 3L_2627732_SNP [dm6]	G	C	1.902e^-4	0.695	INTRON Pxn	TF binding site BDTNP1_TFBS_sna
3L	1033400	3L_1033400_SNP [dm3] 3L_1033400_SNP [dm6]	G	T	1.905e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16396765	2L_16396765_SNP [dm3] 2L_16396765_SNP [dm6]	G	T	1.906e^-4	0.695	INTERGENIC
3R	23294886	3R_23294886_SNP [dm3] 3R_27469164_SNP [dm6]	G	T	1.910e^-4	0.695	INTERGENIC
2L	1287871	2L_1287871_SNP [dm3] 2L_1287871_SNP [dm6]	G	A	1.913e^-4	0.695	INTRON robo3
2R	17348899	2R_17348899_INS [dm3] 2R_21461394_INS [dm6]	A	ATA	1.917e^-4	0.695	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19195671	3R_19195671_SNP [dm3] 3R_23369949_SNP [dm6]	C	G	1.923e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	8999715	2L_8999715_SNP [dm3] 2L_8999715_SNP [dm6]	G	A	1.931e^-4	0.695	UTR_3_PRIME Try29F DOWNSTREAM Try29F
3R	18017724	3R_18017724_SNP [dm3] 3R_22192002_SNP [dm6]	A	C	1.934e^-4	0.695	INTRON SKIP
2R	11169345	2R_11169345_SNP [dm3] 2R_15281840_SNP [dm6]	T	A	1.935e^-4	0.695	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9229168	2L_9229168_SNP [dm3] 2L_9229168_SNP [dm6]	A	G	1.936e^-4	0.695	INTRON tai
2R	14366805	2R_14366805_SNP [dm3] 2R_18479300_SNP [dm6]	C	T	1.948e^-4	0.695	INTRON CG30116
2R	10926355	2R_10926355_INS [dm3] 2R_15038850_INS [dm6]	T	TT	1.951e^-4	0.695	INTRON hbs
2R	5849266	2R_5849266_SNP [dm3] 2R_9961761_SNP [dm6]	C	T	1.952e^-4	0.695	SYNONYMOUS_CODING Pal1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13911343	2L_13911343_SNP [dm3] 2L_13911343_SNP [dm6]	G	T	1.954e^-4	0.695	SYNONYMOUS_CODING Ance-2 UPSTREAM Acyp	TF binding site mE1_TFBS_HSA
2L	2435417	2L_2435417_SNP [dm3] 2L_2435417_SNP [dm6]	T	C	1.958e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	1056922	2L_1056922_SNP [dm3] 2L_1056922_SNP [dm6]	C	T	1.962e^-4	0.695	INTRON S	TF binding site BDTNP1_TFBS_da
3L	1077915	3L_1077915_SNP [dm3] 3L_1077915_SNP [dm6]	G	A	1.966e^-4	0.695	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14437375	3R_14437375_SNP [dm3] 3R_18611653_SNP [dm6]	T	A	1.972e^-4	0.695	INTRON qin & 1 other
3L	15901115	3L_15901115_SNP [dm3] 3L_15908015_SNP [dm6]	G	A	1.973e^-4	0.695	INTRON sff
2R	1011950	2R_1011950_SNP [dm3] 2R_5124445_SNP [dm6]	C	T	1.975e^-4	0.695	INTRON gus	transposable element FlyBase
3L	10449830	3L_10449830_SNP [dm3] 3L_10456730_SNP [dm6]	A	C	1.978e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15345818	3R_15345818_SNP [dm3] 3R_19520096_SNP [dm6]	T	C	1.981e^-4	0.695	INTRON Dys
3L	2950216	3L_2950216_SNP [dm3] 3L_2950216_SNP [dm6]	C	T	1.981e^-4	0.695	UTR_3_PRIME CG32846 INTRON Shab
2L	2432321	2L_2432321_SNP [dm3] 2L_2432321_SNP [dm6]	C	T	1.981e^-4	0.695	INTRON dpp
2R	8125560	2R_8125560_DEL [dm3] 2R_12238055_DEL [dm6]	AT	A	1.984e^-4	0.695	INTERGENIC
2R	14190397	2R_14190397_SNP [dm3] 2R_18302892_SNP [dm6]	T	C	1.985e^-4	0.695	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10652567	3R_10652567_SNP [dm3] 3R_14826845_SNP [dm6]	A	G	1.990e^-4	0.695	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2923330	3L_2923330_SNP [dm3] 3L_2923330_SNP [dm6]	T	C	1.991e^-4	0.695	INTRON Shab
2L	5825039	2L_5825039_SNP [dm3] 2L_5825039_SNP [dm6]	T	C	1.994e^-4	0.695	UTR_5_PRIME TrissinR
2R	670516	2R_670516_INS [dm3] 2R_4783011_INS [dm6]	C	CGGC	1.994e^-4	0.695	EXON CR43281
3R	10833982	3R_10833982_SNP [dm3] 3R_15008260_SNP [dm6]	T	C	1.999e^-4	0.695	INTERGENIC
X	2705303	X_2705303_SNP [dm3] X_2811270_SNP [dm6]	G	T	1.999e^-4	0.695	DOWNSTREAM CG12498 INTRON kirre
X	20424375	X_20424375_DEL [dm3] X_20553348_DEL [dm6]	TTATTT	T	2.013e^-4	0.695	INTRON RunxB
3R	25211911	3R_25211911_SNP [dm3] 3R_29386189_SNP [dm6]	T	C	2.014e^-4	0.695	INTRON Ptp99A	TF binding site mE1_TFBS_inv
2L	21722125	2L_21722125_SNP [dm3] 2L_21722125_SNP [dm6]	T	C	2.019e^-4	0.695	INTRON CG31619
3L	1675463	3L_1675463_SNP [dm3] 3L_1675463_SNP [dm6]	T	C	2.023e^-4	0.695	INTRON CG7991	TF binding site mE1_TFBS_HSA
X	16083231	X_16083231_SNP [dm3] X_16189198_SNP [dm6]	G	A	2.026e^-4	0.695	INTERGENIC
X	2705452	X_2705452_SNP [dm3] X_2811419_SNP [dm6]	C	T	2.028e^-4	0.695	DOWNSTREAM CG12498 INTRON kirre
2L	1658892	2L_1658892_DEL [dm3] 2L_1658892_DEL [dm6]	TGT	T	2.031e^-4	0.695	INTRON chinmo	TF binding site mE1_TFBS_Trl
3L	17248898	3L_17248898_SNP [dm3] 3L_17255798_SNP [dm6]	C	A	2.036e^-4	0.695	INTRON CR43870	TF binding site BDTNP1_TFBS_dl
2L	2435443	2L_2435443_SNP [dm3] 2L_2435443_SNP [dm6]	G	T	2.037e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	21877725	X_21877725_SNP [dm3] X_22475889_SNP [dm6]	T	A	2.039e^-4	0.695	NON_SYNONYMOUS_CODING CG12576 DOWNSTREAM CG14618
3R	8766394	3R_8766394_SNP [dm3] 3R_12940672_SNP [dm6]	A	T	2.040e^-4	0.695	INTERGENIC
3R	11874898	3R_11874898_DEL [dm3] 3R_16049176_DEL [dm6]	TGTAT	T	2.042e^-4	0.695	UPSTREAM CG5013 INTRON ird5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	10538230	3L_10538230_DEL [dm3] 3L_10545130_DEL [dm6]	AA	A	2.045e^-4	0.695	INTRON A2bp1
2L	19245363	2L_19245363_SNP [dm3] 2L_19245363_SNP [dm6]	T	C	2.047e^-4	0.695	INTERGENIC
3L	8797495	3L_8797495_SNP [dm3] 3L_8804395_SNP [dm6]	A	G	2.047e^-4	0.695	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2R	17616532	2R_17616532_SNP [dm3] 2R_21729027_SNP [dm6]	T	A	2.055e^-4	0.695	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9722992	3R_9722992_SNP [dm3] 3R_13897270_SNP [dm6]	C	T	2.062e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13991532	2L_13991532_SNP [dm3] 2L_13991532_SNP [dm6]	G	A	2.062e^-4	0.695	INTRON rk
2R	16535108	2R_16535108_SNP [dm3] 2R_20647603_SNP [dm6]	A	G	2.072e^-4	0.695	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	22870063	3L_22870063_SNP [dm3] 3L_22876963_SNP [dm6]	C	A	2.075e^-4	0.695	NON_SYNONYMOUS_CODING Chro	TF binding site mE1_TFBS_sens
X	12550234	X_12550234_SNP [dm3] X_12656201_SNP [dm6]	C	T	2.077e^-4	0.695	INTRON CkIalpha
3L	8473852	3L_8473852_SNP [dm3] 3L_8480752_SNP [dm6]	G	A	2.078e^-4	0.695	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10177219	X_10177219_INS [dm3] X_10283186_INS [dm6]	G	GG	2.083e^-4	0.695	INTRON alpha-Man-I
2L	2436870	2L_2436870_SNP [dm3] 2L_2436870_SNP [dm6]	A	C	2.087e^-4	0.695	INTRON dpp
2L	15812973	2L_15812973_SNP [dm3] 2L_15812973_SNP [dm6]	C	A	2.091e^-4	0.695	UPSTREAM CG42876 INTERGENIC
2R	14393126	2R_14393126_SNP [dm3] 2R_18505621_SNP [dm6]	A	C	2.092e^-4	0.695	DOWNSTREAM GstE11 INTERGENIC
2L	6360887	2L_6360887_SNP [dm3] 2L_6360887_SNP [dm6]	A	G	2.093e^-4	0.695	UPSTREAM CR44777 EXON CR44778
2R	15284443	2R_15284443_SNP [dm3] 2R_19396938_SNP [dm6]	C	G	2.094e^-4	0.695	UPSTREAM SdhA & 1 other DOWNSTREAM hts INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	2980209	2L_2980209_SNP [dm3] 2L_2980209_SNP [dm6]	T	C	2.095e^-4	0.695	SYNONYMOUS_CODING Chd1 UPSTREAM CG9643	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2821832	2R_2821832_INS [dm3] 2R_6934327_INS [dm6]	G	GG	2.097e^-4	0.695	INTRON mim	TF binding site BDTNP1_TFBS_prd
2L	711116	2L_711116_SNP [dm3] 2L_711116_SNP [dm6]	A	T	2.097e^-4	0.695	INTRON ds & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2880448	2R_2880448_SNP [dm3] 2R_6992943_SNP [dm6]	G	T	2.098e^-4	0.695	UTR_5_PRIME CG30159 INTRON Tsp42Ea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14437372	3R_14437372_SNP [dm3] 3R_18611650_SNP [dm6]	A	T	2.106e^-4	0.695	INTRON qin & 1 other
3L	11456254	3L_11456254_SNP [dm3] 3L_11463154_SNP [dm6]	C	T	2.109e^-4	0.695	DOWNSTREAM CG6140 INTERGENIC
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	2.116e^-4	0.695	UPSTREAM CG1304 INTERGENIC
2L	2435481	2L_2435481_SNP [dm3] 2L_2435481_SNP [dm6]	G	T	2.117e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	14753069	2L_14753069_SNP [dm3] 2L_14753069_SNP [dm6]	A	C	2.117e^-4	0.695	INTERGENIC
2R	6174978	2R_6174978_SNP [dm3] 2R_10287473_SNP [dm6]	T	G	2.123e^-4	0.695	UPSTREAM CAP INTRON CAP
X	10115008	X_10115008_INS [dm3] X_10220975_INS [dm6]	T	TTAT	2.132e^-4	0.695	INTRON CG34408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17665458	3L_17665458_SNP [dm3] 3L_17672358_SNP [dm6]	C	T	2.139e^-4	0.695	INTRON CG34251
3L	16955222	3L_16955222_SNP [dm3] 3L_16962122_SNP [dm6]	G	A	2.148e^-4	0.695	INTRON Nc73EF
2R	6962938	2R_6962938_SNP [dm3] 2R_11075433_SNP [dm6]	C	A	2.149e^-4	0.695	INTRON luna
3L	8797448	3L_8797448_SNP [dm3] 3L_8804348_SNP [dm6]	A	G	2.155e^-4	0.695	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2R	2878511	2R_2878511_SNP [dm3] 2R_6991006_SNP [dm6]	A	T	2.157e^-4	0.695	INTERGENIC
3R	5264910	3R_5264910_SNP [dm3] 3R_9439188_SNP [dm6]	A	T	2.158e^-4	0.695	INTRON ps
2R	1011894	2R_1011894_SNP [dm3] 2R_5124389_SNP [dm6]	A	C	2.161e^-4	0.695	INTRON gus	transposable element FlyBase
2L	10602469	2L_10602469_SNP [dm3] 2L_10602469_SNP [dm6]	A	G	2.166e^-4	0.695	INTRON Trim9
3R	18892928	3R_18892928_SNP [dm3] 3R_23067206_SNP [dm6]	A	T	2.170e^-4	0.695	UTR_5_PRIME CG17111
X	14528476	X_14528476_SNP [dm3] X_14634443_SNP [dm6]	A	C	2.170e^-4	0.695	INTRON NetA
2R	5853369	2R_5853369_SNP [dm3] 2R_9965864_SNP [dm6]	G	T	2.171e^-4	0.695	UPSTREAM CG1418 INTERGENIC
3L	3549294	3L_3549294_SNP [dm3] 3L_3549294_SNP [dm6]	C	A	2.176e^-4	0.695	INTRON Eip63E
X	8839640	X_8839640_SNP [dm3] X_8945607_SNP [dm6]	C	A	2.178e^-4	0.695	INTRON rdgA
2L	13431370	2L_13431370_SNP [dm3] 2L_13431370_SNP [dm6]	C	A	2.181e^-4	0.695	INTRON CG42784
2L	1059740	2L_1059740_SNP [dm3] 2L_1059740_SNP [dm6]	G	A	2.185e^-4	0.695	INTRON S
3L	21142445	3L_21142445_SNP [dm3] 3L_21149345_SNP [dm6]	C	G	2.189e^-4	0.695	INTRON Ac78C
2L	2435479	2L_2435479_SNP [dm3] 2L_2435479_SNP [dm6]	T	C	2.191e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	11533921	2L_11533921_SNP [dm3] 2L_11533921_SNP [dm6]	C	A	2.192e^-4	0.695	DOWNSTREAM CG34162 EXON CR42743
2L	2433315	2L_2433315_SNP [dm3] 2L_2433315_SNP [dm6]	T	G	2.192e^-4	0.695	INTRON dpp
2L	1287912	2L_1287912_SNP [dm3] 2L_1287912_SNP [dm6]	C	T	2.193e^-4	0.695	INTRON robo3
2L	2435535	2L_2435535_SNP [dm3] 2L_2435535_SNP [dm6]	G	T	2.195e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	16949905	3L_16949905_INS [dm3] 3L_16956805_INS [dm6]	A	AA	2.197e^-4	0.695	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	16949908	3L_16949908_SNP [dm3] 3L_16956808_SNP [dm6]	C	T	2.197e^-4	0.695	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3R	13928311	3R_13928311_SNP [dm3] 3R_18102589_SNP [dm6]	T	A	2.199e^-4	0.695	INTRON sr
3L	10230627	3L_10230627_SNP [dm3] 3L_10237527_SNP [dm6]	A	C	2.204e^-4	0.695	DOWNSTREAM CR44542 INTERGENIC
2L	8990976	2L_8990976_SNP [dm3] 2L_8990976_SNP [dm6]	C	T	2.207e^-4	0.695	UPSTREAM CG9555 INTERGENIC
2L	3008394	2L_3008394_INS [dm3] 2L_3008394_INS [dm6]	T	TGTAT	2.208e^-4	0.695	INTRON CG17265
3L	8452615	3L_8452615_SNP [dm3] 3L_8459515_SNP [dm6]	A	T	2.214e^-4	0.695	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9947631	3L_9947631_SNP [dm3] 3L_9954531_SNP [dm6]	T	C	2.220e^-4	0.695	INTRON CG34356
3L	10449786	3L_10449786_SNP [dm3] 3L_10456686_SNP [dm6]	T	C	2.224e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1675465	3L_1675465_SNP [dm3] 3L_1675465_SNP [dm6]	G	A	2.226e^-4	0.695	INTRON CG7991	TF binding site mE1_TFBS_HSA
3L	9997264	3L_9997264_SNP [dm3] 3L_10004164_SNP [dm6]	T	C	2.227e^-4	0.695	INTRON dpr6
2R	11170012	2R_11170012_SNP [dm3] 2R_15282507_SNP [dm6]	G	A	2.230e^-4	0.695	INTRON Trpm
2L	15224998	2L_15224998_SNP [dm3] 2L_15224998_SNP [dm6]	T	G	2.233e^-4	0.695	INTERGENIC
3R	25140268	3R_25140268_SNP [dm3] 3R_29314546_SNP [dm6]	T	G	2.234e^-4	0.695	DOWNSTREAM Cnx99A INTERGENIC
2L	21942334	2L_21942334_DEL [dm3] 2L_21942334_DEL [dm6]	GG	G	2.234e^-4	0.695	INTERGENIC	transposable element FlyBase
2R	14040574	2R_14040574_SNP [dm3] 2R_18153069_SNP [dm6]	G	A	2.240e^-4	0.695	SYNONYMOUS_CODING adp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16447826	2R_16447826_SNP [dm3] 2R_20560321_SNP [dm6]	A	T	2.244e^-4	0.695	DOWNSTREAM lms INTRON Mgat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13928333	3R_13928333_SNP [dm3] 3R_18102611_SNP [dm6]	C	A	2.247e^-4	0.695	INTRON sr
2R	5849789	2R_5849789_SNP [dm3] 2R_9962284_SNP [dm6]	T	C	2.250e^-4	0.695	SYNONYMOUS_CODING Pal1	TF binding site mE1_TFBS_cad
2L	13437544	2L_13437544_SNP [dm3] 2L_13437544_SNP [dm6]	A	G	2.257e^-4	0.695	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3L	1675670	3L_1675670_SNP [dm3] 3L_1675670_SNP [dm6]	G	A	2.258e^-4	0.695	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22170009	2L_22170009_SNP [dm3] 2L_22170009_SNP [dm6]	A	T	2.283e^-4	0.695	UPSTREAM Clamp EXON CR44809	TF binding site BDTNP1_TFBS_hb
2L	22067278	2L_22067278_SNP [dm3] 2L_22067278_SNP [dm6]	G	A	2.284e^-4	0.695	DOWNSTREAM CR31700 INTERGENIC
3L	5005845	3L_5005845_SNP [dm3] 3L_5005845_SNP [dm6]	C	T	2.285e^-4	0.695	INTRON Con
2L	5838004	2L_5838004_SNP [dm3] 2L_5838004_SNP [dm6]	G	T	2.289e^-4	0.695	INTRON TrissinR
2L	7571670	2L_7571670_DEL [dm3] 2L_7571670_DEL [dm6]	TT	T	2.290e^-4	0.695	INTRON RapGAP1
3R	19462653	3R_19462653_SNP [dm3] 3R_23636931_SNP [dm6]	G	C	2.294e^-4	0.695	INTRON CG31145
2R	19915719	2R_19915719_INS [dm3] 2R_24028196_INS [dm6]	A	ACTTTTTATA	2.294e^-4	0.695	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5837988	2L_5837988_SNP [dm3] 2L_5837988_SNP [dm6]	A	G	2.295e^-4	0.695	INTRON TrissinR
3R	14641529	3R_14641529_SNP [dm3] 3R_18815807_SNP [dm6]	C	T	2.315e^-4	0.695	INTRON CG18208
3L	13023895	3L_13023895_SNP [dm3] 3L_13030795_SNP [dm6]	A	C	2.316e^-4	0.695	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19378101	2R_19378101_SNP [dm3] 2R_23490578_SNP [dm6]	T	C	2.320e^-4	0.695	SYNONYMOUS_CODING CG43795	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	8452611	3L_8452611_SNP [dm3] 3L_8459511_SNP [dm6]	C	A	2.326e^-4	0.695	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9526703	3L_9526703_SNP [dm3] 3L_9533603_SNP [dm6]	C	A	2.326e^-4	0.695	INTERGENIC
2L	19241110	2L_19241110_DEL [dm3] 2L_19241110_DEL [dm6]	GGTCGTGAAATTTATGTCCT...	G	2.327e^-4	0.695	INTERGENIC
2R	4588231	2R_4588231_DEL [dm3] 2R_8700726_DEL [dm6]	ATA	GC	2.334e^-4	0.695	UTR_3_PRIME CG8584
2R	782454	2R_782454_SNP [dm3] 2R_4894949_SNP [dm6]	C	T	2.336e^-4	0.695	DOWNSTREAM CG44102 INTERGENIC	transposable element FlyBase
3R	9722990	3R_9722990_SNP [dm3] 3R_13897268_SNP [dm6]	A	T	2.337e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10280353	2L_10280353_SNP [dm3] 2L_10280353_SNP [dm6]	T	A	2.338e^-4	0.695	INTRON CG34043
3R	23253397	3R_23253397_SNP [dm3] 3R_27427675_SNP [dm6]	G	A	2.338e^-4	0.695	INTRON side
X	20151407	X_20151407_SNP [dm3] X_20280380_SNP [dm6]	G	A	2.342e^-4	0.695	INTERGENIC
2R	17722078	2R_17722078_SNP [dm3] 2R_21834573_SNP [dm6]	G	C	2.343e^-4	0.695	DOWNSTREAM CG4377 INTRON CG4363
X	286373	X_286373_SNP [dm3] X_392340_SNP [dm6]	C	A	2.350e^-4	0.695	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1291679	2L_1291679_SNP [dm3] 2L_1291679_SNP [dm6]	A	T	2.351e^-4	0.695	INTRON robo3
2R	611560	2R_611560_SNP [dm3] 2R_4724055_SNP [dm6]	G	C	2.352e^-4	0.695	INTRON Nipped-B	transposable element FlyBase
2R	4458819	2R_4458819_SNP [dm3] 2R_8571314_SNP [dm6]	A	C	2.354e^-4	0.695	NON_SYNONYMOUS_CODING Cyp6a13
2L	10981415	2L_10981415_SNP [dm3] 2L_10981415_SNP [dm6]	G	A	2.355e^-4	0.695	SYNONYMOUS_CODING SCAR DOWNSTREAM piwi	TF binding site mE1_TFBS_cad
3L	6824200	3L_6824200_SNP [dm3] 3L_6831100_SNP [dm6]	T	A	2.367e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14528527	X_14528527_SNP [dm3] X_14634494_SNP [dm6]	A	C	2.369e^-4	0.695	INTRON NetA
X	12170129	X_12170129_SNP [dm3] X_12276096_SNP [dm6]	A	G	2.383e^-4	0.695	DOWNSTREAM CG45603 INTRON Ten-a
3L	3177647	3L_3177647_SNP [dm3] 3L_3177647_SNP [dm6]	T	A	2.388e^-4	0.695	SYNONYMOUS_CODING CG14964
2R	15108661	2R_15108661_SNP [dm3] 2R_19221156_SNP [dm6]	C	T	2.392e^-4	0.695	INTRON hppy
3L	11396208	3L_11396208_SNP [dm3] 3L_11403108_SNP [dm6]	A	G	2.399e^-4	0.695	INTERGENIC
2L	5184419	2L_5184419_SNP [dm3] 2L_5184419_SNP [dm6]	A	G	2.404e^-4	0.695	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3R	20336372	3R_20336372_SNP [dm3] 3R_24510650_SNP [dm6]	T	C	2.416e^-4	0.695	INTRON nAChRbeta2
2R	14370344	2R_14370344_SNP [dm3] 2R_18482839_SNP [dm6]	G	C	2.417e^-4	0.695	INTRON CG30116
2L	9346891	2L_9346891_INS [dm3] 2L_9346891_INS [dm6]	A	AC	2.418e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	84528	2L_84528_SNP [dm3] 2L_84528_SNP [dm6]	C	T	2.428e^-4	0.695	INTRON net
X	5969054	X_5969054_SNP [dm3] X_6075021_SNP [dm6]	C	T	2.430e^-4	0.695	UPSTREAM Tsp5D INTERGENIC
3R	20663211	3R_20663211_SNP [dm3] 3R_24837489_SNP [dm6]	G	T	2.433e^-4	0.695	INTRON sosie
3L	13897100	3L_13897100_SNP [dm3] 3L_13904000_SNP [dm6]	A	T	2.444e^-4	0.695	UPSTREAM dysc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13437556	2L_13437556_SNP [dm3] 2L_13437556_SNP [dm6]	G	A	2.447e^-4	0.695	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2R	19360497	2R_19360497_SNP [dm3] 2R_23472974_SNP [dm6]	G	A	2.448e^-4	0.695	SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	10795319	3R_10795319_SNP [dm3] 3R_14969597_SNP [dm6]	C	T	2.450e^-4	0.695	INTERGENIC
2L	1064431	2L_1064431_SNP [dm3] 2L_1064431_SNP [dm6]	G	C	2.450e^-4	0.695	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9635443	2R_9635443_SNP [dm3] 2R_13747938_SNP [dm6]	G	A	2.453e^-4	0.695	UTR_3_PRIME fas
2L	13108512	2L_13108512_SNP [dm3] 2L_13108512_SNP [dm6]	T	C	2.455e^-4	0.695	SYNONYMOUS_CODING CG5142
2R	836309	2R_836309_SNP [dm3] 2R_4948804_SNP [dm6]	G	C	2.459e^-4	0.695	INTRON Ir41a
2L	13063925	2L_13063925_SNP [dm3] 2L_13063925_SNP [dm6]	A	C	2.464e^-4	0.695	INTERGENIC
3R	18892942	3R_18892942_SNP [dm3] 3R_23067220_SNP [dm6]	T	A	2.469e^-4	0.695	START_GAINED CG17111 UTR_5_PRIME CG17111
2L	1635381	2L_1635381_SNP [dm3] 2L_1635381_SNP [dm6]	G	T	2.470e^-4	0.695	INTERGENIC
2R	13192617	2R_13192617_SNP [dm3] 2R_17305112_SNP [dm6]	T	C	2.475e^-4	0.695	INTRON mbl
2R	14191097	2R_14191097_SNP [dm3] 2R_18303592_SNP [dm6]	C	G	2.476e^-4	0.695	SPLICE_SITE_REGION CG14505 UTR_3_PRIME CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4163639	3L_4163639_SNP [dm3] 3L_4163639_SNP [dm6]	T	G	2.483e^-4	0.695	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	2.485e^-4	0.695	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	14662699	2L_14662699_SNP [dm3] 2L_14662699_SNP [dm6]	A	T	2.486e^-4	0.695	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15345739	3R_15345739_INS [dm3] 3R_19520017_INS [dm6]	C	CGTC	2.489e^-4	0.695	INTRON Dys
X	3258020	X_3258020_SNP [dm3] X_3363987_SNP [dm6]	T	C	2.495e^-4	0.695	INTERGENIC
2L	2435558	2L_2435558_SNP [dm3] 2L_2435558_SNP [dm6]	T	G	2.495e^-4	0.695	INTRON dpp	TF binding site mE1_TFBS_cnc
3R	21643707	3R_21643707_SNP [dm3] 3R_25817985_SNP [dm6]	C	G	2.498e^-4	0.695	INTERGENIC
3R	18017693	3R_18017693_SNP [dm3] 3R_22191971_SNP [dm6]	A	G	2.501e^-4	0.695	INTRON SKIP
2L	10980689	2L_10980689_SNP [dm3] 2L_10980689_SNP [dm6]	G	A	2.507e^-4	0.695	SYNONYMOUS_CODING SCAR	TF binding site mE1_TFBS_cad
3L	10585891	3L_10585891_INS [dm3] 3L_10592791_INS [dm6]	A	AC	2.508e^-4	0.695	UTR_3_PRIME A2bp1
3R	14641455	3R_14641455_SNP [dm3] 3R_18815733_SNP [dm6]	T	G	2.510e^-4	0.695	INTRON CG18208
2L	2438431	2L_2438431_SNP [dm3] 2L_2438431_SNP [dm6]	G	A	2.514e^-4	0.695	INTRON dpp	regulatory region REDfly_CRMs
2R	6146011	2R_6146011_SNP [dm3] 2R_10258506_SNP [dm6]	T	A	2.517e^-4	0.695	INTRON CG12911	TF binding site mE1_TFBS_cad
2R	17722117	2R_17722117_SNP [dm3] 2R_21834612_SNP [dm6]	T	C	2.518e^-4	0.695	DOWNSTREAM CG4377 INTRON CG4363
3L	1588765	3L_1588765_SNP [dm3] 3L_1588765_SNP [dm6]	A	T	2.521e^-4	0.695	UTR_5_PRIME CG13917 INTRON CG13917
2L	3345056	2L_3345056_SNP [dm3] 2L_3345056_SNP [dm6]	C	G	2.522e^-4	0.695	INTRON E23
2L	4942487	2L_4942487_SNP [dm3] 2L_4942487_SNP [dm6]	G	T	2.523e^-4	0.695	UPSTREAM CG14044 INTERGENIC
X	2706369	X_2706369_INS [dm3] X_2812336_INS [dm6]	C	CC	2.525e^-4	0.695	INTRON kirre
X	17551083	X_17551083_SNP [dm3] X_17657050_SNP [dm6]	T	A	2.532e^-4	0.695	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3184992	3L_3184992_SNP [dm3] 3L_3184992_SNP [dm6]	A	G	2.541e^-4	0.695	UTR_3_PRIME Girdin UPSTREAM CG42494 INTRON CG42494
X	19360244	X_19360244_SNP [dm3] X_19466211_SNP [dm6]	C	T	2.549e^-4	0.695	SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_cad
3R	14437361	3R_14437361_SNP [dm3] 3R_18611639_SNP [dm6]	T	A	2.553e^-4	0.695	INTRON qin & 1 other
2R	11669139	2R_11669139_SNP [dm3] 2R_15781634_SNP [dm6]	C	T	2.555e^-4	0.695	INTRON Zasp52
3R	23755529	3R_23755529_SNP [dm3] 3R_27929807_SNP [dm6]	A	C	2.562e^-4	0.695	UTR_5_PRIME mino INTRON mino	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12119447	2L_12119447_SNP [dm3] 2L_12119447_SNP [dm6]	C	A	2.563e^-4	0.695	INTRON CG17211
3R	14641320	3R_14641320_SNP [dm3] 3R_18815598_SNP [dm6]	A	T	2.567e^-4	0.695	INTRON CG18208
3L	4163629	3L_4163629_SNP [dm3] 3L_4163629_SNP [dm6]	A	G	2.577e^-4	0.695	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1033494	3L_1033494_DEL [dm3] 3L_1033494_DEL [dm6]	TCTACGT	T	2.579e^-4	0.695	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	817746	2R_817746_SNP [dm3] 2R_4930241_SNP [dm6]	G	A	2.581e^-4	0.695	INTRON Ir41a	transposable element FlyBase
X	21158897	X_21158897_SNP [dm3] X_21287870_SNP [dm6]	G	A	2.581e^-4	0.695	SYNONYMOUS_CODING CG1494
2R	9977712	2R_9977712_SNP [dm3] 2R_14090207_SNP [dm6]	A	C	2.581e^-4	0.695	UPSTREAM CG42287 & 1 other INTRON Prosap
X	7957758	X_7957758_SNP [dm3] X_8063725_SNP [dm6]	A	T	2.582e^-4	0.695	INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10422220	2L_10422220_SNP [dm3] 2L_10422220_SNP [dm6]	C	T	2.582e^-4	0.695	SYNONYMOUS_CODING pie	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24830178	3R_24830178_SNP [dm3] 3R_29004456_SNP [dm6]	A	C	2.583e^-4	0.695	INTRON wat
2L	16133895	2L_16133895_SNP [dm3] 2L_16133895_SNP [dm6]	A	T	2.587e^-4	0.695	SYNONYMOUS_CODING CG4892 DOWNSTREAM CG34168
2L	9229187	2L_9229187_SNP [dm3] 2L_9229187_SNP [dm6]	T	A	2.587e^-4	0.695	INTRON tai
3L	3775189	3L_3775189_DEL [dm3] 3L_3775189_DEL [dm6]	AC	A	2.588e^-4	0.695	INTRON CG32264
3R	14437347	3R_14437347_SNP [dm3] 3R_18611625_SNP [dm6]	T	A	2.592e^-4	0.695	INTRON qin & 1 other
2L	1287836	2L_1287836_SNP [dm3] 2L_1287836_SNP [dm6]	A	C	2.593e^-4	0.695	INTRON robo3
3R	24496358	3R_24496358_SNP [dm3] 3R_28670636_SNP [dm6]	A	T	2.604e^-4	0.696	UPSTREAM CG9989 DOWNSTREAM CG33346 INTERGENIC
3L	10881014	3L_10881014_DEL [dm3] 3L_10887914_DEL [dm6]	ATACA	A	2.608e^-4	0.696	INTERGENIC
2L	14893814	2L_14893814_SNP [dm3] 2L_14893814_SNP [dm6]	A	T	2.612e^-4	0.696	INTERGENIC
2L	1063012	2L_1063012_SNP [dm3] 2L_1063012_SNP [dm6]	T	A	2.614e^-4	0.696	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	595688	2R_595688_SNP [dm3] 2R_4708183_SNP [dm6]	A	T	2.617e^-4	0.696	INTRON Nipped-B	transposable element FlyBase
3R	19977540	3R_19977540_SNP [dm3] 3R_24151818_SNP [dm6]	G	A	2.620e^-4	0.696	UPSTREAM CG6178 INTRON p38a
3R	25405204	3R_25405204_SNP [dm3] 3R_29579482_SNP [dm6]	C	A	2.629e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12846506	3L_12846506_SNP [dm3] 3L_12853406_SNP [dm6]	A	G	2.642e^-4	0.699	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3R	26184633	3R_26184633_INS [dm3] 3R_30358911_INS [dm6]	T	TT	2.649e^-4	0.699	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22101048	2L_22101048_DEL [dm3] 2L_22101048_DEL [dm6]	TCTT	T	2.655e^-4	0.699	INTERGENIC
2R	9972562	2R_9972562_SNP [dm3] 2R_14085057_SNP [dm6]	C	A	2.659e^-4	0.699	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	11874983	3R_11874983_SNP [dm3] 3R_16049261_SNP [dm6]	T	C	2.665e^-4	0.699	SYNONYMOUS_CODING ird5 UPSTREAM CG5013 EXON CR45212	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	593653	2R_593653_SNP [dm3] 2R_4706148_SNP [dm6]	G	T	2.671e^-4	0.699	INTRON Nipped-B
2R	592509	2R_592509_SNP [dm3] 2R_4705004_SNP [dm6]	T	C	2.673e^-4	0.699	INTRON Nipped-B
2R	5853368	2R_5853368_SNP [dm3] 2R_9965863_SNP [dm6]	G	A	2.687e^-4	0.699	UPSTREAM CG1418 INTERGENIC
3R	24496359	3R_24496359_INS [dm3] 3R_28670637_INS [dm6]	G	GGGT	2.687e^-4	0.699	UPSTREAM CG9989 DOWNSTREAM CG33346 INTERGENIC
2L	3102164	2L_3102164_SNP [dm3] 2L_3102164_SNP [dm6]	C	T	2.689e^-4	0.699	INTRON toc
2L	2438263	2L_2438263_SNP [dm3] 2L_2438263_SNP [dm6]	C	T	2.691e^-4	0.699	INTRON dpp	regulatory region REDfly_CRMs
3L	5147146	3L_5147146_SNP [dm3] 3L_5154046_SNP [dm6]	T	C	2.692e^-4	0.699	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
3L	16934460	3L_16934460_SNP [dm3] 3L_16941360_SNP [dm6]	C	A	2.699e^-4	0.699	INTRON Cpr73D
3L	1033519	3L_1033519_SNP [dm3] 3L_1033519_SNP [dm6]	G	A	2.703e^-4	0.699	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18017712	3R_18017712_SNP [dm3] 3R_22191990_SNP [dm6]	A	T	2.711e^-4	0.699	INTRON SKIP
2R	14192210	2R_14192210_SNP [dm3] 2R_18304705_SNP [dm6]	A	C	2.712e^-4	0.699	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11993796	3R_11993796_SNP [dm3] 3R_16168074_SNP [dm6]	C	T	2.717e^-4	0.699	SYNONYMOUS_CODING CG6006 DOWNSTREAM CR43472	TF binding site BDTNP1_TFBS_twi
3L	8799255	3L_8799255_SNP [dm3] 3L_8806155_SNP [dm6]	C	T	2.723e^-4	0.699	SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2276688	2L_2276688_SNP [dm3] 2L_2276688_SNP [dm6]	G	T	2.727e^-4	0.699	INTRON CR43753
X	6818791	X_6818791_SNP [dm3] X_6924758_SNP [dm6]	T	A	2.731e^-4	0.699	INTRON CG14431
2R	2863875	2R_2863875_SNP [dm3] 2R_6976370_SNP [dm6]	A	C	2.740e^-4	0.699	UTR_3_PRIME vimar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9413364	2L_9413364_SNP [dm3] 2L_9413364_SNP [dm6]	C	T	2.742e^-4	0.699	INTRON Shawl
2R	2873579	2R_2873579_SNP [dm3] 2R_6986074_SNP [dm6]	A	T	2.746e^-4	0.699	UTR_5_PRIME CG17002 UPSTREAM vimar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1033535	3L_1033535_DEL [dm3] 3L_1033535_DEL [dm6]	TT	T	2.750e^-4	0.699	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1033542	3L_1033542_DEL [dm3] 3L_1033542_DEL [dm6]	ATAG	A	2.750e^-4	0.699	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13678760	2R_13678760_SNP [dm3] 2R_17791255_SNP [dm6]	A	G	2.752e^-4	0.699	INTRON CG5033	TF binding site mE1_TFBS_sens
2R	6145634	2R_6145634_SNP [dm3] 2R_10258129_SNP [dm6]	G	C	2.757e^-4	0.699	INTRON CG12911	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19841762	3R_19841762_SNP [dm3] 3R_24016040_SNP [dm6]	A	C	2.764e^-4	0.699	INTRON KrT95D
3L	3184694	3L_3184694_SNP [dm3] 3L_3184694_SNP [dm6]	G	A	2.764e^-4	0.699	UTR_3_PRIME Girdin UPSTREAM CG42494 INTRON CG42494
2L	2687117	2L_2687117_SNP [dm3] 2L_2687117_SNP [dm6]	A	G	2.768e^-4	0.699	INTRON CG31690
X	2705545	X_2705545_SNP [dm3] X_2811512_SNP [dm6]	A	G	2.775e^-4	0.699	DOWNSTREAM CG12498 INTRON kirre
2R	835891	2R_835891_SNP [dm3] 2R_4948386_SNP [dm6]	C	G	2.778e^-4	0.699	INTRON Ir41a
3R	21017349	3R_21017349_SNP [dm3] 3R_25191627_SNP [dm6]	C	T	2.779e^-4	0.699	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13495652	3L_13495652_SNP [dm3] 3L_13502552_SNP [dm6]	G	A	2.781e^-4	0.699	UPSTREAM Spt20 DOWNSTREAM Tgi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12170034	X_12170034_SNP [dm3] X_12276001_SNP [dm6]	A	G	2.781e^-4	0.699	DOWNSTREAM CG45603 INTRON Ten-a
2R	13193425	2R_13193425_SNP [dm3] 2R_17305920_SNP [dm6]	T	A	2.783e^-4	0.699	DOWNSTREAM CR43661 INTRON mbl
3L	9789612	3L_9789612_SNP [dm3] 3L_9796512_SNP [dm6]	T	A	2.785e^-4	0.699	INTRON Zasp67
2L	5839966	2L_5839966_SNP [dm3] 2L_5839966_SNP [dm6]	C	T	2.787e^-4	0.699	INTRON TrissinR
X	5970337	X_5970337_SNP [dm3] X_6076304_SNP [dm6]	T	A	2.790e^-4	0.699	UTR_3_PRIME CG4666
3L	10883335	3L_10883335_SNP [dm3] 3L_10890235_SNP [dm6]	T	C	2.796e^-4	0.699	SYNONYMOUS_CODING Cpr67Fa1
2L	5387515	2L_5387515_SNP [dm3] 2L_5387515_SNP [dm6]	C	G	2.799e^-4	0.699	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22179209	2L_22179209_SNP [dm3] 2L_22179209_SNP [dm6]	G	A	2.799e^-4	0.699	INTRON CG3635
X	14877574	X_14877574_SNP [dm3] X_14983541_SNP [dm6]	A	G	2.804e^-4	0.699	INTRON eag
3R	25532538	3R_25532538_SNP [dm3] 3R_29706816_SNP [dm6]	A	G	2.809e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	913706	3L_913706_SNP [dm3] 3L_913706_SNP [dm6]	G	C	2.811e^-4	0.699	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	593026	2R_593026_SNP [dm3] 2R_4705521_SNP [dm6]	G	A	2.816e^-4	0.699	INTRON Nipped-B	transposable element FlyBase
2R	575416	2R_575416_SNP [dm3] 2R_4687911_SNP [dm6]	C	A	2.826e^-4	0.699	INTERGENIC
3R	5170405	3R_5170405_INS [dm3] 3R_9344683_INS [dm6]	A	AA	2.826e^-4	0.699	INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12136599	X_12136599_INS [dm3] X_12242566_INS [dm6]	A	AA	2.828e^-4	0.699	INTRON Ten-a
3R	17925245	3R_17925245_SNP [dm3] 3R_22099523_SNP [dm6]	C	A	2.828e^-4	0.699	INTRON CG5778
3L	11133930	3L_11133930_SNP [dm3] 3L_11140830_SNP [dm6]	T	C	2.831e^-4	0.699	INTRON CG32082
3L	1033528	3L_1033528_SNP [dm3] 3L_1033528_SNP [dm6]	A	C	2.832e^-4	0.699	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9702992	2R_9702992_SNP [dm3] 2R_13815487_SNP [dm6]	C	T	2.836e^-4	0.699	INTRON stj
X	12550252	X_12550252_SNP [dm3] X_12656219_SNP [dm6]	T	C	2.841e^-4	0.699	INTRON CkIalpha
X	12550253	X_12550253_INS [dm3] X_12656220_INS [dm6]	G	GCAGTGTTGCGTTACCATAT...	2.841e^-4	0.699	INTRON CkIalpha
2R	8240006	2R_8240006_SNP [dm3] 2R_12352501_SNP [dm6]	C	T	2.843e^-4	0.699	SYNONYMOUS_CODING CG30047	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19926324	2R_19926324_SNP [dm3] 2R_24038801_SNP [dm6]	G	A	2.855e^-4	0.701	NON_SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1064875	2L_1064875_SNP [dm3] 2L_1064875_SNP [dm6]	C	T	2.862e^-4	0.701	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	11324827	2R_11324827_SNP [dm3] 2R_15437322_SNP [dm6]	C	T	2.864e^-4	0.701	INTRON CG43729
3L	11819983	3L_11819983_SNP [dm3] 3L_11826883_SNP [dm6]	C	T	2.867e^-4	0.701	UTR_3_PRIME CycA DOWNSTREAM CycA
2R	12702250	2R_12702250_SNP [dm3] 2R_16814745_SNP [dm6]	T	C	2.872e^-4	0.701	EXON CR44380
2L	19997359	2L_19997359_SNP [dm3] 2L_19997359_SNP [dm6]	G	T	2.876e^-4	0.702	INTRON CG43861
3R	23344698	3R_23344698_SNP [dm3] 3R_27518976_SNP [dm6]	G	A	2.899e^-4	0.706	INTERGENIC
3L	9184608	3L_9184608_SNP [dm3] 3L_9191508_SNP [dm6]	C	A	2.903e^-4	0.706	INTERGENIC
X	8053984	X_8053984_SNP [dm3] X_8159951_SNP [dm6]	C	G	2.926e^-4	0.706	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
2L	4334127	2L_4334127_SNP [dm3] 2L_4334127_SNP [dm6]	C	G	2.928e^-4	0.706	START_GAINED Atet UTR_5_PRIME Atet INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	18472549	X_18472549_SNP [dm3] X_18578516_SNP [dm6]	G	A	2.929e^-4	0.706	INTERGENIC
2L	10639269	2L_10639269_SNP [dm3] 2L_10639269_SNP [dm6]	C	A	2.931e^-4	0.706	UPSTREAM CG7329 & 1 other EXON CR45351
3L	14412415	3L_14412415_SNP [dm3] 3L_14419315_SNP [dm6]	A	G	2.935e^-4	0.706	INTRON bbg
3L	2950078	3L_2950078_SNP [dm3] 3L_2950078_SNP [dm6]	T	C	2.948e^-4	0.706	DOWNSTREAM CG32846 INTRON Shab
3R	6698246	3R_6698246_INS [dm3] 3R_10872524_INS [dm6]	A	AA	2.951e^-4	0.706	UPSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	887897	2L_887897_SNP [dm3] 2L_887897_SNP [dm6]	G	C	2.953e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16340900	2R_16340900_SNP [dm3] 2R_20453395_SNP [dm6]	C	A	2.953e^-4	0.706	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12386342	3R_12386342_SNP [dm3] 3R_16560620_SNP [dm6]	T	C	2.955e^-4	0.706	INTRON CG42342
2R	13283724	2R_13283724_SNP [dm3] 2R_17396219_SNP [dm6]	C	T	2.958e^-4	0.706	INTRON Sip1	TF binding site BDTNP1_TFBS_dl
3L	8633893	3L_8633893_SNP [dm3] 3L_8640793_SNP [dm6]	C	A	2.959e^-4	0.706	SYNONYMOUS_CODING Cpr66D
X	20356753	X_20356753_SNP [dm3] X_20485726_SNP [dm6]	A	T	2.960e^-4	0.706	UPSTREAM CG15461 INTRON RhoGAP19D
2L	19508813	2L_19508813_SNP [dm3] 2L_19508813_SNP [dm6]	C	A	2.961e^-4	0.706	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	2850188	3L_2850188_INS [dm3] 3L_2850188_INS [dm6]	A	AT	2.964e^-4	0.706	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2850189	3L_2850189_DEL [dm3] 3L_2850189_DEL [dm6]	GCTTAAAA	G	2.964e^-4	0.706	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22574806	3R_22574806_SNP [dm3] 3R_26749084_SNP [dm6]	T	C	2.975e^-4	0.708	INTERGENIC
X	1613296	X_1613296_SNP [dm3] X_1719263_SNP [dm6]	T	C	2.989e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	2873407	2R_2873407_SNP [dm3] 2R_6985902_SNP [dm6]	A	C	2.994e^-4	0.708	UPSTREAM CG17002 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10477896	2L_10477896_SNP [dm3] 2L_10477896_SNP [dm6]	G	A	2.999e^-4	0.708	INTRON RluA-2
2L	5614074	2L_5614074_SNP [dm3] 2L_5614074_SNP [dm6]	C	A	3.003e^-4	0.708	INTRON CG14010	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17551076	X_17551076_SNP [dm3] X_17657043_SNP [dm6]	G	A	3.017e^-4	0.708	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18602825	2R_18602825_SNP [dm3] 2R_22715320_SNP [dm6]	G	T	3.018e^-4	0.708	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2439088	2L_2439088_SNP [dm3] 2L_2439088_SNP [dm6]	A	C	3.021e^-4	0.708	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	5847752	2R_5847752_SNP [dm3] 2R_9960247_SNP [dm6]	C	T	3.023e^-4	0.708	NON_SYNONYMOUS_CODING Pal1 UPSTREAM CG15863	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17959446	2L_17959446_DEL [dm3] 2L_17959446_DEL [dm6]	AA	A	3.026e^-4	0.708	INTERGENIC
2R	11301696	2R_11301696_SNP [dm3] 2R_15414191_SNP [dm6]	G	A	3.045e^-4	0.708	INTRON CG43729
2R	18479916	2R_18479916_SNP [dm3] 2R_22592411_SNP [dm6]	C	G	3.045e^-4	0.708	UTR_5_PRIME dnr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	12615904	3L_12615904_SNP [dm3] 3L_12622804_SNP [dm6]	G	T	3.049e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1287890	2L_1287890_DEL [dm3] 2L_1287890_DEL [dm6]	TTTGTTAAAAT...	T	3.049e^-4	0.708	INTRON robo3
3L	18151701	3L_18151701_SNP [dm3] 3L_18158601_SNP [dm6]	T	G	3.057e^-4	0.708	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14050803	2L_14050803_SNP [dm3] 2L_14050803_SNP [dm6]	C	T	3.061e^-4	0.708	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2R	5400099	2R_5400099_SNP [dm3] 2R_9512594_SNP [dm6]	G	A	3.063e^-4	0.708	INTRON brp
3R	24496407	3R_24496407_SNP [dm3] 3R_28670685_SNP [dm6]	C	A	3.074e^-4	0.708	UPSTREAM CG9989 DOWNSTREAM CG33346 INTERGENIC
3L	16935930	3L_16935930_SNP [dm3] 3L_16942830_SNP [dm6]	A	G	3.075e^-4	0.708	START_GAINED Cpr73D UTR_5_PRIME Cpr73D	TF binding site mE1_TFBS_cad
3L	8474012	3L_8474012_SNP [dm3] 3L_8480912_SNP [dm6]	G	A	3.080e^-4	0.708	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12577096	3R_12577096_SNP [dm3] 3R_16751374_SNP [dm6]	T	C	3.089e^-4	0.708	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9370584	3L_9370584_SNP [dm3] 3L_9377484_SNP [dm6]	G	A	3.092e^-4	0.708	UPSTREAM CR43481 & 1 other DOWNSTREAM Hsp67Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1344146	2L_1344146_SNP [dm3] 2L_1344146_SNP [dm6]	T	A	3.096e^-4	0.708	NON_SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
2R	19094673	2R_19094673_SNP [dm3] 2R_23207150_SNP [dm6]	C	T	3.096e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	2278084	X_2278084_SNP [dm3] X_2384051_SNP [dm6]	G	C	3.098e^-4	0.708	INTRON PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18991078	3L_18991078_SNP [dm3] 3L_18997978_SNP [dm6]	A	G	3.099e^-4	0.708	UTR_3_PRIME CG3808 INTRON CG18135
X	12673456	X_12673456_INS [dm3] X_12779423_INS [dm6]	C	CACAC	3.103e^-4	0.708	INTRON CG32647
3L	10610989	3L_10610989_SNP [dm3] 3L_10617889_SNP [dm6]	A	G	3.105e^-4	0.708	INTERGENIC
3R	22979292	3R_22979292_SNP [dm3] 3R_27153570_SNP [dm6]	T	C	3.110e^-4	0.708	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
X	14106108	X_14106108_SNP [dm3] X_14212075_SNP [dm6]	C	T	3.118e^-4	0.708	UPSTREAM l_1_G0007 & 1 other INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1658925	2L_1658925_SNP [dm3] 2L_1658925_SNP [dm6]	A	T	3.119e^-4	0.708	INTRON chinmo	TF binding site mE1_TFBS_Trl
X	2703913	X_2703913_SNP [dm3] X_2809880_SNP [dm6]	G	A	3.120e^-4	0.708	UPSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10575192	2L_10575192_SNP [dm3] 2L_10575192_SNP [dm6]	G	T	3.122e^-4	0.708	DOWNSTREAM w-cup INTRON Trim9
3L	17248899	3L_17248899_SNP [dm3] 3L_17255799_SNP [dm6]	A	C	3.124e^-4	0.708	INTRON CR43870	TF binding site BDTNP1_TFBS_dl
2R	17622422	2R_17622422_SNP [dm3] 2R_21734917_SNP [dm6]	T	G	3.126e^-4	0.708	INTERGENIC
2R	6152146	2R_6152146_INS [dm3] 2R_10264641_INS [dm6]	T	AAATATATACATACA...	3.131e^-4	0.708	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4094891	2R_4094891_SNP [dm3] 2R_8207386_SNP [dm6]	C	T	3.133e^-4	0.708	INTRON LRP1
3L	4807736	3L_4807736_SNP [dm3] 3L_4807736_SNP [dm6]	C	T	3.135e^-4	0.708	SYNONYMOUS_CODING Dhc64C UPSTREAM CG18808
2R	5853235	2R_5853235_SNP [dm3] 2R_9965730_SNP [dm6]	C	T	3.136e^-4	0.708	UPSTREAM CG1418 INTERGENIC
2L	13432007	2L_13432007_INS [dm3] 2L_13432007_INS [dm6]	C	CC	3.145e^-4	0.708	INTRON CG42784
2L	20329679	2L_20329679_SNP [dm3] 2L_20329679_SNP [dm6]	T	C	3.147e^-4	0.708	INTRON spir
2L	916135	2L_916135_SNP [dm3] 2L_916135_SNP [dm6]	C	T	3.149e^-4	0.708	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	24492967	3R_24492967_SNP [dm3] 3R_28667245_SNP [dm6]	G	T	3.158e^-4	0.708	INTERGENIC
3R	11874520	3R_11874520_SNP [dm3] 3R_16048798_SNP [dm6]	T	G	3.160e^-4	0.708	SYNONYMOUS_CODING ird5 UPSTREAM CG5013 DOWNSTREAM CR45212	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12846573	3L_12846573_SNP [dm3] 3L_12853473_SNP [dm6]	A	T	3.168e^-4	0.708	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	8639199	3L_8639199_SNP [dm3] 3L_8646099_SNP [dm6]	C	A	3.172e^-4	0.708	SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2322655	X_2322655_SNP [dm3] X_2428622_SNP [dm6]	T	C	3.172e^-4	0.708	SYNONYMOUS_CODING gt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6962818	2R_6962818_DEL [dm3] 2R_11075313_DEL [dm6]	GGGTATATCCACTTTAGAG...	G	3.173e^-4	0.708	INTRON luna
2L	10793873	2L_10793873_INS [dm3] 2L_10793873_INS [dm6]	A	ATA	3.181e^-4	0.708	INTRON CG31869
3R	26141289	3R_26141289_SNP [dm3] 3R_30315567_SNP [dm6]	C	G	3.184e^-4	0.708	INTRON hdc
2L	8991276	2L_8991276_SNP [dm3] 2L_8991276_SNP [dm6]	A	T	3.191e^-4	0.708	UPSTREAM CG9555 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19084403	3R_19084403_DEL [dm3] 3R_23258681_DEL [dm6]	GG	G	3.194e^-4	0.708	UPSTREAM CG13827 & 1 other INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11169349	2R_11169349_SNP [dm3] 2R_15281844_SNP [dm6]	C	G	3.194e^-4	0.708	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8997155	2L_8997155_SNP [dm3] 2L_8997155_SNP [dm6]	A	G	3.196e^-4	0.708	UPSTREAM CG18661 INTRON alien	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	4726918	2L_4726918_SNP [dm3] 2L_4726918_SNP [dm6]	A	T	3.203e^-4	0.708	INTERGENIC
2R	15770319	2R_15770319_SNP [dm3] 2R_19882814_SNP [dm6]	G	C	3.207e^-4	0.708	INTERGENIC
3R	14641470	3R_14641470_DEL [dm3] 3R_18815748_DEL [dm6]	AA	A	3.209e^-4	0.708	INTRON CG18208
2L	2439113	2L_2439113_SNP [dm3] 2L_2439113_SNP [dm6]	G	A	3.211e^-4	0.708	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	19550713	2L_19550713_SNP [dm3] 2L_19550713_SNP [dm6]	A	C	3.212e^-4	0.708	INTRON Tep4
2R	3307469	2R_3307469_SNP [dm3] 2R_7419964_SNP [dm6]	C	A	3.217e^-4	0.708	UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9413245	2L_9413245_SNP [dm3] 2L_9413245_SNP [dm6]	A	G	3.224e^-4	0.708	INTRON Shawl
X	19666811	X_19666811_SNP [dm3] X_19772778_SNP [dm6]	T	A	3.227e^-4	0.708	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16934522	3L_16934522_SNP [dm3] 3L_16941422_SNP [dm6]	T	C	3.228e^-4	0.708	INTRON Cpr73D
2L	11973059	2L_11973059_SNP [dm3] 2L_11973059_SNP [dm6]	A	T	3.229e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6885448	3R_6885448_SNP [dm3] 3R_11059726_SNP [dm6]	C	T	3.231e^-4	0.708	INTERGENIC
3L	1015463	3L_1015463_SNP [dm3] 3L_1015463_SNP [dm6]	G	C	3.231e^-4	0.708	INTRON trio
2R	15108567	2R_15108567_SNP [dm3] 2R_19221062_SNP [dm6]	G	T	3.240e^-4	0.708	INTRON hppy
3L	7310324	3L_7310324_SNP [dm3] 3L_7317224_SNP [dm6]	A	T	3.248e^-4	0.708	INTERGENIC
3L	3180720	3L_3180720_SNP [dm3] 3L_3180720_SNP [dm6]	T	A	3.254e^-4	0.708	INTRON Girdin
3L	8466437	3L_8466437_SNP [dm3] 3L_8473337_SNP [dm6]	T	G	3.262e^-4	0.708	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad
X	18485213	X_18485213_SNP [dm3] X_18591180_SNP [dm6]	C	A	3.265e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13366732	3L_13366732_SNP [dm3] 3L_13373632_SNP [dm6]	C	G	3.270e^-4	0.708	INTERGENIC
2L	21958866	2L_21958866_SNP [dm3] 2L_21958866_SNP [dm6]	C	T	3.271e^-4	0.708	DOWNSTREAM CR44217 & 1 other EXON CR44803
3L	2214550	3L_2214550_SNP [dm3] 3L_2214550_SNP [dm6]	A	G	3.285e^-4	0.708	INTERGENIC
2L	1902707	2L_1902707_SNP [dm3] 2L_1902707_SNP [dm6]	C	T	3.290e^-4	0.708	INTRON CG7337
3L	9575293	3L_9575293_SNP [dm3] 3L_9582193_SNP [dm6]	G	A	3.292e^-4	0.708	INTRON CG42673
3L	8469601	3L_8469601_SNP [dm3] 3L_8476501_SNP [dm6]	T	A	3.293e^-4	0.708	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2433560	2L_2433560_SNP [dm3] 2L_2433560_SNP [dm6]	C	T	3.295e^-4	0.708	INTRON dpp
X	3257979	X_3257979_SNP [dm3] X_3363946_SNP [dm6]	T	A	3.297e^-4	0.708	INTERGENIC
2R	19925394	2R_19925394_SNP [dm3] 2R_24037871_SNP [dm6]	A	G	3.298e^-4	0.708	START_GAINED Not11 UTR_5_PRIME Not11 UPSTREAM IntS1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	896800	2L_896800_INS [dm3] 2L_896800_INS [dm6]	A	AGCCAAAACGATGCCA...	3.301e^-4	0.708	DOWNSTREAM CR45348 INTERGENIC
X	9685628	X_9685628_SNP [dm3] X_9791595_SNP [dm6]	C	T	3.314e^-4	0.708	INTRON CG32698
2L	1079041	2L_1079041_SNP [dm3] 2L_1079041_SNP [dm6]	T	G	3.318e^-4	0.708	SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
2R	6137745	2R_6137745_SNP [dm3] 2R_10250240_SNP [dm6]	G	A	3.324e^-4	0.708	DOWNSTREAM CG12914 INTRON CG12913 & 1 other
3L	8797613	3L_8797613_SNP [dm3] 3L_8804513_SNP [dm6]	C	T	3.329e^-4	0.708	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2R	11169344	2R_11169344_SNP [dm3] 2R_15281839_SNP [dm6]	G	T	3.329e^-4	0.708	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4163650	3L_4163650_SNP [dm3] 3L_4163650_SNP [dm6]	A	G	3.334e^-4	0.708	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5964469	X_5964469_SNP [dm3] X_6070436_SNP [dm6]	A	G	3.335e^-4	0.708	SYNONYMOUS_CODING Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_inv
2R	2866109	2R_2866109_SNP [dm3] 2R_6978604_SNP [dm6]	A	G	3.340e^-4	0.708	SPLICE_SITE_REGION vimar UPSTREAM CR44170 INTRON vimar
2L	859493	2L_859493_SNP [dm3] 2L_859493_SNP [dm6]	T	C	3.349e^-4	0.708	UPSTREAM CG13950 INTERGENIC
3L	4783133	3L_4783133_DEL [dm3] 3L_4783133_DEL [dm6]	TGGTAAATTTGT...	A	3.353e^-4	0.708	INTRON RhoGEF64C
2R	16988768	2R_16988768_SNP [dm3] 2R_21101263_SNP [dm6]	T	C	3.354e^-4	0.708	UTR_3_PRIME CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2429104	2L_2429104_INS [dm3] 2L_2429104_INS [dm6]	G	GC	3.354e^-4	0.708	INTRON dpp	TF binding site mE1_TFBS_cad
2L	20025555	2L_20025555_SNP [dm3] 2L_20025555_SNP [dm6]	T	C	3.354e^-4	0.708	NON_SYNONYMOUS_CODING CG10659
3R	18442224	3R_18442224_SNP [dm3] 3R_22616502_SNP [dm6]	C	A	3.358e^-4	0.708	UTR_3_PRIME EF-G2 UPSTREAM CG31161
2R	11665663	2R_11665663_SNP [dm3] 2R_15778158_SNP [dm6]	A	G	3.359e^-4	0.708	INTRON Zasp52
X	14476536	X_14476536_SNP [dm3] X_14582503_SNP [dm6]	T	A	3.364e^-4	0.708	NON_SYNONYMOUS_CODING mRpS25 DOWNSTREAM CG14414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12577200	3R_12577200_SNP [dm3] 3R_16751478_SNP [dm6]	A	C	3.366e^-4	0.708	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12550242	X_12550242_INS [dm3] X_12656209_INS [dm6]	T	TGGCTTGATAATGCACACG...	3.372e^-4	0.708	INTRON CkIalpha
3R	18017756	3R_18017756_SNP [dm3] 3R_22192034_SNP [dm6]	C	A	3.372e^-4	0.708	INTRON SKIP
2R	11169378	2R_11169378_SNP [dm3] 2R_15281873_SNP [dm6]	G	A	3.375e^-4	0.708	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7443644	2R_7443644_SNP [dm3] 2R_11556139_SNP [dm6]	C	T	3.375e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18721434	X_18721434_SNP [dm3] X_18827401_SNP [dm6]	G	A	3.376e^-4	0.708	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3R	10140762	3R_10140762_SNP [dm3] 3R_14315040_SNP [dm6]	T	C	3.378e^-4	0.708	SYNONYMOUS_CODING Crz UPSTREAM pr-set7 DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1080235	3L_1080235_INS [dm3] 3L_1080235_INS [dm6]	G	GG	3.378e^-4	0.708	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8139320	3L_8139320_SNP [dm3] 3L_8146220_SNP [dm6]	G	T	3.380e^-4	0.708	INTRON CG13676
2R	5079571	2R_5079571_SNP [dm3] 2R_9192066_SNP [dm6]	G	T	3.385e^-4	0.708	UTR_5_PRIME CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6813324	3R_6813324_SNP [dm3] 3R_10987602_SNP [dm6]	A	G	3.386e^-4	0.708	INTRON CG34114
2R	17743004	2R_17743004_SNP [dm3] 2R_21855499_SNP [dm6]	T	C	3.389e^-4	0.708	INTERGENIC
2R	4172401	2R_4172401_SNP [dm3] 2R_8284896_SNP [dm6]	G	A	3.389e^-4	0.708	INTERGENIC
3L	9914027	3L_9914027_SNP [dm3] 3L_9920927_SNP [dm6]	A	T	3.403e^-4	0.708	INTRON CG34356
2L	8991166	2L_8991166_SNP [dm3] 2L_8991166_SNP [dm6]	C	A	3.403e^-4	0.708	UPSTREAM CG9555 INTERGENIC
2R	10501158	2R_10501158_SNP [dm3] 2R_14613653_SNP [dm6]	T	C	3.407e^-4	0.708	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
3L	7854066	3L_7854066_SNP [dm3] 3L_7860966_SNP [dm6]	G	A	3.414e^-4	0.708	INTRON Pdp1
3R	2188729	3R_2188729_SNP [dm3] 3R_6363007_SNP [dm6]	A	C	3.414e^-4	0.708	NON_SYNONYMOUS_CODING CG42724 UTR_3_PRIME CG42724
2R	9704718	2R_9704718_SNP [dm3] 2R_13817213_SNP [dm6]	G	A	3.421e^-4	0.708	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7748995	2R_7748995_SNP [dm3] 2R_11861490_SNP [dm6]	A	G	3.423e^-4	0.708	DOWNSTREAM Mtor INTRON CG34230
3L	10663827	3L_10663827_DEL [dm3] 3L_10670727_DEL [dm6]	TATGT	T	3.430e^-4	0.708	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	14825823	2L_14825823_SNP [dm3] 2L_14825823_SNP [dm6]	T	G	3.433e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_inv
X	8142374	X_8142374_SNP [dm3] X_8248341_SNP [dm6]	A	T	3.436e^-4	0.708	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	19240785	2L_19240785_INS [dm3] 2L_19240785_INS [dm6]	C	CCCACACACTTTCACAC...	3.439e^-4	0.708	INTERGENIC
3L	3499565	3L_3499565_SNP [dm3] 3L_3499565_SNP [dm6]	T	G	3.440e^-4	0.708	INTRON CG42324
3R	25128864	3R_25128864_SNP [dm3] 3R_29303142_SNP [dm6]	G	A	3.442e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20836920	X_20836920_SNP [dm3] X_20965893_SNP [dm6]	A	G	3.450e^-4	0.708	UPSTREAM CG1304 INTERGENIC
3R	21697251	3R_21697251_SNP [dm3] 3R_25871529_SNP [dm6]	G	A	3.457e^-4	0.708	UTR_3_PRIME CG5890
2L	15745364	2L_15745364_SNP [dm3] 2L_15745364_SNP [dm6]	T	A	3.458e^-4	0.708	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	23206998	3L_23206998_SNP [dm3] 3L_23213898_SNP [dm6]	A	C	3.466e^-4	0.708	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8254450	2R_8254450_SNP [dm3] 2R_12366945_SNP [dm6]	T	C	3.468e^-4	0.708	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
3R	5187344	3R_5187344_SNP [dm3] 3R_9361622_SNP [dm6]	T	A	3.476e^-4	0.708	UTR_3_PRIME CG45050	TF binding site mE1_TFBS_kn
X	3712864	X_3712864_SNP [dm3] X_3818831_SNP [dm6]	G	A	3.478e^-4	0.708	UPSTREAM tRNA:CR32785 INTRON ec
2L	1063000	2L_1063000_SNP [dm3] 2L_1063000_SNP [dm6]	A	G	3.481e^-4	0.708	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13393811	2L_13393811_DEL [dm3] 2L_13393811_DEL [dm6]	CGTTTTGTC	C	3.484e^-4	0.708	UTR_3_PRIME RpL24 & 1 other DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad
3L	9184521	3L_9184521_DEL [dm3] 3L_9191421_DEL [dm6]	TATTCATCATACTT...	C	3.486e^-4	0.708	INTERGENIC
3L	6651066	3L_6651066_SNP [dm3] 3L_6657966_SNP [dm6]	G	T	3.492e^-4	0.708	INTERGENIC
2L	17600611	2L_17600611_DEL [dm3] 2L_17600611_DEL [dm6]	GTAGCTGTGGG...	G	3.492e^-4	0.708	INTRON Sytalpha
2L	9859457	2L_9859457_SNP [dm3] 2L_9859457_SNP [dm6]	C	A	3.499e^-4	0.708	INTRON nAChRalpha6
3L	10091656	3L_10091656_SNP [dm3] 3L_10098556_SNP [dm6]	C	A	3.499e^-4	0.708	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
X	6161558	X_6161558_SNP [dm3] X_6267525_SNP [dm6]	G	C	3.515e^-4	0.708	UPSTREAM Spt6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	22507442	3R_22507442_SNP [dm3] 3R_26681720_SNP [dm6]	C	T	3.516e^-4	0.708	UTR_5_PRIME beat-VII
2L	20030970	2L_20030970_SNP [dm3] 2L_20030970_SNP [dm6]	T	C	3.518e^-4	0.708	INTRON sNPF
3L	9184517	3L_9184517_SNP [dm3] 3L_9191417_SNP [dm6]	T	G	3.530e^-4	0.708	INTERGENIC
2L	8980855	2L_8980855_SNP [dm3] 2L_8980855_SNP [dm6]	C	T	3.531e^-4	0.708	NON_SYNONYMOUS_CODING CG18662 SPLICE_SITE_REGION CG18662 INTRON CG13101
2L	8081945	2L_8081945_SNP [dm3] 2L_8081945_SNP [dm6]	C	G	3.533e^-4	0.708	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8797616	3L_8797616_SNP [dm3] 3L_8804516_SNP [dm6]	A	G	3.534e^-4	0.708	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2L	13437558	2L_13437558_SNP [dm3] 2L_13437558_SNP [dm6]	A	C	3.542e^-4	0.708	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	14641316	3R_14641316_SNP [dm3] 3R_18815594_SNP [dm6]	G	A	3.542e^-4	0.708	INTRON CG18208
3L	14412363	3L_14412363_DEL [dm3] 3L_14419263_DEL [dm6]	ATCGA	A	3.548e^-4	0.708	INTRON bbg
X	19998537	X_19998537_SNP [dm3] X_20104504_SNP [dm6]	T	A	3.550e^-4	0.708	INTERGENIC
3L	10932519	3L_10932519_SNP [dm3] 3L_10939419_SNP [dm6]	G	A	3.551e^-4	0.708	INTERGENIC
X	19667113	X_19667113_SNP [dm3] X_19773080_SNP [dm6]	A	C	3.552e^-4	0.708	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3901293	2L_3901293_SNP [dm3] 2L_3901293_SNP [dm6]	A	G	3.561e^-4	0.708	INTRON capu
3L	1209609	3L_1209609_INS [dm3] 3L_1209609_INS [dm6]	A	AATAA	3.562e^-4	0.708	UPSTREAM LysC INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	23747464	3R_23747464_SNP [dm3] 3R_27921742_SNP [dm6]	T	C	3.564e^-4	0.708	SYNONYMOUS_CODING BCAS2 UPSTREAM CG12259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21935429	2L_21935429_SNP [dm3] 2L_21935429_SNP [dm6]	C	G	3.566e^-4	0.708	INTERGENIC
2R	10226529	2R_10226529_DEL [dm3] 2R_14339024_DEL [dm6]	CTTTGC	C	3.571e^-4	0.708	INTRON Shroom
3L	10088372	3L_10088372_SNP [dm3] 3L_10095272_SNP [dm6]	G	A	3.575e^-4	0.708	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	16340885	2R_16340885_SNP [dm3] 2R_20453380_SNP [dm6]	C	G	3.577e^-4	0.708	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15401198	X_15401198_SNP [dm3] X_15507165_SNP [dm6]	T	C	3.581e^-4	0.708	SYNONYMOUS_CODING Gmap UPSTREAM mir-283	TF binding site mE1_TFBS_HSA
3L	9789610	3L_9789610_SNP [dm3] 3L_9796510_SNP [dm6]	A	C	3.587e^-4	0.708	INTRON Zasp67
X	14884960	X_14884960_SNP [dm3] X_14990927_SNP [dm6]	G	T	3.589e^-4	0.708	INTRON eag
3L	7414547	3L_7414547_DEL [dm3] 3L_7421447_DEL [dm6]	TGGGAGGTGAG...	C	3.591e^-4	0.708	INTERGENIC
3L	1326867	3L_1326867_SNP [dm3] 3L_1326867_SNP [dm6]	T	A	3.593e^-4	0.708	INTRON Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	14351171	2R_14351171_SNP [dm3] 2R_18463666_SNP [dm6]	T	A	3.593e^-4	0.708	INTRON CG30116
3L	6651015	3L_6651015_DEL [dm3] 3L_6657915_DEL [dm6]	AA	C	3.597e^-4	0.708	INTERGENIC
X	16582269	X_16582269_SNP [dm3] X_16688236_SNP [dm6]	T	C	3.599e^-4	0.708	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15108614	2R_15108614_SNP [dm3] 2R_19221109_SNP [dm6]	C	T	3.599e^-4	0.708	INTRON hppy
3L	8465885	3L_8465885_INS [dm3] 3L_8472785_INS [dm6]	A	AGGATTATGGATAATATTAA...	3.602e^-4	0.708	DOWNSTREAM CG43163 & 1 other INTERGENIC
X	14476867	X_14476867_SNP [dm3] X_14582834_SNP [dm6]	A	G	3.606e^-4	0.708	SYNONYMOUS_CODING mRpS25 UPSTREAM nmdyn-D6 DOWNSTREAM CG14414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8254463	2R_8254463_SNP [dm3] 2R_12366958_SNP [dm6]	C	T	3.607e^-4	0.708	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
X	12170149	X_12170149_SNP [dm3] X_12276116_SNP [dm6]	T	G	3.618e^-4	0.709	DOWNSTREAM CG45603 INTRON Ten-a
2L	5103115	2L_5103115_SNP [dm3] 2L_5103115_SNP [dm6]	C	A	3.620e^-4	0.709	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21875578	X_21875578_SNP [dm3] X_22473742_SNP [dm6]	G	A	3.625e^-4	0.709	UTR_5_PRIME CG14618	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5824982	2L_5824982_SNP [dm3] 2L_5824982_SNP [dm6]	C	G	3.627e^-4	0.709	UTR_5_PRIME TrissinR
X	2319101	X_2319101_SNP [dm3] X_2425068_SNP [dm6]	C	G	3.646e^-4	0.709	UTR_3_PRIME CG32797
3R	24062097	3R_24062097_SNP [dm3] 3R_28236375_SNP [dm6]	A	G	3.646e^-4	0.709	INTRON CG34354	TF binding site mE1_TFBS_chinmo
2R	1007292	2R_1007292_SNP [dm3] 2R_5119787_SNP [dm6]	C	T	3.663e^-4	0.709	INTRON gus
X	3324644	X_3324644_INS [dm3] X_3430611_INS [dm6]	G	GG	3.667e^-4	0.709	INTRON CR44999 & 1 other
3R	19001250	3R_19001250_SNP [dm3] 3R_23175528_SNP [dm6]	C	G	3.676e^-4	0.709	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19140715	2R_19140715_SNP [dm3] 2R_23253192_SNP [dm6]	G	T	3.676e^-4	0.709	INTERGENIC
2L	2879208	2L_2879208_SNP [dm3] 2L_2879208_SNP [dm6]	G	T	3.677e^-4	0.709	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12576942	3R_12576942_SNP [dm3] 3R_16751220_SNP [dm6]	G	A	3.677e^-4	0.709	SYNONYMOUS_CODING CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10289476	2L_10289476_SNP [dm3] 2L_10289476_SNP [dm6]	G	A	3.681e^-4	0.709	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14881947	X_14881947_SNP [dm3] X_14987914_SNP [dm6]	C	G	3.685e^-4	0.709	INTRON eag	TF binding site BDTNP1_TFBS_dl
2L	19546323	2L_19546323_SNP [dm3] 2L_19546323_SNP [dm6]	G	A	3.688e^-4	0.709	SYNONYMOUS_CODING CG10337 DOWNSTREAM ref_2_P
X	5966961	X_5966961_SNP [dm3] X_6072928_SNP [dm6]	C	G	3.693e^-4	0.709	UTR_5_PRIME Tsp5D INTRON Tsp5D
2R	2747637	2R_2747637_SNP [dm3] 2R_6860132_SNP [dm6]	T	C	3.697e^-4	0.709	INTERGENIC
3R	13802390	3R_13802390_SNP [dm3] 3R_17976668_SNP [dm6]	A	C	3.701e^-4	0.709	INTRON cpo
3L	10591259	3L_10591259_SNP [dm3] 3L_10598159_SNP [dm6]	C	T	3.703e^-4	0.709	INTERGENIC
2L	1055621	2L_1055621_SNP [dm3] 2L_1055621_SNP [dm6]	A	G	3.706e^-4	0.709	INTRON S
2L	22969315	2L_22969315_DEL [dm3] 2L_23076583_DEL [dm6]	AGAATCAACTTTTGTTACA...	T	3.708e^-4	0.709	INTERGENIC
2R	4147007	2R_4147007_SNP [dm3] 2R_8259502_SNP [dm6]	T	G	3.710e^-4	0.709	SYNONYMOUS_CODING CG30369 UPSTREAM CG14759
2L	8999525	2L_8999525_SNP [dm3] 2L_8999525_SNP [dm6]	A	T	3.716e^-4	0.709	UTR_3_PRIME Try29F DOWNSTREAM CG18661 & 1 other	TF binding site mE1_TFBS_cad
X	16906236	X_16906236_SNP [dm3] X_17012203_SNP [dm6]	A	T	3.726e^-4	0.709	INTRON CG45002
3R	14641392	3R_14641392_SNP [dm3] 3R_18815670_SNP [dm6]	G	A	3.729e^-4	0.709	INTRON CG18208
3L	10495769	3L_10495769_SNP [dm3] 3L_10502669_SNP [dm6]	T	A	3.738e^-4	0.709	INTRON A2bp1
2R	5262147	2R_5262147_SNP [dm3] 2R_9374642_SNP [dm6]	C	T	3.739e^-4	0.709	INTRON CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1922956	2L_1922956_SNP [dm3] 2L_1922956_SNP [dm6]	T	A	3.749e^-4	0.709	INTRON CG7337
2R	12333520	2R_12333520_SNP [dm3] 2R_16446015_SNP [dm6]	T	C	3.749e^-4	0.709	UTR_5_PRIME CG15925
2L	2052681	2L_2052681_SNP [dm3] 2L_2052681_SNP [dm6]	A	T	3.751e^-4	0.709	INTERGENIC
2L	1059829	2L_1059829_SNP [dm3] 2L_1059829_SNP [dm6]	A	G	3.752e^-4	0.709	INTRON S
2R	15004894	2R_15004894_SNP [dm3] 2R_19117389_SNP [dm6]	G	A	3.752e^-4	0.709	INTRON 5-HT1A
3R	10588313	3R_10588313_SNP [dm3] 3R_14762591_SNP [dm6]	C	T	3.753e^-4	0.709	INTRON jvl
3R	21481412	3R_21481412_SNP [dm3] 3R_25655690_SNP [dm6]	A	G	3.754e^-4	0.709	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo
3L	5474372	3L_5474372_SNP [dm3] 3L_5481272_SNP [dm6]	G	C	3.757e^-4	0.709	SYNONYMOUS_CODING CG4835
2R	6142782	2R_6142782_SNP [dm3] 2R_10255277_SNP [dm6]	G	A	3.758e^-4	0.709	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
2L	6032041	2L_6032041_SNP [dm3] 2L_6032041_SNP [dm6]	A	T	3.760e^-4	0.709	INTRON CG9109
2L	13895935	2L_13895935_SNP [dm3] 2L_13895935_SNP [dm6]	T	C	3.769e^-4	0.709	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
3R	9434056	3R_9434056_SNP [dm3] 3R_13608334_SNP [dm6]	C	A	3.771e^-4	0.709	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3L	1967574	3L_1967574_SNP [dm3] 3L_1967574_SNP [dm6]	G	A	3.779e^-4	0.709	DOWNSTREAM SCOT INTRON CG1927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5825067	2L_5825067_SNP [dm3] 2L_5825067_SNP [dm6]	T	C	3.783e^-4	0.709	UTR_5_PRIME TrissinR
3L	13023880	3L_13023880_SNP [dm3] 3L_13030780_SNP [dm6]	T	C	3.786e^-4	0.709	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	3.788e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2278767	X_2278767_SNP [dm3] X_2384734_SNP [dm6]	A	G	3.796e^-4	0.709	INTRON PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Canton S(B)/DGRP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results