DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.464e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05473

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.3495	0.0418
In_2R_NS	5.0762	0.079

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2075 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14287527	3R_14287527_SNP [dm3] 3R_18461805_SNP [dm6]	T	C	8.183e^-8	0.153	INTRON fru
2L	20099842	2L_20099842_SNP [dm3] 2L_20099842_SNP [dm6]	A	G	8.968e^-7	0.812	INTRON Kua
3R	18444145	3R_18444145_SNP [dm3] 3R_22618423_SNP [dm6]	G	A	1.898e^-6	0.812	UPSTREAM mRpL45 DOWNSTREAM CG31161 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4314990	2L_4314990_SNP [dm3] 2L_4314990_SNP [dm6]	A	T	2.338e^-6	0.812	UTR_3_PRIME tutl INTRON tutl
2L	14959399	2L_14959399_SNP [dm3] 2L_14959399_SNP [dm6]	T	G	2.456e^-6	0.812	INTRON CG42313
2L	20098796	2L_20098796_SNP [dm3] 2L_20098796_SNP [dm6]	A	T	3.722e^-6	0.812	INTRON Kua	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13559050	3R_13559050_SNP [dm3] 3R_17733328_SNP [dm6]	C	T	4.860e^-6	0.812	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA transposable element FlyBase
2L	4858454	2L_4858454_INS [dm3] 2L_4858454_INS [dm6]	T	TTGTAT	4.861e^-6	0.812	INTRON pog
2L	8059650	2L_8059650_SNP [dm3] 2L_8059650_SNP [dm6]	A	C	5.156e^-6	0.812	SYNONYMOUS_CODING poe
2L	20029874	2L_20029874_SNP [dm3] 2L_20029874_SNP [dm6]	C	A	5.473e^-6	0.812	INTRON sNPF
3R	26064247	3R_26064247_SNP [dm3] 3R_30238525_SNP [dm6]	C	G	5.548e^-6	0.812	UPSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18248331	3L_18248331_INS [dm3] 3L_18255231_INS [dm6]	T	AA	5.553e^-6	0.812	INTERGENIC
2L	16114052	2L_16114052_SNP [dm3] 2L_16114052_SNP [dm6]	G	A	6.450e^-6	0.812	INTERGENIC
3R	10661151	3R_10661151_SNP [dm3] 3R_14835429_SNP [dm6]	T	A	7.790e^-6	0.812	INTRON btsz
3L	12108285	3L_12108285_SNP [dm3] 3L_12115185_SNP [dm6]	T	A	8.230e^-6	0.812	UPSTREAM l_3_j2D3 INTERGENIC
3L	3288632	3L_3288632_SNP [dm3] 3L_3288632_SNP [dm6]	G	A	8.446e^-6	0.812	INTRON CG12017
X	9741235	X_9741235_SNP [dm3] X_9847202_SNP [dm6]	A	T	9.830e^-6	0.812	INTRON CG32698
3L	13928885	3L_13928885_SNP [dm3] 3L_13935785_SNP [dm6]	C	A	9.959e^-6	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17866031	X_17866031_SNP [dm3] X_17971998_SNP [dm6]	C	T	1.008e^-5	0.812	INTRON Sh
3R	14284834	3R_14284834_DEL [dm3] 3R_18459112_DEL [dm6]	AG	A	1.064e^-5	0.812	INTRON fru	TF binding site mE1_TFBS_inv
3R	16618705	3R_16618705_SNP [dm3] 3R_20792983_SNP [dm6]	T	A	1.065e^-5	0.812	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14451804	3R_14451804_SNP [dm3] 3R_18626082_SNP [dm6]	T	G	1.106e^-5	0.812	INTRON qin
2L	20234799	2L_20234799_SNP [dm3] 2L_20234799_SNP [dm6]	G	A	1.114e^-5	0.812	INTERGENIC
3L	8552639	3L_8552639_SNP [dm3] 3L_8559539_SNP [dm6]	T	C	1.174e^-5	0.812	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11690671	3L_11690671_SNP [dm3] 3L_11697571_SNP [dm6]	T	G	1.289e^-5	0.812	SPLICE_SITE_REGION CG6053 UPSTREAM CG11652 INTRON CG6053	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16242283	3L_16242283_SNP [dm3] 3L_16249183_SNP [dm6]	G	A	1.320e^-5	0.812	DOWNSTREAM CG13055 INTERGENIC
3R	14287601	3R_14287601_SNP [dm3] 3R_18461879_SNP [dm6]	A	C	1.338e^-5	0.812	INTRON fru
3R	10662828	3R_10662828_SNP [dm3] 3R_14837106_SNP [dm6]	C	G	1.409e^-5	0.812	INTRON btsz
2R	17599829	2R_17599829_SNP [dm3] 2R_21712324_SNP [dm6]	C	G	1.423e^-5	0.812	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11601416	3R_11601416_SNP [dm3] 3R_15775694_SNP [dm6]	G	C	1.444e^-5	0.812	UPSTREAM CR45206 & 1 other INTRON CG4525
3R	14153754	3R_14153754_SNP [dm3] 3R_18328032_SNP [dm6]	G	T	1.566e^-5	0.812	INTRON CG31235
3R	14451805	3R_14451805_DEL [dm3] 3R_18626083_DEL [dm6]	TTCTACTACATATATCTT...	T	1.605e^-5	0.812	INTRON qin
3R	14284739	3R_14284739_SNP [dm3] 3R_18459017_SNP [dm6]	A	G	1.628e^-5	0.812	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9179724	3L_9179724_SNP [dm3] 3L_9186624_SNP [dm6]	G	A	1.645e^-5	0.812	INTERGENIC
2L	20029875	2L_20029875_SNP [dm3] 2L_20029875_SNP [dm6]	A	T	1.706e^-5	0.812	INTRON sNPF
2L	20104634	2L_20104634_SNP [dm3] 2L_20104634_SNP [dm6]	G	A	1.722e^-5	0.812	UPSTREAM CG13970 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8552650	3L_8552650_SNP [dm3] 3L_8559550_SNP [dm6]	A	T	1.806e^-5	0.812	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5894878	3L_5894878_SNP [dm3] 3L_5901778_SNP [dm6]	A	G	1.889e^-5	0.812	DOWNSTREAM CG32409 INTRON QC
3L	8552777	3L_8552777_SNP [dm3] 3L_8559677_SNP [dm6]	G	A	1.913e^-5	0.812	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	11290612	2L_11290612_SNP [dm3] 2L_11290612_SNP [dm6]	C	A	1.989e^-5	0.812	DOWNSTREAM CR43409 INTERGENIC
2L	7908053	2L_7908053_SNP [dm3] 2L_7908053_SNP [dm6]	T	C	1.999e^-5	0.812	INTRON Snoo
2L	12588760	2L_12588760_SNP [dm3] 2L_12588760_SNP [dm6]	T	A	2.062e^-5	0.812	INTRON nub	TF binding site mE1_TFBS_cad
3R	21816941	3R_21816941_SNP [dm3] 3R_25991219_SNP [dm6]	T	C	2.099e^-5	0.812	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2R	4919016	2R_4919016_SNP [dm3] 2R_9031511_SNP [dm6]	A	T	2.212e^-5	0.812	UPSTREAM CG8170 INTERGENIC
2L	20099188	2L_20099188_SNP [dm3] 2L_20099188_SNP [dm6]	A	T	2.238e^-5	0.812	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
3L	13928901	3L_13928901_SNP [dm3] 3L_13935801_SNP [dm6]	C	A	2.239e^-5	0.812	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16122891	3R_16122891_SNP [dm3] 3R_20297169_SNP [dm6]	C	T	2.281e^-5	0.812	NON_SYNONYMOUS_CODING cic INTRON cic
2L	20108220	2L_20108220_DEL [dm3] 2L_20108220_DEL [dm6]	CCAG	C	2.296e^-5	0.812	INTERGENIC	transposable element FlyBase
2L	18386545	2L_18386545_SNP [dm3] 2L_18386545_SNP [dm6]	T	A	2.299e^-5	0.812	UTR_3_PRIME Fas3 INTRON Fas3
3R	16337358	3R_16337358_SNP [dm3] 3R_20511636_SNP [dm6]	A	C	2.359e^-5	0.812	INTRON CG4288	TF binding site mE1_TFBS_sbb
2L	10244591	2L_10244591_SNP [dm3] 2L_10244591_SNP [dm6]	T	A	2.372e^-5	0.812	INTRON CR44995 & 1 other
3R	10414414	3R_10414414_INS [dm3] 3R_14588692_INS [dm6]	G	GGA	2.383e^-5	0.812	INTRON stumps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14026130	3R_14026130_DEL [dm3] 3R_18200408_DEL [dm6]	CAA	C	2.387e^-5	0.812	UTR_5_PRIME CG7985 UPSTREAM Ssdp INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	18248294	3L_18248294_SNP [dm3] 3L_18255194_SNP [dm6]	T	C	2.446e^-5	0.812	INTERGENIC
2L	20085024	2L_20085024_SNP [dm3] 2L_20085024_SNP [dm6]	C	T	2.470e^-5	0.812	UTR_5_PRIME fok INTRON neb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7150750	2R_7150750_SNP [dm3] 2R_11263245_SNP [dm6]	C	G	2.478e^-5	0.812	INTERGENIC
3R	5466392	3R_5466392_SNP [dm3] 3R_9640670_SNP [dm6]	C	T	2.518e^-5	0.812	UTR_5_PRIME Dh44 INTRON Dh44
3L	12108294	3L_12108294_SNP [dm3] 3L_12115194_SNP [dm6]	C	A	2.568e^-5	0.812	UPSTREAM l_3_j2D3 INTERGENIC
2L	6125692	2L_6125692_SNP [dm3] 2L_6125692_SNP [dm6]	A	G	2.592e^-5	0.812	SYNONYMOUS_CODING Arpc4 DOWNSTREAM WDR79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11418980	3L_11418980_SNP [dm3] 3L_11425880_SNP [dm6]	C	G	2.665e^-5	0.812	INTRON CG7560	TF binding site mE1_TFBS_cad
3L	12108453	3L_12108453_SNP [dm3] 3L_12115353_SNP [dm6]	G	T	2.698e^-5	0.812	UPSTREAM l_3_j2D3 INTERGENIC
2R	17859455	2R_17859455_SNP [dm3] 2R_21971950_SNP [dm6]	A	G	2.701e^-5	0.812	UPSTREAM CG34029 INTERGENIC
2L	20093349	2L_20093349_SNP [dm3] 2L_20093349_SNP [dm6]	T	C	2.768e^-5	0.812	SYNONYMOUS_CODING Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	8061568	2L_8061568_SNP [dm3] 2L_8061568_SNP [dm6]	A	G	2.800e^-5	0.812	SPLICE_SITE_DONOR poe INTRON poe	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8060331	2L_8060331_SNP [dm3] 2L_8060331_SNP [dm6]	A	G	2.889e^-5	0.812	SYNONYMOUS_CODING poe
2L	8059758	2L_8059758_SNP [dm3] 2L_8059758_SNP [dm6]	A	G	2.908e^-5	0.812	SYNONYMOUS_CODING poe
2R	1361405	2R_1361405_SNP [dm3] 2R_5473900_SNP [dm6]	G	T	2.943e^-5	0.812	INTRON CG30440	transposable element FlyBase
2R	3812216	2R_3812216_SNP [dm3] 2R_7924711_SNP [dm6]	T	A	3.001e^-5	0.812	INTRON Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	3812221	2R_3812221_SNP [dm3] 2R_7924716_SNP [dm6]	T	C	3.001e^-5	0.812	INTRON Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	15786165	2L_15786165_SNP [dm3] 2L_15786165_SNP [dm6]	T	C	3.083e^-5	0.816	SYNONYMOUS_CODING CG18109
2L	20095646	2L_20095646_SNP [dm3] 2L_20095646_SNP [dm6]	A	G	3.106e^-5	0.816	SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B	TF binding site mE1_TFBS_sens
2L	20087184	2L_20087184_SNP [dm3] 2L_20087184_SNP [dm6]	G	A	3.199e^-5	0.819	INTRON neb
3R	15645735	3R_15645735_SNP [dm3] 3R_19820013_SNP [dm6]	G	A	3.406e^-5	0.819	INTRON bnl	TF binding site mE1_TFBS_chinmo
3L	5399975	3L_5399975_SNP [dm3] 3L_5406875_SNP [dm6]	T	C	3.427e^-5	0.819	INTERGENIC
3R	26017101	3R_26017101_SNP [dm3] 3R_30191379_SNP [dm6]	C	G	3.580e^-5	0.819	UPSTREAM CG9747 INTERGENIC
3R	18289486	3R_18289486_SNP [dm3] 3R_22463764_SNP [dm6]	T	C	3.600e^-5	0.819	SYNONYMOUS_CODING AP-2mu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17034461	2R_17034461_SNP [dm3] 2R_21146956_SNP [dm6]	T	C	3.629e^-5	0.819	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14012352	3R_14012352_SNP [dm3] 3R_18186630_SNP [dm6]	G	A	3.656e^-5	0.819	SYNONYMOUS_CODING Arp5 UPSTREAM CG7208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20039976	2L_20039976_SNP [dm3] 2L_20039976_SNP [dm6]	G	A	3.744e^-5	0.819	INTRON sNPF
2L	20101000	2L_20101000_SNP [dm3] 2L_20101000_SNP [dm6]	T	C	3.754e^-5	0.819	SYNONYMOUS_CODING Kua
3L	2224444	3L_2224444_SNP [dm3] 3L_2224444_SNP [dm6]	A	G	3.826e^-5	0.819	INTERGENIC
3R	15476930	3R_15476930_SNP [dm3] 3R_19651208_SNP [dm6]	A	T	3.924e^-5	0.819	UTR_5_PRIME CG31219 DOWNSTREAM CG31220 INTRON CG31219
2L	20464375	2L_20464375_SNP [dm3] 2L_20464375_SNP [dm6]	T	A	3.932e^-5	0.819	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16908351	3L_16908351_SNP [dm3] 3L_16915251_SNP [dm6]	G	A	3.942e^-5	0.819	INTRON Lmpt
2L	8059656	2L_8059656_SNP [dm3] 2L_8059656_SNP [dm6]	T	C	3.944e^-5	0.819	SYNONYMOUS_CODING poe
2R	5016991	2R_5016991_SNP [dm3] 2R_9129486_SNP [dm6]	T	C	3.957e^-5	0.819	INTRON CG18659
3L	8553458	3L_8553458_DEL [dm3] 3L_8560358_DEL [dm6]	TCGT	C	3.959e^-5	0.819	INTRON rhea	TF binding site mE1_TFBS_Trl
3L	14849628	3L_14849628_SNP [dm3] 3L_14856528_SNP [dm6]	T	A	3.980e^-5	0.819	INTRON CG17839
X	11591320	X_11591320_SNP [dm3] X_11697287_SNP [dm6]	A	T	4.028e^-5	0.819	INTRON PhKgamma	TF binding site mE1_TFBS_sens
2L	20039917	2L_20039917_DEL [dm3] 2L_20039917_DEL [dm6]	TGAGACGGTAATC...	A	4.041e^-5	0.819	INTRON sNPF
2L	20087501	2L_20087501_SNP [dm3] 2L_20087501_SNP [dm6]	C	T	4.046e^-5	0.819	INTRON neb	TF binding site mE1_TFBS_cad
3L	1979990	3L_1979990_SNP [dm3] 3L_1979990_SNP [dm6]	T	A	4.193e^-5	0.819	INTERGENIC
2L	7458167	2L_7458167_SNP [dm3] 2L_7458167_SNP [dm6]	G	C	4.256e^-5	0.819	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
2R	4752490	2R_4752490_SNP [dm3] 2R_8864985_SNP [dm6]	G	C	4.405e^-5	0.819	INTRON RyR
3L	4392460	3L_4392460_DEL [dm3] 3L_4392460_DEL [dm6]	ATGAATGGGG	A	4.437e^-5	0.819	INTRON slow
2L	7909376	2L_7909376_SNP [dm3] 2L_7909376_SNP [dm6]	G	A	4.453e^-5	0.819	INTRON Snoo
3L	3288330	3L_3288330_SNP [dm3] 3L_3288330_SNP [dm6]	T	G	4.478e^-5	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3R	10673376	3R_10673376_SNP [dm3] 3R_14847654_SNP [dm6]	G	A	4.579e^-5	0.819	DOWNSTREAM CG3610 INTRON btsz
X	1052596	X_1052596_DEL [dm3] X_1158563_DEL [dm6]	ACACTCTCCAA...	A	4.581e^-5	0.819	DOWNSTREAM eIF4E-7 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12612490	2R_12612490_SNP [dm3] 2R_16724985_SNP [dm6]	G	A	4.597e^-5	0.819	INTRON CG30463
3L	11695090	3L_11695090_SNP [dm3] 3L_11701990_SNP [dm6]	C	G	4.624e^-5	0.819	INTRON CG11658
2L	7909478	2L_7909478_DEL [dm3] 2L_7909478_DEL [dm6]	CG	C	4.693e^-5	0.819	INTRON Snoo
X	19705274	X_19705274_DEL [dm3] X_19811241_DEL [dm6]	CGCAAC	C	4.702e^-5	0.819	INTERGENIC
2L	14810829	2L_14810829_SNP [dm3] 2L_14810829_SNP [dm6]	G	T	4.726e^-5	0.819	INTRON CG33309
3R	11462737	3R_11462737_SNP [dm3] 3R_15637015_SNP [dm6]	T	C	4.772e^-5	0.819	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3R	18443998	3R_18443998_SNP [dm3] 3R_22618276_SNP [dm6]	A	T	4.888e^-5	0.819	UTR_3_PRIME CG31161 UPSTREAM mRpL45	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15491318	X_15491318_SNP [dm3] X_15597285_SNP [dm6]	G	T	4.944e^-5	0.819	INTERGENIC
X	8398241	X_8398241_SNP [dm3] X_8504208_SNP [dm6]	A	T	4.988e^-5	0.819	INTRON CG33181
3R	27065007	3R_27065007_SNP [dm3] 3R_31239285_SNP [dm6]	T	C	5.059e^-5	0.819	INTRON qless
3L	8525269	3L_8525269_DEL [dm3] 3L_8532169_DEL [dm6]	TGTA	T	5.064e^-5	0.819	CODON_DELETION foi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19896662	2L_19896662_SNP [dm3] 2L_19896662_SNP [dm6]	C	A	5.066e^-5	0.819	INTRON sick
3R	8518674	3R_8518674_SNP [dm3] 3R_12692952_SNP [dm6]	G	A	5.108e^-5	0.819	SPLICE_SITE_REGION Arp1 UPSTREAM CG31347 INTRON Arp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4636500	3L_4636500_SNP [dm3] 3L_4636500_SNP [dm6]	C	A	5.110e^-5	0.819	DOWNSTREAM axo INTRON axo
3R	10661299	3R_10661299_SNP [dm3] 3R_14835577_SNP [dm6]	A	C	5.136e^-5	0.819	INTRON btsz
2R	3812208	2R_3812208_DEL [dm3] 2R_7924703_DEL [dm6]	AA	A	5.153e^-5	0.819	INTRON Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	15345138	3R_15345138_SNP [dm3] 3R_19519416_SNP [dm6]	C	T	5.226e^-5	0.819	INTRON Dys
2L	20087116	2L_20087116_SNP [dm3] 2L_20087116_SNP [dm6]	T	C	5.246e^-5	0.819	INTRON neb
2L	20089501	2L_20089501_SNP [dm3] 2L_20089501_SNP [dm6]	A	C	5.403e^-5	0.819	SYNONYMOUS_CODING neb DOWNSTREAM CG10747	TF binding site mE1_TFBS_cad
2L	20087360	2L_20087360_INS [dm3] 2L_20087360_INS [dm6]	A	AC	5.430e^-5	0.819	INTRON neb
2R	9790014	2R_9790014_SNP [dm3] 2R_13902509_SNP [dm6]	G	A	5.436e^-5	0.819	INTRON shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	13559090	3R_13559090_SNP [dm3] 3R_17733368_SNP [dm6]	A	T	5.584e^-5	0.819	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	855884	3L_855884_SNP [dm3] 3L_855884_SNP [dm6]	A	T	5.604e^-5	0.819	INTRON dpr20
3R	21816824	3R_21816824_SNP [dm3] 3R_25991102_SNP [dm6]	A	G	5.726e^-5	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3L	6662974	3L_6662974_SNP [dm3] 3L_6669874_SNP [dm6]	T	C	5.730e^-5	0.819	INTERGENIC
X	15094311	X_15094311_SNP [dm3] X_15200278_SNP [dm6]	G	A	5.881e^-5	0.819	INTERGENIC
3R	15327309	3R_15327309_SNP [dm3] 3R_19501587_SNP [dm6]	C	A	5.882e^-5	0.819	INTRON Dys	TF binding site mE1_TFBS_HSA
3L	18248299	3L_18248299_SNP [dm3] 3L_18255199_SNP [dm6]	G	T	5.885e^-5	0.819	INTERGENIC
2R	18355444	2R_18355444_SNP [dm3] 2R_22467939_SNP [dm6]	C	T	5.889e^-5	0.819	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	7736656	2R_7736656_SNP [dm3] 2R_11849151_SNP [dm6]	C	T	5.965e^-5	0.819	SYNONYMOUS_CODING Sln	TF binding site mE1_TFBS_chinmo
3L	5665830	3L_5665830_SNP [dm3] 3L_5672730_SNP [dm6]	A	C	5.992e^-5	0.819	UTR_5_PRIME sif INTRON sif
3R	21815582	3R_21815582_SNP [dm3] 3R_25989860_SNP [dm6]	G	A	6.017e^-5	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3R	13559172	3R_13559172_SNP [dm3] 3R_17733450_SNP [dm6]	A	C	6.159e^-5	0.819	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	8719306	X_8719306_DEL [dm3] X_8825273_DEL [dm6]	AA	A	6.198e^-5	0.819	INTERGENIC
X	14722917	X_14722917_SNP [dm3] X_14828884_SNP [dm6]	G	A	6.222e^-5	0.819	UTR_3_PRIME CG14408 INTRON CG14408	TF binding site BDTNP1_TFBS_dl
3R	10316214	3R_10316214_SNP [dm3] 3R_14490492_SNP [dm6]	A	C	6.279e^-5	0.819	INTERGENIC
2R	7670667	2R_7670667_SNP [dm3] 2R_11783162_SNP [dm6]	T	A	6.346e^-5	0.819	INTRON ths
2R	13531151	2R_13531151_SNP [dm3] 2R_17643646_SNP [dm6]	C	T	6.404e^-5	0.819	INTERGENIC
3L	7958097	3L_7958097_SNP [dm3] 3L_7964997_SNP [dm6]	T	A	6.511e^-5	0.819	INTERGENIC
2L	20063222	2L_20063222_SNP [dm3] 2L_20063222_SNP [dm6]	G	T	6.572e^-5	0.819	UTR_3_PRIME lok INTRON lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	855831	3L_855831_SNP [dm3] 3L_855831_SNP [dm6]	G	T	6.578e^-5	0.819	INTRON dpr20
2L	14957449	2L_14957449_INS [dm3] 2L_14957449_INS [dm6]	C	CGTCTGTGGACCC...	6.698e^-5	0.819	INTRON CG42313
2L	20039508	2L_20039508_SNP [dm3] 2L_20039508_SNP [dm6]	G	C	6.716e^-5	0.819	INTRON sNPF
3R	15062454	3R_15062454_SNP [dm3] 3R_19236732_SNP [dm6]	G	C	6.720e^-5	0.819	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7909357	2L_7909357_SNP [dm3] 2L_7909357_SNP [dm6]	A	G	6.726e^-5	0.819	INTRON Snoo
3L	13928946	3L_13928946_SNP [dm3] 3L_13935846_SNP [dm6]	C	A	6.756e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10547307	2L_10547307_INS [dm3] 2L_10547307_INS [dm6]	T	TG	6.905e^-5	0.819	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7105632	3L_7105632_SNP [dm3] 3L_7112532_SNP [dm6]	C	A	6.918e^-5	0.819	INTRON form3
3R	21816482	3R_21816482_SNP [dm3] 3R_25990760_SNP [dm6]	G	A	6.954e^-5	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2L	7891101	2L_7891101_SNP [dm3] 2L_7891101_SNP [dm6]	C	T	6.986e^-5	0.819	UPSTREAM Spn28Db DOWNSTREAM Snoo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	27058896	3R_27058896_SNP [dm3] 3R_31233174_SNP [dm6]	T	A	7.100e^-5	0.819	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20039175	2L_20039175_SNP [dm3] 2L_20039175_SNP [dm6]	T	G	7.147e^-5	0.819	INTRON sNPF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10295660	3R_10295660_SNP [dm3] 3R_14469938_SNP [dm6]	C	T	7.158e^-5	0.819	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21815066	3R_21815066_SNP [dm3] 3R_25989344_SNP [dm6]	G	A	7.191e^-5	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2L	10715573	2L_10715573_SNP [dm3] 2L_10715573_SNP [dm6]	T	A	7.223e^-5	0.819	INTERGENIC
3R	15062370	3R_15062370_SNP [dm3] 3R_19236648_SNP [dm6]	T	C	7.228e^-5	0.819	INTRON unc79	TF binding site mE1_TFBS_chinmo
3R	14182690	3R_14182690_SNP [dm3] 3R_18356968_SNP [dm6]	G	A	7.239e^-5	0.819	INTRON CG15803
2L	16114174	2L_16114174_SNP [dm3] 2L_16114174_SNP [dm6]	A	T	7.256e^-5	0.819	INTERGENIC
2L	20095898	2L_20095898_SNP [dm3] 2L_20095898_SNP [dm6]	A	G	7.297e^-5	0.819	SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B
X	10475756	X_10475756_SNP [dm3] X_10581723_SNP [dm6]	T	C	7.300e^-5	0.819	INTRON spri
3L	15947640	3L_15947640_SNP [dm3] 3L_15954540_SNP [dm6]	T	C	7.334e^-5	0.819	NON_SYNONYMOUS_CODING Pka-C3 UPSTREAM GXIVsPLA2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9799679	2R_9799679_SNP [dm3] 2R_13912174_SNP [dm6]	T	G	7.438e^-5	0.819	INTRON shot	TF binding site BDTNP1_TFBS_twi
3R	10243797	3R_10243797_SNP [dm3] 3R_14418075_SNP [dm6]	A	G	7.472e^-5	0.819	UPSTREAM natalisin INTRON cv-c
3L	18296551	3L_18296551_SNP [dm3] 3L_18303451_SNP [dm6]	C	A	7.493e^-5	0.819	UTR_3_PRIME grim	TF binding site BDTNP1_TFBS_da
3R	14012473	3R_14012473_SNP [dm3] 3R_18186751_SNP [dm6]	C	T	7.496e^-5	0.819	SYNONYMOUS_CODING Arp5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9043447	2R_9043447_SNP [dm3] 2R_13155942_SNP [dm6]	A	T	7.613e^-5	0.819	INTRON TppII
2L	14810824	2L_14810824_SNP [dm3] 2L_14810824_SNP [dm6]	A	T	7.651e^-5	0.819	INTRON CG33309
2L	7856493	2L_7856493_SNP [dm3] 2L_7856493_SNP [dm6]	G	A	7.658e^-5	0.819	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15257879	3R_15257879_SNP [dm3] 3R_19432157_SNP [dm6]	T	C	7.698e^-5	0.819	INTRON CG31221
2L	7909349	2L_7909349_SNP [dm3] 2L_7909349_SNP [dm6]	T	C	7.716e^-5	0.819	INTRON Snoo
3L	2024823	3L_2024823_SNP [dm3] 3L_2024823_SNP [dm6]	C	T	7.775e^-5	0.819	INTERGENIC
3R	22438777	3R_22438777_SNP [dm3] 3R_26613055_SNP [dm6]	G	A	7.785e^-5	0.819	INTERGENIC
3R	8021534	3R_8021534_SNP [dm3] 3R_12195812_SNP [dm6]	T	C	7.807e^-5	0.819	UPSTREAM CG4810 DOWNSTREAM CG43450 INTERGENIC
2L	14810759	2L_14810759_SNP [dm3] 2L_14810759_SNP [dm6]	T	A	7.815e^-5	0.819	UPSTREAM CG33309 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21816527	3R_21816527_SNP [dm3] 3R_25990805_SNP [dm6]	A	T	7.894e^-5	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2R	7736683	2R_7736683_SNP [dm3] 2R_11849178_SNP [dm6]	C	G	7.946e^-5	0.819	SYNONYMOUS_CODING Sln	TF binding site mE1_TFBS_chinmo
2L	11698737	2L_11698737_SNP [dm3] 2L_11698737_SNP [dm6]	T	G	7.981e^-5	0.819	INTERGENIC
3R	18289567	3R_18289567_SNP [dm3] 3R_22463845_SNP [dm6]	A	G	8.058e^-5	0.819	SYNONYMOUS_CODING AP-2mu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18288547	3R_18288547_SNP [dm3] 3R_22462825_SNP [dm6]	T	C	8.118e^-5	0.819	UPSTREAM Rpn7 INTRON AP-2mu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	20886760	3R_20886760_SNP [dm3] 3R_25061038_SNP [dm6]	G	A	8.124e^-5	0.819	SYNONYMOUS_CODING Unc-13-4B	TF binding site mE1_TFBS_cad
2R	7661574	2R_7661574_SNP [dm3] 2R_11774069_SNP [dm6]	C	G	8.203e^-5	0.819	INTRON ths
3R	13559188	3R_13559188_SNP [dm3] 3R_17733466_SNP [dm6]	A	G	8.208e^-5	0.819	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3811812	2R_3811812_SNP [dm3] 2R_7924307_SNP [dm6]	T	C	8.216e^-5	0.819	SYNONYMOUS_CODING Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20087074	2L_20087074_SNP [dm3] 2L_20087074_SNP [dm6]	C	A	8.256e^-5	0.819	INTRON neb
2R	11789955	2R_11789955_SNP [dm3] 2R_15902450_SNP [dm6]	G	A	8.259e^-5	0.819	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	14453067	3R_14453067_SNP [dm3] 3R_18627345_SNP [dm6]	A	T	8.348e^-5	0.819	INTRON qin
2L	20234776	2L_20234776_SNP [dm3] 2L_20234776_SNP [dm6]	A	C	8.489e^-5	0.819	INTERGENIC
3L	5665909	3L_5665909_SNP [dm3] 3L_5672809_SNP [dm6]	C	A	8.540e^-5	0.819	UTR_5_PRIME sif INTRON sif
2R	10643962	2R_10643962_SNP [dm3] 2R_14756457_SNP [dm6]	C	T	8.590e^-5	0.819	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16838963	X_16838963_SNP [dm3] X_16944930_SNP [dm6]	A	T	8.644e^-5	0.819	INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20063403	2L_20063403_SNP [dm3] 2L_20063403_SNP [dm6]	T	A	8.871e^-5	0.819	SYNONYMOUS_CODING lok UTR_3_PRIME lok DOWNSTREAM vls	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12108484	3L_12108484_SNP [dm3] 3L_12115384_SNP [dm6]	G	A	8.877e^-5	0.819	UPSTREAM l_3_j2D3 INTERGENIC
2L	14810833	2L_14810833_SNP [dm3] 2L_14810833_SNP [dm6]	A	T	8.919e^-5	0.819	INTRON CG33309
3L	1394652	3L_1394652_SNP [dm3] 3L_1394652_SNP [dm6]	G	A	8.922e^-5	0.819	INTRON Ptp61F
X	11066976	X_11066976_SNP [dm3] X_11172943_SNP [dm6]	T	A	8.950e^-5	0.819	INTERGENIC
3L	8559324	3L_8559324_SNP [dm3] 3L_8566224_SNP [dm6]	C	A	8.966e^-5	0.819	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16643279	3R_16643279_SNP [dm3] 3R_20817557_SNP [dm6]	C	T	9.032e^-5	0.819	SYNONYMOUS_CODING CG17270
X	15552675	X_15552675_SNP [dm3] X_15658642_SNP [dm6]	G	A	9.063e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	13559301	3R_13559301_INS [dm3] 3R_17733579_INS [dm6]	C	CC	9.071e^-5	0.819	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	17217189	X_17217189_SNP [dm3] X_17323156_SNP [dm6]	G	A	9.239e^-5	0.819	SYNONYMOUS_CODING B-H2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11558504	3R_11558504_SNP [dm3] 3R_15732782_SNP [dm6]	T	C	9.337e^-5	0.819	DOWNSTREAM CG34274 INTERGENIC
3R	8040919	3R_8040919_SNP [dm3] 3R_12215197_SNP [dm6]	T	C	9.361e^-5	0.819	UTR_3_PRIME CG4848 DOWNSTREAM CG4848 INTRON CG14742
3R	10661059	3R_10661059_SNP [dm3] 3R_14835337_SNP [dm6]	G	T	9.395e^-5	0.819	INTRON btsz
2R	14705644	2R_14705644_INS [dm3] 2R_18818139_INS [dm6]	T	TT	9.397e^-5	0.819	INTERGENIC
2L	14243932	2L_14243932_DEL [dm3] 2L_14243932_DEL [dm6]	GCCGTGAG	G	9.488e^-5	0.819	INTERGENIC
2L	20108241	2L_20108241_SNP [dm3] 2L_20108241_SNP [dm6]	T	A	9.538e^-5	0.819	INTERGENIC	transposable element FlyBase
2L	13820357	2L_13820357_SNP [dm3] 2L_13820357_SNP [dm6]	C	T	9.716e^-5	0.819	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	17233567	2L_17233567_SNP [dm3] 2L_17233567_SNP [dm6]	G	A	9.722e^-5	0.819	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20830598	3R_20830598_SNP [dm3] 3R_25004876_SNP [dm6]	G	T	9.755e^-5	0.819	INTRON tnc
X	10475614	X_10475614_DEL [dm3] X_10581581_DEL [dm6]	AA	A	9.804e^-5	0.819	INTRON spri
2R	1361432	2R_1361432_DEL [dm3] 2R_5473927_DEL [dm6]	TCAGAGTGGGCGT...	T	9.804e^-5	0.819	INTRON CG30440	transposable element FlyBase
2L	11698629	2L_11698629_SNP [dm3] 2L_11698629_SNP [dm6]	C	G	9.893e^-5	0.819	INTERGENIC
2L	7909415	2L_7909415_SNP [dm3] 2L_7909415_SNP [dm6]	C	T	9.944e^-5	0.819	INTRON Snoo
3L	12108341	3L_12108341_SNP [dm3] 3L_12115241_SNP [dm6]	G	A	1.004e^-4	0.819	UPSTREAM l_3_j2D3 INTERGENIC
2L	20090719	2L_20090719_SNP [dm3] 2L_20090719_SNP [dm6]	A	G	1.004e^-4	0.819	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4395157	3L_4395157_SNP [dm3] 3L_4395157_SNP [dm6]	G	A	1.007e^-4	0.819	INTRON slow
2L	4740522	2L_4740522_SNP [dm3] 2L_4740522_SNP [dm6]	C	G	1.008e^-4	0.819	INTRON CG15630
3R	10243482	3R_10243482_DEL [dm3] 3R_14417760_DEL [dm6]	AA	A	1.009e^-4	0.819	UPSTREAM natalisin INTRON cv-c
3L	12108459	3L_12108459_SNP [dm3] 3L_12115359_SNP [dm6]	G	T	1.022e^-4	0.819	UPSTREAM l_3_j2D3 INTERGENIC
3L	12108485	3L_12108485_SNP [dm3] 3L_12115385_SNP [dm6]	G	A	1.022e^-4	0.819	UPSTREAM l_3_j2D3 INTERGENIC
2L	11290588	2L_11290588_SNP [dm3] 2L_11290588_SNP [dm6]	T	C	1.023e^-4	0.819	DOWNSTREAM CR43409 INTERGENIC
3L	3288365	3L_3288365_SNP [dm3] 3L_3288365_SNP [dm6]	T	A	1.024e^-4	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3R	17932022	3R_17932022_SNP [dm3] 3R_22106300_SNP [dm6]	A	G	1.025e^-4	0.819	DOWNSTREAM CG13407 INTRON CG5778
3L	1894608	3L_1894608_SNP [dm3] 3L_1894608_SNP [dm6]	T	C	1.039e^-4	0.819	SYNONYMOUS_CODING CG1887
3L	11419005	3L_11419005_SNP [dm3] 3L_11425905_SNP [dm6]	T	A	1.043e^-4	0.819	INTRON CG7560	TF binding site mE1_TFBS_cad
X	2467219	X_2467219_SNP [dm3] X_2573186_SNP [dm6]	A	C	1.044e^-4	0.819	SYNONYMOUS_CODING Pdfr
2R	11789996	2R_11789996_DEL [dm3] 2R_15902491_DEL [dm6]	AAGA	A	1.052e^-4	0.819	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	1979972	3L_1979972_SNP [dm3] 3L_1979972_SNP [dm6]	A	G	1.055e^-4	0.819	INTERGENIC
3L	12082742	3L_12082742_SNP [dm3] 3L_12089642_SNP [dm6]	T	C	1.056e^-4	0.819	DOWNSTREAM CG17154 INTERGENIC
2R	7986830	2R_7986830_SNP [dm3] 2R_12099325_SNP [dm6]	A	G	1.073e^-4	0.819	INTRON jeb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10186959	3R_10186959_SNP [dm3] 3R_14361237_SNP [dm6]	T	C	1.078e^-4	0.819	UTR_5_PRIME CG31320 INTRON NK7.1
X	19080138	X_19080138_SNP [dm3] X_19186105_SNP [dm6]	G	C	1.090e^-4	0.819	SYNONYMOUS_CODING CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20039863	2L_20039863_SNP [dm3] 2L_20039863_SNP [dm6]	G	A	1.104e^-4	0.819	INTRON sNPF
X	16807836	X_16807836_SNP [dm3] X_16913803_SNP [dm6]	A	C	1.111e^-4	0.819	UTR_5_PRIME CG4928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3288369	3L_3288369_SNP [dm3] 3L_3288369_SNP [dm6]	C	T	1.115e^-4	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3R	21815846	3R_21815846_SNP [dm3] 3R_25990124_SNP [dm6]	T	C	1.119e^-4	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2L	20087134	2L_20087134_SNP [dm3] 2L_20087134_SNP [dm6]	T	C	1.120e^-4	0.819	INTRON neb
3L	3288343	3L_3288343_SNP [dm3] 3L_3288343_SNP [dm6]	A	T	1.123e^-4	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3L	3288347	3L_3288347_DEL [dm3] 3L_3288347_DEL [dm6]	ATG	A	1.123e^-4	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3L	16902273	3L_16902273_SNP [dm3] 3L_16909173_SNP [dm6]	G	A	1.129e^-4	0.819	INTRON Lmpt
2R	8335552	2R_8335552_SNP [dm3] 2R_12448047_SNP [dm6]	T	C	1.134e^-4	0.819	SYNONYMOUS_CODING Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	1.144e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12082745	3L_12082745_INS [dm3] 3L_12089645_INS [dm6]	C	CT	1.149e^-4	0.819	DOWNSTREAM CG17154 INTERGENIC
2L	16365460	2L_16365460_SNP [dm3] 2L_16365460_SNP [dm6]	A	G	1.157e^-4	0.819	UPSTREAM jhamt INTERGENIC
2R	10180302	2R_10180302_DEL [dm3] 2R_14292797_DEL [dm6]	CTTTCTTTAGTTCCGATTTC...	C	1.158e^-4	0.819	UTR_3_PRIME Ih INTRON Ih
3L	21935182	3L_21935182_SNP [dm3] 3L_21942082_SNP [dm6]	C	G	1.160e^-4	0.819	UPSTREAM CG14562 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	10715581	2L_10715581_SNP [dm3] 2L_10715581_SNP [dm6]	A	T	1.160e^-4	0.819	INTERGENIC
3R	15327287	3R_15327287_INS [dm3] 3R_19501565_INS [dm6]	C	CC	1.171e^-4	0.819	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20036791	2L_20036791_SNP [dm3] 2L_20036791_SNP [dm6]	A	C	1.172e^-4	0.819	INTRON sNPF
3R	15435094	3R_15435094_SNP [dm3] 3R_19609372_SNP [dm6]	A	G	1.178e^-4	0.819	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
3R	13562168	3R_13562168_SNP [dm3] 3R_17736446_SNP [dm6]	A	G	1.180e^-4	0.819	UPSTREAM TyrRII INTERGENIC
3L	14114027	3L_14114027_SNP [dm3] 3L_14120927_SNP [dm6]	A	C	1.183e^-4	0.819	INTRON Sox21b
2R	11790092	2R_11790092_SNP [dm3] 2R_15902587_SNP [dm6]	G	T	1.199e^-4	0.819	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	4416670	3L_4416670_SNP [dm3] 3L_4416670_SNP [dm6]	C	A	1.204e^-4	0.819	INTRON DOR
X	8892332	X_8892332_SNP [dm3] X_8998299_SNP [dm6]	A	T	1.205e^-4	0.819	INTRON rdgA & 1 other
2R	15435801	2R_15435801_SNP [dm3] 2R_19548296_SNP [dm6]	G	T	1.207e^-4	0.819	INTRON sm
3R	10186999	3R_10186999_MNP [dm3] 3R_14361277_MNP [dm6]	TTG	GCT	1.211e^-4	0.819	UTR_5_PRIME CG31320 INTRON NK7.1
3L	16005005	3L_16005005_SNP [dm3] 3L_16011905_SNP [dm6]	A	G	1.216e^-4	0.819	UPSTREAM mib1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	13660073	3R_13660073_SNP [dm3] 3R_17834351_SNP [dm6]	A	G	1.218e^-4	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7909423	2L_7909423_DEL [dm3] 2L_7909423_DEL [dm6]	ACATA	A	1.238e^-4	0.819	INTRON Snoo
3R	13660118	3R_13660118_SNP [dm3] 3R_17834396_SNP [dm6]	G	C	1.255e^-4	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12107410	3L_12107410_SNP [dm3] 3L_12114310_SNP [dm6]	T	G	1.255e^-4	0.819	INTERGENIC
3R	21366190	3R_21366190_SNP [dm3] 3R_25540468_SNP [dm6]	G	A	1.256e^-4	0.819	INTRON msi
3R	21366191	3R_21366191_SNP [dm3] 3R_25540469_SNP [dm6]	A	T	1.256e^-4	0.819	INTRON msi
3R	16723957	3R_16723957_SNP [dm3] 3R_20898235_SNP [dm6]	T	A	1.260e^-4	0.819	UPSTREAM CG10830 INTERGENIC
3R	22871553	3R_22871553_SNP [dm3] 3R_27045831_SNP [dm6]	C	A	1.262e^-4	0.819	INTRON RYa-R
3L	10985489	3L_10985489_INS [dm3] 3L_10992389_INS [dm6]	G	GT	1.263e^-4	0.819	INTRON klu
X	1047851	X_1047851_INS [dm3] X_1153818_INS [dm6]	A	AA	1.269e^-4	0.819	INTERGENIC
3L	10959828	3L_10959828_SNP [dm3] 3L_10966728_SNP [dm6]	G	A	1.271e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	4394663	3L_4394663_SNP [dm3] 3L_4394663_SNP [dm6]	G	A	1.272e^-4	0.819	INTRON slow	TF binding site BDTNP1_TFBS_prd
2L	928422	2L_928422_SNP [dm3] 2L_928422_SNP [dm6]	G	C	1.275e^-4	0.819	INTRON CG4341
3L	7348120	3L_7348120_SNP [dm3] 3L_7355020_SNP [dm6]	C	A	1.280e^-4	0.819	SYNONYMOUS_CODING CTCF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16259116	3R_16259116_SNP [dm3] 3R_20433394_SNP [dm6]	A	G	1.289e^-4	0.819	INTRON Gfrl
2L	9839951	2L_9839951_SNP [dm3] 2L_9839951_SNP [dm6]	C	T	1.294e^-4	0.819	INTRON nAChRalpha6
2L	3600589	2L_3600589_SNP [dm3] 2L_3600589_SNP [dm6]	G	C	1.295e^-4	0.819	INTERGENIC
2L	20066784	2L_20066784_SNP [dm3] 2L_20066784_SNP [dm6]	G	A	1.295e^-4	0.819	SYNONYMOUS_CODING bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8893294	X_8893294_SNP [dm3] X_8999261_SNP [dm6]	G	T	1.296e^-4	0.819	INTRON rdgA & 1 other
3L	18910170	3L_18910170_SNP [dm3] 3L_18917070_SNP [dm6]	A	G	1.297e^-4	0.819	UPSTREAM CG6839 INTERGENIC
2R	17940849	2R_17940849_SNP [dm3] 2R_22053344_SNP [dm6]	G	A	1.297e^-4	0.819	INTERGENIC
2L	7909463	2L_7909463_SNP [dm3] 2L_7909463_SNP [dm6]	C	A	1.309e^-4	0.819	INTRON Snoo
3L	12894101	3L_12894101_SNP [dm3] 3L_12901001_SNP [dm6]	T	A	1.316e^-4	0.819	DOWNSTREAM CG12520 INTERGENIC
2L	14810836	2L_14810836_SNP [dm3] 2L_14810836_SNP [dm6]	G	A	1.319e^-4	0.819	INTRON CG33309
3R	16904759	3R_16904759_SNP [dm3] 3R_21079037_SNP [dm6]	C	T	1.319e^-4	0.819	INTRON HHEX
2L	4830819	2L_4830819_SNP [dm3] 2L_4830819_SNP [dm6]	T	A	1.332e^-4	0.819	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	5858412	2L_5858412_SNP [dm3] 2L_5858412_SNP [dm6]	A	G	1.336e^-4	0.819	INTERGENIC
3R	21816026	3R_21816026_SNP [dm3] 3R_25990304_SNP [dm6]	T	C	1.344e^-4	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1604429	2R_1604429_DEL [dm3] 2R_5716924_DEL [dm6]	AGGCTATCAATAATCG...	A	1.346e^-4	0.819	INTRON ap
3R	18287333	3R_18287333_SNP [dm3] 3R_22461611_SNP [dm6]	A	G	1.348e^-4	0.819	SYNONYMOUS_CODING Rpn7 UPSTREAM AP-2mu DOWNSTREAM CG34376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	1326390	2R_1326390_SNP [dm3] 2R_5438885_SNP [dm6]	T	C	1.352e^-4	0.819	INTRON laccase2	transposable element FlyBase
2L	20105716	2L_20105716_SNP [dm3] 2L_20105716_SNP [dm6]	A	T	1.352e^-4	0.819	INTERGENIC
X	8940109	X_8940109_SNP [dm3] X_9046076_SNP [dm6]	A	G	1.353e^-4	0.819	INTRON CR43836 & 1 other
2R	8949246	2R_8949246_SNP [dm3] 2R_13061741_SNP [dm6]	C	A	1.362e^-4	0.819	INTRON Drl-2
2R	5309484	2R_5309484_SNP [dm3] 2R_9421979_SNP [dm6]	A	C	1.364e^-4	0.819	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17658439	3R_17658439_SNP [dm3] 3R_21832717_SNP [dm6]	A	G	1.367e^-4	0.819	NON_SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5673521	2L_5673521_SNP [dm3] 2L_5673521_SNP [dm6]	G	A	1.375e^-4	0.819	INTERGENIC
X	6786731	X_6786731_DEL [dm3] X_6892698_DEL [dm6]	ACGAGTA	A	1.389e^-4	0.819	INTERGENIC
3R	10079314	3R_10079314_SNP [dm3] 3R_14253592_SNP [dm6]	G	A	1.397e^-4	0.819	INTRON Aats-met
3R	27063714	3R_27063714_SNP [dm3] 3R_31237992_SNP [dm6]	A	G	1.403e^-4	0.819	SYNONYMOUS_CODING qless
3R	5466413	3R_5466413_SNP [dm3] 3R_9640691_SNP [dm6]	A	T	1.406e^-4	0.819	UTR_5_PRIME Dh44 INTRON Dh44
2L	6018286	2L_6018286_SNP [dm3] 2L_6018286_SNP [dm6]	A	C	1.426e^-4	0.819	INTRON H2.0
3R	15495634	3R_15495634_SNP [dm3] 3R_19669912_SNP [dm6]	A	G	1.428e^-4	0.819	SYNONYMOUS_CODING CG7432
3R	21366196	3R_21366196_SNP [dm3] 3R_25540474_SNP [dm6]	A	T	1.438e^-4	0.819	INTRON msi
2R	4684247	2R_4684247_SNP [dm3] 2R_8796742_SNP [dm6]	T	G	1.442e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	17859421	2R_17859421_SNP [dm3] 2R_21971916_SNP [dm6]	G	T	1.444e^-4	0.819	UPSTREAM CG34029 INTERGENIC
2R	5309481	2R_5309481_SNP [dm3] 2R_9421976_SNP [dm6]	G	C	1.450e^-4	0.819	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8428631	2L_8428631_SNP [dm3] 2L_8428631_SNP [dm6]	G	C	1.450e^-4	0.819	NON_SYNONYMOUS_CODING Akap200 INTRON Akap200	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	10660327	3R_10660327_SNP [dm3] 3R_14834605_SNP [dm6]	G	C	1.470e^-4	0.819	INTRON btsz
3R	25995746	3R_25995746_SNP [dm3] 3R_30170024_SNP [dm6]	T	C	1.472e^-4	0.819	SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11342209	2L_11342209_SNP [dm3] 2L_11342209_SNP [dm6]	A	C	1.477e^-4	0.819	DOWNSTREAM CG14926 INTERGENIC
2L	20029008	2L_20029008_SNP [dm3] 2L_20029008_SNP [dm6]	C	T	1.487e^-4	0.819	INTRON sNPF
3R	5405278	3R_5405278_SNP [dm3] 3R_9579556_SNP [dm6]	G	A	1.487e^-4	0.819	SYNONYMOUS_CODING CG8273	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4792295	2R_4792295_SNP [dm3] 2R_8904790_SNP [dm6]	C	T	1.490e^-4	0.819	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258	TF binding site mE1_TFBS_cad
3R	15321891	3R_15321891_SNP [dm3] 3R_19496169_SNP [dm6]	T	A	1.490e^-4	0.819	INTRON Dys
3R	17018806	3R_17018806_SNP [dm3] 3R_21193084_SNP [dm6]	C	T	1.490e^-4	0.819	INTRON SNF4Agamma
3R	17018815	3R_17018815_SNP [dm3] 3R_21193093_SNP [dm6]	T	C	1.490e^-4	0.819	INTRON SNF4Agamma
2L	14992817	2L_14992817_INS [dm3] 2L_14992817_INS [dm6]	T	TGAGTAT	1.493e^-4	0.819	INTRON mol
2R	11789991	2R_11789991_SNP [dm3] 2R_15902486_SNP [dm6]	A	C	1.496e^-4	0.819	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	14451418	3R_14451418_SNP [dm3] 3R_18625696_SNP [dm6]	C	G	1.508e^-4	0.819	INTRON qin
2R	4752630	2R_4752630_SNP [dm3] 2R_8865125_SNP [dm6]	A	C	1.510e^-4	0.819	INTRON RyR
3R	11557616	3R_11557616_SNP [dm3] 3R_15731894_SNP [dm6]	T	C	1.514e^-4	0.819	SYNONYMOUS_CODING CG34274
3L	3802347	3L_3802347_SNP [dm3] 3L_3802347_SNP [dm6]	G	T	1.521e^-4	0.819	INTRON CG32264
3R	21816455	3R_21816455_SNP [dm3] 3R_25990733_SNP [dm6]	T	C	1.530e^-4	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2R	13620119	2R_13620119_SNP [dm3] 2R_17732614_SNP [dm6]	A	T	1.530e^-4	0.819	UPSTREAM CG34195 INTRON CG4984 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18366355	3R_18366355_DEL [dm3] 3R_22540633_DEL [dm6]	CC	C	1.535e^-4	0.819	UPSTREAM CG5326 INTRON CR45646
3R	18366361	3R_18366361_SNP [dm3] 3R_22540639_SNP [dm6]	G	T	1.535e^-4	0.819	UPSTREAM CG5326 INTRON CR45646
2L	17233560	2L_17233560_SNP [dm3] 2L_17233560_SNP [dm6]	C	T	1.542e^-4	0.819	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	22611983	3R_22611983_SNP [dm3] 3R_26786261_SNP [dm6]	A	G	1.545e^-4	0.819	DOWNSTREAM CG42790 INTERGENIC
2L	12569429	2L_12569429_SNP [dm3] 2L_12569429_SNP [dm6]	C	A	1.558e^-4	0.819	INTERGENIC
3R	14451799	3R_14451799_SNP [dm3] 3R_18626077_SNP [dm6]	T	A	1.562e^-4	0.819	INTRON qin
X	15552671	X_15552671_SNP [dm3] X_15658638_SNP [dm6]	G	A	1.568e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2R	10418018	2R_10418018_SNP [dm3] 2R_14530513_SNP [dm6]	A	T	1.580e^-4	0.819	INTRON ttv
3L	4393073	3L_4393073_SNP [dm3] 3L_4393073_SNP [dm6]	A	G	1.585e^-4	0.819	INTRON slow
2L	16365397	2L_16365397_SNP [dm3] 2L_16365397_SNP [dm6]	T	C	1.589e^-4	0.819	UPSTREAM jhamt INTERGENIC
3L	6656772	3L_6656772_SNP [dm3] 3L_6663672_SNP [dm6]	G	C	1.590e^-4	0.819	DOWNSTREAM eIF4E-4 INTERGENIC
3L	6656786	3L_6656786_SNP [dm3] 3L_6663686_SNP [dm6]	A	C	1.590e^-4	0.819	DOWNSTREAM eIF4E-4 INTERGENIC
3L	6657245	3L_6657245_DEL [dm3] 3L_6664145_DEL [dm6]	CATAAAGGGTCCAACTAGC...	C	1.591e^-4	0.819	DOWNSTREAM eIF4E-4 INTERGENIC
2L	7065003	2L_7065003_SNP [dm3] 2L_7065003_SNP [dm6]	A	T	1.596e^-4	0.819	DOWNSTREAM Sem1 INTRON Nuf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	21418851	3L_21418851_SNP [dm3] 3L_21425751_SNP [dm6]	G	A	1.599e^-4	0.819	INTRON barc
3L	24518902	3L_24518902_SNP [dm3] 3L_24525802_SNP [dm6]	T	C	1.601e^-4	0.819	INTERGENIC
2R	1376931	2R_1376931_SNP [dm3] 2R_5489426_SNP [dm6]	A	T	1.607e^-4	0.819	INTRON CG30440	transposable element FlyBase
3R	10660612	3R_10660612_SNP [dm3] 3R_14834890_SNP [dm6]	A	C	1.611e^-4	0.819	INTRON btsz
2L	9840361	2L_9840361_SNP [dm3] 2L_9840361_SNP [dm6]	G	T	1.613e^-4	0.819	INTRON nAChRalpha6
3L	18854602	3L_18854602_SNP [dm3] 3L_18861502_SNP [dm6]	C	A	1.617e^-4	0.819	DOWNSTREAM mir-315 INTERGENIC
3R	25908593	3R_25908593_SNP [dm3] 3R_30082871_SNP [dm6]	G	A	1.620e^-4	0.819	INTRON sima
2L	20036582	2L_20036582_SNP [dm3] 2L_20036582_SNP [dm6]	G	A	1.620e^-4	0.819	INTRON sNPF
3L	5896471	3L_5896471_SNP [dm3] 3L_5903371_SNP [dm6]	G	A	1.627e^-4	0.819	UPSTREAM QC DOWNSTREAM CG10486 INTRON CG32413
3L	9824836	3L_9824836_SNP [dm3] 3L_9831736_SNP [dm6]	T	G	1.629e^-4	0.819	INTRON CG43897
2L	16432716	2L_16432716_INS [dm3] 2L_16432716_INS [dm6]	C	CTAC	1.631e^-4	0.819	INTRON CG5888
3R	27063732	3R_27063732_SNP [dm3] 3R_31238010_SNP [dm6]	C	T	1.633e^-4	0.819	SYNONYMOUS_CODING qless
3R	14335077	3R_14335077_DEL [dm3] 3R_18509355_DEL [dm6]	ATTTGCCTCACTTGCACTA...	A	1.635e^-4	0.819	INTRON fru
X	11067021	X_11067021_SNP [dm3] X_11172988_SNP [dm6]	C	T	1.635e^-4	0.819	INTERGENIC
3R	16917718	3R_16917718_SNP [dm3] 3R_21091996_SNP [dm6]	G	C	1.638e^-4	0.819	INTRON RhoGAP93B & 1 other
2R	5738512	2R_5738512_SNP [dm3] 2R_9851007_SNP [dm6]	C	A	1.638e^-4	0.819	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	19900891	2L_19900891_SNP [dm3] 2L_19900891_SNP [dm6]	C	T	1.639e^-4	0.819	INTRON sick
2L	4314984	2L_4314984_SNP [dm3] 2L_4314984_SNP [dm6]	T	C	1.641e^-4	0.819	UTR_3_PRIME tutl INTRON tutl
2L	20057138	2L_20057138_SNP [dm3] 2L_20057138_SNP [dm6]	G	A	1.643e^-4	0.819	DOWNSTREAM sNPF INTERGENIC
3R	21815897	3R_21815897_SNP [dm3] 3R_25990175_SNP [dm6]	A	G	1.644e^-4	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18875722	3L_18875722_SNP [dm3] 3L_18882622_SNP [dm6]	C	T	1.644e^-4	0.819	INTRON CG3961
X	8912537	X_8912537_SNP [dm3] X_9018504_SNP [dm6]	C	T	1.645e^-4	0.819	INTRON CR43836 & 1 other
3L	11909757	3L_11909757_SNP [dm3] 3L_11916657_SNP [dm6]	C	A	1.652e^-4	0.819	INTRON CG44837
3L	18312173	3L_18312173_SNP [dm3] 3L_18319073_SNP [dm6]	T	G	1.654e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21031035	3R_21031035_SNP [dm3] 3R_25205313_SNP [dm6]	A	G	1.658e^-4	0.819	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	7576375	X_7576375_SNP [dm3] X_7682342_SNP [dm6]	G	A	1.663e^-4	0.819	UTR_3_PRIME CHES-1-like
3R	15577940	3R_15577940_SNP [dm3] 3R_19752218_SNP [dm6]	G	A	1.671e^-4	0.819	INTRON GluClalpha
2L	5672197	2L_5672197_SNP [dm3] 2L_5672197_SNP [dm6]	G	T	1.673e^-4	0.819	INTERGENIC
2R	18467256	2R_18467256_SNP [dm3] 2R_22579751_SNP [dm6]	G	C	1.674e^-4	0.819	INTRON dnr1
2R	18004607	2R_18004607_SNP [dm3] 2R_22117102_SNP [dm6]	T	A	1.679e^-4	0.819	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
3L	6661370	3L_6661370_SNP [dm3] 3L_6668270_SNP [dm6]	T	A	1.680e^-4	0.819	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17859424	2R_17859424_SNP [dm3] 2R_21971919_SNP [dm6]	G	T	1.681e^-4	0.819	UPSTREAM CG34029 INTERGENIC
3R	21816818	3R_21816818_SNP [dm3] 3R_25991096_SNP [dm6]	A	T	1.682e^-4	0.819	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3L	3288885	3L_3288885_SNP [dm3] 3L_3288885_SNP [dm6]	T	C	1.687e^-4	0.819	INTRON CG12017
3R	8041607	3R_8041607_SNP [dm3] 3R_12215885_SNP [dm6]	G	T	1.689e^-4	0.819	SYNONYMOUS_CODING CG4848 UTR_3_PRIME CG4848 DOWNSTREAM CG14742
3L	6656757	3L_6656757_SNP [dm3] 3L_6663657_SNP [dm6]	T	G	1.692e^-4	0.819	DOWNSTREAM eIF4E-4 INTERGENIC
2R	7661549	2R_7661549_SNP [dm3] 2R_11774044_SNP [dm6]	T	C	1.697e^-4	0.819	INTRON ths
3L	6662214	3L_6662214_SNP [dm3] 3L_6669114_SNP [dm6]	G	A	1.698e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	10622643	3L_10622643_SNP [dm3] 3L_10629543_SNP [dm6]	T	C	1.704e^-4	0.819	SYNONYMOUS_CODING CG42536 DOWNSTREAM CG42535
2L	18716848	2L_18716848_SNP [dm3] 2L_18716848_SNP [dm6]	G	T	1.711e^-4	0.819	INTRON CG10348
2R	2819664	2R_2819664_SNP [dm3] 2R_6932159_SNP [dm6]	G	A	1.712e^-4	0.819	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4423751	3L_4423751_SNP [dm3] 3L_4423751_SNP [dm6]	C	T	1.714e^-4	0.819	INTRON CG15020
X	8398259	X_8398259_DEL [dm3] X_8504226_DEL [dm6]	TT	T	1.718e^-4	0.819	INTRON CG33181
3R	10666840	3R_10666840_SNP [dm3] 3R_14841118_SNP [dm6]	G	A	1.722e^-4	0.819	INTRON btsz
2R	5309487	2R_5309487_SNP [dm3] 2R_9421982_SNP [dm6]	G	A	1.726e^-4	0.819	UTR_3_PRIME CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	2805627	2R_2805627_DEL [dm3] 2R_6918122_DEL [dm6]	AAAAA	CGAT	1.730e^-4	0.819	INTRON CG30158
3R	8873305	3R_8873305_SNP [dm3] 3R_13047583_SNP [dm6]	T	C	1.730e^-4	0.819	UPSTREAM CG31157 DOWNSTREAM Hsc70-2 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19896687	2L_19896687_SNP [dm3] 2L_19896687_SNP [dm6]	C	G	1.732e^-4	0.819	INTRON sick
2R	4566312	2R_4566312_SNP [dm3] 2R_8678807_SNP [dm6]	T	C	1.732e^-4	0.819	SYNONYMOUS_CODING Acsl DOWNSTREAM CG30355
X	6913904	X_6913904_SNP [dm3] X_7019871_SNP [dm6]	T	G	1.736e^-4	0.819	INTERGENIC
3R	8411221	3R_8411221_SNP [dm3] 3R_12585499_SNP [dm6]	T	A	1.738e^-4	0.819	INTRON Octbeta2R
X	15552704	X_15552704_INS [dm3] X_15658671_INS [dm6]	A	ATGTACAAGCAGCA...	1.740e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	20830615	3R_20830615_SNP [dm3] 3R_25004893_SNP [dm6]	C	G	1.745e^-4	0.819	INTRON tnc
3R	14162560	3R_14162560_SNP [dm3] 3R_18336838_SNP [dm6]	A	T	1.747e^-4	0.819	INTRON CG15803
3R	10243881	3R_10243881_SNP [dm3] 3R_14418159_SNP [dm6]	G	A	1.747e^-4	0.819	UPSTREAM natalisin INTRON cv-c
2L	5674184	2L_5674184_SNP [dm3] 2L_5674184_SNP [dm6]	T	A	1.754e^-4	0.819	INTERGENIC
3L	2495915	3L_2495915_SNP [dm3] 3L_2495915_SNP [dm6]	G	C	1.757e^-4	0.819	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15552751	X_15552751_DEL [dm3] X_15658718_DEL [dm6]	TCCAAATCGAT...	T	1.765e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	13559078	3R_13559078_SNP [dm3] 3R_17733356_SNP [dm6]	G	C	1.765e^-4	0.819	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	8405114	X_8405114_SNP [dm3] X_8511081_SNP [dm6]	A	C	1.774e^-4	0.819	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4409099	3L_4409099_SNP [dm3] 3L_4409099_SNP [dm6]	G	A	1.776e^-4	0.819	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	9369487	2L_9369487_SNP [dm3] 2L_9369487_SNP [dm6]	T	C	1.779e^-4	0.819	DOWNSTREAM Shawl INTERGENIC
3L	12596165	3L_12596165_SNP [dm3] 3L_12603065_SNP [dm6]	A	C	1.779e^-4	0.819	INTERGENIC
3R	13956752	3R_13956752_INS [dm3] 3R_18131030_INS [dm6]	A	ACCA	1.784e^-4	0.819	INTRON sr	TF binding site mE1_TFBS_cad
2R	11790094	2R_11790094_SNP [dm3] 2R_15902589_SNP [dm6]	A	T	1.785e^-4	0.819	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	16259108	3R_16259108_SNP [dm3] 3R_20433386_SNP [dm6]	T	A	1.786e^-4	0.819	INTRON Gfrl
3R	14162574	3R_14162574_SNP [dm3] 3R_18336852_SNP [dm6]	G	A	1.787e^-4	0.819	INTRON CG15803
3R	13660113	3R_13660113_INS [dm3] 3R_17834391_INS [dm6]	A	AAATGTTG	1.787e^-4	0.819	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6087122	2R_6087122_SNP [dm3] 2R_10199617_SNP [dm6]	T	G	1.787e^-4	0.819	UTR_5_PRIME CG34221
3R	13317700	3R_13317700_SNP [dm3] 3R_17491978_SNP [dm6]	A	T	1.793e^-4	0.819	INTRON Dscam3
3R	10079362	3R_10079362_SNP [dm3] 3R_14253640_SNP [dm6]	A	G	1.807e^-4	0.819	INTRON Aats-met
3L	6338232	3L_6338232_SNP [dm3] 3L_6345132_SNP [dm6]	G	A	1.815e^-4	0.819	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3288371	3L_3288371_SNP [dm3] 3L_3288371_SNP [dm6]	T	C	1.821e^-4	0.819	INTRON CG12017	TF binding site mE1_TFBS_cad
3L	12108215	3L_12108215_SNP [dm3] 3L_12115115_SNP [dm6]	C	G	1.824e^-4	0.819	UPSTREAM l_3_j2D3 INTERGENIC
3L	9824838	3L_9824838_SNP [dm3] 3L_9831738_SNP [dm6]	A	T	1.824e^-4	0.819	INTRON CG43897
2L	14810840	2L_14810840_SNP [dm3] 2L_14810840_SNP [dm6]	T	A	1.829e^-4	0.819	INTRON CG33309
X	8912576	X_8912576_SNP [dm3] X_9018543_SNP [dm6]	T	G	1.830e^-4	0.819	INTRON CR43836 & 1 other
X	8912579	X_8912579_SNP [dm3] X_9018546_SNP [dm6]	A	G	1.830e^-4	0.819	INTRON CR43836 & 1 other
X	8912904	X_8912904_SNP [dm3] X_9018871_SNP [dm6]	A	G	1.830e^-4	0.819	INTRON CR43836 & 1 other
3L	7741808	3L_7741808_SNP [dm3] 3L_7748708_SNP [dm6]	A	G	1.836e^-4	0.819	UTR_3_PRIME CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5672103	2L_5672103_SNP [dm3] 2L_5672103_SNP [dm6]	G	T	1.837e^-4	0.819	INTERGENIC
2L	5672263	2L_5672263_SNP [dm3] 2L_5672263_SNP [dm6]	G	C	1.837e^-4	0.819	INTERGENIC
3L	6657299	3L_6657299_SNP [dm3] 3L_6664199_SNP [dm6]	G	A	1.840e^-4	0.819	DOWNSTREAM eIF4E-4 INTERGENIC
X	6913834	X_6913834_SNP [dm3] X_7019801_SNP [dm6]	A	G	1.845e^-4	0.819	INTERGENIC
2L	20092574	2L_20092574_SNP [dm3] 2L_20092574_SNP [dm6]	G	A	1.850e^-4	0.819	SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11676226	2L_11676226_SNP [dm3] 2L_11676226_SNP [dm6]	C	A	1.851e^-4	0.819	INTERGENIC
X	15552766	X_15552766_SNP [dm3] X_15658733_SNP [dm6]	C	T	1.862e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
X	11317673	X_11317673_INS [dm3] X_11423640_INS [dm6]	C	CG	1.870e^-4	0.822	UPSTREAM Gs2 INTRON Gs2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6653399	3L_6653399_SNP [dm3] 3L_6660299_SNP [dm6]	C	T	1.874e^-4	0.822	INTERGENIC
2L	5668892	2L_5668892_SNP [dm3] 2L_5668892_SNP [dm6]	T	A	1.878e^-4	0.822	INTRON Hsp60C	TF binding site mE1_TFBS_cad
3L	12543579	3L_12543579_SNP [dm3] 3L_12550479_SNP [dm6]	T	A	1.891e^-4	0.822	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8021374	3R_8021374_SNP [dm3] 3R_12195652_SNP [dm6]	T	C	1.891e^-4	0.822	UPSTREAM CG4810 DOWNSTREAM CG43450 INTERGENIC
3R	22871601	3R_22871601_SNP [dm3] 3R_27045879_SNP [dm6]	T	C	1.894e^-4	0.822	INTRON RYa-R
2L	10497049	2L_10497049_SNP [dm3] 2L_10497049_SNP [dm6]	G	A	1.896e^-4	0.822	INTRON Myo31DF
3L	11265867	3L_11265867_SNP [dm3] 3L_11272767_SNP [dm6]	T	C	1.901e^-4	0.822	INTERGENIC
3L	11695019	3L_11695019_SNP [dm3] 3L_11701919_SNP [dm6]	A	G	1.907e^-4	0.822	INTRON CG11658
3L	12108177	3L_12108177_SNP [dm3] 3L_12115077_SNP [dm6]	A	G	1.916e^-4	0.822	INTERGENIC
3L	13908501	3L_13908501_SNP [dm3] 3L_13915401_SNP [dm6]	C	T	1.925e^-4	0.822	INTRON Rgl
2R	9249830	2R_9249830_SNP [dm3] 2R_13362325_SNP [dm6]	C	G	1.929e^-4	0.822	EXON CR45312
X	4081339	X_4081339_SNP [dm3] X_4187306_SNP [dm6]	T	C	1.935e^-4	0.822	INTRON Fas2
3L	8554851	3L_8554851_SNP [dm3] 3L_8561751_SNP [dm6]	A	T	1.940e^-4	0.822	SYNONYMOUS_CODING rhea
3L	12256195	3L_12256195_SNP [dm3] 3L_12263095_SNP [dm6]	A	T	1.942e^-4	0.822	INTRON app
2L	4830827	2L_4830827_SNP [dm3] 2L_4830827_SNP [dm6]	A	T	1.943e^-4	0.822	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	4815100	2R_4815100_SNP [dm3] 2R_8927595_SNP [dm6]	G	A	1.943e^-4	0.822	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1168465	X_1168465_SNP [dm3] X_1274432_SNP [dm6]	G	A	1.943e^-4	0.822	UTR_5_PRIME Atf3
3R	14153753	3R_14153753_SNP [dm3] 3R_18328031_SNP [dm6]	G	C	1.953e^-4	0.823	INTRON CG31235
3L	7165921	3L_7165921_SNP [dm3] 3L_7172821_SNP [dm6]	G	T	1.954e^-4	0.823	INTRON Dscam2
3L	8080303	3L_8080303_SNP [dm3] 3L_8087203_SNP [dm6]	T	A	1.957e^-4	0.823	DOWNSTREAM CG7565 INTRON Ect4
3R	15476893	3R_15476893_SNP [dm3] 3R_19651171_SNP [dm6]	G	A	1.973e^-4	0.828	UTR_5_PRIME CG31219 DOWNSTREAM CG31220 INTRON CG31219
3L	4395813	3L_4395813_SNP [dm3] 3L_4395813_SNP [dm6]	T	A	1.998e^-4	0.833	INTRON slow
2L	13914867	2L_13914867_SNP [dm3] 2L_13914867_SNP [dm6]	C	T	1.998e^-4	0.833	UTR_5_PRIME Ance-3
3L	3288880	3L_3288880_SNP [dm3] 3L_3288880_SNP [dm6]	C	A	2.002e^-4	0.833	INTRON CG12017
2R	13053209	2R_13053209_SNP [dm3] 2R_17165704_SNP [dm6]	G	A	2.004e^-4	0.833	SYNONYMOUS_CODING CG10953
2R	2812884	2R_2812884_SNP [dm3] 2R_6925379_SNP [dm6]	G	T	2.015e^-4	0.835	UTR_3_PRIME mim DOWNSTREAM CG3358 & 1 other
3L	20066118	3L_20066118_SNP [dm3] 3L_20073018_SNP [dm6]	A	C	2.019e^-4	0.835	INTRON sNPF-R
3L	10103234	3L_10103234_SNP [dm3] 3L_10110134_SNP [dm6]	A	G	2.023e^-4	0.835	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21913412	2L_21913412_SNP [dm3] 2L_21913412_SNP [dm6]	C	T	2.037e^-4	0.838	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3R	25349752	3R_25349752_SNP [dm3] 3R_29524030_SNP [dm6]	A	G	2.039e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6460850	2R_6460850_SNP [dm3] 2R_10573345_SNP [dm6]	A	T	2.045e^-4	0.839	INTRON psq
3L	10208106	3L_10208106_SNP [dm3] 3L_10215006_SNP [dm6]	G	C	2.052e^-4	0.839	UPSTREAM CG8065 INTERGENIC
3L	4395805	3L_4395805_SNP [dm3] 3L_4395805_SNP [dm6]	T	A	2.060e^-4	0.839	INTRON slow
3L	7054345	3L_7054345_SNP [dm3] 3L_7061245_SNP [dm6]	G	A	2.062e^-4	0.839	INTRON CG8641
3L	8742330	3L_8742330_SNP [dm3] 3L_8749230_SNP [dm6]	G	C	2.065e^-4	0.839	UTR_3_PRIME CG13306	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21816821	3R_21816821_SNP [dm3] 3R_25991099_SNP [dm6]	C	T	2.070e^-4	0.839	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2R	8904314	2R_8904314_SNP [dm3] 2R_13016809_SNP [dm6]	G	C	2.074e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4418206	3L_4418206_SNP [dm3] 3L_4418206_SNP [dm6]	A	C	2.079e^-4	0.839	NON_SYNONYMOUS_CODING DOR UPSTREAM DOR
3L	7055287	3L_7055287_SNP [dm3] 3L_7062187_SNP [dm6]	A	G	2.080e^-4	0.839	INTRON CG8641
2R	17042941	2R_17042941_SNP [dm3] 2R_21155436_SNP [dm6]	G	A	2.094e^-4	0.842	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16649937	3R_16649937_SNP [dm3] 3R_20824215_SNP [dm6]	G	T	2.098e^-4	0.842	START_GAINED CG17272 UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15313632	3R_15313632_SNP [dm3] 3R_19487910_SNP [dm6]	T	C	2.106e^-4	0.844	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	8340890	2R_8340890_INS [dm3] 2R_12453385_INS [dm6]	T	TT	2.115e^-4	0.845	UTR_5_PRIME Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11066982	X_11066982_DEL [dm3] X_11172949_DEL [dm6]	AC	A	2.124e^-4	0.847	INTERGENIC
2R	7604381	2R_7604381_SNP [dm3] 2R_11716876_SNP [dm6]	T	A	2.131e^-4	0.848	INTRON pyr	TF binding site BDTNP1_TFBS_dl
3L	3288756	3L_3288756_SNP [dm3] 3L_3288756_SNP [dm6]	T	A	2.141e^-4	0.85	INTRON CG12017
3L	8555500	3L_8555500_SNP [dm3] 3L_8562400_SNP [dm6]	C	T	2.145e^-4	0.85	SYNONYMOUS_CODING rhea
2R	4684205	2R_4684205_SNP [dm3] 2R_8796700_SNP [dm6]	T	G	2.151e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	10524739	2L_10524739_SNP [dm3] 2L_10524739_SNP [dm6]	G	T	2.157e^-4	0.851	INTERGENIC
3L	6347423	3L_6347423_SNP [dm3] 3L_6354323_SNP [dm6]	C	T	2.175e^-4	0.854	INTERGENIC
3L	5894821	3L_5894821_SNP [dm3] 3L_5901721_SNP [dm6]	G	T	2.175e^-4	0.854	DOWNSTREAM CG32409 INTRON QC
3L	14114325	3L_14114325_DEL [dm3] 3L_14121225_DEL [dm6]	TGGTG	CC	2.177e^-4	0.854	INTRON Sox21b	insulator Insulator_Class_II.mE01
X	15072732	X_15072732_SNP [dm3] X_15178699_SNP [dm6]	G	T	2.185e^-4	0.854	NON_SYNONYMOUS_CODING CG43737	TF binding site mE1_TFBS_chinmo
2L	19896878	2L_19896878_SNP [dm3] 2L_19896878_SNP [dm6]	C	A	2.187e^-4	0.854	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23345044	3R_23345044_SNP [dm3] 3R_27519322_SNP [dm6]	C	T	2.197e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1361455	2R_1361455_DEL [dm3] 2R_5473950_DEL [dm6]	GACAACAAACTTGCGCTGCG...	G	2.219e^-4	0.859	INTRON CG30440	transposable element FlyBase
2L	18716978	2L_18716978_SNP [dm3] 2L_18716978_SNP [dm6]	A	T	2.225e^-4	0.859	INTRON CG10348
X	13426901	X_13426901_SNP [dm3] X_13532868_SNP [dm6]	G	A	2.225e^-4	0.859	INTERGENIC
2R	9413818	2R_9413818_SNP [dm3] 2R_13526313_SNP [dm6]	T	C	2.227e^-4	0.859	UTR_3_PRIME CG13332 INTRON Vmat
3R	24156399	3R_24156399_SNP [dm3] 3R_28330677_SNP [dm6]	A	T	2.227e^-4	0.859	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9198698	3L_9198698_SNP [dm3] 3L_9205598_SNP [dm6]	G	T	2.238e^-4	0.861	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2R	14227947	2R_14227947_SNP [dm3] 2R_18340442_SNP [dm6]	C	G	2.242e^-4	0.861	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2324529	3L_2324529_SNP [dm3] 3L_2324529_SNP [dm6]	T	A	2.254e^-4	0.863	INTRON MsR1
2R	10507488	2R_10507488_SNP [dm3] 2R_14619983_SNP [dm6]	C	G	2.266e^-4	0.863	NON_SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19896863	2L_19896863_SNP [dm3] 2L_19896863_SNP [dm6]	G	A	2.270e^-4	0.863	INTRON sick	TF binding site mE1_TFBS_sens
2R	16381847	2R_16381847_DEL [dm3] 2R_20494342_DEL [dm6]	CA	C	2.292e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7453569	2R_7453569_SNP [dm3] 2R_11566064_SNP [dm6]	A	G	2.301e^-4	0.863	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	4395736	3L_4395736_SNP [dm3] 3L_4395736_SNP [dm6]	C	G	2.317e^-4	0.863	INTRON slow
2L	14810837	2L_14810837_SNP [dm3] 2L_14810837_SNP [dm6]	G	T	2.326e^-4	0.863	INTRON CG33309
3R	16643016	3R_16643016_SNP [dm3] 3R_20817294_SNP [dm6]	G	T	2.326e^-4	0.863	INTRON CG17270
3R	21809165	3R_21809165_SNP [dm3] 3R_25983443_SNP [dm6]	A	T	2.332e^-4	0.863	DOWNSTREAM CG42261 INTRON Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12525407	3L_12525407_SNP [dm3] 3L_12532307_SNP [dm6]	T	A	2.333e^-4	0.863	NON_SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14151915	3R_14151915_SNP [dm3] 3R_18326193_SNP [dm6]	G	A	2.335e^-4	0.863	SYNONYMOUS_CODING CG31235	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10659809	3R_10659809_SNP [dm3] 3R_14834087_SNP [dm6]	T	A	2.338e^-4	0.863	INTRON btsz
2L	5672330	2L_5672330_SNP [dm3] 2L_5672330_SNP [dm6]	C	T	2.341e^-4	0.863	INTERGENIC
2R	2816563	2R_2816563_DEL [dm3] 2R_6929058_DEL [dm6]	CCG	C	2.346e^-4	0.863	INTRON mim	TF binding site mE1_TFBS_cad
3R	14356021	3R_14356021_DEL [dm3] 3R_18530299_DEL [dm6]	GGT	G	2.348e^-4	0.863	INTRON fru
3R	14356025	3R_14356025_SNP [dm3] 3R_18530303_SNP [dm6]	G	C	2.348e^-4	0.863	INTRON fru
2L	10715641	2L_10715641_SNP [dm3] 2L_10715641_SNP [dm6]	A	G	2.349e^-4	0.863	INTERGENIC
3L	11694931	3L_11694931_INS [dm3] 3L_11701831_INS [dm6]	A	AA	2.369e^-4	0.863	INTRON CG11658	TF binding site mE1_TFBS_cad
3L	11419384	3L_11419384_SNP [dm3] 3L_11426284_SNP [dm6]	C	T	2.374e^-4	0.863	SYNONYMOUS_CODING CG7560	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	15705670	3L_15705670_SNP [dm3] 3L_15712570_SNP [dm6]	A	C	2.377e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	6968444	3R_6968444_SNP [dm3] 3R_11142722_SNP [dm6]	A	G	2.380e^-4	0.863	INTERGENIC
3R	25789425	3R_25789425_SNP [dm3] 3R_29963703_SNP [dm6]	G	C	2.383e^-4	0.863	INTRON TkR99D
3R	25368805	3R_25368805_SNP [dm3] 3R_29543083_SNP [dm6]	A	G	2.394e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20601170	2R_20601170_SNP [dm3] 2R_24713647_SNP [dm6]	G	T	2.394e^-4	0.863	INTRON Mid1	TF binding site mE1_TFBS_HSA
2R	6950235	2R_6950235_SNP [dm3] 2R_11062730_SNP [dm6]	A	G	2.407e^-4	0.863	INTRON luna
2L	14007421	2L_14007421_SNP [dm3] 2L_14007421_SNP [dm6]	A	G	2.417e^-4	0.863	UPSTREAM CG42692 INTERGENIC
3L	8555468	3L_8555468_SNP [dm3] 3L_8562368_SNP [dm6]	C	G	2.436e^-4	0.863	INTRON rhea
3R	24518757	3R_24518757_SNP [dm3] 3R_28693035_SNP [dm6]	G	A	2.438e^-4	0.863	INTRON CG9990	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17600155	2R_17600155_SNP [dm3] 2R_21712650_SNP [dm6]	T	C	2.439e^-4	0.863	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15293154	3R_15293154_SNP [dm3] 3R_19467432_SNP [dm6]	C	A	2.441e^-4	0.863	INTRON Dys
3R	4614656	3R_4614656_SNP [dm3] 3R_8788934_SNP [dm6]	A	C	2.445e^-4	0.863	INTRON Pif1B & 1 other
3L	3288616	3L_3288616_SNP [dm3] 3L_3288616_SNP [dm6]	T	A	2.459e^-4	0.863	INTRON CG12017
3L	24518904	3L_24518904_DEL [dm3] 3L_24525804_DEL [dm6]	CAATTGACATCATA...	C	2.465e^-4	0.863	INTERGENIC
2L	16753764	2L_16753764_SNP [dm3] 2L_16753764_SNP [dm6]	G	C	2.474e^-4	0.863	UPSTREAM yellow-b DOWNSTREAM CG17912 INTERGENIC
3L	8525248	3L_8525248_SNP [dm3] 3L_8532148_SNP [dm6]	G	A	2.479e^-4	0.863	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17258384	2R_17258384_DEL [dm3] 2R_21370879_DEL [dm6]	CA	C	2.481e^-4	0.863	INTRON cv-2
2L	6018309	2L_6018309_SNP [dm3] 2L_6018309_SNP [dm6]	T	C	2.484e^-4	0.863	INTRON H2.0
3R	16122856	3R_16122856_SNP [dm3] 3R_20297134_SNP [dm6]	G	A	2.485e^-4	0.863	SYNONYMOUS_CODING cic INTRON cic
2L	15104461	2L_15104461_SNP [dm3] 2L_15104461_SNP [dm6]	T	C	2.494e^-4	0.863	INTERGENIC
3R	14447261	3R_14447261_INS [dm3] 3R_18621539_INS [dm6]	G	GT	2.502e^-4	0.863	UPSTREAM CG14304 INTRON qin	TF binding site BDTNP1_TFBS_dl
3L	4393470	3L_4393470_SNP [dm3] 3L_4393470_SNP [dm6]	T	C	2.502e^-4	0.863	INTRON slow
3L	4395801	3L_4395801_DEL [dm3] 3L_4395801_DEL [dm6]	TGC	A	2.507e^-4	0.863	INTRON slow
3L	4413253	3L_4413253_SNP [dm3] 3L_4413253_SNP [dm6]	A	C	2.512e^-4	0.863	INTRON DOR	TF binding site BDTNP1_TFBS_hb
2R	18158193	2R_18158193_SNP [dm3] 2R_22270688_SNP [dm6]	A	T	2.515e^-4	0.863	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11181219	3L_11181219_SNP [dm3] 3L_11188119_SNP [dm6]	T	G	2.527e^-4	0.863	INTRON GlcAT-P
2L	19928420	2L_19928420_SNP [dm3] 2L_19928420_SNP [dm6]	T	G	2.532e^-4	0.863	INTRON sick
3L	4394858	3L_4394858_SNP [dm3] 3L_4394858_SNP [dm6]	A	T	2.532e^-4	0.863	INTRON slow
3R	14031319	3R_14031319_SNP [dm3] 3R_18205597_SNP [dm6]	T	C	2.532e^-4	0.863	INTRON CG7985
3R	10079303	3R_10079303_SNP [dm3] 3R_14253581_SNP [dm6]	C	T	2.537e^-4	0.863	INTRON Aats-met
3R	8938810	3R_8938810_SNP [dm3] 3R_13113088_SNP [dm6]	A	G	2.545e^-4	0.863	INTRON timeout
2R	14705661	2R_14705661_SNP [dm3] 2R_18818156_SNP [dm6]	A	T	2.550e^-4	0.863	INTERGENIC
3L	6656891	3L_6656891_SNP [dm3] 3L_6663791_SNP [dm6]	A	G	2.552e^-4	0.863	DOWNSTREAM eIF4E-4 INTERGENIC
2R	1245995	2R_1245995_SNP [dm3] 2R_5358490_SNP [dm6]	C	T	2.564e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	4394502	3L_4394502_SNP [dm3] 3L_4394502_SNP [dm6]	G	A	2.569e^-4	0.863	INTRON slow	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16844600	X_16844600_SNP [dm3] X_16950567_SNP [dm6]	G	A	2.578e^-4	0.863	INTRON RhoGAP15B
3L	12145934	3L_12145934_SNP [dm3] 3L_12152834_SNP [dm6]	T	C	2.585e^-4	0.863	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4414883	3L_4414883_INS [dm3] 3L_4414883_INS [dm6]	T	TA	2.595e^-4	0.863	INTRON DOR
2R	15128906	2R_15128906_SNP [dm3] 2R_19241401_SNP [dm6]	G	C	2.599e^-4	0.863	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17932347	2R_17932347_SNP [dm3] 2R_22044842_SNP [dm6]	C	A	2.601e^-4	0.863	INTERGENIC
3L	751406	3L_751406_INS [dm3] 3L_751406_INS [dm6]	A	ACAGTCTTTAGCCCAC...	2.604e^-4	0.863	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	751407	3L_751407_DEL [dm3] 3L_751407_DEL [dm6]	ACTGTGG	A	2.604e^-4	0.863	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10661406	3R_10661406_INS [dm3] 3R_14835684_INS [dm6]	C	TT	2.611e^-4	0.863	INTRON btsz
3R	27057837	3R_27057837_SNP [dm3] 3R_31232115_SNP [dm6]	C	G	2.617e^-4	0.863	SYNONYMOUS_CODING CG15563 DOWNSTREAM CG12054 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	4395793	3L_4395793_SNP [dm3] 3L_4395793_SNP [dm6]	A	C	2.620e^-4	0.863	INTRON slow
3R	15283255	3R_15283255_SNP [dm3] 3R_19457533_SNP [dm6]	A	T	2.622e^-4	0.863	UTR_3_PRIME CG31221
3L	3288455	3L_3288455_SNP [dm3] 3L_3288455_SNP [dm6]	G	A	2.625e^-4	0.863	INTRON CG12017
3L	9286993	3L_9286993_SNP [dm3] 3L_9293893_SNP [dm6]	A	G	2.626e^-4	0.863	INTERGENIC
3R	10786893	3R_10786893_SNP [dm3] 3R_14961171_SNP [dm6]	A	C	2.628e^-4	0.863	INTERGENIC
2L	12846984	2L_12846984_SNP [dm3] 2L_12846984_SNP [dm6]	C	G	2.642e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20132890	2L_20132890_SNP [dm3] 2L_20132890_SNP [dm6]	A	G	2.650e^-4	0.863	DOWNSTREAM CG10651 INTERGENIC	TF binding site mE1_TFBS_inv
3R	14287022	3R_14287022_SNP [dm3] 3R_18461300_SNP [dm6]	C	T	2.655e^-4	0.863	INTRON fru
3R	7928198	3R_7928198_SNP [dm3] 3R_12102476_SNP [dm6]	T	A	2.660e^-4	0.863	INTRON dpr17
2L	5667297	2L_5667297_SNP [dm3] 2L_5667297_SNP [dm6]	G	A	2.668e^-4	0.863	INTRON Hsp60C
2L	5673558	2L_5673558_SNP [dm3] 2L_5673558_SNP [dm6]	G	T	2.668e^-4	0.863	INTERGENIC
3R	27059368	3R_27059368_SNP [dm3] 3R_31233646_SNP [dm6]	A	G	2.671e^-4	0.863	SYNONYMOUS_CODING CG15564	TF binding site mE1_TFBS_chinmo
2L	1663576	2L_1663576_SNP [dm3] 2L_1663576_SNP [dm6]	T	C	2.673e^-4	0.863	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	13959046	3R_13959046_SNP [dm3] 3R_18133324_SNP [dm6]	G	A	2.687e^-4	0.863	UTR_3_PRIME sr
2R	3811144	2R_3811144_INS [dm3] 2R_7923639_INS [dm6]	A	AG	2.690e^-4	0.863	INTRON Kdm4A	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12844018	3L_12844018_SNP [dm3] 3L_12850918_SNP [dm6]	T	C	2.695e^-4	0.863	SYNONYMOUS_CODING Wbp2 UPSTREAM CG10948	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3288713	3L_3288713_SNP [dm3] 3L_3288713_SNP [dm6]	T	C	2.700e^-4	0.863	INTRON CG12017
3R	13559087	3R_13559087_SNP [dm3] 3R_17733365_SNP [dm6]	C	A	2.703e^-4	0.863	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1959823	3R_1959823_SNP [dm3] 3R_6134101_SNP [dm6]	G	T	2.703e^-4	0.863	INTERGENIC
3L	1056066	3L_1056066_SNP [dm3] 3L_1056066_SNP [dm6]	C	T	2.703e^-4	0.863	INTRON bab1
2R	3811143	2R_3811143_SNP [dm3] 2R_7923638_SNP [dm6]	T	A	2.704e^-4	0.863	INTRON Kdm4A	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	5544191	2R_5544191_SNP [dm3] 2R_9656686_SNP [dm6]	A	T	2.705e^-4	0.863	INTRON Mmp2
2R	8341258	2R_8341258_SNP [dm3] 2R_12453753_SNP [dm6]	C	A	2.713e^-4	0.863	SYNONYMOUS_CODING Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2809219	2R_2809219_SNP [dm3] 2R_6921714_SNP [dm6]	G	A	2.713e^-4	0.863	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4470588	X_4470588_SNP [dm3] X_4576555_SNP [dm6]	C	T	2.723e^-4	0.863	INTRON CR32773
3L	10454887	3L_10454887_SNP [dm3] 3L_10461787_SNP [dm6]	C	T	2.726e^-4	0.863	SYNONYMOUS_CODING Gem3
2R	5738550	2R_5738550_SNP [dm3] 2R_9851045_SNP [dm6]	G	A	2.734e^-4	0.863	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
2L	11705921	2L_11705921_SNP [dm3] 2L_11705921_SNP [dm6]	T	C	2.741e^-4	0.863	INTERGENIC
3L	12088395	3L_12088395_SNP [dm3] 3L_12095295_SNP [dm6]	G	A	2.751e^-4	0.863	INTERGENIC
3L	17593846	3L_17593846_SNP [dm3] 3L_17600746_SNP [dm6]	C	T	2.753e^-4	0.863	INTRON Eip74EF
3R	5466393	3R_5466393_SNP [dm3] 3R_9640671_SNP [dm6]	G	T	2.754e^-4	0.863	UTR_5_PRIME Dh44 INTRON Dh44
3R	5466405	3R_5466405_SNP [dm3] 3R_9640683_SNP [dm6]	G	A	2.754e^-4	0.863	UTR_5_PRIME Dh44 INTRON Dh44
2L	18717015	2L_18717015_SNP [dm3] 2L_18717015_SNP [dm6]	G	A	2.757e^-4	0.863	INTRON CG10348
3L	12012470	3L_12012470_INS [dm3] 3L_12019370_INS [dm6]	A	AA	2.766e^-4	0.863	INTRON rols
3R	27058750	3R_27058750_SNP [dm3] 3R_31233028_SNP [dm6]	T	C	2.780e^-4	0.863	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
3R	4426880	3R_4426880_SNP [dm3] 3R_8601158_SNP [dm6]	T	G	2.787e^-4	0.863	INTRON 5-HT2B
3R	16061877	3R_16061877_SNP [dm3] 3R_20236155_SNP [dm6]	C	T	2.794e^-4	0.863	INTRON Nlg4
X	9862241	X_9862241_SNP [dm3] X_9968208_SNP [dm6]	A	T	2.799e^-4	0.863	INTRON CG43386
2L	3599899	2L_3599899_SNP [dm3] 2L_3599899_SNP [dm6]	G	T	2.803e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7332513	3L_7332513_SNP [dm3] 3L_7339413_SNP [dm6]	A	G	2.805e^-4	0.863	SPLICE_SITE_REGION lark UTR_5_PRIME lark UPSTREAM lark & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21030781	3R_21030781_SNP [dm3] 3R_25205059_SNP [dm6]	G	A	2.809e^-4	0.863	INTRON CG13654 & 1 other
3L	9544910	3L_9544910_SNP [dm3] 3L_9551810_SNP [dm6]	C	G	2.811e^-4	0.863	INTRON CG42673
3R	14162535	3R_14162535_SNP [dm3] 3R_18336813_SNP [dm6]	G	A	2.814e^-4	0.863	INTRON CG15803
3R	15283242	3R_15283242_DEL [dm3] 3R_19457520_DEL [dm6]	GT	C	2.818e^-4	0.863	UTR_3_PRIME CG31221
X	19079686	X_19079686_SNP [dm3] X_19185653_SNP [dm6]	T	G	2.823e^-4	0.863	INTRON CG33253	TF binding site mE1_TFBS_HSA
2L	13914868	2L_13914868_SNP [dm3] 2L_13914868_SNP [dm6]	A	T	2.838e^-4	0.863	UTR_5_PRIME Ance-3
2R	6817768	2R_6817768_SNP [dm3] 2R_10930263_SNP [dm6]	A	T	2.842e^-4	0.863	INTERGENIC
2L	10717904	2L_10717904_SNP [dm3] 2L_10717904_SNP [dm6]	G	A	2.845e^-4	0.863	INTERGENIC
2R	14229769	2R_14229769_SNP [dm3] 2R_18342264_SNP [dm6]	A	C	2.851e^-4	0.863	INTRON sbb	TF binding site BDTNP1_TFBS_da
X	10072116	X_10072116_SNP [dm3] X_10178083_SNP [dm6]	C	T	2.852e^-4	0.863	INTRON CG43902 & 1 other
3L	12145913	3L_12145913_SNP [dm3] 3L_12152813_SNP [dm6]	C	T	2.854e^-4	0.863	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12145925	3L_12145925_SNP [dm3] 3L_12152825_SNP [dm6]	C	T	2.854e^-4	0.863	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13660015	3R_13660015_SNP [dm3] 3R_17834293_SNP [dm6]	G	C	2.856e^-4	0.863	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	20101885	2L_20101885_SNP [dm3] 2L_20101885_SNP [dm6]	C	A	2.859e^-4	0.863	INTRON Kua
3R	8024867	3R_8024867_SNP [dm3] 3R_12199145_SNP [dm6]	C	T	2.863e^-4	0.863	SYNONYMOUS_CODING CG3809
3L	17498177	3L_17498177_SNP [dm3] 3L_17505077_SNP [dm6]	C	T	2.866e^-4	0.863	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4081338	X_4081338_SNP [dm3] X_4187305_SNP [dm6]	A	G	2.880e^-4	0.863	INTRON Fas2
2R	18004868	2R_18004868_SNP [dm3] 2R_22117363_SNP [dm6]	C	T	2.880e^-4	0.863	INTRON Vrp1
X	19348036	X_19348036_DEL [dm3] X_19454003_DEL [dm6]	TT	T	2.889e^-4	0.863	INTRON kek5
3L	6658893	3L_6658893_SNP [dm3] 3L_6665793_SNP [dm6]	A	C	2.902e^-4	0.863	UPSTREAM eIF4E-4 DOWNSTREAM CR45173 & 1 other INTERGENIC
3R	5466410	3R_5466410_SNP [dm3] 3R_9640688_SNP [dm6]	C	A	2.909e^-4	0.863	UTR_5_PRIME Dh44 INTRON Dh44
3L	18942884	3L_18942884_SNP [dm3] 3L_18949784_SNP [dm6]	G	C	2.916e^-4	0.863	UPSTREAM CG6836 INTERGENIC
3L	11909755	3L_11909755_SNP [dm3] 3L_11916655_SNP [dm6]	T	A	2.916e^-4	0.863	INTRON CG44837
2R	10706434	2R_10706434_SNP [dm3] 2R_14818929_SNP [dm6]	A	C	2.916e^-4	0.863	INTRON CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15021565	2R_15021565_SNP [dm3] 2R_19134060_SNP [dm6]	T	A	2.923e^-4	0.863	UTR_3_PRIME CG15118 DOWNSTREAM botv
2R	17600190	2R_17600190_SNP [dm3] 2R_21712685_SNP [dm6]	T	A	2.923e^-4	0.863	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17600207	2R_17600207_SNP [dm3] 2R_21712702_SNP [dm6]	C	T	2.923e^-4	0.863	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18713479	3R_18713479_SNP [dm3] 3R_22887757_SNP [dm6]	C	G	2.928e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14130474	2L_14130474_INS [dm3] 2L_14130474_INS [dm6]	T	TT	2.934e^-4	0.863	INTERGENIC
2L	12107696	2L_12107696_SNP [dm3] 2L_12107696_SNP [dm6]	G	A	2.935e^-4	0.863	UTR_3_PRIME Rab6 DOWNSTREAM Aats-thr
2R	9288074	2R_9288074_SNP [dm3] 2R_13400569_SNP [dm6]	G	A	2.937e^-4	0.863	INTERGENIC
3L	4393244	3L_4393244_SNP [dm3] 3L_4393244_SNP [dm6]	A	T	2.939e^-4	0.863	INTRON slow
3R	25368940	3R_25368940_SNP [dm3] 3R_29543218_SNP [dm6]	C	A	2.943e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11686599	3L_11686599_SNP [dm3] 3L_11693499_SNP [dm6]	T	C	2.944e^-4	0.863	DOWNSTREAM CG14135 & 1 other EXON CR43887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3830199	2R_3830199_SNP [dm3] 2R_7942694_SNP [dm6]	G	A	2.947e^-4	0.863	SYNONYMOUS_CODING CG14764 UPSTREAM CG34430 DOWNSTREAM CG30379
3L	7550215	3L_7550215_SNP [dm3] 3L_7557115_SNP [dm6]	A	C	2.952e^-4	0.863	NON_SYNONYMOUS_CODING CG14837
3R	9997584	3R_9997584_SNP [dm3] 3R_14171862_SNP [dm6]	A	C	2.953e^-4	0.863	UTR_3_PRIME Dop1R1
2L	7856671	2L_7856671_SNP [dm3] 2L_7856671_SNP [dm6]	G	T	2.965e^-4	0.863	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	19077574	X_19077574_SNP [dm3] X_19183541_SNP [dm6]	T	C	2.970e^-4	0.863	UTR_5_PRIME CG33253 UPSTREAM CG33253	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26064217	3R_26064217_SNP [dm3] 3R_30238495_SNP [dm6]	A	C	2.974e^-4	0.863	UPSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13559070	3R_13559070_SNP [dm3] 3R_17733348_SNP [dm6]	T	G	2.975e^-4	0.863	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11790010	2R_11790010_SNP [dm3] 2R_15902505_SNP [dm6]	T	G	2.983e^-4	0.863	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	14787152	3R_14787152_SNP [dm3] 3R_18961430_SNP [dm6]	C	T	2.983e^-4	0.863	INTRON CG42613 & 1 other
X	2616553	X_2616553_SNP [dm3] X_2722520_SNP [dm6]	G	A	2.984e^-4	0.863	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	18418809	2R_18418809_SNP [dm3] 2R_22531304_SNP [dm6]	A	T	3.001e^-4	0.863	INTRON px
X	5225248	X_5225248_SNP [dm3] X_5331215_SNP [dm6]	A	T	3.009e^-4	0.863	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14888855	3L_14888855_SNP [dm3] 3L_14895755_SNP [dm6]	A	G	3.009e^-4	0.863	INTERGENIC
2L	10155358	2L_10155358_SNP [dm3] 2L_10155358_SNP [dm6]	C	A	3.013e^-4	0.863	UTR_3_PRIME CG4839 INTRON CG44153
3L	4395821	3L_4395821_SNP [dm3] 3L_4395821_SNP [dm6]	A	T	3.019e^-4	0.863	INTRON slow
3R	15283253	3R_15283253_INS [dm3] 3R_19457531_INS [dm6]	T	TC	3.020e^-4	0.863	UTR_3_PRIME CG31221
X	7576239	X_7576239_SNP [dm3] X_7682206_SNP [dm6]	A	T	3.022e^-4	0.863	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	15310342	3R_15310342_SNP [dm3] 3R_19484620_SNP [dm6]	C	T	3.025e^-4	0.863	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15283228	3R_15283228_SNP [dm3] 3R_19457506_SNP [dm6]	A	C	3.035e^-4	0.863	UTR_3_PRIME CG31221
3R	26057620	3R_26057620_SNP [dm3] 3R_30231898_SNP [dm6]	G	A	3.045e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
2R	3805543	2R_3805543_SNP [dm3] 2R_7918038_SNP [dm6]	G	A	3.054e^-4	0.863	SYNONYMOUS_CODING Cul1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	5897140	3L_5897140_SNP [dm3] 3L_5904040_SNP [dm6]	C	T	3.074e^-4	0.863	UTR_5_PRIME CG32413 DOWNSTREAM CG10486
3L	5898035	3L_5898035_SNP [dm3] 3L_5904935_SNP [dm6]	T	A	3.074e^-4	0.863	NON_SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	5899328	3L_5899328_SNP [dm3] 3L_5906228_SNP [dm6]	C	T	3.074e^-4	0.863	SYNONYMOUS_CODING CG10486
2R	8340924	2R_8340924_SNP [dm3] 2R_12453419_SNP [dm6]	T	C	3.078e^-4	0.863	START_GAINED Lac UTR_5_PRIME Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16927615	2R_16927615_SNP [dm3] 2R_21040110_SNP [dm6]	G	T	3.086e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5897300	3L_5897300_SNP [dm3] 3L_5904200_SNP [dm6]	A	T	3.087e^-4	0.863	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3L	12121590	3L_12121590_SNP [dm3] 3L_12128490_SNP [dm6]	G	A	3.098e^-4	0.863	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC
3R	27065172	3R_27065172_SNP [dm3] 3R_31239450_SNP [dm6]	G	A	3.103e^-4	0.863	INTRON qless
3L	8552408	3L_8552408_SNP [dm3] 3L_8559308_SNP [dm6]	G	A	3.103e^-4	0.863	UPSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_Trl
2L	16726937	2L_16726937_SNP [dm3] 2L_16726937_SNP [dm6]	T	A	3.104e^-4	0.863	INTRON VhaSFD
3R	21816494	3R_21816494_SNP [dm3] 3R_25990772_SNP [dm6]	T	A	3.104e^-4	0.863	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3L	4395816	3L_4395816_INS [dm3] 3L_4395816_INS [dm6]	A	TGTTT	3.105e^-4	0.863	INTRON slow
2R	13579166	2R_13579166_SNP [dm3] 2R_17691661_SNP [dm6]	T	G	3.106e^-4	0.863	DOWNSTREAM HPS4 INTRON swi2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14705621	2R_14705621_SNP [dm3] 2R_18818116_SNP [dm6]	A	T	3.107e^-4	0.863	INTERGENIC
2L	10715606	2L_10715606_SNP [dm3] 2L_10715606_SNP [dm6]	G	C	3.109e^-4	0.863	INTERGENIC
2L	6118108	2L_6118108_DEL [dm3] 2L_6118108_DEL [dm6]	ATG	T	3.122e^-4	0.863	UPSTREAM CG31642 INTRON stai
2L	6118117	2L_6118117_SNP [dm3] 2L_6118117_SNP [dm6]	C	T	3.122e^-4	0.863	UPSTREAM CG31642 INTRON stai
3L	4394608	3L_4394608_SNP [dm3] 3L_4394608_SNP [dm6]	G	A	3.129e^-4	0.863	INTRON slow	TF binding site BDTNP1_TFBS_prd
3L	18201079	3L_18201079_DEL [dm3] 3L_18207979_DEL [dm6]	ATGTGCCGATTTAATGTGCA...	A	3.134e^-4	0.863	INTERGENIC
2L	7458422	2L_7458422_SNP [dm3] 2L_7458422_SNP [dm6]	T	C	3.144e^-4	0.863	SYNONYMOUS_CODING Gr28b INTRON Gr28b
X	4474001	X_4474001_SNP [dm3] X_4579968_SNP [dm6]	A	G	3.156e^-4	0.863	INTRON CR32773
2R	2808158	2R_2808158_SNP [dm3] 2R_6920653_SNP [dm6]	C	G	3.159e^-4	0.863	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17322128	X_17322128_SNP [dm3] X_17428095_SNP [dm6]	A	G	3.164e^-4	0.863	SYNONYMOUS_CODING CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2L	7861627	2L_7861627_INS [dm3] 2L_7861627_INS [dm6]	A	ATATATAATAA...	3.165e^-4	0.863	UPSTREAM TwdlE INTERGENIC
X	22250205	X_22250205_DEL [dm3] X_22848369_DEL [dm6]	TA	C	3.172e^-4	0.863	INTRON fog & 1 other
2L	10717838	2L_10717838_SNP [dm3] 2L_10717838_SNP [dm6]	G	T	3.175e^-4	0.863	INTERGENIC
3L	21388138	3L_21388138_SNP [dm3] 3L_21395038_SNP [dm6]	T	C	3.179e^-4	0.863	INTRON rgn
2R	17866754	2R_17866754_SNP [dm3] 2R_21979249_SNP [dm6]	A	G	3.180e^-4	0.863	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6969343	2R_6969343_SNP [dm3] 2R_11081838_SNP [dm6]	C	G	3.180e^-4	0.863	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14848198	3L_14848198_SNP [dm3] 3L_14855098_SNP [dm6]	G	A	3.191e^-4	0.863	INTRON CG17839
2R	1361955	2R_1361955_SNP [dm3] 2R_5474450_SNP [dm6]	A	T	3.193e^-4	0.863	INTRON CG30440	transposable element FlyBase
2L	13675939	2L_13675939_SNP [dm3] 2L_13675939_SNP [dm6]	A	T	3.193e^-4	0.863	DOWNSTREAM CG31814 INTERGENIC
2L	14440037	2L_14440037_SNP [dm3] 2L_14440037_SNP [dm6]	G	A	3.197e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6152783	3L_6152783_SNP [dm3] 3L_6159683_SNP [dm6]	T	G	3.197e^-4	0.863	INTERGENIC
3L	3288956	3L_3288956_SNP [dm3] 3L_3288956_SNP [dm6]	G	C	3.206e^-4	0.863	INTRON CG12017
3R	15770812	3R_15770812_SNP [dm3] 3R_19945090_SNP [dm6]	T	C	3.209e^-4	0.863	INTRON Hs6st
2L	16744347	2L_16744347_SNP [dm3] 2L_16744347_SNP [dm6]	C	T	3.222e^-4	0.863	SYNONYMOUS_CODING CG17912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3600639	2L_3600639_INS [dm3] 2L_3600639_INS [dm6]	C	CC	3.225e^-4	0.863	INTERGENIC
2L	14553721	2L_14553721_SNP [dm3] 2L_14553721_SNP [dm6]	C	T	3.226e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8076239	3L_8076239_SNP [dm3] 3L_8083139_SNP [dm6]	C	G	3.228e^-4	0.863	INTRON Ect4 EXON CR43974	TF binding site mE1_TFBS_cad
3R	9962694	3R_9962694_SNP [dm3] 3R_14136972_SNP [dm6]	C	A	3.234e^-4	0.863	INTERGENIC
2L	10563717	2L_10563717_SNP [dm3] 2L_10563717_SNP [dm6]	C	A	3.238e^-4	0.863	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17947446	3R_17947446_SNP [dm3] 3R_22121724_SNP [dm6]	A	T	3.244e^-4	0.863	INTRON CG42390
2R	13579177	2R_13579177_DEL [dm3] 2R_17691672_DEL [dm6]	CTTTAATATGCTC...	C	3.252e^-4	0.863	DOWNSTREAM HPS4 INTRON swi2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20674884	3R_20674884_SNP [dm3] 3R_24849162_SNP [dm6]	G	A	3.257e^-4	0.863	SYNONYMOUS_CODING Esp	TF binding site mE1_TFBS_sens
3R	14018191	3R_14018191_SNP [dm3] 3R_18192469_SNP [dm6]	T	G	3.266e^-4	0.863	UPSTREAM CG14313 DOWNSTREAM Ssdp INTERGENIC	TF binding site mE1_TFBS_cad
3L	18853245	3L_18853245_SNP [dm3] 3L_18860145_SNP [dm6]	T	G	3.269e^-4	0.863	UPSTREAM mir-315 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7856488	2L_7856488_SNP [dm3] 2L_7856488_SNP [dm6]	C	A	3.281e^-4	0.863	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5266559	3L_5266559_SNP [dm3] 3L_5273459_SNP [dm6]	T	G	3.286e^-4	0.863	UPSTREAM shep INTRON shep
2R	4381318	2R_4381318_SNP [dm3] 2R_8493813_SNP [dm6]	C	T	3.294e^-4	0.863	SYNONYMOUS_CODING mtt INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16844836	X_16844836_SNP [dm3] X_16950803_SNP [dm6]	T	A	3.294e^-4	0.863	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2R	17931785	2R_17931785_SNP [dm3] 2R_22044280_SNP [dm6]	T	C	3.294e^-4	0.863	INTERGENIC
3L	16723546	3L_16723546_SNP [dm3] 3L_16730446_SNP [dm6]	G	C	3.294e^-4	0.863	NON_SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11553521	3L_11553521_SNP [dm3] 3L_11560421_SNP [dm6]	T	G	3.310e^-4	0.863	INTRON Mob2
2R	4605935	2R_4605935_SNP [dm3] 2R_8718430_SNP [dm6]	G	A	3.312e^-4	0.863	UTR_3_PRIME CG14767 DOWNSTREAM PGRP-SC2
3R	17688067	3R_17688067_SNP [dm3] 3R_21862345_SNP [dm6]	C	A	3.316e^-4	0.863	UPSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11284316	3R_11284316_SNP [dm3] 3R_15458594_SNP [dm6]	A	C	3.320e^-4	0.863	INTRON AdamTS-A
3L	7057577	3L_7057577_DEL [dm3] 3L_7064477_DEL [dm6]	GG	G	3.322e^-4	0.863	INTRON CG8641
X	15552776	X_15552776_SNP [dm3] X_15658743_SNP [dm6]	A	T	3.323e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	19048600	3R_19048600_SNP [dm3] 3R_23222878_SNP [dm6]	T	A	3.325e^-4	0.863	SYNONYMOUS_CODING cnc UPSTREAM cnc
3R	20830619	3R_20830619_SNP [dm3] 3R_25004897_SNP [dm6]	A	G	3.330e^-4	0.863	INTRON tnc
2R	4613709	2R_4613709_SNP [dm3] 2R_8726204_SNP [dm6]	A	C	3.347e^-4	0.863	INTRON gcl	TF binding site mE1_TFBS_Trl
3L	11515114	3L_11515114_SNP [dm3] 3L_11522014_SNP [dm6]	G	T	3.352e^-4	0.863	SYNONYMOUS_CODING CG11714 DOWNSTREAM Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1326383	2R_1326383_SNP [dm3] 2R_5438878_SNP [dm6]	G	A	3.354e^-4	0.863	INTRON laccase2	transposable element FlyBase
3R	22871562	3R_22871562_SNP [dm3] 3R_27045840_SNP [dm6]	G	C	3.356e^-4	0.863	INTRON RYa-R
3L	20807598	3L_20807598_SNP [dm3] 3L_20814498_SNP [dm6]	G	C	3.356e^-4	0.863	SYNONYMOUS_CODING CG3618	TF binding site mE1_TFBS_chinmo
3L	11418973	3L_11418973_SNP [dm3] 3L_11425873_SNP [dm6]	A	T	3.362e^-4	0.863	INTRON CG7560	TF binding site mE1_TFBS_cad
2R	11686607	2R_11686607_SNP [dm3] 2R_15799102_SNP [dm6]	G	T	3.367e^-4	0.863	INTRON Zasp52 & 1 other
3R	10669674	3R_10669674_SNP [dm3] 3R_14843952_SNP [dm6]	C	T	3.368e^-4	0.863	INTRON btsz
2R	5231725	2R_5231725_SNP [dm3] 2R_9344220_SNP [dm6]	A	T	3.372e^-4	0.863	INTRON CG13954 & 1 other
3R	14452794	3R_14452794_DEL [dm3] 3R_18627072_DEL [dm6]	GC	T	3.374e^-4	0.863	INTRON qin
3R	14452876	3R_14452876_SNP [dm3] 3R_18627154_SNP [dm6]	G	C	3.374e^-4	0.863	INTRON qin
3R	14452877	3R_14452877_SNP [dm3] 3R_18627155_SNP [dm6]	C	T	3.374e^-4	0.863	INTRON qin
2R	2418283	2R_2418283_SNP [dm3] 2R_6530778_SNP [dm6]	T	C	3.376e^-4	0.863	INTRON jing
X	1882308	X_1882308_SNP [dm3] X_1988275_SNP [dm6]	G	A	3.383e^-4	0.863	INTRON Hr4
2R	10507478	2R_10507478_SNP [dm3] 2R_14619973_SNP [dm6]	A	T	3.392e^-4	0.863	NON_SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9666801	3L_9666801_SNP [dm3] 3L_9673701_SNP [dm6]	A	G	3.393e^-4	0.863	INTRON fry
2L	7909354	2L_7909354_SNP [dm3] 2L_7909354_SNP [dm6]	G	T	3.394e^-4	0.863	INTRON Snoo
2L	20434620	2L_20434620_SNP [dm3] 2L_20434620_SNP [dm6]	T	C	3.398e^-4	0.863	INTRON CG31688
3R	21030811	3R_21030811_SNP [dm3] 3R_25205089_SNP [dm6]	G	C	3.402e^-4	0.863	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	3177284	X_3177284_SNP [dm3] X_3283251_SNP [dm6]	T	C	3.403e^-4	0.863	INTRON dnc
X	4677551	X_4677551_SNP [dm3] X_4783518_SNP [dm6]	T	A	3.407e^-4	0.863	UPSTREAM CG15471 & 1 other INTERGENIC
3R	26017041	3R_26017041_SNP [dm3] 3R_30191319_SNP [dm6]	A	G	3.408e^-4	0.863	UPSTREAM CG9747 INTERGENIC
3R	9693817	3R_9693817_SNP [dm3] 3R_13868095_SNP [dm6]	T	C	3.414e^-4	0.863	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15022029	2R_15022029_SNP [dm3] 2R_19134524_SNP [dm6]	T	C	3.416e^-4	0.863	UTR_3_PRIME CG15118 DOWNSTREAM botv INTRON CG15118	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11512364	3L_11512364_SNP [dm3] 3L_11519264_SNP [dm6]	T	C	3.416e^-4	0.863	NON_SYNONYMOUS_CODING Fuca DOWNSTREAM CG7512
X	16805594	X_16805594_INS [dm3] X_16911561_INS [dm6]	A	ACA	3.418e^-4	0.863	INTRON CR44754
X	2473600	X_2473600_SNP [dm3] X_2579567_SNP [dm6]	T	C	3.423e^-4	0.863	DOWNSTREAM Pdfr INTRON Vha36-3
2R	9783659	2R_9783659_SNP [dm3] 2R_13896154_SNP [dm6]	C	T	3.425e^-4	0.863	INTRON shot
3R	21812193	3R_21812193_SNP [dm3] 3R_25986471_SNP [dm6]	T	C	3.428e^-4	0.863	SYNONYMOUS_CODING Nf1
X	19706610	X_19706610_SNP [dm3] X_19812577_SNP [dm6]	C	T	3.428e^-4	0.863	UPSTREAM skpD INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11899425	X_11899425_SNP [dm3] X_12005392_SNP [dm6]	T	A	3.430e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	814903	3L_814903_SNP [dm3] 3L_814903_SNP [dm6]	A	C	3.441e^-4	0.863	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19793831	2L_19793831_SNP [dm3] 2L_19793831_SNP [dm6]	T	C	3.450e^-4	0.863	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
2L	625467	2L_625467_SNP [dm3] 2L_625467_SNP [dm6]	G	A	3.452e^-4	0.863	UTR_3_PRIME lectin-21Ca UPSTREAM CG2839
2L	14982567	2L_14982567_SNP [dm3] 2L_14982567_SNP [dm6]	T	A	3.453e^-4	0.863	INTRON mol
2R	1249859	2R_1249859_SNP [dm3] 2R_5362354_SNP [dm6]	T	C	3.454e^-4	0.863	NON_SYNONYMOUS_CODING CG10417 UPSTREAM CR42646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	3853655	2L_3853655_SNP [dm3] 2L_3853655_SNP [dm6]	A	T	3.456e^-4	0.863	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6533316	2R_6533316_SNP [dm3] 2R_10645811_SNP [dm6]	A	T	3.461e^-4	0.863	UTR_5_PRIME Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17525560	3R_17525560_SNP [dm3] 3R_21699838_SNP [dm6]	A	G	3.469e^-4	0.863	INTRON CG31176
2R	17932272	2R_17932272_SNP [dm3] 2R_22044767_SNP [dm6]	C	T	3.472e^-4	0.863	INTERGENIC
3L	484080	3L_484080_SNP [dm3] 3L_484080_SNP [dm6]	T	A	3.473e^-4	0.863	INTRON klar
2L	15435019	2L_15435019_SNP [dm3] 2L_15435019_SNP [dm6]	C	T	3.476e^-4	0.863	UTR_3_PRIME CG4161 UPSTREAM CR44861
2L	19742256	2L_19742256_DEL [dm3] 2L_19742256_DEL [dm6]	AG	C	3.477e^-4	0.863	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
3L	802295	3L_802295_DEL [dm3] 3L_802295_DEL [dm6]	TG	T	3.480e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	20131258	2L_20131258_SNP [dm3] 2L_20131258_SNP [dm6]	C	T	3.481e^-4	0.863	INTERGENIC
X	8942358	X_8942358_SNP [dm3] X_9048325_SNP [dm6]	G	T	3.482e^-4	0.863	INTRON CR43836 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6962504	2R_6962504_SNP [dm3] 2R_11074999_SNP [dm6]	G	T	3.483e^-4	0.863	INTRON luna
3L	747175	3L_747175_SNP [dm3] 3L_747175_SNP [dm6]	C	G	3.491e^-4	0.863	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3288034	3L_3288034_SNP [dm3] 3L_3288034_SNP [dm6]	T	C	3.497e^-4	0.863	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
2L	20036590	2L_20036590_DEL [dm3] 2L_20036590_DEL [dm6]	TAAGCTTCCTTCTTCAACAG...	T	3.512e^-4	0.863	INTRON sNPF
3R	14367291	3R_14367291_SNP [dm3] 3R_18541569_SNP [dm6]	C	T	3.518e^-4	0.863	INTRON fru
3L	2026570	3L_2026570_DEL [dm3] 3L_2026570_DEL [dm6]	GTG	G	3.518e^-4	0.863	UPSTREAM CG34259 INTERGENIC
3R	10267700	3R_10267700_SNP [dm3] 3R_14441978_SNP [dm6]	G	A	3.521e^-4	0.863	INTRON cv-c
2L	20426645	2L_20426645_SNP [dm3] 2L_20426645_SNP [dm6]	G	A	3.524e^-4	0.863	UTR_5_PRIME CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14425870	X_14425870_SNP [dm3] X_14531837_SNP [dm6]	A	T	3.524e^-4	0.863	INTERGENIC
3R	27063641	3R_27063641_SNP [dm3] 3R_31237919_SNP [dm6]	T	A	3.532e^-4	0.863	INTRON qless
X	3290722	X_3290722_SNP [dm3] X_3396689_SNP [dm6]	C	G	3.540e^-4	0.863	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15612469	3R_15612469_SNP [dm3] 3R_19786747_SNP [dm6]	A	G	3.544e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11790116	2R_11790116_INS [dm3] 2R_15902611_INS [dm6]	A	ACA	3.544e^-4	0.863	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	5897316	3L_5897316_SNP [dm3] 3L_5904216_SNP [dm6]	A	G	3.547e^-4	0.863	UTR_3_PRIME CG10486 UPSTREAM CG32413
X	1056531	X_1056531_SNP [dm3] X_1162498_SNP [dm6]	T	C	3.549e^-4	0.863	UPSTREAM eIF4E-7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10684817	3R_10684817_SNP [dm3] 3R_14859095_SNP [dm6]	T	G	3.553e^-4	0.863	INTRON btsz
3R	4585578	3R_4585578_SNP [dm3] 3R_8759856_SNP [dm6]	T	C	3.555e^-4	0.863	INTRON CG11768 & 1 other
2L	10891231	2L_10891231_SNP [dm3] 2L_10891231_SNP [dm6]	A	G	3.561e^-4	0.863	INTERGENIC
2L	10891237	2L_10891237_SNP [dm3] 2L_10891237_SNP [dm6]	T	C	3.561e^-4	0.863	INTERGENIC
3R	21030776	3R_21030776_SNP [dm3] 3R_25205054_SNP [dm6]	T	C	3.570e^-4	0.863	INTRON CG13654 & 1 other
3L	21316967	3L_21316967_SNP [dm3] 3L_21323867_SNP [dm6]	T	G	3.577e^-4	0.863	INTRON Rab26
2L	20108321	2L_20108321_SNP [dm3] 2L_20108321_SNP [dm6]	A	T	3.586e^-4	0.863	INTERGENIC	transposable element FlyBase
2R	13579221	2R_13579221_SNP [dm3] 2R_17691716_SNP [dm6]	T	A	3.591e^-4	0.863	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12307162	2L_12307162_SNP [dm3] 2L_12307162_SNP [dm6]	G	T	3.592e^-4	0.863	INTRON aret
3L	10208104	3L_10208104_SNP [dm3] 3L_10215004_SNP [dm6]	C	T	3.598e^-4	0.863	UPSTREAM CG8065 INTERGENIC
3L	8552346	3L_8552346_SNP [dm3] 3L_8559246_SNP [dm6]	T	C	3.600e^-4	0.863	UPSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_Trl
3R	18464166	3R_18464166_SNP [dm3] 3R_22638444_SNP [dm6]	A	G	3.616e^-4	0.863	SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	15544524	3R_15544524_SNP [dm3] 3R_19718802_SNP [dm6]	A	C	3.620e^-4	0.863	INTERGENIC	transposable element FlyBase
3L	8075459	3L_8075459_SNP [dm3] 3L_8082359_SNP [dm6]	A	C	3.628e^-4	0.863	INTRON Ect4 & 1 other	TF binding site mE1_TFBS_HSA
3L	3947732	3L_3947732_SNP [dm3] 3L_3947732_SNP [dm6]	A	G	3.630e^-4	0.863	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
2L	10145574	2L_10145574_SNP [dm3] 2L_10145574_SNP [dm6]	A	T	3.639e^-4	0.863	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
3L	4395843	3L_4395843_SNP [dm3] 3L_4395843_SNP [dm6]	C	T	3.640e^-4	0.863	INTRON slow
2L	20462448	2L_20462448_SNP [dm3] 2L_20462448_SNP [dm6]	G	T	3.643e^-4	0.863	NON_SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	625306	2L_625306_SNP [dm3] 2L_625306_SNP [dm6]	G	A	3.644e^-4	0.863	SYNONYMOUS_CODING lectin-21Ca UPSTREAM CR44798 & 1 other
3L	5887075	3L_5887075_SNP [dm3] 3L_5893975_SNP [dm6]	A	G	3.647e^-4	0.863	INTERGENIC
3R	10416009	3R_10416009_SNP [dm3] 3R_14590287_SNP [dm6]	T	A	3.651e^-4	0.863	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7573572	X_7573572_SNP [dm3] X_7679539_SNP [dm6]	A	T	3.652e^-4	0.863	DOWNSTREAM ct & 1 other EXON CR45667	TF binding site mE1_TFBS_bab1
2R	3812212	2R_3812212_SNP [dm3] 2R_7924707_SNP [dm6]	C	A	3.653e^-4	0.863	INTRON Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	13143959	2L_13143959_SNP [dm3] 2L_13143959_SNP [dm6]	G	A	3.658e^-4	0.863	UPSTREAM CG16978 INTERGENIC
2R	4752709	2R_4752709_SNP [dm3] 2R_8865204_SNP [dm6]	A	T	3.678e^-4	0.863	INTRON RyR
2L	10713381	2L_10713381_SNP [dm3] 2L_10713381_SNP [dm6]	C	T	3.679e^-4	0.863	INTERGENIC
3R	15429289	3R_15429289_SNP [dm3] 3R_19603567_SNP [dm6]	G	T	3.687e^-4	0.863	DOWNSTREAM CG7333 INTRON CG7342
2R	17859402	2R_17859402_SNP [dm3] 2R_21971897_SNP [dm6]	A	G	3.690e^-4	0.863	UPSTREAM CG34029 INTERGENIC
2L	7249194	2L_7249194_SNP [dm3] 2L_7249194_SNP [dm6]	A	T	3.691e^-4	0.863	UTR_5_PRIME Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	16903911	3L_16903911_SNP [dm3] 3L_16910811_SNP [dm6]	T	C	3.696e^-4	0.863	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2R	10634228	2R_10634228_SNP [dm3] 2R_14746723_SNP [dm6]	G	T	3.698e^-4	0.863	UPSTREAM AttA DOWNSTREAM Dro INTERGENIC
3R	6739312	3R_6739312_SNP [dm3] 3R_10913590_SNP [dm6]	C	A	3.700e^-4	0.863	INTERGENIC
3R	21213425	3R_21213425_SNP [dm3] 3R_25387703_SNP [dm6]	A	C	3.700e^-4	0.863	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25517311	3R_25517311_INS [dm3] 3R_29691589_INS [dm6]	C	TAAGCTAAAACAAAAATATT...	3.705e^-4	0.863	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16712119	3L_16712119_SNP [dm3] 3L_16719019_SNP [dm6]	G	A	3.714e^-4	0.863	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_chinmo
3L	4416716	3L_4416716_DEL [dm3] 3L_4416716_DEL [dm6]	GG	A	3.715e^-4	0.863	INTRON DOR
3R	18572219	3R_18572219_SNP [dm3] 3R_22746497_SNP [dm6]	T	A	3.725e^-4	0.863	UTR_3_PRIME HP1c & 1 other UPSTREAM vret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1904112	2L_1904112_SNP [dm3] 2L_1904112_SNP [dm6]	C	A	3.728e^-4	0.863	INTRON CG7337
X	16844855	X_16844855_DEL [dm3] X_16950822_DEL [dm6]	TCTTTGAAAT	T	3.736e^-4	0.863	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3L	12773330	3L_12773330_SNP [dm3] 3L_12780230_SNP [dm6]	G	C	3.741e^-4	0.863	NON_SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
3L	3288534	3L_3288534_SNP [dm3] 3L_3288534_SNP [dm6]	T	A	3.752e^-4	0.863	INTRON CG12017
3R	21815213	3R_21815213_SNP [dm3] 3R_25989491_SNP [dm6]	G	A	3.758e^-4	0.863	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3R	10771958	3R_10771958_SNP [dm3] 3R_14946236_SNP [dm6]	G	A	3.762e^-4	0.863	INTERGENIC
X	13426923	X_13426923_SNP [dm3] X_13532890_SNP [dm6]	G	A	3.764e^-4	0.863	INTERGENIC
2L	4123158	2L_4123158_SNP [dm3] 2L_4123158_SNP [dm6]	C	T	3.764e^-4	0.863	NON_SYNONYMOUS_CODING Sr-CI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1291581	2L_1291581_SNP [dm3] 2L_1291581_SNP [dm6]	T	C	3.764e^-4	0.863	INTRON robo3
3R	24534951	3R_24534951_SNP [dm3] 3R_28709229_SNP [dm6]	G	C	3.765e^-4	0.863	NON_SYNONYMOUS_CODING htt
3R	16650029	3R_16650029_SNP [dm3] 3R_20824307_SNP [dm6]	G	A	3.765e^-4	0.863	UPSTREAM CG17272 DOWNSTREAM RpS20 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10205854	X_10205854_SNP [dm3] X_10311821_SNP [dm6]	T	C	3.773e^-4	0.863	INTRON alpha-Man-I
3R	8045333	3R_8045333_SNP [dm3] 3R_12219611_SNP [dm6]	G	C	3.773e^-4	0.863	UTR_5_PRIME CG4848 DOWNSTREAM CG4860	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	11418974	3L_11418974_SNP [dm3] 3L_11425874_SNP [dm6]	C	G	3.785e^-4	0.864	INTRON CG7560	TF binding site mE1_TFBS_cad
X	10437198	X_10437198_SNP [dm3] X_10543165_SNP [dm6]	T	G	3.788e^-4	0.864	INTRON spri
2R	4524375	2R_4524375_SNP [dm3] 2R_8636870_SNP [dm6]	C	G	3.790e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11899432	X_11899432_INS [dm3] X_12005399_INS [dm6]	A	ATATATATGA	3.799e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1380115	2R_1380115_SNP [dm3] 2R_5492610_SNP [dm6]	A	T	3.809e^-4	0.864	INTRON CG30440	transposable element FlyBase
3R	10186949	3R_10186949_SNP [dm3] 3R_14361227_SNP [dm6]	T	A	3.809e^-4	0.864	UTR_5_PRIME CG31320 INTRON NK7.1
2R	7445896	2R_7445896_SNP [dm3] 2R_11558391_SNP [dm6]	C	A	3.811e^-4	0.864	INTERGENIC
3L	7550203	3L_7550203_SNP [dm3] 3L_7557103_SNP [dm6]	G	T	3.817e^-4	0.864	SYNONYMOUS_CODING CG14837
2R	13579052	2R_13579052_SNP [dm3] 2R_17691547_SNP [dm6]	G	A	3.827e^-4	0.864	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19370107	3L_19370107_SNP [dm3] 3L_19377007_SNP [dm6]	G	A	3.827e^-4	0.864	INTRON CG32206
3R	8874949	3R_8874949_SNP [dm3] 3R_13049227_SNP [dm6]	C	T	3.829e^-4	0.864	UTR_3_PRIME CG31157 DOWNSTREAM CG7966
2R	17600322	2R_17600322_DEL [dm3] 2R_21712817_DEL [dm6]	CAAAATT	A	3.836e^-4	0.864	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15552842	X_15552842_SNP [dm3] X_15658809_SNP [dm6]	T	A	3.844e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	15547020	3R_15547020_SNP [dm3] 3R_19721298_SNP [dm6]	A	C	3.846e^-4	0.864	INTERGENIC
3L	11512649	3L_11512649_SNP [dm3] 3L_11519549_SNP [dm6]	G	T	3.847e^-4	0.864	DOWNSTREAM CG7512 INTRON Fuca
3R	22900816	3R_22900816_SNP [dm3] 3R_27075094_SNP [dm6]	A	T	3.856e^-4	0.865	UPSTREAM CG14257 INTERGENIC
2L	1746451	2L_1746451_INS [dm3] 2L_1746451_INS [dm6]	T	TATTTT	3.867e^-4	0.865	INTRON CG17646
2R	15435800	2R_15435800_SNP [dm3] 2R_19548295_SNP [dm6]	C	A	3.873e^-4	0.865	INTRON sm
2R	6950671	2R_6950671_SNP [dm3] 2R_11063166_SNP [dm6]	C	T	3.879e^-4	0.865	INTRON luna
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	3.892e^-4	0.865	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11842442	2L_11842442_SNP [dm3] 2L_11842442_SNP [dm6]	G	A	3.899e^-4	0.865	UTR_5_PRIME CG44008 UPSTREAM CG14933 & 2 others INTRON Pde1c
2L	14555262	2L_14555262_SNP [dm3] 2L_14555262_SNP [dm6]	T	C	3.910e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	8150415	3L_8150415_SNP [dm3] 3L_8157315_SNP [dm6]	T	A	3.921e^-4	0.865	INTRON CG42445
3L	7348132	3L_7348132_SNP [dm3] 3L_7355032_SNP [dm6]	G	A	3.923e^-4	0.865	SYNONYMOUS_CODING CTCF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9188118	3L_9188118_SNP [dm3] 3L_9195018_SNP [dm6]	C	T	3.925e^-4	0.865	INTERGENIC
X	2326787	X_2326787_SNP [dm3] X_2432754_SNP [dm6]	G	A	3.926e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	4252401	2L_4252401_SNP [dm3] 2L_4252401_SNP [dm6]	T	C	3.929e^-4	0.865	INTERGENIC
2R	11067547	2R_11067547_SNP [dm3] 2R_15180042_SNP [dm6]	C	T	3.931e^-4	0.865	INTRON igl
3L	7729609	3L_7729609_SNP [dm3] 3L_7736509_SNP [dm6]	C	T	3.934e^-4	0.865	SYNONYMOUS_CODING Snmp2 INTRON CG32373
3L	9019063	3L_9019063_SNP [dm3] 3L_9025963_SNP [dm6]	C	T	3.935e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13559085	3R_13559085_SNP [dm3] 3R_17733363_SNP [dm6]	T	C	3.949e^-4	0.865	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	15552592	X_15552592_DEL [dm3] X_15658559_DEL [dm6]	TTAT	T	3.956e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	11484550	3R_11484550_INS [dm3] 3R_15658828_INS [dm6]	A	CCCG	3.963e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8891433	X_8891433_INS [dm3] X_8997400_INS [dm6]	A	AGA	3.963e^-4	0.865	INTRON rdgA & 1 other
2L	16012035	2L_16012035_SNP [dm3] 2L_16012035_SNP [dm6]	A	T	3.967e^-4	0.865	INTRON beat-Ic
3R	25023161	3R_25023161_SNP [dm3] 3R_29197439_SNP [dm6]	T	C	3.977e^-4	0.865	UPSTREAM CG14515 INTERGENIC
2R	3808533	2R_3808533_SNP [dm3] 2R_7921028_SNP [dm6]	C	G	3.984e^-4	0.865	SYNONYMOUS_CODING Or43b UTR_3_PRIME Cul1 DOWNSTREAM Cul1
2R	18004637	2R_18004637_SNP [dm3] 2R_22117132_SNP [dm6]	T	G	3.991e^-4	0.865	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	3003324	X_3003324_SNP [dm3] X_3109291_SNP [dm6]	T	C	3.991e^-4	0.865	INTRON kirre
2R	8904295	2R_8904295_SNP [dm3] 2R_13016790_SNP [dm6]	T	C	3.991e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16147181	3R_16147181_SNP [dm3] 3R_20321459_SNP [dm6]	C	G	3.992e^-4	0.865	INTRON CG42668
2L	5678415	2L_5678415_SNP [dm3] 2L_5678415_SNP [dm6]	A	G	3.998e^-4	0.865	UPSTREAM CG12511 INTERGENIC
2R	2794589	2R_2794589_SNP [dm3] 2R_6907084_SNP [dm6]	C	A	3.998e^-4	0.865	INTRON CG30158	TF binding site mE1_TFBS_chinmo
X	9113971	X_9113971_SNP [dm3] X_9219938_SNP [dm6]	A	T	4.018e^-4	0.865	INTRON t
2L	11283425	2L_11283425_SNP [dm3] 2L_11283425_SNP [dm6]	G	T	4.020e^-4	0.865	NON_SYNONYMOUS_CODING mre11 DOWNSTREAM Osi21	TF binding site mE1_TFBS_cad
3L	16267304	3L_16267304_SNP [dm3] 3L_16274204_SNP [dm6]	G	A	4.024e^-4	0.865	DOWNSTREAM CG13066 INTERGENIC
2L	16055215	2L_16055215_SNP [dm3] 2L_16055215_SNP [dm6]	G	A	4.024e^-4	0.865	INTRON beat-Ia
X	15676196	X_15676196_INS [dm3] X_15782163_INS [dm6]	A	AA	4.026e^-4	0.865	INTRON Efhc1.1
3L	4416371	3L_4416371_SNP [dm3] 3L_4416371_SNP [dm6]	G	A	4.028e^-4	0.865	INTRON DOR
3L	14850865	3L_14850865_SNP [dm3] 3L_14857765_SNP [dm6]	C	A	4.031e^-4	0.865	INTRON CG17839
X	16838350	X_16838350_SNP [dm3] X_16944317_SNP [dm6]	G	T	4.032e^-4	0.865	INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8904403	2R_8904403_SNP [dm3] 2R_13016898_SNP [dm6]	T	A	4.036e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15975713	3L_15975713_SNP [dm3] 3L_15982613_SNP [dm6]	A	T	4.043e^-4	0.865	UTR_5_PRIME brm UPSTREAM Arl1 DOWNSTREAM CG17027 INTRON brm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25394896	3R_25394896_SNP [dm3] 3R_29569174_SNP [dm6]	T	G	4.046e^-4	0.865	INTERGENIC
3R	18145808	3R_18145808_SNP [dm3] 3R_22320086_SNP [dm6]	G	C	4.047e^-4	0.865	INTRON CG34377
3R	18442757	3R_18442757_SNP [dm3] 3R_22617035_SNP [dm6]	A	G	4.048e^-4	0.865	SYNONYMOUS_CODING CG31161 DOWNSTREAM EF-G2
2R	10295389	2R_10295389_SNP [dm3] 2R_14407884_SNP [dm6]	T	G	4.052e^-4	0.865	UPSTREAM CR44369 INTERGENIC
2R	10550613	2R_10550613_SNP [dm3] 2R_14663108_SNP [dm6]	C	T	4.055e^-4	0.865	INTERGENIC
3R	18287288	3R_18287288_SNP [dm3] 3R_22461566_SNP [dm6]	G	C	4.062e^-4	0.865	SYNONYMOUS_CODING Rpn7 UPSTREAM AP-2mu DOWNSTREAM CG34376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	12973015	2R_12973015_SNP [dm3] 2R_17085510_SNP [dm6]	C	T	4.064e^-4	0.865	INTRON CG30460
3L	7712844	3L_7712844_SNP [dm3] 3L_7719744_SNP [dm6]	A	T	4.068e^-4	0.865	INTRON CG32373 & 1 other
3L	18916273	3L_18916273_INS [dm3] 3L_18923173_INS [dm6]	TGG	ACATA	4.075e^-4	0.865	UTR_3_PRIME CG32204
3L	10468530	3L_10468530_SNP [dm3] 3L_10475430_SNP [dm6]	A	C	4.077e^-4	0.865	INTERGENIC
3R	9808806	3R_9808806_DEL [dm3] 3R_13983084_DEL [dm6]	CTC	C	4.079e^-4	0.865	UTR_5_PRIME rdx INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21335763	3R_21335763_SNP [dm3] 3R_25510041_SNP [dm6]	G	T	4.089e^-4	0.865	INTERGENIC
3R	18210618	3R_18210618_SNP [dm3] 3R_22384896_SNP [dm6]	C	T	4.091e^-4	0.865	NON_SYNONYMOUS_CODING CG43343	TF binding site mE1_TFBS_HSA
X	19706609	X_19706609_SNP [dm3] X_19812576_SNP [dm6]	T	A	4.091e^-4	0.865	UPSTREAM skpD INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21236717	3L_21236717_SNP [dm3] 3L_21243617_SNP [dm6]	T	C	4.095e^-4	0.865	INTRON Eip78C
X	7576379	X_7576379_SNP [dm3] X_7682346_SNP [dm6]	A	G	4.111e^-4	0.866	UTR_3_PRIME CHES-1-like
2L	20036378	2L_20036378_SNP [dm3] 2L_20036378_SNP [dm6]	G	C	4.111e^-4	0.866	INTRON sNPF
3R	14031325	3R_14031325_SNP [dm3] 3R_18205603_SNP [dm6]	T	A	4.127e^-4	0.866	INTRON CG7985
3L	21114648	3L_21114648_SNP [dm3] 3L_21121548_SNP [dm6]	T	C	4.128e^-4	0.866	UPSTREAM CG43938 INTRON ko
X	2785303	X_2785303_INS [dm3] X_2891270_INS [dm6]	A	AA	4.135e^-4	0.866	INTRON kirre & 1 other
3R	25517268	3R_25517268_SNP [dm3] 3R_29691546_SNP [dm6]	T	A	4.152e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1100847	3L_1100847_SNP [dm3] 3L_1100847_SNP [dm6]	G	A	4.155e^-4	0.866	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	4.155e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15544473	3R_15544473_SNP [dm3] 3R_19718751_SNP [dm6]	G	A	4.164e^-4	0.866	INTERGENIC
X	7576222	X_7576222_INS [dm3] X_7682189_INS [dm6]	A	AA	4.165e^-4	0.866	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3L	1394090	3L_1394090_SNP [dm3] 3L_1394090_SNP [dm6]	G	A	4.168e^-4	0.866	INTRON Ptp61F
3L	16932029	3L_16932029_SNP [dm3] 3L_16938929_SNP [dm6]	A	C	4.168e^-4	0.866	NON_SYNONYMOUS_CODING CG13022 DOWNSTREAM Cpr73D
3L	9581866	3L_9581866_SNP [dm3] 3L_9588766_SNP [dm6]	C	T	4.171e^-4	0.866	INTRON CG42673
2L	3596467	2L_3596467_SNP [dm3] 2L_3596467_SNP [dm6]	G	C	4.180e^-4	0.866	INTERGENIC
3R	25394902	3R_25394902_SNP [dm3] 3R_29569180_SNP [dm6]	A	G	4.191e^-4	0.866	INTERGENIC
3L	12145976	3L_12145976_SNP [dm3] 3L_12152876_SNP [dm6]	A	G	4.191e^-4	0.866	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10429832	2R_10429832_SNP [dm3] 2R_14542327_SNP [dm6]	G	C	4.195e^-4	0.866	INTRON ttv
3L	18916513	3L_18916513_SNP [dm3] 3L_18923413_SNP [dm6]	T	A	4.205e^-4	0.866	UTR_3_PRIME CG32204
2L	17229983	2L_17229983_SNP [dm3] 2L_17229983_SNP [dm6]	T	C	4.219e^-4	0.866	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10656669	2L_10656669_SNP [dm3] 2L_10656669_SNP [dm6]	G	A	4.228e^-4	0.866	UPSTREAM CR45692 INTERGENIC
2R	17932312	2R_17932312_SNP [dm3] 2R_22044807_SNP [dm6]	G	A	4.231e^-4	0.866	INTERGENIC
2R	17600339	2R_17600339_SNP [dm3] 2R_21712834_SNP [dm6]	G	A	4.237e^-4	0.866	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	20716385	3L_20716385_SNP [dm3] 3L_20723285_SNP [dm6]	A	T	4.241e^-4	0.866	INTERGENIC
2R	14444924	2R_14444924_SNP [dm3] 2R_18557419_SNP [dm6]	A	G	4.243e^-4	0.866	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2R	4684148	2R_4684148_SNP [dm3] 2R_8796643_SNP [dm6]	T	A	4.243e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	4349445	3L_4349445_SNP [dm3] 3L_4349445_SNP [dm6]	G	A	4.247e^-4	0.866	INTRON Cip4
X	8835345	X_8835345_SNP [dm3] X_8941312_SNP [dm6]	A	G	4.252e^-4	0.866	INTRON rdgA
2L	8248531	2L_8248531_SNP [dm3] 2L_8248531_SNP [dm6]	A	G	4.256e^-4	0.866	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo
3L	15983093	3L_15983093_INS [dm3] 3L_15989993_INS [dm6]	T	TACCCATTCTGGGTACCTTG...	4.257e^-4	0.866		TF binding site mE1_TFBS_cad
2L	1131518	2L_1131518_SNP [dm3] 2L_1131518_SNP [dm6]	C	T	4.259e^-4	0.866	SYNONYMOUS_CODING CG4552 DOWNSTREAM Iris	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8904292	2R_8904292_SNP [dm3] 2R_13016787_SNP [dm6]	G	A	4.266e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3853704	2L_3853704_DEL [dm3] 2L_3853704_DEL [dm6]	AA	C	4.275e^-4	0.866	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20442881	X_20442881_SNP [dm3] X_20571854_SNP [dm6]	C	T	4.280e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16649958	3R_16649958_SNP [dm3] 3R_20824236_SNP [dm6]	A	G	4.281e^-4	0.866	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10666968	3R_10666968_SNP [dm3] 3R_14841246_SNP [dm6]	C	T	4.287e^-4	0.866	INTRON btsz
X	2755258	X_2755258_SNP [dm3] X_2861225_SNP [dm6]	T	C	4.289e^-4	0.866	INTRON kirre
2L	20087323	2L_20087323_SNP [dm3] 2L_20087323_SNP [dm6]	G	A	4.290e^-4	0.866	INTRON neb
2L	13921888	2L_13921888_SNP [dm3] 2L_13921888_SNP [dm6]	T	C	4.292e^-4	0.866	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4629831	2L_4629831_SNP [dm3] 2L_4629831_SNP [dm6]	T	C	4.295e^-4	0.866	INTERGENIC
X	2325885	X_2325885_SNP [dm3] X_2431852_SNP [dm6]	T	C	4.296e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	2087929	X_2087929_SNP [dm3] X_2193896_SNP [dm6]	A	T	4.299e^-4	0.866	UTR_5_PRIME CG14053 UPSTREAM CG14053 & 1 other INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	22900835	3R_22900835_SNP [dm3] 3R_27075113_SNP [dm6]	G	A	4.299e^-4	0.866	UPSTREAM CG14257 INTERGENIC
2L	18372310	2L_18372310_SNP [dm3] 2L_18372310_SNP [dm6]	C	T	4.300e^-4	0.866	INTRON Fas3
2R	4763838	2R_4763838_SNP [dm3] 2R_8876333_SNP [dm6]	C	A	4.314e^-4	0.866	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17566018	3R_17566018_SNP [dm3] 3R_21740296_SNP [dm6]	C	T	4.319e^-4	0.866	SYNONYMOUS_CODING CG5849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	480616	3L_480616_SNP [dm3] 3L_480616_SNP [dm6]	G	A	4.326e^-4	0.866	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18766501	2R_18766501_SNP [dm3] 2R_22878978_SNP [dm6]	G	C	4.327e^-4	0.866	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
3L	11674843	3L_11674843_SNP [dm3] 3L_11681743_SNP [dm6]	T	A	4.328e^-4	0.866	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6448566	X_6448566_SNP [dm3] X_6554533_SNP [dm6]	T	C	4.332e^-4	0.866	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3R	10699278	3R_10699278_SNP [dm3] 3R_14873556_SNP [dm6]	A	C	4.334e^-4	0.866	UPSTREAM btsz INTRON btsz
3R	23044841	3R_23044841_SNP [dm3] 3R_27219119_SNP [dm6]	G	A	4.339e^-4	0.866	UPSTREAM CR34006 INTERGENIC
3L	7890212	3L_7890212_SNP [dm3] 3L_7897112_SNP [dm6]	G	A	4.349e^-4	0.866	INTRON pbl
2R	12065514	2R_12065514_SNP [dm3] 2R_16178009_SNP [dm6]	T	C	4.360e^-4	0.866	UPSTREAM Lis-1 INTRON Ptp52F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15676143	X_15676143_SNP [dm3] X_15782110_SNP [dm6]	G	A	4.362e^-4	0.866	INTRON Efhc1.1
3R	8123130	3R_8123130_SNP [dm3] 3R_12297408_SNP [dm6]	G	A	4.364e^-4	0.866	INTRON svp	TF binding site mE1_TFBS_cad
3L	3289231	3L_3289231_SNP [dm3] 3L_3289231_SNP [dm6]	T	G	4.375e^-4	0.866	INTRON CG12017
3L	11695123	3L_11695123_SNP [dm3] 3L_11702023_SNP [dm6]	C	A	4.379e^-4	0.866	INTRON CG11658
2L	4740262	2L_4740262_SNP [dm3] 2L_4740262_SNP [dm6]	A	T	4.381e^-4	0.866	INTRON CG15630	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18732653	3L_18732653_SNP [dm3] 3L_18739553_SNP [dm6]	C	A	4.384e^-4	0.866	INTERGENIC
2L	3853659	2L_3853659_SNP [dm3] 2L_3853659_SNP [dm6]	A	G	4.387e^-4	0.866	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3853679	2L_3853679_SNP [dm3] 2L_3853679_SNP [dm6]	C	A	4.387e^-4	0.866	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16732269	2R_16732269_SNP [dm3] 2R_20844764_SNP [dm6]	T	A	4.397e^-4	0.867	INTERGENIC
3L	6495106	3L_6495106_SNP [dm3] 3L_6502006_SNP [dm6]	C	G	4.402e^-4	0.867	INTRON sfl
2L	16011977	2L_16011977_DEL [dm3] 2L_16011977_DEL [dm6]	TTAC	T	4.405e^-4	0.867	INTRON beat-Ic
2R	4519324	2R_4519324_SNP [dm3] 2R_8631819_SNP [dm6]	T	G	4.413e^-4	0.868	UTR_5_PRIME CG8635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6969629	2R_6969629_INS [dm3] 2R_11082124_INS [dm6]	A	AGGCA	4.425e^-4	0.869	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19355508	3R_19355508_SNP [dm3] 3R_23529786_SNP [dm6]	G	A	4.428e^-4	0.869	UPSTREAM CG10175 INTRON CG10175
2L	11459477	2L_11459477_SNP [dm3] 2L_11459477_SNP [dm6]	C	T	4.432e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14487141	3L_14487141_SNP [dm3] 3L_14494041_SNP [dm6]	G	A	4.455e^-4	0.871	INTRON bbg
2R	15435892	2R_15435892_SNP [dm3] 2R_19548387_SNP [dm6]	T	C	4.458e^-4	0.871	INTRON sm
2R	17866759	2R_17866759_SNP [dm3] 2R_21979254_SNP [dm6]	T	G	4.474e^-4	0.871	NON_SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10576067	3R_10576067_SNP [dm3] 3R_14750345_SNP [dm6]	G	C	4.481e^-4	0.871	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	2257043	2L_2257043_MNP [dm3] 2L_2257043_MNP [dm6]	TAA	GGC	4.485e^-4	0.871	DOWNSTREAM CR44787 INTERGENIC
2L	4721984	2L_4721984_SNP [dm3] 2L_4721984_SNP [dm6]	C	T	4.486e^-4	0.871	UTR_3_PRIME CG34351
3R	24156335	3R_24156335_SNP [dm3] 3R_28330613_SNP [dm6]	T	C	4.487e^-4	0.871	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8573066	2L_8573066_SNP [dm3] 2L_8573066_SNP [dm6]	A	G	4.495e^-4	0.871	INTRON Sema-1a
2R	10507560	2R_10507560_SNP [dm3] 2R_14620055_SNP [dm6]	T	C	4.502e^-4	0.871	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4377211	2R_4377211_SNP [dm3] 2R_8489706_SNP [dm6]	A	T	4.505e^-4	0.871	INTRON mtt
3L	21922645	3L_21922645_SNP [dm3] 3L_21929545_SNP [dm6]	C	T	4.508e^-4	0.871	UTR_3_PRIME mub
3L	12724342	3L_12724342_SNP [dm3] 3L_12731242_SNP [dm6]	T	C	4.513e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12724811	3L_12724811_SNP [dm3] 3L_12731711_SNP [dm6]	T	C	4.514e^-4	0.871	INTERGENIC
2R	18004900	2R_18004900_SNP [dm3] 2R_22117395_SNP [dm6]	G	T	4.515e^-4	0.871	INTRON Vrp1
2L	9179562	2L_9179562_SNP [dm3] 2L_9179562_SNP [dm6]	C	G	4.520e^-4	0.871	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14114160	3L_14114160_SNP [dm3] 3L_14121060_SNP [dm6]	T	C	4.528e^-4	0.871	INTRON Sox21b
3R	17972746	3R_17972746_SNP [dm3] 3R_22147024_SNP [dm6]	A	T	4.529e^-4	0.871	INTRON SKIP	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	10419106	3R_10419106_SNP [dm3] 3R_14593384_SNP [dm6]	G	A	4.538e^-4	0.871	INTRON stumps	TF binding site mE1_TFBS_cad
3R	5265870	3R_5265870_DEL [dm3] 3R_9440148_DEL [dm6]	CC	G	4.546e^-4	0.871	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1096847	3L_1096847_SNP [dm3] 3L_1096847_SNP [dm6]	G	A	4.549e^-4	0.871	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15028550	3R_15028550_DEL [dm3] 3R_19202828_DEL [dm6]	CTCGT	C	4.553e^-4	0.871	INTERGENIC
3L	4395192	3L_4395192_SNP [dm3] 3L_4395192_SNP [dm6]	T	A	4.556e^-4	0.871	INTRON slow
2L	20124840	2L_20124840_SNP [dm3] 2L_20124840_SNP [dm6]	A	G	4.558e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15001584	3R_15001584_SNP [dm3] 3R_19175862_SNP [dm6]	A	G	4.561e^-4	0.871	INTERGENIC
3L	12613760	3L_12613760_SNP [dm3] 3L_12620660_SNP [dm6]	A	G	4.561e^-4	0.871	NON_SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21073346	3R_21073346_SNP [dm3] 3R_25247624_SNP [dm6]	C	G	4.565e^-4	0.871	UPSTREAM Nup37 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15613355	3R_15613355_SNP [dm3] 3R_19787633_SNP [dm6]	A	C	4.570e^-4	0.871	INTERGENIC
3R	13317693	3R_13317693_SNP [dm3] 3R_17491971_SNP [dm6]	T	C	4.581e^-4	0.871	INTRON Dscam3
X	7363374	X_7363374_SNP [dm3] X_7469341_SNP [dm6]	C	T	4.581e^-4	0.871	INTERGENIC
3L	12543568	3L_12543568_SNP [dm3] 3L_12550468_SNP [dm6]	A	T	4.582e^-4	0.871	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16595602	3R_16595602_SNP [dm3] 3R_20769880_SNP [dm6]	A	G	4.595e^-4	0.872	DOWNSTREAM Takl1 INTRON Syp
2R	18166365	2R_18166365_SNP [dm3] 2R_22278860_SNP [dm6]	C	T	4.608e^-4	0.873	INTRON dve
2R	17987191	2R_17987191_SNP [dm3] 2R_22099686_SNP [dm6]	T	C	4.612e^-4	0.873	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4393428	3L_4393428_SNP [dm3] 3L_4393428_SNP [dm6]	C	A	4.613e^-4	0.873	INTRON slow
X	3937050	X_3937050_SNP [dm3] X_4043017_SNP [dm6]	G	A	4.636e^-4	0.874	INTERGENIC
X	5271600	X_5271600_SNP [dm3] X_5377567_SNP [dm6]	G	A	4.656e^-4	0.874	INTRON SK	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12772010	3L_12772010_SNP [dm3] 3L_12778910_SNP [dm6]	T	A	4.656e^-4	0.874	UTR_3_PRIME CG10969 UPSTREAM CG32106
X	16825825	X_16825825_SNP [dm3] X_16931792_SNP [dm6]	A	C	4.664e^-4	0.874	INTRON CG4928
2R	7198848	2R_7198848_SNP [dm3] 2R_11311343_SNP [dm6]	A	G	4.667e^-4	0.874	SYNONYMOUS_CODING nompA DOWNSTREAM CG43114	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14645433	2R_14645433_SNP [dm3] 2R_18757928_SNP [dm6]	A	G	4.676e^-4	0.874	NON_SYNONYMOUS_CODING Jabba SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2L	15439252	2L_15439252_SNP [dm3] 2L_15439252_SNP [dm6]	G	T	4.676e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	18386531	2L_18386531_SNP [dm3] 2L_18386531_SNP [dm6]	G	A	4.680e^-4	0.874	UTR_3_PRIME Fas3 INTRON Fas3
2R	18738676	2R_18738676_SNP [dm3] 2R_22851153_SNP [dm6]	T	C	4.682e^-4	0.874	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
3L	10599035	3L_10599035_SNP [dm3] 3L_10605935_SNP [dm6]	C	T	4.686e^-4	0.874	INTERGENIC
3R	8038282	3R_8038282_SNP [dm3] 3R_12212560_SNP [dm6]	A	T	4.690e^-4	0.874	INTERGENIC	transposable element FlyBase
2L	13916204	2L_13916204_INS [dm3] 2L_13916204_INS [dm6]	C	TG	4.712e^-4	0.874	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
3L	4929861	3L_4929861_SNP [dm3] 3L_4929861_SNP [dm6]	C	G	4.712e^-4	0.874	DOWNSTREAM CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	3959040	3L_3959040_SNP [dm3] 3L_3959040_SNP [dm6]	G	A	4.720e^-4	0.874	SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results