DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.115e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2162 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13883106	3L_13883106_SNP [dm3] 3L_13890006_SNP [dm6]	A	T	8.163e^-7	0.866	INTRON dysc
3L	12641204	3L_12641204_DEL [dm3] 3L_12648104_DEL [dm6]	TT	T	1.220e^-6	0.866	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13277556	3L_13277556_SNP [dm3] 3L_13284456_SNP [dm6]	T	A	5.227e^-6	0.866	DOWNSTREAM CR45752 EXON CR43913
2R	4068556	2R_4068556_SNP [dm3] 2R_8181051_SNP [dm6]	C	T	6.002e^-6	0.866	INTRON LRP1
3L	8993631	3L_8993631_SNP [dm3] 3L_9000531_SNP [dm6]	A	T	6.073e^-6	0.866	INTRON CG5087
3L	17848047	3L_17848047_SNP [dm3] 3L_17854947_SNP [dm6]	G	T	8.482e^-6	0.866	INTRON CG5535	TF binding site mE1_TFBS_HSA
3R	14560988	3R_14560988_SNP [dm3] 3R_18735266_SNP [dm6]	T	C	8.585e^-6	0.866	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad
3R	5118268	3R_5118268_SNP [dm3] 3R_9292546_SNP [dm6]	A	T	1.012e^-5	0.866	INTERGENIC
2R	12577928	2R_12577928_SNP [dm3] 2R_16690423_SNP [dm6]	A	T	1.143e^-5	0.866	UPSTREAM CG5210 INTRON CG30463
2R	8733169	2R_8733169_SNP [dm3] 2R_12845664_SNP [dm6]	A	G	1.173e^-5	0.866	SYNONYMOUS_CODING CG17575 DOWNSTREAM Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20126550	2L_20126550_DEL [dm3] 2L_20126550_DEL [dm6]	CAAAATGGTGTAGC...	C	1.339e^-5	0.866	INTERGENIC
3R	5118235	3R_5118235_SNP [dm3] 3R_9292513_SNP [dm6]	T	C	1.374e^-5	0.866	INTERGENIC
3R	15566725	3R_15566725_SNP [dm3] 3R_19741003_SNP [dm6]	A	G	1.382e^-5	0.866	INTRON GluClalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	1.387e^-5	0.866	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
X	3482356	X_3482356_SNP [dm3] X_3588323_SNP [dm6]	G	C	1.404e^-5	0.866	INTRON AstA-R1
2R	12577927	2R_12577927_SNP [dm3] 2R_16690422_SNP [dm6]	C	T	1.480e^-5	0.866	UPSTREAM CG5210 INTRON CG30463
2R	8007438	2R_8007438_SNP [dm3] 2R_12119933_SNP [dm6]	A	G	1.525e^-5	0.866	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7369138	2R_7369138_SNP [dm3] 2R_11481633_SNP [dm6]	T	G	1.701e^-5	0.866	INTRON inv
2L	16609427	2L_16609427_SNP [dm3] 2L_16609427_SNP [dm6]	T	G	1.746e^-5	0.866	SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	13184451	3L_13184451_SNP [dm3] 3L_13191351_SNP [dm6]	A	G	1.758e^-5	0.866	INTERGENIC
2R	18074268	2R_18074268_SNP [dm3] 2R_22186763_SNP [dm6]	C	T	1.760e^-5	0.866	SPLICE_SITE_REGION Vps35 DOWNSTREAM MED16 INTRON Vps35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17836055	3L_17836055_SNP [dm3] 3L_17842955_SNP [dm6]	A	G	1.768e^-5	0.866	DOWNSTREAM CR45175 & 1 other INTRON CG5567
3L	13207434	3L_13207434_SNP [dm3] 3L_13214334_SNP [dm6]	A	T	1.894e^-5	0.866	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14559283	3R_14559283_SNP [dm3] 3R_18733561_SNP [dm6]	C	A	1.922e^-5	0.866	SYNONYMOUS_CODING Mekk1 DOWNSTREAM CG14302	TF binding site mE1_TFBS_chinmo
2R	8733032	2R_8733032_INS [dm3] 2R_12845527_INS [dm6]	A	ATT	1.925e^-5	0.866	DOWNSTREAM CG17575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9647455	3L_9647455_SNP [dm3] 3L_9654355_SNP [dm6]	C	T	1.937e^-5	0.866	INTRON fry & 1 other
2L	4969233	2L_4969233_SNP [dm3] 2L_4969233_SNP [dm6]	C	T	1.955e^-5	0.866	UPSTREAM Scox DOWNSTREAM l_2_05714 INTRON CG3756	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	17840685	3L_17840685_SNP [dm3] 3L_17847585_SNP [dm6]	C	A	2.026e^-5	0.866	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12641209	3L_12641209_SNP [dm3] 3L_12648109_SNP [dm6]	T	G	2.029e^-5	0.866	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12862379	X_12862379_SNP [dm3] X_12968346_SNP [dm6]	C	T	2.032e^-5	0.866	NON_SYNONYMOUS_CODING Mur11Da
3L	12525958	3L_12525958_SNP [dm3] 3L_12532858_SNP [dm6]	T	C	2.071e^-5	0.866	SYNONYMOUS_CODING Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	7369159	2R_7369159_SNP [dm3] 2R_11481654_SNP [dm6]	G	C	2.202e^-5	0.866	INTRON inv
2L	8720582	2L_8720582_SNP [dm3] 2L_8720582_SNP [dm6]	T	G	2.295e^-5	0.866	INTRON raw
3L	3842551	3L_3842551_SNP [dm3] 3L_3842551_SNP [dm6]	T	C	2.361e^-5	0.866	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5130321	2R_5130321_SNP [dm3] 2R_9242816_SNP [dm6]	G	A	2.381e^-5	0.866	SYNONYMOUS_CODING Cyp4p3 DOWNSTREAM Cyp4p1 INTRON hig
3L	20780981	3L_20780981_SNP [dm3] 3L_20787881_SNP [dm6]	G	T	2.440e^-5	0.866	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	11024955	2R_11024955_SNP [dm3] 2R_15137450_SNP [dm6]	C	T	2.442e^-5	0.866	INTRON chn	TF binding site mE1_TFBS_inv
3L	14512745	3L_14512745_SNP [dm3] 3L_14519645_SNP [dm6]	G	T	2.459e^-5	0.866	DOWNSTREAM CG4613 INTRON bbg
2R	12266130	2R_12266130_SNP [dm3] 2R_16378625_SNP [dm6]	A	G	2.535e^-5	0.866	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
X	3481763	X_3481763_SNP [dm3] X_3587730_SNP [dm6]	C	G	2.709e^-5	0.866	INTRON AstA-R1
3R	15116874	3R_15116874_SNP [dm3] 3R_19291152_SNP [dm6]	C	G	2.709e^-5	0.866	INTERGENIC
3R	15116883	3R_15116883_SNP [dm3] 3R_19291161_SNP [dm6]	G	A	2.730e^-5	0.866	INTERGENIC
2R	8760056	2R_8760056_SNP [dm3] 2R_12872551_SNP [dm6]	G	A	2.763e^-5	0.866	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12265994	2R_12265994_SNP [dm3] 2R_16378489_SNP [dm6]	A	C	2.854e^-5	0.866	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
3L	13207633	3L_13207633_SNP [dm3] 3L_13214533_SNP [dm6]	A	T	2.981e^-5	0.866	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17835682	3L_17835682_SNP [dm3] 3L_17842582_SNP [dm6]	T	A	3.056e^-5	0.866	INTRON CG5567 EXON CR45175
3R	15562185	3R_15562185_SNP [dm3] 3R_19736463_SNP [dm6]	G	T	3.106e^-5	0.866	INTRON GluClalpha
3R	14557301	3R_14557301_SNP [dm3] 3R_18731579_SNP [dm6]	C	T	3.111e^-5	0.866	UTR_3_PRIME Cha DOWNSTREAM Cha
2L	551691	2L_551691_SNP [dm3] 2L_551691_SNP [dm6]	G	T	3.170e^-5	0.866	NON_SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14256920	3R_14256920_SNP [dm3] 3R_18431198_SNP [dm6]	C	G	3.184e^-5	0.866	DOWNSTREAM fru INTRON fru
3L	17835680	3L_17835680_SNP [dm3] 3L_17842580_SNP [dm6]	T	G	3.234e^-5	0.866	INTRON CG5567 EXON CR45175
2R	18074274	2R_18074274_SNP [dm3] 2R_22186769_SNP [dm6]	C	T	3.269e^-5	0.866	SPLICE_SITE_REGION Vps35 SYNONYMOUS_CODING Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13539924	2L_13539924_SNP [dm3] 2L_13539924_SNP [dm6]	T	C	3.282e^-5	0.866	UPSTREAM CG16852 INTRON B4
2L	3446484	2L_3446484_SNP [dm3] 2L_3446484_SNP [dm6]	G	T	3.354e^-5	0.866	NON_SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13206226	3L_13206226_SNP [dm3] 3L_13213126_SNP [dm6]	T	C	3.422e^-5	0.866	UPSTREAM tRNA:CR32127 DOWNSTREAM tRNA:CR32126 INTERGENIC
3R	18155172	3R_18155172_SNP [dm3] 3R_22329450_SNP [dm6]	A	C	3.479e^-5	0.866	INTRON CG7080	TF binding site mE1_TFBS_cad
3R	18155177	3R_18155177_SNP [dm3] 3R_22329455_SNP [dm6]	C	T	3.479e^-5	0.866	INTRON CG7080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10205268	2R_10205268_SNP [dm3] 2R_14317763_SNP [dm6]	C	T	3.507e^-5	0.866	INTRON Shroom
3L	13207655	3L_13207655_SNP [dm3] 3L_13214555_SNP [dm6]	A	G	3.569e^-5	0.866	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5862859	3R_5862859_SNP [dm3] 3R_10037137_SNP [dm6]	A	G	3.573e^-5	0.866	INTRON Mical
2R	18748479	2R_18748479_SNP [dm3] 2R_22860956_SNP [dm6]	C	T	3.607e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11024907	2R_11024907_SNP [dm3] 2R_15137402_SNP [dm6]	T	G	3.671e^-5	0.866	INTRON chn	TF binding site mE1_TFBS_inv
3L	12641214	3L_12641214_SNP [dm3] 3L_12648114_SNP [dm6]	C	T	3.682e^-5	0.866	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18748480	2R_18748480_SNP [dm3] 2R_22860957_SNP [dm6]	T	A	3.729e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18748481	2R_18748481_INS [dm3] 2R_22860958_INS [dm6]	T	TATATA	3.729e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10540924	2L_10540924_DEL [dm3] 2L_10540924_DEL [dm6]	CATCTCTGCCACCCAAAAGT...	A	3.742e^-5	0.866	INTERGENIC
3L	17834574	3L_17834574_SNP [dm3] 3L_17841474_SNP [dm6]	A	G	3.825e^-5	0.866	UPSTREAM CR45175 & 1 other DOWNSTREAM CG5567 INTERGENIC
2L	17613796	2L_17613796_SNP [dm3] 2L_17613796_SNP [dm6]	G	C	4.146e^-5	0.866	INTERGENIC
3L	13207665	3L_13207665_SNP [dm3] 3L_13214565_SNP [dm6]	G	A	4.164e^-5	0.866	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1893128	2L_1893128_SNP [dm3] 2L_1893128_SNP [dm6]	G	C	4.165e^-5	0.866	INTRON CG7337
X	5005160	X_5005160_SNP [dm3] X_5111127_SNP [dm6]	C	G	4.237e^-5	0.866	INTRON rg & 1 other
3R	5348342	3R_5348342_SNP [dm3] 3R_9522620_SNP [dm6]	A	G	4.261e^-5	0.866	SYNONYMOUS_CODING CG8176
3R	18155170	3R_18155170_SNP [dm3] 3R_22329448_SNP [dm6]	T	C	4.296e^-5	0.866	INTRON CG7080	TF binding site mE1_TFBS_cad
2R	11024935	2R_11024935_SNP [dm3] 2R_15137430_SNP [dm6]	G	C	4.373e^-5	0.866	INTRON chn	TF binding site mE1_TFBS_inv
3R	5321156	3R_5321156_SNP [dm3] 3R_9495434_SNP [dm6]	G	T	4.387e^-5	0.866	SYNONYMOUS_CODING CG8147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27226467	3R_27226467_SNP [dm3] 3R_31400745_SNP [dm6]	A	G	4.390e^-5	0.866	SYNONYMOUS_CODING Gcn2 DOWNSTREAM CG11337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	551692	2L_551692_SNP [dm3] 2L_551692_SNP [dm6]	T	C	4.455e^-5	0.866	NON_SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19255810	3L_19255810_SNP [dm3] 3L_19262710_SNP [dm6]	T	C	4.484e^-5	0.866	UTR_3_PRIME Max DOWNSTREAM Bet1	TF binding site mE1_TFBS_cad
2L	371772	2L_371772_SNP [dm3] 2L_371772_SNP [dm6]	T	G	4.489e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16551173	3L_16551173_SNP [dm3] 3L_16558073_SNP [dm6]	A	G	4.543e^-5	0.866	DOWNSTREAM CG4229 INTERGENIC
2L	5268825	2L_5268825_SNP [dm3] 2L_5268825_SNP [dm6]	G	A	4.570e^-5	0.866	SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
3L	13206924	3L_13206924_SNP [dm3] 3L_13213824_SNP [dm6]	A	G	4.689e^-5	0.866	UPSTREAM tRNA:CR32127 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1893110	2L_1893110_SNP [dm3] 2L_1893110_SNP [dm6]	C	T	4.748e^-5	0.866	INTRON CG7337
2L	7063939	2L_7063939_SNP [dm3] 2L_7063939_SNP [dm6]	G	A	4.755e^-5	0.866	UPSTREAM Sem1 DOWNSTREAM Nuf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	17835669	3L_17835669_SNP [dm3] 3L_17842569_SNP [dm6]	A	G	4.786e^-5	0.866	INTRON CG5567 EXON CR45175
3L	17835676	3L_17835676_SNP [dm3] 3L_17842576_SNP [dm6]	T	A	4.786e^-5	0.866	INTRON CG5567 EXON CR45175
3R	5332065	3R_5332065_SNP [dm3] 3R_9506343_SNP [dm6]	G	A	4.839e^-5	0.866	SYNONYMOUS_CODING rump UTR_3_PRIME rump DOWNSTREAM CG8149
3L	17874501	3L_17874501_SNP [dm3] 3L_17881401_SNP [dm6]	T	C	4.972e^-5	0.866	SYNONYMOUS_CODING CG7408
2R	4326241	2R_4326241_INS [dm3] 2R_8438736_INS [dm6]	A	AA	5.029e^-5	0.866	DOWNSTREAM Lcp4 & 1 other INTERGENIC
2L	5268777	2L_5268777_SNP [dm3] 2L_5268777_SNP [dm6]	A	C	5.082e^-5	0.866	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3R	5862858	3R_5862858_SNP [dm3] 3R_10037136_SNP [dm6]	A	T	5.082e^-5	0.866	INTRON Mical
2L	7411527	2L_7411527_SNP [dm3] 2L_7411527_SNP [dm6]	C	A	5.194e^-5	0.866	SYNONYMOUS_CODING CG15818 UPSTREAM chm	TF binding site BDTNP1_TFBS_dl
3L	17871483	3L_17871483_SNP [dm3] 3L_17878383_SNP [dm6]	C	A	5.198e^-5	0.866	UPSTREAM CG7408 INTERGENIC
2R	5131848	2R_5131848_SNP [dm3] 2R_9244343_SNP [dm6]	C	A	5.201e^-5	0.866	UTR_3_PRIME Cyp4p3 INTRON hig
2R	16053352	2R_16053352_SNP [dm3] 2R_20165847_SNP [dm6]	C	T	5.224e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5268843	2L_5268843_SNP [dm3] 2L_5268843_SNP [dm6]	T	A	5.275e^-5	0.866	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
3L	13185081	3L_13185081_SNP [dm3] 3L_13191981_SNP [dm6]	T	C	5.322e^-5	0.866	INTERGENIC
3L	17835684	3L_17835684_SNP [dm3] 3L_17842584_SNP [dm6]	G	T	5.372e^-5	0.866	INTRON CG5567 EXON CR45175
3R	5399431	3R_5399431_SNP [dm3] 3R_9573709_SNP [dm6]	G	A	5.453e^-5	0.866	UPSTREAM CG9399 DOWNSTREAM Kap-alpha3 INTRON CG9399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	5407285	X_5407285_SNP [dm3] X_5513252_SNP [dm6]	G	A	5.486e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	19804949	3R_19804949_SNP [dm3] 3R_23979227_SNP [dm6]	C	T	5.622e^-5	0.866	SYNONYMOUS_CODING CG31140
3R	15561271	3R_15561271_SNP [dm3] 3R_19735549_SNP [dm6]	A	G	5.662e^-5	0.866	INTRON GluClalpha
3R	14256752	3R_14256752_DEL [dm3] 3R_18431030_DEL [dm6]	TT	T	5.684e^-5	0.866	DOWNSTREAM fru INTRON fru
X	14652299	X_14652299_SNP [dm3] X_14758266_SNP [dm6]	C	T	5.798e^-5	0.866	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
2R	17717257	2R_17717257_SNP [dm3] 2R_21829752_SNP [dm6]	A	T	5.857e^-5	0.866	NON_SYNONYMOUS_CODING CG13492
X	21045260	X_21045260_SNP [dm3] X_21174233_SNP [dm6]	A	C	5.875e^-5	0.866	INTERGENIC	transposable element FlyBase
3L	6932874	3L_6932874_SNP [dm3] 3L_6939774_SNP [dm6]	G	A	5.977e^-5	0.866	UPSTREAM CR45412 INTERGENIC
2R	9256569	2R_9256569_SNP [dm3] 2R_13369064_SNP [dm6]	A	T	6.014e^-5	0.866	INTERGENIC
X	13195456	X_13195456_SNP [dm3] X_13301423_SNP [dm6]	A	C	6.091e^-5	0.866	INTRON CG1764
2R	4451556	2R_4451556_SNP [dm3] 2R_8564051_SNP [dm6]	A	G	6.175e^-5	0.866	DOWNSTREAM Cyp6a14 INTERGENIC
2R	17805766	2R_17805766_SNP [dm3] 2R_21918261_SNP [dm6]	C	A	6.208e^-5	0.866	INTRON Fili
2R	18748474	2R_18748474_SNP [dm3] 2R_22860951_SNP [dm6]	A	G	6.231e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3842479	3L_3842479_SNP [dm3] 3L_3842479_SNP [dm6]	G	A	6.304e^-5	0.866	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10541130	2L_10541130_SNP [dm3] 2L_10541130_SNP [dm6]	G	T	6.473e^-5	0.866	INTERGENIC
3R	5862850	3R_5862850_SNP [dm3] 3R_10037128_SNP [dm6]	G	T	6.523e^-5	0.866	INTRON Mical
3R	5376707	3R_5376707_SNP [dm3] 3R_9550985_SNP [dm6]	C	G	6.525e^-5	0.866	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	25332470	3R_25332470_SNP [dm3] 3R_29506748_SNP [dm6]	A	G	6.591e^-5	0.866	INTERGENIC
3L	14512744	3L_14512744_SNP [dm3] 3L_14519644_SNP [dm6]	T	G	6.635e^-5	0.866	DOWNSTREAM CG4613 INTRON bbg
2L	11595229	2L_11595229_SNP [dm3] 2L_11595229_SNP [dm6]	G	A	6.637e^-5	0.866	INTRON kek2
3R	8394127	3R_8394127_SNP [dm3] 3R_12568405_SNP [dm6]	G	A	6.706e^-5	0.866	INTRON Octbeta2R
3L	18173487	3L_18173487_SNP [dm3] 3L_18180387_SNP [dm6]	G	A	6.753e^-5	0.866	INTRON W
2R	11873237	2R_11873237_SNP [dm3] 2R_15985732_SNP [dm6]	A	G	6.793e^-5	0.866	SYNONYMOUS_CODING Strn-Mlck
3R	9639505	3R_9639505_SNP [dm3] 3R_13813783_SNP [dm6]	G	A	6.795e^-5	0.866	UTR_5_PRIME tal-AA UTR_3_PRIME tal-1A & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14512699	3L_14512699_SNP [dm3] 3L_14519599_SNP [dm6]	G	A	6.882e^-5	0.866	DOWNSTREAM CG4613 INTRON bbg
2R	12244458	2R_12244458_SNP [dm3] 2R_16356953_SNP [dm6]	G	A	6.916e^-5	0.866	UPSTREAM CR43416 INTERGENIC
2L	4032198	2L_4032198_SNP [dm3] 2L_4032198_SNP [dm6]	A	G	6.936e^-5	0.866	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20126530	2L_20126530_SNP [dm3] 2L_20126530_SNP [dm6]	G	A	6.943e^-5	0.866	INTERGENIC
3L	17849288	3L_17849288_SNP [dm3] 3L_17856188_SNP [dm6]	C	T	6.951e^-5	0.866	UPSTREAM CG5535 INTRON CG5535	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6771519	3L_6771519_SNP [dm3] 3L_6778419_SNP [dm6]	A	G	7.143e^-5	0.866	INTERGENIC	regulatory region REDfly_CRMs
3L	16882167	3L_16882167_SNP [dm3] 3L_16889067_SNP [dm6]	C	T	7.162e^-5	0.866	INTRON Lmpt
3L	6047961	3L_6047961_SNP [dm3] 3L_6054861_SNP [dm6]	G	T	7.206e^-5	0.866	UPSTREAM tan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3R	4324598	3R_4324598_SNP [dm3] 3R_8498876_SNP [dm6]	T	A	7.247e^-5	0.866	INTERGENIC
3L	13029743	3L_13029743_SNP [dm3] 3L_13036643_SNP [dm6]	T	A	7.385e^-5	0.866	UPSTREAM SRm160 DOWNSTREAM CG17672 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15116863	3R_15116863_SNP [dm3] 3R_19291141_SNP [dm6]	A	T	7.493e^-5	0.866	INTERGENIC
3L	15057218	3L_15057218_SNP [dm3] 3L_15064118_SNP [dm6]	T	A	7.503e^-5	0.866	INTRON Sytbeta	TF binding site mE1_TFBS_inv
3L	16329619	3L_16329619_SNP [dm3] 3L_16336519_SNP [dm6]	A	C	7.625e^-5	0.866	INTERGENIC
2L	7013282	2L_7013282_SNP [dm3] 2L_7013282_SNP [dm6]	G	C	7.635e^-5	0.866	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8156443	2L_8156443_SNP [dm3] 2L_8156443_SNP [dm6]	T	G	7.650e^-5	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	12211358	3R_12211358_SNP [dm3] 3R_16385636_SNP [dm6]	C	T	7.670e^-5	0.866	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27495458	3R_27495458_SNP [dm3] 3R_31669736_SNP [dm6]	C	T	7.750e^-5	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20126538	2L_20126538_SNP [dm3] 2L_20126538_SNP [dm6]	G	A	7.783e^-5	0.866	INTERGENIC
3R	27496311	3R_27496311_SNP [dm3] 3R_31670589_SNP [dm6]	T	A	7.852e^-5	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4834179	3L_4834179_DEL [dm3] 3L_4834179_DEL [dm6]	AAGCTA	A	7.874e^-5	0.866	UPSTREAM CG13708 INTERGENIC
2L	3988375	2L_3988375_SNP [dm3] 2L_3988375_SNP [dm6]	G	A	7.915e^-5	0.866	INTRON fred
3L	12255227	3L_12255227_SNP [dm3] 3L_12262127_SNP [dm6]	A	G	7.929e^-5	0.866	INTRON app	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	333603	2L_333603_SNP [dm3] 2L_333603_SNP [dm6]	G	C	7.936e^-5	0.866	INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	19630663	2R_19630663_SNP [dm3] 2R_23743140_SNP [dm6]	C	G	7.942e^-5	0.866	INTRON egl
2R	17111093	2R_17111093_SNP [dm3] 2R_21223588_SNP [dm6]	G	A	7.943e^-5	0.866	INTRON ASPP
X	21042613	X_21042613_SNP [dm3] X_21171586_SNP [dm6]	T	C	8.099e^-5	0.866	INTERGENIC	transposable element FlyBase
3R	14588697	3R_14588697_SNP [dm3] 3R_18762975_SNP [dm6]	A	G	8.148e^-5	0.866	INTRON CG7720
3L	13204825	3L_13204825_SNP [dm3] 3L_13211725_SNP [dm6]	G	C	8.169e^-5	0.866	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20020125	2L_20020125_SNP [dm3] 2L_20020125_SNP [dm6]	G	T	8.191e^-5	0.866	INTERGENIC
3R	4027089	3R_4027089_SNP [dm3] 3R_8201367_SNP [dm6]	C	A	8.251e^-5	0.866	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14552251	3R_14552251_SNP [dm3] 3R_18726529_SNP [dm6]	G	A	8.257e^-5	0.866	UPSTREAM CG7714 INTRON Cha
3R	5741016	3R_5741016_SNP [dm3] 3R_9915294_SNP [dm6]	T	C	8.299e^-5	0.866	INTRON Glut4EF
2R	11912455	2R_11912455_SNP [dm3] 2R_16024950_SNP [dm6]	A	G	8.357e^-5	0.866	UTR_3_PRIME casp DOWNSTREAM CG8399
3L	17840796	3L_17840796_SNP [dm3] 3L_17847696_SNP [dm6]	C	T	8.389e^-5	0.866	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14512706	3L_14512706_SNP [dm3] 3L_14519606_SNP [dm6]	A	C	8.415e^-5	0.866	DOWNSTREAM CG4613 INTRON bbg
3L	7731854	3L_7731854_SNP [dm3] 3L_7738754_SNP [dm6]	T	C	8.459e^-5	0.866	INTRON CG32373 & 1 other
X	7649446	X_7649446_SNP [dm3] X_7755413_SNP [dm6]	T	G	8.509e^-5	0.866	INTERGENIC
3L	17840294	3L_17840294_SNP [dm3] 3L_17847194_SNP [dm6]	G	A	8.529e^-5	0.866	UTR_5_PRIME CG7430 UPSTREAM MED19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14512756	3L_14512756_SNP [dm3] 3L_14519656_SNP [dm6]	A	T	8.617e^-5	0.866	DOWNSTREAM CG4613 INTRON bbg
3L	10243388	3L_10243388_DEL [dm3] 3L_10250288_DEL [dm6]	ACACAAT	G	8.664e^-5	0.866	INTERGENIC
3L	10243399	3L_10243399_SNP [dm3] 3L_10250299_SNP [dm6]	A	T	8.664e^-5	0.866	INTERGENIC
3L	10243400	3L_10243400_DEL [dm3] 3L_10250300_DEL [dm6]	GGA	G	8.664e^-5	0.866	INTERGENIC
2L	7412813	2L_7412813_SNP [dm3] 2L_7412813_SNP [dm6]	T	G	8.668e^-5	0.866	NON_SYNONYMOUS_CODING chm DOWNSTREAM CG15818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	318309	2L_318309_SNP [dm3] 2L_318309_SNP [dm6]	T	C	8.679e^-5	0.866	DOWNSTREAM CG11912 INTRON Plc21C
3L	6933120	3L_6933120_SNP [dm3] 3L_6940020_SNP [dm6]	T	C	8.898e^-5	0.866	UPSTREAM CR45412 INTERGENIC
2R	16337918	2R_16337918_DEL [dm3] 2R_20450413_DEL [dm6]	CG	C	8.939e^-5	0.866	INTRON CG12484
2R	11025034	2R_11025034_DEL [dm3] 2R_15137529_DEL [dm6]	GT	G	8.983e^-5	0.866	INTRON chn	TF binding site mE1_TFBS_inv
2R	17721633	2R_17721633_SNP [dm3] 2R_21834128_SNP [dm6]	T	A	9.013e^-5	0.866	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2R	16337897	2R_16337897_SNP [dm3] 2R_20450392_SNP [dm6]	C	G	9.044e^-5	0.866	INTRON CG12484
2L	8156424	2L_8156424_DEL [dm3] 2L_8156424_DEL [dm6]	TT	T	9.072e^-5	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	10279956	3L_10279956_SNP [dm3] 3L_10286856_SNP [dm6]	A	G	9.125e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11976461	2L_11976461_SNP [dm3] 2L_11976461_SNP [dm6]	C	T	9.266e^-5	0.866	INTERGENIC
3R	15116882	3R_15116882_SNP [dm3] 3R_19291160_SNP [dm6]	A	G	9.285e^-5	0.866	INTERGENIC
3L	10243396	3L_10243396_SNP [dm3] 3L_10250296_SNP [dm6]	T	A	9.286e^-5	0.866	INTERGENIC
X	10613681	X_10613681_SNP [dm3] X_10719648_SNP [dm6]	C	G	9.347e^-5	0.866	INTRON CG32676
2R	17991155	2R_17991155_SNP [dm3] 2R_22103650_SNP [dm6]	C	T	9.393e^-5	0.866	SYNONYMOUS_CODING CG6613
3L	3750172	3L_3750172_SNP [dm3] 3L_3750172_SNP [dm6]	T	G	9.417e^-5	0.866	INTRON CG32264
2L	11785949	2L_11785949_SNP [dm3] 2L_11785949_SNP [dm6]	A	G	9.479e^-5	0.866	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6318458	2R_6318458_SNP [dm3] 2R_10430953_SNP [dm6]	C	T	9.542e^-5	0.866	NON_SYNONYMOUS_CODING RanBPM UTR_5_PRIME RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17139235	2R_17139235_INS [dm3] 2R_21251730_INS [dm6]	G	GGCT	9.552e^-5	0.866	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
3R	6625827	3R_6625827_SNP [dm3] 3R_10800105_SNP [dm6]	T	G	9.576e^-5	0.866	INTRON CG14692
2R	18282901	2R_18282901_SNP [dm3] 2R_22395396_SNP [dm6]	C	T	9.598e^-5	0.866	INTRON babos
3L	15358464	3L_15358464_SNP [dm3] 3L_15365364_SNP [dm6]	T	A	9.615e^-5	0.866	INTERGENIC
2L	8270520	2L_8270520_SNP [dm3] 2L_8270520_SNP [dm6]	A	T	9.644e^-5	0.866	INTRON Btk29A	TF binding site mE1_TFBS_HSA
3R	5394472	3R_5394472_SNP [dm3] 3R_9568750_SNP [dm6]	G	C	9.689e^-5	0.866	SPLICE_SITE_REGION CG16789 SYNONYMOUS_CODING CG16789 DOWNSTREAM CG16790	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3202144	2L_3202144_SNP [dm3] 2L_3202144_SNP [dm6]	A	T	9.756e^-5	0.866	INTERGENIC
2L	8970156	2L_8970156_SNP [dm3] 2L_8970156_SNP [dm6]	A	G	9.798e^-5	0.866	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
3L	17874182	3L_17874182_SNP [dm3] 3L_17881082_SNP [dm6]	G	A	9.810e^-5	0.866	NON_SYNONYMOUS_CODING CG7408
3R	25408244	3R_25408244_SNP [dm3] 3R_29582522_SNP [dm6]	A	G	9.819e^-5	0.866	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	21050764	X_21050764_SNP [dm3] X_21179737_SNP [dm6]	G	A	9.973e^-5	0.866	INTERGENIC
3R	14588656	3R_14588656_SNP [dm3] 3R_18762934_SNP [dm6]	A	T	1.013e^-4	0.866	INTRON CG7720
3R	6954225	3R_6954225_SNP [dm3] 3R_11128503_SNP [dm6]	A	G	1.017e^-4	0.866	UPSTREAM Ugt86Dd INTERGENIC
2L	5296893	2L_5296893_SNP [dm3] 2L_5296893_SNP [dm6]	A	T	1.017e^-4	0.866	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9738980	2L_9738980_INS [dm3] 2L_9738980_INS [dm6]	C	CC	1.026e^-4	0.866	INTRON Nckx30C
2R	8440375	2R_8440375_SNP [dm3] 2R_12552870_SNP [dm6]	A	G	1.030e^-4	0.866	INTRON fra
2R	7369023	2R_7369023_SNP [dm3] 2R_11481518_SNP [dm6]	G	T	1.032e^-4	0.866	INTRON inv
2R	7369104	2R_7369104_SNP [dm3] 2R_11481599_SNP [dm6]	C	A	1.032e^-4	0.866	INTRON inv
2L	6459162	2L_6459162_SNP [dm3] 2L_6459162_SNP [dm6]	C	T	1.035e^-4	0.866	UTR_3_PRIME CG16947 DOWNSTREAM CG16947 & 1 other
3R	5340509	3R_5340509_SNP [dm3] 3R_9514787_SNP [dm6]	A	C	1.049e^-4	0.866	SYNONYMOUS_CODING Rlb1 DOWNSTREAM mRpL47	TF binding site BDTNP1_TFBS_sna
2L	7153719	2L_7153719_SNP [dm3] 2L_7153719_SNP [dm6]	G	A	1.053e^-4	0.866	INTRON Pvf3
X	21126580	X_21126580_SNP [dm3] X_21255553_SNP [dm6]	T	C	1.058e^-4	0.866	INTRON CG32521
X	20780714	X_20780714_SNP [dm3] X_20909687_SNP [dm6]	G	A	1.060e^-4	0.866	INTRON shakB
2L	7411521	2L_7411521_SNP [dm3] 2L_7411521_SNP [dm6]	C	T	1.062e^-4	0.866	SYNONYMOUS_CODING CG15818 UPSTREAM chm	TF binding site BDTNP1_TFBS_dl
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.070e^-4	0.866	INTRON eIF5B
2L	19724239	2L_19724239_SNP [dm3] 2L_19724239_SNP [dm6]	T	A	1.075e^-4	0.866	INTRON Lar
2L	19724240	2L_19724240_SNP [dm3] 2L_19724240_SNP [dm6]	C	T	1.075e^-4	0.866	INTRON Lar
2L	5296867	2L_5296867_INS [dm3] 2L_5296867_INS [dm6]	A	ATGATA	1.075e^-4	0.866	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25379363	3R_25379363_SNP [dm3] 3R_29553641_SNP [dm6]	G	A	1.076e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18075396	2R_18075396_SNP [dm3] 2R_22187891_SNP [dm6]	C	T	1.077e^-4	0.866	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_sens
3L	13431298	3L_13431298_SNP [dm3] 3L_13438198_SNP [dm6]	C	T	1.082e^-4	0.866	SPLICE_SITE_REGION CG10725 INTRON CG10725	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13431303	3L_13431303_SNP [dm3] 3L_13438203_SNP [dm6]	G	A	1.082e^-4	0.866	INTRON CG10725	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13431304	3L_13431304_SNP [dm3] 3L_13438204_SNP [dm6]	C	T	1.082e^-4	0.866	INTRON CG10725	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10897680	2L_10897680_SNP [dm3] 2L_10897680_SNP [dm6]	G	T	1.083e^-4	0.866	INTERGENIC
2R	17717260	2R_17717260_SNP [dm3] 2R_21829755_SNP [dm6]	C	A	1.092e^-4	0.866	SYNONYMOUS_CODING CG13492
2L	2330521	2L_2330521_SNP [dm3] 2L_2330521_SNP [dm6]	C	T	1.097e^-4	0.866	INTRON CG9967 & 1 other
3R	15561882	3R_15561882_SNP [dm3] 3R_19736160_SNP [dm6]	G	T	1.099e^-4	0.866	INTRON GluClalpha
2L	13968604	2L_13968604_SNP [dm3] 2L_13968604_SNP [dm6]	C	G	1.101e^-4	0.866	SYNONYMOUS_CODING NimB4 UPSTREAM NimB3	TF binding site mE1_TFBS_cad
3L	13091688	3L_13091688_SNP [dm3] 3L_13098588_SNP [dm6]	T	G	1.107e^-4	0.866	INTERGENIC
3L	20072543	3L_20072543_SNP [dm3] 3L_20079443_SNP [dm6]	G	A	1.112e^-4	0.866	INTRON sNPF-R
X	20483652	X_20483652_INS [dm3] X_20612625_INS [dm6]	G	GGATA	1.112e^-4	0.866	INTRON RunxA
2L	8091231	2L_8091231_SNP [dm3] 2L_8091231_SNP [dm6]	T	C	1.122e^-4	0.866	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18931443	2R_18931443_SNP [dm3] 2R_23043920_SNP [dm6]	A	G	1.123e^-4	0.866	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14588655	3R_14588655_SNP [dm3] 3R_18762933_SNP [dm6]	T	A	1.131e^-4	0.866	INTRON CG7720
3R	14588692	3R_14588692_SNP [dm3] 3R_18762970_SNP [dm6]	G	A	1.131e^-4	0.866	INTRON CG7720
3R	5352435	3R_5352435_INS [dm3] 3R_9526713_INS [dm6]	A	AAACAAAC	1.134e^-4	0.866	UTR_3_PRIME CG8176
2R	13172084	2R_13172084_SNP [dm3] 2R_17284579_SNP [dm6]	T	C	1.143e^-4	0.866	INTRON mbl
2R	7318652	2R_7318652_SNP [dm3] 2R_11431147_SNP [dm6]	A	T	1.148e^-4	0.866	INTERGENIC
3R	15116866	3R_15116866_SNP [dm3] 3R_19291144_SNP [dm6]	C	T	1.149e^-4	0.866	INTERGENIC
2R	8440377	2R_8440377_SNP [dm3] 2R_12552872_SNP [dm6]	A	C	1.185e^-4	0.866	INTRON fra
3R	23290338	3R_23290338_SNP [dm3] 3R_27464616_SNP [dm6]	C	T	1.186e^-4	0.866	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21376415	X_21376415_SNP [dm3] X_21505388_SNP [dm6]	C	T	1.192e^-4	0.866	INTRON CR45082
3R	14559593	3R_14559593_SNP [dm3] 3R_18733871_SNP [dm6]	T	G	1.202e^-4	0.866	SYNONYMOUS_CODING Mekk1 DOWNSTREAM CG14302	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11882473	3L_11882473_SNP [dm3] 3L_11889373_SNP [dm6]	C	A	1.203e^-4	0.866	UPSTREAM CG5897 INTRON CG44837
3L	12641183	3L_12641183_SNP [dm3] 3L_12648083_SNP [dm6]	A	G	1.207e^-4	0.866	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15775425	2R_15775425_SNP [dm3] 2R_19887920_SNP [dm6]	C	T	1.213e^-4	0.866	INTERGENIC
3L	18103554	3L_18103554_SNP [dm3] 3L_18110454_SNP [dm6]	T	C	1.227e^-4	0.866	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site mE1_TFBS_inv
2L	17261024	2L_17261024_SNP [dm3] 2L_17261024_SNP [dm6]	G	C	1.229e^-4	0.866	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21628811	3R_21628811_SNP [dm3] 3R_25803089_SNP [dm6]	T	C	1.250e^-4	0.866	INTERGENIC
3L	14114870	3L_14114870_SNP [dm3] 3L_14121770_SNP [dm6]	G	T	1.251e^-4	0.866	INTRON Sox21b	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13205249	3L_13205249_SNP [dm3] 3L_13212149_SNP [dm6]	A	T	1.252e^-4	0.866	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	514442	3L_514442_SNP [dm3] 3L_514442_SNP [dm6]	A	T	1.254e^-4	0.866	INTRON klar
2R	13172094	2R_13172094_SNP [dm3] 2R_17284589_SNP [dm6]	C	T	1.258e^-4	0.866	INTRON mbl
X	11240344	X_11240344_SNP [dm3] X_11346311_SNP [dm6]	C	T	1.259e^-4	0.866	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18069496	2R_18069496_SNP [dm3] 2R_22181991_SNP [dm6]	C	T	1.259e^-4	0.866	NON_SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	19630665	2R_19630665_SNP [dm3] 2R_23743142_SNP [dm6]	C	A	1.262e^-4	0.866	INTRON egl
3R	5862848	3R_5862848_SNP [dm3] 3R_10037126_SNP [dm6]	T	A	1.270e^-4	0.866	INTRON Mical
3R	19253043	3R_19253043_SNP [dm3] 3R_23427321_SNP [dm6]	T	A	1.272e^-4	0.866	INTRON CG4374
3L	18152138	3L_18152138_SNP [dm3] 3L_18159038_SNP [dm6]	A	T	1.276e^-4	0.866	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15116550	3R_15116550_SNP [dm3] 3R_19290828_SNP [dm6]	T	G	1.286e^-4	0.866	INTERGENIC
3R	5354996	3R_5354996_SNP [dm3] 3R_9529274_SNP [dm6]	A	T	1.287e^-4	0.866	UTR_3_PRIME by INTRON by
3R	16573400	3R_16573400_SNP [dm3] 3R_20747678_SNP [dm6]	C	T	1.291e^-4	0.866	SYNONYMOUS_CODING CG42322 DOWNSTREAM Prosalpha4T1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13207380	3L_13207380_SNP [dm3] 3L_13214280_SNP [dm6]	G	A	1.298e^-4	0.866	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18282894	2R_18282894_SNP [dm3] 2R_22395389_SNP [dm6]	A	G	1.304e^-4	0.866	INTRON babos
2L	8156438	2L_8156438_SNP [dm3] 2L_8156438_SNP [dm6]	T	C	1.310e^-4	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	8970178	2L_8970178_SNP [dm3] 2L_8970178_SNP [dm6]	G	T	1.324e^-4	0.866	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
3R	16370021	3R_16370021_SNP [dm3] 3R_20544299_SNP [dm6]	T	C	1.328e^-4	0.866	INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13431323	3L_13431323_SNP [dm3] 3L_13438223_SNP [dm6]	C	T	1.335e^-4	0.866	INTRON CG10725	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17997416	3R_17997416_SNP [dm3] 3R_22171694_SNP [dm6]	C	T	1.340e^-4	0.866	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12494918	2L_12494918_SNP [dm3] 2L_12494918_SNP [dm6]	T	C	1.348e^-4	0.866	INTRON bun
3R	19804398	3R_19804398_SNP [dm3] 3R_23978676_SNP [dm6]	C	T	1.351e^-4	0.866	INTRON CG31140
X	21042690	X_21042690_SNP [dm3] X_21171663_SNP [dm6]	T	C	1.354e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	5296159	2L_5296159_SNP [dm3] 2L_5296159_SNP [dm6]	A	G	1.355e^-4	0.866	INTRON vri
3R	14588665	3R_14588665_SNP [dm3] 3R_18762943_SNP [dm6]	G	C	1.355e^-4	0.866	INTRON CG7720
2L	2402190	2L_2402190_SNP [dm3] 2L_2402190_SNP [dm6]	G	T	1.356e^-4	0.866	UTR_5_PRIME VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13029688	3L_13029688_SNP [dm3] 3L_13036588_SNP [dm6]	G	A	1.360e^-4	0.866	UPSTREAM SRm160 DOWNSTREAM CG17672 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15561499	3R_15561499_SNP [dm3] 3R_19735777_SNP [dm6]	C	T	1.371e^-4	0.866	INTRON GluClalpha
2R	16053397	2R_16053397_SNP [dm3] 2R_20165892_SNP [dm6]	C	T	1.371e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5348117	3R_5348117_SNP [dm3] 3R_9522395_SNP [dm6]	T	C	1.377e^-4	0.866	SYNONYMOUS_CODING CG8176
3L	13741980	3L_13741980_SNP [dm3] 3L_13748880_SNP [dm6]	A	G	1.381e^-4	0.866	INTRON bru-3
X	8664461	X_8664461_SNP [dm3] X_8770428_SNP [dm6]	C	T	1.383e^-4	0.866	INTRON Lim1	TF binding site BDTNP1_TFBS_twi
3L	15358629	3L_15358629_SNP [dm3] 3L_15365529_SNP [dm6]	G	A	1.389e^-4	0.866	INTERGENIC
3R	11237774	3R_11237774_SNP [dm3] 3R_15412052_SNP [dm6]	A	T	1.389e^-4	0.866	INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17260993	2L_17260993_SNP [dm3] 2L_17260993_SNP [dm6]	G	C	1.392e^-4	0.866	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	5351455	3R_5351455_SNP [dm3] 3R_9525733_SNP [dm6]	T	C	1.396e^-4	0.866	SYNONYMOUS_CODING CG8176	TF binding site mE1_TFBS_inv
2L	13567945	2L_13567945_SNP [dm3] 2L_13567945_SNP [dm6]	A	T	1.400e^-4	0.866	INTRON kuz
2R	5154833	2R_5154833_SNP [dm3] 2R_9267328_SNP [dm6]	C	A	1.400e^-4	0.866	INTRON Pkn
2R	5154836	2R_5154836_SNP [dm3] 2R_9267331_SNP [dm6]	G	C	1.400e^-4	0.866	INTRON Pkn
3R	1556855	3R_1556855_SNP [dm3] 3R_5731133_SNP [dm6]	T	G	1.411e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	11112261	3R_11112261_SNP [dm3] 3R_15286539_SNP [dm6]	T	C	1.425e^-4	0.866	SYNONYMOUS_CODING Tm1 UTR_5_PRIME Tm1 INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19724236	2L_19724236_SNP [dm3] 2L_19724236_SNP [dm6]	C	A	1.425e^-4	0.866	INTRON Lar
3L	12597716	3L_12597716_SNP [dm3] 3L_12604616_SNP [dm6]	G	A	1.447e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	18243917	2L_18243917_SNP [dm3] 2L_18243917_SNP [dm6]	G	A	1.448e^-4	0.866	INTRON CG42750
2R	19098077	2R_19098077_SNP [dm3] 2R_23210554_SNP [dm6]	G	A	1.458e^-4	0.866	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	550972	2L_550972_SNP [dm3] 2L_550972_SNP [dm6]	T	G	1.460e^-4	0.866	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2822041	3R_2822041_SNP [dm3] 3R_6996319_SNP [dm6]	T	C	1.460e^-4	0.866	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13029716	3L_13029716_SNP [dm3] 3L_13036616_SNP [dm6]	C	T	1.465e^-4	0.866	UPSTREAM SRm160 DOWNSTREAM CG17672 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15116672	3R_15116672_SNP [dm3] 3R_19290950_SNP [dm6]	C	A	1.469e^-4	0.866	INTERGENIC
3L	3842537	3L_3842537_SNP [dm3] 3L_3842537_SNP [dm6]	G	T	1.482e^-4	0.866	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17834954	3L_17834954_SNP [dm3] 3L_17841854_SNP [dm6]	T	A	1.490e^-4	0.866	SYNONYMOUS_CODING CG5567 UPSTREAM CG5577 EXON CR45175	TF binding site mE1_TFBS_sens
3L	13205736	3L_13205736_SNP [dm3] 3L_13212636_SNP [dm6]	C	T	1.493e^-4	0.866	DOWNSTREAM tRNA:CR32126 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16637996	3L_16637996_SNP [dm3] 3L_16644896_SNP [dm6]	G	A	1.495e^-4	0.866	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5251741	X_5251741_SNP [dm3] X_5357708_SNP [dm6]	G	T	1.497e^-4	0.866	UPSTREAM SK INTRON SK
3L	19259042	3L_19259042_SNP [dm3] 3L_19265942_SNP [dm6]	A	G	1.497e^-4	0.866	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
3R	15116723	3R_15116723_SNP [dm3] 3R_19291001_SNP [dm6]	A	G	1.499e^-4	0.866	INTERGENIC
3L	6048086	3L_6048086_SNP [dm3] 3L_6054986_SNP [dm6]	G	A	1.499e^-4	0.866	UPSTREAM tan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3R	27494348	3R_27494348_SNP [dm3] 3R_31668626_SNP [dm6]	C	T	1.502e^-4	0.866	UPSTREAM CG1815 INTERGENIC
2R	13172025	2R_13172025_SNP [dm3] 2R_17284520_SNP [dm6]	T	C	1.503e^-4	0.866	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22988204	3R_22988204_SNP [dm3] 3R_27162482_SNP [dm6]	G	C	1.507e^-4	0.866	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3R	15116850	3R_15116850_SNP [dm3] 3R_19291128_SNP [dm6]	A	G	1.509e^-4	0.866	INTERGENIC
3L	16551174	3L_16551174_SNP [dm3] 3L_16558074_SNP [dm6]	A	C	1.513e^-4	0.866	DOWNSTREAM CG4229 INTERGENIC
3R	23123243	3R_23123243_SNP [dm3] 3R_27297521_SNP [dm6]	T	C	1.514e^-4	0.866	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3L	17850541	3L_17850541_SNP [dm3] 3L_17857441_SNP [dm6]	G	A	1.521e^-4	0.866	UPSTREAM CG5535 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1699191	2L_1699191_SNP [dm3] 2L_1699191_SNP [dm6]	T	A	1.528e^-4	0.866	UTR_3_PRIME chinmo DOWNSTREAM chinmo
3R	26174967	3R_26174967_SNP [dm3] 3R_30349245_SNP [dm6]	T	A	1.531e^-4	0.866	INTRON hdc
X	15498914	X_15498914_INS [dm3] X_15604881_INS [dm6]	T	GA	1.539e^-4	0.866	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl
2L	318906	2L_318906_SNP [dm3] 2L_318906_SNP [dm6]	C	T	1.551e^-4	0.866	NON_SYNONYMOUS_CODING CG11912 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9481866	3L_9481866_SNP [dm3] 3L_9488766_SNP [dm6]	A	G	1.551e^-4	0.866	UPSTREAM pall DOWNSTREAM CG32037 INTRON CG32036
X	20483658	X_20483658_SNP [dm3] X_20612631_SNP [dm6]	T	C	1.554e^-4	0.866	INTRON RunxA
X	11240224	X_11240224_SNP [dm3] X_11346191_SNP [dm6]	C	T	1.557e^-4	0.866	INTRON CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5359172	3R_5359172_SNP [dm3] 3R_9533450_SNP [dm6]	A	G	1.558e^-4	0.866	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	1546912	3R_1546912_SNP [dm3] 3R_5721190_SNP [dm6]	T	A	1.567e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16637995	3L_16637995_SNP [dm3] 3L_16644895_SNP [dm6]	G	T	1.569e^-4	0.866	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8916660	2R_8916660_SNP [dm3] 2R_13029155_SNP [dm6]	A	C	1.570e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	20845968	X_20845968_SNP [dm3] X_20974941_SNP [dm6]	A	T	1.579e^-4	0.866	INTERGENIC
3R	5380538	3R_5380538_SNP [dm3] 3R_9554816_SNP [dm6]	T	G	1.586e^-4	0.866	SYNONYMOUS_CODING CG9386 UPSTREAM CG8199	TF binding site mE1_TFBS_sens
2R	8760487	2R_8760487_SNP [dm3] 2R_12872982_SNP [dm6]	G	T	1.586e^-4	0.866	NON_SYNONYMOUS_CODING CG3790 EXON CR43469	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	9639290	3R_9639290_SNP [dm3] 3R_13813568_SNP [dm6]	T	A	1.587e^-4	0.866	UTR_5_PRIME tal-2A & 2 others UTR_3_PRIME tal-1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	13291949	2R_13291949_SNP [dm3] 2R_17404444_SNP [dm6]	T	C	1.596e^-4	0.866	NON_SYNONYMOUS_CODING Sip1 DOWNSTREAM CG6568	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3780988	3R_3780988_SNP [dm3] 3R_7955266_SNP [dm6]	C	A	1.602e^-4	0.866	INTRON dsx
X	3481970	X_3481970_SNP [dm3] X_3587937_SNP [dm6]	G	C	1.603e^-4	0.866	INTRON AstA-R1
2R	8760304	2R_8760304_SNP [dm3] 2R_12872799_SNP [dm6]	T	A	1.604e^-4	0.866	UTR_3_PRIME CG3790 EXON CR43469	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	21042599	X_21042599_SNP [dm3] X_21171572_SNP [dm6]	A	C	1.604e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	5654120	2L_5654120_SNP [dm3] 2L_5654120_SNP [dm6]	G	A	1.606e^-4	0.866	INTRON CG31646
3R	7728015	3R_7728015_SNP [dm3] 3R_11902293_SNP [dm6]	C	T	1.606e^-4	0.866	INTRON Cad87A
2R	18282856	2R_18282856_SNP [dm3] 2R_22395351_SNP [dm6]	G	T	1.611e^-4	0.866	INTRON babos
2R	16338097	2R_16338097_SNP [dm3] 2R_20450592_SNP [dm6]	C	T	1.618e^-4	0.866	INTRON CG12484
3L	6928748	3L_6928748_SNP [dm3] 3L_6935648_SNP [dm6]	C	A	1.630e^-4	0.866	UPSTREAM CR45414 DOWNSTREAM CG14820 EXON CR45415
3L	13184166	3L_13184166_SNP [dm3] 3L_13191066_SNP [dm6]	T	C	1.633e^-4	0.866	INTERGENIC
X	1753867	X_1753867_SNP [dm3] X_1859834_SNP [dm6]	G	A	1.636e^-4	0.866	UPSTREAM CG14812 INTRON deltaCOP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7318659	2R_7318659_SNP [dm3] 2R_11431154_SNP [dm6]	G	T	1.643e^-4	0.866	INTERGENIC
X	19161161	X_19161161_SNP [dm3] X_19267128_SNP [dm6]	G	A	1.647e^-4	0.866	SYNONYMOUS_CODING CG8010 INTRON Vav	TF binding site mE1_TFBS_cad
2R	19098073	2R_19098073_SNP [dm3] 2R_23210550_SNP [dm6]	T	G	1.650e^-4	0.866	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14550932	3R_14550932_SNP [dm3] 3R_18725210_SNP [dm6]	G	T	1.651e^-4	0.866	SYNONYMOUS_CODING Cha DOWNSTREAM CG7714	TF binding site mE1_TFBS_chinmo
3L	16637958	3L_16637958_SNP [dm3] 3L_16644858_SNP [dm6]	A	G	1.652e^-4	0.866	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23425067	3R_23425067_SNP [dm3] 3R_27599345_SNP [dm6]	A	T	1.654e^-4	0.866	SPLICE_SITE_REGION dsd INTRON dsd
2L	17261019	2L_17261019_SNP [dm3] 2L_17261019_SNP [dm6]	T	A	1.657e^-4	0.866	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6933095	3L_6933095_SNP [dm3] 3L_6939995_SNP [dm6]	T	C	1.663e^-4	0.866	UPSTREAM CR45412 INTERGENIC
3R	11001997	3R_11001997_SNP [dm3] 3R_15176275_SNP [dm6]	A	G	1.682e^-4	0.866	SYNONYMOUS_CODING Mf UTR_3_PRIME Mf INTRON Gyc88E
3L	9648509	3L_9648509_SNP [dm3] 3L_9655409_SNP [dm6]	T	G	1.683e^-4	0.866	INTRON fry & 1 other
2R	3528417	2R_3528417_SNP [dm3] 2R_7640912_SNP [dm6]	A	T	1.688e^-4	0.866	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17347195	3L_17347195_SNP [dm3] 3L_17354095_SNP [dm6]	C	T	1.700e^-4	0.866	INTRON CG7692	TF binding site mE1_TFBS_sens
3R	18140317	3R_18140317_SNP [dm3] 3R_22314595_SNP [dm6]	G	T	1.701e^-4	0.866	INTRON CG34377
3R	19001870	3R_19001870_SNP [dm3] 3R_23176148_SNP [dm6]	T	A	1.705e^-4	0.866	INTRON Irk1
2L	9543349	2L_9543349_SNP [dm3] 2L_9543349_SNP [dm6]	G	A	1.709e^-4	0.866	SYNONYMOUS_CODING Cpr30B UPSTREAM CG13113 DOWNSTREAM CG17855
3R	27496132	3R_27496132_SNP [dm3] 3R_31670410_SNP [dm6]	A	C	1.713e^-4	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	15729184	2R_15729184_SNP [dm3] 2R_19841679_SNP [dm6]	A	G	1.713e^-4	0.866	DOWNSTREAM CG44569 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	16059546	2R_16059546_SNP [dm3] 2R_20172041_SNP [dm6]	G	A	1.715e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	22682670	3R_22682670_SNP [dm3] 3R_26856948_SNP [dm6]	C	T	1.716e^-4	0.866	INTRON Lerp
2R	13172015	2R_13172015_SNP [dm3] 2R_17284510_SNP [dm6]	A	T	1.719e^-4	0.866	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17867233	3L_17867233_SNP [dm3] 3L_17874133_SNP [dm6]	G	T	1.721e^-4	0.866	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10593103	X_10593103_SNP [dm3] X_10699070_SNP [dm6]	C	T	1.725e^-4	0.866	INTRON X11Lbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9399641	2L_9399641_SNP [dm3] 2L_9399641_SNP [dm6]	A	C	1.725e^-4	0.866	INTRON Shawl
3L	17222366	3L_17222366_SNP [dm3] 3L_17229266_SNP [dm6]	T	C	1.726e^-4	0.866	INTRON Rbp6
2R	6333803	2R_6333803_SNP [dm3] 2R_10446298_SNP [dm6]	G	A	1.730e^-4	0.866	INTRON Galphao
2R	11837188	2R_11837188_SNP [dm3] 2R_15949683_SNP [dm6]	G	A	1.734e^-4	0.866	SYNONYMOUS_CODING Strn-Mlck
3L	13188036	3L_13188036_SNP [dm3] 3L_13194936_SNP [dm6]	G	C	1.734e^-4	0.866	INTERGENIC
3R	3952231	3R_3952231_SNP [dm3] 3R_8126509_SNP [dm6]	A	G	1.735e^-4	0.866	UPSTREAM Gie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9685343	3R_9685343_SNP [dm3] 3R_13859621_SNP [dm6]	C	T	1.735e^-4	0.866	INTERGENIC
3R	14562798	3R_14562798_SNP [dm3] 3R_18737076_SNP [dm6]	G	T	1.737e^-4	0.866	INTRON Mekk1
3R	5359196	3R_5359196_INS [dm3] 3R_9533474_INS [dm6]	CAGC	TTCTATTCTA	1.740e^-4	0.866	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	18190971	3L_18190971_SNP [dm3] 3L_18197871_SNP [dm6]	A	T	1.752e^-4	0.866	DOWNSTREAM CR45234 INTERGENIC
2R	9199555	2R_9199555_SNP [dm3] 2R_13312050_SNP [dm6]	C	A	1.767e^-4	0.866	INTERGENIC
3R	25887388	3R_25887388_DEL [dm3] 3R_30061666_DEL [dm6]	TT	T	1.769e^-4	0.866	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12394592	2R_12394592_INS [dm3] 2R_16507087_INS [dm6]	T	AAC	1.770e^-4	0.866	INTRON Sema-2a
3L	14114402	3L_14114402_SNP [dm3] 3L_14121302_SNP [dm6]	T	A	1.771e^-4	0.866	INTRON Sox21b
3R	17772590	3R_17772590_SNP [dm3] 3R_21946868_SNP [dm6]	G	A	1.776e^-4	0.866	INTERGENIC
2L	5686568	2L_5686568_SNP [dm3] 2L_5686568_SNP [dm6]	G	A	1.776e^-4	0.866	INTERGENIC
X	21042104	X_21042104_SNP [dm3] X_21171077_SNP [dm6]	T	A	1.782e^-4	0.866	INTERGENIC	transposable element FlyBase
X	21042124	X_21042124_SNP [dm3] X_21171097_SNP [dm6]	T	A	1.782e^-4	0.866	INTERGENIC	transposable element FlyBase
X	21042618	X_21042618_SNP [dm3] X_21171591_SNP [dm6]	T	C	1.782e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	7411515	2L_7411515_SNP [dm3] 2L_7411515_SNP [dm6]	G	A	1.783e^-4	0.866	NON_SYNONYMOUS_CODING CG15818 UPSTREAM chm	TF binding site BDTNP1_TFBS_dl
2R	6501677	2R_6501677_SNP [dm3] 2R_10614172_SNP [dm6]	T	C	1.783e^-4	0.866	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5299655	3R_5299655_SNP [dm3] 3R_9473933_SNP [dm6]	A	G	1.796e^-4	0.866	INTRON CG16779
3R	10969882	3R_10969882_SNP [dm3] 3R_15144160_SNP [dm6]	A	C	1.798e^-4	0.866	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	16317833	3L_16317833_SNP [dm3] 3L_16324733_SNP [dm6]	G	A	1.824e^-4	0.866	DOWNSTREAM CG13040 & 1 other INTERGENIC
3L	6771958	3L_6771958_SNP [dm3] 3L_6778858_SNP [dm6]	G	A	1.826e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
3R	20845768	3R_20845768_SNP [dm3] 3R_25020046_SNP [dm6]	C	G	1.826e^-4	0.866	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27494596	3R_27494596_SNP [dm3] 3R_31668874_SNP [dm6]	G	T	1.830e^-4	0.866	UPSTREAM CG1815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15268448	2R_15268448_SNP [dm3] 2R_19380943_SNP [dm6]	G	C	1.851e^-4	0.866	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
2R	16053395	2R_16053395_SNP [dm3] 2R_20165890_SNP [dm6]	C	G	1.856e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12525836	3L_12525836_SNP [dm3] 3L_12532736_SNP [dm6]	T	A	1.859e^-4	0.866	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
2L	5296789	2L_5296789_DEL [dm3] 2L_5296789_DEL [dm6]	TGTACTAGATGCAT...	T	1.861e^-4	0.866	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9645365	3L_9645365_SNP [dm3] 3L_9652265_SNP [dm6]	G	A	1.863e^-4	0.866	INTRON fry & 1 other
3L	10451584	3L_10451584_SNP [dm3] 3L_10458484_SNP [dm6]	C	T	1.865e^-4	0.866	DOWNSTREAM Gem3 INTERGENIC
3R	15116625	3R_15116625_SNP [dm3] 3R_19290903_SNP [dm6]	T	G	1.886e^-4	0.866	INTERGENIC
2R	8761009	2R_8761009_SNP [dm3] 2R_12873504_SNP [dm6]	C	T	1.891e^-4	0.866	SYNONYMOUS_CODING CG3790 EXON CR43469	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20062728	2L_20062728_SNP [dm3] 2L_20062728_SNP [dm6]	T	A	1.892e^-4	0.866	SPLICE_SITE_REGION lok INTRON lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	13810419	2L_13810419_SNP [dm3] 2L_13810419_SNP [dm6]	A	G	1.903e^-4	0.866	SYNONYMOUS_CODING adat DOWNSTREAM CAH1	TF binding site mE1_TFBS_sens
3L	17830235	3L_17830235_SNP [dm3] 3L_17837135_SNP [dm6]	T	C	1.923e^-4	0.866	INTRON Grd	TF binding site BDTNP1_TFBS_da
2L	8302790	2L_8302790_SNP [dm3] 2L_8302790_SNP [dm6]	G	A	1.923e^-4	0.866	SYNONYMOUS_CODING wol UPSTREAM Scgalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	17871812	3L_17871812_SNP [dm3] 3L_17878712_SNP [dm6]	T	C	1.926e^-4	0.866	UPSTREAM CG7408 INTERGENIC
3L	17767400	3L_17767400_SNP [dm3] 3L_17774300_SNP [dm6]	A	G	1.936e^-4	0.866	INTERGENIC
X	21043375	X_21043375_SNP [dm3] X_21172348_SNP [dm6]	C	T	1.939e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	13211501	3L_13211501_SNP [dm3] 3L_13218401_SNP [dm6]	G	A	1.947e^-4	0.866	DOWNSTREAM CR43914 EXON CR45098
2R	12266696	2R_12266696_SNP [dm3] 2R_16379191_SNP [dm6]	C	T	1.947e^-4	0.866	DOWNSTREAM CR45317 EXON CR45316
3L	10243407	3L_10243407_SNP [dm3] 3L_10250307_SNP [dm6]	A	T	1.956e^-4	0.866	INTERGENIC
2L	19922779	2L_19922779_SNP [dm3] 2L_19922779_SNP [dm6]	T	A	1.957e^-4	0.866	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	5861900	3R_5861900_INS [dm3] 3R_10036178_INS [dm6]	G	GGAAGCG	1.961e^-4	0.866	INTRON Mical	TF binding site mE1_TFBS_Trl
3L	539931	3L_539931_SNP [dm3] 3L_539931_SNP [dm6]	T	C	1.964e^-4	0.866	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	6098577	2L_6098577_SNP [dm3] 2L_6098577_SNP [dm6]	T	C	1.965e^-4	0.866	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27495891	3R_27495891_INS [dm3] 3R_31670169_INS [dm6]	T	TT	1.966e^-4	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9539718	3L_9539718_SNP [dm3] 3L_9546618_SNP [dm6]	A	G	1.967e^-4	0.866	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	21045381	X_21045381_SNP [dm3] X_21174354_SNP [dm6]	T	C	1.974e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	5394984	3R_5394984_SNP [dm3] 3R_9569262_SNP [dm6]	A	T	1.981e^-4	0.866	NON_SYNONYMOUS_CODING CG16790 UTR_3_PRIME CG16790 DOWNSTREAM CG16789	TF binding site mE1_TFBS_chinmo
3L	14114182	3L_14114182_SNP [dm3] 3L_14121082_SNP [dm6]	G	T	1.982e^-4	0.866	INTRON Sox21b
2R	7318644	2R_7318644_SNP [dm3] 2R_11431139_SNP [dm6]	G	A	1.985e^-4	0.866	INTERGENIC
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	1.987e^-4	0.866	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	6048122	3L_6048122_SNP [dm3] 3L_6055022_SNP [dm6]	T	A	1.990e^-4	0.866	UPSTREAM tan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2R	7307773	2R_7307773_SNP [dm3] 2R_11420268_SNP [dm6]	G	C	1.995e^-4	0.866	INTRON Drip
2L	13044672	2L_13044672_SNP [dm3] 2L_13044672_SNP [dm6]	C	G	2.000e^-4	0.866	INTRON CG9932
2L	1329103	2L_1329103_DEL [dm3] 2L_1329103_DEL [dm6]	AA	A	2.011e^-4	0.866	UPSTREAM a5 INTERGENIC
X	21012120	X_21012120_SNP [dm3] X_21141093_SNP [dm6]	T	C	2.021e^-4	0.866	DOWNSTREAM CG34120 INTERGENIC
2L	7064890	2L_7064890_SNP [dm3] 2L_7064890_SNP [dm6]	C	T	2.022e^-4	0.866	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21045444	X_21045444_DEL [dm3] X_21174417_DEL [dm6]	CG	A	2.032e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	8910608	2L_8910608_SNP [dm3] 2L_8910608_SNP [dm6]	A	G	2.040e^-4	0.866	INTRON CG34398
2R	15963488	2R_15963488_SNP [dm3] 2R_20075983_SNP [dm6]	G	A	2.045e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13185057	3L_13185057_SNP [dm3] 3L_13191957_SNP [dm6]	G	T	2.048e^-4	0.866	INTERGENIC
3R	7701278	3R_7701278_SNP [dm3] 3R_11875556_SNP [dm6]	G	A	2.048e^-4	0.866	INTERGENIC
3L	13367260	3L_13367260_SNP [dm3] 3L_13374160_SNP [dm6]	A	T	2.051e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15775421	2R_15775421_SNP [dm3] 2R_19887916_SNP [dm6]	T	C	2.053e^-4	0.866	INTERGENIC
2R	15775430	2R_15775430_SNP [dm3] 2R_19887925_SNP [dm6]	T	A	2.053e^-4	0.866	INTERGENIC
X	2658954	X_2658954_SNP [dm3] X_2764921_SNP [dm6]	C	A	2.059e^-4	0.866	INTRON kirre	TF binding site mE1_TFBS_hkb
2R	19505623	2R_19505623_SNP [dm3] 2R_23618100_SNP [dm6]	G	T	2.062e^-4	0.866	INTERGENIC
3R	1693515	3R_1693515_SNP [dm3] 3R_5867793_SNP [dm6]	G	T	2.062e^-4	0.866	INTRON CG34113
3L	13375162	3L_13375162_SNP [dm3] 3L_13382062_SNP [dm6]	A	C	2.067e^-4	0.866	UPSTREAM CG14107 & 1 other INTERGENIC
3R	15116628	3R_15116628_SNP [dm3] 3R_19290906_SNP [dm6]	C	T	2.067e^-4	0.866	INTERGENIC
2R	16154779	2R_16154779_SNP [dm3] 2R_20267274_SNP [dm6]	C	T	2.068e^-4	0.866	SYNONYMOUS_CODING CG8908	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	6158110	2L_6158110_INS [dm3] 2L_6158110_INS [dm6]	A	AGAAT	2.075e^-4	0.866	INTERGENIC
2R	7318783	2R_7318783_DEL [dm3] 2R_11431278_DEL [dm6]	CAATAG	T	2.077e^-4	0.866	INTERGENIC
2R	16154797	2R_16154797_SNP [dm3] 2R_20267292_SNP [dm6]	C	T	2.079e^-4	0.866	SYNONYMOUS_CODING CG8908	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	5297563	2L_5297563_SNP [dm3] 2L_5297563_SNP [dm6]	A	G	2.081e^-4	0.866	INTRON vri EXON CR45730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	539908	3L_539908_DEL [dm3] 3L_539908_DEL [dm6]	TT	T	2.087e^-4	0.866	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	9916696	2L_9916696_SNP [dm3] 2L_9916696_SNP [dm6]	T	C	2.095e^-4	0.866	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27496358	3R_27496358_SNP [dm3] 3R_31670636_SNP [dm6]	T	A	2.103e^-4	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7741910	3R_7741910_SNP [dm3] 3R_11916188_SNP [dm6]	G	A	2.109e^-4	0.866	INTRON Cad87A
2R	17042245	2R_17042245_SNP [dm3] 2R_21154740_SNP [dm6]	T	C	2.112e^-4	0.866	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16327013	2R_16327013_SNP [dm3] 2R_20439508_SNP [dm6]	A	G	2.114e^-4	0.866	INTRON CG12484
2R	13172054	2R_13172054_SNP [dm3] 2R_17284549_SNP [dm6]	G	A	2.119e^-4	0.866	INTRON mbl
3R	15116688	3R_15116688_SNP [dm3] 3R_19290966_SNP [dm6]	C	T	2.120e^-4	0.866	INTERGENIC
3R	8394134	3R_8394134_SNP [dm3] 3R_12568412_SNP [dm6]	A	G	2.122e^-4	0.866	INTRON Octbeta2R
3L	13212742	3L_13212742_SNP [dm3] 3L_13219642_SNP [dm6]	C	A	2.132e^-4	0.866	UPSTREAM CR45098 INTERGENIC	TF binding site mE1_TFBS_inv
2L	318282	2L_318282_SNP [dm3] 2L_318282_SNP [dm6]	T	A	2.133e^-4	0.866	DOWNSTREAM CG11912 INTRON Plc21C
2R	16337933	2R_16337933_SNP [dm3] 2R_20450428_SNP [dm6]	A	T	2.134e^-4	0.866	INTRON CG12484
3L	9541392	3L_9541392_SNP [dm3] 3L_9548292_SNP [dm6]	A	G	2.135e^-4	0.866	INTRON CG42673
3R	14257147	3R_14257147_SNP [dm3] 3R_18431425_SNP [dm6]	G	A	2.135e^-4	0.866	UTR_3_PRIME fru INTRON fru	TF binding site mE1_TFBS_cad
2R	7317363	2R_7317363_SNP [dm3] 2R_11429858_SNP [dm6]	A	G	2.139e^-4	0.866	UPSTREAM Drip INTERGENIC
3L	5891188	3L_5891188_SNP [dm3] 3L_5898088_SNP [dm6]	T	C	2.147e^-4	0.866	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12116796	X_12116796_SNP [dm3] X_12222763_SNP [dm6]	T	G	2.155e^-4	0.866	INTRON Ten-a	TF binding site mE1_TFBS_zfh1
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	2.169e^-4	0.866	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15674027	3L_15674027_SNP [dm3] 3L_15680927_SNP [dm6]	C	T	2.170e^-4	0.866	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2R	4084432	2R_4084432_SNP [dm3] 2R_8196927_SNP [dm6]	A	C	2.170e^-4	0.866	INTRON LRP1
2R	17661436	2R_17661436_SNP [dm3] 2R_21773931_SNP [dm6]	A	G	2.173e^-4	0.866	SYNONYMOUS_CODING CG4021
2R	13172031	2R_13172031_SNP [dm3] 2R_17284526_SNP [dm6]	A	T	2.175e^-4	0.866	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5081264	2R_5081264_DEL [dm3] 2R_9193759_DEL [dm6]	CC	C	2.176e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21042552	X_21042552_SNP [dm3] X_21171525_SNP [dm6]	T	C	2.186e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	11245509	3R_11245509_DEL [dm3] 3R_15419787_DEL [dm6]	TCAGGAGCATATATCCTT...	T	2.199e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17848591	3L_17848591_SNP [dm3] 3L_17855491_SNP [dm6]	A	T	2.201e^-4	0.866	UTR_5_PRIME CG5535 INTRON CG5535	TF binding site mE1_TFBS_HSA
3R	27505223	3R_27505223_SNP [dm3] 3R_31679501_SNP [dm6]	G	T	2.212e^-4	0.866	INTRON CG11550	TF binding site mE1_TFBS_sens
2L	8837411	2L_8837411_SNP [dm3] 2L_8837411_SNP [dm6]	G	A	2.212e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19630638	2R_19630638_SNP [dm3] 2R_23743115_SNP [dm6]	G	A	2.217e^-4	0.866	INTRON egl
X	21042331	X_21042331_SNP [dm3] X_21171304_SNP [dm6]	C	T	2.221e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	14114910	3L_14114910_SNP [dm3] 3L_14121810_SNP [dm6]	G	T	2.223e^-4	0.866	INTRON Sox21b	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	13647654	2R_13647654_SNP [dm3] 2R_17760149_SNP [dm6]	G	A	2.223e^-4	0.866	SYNONYMOUS_CODING HLH54F UPSTREAM CG5009	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19804889	3R_19804889_SNP [dm3] 3R_23979167_SNP [dm6]	C	T	2.236e^-4	0.866	SYNONYMOUS_CODING CG31140
3L	2210696	3L_2210696_SNP [dm3] 3L_2210696_SNP [dm6]	A	G	2.238e^-4	0.866	DOWNSTREAM CG15878 INTERGENIC
2L	287226	2L_287226_SNP [dm3] 2L_287226_SNP [dm6]	T	A	2.242e^-4	0.866	UPSTREAM CG3625 DOWNSTREAM Amnionless INTRON CG3625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	5374870	3R_5374870_SNP [dm3] 3R_9549148_SNP [dm6]	T	C	2.252e^-4	0.866	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15775487	2R_15775487_SNP [dm3] 2R_19887982_SNP [dm6]	C	A	2.253e^-4	0.866	INTERGENIC
2L	7029273	2L_7029273_SNP [dm3] 2L_7029273_SNP [dm6]	G	A	2.254e^-4	0.866	DOWNSTREAM CG3476 INTERGENIC
3R	15116632	3R_15116632_SNP [dm3] 3R_19290910_SNP [dm6]	A	G	2.265e^-4	0.866	INTERGENIC
3L	20791767	3L_20791767_SNP [dm3] 3L_20798667_SNP [dm6]	C	A	2.265e^-4	0.866	UTR_5_PRIME CG4365 UPSTREAM CG4365 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11542422	3L_11542422_SNP [dm3] 3L_11549322_SNP [dm6]	G	T	2.268e^-4	0.866	INTRON Mob2
2R	7318831	2R_7318831_SNP [dm3] 2R_11431326_SNP [dm6]	G	T	2.272e^-4	0.866	INTERGENIC
2L	7063771	2L_7063771_SNP [dm3] 2L_7063771_SNP [dm6]	T	C	2.273e^-4	0.866	UPSTREAM Sem1 DOWNSTREAM Nuf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	19536902	3L_19536902_SNP [dm3] 3L_19543802_SNP [dm6]	T	C	2.274e^-4	0.866	UTR_5_PRIME CG9279 UPSTREAM CG9279 DOWNSTREAM l_3_76BDr & 1 other
2R	19505776	2R_19505776_SNP [dm3] 2R_23618253_SNP [dm6]	T	C	2.276e^-4	0.866	INTERGENIC
2L	8493138	2L_8493138_SNP [dm3] 2L_8493138_SNP [dm6]	C	T	2.288e^-4	0.866	INTRON Dh31
X	16427662	X_16427662_SNP [dm3] X_16533629_SNP [dm6]	T	A	2.291e^-4	0.866	UPSTREAM para INTERGENIC
3R	27496205	3R_27496205_SNP [dm3] 3R_31670483_SNP [dm6]	C	T	2.291e^-4	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	23123249	3R_23123249_SNP [dm3] 3R_27297527_SNP [dm6]	A	G	2.292e^-4	0.866	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
X	21037568	X_21037568_SNP [dm3] X_21166541_SNP [dm6]	C	T	2.294e^-4	0.866	INTERGENIC
3L	17835677	3L_17835677_SNP [dm3] 3L_17842577_SNP [dm6]	T	G	2.296e^-4	0.866	INTRON CG5567 EXON CR45175
2R	11156869	2R_11156869_SNP [dm3] 2R_15269364_SNP [dm6]	T	C	2.298e^-4	0.866	INTRON Trpm
2L	8156184	2L_8156184_SNP [dm3] 2L_8156184_SNP [dm6]	A	G	2.306e^-4	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	13185056	3L_13185056_SNP [dm3] 3L_13191956_SNP [dm6]	A	C	2.307e^-4	0.866	INTERGENIC
2R	16053475	2R_16053475_SNP [dm3] 2R_20165970_SNP [dm6]	G	A	2.317e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18013731	3L_18013731_DEL [dm3] 3L_18020631_DEL [dm6]	ATGTAATTATTAAATATAAT...	A	2.321e^-4	0.866	INTRON Eip75B
2R	9199113	2R_9199113_SNP [dm3] 2R_13311608_SNP [dm6]	C	A	2.321e^-4	0.866	INTERGENIC
2R	8770866	2R_8770866_SNP [dm3] 2R_12883361_SNP [dm6]	G	A	2.338e^-4	0.866	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	10481508	2L_10481508_SNP [dm3] 2L_10481508_SNP [dm6]	T	G	2.338e^-4	0.866	SYNONYMOUS_CODING RluA-2
3L	11880736	3L_11880736_SNP [dm3] 3L_11887636_SNP [dm6]	C	T	2.339e^-4	0.866	UTR_3_PRIME CG5897 INTRON CG44837
2L	14043460	2L_14043460_SNP [dm3] 2L_14043460_SNP [dm6]	A	T	2.343e^-4	0.866	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13316090	2L_13316090_SNP [dm3] 2L_13316090_SNP [dm6]	G	T	2.356e^-4	0.866	INTRON CG43778
2L	16399259	2L_16399259_SNP [dm3] 2L_16399259_SNP [dm6]	T	G	2.359e^-4	0.866	DOWNSTREAM CG5888 INTERGENIC
2R	18166701	2R_18166701_SNP [dm3] 2R_22279196_SNP [dm6]	A	C	2.373e^-4	0.866	INTRON dve
3R	10105279	3R_10105279_SNP [dm3] 3R_14279557_SNP [dm6]	C	G	2.381e^-4	0.866	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7177404	3R_7177404_SNP [dm3] 3R_11351682_SNP [dm6]	C	T	2.391e^-4	0.866	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12261850	3L_12261850_SNP [dm3] 3L_12268750_SNP [dm6]	G	A	2.392e^-4	0.866	SYNONYMOUS_CODING CG32100 DOWNSTREAM Pbgs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7065550	2L_7065550_SNP [dm3] 2L_7065550_SNP [dm6]	A	G	2.393e^-4	0.866	SYNONYMOUS_CODING Nuf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	5295020	2R_5295020_SNP [dm3] 2R_9407515_SNP [dm6]	G	C	2.395e^-4	0.866	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15775424	2R_15775424_SNP [dm3] 2R_19887919_SNP [dm6]	C	T	2.396e^-4	0.866	INTERGENIC
2L	13809013	2L_13809013_SNP [dm3] 2L_13809013_SNP [dm6]	T	C	2.398e^-4	0.866	SPLICE_SITE_REGION adat INTRON adat & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	6278038	3R_6278038_SNP [dm3] 3R_10452316_SNP [dm6]	G	C	2.401e^-4	0.866	INTERGENIC
3R	7028454	3R_7028454_DEL [dm3] 3R_11202732_DEL [dm6]	AA	A	2.404e^-4	0.866	UPSTREAM cu INTRON cu
3R	15116536	3R_15116536_SNP [dm3] 3R_19290814_SNP [dm6]	G	T	2.407e^-4	0.866	INTERGENIC
2L	1155302	2L_1155302_SNP [dm3] 2L_1155302_SNP [dm6]	T	G	2.410e^-4	0.866	INTRON capt
3R	14547916	3R_14547916_SNP [dm3] 3R_18722194_SNP [dm6]	G	T	2.413e^-4	0.866	NON_SYNONYMOUS_CODING CG34283 INTRON Cha	TF binding site mE1_TFBS_Trl
3R	15116533	3R_15116533_SNP [dm3] 3R_19290811_SNP [dm6]	G	C	2.418e^-4	0.866	INTERGENIC
3R	15116655	3R_15116655_SNP [dm3] 3R_19290933_SNP [dm6]	T	C	2.429e^-4	0.866	INTERGENIC
3L	14114098	3L_14114098_SNP [dm3] 3L_14120998_SNP [dm6]	T	A	2.434e^-4	0.866	INTRON Sox21b
X	21042332	X_21042332_SNP [dm3] X_21171305_SNP [dm6]	A	G	2.451e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	12678677	3L_12678677_SNP [dm3] 3L_12685577_SNP [dm6]	C	T	2.455e^-4	0.866	INTERGENIC
3L	17756004	3L_17756004_SNP [dm3] 3L_17762904_SNP [dm6]	T	A	2.459e^-4	0.866	UTR_3_PRIME CG32181 INTRON Adgf-A & 1 other
3R	19180720	3R_19180720_SNP [dm3] 3R_23354998_SNP [dm6]	A	G	2.461e^-4	0.866	SYNONYMOUS_CODING DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_chinmo
3R	12211735	3R_12211735_SNP [dm3] 3R_16386013_SNP [dm6]	A	T	2.465e^-4	0.866	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	8009043	2R_8009043_SNP [dm3] 2R_12121538_SNP [dm6]	T	C	2.472e^-4	0.866	INTERGENIC
3L	9539783	3L_9539783_SNP [dm3] 3L_9546683_SNP [dm6]	C	A	2.479e^-4	0.866	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	5296829	2L_5296829_SNP [dm3] 2L_5296829_SNP [dm6]	G	A	2.492e^-4	0.866	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10763624	X_10763624_SNP [dm3] X_10869591_SNP [dm6]	C	A	2.493e^-4	0.866	INTRON CG2157
3L	14114352	3L_14114352_SNP [dm3] 3L_14121252_SNP [dm6]	G	A	2.493e^-4	0.866	INTRON Sox21b
2L	12611304	2L_12611304_SNP [dm3] 2L_12611304_SNP [dm6]	T	G	2.503e^-4	0.866	NON_SYNONYMOUS_CODING Ref2 INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9792885	3L_9792885_SNP [dm3] 3L_9799785_SNP [dm6]	A	C	2.504e^-4	0.866	NON_SYNONYMOUS_CODING Ilp2 DOWNSTREAM Ilp1 INTRON CG32052
2R	17067227	2R_17067227_SNP [dm3] 2R_21179722_SNP [dm6]	G	A	2.510e^-4	0.866	INTRON Pu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21045435	X_21045435_SNP [dm3] X_21174408_SNP [dm6]	G	A	2.510e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	24579121	3R_24579121_SNP [dm3] 3R_28753399_SNP [dm6]	A	G	2.512e^-4	0.866	INTERGENIC
3L	12254975	3L_12254975_SNP [dm3] 3L_12261875_SNP [dm6]	C	T	2.519e^-4	0.866	INTRON app	TF binding site mE1_TFBS_inv
3R	15116523	3R_15116523_SNP [dm3] 3R_19290801_SNP [dm6]	T	A	2.521e^-4	0.866	INTERGENIC
3R	9744027	3R_9744027_SNP [dm3] 3R_13918305_SNP [dm6]	T	A	2.522e^-4	0.866	INTERGENIC
3R	6295577	3R_6295577_SNP [dm3] 3R_10469855_SNP [dm6]	G	C	2.525e^-4	0.866	INTERGENIC
2R	5081212	2R_5081212_SNP [dm3] 2R_9193707_SNP [dm6]	G	A	2.527e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21042597	X_21042597_SNP [dm3] X_21171570_SNP [dm6]	A	C	2.528e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	17261025	2L_17261025_SNP [dm3] 2L_17261025_SNP [dm6]	A	G	2.530e^-4	0.866	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	1318496	2L_1318496_SNP [dm3] 2L_1318496_SNP [dm6]	C	A	2.530e^-4	0.866	INTERGENIC
3L	18014158	3L_18014158_SNP [dm3] 3L_18021058_SNP [dm6]	G	A	2.533e^-4	0.866	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	17767104	3L_17767104_SNP [dm3] 3L_17774004_SNP [dm6]	C	T	2.539e^-4	0.866	INTERGENIC
2R	12608008	2R_12608008_SNP [dm3] 2R_16720503_SNP [dm6]	G	C	2.547e^-4	0.866	INTRON CG30463	TF binding site mE1_TFBS_inv
3R	4220974	3R_4220974_SNP [dm3] 3R_8395252_SNP [dm6]	T	C	2.549e^-4	0.866	INTRON CG45263
3L	11403478	3L_11403478_SNP [dm3] 3L_11410378_SNP [dm6]	C	T	2.554e^-4	0.866	INTERGENIC
2L	2697866	2L_2697866_SNP [dm3] 2L_2697866_SNP [dm6]	G	A	2.557e^-4	0.866	INTRON CG31690
2L	13232085	2L_13232085_SNP [dm3] 2L_13232085_SNP [dm6]	T	C	2.557e^-4	0.866	UTR_5_PRIME Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7741268	3R_7741268_SNP [dm3] 3R_11915546_SNP [dm6]	C	T	2.565e^-4	0.866	INTRON Cad87A
3R	4028466	3R_4028466_SNP [dm3] 3R_8202744_SNP [dm6]	G	C	2.566e^-4	0.866	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18282900	2R_18282900_SNP [dm3] 2R_22395395_SNP [dm6]	C	G	2.568e^-4	0.866	INTRON babos
3L	15358628	3L_15358628_SNP [dm3] 3L_15365528_SNP [dm6]	T	A	2.595e^-4	0.866	INTERGENIC
2R	10035795	2R_10035795_SNP [dm3] 2R_14148290_SNP [dm6]	A	T	2.598e^-4	0.866	UTR_3_PRIME Rcd1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	13650359	3L_13650359_SNP [dm3] 3L_13657259_SNP [dm6]	G	C	2.606e^-4	0.866	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9136912	2L_9136912_SNP [dm3] 2L_9136912_SNP [dm6]	G	A	2.607e^-4	0.866	INTRON CG32982
3R	15829805	3R_15829805_SNP [dm3] 3R_20004083_SNP [dm6]	G	A	2.609e^-4	0.866	INTRON Hs6st
2L	16399260	2L_16399260_DEL [dm3] 2L_16399260_DEL [dm6]	TT	T	2.612e^-4	0.866	DOWNSTREAM CG5888 INTERGENIC
2L	8059293	2L_8059293_SNP [dm3] 2L_8059293_SNP [dm6]	G	T	2.613e^-4	0.866	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27166130	3R_27166130_SNP [dm3] 3R_31340408_SNP [dm6]	C	A	2.615e^-4	0.866	INTRON CG34347
2R	12266611	2R_12266611_SNP [dm3] 2R_16379106_SNP [dm6]	G	A	2.617e^-4	0.866	DOWNSTREAM CR45317 EXON CR45316
3R	17020715	3R_17020715_SNP [dm3] 3R_21194993_SNP [dm6]	T	C	2.620e^-4	0.866	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_twi
2R	8760070	2R_8760070_SNP [dm3] 2R_12872565_SNP [dm6]	A	C	2.637e^-4	0.866	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17347156	3L_17347156_SNP [dm3] 3L_17354056_SNP [dm6]	T	C	2.640e^-4	0.866	INTRON CG7692	TF binding site mE1_TFBS_sens
3L	20770562	3L_20770562_SNP [dm3] 3L_20777462_SNP [dm6]	C	T	2.640e^-4	0.866	SYNONYMOUS_CODING Pex16 DOWNSTREAM Pitslre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13031108	3L_13031108_SNP [dm3] 3L_13038008_SNP [dm6]	C	A	2.649e^-4	0.866	SYNONYMOUS_CODING SRm160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16581851	2R_16581851_SNP [dm3] 2R_20694346_SNP [dm6]	A	T	2.653e^-4	0.866	DOWNSTREAM CG13438 INTERGENIC
3R	7754925	3R_7754925_SNP [dm3] 3R_11929203_SNP [dm6]	C	G	2.672e^-4	0.866	INTRON Cad87A
2L	8304998	2L_8304998_SNP [dm3] 2L_8304998_SNP [dm6]	C	A	2.685e^-4	0.866	UPSTREAM CG7840 INTRON Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5381373	3R_5381373_SNP [dm3] 3R_9555651_SNP [dm6]	G	T	2.696e^-4	0.866	UPSTREAM CG8199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5297610	2L_5297610_SNP [dm3] 2L_5297610_SNP [dm6]	A	G	2.702e^-4	0.866	INTRON vri EXON CR45730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	20560335	3R_20560335_SNP [dm3] 3R_24734613_SNP [dm6]	T	G	2.704e^-4	0.866	INTRON tok
3R	13137620	3R_13137620_SNP [dm3] 3R_17311898_SNP [dm6]	G	T	2.711e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16609685	2L_16609685_SNP [dm3] 2L_16609685_SNP [dm6]	G	A	2.716e^-4	0.866	SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	13375292	3L_13375292_SNP [dm3] 3L_13382192_SNP [dm6]	C	A	2.729e^-4	0.866	UPSTREAM CG14107 & 1 other INTERGENIC
2L	8108173	2L_8108173_SNP [dm3] 2L_8108173_SNP [dm6]	T	A	2.732e^-4	0.866	UTR_3_PRIME Bsg INTRON Bsg
3R	9639511	3R_9639511_SNP [dm3] 3R_13813789_SNP [dm6]	T	C	2.735e^-4	0.866	UTR_5_PRIME tal-AA UTR_3_PRIME tal-1A & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16637999	3L_16637999_SNP [dm3] 3L_16644899_SNP [dm6]	C	A	2.736e^-4	0.866	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25633717	3R_25633717_SNP [dm3] 3R_29807995_SNP [dm6]	G	A	2.747e^-4	0.866	SYNONYMOUS_CODING ca UPSTREAM ncd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14576180	3L_14576180_SNP [dm3] 3L_14583080_SNP [dm6]	A	C	2.748e^-4	0.866	DOWNSTREAM HGTX INTERGENIC	TF binding site BDTNP1_TFBS_tll
2L	9182364	2L_9182364_SNP [dm3] 2L_9182364_SNP [dm6]	C	T	2.752e^-4	0.866	INTRON tai	TF binding site mE1_TFBS_Trl
X	21045518	X_21045518_SNP [dm3] X_21174491_SNP [dm6]	T	C	2.765e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	19937705	2L_19937705_SNP [dm3] 2L_19937705_SNP [dm6]	C	A	2.773e^-4	0.866	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1717442	2L_1717442_SNP [dm3] 2L_1717442_SNP [dm6]	C	T	2.780e^-4	0.866	INTRON Rim2
2L	9399642	2L_9399642_SNP [dm3] 2L_9399642_SNP [dm6]	A	T	2.793e^-4	0.866	INTRON Shawl
2R	914364	2R_914364_SNP [dm3] 2R_5026859_SNP [dm6]	G	A	2.801e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	14588745	3R_14588745_SNP [dm3] 3R_18763023_SNP [dm6]	A	G	2.807e^-4	0.866	INTRON CG7720
3R	15116532	3R_15116532_SNP [dm3] 3R_19290810_SNP [dm6]	G	T	2.809e^-4	0.866	INTERGENIC
3R	6877994	3R_6877994_SNP [dm3] 3R_11052272_SNP [dm6]	T	A	2.812e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	3262040	3L_3262040_SNP [dm3] 3L_3262040_SNP [dm6]	A	G	2.814e^-4	0.866	INTRON ckd
X	21042142	X_21042142_SNP [dm3] X_21171115_SNP [dm6]	G	A	2.816e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	13650342	3L_13650342_SNP [dm3] 3L_13657242_SNP [dm6]	G	A	2.817e^-4	0.866	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3742953	3L_3742953_SNP [dm3] 3L_3742953_SNP [dm6]	C	T	2.820e^-4	0.866	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8156176	2L_8156176_INS [dm3] 2L_8156176_INS [dm6]	G	GG	2.822e^-4	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	20433070	2L_20433070_SNP [dm3] 2L_20433070_SNP [dm6]	G	C	2.825e^-4	0.866	INTRON CG31688
X	20782149	X_20782149_SNP [dm3] X_20911122_SNP [dm6]	A	C	2.828e^-4	0.866	INTRON shakB
X	12405635	X_12405635_SNP [dm3] X_12511602_SNP [dm6]	G	A	2.831e^-4	0.866	INTRON CG2556
2R	16123630	2R_16123630_SNP [dm3] 2R_20236125_SNP [dm6]	G	A	2.836e^-4	0.866	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
3L	5400388	3L_5400388_SNP [dm3] 3L_5407288_SNP [dm6]	T	C	2.839e^-4	0.866	INTERGENIC
X	14652395	X_14652395_SNP [dm3] X_14758362_SNP [dm6]	T	A	2.843e^-4	0.866	INTRON CG15890	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6333183	2R_6333183_SNP [dm3] 2R_10445678_SNP [dm6]	C	A	2.843e^-4	0.866	INTRON Galphao
3L	18834837	3L_18834837_SNP [dm3] 3L_18841737_SNP [dm6]	A	T	2.859e^-4	0.866	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3000526	2L_3000526_INS [dm3] 2L_3000526_INS [dm6]	G	GAGG	2.865e^-4	0.866	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23516249	3R_23516249_SNP [dm3] 3R_27690527_SNP [dm6]	T	A	2.867e^-4	0.866	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	5891191	3L_5891191_SNP [dm3] 3L_5898091_SNP [dm6]	G	T	2.868e^-4	0.866	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14409840	3R_14409840_SNP [dm3] 3R_18584118_SNP [dm6]	T	C	2.869e^-4	0.866	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24748568	3R_24748568_SNP [dm3] 3R_28922846_SNP [dm6]	G	T	2.873e^-4	0.866	UPSTREAM CG11828 DOWNSTREAM Doa INTERGENIC
X	21045414	X_21045414_SNP [dm3] X_21174387_SNP [dm6]	C	T	2.879e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	5269255	2L_5269255_SNP [dm3] 2L_5269255_SNP [dm6]	G	A	2.896e^-4	0.866	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
3L	10279818	3L_10279818_SNP [dm3] 3L_10286718_SNP [dm6]	G	T	2.898e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15772261	2L_15772261_SNP [dm3] 2L_15772261_SNP [dm6]	A	G	2.900e^-4	0.866	SYNONYMOUS_CODING CG31826
3R	9744008	3R_9744008_SNP [dm3] 3R_13918286_SNP [dm6]	A	C	2.902e^-4	0.866	INTERGENIC
X	16402128	X_16402128_SNP [dm3] X_16508095_SNP [dm6]	T	A	2.908e^-4	0.866	INTRON para
2R	16102244	2R_16102244_SNP [dm3] 2R_20214739_SNP [dm6]	C	T	2.912e^-4	0.866	INTERGENIC
2R	16123518	2R_16123518_SNP [dm3] 2R_20236013_SNP [dm6]	C	T	2.925e^-4	0.866	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
3R	7735927	3R_7735927_SNP [dm3] 3R_11910205_SNP [dm6]	C	T	2.930e^-4	0.866	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14256896	3R_14256896_SNP [dm3] 3R_18431174_SNP [dm6]	C	G	2.935e^-4	0.866	DOWNSTREAM fru INTRON fru
2R	8442316	2R_8442316_SNP [dm3] 2R_12554811_SNP [dm6]	G	C	2.944e^-4	0.866	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	25259715	3R_25259715_SNP [dm3] 3R_29433993_SNP [dm6]	A	G	2.954e^-4	0.866	INTRON Ptp99A
2R	18282835	2R_18282835_SNP [dm3] 2R_22395330_SNP [dm6]	A	T	2.960e^-4	0.866	INTRON babos
2R	8774490	2R_8774490_SNP [dm3] 2R_12886985_SNP [dm6]	C	T	2.961e^-4	0.866	UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16060834	2R_16060834_SNP [dm3] 2R_20173329_SNP [dm6]	A	C	2.963e^-4	0.866	INTERGENIC
2L	17261037	2L_17261037_SNP [dm3] 2L_17261037_SNP [dm6]	C	T	2.963e^-4	0.866	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8009037	2R_8009037_SNP [dm3] 2R_12121532_SNP [dm6]	A	G	2.974e^-4	0.866	INTERGENIC
3L	16637956	3L_16637956_SNP [dm3] 3L_16644856_SNP [dm6]	G	A	2.975e^-4	0.866	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5449702	X_5449702_SNP [dm3] X_5555669_SNP [dm6]	T	G	2.975e^-4	0.866	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
X	4896354	X_4896354_SNP [dm3] X_5002321_SNP [dm6]	C	A	2.978e^-4	0.866	INTRON CR44833	regulatory region REDfly_CRMs
3L	4349813	3L_4349813_SNP [dm3] 3L_4349813_SNP [dm6]	C	T	2.980e^-4	0.866	INTRON Cip4
3L	13375284	3L_13375284_SNP [dm3] 3L_13382184_SNP [dm6]	A	G	2.983e^-4	0.866	UPSTREAM CG14107 & 1 other INTERGENIC
X	10579649	X_10579649_SNP [dm3] X_10685616_SNP [dm6]	C	T	2.983e^-4	0.866	INTRON X11Lbeta
3R	19804406	3R_19804406_SNP [dm3] 3R_23978684_SNP [dm6]	C	A	2.983e^-4	0.866	INTRON CG31140
3L	5400398	3L_5400398_SNP [dm3] 3L_5407298_SNP [dm6]	C	T	2.991e^-4	0.866	INTERGENIC
3L	17346798	3L_17346798_SNP [dm3] 3L_17353698_SNP [dm6]	C	A	2.992e^-4	0.866	NON_SYNONYMOUS_CODING CG7692	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3497263	3L_3497263_SNP [dm3] 3L_3497263_SNP [dm6]	A	G	2.993e^-4	0.866	INTRON CG42324
3R	2702371	3R_2702371_INS [dm3] 3R_6876649_INS [dm6]	T	TCT	2.994e^-4	0.866	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3L	514437	3L_514437_SNP [dm3] 3L_514437_SNP [dm6]	C	A	2.997e^-4	0.866	INTRON klar
2L	3005613	2L_3005613_SNP [dm3] 2L_3005613_SNP [dm6]	A	C	3.002e^-4	0.866	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12525809	3L_12525809_SNP [dm3] 3L_12532709_SNP [dm6]	G	A	3.004e^-4	0.866	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
2L	5296969	2L_5296969_SNP [dm3] 2L_5296969_SNP [dm6]	G	C	3.013e^-4	0.866	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4201873	2R_4201873_SNP [dm3] 2R_8314368_SNP [dm6]	A	G	3.014e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10876848	3L_10876848_SNP [dm3] 3L_10883748_SNP [dm6]	T	A	3.020e^-4	0.866	DOWNSTREAM CG6404 & 1 other INTERGENIC
2L	17220887	2L_17220887_SNP [dm3] 2L_17220887_SNP [dm6]	A	G	3.023e^-4	0.866	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4107583	3R_4107583_SNP [dm3] 3R_8281861_SNP [dm6]	G	A	3.029e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	11498996	3R_11498996_SNP [dm3] 3R_15673274_SNP [dm6]	C	G	3.040e^-4	0.866	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19922776	2L_19922776_SNP [dm3] 2L_19922776_SNP [dm6]	T	A	3.041e^-4	0.866	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	19925920	2L_19925920_SNP [dm3] 2L_19925920_SNP [dm6]	G	A	3.044e^-4	0.866	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16581847	2R_16581847_SNP [dm3] 2R_20694342_SNP [dm6]	A	C	3.044e^-4	0.866	DOWNSTREAM CG13438 INTERGENIC
X	21045480	X_21045480_SNP [dm3] X_21174453_SNP [dm6]	T	C	3.044e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	10247798	3L_10247798_SNP [dm3] 3L_10254698_SNP [dm6]	G	A	3.045e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13171986	2R_13171986_SNP [dm3] 2R_17284481_SNP [dm6]	A	G	3.046e^-4	0.866	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19346749	3R_19346749_SNP [dm3] 3R_23521027_SNP [dm6]	G	A	3.051e^-4	0.866	SYNONYMOUS_CODING CG10177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11024058	2R_11024058_SNP [dm3] 2R_15136553_SNP [dm6]	T	G	3.053e^-4	0.866	INTRON chn	TF binding site mE1_TFBS_inv
2L	16448967	2L_16448967_SNP [dm3] 2L_16448967_SNP [dm6]	C	T	3.055e^-4	0.866	UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
3R	4346787	3R_4346787_SNP [dm3] 3R_8521065_SNP [dm6]	C	T	3.056e^-4	0.866	SYNONYMOUS_CODING CG11737 UPSTREAM CG31454
2L	1329666	2L_1329666_SNP [dm3] 2L_1329666_SNP [dm6]	T	G	3.071e^-4	0.866	SYNONYMOUS_CODING a5
3L	20826981	3L_20826981_SNP [dm3] 3L_20833881_SNP [dm6]	G	T	3.076e^-4	0.866	INTRON Pka-R1
3L	10437269	3L_10437269_SNP [dm3] 3L_10444169_SNP [dm6]	C	A	3.081e^-4	0.866	INTERGENIC
2L	8156449	2L_8156449_SNP [dm3] 2L_8156449_SNP [dm6]	T	C	3.086e^-4	0.866	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	11025217	2R_11025217_SNP [dm3] 2R_15137712_SNP [dm6]	C	T	3.089e^-4	0.866	INTRON chn
X	6154620	X_6154620_SNP [dm3] X_6260587_SNP [dm6]	G	A	3.091e^-4	0.866	UPSTREAM CG3781 INTRON schlank	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	9539724	3L_9539724_DEL [dm3] 3L_9546624_DEL [dm6]	GCGT	G	3.092e^-4	0.866	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	13171789	2R_13171789_SNP [dm3] 2R_17284284_SNP [dm6]	G	A	3.096e^-4	0.866	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10541106	2L_10541106_SNP [dm3] 2L_10541106_SNP [dm6]	A	C	3.101e^-4	0.866	INTERGENIC
3R	17029014	3R_17029014_SNP [dm3] 3R_21203292_SNP [dm6]	A	T	3.102e^-4	0.866	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24548199	3R_24548199_SNP [dm3] 3R_28722477_SNP [dm6]	A	G	3.114e^-4	0.866	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9645172	3L_9645172_SNP [dm3] 3L_9652072_SNP [dm6]	T	C	3.116e^-4	0.866	INTRON fry & 1 other
X	20340391	X_20340391_SNP [dm3] X_20469364_SNP [dm6]	A	G	3.127e^-4	0.866	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4125508	3L_4125508_SNP [dm3] 3L_4125508_SNP [dm6]	C	A	3.147e^-4	0.866	SPLICE_SITE_REGION ens INTRON ens	TF binding site mE1_TFBS_chinmo
3R	7345702	3R_7345702_SNP [dm3] 3R_11519980_SNP [dm6]	T	A	3.148e^-4	0.866	INTERGENIC
2L	5648734	2L_5648734_SNP [dm3] 2L_5648734_SNP [dm6]	G	A	3.164e^-4	0.866	INTRON CG31646
3R	9744009	3R_9744009_SNP [dm3] 3R_13918287_SNP [dm6]	T	A	3.164e^-4	0.866	INTERGENIC
3L	9129069	3L_9129069_SNP [dm3] 3L_9135969_SNP [dm6]	G	A	3.164e^-4	0.866	DOWNSTREAM Dhpr INTRON Use1	TF binding site BDTNP1_TFBS_dl
2R	7447030	2R_7447030_SNP [dm3] 2R_11559525_SNP [dm6]	A	T	3.166e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13185359	3L_13185359_SNP [dm3] 3L_13192259_SNP [dm6]	T	G	3.167e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13185360	3L_13185360_SNP [dm3] 3L_13192260_SNP [dm6]	A	T	3.167e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
X	10588489	X_10588489_SNP [dm3] X_10694456_SNP [dm6]	G	T	3.167e^-4	0.866	INTRON X11Lbeta
3R	7753622	3R_7753622_SNP [dm3] 3R_11927900_SNP [dm6]	T	A	3.168e^-4	0.866	INTRON Cad87A
2L	6457138	2L_6457138_SNP [dm3] 2L_6457138_SNP [dm6]	T	A	3.176e^-4	0.866	INTRON frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9217520	2L_9217520_SNP [dm3] 2L_9217520_SNP [dm6]	C	A	3.183e^-4	0.866	INTRON tai
X	19339436	X_19339436_SNP [dm3] X_19445403_SNP [dm6]	T	C	3.186e^-4	0.866	INTRON kek5
3R	14557139	3R_14557139_DEL [dm3] 3R_18731417_DEL [dm6]	TAT	T	3.186e^-4	0.866	UTR_3_PRIME Cha DOWNSTREAM Cha
3L	10260911	3L_10260911_SNP [dm3] 3L_10267811_SNP [dm6]	C	A	3.187e^-4	0.866	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2R	3565121	2R_3565121_SNP [dm3] 2R_7677616_SNP [dm6]	G	A	3.189e^-4	0.866	UTR_3_PRIME CG1399
3L	13185039	3L_13185039_SNP [dm3] 3L_13191939_SNP [dm6]	C	A	3.190e^-4	0.866	INTERGENIC
2L	15875603	2L_15875603_SNP [dm3] 2L_15875603_SNP [dm6]	A	C	3.193e^-4	0.866	INTERGENIC
X	6678149	X_6678149_SNP [dm3] X_6784116_SNP [dm6]	C	T	3.197e^-4	0.866	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4032187	2L_4032187_SNP [dm3] 2L_4032187_SNP [dm6]	A	T	3.212e^-4	0.866	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1949195	3L_1949195_SNP [dm3] 3L_1949195_SNP [dm6]	C	T	3.233e^-4	0.866	SYNONYMOUS_CODING Cnb
2L	12162742	2L_12162742_SNP [dm3] 2L_12162742_SNP [dm6]	T	C	3.241e^-4	0.866	SPLICE_SITE_REGION CG31760 SYNONYMOUS_CODING CG31760 DOWNSTREAM CG31861
3L	14114122	3L_14114122_SNP [dm3] 3L_14121022_SNP [dm6]	C	T	3.244e^-4	0.866	INTRON Sox21b
3L	12525810	3L_12525810_SNP [dm3] 3L_12532710_SNP [dm6]	A	T	3.255e^-4	0.866	NON_SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
3L	3842532	3L_3842532_SNP [dm3] 3L_3842532_SNP [dm6]	A	T	3.255e^-4	0.866	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12766568	X_12766568_SNP [dm3] X_12872535_SNP [dm6]	T	A	3.256e^-4	0.866	INTRON Pde9
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	3.258e^-4	0.866	INTRON CG45263
3R	25887038	3R_25887038_SNP [dm3] 3R_30061316_SNP [dm6]	A	G	3.259e^-4	0.866	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5448830	2R_5448830_SNP [dm3] 2R_9561325_SNP [dm6]	C	A	3.261e^-4	0.866	UPSTREAM CG1809 DOWNSTREAM Or45b EXON CR45281
X	5251757	X_5251757_SNP [dm3] X_5357724_SNP [dm6]	C	T	3.279e^-4	0.866	UPSTREAM SK INTRON SK
2R	5154764	2R_5154764_SNP [dm3] 2R_9267259_SNP [dm6]	G	A	3.282e^-4	0.866	INTRON Pkn
2R	11483481	2R_11483481_SNP [dm3] 2R_15595976_SNP [dm6]	T	C	3.282e^-4	0.866	INTERGENIC
3R	21855827	3R_21855827_SNP [dm3] 3R_26030105_SNP [dm6]	A	T	3.296e^-4	0.866	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21045458	X_21045458_SNP [dm3] X_21174431_SNP [dm6]	G	A	3.301e^-4	0.866	INTERGENIC	transposable element FlyBase
2R	17881904	2R_17881904_SNP [dm3] 2R_21994399_SNP [dm6]	C	T	3.302e^-4	0.866	INTRON CG34370
2R	8733025	2R_8733025_SNP [dm3] 2R_12845520_SNP [dm6]	C	T	3.307e^-4	0.866	DOWNSTREAM CG17575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16267643	X_16267643_SNP [dm3] X_16373610_SNP [dm6]	A	T	3.314e^-4	0.866	UPSTREAM Fur2 INTRON Fur2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	13366964	3L_13366964_SNP [dm3] 3L_13373864_SNP [dm6]	C	T	3.317e^-4	0.866	INTERGENIC
2R	17232136	2R_17232136_INS [dm3] 2R_21344631_INS [dm6]	A	ACACATGTTC	3.319e^-4	0.866	INTRON CG15666
3L	13179510	3L_13179510_SNP [dm3] 3L_13186410_SNP [dm6]	G	A	3.321e^-4	0.866	INTERGENIC
3L	10280025	3L_10280025_SNP [dm3] 3L_10286925_SNP [dm6]	T	C	3.322e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10147611	2L_10147611_SNP [dm3] 2L_10147611_SNP [dm6]	A	T	3.323e^-4	0.866	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
3L	17769983	3L_17769983_SNP [dm3] 3L_17776883_SNP [dm6]	C	T	3.324e^-4	0.866	INTERGENIC
3L	10437289	3L_10437289_SNP [dm3] 3L_10444189_SNP [dm6]	T	G	3.326e^-4	0.866	INTERGENIC
X	5545228	X_5545228_SNP [dm3] X_5651195_SNP [dm6]	C	A	3.331e^-4	0.866	UTR_3_PRIME CG42265
3R	7741609	3R_7741609_SNP [dm3] 3R_11915887_SNP [dm6]	T	A	3.333e^-4	0.866	INTRON Cad87A
3L	9887126	3L_9887126_SNP [dm3] 3L_9894026_SNP [dm6]	T	C	3.338e^-4	0.866	NON_SYNONYMOUS_CODING CG14164 UTR_5_PRIME CG6709 UPSTREAM CG6709 DOWNSTREAM CalpB & 1 other
2R	18876148	2R_18876148_SNP [dm3] 2R_22988625_SNP [dm6]	C	T	3.342e^-4	0.866	INTRON twi
2L	7013233	2L_7013233_DEL [dm3] 2L_7013233_DEL [dm6]	TATGAT	T	3.345e^-4	0.866	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	2213191	X_2213191_SNP [dm3] X_2319158_SNP [dm6]	C	T	3.347e^-4	0.866	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15486024	3L_15486024_SNP [dm3] 3L_15492924_SNP [dm6]	G	C	3.355e^-4	0.866	DOWNSTREAM CG12355 INTERGENIC
3R	20511045	3R_20511045_SNP [dm3] 3R_24685323_SNP [dm6]	A	T	3.358e^-4	0.866	INTRON slo
2R	5154737	2R_5154737_SNP [dm3] 2R_9267232_SNP [dm6]	T	A	3.367e^-4	0.866	INTRON Pkn
3R	11324245	3R_11324245_SNP [dm3] 3R_15498523_SNP [dm6]	A	C	3.371e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4898555	2L_4898555_SNP [dm3] 2L_4898555_SNP [dm6]	C	A	3.375e^-4	0.866	INTRON CG3036
2R	18292296	2R_18292296_SNP [dm3] 2R_22404791_SNP [dm6]	A	G	3.375e^-4	0.866	INTRON CG6044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6456898	2L_6456898_SNP [dm3] 2L_6456898_SNP [dm6]	G	A	3.379e^-4	0.866	UPSTREAM retm INTRON frj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10613674	X_10613674_SNP [dm3] X_10719641_SNP [dm6]	G	A	3.387e^-4	0.866	INTRON CG32676
2L	13809032	2L_13809032_SNP [dm3] 2L_13809032_SNP [dm6]	T	C	3.389e^-4	0.866	UTR_3_PRIME adat INTRON CAH1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	12247376	3L_12247376_SNP [dm3] 3L_12254276_SNP [dm6]	C	T	3.392e^-4	0.866	INTRON app
2R	12616607	2R_12616607_SNP [dm3] 2R_16729102_SNP [dm6]	T	C	3.396e^-4	0.866	INTRON CG30463
3R	14907219	3R_14907219_SNP [dm3] 3R_19081497_SNP [dm6]	C	T	3.397e^-4	0.866	INTRON cdi
2R	9257161	2R_9257161_SNP [dm3] 2R_13369656_SNP [dm6]	C	A	3.400e^-4	0.866	INTERGENIC
3R	5359110	3R_5359110_SNP [dm3] 3R_9533388_SNP [dm6]	C	G	3.404e^-4	0.866	UPSTREAM by INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	18282852	2R_18282852_SNP [dm3] 2R_22395347_SNP [dm6]	T	A	3.412e^-4	0.866	INTRON babos
3L	9656571	3L_9656571_SNP [dm3] 3L_9663471_SNP [dm6]	G	C	3.418e^-4	0.866	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3L	18174261	3L_18174261_SNP [dm3] 3L_18181161_SNP [dm6]	T	G	3.419e^-4	0.866	INTRON W
3L	14114126	3L_14114126_SNP [dm3] 3L_14121026_SNP [dm6]	A	C	3.425e^-4	0.866	INTRON Sox21b
3R	7753585	3R_7753585_SNP [dm3] 3R_11927863_SNP [dm6]	C	T	3.430e^-4	0.866	INTRON Cad87A
2L	2537744	2L_2537744_SNP [dm3] 2L_2537744_SNP [dm6]	T	C	3.432e^-4	0.866	INTERGENIC
3L	12641185	3L_12641185_SNP [dm3] 3L_12648085_SNP [dm6]	G	A	3.437e^-4	0.866	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11296500	3L_11296500_SNP [dm3] 3L_11303400_SNP [dm6]	T	C	3.441e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9742586	3L_9742586_SNP [dm3] 3L_9749486_SNP [dm6]	T	C	3.450e^-4	0.866	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2944201	2L_2944201_SNP [dm3] 2L_2944201_SNP [dm6]	T	C	3.450e^-4	0.866	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	17346044	3L_17346044_SNP [dm3] 3L_17352944_SNP [dm6]	T	G	3.452e^-4	0.866	UPSTREAM CG7692 INTRON CG7692	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17719055	2R_17719055_SNP [dm3] 2R_21831550_SNP [dm6]	A	G	3.460e^-4	0.866	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
3R	4024877	3R_4024877_SNP [dm3] 3R_8199155_SNP [dm6]	C	A	3.469e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	14114108	3L_14114108_SNP [dm3] 3L_14121008_SNP [dm6]	T	C	3.469e^-4	0.866	INTRON Sox21b
3L	17767396	3L_17767396_SNP [dm3] 3L_17774296_SNP [dm6]	A	G	3.472e^-4	0.866	INTERGENIC
2L	17516107	2L_17516107_SNP [dm3] 2L_17516107_SNP [dm6]	A	T	3.484e^-4	0.866	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
3L	15073271	3L_15073271_SNP [dm3] 3L_15080171_SNP [dm6]	C	T	3.488e^-4	0.866	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	15073274	3L_15073274_SNP [dm3] 3L_15080174_SNP [dm6]	C	T	3.488e^-4	0.866	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17139238	2R_17139238_SNP [dm3] 2R_21251733_SNP [dm6]	A	T	3.489e^-4	0.866	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
3L	13030104	3L_13030104_SNP [dm3] 3L_13037004_SNP [dm6]	T	A	3.511e^-4	0.866	START_GAINED SRm160 UTR_5_PRIME SRm160 DOWNSTREAM CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	13207027	3L_13207027_SNP [dm3] 3L_13213927_SNP [dm6]	C	A	3.511e^-4	0.866	UPSTREAM tRNA:CR32127 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15461711	2L_15461711_SNP [dm3] 2L_15461711_SNP [dm6]	T	A	3.512e^-4	0.866	INTERGENIC
2L	7057436	2L_7057436_SNP [dm3] 2L_7057436_SNP [dm6]	A	G	3.522e^-4	0.866	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2697842	2L_2697842_SNP [dm3] 2L_2697842_SNP [dm6]	A	G	3.527e^-4	0.866	INTRON CG31690
3R	14591046	3R_14591046_SNP [dm3] 3R_18765324_SNP [dm6]	C	T	3.529e^-4	0.866	INTRON CG7720
2R	7371258	2R_7371258_SNP [dm3] 2R_11483753_SNP [dm6]	A	G	3.535e^-4	0.866	INTRON inv
3L	11875705	3L_11875705_SNP [dm3] 3L_11882605_SNP [dm6]	A	C	3.545e^-4	0.866	SYNONYMOUS_CODING CCDC151 INTRON CG44837
3R	14409556	3R_14409556_SNP [dm3] 3R_18583834_SNP [dm6]	G	A	3.546e^-4	0.866	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14256822	3R_14256822_SNP [dm3] 3R_18431100_SNP [dm6]	C	A	3.558e^-4	0.866	DOWNSTREAM fru INTRON fru
3R	14557053	3R_14557053_SNP [dm3] 3R_18731331_SNP [dm6]	T	C	3.561e^-4	0.866	UTR_3_PRIME Cha DOWNSTREAM Cha
3L	11374044	3L_11374044_SNP [dm3] 3L_11380944_SNP [dm6]	C	T	3.564e^-4	0.866	INTERGENIC
X	14889300	X_14889300_SNP [dm3] X_14995267_SNP [dm6]	G	A	3.568e^-4	0.866	INTRON eag
3L	17867156	3L_17867156_SNP [dm3] 3L_17874056_SNP [dm6]	C	T	3.574e^-4	0.866	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8399639	2L_8399639_SNP [dm3] 2L_8399639_SNP [dm6]	C	T	3.575e^-4	0.866	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14206345	2L_14206345_SNP [dm3] 2L_14206345_SNP [dm6]	A	G	3.575e^-4	0.866	INTRON Dyrk2
2L	8897112	2L_8897112_SNP [dm3] 2L_8897112_SNP [dm6]	G	A	3.580e^-4	0.866	INTERGENIC
3R	15561269	3R_15561269_SNP [dm3] 3R_19735547_SNP [dm6]	G	T	3.588e^-4	0.866	INTRON GluClalpha
3L	14114139	3L_14114139_SNP [dm3] 3L_14121039_SNP [dm6]	T	G	3.591e^-4	0.866	INTRON Sox21b
3R	11352201	3R_11352201_SNP [dm3] 3R_15526479_SNP [dm6]	A	C	3.591e^-4	0.866	INTERGENIC
2R	14148684	2R_14148684_SNP [dm3] 2R_18261179_SNP [dm6]	C	T	3.595e^-4	0.866	INTERGENIC
3L	10999234	3L_10999234_SNP [dm3] 3L_11006134_SNP [dm6]	T	G	3.596e^-4	0.866	INTRON klu
3L	19284263	3L_19284263_SNP [dm3] 3L_19291163_SNP [dm6]	G	T	3.600e^-4	0.866	INTRON Gbs-76A
3R	6992787	3R_6992787_SNP [dm3] 3R_11167065_SNP [dm6]	G	C	3.601e^-4	0.866	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
2L	14206290	2L_14206290_SNP [dm3] 2L_14206290_SNP [dm6]	C	T	3.613e^-4	0.866	INTRON Dyrk2
3L	10246215	3L_10246215_SNP [dm3] 3L_10253115_SNP [dm6]	T	G	3.616e^-4	0.866	INTERGENIC
2R	19505928	2R_19505928_DEL [dm3] 2R_23618405_DEL [dm6]	ACCAAATA	G	3.625e^-4	0.866	INTERGENIC
2L	2697855	2L_2697855_SNP [dm3] 2L_2697855_SNP [dm6]	C	G	3.632e^-4	0.866	INTRON CG31690
3R	3974769	3R_3974769_DEL [dm3] 3R_8149047_DEL [dm6]	GAAAAAGTCTTCTTAATTAT...	G	3.633e^-4	0.866	INTRON grn
3L	9793305	3L_9793305_SNP [dm3] 3L_9800205_SNP [dm6]	T	C	3.637e^-4	0.866	SYNONYMOUS_CODING Ilp2 INTRON CG32052
2R	18864189	2R_18864189_SNP [dm3] 2R_22976666_SNP [dm6]	A	T	3.639e^-4	0.866	INTERGENIC
X	12667052	X_12667052_SNP [dm3] X_12773019_SNP [dm6]	C	T	3.647e^-4	0.866	UTR_3_PRIME CG32647 DOWNSTREAM CG32647 & 1 other
3R	16448008	3R_16448008_SNP [dm3] 3R_20622286_SNP [dm6]	A	C	3.647e^-4	0.866	UTR_5_PRIME H INTRON H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9792819	3L_9792819_SNP [dm3] 3L_9799719_SNP [dm6]	T	A	3.652e^-4	0.866	UTR_5_PRIME Ilp2 DOWNSTREAM Ilp1 INTRON CG32052
3R	20860797	3R_20860797_SNP [dm3] 3R_25035075_SNP [dm6]	A	C	3.661e^-4	0.866	SYNONYMOUS_CODING CG6422
2R	19505926	2R_19505926_SNP [dm3] 2R_23618403_SNP [dm6]	A	C	3.667e^-4	0.866	INTERGENIC
3L	6927914	3L_6927914_SNP [dm3] 3L_6934814_SNP [dm6]	G	T	3.668e^-4	0.866	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
3L	12212854	3L_12212854_SNP [dm3] 3L_12219754_SNP [dm6]	G	C	3.669e^-4	0.866	INTRON app
X	19339430	X_19339430_SNP [dm3] X_19445397_SNP [dm6]	T	G	3.677e^-4	0.866	INTRON kek5
2L	9224897	2L_9224897_SNP [dm3] 2L_9224897_SNP [dm6]	T	G	3.685e^-4	0.866	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	5338499	3R_5338499_SNP [dm3] 3R_9512777_SNP [dm6]	G	C	3.697e^-4	0.866	UPSTREAM Rlb1 INTRON Ras85D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27496007	3R_27496007_SNP [dm3] 3R_31670285_SNP [dm6]	C	T	3.710e^-4	0.866	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	15461686	2L_15461686_SNP [dm3] 2L_15461686_SNP [dm6]	A	G	3.721e^-4	0.866	INTERGENIC
2L	8897280	2L_8897280_SNP [dm3] 2L_8897280_SNP [dm6]	T	C	3.735e^-4	0.866	INTERGENIC
3L	9646475	3L_9646475_SNP [dm3] 3L_9653375_SNP [dm6]	C	T	3.743e^-4	0.866	INTRON fry & 1 other
3L	14114127	3L_14114127_SNP [dm3] 3L_14121027_SNP [dm6]	G	T	3.744e^-4	0.866	INTRON Sox21b
2R	19639595	2R_19639595_SNP [dm3] 2R_23752072_SNP [dm6]	C	T	3.744e^-4	0.866	NON_SYNONYMOUS_CODING CG11300 UPSTREAM CG5532 DOWNSTREAM CG12491	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	8663388	X_8663388_SNP [dm3] X_8769355_SNP [dm6]	A	G	3.752e^-4	0.866	INTRON Lim1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14114308	3L_14114308_INS [dm3] 3L_14121208_INS [dm6]	T	TGAAACATCT	3.755e^-4	0.866	INTRON Sox21b
3L	9539747	3L_9539747_SNP [dm3] 3L_9546647_SNP [dm6]	A	G	3.761e^-4	0.866	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	4922323	2R_4922323_SNP [dm3] 2R_9034818_SNP [dm6]	C	T	3.761e^-4	0.866	INTERGENIC
3R	2711332	3R_2711332_SNP [dm3] 3R_6885610_SNP [dm6]	G	T	3.764e^-4	0.866	UPSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23123201	3R_23123201_SNP [dm3] 3R_27297479_SNP [dm6]	T	C	3.771e^-4	0.866	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
2R	7079104	2R_7079104_SNP [dm3] 2R_11191599_SNP [dm6]	G	T	3.772e^-4	0.866	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15499714	X_15499714_SNP [dm3] X_15605681_SNP [dm6]	T	C	3.775e^-4	0.866	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	18244682	3L_18244682_SNP [dm3] 3L_18251582_SNP [dm6]	T	C	3.779e^-4	0.866	UPSTREAM CheA75a INTERGENIC
2R	19827151	2R_19827151_SNP [dm3] 2R_23939628_SNP [dm6]	C	G	3.789e^-4	0.866	NON_SYNONYMOUS_CODING CG3735 UPSTREAM Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13622489	2R_13622489_SNP [dm3] 2R_17734984_SNP [dm6]	G	A	3.794e^-4	0.866	UTR_3_PRIME CG6406 DOWNSTREAM CG34195
X	16429611	X_16429611_SNP [dm3] X_16535578_SNP [dm6]	C	T	3.801e^-4	0.866	INTERGENIC
3L	9645324	3L_9645324_SNP [dm3] 3L_9652224_SNP [dm6]	C	G	3.802e^-4	0.866	INTRON fry & 1 other
3L	9645340	3L_9645340_SNP [dm3] 3L_9652240_SNP [dm6]	G	A	3.802e^-4	0.866	INTRON fry & 1 other
3L	11625264	3L_11625264_SNP [dm3] 3L_11632164_SNP [dm6]	A	G	3.802e^-4	0.866	DOWNSTREAM CR45158 INTRON CG32091
2L	5268157	2L_5268157_SNP [dm3] 2L_5268157_SNP [dm6]	T	C	3.802e^-4	0.866	SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
3L	5400399	3L_5400399_SNP [dm3] 3L_5407299_SNP [dm6]	A	T	3.809e^-4	0.866	INTERGENIC
3L	5400402	3L_5400402_SNP [dm3] 3L_5407302_SNP [dm6]	C	T	3.809e^-4	0.866	INTERGENIC
3L	13091784	3L_13091784_SNP [dm3] 3L_13098684_SNP [dm6]	C	A	3.810e^-4	0.866	INTERGENIC
2R	7307785	2R_7307785_SNP [dm3] 2R_11420280_SNP [dm6]	T	G	3.827e^-4	0.866	INTRON Drip
X	14286355	X_14286355_SNP [dm3] X_14392322_SNP [dm6]	A	G	3.831e^-4	0.866	INTRON dpr8
3L	18064306	3L_18064306_SNP [dm3] 3L_18071206_SNP [dm6]	T	C	3.840e^-4	0.866	SYNONYMOUS_CODING CG44005
2R	13686625	2R_13686625_SNP [dm3] 2R_17799120_SNP [dm6]	T	A	3.845e^-4	0.866	UTR_3_PRIME Dhit DOWNSTREAM Dhit
2R	15774994	2R_15774994_SNP [dm3] 2R_19887489_SNP [dm6]	T	A	3.847e^-4	0.866	INTERGENIC
X	2313824	X_2313824_SNP [dm3] X_2419791_SNP [dm6]	T	A	3.848e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	8268497	2L_8268497_SNP [dm3] 2L_8268497_SNP [dm6]	G	T	3.849e^-4	0.866	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12661953	2L_12661953_SNP [dm3] 2L_12661953_SNP [dm6]	A	G	3.852e^-4	0.866	INTRON pdm2	TF binding site mE1_TFBS_Kr
3L	11619005	3L_11619005_SNP [dm3] 3L_11625905_SNP [dm6]	A	T	3.856e^-4	0.866	UPSTREAM PCID2 INTRON CG6083	TF binding site BDTNP1_TFBS_dl
3L	10757577	3L_10757577_SNP [dm3] 3L_10764477_SNP [dm6]	G	T	3.871e^-4	0.866	INTERGENIC
2L	10049660	2L_10049660_SNP [dm3] 2L_10049660_SNP [dm6]	A	T	3.879e^-4	0.866	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1185786	2L_1185786_SNP [dm3] 2L_1185786_SNP [dm6]	A	C	3.882e^-4	0.866	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	7330815	2R_7330815_SNP [dm3] 2R_11443310_SNP [dm6]	T	A	3.901e^-4	0.866	INTRON qvr
2R	17221075	2R_17221075_SNP [dm3] 2R_21333570_SNP [dm6]	C	T	3.904e^-4	0.866	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
X	1795518	X_1795518_SNP [dm3] X_1901485_SNP [dm6]	T	G	3.906e^-4	0.866	NON_SYNONYMOUS_CODING CG32803 UTR_5_PRIME CG32803 UPSTREAM arm & 1 other DOWNSTREAM CG32801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	14259861	3R_14259861_SNP [dm3] 3R_18434139_SNP [dm6]	C	T	3.912e^-4	0.866	INTRON fru	TF binding site mE1_TFBS_cad
3L	16319065	3L_16319065_SNP [dm3] 3L_16325965_SNP [dm6]	C	A	3.913e^-4	0.866	UTR_5_PRIME CG13040 UPSTREAM CG13040 DOWNSTREAM CG13039
3L	17838812	3L_17838812_SNP [dm3] 3L_17845712_SNP [dm6]	C	T	3.913e^-4	0.866	INTRON MED19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6927918	3L_6927918_SNP [dm3] 3L_6934818_SNP [dm6]	G	A	3.919e^-4	0.866	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	3.924e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12092308	3L_12092308_SNP [dm3] 3L_12099208_SNP [dm6]	T	G	3.928e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19804602	3R_19804602_SNP [dm3] 3R_23978880_SNP [dm6]	C	T	3.933e^-4	0.866	INTRON CG31140
3R	14560130	3R_14560130_SNP [dm3] 3R_18734408_SNP [dm6]	A	G	3.935e^-4	0.866	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17954001	2R_17954001_SNP [dm3] 2R_22066496_SNP [dm6]	A	G	3.936e^-4	0.866	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5299769	2R_5299769_DEL [dm3] 2R_9412264_DEL [dm6]	AA	A	3.936e^-4	0.866	INTRON wun
3R	17154517	3R_17154517_DEL [dm3] 3R_21328795_DEL [dm6]	GGACTGGATG	G	3.937e^-4	0.866	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3R	7023699	3R_7023699_SNP [dm3] 3R_11197977_SNP [dm6]	T	G	3.947e^-4	0.866	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19512516	2R_19512516_SNP [dm3] 2R_23624993_SNP [dm6]	A	G	3.947e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21045455	X_21045455_SNP [dm3] X_21174428_SNP [dm6]	T	A	3.948e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	3776659	3R_3776659_SNP [dm3] 3R_7950937_SNP [dm6]	G	C	3.955e^-4	0.866	INTRON dsx
3L	20791877	3L_20791877_SNP [dm3] 3L_20798777_SNP [dm6]	C	T	3.956e^-4	0.866	UTR_5_PRIME CG4365 UPSTREAM CG3698 INTRON CG4365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20866740	3R_20866740_SNP [dm3] 3R_25041018_SNP [dm6]	G	T	3.962e^-4	0.866	DOWNSTREAM 5PtaseI & 1 other INTRON 5PtaseI
3R	7337446	3R_7337446_SNP [dm3] 3R_11511724_SNP [dm6]	A	C	3.969e^-4	0.866	INTERGENIC
2L	6695258	2L_6695258_SNP [dm3] 2L_6695258_SNP [dm6]	A	G	3.969e^-4	0.866	INTRON Tsp
3R	23290320	3R_23290320_SNP [dm3] 3R_27464598_SNP [dm6]	T	C	3.980e^-4	0.866	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16318387	3L_16318387_SNP [dm3] 3L_16325287_SNP [dm6]	C	T	3.984e^-4	0.866	SYNONYMOUS_CODING CG13040 DOWNSTREAM CG13059 & 1 other
2L	13810371	2L_13810371_SNP [dm3] 2L_13810371_SNP [dm6]	G	C	3.989e^-4	0.866	NON_SYNONYMOUS_CODING adat DOWNSTREAM CAH1	TF binding site mE1_TFBS_sens
3L	11046719	3L_11046719_SNP [dm3] 3L_11053619_SNP [dm6]	G	T	3.989e^-4	0.866	UPSTREAM CG7888 INTERGENIC
3L	13367322	3L_13367322_SNP [dm3] 3L_13374222_SNP [dm6]	C	A	3.990e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5359054	2R_5359054_SNP [dm3] 2R_9471549_SNP [dm6]	C	T	3.992e^-4	0.866	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14065499	2L_14065499_SNP [dm3] 2L_14065499_SNP [dm6]	T	C	3.994e^-4	0.866	INTRON nAChRalpha5
3L	2210668	3L_2210668_SNP [dm3] 3L_2210668_SNP [dm6]	G	A	3.995e^-4	0.866	DOWNSTREAM CG15878 INTERGENIC
2R	8353166	2R_8353166_SNP [dm3] 2R_12465661_SNP [dm6]	T	A	4.000e^-4	0.866	DOWNSTREAM dgt5 & 1 other INTERGENIC
X	12557299	X_12557299_SNP [dm3] X_12663266_SNP [dm6]	G	A	4.002e^-4	0.866	INTRON Tis11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14114196	3L_14114196_SNP [dm3] 3L_14121096_SNP [dm6]	G	T	4.007e^-4	0.866	INTRON Sox21b
2L	1716390	2L_1716390_SNP [dm3] 2L_1716390_SNP [dm6]	A	T	4.012e^-4	0.866	UTR_3_PRIME Rim2 UPSTREAM frtz DOWNSTREAM Rim2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9859747	3R_9859747_SNP [dm3] 3R_14034025_SNP [dm6]	C	T	4.017e^-4	0.866	SYNONYMOUS_CODING CG3061 DOWNSTREAM CG9922	TF binding site mE1_TFBS_sens
2R	6325362	2R_6325362_INS [dm3] 2R_10437857_INS [dm6]	A	AA	4.026e^-4	0.866	UPSTREAM Galphao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19114711	3R_19114711_SNP [dm3] 3R_23288989_SNP [dm6]	A	C	4.028e^-4	0.866	SYNONYMOUS_CODING CG4434 UPSTREAM CG17083	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12148073	2R_12148073_INS [dm3] 2R_16260568_INS [dm6]	G	GA	4.030e^-4	0.866	UPSTREAM CngA INTERGENIC
3L	13650526	3L_13650526_SNP [dm3] 3L_13657426_SNP [dm6]	A	G	4.033e^-4	0.866	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9645110	3L_9645110_SNP [dm3] 3L_9652010_SNP [dm6]	T	A	4.042e^-4	0.866	INTRON fry & 1 other
3R	24748520	3R_24748520_DEL [dm3] 3R_28922798_DEL [dm6]	TTAATACGGTAATGACGGTA...	T	4.043e^-4	0.866	UPSTREAM CG11828 DOWNSTREAM Doa INTERGENIC
2R	9256442	2R_9256442_SNP [dm3] 2R_13368937_SNP [dm6]	T	A	4.047e^-4	0.866	INTERGENIC
2R	19597786	2R_19597786_SNP [dm3] 2R_23710263_SNP [dm6]	A	T	4.048e^-4	0.866	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8608543	2L_8608543_SNP [dm3] 2L_8608543_SNP [dm6]	T	G	4.058e^-4	0.866	INTRON Sema-1a
2R	17805731	2R_17805731_SNP [dm3] 2R_21918226_SNP [dm6]	A	G	4.083e^-4	0.866	INTRON Fili
2R	4834843	2R_4834843_SNP [dm3] 2R_8947338_SNP [dm6]	A	G	4.084e^-4	0.866	UTR_5_PRIME CG8230 DOWNSTREAM CG33199 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9900836	3R_9900836_SNP [dm3] 3R_14075114_SNP [dm6]	C	T	4.085e^-4	0.866	INTRON foxo
2L	8604352	2L_8604352_SNP [dm3] 2L_8604352_SNP [dm6]	A	T	4.086e^-4	0.866	INTRON Sema-1a
3R	18622350	3R_18622350_SNP [dm3] 3R_22796628_SNP [dm6]	G	C	4.093e^-4	0.866	INTERGENIC
3R	14442879	3R_14442879_SNP [dm3] 3R_18617157_SNP [dm6]	C	T	4.120e^-4	0.866	SYNONYMOUS_CODING CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19505757	2R_19505757_SNP [dm3] 2R_23618234_SNP [dm6]	T	A	4.124e^-4	0.866	INTERGENIC
3L	10755533	3L_10755533_SNP [dm3] 3L_10762433_SNP [dm6]	A	C	4.135e^-4	0.866	INTERGENIC
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	4.139e^-4	0.866	INTRON stan
X	21041928	X_21041928_SNP [dm3] X_21170901_SNP [dm6]	T	A	4.152e^-4	0.866	INTERGENIC
3L	6929955	3L_6929955_SNP [dm3] 3L_6936855_SNP [dm6]	T	G	4.154e^-4	0.866	UPSTREAM CR45415 EXON CR45414	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18282866	2R_18282866_SNP [dm3] 2R_22395361_SNP [dm6]	C	T	4.155e^-4	0.866	INTRON babos
2R	6326638	2R_6326638_SNP [dm3] 2R_10439133_SNP [dm6]	C	A	4.156e^-4	0.866	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24701664	3R_24701664_SNP [dm3] 3R_28875942_SNP [dm6]	G	C	4.161e^-4	0.866	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15116675	3R_15116675_SNP [dm3] 3R_19290953_SNP [dm6]	T	G	4.174e^-4	0.866	INTERGENIC
2R	11022919	2R_11022919_SNP [dm3] 2R_15135414_SNP [dm6]	G	T	4.177e^-4	0.866	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19114742	3R_19114742_SNP [dm3] 3R_23289020_SNP [dm6]	G	C	4.179e^-4	0.866	UPSTREAM CG17083 INTRON CG4434	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14065497	2L_14065497_SNP [dm3] 2L_14065497_SNP [dm6]	G	C	4.179e^-4	0.866	INTRON nAChRalpha5
2R	18475352	2R_18475352_SNP [dm3] 2R_22587847_SNP [dm6]	G	C	4.183e^-4	0.866	INTRON dnr1
X	18610303	X_18610303_SNP [dm3] X_18716270_SNP [dm6]	G	A	4.185e^-4	0.866	INTRON CCKLR-17D1
2R	19642374	2R_19642374_SNP [dm3] 2R_23754851_SNP [dm6]	T	A	4.186e^-4	0.866	INTRON CG9850
2L	8837448	2L_8837448_SNP [dm3] 2L_8837448_SNP [dm6]	G	T	4.192e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7589260	2L_7589260_SNP [dm3] 2L_7589260_SNP [dm6]	A	G	4.193e^-4	0.866	INTERGENIC
2L	16933035	2L_16933035_SNP [dm3] 2L_16933035_SNP [dm6]	A	G	4.195e^-4	0.866	INTERGENIC
3R	19564701	3R_19564701_SNP [dm3] 3R_23738979_SNP [dm6]	C	T	4.195e^-4	0.866	INTRON Hmgcr
2R	7307775	2R_7307775_SNP [dm3] 2R_11420270_SNP [dm6]	G	A	4.200e^-4	0.866	INTRON Drip
2L	5568059	2L_5568059_DEL [dm3] 2L_5568059_DEL [dm6]	GGGCACG	G	4.201e^-4	0.866	INTERGENIC
X	21127050	X_21127050_SNP [dm3] X_21256023_SNP [dm6]	C	T	4.203e^-4	0.866	INTRON CG32521
3L	6032114	3L_6032114_SNP [dm3] 3L_6039014_SNP [dm6]	C	T	4.204e^-4	0.866	UPSTREAM Jon65Aiv DOWNSTREAM CG6462 INTERGENIC
3R	19804847	3R_19804847_SNP [dm3] 3R_23979125_SNP [dm6]	C	T	4.211e^-4	0.866	SYNONYMOUS_CODING CG31140
X	16090825	X_16090825_SNP [dm3] X_16196792_SNP [dm6]	G	T	4.214e^-4	0.866	INTERGENIC
2R	18282848	2R_18282848_SNP [dm3] 2R_22395343_SNP [dm6]	T	A	4.223e^-4	0.866	INTRON babos
2L	8970139	2L_8970139_SNP [dm3] 2L_8970139_SNP [dm6]	A	T	4.223e^-4	0.866	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
2L	2771013	2L_2771013_SNP [dm3] 2L_2771013_SNP [dm6]	G	A	4.229e^-4	0.866	SYNONYMOUS_CODING CG15399 UPSTREAM colt DOWNSTREAM CG2862	TF binding site mE1_TFBS_eve mE1_TFBS_sens
3L	3661195	3L_3661195_SNP [dm3] 3L_3661195_SNP [dm6]	T	C	4.253e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5124452	2R_5124452_SNP [dm3] 2R_9236947_SNP [dm6]	C	T	4.254e^-4	0.866	UPSTREAM Cyp4p2 INTRON hig
2L	18664536	2L_18664536_SNP [dm3] 2L_18664536_SNP [dm6]	T	G	4.261e^-4	0.866	UPSTREAM CR42490 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3284942	3L_3284942_SNP [dm3] 3L_3284942_SNP [dm6]	C	T	4.268e^-4	0.866	INTRON CG12017
3R	24954216	3R_24954216_SNP [dm3] 3R_29128494_SNP [dm6]	T	C	4.269e^-4	0.866	DOWNSTREAM dgt6 & 1 other INTERGENIC
X	3809889	X_3809889_SNP [dm3] X_3915856_SNP [dm6]	C	T	4.270e^-4	0.866	INTRON CG42541
3R	27494724	3R_27494724_SNP [dm3] 3R_31669002_SNP [dm6]	G	C	4.273e^-4	0.866	UPSTREAM CG1815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13718148	2L_13718148_SNP [dm3] 2L_13718148_SNP [dm6]	C	T	4.286e^-4	0.866	UPSTREAM CG31814 INTERGENIC
2R	19505943	2R_19505943_SNP [dm3] 2R_23618420_SNP [dm6]	A	G	4.287e^-4	0.866	INTERGENIC
3R	25789706	3R_25789706_SNP [dm3] 3R_29963984_SNP [dm6]	A	C	4.287e^-4	0.866	INTRON TkR99D
2R	18077952	2R_18077952_SNP [dm3] 2R_22190447_SNP [dm6]	T	C	4.293e^-4	0.866	SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
3L	9018952	3L_9018952_DEL [dm3] 3L_9025852_DEL [dm6]	TT	T	4.294e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24821439	3R_24821439_SNP [dm3] 3R_28995717_SNP [dm6]	T	C	4.295e^-4	0.866	INTRON wat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10280121	3L_10280121_SNP [dm3] 3L_10287021_SNP [dm6]	T	C	4.296e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9058871	2L_9058871_SNP [dm3] 2L_9058871_SNP [dm6]	A	G	4.297e^-4	0.866	INTRON CG31708
3R	15562198	3R_15562198_SNP [dm3] 3R_19736476_SNP [dm6]	G	A	4.305e^-4	0.866	INTRON GluClalpha
2R	3565123	2R_3565123_SNP [dm3] 2R_7677618_SNP [dm6]	A	T	4.305e^-4	0.866	UTR_3_PRIME CG1399
2R	3565124	2R_3565124_SNP [dm3] 2R_7677619_SNP [dm6]	T	G	4.305e^-4	0.866	UTR_3_PRIME CG1399
3R	5406594	3R_5406594_DEL [dm3] 3R_9580872_DEL [dm6]	CG	C	4.309e^-4	0.866	UTR_3_PRIME CG8273 UPSTREAM CG8301	TF binding site mE1_TFBS_cad
X	9011979	X_9011979_SNP [dm3] X_9117946_SNP [dm6]	A	C	4.313e^-4	0.866	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4264926	3R_4264926_SNP [dm3] 3R_8439204_SNP [dm6]	C	T	4.316e^-4	0.866	INTRON CG45263
3R	15561940	3R_15561940_SNP [dm3] 3R_19736218_SNP [dm6]	C	G	4.320e^-4	0.866	INTRON GluClalpha
2R	6324886	2R_6324886_SNP [dm3] 2R_10437381_SNP [dm6]	A	T	4.323e^-4	0.866	UTR_5_PRIME CG12895 UPSTREAM Galphao DOWNSTREAM RanBPM	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13681978	3R_13681978_SNP [dm3] 3R_17856256_SNP [dm6]	C	T	4.327e^-4	0.866	INTRON tinc
3L	14114254	3L_14114254_SNP [dm3] 3L_14121154_SNP [dm6]	A	T	4.328e^-4	0.866	INTRON Sox21b
2R	8524793	2R_8524793_SNP [dm3] 2R_12637288_SNP [dm6]	C	A	4.335e^-4	0.866	INTRON Iswi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12179372	2L_12179372_SNP [dm3] 2L_12179372_SNP [dm6]	T	G	4.336e^-4	0.866	INTRON aret
3R	11875701	3R_11875701_SNP [dm3] 3R_16049979_SNP [dm6]	T	A	4.337e^-4	0.866	SYNONYMOUS_CODING CG5013 UPSTREAM ird5 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_sens
3L	576347	3L_576347_SNP [dm3] 3L_576347_SNP [dm6]	T	G	4.337e^-4	0.866	UTR_3_PRIME hipk DOWNSTREAM hipk
2R	19505735	2R_19505735_SNP [dm3] 2R_23618212_SNP [dm6]	A	C	4.345e^-4	0.866	INTERGENIC
2R	19505713	2R_19505713_SNP [dm3] 2R_23618190_SNP [dm6]	G	A	4.352e^-4	0.866	INTERGENIC
X	10579571	X_10579571_SNP [dm3] X_10685538_SNP [dm6]	G	C	4.355e^-4	0.866	INTRON X11Lbeta
2L	15461705	2L_15461705_SNP [dm3] 2L_15461705_SNP [dm6]	A	T	4.358e^-4	0.866	INTERGENIC
3L	1554284	3L_1554284_SNP [dm3] 3L_1554284_SNP [dm6]	C	T	4.364e^-4	0.866	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
X	21041948	X_21041948_SNP [dm3] X_21170921_SNP [dm6]	T	G	4.367e^-4	0.866	INTERGENIC
2R	6333188	2R_6333188_SNP [dm3] 2R_10445683_SNP [dm6]	C	T	4.370e^-4	0.866	INTRON Galphao
3R	25837569	3R_25837569_SNP [dm3] 3R_30011847_SNP [dm6]	A	G	4.372e^-4	0.866	SYNONYMOUS_CODING CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13547634	2R_13547634_SNP [dm3] 2R_17660129_SNP [dm6]	T	A	4.382e^-4	0.866	INTRON CCHa1-R
X	5817888	X_5817888_SNP [dm3] X_5923855_SNP [dm6]	A	T	4.391e^-4	0.866	INTRON CG3726
2L	11183471	2L_11183471_SNP [dm3] 2L_11183471_SNP [dm6]	A	C	4.393e^-4	0.866	INTRON Ca-beta
3L	10280028	3L_10280028_SNP [dm3] 3L_10286928_SNP [dm6]	A	T	4.395e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17020888	3R_17020888_SNP [dm3] 3R_21195166_SNP [dm6]	C	A	4.399e^-4	0.866	INTRON SNF4Agamma
2L	5480249	2L_5480249_SNP [dm3] 2L_5480249_SNP [dm6]	T	C	4.402e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	21736115	3R_21736115_SNP [dm3] 3R_25910393_SNP [dm6]	T	C	4.408e^-4	0.866	INTRON CG42235
2R	11023892	2R_11023892_DEL [dm3] 2R_15136387_DEL [dm6]	CC	C	4.408e^-4	0.866	INTRON chn	TF binding site mE1_TFBS_HSA
X	10596686	X_10596686_SNP [dm3] X_10702653_SNP [dm6]	C	T	4.416e^-4	0.866	SYNONYMOUS_CODING X11Lbeta
2R	16415522	2R_16415522_SNP [dm3] 2R_20528017_SNP [dm6]	G	C	4.422e^-4	0.866	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20845815	3R_20845815_SNP [dm3] 3R_25020093_SNP [dm6]	C	G	4.424e^-4	0.866	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3607146	3L_3607146_SNP [dm3] 3L_3607146_SNP [dm6]	C	G	4.424e^-4	0.866	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	21042771	X_21042771_SNP [dm3] X_21171744_SNP [dm6]	G	A	4.425e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	14043431	2L_14043431_DEL [dm3] 2L_14043431_DEL [dm6]	AA	A	4.427e^-4	0.866	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5362593	3R_5362593_SNP [dm3] 3R_9536871_SNP [dm6]	C	T	4.432e^-4	0.866	UTR_3_PRIME mura
X	17727859	X_17727859_SNP [dm3] X_17833826_SNP [dm6]	G	C	4.434e^-4	0.866	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	6367064	3L_6367064_SNP [dm3] 3L_6373964_SNP [dm6]	T	G	4.439e^-4	0.866	INTERGENIC
X	10368261	X_10368261_SNP [dm3] X_10474228_SNP [dm6]	G	A	4.453e^-4	0.866	UTR_5_PRIME nocte UPSTREAM nocte & 1 other INTRON CG2889	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20115256	2L_20115256_INS [dm3] 2L_20115256_INS [dm6]	G	GGAATGAATGATTACTG...	4.458e^-4	0.866	INTERGENIC
3L	10516144	3L_10516144_SNP [dm3] 3L_10523044_SNP [dm6]	C	T	4.460e^-4	0.866	INTRON A2bp1
3L	5486829	3L_5486829_SNP [dm3] 3L_5493729_SNP [dm6]	C	T	4.483e^-4	0.866	EXON CR44520
2L	13319262	2L_13319262_INS [dm3] 2L_13319262_INS [dm6]	T	TCGAATGGCCT...	4.485e^-4	0.866	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	13143303	2L_13143303_SNP [dm3] 2L_13143303_SNP [dm6]	C	A	4.491e^-4	0.866	UTR_3_PRIME CG16978 UPSTREAM CG9928
2R	6042906	2R_6042906_SNP [dm3] 2R_10155401_SNP [dm6]	A	G	4.495e^-4	0.866	UPSTREAM KCNQ DOWNSTREAM mlt INTRON KCNQ
2R	11642016	2R_11642016_SNP [dm3] 2R_15754511_SNP [dm6]	A	G	4.496e^-4	0.866	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20283693	2L_20283693_SNP [dm3] 2L_20283693_SNP [dm6]	G	A	4.501e^-4	0.866	INTERGENIC
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	4.505e^-4	0.866	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20536574	2L_20536574_INS [dm3] 2L_20536574_INS [dm6]	C	CTGTGTTGCC	4.514e^-4	0.866	INTERGENIC
2L	9825670	2L_9825670_SNP [dm3] 2L_9825670_SNP [dm6]	A	G	4.514e^-4	0.866	SYNONYMOUS_CODING nAChRalpha6
X	12329442	X_12329442_SNP [dm3] X_12435409_SNP [dm6]	T	G	4.517e^-4	0.866	INTRON Pkcdelta
2L	11176248	2L_11176248_SNP [dm3] 2L_11176248_SNP [dm6]	T	A	4.519e^-4	0.866	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
X	16150714	X_16150714_SNP [dm3] X_16256681_SNP [dm6]	A	G	4.524e^-4	0.866	INTERGENIC
3L	13091442	3L_13091442_SNP [dm3] 3L_13098342_SNP [dm6]	C	T	4.525e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	54049	2L_54049_SNP [dm3] 2L_54049_SNP [dm6]	G	T	4.540e^-4	0.866	INTRON Cda5
3L	1108809	3L_1108809_SNP [dm3] 3L_1108809_SNP [dm6]	T	A	4.546e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6990535	3R_6990535_SNP [dm3] 3R_11164813_SNP [dm6]	A	C	4.546e^-4	0.866	NON_SYNONYMOUS_CODING Ugt86Dg
3R	7746203	3R_7746203_SNP [dm3] 3R_11920481_SNP [dm6]	A	G	4.558e^-4	0.866	INTRON Cad87A
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	4.573e^-4	0.866	INTRON dnr1
3L	19353558	3L_19353558_SNP [dm3] 3L_19360458_SNP [dm6]	G	C	4.575e^-4	0.866	INTRON CG32206
2R	12375604	2R_12375604_SNP [dm3] 2R_16488099_SNP [dm6]	A	T	4.576e^-4	0.866	SYNONYMOUS_CODING CG33459 DOWNSTREAM CG33458
X	1883099	X_1883099_SNP [dm3] X_1989066_SNP [dm6]	C	T	4.580e^-4	0.866	INTRON Hr4
3L	9539875	3L_9539875_SNP [dm3] 3L_9546775_SNP [dm6]	A	T	4.587e^-4	0.866	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	18017651	2L_18017651_SNP [dm3] 2L_18017651_SNP [dm6]	T	C	4.587e^-4	0.866	INTRON rdo
2L	14662931	2L_14662931_SNP [dm3] 2L_14662931_SNP [dm6]	T	C	4.593e^-4	0.866	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19885127	3R_19885127_SNP [dm3] 3R_24059405_SNP [dm6]	A	G	4.597e^-4	0.866	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3R	23123258	3R_23123258_SNP [dm3] 3R_27297536_SNP [dm6]	C	A	4.605e^-4	0.866	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3R	20560247	3R_20560247_INS [dm3] 3R_24734525_INS [dm6]	A	AA	4.612e^-4	0.866	INTRON tok
2L	18250148	2L_18250148_SNP [dm3] 2L_18250148_SNP [dm6]	G	T	4.619e^-4	0.866	INTRON CG42750
X	21045457	X_21045457_SNP [dm3] X_21174430_SNP [dm6]	T	C	4.627e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	3182151	3L_3182151_SNP [dm3] 3L_3182151_SNP [dm6]	C	A	4.636e^-4	0.866	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19724231	2L_19724231_SNP [dm3] 2L_19724231_SNP [dm6]	C	G	4.642e^-4	0.866	INTRON Lar
3R	20010084	3R_20010084_INS [dm3] 3R_24184362_INS [dm6]	G	AA	4.642e^-4	0.866	DOWNSTREAM CG13606 INTERGENIC
X	5251766	X_5251766_SNP [dm3] X_5357733_SNP [dm6]	C	T	4.642e^-4	0.866	UPSTREAM SK INTRON SK
2R	17655032	2R_17655032_SNP [dm3] 2R_21767527_SNP [dm6]	G	T	4.642e^-4	0.866	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
3R	4460621	3R_4460621_SNP [dm3] 3R_8634899_SNP [dm6]	C	A	4.643e^-4	0.866	NON_SYNONYMOUS_CODING Or85e
2L	13716643	2L_13716643_SNP [dm3] 2L_13716643_SNP [dm6]	T	G	4.646e^-4	0.866	INTRON CG31814
2R	17719072	2R_17719072_SNP [dm3] 2R_21831567_SNP [dm6]	A	T	4.659e^-4	0.866	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2L	12699692	2L_12699692_SNP [dm3] 2L_12699692_SNP [dm6]	G	T	4.659e^-4	0.866	SYNONYMOUS_CODING CG17036 DOWNSTREAM PICK1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13367349	3L_13367349_SNP [dm3] 3L_13374249_SNP [dm6]	G	A	4.660e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10861836	2L_10861836_SNP [dm3] 2L_10861836_SNP [dm6]	T	C	4.665e^-4	0.866	UTR_3_PRIME Stam DOWNSTREAM CR43807
3L	8251343	3L_8251343_SNP [dm3] 3L_8258243_SNP [dm6]	G	A	4.667e^-4	0.866	INTRON Dscam4
X	9680278	X_9680278_SNP [dm3] X_9786245_SNP [dm6]	T	C	4.667e^-4	0.866	INTRON CG32698	TF binding site mE1_TFBS_HSA
3R	23008703	3R_23008703_SNP [dm3] 3R_27182981_SNP [dm6]	G	A	4.672e^-4	0.866	INTRON Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Fecal_PH_PAeruginosa phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results