DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.060e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07606

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1381 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	11625068	2R_11625068_SNP [dm3] 2R_15737563_SNP [dm6]	C	A	5.115e^-6	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4435945	2R_4435945_SNP [dm3] 2R_8548440_SNP [dm6]	C	G	6.672e^-6	1	INTERGENIC
3L	1190565	3L_1190565_SNP [dm3] 3L_1190565_SNP [dm6]	G	T	7.682e^-6	1	UTR_3_PRIME Trh DOWNSTREAM CG13912
3L	1906229	3L_1906229_SNP [dm3] 3L_1906229_SNP [dm6]	T	G	7.976e^-6	1	INTRON CG1887
2R	10883757	2R_10883757_SNP [dm3] 2R_14996252_SNP [dm6]	T	C	8.780e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11499936	2L_11499936_SNP [dm3] 2L_11499936_SNP [dm6]	T	C	9.865e^-6	1	UPSTREAM CG6488 INTERGENIC
X	12599988	X_12599988_SNP [dm3] X_12705955_SNP [dm6]	T	C	1.033e^-5	1	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7518609	2R_7518609_SNP [dm3] 2R_11631104_SNP [dm6]	G	A	1.142e^-5	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4299050	2R_4299050_SNP [dm3] 2R_8411545_SNP [dm6]	C	T	1.376e^-5	1	UPSTREAM CG2121 INTRON CG2121
3R	3718365	3R_3718365_SNP [dm3] 3R_7892643_SNP [dm6]	C	A	1.447e^-5	1	INTRON mRpS9 & 1 other	TF binding site mE1_TFBS_cad
2L	1191383	2L_1191383_SNP [dm3] 2L_1191383_SNP [dm6]	A	T	1.687e^-5	1	INTRON CG5001
2R	8665720	2R_8665720_SNP [dm3] 2R_12778215_SNP [dm6]	C	T	1.698e^-5	1	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3515866	X_3515866_SNP [dm3] X_3621833_SNP [dm6]	C	G	1.849e^-5	1	INTRON AstA-R1
2R	4017312	2R_4017312_SNP [dm3] 2R_8129807_SNP [dm6]	A	G	1.885e^-5	1	SYNONYMOUS_CODING Pbp49 UTR_3_PRIME CG42516 DOWNSTREAM Socs44A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13319402	2L_13319402_SNP [dm3] 2L_13319402_SNP [dm6]	T	A	1.951e^-5	1	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1261603	2L_1261603_INS [dm3] 2L_1261603_INS [dm6]	T	TTCAT	1.971e^-5	1	INTRON robo3
X	8647270	X_8647270_SNP [dm3] X_8753237_SNP [dm6]	C	T	2.094e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4335697	2R_4335697_SNP [dm3] 2R_8448192_SNP [dm6]	T	C	2.176e^-5	1	SYNONYMOUS_CODING Cyp4e1
X	16892077	X_16892077_SNP [dm3] X_16998044_SNP [dm6]	T	C	2.195e^-5	1	INTRON CG45002
2R	12039256	2R_12039256_DEL [dm3] 2R_16151751_DEL [dm6]	GTG	G	2.251e^-5	1	INTRON lbk
2L	13319388	2L_13319388_INS [dm3] 2L_13319388_INS [dm6]	T	TGAAT	2.304e^-5	1	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19060178	2R_19060178_SNP [dm3] 2R_23172655_SNP [dm6]	T	C	2.341e^-5	1	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19881125	2R_19881125_DEL [dm3] 2R_23993602_DEL [dm6]	TT	T	2.423e^-5	1	UPSTREAM mir-1009 INTRON CG3860
3L	18266224	3L_18266224_SNP [dm3] 3L_18273124_SNP [dm6]	T	C	2.437e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	19060226	2R_19060226_SNP [dm3] 2R_23172703_SNP [dm6]	A	G	2.444e^-5	1	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7583975	2L_7583975_SNP [dm3] 2L_7583975_SNP [dm6]	T	A	2.517e^-5	1	DOWNSTREAM Spn28B INTERGENIC
2L	13319399	2L_13319399_SNP [dm3] 2L_13319399_SNP [dm6]	T	C	2.528e^-5	1	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	4626449	2R_4626449_SNP [dm3] 2R_8738944_SNP [dm6]	C	G	2.638e^-5	1	INTRON CG8740
3L	2854049	3L_2854049_SNP [dm3] 3L_2854049_SNP [dm6]	T	C	2.696e^-5	1	INTRON CG43444
3L	12228960	3L_12228960_SNP [dm3] 3L_12235860_SNP [dm6]	T	A	2.809e^-5	1	INTRON app
2L	7090261	2L_7090261_SNP [dm3] 2L_7090261_SNP [dm6]	G	A	3.009e^-5	1	INTERGENIC
3L	2854029	3L_2854029_SNP [dm3] 3L_2854029_SNP [dm6]	G	C	3.010e^-5	1	INTRON CG43444
3L	2854020	3L_2854020_SNP [dm3] 3L_2854020_SNP [dm6]	C	G	3.057e^-5	1	INTRON CG43444
2L	11499855	2L_11499855_SNP [dm3] 2L_11499855_SNP [dm6]	G	C	3.087e^-5	1	UPSTREAM CG6488 INTERGENIC
3L	2921203	3L_2921203_SNP [dm3] 3L_2921203_SNP [dm6]	G	T	3.102e^-5	1	INTRON Shab
3R	3635786	3R_3635786_SNP [dm3] 3R_7810064_SNP [dm6]	T	A	3.334e^-5	1	UPSTREAM CG31472 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8578182	2L_8578182_SNP [dm3] 2L_8578182_SNP [dm6]	G	A	3.355e^-5	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18266238	3L_18266238_DEL [dm3] 3L_18273138_DEL [dm6]	AA	A	3.480e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	4711791	2L_4711791_SNP [dm3] 2L_4711791_SNP [dm6]	A	G	3.570e^-5	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2L	4711793	2L_4711793_SNP [dm3] 2L_4711793_SNP [dm6]	A	G	3.570e^-5	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	13118523	2R_13118523_SNP [dm3] 2R_17231018_SNP [dm6]	G	A	3.601e^-5	1	INTRON mbl
2R	19881218	2R_19881218_SNP [dm3] 2R_23993695_SNP [dm6]	G	A	3.609e^-5	1	SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
2L	11499744	2L_11499744_SNP [dm3] 2L_11499744_SNP [dm6]	T	C	3.731e^-5	1	UPSTREAM CG6488 INTERGENIC
2R	5238727	2R_5238727_INS [dm3] 2R_9351222_INS [dm6]	T	TA	3.824e^-5	1	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9740097	X_9740097_SNP [dm3] X_9846064_SNP [dm6]	C	T	3.843e^-5	1	SYNONYMOUS_CODING CG32698
2L	7583967	2L_7583967_SNP [dm3] 2L_7583967_SNP [dm6]	A	G	3.894e^-5	1	DOWNSTREAM Spn28B INTERGENIC
X	4535918	X_4535918_SNP [dm3] X_4641885_SNP [dm6]	C	T	3.995e^-5	1	NON_SYNONYMOUS_CODING CG3062 UTR_5_PRIME CG3081 UPSTREAM CG3081	TF binding site mE1_TFBS_chinmo
3L	20347240	3L_20347240_SNP [dm3] 3L_20354140_SNP [dm6]	G	A	4.295e^-5	1	UTR_5_PRIME CG5618 DOWNSTREAM eRF1
2R	18865056	2R_18865056_SNP [dm3] 2R_22977533_SNP [dm6]	C	G	4.397e^-5	1	INTERGENIC
2L	19886315	2L_19886315_SNP [dm3] 2L_19886315_SNP [dm6]	A	T	4.504e^-5	1	INTRON sick
X	22056225	X_22056225_SNP [dm3] X_22654389_SNP [dm6]	A	T	4.543e^-5	1	INTERGENIC
2R	16647594	2R_16647594_SNP [dm3] 2R_20760089_SNP [dm6]	G	T	4.654e^-5	1	INTERGENIC
2L	10376696	2L_10376696_INS [dm3] 2L_10376696_INS [dm6]	G	GG	4.685e^-5	1	UTR_5_PRIME dpr19 UPSTREAM CG33303 INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	8578206	2L_8578206_SNP [dm3] 2L_8578206_SNP [dm6]	G	A	4.917e^-5	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	3682061	3R_3682061_SNP [dm3] 3R_7856339_SNP [dm6]	T	G	5.340e^-5	1	UTR_3_PRIME CG17816 DOWNSTREAM CG34384
2R	20011212	2R_20011212_SNP [dm3] 2R_24123689_SNP [dm6]	A	C	5.363e^-5	1	SPLICE_SITE_REGION CG43775 & 2 others DOWNSTREAM CG3257 INTRON CG43775 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1903555	3L_1903555_SNP [dm3] 3L_1903555_SNP [dm6]	G	T	5.427e^-5	1	INTRON CG1887
2L	1261584	2L_1261584_INS [dm3] 2L_1261584_INS [dm6]	C	CTCATC	5.456e^-5	1	INTRON robo3
2L	15251787	2L_15251787_SNP [dm3] 2L_15251787_SNP [dm6]	G	A	5.476e^-5	1	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11502636	2L_11502636_SNP [dm3] 2L_11502636_SNP [dm6]	C	A	5.490e^-5	1	INTRON spz4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2151186	3L_2151186_SNP [dm3] 3L_2151186_SNP [dm6]	G	T	5.630e^-5	1	INTRON zormin	TF binding site mE1_TFBS_Trl
3R	16050138	3R_16050138_SNP [dm3] 3R_20224416_SNP [dm6]	G	A	5.652e^-5	1	INTRON Nlg4
3R	21970106	3R_21970106_SNP [dm3] 3R_26144384_SNP [dm6]	C	T	5.714e^-5	1	INTERGENIC
2L	8506999	2L_8506999_SNP [dm3] 2L_8506999_SNP [dm6]	A	G	5.937e^-5	1	UPSTREAM Dh31 INTERGENIC
3L	11358604	3L_11358604_SNP [dm3] 3L_11365504_SNP [dm6]	A	G	6.016e^-5	1	UPSTREAM CG6163 EXON CR45036	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18266324	3L_18266324_SNP [dm3] 3L_18273224_SNP [dm6]	A	T	6.261e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12645013	3R_12645013_SNP [dm3] 3R_16819291_SNP [dm6]	C	T	6.418e^-5	1	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
2R	9658161	2R_9658161_SNP [dm3] 2R_13770656_SNP [dm6]	G	T	6.586e^-5	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13838014	3R_13838014_SNP [dm3] 3R_18012292_SNP [dm6]	T	C	6.586e^-5	1	INTRON cpo
2R	10734508	2R_10734508_SNP [dm3] 2R_14847003_SNP [dm6]	G	C	6.614e^-5	1	SYNONYMOUS_CODING CG10209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19758194	3R_19758194_SNP [dm3] 3R_23932472_SNP [dm6]	G	A	6.673e^-5	1	SYNONYMOUS_CODING CG13599 UPSTREAM Rpt2 DOWNSTREAM RpS19b
3L	18266225	3L_18266225_SNP [dm3] 3L_18273125_SNP [dm6]	T	C	6.676e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	1907513	3L_1907513_SNP [dm3] 3L_1907513_SNP [dm6]	C	A	6.770e^-5	1	INTRON CG1887
2L	1191388	2L_1191388_DEL [dm3] 2L_1191388_DEL [dm6]	CTC	C	7.027e^-5	1	INTRON CG5001
3L	1907491	3L_1907491_SNP [dm3] 3L_1907491_SNP [dm6]	A	G	7.047e^-5	1	INTRON CG1887
3L	1908256	3L_1908256_SNP [dm3] 3L_1908256_SNP [dm6]	A	T	7.047e^-5	1	INTRON CG1887
2L	9643399	2L_9643399_SNP [dm3] 2L_9643399_SNP [dm6]	C	T	7.122e^-5	1	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
2L	14017522	2L_14017522_SNP [dm3] 2L_14017522_SNP [dm6]	G	A	7.225e^-5	1	INTRON bgm
2R	17019353	2R_17019353_SNP [dm3] 2R_21131848_SNP [dm6]	T	C	7.548e^-5	1	NON_SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11502567	2L_11502567_SNP [dm3] 2L_11502567_SNP [dm6]	C	T	7.607e^-5	1	INTRON spz4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3645837	3R_3645837_SNP [dm3] 3R_7820115_SNP [dm6]	C	T	7.694e^-5	1	INTRON CG34384
3L	19159293	3L_19159293_SNP [dm3] 3L_19166193_SNP [dm6]	T	A	7.755e^-5	1	INTRON fz2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	2494361	2L_2494361_SNP [dm3] 2L_2494361_SNP [dm6]	G	T	7.783e^-5	1	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14015782	2L_14015782_SNP [dm3] 2L_14015782_SNP [dm6]	A	T	7.785e^-5	1	SPLICE_SITE_REGION bgm INTRON bgm	TF binding site mE1_TFBS_cad
3R	14886268	3R_14886268_DEL [dm3] 3R_19060546_DEL [dm6]	TCAAGT	T	7.802e^-5	1	INTRON cdi
X	19484422	X_19484422_SNP [dm3] X_19590389_SNP [dm6]	T	G	7.914e^-5	1	UPSTREAM CG14219 INTERGENIC
3R	23303513	3R_23303513_SNP [dm3] 3R_27477791_SNP [dm6]	G	A	7.927e^-5	1	UPSTREAM Cyp6a18 INTERGENIC
2R	11625044	2R_11625044_SNP [dm3] 2R_15737539_SNP [dm6]	T	A	7.980e^-5	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16805177	2R_16805177_SNP [dm3] 2R_20917672_SNP [dm6]	G	A	8.030e^-5	1	INTRON Rx
2L	2358491	2L_2358491_SNP [dm3] 2L_2358491_SNP [dm6]	A	G	8.092e^-5	1	UTR_3_PRIME eys DOWNSTREAM Rab5 & 1 other
X	3249525	X_3249525_SNP [dm3] X_3355492_SNP [dm6]	C	T	8.260e^-5	1	INTERGENIC
2L	8969162	2L_8969162_SNP [dm3] 2L_8969162_SNP [dm6]	A	C	8.362e^-5	1	SYNONYMOUS_CODING CG18088
3L	18266229	3L_18266229_SNP [dm3] 3L_18273129_SNP [dm6]	G	A	8.478e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	19457034	3L_19457034_SNP [dm3] 3L_19463934_SNP [dm6]	A	G	8.724e^-5	1	DOWNSTREAM CG14095 INTERGENIC
3L	18266360	3L_18266360_SNP [dm3] 3L_18273260_SNP [dm6]	A	T	8.765e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2252376	3R_2252376_SNP [dm3] 3R_6426654_SNP [dm6]	A	C	8.943e^-5	1	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
X	6503416	X_6503416_SNP [dm3] X_6609383_SNP [dm6]	C	T	9.001e^-5	1	INTRON pigs
3L	18266323	3L_18266323_SNP [dm3] 3L_18273223_SNP [dm6]	G	T	9.256e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3473617	3R_3473617_SNP [dm3] 3R_7647895_SNP [dm6]	A	T	9.364e^-5	1	INTERGENIC
3L	10940015	3L_10940015_SNP [dm3] 3L_10946915_SNP [dm6]	G	C	9.407e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14720483	X_14720483_SNP [dm3] X_14826450_SNP [dm6]	G	T	9.424e^-5	1	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17991412	2L_17991412_DEL [dm3] 2L_17991412_DEL [dm6]	GG	G	9.517e^-5	1	UTR_3_PRIME Prosbeta5R2
2L	7016666	2L_7016666_SNP [dm3] 2L_7016666_SNP [dm6]	C	A	9.756e^-5	1	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3L	13818237	3L_13818237_SNP [dm3] 3L_13825137_SNP [dm6]	G	A	9.846e^-5	1	INTERGENIC
2R	12552965	2R_12552965_SNP [dm3] 2R_16665460_SNP [dm6]	T	C	9.926e^-5	1	INTRON Picot
2L	1401158	2L_1401158_SNP [dm3] 2L_1401158_SNP [dm6]	C	A	1.006e^-4	1	INTRON lea
3L	11928576	3L_11928576_SNP [dm3] 3L_11935476_SNP [dm6]	C	T	1.006e^-4	1	SYNONYMOUS_CODING byn UTR_3_PRIME byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24228242	3R_24228242_SNP [dm3] 3R_28402520_SNP [dm6]	C	T	1.017e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2244393	2L_2244393_SNP [dm3] 2L_2244393_SNP [dm6]	G	T	1.023e^-4	1	UTR_3_PRIME CG4267 UPSTREAM CR42859
3L	2365749	3L_2365749_SNP [dm3] 3L_2365749_SNP [dm6]	T	G	1.027e^-4	1	INTERGENIC
2R	15696298	2R_15696298_SNP [dm3] 2R_19808793_SNP [dm6]	A	G	1.031e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10734459	2R_10734459_SNP [dm3] 2R_14846954_SNP [dm6]	C	T	1.032e^-4	1	NON_SYNONYMOUS_CODING CG10209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3490687	X_3490687_DEL [dm3] X_3596654_DEL [dm6]	AA	A	1.057e^-4	1	INTRON AstA-R1
3R	20259997	3R_20259997_SNP [dm3] 3R_24434275_SNP [dm6]	C	G	1.075e^-4	1	INTRON nAChRalpha1
X	10056405	X_10056405_SNP [dm3] X_10162372_SNP [dm6]	G	T	1.079e^-4	1	INTRON CR44894 & 1 other
3L	1058554	3L_1058554_SNP [dm3] 3L_1058554_SNP [dm6]	T	C	1.089e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11501495	2L_11501495_INS [dm3] 2L_11501495_INS [dm6]	A	AA	1.110e^-4	1	UPSTREAM spz4 INTERGENIC
2L	11501499	2L_11501499_INS [dm3] 2L_11501499_INS [dm6]	G	GAATATATTCGGATA...	1.110e^-4	1	UPSTREAM spz4 INTERGENIC
2R	10691183	2R_10691183_SNP [dm3] 2R_14803678_SNP [dm6]	C	A	1.127e^-4	1	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5821921	3L_5821921_SNP [dm3] 3L_5828821_SNP [dm6]	A	T	1.131e^-4	1	INTRON vn
2L	1485154	2L_1485154_SNP [dm3] 2L_1485154_SNP [dm6]	G	C	1.135e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18266227	3L_18266227_SNP [dm3] 3L_18273127_SNP [dm6]	T	G	1.141e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	20137675	X_20137675_SNP [dm3] X_20266649_SNP [dm6]	A	G	1.153e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24402179	3R_24402179_SNP [dm3] 3R_28576457_SNP [dm6]	A	T	1.160e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13818252	3L_13818252_SNP [dm3] 3L_13825152_SNP [dm6]	A	C	1.164e^-4	1	INTERGENIC
2R	19889510	2R_19889510_SNP [dm3] 2R_24001987_SNP [dm6]	T	A	1.171e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3723455	3R_3723455_SNP [dm3] 3R_7897733_SNP [dm6]	C	T	1.174e^-4	1	INTRON mRpS9 & 1 other
3L	19159290	3L_19159290_SNP [dm3] 3L_19166190_SNP [dm6]	G	C	1.179e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	8295548	2R_8295548_SNP [dm3] 2R_12408043_SNP [dm6]	A	G	1.182e^-4	1	UPSTREAM CG30050 DOWNSTREAM Cpr49Af INTRON Cpr49Ag
2L	2494432	2L_2494432_SNP [dm3] 2L_2494432_SNP [dm6]	C	T	1.183e^-4	1	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13270898	2R_13270898_SNP [dm3] 2R_17383393_SNP [dm6]	A	G	1.193e^-4	1	INTERGENIC
2L	11500463	2L_11500463_SNP [dm3] 2L_11500463_SNP [dm6]	A	T	1.217e^-4	1	INTERGENIC
X	8661222	X_8661222_SNP [dm3] X_8767189_SNP [dm6]	T	C	1.220e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3227065	2L_3227065_SNP [dm3] 2L_3227065_SNP [dm6]	C	T	1.242e^-4	1	INTERGENIC
X	6770543	X_6770543_SNP [dm3] X_6876510_SNP [dm6]	T	A	1.246e^-4	1	NON_SYNONYMOUS_CODING CG43736 DOWNSTREAM CG43736 INTRON CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11500172	2L_11500172_SNP [dm3] 2L_11500172_SNP [dm6]	T	G	1.248e^-4	1	INTERGENIC
2R	14295952	2R_14295952_SNP [dm3] 2R_18408447_SNP [dm6]	C	T	1.251e^-4	1	SYNONYMOUS_CODING GstE8 UPSTREAM GstE9 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
X	8647287	X_8647287_SNP [dm3] X_8753254_SNP [dm6]	A	G	1.252e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8578203	2L_8578203_SNP [dm3] 2L_8578203_SNP [dm6]	T	A	1.265e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11501265	2L_11501265_SNP [dm3] 2L_11501265_SNP [dm6]	T	A	1.279e^-4	1	UPSTREAM spz4 INTERGENIC
2R	8295542	2R_8295542_SNP [dm3] 2R_12408037_SNP [dm6]	C	T	1.282e^-4	1	UPSTREAM CG30050 DOWNSTREAM Cpr49Af INTRON Cpr49Ag
3L	2425217	3L_2425217_SNP [dm3] 3L_2425217_SNP [dm6]	G	A	1.288e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_bab1
X	4315136	X_4315136_SNP [dm3] X_4421103_SNP [dm6]	T	C	1.290e^-4	1	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	8555982	X_8555982_SNP [dm3] X_8661949_SNP [dm6]	T	A	1.295e^-4	1	INTERGENIC
3R	13196162	3R_13196162_SNP [dm3] 3R_17370440_SNP [dm6]	A	G	1.307e^-4	1	DOWNSTREAM CR44256 INTERGENIC
2L	1621416	2L_1621416_INS [dm3] 2L_1621416_INS [dm6]	T	TATTGT	1.320e^-4	1	EXON CR44603
2L	4840658	2L_4840658_SNP [dm3] 2L_4840658_SNP [dm6]	G	A	1.361e^-4	1	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14015707	2L_14015707_SNP [dm3] 2L_14015707_SNP [dm6]	G	A	1.363e^-4	1	INTRON bgm	TF binding site mE1_TFBS_cad
2R	18136736	2R_18136736_SNP [dm3] 2R_22249231_SNP [dm6]	G	T	1.369e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA mE1_TFBS_sens
3R	13196425	3R_13196425_SNP [dm3] 3R_17370703_SNP [dm6]	T	C	1.369e^-4	1	DOWNSTREAM CR44256 INTERGENIC
3R	990042	3R_990042_SNP [dm3] 3R_5164320_SNP [dm6]	G	A	1.376e^-4	1	UPSTREAM dpr16 INTRON dpr16
2L	2398141	2L_2398141_SNP [dm3] 2L_2398141_SNP [dm6]	G	A	1.376e^-4	1	INTRON VGlut
3R	990048	3R_990048_SNP [dm3] 3R_5164326_SNP [dm6]	G	A	1.381e^-4	1	UPSTREAM dpr16 INTRON dpr16
2L	1277154	2L_1277154_SNP [dm3] 2L_1277154_SNP [dm6]	G	A	1.384e^-4	1	INTRON robo3
X	15197492	X_15197492_SNP [dm3] X_15303459_SNP [dm6]	A	C	1.399e^-4	1	INTRON gce
3L	18266237	3L_18266237_SNP [dm3] 3L_18273137_SNP [dm6]	C	G	1.403e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	3227026	2L_3227026_SNP [dm3] 2L_3227026_SNP [dm6]	T	G	1.408e^-4	1	INTERGENIC
2L	17798598	2L_17798598_SNP [dm3] 2L_17798598_SNP [dm6]	C	T	1.409e^-4	1	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	6477941	2L_6477941_SNP [dm3] 2L_6477941_SNP [dm6]	G	A	1.415e^-4	1	UPSTREAM CG9536 INTRON Sec61alpha	TF binding site mE1_TFBS_sens
2R	11245381	2R_11245381_SNP [dm3] 2R_15357876_SNP [dm6]	G	T	1.420e^-4	1	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	16810666	3R_16810666_SNP [dm3] 3R_20984944_SNP [dm6]	G	A	1.421e^-4	1	INTRON Calx
3R	25193986	3R_25193986_INS [dm3] 3R_29368264_INS [dm6]	C	CC	1.442e^-4	1	INTERGENIC
X	13748890	X_13748890_DEL [dm3] X_13854857_DEL [dm6]	TTGCGCCGCTTCCGGT...	T	1.445e^-4	1	CODON_DELETION mamo	TF binding site mE1_TFBS_chinmo
3R	3660785	3R_3660785_SNP [dm3] 3R_7835063_SNP [dm6]	C	A	1.450e^-4	1	INTRON CG34384
2R	9639641	2R_9639641_SNP [dm3] 2R_13752136_SNP [dm6]	C	T	1.470e^-4	1	INTERGENIC
2R	5591353	2R_5591353_SNP [dm3] 2R_9703848_SNP [dm6]	T	C	1.475e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19779150	3R_19779150_SNP [dm3] 3R_23953428_SNP [dm6]	A	C	1.502e^-4	1	INTRON Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4235931	X_4235931_SNP [dm3] X_4341898_SNP [dm6]	T	C	1.534e^-4	1	INTRON norpA
2R	6644437	2R_6644437_SNP [dm3] 2R_10756932_SNP [dm6]	G	A	1.537e^-4	1	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12039220	2R_12039220_SNP [dm3] 2R_16151715_SNP [dm6]	C	T	1.540e^-4	1	INTRON lbk
3R	1779252	3R_1779252_SNP [dm3] 3R_5953530_SNP [dm6]	T	G	1.559e^-4	1	INTRON CG34113
2R	16805261	2R_16805261_SNP [dm3] 2R_20917756_SNP [dm6]	T	A	1.563e^-4	1	INTRON Rx
X	16768526	X_16768526_SNP [dm3] X_16874493_SNP [dm6]	A	C	1.581e^-4	1	INTRON CG13003
X	13668881	X_13668881_SNP [dm3] X_13774848_SNP [dm6]	A	C	1.585e^-4	1	UTR_3_PRIME rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_dl
X	13668882	X_13668882_SNP [dm3] X_13774849_SNP [dm6]	T	A	1.585e^-4	1	UTR_3_PRIME rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_dl
X	9740093	X_9740093_SNP [dm3] X_9846060_SNP [dm6]	C	T	1.588e^-4	1	SYNONYMOUS_CODING CG32698
2L	14020447	2L_14020447_SNP [dm3] 2L_14020447_SNP [dm6]	G	C	1.592e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6458047	2L_6458047_SNP [dm3] 2L_6458047_SNP [dm6]	T	A	1.593e^-4	1	DOWNSTREAM CG16947 INTRON frj	TF binding site mE1_TFBS_sens
2R	12550981	2R_12550981_DEL [dm3] 2R_16663476_DEL [dm6]	TGCTCTGTTTCATAT...	T	1.594e^-4	1	INTRON Picot
2R	9646569	2R_9646569_SNP [dm3] 2R_13759064_SNP [dm6]	C	T	1.595e^-4	1	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3638897	3R_3638897_SNP [dm3] 3R_7813175_SNP [dm6]	T	C	1.597e^-4	1	DOWNSTREAM CG31473 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	11501133	2L_11501133_SNP [dm3] 2L_11501133_SNP [dm6]	T	A	1.605e^-4	1	UPSTREAM spz4 INTERGENIC
2L	8578171	2L_8578171_SNP [dm3] 2L_8578171_SNP [dm6]	G	T	1.611e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14018254	2L_14018254_SNP [dm3] 2L_14018254_SNP [dm6]	C	T	1.625e^-4	1	SYNONYMOUS_CODING bgm	TF binding site mE1_TFBS_cad
3R	16492916	3R_16492916_SNP [dm3] 3R_20667194_SNP [dm6]	C	T	1.628e^-4	1	INTERGENIC
2L	11499876	2L_11499876_SNP [dm3] 2L_11499876_SNP [dm6]	T	C	1.640e^-4	1	UPSTREAM CG6488 INTERGENIC
2L	9639066	2L_9639066_SNP [dm3] 2L_9639066_SNP [dm6]	A	G	1.643e^-4	1	INTRON Apoltp
X	3488220	X_3488220_SNP [dm3] X_3594187_SNP [dm6]	C	T	1.652e^-4	1	INTRON AstA-R1
X	10751502	X_10751502_SNP [dm3] X_10857469_SNP [dm6]	G	T	1.652e^-4	1	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	15157614	X_15157614_SNP [dm3] X_15263581_SNP [dm6]	A	T	1.656e^-4	1	INTERGENIC
3R	12642661	3R_12642661_SNP [dm3] 3R_16816939_SNP [dm6]	A	T	1.663e^-4	1	INTRON abd-A
2R	19881333	2R_19881333_SNP [dm3] 2R_23993810_SNP [dm6]	T	C	1.667e^-4	1	NON_SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
2R	16805225	2R_16805225_SNP [dm3] 2R_20917720_SNP [dm6]	T	C	1.669e^-4	1	INTRON Rx
3R	16624429	3R_16624429_SNP [dm3] 3R_20798707_SNP [dm6]	C	T	1.670e^-4	1	INTRON Syp
2R	9646561	2R_9646561_SNP [dm3] 2R_13759056_SNP [dm6]	G	T	1.672e^-4	1	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11899978	2R_11899978_SNP [dm3] 2R_16012473_SNP [dm6]	T	C	1.676e^-4	1	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3R	3813109	3R_3813109_SNP [dm3] 3R_7987387_SNP [dm6]	T	A	1.682e^-4	1	INTRON CG2781
3R	3813129	3R_3813129_SNP [dm3] 3R_7987407_SNP [dm6]	A	T	1.682e^-4	1	INTRON CG2781
2L	8969126	2L_8969126_SNP [dm3] 2L_8969126_SNP [dm6]	C	T	1.686e^-4	1	SYNONYMOUS_CODING CG18088
2L	9241350	2L_9241350_SNP [dm3] 2L_9241350_SNP [dm6]	C	A	1.690e^-4	1	INTRON tai	TF binding site mE1_TFBS_chinmo
2R	10997733	2R_10997733_SNP [dm3] 2R_15110228_SNP [dm6]	T	C	1.696e^-4	1	INTERGENIC
X	12621807	X_12621807_SNP [dm3] X_12727774_SNP [dm6]	G	A	1.703e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3441383	3R_3441383_SNP [dm3] 3R_7615661_SNP [dm6]	T	A	1.711e^-4	1	INTRON CG34127
3R	4002277	3R_4002277_SNP [dm3] 3R_8176555_SNP [dm6]	T	C	1.711e^-4	1	INTRON grn	TF binding site BDTNP1_TFBS_dl
2L	12148867	2L_12148867_SNP [dm3] 2L_12148867_SNP [dm6]	C	G	1.737e^-4	1	INTRON CG31760
2L	14015738	2L_14015738_SNP [dm3] 2L_14015738_SNP [dm6]	G	A	1.745e^-4	1	INTRON bgm	TF binding site mE1_TFBS_cad
2R	9658158	2R_9658158_SNP [dm3] 2R_13770653_SNP [dm6]	G	A	1.749e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13270958	2R_13270958_SNP [dm3] 2R_17383453_SNP [dm6]	A	G	1.751e^-4	1	INTERGENIC
2R	14603730	2R_14603730_SNP [dm3] 2R_18716225_SNP [dm6]	C	T	1.757e^-4	1	INTERGENIC
2R	10945371	2R_10945371_SNP [dm3] 2R_15057866_SNP [dm6]	G	A	1.763e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13758577	2L_13758577_SNP [dm3] 2L_13758577_SNP [dm6]	G	A	1.802e^-4	1	INTRON TM9SF4
2R	9656194	2R_9656194_SNP [dm3] 2R_13768689_SNP [dm6]	G	A	1.815e^-4	1	INTERGENIC
3R	15781734	3R_15781734_SNP [dm3] 3R_19956012_SNP [dm6]	G	T	1.824e^-4	1	INTRON Hs6st
2R	19006154	2R_19006154_SNP [dm3] 2R_23118631_SNP [dm6]	G	A	1.840e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14720485	X_14720485_SNP [dm3] X_14826452_SNP [dm6]	T	C	1.853e^-4	1	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20383568	2L_20383568_SNP [dm3] 2L_20383568_SNP [dm6]	C	T	1.856e^-4	1	INTERGENIC
3R	25584317	3R_25584317_SNP [dm3] 3R_29758595_SNP [dm6]	T	C	1.861e^-4	1	INTRON CR44953
2L	3574190	2L_3574190_SNP [dm3] 2L_3574190_SNP [dm6]	C	T	1.864e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	8346552	X_8346552_SNP [dm3] X_8452519_SNP [dm6]	G	A	1.865e^-4	1	INTRON org-1	TF binding site mE1_TFBS_cad
2R	13270943	2R_13270943_SNP [dm3] 2R_17383438_SNP [dm6]	T	C	1.867e^-4	1	INTERGENIC
2L	1240429	2L_1240429_SNP [dm3] 2L_1240429_SNP [dm6]	A	G	1.874e^-4	1	NON_SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
3R	14994782	3R_14994782_SNP [dm3] 3R_19169060_SNP [dm6]	A	G	1.881e^-4	1	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14595656	3R_14595656_SNP [dm3] 3R_18769934_SNP [dm6]	A	T	1.885e^-4	1	INTRON CG7720
3R	15785812	3R_15785812_SNP [dm3] 3R_19960090_SNP [dm6]	G	A	1.911e^-4	1	INTRON Hs6st
2L	7030405	2L_7030405_SNP [dm3] 2L_7030405_SNP [dm6]	A	T	1.932e^-4	1	DOWNSTREAM Rab30 INTERGENIC
2L	1255299	2L_1255299_SNP [dm3] 2L_1255299_SNP [dm6]	C	T	1.932e^-4	1	INTERGENIC
2R	10997744	2R_10997744_SNP [dm3] 2R_15110239_SNP [dm6]	T	G	1.941e^-4	1	INTERGENIC
2L	8240301	2L_8240301_SNP [dm3] 2L_8240301_SNP [dm6]	C	A	1.957e^-4	1	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11617747	3L_11617747_SNP [dm3] 3L_11624647_SNP [dm6]	A	C	1.966e^-4	1	UTR_3_PRIME CG6083 UPSTREAM CG6084
2R	14419409	2R_14419409_SNP [dm3] 2R_18531904_SNP [dm6]	C	G	1.973e^-4	1	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3441368	3R_3441368_SNP [dm3] 3R_7615646_SNP [dm6]	C	T	1.995e^-4	1	INTRON CG34127
3R	10408651	3R_10408651_SNP [dm3] 3R_14582929_SNP [dm6]	C	G	1.998e^-4	1	INTRON stumps
2L	5210055	2L_5210055_SNP [dm3] 2L_5210055_SNP [dm6]	T	C	2.000e^-4	1	UPSTREAM Cyp28d1 DOWNSTREAM Cyp28d2 INTERGENIC
2L	13758575	2L_13758575_SNP [dm3] 2L_13758575_SNP [dm6]	G	A	2.005e^-4	1	INTRON TM9SF4
3L	2586667	3L_2586667_SNP [dm3] 3L_2586667_SNP [dm6]	T	G	2.013e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3959743	3L_3959743_SNP [dm3] 3L_3959743_SNP [dm6]	T	C	2.017e^-4	1	NON_SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23964222	3R_23964222_SNP [dm3] 3R_28138500_SNP [dm6]	T	A	2.027e^-4	1	INTERGENIC
2R	12460330	2R_12460330_SNP [dm3] 2R_16572825_SNP [dm6]	A	T	2.032e^-4	1	INTRON CG4927
3R	26527494	3R_26527494_SNP [dm3] 3R_30701772_SNP [dm6]	C	T	2.035e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	2398200	2L_2398200_SNP [dm3] 2L_2398200_SNP [dm6]	T	C	2.035e^-4	1	INTRON VGlut
2L	21019069	2L_21019069_SNP [dm3] 2L_21019069_SNP [dm6]	T	C	2.041e^-4	1	INTRON CG42238
2L	2338755	2L_2338755_SNP [dm3] 2L_2338755_SNP [dm6]	T	C	2.041e^-4	1	INTRON CG9967 & 1 other
2R	11873716	2R_11873716_SNP [dm3] 2R_15986211_SNP [dm6]	G	A	2.055e^-4	1	INTRON Strn-Mlck
2R	10621883	2R_10621883_SNP [dm3] 2R_14734378_SNP [dm6]	C	T	2.060e^-4	1	INTERGENIC
3L	2586674	3L_2586674_SNP [dm3] 3L_2586674_SNP [dm6]	C	A	2.064e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16610349	X_16610349_SNP [dm3] X_16716316_SNP [dm6]	A	C	2.065e^-4	1	INTRON CG34325
2R	16852411	2R_16852411_SNP [dm3] 2R_20964906_SNP [dm6]	C	T	2.074e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1359354	3L_1359354_SNP [dm3] 3L_1359354_SNP [dm6]	C	A	2.081e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2241392	3R_2241392_SNP [dm3] 3R_6415670_SNP [dm6]	G	C	2.083e^-4	1	INTRON gpp
X	7699279	X_7699279_SNP [dm3] X_7805246_SNP [dm6]	G	T	2.106e^-4	1	INTERGENIC
3R	14878294	3R_14878294_SNP [dm3] 3R_19052572_SNP [dm6]	T	G	2.124e^-4	1	INTRON cdi
2L	1692534	2L_1692534_SNP [dm3] 2L_1692534_SNP [dm6]	T	C	2.141e^-4	1	INTRON chinmo
3R	21156154	3R_21156154_SNP [dm3] 3R_25330432_SNP [dm6]	G	A	2.141e^-4	1	SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
2R	17911989	2R_17911989_SNP [dm3] 2R_22024484_SNP [dm6]	T	C	2.151e^-4	1	INTRON CG34370
X	10751490	X_10751490_SNP [dm3] X_10857457_SNP [dm6]	A	G	2.163e^-4	1	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5487952	3L_5487952_SNP [dm3] 3L_5494852_SNP [dm6]	G	A	2.163e^-4	1	UPSTREAM CR44520 INTERGENIC
2L	14512356	2L_14512356_SNP [dm3] 2L_14512356_SNP [dm6]	T	A	2.169e^-4	1	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	6107519	X_6107519_SNP [dm3] X_6213486_SNP [dm6]	A	C	2.172e^-4	1	INTERGENIC
3L	3959745	3L_3959745_SNP [dm3] 3L_3959745_SNP [dm6]	T	C	2.176e^-4	1	SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11625028	2R_11625028_SNP [dm3] 2R_15737523_SNP [dm6]	C	T	2.192e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19885104	2R_19885104_SNP [dm3] 2R_23997581_SNP [dm6]	C	A	2.201e^-4	1	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16202355	X_16202355_SNP [dm3] X_16308322_SNP [dm6]	A	G	2.210e^-4	1	UTR_5_PRIME CG9914 DOWNSTREAM CG3679 EXON CR45485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17653715	X_17653715_DEL [dm3] X_17759682_DEL [dm6]	CAAG	C	2.219e^-4	1	INTERGENIC
2R	10341940	2R_10341940_SNP [dm3] 2R_14454435_SNP [dm6]	A	T	2.231e^-4	1	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12642816	3R_12642816_SNP [dm3] 3R_16817094_SNP [dm6]	T	G	2.240e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_dl
X	11375861	X_11375861_SNP [dm3] X_11481828_SNP [dm6]	G	C	2.261e^-4	1	NON_SYNONYMOUS_CODING Cyp4g15	TF binding site mE1_TFBS_chinmo
2L	7289465	2L_7289465_SNP [dm3] 2L_7289465_SNP [dm6]	A	G	2.270e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6107921	X_6107921_SNP [dm3] X_6213888_SNP [dm6]	C	G	2.282e^-4	1	INTERGENIC
2R	16805224	2R_16805224_SNP [dm3] 2R_20917719_SNP [dm6]	T	C	2.284e^-4	1	INTRON Rx
2L	14018555	2L_14018555_SNP [dm3] 2L_14018555_SNP [dm6]	C	T	2.289e^-4	1	SYNONYMOUS_CODING bgm UPSTREAM CR44849 DOWNSTREAM NimC3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9643663	2R_9643663_SNP [dm3] 2R_13756158_SNP [dm6]	G	C	2.296e^-4	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
3R	14886379	3R_14886379_DEL [dm3] 3R_19060657_DEL [dm6]	GGCTGGACCACAAACTTC...	G	2.297e^-4	1	INTRON cdi
3L	3959742	3L_3959742_SNP [dm3] 3L_3959742_SNP [dm6]	T	C	2.297e^-4	1	SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13196419	3R_13196419_INS [dm3] 3R_17370697_INS [dm6]	C	CACATTTTTTCCGCTGCAAT...	2.306e^-4	1	DOWNSTREAM CR44256 INTERGENIC
3R	3813206	3R_3813206_SNP [dm3] 3R_7987484_SNP [dm6]	T	C	2.318e^-4	1	INTRON CG2781
3R	21969756	3R_21969756_SNP [dm3] 3R_26144034_SNP [dm6]	C	T	2.329e^-4	1	INTERGENIC
2L	14020338	2L_14020338_SNP [dm3] 2L_14020338_SNP [dm6]	T	G	2.330e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8578185	2L_8578185_SNP [dm3] 2L_8578185_SNP [dm6]	G	A	2.333e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17911988	2R_17911988_SNP [dm3] 2R_22024483_SNP [dm6]	A	G	2.353e^-4	1	INTRON CG34370
3R	24363634	3R_24363634_SNP [dm3] 3R_28537912_SNP [dm6]	T	G	2.354e^-4	1	INTRON Ppn
2R	8295351	2R_8295351_SNP [dm3] 2R_12407846_SNP [dm6]	A	T	2.372e^-4	1	UTR_5_PRIME Cpr49Ag DOWNSTREAM Cpr49Af
2R	14294873	2R_14294873_SNP [dm3] 2R_18407368_SNP [dm6]	C	T	2.378e^-4	1	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4961996	3L_4961996_SNP [dm3] 3L_4961996_SNP [dm6]	A	G	2.386e^-4	1	INTRON Con
2L	14020692	2L_14020692_SNP [dm3] 2L_14020692_SNP [dm6]	G	C	2.391e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5993386	X_5993386_SNP [dm3] X_6099353_SNP [dm6]	G	A	2.392e^-4	1	INTRON Nep1
X	2993860	X_2993860_SNP [dm3] X_3099827_SNP [dm6]	T	A	2.395e^-4	1	UTR_5_PRIME kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	2339252	2L_2339252_SNP [dm3] 2L_2339252_SNP [dm6]	A	G	2.414e^-4	1	SYNONYMOUS_CODING eys INTRON CG9967
2R	10091864	2R_10091864_SNP [dm3] 2R_14204359_SNP [dm6]	A	T	2.415e^-4	1	INTRON Sox15	regulatory region REDfly_CRMs
2L	11932163	2L_11932163_SNP [dm3] 2L_11932163_SNP [dm6]	C	A	2.418e^-4	1	INTERGENIC
3L	12095221	3L_12095221_SNP [dm3] 3L_12102121_SNP [dm6]	G	T	2.432e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	3577855	2L_3577855_SNP [dm3] 2L_3577855_SNP [dm6]	C	T	2.435e^-4	1	DOWNSTREAM sob INTERGENIC
3R	18035983	3R_18035983_SNP [dm3] 3R_22210261_SNP [dm6]	G	A	2.443e^-4	1	UPSTREAM CR45224 INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13196070	3R_13196070_SNP [dm3] 3R_17370348_SNP [dm6]	T	C	2.445e^-4	1	DOWNSTREAM CR44256 INTERGENIC
X	21911040	X_21911040_SNP [dm3] X_22509204_SNP [dm6]	G	A	2.446e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11358982	3L_11358982_SNP [dm3] 3L_11365882_SNP [dm6]	A	G	2.455e^-4	1	UPSTREAM CG6163 EXON CR45036	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5232292	2L_5232292_SNP [dm3] 2L_5232292_SNP [dm6]	G	A	2.469e^-4	1	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5533142	X_5533142_SNP [dm3] X_5639109_SNP [dm6]	C	A	2.478e^-4	1	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11501462	2L_11501462_SNP [dm3] 2L_11501462_SNP [dm6]	T	A	2.483e^-4	1	UPSTREAM spz4 INTERGENIC
3L	5712811	3L_5712811_SNP [dm3] 3L_5719711_SNP [dm6]	C	T	2.492e^-4	1	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3R	18079582	3R_18079582_SNP [dm3] 3R_22253860_SNP [dm6]	G	T	2.499e^-4	1	INTRON SKIP
2L	14020653	2L_14020653_SNP [dm3] 2L_14020653_SNP [dm6]	C	T	2.501e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13196926	3R_13196926_SNP [dm3] 3R_17371204_SNP [dm6]	C	T	2.507e^-4	1	DOWNSTREAM CR44256 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24398559	3R_24398559_SNP [dm3] 3R_28572837_SNP [dm6]	T	C	2.507e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12878553	2R_12878553_DEL [dm3] 2R_16991048_DEL [dm6]	ATCAAA	A	2.513e^-4	1	INTRON Cbp53E
3L	18266425	3L_18266425_SNP [dm3] 3L_18273325_SNP [dm6]	C	T	2.513e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18776988	2R_18776988_SNP [dm3] 2R_22889465_SNP [dm6]	C	A	2.518e^-4	1	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	16655517	2R_16655517_SNP [dm3] 2R_20768012_SNP [dm6]	A	G	2.543e^-4	1	DOWNSTREAM CR44665 INTERGENIC
2R	12552968	2R_12552968_SNP [dm3] 2R_16665463_SNP [dm6]	C	T	2.549e^-4	1	INTRON Picot
2R	16575378	2R_16575378_SNP [dm3] 2R_20687873_SNP [dm6]	G	C	2.562e^-4	1	UPSTREAM Gr57a INTERGENIC
3R	3680619	3R_3680619_SNP [dm3] 3R_7854897_SNP [dm6]	T	A	2.562e^-4	1	UTR_3_PRIME CG34384 DOWNSTREAM CG34384 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14020684	2L_14020684_SNP [dm3] 2L_14020684_SNP [dm6]	C	G	2.569e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11999596	2R_11999596_SNP [dm3] 2R_16112091_SNP [dm6]	C	T	2.572e^-4	1	NON_SYNONYMOUS_CODING Asph	TF binding site BDTNP1_TFBS_twi
2R	11625040	2R_11625040_SNP [dm3] 2R_15737535_SNP [dm6]	G	C	2.572e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16949713	3L_16949713_SNP [dm3] 3L_16956613_SNP [dm6]	A	T	2.599e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4711685	2L_4711685_SNP [dm3] 2L_4711685_SNP [dm6]	T	A	2.601e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2L	4711716	2L_4711716_SNP [dm3] 2L_4711716_SNP [dm6]	A	G	2.601e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	13710421	2R_13710421_SNP [dm3] 2R_17822916_SNP [dm6]	C	T	2.616e^-4	1	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2R	8295352	2R_8295352_SNP [dm3] 2R_12407847_SNP [dm6]	C	T	2.625e^-4	1	UTR_5_PRIME Cpr49Ag DOWNSTREAM Cpr49Af
3L	3544865	3L_3544865_SNP [dm3] 3L_3544865_SNP [dm6]	A	C	2.631e^-4	1	UPSTREAM Eip63E INTRON Eip63E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	19782679	3R_19782679_SNP [dm3] 3R_23956957_SNP [dm6]	T	C	2.634e^-4	1	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2L	14015744	2L_14015744_SNP [dm3] 2L_14015744_SNP [dm6]	T	G	2.637e^-4	1	INTRON bgm	TF binding site mE1_TFBS_cad
2R	15696305	2R_15696305_SNP [dm3] 2R_19808800_SNP [dm6]	A	G	2.639e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15696311	2R_15696311_SNP [dm3] 2R_19808806_SNP [dm6]	T	A	2.639e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15696327	2R_15696327_SNP [dm3] 2R_19808822_SNP [dm6]	T	A	2.639e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16792914	2L_16792914_SNP [dm3] 2L_16792914_SNP [dm6]	G	A	2.642e^-4	1	NON_SYNONYMOUS_CODING CG17928
2L	17682564	2L_17682564_SNP [dm3] 2L_17682564_SNP [dm6]	T	C	2.648e^-4	1	INTRON CadN
2L	3389225	2L_3389225_SNP [dm3] 2L_3389225_SNP [dm6]	A	G	2.650e^-4	1	UPSTREAM CR44791 & 1 other INTERGENIC
2L	10187384	2L_10187384_SNP [dm3] 2L_10187384_SNP [dm6]	G	A	2.650e^-4	1	INTRON Sur
2R	19857988	2R_19857988_SNP [dm3] 2R_23970465_SNP [dm6]	G	T	2.676e^-4	1	UTR_5_PRIME CG3065 UPSTREAM CG10904	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17692638	2L_17692638_DEL [dm3] 2L_17692638_DEL [dm6]	CC	C	2.677e^-4	1	INTRON CadN
3R	3763874	3R_3763874_SNP [dm3] 3R_7938152_SNP [dm6]	G	A	2.679e^-4	1	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1254236	2L_1254236_SNP [dm3] 2L_1254236_SNP [dm6]	C	G	2.679e^-4	1	INTERGENIC
3R	25584297	3R_25584297_SNP [dm3] 3R_29758575_SNP [dm6]	A	T	2.684e^-4	1	INTRON CR44953
2L	11492763	2L_11492763_SNP [dm3] 2L_11492763_SNP [dm6]	G	T	2.686e^-4	1	INTERGENIC
2L	1282283	2L_1282283_SNP [dm3] 2L_1282283_SNP [dm6]	G	A	2.691e^-4	1	INTRON robo3
3L	19159344	3L_19159344_SNP [dm3] 3L_19166244_SNP [dm6]	G	T	2.691e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	11503275	2L_11503275_SNP [dm3] 2L_11503275_SNP [dm6]	T	C	2.703e^-4	1	INTRON spz4
2L	1266239	2L_1266239_SNP [dm3] 2L_1266239_SNP [dm6]	T	G	2.710e^-4	1	INTRON robo3
3L	15621397	3L_15621397_SNP [dm3] 3L_15628297_SNP [dm6]	A	G	2.711e^-4	1	INTRON comm3
2L	14020437	2L_14020437_SNP [dm3] 2L_14020437_SNP [dm6]	G	A	2.722e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8972074	2L_8972074_DEL [dm3] 2L_8972074_DEL [dm6]	TCGT	T	2.724e^-4	1	CODON_DELETION CG9541
3R	24671442	3R_24671442_SNP [dm3] 3R_28845720_SNP [dm6]	G	A	2.733e^-4	1	UTR_5_PRIME spg UPSTREAM Apc INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11927749	2L_11927749_SNP [dm3] 2L_11927749_SNP [dm6]	A	T	2.745e^-4	1	INTRON Pde1c
3R	19348175	3R_19348175_SNP [dm3] 3R_23522453_SNP [dm6]	A	C	2.758e^-4	1	UTR_3_PRIME CG10175 UPSTREAM CG10177 DOWNSTREAM CG10175	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	3650076	3R_3650076_SNP [dm3] 3R_7824354_SNP [dm6]	A	G	2.770e^-4	1	INTRON CG34384
X	4535956	X_4535956_SNP [dm3] X_4641923_SNP [dm6]	T	C	2.776e^-4	1	SYNONYMOUS_CODING CG3062 UTR_5_PRIME CG3081 UPSTREAM CG3081	TF binding site mE1_TFBS_chinmo
3R	19742151	3R_19742151_SNP [dm3] 3R_23916429_SNP [dm6]	G	T	2.780e^-4	1	INTRON sba
2R	8665628	2R_8665628_SNP [dm3] 2R_12778123_SNP [dm6]	T	C	2.797e^-4	1	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	1126494	2R_1126494_DEL [dm3] 2R_5238989_DEL [dm6]	AT	A	2.800e^-4	1	INTRON Nipped-A	transposable element FlyBase
3R	3655859	3R_3655859_SNP [dm3] 3R_7830137_SNP [dm6]	G	C	2.815e^-4	1	INTRON CG34384
3L	10183912	3L_10183912_SNP [dm3] 3L_10190812_SNP [dm6]	A	G	2.819e^-4	1	SYNONYMOUS_CODING ect
3L	2586867	3L_2586867_SNP [dm3] 3L_2586867_SNP [dm6]	T	C	2.821e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9351654	3R_9351654_SNP [dm3] 3R_13525932_SNP [dm6]	A	G	2.827e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9658119	2R_9658119_SNP [dm3] 2R_13770614_SNP [dm6]	A	G	2.829e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1111096	2R_1111096_SNP [dm3] 2R_5223591_SNP [dm6]	A	T	2.830e^-4	1	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
2R	16020214	2R_16020214_SNP [dm3] 2R_20132709_SNP [dm6]	C	T	2.834e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14020634	2L_14020634_SNP [dm3] 2L_14020634_SNP [dm6]	G	T	2.834e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24195725	3R_24195725_INS [dm3] 3R_28370003_INS [dm6]	T	TGTTA	2.844e^-4	1	INTERGENIC
2R	9450170	2R_9450170_SNP [dm3] 2R_13562665_SNP [dm6]	G	T	2.859e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	16113451	3R_16113451_DEL [dm3] 3R_20287729_DEL [dm6]	ATG	A	2.865e^-4	1	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9907844	2R_9907844_SNP [dm3] 2R_14020339_SNP [dm6]	G	C	2.872e^-4	1	INTRON mam
X	642549	X_642549_SNP [dm3] X_748516_SNP [dm6]	G	T	2.872e^-4	1	UTR_3_PRIME sdk DOWNSTREAM CG13362
2R	18694590	2R_18694590_SNP [dm3] 2R_22807085_SNP [dm6]	G	A	2.891e^-4	1	UPSTREAM CycB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	2494332	2L_2494332_SNP [dm3] 2L_2494332_SNP [dm6]	G	C	2.895e^-4	1	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7516887	2R_7516887_INS [dm3] 2R_11629382_INS [dm6]	C	CC	2.899e^-4	1	SPLICE_SITE_REGION CG9005 INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8970524	2L_8970524_SNP [dm3] 2L_8970524_SNP [dm6]	A	G	2.901e^-4	1	UTR_3_PRIME CG18088 & 1 other DOWNSTREAM CG18088
3L	3714180	3L_3714180_SNP [dm3] 3L_3714180_SNP [dm6]	T	C	2.901e^-4	1	SYNONYMOUS_CODING CG43089 DOWNSTREAM CG32264
3L	3308444	3L_3308444_SNP [dm3] 3L_3308444_SNP [dm6]	A	G	2.905e^-4	1	INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3515293	X_3515293_SNP [dm3] X_3621260_SNP [dm6]	T	A	2.915e^-4	1	INTRON AstA-R1
2L	4875352	2L_4875352_SNP [dm3] 2L_4875352_SNP [dm6]	G	A	2.916e^-4	1	UTR_3_PRIME pog DOWNSTREAM pog
3R	3671940	3R_3671940_SNP [dm3] 3R_7846218_SNP [dm6]	G	C	2.929e^-4	1	NON_SYNONYMOUS_CODING CG34384
X	19165328	X_19165328_SNP [dm3] X_19271295_SNP [dm6]	G	A	2.930e^-4	1	SYNONYMOUS_CODING Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1687665	2L_1687665_SNP [dm3] 2L_1687665_SNP [dm6]	T	G	2.940e^-4	1	INTRON chinmo	TF binding site mE1_TFBS_HSA
3R	20048925	3R_20048925_SNP [dm3] 3R_24223203_SNP [dm6]	A	T	2.944e^-4	1	NON_SYNONYMOUS_CODING cav DOWNSTREAM Spps
2L	1282286	2L_1282286_SNP [dm3] 2L_1282286_SNP [dm6]	G	C	2.953e^-4	1	INTRON robo3
2L	2338652	2L_2338652_SNP [dm3] 2L_2338652_SNP [dm6]	G	C	2.955e^-4	1	INTRON CG9967 & 1 other
2L	14011493	2L_14011493_SNP [dm3] 2L_14011493_SNP [dm6]	C	T	2.962e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
X	12702784	X_12702784_SNP [dm3] X_12808751_SNP [dm6]	G	A	2.962e^-4	1	INTRON Pde9
2L	14512388	2L_14512388_SNP [dm3] 2L_14512388_SNP [dm6]	G	T	2.974e^-4	1	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	18266220	3L_18266220_SNP [dm3] 3L_18273120_SNP [dm6]	G	A	2.976e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	1666368	2L_1666368_SNP [dm3] 2L_1666368_SNP [dm6]	A	G	2.981e^-4	1	INTRON chinmo
3R	3651230	3R_3651230_SNP [dm3] 3R_7825508_SNP [dm6]	C	T	2.981e^-4	1	INTRON CG34384
2R	5591335	2R_5591335_SNP [dm3] 2R_9703830_SNP [dm6]	C	T	2.983e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16492915	3R_16492915_SNP [dm3] 3R_20667193_SNP [dm6]	G	A	2.989e^-4	1	INTERGENIC
2R	14334702	2R_14334702_SNP [dm3] 2R_18447197_SNP [dm6]	C	T	2.991e^-4	1	UTR_5_PRIME CG30120 UTR_3_PRIME CG5189 DOWNSTREAM Prp19	TF binding site BDTNP1_TFBS_Med
2R	5222356	2R_5222356_SNP [dm3] 2R_9334851_SNP [dm6]	T	A	2.994e^-4	1	INTRON CG13954 & 1 other
3L	22784680	3L_22784680_SNP [dm3] 3L_22791580_SNP [dm6]	T	C	3.009e^-4	1	UTR_3_PRIME jim
3L	13516183	3L_13516183_INS [dm3] 3L_13523083_INS [dm6]	G	AAAGA	3.012e^-4	1	UTR_3_PRIME bru-3
2R	5316637	2R_5316637_SNP [dm3] 2R_9429132_SNP [dm6]	A	G	3.021e^-4	1	INTRON Pdk
3L	8536241	3L_8536241_SNP [dm3] 3L_8543141_SNP [dm6]	C	A	3.025e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9996865	3L_9996865_SNP [dm3] 3L_10003765_SNP [dm6]	A	G	3.031e^-4	1	START_GAINED dpr6 UTR_5_PRIME dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13967685	2L_13967685_SNP [dm3] 2L_13967685_SNP [dm6]	G	C	3.034e^-4	1	SYNONYMOUS_CODING NimB3 UPSTREAM NimB2 DOWNSTREAM NimB4
X	9119116	X_9119116_SNP [dm3] X_9225083_SNP [dm6]	G	A	3.044e^-4	1	UPSTREAM CG15370 INTERGENIC
2R	20548241	2R_20548241_DEL [dm3] 2R_24660718_DEL [dm6]	TTTCTCTTCCTCGGCCCCCA...	C	3.047e^-4	1	UPSTREAM CG3663 INTERGENIC
3L	12522461	3L_12522461_SNP [dm3] 3L_12529361_SNP [dm6]	A	T	3.059e^-4	1	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9777924	X_9777924_SNP [dm3] X_9883891_SNP [dm6]	C	T	3.063e^-4	1	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
X	10825655	X_10825655_SNP [dm3] X_10931622_SNP [dm6]	A	T	3.070e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	24398554	3R_24398554_SNP [dm3] 3R_28572832_SNP [dm6]	A	G	3.070e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2853531	3L_2853531_SNP [dm3] 3L_2853531_SNP [dm6]	T	C	3.077e^-4	1	INTRON CG43444
2R	4665048	2R_4665048_SNP [dm3] 2R_8777543_SNP [dm6]	C	G	3.098e^-4	1	INTERGENIC
3R	15707731	3R_15707731_SNP [dm3] 3R_19882009_SNP [dm6]	C	T	3.115e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16657578	2R_16657578_SNP [dm3] 2R_20770073_SNP [dm6]	C	A	3.121e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3636093	3R_3636093_SNP [dm3] 3R_7810371_SNP [dm6]	C	T	3.124e^-4	1	UPSTREAM CG31472 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	3499441	3R_3499441_SNP [dm3] 3R_7673719_SNP [dm6]	T	C	3.131e^-4	1	INTRON Nlg1
2L	16112140	2L_16112140_SNP [dm3] 2L_16112140_SNP [dm6]	T	G	3.132e^-4	1	INTERGENIC
3R	24485992	3R_24485992_SNP [dm3] 3R_28660270_SNP [dm6]	G	T	3.142e^-4	1	INTERGENIC
3R	15781713	3R_15781713_SNP [dm3] 3R_19955991_SNP [dm6]	C	G	3.142e^-4	1	INTRON Hs6st
3L	11327839	3L_11327839_SNP [dm3] 3L_11334739_SNP [dm6]	G	A	3.147e^-4	1	INTERGENIC
3R	10254282	3R_10254282_SNP [dm3] 3R_14428560_SNP [dm6]	A	C	3.159e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3R	990115	3R_990115_SNP [dm3] 3R_5164393_SNP [dm6]	C	T	3.170e^-4	1	UPSTREAM dpr16 INTRON dpr16
2L	13046606	2L_13046606_SNP [dm3] 2L_13046606_SNP [dm6]	G	T	3.171e^-4	1	INTRON CG9932
2L	8972061	2L_8972061_SNP [dm3] 2L_8972061_SNP [dm6]	G	A	3.179e^-4	1	SYNONYMOUS_CODING CG9541
3L	8536299	3L_8536299_SNP [dm3] 3L_8543199_SNP [dm6]	T	C	3.191e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6973511	2L_6973511_SNP [dm3] 2L_6973511_SNP [dm6]	A	G	3.213e^-4	1	DOWNSTREAM CR43142 INTRON uif
2R	10997804	2R_10997804_SNP [dm3] 2R_15110299_SNP [dm6]	C	G	3.215e^-4	1	INTERGENIC
X	7648915	X_7648915_SNP [dm3] X_7754882_SNP [dm6]	G	C	3.216e^-4	1	INTERGENIC
3L	3546369	3L_3546369_SNP [dm3] 3L_3546369_SNP [dm6]	T	C	3.217e^-4	1	INTRON Eip63E
3L	2826176	3L_2826176_SNP [dm3] 3L_2826176_SNP [dm6]	G	C	3.225e^-4	1	INTRON CG43444
2R	18871817	2R_18871817_SNP [dm3] 2R_22984294_SNP [dm6]	A	G	3.230e^-4	1	UTR_3_PRIME CG32833 UPSTREAM CG32834 DOWNSTREAM mir-4939	TF binding site mE1_TFBS_cad
2L	3882297	2L_3882297_SNP [dm3] 2L_3882297_SNP [dm6]	T	G	3.232e^-4	1	INTRON capu
2R	7446796	2R_7446796_SNP [dm3] 2R_11559291_SNP [dm6]	T	C	3.245e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9753241	2R_9753241_SNP [dm3] 2R_13865736_SNP [dm6]	C	A	3.257e^-4	1	INTRON shot
3R	19779927	3R_19779927_SNP [dm3] 3R_23954205_SNP [dm6]	T	C	3.266e^-4	1	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
X	10004108	X_10004108_SNP [dm3] X_10110075_SNP [dm6]	T	C	3.277e^-4	1	INTRON RhoU
2R	9099989	2R_9099989_INS [dm3] 2R_13212484_INS [dm6]	A	ATGTACATATA...	3.279e^-4	1	UTR_3_PRIME AQP UPSTREAM CG30058 & 2 others
2L	2856905	2L_2856905_SNP [dm3] 2L_2856905_SNP [dm6]	A	C	3.283e^-4	1	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	12548988	2R_12548988_SNP [dm3] 2R_16661483_SNP [dm6]	T	C	3.293e^-4	1	INTRON Picot
2L	5792771	2L_5792771_SNP [dm3] 2L_5792771_SNP [dm6]	G	C	3.300e^-4	1	INTRON CG9171
3L	11416261	3L_11416261_SNP [dm3] 3L_11423161_SNP [dm6]	G	A	3.316e^-4	1	INTERGENIC
2R	14339150	2R_14339150_SNP [dm3] 2R_18451645_SNP [dm6]	G	T	3.338e^-4	1	SYNONYMOUS_CODING CG5190 UPSTREAM Prp19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3691313	3R_3691313_SNP [dm3] 3R_7865591_SNP [dm6]	T	A	3.342e^-4	1	INTRON CG17816
2R	10945316	2R_10945316_SNP [dm3] 2R_15057811_SNP [dm6]	A	C	3.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1261440	2L_1261440_SNP [dm3] 2L_1261440_SNP [dm6]	T	C	3.352e^-4	1	INTRON robo3
2R	10339823	2R_10339823_SNP [dm3] 2R_14452318_SNP [dm6]	T	C	3.358e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_chinmo
2R	12878493	2R_12878493_SNP [dm3] 2R_16990988_SNP [dm6]	T	C	3.367e^-4	1	INTRON Cbp53E
2L	17677099	2L_17677099_SNP [dm3] 2L_17677099_SNP [dm6]	A	T	3.371e^-4	1	INTRON CadN
3R	16624826	3R_16624826_SNP [dm3] 3R_20799104_SNP [dm6]	T	C	3.371e^-4	1	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11350805	3L_11350805_INS [dm3] 3L_11357705_INS [dm6]	T	TAGGTTTCGAAAGAT...	3.398e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8972070	2L_8972070_SNP [dm3] 2L_8972070_SNP [dm6]	A	C	3.399e^-4	1	SYNONYMOUS_CODING CG9541
3R	3651597	3R_3651597_SNP [dm3] 3R_7825875_SNP [dm6]	A	T	3.409e^-4	1	INTRON CG34384
3R	24671129	3R_24671129_MNP [dm3] 3R_28845407_MNP [dm6]	ACGG	TAAT	3.411e^-4	1	SPLICE_SITE_DONOR spg SPLICE_SITE_REGION spg UTR_5_PRIME spg UPSTREAM Apc INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11502550	2L_11502550_SNP [dm3] 2L_11502550_SNP [dm6]	C	G	3.414e^-4	1	INTRON spz4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19689887	3L_19689887_SNP [dm3] 3L_19696787_SNP [dm6]	T	G	3.427e^-4	1	INTERGENIC
X	10057016	X_10057016_SNP [dm3] X_10162983_SNP [dm6]	A	C	3.428e^-4	1	INTRON CR44894 & 1 other
X	3857674	X_3857674_SNP [dm3] X_3963641_SNP [dm6]	A	G	3.435e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24398472	3R_24398472_SNP [dm3] 3R_28572750_SNP [dm6]	G	A	3.437e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15787548	3R_15787548_SNP [dm3] 3R_19961826_SNP [dm6]	T	C	3.443e^-4	1	INTRON Hs6st
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	3.446e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9740042	X_9740042_SNP [dm3] X_9846009_SNP [dm6]	G	A	3.446e^-4	1	SYNONYMOUS_CODING CG32698
3L	8536344	3L_8536344_SNP [dm3] 3L_8543244_SNP [dm6]	C	G	3.459e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7414171	3L_7414171_SNP [dm3] 3L_7421071_SNP [dm6]	G	C	3.477e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	18671289	3L_18671289_SNP [dm3] 3L_18678189_SNP [dm6]	G	A	3.486e^-4	1	DOWNSTREAM GNBP1 INTERGENIC
2L	5792774	2L_5792774_SNP [dm3] 2L_5792774_SNP [dm6]	T	G	3.496e^-4	1	INTRON CG9171
2L	5792779	2L_5792779_SNP [dm3] 2L_5792779_SNP [dm6]	A	G	3.496e^-4	1	INTRON CG9171
2R	19889660	2R_19889660_SNP [dm3] 2R_24002137_SNP [dm6]	G	A	3.501e^-4	1	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2L	1630652	2L_1630652_SNP [dm3] 2L_1630652_SNP [dm6]	A	T	3.518e^-4	1	INTERGENIC
3L	6737402	3L_6737402_SNP [dm3] 3L_6744302_SNP [dm6]	A	G	3.518e^-4	1	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
X	4668175	X_4668175_SNP [dm3] X_4774142_SNP [dm6]	T	C	3.522e^-4	1	DOWNSTREAM CR45515 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14597034	3L_14597034_SNP [dm3] 3L_14603934_SNP [dm6]	T	G	3.524e^-4	1	INTERGENIC
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	3.528e^-4	1	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2L	8240216	2L_8240216_SNP [dm3] 2L_8240216_SNP [dm6]	C	T	3.534e^-4	1	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10890131	2L_10890131_INS [dm3] 2L_10890131_INS [dm6]	G	GTATT	3.558e^-4	1	INTERGENIC
2L	11497270	2L_11497270_SNP [dm3] 2L_11497270_SNP [dm6]	A	G	3.567e^-4	1	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
X	10751574	X_10751574_SNP [dm3] X_10857541_SNP [dm6]	T	C	3.571e^-4	1	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	24398622	3R_24398622_SNP [dm3] 3R_28572900_SNP [dm6]	T	A	3.584e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9089006	2R_9089006_SNP [dm3] 2R_13201501_SNP [dm6]	C	T	3.589e^-4	1	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9183573	2R_9183573_SNP [dm3] 2R_13296068_SNP [dm6]	T	C	3.595e^-4	1	UPSTREAM Dh31-R INTERGENIC
2R	9910040	2R_9910040_SNP [dm3] 2R_14022535_SNP [dm6]	A	T	3.595e^-4	1	INTRON mam
2L	6968478	2L_6968478_SNP [dm3] 2L_6968478_SNP [dm6]	A	T	3.603e^-4	1	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	1908574	3L_1908574_SNP [dm3] 3L_1908574_SNP [dm6]	G	A	3.610e^-4	1	INTRON CG1887
3L	1908577	3L_1908577_SNP [dm3] 3L_1908577_SNP [dm6]	T	A	3.610e^-4	1	INTRON CG1887
2L	14619507	2L_14619507_DEL [dm3] 2L_14619507_DEL [dm6]	AA	A	3.619e^-4	1	DOWNSTREAM Adhr & 1 other INTRON osp
X	5015773	X_5015773_SNP [dm3] X_5121740_SNP [dm6]	C	A	3.622e^-4	1	INTRON rg & 1 other
3R	15673597	3R_15673597_SNP [dm3] 3R_19847875_SNP [dm6]	C	G	3.637e^-4	1	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18266268	3L_18266268_SNP [dm3] 3L_18273168_SNP [dm6]	T	A	3.639e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1255227	2L_1255227_SNP [dm3] 2L_1255227_SNP [dm6]	G	A	3.643e^-4	1	INTERGENIC
3R	4129204	3R_4129204_SNP [dm3] 3R_8303482_SNP [dm6]	T	G	3.644e^-4	1	SYNONYMOUS_CODING nac DOWNSTREAM mRpL1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	19104996	2R_19104996_SNP [dm3] 2R_23217473_SNP [dm6]	A	G	3.647e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14178742	3R_14178742_SNP [dm3] 3R_18353020_SNP [dm6]	C	A	3.647e^-4	1	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2241808	3R_2241808_SNP [dm3] 3R_6416086_SNP [dm6]	C	T	3.659e^-4	1	INTRON gpp
3L	10772993	3L_10772993_SNP [dm3] 3L_10779893_SNP [dm6]	C	G	3.666e^-4	1	INTERGENIC
3R	15795146	3R_15795146_INS [dm3] 3R_19969424_INS [dm6]	G	GGG	3.680e^-4	1	INTRON Hs6st
3L	18671250	3L_18671250_SNP [dm3] 3L_18678150_SNP [dm6]	C	T	3.680e^-4	1	DOWNSTREAM GNBP1 INTERGENIC
3L	15616564	3L_15616564_SNP [dm3] 3L_15623464_SNP [dm6]	C	T	3.699e^-4	1	UTR_3_PRIME CG7372 INTRON comm3
2L	4840650	2L_4840650_SNP [dm3] 2L_4840650_SNP [dm6]	A	G	3.699e^-4	1	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4840651	2L_4840651_SNP [dm3] 2L_4840651_SNP [dm6]	T	A	3.699e^-4	1	DOWNSTREAM mxt INTRON CG12194	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3638905	3R_3638905_SNP [dm3] 3R_7813183_SNP [dm6]	G	A	3.707e^-4	1	DOWNSTREAM CG31473 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	4672474	2R_4672474_SNP [dm3] 2R_8784969_SNP [dm6]	T	C	3.710e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20105742	3R_20105742_SNP [dm3] 3R_24280020_SNP [dm6]	G	A	3.719e^-4	1	INTRON CG13611	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5792793	2L_5792793_SNP [dm3] 2L_5792793_SNP [dm6]	T	G	3.730e^-4	1	INTRON CG9171
3L	11617746	3L_11617746_SNP [dm3] 3L_11624646_SNP [dm6]	G	T	3.742e^-4	1	UTR_3_PRIME CG6083 UPSTREAM CG6084
3R	1778044	3R_1778044_SNP [dm3] 3R_5952322_SNP [dm6]	C	T	3.760e^-4	1	INTRON CG34113
3L	12943912	3L_12943912_SNP [dm3] 3L_12950812_SNP [dm6]	G	A	3.766e^-4	1	INTERGENIC
3R	23805968	3R_23805968_SNP [dm3] 3R_27980246_SNP [dm6]	A	T	3.804e^-4	1	INTRON betaTub97EF
3R	3514420	3R_3514420_SNP [dm3] 3R_7688698_SNP [dm6]	C	T	3.811e^-4	1	INTRON Nlg1
3L	1908796	3L_1908796_SNP [dm3] 3L_1908796_SNP [dm6]	T	C	3.813e^-4	1	INTRON CG1887
3L	10772923	3L_10772923_SNP [dm3] 3L_10779823_SNP [dm6]	G	A	3.832e^-4	1	INTERGENIC
2L	8578175	2L_8578175_SNP [dm3] 2L_8578175_SNP [dm6]	T	C	3.834e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17645665	2L_17645665_SNP [dm3] 2L_17645665_SNP [dm6]	C	A	3.854e^-4	1	UPSTREAM CR45699 INTERGENIC
2L	14020649	2L_14020649_SNP [dm3] 2L_14020649_SNP [dm6]	C	A	3.864e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12554308	2R_12554308_SNP [dm3] 2R_16666803_SNP [dm6]	G	A	3.888e^-4	1	INTRON Picot
2R	12554335	2R_12554335_SNP [dm3] 2R_16666830_SNP [dm6]	A	G	3.888e^-4	1	INTRON Picot
3L	12819446	3L_12819446_SNP [dm3] 3L_12826346_SNP [dm6]	A	G	3.890e^-4	1	INTRON CG10960
3R	9458279	3R_9458279_SNP [dm3] 3R_13632557_SNP [dm6]	C	A	3.896e^-4	1	INTRON CG10841
2R	16573399	2R_16573399_SNP [dm3] 2R_20685894_SNP [dm6]	G	A	3.911e^-4	1	SYNONYMOUS_CODING Gr57a
3L	8216566	3L_8216566_SNP [dm3] 3L_8223466_SNP [dm6]	C	T	3.916e^-4	1	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12554286	2R_12554286_SNP [dm3] 2R_16666781_SNP [dm6]	A	G	3.923e^-4	1	INTRON Picot
3R	14178342	3R_14178342_SNP [dm3] 3R_18352620_SNP [dm6]	C	T	3.930e^-4	1	INTRON CG15803
3L	18266142	3L_18266142_SNP [dm3] 3L_18273042_SNP [dm6]	A	G	3.932e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17930823	2R_17930823_DEL [dm3] 2R_22043318_DEL [dm6]	CGCGTGGGCGAAGCCACC...	C	3.945e^-4	1	UPSTREAM PpD5 INTERGENIC
2R	18947961	2R_18947961_SNP [dm3] 2R_23060438_SNP [dm6]	G	A	3.955e^-4	1	SYNONYMOUS_CODING CG44252 DOWNSTREAM l_2_06496	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17932583	3R_17932583_SNP [dm3] 3R_22106861_SNP [dm6]	G	A	3.960e^-4	1	INTRON CG5778
2R	4036707	2R_4036707_SNP [dm3] 2R_8149202_SNP [dm6]	G	A	3.963e^-4	1	UPSTREAM kermit INTRON Lpin & 1 other	TF binding site mE1_TFBS_cad
3R	17851025	3R_17851025_SNP [dm3] 3R_22025303_SNP [dm6]	A	G	3.968e^-4	1	SYNONYMOUS_CODING CG6028 DOWNSTREAM mRpL35 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5316729	2R_5316729_SNP [dm3] 2R_9429224_SNP [dm6]	A	G	3.980e^-4	1	INTRON Pdk
2R	7214009	2R_7214009_SNP [dm3] 2R_11326504_SNP [dm6]	C	T	3.981e^-4	1	INTRON sha
2L	20368374	2L_20368374_SNP [dm3] 2L_20368374_SNP [dm6]	G	A	3.982e^-4	1	INTERGENIC
2R	10997745	2R_10997745_SNP [dm3] 2R_15110240_SNP [dm6]	G	A	3.983e^-4	1	INTERGENIC
3L	18266235	3L_18266235_SNP [dm3] 3L_18273135_SNP [dm6]	T	A	3.984e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	10890138	2L_10890138_SNP [dm3] 2L_10890138_SNP [dm6]	C	G	3.987e^-4	1	INTERGENIC
3L	2530992	3L_2530992_SNP [dm3] 3L_2530992_SNP [dm6]	G	T	4.001e^-4	1	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5792792	2L_5792792_SNP [dm3] 2L_5792792_SNP [dm6]	A	G	4.005e^-4	1	INTRON CG9171
2L	17677098	2L_17677098_SNP [dm3] 2L_17677098_SNP [dm6]	G	C	4.011e^-4	1	INTRON CadN
3R	2241436	3R_2241436_SNP [dm3] 3R_6415714_SNP [dm6]	A	G	4.017e^-4	1	INTRON gpp
3L	11350797	3L_11350797_SNP [dm3] 3L_11357697_SNP [dm6]	A	T	4.021e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19782740	3R_19782740_SNP [dm3] 3R_23957018_SNP [dm6]	A	T	4.035e^-4	1	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
2L	11492755	2L_11492755_SNP [dm3] 2L_11492755_SNP [dm6]	A	G	4.044e^-4	1	INTERGENIC
2L	4847866	2L_4847866_SNP [dm3] 2L_4847866_SNP [dm6]	C	T	4.048e^-4	1	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14885948	3R_14885948_SNP [dm3] 3R_19060226_SNP [dm6]	G	A	4.056e^-4	1	INTRON cdi
2R	7446789	2R_7446789_SNP [dm3] 2R_11559284_SNP [dm6]	T	C	4.060e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11172409	2L_11172409_SNP [dm3] 2L_11172409_SNP [dm6]	C	T	4.062e^-4	1	UPSTREAM Vm32E INTRON Ca-beta	TF binding site mE1_TFBS_cad
X	8074562	X_8074562_SNP [dm3] X_8180529_SNP [dm6]	T	A	4.071e^-4	1	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	11348081	3L_11348081_SNP [dm3] 3L_11354981_SNP [dm6]	C	T	4.084e^-4	1	INTERGENIC
2R	10089830	2R_10089830_SNP [dm3] 2R_14202325_SNP [dm6]	C	G	4.087e^-4	1	NON_SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	407505	X_407505_SNP [dm3] X_513472_SNP [dm6]	A	G	4.088e^-4	1	UTR_3_PRIME elav INTRON arg
2R	4184978	2R_4184978_SNP [dm3] 2R_8297473_SNP [dm6]	T	A	4.097e^-4	1	UPSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12942301	3L_12942301_SNP [dm3] 3L_12949201_SNP [dm6]	C	G	4.098e^-4	1	INTERGENIC
2R	9645271	2R_9645271_SNP [dm3] 2R_13757766_SNP [dm6]	A	G	4.106e^-4	1	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2L	8971086	2L_8971086_SNP [dm3] 2L_8971086_SNP [dm6]	G	A	4.109e^-4	1	SYNONYMOUS_CODING CG9541 DOWNSTREAM CG18088	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11892572	3R_11892572_SNP [dm3] 3R_16066850_SNP [dm6]	A	G	4.123e^-4	1	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15119237	2R_15119237_SNP [dm3] 2R_19231732_SNP [dm6]	T	C	4.135e^-4	1	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11363256	3L_11363256_SNP [dm3] 3L_11370156_SNP [dm6]	G	T	4.150e^-4	1	INTERGENIC
3R	26519675	3R_26519675_SNP [dm3] 3R_30693953_SNP [dm6]	G	C	4.151e^-4	1	UTR_3_PRIME CG12069 DOWNSTREAM CG12069
X	16400824	X_16400824_SNP [dm3] X_16506791_SNP [dm6]	G	C	4.154e^-4	1	INTRON para
3R	13837997	3R_13837997_SNP [dm3] 3R_18012275_SNP [dm6]	A	C	4.167e^-4	1	INTRON cpo
2L	14020435	2L_14020435_SNP [dm3] 2L_14020435_SNP [dm6]	C	G	4.173e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25183656	3R_25183656_SNP [dm3] 3R_29357934_SNP [dm6]	T	G	4.195e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	4.196e^-4	1	UPSTREAM CG44521 INTRON sif
2R	9805940	2R_9805940_SNP [dm3] 2R_13918435_SNP [dm6]	T	C	4.201e^-4	1	INTRON shot	TF binding site mE1_TFBS_Trl
2L	14020646	2L_14020646_SNP [dm3] 2L_14020646_SNP [dm6]	T	G	4.217e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18049043	3R_18049043_SNP [dm3] 3R_22223321_SNP [dm6]	T	C	4.221e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2586622	3L_2586622_SNP [dm3] 3L_2586622_SNP [dm6]	C	A	4.224e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9907846	2R_9907846_SNP [dm3] 2R_14020341_SNP [dm6]	A	T	4.225e^-4	1	INTRON mam
3L	15244392	3L_15244392_SNP [dm3] 3L_15251292_SNP [dm6]	A	C	4.237e^-4	1	INTERGENIC
3R	19782828	3R_19782828_SNP [dm3] 3R_23957106_SNP [dm6]	T	A	4.257e^-4	1	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
3R	12645121	3R_12645121_SNP [dm3] 3R_16819399_SNP [dm6]	A	G	4.261e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9416407	2R_9416407_SNP [dm3] 2R_13528902_SNP [dm6]	T	A	4.262e^-4	1	INTRON Vmat
X	6682205	X_6682205_DEL [dm3] X_6788172_DEL [dm6]	TGTGTACT	T	4.262e^-4	1	INTRON C3G	TF binding site mE1_TFBS_chinmo
2R	13018960	2R_13018960_SNP [dm3] 2R_17131455_SNP [dm6]	C	T	4.267e^-4	1	EXON CR45273
3L	5970782	3L_5970782_DEL [dm3] 3L_5977682_DEL [dm6]	TT	T	4.273e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11029545	3R_11029545_SNP [dm3] 3R_15203823_SNP [dm6]	T	C	4.276e^-4	1	SYNONYMOUS_CODING Spn88Ea DOWNSTREAM CG42542	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10318475	2R_10318475_SNP [dm3] 2R_14430970_SNP [dm6]	A	G	4.283e^-4	1	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20539726	3L_20539726_SNP [dm3] 3L_20546626_SNP [dm6]	G	T	4.289e^-4	1	INTERGENIC
2L	5826915	2L_5826915_SNP [dm3] 2L_5826915_SNP [dm6]	A	T	4.291e^-4	1	INTRON TrissinR
3L	6737490	3L_6737490_SNP [dm3] 3L_6744390_SNP [dm6]	T	C	4.321e^-4	1	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3L	19197460	3L_19197460_SNP [dm3] 3L_19204360_SNP [dm6]	A	C	4.326e^-4	1	INTRON fz2
3R	14544821	3R_14544821_SNP [dm3] 3R_18719099_SNP [dm6]	G	A	4.344e^-4	1	DOWNSTREAM VAChT INTRON Cha
3R	19414760	3R_19414760_SNP [dm3] 3R_23589038_SNP [dm6]	C	T	4.344e^-4	1	SYNONYMOUS_CODING CG10182
3R	24398479	3R_24398479_SNP [dm3] 3R_28572757_SNP [dm6]	C	T	4.355e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2051577	2L_2051577_SNP [dm3] 2L_2051577_SNP [dm6]	A	T	4.369e^-4	1	INTERGENIC
2R	2435392	2R_2435392_INS [dm3] 2R_6547887_INS [dm6]	AG	TCGGATGC	4.371e^-4	1	INTRON jing
3R	19756304	3R_19756304_SNP [dm3] 3R_23930582_SNP [dm6]	A	G	4.378e^-4	1	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5222423	2R_5222423_SNP [dm3] 2R_9334918_SNP [dm6]	C	T	4.383e^-4	1	INTRON CG13954 & 1 other
2L	14015200	2L_14015200_SNP [dm3] 2L_14015200_SNP [dm6]	G	C	4.389e^-4	1	INTRON bgm
3R	12641407	3R_12641407_SNP [dm3] 3R_16815685_SNP [dm6]	G	T	4.427e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17976516	3R_17976516_SNP [dm3] 3R_22150794_SNP [dm6]	A	G	4.429e^-4	1	INTRON SKIP
3R	996898	3R_996898_SNP [dm3] 3R_5171176_SNP [dm6]	C	T	4.436e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24398550	3R_24398550_SNP [dm3] 3R_28572828_SNP [dm6]	T	C	4.437e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	1049647	2L_1049647_SNP [dm3] 2L_1049647_SNP [dm6]	G	C	4.453e^-4	1	DOWNSTREAM S INTERGENIC
3L	8627615	3L_8627615_SNP [dm3] 3L_8634515_SNP [dm6]	G	A	4.456e^-4	1	UPSTREAM Cdc6 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	643776	X_643776_SNP [dm3] X_749743_SNP [dm6]	A	C	4.459e^-4	1	UTR_3_PRIME CG13362 UPSTREAM CG5254 DOWNSTREAM sdk
2R	15330353	2R_15330353_SNP [dm3] 2R_19442848_SNP [dm6]	C	T	4.478e^-4	1	SYNONYMOUS_CODING RpL11 UPSTREAM snoRNA:Psi28S-2444 DOWNSTREAM Spt5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14020452	2L_14020452_SNP [dm3] 2L_14020452_SNP [dm6]	T	G	4.487e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13516181	3L_13516181_SNP [dm3] 3L_13523081_SNP [dm6]	T	A	4.537e^-4	1	UTR_3_PRIME bru-3
3R	24398594	3R_24398594_INS [dm3] 3R_28572872_INS [dm6]	T	TG	4.544e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9450285	2R_9450285_SNP [dm3] 2R_13562780_SNP [dm6]	T	C	4.545e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	3518873	X_3518873_SNP [dm3] X_3624840_SNP [dm6]	A	T	4.573e^-4	1	INTRON AstA-R1
3R	20170091	3R_20170091_SNP [dm3] 3R_24344369_SNP [dm6]	T	A	4.574e^-4	1	UTR_3_PRIME CG5746 DOWNSTREAM Ms
2L	15570467	2L_15570467_SNP [dm3] 2L_15570467_SNP [dm6]	A	G	4.576e^-4	1	INTRON kek3
2L	14027274	2L_14027274_SNP [dm3] 2L_14027274_SNP [dm6]	A	G	4.589e^-4	1	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11892566	3R_11892566_SNP [dm3] 3R_16066844_SNP [dm6]	A	T	4.596e^-4	1	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8313287	2R_8313287_SNP [dm3] 2R_12425782_SNP [dm6]	T	A	4.596e^-4	1	DOWNSTREAM CG8520 INTRON CG8525	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4855560	2L_4855560_SNP [dm3] 2L_4855560_SNP [dm6]	T	C	4.602e^-4	1	INTRON pog
2R	15681823	2R_15681823_SNP [dm3] 2R_19794318_SNP [dm6]	T	C	4.608e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	2854054	3L_2854054_SNP [dm3] 3L_2854054_SNP [dm6]	A	G	4.610e^-4	1	INTRON CG43444
2R	7446809	2R_7446809_SNP [dm3] 2R_11559304_SNP [dm6]	A	C	4.611e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17674204	2L_17674204_DEL [dm3] 2L_17674204_DEL [dm6]	CA	C	4.614e^-4	1	INTRON CadN
3R	15787453	3R_15787453_SNP [dm3] 3R_19961731_SNP [dm6]	G	C	4.615e^-4	1	INTRON Hs6st
X	4575206	X_4575206_SNP [dm3] X_4681173_SNP [dm6]	G	A	4.616e^-4	1	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9122802	X_9122802_SNP [dm3] X_9228769_SNP [dm6]	C	G	4.618e^-4	1	UTR_3_PRIME Gr8a DOWNSTREAM CG12121
X	14419117	X_14419117_SNP [dm3] X_14525084_SNP [dm6]	A	G	4.625e^-4	1	INTERGENIC
2R	9697890	2R_9697890_SNP [dm3] 2R_13810385_SNP [dm6]	A	C	4.631e^-4	1	INTRON stj	TF binding site mE1_TFBS_cad
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	4.647e^-4	1	INTRON sick
X	5745391	X_5745391_SNP [dm3] X_5851358_SNP [dm6]	G	A	4.649e^-4	1	INTERGENIC
2R	16679737	2R_16679737_SNP [dm3] 2R_20792232_SNP [dm6]	G	A	4.651e^-4	1	UPSTREAM CG15225 & 1 other INTERGENIC
2R	9450174	2R_9450174_SNP [dm3] 2R_13562669_SNP [dm6]	A	T	4.663e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	19881368	2R_19881368_SNP [dm3] 2R_23993845_SNP [dm6]	A	G	4.671e^-4	1	SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
3R	3664280	3R_3664280_SNP [dm3] 3R_7838558_SNP [dm6]	T	C	4.675e^-4	1	INTRON CG34384
2L	1276996	2L_1276996_SNP [dm3] 2L_1276996_SNP [dm6]	A	G	4.681e^-4	1	INTRON robo3
2L	5215584	2L_5215584_SNP [dm3] 2L_5215584_SNP [dm6]	C	A	4.715e^-4	1	SYNONYMOUS_CODING CG14034 UPSTREAM CG7742
3L	5487945	3L_5487945_SNP [dm3] 3L_5494845_SNP [dm6]	G	C	4.717e^-4	1	UPSTREAM CR44520 INTERGENIC
3L	11416257	3L_11416257_SNP [dm3] 3L_11423157_SNP [dm6]	C	T	4.725e^-4	1	INTERGENIC
2L	19252549	2L_19252549_SNP [dm3] 2L_19252549_SNP [dm6]	T	C	4.738e^-4	1	INTERGENIC
3R	3638678	3R_3638678_SNP [dm3] 3R_7812956_SNP [dm6]	G	A	4.744e^-4	1	UTR_3_PRIME CG31473	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	26519305	3R_26519305_SNP [dm3] 3R_30693583_SNP [dm6]	C	G	4.756e^-4	1	UTR_3_PRIME CG12069 DOWNSTREAM Spn100A & 1 other
3R	11818697	3R_11818697_SNP [dm3] 3R_15992975_SNP [dm6]	G	A	4.759e^-4	1	INTRON srp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3577847	2L_3577847_SNP [dm3] 2L_3577847_SNP [dm6]	G	C	4.767e^-4	1	DOWNSTREAM sob INTERGENIC
3L	13818269	3L_13818269_SNP [dm3] 3L_13825169_SNP [dm6]	T	C	4.772e^-4	1	INTERGENIC
3R	15786423	3R_15786423_SNP [dm3] 3R_19960701_SNP [dm6]	C	T	4.773e^-4	1	INTRON Hs6st
3R	24398540	3R_24398540_SNP [dm3] 3R_28572818_SNP [dm6]	T	A	4.781e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13195737	3R_13195737_SNP [dm3] 3R_17370015_SNP [dm6]	A	G	4.786e^-4	1	INTERGENIC
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	4.788e^-4	1	INTRON sick
3R	24459342	3R_24459342_SNP [dm3] 3R_28633620_SNP [dm6]	C	T	4.789e^-4	1	INTRON CG10011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8969138	2L_8969138_SNP [dm3] 2L_8969138_SNP [dm6]	G	A	4.793e^-4	1	SYNONYMOUS_CODING CG18088
2R	9907791	2R_9907791_SNP [dm3] 2R_14020286_SNP [dm6]	C	A	4.800e^-4	1	INTRON mam
3L	11416250	3L_11416250_SNP [dm3] 3L_11423150_SNP [dm6]	T	G	4.805e^-4	1	INTERGENIC
3R	10249699	3R_10249699_SNP [dm3] 3R_14423977_SNP [dm6]	C	A	4.819e^-4	1	INTRON cv-c
2R	9183564	2R_9183564_SNP [dm3] 2R_13296059_SNP [dm6]	G	A	4.824e^-4	1	UPSTREAM Dh31-R INTERGENIC
3R	3694492	3R_3694492_SNP [dm3] 3R_7868770_SNP [dm6]	G	C	4.835e^-4	1	INTRON CG17816
3R	24995211	3R_24995211_SNP [dm3] 3R_29169489_SNP [dm6]	T	C	4.840e^-4	1	SYNONYMOUS_CODING CG11898
2R	9657469	2R_9657469_SNP [dm3] 2R_13769964_SNP [dm6]	C	T	4.850e^-4	1	UTR_5_PRIME Cpr50Ca
3L	11416260	3L_11416260_SNP [dm3] 3L_11423160_SNP [dm6]	C	T	4.852e^-4	1	INTERGENIC
X	11520032	X_11520032_SNP [dm3] X_11625999_SNP [dm6]	A	G	4.861e^-4	1	INTRON Ptp10D
3R	3658095	3R_3658095_SNP [dm3] 3R_7832373_SNP [dm6]	G	A	4.868e^-4	1	INTRON CG34384
3L	2425286	3L_2425286_SNP [dm3] 3L_2425286_SNP [dm6]	G	C	4.884e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_bab1
3R	25997385	3R_25997385_SNP [dm3] 3R_30171663_SNP [dm6]	G	A	4.892e^-4	1	UTR_3_PRIME Mlc2 UPSTREAM CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	22304531	X_22304531_SNP [dm3] X_22902695_SNP [dm6]	G	A	4.905e^-4	1	INTERGENIC	transposable element FlyBase
3L	17490778	3L_17490778_SNP [dm3] 3L_17497678_SNP [dm6]	A	G	4.912e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	11517883	2R_11517883_SNP [dm3] 2R_15630378_SNP [dm6]	T	C	4.921e^-4	1	INTRON CG42524
2L	534317	2L_534317_SNP [dm3] 2L_534317_SNP [dm6]	T	C	4.925e^-4	1	INTRON ush	TF binding site mE1_TFBS_inv
3R	12504797	3R_12504797_SNP [dm3] 3R_16679075_SNP [dm6]	A	G	4.926e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9458694	3R_9458694_SNP [dm3] 3R_13632972_SNP [dm6]	T	C	4.931e^-4	1	SYNONYMOUS_CODING CG10841
3R	17066804	3R_17066804_DEL [dm3] 3R_21241082_DEL [dm6]	ATAAAATGAATGAATGATAA...	A	4.933e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	7225737	2R_7225737_SNP [dm3] 2R_11338232_SNP [dm6]	A	C	4.949e^-4	1	SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14018188	2L_14018188_SNP [dm3] 2L_14018188_SNP [dm6]	A	G	4.964e^-4	1	SYNONYMOUS_CODING bgm	TF binding site mE1_TFBS_cad
2L	6404834	2L_6404834_SNP [dm3] 2L_6404834_SNP [dm6]	G	C	4.972e^-4	1	INTRON CG42368
2L	843315	2L_843315_SNP [dm3] 2L_843315_SNP [dm6]	C	T	4.975e^-4	1	UPSTREAM drongo INTRON drongo
X	10751382	X_10751382_SNP [dm3] X_10857349_SNP [dm6]	C	T	4.988e^-4	1	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16851297	2R_16851297_SNP [dm3] 2R_20963792_SNP [dm6]	C	T	4.994e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22268986	X_22268986_SNP [dm3] X_22867150_SNP [dm6]	T	G	4.998e^-4	1	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3399825	3L_3399825_SNP [dm3] 3L_3399825_SNP [dm6]	C	A	5.001e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4045339	2R_4045339_SNP [dm3] 2R_8157834_SNP [dm6]	G	T	5.001e^-4	1	SPLICE_SITE_REGION CR30374 UPSTREAM tRNA:CR30297 INTRON CR30374 EXON CR44068	TF binding site mE1_TFBS_sens
2R	10085803	2R_10085803_DEL [dm3] 2R_14198298_DEL [dm6]	TGACAATATACGT...	T	5.006e^-4	1	UTR_3_PRIME CG30069 DOWNSTREAM VGAT
2L	1377808	2L_1377808_SNP [dm3] 2L_1377808_SNP [dm6]	T	C	5.009e^-4	1	INTERGENIC
2R	9645936	2R_9645936_SNP [dm3] 2R_13758431_SNP [dm6]	A	G	5.016e^-4	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
3R	11025926	3R_11025926_SNP [dm3] 3R_15200204_SNP [dm6]	C	G	5.019e^-4	1	UPSTREAM CG42542 INTRON CG42542
3R	19781881	3R_19781881_SNP [dm3] 3R_23956159_SNP [dm6]	G	A	5.035e^-4	1	SYNONYMOUS_CODING Aats-glupro UPSTREAM Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1284979	2L_1284979_SNP [dm3] 2L_1284979_SNP [dm6]	T	A	5.052e^-4	1	INTRON robo3
3R	16492911	3R_16492911_SNP [dm3] 3R_20667189_SNP [dm6]	T	G	5.055e^-4	1	INTERGENIC
2L	14011427	2L_14011427_SNP [dm3] 2L_14011427_SNP [dm6]	A	G	5.055e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
2L	4840523	2L_4840523_SNP [dm3] 2L_4840523_SNP [dm6]	T	A	5.065e^-4	1	NON_SYNONYMOUS_CODING CG12194 DOWNSTREAM mxt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5821341	3L_5821341_SNP [dm3] 3L_5828241_SNP [dm6]	T	C	5.084e^-4	1	INTRON vn
2R	4471349	2R_4471349_SNP [dm3] 2R_8583844_SNP [dm6]	C	T	5.085e^-4	1	UTR_5_PRIME CG42326
3L	4176274	3L_4176274_SNP [dm3] 3L_4176274_SNP [dm6]	G	A	5.091e^-4	1	SYNONYMOUS_CODING Teh4 INTRON CG18675
3L	14708614	3L_14708614_SNP [dm3] 3L_14715514_SNP [dm6]	A	T	5.095e^-4	1	INTRON ome
3R	26050648	3R_26050648_SNP [dm3] 3R_30224926_SNP [dm6]	C	T	5.096e^-4	1	INTERGENIC
2R	11642021	2R_11642021_SNP [dm3] 2R_15754516_SNP [dm6]	A	T	5.096e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14334495	2R_14334495_SNP [dm3] 2R_18446990_SNP [dm6]	A	C	5.098e^-4	1	DOWNSTREAM Prp19 INTRON CG5189 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12641405	3R_12641405_SNP [dm3] 3R_16815683_SNP [dm6]	C	A	5.100e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24460971	3R_24460971_SNP [dm3] 3R_28635249_SNP [dm6]	T	G	5.114e^-4	1	UPSTREAM CG10011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11608209	2R_11608209_SNP [dm3] 2R_15720704_SNP [dm6]	T	A	5.130e^-4	1	INTERGENIC
3L	20347268	3L_20347268_SNP [dm3] 3L_20354168_SNP [dm6]	A	T	5.135e^-4	1	UTR_5_PRIME CG5618 DOWNSTREAM eRF1
3R	10362818	3R_10362818_SNP [dm3] 3R_14537096_SNP [dm6]	A	T	5.138e^-4	1	INTRON Pde6
2R	12343509	2R_12343509_SNP [dm3] 2R_16456004_SNP [dm6]	C	T	5.144e^-4	1	INTERGENIC
2R	5591381	2R_5591381_SNP [dm3] 2R_9703876_SNP [dm6]	A	G	5.153e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5338470	2R_5338470_SNP [dm3] 2R_9450965_SNP [dm6]	T	A	5.155e^-4	1	INTRON Camta
2R	8631004	2R_8631004_SNP [dm3] 2R_12743499_SNP [dm6]	G	C	5.168e^-4	1	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9100038	2R_9100038_SNP [dm3] 2R_13212533_SNP [dm6]	G	A	5.171e^-4	1	UTR_3_PRIME AQP UPSTREAM CG30058 & 2 others
2L	14025946	2L_14025946_SNP [dm3] 2L_14025946_SNP [dm6]	T	C	5.173e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14025947	2L_14025947_SNP [dm3] 2L_14025947_SNP [dm6]	T	C	5.173e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10082487	2L_10082487_SNP [dm3] 2L_10082487_SNP [dm6]	A	G	5.174e^-4	1	INTRON CG44153
3L	14334120	3L_14334120_SNP [dm3] 3L_14341020_SNP [dm6]	C	T	5.177e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9753787	3L_9753787_SNP [dm3] 3L_9760687_SNP [dm6]	T	C	5.195e^-4	1	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	13366042	3R_13366042_SNP [dm3] 3R_17540320_SNP [dm6]	T	A	5.199e^-4	1	UPSTREAM SF1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	9541149	2L_9541149_SNP [dm3] 2L_9541149_SNP [dm6]	G	T	5.203e^-4	1	SYNONYMOUS_CODING CG17855
3L	3713988	3L_3713988_SNP [dm3] 3L_3713988_SNP [dm6]	T	C	5.207e^-4	1	UPSTREAM CG43089 DOWNSTREAM CG32264 INTERGENIC	insulator Insulator_Class_II.mE01
2R	8304488	2R_8304488_SNP [dm3] 2R_12416983_SNP [dm6]	T	A	5.209e^-4	1	INTRON CG13157
2R	13270922	2R_13270922_SNP [dm3] 2R_17383417_SNP [dm6]	G	A	5.210e^-4	1	INTERGENIC
3L	3713829	3L_3713829_SNP [dm3] 3L_3713829_SNP [dm6]	C	T	5.227e^-4	1	UPSTREAM CG43089 DOWNSTREAM CG32264 INTERGENIC
3L	14597241	3L_14597241_SNP [dm3] 3L_14604141_SNP [dm6]	T	G	5.230e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2961214	3L_2961214_SNP [dm3] 3L_2961214_SNP [dm6]	G	T	5.244e^-4	1	UPSTREAM Or63a & 1 other INTERGENIC
2L	14020438	2L_14020438_SNP [dm3] 2L_14020438_SNP [dm6]	A	G	5.252e^-4	1	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8536317	3L_8536317_SNP [dm3] 3L_8543217_SNP [dm6]	A	T	5.254e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13926948	2L_13926948_SNP [dm3] 2L_13926948_SNP [dm6]	C	G	5.258e^-4	1	INTRON Ance-3
3R	15782003	3R_15782003_SNP [dm3] 3R_19956281_SNP [dm6]	C	T	5.258e^-4	1	INTRON Hs6st
3R	15787532	3R_15787532_SNP [dm3] 3R_19961810_SNP [dm6]	A	G	5.258e^-4	1	INTRON Hs6st
3R	4134373	3R_4134373_SNP [dm3] 3R_8308651_SNP [dm6]	C	T	5.265e^-4	1	UPSTREAM mir-4918 & 1 other DOWNSTREAM CG11693 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10019057	X_10019057_SNP [dm3] X_10125024_SNP [dm6]	A	G	5.277e^-4	1	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	16768384	X_16768384_SNP [dm3] X_16874351_SNP [dm6]	A	T	5.278e^-4	1	INTRON CG13003
X	7649925	X_7649925_INS [dm3] X_7755892_INS [dm6]	T	TAT	5.292e^-4	1	INTERGENIC
2L	14009843	2L_14009843_SNP [dm3] 2L_14009843_SNP [dm6]	T	C	5.294e^-4	1	DOWNSTREAM tRNA:Q:34E INTERGENIC
3L	7414106	3L_7414106_SNP [dm3] 3L_7421006_SNP [dm6]	A	G	5.324e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	12799898	2R_12799898_SNP [dm3] 2R_16912393_SNP [dm6]	C	T	5.329e^-4	1	INTERGENIC
2L	5051649	2L_5051649_SNP [dm3] 2L_5051649_SNP [dm6]	G	A	5.342e^-4	1	SYNONYMOUS_CODING eIF-3p40 UPSTREAM CG9121
X	20430038	X_20430038_INS [dm3] X_20559011_INS [dm6]	C	CAAGCATGTAGCATGCTCAC...	5.342e^-4	1	INTRON RunxB
2R	9099950	2R_9099950_SNP [dm3] 2R_13212445_SNP [dm6]	G	A	5.353e^-4	1	UTR_3_PRIME AQP UPSTREAM CG30058 & 2 others
3L	8523077	3L_8523077_SNP [dm3] 3L_8529977_SNP [dm6]	T	C	5.372e^-4	1	INTRON foi
3R	22748003	3R_22748003_DEL [dm3] 3R_26922281_DEL [dm6]	TT	T	5.385e^-4	1	INTRON sda
2L	2244388	2L_2244388_SNP [dm3] 2L_2244388_SNP [dm6]	T	G	5.389e^-4	1	UTR_3_PRIME CG4267 UPSTREAM CR42859
2R	18136525	2R_18136525_SNP [dm3] 2R_22249020_SNP [dm6]	G	A	5.402e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	1408459	2L_1408459_SNP [dm3] 2L_1408459_SNP [dm6]	C	T	5.413e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5225969	2R_5225969_SNP [dm3] 2R_9338464_SNP [dm6]	G	C	5.417e^-4	1	INTRON CG13954 & 1 other
2L	1284999	2L_1284999_SNP [dm3] 2L_1284999_SNP [dm6]	T	C	5.421e^-4	1	INTRON robo3
3R	2493311	3R_2493311_SNP [dm3] 3R_6667589_SNP [dm6]	A	C	5.432e^-4	1	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23481912	3R_23481912_SNP [dm3] 3R_27656190_SNP [dm6]	C	T	5.434e^-4	1	DOWNSTREAM Mlc1 INTRON tau
2R	12039264	2R_12039264_SNP [dm3] 2R_16151759_SNP [dm6]	G	A	5.437e^-4	1	INTRON lbk
2L	11502535	2L_11502535_SNP [dm3] 2L_11502535_SNP [dm6]	C	G	5.440e^-4	1	INTRON spz4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16728130	3R_16728130_SNP [dm3] 3R_20902408_SNP [dm6]	A	T	5.446e^-4	1	INTRON CG5621	TF binding site mE1_TFBS_chinmo
2L	19886304	2L_19886304_SNP [dm3] 2L_19886304_SNP [dm6]	A	C	5.460e^-4	1	INTRON sick
2L	2731636	2L_2731636_SNP [dm3] 2L_2731636_SNP [dm6]	G	T	5.461e^-4	1	INTRON CG31689
2L	1114455	2L_1114455_SNP [dm3] 2L_1114455_SNP [dm6]	T	G	5.469e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
2R	18871780	2R_18871780_SNP [dm3] 2R_22984257_SNP [dm6]	A	G	5.472e^-4	1	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833 & 1 other	TF binding site mE1_TFBS_cad
2L	14011430	2L_14011430_SNP [dm3] 2L_14011430_SNP [dm6]	G	A	5.473e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
2R	6463498	2R_6463498_DEL [dm3] 2R_10575993_DEL [dm6]	GG	G	5.474e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5347262	2R_5347262_DEL [dm3] 2R_9459757_DEL [dm6]	TTTCGTTTCT	T	5.474e^-4	1	INTRON Camta	TF binding site mE1_TFBS_inv
2R	16645239	2R_16645239_SNP [dm3] 2R_20757734_SNP [dm6]	C	A	5.486e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8163820	3L_8163820_SNP [dm3] 3L_8170720_SNP [dm6]	T	A	5.501e^-4	1	UTR_3_PRIME RecQ4	TF binding site mE1_TFBS_cnc
2L	12845333	2L_12845333_SNP [dm3] 2L_12845333_SNP [dm6]	C	T	5.503e^-4	1	INTERGENIC
3R	3658643	3R_3658643_SNP [dm3] 3R_7832921_SNP [dm6]	C	A	5.511e^-4	1	INTRON CG34384
2R	14472718	2R_14472718_SNP [dm3] 2R_18585213_SNP [dm6]	G	T	5.520e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
X	18968749	X_18968749_SNP [dm3] X_19074716_SNP [dm6]	G	C	5.523e^-4	1	INTERGENIC
2R	5316973	2R_5316973_SNP [dm3] 2R_9429468_SNP [dm6]	T	G	5.536e^-4	1	INTRON Pdk
2L	3577969	2L_3577969_SNP [dm3] 2L_3577969_SNP [dm6]	A	T	5.539e^-4	1	DOWNSTREAM sob INTERGENIC
3L	7589536	3L_7589536_SNP [dm3] 3L_7596436_SNP [dm6]	C	T	5.547e^-4	1	UPSTREAM CG33275 INTRON CG33275
3R	3636187	3R_3636187_SNP [dm3] 3R_7810465_SNP [dm6]	C	T	5.553e^-4	1	UPSTREAM CG31472 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	3636218	3R_3636218_SNP [dm3] 3R_7810496_SNP [dm6]	C	T	5.553e^-4	1	UPSTREAM CG31472 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	4575091	X_4575091_SNP [dm3] X_4681058_SNP [dm6]	A	G	5.556e^-4	1	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12157051	2L_12157051_SNP [dm3] 2L_12157051_SNP [dm6]	T	A	5.567e^-4	1	INTRON CG31760
3R	13203717	3R_13203717_SNP [dm3] 3R_17377995_SNP [dm6]	A	C	5.585e^-4	1	INTRON Brf	TF binding site mE1_TFBS_Trl
2R	12035065	2R_12035065_SNP [dm3] 2R_16147560_SNP [dm6]	G	A	5.595e^-4	1	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
3R	22573287	3R_22573287_SNP [dm3] 3R_26747565_SNP [dm6]	G	A	5.602e^-4	1	INTERGENIC
3L	1338423	3L_1338423_SNP [dm3] 3L_1338423_SNP [dm6]	G	A	5.604e^-4	1	SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5826917	2L_5826917_SNP [dm3] 2L_5826917_SNP [dm6]	C	T	5.607e^-4	1	INTRON TrissinR
2L	6320128	2L_6320128_SNP [dm3] 2L_6320128_SNP [dm6]	C	T	5.612e^-4	1	INTRON Ddr
2L	3871261	2L_3871261_SNP [dm3] 2L_3871261_SNP [dm6]	T	G	5.621e^-4	1	UTR_3_PRIME Cep97 DOWNSTREAM CG31957	TF binding site mE1_TFBS_sens
2L	1518788	2L_1518788_SNP [dm3] 2L_1518788_SNP [dm6]	G	A	5.641e^-4	1	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9651132	2R_9651132_SNP [dm3] 2R_13763627_SNP [dm6]	C	T	5.643e^-4	1	INTERGENIC
2L	14011315	2L_14011315_SNP [dm3] 2L_14011315_SNP [dm6]	A	T	5.644e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
2R	11341393	2R_11341393_SNP [dm3] 2R_15453888_SNP [dm6]	T	C	5.656e^-4	1	INTRON CG43729
2L	6537121	2L_6537121_SNP [dm3] 2L_6537121_SNP [dm6]	A	C	5.660e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11503822	2L_11503822_SNP [dm3] 2L_11503822_SNP [dm6]	G	A	5.703e^-4	1	INTRON spz4
2R	13685029	2R_13685029_SNP [dm3] 2R_17797524_SNP [dm6]	T	C	5.712e^-4	1	SYNONYMOUS_CODING Dhit
3R	3662716	3R_3662716_SNP [dm3] 3R_7836994_SNP [dm6]	G	A	5.713e^-4	1	INTRON CG34384
2L	9536701	2L_9536701_SNP [dm3] 2L_9536701_SNP [dm6]	C	T	5.715e^-4	1	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
3R	25997395	3R_25997395_SNP [dm3] 3R_30171673_SNP [dm6]	G	C	5.724e^-4	1	UTR_3_PRIME Mlc2 UPSTREAM CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15787465	3R_15787465_SNP [dm3] 3R_19961743_SNP [dm6]	T	A	5.734e^-4	1	INTRON Hs6st
3L	16008986	3L_16008986_DEL [dm3] 3L_16015886_DEL [dm6]	AATTGTGTACTTGAATATGT...	G	5.743e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	10825601	X_10825601_SNP [dm3] X_10931568_SNP [dm6]	T	G	5.747e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10495965	3R_10495965_SNP [dm3] 3R_14670243_SNP [dm6]	C	T	5.751e^-4	1	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21884252	3R_21884252_SNP [dm3] 3R_26058530_SNP [dm6]	C	T	5.755e^-4	1	SYNONYMOUS_CODING RpL34a UPSTREAM CG14550 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	8304496	2R_8304496_SNP [dm3] 2R_12416991_SNP [dm6]	A	T	5.757e^-4	1	INTRON CG13157
2R	5366712	2R_5366712_SNP [dm3] 2R_9479207_SNP [dm6]	G	A	5.760e^-4	1	UTR_3_PRIME Camta
2R	5378297	2R_5378297_SNP [dm3] 2R_9490792_SNP [dm6]	T	C	5.760e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15702306	2R_15702306_SNP [dm3] 2R_19814801_SNP [dm6]	G	C	5.765e^-4	1	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
2L	1286229	2L_1286229_SNP [dm3] 2L_1286229_SNP [dm6]	C	T	5.783e^-4	1	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	9100039	2R_9100039_SNP [dm3] 2R_13212534_SNP [dm6]	G	T	5.802e^-4	1	UTR_3_PRIME AQP UPSTREAM CG30058 & 2 others
2L	12629904	2L_12629904_SNP [dm3] 2L_12629904_SNP [dm6]	T	A	5.817e^-4	1	INTRON Ref2
X	4664589	X_4664589_INS [dm3] X_4770556_INS [dm6]	T	ATC	5.824e^-4	1	UPSTREAM CG15472 DOWNSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4016718	2R_4016718_SNP [dm3] 2R_8129213_SNP [dm6]	A	T	5.832e^-4	1	UTR_3_PRIME Socs44A DOWNSTREAM Pbp49 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12035338	2R_12035338_SNP [dm3] 2R_16147833_SNP [dm6]	A	G	5.839e^-4	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12035347	2R_12035347_SNP [dm3] 2R_16147842_SNP [dm6]	C	T	5.839e^-4	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3673343	3R_3673343_SNP [dm3] 3R_7847621_SNP [dm6]	C	G	5.840e^-4	1	NON_SYNONYMOUS_CODING CG34384
3L	12132534	3L_12132534_SNP [dm3] 3L_12139434_SNP [dm6]	C	T	5.856e^-4	1	UPSTREAM l_3_neo18 INTRON RhoGAP68F
2L	14015251	2L_14015251_SNP [dm3] 2L_14015251_SNP [dm6]	C	T	5.863e^-4	1	INTRON bgm
3L	4032360	3L_4032360_SNP [dm3] 3L_4032360_SNP [dm6]	G	C	5.865e^-4	1	SYNONYMOUS_CODING Gr64d UTR_5_PRIME Gr64e DOWNSTREAM Gr64b & 1 other
3L	2586610	3L_2586610_SNP [dm3] 3L_2586610_SNP [dm6]	C	T	5.882e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5427258	3L_5427258_SNP [dm3] 3L_5434158_SNP [dm6]	A	G	5.889e^-4	1	INTRON CG34391
3R	26312458	3R_26312458_SNP [dm3] 3R_30486736_SNP [dm6]	A	T	5.890e^-4	1	DOWNSTREAM PH4alphaEFB & 1 other INTERGENIC
3L	12942433	3L_12942433_SNP [dm3] 3L_12949333_SNP [dm6]	C	T	5.892e^-4	1	INTERGENIC
3L	5059554	3L_5059554_SNP [dm3] 3L_5059554_SNP [dm6]	A	T	5.893e^-4	1	INTRON Con
2L	3833446	2L_3833446_SNP [dm3] 2L_3833446_SNP [dm6]	G	A	5.899e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	8313373	2R_8313373_SNP [dm3] 2R_12425868_SNP [dm6]	T	C	5.906e^-4	1	SYNONYMOUS_CODING CG8525 DOWNSTREAM CG8520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	8420810	X_8420810_SNP [dm3] X_8526777_SNP [dm6]	C	A	5.913e^-4	1	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3698948	3R_3698948_SNP [dm3] 3R_7873226_SNP [dm6]	C	T	5.920e^-4	1	INTRON CG17816
3R	19782697	3R_19782697_SNP [dm3] 3R_23956975_SNP [dm6]	T	C	5.920e^-4	1	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2R	10894405	2R_10894405_SNP [dm3] 2R_15006900_SNP [dm6]	T	C	5.938e^-4	1	INTERGENIC
3R	10254370	3R_10254370_SNP [dm3] 3R_14428648_SNP [dm6]	C	T	5.939e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
X	3520272	X_3520272_SNP [dm3] X_3626239_SNP [dm6]	G	A	5.941e^-4	1	INTRON AstA-R1
2L	5989273	2L_5989273_SNP [dm3] 2L_5989273_SNP [dm6]	G	A	5.947e^-4	1	DOWNSTREAM lid & 1 other INTERGENIC
2L	11504089	2L_11504089_SNP [dm3] 2L_11504089_SNP [dm6]	C	T	5.958e^-4	1	INTRON spz4
2L	5210125	2L_5210125_SNP [dm3] 2L_5210125_SNP [dm6]	C	T	5.959e^-4	1	UPSTREAM Cyp28d1 DOWNSTREAM Cyp28d2 INTERGENIC
2L	5219412	2L_5219412_SNP [dm3] 2L_5219412_SNP [dm6]	A	C	5.967e^-4	1	UTR_3_PRIME tkv DOWNSTREAM TpnC25D
2L	11500395	2L_11500395_SNP [dm3] 2L_11500395_SNP [dm6]	T	G	5.969e^-4	1	INTERGENIC
X	8835136	X_8835136_SNP [dm3] X_8941103_SNP [dm6]	G	A	5.975e^-4	1	INTRON rdgA
X	15166740	X_15166740_SNP [dm3] X_15272707_SNP [dm6]	T	G	5.980e^-4	1	UPSTREAM CG9106 INTERGENIC
3R	24398616	3R_24398616_SNP [dm3] 3R_28572894_SNP [dm6]	T	A	5.991e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	3488197	X_3488197_SNP [dm3] X_3594164_SNP [dm6]	C	G	6.022e^-4	1	INTRON AstA-R1
2R	9645132	2R_9645132_SNP [dm3] 2R_13757627_SNP [dm6]	G	A	6.031e^-4	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2L	1286269	2L_1286269_SNP [dm3] 2L_1286269_SNP [dm6]	C	T	6.042e^-4	1	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	19729321	3R_19729321_SNP [dm3] 3R_23903599_SNP [dm6]	A	C	6.059e^-4	1	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5317077	2R_5317077_DEL [dm3] 2R_9429572_DEL [dm6]	AA	A	6.060e^-4	1	INTRON Pdk
3R	11040822	3R_11040822_SNP [dm3] 3R_15215100_SNP [dm6]	T	A	6.061e^-4	1	DOWNSTREAM CG4210 INTRON SIDL
X	6711447	X_6711447_SNP [dm3] X_6817414_SNP [dm6]	T	C	6.073e^-4	1	SYNONYMOUS_CODING iav DOWNSTREAM Nf-YC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8218019	3L_8218019_SNP [dm3] 3L_8224919_SNP [dm6]	G	C	6.074e^-4	1	INTERGENIC
2R	4167330	2R_4167330_SNP [dm3] 2R_8279825_SNP [dm6]	A	T	6.076e^-4	1	INTERGENIC
3R	5318831	3R_5318831_SNP [dm3] 3R_9493109_SNP [dm6]	C	T	6.082e^-4	1	INTRON CG16779	TF binding site BDTNP1_TFBS_twi
3R	3715761	3R_3715761_SNP [dm3] 3R_7890039_SNP [dm6]	T	A	6.084e^-4	1	UTR_3_PRIME CG10092 DOWNSTREAM CG10092 INTRON mRpS9	TF binding site mE1_TFBS_cad
X	5724088	X_5724088_SNP [dm3] X_5830055_SNP [dm6]	T	C	6.087e^-4	1	INTRON CG15765
X	4637334	X_4637334_DEL [dm3] X_4743301_DEL [dm6]	CC	A	6.095e^-4	1	INTERGENIC
2L	14512406	2L_14512406_SNP [dm3] 2L_14512406_SNP [dm6]	G	C	6.099e^-4	1	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	3224582	2L_3224582_SNP [dm3] 2L_3224582_SNP [dm6]	G	A	6.100e^-4	1	INTERGENIC
2R	11999080	2R_11999080_SNP [dm3] 2R_16111575_SNP [dm6]	C	T	6.100e^-4	1	INTRON Asph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3729481	3R_3729481_SNP [dm3] 3R_7903759_SNP [dm6]	T	C	6.106e^-4	1	SYNONYMOUS_CODING CG2943	TF binding site mE1_TFBS_cad
2R	10220863	2R_10220863_SNP [dm3] 2R_14333358_SNP [dm6]	T	C	6.108e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	3659434	3R_3659434_SNP [dm3] 3R_7833712_SNP [dm6]	T	C	6.113e^-4	1	INTRON CG34384
3L	413603	3L_413603_SNP [dm3] 3L_413603_SNP [dm6]	C	T	6.116e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	14010829	2L_14010829_SNP [dm3] 2L_14010829_SNP [dm6]	T	C	6.118e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
3R	24214512	3R_24214512_SNP [dm3] 3R_28388790_SNP [dm6]	C	T	6.119e^-4	1	INTERGENIC
2L	14535534	2L_14535534_SNP [dm3] 2L_14535534_SNP [dm6]	G	A	6.121e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14517334	X_14517334_SNP [dm3] X_14623301_SNP [dm6]	T	C	6.136e^-4	1	INTRON NetA
2R	14186000	2R_14186000_SNP [dm3] 2R_18298495_SNP [dm6]	A	T	6.137e^-4	1	UPSTREAM CG18540 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	14088066	3L_14088066_SNP [dm3] 3L_14094966_SNP [dm6]	G	A	6.148e^-4	1	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24398471	3R_24398471_SNP [dm3] 3R_28572749_SNP [dm6]	A	G	6.169e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24398515	3R_24398515_SNP [dm3] 3R_28572793_SNP [dm6]	A	G	6.169e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17674450	2L_17674450_SNP [dm3] 2L_17674450_SNP [dm6]	G	A	6.170e^-4	1	INTRON CadN
2L	13925927	2L_13925927_SNP [dm3] 2L_13925927_SNP [dm6]	C	A	6.173e^-4	1	INTRON Ance-3
X	11220535	X_11220535_SNP [dm3] X_11326502_SNP [dm6]	A	G	6.193e^-4	1	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
3R	20914909	3R_20914909_SNP [dm3] 3R_25089187_SNP [dm6]	T	C	6.199e^-4	1	INTERGENIC
2R	13004286	2R_13004286_SNP [dm3] 2R_17116781_SNP [dm6]	A	C	6.209e^-4	1	INTERGENIC
3L	8538550	3L_8538550_SNP [dm3] 3L_8545450_SNP [dm6]	C	T	6.210e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6782321	3R_6782321_SNP [dm3] 3R_10956599_SNP [dm6]	C	G	6.228e^-4	1	INTERGENIC
X	18679316	X_18679316_SNP [dm3] X_18785283_SNP [dm6]	C	G	6.229e^-4	1	UPSTREAM CR6900 DOWNSTREAM CG6961 INTERGENIC	transposable element FlyBase
2R	17252962	2R_17252962_SNP [dm3] 2R_21365457_SNP [dm6]	A	G	6.239e^-4	1	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14734825	3L_14734825_SNP [dm3] 3L_14741725_SNP [dm6]	T	C	6.258e^-4	1	INTRON ome
2R	19156587	2R_19156587_SNP [dm3] 2R_23269064_SNP [dm6]	T	A	6.261e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10204449	3L_10204449_SNP [dm3] 3L_10211349_SNP [dm6]	C	G	6.261e^-4	1	INTERGENIC
3R	17978331	3R_17978331_SNP [dm3] 3R_22152609_SNP [dm6]	C	A	6.267e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	6405407	2R_6405407_SNP [dm3] 2R_10517902_SNP [dm6]	G	A	6.270e^-4	1	DOWNSTREAM lola INTRON lola
3R	24358737	3R_24358737_SNP [dm3] 3R_28533015_SNP [dm6]	T	G	6.280e^-4	1	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4659863	3L_4659863_SNP [dm3] 3L_4659863_SNP [dm6]	G	A	6.281e^-4	1	SYNONYMOUS_CODING axo
2R	20224453	2R_20224453_SNP [dm3] 2R_24336930_SNP [dm6]	C	T	6.285e^-4	1	UPSTREAM CR44282 INTERGENIC
3R	19757290	3R_19757290_SNP [dm3] 3R_23931568_SNP [dm6]	C	A	6.291e^-4	1	UPSTREAM CG13599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14334516	2R_14334516_SNP [dm3] 2R_18447011_SNP [dm6]	T	G	6.296e^-4	1	SPLICE_SITE_REGION CG5189 & 1 other DOWNSTREAM Prp19 INTRON CG5189 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14010820	2L_14010820_SNP [dm3] 2L_14010820_SNP [dm6]	A	T	6.297e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
2L	8578238	2L_8578238_SNP [dm3] 2L_8578238_SNP [dm6]	A	G	6.297e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10347193	2R_10347193_SNP [dm3] 2R_14459688_SNP [dm6]	T	C	6.299e^-4	1	INTRON Oaz
2L	9417370	2L_9417370_DEL [dm3] 2L_9417370_DEL [dm6]	AA	A	6.305e^-4	1	INTRON Mco1
3R	19781464	3R_19781464_SNP [dm3] 3R_23955742_SNP [dm6]	T	A	6.315e^-4	1	SYNONYMOUS_CODING Aats-glupro UPSTREAM Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	4448687	2R_4448687_SNP [dm3] 2R_8561182_SNP [dm6]	G	C	6.328e^-4	1	INTERGENIC
X	5993109	X_5993109_SNP [dm3] X_6099076_SNP [dm6]	G	A	6.332e^-4	1	INTRON Nep1
X	10023038	X_10023038_SNP [dm3] X_10129005_SNP [dm6]	A	C	6.341e^-4	1	INTRON CR44894 & 1 other
2L	3578778	2L_3578778_SNP [dm3] 2L_3578778_SNP [dm6]	T	C	6.342e^-4	1	INTRON sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	16949522	3L_16949522_SNP [dm3] 3L_16956422_SNP [dm6]	C	A	6.345e^-4	1	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	3038788	3L_3038788_SNP [dm3] 3L_3038788_SNP [dm6]	C	T	6.372e^-4	1	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4448575	2R_4448575_SNP [dm3] 2R_8561070_SNP [dm6]	C	T	6.375e^-4	1	INTERGENIC
2L	4840576	2L_4840576_SNP [dm3] 2L_4840576_SNP [dm6]	A	T	6.385e^-4	1	SYNONYMOUS_CODING CG12194 DOWNSTREAM mxt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22282778	X_22282778_SNP [dm3] X_22880942_SNP [dm6]	A	G	6.390e^-4	1	INTRON CG42346	TF binding site mE1_TFBS_chinmo
3R	13360545	3R_13360545_SNP [dm3] 3R_17534823_SNP [dm6]	A	T	6.392e^-4	1	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	14334121	2R_14334121_DEL [dm3] 2R_18446616_DEL [dm6]	TC	T	6.400e^-4	1	UTR_5_PRIME CG5189 & 1 other DOWNSTREAM Prp19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11633760	2R_11633760_SNP [dm3] 2R_15746255_SNP [dm6]	G	A	6.410e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16950774	X_16950774_SNP [dm3] X_17056741_SNP [dm6]	G	T	6.411e^-4	1	INTRON CG45002
X	18615608	X_18615608_DEL [dm3] X_18721575_DEL [dm6]	CCC	C	6.422e^-4	1	INTRON CCKLR-17D1
3L	7436207	3L_7436207_SNP [dm3] 3L_7443107_SNP [dm6]	T	C	6.458e^-4	1	INTRON CG42458	TF binding site mE1_TFBS_HSA
3L	18671295	3L_18671295_SNP [dm3] 3L_18678195_SNP [dm6]	C	T	6.460e^-4	1	DOWNSTREAM GNBP1 INTERGENIC
3L	8163910	3L_8163910_SNP [dm3] 3L_8170810_SNP [dm6]	A	G	6.464e^-4	1	UTR_3_PRIME RecQ4
3L	18139857	3L_18139857_SNP [dm3] 3L_18146757_SNP [dm6]	G	A	6.471e^-4	1	INTERGENIC
2L	14011761	2L_14011761_DEL [dm3] 2L_14011761_DEL [dm6]	GCTTGCAAAG	G	6.476e^-4	1	INTERGENIC
2L	20680359	2L_20680359_SNP [dm3] 2L_20680359_SNP [dm6]	G	A	6.477e^-4	1	SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12707872	3R_12707872_SNP [dm3] 3R_16882150_SNP [dm6]	A	G	6.478e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14019951	2L_14019951_SNP [dm3] 2L_14019951_SNP [dm6]	T	C	6.480e^-4	1	SYNONYMOUS_CODING NimC3 DOWNSTREAM bgm EXON CR44849	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17978949	2L_17978949_SNP [dm3] 2L_17978949_SNP [dm6]	C	G	6.486e^-4	1	NON_SYNONYMOUS_CODING btv
2L	17978527	2L_17978527_SNP [dm3] 2L_17978527_SNP [dm6]	C	T	6.513e^-4	1	NON_SYNONYMOUS_CODING btv
2R	5187924	2R_5187924_DEL [dm3] 2R_9300419_DEL [dm6]	TT	T	6.526e^-4	1	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
2R	4335733	2R_4335733_SNP [dm3] 2R_8448228_SNP [dm6]	C	T	6.558e^-4	1	SYNONYMOUS_CODING Cyp4e1
2R	6405399	2R_6405399_SNP [dm3] 2R_10517894_SNP [dm6]	T	G	6.562e^-4	1	DOWNSTREAM lola INTRON lola
3R	2522696	3R_2522696_SNP [dm3] 3R_6696974_SNP [dm6]	A	G	6.586e^-4	1	UPSTREAM Ccp84Ac INTERGENIC	TF binding site mE1_TFBS_cad
2L	1961724	2L_1961724_SNP [dm3] 2L_1961724_SNP [dm6]	A	T	6.601e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14734802	3L_14734802_SNP [dm3] 3L_14741702_SNP [dm6]	A	G	6.606e^-4	1	INTRON ome
3L	16736394	3L_16736394_SNP [dm3] 3L_16743294_SNP [dm6]	T	G	6.609e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6474139	2L_6474139_SNP [dm3] 2L_6474139_SNP [dm6]	T	G	6.617e^-4	1	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3224579	2L_3224579_SNP [dm3] 2L_3224579_SNP [dm6]	A	G	6.631e^-4	1	INTERGENIC
2L	17818170	2L_17818170_SNP [dm3] 2L_17818170_SNP [dm6]	A	G	6.638e^-4	1	INTRON CadN2
2L	10680761	2L_10680761_SNP [dm3] 2L_10680761_SNP [dm6]	C	A	6.642e^-4	1	UPSTREAM CG17105 & 1 other INTERGENIC
2L	2630600	2L_2630600_SNP [dm3] 2L_2630600_SNP [dm6]	T	A	6.650e^-4	1	INTERGENIC
2L	13758027	2L_13758027_SNP [dm3] 2L_13758027_SNP [dm6]	G	A	6.658e^-4	1	INTRON TM9SF4
X	17653740	X_17653740_SNP [dm3] X_17759707_SNP [dm6]	G	T	6.662e^-4	1	INTERGENIC
2R	14334488	2R_14334488_SNP [dm3] 2R_18446983_SNP [dm6]	G	C	6.664e^-4	1	DOWNSTREAM Prp19 INTRON CG5189 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1276501	2L_1276501_SNP [dm3] 2L_1276501_SNP [dm6]	T	A	6.666e^-4	1	INTRON robo3
3L	15621406	3L_15621406_SNP [dm3] 3L_15628306_SNP [dm6]	A	T	6.669e^-4	1	INTRON comm3
X	16298291	X_16298291_SNP [dm3] X_16404258_SNP [dm6]	A	T	6.688e^-4	1	UPSTREAM CG9981 INTRON CG9981
2L	5776772	2L_5776772_DEL [dm3] 2L_5776772_DEL [dm6]	GTTTAACACGAA...	G	6.691e^-4	1	INTRON CG9171
2L	1518379	2L_1518379_SNP [dm3] 2L_1518379_SNP [dm6]	T	C	6.695e^-4	1	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15787600	3R_15787600_SNP [dm3] 3R_19961878_SNP [dm6]	T	A	6.699e^-4	1	INTRON Hs6st
3R	3723117	3R_3723117_SNP [dm3] 3R_7897395_SNP [dm6]	T	C	6.700e^-4	1	INTRON mRpS9 & 1 other
X	12885637	X_12885637_SNP [dm3] X_12991604_SNP [dm6]	G	T	6.703e^-4	1	INTRON rad
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	6.710e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4039155	3L_4039155_SNP [dm3] 3L_4039155_SNP [dm6]	T	C	6.717e^-4	1	SYNONYMOUS_CODING CG11593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16801408	X_16801408_SNP [dm3] X_16907375_SNP [dm6]	T	A	6.718e^-4	1	INTRON CR44754
3L	1571352	3L_1571352_SNP [dm3] 3L_1571352_SNP [dm6]	C	G	6.721e^-4	1	UPSTREAM CG12004 INTRON CG12004
2L	8577903	2L_8577903_SNP [dm3] 2L_8577903_SNP [dm6]	A	G	6.728e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14010840	2L_14010840_SNP [dm3] 2L_14010840_SNP [dm6]	C	T	6.728e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
2L	19889002	2L_19889002_SNP [dm3] 2L_19889002_SNP [dm6]	G	A	6.740e^-4	1	INTRON sick
3L	18858956	3L_18858956_INS [dm3] 3L_18865856_INS [dm6]	G	GCTGTTCA	6.741e^-4	1	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1254049	2L_1254049_SNP [dm3] 2L_1254049_SNP [dm6]	T	A	6.742e^-4	1	INTERGENIC
2R	16715569	2R_16715569_SNP [dm3] 2R_20828064_SNP [dm6]	C	T	6.745e^-4	1	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad
2R	9091004	2R_9091004_SNP [dm3] 2R_13203499_SNP [dm6]	G	A	6.748e^-4	1	NON_SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
2L	14010823	2L_14010823_DEL [dm3] 2L_14010823_DEL [dm6]	TAC	T	6.749e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
X	16298219	X_16298219_SNP [dm3] X_16404186_SNP [dm6]	T	G	6.750e^-4	1	UPSTREAM CG9981 INTRON CG9981
2L	17990404	2L_17990404_SNP [dm3] 2L_17990404_SNP [dm6]	A	G	6.754e^-4	1	UPSTREAM Prosbeta5R2 INTERGENIC
3R	24582723	3R_24582723_SNP [dm3] 3R_28757001_SNP [dm6]	T	C	6.754e^-4	1	UTR_3_PRIME aqrs UPSTREAM CG9997	TF binding site BDTNP1_TFBS_bcd
3R	15707977	3R_15707977_SNP [dm3] 3R_19882255_SNP [dm6]	A	G	6.763e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2R	14472716	2R_14472716_SNP [dm3] 2R_18585211_SNP [dm6]	C	A	6.813e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	9806729	2R_9806729_SNP [dm3] 2R_13919224_SNP [dm6]	A	G	6.827e^-4	1	INTRON shot	TF binding site mE1_TFBS_Trl
2L	6493039	2L_6493039_SNP [dm3] 2L_6493039_SNP [dm6]	T	G	6.827e^-4	1	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6493040	2L_6493040_SNP [dm3] 2L_6493040_SNP [dm6]	A	G	6.827e^-4	1	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3043798	3L_3043798_SNP [dm3] 3L_3043798_SNP [dm6]	C	T	6.830e^-4	1	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6230391	2L_6230391_SNP [dm3] 2L_6230391_SNP [dm6]	G	C	6.837e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24461026	3R_24461026_SNP [dm3] 3R_28635304_SNP [dm6]	G	T	6.844e^-4	1	UPSTREAM CG10011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2436078	3L_2436078_SNP [dm3] 3L_2436078_SNP [dm6]	G	A	6.867e^-4	1	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18080887	3L_18080887_SNP [dm3] 3L_18087787_SNP [dm6]	T	G	6.894e^-4	1	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC	transposable element FlyBase
3L	4036166	3L_4036166_SNP [dm3] 3L_4036166_SNP [dm6]	A	T	6.903e^-4	1	SYNONYMOUS_CODING Gr64f DOWNSTREAM Gr64d & 1 other	TF binding site BDTNP1_TFBS_da
2R	15702221	2R_15702221_SNP [dm3] 2R_19814716_SNP [dm6]	T	A	6.906e^-4	1	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
X	12702780	X_12702780_SNP [dm3] X_12808747_SNP [dm6]	A	C	6.917e^-4	1	INTRON Pde9
2L	3598033	2L_3598033_INS [dm3] 2L_3598033_INS [dm6]	T	TCG	6.919e^-4	1	INTERGENIC
2L	3598040	2L_3598040_SNP [dm3] 2L_3598040_SNP [dm6]	G	A	6.919e^-4	1	INTERGENIC
2L	3598043	2L_3598043_SNP [dm3] 2L_3598043_SNP [dm6]	T	A	6.919e^-4	1	INTERGENIC
2R	3889351	2R_3889351_SNP [dm3] 2R_8001846_SNP [dm6]	G	A	6.922e^-4	1	INTRON CG11191	TF binding site mE1_TFBS_chinmo
2L	20383574	2L_20383574_INS [dm3] 2L_20383574_INS [dm6]	T	TGGA	6.933e^-4	1	INTERGENIC
2L	17800654	2L_17800654_SNP [dm3] 2L_17800654_SNP [dm6]	A	T	6.940e^-4	1	INTRON CadN2
3R	19700947	3R_19700947_SNP [dm3] 3R_23875225_SNP [dm6]	G	A	6.942e^-4	1	INTRON Pli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14031745	2L_14031745_SNP [dm3] 2L_14031745_SNP [dm6]	A	T	6.943e^-4	1	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2L	11491387	2L_11491387_SNP [dm3] 2L_11491387_SNP [dm6]	G	A	6.946e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20524371	3L_20524371_DEL [dm3] 3L_20531271_DEL [dm6]	GAAG	G	6.948e^-4	1	INTRON Rcd2
2R	7777710	2R_7777710_SNP [dm3] 2R_11890205_SNP [dm6]	A	G	6.962e^-4	1	UPSTREAM Ef1alpha48D INTRON ERp60	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2237105	3R_2237105_SNP [dm3] 3R_6411383_SNP [dm6]	T	C	6.964e^-4	1	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	507360	2L_507360_SNP [dm3] 2L_507360_SNP [dm6]	A	C	6.973e^-4	1	INTRON ush
3R	13360380	3R_13360380_SNP [dm3] 3R_17534658_SNP [dm6]	C	A	6.978e^-4	1	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	25184642	3R_25184642_INS [dm3] 3R_29358920_INS [dm6]	A	AC	6.981e^-4	1	INTERGENIC
3L	18081341	3L_18081341_SNP [dm3] 3L_18088241_SNP [dm6]	A	G	7.004e^-4	1	UPSTREAM CG34253 DOWNSTREAM CG13698 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	11642043	2R_11642043_SNP [dm3] 2R_15754538_SNP [dm6]	T	C	7.012e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12982300	2L_12982300_SNP [dm3] 2L_12982300_SNP [dm6]	A	T	7.013e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18081287	3L_18081287_SNP [dm3] 3L_18088187_SNP [dm6]	G	T	7.015e^-4	1	UPSTREAM CG34253 DOWNSTREAM CG13698 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	3598046	2L_3598046_SNP [dm3] 2L_3598046_SNP [dm6]	T	C	7.018e^-4	1	INTERGENIC
2L	3598051	2L_3598051_SNP [dm3] 2L_3598051_SNP [dm6]	C	G	7.018e^-4	1	INTERGENIC
3L	1418331	3L_1418331_SNP [dm3] 3L_1418331_SNP [dm6]	T	A	7.034e^-4	1	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15696322	2R_15696322_SNP [dm3] 2R_19808817_SNP [dm6]	C	G	7.035e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13595462	X_13595462_SNP [dm3] X_13701429_SNP [dm6]	T	G	7.047e^-4	1	INTRON NnaD & 1 other
2R	9646715	2R_9646715_SNP [dm3] 2R_13759210_SNP [dm6]	C	T	7.050e^-4	1	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6968479	2L_6968479_SNP [dm3] 2L_6968479_SNP [dm6]	T	C	7.064e^-4	1	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	23318513	3R_23318513_SNP [dm3] 3R_27492791_SNP [dm6]	T	G	7.074e^-4	1	INTERGENIC
2L	5798282	2L_5798282_SNP [dm3] 2L_5798282_SNP [dm6]	A	C	7.074e^-4	1	INTRON CG9171
3L	18080922	3L_18080922_SNP [dm3] 3L_18087822_SNP [dm6]	A	G	7.083e^-4	1	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC	transposable element FlyBase
3L	4996420	3L_4996420_SNP [dm3] 3L_4996420_SNP [dm6]	T	C	7.085e^-4	1	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_inv
3R	25221154	3R_25221154_SNP [dm3] 3R_29395432_SNP [dm6]	G	A	7.089e^-4	1	INTRON Ptp99A
X	5504120	X_5504120_SNP [dm3] X_5610087_SNP [dm6]	C	T	7.090e^-4	1	INTRON Vsx1
2L	1009376	2L_1009376_SNP [dm3] 2L_1009376_SNP [dm6]	T	G	7.091e^-4	1	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16201797	X_16201797_SNP [dm3] X_16307764_SNP [dm6]	T	C	7.091e^-4	1	DOWNSTREAM CG3679 INTRON CG9914 & 1 other	TF binding site mE1_TFBS_cad
2L	11497245	2L_11497245_SNP [dm3] 2L_11497245_SNP [dm6]	G	A	7.092e^-4	1	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
3R	15787351	3R_15787351_SNP [dm3] 3R_19961629_SNP [dm6]	T	G	7.107e^-4	1	INTRON Hs6st
2R	21028700	2R_21028700_DEL [dm3] 2R_25141177_DEL [dm6]	GGTGGG	G	7.118e^-4	1	INTERGENIC
2L	1666835	2L_1666835_SNP [dm3] 2L_1666835_SNP [dm6]	A	C	7.120e^-4	1	INTRON chinmo
X	9115952	X_9115952_SNP [dm3] X_9221919_SNP [dm6]	T	G	7.124e^-4	1	INTRON t
X	3488537	X_3488537_SNP [dm3] X_3594504_SNP [dm6]	C	T	7.141e^-4	1	INTRON AstA-R1
3L	12781042	3L_12781042_SNP [dm3] 3L_12787942_SNP [dm6]	C	G	7.160e^-4	1	SYNONYMOUS_CODING Atg1
2L	4890187	2L_4890187_SNP [dm3] 2L_4890187_SNP [dm6]	C	A	7.161e^-4	1	NON_SYNONYMOUS_CODING CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6756384	3L_6756384_SNP [dm3] 3L_6763284_SNP [dm6]	C	T	7.166e^-4	1	UPSTREAM CG32392 INTERGENIC
2L	20997184	2L_20997184_SNP [dm3] 2L_20997184_SNP [dm6]	A	G	7.172e^-4	1	INTRON CG42238
3R	25349752	3R_25349752_SNP [dm3] 3R_29524030_SNP [dm6]	A	G	7.176e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17682291	2L_17682291_SNP [dm3] 2L_17682291_SNP [dm6]	G	T	7.179e^-4	1	INTRON CadN
2L	4861690	2L_4861690_SNP [dm3] 2L_4861690_SNP [dm6]	C	T	7.180e^-4	1	INTRON pog
3L	3221168	3L_3221168_SNP [dm3] 3L_3221168_SNP [dm6]	C	T	7.181e^-4	1	UTR_3_PRIME RpL28 DOWNSTREAM snoRNA:Or-CD12 & 3 others
2L	17672856	2L_17672856_SNP [dm3] 2L_17672856_SNP [dm6]	G	A	7.181e^-4	1	INTRON CadN
2L	17672872	2L_17672872_SNP [dm3] 2L_17672872_SNP [dm6]	A	G	7.181e^-4	1	INTRON CadN
3R	23605720	3R_23605720_SNP [dm3] 3R_27779998_SNP [dm6]	C	T	7.197e^-4	1	INTRON CG34353
3R	13195546	3R_13195546_SNP [dm3] 3R_17369824_SNP [dm6]	A	G	7.202e^-4	1	INTERGENIC
3L	12492280	3L_12492280_SNP [dm3] 3L_12499180_SNP [dm6]	G	A	7.208e^-4	1	SYNONYMOUS_CODING CG10638 DOWNSTREAM CG10638 INTRON CR43868
X	6709323	X_6709323_SNP [dm3] X_6815290_SNP [dm6]	T	C	7.208e^-4	1	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15787432	3R_15787432_SNP [dm3] 3R_19961710_SNP [dm6]	G	T	7.224e^-4	1	INTRON Hs6st
3R	19782798	3R_19782798_SNP [dm3] 3R_23957076_SNP [dm6]	A	T	7.228e^-4	1	INTRON Aats-glupro	TF binding site mE1_TFBS_cad
2R	16084959	2R_16084959_SNP [dm3] 2R_20197454_SNP [dm6]	G	C	7.248e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4500166	2R_4500166_SNP [dm3] 2R_8612661_SNP [dm6]	A	C	7.269e^-4	1	DOWNSTREAM rgr INTRON CG8642
3R	1003912	3R_1003912_SNP [dm3] 3R_5178190_SNP [dm6]	G	A	7.282e^-4	1	DOWNSTREAM cno INTRON cno
2R	9807687	2R_9807687_SNP [dm3] 2R_13920182_SNP [dm6]	A	T	7.286e^-4	1	INTRON shot
3R	11068909	3R_11068909_SNP [dm3] 3R_15243187_SNP [dm6]	A	G	7.294e^-4	1	UPSTREAM Hsc70-4 & 1 other INTRON Hsc70-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13604006	2R_13604006_SNP [dm3] 2R_17716501_SNP [dm6]	T	C	7.300e^-4	1	START_GAINED CG6424 UTR_5_PRIME CG6424 UPSTREAM CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3227101	2L_3227101_SNP [dm3] 2L_3227101_SNP [dm6]	A	T	7.304e^-4	1	INTERGENIC
2R	17613676	2R_17613676_SNP [dm3] 2R_21726171_SNP [dm6]	A	C	7.335e^-4	1	INTERGENIC
2L	8970947	2L_8970947_SNP [dm3] 2L_8970947_SNP [dm6]	C	A	7.339e^-4	1	NON_SYNONYMOUS_CODING CG9541 DOWNSTREAM CG18088	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14994764	3R_14994764_SNP [dm3] 3R_19169042_SNP [dm6]	C	T	7.344e^-4	1	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6477629	2L_6477629_SNP [dm3] 2L_6477629_SNP [dm6]	A	G	7.352e^-4	1	UTR_3_PRIME Sec61alpha UPSTREAM CG9536	TF binding site mE1_TFBS_HSA
3R	21155619	3R_21155619_SNP [dm3] 3R_25329897_SNP [dm6]	G	T	7.360e^-4	1	UPSTREAM CHKov1 INTRON CHKov2	TF binding site mE1_TFBS_Trl
3R	9458498	3R_9458498_SNP [dm3] 3R_13632776_SNP [dm6]	C	T	7.366e^-4	1	INTRON CG10841
2R	18057329	2R_18057329_SNP [dm3] 2R_22169824_SNP [dm6]	G	A	7.367e^-4	1	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6307191	2L_6307191_SNP [dm3] 2L_6307191_SNP [dm6]	C	T	7.368e^-4	1	INTRON Ddr
2L	11502528	2L_11502528_SNP [dm3] 2L_11502528_SNP [dm6]	G	A	7.370e^-4	1	INTRON spz4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15570448	2L_15570448_SNP [dm3] 2L_15570448_SNP [dm6]	A	G	7.382e^-4	1	INTRON kek3
X	13990156	X_13990156_SNP [dm3] X_14096123_SNP [dm6]	T	C	7.386e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16928071	X_16928071_SNP [dm3] X_17034038_SNP [dm6]	C	A	7.391e^-4	1	INTRON CG45002
X	20430394	X_20430394_SNP [dm3] X_20559367_SNP [dm6]	C	A	7.398e^-4	1	INTRON RunxB
2L	16112115	2L_16112115_SNP [dm3] 2L_16112115_SNP [dm6]	G	A	7.408e^-4	1	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Survival_Paeruginosa phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results