DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.001e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2168 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15212876	2L_15212876_SNP [dm3] 2L_15212876_SNP [dm6]	T	C	8.015e^-7	0.705	INTERGENIC
3L	1419577	3L_1419577_SNP [dm3] 3L_1419577_SNP [dm6]	G	A	1.183e^-6	0.705	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1419578	3L_1419578_SNP [dm3] 3L_1419578_SNP [dm6]	T	A	1.700e^-6	0.705	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9105471	X_9105471_SNP [dm3] X_9211438_SNP [dm6]	T	A	1.715e^-6	0.705	UPSTREAM CG12119 INTERGENIC
3R	24346974	3R_24346974_SNP [dm3] 3R_28521252_SNP [dm6]	A	G	2.048e^-6	0.705	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
2R	13906946	2R_13906946_SNP [dm3] 2R_18019441_SNP [dm6]	C	T	2.981e^-6	0.705	SPLICE_SITE_REGION CG5084 SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17723005	3R_17723005_SNP [dm3] 3R_21897283_SNP [dm6]	G	A	3.073e^-6	0.705	INTRON CG6678
X	6386666	X_6386666_SNP [dm3] X_6492633_SNP [dm6]	A	G	3.617e^-6	0.705	INTRON CG42340
3L	9009460	3L_9009460_SNP [dm3] 3L_9016360_SNP [dm6]	G	A	4.155e^-6	0.705	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	14335709	2L_14335709_SNP [dm3] 2L_14335709_SNP [dm6]	C	T	4.168e^-6	0.705	INTRON CG33090
3R	8384828	3R_8384828_SNP [dm3] 3R_12559106_SNP [dm6]	T	C	4.203e^-6	0.705	INTRON Octbeta2R
2R	18257081	2R_18257081_SNP [dm3] 2R_22369576_SNP [dm6]	A	T	4.558e^-6	0.705	INTRON Liprin-gamma
3R	17723006	3R_17723006_SNP [dm3] 3R_21897284_SNP [dm6]	C	G	5.042e^-6	0.705	INTRON CG6678
3L	7592913	3L_7592913_SNP [dm3] 3L_7599813_SNP [dm6]	C	T	5.853e^-6	0.705	INTRON CG33275
2R	6691606	2R_6691606_SNP [dm3] 2R_10804101_SNP [dm6]	T	G	5.892e^-6	0.705	NON_SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_sens
X	11847104	X_11847104_SNP [dm3] X_11953071_SNP [dm6]	T	C	6.290e^-6	0.705	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6758075	2R_6758075_SNP [dm3] 2R_10870570_SNP [dm6]	T	A	6.391e^-6	0.705	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18980939	2R_18980939_INS [dm3] 2R_23093416_INS [dm6]	A	AA	8.288e^-6	0.737	INTRON CG9876
3L	9009321	3L_9009321_SNP [dm3] 3L_9016221_SNP [dm6]	A	G	8.625e^-6	0.737	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	13106529	2L_13106529_SNP [dm3] 2L_13106529_SNP [dm6]	A	G	9.035e^-6	0.737	UPSTREAM CG5142 INTERGENIC
X	6430923	X_6430923_SNP [dm3] X_6536890_SNP [dm6]	A	T	9.118e^-6	0.737	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18017451	2R_18017451_SNP [dm3] 2R_22129946_SNP [dm6]	C	A	9.226e^-6	0.737	DOWNSTREAM CG34205 INTRON NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8315324	3L_8315324_SNP [dm3] 3L_8322224_SNP [dm6]	C	A	1.024e^-5	0.737	UTR_3_PRIME CG13670
3L	761977	3L_761977_SNP [dm3] 3L_761977_SNP [dm6]	T	C	1.106e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	12459369	2R_12459369_SNP [dm3] 2R_16571864_SNP [dm6]	C	G	1.150e^-5	0.737	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3L	9009392	3L_9009392_SNP [dm3] 3L_9016292_SNP [dm6]	G	T	1.153e^-5	0.737	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	12459530	2R_12459530_SNP [dm3] 2R_16572025_SNP [dm6]	T	G	1.186e^-5	0.737	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	18433088	2L_18433088_SNP [dm3] 2L_18433088_SNP [dm6]	T	A	1.197e^-5	0.737	UPSTREAM CR44488 INTERGENIC
2R	9134323	2R_9134323_SNP [dm3] 2R_13246818_SNP [dm6]	G	C	1.235e^-5	0.737	INTRON Mp20	TF binding site mE1_TFBS_cad
2L	18302591	2L_18302591_SNP [dm3] 2L_18302591_SNP [dm6]	A	G	1.305e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	16667520	X_16667520_SNP [dm3] X_16773487_SNP [dm6]	G	T	1.311e^-5	0.737	INTRON if	TF binding site BDTNP1_TFBS_da
2L	14448141	2L_14448141_SNP [dm3] 2L_14448141_SNP [dm6]	T	C	1.358e^-5	0.737	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17722665	3R_17722665_SNP [dm3] 3R_21896943_SNP [dm6]	C	T	1.469e^-5	0.737	INTRON CG6678
2L	15779220	2L_15779220_SNP [dm3] 2L_15779220_SNP [dm6]	C	A	1.530e^-5	0.737	INTERGENIC
2L	844501	2L_844501_SNP [dm3] 2L_844501_SNP [dm6]	T	C	1.585e^-5	0.737	INTRON drongo
3L	11696415	3L_11696415_INS [dm3] 3L_11703315_INS [dm6]	T	TTGTTG	1.659e^-5	0.737	INTRON CG11658
2L	954186	2L_954186_SNP [dm3] 2L_954186_SNP [dm6]	A	C	1.676e^-5	0.737	INTRON CG4341
2L	18292104	2L_18292104_SNP [dm3] 2L_18292104_SNP [dm6]	T	C	1.743e^-5	0.737	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
X	18806774	X_18806774_DEL [dm3] X_18912741_DEL [dm6]	GATTAATATG	G	1.768e^-5	0.737	DOWNSTREAM CG7378 EXON CR44708
3R	24246693	3R_24246693_SNP [dm3] 3R_28420971_SNP [dm6]	T	G	1.773e^-5	0.737	INTRON beat-VI
3R	23811543	3R_23811543_SNP [dm3] 3R_27985821_SNP [dm6]	C	A	1.781e^-5	0.737	INTRON betaTub97EF
2R	9871083	2R_9871083_INS [dm3] 2R_13983578_INS [dm6]	A	AT	1.782e^-5	0.737	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	19312020	X_19312020_SNP [dm3] X_19417987_SNP [dm6]	T	C	1.788e^-5	0.737	INTRON kek5
2L	10656440	2L_10656440_SNP [dm3] 2L_10656440_SNP [dm6]	C	T	1.866e^-5	0.737	INTERGENIC
X	18755640	X_18755640_SNP [dm3] X_18861607_SNP [dm6]	A	C	1.980e^-5	0.737	UTR_3_PRIME CG32544 & 1 other
X	7062619	X_7062619_SNP [dm3] X_7168586_SNP [dm6]	T	A	1.981e^-5	0.737	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	761982	3L_761982_SNP [dm3] 3L_761982_SNP [dm6]	A	G	2.045e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
X	21435565	X_21435565_SNP [dm3] X_21564538_SNP [dm6]	T	C	2.054e^-5	0.737	INTERGENIC
2R	12459526	2R_12459526_SNP [dm3] 2R_16572021_SNP [dm6]	A	C	2.085e^-5	0.737	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
X	6430989	X_6430989_SNP [dm3] X_6536956_SNP [dm6]	C	T	2.095e^-5	0.737	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23199026	3L_23199026_INS [dm3] 3L_23205926_INS [dm6]	A	ACATA	2.104e^-5	0.737	UPSTREAM nAChRalpha4 INTERGENIC	transposable element FlyBase
3R	6477241	3R_6477241_SNP [dm3] 3R_10651519_SNP [dm6]	C	G	2.213e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17892904	2L_17892904_SNP [dm3] 2L_17892904_SNP [dm6]	G	A	2.236e^-5	0.737	UPSTREAM CR43420 INTERGENIC
3R	21587394	3R_21587394_SNP [dm3] 3R_25761672_SNP [dm6]	G	T	2.243e^-5	0.737	UTR_5_PRIME LpR1 UPSTREAM LpR1
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	2.251e^-5	0.737	INTRON fra
2R	8731731	2R_8731731_SNP [dm3] 2R_12844226_SNP [dm6]	C	T	2.437e^-5	0.737	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8731736	2R_8731736_SNP [dm3] 2R_12844231_SNP [dm6]	G	C	2.457e^-5	0.737	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22034519	2L_22034519_SNP [dm3] 2L_22034519_SNP [dm6]	T	C	2.649e^-5	0.737	DOWNSTREAM CR45335 INTERGENIC
X	21435221	X_21435221_SNP [dm3] X_21564194_SNP [dm6]	A	C	2.650e^-5	0.737	INTERGENIC
3L	16012475	3L_16012475_SNP [dm3] 3L_16019375_SNP [dm6]	A	T	2.765e^-5	0.737	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6060449	2R_6060449_SNP [dm3] 2R_10172944_SNP [dm6]	T	A	2.787e^-5	0.737	INTRON KCNQ
2R	9134296	2R_9134296_SNP [dm3] 2R_13246791_SNP [dm6]	A	T	2.797e^-5	0.737	INTRON Mp20	TF binding site mE1_TFBS_cad
2R	9134331	2R_9134331_SNP [dm3] 2R_13246826_SNP [dm6]	G	C	2.797e^-5	0.737	INTRON Mp20	TF binding site mE1_TFBS_cad
3R	11044864	3R_11044864_SNP [dm3] 3R_15219142_SNP [dm6]	A	C	2.798e^-5	0.737	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6477238	3R_6477238_SNP [dm3] 3R_10651516_SNP [dm6]	C	T	2.810e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	2.864e^-5	0.737	INTRON CG5888
2L	18299813	2L_18299813_SNP [dm3] 2L_18299813_SNP [dm6]	C	A	2.895e^-5	0.737	INTERGENIC
3L	9139858	3L_9139858_INS [dm3] 3L_9146758_INS [dm6]	G	GCATG	2.911e^-5	0.737	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi
3R	6475532	3R_6475532_SNP [dm3] 3R_10649810_SNP [dm6]	C	T	2.926e^-5	0.737	INTERGENIC
3L	9635070	3L_9635070_SNP [dm3] 3L_9641970_SNP [dm6]	T	A	2.932e^-5	0.737	DOWNSTREAM CG18180 INTRON fry
3R	5414522	3R_5414522_SNP [dm3] 3R_9588800_SNP [dm6]	A	G	2.936e^-5	0.737	NON_SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15940117	3L_15940117_SNP [dm3] 3L_15947017_SNP [dm6]	T	C	2.974e^-5	0.737	SYNONYMOUS_CODING Pka-C3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17660182	2R_17660182_SNP [dm3] 2R_21772677_SNP [dm6]	C	T	2.992e^-5	0.737	UPSTREAM CG4021 INTERGENIC
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	3.034e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	12491431	2R_12491431_SNP [dm3] 2R_16603926_SNP [dm6]	A	C	3.036e^-5	0.737	INTRON CG8303
3L	8315282	3L_8315282_SNP [dm3] 3L_8322182_SNP [dm6]	C	T	3.132e^-5	0.737	SYNONYMOUS_CODING CG13670
2R	10324024	2R_10324024_SNP [dm3] 2R_14436519_SNP [dm6]	G	C	3.184e^-5	0.737	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	6477712	3R_6477712_SNP [dm3] 3R_10651990_SNP [dm6]	T	A	3.184e^-5	0.737	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_prd
2R	7545055	2R_7545055_SNP [dm3] 2R_11657550_SNP [dm6]	T	C	3.205e^-5	0.737	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5413750	3R_5413750_SNP [dm3] 3R_9588028_SNP [dm6]	C	T	3.235e^-5	0.737	SYNONYMOUS_CODING P58IPK	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	9823323	2R_9823323_DEL [dm3] 2R_13935818_DEL [dm6]	TTTCTT	G	3.313e^-5	0.737	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13680542	X_13680542_SNP [dm3] X_13786509_SNP [dm6]	C	T	3.409e^-5	0.737	INTRON inaE	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4954010	2L_4954010_SNP [dm3] 2L_4954010_SNP [dm6]	C	T	3.522e^-5	0.737	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
3R	6492040	3R_6492040_SNP [dm3] 3R_10666318_SNP [dm6]	G	A	3.538e^-5	0.737	INTERGENIC
3R	8512976	3R_8512976_SNP [dm3] 3R_12687254_SNP [dm6]	A	T	3.603e^-5	0.737	INTRON kar
2R	9134321	2R_9134321_SNP [dm3] 2R_13246816_SNP [dm6]	T	C	3.704e^-5	0.737	INTRON Mp20	TF binding site mE1_TFBS_cad
2R	9134339	2R_9134339_SNP [dm3] 2R_13246834_SNP [dm6]	G	T	3.704e^-5	0.737	INTRON Mp20	TF binding site mE1_TFBS_cad
3R	20531734	3R_20531734_SNP [dm3] 3R_24706012_SNP [dm6]	G	A	3.708e^-5	0.737	SYNONYMOUS_CODING slo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24246650	3R_24246650_SNP [dm3] 3R_28420928_SNP [dm6]	A	G	3.747e^-5	0.737	INTRON beat-VI
2L	15287203	2L_15287203_SNP [dm3] 2L_15287203_SNP [dm6]	T	C	3.747e^-5	0.737	INTERGENIC
2R	9871085	2R_9871085_SNP [dm3] 2R_13983580_SNP [dm6]	G	T	3.784e^-5	0.737	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	10324022	2R_10324022_SNP [dm3] 2R_14436517_SNP [dm6]	G	T	3.854e^-5	0.737	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	17661418	2R_17661418_SNP [dm3] 2R_21773913_SNP [dm6]	C	T	3.868e^-5	0.737	SYNONYMOUS_CODING CG4021
2L	10661693	2L_10661693_SNP [dm3] 2L_10661693_SNP [dm6]	T	A	3.886e^-5	0.737	UPSTREAM CG31871 INTERGENIC
3R	8381714	3R_8381714_SNP [dm3] 3R_12555992_SNP [dm6]	C	T	3.927e^-5	0.737	INTRON Octbeta2R
2R	6060444	2R_6060444_SNP [dm3] 2R_10172939_SNP [dm6]	C	T	3.999e^-5	0.737	INTRON KCNQ
2R	6060445	2R_6060445_SNP [dm3] 2R_10172940_SNP [dm6]	C	T	3.999e^-5	0.737	INTRON KCNQ
2L	14513742	2L_14513742_SNP [dm3] 2L_14513742_SNP [dm6]	C	G	4.038e^-5	0.737	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	7545061	2R_7545061_SNP [dm3] 2R_11657556_SNP [dm6]	G	T	4.084e^-5	0.737	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4953537	2L_4953537_SNP [dm3] 2L_4953537_SNP [dm6]	C	A	4.131e^-5	0.737	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
2R	7545054	2R_7545054_SNP [dm3] 2R_11657549_SNP [dm6]	T	G	4.224e^-5	0.737	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17659538	2R_17659538_SNP [dm3] 2R_21772033_SNP [dm6]	A	G	4.289e^-5	0.737	INTERGENIC
2R	18177114	2R_18177114_SNP [dm3] 2R_22289609_SNP [dm6]	A	G	4.308e^-5	0.737	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	10655219	3L_10655219_SNP [dm3] 3L_10662119_SNP [dm6]	C	T	4.404e^-5	0.737	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	4.412e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	4.412e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4953763	2L_4953763_SNP [dm3] 2L_4953763_SNP [dm6]	C	T	4.416e^-5	0.737	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
X	11846389	X_11846389_SNP [dm3] X_11952356_SNP [dm6]	T	C	4.438e^-5	0.737	INTRON cac
2R	12640961	2R_12640961_SNP [dm3] 2R_16753456_SNP [dm6]	A	G	4.463e^-5	0.737	SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
2L	10661690	2L_10661690_SNP [dm3] 2L_10661690_SNP [dm6]	A	T	4.468e^-5	0.737	UPSTREAM CG31871 INTERGENIC
2L	13448719	2L_13448719_SNP [dm3] 2L_13448719_SNP [dm6]	T	G	4.490e^-5	0.737	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
X	16785642	X_16785642_SNP [dm3] X_16891609_SNP [dm6]	G	A	4.491e^-5	0.737	DOWNSTREAM CG13002 INTERGENIC
X	21442148	X_21442148_SNP [dm3] X_21571121_SNP [dm6]	G	C	4.506e^-5	0.737	INTERGENIC
3L	8314979	3L_8314979_SNP [dm3] 3L_8321879_SNP [dm6]	T	C	4.532e^-5	0.737	SYNONYMOUS_CODING CG13670
3L	4028722	3L_4028722_SNP [dm3] 3L_4028722_SNP [dm6]	T	A	4.545e^-5	0.737	NON_SYNONYMOUS_CODING Gr64b SPLICE_SITE_REGION Gr64b & 1 other UTR_5_PRIME Gr64c DOWNSTREAM Gr64a	TF binding site mE1_TFBS_inv
2L	18286887	2L_18286887_SNP [dm3] 2L_18286887_SNP [dm6]	A	G	4.561e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10661685	2L_10661685_SNP [dm3] 2L_10661685_SNP [dm6]	G	C	4.626e^-5	0.74	UPSTREAM CG31871 INTERGENIC
2R	6674124	2R_6674124_SNP [dm3] 2R_10786619_SNP [dm6]	T	C	4.680e^-5	0.74	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	4.737e^-5	0.74	INTRON CR44833	regulatory region REDfly_CRMs
2R	12459386	2R_12459386_SNP [dm3] 2R_16571881_SNP [dm6]	C	A	4.743e^-5	0.74	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	6479145	3R_6479145_SNP [dm3] 3R_10653423_SNP [dm6]	C	G	4.840e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	24465853	3R_24465853_SNP [dm3] 3R_28640131_SNP [dm6]	C	T	4.857e^-5	0.74	INTERGENIC
2L	15246481	2L_15246481_SNP [dm3] 2L_15246481_SNP [dm6]	C	T	5.000e^-5	0.74	UPSTREAM ZnT35C INTRON ZnT35C
X	6201926	X_6201926_SNP [dm3] X_6307893_SNP [dm6]	A	G	5.033e^-5	0.74	INTERGENIC
3R	2863864	3R_2863864_SNP [dm3] 3R_7038142_SNP [dm6]	A	C	5.069e^-5	0.74	EXON CR44933	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6474624	3R_6474624_SNP [dm3] 3R_10648902_SNP [dm6]	G	T	5.104e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	2694895	2L_2694895_SNP [dm3] 2L_2694895_SNP [dm6]	T	G	5.110e^-5	0.74	DOWNSTREAM CG15398 INTRON CG31690
2L	18314708	2L_18314708_SNP [dm3] 2L_18314708_SNP [dm6]	T	A	5.147e^-5	0.74	UPSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9009444	3L_9009444_SNP [dm3] 3L_9016344_SNP [dm6]	C	G	5.157e^-5	0.74	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	17664511	2R_17664511_SNP [dm3] 2R_21777006_SNP [dm6]	A	T	5.215e^-5	0.74	INTERGENIC
2L	3105577	2L_3105577_SNP [dm3] 2L_3105577_SNP [dm6]	G	C	5.217e^-5	0.74	INTRON toc
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	5.240e^-5	0.74	SYNONYMOUS_CODING Or65a
2R	12640971	2R_12640971_SNP [dm3] 2R_16753466_SNP [dm6]	G	A	5.250e^-5	0.74	NON_SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	5.539e^-5	0.761	INTRON CG5888
2R	19112370	2R_19112370_SNP [dm3] 2R_23224847_SNP [dm6]	G	A	5.613e^-5	0.761	INTERGENIC
X	7701015	X_7701015_SNP [dm3] X_7806982_SNP [dm6]	G	C	5.644e^-5	0.761	INTERGENIC
2R	10405491	2R_10405491_SNP [dm3] 2R_14517986_SNP [dm6]	T	C	5.657e^-5	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8313256	3L_8313256_SNP [dm3] 3L_8320156_SNP [dm6]	T	C	5.686e^-5	0.761	UPSTREAM CG13670 INTERGENIC
2L	11287143	2L_11287143_SNP [dm3] 2L_11287143_SNP [dm6]	G	A	5.701e^-5	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11287144	2L_11287144_SNP [dm3] 2L_11287144_SNP [dm6]	C	T	5.701e^-5	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2429275	X_2429275_SNP [dm3] X_2535242_SNP [dm6]	A	C	5.722e^-5	0.761	INTRON trol	TF binding site BDTNP1_TFBS_dl
3R	26398603	3R_26398603_SNP [dm3] 3R_30572881_SNP [dm6]	T	C	5.798e^-5	0.762	INTRON tmod
3R	20259750	3R_20259750_SNP [dm3] 3R_24434028_SNP [dm6]	T	C	5.809e^-5	0.762	INTRON nAChRalpha1
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	5.864e^-5	0.762	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3L	761978	3L_761978_SNP [dm3] 3L_761978_SNP [dm6]	G	T	5.920e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	9134343	2R_9134343_SNP [dm3] 2R_13246838_SNP [dm6]	A	C	5.931e^-5	0.762	INTRON Mp20	TF binding site mE1_TFBS_cad
2L	9036519	2L_9036519_SNP [dm3] 2L_9036519_SNP [dm6]	T	A	6.031e^-5	0.763	INTERGENIC
2L	954279	2L_954279_SNP [dm3] 2L_954279_SNP [dm6]	A	G	6.066e^-5	0.763	INTRON CG4341
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	6.123e^-5	0.763	INTRON fas
2R	9134356	2R_9134356_DEL [dm3] 2R_13246851_DEL [dm6]	ATTAC	A	6.138e^-5	0.763	INTRON Mp20	TF binding site mE1_TFBS_cad
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	6.162e^-5	0.763	INTERGENIC
3L	1419650	3L_1419650_SNP [dm3] 3L_1419650_SNP [dm6]	T	C	6.187e^-5	0.763	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11847047	X_11847047_SNP [dm3] X_11953014_SNP [dm6]	A	T	6.299e^-5	0.764	INTRON cac	TF binding site mE1_TFBS_HSA
2R	15834034	2R_15834034_SNP [dm3] 2R_19946529_SNP [dm6]	G	A	6.318e^-5	0.764	SPLICE_SITE_REGION CG42691 UPSTREAM CG42690 & 1 other INTRON CG42691	TF binding site BDTNP1_TFBS_dl
X	16415213	X_16415213_INS [dm3] X_16521180_INS [dm6]	A	ATATTCGATATA...	6.319e^-5	0.764	INTRON para
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	6.487e^-5	0.765	UPSTREAM CG13332 INTRON Vmat
X	21430218	X_21430218_DEL [dm3] X_21559191_DEL [dm6]	GCCACCACAG	G	6.609e^-5	0.765	INTERGENIC
2L	9552272	2L_9552272_SNP [dm3] 2L_9552272_SNP [dm6]	A	G	6.626e^-5	0.765	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11617750	3R_11617750_SNP [dm3] 3R_15792028_SNP [dm6]	G	A	6.683e^-5	0.765	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl
2L	18294292	2L_18294292_SNP [dm3] 2L_18294292_SNP [dm6]	A	T	6.703e^-5	0.765	UPSTREAM CG5790 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	12459431	2R_12459431_DEL [dm3] 2R_16571926_DEL [dm6]	CTTATTAATAGATTCTGCTA...	C	6.729e^-5	0.765	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	12491430	2R_12491430_SNP [dm3] 2R_16603925_SNP [dm6]	G	A	6.735e^-5	0.765	INTRON CG8303
2R	19234070	2R_19234070_SNP [dm3] 2R_23346547_SNP [dm6]	G	A	6.780e^-5	0.765	UPSTREAM CG9863 INTRON CG3502	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11846879	X_11846879_SNP [dm3] X_11952846_SNP [dm6]	T	A	6.815e^-5	0.765	INTRON cac	TF binding site mE1_TFBS_HSA
3L	8857709	3L_8857709_SNP [dm3] 3L_8864609_SNP [dm6]	T	C	6.818e^-5	0.765	INTRON dally
2R	12491543	2R_12491543_SNP [dm3] 2R_16604038_SNP [dm6]	T	C	6.894e^-5	0.765	INTRON CG8303	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	18286869	2L_18286869_SNP [dm3] 2L_18286869_SNP [dm6]	T	A	6.947e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6478518	3R_6478518_SNP [dm3] 3R_10652796_SNP [dm6]	A	G	6.969e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14470254	2L_14470254_DEL [dm3] 2L_14470254_DEL [dm6]	AAA	A	6.976e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14305893	3R_14305893_SNP [dm3] 3R_18480171_SNP [dm6]	C	G	7.001e^-5	0.765	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6279954	X_6279954_SNP [dm3] X_6385921_SNP [dm6]	C	T	7.106e^-5	0.765	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13010424	X_13010424_SNP [dm3] X_13116391_SNP [dm6]	A	T	7.108e^-5	0.765	INTRON CG42237
2R	12638614	2R_12638614_SNP [dm3] 2R_16751109_SNP [dm6]	T	G	7.165e^-5	0.765	NON_SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2L	7470345	2L_7470345_SNP [dm3] 2L_7470345_SNP [dm6]	T	G	7.176e^-5	0.765	UPSTREAM CG6055 INTRON CG6055
X	21435293	X_21435293_SNP [dm3] X_21564266_SNP [dm6]	A	G	7.188e^-5	0.765	INTERGENIC
2R	20473469	2R_20473469_SNP [dm3] 2R_24585946_SNP [dm6]	G	A	7.201e^-5	0.765	INTRON pio
2R	10583896	2R_10583896_SNP [dm3] 2R_14696391_SNP [dm6]	A	G	7.225e^-5	0.765	INTRON mspo
2L	11872213	2L_11872213_SNP [dm3] 2L_11872213_SNP [dm6]	T	A	7.373e^-5	0.772	INTRON Pde1c
2L	11872218	2L_11872218_DEL [dm3] 2L_11872218_DEL [dm6]	TTTATAGAACTT...	T	7.373e^-5	0.772	INTRON Pde1c
2R	12640937	2R_12640937_SNP [dm3] 2R_16753432_SNP [dm6]	A	G	7.520e^-5	0.779	SYNONYMOUS_CODING unc-104 UTR_3_PRIME unc-104
2R	7602336	2R_7602336_SNP [dm3] 2R_11714831_SNP [dm6]	C	G	7.535e^-5	0.779	INTRON pyr
3R	16163339	3R_16163339_SNP [dm3] 3R_20337617_SNP [dm6]	C	A	7.562e^-5	0.779	INTERGENIC
2R	10218356	2R_10218356_SNP [dm3] 2R_14330851_SNP [dm6]	C	T	7.601e^-5	0.779	INTRON Shroom
3R	21356672	3R_21356672_SNP [dm3] 3R_25530950_SNP [dm6]	A	T	7.655e^-5	0.78	INTRON msi
2L	18299615	2L_18299615_SNP [dm3] 2L_18299615_SNP [dm6]	G	A	7.723e^-5	0.78	INTERGENIC
2L	10656503	2L_10656503_SNP [dm3] 2L_10656503_SNP [dm6]	G	C	7.752e^-5	0.78	INTERGENIC
2L	953608	2L_953608_INS [dm3] 2L_953608_INS [dm6]	T	TG	7.777e^-5	0.78	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18373589	2L_18373589_SNP [dm3] 2L_18373589_SNP [dm6]	G	C	7.913e^-5	0.786	INTRON Fas3
2L	18290464	2L_18290464_SNP [dm3] 2L_18290464_SNP [dm6]	C	T	7.918e^-5	0.786	DOWNSTREAM CG43362 EXON CR44696
2R	10830564	2R_10830564_SNP [dm3] 2R_14943059_SNP [dm6]	G	C	7.981e^-5	0.788	SYNONYMOUS_CODING CG10257
2L	18294588	2L_18294588_SNP [dm3] 2L_18294588_SNP [dm6]	A	C	8.060e^-5	0.788	UPSTREAM CG5790 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16163281	3R_16163281_SNP [dm3] 3R_20337559_SNP [dm6]	C	T	8.228e^-5	0.788	INTERGENIC
2L	11872189	2L_11872189_SNP [dm3] 2L_11872189_SNP [dm6]	G	A	8.232e^-5	0.788	INTRON Pde1c
2L	15212157	2L_15212157_SNP [dm3] 2L_15212157_SNP [dm6]	A	C	8.239e^-5	0.788	INTERGENIC
3R	24246687	3R_24246687_SNP [dm3] 3R_28420965_SNP [dm6]	A	G	8.255e^-5	0.788	INTRON beat-VI
3L	11100939	3L_11100939_SNP [dm3] 3L_11107839_SNP [dm6]	A	G	8.295e^-5	0.788	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3R	6481606	3R_6481606_SNP [dm3] 3R_10655884_SNP [dm6]	T	G	8.326e^-5	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18120027	2R_18120027_SNP [dm3] 2R_22232522_SNP [dm6]	A	G	8.341e^-5	0.788	INTERGENIC
3L	17196177	3L_17196177_SNP [dm3] 3L_17203077_SNP [dm6]	A	G	8.359e^-5	0.788	INTRON Rbp6
2L	11872191	2L_11872191_DEL [dm3] 2L_11872191_DEL [dm6]	TTTTCTAAAGATAAAATAC...	T	8.405e^-5	0.788	INTRON Pde1c
3L	6632300	3L_6632300_SNP [dm3] 3L_6639200_SNP [dm6]	A	T	8.472e^-5	0.788	INTERGENIC
X	11846878	X_11846878_SNP [dm3] X_11952845_SNP [dm6]	T	C	8.565e^-5	0.788	INTRON cac	TF binding site mE1_TFBS_HSA
2L	14698503	2L_14698503_SNP [dm3] 2L_14698503_SNP [dm6]	T	C	8.592e^-5	0.788	INTERGENIC
2L	2694894	2L_2694894_SNP [dm3] 2L_2694894_SNP [dm6]	T	G	8.666e^-5	0.788	DOWNSTREAM CG15398 INTRON CG31690
3L	9558954	3L_9558954_SNP [dm3] 3L_9565854_SNP [dm6]	C	T	8.718e^-5	0.788	INTRON CG42673
3L	1455098	3L_1455098_SNP [dm3] 3L_1455098_SNP [dm6]	T	G	8.723e^-5	0.788	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6575418	3R_6575418_SNP [dm3] 3R_10749696_SNP [dm6]	C	T	8.739e^-5	0.788	INTRON TkR86C
3R	26332435	3R_26332435_SNP [dm3] 3R_30506713_SNP [dm6]	G	A	8.745e^-5	0.788	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
X	11846472	X_11846472_SNP [dm3] X_11952439_SNP [dm6]	G	A	8.816e^-5	0.791	INTRON cac
2R	14119851	2R_14119851_DEL [dm3] 2R_18232346_DEL [dm6]	ATATGGGAGTTAGCTTTGTA...	A	8.931e^-5	0.797	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10388656	X_10388656_SNP [dm3] X_10494623_SNP [dm6]	G	C	9.019e^-5	0.801	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	9.161e^-5	0.806	INTERGENIC
2R	10830599	2R_10830599_SNP [dm3] 2R_14943094_SNP [dm6]	C	A	9.172e^-5	0.806	INTRON CG10257
2R	10824992	2R_10824992_SNP [dm3] 2R_14937487_SNP [dm6]	G	A	9.201e^-5	0.806	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2L	13611104	2L_13611104_SNP [dm3] 2L_13611104_SNP [dm6]	A	G	9.315e^-5	0.807	INTRON kuz
2L	1373356	2L_1373356_DEL [dm3] 2L_1373356_DEL [dm6]	CAGC	C	9.379e^-5	0.807	INTERGENIC
2L	953631	2L_953631_INS [dm3] 2L_953631_INS [dm6]	C	CAGGTGGCTTTAAAGCGGTC...	9.515e^-5	0.807	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	809705	2L_809705_SNP [dm3] 2L_809705_SNP [dm6]	C	T	9.537e^-5	0.807	UPSTREAM Nnf1b INTERGENIC
2L	14513721	2L_14513721_INS [dm3] 2L_14513721_INS [dm6]	G	GG	9.628e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	9408342	2R_9408342_SNP [dm3] 2R_13520837_SNP [dm6]	T	G	9.669e^-5	0.807	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18793793	2R_18793793_SNP [dm3] 2R_22906270_SNP [dm6]	C	A	9.730e^-5	0.807	INTRON nahoda
2R	9408345	2R_9408345_SNP [dm3] 2R_13520840_SNP [dm6]	C	T	9.749e^-5	0.807	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26246636	3R_26246636_SNP [dm3] 3R_30420914_SNP [dm6]	T	A	9.790e^-5	0.807	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	11195082	3R_11195082_SNP [dm3] 3R_15369360_SNP [dm6]	G	A	9.824e^-5	0.807	SYNONYMOUS_CODING CG14868 DOWNSTREAM CG6136	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8316882	3L_8316882_SNP [dm3] 3L_8323782_SNP [dm6]	C	A	9.839e^-5	0.807	INTERGENIC
2L	18298179	2L_18298179_SNP [dm3] 2L_18298179_SNP [dm6]	A	T	9.902e^-5	0.807	DOWNSTREAM CG5790 INTERGENIC
3R	22805834	3R_22805834_SNP [dm3] 3R_26980112_SNP [dm6]	C	A	9.981e^-5	0.807	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
2R	11891295	2R_11891295_SNP [dm3] 2R_16003790_SNP [dm6]	G	T	1.002e^-4	0.807	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18303534	2L_18303534_SNP [dm3] 2L_18303534_SNP [dm6]	T	G	1.017e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	761985	3L_761985_SNP [dm3] 3L_761985_SNP [dm6]	G	T	1.017e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	15779227	2L_15779227_SNP [dm3] 2L_15779227_SNP [dm6]	C	T	1.028e^-4	0.807	INTERGENIC
2R	7207435	2R_7207435_SNP [dm3] 2R_11319930_SNP [dm6]	G	A	1.035e^-4	0.807	SYNONYMOUS_CODING Or47b
X	21441711	X_21441711_SNP [dm3] X_21570684_SNP [dm6]	A	T	1.035e^-4	0.807	INTERGENIC
2R	12018263	2R_12018263_SNP [dm3] 2R_16130758_SNP [dm6]	T	G	1.036e^-4	0.807	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3372508	2L_3372508_DEL [dm3] 2L_3372508_DEL [dm6]	CATAC	C	1.042e^-4	0.807	INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	16228578	2L_16228578_DEL [dm3] 2L_16228578_DEL [dm6]	AATAATAATGAAAATA...	T	1.052e^-4	0.807	INTERGENIC
3R	3800854	3R_3800854_SNP [dm3] 3R_7975132_SNP [dm6]	A	T	1.055e^-4	0.807	SPLICE_SITE_REGION CD98hc INTRON CD98hc	TF binding site mE1_TFBS_cad
2L	18359814	2L_18359814_SNP [dm3] 2L_18359814_SNP [dm6]	C	G	1.055e^-4	0.807	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26398631	3R_26398631_SNP [dm3] 3R_30572909_SNP [dm6]	A	G	1.063e^-4	0.807	INTRON tmod
2R	8900205	2R_8900205_SNP [dm3] 2R_13012700_SNP [dm6]	A	G	1.069e^-4	0.807	INTERGENIC
X	11332357	X_11332357_SNP [dm3] X_11438324_SNP [dm6]	C	A	1.069e^-4	0.807	INTRON Evi5
2L	18282683	2L_18282683_SNP [dm3] 2L_18282683_SNP [dm6]	T	C	1.073e^-4	0.807	INTERGENIC
X	13572682	X_13572682_SNP [dm3] X_13678649_SNP [dm6]	C	T	1.074e^-4	0.807	SYNONYMOUS_CODING CG12177 DOWNSTREAM CG11162
2L	5879176	2L_5879176_SNP [dm3] 2L_5879176_SNP [dm6]	T	C	1.078e^-4	0.807	UTR_5_PRIME rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18287899	2L_18287899_SNP [dm3] 2L_18287899_SNP [dm6]	C	T	1.079e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13564800	2R_13564800_SNP [dm3] 2R_17677295_SNP [dm6]	T	C	1.080e^-4	0.807	INTRON Sema-1b
3R	7760597	3R_7760597_SNP [dm3] 3R_11934875_SNP [dm6]	A	C	1.081e^-4	0.807	INTRON Cad87A
3L	2577647	3L_2577647_DEL [dm3] 3L_2577647_DEL [dm6]	ACTTGTTCAAAA...	A	1.082e^-4	0.807	INTRON msn	regulatory region REDfly_CRMs
3L	17688489	3L_17688489_SNP [dm3] 3L_17695389_SNP [dm6]	T	G	1.092e^-4	0.807	INTRON Ccn
2L	14931102	2L_14931102_SNP [dm3] 2L_14931102_SNP [dm6]	A	G	1.094e^-4	0.807	DOWNSTREAM CG3491 INTRON CG42313
2L	953617	2L_953617_SNP [dm3] 2L_953617_SNP [dm6]	G	A	1.099e^-4	0.807	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6146573	2L_6146573_SNP [dm3] 2L_6146573_SNP [dm6]	G	A	1.110e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	16422759	3R_16422759_SNP [dm3] 3R_20597037_SNP [dm6]	G	A	1.114e^-4	0.807	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11629560	2R_11629560_DEL [dm3] 2R_15742055_DEL [dm6]	TTT	T	1.114e^-4	0.807	INTRON CG30089
X	20927202	X_20927202_SNP [dm3] X_21056175_SNP [dm6]	A	G	1.116e^-4	0.807	INTRON bves	TF binding site BDTNP1_TFBS_dl
3R	25953471	3R_25953471_SNP [dm3] 3R_30127749_SNP [dm6]	G	T	1.119e^-4	0.807	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	21647829	3R_21647829_SNP [dm3] 3R_25822107_SNP [dm6]	C	T	1.136e^-4	0.807	INTERGENIC
2L	9088115	2L_9088115_SNP [dm3] 2L_9088115_SNP [dm6]	G	A	1.139e^-4	0.807	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14686412	3L_14686412_SNP [dm3] 3L_14693312_SNP [dm6]	A	G	1.140e^-4	0.807	INTRON ome
X	3287796	X_3287796_SNP [dm3] X_3393763_SNP [dm6]	C	T	1.142e^-4	0.807	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad
X	9732525	X_9732525_SNP [dm3] X_9838492_SNP [dm6]	A	T	1.142e^-4	0.807	INTRON CG32698
2L	15428081	2L_15428081_SNP [dm3] 2L_15428081_SNP [dm6]	G	A	1.143e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14120187	2R_14120187_INS [dm3] 2R_18232682_INS [dm6]	A	GAGAGAG	1.145e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18288750	2L_18288750_SNP [dm3] 2L_18288750_SNP [dm6]	G	A	1.145e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	17660816	2R_17660816_SNP [dm3] 2R_21773311_SNP [dm6]	G	T	1.145e^-4	0.807	START_GAINED CG4021 UTR_5_PRIME CG4021
2R	14091598	2R_14091598_SNP [dm3] 2R_18204093_SNP [dm6]	G	A	1.155e^-4	0.807	INTERGENIC
2L	3857778	2L_3857778_INS [dm3] 2L_3857778_INS [dm6]	A	AA	1.162e^-4	0.807	UPSTREAM CR45450 INTERGENIC
X	6299767	X_6299767_SNP [dm3] X_6405734_SNP [dm6]	C	T	1.164e^-4	0.807	INTERGENIC
3L	1419647	3L_1419647_SNP [dm3] 3L_1419647_SNP [dm6]	T	A	1.179e^-4	0.807	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22805833	3R_22805833_SNP [dm3] 3R_26980111_SNP [dm6]	G	C	1.183e^-4	0.807	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
X	14295229	X_14295229_SNP [dm3] X_14401196_SNP [dm6]	A	C	1.185e^-4	0.807	INTRON dpr8
3L	21590097	3L_21590097_SNP [dm3] 3L_21596997_SNP [dm6]	T	C	1.186e^-4	0.807	INTRON TfAP-2	TF binding site mE1_TFBS_cad
2R	10830561	2R_10830561_SNP [dm3] 2R_14943056_SNP [dm6]	T	C	1.196e^-4	0.807	SYNONYMOUS_CODING CG10257
3R	5757246	3R_5757246_SNP [dm3] 3R_9931524_SNP [dm6]	C	G	1.198e^-4	0.807	INTRON Glut4EF
2R	8499929	2R_8499929_SNP [dm3] 2R_12612424_SNP [dm6]	T	A	1.199e^-4	0.807	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	6474654	3R_6474654_SNP [dm3] 3R_10648932_SNP [dm6]	C	T	1.201e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	9732526	X_9732526_DEL [dm3] X_9838493_DEL [dm6]	ATGG	A	1.206e^-4	0.807	INTRON CG32698
2R	13558430	2R_13558430_DEL [dm3] 2R_17670925_DEL [dm6]	AT	C	1.208e^-4	0.807	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
3R	19175163	3R_19175163_SNP [dm3] 3R_23349441_SNP [dm6]	G	C	1.212e^-4	0.807	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20057260	2L_20057260_SNP [dm3] 2L_20057260_SNP [dm6]	C	A	1.213e^-4	0.807	DOWNSTREAM sNPF & 1 other INTERGENIC
2L	667600	2L_667600_SNP [dm3] 2L_667600_SNP [dm6]	G	T	1.225e^-4	0.807	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1419616	3L_1419616_SNP [dm3] 3L_1419616_SNP [dm6]	A	G	1.236e^-4	0.807	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6740800	2R_6740800_SNP [dm3] 2R_10853295_SNP [dm6]	T	C	1.244e^-4	0.807	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	1.246e^-4	0.807	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	899773	3L_899773_SNP [dm3] 3L_899773_SNP [dm6]	C	G	1.258e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16133794	2R_16133794_SNP [dm3] 2R_20246289_SNP [dm6]	C	T	1.262e^-4	0.807	UPSTREAM CG11208 INTRON ppk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18003332	2R_18003332_SNP [dm3] 2R_22115827_SNP [dm6]	G	A	1.263e^-4	0.807	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
3R	23883088	3R_23883088_SNP [dm3] 3R_28057366_SNP [dm6]	A	G	1.263e^-4	0.807	INTRON CG34362
2L	18292236	2L_18292236_SNP [dm3] 2L_18292236_SNP [dm6]	C	T	1.265e^-4	0.807	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
X	11848059	X_11848059_SNP [dm3] X_11954026_SNP [dm6]	A	C	1.271e^-4	0.807	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12537525	2L_12537525_SNP [dm3] 2L_12537525_SNP [dm6]	G	C	1.274e^-4	0.807	INTRON bun
3L	13894366	3L_13894366_SNP [dm3] 3L_13901266_SNP [dm6]	A	T	1.281e^-4	0.807	INTRON dysc
2L	1917355	2L_1917355_SNP [dm3] 2L_1917355_SNP [dm6]	A	G	1.293e^-4	0.807	INTRON CG7337
2L	1892473	2L_1892473_SNP [dm3] 2L_1892473_SNP [dm6]	T	A	1.294e^-4	0.807	INTRON CG7337
3L	22386471	3L_22386471_SNP [dm3] 3L_22393371_SNP [dm6]	C	T	1.297e^-4	0.807	INTRON Ten-m
X	20186050	X_20186050_INS [dm3] X_20315023_INS [dm6]	T	TC	1.309e^-4	0.807	INTRON CG1504
3R	20324093	3R_20324093_SNP [dm3] 3R_24498371_SNP [dm6]	G	A	1.314e^-4	0.807	INTERGENIC
2L	18286874	2L_18286874_SNP [dm3] 2L_18286874_SNP [dm6]	C	T	1.315e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26352784	3R_26352784_SNP [dm3] 3R_30527062_SNP [dm6]	G	A	1.316e^-4	0.807	UPSTREAM jdp INTERGENIC
2R	12019564	2R_12019564_SNP [dm3] 2R_16132059_SNP [dm6]	C	T	1.317e^-4	0.807	INTRON spin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20672325	3L_20672325_SNP [dm3] 3L_20679225_SNP [dm6]	G	A	1.317e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18219694	2L_18219694_SNP [dm3] 2L_18219694_SNP [dm6]	T	C	1.321e^-4	0.807	INTRON CG42750
2L	9783859	2L_9783859_SNP [dm3] 2L_9783859_SNP [dm6]	G	C	1.321e^-4	0.807	INTRON IP3K1
2R	17659893	2R_17659893_SNP [dm3] 2R_21772388_SNP [dm6]	G	A	1.326e^-4	0.807	UPSTREAM CG4021 INTERGENIC
2R	13564799	2R_13564799_SNP [dm3] 2R_17677294_SNP [dm6]	T	C	1.330e^-4	0.807	INTRON Sema-1b
3L	16027261	3L_16027261_SNP [dm3] 3L_16034161_SNP [dm6]	A	T	1.334e^-4	0.807	UTR_3_PRIME CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4000179	2L_4000179_SNP [dm3] 2L_4000179_SNP [dm6]	C	A	1.337e^-4	0.807	SYNONYMOUS_CODING CG43797 UPSTREAM CR45344
3R	11307826	3R_11307826_SNP [dm3] 3R_15482104_SNP [dm6]	C	T	1.337e^-4	0.807	NON_SYNONYMOUS_CODING CG14870	TF binding site mE1_TFBS_chinmo
2R	5519895	2R_5519895_SNP [dm3] 2R_9632390_SNP [dm6]	T	G	1.342e^-4	0.807	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	18287895	2L_18287895_SNP [dm3] 2L_18287895_SNP [dm6]	C	A	1.352e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6496839	3R_6496839_SNP [dm3] 3R_10671117_SNP [dm6]	T	G	1.364e^-4	0.807	INTERGENIC
2R	14704754	2R_14704754_SNP [dm3] 2R_18817249_SNP [dm6]	C	T	1.370e^-4	0.807	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16647314	3L_16647314_SNP [dm3] 3L_16654214_SNP [dm6]	T	A	1.371e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	6575561	3R_6575561_SNP [dm3] 3R_10749839_SNP [dm6]	A	G	1.387e^-4	0.807	INTRON TkR86C
3R	21647534	3R_21647534_SNP [dm3] 3R_25821812_SNP [dm6]	T	G	1.387e^-4	0.807	INTERGENIC
2L	18292114	2L_18292114_SNP [dm3] 2L_18292114_SNP [dm6]	C	G	1.402e^-4	0.807	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
3L	2459523	3L_2459523_SNP [dm3] 3L_2459523_SNP [dm6]	C	T	1.408e^-4	0.807	INTRON CG45186
3L	1419602	3L_1419602_SNP [dm3] 3L_1419602_SNP [dm6]	A	G	1.412e^-4	0.807	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20532099	3R_20532099_SNP [dm3] 3R_24706377_SNP [dm6]	C	A	1.419e^-4	0.807	INTRON slo	TF binding site mE1_TFBS_chinmo
3R	8059577	3R_8059577_SNP [dm3] 3R_12233855_SNP [dm6]	A	T	1.423e^-4	0.807	INTRON Cyp313a5
2R	16812608	2R_16812608_INS [dm3] 2R_20925103_INS [dm6]	G	GCGGCAAGTGAGAGT...	1.429e^-4	0.807	INTRON Rx
X	6536210	X_6536210_SNP [dm3] X_6642177_SNP [dm6]	A	T	1.435e^-4	0.807	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16714597	2L_16714597_SNP [dm3] 2L_16714597_SNP [dm6]	G	A	1.437e^-4	0.807	INTRON CG31808
2R	10790841	2R_10790841_SNP [dm3] 2R_14903336_SNP [dm6]	C	T	1.450e^-4	0.807	SYNONYMOUS_CODING CG10249 DOWNSTREAM Cyp317a1
2L	11872173	2L_11872173_SNP [dm3] 2L_11872173_SNP [dm6]	C	T	1.457e^-4	0.807	INTRON Pde1c
3L	16647244	3L_16647244_SNP [dm3] 3L_16654144_SNP [dm6]	G	A	1.461e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	8625473	2L_8625473_SNP [dm3] 2L_8625473_SNP [dm6]	C	T	1.462e^-4	0.807	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9408337	2R_9408337_SNP [dm3] 2R_13520832_SNP [dm6]	C	T	1.464e^-4	0.807	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15202209	2L_15202209_SNP [dm3] 2L_15202209_SNP [dm6]	G	C	1.482e^-4	0.807	UPSTREAM CR43357 & 1 other INTERGENIC
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	1.491e^-4	0.807	INTRON VAChT & 1 other
2L	6117553	2L_6117553_SNP [dm3] 2L_6117553_SNP [dm6]	T	C	1.494e^-4	0.807	UPSTREAM CG31642 INTRON stai
3R	25692194	3R_25692194_SNP [dm3] 3R_29866472_SNP [dm6]	G	C	1.499e^-4	0.807	UPSTREAM Zip99C INTRON Zip99C
2R	14119955	2R_14119955_SNP [dm3] 2R_18232450_SNP [dm6]	T	A	1.503e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	7910501	3R_7910501_SNP [dm3] 3R_12084779_SNP [dm6]	T	A	1.508e^-4	0.807	INTRON CG14741
3R	7760718	3R_7760718_DEL [dm3] 3R_11934996_DEL [dm6]	ACATTTCTCTCAATTA...	A	1.509e^-4	0.807	INTRON Cad87A
3R	14557966	3R_14557966_SNP [dm3] 3R_18732244_SNP [dm6]	T	C	1.525e^-4	0.807	UTR_3_PRIME Cha UPSTREAM CG14302 DOWNSTREAM Mekk1
2L	11504652	2L_11504652_SNP [dm3] 2L_11504652_SNP [dm6]	G	C	1.530e^-4	0.807	INTRON spz4
X	20644953	X_20644953_SNP [dm3] X_20773926_SNP [dm6]	C	A	1.533e^-4	0.807	INTRON shakB
3L	13894536	3L_13894536_SNP [dm3] 3L_13901436_SNP [dm6]	G	A	1.543e^-4	0.807	INTRON dysc
3L	9176776	3L_9176776_SNP [dm3] 3L_9183676_SNP [dm6]	C	A	1.543e^-4	0.807	INTERGENIC
2L	14786845	2L_14786845_SNP [dm3] 2L_14786845_SNP [dm6]	G	C	1.544e^-4	0.807	INTERGENIC
2L	14626614	2L_14626614_INS [dm3] 2L_14626614_INS [dm6]	C	CTC	1.549e^-4	0.807	INTRON osp
2R	3197196	2R_3197196_SNP [dm3] 2R_7309691_SNP [dm6]	T	C	1.550e^-4	0.807	INTERGENIC
2R	8207465	2R_8207465_SNP [dm3] 2R_12319960_SNP [dm6]	G	C	1.560e^-4	0.807	DOWNSTREAM CR44316 INTERGENIC
3L	8453256	3L_8453256_SNP [dm3] 3L_8460156_SNP [dm6]	T	C	1.561e^-4	0.807	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	12017774	2R_12017774_SNP [dm3] 2R_16130269_SNP [dm6]	C	T	1.582e^-4	0.807	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13622874	X_13622874_SNP [dm3] X_13728841_SNP [dm6]	T	A	1.589e^-4	0.807	INTRON g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	953615	2L_953615_SNP [dm3] 2L_953615_SNP [dm6]	G	T	1.592e^-4	0.807	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9442577	X_9442577_SNP [dm3] X_9548544_SNP [dm6]	A	T	1.594e^-4	0.807	INTRON CG32700
3L	13894418	3L_13894418_SNP [dm3] 3L_13901318_SNP [dm6]	G	A	1.597e^-4	0.807	INTRON dysc
3R	15569341	3R_15569341_SNP [dm3] 3R_19743619_SNP [dm6]	T	G	1.597e^-4	0.807	DOWNSTREAM CR43488 INTRON GluClalpha
3L	14314115	3L_14314115_SNP [dm3] 3L_14321015_SNP [dm6]	G	A	1.599e^-4	0.807	INTRON fz
2R	15832107	2R_15832107_SNP [dm3] 2R_19944602_SNP [dm6]	T	A	1.602e^-4	0.807	SYNONYMOUS_CODING CG43195 DOWNSTREAM CG42690
3R	7910496	3R_7910496_SNP [dm3] 3R_12084774_SNP [dm6]	G	A	1.617e^-4	0.807	INTRON CG14741
3R	26247933	3R_26247933_SNP [dm3] 3R_30422211_SNP [dm6]	G	T	1.621e^-4	0.807	SYNONYMOUS_CODING CG2217 UTR_5_PRIME CG42740 DOWNSTREAM CG15535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13932678	X_13932678_SNP [dm3] X_14038645_SNP [dm6]	T	A	1.623e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2L	18352260	2L_18352260_DEL [dm3] 2L_18352260_DEL [dm6]	TT	A	1.624e^-4	0.807	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
X	5306086	X_5306086_SNP [dm3] X_5412053_SNP [dm6]	A	G	1.625e^-4	0.807	DOWNSTREAM spoon INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17696346	3R_17696346_SNP [dm3] 3R_21870624_SNP [dm6]	C	T	1.634e^-4	0.807	UPSTREAM CG31431 INTERGENIC
2R	18176647	2R_18176647_SNP [dm3] 2R_22289142_SNP [dm6]	A	G	1.636e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9393495	2L_9393495_DEL [dm3] 2L_9393495_DEL [dm6]	AA	A	1.642e^-4	0.807	INTRON Shawl
3L	9961943	3L_9961943_SNP [dm3] 3L_9968843_SNP [dm6]	G	T	1.644e^-4	0.807	UTR_5_PRIME Nc UPSTREAM CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13397258	2L_13397258_SNP [dm3] 2L_13397258_SNP [dm6]	A	G	1.648e^-4	0.807	SYNONYMOUS_CODING CG10859	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10185921	X_10185921_SNP [dm3] X_10291888_SNP [dm6]	T	C	1.653e^-4	0.807	INTRON alpha-Man-I
2L	7517895	2L_7517895_SNP [dm3] 2L_7517895_SNP [dm6]	C	T	1.655e^-4	0.807	INTRON RapGAP1	TF binding site mE1_TFBS_chinmo
2R	10415712	2R_10415712_SNP [dm3] 2R_14528207_SNP [dm6]	T	G	1.658e^-4	0.807	INTRON ttv
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	1.658e^-4	0.807	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9086856	3L_9086856_SNP [dm3] 3L_9093756_SNP [dm6]	A	T	1.659e^-4	0.807	INTRON CG32032
2R	18004448	2R_18004448_SNP [dm3] 2R_22116943_SNP [dm6]	T	A	1.664e^-4	0.807	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	10979548	X_10979548_DEL [dm3] X_11085515_DEL [dm6]	CGCAAGTTCAGCAAAA...	C	1.667e^-4	0.807	INTRON sev
2L	18302678	2L_18302678_SNP [dm3] 2L_18302678_SNP [dm6]	T	C	1.668e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	18316805	2L_18316805_SNP [dm3] 2L_18316805_SNP [dm6]	T	C	1.669e^-4	0.807	INTERGENIC
2L	10656571	2L_10656571_SNP [dm3] 2L_10656571_SNP [dm6]	A	G	1.671e^-4	0.807	INTERGENIC
2L	13728659	2L_13728659_SNP [dm3] 2L_13728659_SNP [dm6]	T	C	1.676e^-4	0.807	INTERGENIC
3L	1469712	3L_1469712_SNP [dm3] 3L_1469712_SNP [dm6]	G	C	1.684e^-4	0.807	DOWNSTREAM rho INTRON Ptp61F
2R	8207748	2R_8207748_SNP [dm3] 2R_12320243_SNP [dm6]	C	T	1.685e^-4	0.807	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
3L	4315310	3L_4315310_SNP [dm3] 3L_4315310_SNP [dm6]	C	A	1.686e^-4	0.807	SYNONYMOUS_CODING Claspin
2R	10415700	2R_10415700_INS [dm3] 2R_14528195_INS [dm6]	T	TT	1.699e^-4	0.807	INTRON ttv
X	21441926	X_21441926_SNP [dm3] X_21570899_SNP [dm6]	T	A	1.699e^-4	0.807	INTERGENIC
2L	954274	2L_954274_SNP [dm3] 2L_954274_SNP [dm6]	A	C	1.700e^-4	0.807	INTRON CG4341
2L	800864	2L_800864_SNP [dm3] 2L_800864_SNP [dm6]	T	C	1.701e^-4	0.807	DOWNSTREAM CR45259 INTERGENIC
2L	16433766	2L_16433766_SNP [dm3] 2L_16433766_SNP [dm6]	G	A	1.705e^-4	0.807	INTRON CG5888
2R	3646532	2R_3646532_SNP [dm3] 2R_7759027_SNP [dm6]	G	T	1.707e^-4	0.807	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
3L	2721519	3L_2721519_SNP [dm3] 3L_2721519_SNP [dm6]	G	C	1.710e^-4	0.807	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_chinmo
X	21011267	X_21011267_SNP [dm3] X_21140240_SNP [dm6]	T	A	1.712e^-4	0.807	UTR_3_PRIME CG34120
3R	22805847	3R_22805847_SNP [dm3] 3R_26980125_SNP [dm6]	T	A	1.722e^-4	0.807	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
2R	6758025	2R_6758025_SNP [dm3] 2R_10870520_SNP [dm6]	A	C	1.729e^-4	0.807	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8329830	3L_8329830_SNP [dm3] 3L_8336730_SNP [dm6]	A	C	1.743e^-4	0.807	UTR_5_PRIME Cpr66Cb
3L	16647335	3L_16647335_SNP [dm3] 3L_16654235_SNP [dm6]	A	C	1.746e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	14119803	2R_14119803_SNP [dm3] 2R_18232298_SNP [dm6]	C	T	1.750e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14997253	3L_14997253_SNP [dm3] 3L_15004153_SNP [dm6]	T	C	1.754e^-4	0.807	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10010517	2R_10010517_SNP [dm3] 2R_14123012_SNP [dm6]	G	A	1.759e^-4	0.807	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18430465	2L_18430465_SNP [dm3] 2L_18430465_SNP [dm6]	C	T	1.759e^-4	0.807	INTERGENIC
2L	12364152	2L_12364152_SNP [dm3] 2L_12364152_SNP [dm6]	T	G	1.762e^-4	0.807	INTRON bru-2
3L	8447887	3L_8447887_SNP [dm3] 3L_8454787_SNP [dm6]	A	G	1.763e^-4	0.807	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12459195	2R_12459195_SNP [dm3] 2R_16571690_SNP [dm6]	T	A	1.775e^-4	0.807	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	12769012	X_12769012_SNP [dm3] X_12874979_SNP [dm6]	A	C	1.776e^-4	0.807	INTRON Pde9
X	21426970	X_21426970_SNP [dm3] X_21555943_SNP [dm6]	T	C	1.785e^-4	0.807	INTERGENIC	transposable element FlyBase
3R	26419307	3R_26419307_SNP [dm3] 3R_30593585_SNP [dm6]	C	T	1.788e^-4	0.807	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22854907	3L_22854907_DEL [dm3] 3L_22861807_DEL [dm6]	GATCAATG	G	1.797e^-4	0.807	DOWNSTREAM CG13239 INTERGENIC
X	21435393	X_21435393_SNP [dm3] X_21564366_SNP [dm6]	T	A	1.801e^-4	0.807	INTERGENIC
X	1931005	X_1931005_SNP [dm3] X_2036972_SNP [dm6]	T	C	1.802e^-4	0.807	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10661699	2L_10661699_SNP [dm3] 2L_10661699_SNP [dm6]	C	T	1.811e^-4	0.807	UPSTREAM CG31871 INTERGENIC
2L	15758680	2L_15758680_SNP [dm3] 2L_15758680_SNP [dm6]	G	A	1.819e^-4	0.807	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26329568	3R_26329568_INS [dm3] 3R_30503846_INS [dm6]	C	CAATAGC	1.819e^-4	0.807	UPSTREAM CG31371 INTRON PH4alphaSG1
2L	18298074	2L_18298074_SNP [dm3] 2L_18298074_SNP [dm6]	C	G	1.822e^-4	0.807	DOWNSTREAM CG5790 INTERGENIC
2L	13106494	2L_13106494_SNP [dm3] 2L_13106494_SNP [dm6]	A	T	1.825e^-4	0.807	UPSTREAM CG5142 INTERGENIC
2R	14119907	2R_14119907_SNP [dm3] 2R_18232402_SNP [dm6]	T	C	1.827e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11963945	2L_11963945_INS [dm3] 2L_11963945_INS [dm6]	C	CGGC	1.828e^-4	0.807	INTRON CR43314
3R	9147192	3R_9147192_SNP [dm3] 3R_13321470_SNP [dm6]	G	C	1.839e^-4	0.807	INTERGENIC
3L	11100840	3L_11100840_SNP [dm3] 3L_11107740_SNP [dm6]	C	G	1.846e^-4	0.807	UPSTREAM CG12522 & 1 other INTERGENIC
2L	18302714	2L_18302714_SNP [dm3] 2L_18302714_SNP [dm6]	T	G	1.847e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8316866	3L_8316866_MNP [dm3] 3L_8323766_MNP [dm6]	ACT	TAA	1.848e^-4	0.807	INTERGENIC
2R	18120042	2R_18120042_SNP [dm3] 2R_22232537_SNP [dm6]	T	C	1.848e^-4	0.807	INTERGENIC
2R	8732568	2R_8732568_SNP [dm3] 2R_12845063_SNP [dm6]	G	T	1.850e^-4	0.807	DOWNSTREAM CG17575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12364157	2L_12364157_SNP [dm3] 2L_12364157_SNP [dm6]	A	G	1.858e^-4	0.807	INTRON bru-2
3R	26246640	3R_26246640_SNP [dm3] 3R_30420918_SNP [dm6]	G	T	1.866e^-4	0.807	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	15296387	2L_15296387_SNP [dm3] 2L_15296387_SNP [dm6]	G	A	1.869e^-4	0.807	EXON CR43764
3L	11339594	3L_11339594_SNP [dm3] 3L_11346494_SNP [dm6]	C	G	1.876e^-4	0.807	INTERGENIC
3R	19603972	3R_19603972_INS [dm3] 3R_23778250_INS [dm6]	A	ATGAGAGCA	1.881e^-4	0.807	INTRON Nup98-96
X	8535778	X_8535778_INS [dm3] X_8641745_INS [dm6]	T	TTGTAT	1.882e^-4	0.807	INTRON oc
3R	5417100	3R_5417100_SNP [dm3] 3R_9591378_SNP [dm6]	G	A	1.884e^-4	0.807	UTR_5_PRIME CG8312 UPSTREAM CG8312 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1419624	3L_1419624_SNP [dm3] 3L_1419624_SNP [dm6]	C	T	1.888e^-4	0.807	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17618570	3R_17618570_SNP [dm3] 3R_21792848_SNP [dm6]	A	G	1.897e^-4	0.807	INTRON CASK	TF binding site mE1_TFBS_cad
3R	26246629	3R_26246629_DEL [dm3] 3R_30420907_DEL [dm6]	TT	T	1.898e^-4	0.807	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	26246649	3R_26246649_SNP [dm3] 3R_30420927_SNP [dm6]	T	C	1.898e^-4	0.807	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	7664048	2R_7664048_SNP [dm3] 2R_11776543_SNP [dm6]	A	G	1.921e^-4	0.807	INTRON ths	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22807596	3R_22807596_SNP [dm3] 3R_26981874_SNP [dm6]	G	A	1.923e^-4	0.807	INTRON CG14253
3R	8060390	3R_8060390_SNP [dm3] 3R_12234668_SNP [dm6]	A	T	1.923e^-4	0.807	UTR_5_PRIME Cyp313a5 DOWNSTREAM Cyp313a2
2R	3641035	2R_3641035_SNP [dm3] 2R_7753530_SNP [dm6]	G	A	1.928e^-4	0.807	INTRON CG30497 & 1 other
X	8577473	X_8577473_SNP [dm3] X_8683440_SNP [dm6]	A	G	1.934e^-4	0.807	INTRON CG11284	TF binding site mE1_TFBS_sens
3L	4028567	3L_4028567_SNP [dm3] 3L_4028567_SNP [dm6]	T	C	1.935e^-4	0.807	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16647266	3L_16647266_SNP [dm3] 3L_16654166_SNP [dm6]	C	A	1.936e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	14119939	2R_14119939_SNP [dm3] 2R_18232434_SNP [dm6]	C	A	1.940e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14405273	X_14405273_SNP [dm3] X_14511240_SNP [dm6]	T	A	1.948e^-4	0.807	INTERGENIC
2L	14937652	2L_14937652_SNP [dm3] 2L_14937652_SNP [dm6]	C	T	1.963e^-4	0.807	INTRON CG42313
2L	5570845	2L_5570845_SNP [dm3] 2L_5570845_SNP [dm6]	C	T	1.971e^-4	0.807	INTERGENIC
2R	12643087	2R_12643087_SNP [dm3] 2R_16755582_SNP [dm6]	T	C	1.990e^-4	0.807	SYNONYMOUS_CODING CG5267 DOWNSTREAM CG34189 INTRON unc-104	TF binding site mE1_TFBS_chinmo
3L	17925233	3L_17925233_SNP [dm3] 3L_17932133_SNP [dm6]	C	T	1.996e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17895987	2L_17895987_SNP [dm3] 2L_17895987_SNP [dm6]	C	T	1.998e^-4	0.807	INTERGENIC
2L	11799808	2L_11799808_SNP [dm3] 2L_11799808_SNP [dm6]	T	C	2.001e^-4	0.807	INTRON crol
3R	23388963	3R_23388963_INS [dm3] 3R_27563241_INS [dm6]	A	ATGA	2.004e^-4	0.807	UTR_3_PRIME wdb
3R	5737849	3R_5737849_SNP [dm3] 3R_9912127_SNP [dm6]	T	G	2.006e^-4	0.807	INTRON Glut4EF
3L	6005059	3L_6005059_SNP [dm3] 3L_6011959_SNP [dm6]	T	C	2.019e^-4	0.807	UPSTREAM alphaKap4 INTRON PVRAP	insulator Insulator_Class_II.mE01
2L	20358214	2L_20358214_SNP [dm3] 2L_20358214_SNP [dm6]	T	C	2.020e^-4	0.807	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
2L	953002	2L_953002_SNP [dm3] 2L_953002_SNP [dm6]	G	T	2.026e^-4	0.807	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15506804	3L_15506804_SNP [dm3] 3L_15513704_SNP [dm6]	C	T	2.028e^-4	0.807	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs
X	6201835	X_6201835_SNP [dm3] X_6307802_SNP [dm6]	G	T	2.038e^-4	0.807	INTERGENIC
3L	6001607	3L_6001607_SNP [dm3] 3L_6008507_SNP [dm6]	T	C	2.047e^-4	0.807	DOWNSTREAM alphaKap4 INTRON PVRAP
2L	18300912	2L_18300912_SNP [dm3] 2L_18300912_SNP [dm6]	T	C	2.049e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_sens
2L	19526340	2L_19526340_SNP [dm3] 2L_19526340_SNP [dm6]	G	T	2.051e^-4	0.807	UTR_5_PRIME CG10166 UPSTREAM CG10137 DOWNSTREAM CG10132 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	5805604	X_5805604_SNP [dm3] X_5911571_SNP [dm6]	G	A	2.054e^-4	0.807	UTR_3_PRIME CG12236 INTRON CG12236
2L	17083596	2L_17083596_SNP [dm3] 2L_17083596_SNP [dm6]	A	G	2.072e^-4	0.807	INTERGENIC
2L	18294949	2L_18294949_SNP [dm3] 2L_18294949_SNP [dm6]	A	C	2.075e^-4	0.807	UTR_5_PRIME CG5790 UPSTREAM CR43358
2L	15779226	2L_15779226_SNP [dm3] 2L_15779226_SNP [dm6]	A	C	2.081e^-4	0.807	INTERGENIC
2R	10378828	2R_10378828_SNP [dm3] 2R_14491323_SNP [dm6]	G	C	2.084e^-4	0.807	INTRON L
2R	6669197	2R_6669197_SNP [dm3] 2R_10781692_SNP [dm6]	C	A	2.106e^-4	0.807	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19194434	2L_19194434_SNP [dm3] 2L_19194434_SNP [dm6]	C	A	2.108e^-4	0.807	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	18291701	2L_18291701_SNP [dm3] 2L_18291701_SNP [dm6]	T	G	2.112e^-4	0.807	UPSTREAM CR44696 & 2 others EXON CR44693
3L	16669767	3L_16669767_DEL [dm3] 3L_16676667_DEL [dm6]	ATA	A	2.116e^-4	0.807	UTR_3_PRIME Lasp DOWNSTREAM CG13032 & 2 others
3R	27068204	3R_27068204_SNP [dm3] 3R_31242482_SNP [dm6]	T	C	2.130e^-4	0.807	INTRON qless
2R	12878205	2R_12878205_SNP [dm3] 2R_16990700_SNP [dm6]	G	A	2.130e^-4	0.807	INTRON Cbp53E
2R	17136015	2R_17136015_SNP [dm3] 2R_21248510_SNP [dm6]	A	T	2.131e^-4	0.807	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18302683	2L_18302683_SNP [dm3] 2L_18302683_SNP [dm6]	G	C	2.135e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	12459508	2R_12459508_SNP [dm3] 2R_16572003_SNP [dm6]	T	C	2.139e^-4	0.807	UPSTREAM CG4927 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	22684852	3R_22684852_SNP [dm3] 3R_26859130_SNP [dm6]	C	T	2.142e^-4	0.807	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	6117549	2L_6117549_SNP [dm3] 2L_6117549_SNP [dm6]	A	T	2.142e^-4	0.807	UPSTREAM CG31642 INTRON stai
2L	4906688	2L_4906688_SNP [dm3] 2L_4906688_SNP [dm6]	A	T	2.143e^-4	0.807	UTR_5_PRIME CG2837 INTRON CG2837
2L	10312870	2L_10312870_SNP [dm3] 2L_10312870_SNP [dm6]	T	C	2.146e^-4	0.807	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18301140	2L_18301140_SNP [dm3] 2L_18301140_SNP [dm6]	T	G	2.150e^-4	0.807	INTERGENIC
2L	12279654	2L_12279654_SNP [dm3] 2L_12279654_SNP [dm6]	T	C	2.150e^-4	0.807	INTRON aret
2L	8667007	2L_8667007_SNP [dm3] 2L_8667007_SNP [dm6]	A	T	2.161e^-4	0.807	UTR_3_PRIME Sema-1a	TF binding site mE1_TFBS_cad
X	5690379	X_5690379_INS [dm3] X_5796346_INS [dm6]	T	TCTAAATT	2.163e^-4	0.807	INTERGENIC
X	13909328	X_13909328_DEL [dm3] X_14015295_DEL [dm6]	CC	C	2.169e^-4	0.807	UPSTREAM tRNA:S4:12Eb & 1 other DOWNSTREAM tRNA:R:12Ee & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9642403	2L_9642403_SNP [dm3] 2L_9642403_SNP [dm6]	T	C	2.170e^-4	0.807	SYNONYMOUS_CODING Apoltp
2R	3641252	2R_3641252_SNP [dm3] 2R_7753747_SNP [dm6]	C	A	2.176e^-4	0.807	INTRON CG30497 & 1 other
3L	11174988	3L_11174988_SNP [dm3] 3L_11181888_SNP [dm6]	T	G	2.182e^-4	0.807	INTRON GlcAT-P
3R	26241165	3R_26241165_SNP [dm3] 3R_30415443_SNP [dm6]	G	T	2.193e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12583786	2L_12583786_SNP [dm3] 2L_12583786_SNP [dm6]	T	A	2.198e^-4	0.807	DOWNSTREAM CR44596 & 1 other INTERGENIC
2R	8870097	2R_8870097_SNP [dm3] 2R_12982592_SNP [dm6]	A	C	2.198e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13629474	2L_13629474_SNP [dm3] 2L_13629474_SNP [dm6]	G	T	2.199e^-4	0.807	INTRON kuz
X	12991368	X_12991368_SNP [dm3] X_13097335_SNP [dm6]	G	C	2.205e^-4	0.807	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	21426188	X_21426188_SNP [dm3] X_21555161_SNP [dm6]	A	G	2.205e^-4	0.807	INTERGENIC	transposable element FlyBase
2L	12601154	2L_12601154_SNP [dm3] 2L_12601154_SNP [dm6]	T	C	2.208e^-4	0.807	INTRON nub	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4674747	2L_4674747_SNP [dm3] 2L_4674747_SNP [dm6]	T	C	2.210e^-4	0.807	INTERGENIC
3L	2401775	3L_2401775_SNP [dm3] 3L_2401775_SNP [dm6]	A	C	2.215e^-4	0.807	INTRON CG45186
2R	19295326	2R_19295326_SNP [dm3] 2R_23407803_SNP [dm6]	G	A	2.215e^-4	0.807	INTERGENIC
2R	12638620	2R_12638620_SNP [dm3] 2R_16751115_SNP [dm6]	T	C	2.219e^-4	0.807	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2R	15430859	2R_15430859_SNP [dm3] 2R_19543354_SNP [dm6]	G	C	2.223e^-4	0.807	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	512260	3L_512260_SNP [dm3] 3L_512260_SNP [dm6]	C	G	2.223e^-4	0.807	INTRON klar
2L	7250033	2L_7250033_SNP [dm3] 2L_7250033_SNP [dm6]	G	T	2.234e^-4	0.807	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	4666619	X_4666619_SNP [dm3] X_4772586_SNP [dm6]	T	G	2.236e^-4	0.807	UPSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	801777	2L_801777_SNP [dm3] 2L_801777_SNP [dm6]	G	A	2.243e^-4	0.807	INTERGENIC
3R	24013319	3R_24013319_SNP [dm3] 3R_28187597_SNP [dm6]	T	A	2.244e^-4	0.807	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7543021	2R_7543021_SNP [dm3] 2R_11655516_SNP [dm6]	T	A	2.245e^-4	0.807	INTRON Roc2 & 1 other
2R	15166620	2R_15166620_SNP [dm3] 2R_19279115_SNP [dm6]	C	T	2.245e^-4	0.807	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25692212	3R_25692212_SNP [dm3] 3R_29866490_SNP [dm6]	A	T	2.246e^-4	0.807	UPSTREAM Zip99C INTRON Zip99C
X	21277140	X_21277140_SNP [dm3] X_21406113_SNP [dm6]	A	G	2.248e^-4	0.807	INTERGENIC
3R	20839763	3R_20839763_SNP [dm3] 3R_25014041_SNP [dm6]	G	T	2.263e^-4	0.807	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15237186	2L_15237186_SNP [dm3] 2L_15237186_SNP [dm6]	C	T	2.264e^-4	0.807	INTRON ZnT35C
2R	9278953	2R_9278953_SNP [dm3] 2R_13391448_SNP [dm6]	G	T	2.264e^-4	0.807	SYNONYMOUS_CODING CG43691
2R	12390109	2R_12390109_SNP [dm3] 2R_16502604_SNP [dm6]	A	G	2.269e^-4	0.807	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10656369	2L_10656369_SNP [dm3] 2L_10656369_SNP [dm6]	T	G	2.269e^-4	0.807	INTERGENIC
2L	14513741	2L_14513741_SNP [dm3] 2L_14513741_SNP [dm6]	T	A	2.272e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16647228	3L_16647228_INS [dm3] 3L_16654128_INS [dm6]	T	TGCAAGGATCTG...	2.274e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	1941877	X_1941877_SNP [dm3] X_2047844_SNP [dm6]	T	C	2.280e^-4	0.807	INTRON CG4313 & 1 other
2R	8497570	2R_8497570_DEL [dm3] 2R_12610065_DEL [dm6]	TT	T	2.280e^-4	0.807	INTRON Amph	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14119947	2R_14119947_SNP [dm3] 2R_18232442_SNP [dm6]	G	C	2.292e^-4	0.807	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15212766	2L_15212766_SNP [dm3] 2L_15212766_SNP [dm6]	C	G	2.292e^-4	0.807	INTERGENIC
2R	7958162	2R_7958162_SNP [dm3] 2R_12070657_SNP [dm6]	C	T	2.303e^-4	0.807	INTRON CG8888
3L	5435772	3L_5435772_SNP [dm3] 3L_5442672_SNP [dm6]	A	G	2.310e^-4	0.807	DOWNSTREAM CG34391 INTERGENIC
3R	3776302	3R_3776302_SNP [dm3] 3R_7950580_SNP [dm6]	G	C	2.313e^-4	0.807	INTRON dsx
3L	10655312	3L_10655312_SNP [dm3] 3L_10662212_SNP [dm6]	G	A	2.325e^-4	0.807	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6765943	3L_6765943_SNP [dm3] 3L_6772843_SNP [dm6]	C	A	2.326e^-4	0.807	INTERGENIC
2L	1889870	2L_1889870_SNP [dm3] 2L_1889870_SNP [dm6]	C	T	2.328e^-4	0.807	INTRON CG7337
3R	24013401	3R_24013401_SNP [dm3] 3R_28187679_SNP [dm6]	G	C	2.329e^-4	0.807	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11341793	3L_11341793_SNP [dm3] 3L_11348693_SNP [dm6]	A	G	2.331e^-4	0.807	DOWNSTREAM CR45251 INTERGENIC
2L	22700251	2L_22700251_SNP [dm3] 2L_22807519_SNP [dm6]	C	T	2.331e^-4	0.807	INTERGENIC
2L	11482203	2L_11482203_SNP [dm3] 2L_11482203_SNP [dm6]	C	T	2.334e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1136493	2L_1136493_SNP [dm3] 2L_1136493_SNP [dm6]	T	A	2.340e^-4	0.807	INTRON CG4577
3L	8880918	3L_8880918_SNP [dm3] 3L_8887818_SNP [dm6]	C	T	2.351e^-4	0.807	DOWNSTREAM CG43169 INTRON dally
X	13514778	X_13514778_SNP [dm3] X_13620745_SNP [dm6]	G	A	2.353e^-4	0.807	SYNONYMOUS_CODING CG2691
X	12991247	X_12991247_SNP [dm3] X_13097214_SNP [dm6]	A	C	2.356e^-4	0.807	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	17894673	2L_17894673_SNP [dm3] 2L_17894673_SNP [dm6]	T	A	2.358e^-4	0.807	EXON CR43420
2L	18373578	2L_18373578_SNP [dm3] 2L_18373578_SNP [dm6]	T	G	2.362e^-4	0.807	INTRON Fas3
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	2.363e^-4	0.807	INTRON Cad87A
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	2.366e^-4	0.807	UTR_3_PRIME ACXA UPSTREAM ACXE
3R	19292231	3R_19292231_SNP [dm3] 3R_23466509_SNP [dm6]	C	T	2.371e^-4	0.807	INTRON CG4374
3R	15569738	3R_15569738_SNP [dm3] 3R_19744016_SNP [dm6]	C	G	2.372e^-4	0.807	INTRON GluClalpha EXON CR43488
2L	17361511	2L_17361511_SNP [dm3] 2L_17361511_SNP [dm6]	C	T	2.378e^-4	0.807	EXON CR44346
2L	10592226	2L_10592226_SNP [dm3] 2L_10592226_SNP [dm6]	A	G	2.381e^-4	0.807	INTRON Trim9
3R	15186199	3R_15186199_SNP [dm3] 3R_19360477_SNP [dm6]	C	A	2.385e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	2.386e^-4	0.807	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
3R	5781443	3R_5781443_SNP [dm3] 3R_9955721_SNP [dm6]	C	T	2.387e^-4	0.807	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	14456068	2L_14456068_SNP [dm3] 2L_14456068_SNP [dm6]	T	G	2.389e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	23893927	3R_23893927_SNP [dm3] 3R_28068205_SNP [dm6]	T	A	2.391e^-4	0.807	INTRON CG34362
X	1937706	X_1937706_SNP [dm3] X_2043673_SNP [dm6]	C	G	2.395e^-4	0.807	NON_SYNONYMOUS_CODING CG4325 DOWNSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	18819203	3L_18819203_SNP [dm3] 3L_18826103_SNP [dm6]	C	G	2.409e^-4	0.807	INTRON Cat
3R	9119626	3R_9119626_SNP [dm3] 3R_13293904_SNP [dm6]	T	C	2.413e^-4	0.807	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	1936590	X_1936590_SNP [dm3] X_2042557_SNP [dm6]	G	T	2.420e^-4	0.807	UPSTREAM Actn & 1 other DOWNSTREAM CG4325 INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16677054	3L_16677054_SNP [dm3] 3L_16683954_SNP [dm6]	T	C	2.424e^-4	0.807	INTRON Lasp & 1 other
2L	9036476	2L_9036476_SNP [dm3] 2L_9036476_SNP [dm6]	G	A	2.424e^-4	0.807	INTERGENIC
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	2.431e^-4	0.807	INTRON CG8563
2R	15830952	2R_15830952_SNP [dm3] 2R_19943447_SNP [dm6]	C	A	2.432e^-4	0.807	DOWNSTREAM CG43195 INTERGENIC
3L	9865121	3L_9865121_SNP [dm3] 3L_9872021_SNP [dm6]	C	T	2.448e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_D
2L	9180473	2L_9180473_SNP [dm3] 2L_9180473_SNP [dm6]	A	C	2.457e^-4	0.807	INTRON tai
3R	26301345	3R_26301345_SNP [dm3] 3R_30475623_SNP [dm6]	G	A	2.461e^-4	0.807	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26352848	3R_26352848_SNP [dm3] 3R_30527126_SNP [dm6]	G	C	2.463e^-4	0.807	UPSTREAM jdp INTERGENIC
2L	17484562	2L_17484562_DEL [dm3] 2L_17484562_DEL [dm6]	TAGAG	T	2.464e^-4	0.807	UTR_5_PRIME CG5131 UPSTREAM CG6453	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15504913	3L_15504913_SNP [dm3] 3L_15511813_SNP [dm6]	A	C	2.465e^-4	0.807	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13301608	3L_13301608_SNP [dm3] 3L_13308508_SNP [dm6]	T	A	2.465e^-4	0.807	INTERGENIC
2L	18311834	2L_18311834_SNP [dm3] 2L_18311834_SNP [dm6]	G	A	2.466e^-4	0.807	DOWNSTREAM CR45721 INTERGENIC
3L	16027267	3L_16027267_SNP [dm3] 3L_16034167_SNP [dm6]	G	A	2.471e^-4	0.807	UTR_3_PRIME CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18302218	3R_18302218_SNP [dm3] 3R_22476496_SNP [dm6]	G	A	2.472e^-4	0.807	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5691285	X_5691285_SNP [dm3] X_5797252_SNP [dm6]	A	G	2.473e^-4	0.807	INTERGENIC
2R	15830354	2R_15830354_DEL [dm3] 2R_19942849_DEL [dm6]	CAATTCACGCTGTTTG...	C	2.473e^-4	0.807	INTERGENIC
X	18390139	X_18390139_SNP [dm3] X_18496106_SNP [dm6]	G	A	2.482e^-4	0.807	UTR_3_PRIME GalNAc-T2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6674120	2R_6674120_SNP [dm3] 2R_10786615_SNP [dm6]	G	C	2.485e^-4	0.807	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18280815	2L_18280815_SNP [dm3] 2L_18280815_SNP [dm6]	C	T	2.489e^-4	0.807	INTERGENIC
2L	11551639	2L_11551639_SNP [dm3] 2L_11551639_SNP [dm6]	T	C	2.502e^-4	0.807	INTERGENIC
X	16785917	X_16785917_SNP [dm3] X_16891884_SNP [dm6]	A	C	2.504e^-4	0.807	INTERGENIC
2L	14680261	2L_14680261_SNP [dm3] 2L_14680261_SNP [dm6]	C	T	2.506e^-4	0.807	INTRON osp
3L	13301556	3L_13301556_SNP [dm3] 3L_13308456_SNP [dm6]	T	G	2.510e^-4	0.807	INTERGENIC
3R	26332745	3R_26332745_SNP [dm3] 3R_30507023_SNP [dm6]	G	A	2.516e^-4	0.807	SPLICE_SITE_REGION CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908 INTRON CG15539
3L	6005082	3L_6005082_SNP [dm3] 3L_6011982_SNP [dm6]	T	C	2.520e^-4	0.807	UPSTREAM alphaKap4 INTRON PVRAP
X	13622870	X_13622870_SNP [dm3] X_13728837_SNP [dm6]	G	T	2.523e^-4	0.807	INTRON g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18325611	2L_18325611_INS [dm3] 2L_18325611_INS [dm6]	C	CTTGCT	2.523e^-4	0.807	INTRON Fas3
2L	1340458	2L_1340458_INS [dm3] 2L_1340458_INS [dm6]	T	TCCTTT	2.530e^-4	0.807	DOWNSTREAM CG33923 INTERGENIC
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	2.539e^-4	0.807	INTRON Mhc
2R	12247990	2R_12247990_SNP [dm3] 2R_16360485_SNP [dm6]	C	T	2.546e^-4	0.807	SYNONYMOUS_CODING CG6262 UTR_5_PRIME CG6262 UPSTREAM CR45322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14521535	3R_14521535_SNP [dm3] 3R_18695813_SNP [dm6]	G	A	2.548e^-4	0.807	DOWNSTREAM CG34282 INTERGENIC
2R	12018447	2R_12018447_SNP [dm3] 2R_16130942_SNP [dm6]	T	G	2.558e^-4	0.807	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18234102	3R_18234102_SNP [dm3] 3R_22408380_SNP [dm6]	C	T	2.560e^-4	0.807	SYNONYMOUS_CODING CG13855 DOWNSTREAM CG13850
2L	15212087	2L_15212087_SNP [dm3] 2L_15212087_SNP [dm6]	G	C	2.562e^-4	0.807	INTERGENIC
3L	761879	3L_761879_SNP [dm3] 3L_761879_SNP [dm6]	C	T	2.563e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
3R	23576464	3R_23576464_SNP [dm3] 3R_27750742_SNP [dm6]	A	G	2.567e^-4	0.807	INTERGENIC
2L	19755719	2L_19755719_SNP [dm3] 2L_19755719_SNP [dm6]	C	T	2.572e^-4	0.807	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11058111	2R_11058111_SNP [dm3] 2R_15170606_SNP [dm6]	T	C	2.573e^-4	0.807	INTRON igl	TF binding site mE1_TFBS_sbb
2R	10311924	2R_10311924_SNP [dm3] 2R_14424419_SNP [dm6]	A	T	2.575e^-4	0.807	UTR_3_PRIME CG17386
3L	14976461	3L_14976461_SNP [dm3] 3L_14983361_SNP [dm6]	T	C	2.580e^-4	0.807	SYNONYMOUS_CODING CG5114 DOWNSTREAM CG3349	TF binding site mE1_TFBS_sens
3L	11341758	3L_11341758_SNP [dm3] 3L_11348658_SNP [dm6]	T	A	2.585e^-4	0.807	DOWNSTREAM CR45251 INTERGENIC
X	16785560	X_16785560_SNP [dm3] X_16891527_SNP [dm6]	A	C	2.586e^-4	0.807	DOWNSTREAM CG13002 INTERGENIC
2L	18302676	2L_18302676_SNP [dm3] 2L_18302676_SNP [dm6]	T	A	2.588e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	8884921	X_8884921_SNP [dm3] X_8990888_SNP [dm6]	T	C	2.590e^-4	0.807	INTRON rdgA & 1 other
2L	18525524	2L_18525524_SNP [dm3] 2L_18525524_SNP [dm6]	G	A	2.595e^-4	0.807	INTRON CG10211
3L	12718311	3L_12718311_SNP [dm3] 3L_12725211_SNP [dm6]	A	G	2.596e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18779985	2L_18779985_SNP [dm3] 2L_18779985_SNP [dm6]	G	A	2.602e^-4	0.807	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17722864	3R_17722864_SNP [dm3] 3R_21897142_SNP [dm6]	T	C	2.604e^-4	0.807	INTRON CG6678
2L	5295314	2L_5295314_SNP [dm3] 2L_5295314_SNP [dm6]	C	T	2.611e^-4	0.807	INTRON vri	TF binding site mE1_TFBS_inv
3L	15504976	3L_15504976_SNP [dm3] 3L_15511876_SNP [dm6]	G	A	2.618e^-4	0.807	UPSTREAM Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15505091	3L_15505091_SNP [dm3] 3L_15511991_SNP [dm6]	C	T	2.618e^-4	0.807	START_GAINED Eip71CD UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19226746	2R_19226746_SNP [dm3] 2R_23339223_SNP [dm6]	C	A	2.624e^-4	0.807	INTERGENIC
2L	15775278	2L_15775278_SNP [dm3] 2L_15775278_SNP [dm6]	A	G	2.633e^-4	0.807	INTERGENIC
3L	16647309	3L_16647309_SNP [dm3] 3L_16654209_SNP [dm6]	G	A	2.638e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	17654897	2R_17654897_SNP [dm3] 2R_21767392_SNP [dm6]	C	A	2.643e^-4	0.807	NON_SYNONYMOUS_CODING CG30395
2L	9036478	2L_9036478_SNP [dm3] 2L_9036478_SNP [dm6]	T	G	2.644e^-4	0.807	INTERGENIC
2L	9036480	2L_9036480_SNP [dm3] 2L_9036480_SNP [dm6]	T	G	2.644e^-4	0.807	INTERGENIC
2L	9036482	2L_9036482_SNP [dm3] 2L_9036482_SNP [dm6]	A	T	2.644e^-4	0.807	INTERGENIC
3R	17686165	3R_17686165_SNP [dm3] 3R_21860443_SNP [dm6]	A	T	2.645e^-4	0.807	DOWNSTREAM CR45644 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17124124	2L_17124124_SNP [dm3] 2L_17124124_SNP [dm6]	A	G	2.646e^-4	0.807	INTRON CG31784
2L	13123883	2L_13123883_SNP [dm3] 2L_13123883_SNP [dm6]	C	A	2.658e^-4	0.807	INTERGENIC
3R	15894383	3R_15894383_INS [dm3] 3R_20068661_INS [dm6]	A	AAGA	2.659e^-4	0.807	INTERGENIC
3R	24013415	3R_24013415_SNP [dm3] 3R_28187693_SNP [dm6]	G	A	2.674e^-4	0.807	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12642964	2R_12642964_SNP [dm3] 2R_16755459_SNP [dm6]	G	A	2.681e^-4	0.807	SYNONYMOUS_CODING CG5267 DOWNSTREAM CG34189 INTRON unc-104	TF binding site mE1_TFBS_chinmo
3L	11341756	3L_11341756_SNP [dm3] 3L_11348656_SNP [dm6]	G	T	2.682e^-4	0.807	DOWNSTREAM CR45251 INTERGENIC
3L	1097200	3L_1097200_SNP [dm3] 3L_1097200_SNP [dm6]	G	A	2.686e^-4	0.807	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	22849982	3L_22849982_SNP [dm3] 3L_22856882_SNP [dm6]	G	A	2.690e^-4	0.807	UPSTREAM CG32459 INTERGENIC
2L	10268024	2L_10268024_SNP [dm3] 2L_10268024_SNP [dm6]	G	A	2.692e^-4	0.807	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
X	5905557	X_5905557_DEL [dm3] X_6011524_DEL [dm6]	CATTA	C	2.699e^-4	0.807	INTRON mab-21	TF binding site mE1_TFBS_inv
3R	14175969	3R_14175969_SNP [dm3] 3R_18350247_SNP [dm6]	T	C	2.703e^-4	0.807	INTRON CG15803
3R	24341187	3R_24341187_SNP [dm3] 3R_28515465_SNP [dm6]	G	A	2.703e^-4	0.807	INTRON Dhc98D
3L	16647343	3L_16647343_SNP [dm3] 3L_16654243_SNP [dm6]	T	G	2.708e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	10259719	2L_10259719_SNP [dm3] 2L_10259719_SNP [dm6]	A	G	2.710e^-4	0.807	UTR_5_PRIME Pten INTRON Pten	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_Kr
2R	13297036	2R_13297036_SNP [dm3] 2R_17409531_SNP [dm6]	C	T	2.710e^-4	0.807	SYNONYMOUS_CODING CG30101	TF binding site mE1_TFBS_HSA
X	12824376	X_12824376_SNP [dm3] X_12930343_SNP [dm6]	T	G	2.710e^-4	0.807	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6474795	3R_6474795_SNP [dm3] 3R_10649073_SNP [dm6]	C	A	2.714e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	9656993	3R_9656993_SNP [dm3] 3R_13831271_SNP [dm6]	A	C	2.715e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9298055	2L_9298055_SNP [dm3] 2L_9298055_SNP [dm6]	C	T	2.715e^-4	0.807	UTR_3_PRIME Ggamma30A
2R	10397316	2R_10397316_SNP [dm3] 2R_14509811_SNP [dm6]	C	A	2.715e^-4	0.807	INTRON Asx	TF binding site mE1_TFBS_HSA
3L	16647294	3L_16647294_INS [dm3] 3L_16654194_INS [dm6]	A	ATAAA	2.717e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	10320442	2R_10320442_SNP [dm3] 2R_14432937_SNP [dm6]	T	C	2.717e^-4	0.807	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6466305	3L_6466305_SNP [dm3] 3L_6473205_SNP [dm6]	C	T	2.724e^-4	0.807	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6937595	3L_6937595_SNP [dm3] 3L_6944495_SNP [dm6]	G	T	2.725e^-4	0.807	START_GAINED tow UTR_5_PRIME tow UPSTREAM tow	TF binding site mE1_TFBS_Trl
3R	8366215	3R_8366215_SNP [dm3] 3R_12540493_SNP [dm6]	G	T	2.725e^-4	0.807	INTRON Octbeta3R
X	12133241	X_12133241_SNP [dm3] X_12239208_SNP [dm6]	C	A	2.726e^-4	0.807	INTRON Ten-a
3L	4295794	3L_4295794_SNP [dm3] 3L_4295794_SNP [dm6]	G	A	2.728e^-4	0.807	SYNONYMOUS_CODING dyl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17618700	3R_17618700_SNP [dm3] 3R_21792978_SNP [dm6]	T	A	2.737e^-4	0.807	INTRON CASK	TF binding site mE1_TFBS_cad
X	8939871	X_8939871_SNP [dm3] X_9045838_SNP [dm6]	G	T	2.737e^-4	0.807	INTRON CR43836 & 1 other
2R	7201479	2R_7201479_SNP [dm3] 2R_11313974_SNP [dm6]	T	C	2.742e^-4	0.807	SPLICE_SITE_REGION nompA SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
2L	18287957	2L_18287957_SNP [dm3] 2L_18287957_SNP [dm6]	T	C	2.744e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4313819	3L_4313819_SNP [dm3] 3L_4313819_SNP [dm6]	C	T	2.750e^-4	0.807	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14062278	3R_14062278_SNP [dm3] 3R_18236556_SNP [dm6]	T	C	2.750e^-4	0.807	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2378902	3L_2378902_SNP [dm3] 3L_2378902_SNP [dm6]	A	T	2.754e^-4	0.807	START_GAINED CG45186 UTR_5_PRIME CG45186 INTRON CG45186
3R	6319783	3R_6319783_SNP [dm3] 3R_10494061_SNP [dm6]	G	A	2.755e^-4	0.807	INTERGENIC
2L	14803298	2L_14803298_SNP [dm3] 2L_14803298_SNP [dm6]	A	T	2.764e^-4	0.807	DOWNSTREAM CG33308 INTERGENIC
3L	15504633	3L_15504633_SNP [dm3] 3L_15511533_SNP [dm6]	G	T	2.775e^-4	0.807	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17978728	3R_17978728_SNP [dm3] 3R_22153006_SNP [dm6]	T	G	2.777e^-4	0.807	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
X	21440472	X_21440472_SNP [dm3] X_21569445_SNP [dm6]	G	C	2.777e^-4	0.807	INTERGENIC
2R	14519436	2R_14519436_SNP [dm3] 2R_18631931_SNP [dm6]	T	C	2.781e^-4	0.807	UTR_5_PRIME CG5482 UPSTREAM CG5482 DOWNSTREAM CG30122
2R	18727989	2R_18727989_SNP [dm3] 2R_22840466_SNP [dm6]	A	G	2.782e^-4	0.807	UPSTREAM CG9826 INTERGENIC
2L	18292279	2L_18292279_SNP [dm3] 2L_18292279_SNP [dm6]	T	A	2.786e^-4	0.807	UPSTREAM CG43362 & 1 other DOWNSTREAM CR44693 INTERGENIC
3L	1120650	3L_1120650_SNP [dm3] 3L_1120650_SNP [dm6]	A	G	2.787e^-4	0.807	INTERGENIC
2L	19880526	2L_19880526_SNP [dm3] 2L_19880526_SNP [dm6]	G	A	2.800e^-4	0.807	INTRON sick
X	12768987	X_12768987_SNP [dm3] X_12874954_SNP [dm6]	G	A	2.813e^-4	0.807	INTRON Pde9
X	10284252	X_10284252_INS [dm3] X_10390219_INS [dm6]	T	TGTTATCT	2.816e^-4	0.807	INTRON flw
3R	14175974	3R_14175974_SNP [dm3] 3R_18350252_SNP [dm6]	C	T	2.816e^-4	0.807	INTRON CG15803
3L	3254227	3L_3254227_SNP [dm3] 3L_3254227_SNP [dm6]	C	T	2.822e^-4	0.807	EXON CR43626
2L	18302532	2L_18302532_SNP [dm3] 2L_18302532_SNP [dm6]	T	A	2.828e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	10768274	2R_10768274_SNP [dm3] 2R_14880769_SNP [dm6]	G	T	2.831e^-4	0.807	SYNONYMOUS_CODING Cyp6a9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9413348	2R_9413348_SNP [dm3] 2R_13525843_SNP [dm6]	G	A	2.834e^-4	0.807	NON_SYNONYMOUS_CODING CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	19290176	2R_19290176_SNP [dm3] 2R_23402653_SNP [dm6]	C	T	2.837e^-4	0.807	UPSTREAM CG3520 INTERGENIC
2L	18288961	2L_18288961_SNP [dm3] 2L_18288961_SNP [dm6]	G	A	2.843e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	18302869	2L_18302869_SNP [dm3] 2L_18302869_SNP [dm6]	A	C	2.844e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12462210	2L_12462210_SNP [dm3] 2L_12462210_SNP [dm6]	G	A	2.851e^-4	0.807	UPSTREAM bun INTRON bun	TF binding site mE1_TFBS_D
2R	13171231	2R_13171231_SNP [dm3] 2R_17283726_SNP [dm6]	G	A	2.862e^-4	0.807	INTRON mbl
3L	6765909	3L_6765909_DEL [dm3] 3L_6772809_DEL [dm6]	GG	G	2.864e^-4	0.807	INTERGENIC
3R	26432275	3R_26432275_SNP [dm3] 3R_30606553_SNP [dm6]	A	C	2.868e^-4	0.807	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	17680209	3L_17680209_SNP [dm3] 3L_17687109_SNP [dm6]	G	A	2.871e^-4	0.807	INTERGENIC
3L	16647328	3L_16647328_SNP [dm3] 3L_16654228_SNP [dm6]	T	A	2.878e^-4	0.807	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	11965346	2L_11965346_SNP [dm3] 2L_11965346_SNP [dm6]	G	C	2.879e^-4	0.807	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1919547	2R_1919547_SNP [dm3] 2R_6032042_SNP [dm6]	T	C	2.880e^-4	0.807	INTRON SCAP
2R	12017719	2R_12017719_SNP [dm3] 2R_16130214_SNP [dm6]	C	G	2.881e^-4	0.807	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19194436	2L_19194436_SNP [dm3] 2L_19194436_SNP [dm6]	A	G	2.882e^-4	0.807	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26241242	3R_26241242_SNP [dm3] 3R_30415520_SNP [dm6]	T	C	2.884e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	14521676	3R_14521676_SNP [dm3] 3R_18695954_SNP [dm6]	C	T	2.895e^-4	0.807	DOWNSTREAM CG34282 INTERGENIC
3L	15503434	3L_15503434_SNP [dm3] 3L_15510334_SNP [dm6]	A	G	2.901e^-4	0.807	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11100507	3L_11100507_SNP [dm3] 3L_11107407_SNP [dm6]	C	G	2.908e^-4	0.807	UTR_5_PRIME CG32073 UPSTREAM CG12522 & 1 other
2L	3372489	2L_3372489_SNP [dm3] 2L_3372489_SNP [dm6]	C	T	2.911e^-4	0.807	INTRON CG34394	TF binding site mE1_TFBS_D
2R	9283431	2R_9283431_SNP [dm3] 2R_13395926_SNP [dm6]	A	G	2.913e^-4	0.807	SYNONYMOUS_CODING CG4744
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	2.918e^-4	0.807	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10661664	2L_10661664_SNP [dm3] 2L_10661664_SNP [dm6]	C	T	2.923e^-4	0.807	UPSTREAM CG31871 INTERGENIC
3L	11341765	3L_11341765_SNP [dm3] 3L_11348665_SNP [dm6]	A	T	2.928e^-4	0.807	DOWNSTREAM CR45251 INTERGENIC
3R	15569313	3R_15569313_SNP [dm3] 3R_19743591_SNP [dm6]	A	G	2.931e^-4	0.807	DOWNSTREAM CR43488 INTRON GluClalpha
X	16785567	X_16785567_SNP [dm3] X_16891534_SNP [dm6]	A	G	2.935e^-4	0.807	DOWNSTREAM CG13002 INTERGENIC
3R	9119639	3R_9119639_SNP [dm3] 3R_13293917_SNP [dm6]	A	G	2.942e^-4	0.807	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6756164	2R_6756164_SNP [dm3] 2R_10868659_SNP [dm6]	G	C	2.948e^-4	0.807	INTRON CG30015
2L	19757244	2L_19757244_SNP [dm3] 2L_19757244_SNP [dm6]	T	C	2.950e^-4	0.807	UPSTREAM CG10631 DOWNSTREAM CG10628 INTERGENIC
3L	13117722	3L_13117722_DEL [dm3] 3L_13124622_DEL [dm6]	GC	A	2.955e^-4	0.807	INTERGENIC
2R	6691425	2R_6691425_SNP [dm3] 2R_10803920_SNP [dm6]	A	G	2.957e^-4	0.807	NON_SYNONYMOUS_CODING wde
X	6704420	X_6704420_SNP [dm3] X_6810387_SNP [dm6]	C	T	2.964e^-4	0.807	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21440886	X_21440886_SNP [dm3] X_21569859_SNP [dm6]	A	C	2.969e^-4	0.807	INTERGENIC
2L	20966076	2L_20966076_SNP [dm3] 2L_20966076_SNP [dm6]	G	T	2.972e^-4	0.807	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
X	13422443	X_13422443_SNP [dm3] X_13528410_SNP [dm6]	C	A	2.977e^-4	0.807	NON_SYNONYMOUS_CODING CG15754 DOWNSTREAM CR44427
2L	21918902	2L_21918902_SNP [dm3] 2L_21918902_SNP [dm6]	A	G	2.980e^-4	0.807	INTRON CG11634
X	10097765	X_10097765_SNP [dm3] X_10203732_SNP [dm6]	T	G	2.983e^-4	0.807	UPSTREAM CR32690 INTRON CR44894
2L	13050749	2L_13050749_SNP [dm3] 2L_13050749_SNP [dm6]	T	G	2.983e^-4	0.807	INTRON CG9932
3R	8378821	3R_8378821_SNP [dm3] 3R_12553099_SNP [dm6]	G	A	2.985e^-4	0.807	SYNONYMOUS_CODING Octbeta2R	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7512927	2R_7512927_SNP [dm3] 2R_11625422_SNP [dm6]	T	G	2.988e^-4	0.807	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14405275	X_14405275_SNP [dm3] X_14511242_SNP [dm6]	G	C	2.988e^-4	0.807	INTERGENIC
X	4331818	X_4331818_SNP [dm3] X_4437785_SNP [dm6]	T	A	2.990e^-4	0.807	INTRON CR32773 & 1 other
3R	7014352	3R_7014352_SNP [dm3] 3R_11188630_SNP [dm6]	C	T	2.999e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14499902	2R_14499902_SNP [dm3] 2R_18612397_SNP [dm6]	A	G	3.003e^-4	0.807	SYNONYMOUS_CODING CG42697 UPSTREAM GEFmeso & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	18302524	2L_18302524_SNP [dm3] 2L_18302524_SNP [dm6]	G	A	3.005e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26241271	3R_26241271_SNP [dm3] 3R_30415549_SNP [dm6]	G	A	3.010e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9408338	2R_9408338_SNP [dm3] 2R_13520833_SNP [dm6]	A	G	3.026e^-4	0.807	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11965310	2L_11965310_INS [dm3] 2L_11965310_INS [dm6]	A	AA	3.027e^-4	0.807	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8447984	3L_8447984_SNP [dm3] 3L_8454884_SNP [dm6]	C	T	3.027e^-4	0.807	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13448762	2L_13448762_SNP [dm3] 2L_13448762_SNP [dm6]	G	A	3.035e^-4	0.807	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2L	18289983	2L_18289983_SNP [dm3] 2L_18289983_SNP [dm6]	T	G	3.037e^-4	0.807	DOWNSTREAM CR44696 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	4538840	3L_4538840_INS [dm3] 3L_4538840_INS [dm6]	T	TTT	3.052e^-4	0.807	DOWNSTREAM CG32243 INTRON CG11353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6693733	2R_6693733_SNP [dm3] 2R_10806228_SNP [dm6]	G	A	3.055e^-4	0.807	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8316879	3L_8316879_INS [dm3] 3L_8323779_INS [dm6]	T	AA	3.056e^-4	0.807	INTERGENIC
3R	8362211	3R_8362211_SNP [dm3] 3R_12536489_SNP [dm6]	T	C	3.058e^-4	0.807	INTRON Octbeta3R
X	10097795	X_10097795_SNP [dm3] X_10203762_SNP [dm6]	A	C	3.062e^-4	0.807	UPSTREAM CR32690 INTRON CR44894
X	10097808	X_10097808_SNP [dm3] X_10203775_SNP [dm6]	T	A	3.062e^-4	0.807	UPSTREAM CR32690 INTRON CR44894
X	13572709	X_13572709_SNP [dm3] X_13678676_SNP [dm6]	T	C	3.062e^-4	0.807	SYNONYMOUS_CODING CG12177 DOWNSTREAM CG11162
3L	8766317	3L_8766317_INS [dm3] 3L_8773217_INS [dm6]	T	TTT	3.066e^-4	0.807	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	13894387	3L_13894387_SNP [dm3] 3L_13901287_SNP [dm6]	A	G	3.074e^-4	0.807	INTRON dysc
2L	4227598	2L_4227598_SNP [dm3] 2L_4227598_SNP [dm6]	T	A	3.076e^-4	0.807	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	21604320	3R_21604320_SNP [dm3] 3R_25778598_SNP [dm6]	A	C	3.077e^-4	0.807	UPSTREAM CG4956 INTERGENIC
2R	9864341	2R_9864341_SNP [dm3] 2R_13976836_SNP [dm6]	G	A	3.081e^-4	0.807	SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21603012	3R_21603012_DEL [dm3] 3R_25777290_DEL [dm6]	ATC	G	3.081e^-4	0.807	UTR_3_PRIME CG4956 UPSTREAM CG17195
2R	14090542	2R_14090542_SNP [dm3] 2R_18203037_SNP [dm6]	G	A	3.086e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20255607	2L_20255607_SNP [dm3] 2L_20255607_SNP [dm6]	C	G	3.089e^-4	0.807	DOWNSTREAM CG17571 INTERGENIC
2L	12089021	2L_12089021_SNP [dm3] 2L_12089021_SNP [dm6]	T	C	3.090e^-4	0.807	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15507853	3L_15507853_SNP [dm3] 3L_15514753_SNP [dm6]	G	C	3.092e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26332390	3R_26332390_SNP [dm3] 3R_30506668_SNP [dm6]	G	A	3.101e^-4	0.807	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
3R	8147360	3R_8147360_SNP [dm3] 3R_12321638_SNP [dm6]	G	C	3.108e^-4	0.807	DOWNSTREAM tRNA:CR31432 INTERGENIC
2L	18292327	2L_18292327_SNP [dm3] 2L_18292327_SNP [dm6]	T	G	3.109e^-4	0.807	UPSTREAM CG43362 & 1 other DOWNSTREAM CR44693 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12018646	2R_12018646_SNP [dm3] 2R_16131141_SNP [dm6]	G	T	3.112e^-4	0.807	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1120634	3L_1120634_SNP [dm3] 3L_1120634_SNP [dm6]	A	T	3.114e^-4	0.807	INTERGENIC
3L	17685170	3L_17685170_SNP [dm3] 3L_17692070_SNP [dm6]	C	A	3.115e^-4	0.807	INTRON Ccn
X	19948864	X_19948864_DEL [dm3] X_20054831_DEL [dm6]	AA	A	3.118e^-4	0.807	INTRON Dop2R
2L	19584058	2L_19584058_SNP [dm3] 2L_19584058_SNP [dm6]	T	A	3.122e^-4	0.807	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9635050	3L_9635050_SNP [dm3] 3L_9641950_SNP [dm6]	C	G	3.128e^-4	0.807	DOWNSTREAM CG18180 INTRON fry
X	4878193	X_4878193_SNP [dm3] X_4984160_SNP [dm6]	T	C	3.130e^-4	0.807	INTRON CR44833	regulatory region REDfly_CRMs
2L	19757248	2L_19757248_SNP [dm3] 2L_19757248_SNP [dm6]	C	A	3.133e^-4	0.807	UTR_3_PRIME CG10628 UPSTREAM CG10631
2L	9681602	2L_9681602_SNP [dm3] 2L_9681602_SNP [dm6]	A	G	3.136e^-4	0.807	DOWNSTREAM Pka-C1 INTERGENIC
2L	9299168	2L_9299168_SNP [dm3] 2L_9299168_SNP [dm6]	T	A	3.141e^-4	0.807	UTR_3_PRIME Ggamma30A
3R	22782024	3R_22782024_DEL [dm3] 3R_26956302_DEL [dm6]	TTTTCT	T	3.153e^-4	0.807	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	15779184	2L_15779184_SNP [dm3] 2L_15779184_SNP [dm6]	C	T	3.155e^-4	0.807	INTERGENIC
3L	14045803	3L_14045803_SNP [dm3] 3L_14052703_SNP [dm6]	C	A	3.158e^-4	0.807	NON_SYNONYMOUS_CODING CG13484 UPSTREAM CG43986 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14458402	2L_14458402_SNP [dm3] 2L_14458402_SNP [dm6]	G	A	3.160e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8766323	3L_8766323_SNP [dm3] 3L_8773223_SNP [dm6]	A	G	3.163e^-4	0.807	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
2R	12834812	2R_12834812_SNP [dm3] 2R_16947307_SNP [dm6]	T	G	3.165e^-4	0.807	NON_SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 2 others
3R	7772330	3R_7772330_SNP [dm3] 3R_11946608_SNP [dm6]	G	A	3.174e^-4	0.808	INTRON Cad87A
3R	17722113	3R_17722113_INS [dm3] 3R_21896391_INS [dm6]	G	TAT	3.180e^-4	0.808	INTRON CG6678
2L	11213083	2L_11213083_SNP [dm3] 2L_11213083_SNP [dm6]	G	T	3.183e^-4	0.808	INTRON ab
X	20322621	X_20322621_SNP [dm3] X_20451594_SNP [dm6]	C	G	3.191e^-4	0.808	INTRON CG32506
2L	12385860	2L_12385860_DEL [dm3] 2L_12385860_DEL [dm6]	TCA	T	3.193e^-4	0.808	INTRON bru-2
3L	10655324	3L_10655324_SNP [dm3] 3L_10662224_SNP [dm6]	T	C	3.195e^-4	0.808	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25972075	3R_25972075_SNP [dm3] 3R_30146353_SNP [dm6]	T	C	3.202e^-4	0.809	INTRON AdoR
2L	10570541	2L_10570541_INS [dm3] 2L_10570541_INS [dm6]	T	TGCCAAAT	3.211e^-4	0.81	INTRON Trim9
2R	15671958	2R_15671958_SNP [dm3] 2R_19784453_SNP [dm6]	G	T	3.219e^-4	0.81	UPSTREAM Obp56g EXON CR45231	regulatory region REDfly_CRMs
2L	17947176	2L_17947176_SNP [dm3] 2L_17947176_SNP [dm6]	C	T	3.224e^-4	0.81	DOWNSTREAM CR44398 INTERGENIC
2R	9864393	2R_9864393_SNP [dm3] 2R_13976888_SNP [dm6]	T	C	3.227e^-4	0.81	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22742758	3R_22742758_SNP [dm3] 3R_26917036_SNP [dm6]	T	C	3.228e^-4	0.81	INTRON sda
3L	15936825	3L_15936825_SNP [dm3] 3L_15943725_SNP [dm6]	G	A	3.235e^-4	0.811	INTRON Pka-C3
2R	11060411	2R_11060411_SNP [dm3] 2R_15172906_SNP [dm6]	T	C	3.244e^-4	0.812	INTRON igl	TF binding site mE1_TFBS_HSA
2R	7957192	2R_7957192_SNP [dm3] 2R_12069687_SNP [dm6]	C	T	3.251e^-4	0.812	INTRON CG8888	TF binding site BDTNP1_TFBS_sna
2L	11619668	2L_11619668_SNP [dm3] 2L_11619668_SNP [dm6]	C	T	3.253e^-4	0.812	INTRON kek2
X	18806830	X_18806830_SNP [dm3] X_18912797_SNP [dm6]	C	A	3.289e^-4	0.819	DOWNSTREAM CG7378 & 1 other INTERGENIC
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	3.296e^-4	0.819	DOWNSTREAM CG4438 INTRON Shawl
2L	13049897	2L_13049897_SNP [dm3] 2L_13049897_SNP [dm6]	G	A	3.296e^-4	0.819	INTRON CG9932
3L	22322753	3L_22322753_SNP [dm3] 3L_22329653_SNP [dm6]	C	T	3.300e^-4	0.819	UPSTREAM CG32450 INTRON Ten-m	TF binding site mE1_TFBS_cad
2L	10579967	2L_10579967_SNP [dm3] 2L_10579967_SNP [dm6]	A	C	3.302e^-4	0.819	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
X	7062577	X_7062577_SNP [dm3] X_7168544_SNP [dm6]	C	G	3.310e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9578828	3R_9578828_SNP [dm3] 3R_13753106_SNP [dm6]	A	G	3.312e^-4	0.819	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9236199	3L_9236199_SNP [dm3] 3L_9243099_SNP [dm6]	G	A	3.319e^-4	0.82	INTERGENIC
2L	18320873	2L_18320873_SNP [dm3] 2L_18320873_SNP [dm6]	C	T	3.334e^-4	0.822	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10655129	3L_10655129_SNP [dm3] 3L_10662029_SNP [dm6]	C	T	3.339e^-4	0.822	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18362211	2L_18362211_SNP [dm3] 2L_18362211_SNP [dm6]	C	T	3.345e^-4	0.822	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11213150	2L_11213150_SNP [dm3] 2L_11213150_SNP [dm6]	A	T	3.347e^-4	0.822	INTRON ab
3R	26028649	3R_26028649_SNP [dm3] 3R_30202927_SNP [dm6]	C	T	3.350e^-4	0.822	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8800599	X_8800599_SNP [dm3] X_8906566_SNP [dm6]	A	G	3.372e^-4	0.826	UPSTREAM e_r_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26781282	3R_26781282_SNP [dm3] 3R_30955560_SNP [dm6]	A	C	3.390e^-4	0.828	INTERGENIC
3L	4209992	3L_4209992_SNP [dm3] 3L_4209992_SNP [dm6]	G	A	3.392e^-4	0.828	UPSTREAM Cpr64Aa DOWNSTREAM Cpr64Ab INTRON CG43367
3R	20919879	3R_20919879_SNP [dm3] 3R_25094157_SNP [dm6]	T	A	3.397e^-4	0.828	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4996625	2L_4996625_SNP [dm3] 2L_4996625_SNP [dm6]	C	T	3.401e^-4	0.828	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14803254	2L_14803254_SNP [dm3] 2L_14803254_SNP [dm6]	C	T	3.406e^-4	0.828	UTR_3_PRIME CG33308
3R	22086962	3R_22086962_DEL [dm3] 3R_26261240_DEL [dm6]	AC	A	3.407e^-4	0.828	UTR_5_PRIME Ald INTRON Ald EXON CR44321	TF binding site mE1_TFBS_Trl
3R	26781308	3R_26781308_SNP [dm3] 3R_30955586_SNP [dm6]	C	T	3.409e^-4	0.828	INTERGENIC
2R	9871658	2R_9871658_SNP [dm3] 2R_13984153_SNP [dm6]	T	G	3.425e^-4	0.829	UPSTREAM Ctf4 DOWNSTREAM RN-tre INTRON CG8067	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16647322	3L_16647322_SNP [dm3] 3L_16654222_SNP [dm6]	G	C	3.428e^-4	0.829	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	26499168	3R_26499168_INS [dm3] 3R_30673446_INS [dm6]	T	TAGCT	3.435e^-4	0.829	INTERGENIC
3L	16647330	3L_16647330_DEL [dm3] 3L_16654230_DEL [dm6]	ATTA	T	3.440e^-4	0.829	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	14119948	2R_14119948_SNP [dm3] 2R_18232443_SNP [dm6]	G	A	3.441e^-4	0.829	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14175900	3R_14175900_SNP [dm3] 3R_18350178_SNP [dm6]	C	T	3.443e^-4	0.829	INTRON CG15803
2L	1348256	2L_1348256_SNP [dm3] 2L_1348256_SNP [dm6]	T	A	3.447e^-4	0.829	INTERGENIC
3L	15936937	3L_15936937_SNP [dm3] 3L_15943837_SNP [dm6]	C	A	3.456e^-4	0.829	INTRON Pka-C3
3L	1584903	3L_1584903_SNP [dm3] 3L_1584903_SNP [dm6]	T	C	3.464e^-4	0.829	INTRON CG13917
X	15560072	X_15560072_SNP [dm3] X_15666039_SNP [dm6]	C	T	3.464e^-4	0.829	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9819230	2R_9819230_SNP [dm3] 2R_13931725_SNP [dm6]	G	T	3.464e^-4	0.829	INTRON shot
3R	26247324	3R_26247324_SNP [dm3] 3R_30421602_SNP [dm6]	A	G	3.470e^-4	0.829	SYNONYMOUS_CODING CG2217 UTR_5_PRIME CG42740	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12459235	2R_12459235_SNP [dm3] 2R_16571730_SNP [dm6]	A	T	3.470e^-4	0.829	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	1553986	X_1553986_SNP [dm3] X_1659953_SNP [dm6]	T	C	3.479e^-4	0.829	UTR_3_PRIME br INTRON Mur2B
3L	13301620	3L_13301620_SNP [dm3] 3L_13308520_SNP [dm6]	T	C	3.480e^-4	0.829	INTERGENIC
2L	1892677	2L_1892677_SNP [dm3] 2L_1892677_SNP [dm6]	C	T	3.498e^-4	0.83	INTRON CG7337
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	3.505e^-4	0.83	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8447909	3L_8447909_SNP [dm3] 3L_8454809_SNP [dm6]	A	T	3.505e^-4	0.83	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19526145	2L_19526145_SNP [dm3] 2L_19526145_SNP [dm6]	C	T	3.505e^-4	0.83	SYNONYMOUS_CODING CG10166 UPSTREAM CG10137 DOWNSTREAM CG10132 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8313237	3L_8313237_SNP [dm3] 3L_8320137_SNP [dm6]	C	A	3.505e^-4	0.83	UPSTREAM CG13670 INTERGENIC
X	13673973	X_13673973_SNP [dm3] X_13779940_SNP [dm6]	C	G	3.522e^-4	0.831	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	8567874	2R_8567874_SNP [dm3] 2R_12680369_SNP [dm6]	T	C	3.524e^-4	0.831	SYNONYMOUS_CODING CG8771 UPSTREAM CG42708
3L	10717908	3L_10717908_SNP [dm3] 3L_10724808_SNP [dm6]	A	T	3.525e^-4	0.831	INTERGENIC
X	21426187	X_21426187_SNP [dm3] X_21555160_SNP [dm6]	C	A	3.540e^-4	0.833	INTERGENIC	transposable element FlyBase
3L	1103306	3L_1103306_SNP [dm3] 3L_1103306_SNP [dm6]	G	C	3.549e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1340475	2L_1340475_SNP [dm3] 2L_1340475_SNP [dm6]	C	T	3.553e^-4	0.833	DOWNSTREAM CG33923 INTERGENIC
2L	16190835	2L_16190835_INS [dm3] 2L_16190835_INS [dm6]	A	AA	3.563e^-4	0.833	DOWNSTREAM Ca-alpha1D INTERGENIC
3R	26332126	3R_26332126_SNP [dm3] 3R_30506404_SNP [dm6]	C	T	3.564e^-4	0.833	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
3R	26637255	3R_26637255_SNP [dm3] 3R_30811533_SNP [dm6]	C	T	3.570e^-4	0.833	INTRON cindr
2R	10828956	2R_10828956_SNP [dm3] 2R_14941451_SNP [dm6]	A	G	3.573e^-4	0.833	UPSTREAM CG10257 DOWNSTREAM Lap1 INTERGENIC
3L	1120642	3L_1120642_SNP [dm3] 3L_1120642_SNP [dm6]	A	T	3.580e^-4	0.833	INTERGENIC
2L	7090717	2L_7090717_SNP [dm3] 2L_7090717_SNP [dm6]	C	T	3.581e^-4	0.833	INTERGENIC
3R	26638704	3R_26638704_SNP [dm3] 3R_30812982_SNP [dm6]	G	A	3.583e^-4	0.833	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17688441	3L_17688441_SNP [dm3] 3L_17695341_SNP [dm6]	C	A	3.584e^-4	0.833	INTRON Ccn
3R	21833710	3R_21833710_SNP [dm3] 3R_26007988_SNP [dm6]	G	A	3.588e^-4	0.833	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8315093	3L_8315093_DEL [dm3] 3L_8321993_DEL [dm6]	GGAGGAGGATGAA...	G	3.600e^-4	0.833	CODON_DELETION CG13670
X	15566390	X_15566390_SNP [dm3] X_15672357_SNP [dm6]	A	G	3.607e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7081908	3R_7081908_SNP [dm3] 3R_11256186_SNP [dm6]	A	G	3.610e^-4	0.833	UPSTREAM CR43283 INTERGENIC
3L	12858005	3L_12858005_SNP [dm3] 3L_12864905_SNP [dm6]	A	G	3.611e^-4	0.833	INTERGENIC
2R	12781527	2R_12781527_SNP [dm3] 2R_16894022_SNP [dm6]	A	T	3.612e^-4	0.833	INTRON CG8910
3L	16647288	3L_16647288_SNP [dm3] 3L_16654188_SNP [dm6]	T	A	3.613e^-4	0.833	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	18292532	2L_18292532_SNP [dm3] 2L_18292532_SNP [dm6]	C	T	3.617e^-4	0.833	UTR_5_PRIME Sfp36F DOWNSTREAM CR44693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	953863	2L_953863_SNP [dm3] 2L_953863_SNP [dm6]	G	A	3.624e^-4	0.833	INTRON CG4341
2R	12018569	2R_12018569_SNP [dm3] 2R_16131064_SNP [dm6]	T	A	3.625e^-4	0.833	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14251642	X_14251642_SNP [dm3] X_14357609_SNP [dm6]	C	G	3.628e^-4	0.833	INTRON dpr8
2R	15838769	2R_15838769_SNP [dm3] 2R_19951264_SNP [dm6]	T	C	3.643e^-4	0.833	UPSTREAM CG10822 INTERGENIC
2L	18352307	2L_18352307_SNP [dm3] 2L_18352307_SNP [dm6]	T	G	3.646e^-4	0.833	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
3L	2577661	3L_2577661_SNP [dm3] 3L_2577661_SNP [dm6]	G	C	3.656e^-4	0.833	INTRON msn	regulatory region REDfly_CRMs
2L	17063631	2L_17063631_SNP [dm3] 2L_17063631_SNP [dm6]	T	A	3.663e^-4	0.833	INTERGENIC
3R	8571928	3R_8571928_SNP [dm3] 3R_12746206_SNP [dm6]	T	C	3.667e^-4	0.833	UTR_3_PRIME beat-Vc
2L	13123746	2L_13123746_SNP [dm3] 2L_13123746_SNP [dm6]	T	G	3.671e^-4	0.833	INTERGENIC
3L	6573087	3L_6573087_SNP [dm3] 3L_6579987_SNP [dm6]	C	T	3.674e^-4	0.833	INTRON CG18769 & 1 other
2L	9556631	2L_9556631_SNP [dm3] 2L_9556631_SNP [dm6]	G	A	3.674e^-4	0.833	INTRON jp
2L	842986	2L_842986_SNP [dm3] 2L_842986_SNP [dm6]	C	T	3.682e^-4	0.833	UPSTREAM drongo INTRON drongo
2R	19330696	2R_19330696_SNP [dm3] 2R_23443173_SNP [dm6]	C	T	3.688e^-4	0.833	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13448593	2L_13448593_SNP [dm3] 2L_13448593_SNP [dm6]	G	A	3.690e^-4	0.833	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
3L	11341795	3L_11341795_SNP [dm3] 3L_11348695_SNP [dm6]	C	T	3.700e^-4	0.833	DOWNSTREAM CR45251 INTERGENIC
X	20611671	X_20611671_SNP [dm3] X_20740644_SNP [dm6]	G	C	3.708e^-4	0.833	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7597883	3L_7597883_SNP [dm3] 3L_7604783_SNP [dm6]	T	G	3.709e^-4	0.833	UPSTREAM CG33275 INTRON CG33275
3R	26071841	3R_26071841_SNP [dm3] 3R_30246119_SNP [dm6]	A	T	3.723e^-4	0.833	NON_SYNONYMOUS_CODING CG9733 SPLICE_SITE_REGION CG9733
2L	18287971	2L_18287971_SNP [dm3] 2L_18287971_SNP [dm6]	G	C	3.734e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26781153	3R_26781153_SNP [dm3] 3R_30955431_SNP [dm6]	T	G	3.736e^-4	0.833	INTERGENIC
2L	8926373	2L_8926373_SNP [dm3] 2L_8926373_SNP [dm6]	C	T	3.742e^-4	0.833	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12088978	2L_12088978_SNP [dm3] 2L_12088978_SNP [dm6]	T	A	3.765e^-4	0.833	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	3.784e^-4	0.833	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6048780	3R_6048780_INS [dm3] 3R_10223058_INS [dm6]	T	TAAGGATATC	3.788e^-4	0.833	DOWNSTREAM CG12817 & 1 other INTRON CG12420	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10597189	2R_10597189_SNP [dm3] 2R_14709684_SNP [dm6]	C	T	3.796e^-4	0.833	INTRON mspo
3R	22676840	3R_22676840_SNP [dm3] 3R_26851118_SNP [dm6]	G	C	3.796e^-4	0.833	INTRON Lerp	TF binding site mE1_TFBS_inv
3L	1120644	3L_1120644_SNP [dm3] 3L_1120644_SNP [dm6]	A	T	3.797e^-4	0.833	INTERGENIC
3L	13894453	3L_13894453_SNP [dm3] 3L_13901353_SNP [dm6]	A	G	3.797e^-4	0.833	INTRON dysc
2R	7512932	2R_7512932_SNP [dm3] 2R_11625427_SNP [dm6]	T	C	3.798e^-4	0.833	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3291334	2L_3291334_SNP [dm3] 2L_3291334_SNP [dm6]	C	T	3.802e^-4	0.833	SYNONYMOUS_STOP CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15509648	3L_15509648_SNP [dm3] 3L_15516548_SNP [dm6]	T	G	3.802e^-4	0.833	UTR_3_PRIME CG13454 DOWNSTREAM mex1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2713410	3L_2713410_SNP [dm3] 3L_2713410_SNP [dm6]	T	G	3.808e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11341767	3L_11341767_SNP [dm3] 3L_11348667_SNP [dm6]	G	T	3.812e^-4	0.833	DOWNSTREAM CR45251 INTERGENIC
3L	8626483	3L_8626483_SNP [dm3] 3L_8633383_SNP [dm6]	C	T	3.825e^-4	0.833	SYNONYMOUS_CODING Cdc6 INTRON Zasp66
2R	18492541	2R_18492541_SNP [dm3] 2R_22605036_SNP [dm6]	G	T	3.838e^-4	0.833	SYNONYMOUS_CODING CG4294 UPSTREAM RpS16	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12808089	3L_12808089_SNP [dm3] 3L_12814989_SNP [dm6]	C	G	3.842e^-4	0.833	UPSTREAM CG10754 INTRON CG42588	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7488818	2L_7488818_DEL [dm3] 2L_7488818_DEL [dm6]	CC	C	3.847e^-4	0.833	INTRON Ziz
2R	9855810	2R_9855810_SNP [dm3] 2R_13968305_SNP [dm6]	A	T	3.850e^-4	0.833	UPSTREAM Aats-phe DOWNSTREAM Cp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3618980	2L_3618980_SNP [dm3] 2L_3618980_SNP [dm6]	A	T	3.852e^-4	0.833	UPSTREAM Dot INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	7253800	2L_7253800_SNP [dm3] 2L_7253800_SNP [dm6]	A	C	3.852e^-4	0.833	UPSTREAM CG13786 INTERGENIC
2R	18003335	2R_18003335_SNP [dm3] 2R_22115830_SNP [dm6]	G	A	3.853e^-4	0.833	SPLICE_SITE_REGION CG30281 SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
3R	6618990	3R_6618990_SNP [dm3] 3R_10793268_SNP [dm6]	C	G	3.858e^-4	0.833	NON_SYNONYMOUS_CODING CG14687 DOWNSTREAM CG14692	TF binding site BDTNP1_TFBS_twi
2L	13626889	2L_13626889_DEL [dm3] 2L_13626889_DEL [dm6]	TCTGAACTGCAGTAAAAAGA...	T	3.860e^-4	0.833	INTRON kuz
2L	18823058	2L_18823058_SNP [dm3] 2L_18823058_SNP [dm6]	G	T	3.864e^-4	0.833	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
3R	14673166	3R_14673166_SNP [dm3] 3R_18847444_SNP [dm6]	G	A	3.868e^-4	0.833	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18599471	3R_18599471_DEL [dm3] 3R_22773749_DEL [dm6]	CCC	C	3.869e^-4	0.833	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
2R	11057862	2R_11057862_SNP [dm3] 2R_15170357_SNP [dm6]	C	T	3.873e^-4	0.833	INTRON igl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12144909	2R_12144909_SNP [dm3] 2R_16257404_SNP [dm6]	A	C	3.879e^-4	0.833	INTRON CngA
2L	14470221	2L_14470221_SNP [dm3] 2L_14470221_SNP [dm6]	C	T	3.880e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18954413	2R_18954413_SNP [dm3] 2R_23066890_SNP [dm6]	C	A	3.880e^-4	0.833	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17684511	3L_17684511_SNP [dm3] 3L_17691411_SNP [dm6]	T	G	3.885e^-4	0.833	INTRON Ccn
3L	14082735	3L_14082735_SNP [dm3] 3L_14089635_SNP [dm6]	A	G	3.888e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15230225	2R_15230225_SNP [dm3] 2R_19342720_SNP [dm6]	C	T	3.888e^-4	0.833	SYNONYMOUS_CODING CG9975 INTRON Rgk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	3.889e^-4	0.833	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3387363	2R_3387363_SNP [dm3] 2R_7499858_SNP [dm6]	C	A	3.893e^-4	0.833	UTR_5_PRIME dpa UPSTREAM didum	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8532887	3L_8532887_SNP [dm3] 3L_8539787_SNP [dm6]	G	A	3.896e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11340245	3L_11340245_SNP [dm3] 3L_11347145_SNP [dm6]	A	C	3.897e^-4	0.833	INTERGENIC
2R	9282728	2R_9282728_SNP [dm3] 2R_13395223_SNP [dm6]	T	A	3.900e^-4	0.833	SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
2L	16793963	2L_16793963_SNP [dm3] 2L_16793963_SNP [dm6]	T	C	3.903e^-4	0.833	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	800689	2L_800689_SNP [dm3] 2L_800689_SNP [dm6]	G	A	3.912e^-4	0.833	DOWNSTREAM CR45259 INTERGENIC
3R	26245258	3R_26245258_SNP [dm3] 3R_30419536_SNP [dm6]	A	C	3.916e^-4	0.833	START_GAINED CG42740 UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_inv
2L	18309224	2L_18309224_SNP [dm3] 2L_18309224_SNP [dm6]	A	T	3.916e^-4	0.833	UTR_3_PRIME CG43354 UPSTREAM CR44694 & 2 others	TF binding site BDTNP1_TFBS_twi
3R	24013340	3R_24013340_SNP [dm3] 3R_28187618_SNP [dm6]	G	A	3.925e^-4	0.833	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3176888	2L_3176888_SNP [dm3] 2L_3176888_SNP [dm6]	G	A	3.926e^-4	0.833	INTRON CG34393	TF binding site BDTNP1_TFBS_da
3R	26353012	3R_26353012_SNP [dm3] 3R_30527290_SNP [dm6]	C	T	3.932e^-4	0.833	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	5570840	2L_5570840_SNP [dm3] 2L_5570840_SNP [dm6]	C	A	3.935e^-4	0.833	INTERGENIC
3R	26613910	3R_26613910_SNP [dm3] 3R_30788188_SNP [dm6]	T	C	3.957e^-4	0.833	UTR_3_PRIME zfh1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2577637	3L_2577637_SNP [dm3] 3L_2577637_SNP [dm6]	A	G	3.962e^-4	0.833	INTRON msn	regulatory region REDfly_CRMs
2R	9329257	2R_9329257_SNP [dm3] 2R_13441752_SNP [dm6]	A	C	3.964e^-4	0.833	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2R	13170350	2R_13170350_SNP [dm3] 2R_17282845_SNP [dm6]	T	C	3.965e^-4	0.833	INTRON mbl
3L	2577633	3L_2577633_SNP [dm3] 3L_2577633_SNP [dm6]	A	C	3.965e^-4	0.833	INTRON msn	regulatory region REDfly_CRMs
2L	20972118	2L_20972118_SNP [dm3] 2L_20972118_SNP [dm6]	G	A	3.968e^-4	0.833	INTRON CG42238
2L	18295054	2L_18295054_SNP [dm3] 2L_18295054_SNP [dm6]	A	C	3.971e^-4	0.833	UTR_5_PRIME CG5790 UPSTREAM CR43358
2R	8567703	2R_8567703_SNP [dm3] 2R_12680198_SNP [dm6]	C	G	3.974e^-4	0.833	SYNONYMOUS_CODING CG8771 UPSTREAM CG42708
X	21435837	X_21435837_SNP [dm3] X_21564810_SNP [dm6]	A	T	3.977e^-4	0.833	INTERGENIC
3L	9635096	3L_9635096_SNP [dm3] 3L_9641996_SNP [dm6]	A	G	3.982e^-4	0.833	DOWNSTREAM CG18180 INTRON fry
3L	11340315	3L_11340315_SNP [dm3] 3L_11347215_SNP [dm6]	G	T	3.988e^-4	0.833	INTERGENIC
2L	7211619	2L_7211619_INS [dm3] 2L_7211619_INS [dm6]	A	AA	3.991e^-4	0.833	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18615859	2L_18615859_SNP [dm3] 2L_18615859_SNP [dm6]	A	C	3.995e^-4	0.833	UTR_5_PRIME CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21442627	X_21442627_SNP [dm3] X_21571600_SNP [dm6]	C	T	3.999e^-4	0.833	INTERGENIC
3L	1491832	3L_1491832_SNP [dm3] 3L_1491832_SNP [dm6]	G	A	3.999e^-4	0.833	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13894493	3L_13894493_SNP [dm3] 3L_13901393_SNP [dm6]	T	G	4.005e^-4	0.833	INTRON dysc
3R	15186216	3R_15186216_SNP [dm3] 3R_19360494_SNP [dm6]	A	G	4.010e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	18288175	2L_18288175_SNP [dm3] 2L_18288175_SNP [dm6]	G	A	4.014e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10758342	3L_10758342_SNP [dm3] 3L_10765242_SNP [dm6]	G	A	4.023e^-4	0.833	INTERGENIC
X	13908921	X_13908921_SNP [dm3] X_14014888_SNP [dm6]	C	T	4.026e^-4	0.833	UPSTREAM tRNA:S4:12Ea & 1 other DOWNSTREAM tRNA:R:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9788841	2L_9788841_SNP [dm3] 2L_9788841_SNP [dm6]	C	A	4.026e^-4	0.833	DOWNSTREAM IP3K1 EXON CR18854
2L	4410634	2L_4410634_SNP [dm3] 2L_4410634_SNP [dm6]	C	T	4.030e^-4	0.833	UPSTREAM CG43055 INTRON CG15431
3L	17683992	3L_17683992_SNP [dm3] 3L_17690892_SNP [dm6]	C	T	4.034e^-4	0.833	INTRON Ccn
X	13010791	X_13010791_SNP [dm3] X_13116758_SNP [dm6]	A	T	4.039e^-4	0.833	INTRON CG42237
X	21434272	X_21434272_DEL [dm3] X_21563245_DEL [dm6]	AGGGCCGCCAT...	A	4.042e^-4	0.833	INTERGENIC
3L	8196164	3L_8196164_SNP [dm3] 3L_8203064_SNP [dm6]	T	C	4.054e^-4	0.833	SYNONYMOUS_CODING CG13679 UPSTREAM CG7366
2R	20346123	2R_20346123_SNP [dm3] 2R_24458600_SNP [dm6]	A	C	4.056e^-4	0.833	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2R	8875892	2R_8875892_SNP [dm3] 2R_12988387_SNP [dm6]	C	A	4.062e^-4	0.833	INTERGENIC
2L	13611240	2L_13611240_SNP [dm3] 2L_13611240_SNP [dm6]	A	G	4.062e^-4	0.833	INTRON kuz
3R	21647504	3R_21647504_SNP [dm3] 3R_25821782_SNP [dm6]	C	T	4.063e^-4	0.833	INTERGENIC
2L	1298800	2L_1298800_DEL [dm3] 2L_1298800_DEL [dm6]	AA	A	4.078e^-4	0.833	INTERGENIC
2R	18038121	2R_18038121_SNP [dm3] 2R_22150616_SNP [dm6]	G	C	4.081e^-4	0.833	INTRON a
X	6577668	X_6577668_SNP [dm3] X_6683635_SNP [dm6]	C	T	4.083e^-4	0.833	UTR_3_PRIME CG4095 UPSTREAM Pink1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	13327526	X_13327526_SNP [dm3] X_13433493_SNP [dm6]	A	G	4.084e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18316285	2L_18316285_SNP [dm3] 2L_18316285_SNP [dm6]	A	T	4.089e^-4	0.833	INTERGENIC
2L	18953495	2L_18953495_SNP [dm3] 2L_18953495_SNP [dm6]	A	G	4.090e^-4	0.833	SYNONYMOUS_CODING CG10621	TF binding site mE1_TFBS_cad
2L	18303410	2L_18303410_SNP [dm3] 2L_18303410_SNP [dm6]	G	C	4.090e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA
3R	9146762	3R_9146762_SNP [dm3] 3R_13321040_SNP [dm6]	T	A	4.094e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18284758	2L_18284758_SNP [dm3] 2L_18284758_SNP [dm6]	C	T	4.097e^-4	0.833	DOWNSTREAM CG31787 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2586734	3R_2586734_SNP [dm3] 3R_6761012_SNP [dm6]	A	G	4.106e^-4	0.833	DOWNSTREAM CR45593 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
2L	14359259	2L_14359259_SNP [dm3] 2L_14359259_SNP [dm6]	G	A	4.109e^-4	0.833	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26781138	3R_26781138_SNP [dm3] 3R_30955416_SNP [dm6]	T	C	4.113e^-4	0.833	INTERGENIC
3R	21356662	3R_21356662_SNP [dm3] 3R_25530940_SNP [dm6]	A	G	4.115e^-4	0.833	INTRON msi
2L	16345935	2L_16345935_SNP [dm3] 2L_16345935_SNP [dm6]	G	T	4.118e^-4	0.833	SYNONYMOUS_CODING chif INTRON CG42231	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8513961	2R_8513961_SNP [dm3] 2R_12626456_SNP [dm6]	C	G	4.134e^-4	0.833	INTRON CG17760
3R	6436201	3R_6436201_SNP [dm3] 3R_10610479_SNP [dm6]	A	C	4.146e^-4	0.833	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24013343	3R_24013343_SNP [dm3] 3R_28187621_SNP [dm6]	T	G	4.151e^-4	0.833	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4333140	X_4333140_SNP [dm3] X_4439107_SNP [dm6]	G	C	4.154e^-4	0.833	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	3254104	3L_3254104_SNP [dm3] 3L_3254104_SNP [dm6]	C	T	4.157e^-4	0.833	EXON CR43626
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	4.160e^-4	0.833	INTRON fra
2R	4436953	2R_4436953_SNP [dm3] 2R_8549448_SNP [dm6]	A	G	4.167e^-4	0.833	INTERGENIC
2L	13447632	2L_13447632_SNP [dm3] 2L_13447632_SNP [dm6]	C	G	4.169e^-4	0.833	UTR_3_PRIME Hsp60D INTRON CG42784
3L	21597451	3L_21597451_SNP [dm3] 3L_21604351_SNP [dm6]	G	A	4.169e^-4	0.833	INTRON TfAP-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	21425973	X_21425973_SNP [dm3] X_21554946_SNP [dm6]	C	A	4.171e^-4	0.833	INTERGENIC	transposable element FlyBase
3L	2401516	3L_2401516_SNP [dm3] 3L_2401516_SNP [dm6]	A	G	4.173e^-4	0.833	INTRON CG45186
3L	22854973	3L_22854973_INS [dm3] 3L_22861873_INS [dm6]	T	TT	4.179e^-4	0.833	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	8060276	3R_8060276_SNP [dm3] 3R_12234554_SNP [dm6]	A	T	4.183e^-4	0.833	NON_SYNONYMOUS_CODING Cyp313a5 DOWNSTREAM Cyp313a2
3R	23922801	3R_23922801_SNP [dm3] 3R_28097079_SNP [dm6]	G	A	4.183e^-4	0.833	INTERGENIC
X	6424876	X_6424876_DEL [dm3] X_6530843_DEL [dm6]	AA	A	4.188e^-4	0.833	DOWNSTREAM RpL7A & 2 others INTERGENIC
3R	2493551	3R_2493551_SNP [dm3] 3R_6667829_SNP [dm6]	C	A	4.188e^-4	0.833	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	21246633	X_21246633_INS [dm3] X_21375606_INS [dm6]	T	TTGT	4.188e^-4	0.833	UPSTREAM slgA INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	24013445	3R_24013445_SNP [dm3] 3R_28187723_SNP [dm6]	A	C	4.191e^-4	0.833	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10323575	2R_10323575_SNP [dm3] 2R_14436070_SNP [dm6]	G	T	4.194e^-4	0.833	UTR_5_PRIME Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10737315	X_10737315_SNP [dm3] X_10843282_SNP [dm6]	C	T	4.197e^-4	0.833	SYNONYMOUS_CODING CG32669 DOWNSTREAM CG15209 INTRON sbr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9587170	2L_9587170_SNP [dm3] 2L_9587170_SNP [dm6]	G	A	4.214e^-4	0.833	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	6629409	3R_6629409_SNP [dm3] 3R_10803687_SNP [dm6]	G	A	4.214e^-4	0.833	SYNONYMOUS_CODING CG14692
2R	18267572	2R_18267572_SNP [dm3] 2R_22380067_SNP [dm6]	G	A	4.216e^-4	0.833	INTRON wrapper
3R	6484207	3R_6484207_SNP [dm3] 3R_10658485_SNP [dm6]	C	T	4.220e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12718319	3L_12718319_SNP [dm3] 3L_12725219_SNP [dm6]	T	G	4.231e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9146761	3R_9146761_SNP [dm3] 3R_13321039_SNP [dm6]	G	T	4.233e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4314053	3L_4314053_DEL [dm3] 3L_4314053_DEL [dm6]	AGAG	A	4.250e^-4	0.833		TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25692208	3R_25692208_SNP [dm3] 3R_29866486_SNP [dm6]	A	G	4.250e^-4	0.833	UPSTREAM Zip99C INTRON Zip99C
2L	18287915	2L_18287915_SNP [dm3] 2L_18287915_SNP [dm6]	A	T	4.262e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10320440	2R_10320440_SNP [dm3] 2R_14432935_SNP [dm6]	A	C	4.268e^-4	0.833	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16893594	2L_16893594_SNP [dm3] 2L_16893594_SNP [dm6]	C	T	4.270e^-4	0.833	SYNONYMOUS_CODING tweek
2R	16946078	2R_16946078_SNP [dm3] 2R_21058573_SNP [dm6]	C	A	4.272e^-4	0.833	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11622482	2L_11622482_SNP [dm3] 2L_11622482_SNP [dm6]	C	T	4.273e^-4	0.833	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
3R	26071545	3R_26071545_SNP [dm3] 3R_30245823_SNP [dm6]	G	T	4.281e^-4	0.833	SYNONYMOUS_CODING CG9733
3R	21655637	3R_21655637_SNP [dm3] 3R_25829915_SNP [dm6]	T	A	4.282e^-4	0.833	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3L	17477340	3L_17477340_SNP [dm3] 3L_17484240_SNP [dm6]	A	G	4.286e^-4	0.833	INTRON CG6333
X	13215990	X_13215990_SNP [dm3] X_13321957_SNP [dm6]	G	C	4.293e^-4	0.833	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10218280	2R_10218280_SNP [dm3] 2R_14330775_SNP [dm6]	G	A	4.295e^-4	0.833	INTRON Shroom
2R	8430337	2R_8430337_SNP [dm3] 2R_12542832_SNP [dm6]	A	C	4.298e^-4	0.833	INTRON fra
2R	11177051	2R_11177051_SNP [dm3] 2R_15289546_SNP [dm6]	T	C	4.304e^-4	0.833	INTRON Trpm
X	1942149	X_1942149_INS [dm3] X_2048116_INS [dm6]	T	TACTAAT	4.307e^-4	0.833	INTRON CG4313 & 1 other
3R	26352992	3R_26352992_SNP [dm3] 3R_30527270_SNP [dm6]	T	C	4.308e^-4	0.833	UPSTREAM jdp INTERGENIC
3L	14082740	3L_14082740_SNP [dm3] 3L_14089640_SNP [dm6]	A	T	4.308e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7201650	2R_7201650_SNP [dm3] 2R_11314145_SNP [dm6]	C	T	4.312e^-4	0.833	SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
3L	15837561	3L_15837561_SNP [dm3] 3L_15844461_SNP [dm6]	C	T	4.312e^-4	0.833	UPSTREAM mir-263b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16815156	2R_16815156_SNP [dm3] 2R_20927651_SNP [dm6]	A	T	4.315e^-4	0.833	INTRON Rx
X	13931381	X_13931381_SNP [dm3] X_14037348_SNP [dm6]	C	T	4.315e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6565298	X_6565298_DEL [dm3] X_6671265_DEL [dm6]	AA	A	4.318e^-4	0.833	UTR_3_PRIME CG3198
2R	12017761	2R_12017761_SNP [dm3] 2R_16130256_SNP [dm6]	T	C	4.353e^-4	0.836	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27189997	3R_27189997_SNP [dm3] 3R_31364275_SNP [dm6]	C	A	4.354e^-4	0.836	INTRON CG34347
2L	15935482	2L_15935482_SNP [dm3] 2L_15935482_SNP [dm6]	C	A	4.354e^-4	0.836	INTRON beat-Ib
3R	19454092	3R_19454092_SNP [dm3] 3R_23628370_SNP [dm6]	T	C	4.359e^-4	0.836	INTRON CG31145
3L	4028606	3L_4028606_SNP [dm3] 3L_4028606_SNP [dm6]	G	A	4.360e^-4	0.836	UTR_5_PRIME Gr64b & 1 other DOWNSTREAM Gr64a	TF binding site mE1_TFBS_inv
3R	19292177	3R_19292177_SNP [dm3] 3R_23466455_SNP [dm6]	T	A	4.361e^-4	0.836	INTRON CG4374
3L	20672283	3L_20672283_SNP [dm3] 3L_20679183_SNP [dm6]	C	T	4.373e^-4	0.836	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8060277	3R_8060277_SNP [dm3] 3R_12234555_SNP [dm6]	C	T	4.374e^-4	0.836	SYNONYMOUS_CODING Cyp313a5 DOWNSTREAM Cyp313a2
2R	6353159	2R_6353159_SNP [dm3] 2R_10465654_SNP [dm6]	G	A	4.376e^-4	0.836	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12568663	2R_12568663_SNP [dm3] 2R_16681158_SNP [dm6]	T	C	4.381e^-4	0.836	SYNONYMOUS_CODING CG30463
2R	10320445	2R_10320445_SNP [dm3] 2R_14432940_SNP [dm6]	T	A	4.391e^-4	0.836	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4314082	3L_4314082_SNP [dm3] 3L_4314082_SNP [dm6]	G	A	4.394e^-4	0.836	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6353835	2R_6353835_SNP [dm3] 2R_10466330_SNP [dm6]	A	G	4.394e^-4	0.836	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27224956	3R_27224956_SNP [dm3] 3R_31399234_SNP [dm6]	T	C	4.398e^-4	0.836	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad
X	20394459	X_20394459_INS [dm3] X_20523432_INS [dm6]	A	ATA	4.422e^-4	0.836	INTRON Tak1
X	13010800	X_13010800_SNP [dm3] X_13116767_SNP [dm6]	A	T	4.428e^-4	0.836	INTRON CG42237
2R	18727775	2R_18727775_SNP [dm3] 2R_22840252_SNP [dm6]	G	C	4.433e^-4	0.836	UPSTREAM CG9826 DOWNSTREAM CG9825 INTERGENIC
2R	14783045	2R_14783045_SNP [dm3] 2R_18895540_SNP [dm6]	C	G	4.438e^-4	0.836	INTRON sano
2R	8149528	2R_8149528_SNP [dm3] 2R_12262023_SNP [dm6]	C	T	4.441e^-4	0.836	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	16013819	3L_16013819_SNP [dm3] 3L_16020719_SNP [dm6]	T	A	4.444e^-4	0.836	EXON CR43949	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19292289	3R_19292289_SNP [dm3] 3R_23466567_SNP [dm6]	C	T	4.446e^-4	0.836	INTRON CG4374
2L	790733	2L_790733_SNP [dm3] 2L_790733_SNP [dm6]	G	A	4.449e^-4	0.836	START_GAINED Pkg21D UTR_5_PRIME Pkg21D	TF binding site mE1_TFBS_cad
3R	27189989	3R_27189989_SNP [dm3] 3R_31364267_SNP [dm6]	G	C	4.450e^-4	0.836	INTRON CG34347
2R	8897449	2R_8897449_DEL [dm3] 2R_13009944_DEL [dm6]	ATTACGCTATCGAATTGCAT...	A	4.452e^-4	0.836	INTERGENIC
3R	23600036	3R_23600036_SNP [dm3] 3R_27774314_SNP [dm6]	C	A	4.457e^-4	0.836	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	9865214	2R_9865214_SNP [dm3] 2R_13977709_SNP [dm6]	T	A	4.459e^-4	0.836	SYNONYMOUS_CODING CG6701	TF binding site BDTNP1_TFBS_twi
2L	18303661	2L_18303661_SNP [dm3] 2L_18303661_SNP [dm6]	A	C	4.460e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16305643	3R_16305643_SNP [dm3] 3R_20479921_SNP [dm6]	G	T	4.461e^-4	0.836	INTRON Gfrl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.615e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1996 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9868366	3L_9868366_SNP [dm3] 3L_9875266_SNP [dm6]	G	C	5.311e^-8	0.07	UPSTREAM CR45406 INTERGENIC
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	7.505e^-8	0.07	UPSTREAM CR45406 INTERGENIC
3L	9868459	3L_9868459_DEL [dm3] 3L_9875359_DEL [dm6]	AA	A	1.597e^-7	0.08	UPSTREAM CR45406 INTERGENIC
3L	9868462	3L_9868462_SNP [dm3] 3L_9875362_SNP [dm6]	C	T	1.717e^-7	0.08	UPSTREAM CR45406 INTERGENIC
3R	7760718	3R_7760718_DEL [dm3] 3R_11934996_DEL [dm6]	ACATTTCTCTCAATTA...	A	4.947e^-7	0.186	INTRON Cad87A
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	1.397e^-6	0.432	INTRON Cad87A
3L	4214246	3L_4214246_SNP [dm3] 3L_4214246_SNP [dm6]	T	C	1.614e^-6	0.432	INTRON CG43367	TF binding site mE1_TFBS_cad
3L	9868331	3L_9868331_DEL [dm3] 3L_9875231_DEL [dm6]	TTTAA	T	1.906e^-6	0.447	UPSTREAM CR45406 INTERGENIC
3R	15875516	3R_15875516_SNP [dm3] 3R_20049794_SNP [dm6]	A	G	2.318e^-6	0.483	UTR_5_PRIME CG17193
3L	9868438	3L_9868438_INS [dm3] 3L_9875338_INS [dm6]	A	ATGAAGC	3.042e^-6	0.57	UPSTREAM CR45406 INTERGENIC
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	3.884e^-6	0.585	NON_SYNONYMOUS_CODING CG17360
2R	14768699	2R_14768699_SNP [dm3] 2R_18881194_SNP [dm6]	T	C	4.055e^-6	0.585	INTRON sano
X	16594435	X_16594435_SNP [dm3] X_16700402_SNP [dm6]	G	A	4.057e^-6	0.585	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
X	16594436	X_16594436_SNP [dm3] X_16700403_SNP [dm6]	A	G	4.460e^-6	0.597	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
2L	11331705	2L_11331705_SNP [dm3] 2L_11331705_SNP [dm6]	A	T	5.074e^-6	0.602	DOWNSTREAM CR44584 INTERGENIC
3R	7760597	3R_7760597_SNP [dm3] 3R_11934875_SNP [dm6]	A	C	5.212e^-6	0.602	INTRON Cad87A
3L	9866577	3L_9866577_SNP [dm3] 3L_9873477_SNP [dm6]	C	T	5.458e^-6	0.602	INTERGENIC
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	5.953e^-6	0.611	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	6.425e^-6	0.611	INTRON Mhc
2R	17646587	2R_17646587_SNP [dm3] 2R_21759082_SNP [dm6]	G	C	6.854e^-6	0.611	INTERGENIC
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	6.908e^-6	0.611	INTRON Mhc
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	7.758e^-6	0.611	INTRON Mhc
3L	14842595	3L_14842595_SNP [dm3] 3L_14849495_SNP [dm6]	G	C	8.334e^-6	0.611	INTRON CG17839
3L	4214221	3L_4214221_SNP [dm3] 3L_4214221_SNP [dm6]	A	T	8.807e^-6	0.611	INTRON CG43367	TF binding site mE1_TFBS_cad
3R	7762418	3R_7762418_SNP [dm3] 3R_11936696_SNP [dm6]	T	C	9.218e^-6	0.611	INTRON Cad87A
3L	11009908	3L_11009908_SNP [dm3] 3L_11016808_SNP [dm6]	T	G	9.221e^-6	0.611	INTERGENIC
3L	9865397	3L_9865397_SNP [dm3] 3L_9872297_SNP [dm6]	C	A	9.231e^-6	0.611	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	3452470	3L_3452470_SNP [dm3] 3L_3452470_SNP [dm6]	A	G	9.696e^-6	0.611	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7749863	3L_7749863_SNP [dm3] 3L_7756763_SNP [dm6]	A	C	9.850e^-6	0.611	UTR_5_PRIME CG32373 INTRON CG32373
2L	18611546	2L_18611546_SNP [dm3] 2L_18611546_SNP [dm6]	G	A	1.031e^-5	0.611	INTRON Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9865395	3L_9865395_SNP [dm3] 3L_9872295_SNP [dm6]	C	T	1.064e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	9872333	3L_9872333_SNP [dm3] 3L_9879233_SNP [dm6]	A	G	1.123e^-5	0.611	UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	9872339	3L_9872339_SNP [dm3] 3L_9879239_SNP [dm6]	C	T	1.123e^-5	0.611	START_GAINED CG34382 UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	2652166	3L_2652166_SNP [dm3] 3L_2652166_SNP [dm6]	A	G	1.156e^-5	0.611	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
2L	17018849	2L_17018849_SNP [dm3] 2L_17018849_SNP [dm6]	T	A	1.184e^-5	0.611	UPSTREAM CR45462 INTERGENIC
3R	23811543	3R_23811543_SNP [dm3] 3R_27985821_SNP [dm6]	C	A	1.197e^-5	0.611	INTRON betaTub97EF
2R	14597731	2R_14597731_SNP [dm3] 2R_18710226_SNP [dm6]	G	A	1.210e^-5	0.611	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2R	6243686	2R_6243686_SNP [dm3] 2R_10356181_SNP [dm6]	A	G	1.277e^-5	0.611	UTR_3_PRIME CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	1.290e^-5	0.611	INTRON fra
X	16982931	X_16982931_SNP [dm3] X_17088898_SNP [dm6]	T	C	1.304e^-5	0.611	INTERGENIC
3R	7024489	3R_7024489_SNP [dm3] 3R_11198767_SNP [dm6]	T	C	1.345e^-5	0.615	INTRON cu	TF binding site mE1_TFBS_Trl
2R	16362521	2R_16362521_SNP [dm3] 2R_20475016_SNP [dm6]	A	T	1.422e^-5	0.626	INTRON CG12484
3L	4214236	3L_4214236_SNP [dm3] 3L_4214236_SNP [dm6]	A	G	1.436e^-5	0.626	INTRON CG43367	TF binding site mE1_TFBS_cad
2R	5390807	2R_5390807_SNP [dm3] 2R_9503302_SNP [dm6]	C	G	1.516e^-5	0.646	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC
2R	9900209	2R_9900209_SNP [dm3] 2R_14012704_SNP [dm6]	G	A	1.599e^-5	0.666	INTRON mam
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	1.635e^-5	0.666	INTRON CR44833	regulatory region REDfly_CRMs
3L	9868700	3L_9868700_SNP [dm3] 3L_9875600_SNP [dm6]	T	G	1.711e^-5	0.673	UPSTREAM CR45406 INTERGENIC
2R	9451633	2R_9451633_SNP [dm3] 2R_13564128_SNP [dm6]	A	C	1.724e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	9299168	2L_9299168_SNP [dm3] 2L_9299168_SNP [dm6]	T	A	1.942e^-5	0.697	UTR_3_PRIME Ggamma30A
3L	14360989	3L_14360989_DEL [dm3] 3L_14367889_DEL [dm6]	TGCA	T	1.947e^-5	0.697	UTR_3_PRIME fz
3L	7196193	3L_7196193_SNP [dm3] 3L_7203093_SNP [dm6]	A	T	1.970e^-5	0.697	INTERGENIC
3L	7196200	3L_7196200_SNP [dm3] 3L_7203100_SNP [dm6]	C	A	1.970e^-5	0.697	INTERGENIC
3L	7196203	3L_7196203_SNP [dm3] 3L_7203103_SNP [dm6]	G	A	1.970e^-5	0.697	INTERGENIC
X	17921789	X_17921789_SNP [dm3] X_18027756_SNP [dm6]	A	C	2.029e^-5	0.705	INTRON Sh & 1 other
3L	13893337	3L_13893337_SNP [dm3] 3L_13900237_SNP [dm6]	A	G	2.083e^-5	0.71	INTRON dysc
3R	21614780	3R_21614780_SNP [dm3] 3R_25789058_SNP [dm6]	G	A	2.184e^-5	0.727	NON_SYNONYMOUS_CODING CG31380 DOWNSTREAM CG31093	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23287649	3R_23287649_SNP [dm3] 3R_27461927_SNP [dm6]	T	C	2.244e^-5	0.727	INTERGENIC
X	10388656	X_10388656_SNP [dm3] X_10494623_SNP [dm6]	G	C	2.250e^-5	0.727	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7024564	3R_7024564_SNP [dm3] 3R_11198842_SNP [dm6]	G	T	2.318e^-5	0.727	INTRON cu
2R	6386520	2R_6386520_SNP [dm3] 2R_10499015_SNP [dm6]	A	T	2.326e^-5	0.727	INTRON lola
3L	9873547	3L_9873547_SNP [dm3] 3L_9880447_SNP [dm6]	C	T	2.484e^-5	0.764	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	1340458	2L_1340458_INS [dm3] 2L_1340458_INS [dm6]	T	TCCTTT	2.704e^-5	0.818	DOWNSTREAM CG33923 INTERGENIC
2R	9524449	2R_9524449_SNP [dm3] 2R_13636944_SNP [dm6]	T	C	2.937e^-5	0.855	INTRON fas
2R	9524450	2R_9524450_SNP [dm3] 2R_13636945_SNP [dm6]	G	C	2.937e^-5	0.855	INTRON fas
3L	4214218	3L_4214218_SNP [dm3] 3L_4214218_SNP [dm6]	A	C	2.963e^-5	0.855	INTRON CG43367	TF binding site mE1_TFBS_cad
2R	9265943	2R_9265943_SNP [dm3] 2R_13378438_SNP [dm6]	C	G	3.033e^-5	0.862	UPSTREAM CG10814 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23883088	3R_23883088_SNP [dm3] 3R_28057366_SNP [dm6]	A	G	3.093e^-5	0.864	INTRON CG34362
3R	24341429	3R_24341429_SNP [dm3] 3R_28515707_SNP [dm6]	A	G	3.174e^-5	0.864	INTRON Dhc98D
3L	1805266	3L_1805266_SNP [dm3] 3L_1805266_SNP [dm6]	A	G	3.184e^-5	0.864	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
3L	4214238	3L_4214238_SNP [dm3] 3L_4214238_SNP [dm6]	A	C	3.227e^-5	0.864	INTRON CG43367	TF binding site mE1_TFBS_cad
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	3.314e^-5	0.864	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	9995471	3L_9995471_SNP [dm3] 3L_10002371_SNP [dm6]	T	G	3.316e^-5	0.864	INTRON dpr6
3L	17285906	3L_17285906_SNP [dm3] 3L_17292806_SNP [dm6]	A	T	3.411e^-5	0.868	INTERGENIC
3R	26331619	3R_26331619_SNP [dm3] 3R_30505897_SNP [dm6]	T	A	3.427e^-5	0.868	UPSTREAM CG15539 & 2 others INTERGENIC
3R	24341623	3R_24341623_SNP [dm3] 3R_28515901_SNP [dm6]	T	C	3.526e^-5	0.882	INTRON Dhc98D
3L	9864148	3L_9864148_SNP [dm3] 3L_9871048_SNP [dm6]	A	T	3.708e^-5	0.902	DOWNSTREAM CG8108 INTERGENIC
X	10921445	X_10921445_SNP [dm3] X_11027412_SNP [dm6]	G	C	3.740e^-5	0.902	INTRON CG42339
3L	7548817	3L_7548817_SNP [dm3] 3L_7555717_SNP [dm6]	T	G	3.843e^-5	0.902	DOWNSTREAM CG14837 INTERGENIC
3R	6702555	3R_6702555_INS [dm3] 3R_10876833_INS [dm6]	T	TGTATGACCTAATTGTT...	3.852e^-5	0.902	INTRON Sodh-2 EXON CR45195	TF binding site mE1_TFBS_cad
2L	11332616	2L_11332616_DEL [dm3] 2L_11332616_DEL [dm6]	AAGGA	A	3.881e^-5	0.902	INTRON CR44584
3R	26675653	3R_26675653_SNP [dm3] 3R_30849931_SNP [dm6]	G	C	3.897e^-5	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	16105103	2R_16105103_SNP [dm3] 2R_20217598_SNP [dm6]	A	T	3.947e^-5	0.903	INTERGENIC
3R	12928681	3R_12928681_SNP [dm3] 3R_17102959_SNP [dm6]	G	T	4.036e^-5	0.912	INTRON cher
3L	9865768	3L_9865768_SNP [dm3] 3L_9872668_SNP [dm6]	A	T	4.133e^-5	0.912	INTERGENIC
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	4.227e^-5	0.912	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15328901	3R_15328901_SNP [dm3] 3R_19503179_SNP [dm6]	G	C	4.276e^-5	0.912	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	4.306e^-5	0.912	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
X	8524051	X_8524051_SNP [dm3] X_8630018_SNP [dm6]	T	C	4.367e^-5	0.912	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad
2L	2423899	2L_2423899_SNP [dm3] 2L_2423899_SNP [dm6]	C	A	4.426e^-5	0.912	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18729806	3L_18729806_SNP [dm3] 3L_18736706_SNP [dm6]	T	C	4.467e^-5	0.912	INTERGENIC
3L	17285884	3L_17285884_SNP [dm3] 3L_17292784_SNP [dm6]	T	G	4.478e^-5	0.912	INTERGENIC
2R	14272455	2R_14272455_INS [dm3] 2R_18384950_INS [dm6]	A	AA	4.530e^-5	0.912	UTR_3_PRIME CG15067 DOWNSTREAM CG15067 & 2 others	TF binding site mE1_TFBS_cad
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	4.566e^-5	0.912	DOWNSTREAM CG1339 & 1 other INTERGENIC
3L	22416708	3L_22416708_SNP [dm3] 3L_22423608_SNP [dm6]	G	A	4.572e^-5	0.912	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10526595	3L_10526595_SNP [dm3] 3L_10533495_SNP [dm6]	T	C	4.632e^-5	0.914	INTRON A2bp1
3R	12928526	3R_12928526_SNP [dm3] 3R_17102804_SNP [dm6]	G	A	4.712e^-5	0.917	INTRON cher
2L	8985091	2L_8985091_SNP [dm3] 2L_8985091_SNP [dm6]	A	C	4.871e^-5	0.917	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985102	2L_8985102_SNP [dm3] 2L_8985102_SNP [dm6]	A	G	4.871e^-5	0.917	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23814074	3R_23814074_SNP [dm3] 3R_27988352_SNP [dm6]	A	G	4.925e^-5	0.917	UTR_5_PRIME betaTub97EF	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9160592	3L_9160592_SNP [dm3] 3L_9167492_SNP [dm6]	A	T	5.351e^-5	0.917	INTRON Rdl
3R	5885708	3R_5885708_SNP [dm3] 3R_10059986_SNP [dm6]	T	A	5.424e^-5	0.917	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2R	14597887	2R_14597887_SNP [dm3] 2R_18710382_SNP [dm6]	C	T	5.433e^-5	0.917	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2R	14597751	2R_14597751_SNP [dm3] 2R_18710246_SNP [dm6]	G	A	5.630e^-5	0.917	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	5.645e^-5	0.917	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	12928947	3R_12928947_SNP [dm3] 3R_17103225_SNP [dm6]	C	T	5.731e^-5	0.917	INTRON cher
X	14665841	X_14665841_SNP [dm3] X_14771808_SNP [dm6]	A	G	5.746e^-5	0.917	INTERGENIC
3L	9865386	3L_9865386_INS [dm3] 3L_9872286_INS [dm6]	T	TATC	5.785e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	5.817e^-5	0.917	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
2R	14597743	2R_14597743_SNP [dm3] 2R_18710238_SNP [dm6]	G	A	5.820e^-5	0.917	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2R	8496792	2R_8496792_SNP [dm3] 2R_12609287_SNP [dm6]	C	G	5.864e^-5	0.917	SYNONYMOUS_CODING Amph INTRON Amph
2R	13940881	2R_13940881_SNP [dm3] 2R_18053376_SNP [dm6]	A	T	5.899e^-5	0.917	INTRON CG10911	TF binding site mE1_TFBS_cad
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	5.919e^-5	0.917	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15822634	2R_15822634_SNP [dm3] 2R_19935129_SNP [dm6]	C	T	5.968e^-5	0.917	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1236322	3L_1236322_SNP [dm3] 3L_1236322_SNP [dm6]	T	A	5.977e^-5	0.917	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2423809	2L_2423809_SNP [dm3] 2L_2423809_SNP [dm6]	G	A	6.076e^-5	0.917	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9211736	3L_9211736_SNP [dm3] 3L_9218636_SNP [dm6]	A	C	6.241e^-5	0.917	INTERGENIC
2R	12013949	2R_12013949_SNP [dm3] 2R_16126444_SNP [dm6]	C	T	6.324e^-5	0.917	INTRON spin	TF binding site BDTNP1_TFBS_dl
2L	6857181	2L_6857181_SNP [dm3] 2L_6857181_SNP [dm6]	C	T	6.460e^-5	0.917	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
X	19371964	X_19371964_SNP [dm3] X_19477931_SNP [dm6]	G	A	6.674e^-5	0.917	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24339456	3R_24339456_SNP [dm3] 3R_28513734_SNP [dm6]	G	T	6.699e^-5	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6758075	2R_6758075_SNP [dm3] 2R_10870570_SNP [dm6]	T	A	6.858e^-5	0.917	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15959414	2R_15959414_SNP [dm3] 2R_20071909_SNP [dm6]	A	G	6.956e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16594179	X_16594179_SNP [dm3] X_16700146_SNP [dm6]	T	C	7.053e^-5	0.917	UTR_5_PRIME CG9676 DOWNSTREAM spheroide INTRON CG4678
3R	25952801	3R_25952801_SNP [dm3] 3R_30127079_SNP [dm6]	T	C	7.108e^-5	0.917	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7545308	X_7545308_SNP [dm3] X_7651275_SNP [dm6]	G	C	7.284e^-5	0.917	INTRON ct
3R	19294000	3R_19294000_SNP [dm3] 3R_23468278_SNP [dm6]	T	C	7.334e^-5	0.917	INTRON CG4374
3R	14672708	3R_14672708_SNP [dm3] 3R_18846986_SNP [dm6]	G	A	7.370e^-5	0.917	INTRON CG18208
2R	12459530	2R_12459530_SNP [dm3] 2R_16572025_SNP [dm6]	T	G	7.385e^-5	0.917	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	14598399	2R_14598399_SNP [dm3] 2R_18710894_SNP [dm6]	C	T	7.402e^-5	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18615685	2L_18615685_SNP [dm3] 2L_18615685_SNP [dm6]	C	T	7.402e^-5	0.917	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9757209	2L_9757209_SNP [dm3] 2L_9757209_SNP [dm6]	T	C	7.427e^-5	0.917	INTERGENIC
3R	21636906	3R_21636906_SNP [dm3] 3R_25811184_SNP [dm6]	A	C	7.635e^-5	0.917	UTR_5_PRIME CG5024 UPSTREAM CG17770 & 1 other
2R	14598384	2R_14598384_SNP [dm3] 2R_18710879_SNP [dm6]	T	G	7.644e^-5	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9864142	3L_9864142_SNP [dm3] 3L_9871042_SNP [dm6]	C	T	7.725e^-5	0.917	DOWNSTREAM CG8108 INTERGENIC
3L	9865391	3L_9865391_SNP [dm3] 3L_9872291_SNP [dm6]	T	G	7.758e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	16677373	2R_16677373_SNP [dm3] 2R_20789868_SNP [dm6]	G	C	7.767e^-5	0.917	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	7.837e^-5	0.917	DOWNSTREAM CG43760 INTERGENIC
2R	14768442	2R_14768442_SNP [dm3] 2R_18880937_SNP [dm6]	C	G	7.957e^-5	0.917	INTRON sano
3L	7592913	3L_7592913_SNP [dm3] 3L_7599813_SNP [dm6]	C	T	7.960e^-5	0.917	INTRON CG33275
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	7.969e^-5	0.917	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2L	15775835	2L_15775835_SNP [dm3] 2L_15775835_SNP [dm6]	T	C	7.976e^-5	0.917	DOWNSTREAM CG43760 INTERGENIC
3L	9160590	3L_9160590_SNP [dm3] 3L_9167490_SNP [dm6]	T	G	8.004e^-5	0.917	INTRON Rdl
3L	9870446	3L_9870446_SNP [dm3] 3L_9877346_SNP [dm6]	A	G	8.218e^-5	0.917	DOWNSTREAM CR45406 INTERGENIC
2R	14598373	2R_14598373_SNP [dm3] 2R_18710868_SNP [dm6]	A	T	8.239e^-5	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8040591	3L_8040591_SNP [dm3] 3L_8047491_SNP [dm6]	G	T	8.252e^-5	0.917	INTRON nmo	TF binding site mE1_TFBS_cad
2R	15025544	2R_15025544_SNP [dm3] 2R_19138039_SNP [dm6]	G	T	8.253e^-5	0.917	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14842474	3L_14842474_SNP [dm3] 3L_14849374_SNP [dm6]	G	C	8.263e^-5	0.917	INTRON CG17839
3L	5987027	3L_5987027_SNP [dm3] 3L_5993927_SNP [dm6]	A	G	8.310e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13940679	2R_13940679_SNP [dm3] 2R_18053174_SNP [dm6]	C	A	8.321e^-5	0.917	SYNONYMOUS_CODING CG10911	TF binding site mE1_TFBS_cad
2R	9451603	2R_9451603_SNP [dm3] 2R_13564098_SNP [dm6]	G	T	8.357e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	14598375	2R_14598375_SNP [dm3] 2R_18710870_SNP [dm6]	A	T	8.527e^-5	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13719438	2R_13719438_SNP [dm3] 2R_17831933_SNP [dm6]	T	A	8.656e^-5	0.917	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12857969	3L_12857969_SNP [dm3] 3L_12864869_SNP [dm6]	A	C	8.656e^-5	0.917	INTERGENIC
2R	9522022	2R_9522022_SNP [dm3] 2R_13634517_SNP [dm6]	T	C	8.701e^-5	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
2L	5147387	2L_5147387_SNP [dm3] 2L_5147387_SNP [dm6]	T	C	8.701e^-5	0.917	INTRON Msp300
3R	11309739	3R_11309739_SNP [dm3] 3R_15484017_SNP [dm6]	C	T	8.726e^-5	0.917	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
3L	5987047	3L_5987047_SNP [dm3] 3L_5993947_SNP [dm6]	G	T	8.745e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19226230	2L_19226230_DEL [dm3] 2L_19226230_DEL [dm6]	GGGAGGTGG	G	8.752e^-5	0.917	INTERGENIC
2R	12139146	2R_12139146_SNP [dm3] 2R_16251641_SNP [dm6]	G	T	8.833e^-5	0.917	INTRON CngA
2R	11458435	2R_11458435_SNP [dm3] 2R_15570930_SNP [dm6]	G	A	8.857e^-5	0.917	SYNONYMOUS_CODING Cdk5 UPSTREAM CG30466 INTRON CG30466	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16123842	2R_16123842_SNP [dm3] 2R_20236337_SNP [dm6]	T	C	8.958e^-5	0.917	UTR_5_PRIME CG11099 UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other
2R	14598774	2R_14598774_SNP [dm3] 2R_18711269_SNP [dm6]	C	T	9.060e^-5	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC
3L	11350664	3L_11350664_SNP [dm3] 3L_11357564_SNP [dm6]	A	G	9.131e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18589261	3R_18589261_SNP [dm3] 3R_22763539_SNP [dm6]	A	T	9.169e^-5	0.917	NON_SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
X	12849231	X_12849231_INS [dm3] X_12955198_INS [dm6]	A	AGAAACACA	9.182e^-5	0.917	INTRON hec
2R	12583718	2R_12583718_SNP [dm3] 2R_16696213_SNP [dm6]	C	A	9.298e^-5	0.917	INTRON CG30463
3R	24739675	3R_24739675_SNP [dm3] 3R_28913953_SNP [dm6]	C	T	9.322e^-5	0.917	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21624815	3R_21624815_SNP [dm3] 3R_25799093_SNP [dm6]	G	C	9.363e^-5	0.917	INTERGENIC
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	9.383e^-5	0.917	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18615659	2L_18615659_SNP [dm3] 2L_18615659_SNP [dm6]	G	C	9.395e^-5	0.917	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21313050	3R_21313050_SNP [dm3] 3R_25487328_SNP [dm6]	C	T	9.565e^-5	0.917	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15043765	3L_15043765_SNP [dm3] 3L_15050665_SNP [dm6]	T	G	9.733e^-5	0.917	NON_SYNONYMOUS_CODING CG12310 UPSTREAM CG18581 DOWNSTREAM CG43679 INTRON Sytbeta
2R	8500445	2R_8500445_SNP [dm3] 2R_12612940_SNP [dm6]	A	C	9.772e^-5	0.917	DOWNSTREAM Amph INTRON Galphaq & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2L	17017889	2L_17017889_SNP [dm3] 2L_17017889_SNP [dm6]	G	A	9.850e^-5	0.917	EXON CR45462
X	10415141	X_10415141_DEL [dm3] X_10521108_DEL [dm6]	CC	C	9.914e^-5	0.917	INTRON spri
2L	20814039	2L_20814039_SNP [dm3] 2L_20814039_SNP [dm6]	C	A	9.994e^-5	0.917	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3R	14380904	3R_14380904_SNP [dm3] 3R_18555182_SNP [dm6]	A	G	1.001e^-4	0.917	INTERGENIC
2L	20811680	2L_20811680_SNP [dm3] 2L_20811680_SNP [dm6]	T	C	1.007e^-4	0.917	INTRON CG9328
2L	11330131	2L_11330131_INS [dm3] 2L_11330131_INS [dm6]	TG	CTAGC	1.011e^-4	0.917	INTERGENIC
3R	5885676	3R_5885676_SNP [dm3] 3R_10059954_SNP [dm6]	G	C	1.014e^-4	0.917	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	1.016e^-4	0.917	INTERGENIC
3L	11100939	3L_11100939_SNP [dm3] 3L_11107839_SNP [dm6]	A	G	1.018e^-4	0.917	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3R	24334197	3R_24334197_SNP [dm3] 3R_28508475_SNP [dm6]	G	A	1.021e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	1.029e^-4	0.917	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
3L	17235864	3L_17235864_SNP [dm3] 3L_17242764_SNP [dm6]	G	T	1.034e^-4	0.917	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
3R	25395459	3R_25395459_INS [dm3] 3R_29569737_INS [dm6]	T	TT	1.035e^-4	0.917	INTERGENIC
2R	14090542	2R_14090542_SNP [dm3] 2R_18203037_SNP [dm6]	G	A	1.037e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14893012	X_14893012_INS [dm3] X_14998979_INS [dm6]	C	CCTGGTGATGGATC...	1.038e^-4	0.917	UTR_3_PRIME eag INTRON eag
2L	16153509	2L_16153509_SNP [dm3] 2L_16153509_SNP [dm6]	T	C	1.042e^-4	0.917	INTERGENIC
2R	10826363	2R_10826363_SNP [dm3] 2R_14938858_SNP [dm6]	A	C	1.052e^-4	0.917	INTRON Lap1
2R	8841146	2R_8841146_SNP [dm3] 2R_12953641_SNP [dm6]	A	C	1.056e^-4	0.917	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8690701	3L_8690701_SNP [dm3] 3L_8697601_SNP [dm6]	G	T	1.058e^-4	0.917	INTERGENIC
2R	9891867	2R_9891867_SNP [dm3] 2R_14004362_SNP [dm6]	C	T	1.059e^-4	0.917	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10716310	2L_10716310_SNP [dm3] 2L_10716310_SNP [dm6]	C	T	1.068e^-4	0.917	INTERGENIC
2R	11177051	2R_11177051_SNP [dm3] 2R_15289546_SNP [dm6]	T	C	1.082e^-4	0.917	INTRON Trpm
2R	14768761	2R_14768761_SNP [dm3] 2R_18881256_SNP [dm6]	T	C	1.103e^-4	0.917	INTRON sano
3R	19404444	3R_19404444_SNP [dm3] 3R_23578722_SNP [dm6]	G	T	1.103e^-4	0.917	SYNONYMOUS_CODING beat-IV
2L	5147371	2L_5147371_SNP [dm3] 2L_5147371_SNP [dm6]	G	A	1.127e^-4	0.917	INTRON Msp300
2L	20825863	2L_20825863_SNP [dm3] 2L_20825863_SNP [dm6]	C	T	1.128e^-4	0.917	SYNONYMOUS_CODING CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8525229	2R_8525229_SNP [dm3] 2R_12637724_SNP [dm6]	A	G	1.128e^-4	0.917	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2799809	3L_2799809_SNP [dm3] 3L_2799809_SNP [dm6]	G	T	1.135e^-4	0.917	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	9872987	3L_9872987_SNP [dm3] 3L_9879887_SNP [dm6]	T	C	1.142e^-4	0.917	INTRON CG34382
2L	15220604	2L_15220604_SNP [dm3] 2L_15220604_SNP [dm6]	A	G	1.148e^-4	0.917	INTERGENIC
3R	24739635	3R_24739635_SNP [dm3] 3R_28913913_SNP [dm6]	A	G	1.156e^-4	0.917	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13894366	3L_13894366_SNP [dm3] 3L_13901266_SNP [dm6]	A	T	1.163e^-4	0.917	INTRON dysc
3R	23498569	3R_23498569_SNP [dm3] 3R_27672847_SNP [dm6]	T	C	1.176e^-4	0.917	INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	7115084	3R_7115084_SNP [dm3] 3R_11289362_SNP [dm6]	T	A	1.183e^-4	0.917	INTRON CR31386
3L	8694481	3L_8694481_SNP [dm3] 3L_8701381_SNP [dm6]	C	T	1.196e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3185866	2L_3185866_INS [dm3] 2L_3185866_INS [dm6]	A	AA	1.200e^-4	0.917	INTRON CG34393
2R	18017451	2R_18017451_SNP [dm3] 2R_22129946_SNP [dm6]	C	A	1.218e^-4	0.917	DOWNSTREAM CG34205 INTRON NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11630423	3L_11630423_SNP [dm3] 3L_11637323_SNP [dm6]	A	G	1.219e^-4	0.917	INTRON CG32091
3R	24339497	3R_24339497_INS [dm3] 3R_28513775_INS [dm6]	G	GAAGGG	1.220e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9067552	X_9067552_SNP [dm3] X_9173519_SNP [dm6]	G	T	1.221e^-4	0.917	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16219218	2L_16219218_SNP [dm3] 2L_16219218_SNP [dm6]	G	T	1.222e^-4	0.917	INTERGENIC
X	12345872	X_12345872_SNP [dm3] X_12451839_SNP [dm6]	A	G	1.227e^-4	0.917	INTRON Pkcdelta
3R	18588745	3R_18588745_SNP [dm3] 3R_22763023_SNP [dm6]	T	C	1.230e^-4	0.917	SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
3L	908738	3L_908738_SNP [dm3] 3L_908738_SNP [dm6]	T	A	1.232e^-4	0.917	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	12251344	3R_12251344_SNP [dm3] 3R_16425622_SNP [dm6]	C	G	1.242e^-4	0.917	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3L	4327734	3L_4327734_SNP [dm3] 3L_4327734_SNP [dm6]	G	A	1.251e^-4	0.917	INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11945189	3R_11945189_SNP [dm3] 3R_16119467_SNP [dm6]	C	A	1.251e^-4	0.917	INTRON Sb
X	7091931	X_7091931_SNP [dm3] X_7197898_SNP [dm6]	T	C	1.253e^-4	0.917	INTRON CR44357 & 1 other
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	1.257e^-4	0.917	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14272477	2R_14272477_DEL [dm3] 2R_18384972_DEL [dm6]	GATT	A	1.260e^-4	0.917	UTR_3_PRIME CG15067 DOWNSTREAM CG15067 & 2 others	TF binding site mE1_TFBS_cad
3L	9865928	3L_9865928_SNP [dm3] 3L_9872828_SNP [dm6]	T	A	1.272e^-4	0.917	INTERGENIC
2L	9299247	2L_9299247_SNP [dm3] 2L_9299247_SNP [dm6]	T	G	1.275e^-4	0.917	UTR_3_PRIME Ggamma30A
X	13562404	X_13562404_SNP [dm3] X_13668371_SNP [dm6]	C	T	1.291e^-4	0.917	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	757051	2L_757051_SNP [dm3] 2L_757051_SNP [dm6]	G	A	1.297e^-4	0.917	INTRON GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	14835183	3L_14835183_DEL [dm3] 3L_14842083_DEL [dm6]	AGTTCCGA	A	1.300e^-4	0.917	INTRON CG17839
2R	11470728	2R_11470728_SNP [dm3] 2R_15583223_SNP [dm6]	A	T	1.309e^-4	0.917	INTERGENIC
X	21101964	X_21101964_SNP [dm3] X_21230937_SNP [dm6]	G	A	1.310e^-4	0.917	DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521
3L	4177827	3L_4177827_SNP [dm3] 3L_4177827_SNP [dm6]	G	T	1.319e^-4	0.917	UTR_5_PRIME Teh4 INTRON CG18675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18640477	3L_18640477_SNP [dm3] 3L_18647377_SNP [dm6]	C	T	1.326e^-4	0.917	INTRON MYPT-75D
2R	14597433	2R_14597433_SNP [dm3] 2R_18709928_SNP [dm6]	G	A	1.333e^-4	0.917	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11100840	3L_11100840_SNP [dm3] 3L_11107740_SNP [dm6]	C	G	1.339e^-4	0.917	UPSTREAM CG12522 & 1 other INTERGENIC
3L	2008226	3L_2008226_SNP [dm3] 3L_2008226_SNP [dm6]	G	T	1.341e^-4	0.917	DOWNSTREAM CR44535 INTERGENIC
2R	14856504	2R_14856504_SNP [dm3] 2R_18968999_SNP [dm6]	C	T	1.354e^-4	0.917	DOWNSTREAM prod INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9522028	2R_9522028_SNP [dm3] 2R_13634523_SNP [dm6]	G	T	1.355e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	1.361e^-4	0.917	INTRON fz
3L	9868654	3L_9868654_INS [dm3] 3L_9875554_INS [dm6]	A	AC	1.362e^-4	0.917	UPSTREAM CR45406 INTERGENIC
X	3207337	X_3207337_SNP [dm3] X_3313304_SNP [dm6]	A	T	1.364e^-4	0.917	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
2L	18615686	2L_18615686_SNP [dm3] 2L_18615686_SNP [dm6]	A	C	1.379e^-4	0.917	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10143433	3R_10143433_SNP [dm3] 3R_14317711_SNP [dm6]	T	C	1.387e^-4	0.917	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo
X	5042782	X_5042782_SNP [dm3] X_5148749_SNP [dm6]	A	T	1.390e^-4	0.917	INTRON rg & 1 other
3L	10526815	3L_10526815_SNP [dm3] 3L_10533715_SNP [dm6]	T	A	1.407e^-4	0.917	INTRON A2bp1
2R	8428754	2R_8428754_SNP [dm3] 2R_12541249_SNP [dm6]	A	G	1.411e^-4	0.917	INTRON fra	TF binding site mE1_TFBS_cad
2L	7743125	2L_7743125_SNP [dm3] 2L_7743125_SNP [dm6]	T	C	1.414e^-4	0.917	DOWNSTREAM CG7214 INTERGENIC
2R	9450027	2R_9450027_SNP [dm3] 2R_13562522_SNP [dm6]	C	G	1.415e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	9865381	3L_9865381_SNP [dm3] 3L_9872281_SNP [dm6]	A	T	1.415e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	9522005	2R_9522005_SNP [dm3] 2R_13634500_SNP [dm6]	A	G	1.426e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
3L	14676843	3L_14676843_INS [dm3] 3L_14683743_INS [dm6]	G	GAATAAATTGCATG...	1.434e^-4	0.917	INTRON ome
2R	10854995	2R_10854995_SNP [dm3] 2R_14967490_SNP [dm6]	A	T	1.436e^-4	0.917	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14410277	2L_14410277_SNP [dm3] 2L_14410277_SNP [dm6]	G	A	1.445e^-4	0.917	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17523186	3L_17523186_SNP [dm3] 3L_17530086_SNP [dm6]	G	A	1.454e^-4	0.917	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16861672	2R_16861672_SNP [dm3] 2R_20974167_SNP [dm6]	G	C	1.478e^-4	0.917	UPSTREAM CG15649 INTERGENIC
2R	8185745	2R_8185745_SNP [dm3] 2R_12298240_SNP [dm6]	T	A	1.494e^-4	0.917	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3L	9133036	3L_9133036_SNP [dm3] 3L_9139936_SNP [dm6]	G	T	1.507e^-4	0.917	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad
3R	12928745	3R_12928745_SNP [dm3] 3R_17103023_SNP [dm6]	A	G	1.508e^-4	0.917	INTRON cher
3R	7572364	3R_7572364_SNP [dm3] 3R_11746642_SNP [dm6]	G	C	1.522e^-4	0.917	SYNONYMOUS_CODING CG6923	TF binding site mE1_TFBS_chinmo
X	12136692	X_12136692_SNP [dm3] X_12242659_SNP [dm6]	C	T	1.526e^-4	0.917	INTRON Ten-a
2L	6105521	2L_6105521_SNP [dm3] 2L_6105521_SNP [dm6]	T	A	1.526e^-4	0.917	INTRON stai
3R	5885755	3R_5885755_SNP [dm3] 3R_10060033_SNP [dm6]	C	G	1.530e^-4	0.917	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2R	8514965	2R_8514965_DEL [dm3] 2R_12627460_DEL [dm6]	CC	C	1.533e^-4	0.917	INTRON CG17760
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	1.537e^-4	0.917	UTR_3_PRIME ACXA UPSTREAM ACXE
3R	15232366	3R_15232366_SNP [dm3] 3R_19406644_SNP [dm6]	G	A	1.543e^-4	0.917	DOWNSTREAM CG5316 INTERGENIC
2R	13432230	2R_13432230_SNP [dm3] 2R_17544725_SNP [dm6]	A	G	1.543e^-4	0.917	UPSTREAM cyp33 DOWNSTREAM CG43370 INTRON CG34194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	17018553	2L_17018553_SNP [dm3] 2L_17018553_SNP [dm6]	C	G	1.549e^-4	0.917	UPSTREAM CR45462 INTERGENIC
2L	6722549	2L_6722549_SNP [dm3] 2L_6722549_SNP [dm6]	T	C	1.570e^-4	0.917	INTRON homer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9522011	2R_9522011_SNP [dm3] 2R_13634506_SNP [dm6]	G	C	1.582e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	12014024	2R_12014024_SNP [dm3] 2R_16126519_SNP [dm6]	T	G	1.583e^-4	0.917	INTRON spin	TF binding site BDTNP1_TFBS_dl
2R	7116392	2R_7116392_SNP [dm3] 2R_11228887_SNP [dm6]	C	A	1.590e^-4	0.917	INTRON metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	12583099	2R_12583099_SNP [dm3] 2R_16695594_SNP [dm6]	A	G	1.593e^-4	0.917	INTRON CG30463
2L	12444118	2L_12444118_SNP [dm3] 2L_12444118_SNP [dm6]	C	G	1.606e^-4	0.917	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	1.610e^-4	0.917	INTERGENIC
3L	18721583	3L_18721583_SNP [dm3] 3L_18728483_SNP [dm6]	A	G	1.617e^-4	0.917	INTERGENIC
3R	16866701	3R_16866701_SNP [dm3] 3R_21040979_SNP [dm6]	C	G	1.623e^-4	0.917	SPLICE_SITE_REGION Dhc93AB SYNONYMOUS_CODING Dhc93AB
3L	2015000	3L_2015000_SNP [dm3] 3L_2015000_SNP [dm6]	A	G	1.656e^-4	0.917	INTERGENIC
3R	24008292	3R_24008292_SNP [dm3] 3R_28182570_SNP [dm6]	T	C	1.665e^-4	0.917	INTRON CG34354
3L	7711802	3L_7711802_SNP [dm3] 3L_7718702_SNP [dm6]	C	T	1.670e^-4	0.917	UPSTREAM CG12262 & 1 other INTRON CG32373
X	10742616	X_10742616_SNP [dm3] X_10848583_SNP [dm6]	A	G	1.673e^-4	0.917	UPSTREAM CG2202 DOWNSTREAM CG17333 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7859332	3R_7859332_SNP [dm3] 3R_12033610_SNP [dm6]	C	T	1.673e^-4	0.917	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2073700	3L_2073700_SNP [dm3] 3L_2073700_SNP [dm6]	A	G	1.677e^-4	0.917	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
X	6147265	X_6147265_SNP [dm3] X_6253232_SNP [dm6]	G	A	1.680e^-4	0.917	INTRON Rbcn-3A
3R	5885770	3R_5885770_SNP [dm3] 3R_10060048_SNP [dm6]	G	T	1.690e^-4	0.917	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2L	2420397	2L_2420397_DEL [dm3] 2L_2420397_DEL [dm6]	TT	T	1.699e^-4	0.917	UPSTREAM CG34447 & 1 other INTERGENIC
2R	13719441	2R_13719441_SNP [dm3] 2R_17831936_SNP [dm6]	A	C	1.699e^-4	0.917	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	961469	2L_961469_SNP [dm3] 2L_961469_SNP [dm6]	A	C	1.707e^-4	0.917	INTERGENIC
3R	14675079	3R_14675079_INS [dm3] 3R_18849357_INS [dm6]	T	TATT	1.733e^-4	0.917	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9181107	2R_9181107_SNP [dm3] 2R_13293602_SNP [dm6]	G	A	1.734e^-4	0.917	INTRON Dh31-R
3R	24578266	3R_24578266_SNP [dm3] 3R_28752544_SNP [dm6]	T	C	1.738e^-4	0.917	UPSTREAM CG10000 INTERGENIC
3R	14672672	3R_14672672_SNP [dm3] 3R_18846950_SNP [dm6]	C	A	1.739e^-4	0.917	INTRON CG18208
2L	5147377	2L_5147377_SNP [dm3] 2L_5147377_SNP [dm6]	A	G	1.746e^-4	0.917	INTRON Msp300
2L	5147386	2L_5147386_SNP [dm3] 2L_5147386_SNP [dm6]	A	T	1.746e^-4	0.917	INTRON Msp300
3R	15471585	3R_15471585_SNP [dm3] 3R_19645863_SNP [dm6]	C	T	1.752e^-4	0.917	SYNONYMOUS_CODING Nup58	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25395702	3R_25395702_SNP [dm3] 3R_29569980_SNP [dm6]	C	T	1.755e^-4	0.917	INTERGENIC
3L	15916629	3L_15916629_SNP [dm3] 3L_15923529_SNP [dm6]	C	T	1.756e^-4	0.917	INTRON sff
X	9839792	X_9839792_DEL [dm3] X_9945759_DEL [dm6]	CAACTCTTACTCT...	AGG	1.769e^-4	0.917	INTERGENIC
X	8961972	X_8961972_SNP [dm3] X_9067939_SNP [dm6]	G	A	1.770e^-4	0.917	UTR_5_PRIME CG15365
X	9067506	X_9067506_SNP [dm3] X_9173473_SNP [dm6]	T	C	1.782e^-4	0.917	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19203065	2R_19203065_SNP [dm3] 2R_23315542_SNP [dm6]	A	C	1.786e^-4	0.917	INTERGENIC
2R	13937945	2R_13937945_SNP [dm3] 2R_18050440_SNP [dm6]	C	T	1.790e^-4	0.917	NON_SYNONYMOUS_CODING Muc55B UPSTREAM CG14495	TF binding site mE1_TFBS_sens
2R	16320313	2R_16320313_SNP [dm3] 2R_20432808_SNP [dm6]	A	G	1.792e^-4	0.917	INTRON CG12484
2R	12769507	2R_12769507_SNP [dm3] 2R_16882002_SNP [dm6]	A	T	1.796e^-4	0.917	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_inv
2L	1340082	2L_1340082_SNP [dm3] 2L_1340082_SNP [dm6]	C	G	1.799e^-4	0.917	INTERGENIC
3L	1455074	3L_1455074_SNP [dm3] 3L_1455074_SNP [dm6]	A	G	1.804e^-4	0.917	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12769505	2R_12769505_SNP [dm3] 2R_16882000_SNP [dm6]	T	G	1.806e^-4	0.917	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_inv
3L	9873012	3L_9873012_SNP [dm3] 3L_9879912_SNP [dm6]	T	A	1.813e^-4	0.917	INTRON CG34382
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	1.823e^-4	0.917	UPSTREAM CG11537 INTRON CG11537
3L	9865383	3L_9865383_SNP [dm3] 3L_9872283_SNP [dm6]	G	T	1.823e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	14437563	3L_14437563_SNP [dm3] 3L_14444463_SNP [dm6]	A	G	1.826e^-4	0.917	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	6352974	2R_6352974_DEL [dm3] 2R_10465469_DEL [dm6]	AA	A	1.828e^-4	0.917	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22421182	3L_22421182_SNP [dm3] 3L_22428082_SNP [dm6]	G	A	1.839e^-4	0.917	INTERGENIC
2L	15934457	2L_15934457_SNP [dm3] 2L_15934457_SNP [dm6]	C	T	1.850e^-4	0.917	INTRON beat-Ib
2R	18333222	2R_18333222_SNP [dm3] 2R_22445717_SNP [dm6]	C	T	1.850e^-4	0.917	INTERGENIC
3L	14737476	3L_14737476_SNP [dm3] 3L_14744376_SNP [dm6]	A	G	1.853e^-4	0.917	NON_SYNONYMOUS_CODING ome
2R	12584101	2R_12584101_SNP [dm3] 2R_16696596_SNP [dm6]	G	T	1.867e^-4	0.917	INTRON CG30463
2R	14723727	2R_14723727_INS [dm3] 2R_18836222_INS [dm6]	T	TT	1.867e^-4	0.917	DOWNSTREAM CG15099 INTRON CG15083
2L	12925932	2L_12925932_SNP [dm3] 2L_12925932_SNP [dm6]	G	A	1.869e^-4	0.917	DOWNSTREAM ACXA INTRON ACXE
2R	9971635	2R_9971635_DEL [dm3] 2R_14084130_DEL [dm6]	ACTGCAA	A	1.869e^-4	0.917	INTRON Prosap
3L	10456350	3L_10456350_SNP [dm3] 3L_10463250_SNP [dm6]	A	C	1.896e^-4	0.917	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	1.899e^-4	0.917	INTERGENIC
2R	11247823	2R_11247823_SNP [dm3] 2R_15360318_SNP [dm6]	C	T	1.902e^-4	0.917	INTRON unc-5
2L	17017723	2L_17017723_SNP [dm3] 2L_17017723_SNP [dm6]	C	T	1.922e^-4	0.917	DOWNSTREAM CR45462 INTERGENIC
2R	7438737	2R_7438737_SNP [dm3] 2R_11551232_SNP [dm6]	T	C	1.923e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13645827	2R_13645827_SNP [dm3] 2R_17758322_SNP [dm6]	C	T	1.924e^-4	0.917	SYNONYMOUS_CODING HLH54F	TF binding site BDTNP1_TFBS_twi
2L	1566596	2L_1566596_SNP [dm3] 2L_1566596_SNP [dm6]	A	G	1.927e^-4	0.917	INTRON haf
3R	17209156	3R_17209156_SNP [dm3] 3R_21383434_SNP [dm6]	G	A	1.945e^-4	0.917	INTERGENIC
3L	10556971	3L_10556971_SNP [dm3] 3L_10563871_SNP [dm6]	C	T	1.947e^-4	0.917	INTRON A2bp1
2R	10766534	2R_10766534_SNP [dm3] 2R_14879029_SNP [dm6]	G	T	1.954e^-4	0.917	NON_SYNONYMOUS_CODING Cyp6a19 UTR_3_PRIME Cyp6a19 DOWNSTREAM Cyp6a9
2L	2423725	2L_2423725_SNP [dm3] 2L_2423725_SNP [dm6]	A	G	1.959e^-4	0.917	UTR_3_PRIME CG9886 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo
3R	7890085	3R_7890085_SNP [dm3] 3R_12064363_SNP [dm6]	A	G	1.967e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	9522015	2R_9522015_SNP [dm3] 2R_13634510_SNP [dm6]	C	T	1.980e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
3L	6025605	3L_6025605_SNP [dm3] 3L_6032505_SNP [dm6]	C	A	1.982e^-4	0.917	DOWNSTREAM CG10477 INTERGENIC
3L	8774657	3L_8774657_SNP [dm3] 3L_8781557_SNP [dm6]	C	A	1.989e^-4	0.917	INTRON Fhos
2R	9522009	2R_9522009_SNP [dm3] 2R_13634504_SNP [dm6]	A	T	1.992e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	16101291	2R_16101291_SNP [dm3] 2R_20213786_SNP [dm6]	A	C	1.993e^-4	0.917	INTERGENIC
2L	2424531	2L_2424531_SNP [dm3] 2L_2424531_SNP [dm6]	G	C	2.001e^-4	0.917	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	4050995	X_4050995_SNP [dm3] X_4156962_SNP [dm6]	C	T	2.020e^-4	0.917	INTRON Fas2
2L	516240	2L_516240_SNP [dm3] 2L_516240_SNP [dm6]	C	T	2.022e^-4	0.917	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25395644	3R_25395644_SNP [dm3] 3R_29569922_SNP [dm6]	A	G	2.025e^-4	0.917	INTERGENIC
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	2.025e^-4	0.917	INTRON Rdl
X	6147455	X_6147455_SNP [dm3] X_6253422_SNP [dm6]	A	T	2.030e^-4	0.917	INTRON Rbcn-3A
2L	15233806	2L_15233806_SNP [dm3] 2L_15233806_SNP [dm6]	A	G	2.030e^-4	0.917	INTRON ZnT35C
3R	22742884	3R_22742884_SNP [dm3] 3R_26917162_SNP [dm6]	T	G	2.034e^-4	0.917	INTRON sda
2L	11332360	2L_11332360_SNP [dm3] 2L_11332360_SNP [dm6]	A	C	2.042e^-4	0.917	INTRON CR44584
X	8140431	X_8140431_SNP [dm3] X_8246398_SNP [dm6]	C	T	2.050e^-4	0.917	SYNONYMOUS_CODING Trxr-1	TF binding site mE1_TFBS_chinmo
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	2.057e^-4	0.917	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20769943	2L_20769943_SNP [dm3] 2L_20769943_SNP [dm6]	C	A	2.058e^-4	0.917	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9873011	3L_9873011_SNP [dm3] 3L_9879911_SNP [dm6]	A	T	2.061e^-4	0.917	INTRON CG34382
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	2.071e^-4	0.917	INTRON CG15630
2R	13937659	2R_13937659_SNP [dm3] 2R_18050154_SNP [dm6]	A	C	2.076e^-4	0.917	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	2.079e^-4	0.917	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8429896	2R_8429896_SNP [dm3] 2R_12542391_SNP [dm6]	G	A	2.081e^-4	0.917	INTRON fra
2L	15775773	2L_15775773_MNP [dm3] 2L_15775773_MNP [dm6]	GTTT	CGAA	2.085e^-4	0.917	DOWNSTREAM CG43760 INTERGENIC
X	20434973	X_20434973_SNP [dm3] X_20563946_SNP [dm6]	C	T	2.096e^-4	0.917	INTRON RunxB
3L	7306435	3L_7306435_SNP [dm3] 3L_7313335_SNP [dm6]	A	T	2.101e^-4	0.917	UPSTREAM unc-13-4A INTERGENIC
3L	17285822	3L_17285822_SNP [dm3] 3L_17292722_SNP [dm6]	C	A	2.112e^-4	0.917	INTERGENIC
3L	17499101	3L_17499101_SNP [dm3] 3L_17506001_SNP [dm6]	C	A	2.123e^-4	0.917	INTRON Oatp74D
3L	13453446	3L_13453446_SNP [dm3] 3L_13460346_SNP [dm6]	C	T	2.125e^-4	0.917	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8799610	3R_8799610_SNP [dm3] 3R_12973888_SNP [dm6]	T	G	2.131e^-4	0.917	INTRON CG7381
3L	516092	3L_516092_SNP [dm3] 3L_516092_SNP [dm6]	T	C	2.140e^-4	0.917	INTRON klar
2L	7741574	2L_7741574_SNP [dm3] 2L_7741574_SNP [dm6]	T	A	2.140e^-4	0.917	UPSTREAM Acp1 INTERGENIC
2L	11307100	2L_11307100_SNP [dm3] 2L_11307100_SNP [dm6]	A	G	2.154e^-4	0.917	UPSTREAM CR43721 INTERGENIC
2L	11307108	2L_11307108_DEL [dm3] 2L_11307108_DEL [dm6]	TC	A	2.154e^-4	0.917	UPSTREAM CR43721 INTERGENIC
3L	14737509	3L_14737509_SNP [dm3] 3L_14744409_SNP [dm6]	G	T	2.162e^-4	0.917	NON_SYNONYMOUS_CODING ome
2R	9913885	2R_9913885_SNP [dm3] 2R_14026380_SNP [dm6]	G	T	2.164e^-4	0.917	INTRON mam
3R	24338885	3R_24338885_SNP [dm3] 3R_28513163_SNP [dm6]	C	G	2.173e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12408985	2R_12408985_SNP [dm3] 2R_16521480_SNP [dm6]	T	C	2.177e^-4	0.917	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13937686	2R_13937686_SNP [dm3] 2R_18050181_SNP [dm6]	C	T	2.187e^-4	0.917	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
3R	23877512	3R_23877512_SNP [dm3] 3R_28051790_SNP [dm6]	G	A	2.188e^-4	0.917	INTRON CG34362
2R	14543561	2R_14543561_SNP [dm3] 2R_18656056_SNP [dm6]	C	T	2.190e^-4	0.917	INTRON SP2637	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10629230	2R_10629230_SNP [dm3] 2R_14741725_SNP [dm6]	G	A	2.194e^-4	0.917	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14598417	2R_14598417_SNP [dm3] 2R_18710912_SNP [dm6]	T	C	2.196e^-4	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7760128	3R_7760128_SNP [dm3] 3R_11934406_SNP [dm6]	C	T	2.199e^-4	0.917	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10817185	3R_10817185_SNP [dm3] 3R_14991463_SNP [dm6]	C	T	2.202e^-4	0.917	INTERGENIC
2L	9344657	2L_9344657_SNP [dm3] 2L_9344657_SNP [dm6]	G	T	2.209e^-4	0.917	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9572272	2L_9572272_SNP [dm3] 2L_9572272_SNP [dm6]	T	C	2.210e^-4	0.917	SYNONYMOUS_CODING CG3838
2L	15856805	2L_15856805_SNP [dm3] 2L_15856805_SNP [dm6]	C	G	2.215e^-4	0.917	DOWNSTREAM Tektin-A INTERGENIC
X	6113918	X_6113918_SNP [dm3] X_6219885_SNP [dm6]	A	G	2.220e^-4	0.917	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	24332884	3R_24332884_SNP [dm3] 3R_28507162_SNP [dm6]	C	T	2.222e^-4	0.917	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	25394321	3R_25394321_SNP [dm3] 3R_29568599_SNP [dm6]	T	G	2.227e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17176377	2L_17176377_SNP [dm3] 2L_17176377_SNP [dm6]	T	G	2.238e^-4	0.917	UPSTREAM Gr36a EXON CR44394
X	18997500	X_18997500_SNP [dm3] X_19103467_SNP [dm6]	T	A	2.253e^-4	0.917	INTERGENIC
3R	15380611	3R_15380611_SNP [dm3] 3R_19554889_SNP [dm6]	G	A	2.260e^-4	0.917	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16978826	3R_16978826_SNP [dm3] 3R_21153104_SNP [dm6]	G	C	2.264e^-4	0.917	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14821578	3R_14821578_SNP [dm3] 3R_18995856_SNP [dm6]	A	G	2.267e^-4	0.917	INTRON gukh
2L	15779220	2L_15779220_SNP [dm3] 2L_15779220_SNP [dm6]	C	A	2.279e^-4	0.917	INTERGENIC
2L	12912425	2L_12912425_SNP [dm3] 2L_12912425_SNP [dm6]	T	C	2.280e^-4	0.917	UPSTREAM ACXC INTERGENIC
3L	15936825	3L_15936825_SNP [dm3] 3L_15943725_SNP [dm6]	G	A	2.282e^-4	0.917	INTRON Pka-C3
3L	7300823	3L_7300823_SNP [dm3] 3L_7307723_SNP [dm6]	T	G	2.289e^-4	0.917	INTRON unc-13-4A
3L	8641131	3L_8641131_SNP [dm3] 3L_8648031_SNP [dm6]	G	T	2.291e^-4	0.917	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13058364	3L_13058364_SNP [dm3] 3L_13065264_SNP [dm6]	G	T	2.299e^-4	0.917	INTERGENIC
X	19224457	X_19224457_DEL [dm3] X_19330424_DEL [dm6]	TGGGAATT	T	2.306e^-4	0.917	INTRON nAChRalpha7
2L	9572262	2L_9572262_SNP [dm3] 2L_9572262_SNP [dm6]	T	C	2.307e^-4	0.917	NON_SYNONYMOUS_CODING CG3838
3L	7196175	3L_7196175_SNP [dm3] 3L_7203075_SNP [dm6]	A	T	2.307e^-4	0.917	INTERGENIC
2R	9072078	2R_9072078_SNP [dm3] 2R_13184573_SNP [dm6]	A	G	2.311e^-4	0.917	DOWNSTREAM Kdm4B INTRON CG17724 & 2 others
3R	21634485	3R_21634485_SNP [dm3] 3R_25808763_SNP [dm6]	G	T	2.311e^-4	0.917	DOWNSTREAM CR45652 INTERGENIC
2L	9770876	2L_9770876_SNP [dm3] 2L_9770876_SNP [dm6]	A	C	2.314e^-4	0.917	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2L	12233990	2L_12233990_SNP [dm3] 2L_12233990_SNP [dm6]	A	G	2.320e^-4	0.917	INTRON aret
3L	8690352	3L_8690352_SNP [dm3] 3L_8697252_SNP [dm6]	A	T	2.320e^-4	0.917	INTERGENIC
2R	8488493	2R_8488493_SNP [dm3] 2R_12600988_SNP [dm6]	C	A	2.324e^-4	0.917	INTRON Amph
2R	14598838	2R_14598838_SNP [dm3] 2R_18711333_SNP [dm6]	G	C	2.329e^-4	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC
3R	16903276	3R_16903276_SNP [dm3] 3R_21077554_SNP [dm6]	A	T	2.332e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
2R	12014023	2R_12014023_SNP [dm3] 2R_16126518_SNP [dm6]	G	A	2.340e^-4	0.917	INTRON spin	TF binding site BDTNP1_TFBS_dl
3L	1805134	3L_1805134_SNP [dm3] 3L_1805134_SNP [dm6]	A	G	2.340e^-4	0.917	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
3L	9502181	3L_9502181_INS [dm3] 3L_9509081_INS [dm6]	C	CC	2.345e^-4	0.917	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22374281	3L_22374281_SNP [dm3] 3L_22381181_SNP [dm6]	A	G	2.348e^-4	0.917	INTRON Ten-m
3L	9864553	3L_9864553_SNP [dm3] 3L_9871453_SNP [dm6]	A	G	2.353e^-4	0.917	DOWNSTREAM CG8108 INTERGENIC
3L	22391115	3L_22391115_SNP [dm3] 3L_22398015_SNP [dm6]	T	A	2.357e^-4	0.917	INTRON Ten-m
X	8278920	X_8278920_SNP [dm3] X_8384887_SNP [dm6]	T	A	2.361e^-4	0.917	UPSTREAM CG1387 INTERGENIC
3R	16903246	3R_16903246_SNP [dm3] 3R_21077524_SNP [dm6]	A	T	2.364e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
X	6147430	X_6147430_SNP [dm3] X_6253397_SNP [dm6]	C	T	2.371e^-4	0.917	INTRON Rbcn-3A
2L	9406905	2L_9406905_SNP [dm3] 2L_9406905_SNP [dm6]	T	G	2.377e^-4	0.917	INTRON Shawl
X	16593323	X_16593323_SNP [dm3] X_16699290_SNP [dm6]	T	C	2.380e^-4	0.917	UTR_3_PRIME CG9676 INTRON CG4678
2R	14599116	2R_14599116_SNP [dm3] 2R_18711611_SNP [dm6]	A	G	2.384e^-4	0.917	UPSTREAM CG15087 EXON pncr016:2R
2R	9236409	2R_9236409_SNP [dm3] 2R_13348904_SNP [dm6]	A	G	2.387e^-4	0.917	INTRON CR44206
X	18728615	X_18728615_SNP [dm3] X_18834582_SNP [dm6]	C	T	2.388e^-4	0.917	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
X	10415153	X_10415153_SNP [dm3] X_10521120_SNP [dm6]	G	T	2.396e^-4	0.917	INTRON spri
3L	9873007	3L_9873007_DEL [dm3] 3L_9879907_DEL [dm6]	GGA	T	2.400e^-4	0.917	INTRON CG34382
2R	11266316	2R_11266316_SNP [dm3] 2R_15378811_SNP [dm6]	T	G	2.401e^-4	0.917	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12619901	2R_12619901_INS [dm3] 2R_16732396_INS [dm6]	A	ACAATA	2.417e^-4	0.917	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	3240634	2L_3240634_SNP [dm3] 2L_3240634_SNP [dm6]	G	A	2.427e^-4	0.917	INTERGENIC
3L	20716385	3L_20716385_SNP [dm3] 3L_20723285_SNP [dm6]	A	T	2.454e^-4	0.917	INTERGENIC
2R	14537005	2R_14537005_SNP [dm3] 2R_18649500_SNP [dm6]	C	G	2.456e^-4	0.917	INTRON SP2637
2R	6376362	2R_6376362_SNP [dm3] 2R_10488857_SNP [dm6]	C	T	2.463e^-4	0.917	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola
3R	25228555	3R_25228555_SNP [dm3] 3R_29402833_SNP [dm6]	T	C	2.470e^-4	0.917	INTRON Ptp99A
X	5042798	X_5042798_SNP [dm3] X_5148765_SNP [dm6]	A	C	2.476e^-4	0.917	INTRON rg & 1 other
3R	26332302	3R_26332302_SNP [dm3] 3R_30506580_SNP [dm6]	C	G	2.478e^-4	0.917	SPLICE_SITE_REGION CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
X	10415119	X_10415119_SNP [dm3] X_10521086_SNP [dm6]	G	A	2.486e^-4	0.917	INTRON spri
2L	5886762	2L_5886762_SNP [dm3] 2L_5886762_SNP [dm6]	C	T	2.490e^-4	0.917	DOWNSTREAM CR44577 & 1 other INTERGENIC
3R	24339455	3R_24339455_SNP [dm3] 3R_28513733_SNP [dm6]	C	T	2.492e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27475154	3R_27475154_DEL [dm3] 3R_31649432_DEL [dm6]	GGATAT	A	2.496e^-4	0.917	INTRON kek6
3L	11406436	3L_11406436_SNP [dm3] 3L_11413336_SNP [dm6]	G	A	2.497e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11406437	3L_11406437_SNP [dm3] 3L_11413337_SNP [dm6]	C	T	2.497e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7249973	2L_7249973_SNP [dm3] 2L_7249973_SNP [dm6]	G	A	2.498e^-4	0.917	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3362804	2L_3362804_SNP [dm3] 2L_3362804_SNP [dm6]	G	A	2.501e^-4	0.917	INTRON CG34394	TF binding site mE1_TFBS_cad
3R	9973411	3R_9973411_SNP [dm3] 3R_14147689_SNP [dm6]	G	T	2.503e^-4	0.917	DOWNSTREAM CG14355 INTERGENIC
3L	4237888	3L_4237888_SNP [dm3] 3L_4237888_SNP [dm6]	C	G	2.505e^-4	0.917	INTERGENIC
X	16880595	X_16880595_SNP [dm3] X_16986562_SNP [dm6]	T	A	2.508e^-4	0.917	INTRON CG45002
3R	7741191	3R_7741191_SNP [dm3] 3R_11915469_SNP [dm6]	C	T	2.512e^-4	0.917	INTRON Cad87A
3L	17933672	3L_17933672_SNP [dm3] 3L_17940572_SNP [dm6]	T	A	2.517e^-4	0.917	INTRON CG43174
3R	26158214	3R_26158214_SNP [dm3] 3R_30332492_SNP [dm6]	C	T	2.531e^-4	0.917	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	20267951	2L_20267951_SNP [dm3] 2L_20267951_SNP [dm6]	A	G	2.536e^-4	0.917	INTERGENIC
3L	2004867	3L_2004867_SNP [dm3] 3L_2004867_SNP [dm6]	G	A	2.536e^-4	0.917	DOWNSTREAM CG42841 INTRON CG42841
2L	18609529	2L_18609529_SNP [dm3] 2L_18609529_SNP [dm6]	A	G	2.537e^-4	0.917	UTR_3_PRIME CG10333 DOWNSTREAM Atac2
X	10373763	X_10373763_SNP [dm3] X_10479730_SNP [dm6]	G	A	2.546e^-4	0.917	INTRON PPP4R2r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	15237222	2L_15237222_SNP [dm3] 2L_15237222_SNP [dm6]	A	T	2.547e^-4	0.917	INTRON ZnT35C
2R	14477233	2R_14477233_SNP [dm3] 2R_18589728_SNP [dm6]	A	G	2.549e^-4	0.917	INTRON GEFmeso
3R	15329192	3R_15329192_SNP [dm3] 3R_19503470_SNP [dm6]	A	G	2.549e^-4	0.917	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3L	14828389	3L_14828389_SNP [dm3] 3L_14835289_SNP [dm6]	A	G	2.553e^-4	0.917	INTRON CG17839
3L	20716575	3L_20716575_SNP [dm3] 3L_20723475_SNP [dm6]	A	C	2.555e^-4	0.917	INTERGENIC
X	4672544	X_4672544_SNP [dm3] X_4778511_SNP [dm6]	T	C	2.563e^-4	0.917	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
3R	26332247	3R_26332247_SNP [dm3] 3R_30506525_SNP [dm6]	A	T	2.564e^-4	0.917	SYNONYMOUS_CODING CG15539 UPSTREAM PH4alphaSG1 & 1 other
3L	9865287	3L_9865287_DEL [dm3] 3L_9872187_DEL [dm6]	GTTAACGGATGG...	G	2.574e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	15237221	2L_15237221_SNP [dm3] 2L_15237221_SNP [dm6]	C	T	2.577e^-4	0.917	INTRON ZnT35C
3L	17493367	3L_17493367_SNP [dm3] 3L_17500267_SNP [dm6]	T	A	2.577e^-4	0.917	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13716126	2L_13716126_SNP [dm3] 2L_13716126_SNP [dm6]	A	G	2.579e^-4	0.917	INTRON CG31814
3R	13938263	3R_13938263_INS [dm3] 3R_18112541_INS [dm6]	C	CTTCGC	2.580e^-4	0.917	INTRON sr	TF binding site mE1_TFBS_HSA
3R	13938267	3R_13938267_SNP [dm3] 3R_18112545_SNP [dm6]	A	C	2.580e^-4	0.917	INTRON sr	TF binding site mE1_TFBS_HSA
3R	13938269	3R_13938269_SNP [dm3] 3R_18112547_SNP [dm6]	A	G	2.580e^-4	0.917	INTRON sr	TF binding site mE1_TFBS_HSA
2L	19317368	2L_19317368_SNP [dm3] 2L_19317368_SNP [dm6]	A	T	2.585e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21648438	3R_21648438_SNP [dm3] 3R_25822716_SNP [dm6]	T	C	2.590e^-4	0.917	DOWNSTREAM CR44949 INTERGENIC
3R	6852680	3R_6852680_SNP [dm3] 3R_11026958_SNP [dm6]	G	A	2.603e^-4	0.917	INTRON CG34114
3L	14737426	3L_14737426_SNP [dm3] 3L_14744326_SNP [dm6]	T	C	2.607e^-4	0.917	SYNONYMOUS_CODING ome
2R	12276512	2R_12276512_SNP [dm3] 2R_16389007_SNP [dm6]	C	G	2.607e^-4	0.917	INTRON Sema-2b
2L	15233392	2L_15233392_SNP [dm3] 2L_15233392_SNP [dm6]	A	G	2.616e^-4	0.917	INTRON ZnT35C
2L	3240659	2L_3240659_SNP [dm3] 2L_3240659_SNP [dm6]	G	A	2.621e^-4	0.917	INTERGENIC
2R	16678317	2R_16678317_SNP [dm3] 2R_20790812_SNP [dm6]	G	T	2.624e^-4	0.917	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2R	9522043	2R_9522043_SNP [dm3] 2R_13634538_SNP [dm6]	G	C	2.628e^-4	0.917	INTRON fas	TF binding site BDTNP1_TFBS_dl
X	10573268	X_10573268_SNP [dm3] X_10679235_SNP [dm6]	A	C	2.637e^-4	0.917	INTRON X11Lbeta
3L	22955366	3L_22955366_SNP [dm3] 3L_22962266_SNP [dm6]	G	C	2.667e^-4	0.917	DOWNSTREAM CR45758 INTERGENIC
2R	9162879	2R_9162879_SNP [dm3] 2R_13275374_SNP [dm6]	A	G	2.671e^-4	0.917	SYNONYMOUS_CODING Dh31-R
2L	2207967	2L_2207967_SNP [dm3] 2L_2207967_SNP [dm6]	G	A	2.672e^-4	0.917	SYNONYMOUS_CODING CG33124
3L	16310450	3L_16310450_SNP [dm3] 3L_16317350_SNP [dm6]	T	C	2.678e^-4	0.917	UPSTREAM Nplp3 INTERGENIC
3L	6608833	3L_6608833_INS [dm3] 3L_6615733_INS [dm6]	T	TGT	2.681e^-4	0.917	INTRON CG8398
2R	14461314	2R_14461314_SNP [dm3] 2R_18573809_SNP [dm6]	G	T	2.695e^-4	0.917	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9466765	3R_9466765_SNP [dm3] 3R_13641043_SNP [dm6]	A	G	2.698e^-4	0.917	UTR_3_PRIME sqd INTRON sqd
3L	9868596	3L_9868596_SNP [dm3] 3L_9875496_SNP [dm6]	C	T	2.708e^-4	0.917	UPSTREAM CR45406 INTERGENIC
X	8869526	X_8869526_SNP [dm3] X_8975493_SNP [dm6]	G	T	2.709e^-4	0.917	INTRON rdgA & 1 other
2L	1046357	2L_1046357_SNP [dm3] 2L_1046357_SNP [dm6]	G	C	2.709e^-4	0.917	INTRON IA-2
3L	9864938	3L_9864938_SNP [dm3] 3L_9871838_SNP [dm6]	A	G	2.712e^-4	0.917	INTERGENIC
X	12620895	X_12620895_SNP [dm3] X_12726862_SNP [dm6]	C	T	2.715e^-4	0.917	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2L	15773206	2L_15773206_SNP [dm3] 2L_15773206_SNP [dm6]	C	A	2.716e^-4	0.917	UPSTREAM CG31826 INTERGENIC
X	7091977	X_7091977_SNP [dm3] X_7197944_SNP [dm6]	G	A	2.721e^-4	0.917	INTRON CR44357 & 1 other
3R	11039594	3R_11039594_INS [dm3] 3R_15213872_INS [dm6]	T	TT	2.721e^-4	0.917	UPSTREAM CG4210 & 1 other DOWNSTREAM SIDL INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9723989	2L_9723989_SNP [dm3] 2L_9723989_SNP [dm6]	T	A	2.727e^-4	0.917	INTRON Nckx30C
3L	2814450	3L_2814450_SNP [dm3] 3L_2814450_SNP [dm6]	A	G	2.727e^-4	0.917	INTRON CG43444
3L	658641	3L_658641_SNP [dm3] 3L_658641_SNP [dm6]	A	G	2.728e^-4	0.917	DOWNSTREAM Rev1 INTERGENIC
X	3330569	X_3330569_SNP [dm3] X_3436536_SNP [dm6]	C	T	2.728e^-4	0.917	UPSTREAM CG14269 INTRON CR44999 & 1 other
2L	1343843	2L_1343843_SNP [dm3] 2L_1343843_SNP [dm6]	A	C	2.729e^-4	0.917	UPSTREAM Cdlc2 INTRON CG33922
3L	14244472	3L_14244472_SNP [dm3] 3L_14251372_SNP [dm6]	A	C	2.745e^-4	0.917	INTERGENIC
3L	9873016	3L_9873016_SNP [dm3] 3L_9879916_SNP [dm6]	G	T	2.750e^-4	0.917	INTRON CG34382
3R	23498550	3R_23498550_SNP [dm3] 3R_27672828_SNP [dm6]	A	T	2.758e^-4	0.917	INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	24334218	3R_24334218_SNP [dm3] 3R_28508496_SNP [dm6]	C	T	2.770e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	7847664	2L_7847664_SNP [dm3] 2L_7847664_SNP [dm6]	T	C	2.774e^-4	0.917	SPLICE_SITE_REGION CG14535 SYNONYMOUS_CODING CG14535
X	7686939	X_7686939_SNP [dm3] X_7792906_SNP [dm6]	A	T	2.778e^-4	0.917	INTERGENIC
3L	15921515	3L_15921515_SNP [dm3] 3L_15928415_SNP [dm6]	A	C	2.781e^-4	0.917	INTRON Pka-C3
2R	14598436	2R_14598436_SNP [dm3] 2R_18710931_SNP [dm6]	C	T	2.787e^-4	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2651890	3L_2651890_SNP [dm3] 3L_2651890_SNP [dm6]	C	A	2.790e^-4	0.917	UPSTREAM Snup & 2 others INTERGENIC
2R	18578951	2R_18578951_SNP [dm3] 2R_22691446_SNP [dm6]	G	A	2.800e^-4	0.917	EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21587394	3R_21587394_SNP [dm3] 3R_25761672_SNP [dm6]	G	T	2.805e^-4	0.917	UTR_5_PRIME LpR1 UPSTREAM LpR1
2L	3445885	2L_3445885_SNP [dm3] 2L_3445885_SNP [dm6]	T	C	2.816e^-4	0.917	UPSTREAM CG2772 INTERGENIC
2R	11244789	2R_11244789_SNP [dm3] 2R_15357284_SNP [dm6]	T	C	2.824e^-4	0.917	NON_SYNONYMOUS_CODING unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14154556	X_14154556_SNP [dm3] X_14260523_SNP [dm6]	G	A	2.824e^-4	0.917	UPSTREAM CG1461 INTERGENIC
3L	9865373	3L_9865373_SNP [dm3] 3L_9872273_SNP [dm6]	C	T	2.836e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	4051066	X_4051066_SNP [dm3] X_4157033_SNP [dm6]	G	A	2.846e^-4	0.917	INTRON Fas2
3L	9133893	3L_9133893_SNP [dm3] 3L_9140793_SNP [dm6]	G	A	2.858e^-4	0.917	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10330573	2R_10330573_SNP [dm3] 2R_14443068_SNP [dm6]	A	G	2.866e^-4	0.917	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	9867885	3L_9867885_SNP [dm3] 3L_9874785_SNP [dm6]	T	C	2.871e^-4	0.917	UPSTREAM CR45406 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13562596	X_13562596_SNP [dm3] X_13668563_SNP [dm6]	C	T	2.872e^-4	0.917	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl
3R	10814337	3R_10814337_SNP [dm3] 3R_14988615_SNP [dm6]	T	A	2.878e^-4	0.917	INTERGENIC
3R	25105225	3R_25105225_SNP [dm3] 3R_29279503_SNP [dm6]	G	A	2.883e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
3L	17522946	3L_17522946_SNP [dm3] 3L_17529846_SNP [dm6]	G	A	2.887e^-4	0.917	START_GAINED Edc3 UTR_5_PRIME Edc3 UPSTREAM Nedd4 DOWNSTREAM CR45165	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15025308	2R_15025308_SNP [dm3] 2R_19137803_SNP [dm6]	A	T	2.890e^-4	0.917	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9867797	3L_9867797_SNP [dm3] 3L_9874697_SNP [dm6]	T	G	2.895e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26158346	3R_26158346_SNP [dm3] 3R_30332624_SNP [dm6]	T	C	2.898e^-4	0.917	INTRON hdc	TF binding site mE1_TFBS_Kr
3L	11845836	3L_11845836_SNP [dm3] 3L_11852736_SNP [dm6]	T	C	2.901e^-4	0.917	INTRON CG44837
2R	6327491	2R_6327491_SNP [dm3] 2R_10439986_SNP [dm6]	A	T	2.908e^-4	0.917	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	12408986	2R_12408986_SNP [dm3] 2R_16521481_SNP [dm6]	T	G	2.911e^-4	0.917	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7581820	2L_7581820_INS [dm3] 2L_7581820_INS [dm6]	G	GCTAATGGGG	2.915e^-4	0.917	UPSTREAM Spn28B INTERGENIC
3L	17239706	3L_17239706_SNP [dm3] 3L_17246606_SNP [dm6]	A	G	2.916e^-4	0.917	INTRON CR43870
2L	2421553	2L_2421553_SNP [dm3] 2L_2421553_SNP [dm6]	G	A	2.919e^-4	0.917	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13899415	3R_13899415_SNP [dm3] 3R_18073693_SNP [dm6]	C	T	2.920e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2424558	2L_2424558_SNP [dm3] 2L_2424558_SNP [dm6]	T	C	2.925e^-4	0.917	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	16982764	X_16982764_DEL [dm3] X_17088731_DEL [dm6]	ATCGTTCATTTCGTATGTGG...	A	2.926e^-4	0.917	INTERGENIC
3R	16990123	3R_16990123_SNP [dm3] 3R_21164401_SNP [dm6]	G	T	2.937e^-4	0.917	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7457515	3L_7457515_SNP [dm3] 3L_7464415_SNP [dm6]	C	A	2.938e^-4	0.917	INTERGENIC
2R	14597821	2R_14597821_SNP [dm3] 2R_18710316_SNP [dm6]	G	C	2.939e^-4	0.917	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2R	14859377	2R_14859377_SNP [dm3] 2R_18971872_SNP [dm6]	C	A	2.943e^-4	0.917	SYNONYMOUS_CODING CG15107 UPSTREAM prod & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20812115	2L_20812115_INS [dm3] 2L_20812115_INS [dm6]	T	TA	2.948e^-4	0.917	INTRON CG9328
2R	16368346	2R_16368346_SNP [dm3] 2R_20480841_SNP [dm6]	C	T	2.961e^-4	0.917	INTERGENIC
3R	16865727	3R_16865727_SNP [dm3] 3R_21040005_SNP [dm6]	A	G	2.964e^-4	0.917	INTRON Dhc93AB
3R	16865736	3R_16865736_SNP [dm3] 3R_21040014_SNP [dm6]	A	T	2.964e^-4	0.917	INTRON Dhc93AB
2L	14417357	2L_14417357_SNP [dm3] 2L_14417357_SNP [dm6]	T	C	2.966e^-4	0.917	UPSTREAM Pburs INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7078105	3L_7078105_SNP [dm3] 3L_7085005_SNP [dm6]	A	G	2.966e^-4	0.917	DOWNSTREAM Cpr65Ea INTERGENIC
X	9838358	X_9838358_SNP [dm3] X_9944325_SNP [dm6]	A	C	2.969e^-4	0.917	INTERGENIC
3R	24334233	3R_24334233_SNP [dm3] 3R_28508511_SNP [dm6]	C	T	2.972e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	16301651	2L_16301651_SNP [dm3] 2L_16301651_SNP [dm6]	A	G	2.974e^-4	0.917	UTR_3_PRIME CG17328 DOWNSTREAM CG5869
3L	16776823	3L_16776823_SNP [dm3] 3L_16783723_SNP [dm6]	G	A	2.974e^-4	0.917	NON_SYNONYMOUS_CODING CG9706	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15779184	2L_15779184_SNP [dm3] 2L_15779184_SNP [dm6]	C	T	2.977e^-4	0.917	INTERGENIC
3L	9873004	3L_9873004_SNP [dm3] 3L_9879904_SNP [dm6]	C	T	2.985e^-4	0.917	INTRON CG34382
X	16982188	X_16982188_SNP [dm3] X_17088155_SNP [dm6]	C	A	2.987e^-4	0.917	UPSTREAM CG8945 INTERGENIC
2R	9451407	2R_9451407_SNP [dm3] 2R_13563902_SNP [dm6]	G	A	2.992e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	16675201	3L_16675201_SNP [dm3] 3L_16682101_SNP [dm6]	A	T	3.005e^-4	0.917	INTRON Lasp & 1 other
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	3.011e^-4	0.917	INTRON Gfrl
3L	16056420	3L_16056420_SNP [dm3] 3L_16063320_SNP [dm6]	T	C	3.012e^-4	0.917	UTR_3_PRIME Mbs INTRON Mbs
3R	12253131	3R_12253131_SNP [dm3] 3R_16427409_SNP [dm6]	G	A	3.016e^-4	0.917	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
3R	16903266	3R_16903266_SNP [dm3] 3R_21077544_SNP [dm6]	G	A	3.018e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
3L	14363757	3L_14363757_SNP [dm3] 3L_14370657_SNP [dm6]	A	C	3.030e^-4	0.917	UPSTREAM CG13481 INTERGENIC
3R	26331639	3R_26331639_SNP [dm3] 3R_30505917_SNP [dm6]	A	C	3.030e^-4	0.917	UPSTREAM CG15539 & 2 others INTERGENIC
3R	11585737	3R_11585737_SNP [dm3] 3R_15760015_SNP [dm6]	T	C	3.030e^-4	0.917	INTERGENIC
2R	9900131	2R_9900131_SNP [dm3] 2R_14012626_SNP [dm6]	A	C	3.034e^-4	0.917	INTRON mam
3R	11535684	3R_11535684_INS [dm3] 3R_15709962_INS [dm6]	T	TT	3.039e^-4	0.917	INTERGENIC
2R	7617240	2R_7617240_SNP [dm3] 2R_11729735_SNP [dm6]	A	T	3.045e^-4	0.917	INTERGENIC
2L	16242489	2L_16242489_SNP [dm3] 2L_16242489_SNP [dm6]	A	C	3.047e^-4	0.917	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
2R	9451386	2R_9451386_SNP [dm3] 2R_13563881_SNP [dm6]	C	A	3.054e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	9451405	2R_9451405_SNP [dm3] 2R_13563900_SNP [dm6]	C	T	3.054e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	7081418	3L_7081418_SNP [dm3] 3L_7088318_SNP [dm6]	G	T	3.057e^-4	0.917	SYNONYMOUS_CODING Cpr65Eb
2L	9574960	2L_9574960_SNP [dm3] 2L_9574960_SNP [dm6]	G	A	3.063e^-4	0.917	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_sens
3L	16685274	3L_16685274_SNP [dm3] 3L_16692174_SNP [dm6]	T	G	3.065e^-4	0.917	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
X	19224423	X_19224423_SNP [dm3] X_19330390_SNP [dm6]	G	C	3.065e^-4	0.917	INTRON nAChRalpha7
2L	17176414	2L_17176414_SNP [dm3] 2L_17176414_SNP [dm6]	G	C	3.065e^-4	0.917	UPSTREAM Gr36a DOWNSTREAM CR44394 INTERGENIC
3R	11585749	3R_11585749_SNP [dm3] 3R_15760027_SNP [dm6]	A	G	3.067e^-4	0.917	INTERGENIC
2R	11963372	2R_11963372_INS [dm3] 2R_16075867_INS [dm6]	G	GTCGTG	3.072e^-4	0.917	INTERGENIC
X	19224451	X_19224451_SNP [dm3] X_19330418_SNP [dm6]	T	C	3.073e^-4	0.917	INTRON nAChRalpha7
X	8030773	X_8030773_SNP [dm3] X_8136740_SNP [dm6]	G	A	3.084e^-4	0.917	SYNONYMOUS_CODING CG2120 DOWNSTREAM Smox
X	8781498	X_8781498_SNP [dm3] X_8887465_SNP [dm6]	G	T	3.090e^-4	0.917	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8500092	2R_8500092_SNP [dm3] 2R_12612587_SNP [dm6]	C	T	3.094e^-4	0.917	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
2R	8846588	2R_8846588_SNP [dm3] 2R_12959083_SNP [dm6]	A	T	3.101e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8500076	2R_8500076_SNP [dm3] 2R_12612571_SNP [dm6]	G	A	3.101e^-4	0.917	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	6808879	3R_6808879_SNP [dm3] 3R_10983157_SNP [dm6]	G	A	3.111e^-4	0.917	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17886860	2R_17886860_SNP [dm3] 2R_21999355_SNP [dm6]	G	T	3.112e^-4	0.917	INTRON CG34370
2L	10259719	2L_10259719_SNP [dm3] 2L_10259719_SNP [dm6]	A	G	3.117e^-4	0.917	UTR_5_PRIME Pten INTRON Pten	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_Kr
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	3.121e^-4	0.917	INTRON rg & 1 other
3L	22889975	3L_22889975_SNP [dm3] 3L_22896875_SNP [dm6]	A	T	3.125e^-4	0.917	DOWNSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16903270	3R_16903270_SNP [dm3] 3R_21077548_SNP [dm6]	T	A	3.141e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
3L	9865398	3L_9865398_SNP [dm3] 3L_9872298_SNP [dm6]	A	T	3.144e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	12910906	2L_12910906_SNP [dm3] 2L_12910906_SNP [dm6]	A	G	3.147e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2758511	2R_2758511_SNP [dm3] 2R_6871006_SNP [dm6]	A	C	3.150e^-4	0.917	INTRON coro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2758591	2L_2758591_SNP [dm3] 2L_2758591_SNP [dm6]	A	G	3.153e^-4	0.917	SYNONYMOUS_CODING CG9960 UTR_3_PRIME Snapin UPSTREAM CR44772 DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	20783488	2L_20783488_SNP [dm3] 2L_20783488_SNP [dm6]	A	T	3.154e^-4	0.917	DOWNSTREAM cad INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14598431	2R_14598431_SNP [dm3] 2R_18710926_SNP [dm6]	A	G	3.158e^-4	0.917	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16132460	2R_16132460_SNP [dm3] 2R_20244955_SNP [dm6]	C	A	3.165e^-4	0.917	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	21636902	3R_21636902_SNP [dm3] 3R_25811180_SNP [dm6]	G	T	3.169e^-4	0.917	UTR_5_PRIME CG5024 UPSTREAM CG17770 & 1 other
2R	13487265	2R_13487265_SNP [dm3] 2R_17599760_SNP [dm6]	G	A	3.170e^-4	0.917	UPSTREAM CG43920 & 1 other INTRON lack
3R	24334043	3R_24334043_SNP [dm3] 3R_28508321_SNP [dm6]	C	T	3.170e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3R	20312553	3R_20312553_SNP [dm3] 3R_24486831_SNP [dm6]	C	G	3.178e^-4	0.917	INTRON nAChRalpha2
3L	15266421	3L_15266421_SNP [dm3] 3L_15273321_SNP [dm6]	C	A	3.180e^-4	0.917	INTERGENIC
2L	14470003	2L_14470003_SNP [dm3] 2L_14470003_SNP [dm6]	T	A	3.182e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8435080	2R_8435080_DEL [dm3] 2R_12547575_DEL [dm6]	AA	A	3.182e^-4	0.917	INTRON fra	TF binding site BDTNP1_TFBS_dl
3R	26332114	3R_26332114_SNP [dm3] 3R_30506392_SNP [dm6]	G	A	3.183e^-4	0.917	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
3L	9873001	3L_9873001_SNP [dm3] 3L_9879901_SNP [dm6]	T	A	3.185e^-4	0.917	INTRON CG34382
2R	12583083	2R_12583083_SNP [dm3] 2R_16695578_SNP [dm6]	T	G	3.191e^-4	0.917	INTRON CG30463
3L	5623533	3L_5623533_SNP [dm3] 3L_5630433_SNP [dm6]	A	T	3.194e^-4	0.917	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	8150662	2L_8150662_SNP [dm3] 2L_8150662_SNP [dm6]	C	T	3.199e^-4	0.917	INTRON CG8552 & 1 other
3L	21787219	3L_21787219_SNP [dm3] 3L_21794119_SNP [dm6]	C	T	3.201e^-4	0.917	INTERGENIC
2R	18174061	2R_18174061_DEL [dm3] 2R_22286556_DEL [dm6]	CA	C	3.210e^-4	0.917	DOWNSTREAM dve INTERGENIC
3L	13353384	3L_13353384_SNP [dm3] 3L_13360284_SNP [dm6]	A	T	3.216e^-4	0.917	INTERGENIC
3L	12215920	3L_12215920_SNP [dm3] 3L_12222820_SNP [dm6]	C	A	3.225e^-4	0.917	INTRON app
3R	3329404	3R_3329404_SNP [dm3] 3R_7503682_SNP [dm6]	T	A	3.226e^-4	0.917	INTRON alpha-Est9
2L	285787	2L_285787_SNP [dm3] 2L_285787_SNP [dm6]	A	G	3.232e^-4	0.917	UPSTREAM CG3625 INTRON CG3625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9865555	3L_9865555_SNP [dm3] 3L_9872455_SNP [dm6]	A	G	3.245e^-4	0.917	INTERGENIC
X	4239480	X_4239480_SNP [dm3] X_4345447_SNP [dm6]	T	C	3.246e^-4	0.917	INTRON norpA
X	5757847	X_5757847_INS [dm3] X_5863814_INS [dm6]	G	GTCTGGAG	3.249e^-4	0.917	DOWNSTREAM CG43137 INTERGENIC
2R	18577933	2R_18577933_SNP [dm3] 2R_22690428_SNP [dm6]	A	T	3.253e^-4	0.917	UPSTREAM CR44764 DOWNSTREAM CR44763 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	12250921	3R_12250921_SNP [dm3] 3R_16425199_SNP [dm6]	C	T	3.254e^-4	0.917	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3L	8672560	3L_8672560_SNP [dm3] 3L_8679460_SNP [dm6]	G	T	3.256e^-4	0.917	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
2L	15237219	2L_15237219_SNP [dm3] 2L_15237219_SNP [dm6]	C	A	3.263e^-4	0.917	INTRON ZnT35C
3R	12252067	3R_12252067_SNP [dm3] 3R_16426345_SNP [dm6]	A	C	3.266e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	3.266e^-4	0.917	INTERGENIC
2L	3235567	2L_3235567_SNP [dm3] 2L_3235567_SNP [dm6]	A	C	3.267e^-4	0.917	INTERGENIC
3L	3780290	3L_3780290_SNP [dm3] 3L_3780290_SNP [dm6]	T	G	3.273e^-4	0.917	INTRON CG32264
3R	26332132	3R_26332132_SNP [dm3] 3R_30506410_SNP [dm6]	T	A	3.285e^-4	0.917	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2R	8430337	2R_8430337_SNP [dm3] 2R_12542832_SNP [dm6]	A	C	3.287e^-4	0.917	INTRON fra
2R	17418263	2R_17418263_INS [dm3] 2R_21530758_INS [dm6]	T	TT	3.289e^-4	0.917	DOWNSTREAM CR44725 INTRON Egfr	TF binding site BDTNP1_TFBS_twi
3R	21637635	3R_21637635_SNP [dm3] 3R_25811913_SNP [dm6]	C	A	3.299e^-4	0.917	UTR_5_PRIME CG17770 & 1 other UPSTREAM Acam DOWNSTREAM CG5024
2R	16101288	2R_16101288_SNP [dm3] 2R_20213783_SNP [dm6]	T	C	3.302e^-4	0.917	INTERGENIC
X	956035	X_956035_SNP [dm3] X_1062002_SNP [dm6]	C	A	3.311e^-4	0.917	INTRON CR44779	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16978895	3R_16978895_SNP [dm3] 3R_21153173_SNP [dm6]	C	G	3.317e^-4	0.917	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19208031	3R_19208031_SNP [dm3] 3R_23382309_SNP [dm6]	T	G	3.319e^-4	0.917	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6941114	X_6941114_SNP [dm3] X_7047081_SNP [dm6]	C	T	3.322e^-4	0.917	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	16903271	3R_16903271_INS [dm3] 3R_21077549_INS [dm6]	T	TTTCG	3.330e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
3R	18982948	3R_18982948_SNP [dm3] 3R_23157226_SNP [dm6]	T	A	3.337e^-4	0.917	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12921405	3R_12921405_DEL [dm3] 3R_17095683_DEL [dm6]	TGTAT	T	3.343e^-4	0.917	UPSTREAM cher INTRON cher
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	3.351e^-4	0.917	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18480912	2L_18480912_SNP [dm3] 2L_18480912_SNP [dm6]	G	A	3.366e^-4	0.917	INTRON CG10283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12459526	2R_12459526_SNP [dm3] 2R_16572021_SNP [dm6]	A	C	3.367e^-4	0.917	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3L	7081406	3L_7081406_SNP [dm3] 3L_7088306_SNP [dm6]	C	T	3.368e^-4	0.917	SYNONYMOUS_CODING Cpr65Eb
2R	13487264	2R_13487264_SNP [dm3] 2R_17599759_SNP [dm6]	T	C	3.371e^-4	0.917	UPSTREAM CG43920 & 1 other INTRON lack
2L	2424559	2L_2424559_SNP [dm3] 2L_2424559_SNP [dm6]	A	T	3.372e^-4	0.917	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424580	2L_2424580_SNP [dm3] 2L_2424580_SNP [dm6]	T	C	3.372e^-4	0.917	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	8690711	3L_8690711_SNP [dm3] 3L_8697611_SNP [dm6]	G	C	3.373e^-4	0.917	INTERGENIC
2L	8837682	2L_8837682_SNP [dm3] 2L_8837682_SNP [dm6]	T	C	3.374e^-4	0.917	INTERGENIC
3L	914661	3L_914661_SNP [dm3] 3L_914661_SNP [dm6]	A	T	3.379e^-4	0.917	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7076363	3L_7076363_SNP [dm3] 3L_7083263_SNP [dm6]	C	A	3.386e^-4	0.917	INTERGENIC
3L	12181208	3L_12181208_SNP [dm3] 3L_12188108_SNP [dm6]	T	C	3.396e^-4	0.917	UPSTREAM Est-6 DOWNSTREAM CG6910 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	6353759	2R_6353759_SNP [dm3] 2R_10466254_SNP [dm6]	C	T	3.397e^-4	0.917	SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16685258	3L_16685258_SNP [dm3] 3L_16692158_SNP [dm6]	C	G	3.397e^-4	0.917	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2R	6758939	2R_6758939_SNP [dm3] 2R_10871434_SNP [dm6]	C	A	3.398e^-4	0.917	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7792697	3R_7792697_SNP [dm3] 3R_11966975_SNP [dm6]	G	C	3.403e^-4	0.917	NON_SYNONYMOUS_CODING CG12213 UPSTREAM GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	3.411e^-4	0.917	INTRON trio
2L	5012179	2L_5012179_SNP [dm3] 2L_5012179_SNP [dm6]	C	T	3.415e^-4	0.917	UTR_3_PRIME vkg DOWNSTREAM CG3887	TF binding site mE1_TFBS_sens
3L	11407831	3L_11407831_SNP [dm3] 3L_11414731_SNP [dm6]	T	G	3.416e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10375168	X_10375168_SNP [dm3] X_10481135_SNP [dm6]	G	T	3.423e^-4	0.917	NON_SYNONYMOUS_CODING PPP4R2r DOWNSTREAM CG32687	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10456370	3L_10456370_SNP [dm3] 3L_10463270_SNP [dm6]	G	A	3.426e^-4	0.917	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7530446	3R_7530446_SNP [dm3] 3R_11704724_SNP [dm6]	G	A	3.439e^-4	0.917	UTR_3_PRIME I-t
2R	14598138	2R_14598138_SNP [dm3] 2R_18710633_SNP [dm6]	A	T	3.442e^-4	0.917	UPSTREAM pncr016:2R INTRON CG15087	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14246711	3L_14246711_SNP [dm3] 3L_14253611_SNP [dm6]	G	T	3.446e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	19377402	2R_19377402_SNP [dm3] 2R_23489879_SNP [dm6]	C	A	3.451e^-4	0.917	SYNONYMOUS_CODING CG43795	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	15921544	3L_15921544_SNP [dm3] 3L_15928444_SNP [dm6]	G	T	3.453e^-4	0.917	INTRON Pka-C3
3R	7598210	3R_7598210_SNP [dm3] 3R_11772488_SNP [dm6]	C	A	3.461e^-4	0.917	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8512976	3R_8512976_SNP [dm3] 3R_12687254_SNP [dm6]	A	T	3.461e^-4	0.917	INTRON kar
3R	21753757	3R_21753757_SNP [dm3] 3R_25928035_SNP [dm6]	A	C	3.461e^-4	0.917	INTRON CCAP-R
2L	3241011	2L_3241011_SNP [dm3] 2L_3241011_SNP [dm6]	C	G	3.468e^-4	0.917	INTERGENIC
3L	18555567	3L_18555567_SNP [dm3] 3L_18562467_SNP [dm6]	C	G	3.473e^-4	0.917	INTRON AstC-R1
3L	9134214	3L_9134214_SNP [dm3] 3L_9141114_SNP [dm6]	A	G	3.475e^-4	0.917	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16685275	3L_16685275_SNP [dm3] 3L_16692175_SNP [dm6]	C	T	3.475e^-4	0.917	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
3L	13894453	3L_13894453_SNP [dm3] 3L_13901353_SNP [dm6]	A	G	3.480e^-4	0.917	INTRON dysc
3L	1236366	3L_1236366_SNP [dm3] 3L_1236366_SNP [dm6]	G	A	3.482e^-4	0.917	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24333251	3R_24333251_SNP [dm3] 3R_28507529_SNP [dm6]	A	T	3.483e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad
2L	11772197	2L_11772197_SNP [dm3] 2L_11772197_SNP [dm6]	A	C	3.486e^-4	0.917	INTERGENIC
3R	16865215	3R_16865215_SNP [dm3] 3R_21039493_SNP [dm6]	A	G	3.494e^-4	0.917	SYNONYMOUS_CODING Dhc93AB
3R	15202567	3R_15202567_SNP [dm3] 3R_19376845_SNP [dm6]	A	G	3.496e^-4	0.917	SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	3.503e^-4	0.917	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
3L	1263251	3L_1263251_SNP [dm3] 3L_1263251_SNP [dm6]	A	G	3.504e^-4	0.917	INTRON CG9134
3L	8033181	3L_8033181_SNP [dm3] 3L_8040081_SNP [dm6]	A	T	3.507e^-4	0.917	INTRON nmo
3R	24334407	3R_24334407_SNP [dm3] 3R_28508685_SNP [dm6]	G	A	3.524e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11306877	2L_11306877_DEL [dm3] 2L_11306877_DEL [dm6]	GA	G	3.528e^-4	0.917	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18493463	2R_18493463_SNP [dm3] 2R_22605958_SNP [dm6]	C	T	3.530e^-4	0.917	UPSTREAM RpS16 & 2 others INTRON RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8506496	2R_8506496_INS [dm3] 2R_12618991_INS [dm6]	A	ATGGAA	3.530e^-4	0.917	DOWNSTREAM Galphaq INTRON Galphaq & 1 other
3L	3780298	3L_3780298_SNP [dm3] 3L_3780298_SNP [dm6]	A	C	3.531e^-4	0.917	INTRON CG32264
2R	14768629	2R_14768629_SNP [dm3] 2R_18881124_SNP [dm6]	A	C	3.545e^-4	0.917	INTRON sano
3L	1455078	3L_1455078_SNP [dm3] 3L_1455078_SNP [dm6]	C	A	3.549e^-4	0.917	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	3.550e^-4	0.917	INTRON fra
2L	16774502	2L_16774502_SNP [dm3] 2L_16774502_SNP [dm6]	G	A	3.553e^-4	0.917	NON_SYNONYMOUS_CODING Mhc
2L	11332605	2L_11332605_SNP [dm3] 2L_11332605_SNP [dm6]	C	T	3.554e^-4	0.917	INTRON CR44584
3L	14685490	3L_14685490_SNP [dm3] 3L_14692390_SNP [dm6]	T	C	3.558e^-4	0.917	DOWNSTREAM CG13477 INTRON ome
2L	12925930	2L_12925930_SNP [dm3] 2L_12925930_SNP [dm6]	C	A	3.559e^-4	0.917	DOWNSTREAM ACXA INTRON ACXE
3L	1848553	3L_1848553_SNP [dm3] 3L_1848553_SNP [dm6]	G	A	3.561e^-4	0.917	INTERGENIC
3L	16133858	3L_16133858_SNP [dm3] 3L_16140758_SNP [dm6]	T	G	3.564e^-4	0.917	SYNONYMOUS_CODING CG5151 UTR_3_PRIME CG32152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19404429	3R_19404429_SNP [dm3] 3R_23578707_SNP [dm6]	T	C	3.574e^-4	0.917	SYNONYMOUS_CODING beat-IV
3L	2007231	3L_2007231_SNP [dm3] 3L_2007231_SNP [dm6]	A	G	3.578e^-4	0.917	INTERGENIC
3L	9872993	3L_9872993_DEL [dm3] 3L_9879893_DEL [dm6]	TGATA	T	3.581e^-4	0.917	INTRON CG34382
3R	16903254	3R_16903254_SNP [dm3] 3R_21077532_SNP [dm6]	C	G	3.591e^-4	0.917	DOWNSTREAM dmrt93B INTRON HHEX
3L	14242149	3L_14242149_SNP [dm3] 3L_14249049_SNP [dm6]	T	G	3.593e^-4	0.917	INTERGENIC
2L	19291358	2L_19291358_DEL [dm3] 2L_19291358_DEL [dm6]	CGCCATTGGGG...	C	3.596e^-4	0.917	INTERGENIC
X	972033	X_972033_SNP [dm3] X_1078000_SNP [dm6]	A	T	3.609e^-4	0.917	INTRON CR44779 & 1 other
3R	17773099	3R_17773099_SNP [dm3] 3R_21947377_SNP [dm6]	T	C	3.610e^-4	0.917	INTERGENIC
3L	1568187	3L_1568187_SNP [dm3] 3L_1568187_SNP [dm6]	A	T	3.610e^-4	0.917	UPSTREAM CG12004 DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	15536950	X_15536950_INS [dm3] X_15642917_INS [dm6]	A	ACATAAACA	3.612e^-4	0.917	UPSTREAM CR44893 INTERGENIC
2R	7605870	2R_7605870_SNP [dm3] 2R_11718365_SNP [dm6]	T	C	3.622e^-4	0.917	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18997628	X_18997628_SNP [dm3] X_19103595_SNP [dm6]	T	A	3.623e^-4	0.917	INTERGENIC
X	14154044	X_14154044_SNP [dm3] X_14260011_SNP [dm6]	T	C	3.626e^-4	0.917	INTERGENIC
2R	8506498	2R_8506498_DEL [dm3] 2R_12618993_DEL [dm6]	TGTGTGCAGTTTACT...	T	3.634e^-4	0.917	DOWNSTREAM Galphaq INTRON Galphaq & 1 other
2R	8773660	2R_8773660_SNP [dm3] 2R_12886155_SNP [dm6]	A	T	3.639e^-4	0.917	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	9376600	3L_9376600_SNP [dm3] 3L_9383500_SNP [dm6]	A	C	3.641e^-4	0.917	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18728650	X_18728650_SNP [dm3] X_18834617_SNP [dm6]	T	G	3.644e^-4	0.917	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
2R	1919547	2R_1919547_SNP [dm3] 2R_6032042_SNP [dm6]	T	C	3.645e^-4	0.917	INTRON SCAP
3R	12238318	3R_12238318_SNP [dm3] 3R_16412596_SNP [dm6]	C	T	3.655e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3L	5575460	3L_5575460_SNP [dm3] 3L_5582360_SNP [dm6]	T	C	3.675e^-4	0.917	INTERGENIC
3L	11845835	3L_11845835_SNP [dm3] 3L_11852735_SNP [dm6]	A	T	3.678e^-4	0.917	INTRON CG44837
2L	5012323	2L_5012323_SNP [dm3] 2L_5012323_SNP [dm6]	T	G	3.684e^-4	0.917	UTR_3_PRIME vkg DOWNSTREAM CG3887	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14469464	2L_14469464_SNP [dm3] 2L_14469464_SNP [dm6]	T	C	3.689e^-4	0.917	INTERGENIC
3R	20555434	3R_20555434_SNP [dm3] 3R_24729712_SNP [dm6]	T	C	3.690e^-4	0.917	INTRON tok
X	971977	X_971977_SNP [dm3] X_1077944_SNP [dm6]	C	G	3.693e^-4	0.917	INTRON CR44779 & 1 other
3R	5942220	3R_5942220_SNP [dm3] 3R_10116498_SNP [dm6]	C	T	3.701e^-4	0.917	INTRON CG3940
X	11084158	X_11084158_SNP [dm3] X_11190125_SNP [dm6]	C	A	3.702e^-4	0.917	INTERGENIC
2L	19082840	2L_19082840_SNP [dm3] 2L_19082840_SNP [dm6]	C	A	3.707e^-4	0.917	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16685277	3L_16685277_DEL [dm3] 3L_16692177_DEL [dm6]	TTAAGTA	T	3.719e^-4	0.917	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
X	16982719	X_16982719_DEL [dm3] X_17088686_DEL [dm6]	ACTGAAATGGAA...	A	3.721e^-4	0.917	INTERGENIC
X	16982734	X_16982734_DEL [dm3] X_17088701_DEL [dm6]	CTGGACGGACATGGCCATAA...	C	3.721e^-4	0.917	INTERGENIC
X	10588789	X_10588789_SNP [dm3] X_10694756_SNP [dm6]	G	T	3.725e^-4	0.917	INTRON X11Lbeta
2R	11164562	2R_11164562_SNP [dm3] 2R_15277057_SNP [dm6]	C	A	3.725e^-4	0.917	INTRON Trpm
3L	6964566	3L_6964566_SNP [dm3] 3L_6971466_SNP [dm6]	C	T	3.727e^-4	0.917	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063
3R	13152347	3R_13152347_SNP [dm3] 3R_17326625_SNP [dm6]	A	T	3.732e^-4	0.917	INTRON beat-IIa
3R	22883245	3R_22883245_SNP [dm3] 3R_27057523_SNP [dm6]	T	G	3.740e^-4	0.917	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3L	7839920	3L_7839920_SNP [dm3] 3L_7846820_SNP [dm6]	C	A	3.743e^-4	0.917	INTRON Pdp1	regulatory region REDfly_CRMs
2L	9998255	2L_9998255_SNP [dm3] 2L_9998255_SNP [dm6]	A	G	3.743e^-4	0.917	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	14455161	3R_14455161_SNP [dm3] 3R_18629439_SNP [dm6]	G	A	3.749e^-4	0.917	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
2R	7116263	2R_7116263_SNP [dm3] 2R_11228758_SNP [dm6]	C	T	3.751e^-4	0.917	INTRON metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	18826714	3L_18826714_SNP [dm3] 3L_18833614_SNP [dm6]	T	C	3.753e^-4	0.917	INTRON Indy	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	1291273	2L_1291273_SNP [dm3] 2L_1291273_SNP [dm6]	C	G	3.755e^-4	0.917	INTRON robo3
2L	2420351	2L_2420351_SNP [dm3] 2L_2420351_SNP [dm6]	C	T	3.755e^-4	0.917	UPSTREAM CG34447 & 1 other INTERGENIC
3R	25175644	3R_25175644_SNP [dm3] 3R_29349922_SNP [dm6]	G	A	3.759e^-4	0.917	INTERGENIC
X	9838321	X_9838321_SNP [dm3] X_9944288_SNP [dm6]	T	A	3.769e^-4	0.917	INTERGENIC
3L	7940049	3L_7940049_SNP [dm3] 3L_7946949_SNP [dm6]	C	G	3.770e^-4	0.917	UPSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4239505	X_4239505_SNP [dm3] X_4345472_SNP [dm6]	T	A	3.774e^-4	0.917	INTRON norpA
3R	15331436	3R_15331436_SNP [dm3] 3R_19505714_SNP [dm6]	C	T	3.777e^-4	0.917	INTRON Dys
X	6122463	X_6122463_SNP [dm3] X_6228430_SNP [dm6]	T	C	3.785e^-4	0.917	INTRON CG14446	TF binding site mE1_TFBS_sens
2L	16992181	2L_16992181_SNP [dm3] 2L_16992181_SNP [dm6]	G	A	3.794e^-4	0.917	INTRON beat-IIIb
2L	9804413	2L_9804413_SNP [dm3] 2L_9804413_SNP [dm6]	G	A	3.801e^-4	0.917	INTRON nAChRalpha6
2R	11266988	2R_11266988_SNP [dm3] 2R_15379483_SNP [dm6]	C	T	3.812e^-4	0.917	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12238491	3R_12238491_SNP [dm3] 3R_16412769_SNP [dm6]	T	C	3.814e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3L	1768089	3L_1768089_SNP [dm3] 3L_1768089_SNP [dm6]	A	G	3.815e^-4	0.917	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12719769	2L_12719769_SNP [dm3] 2L_12719769_SNP [dm6]	C	A	3.825e^-4	0.917	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5575495	3L_5575495_SNP [dm3] 3L_5582395_SNP [dm6]	G	T	3.839e^-4	0.917	INTERGENIC
3R	8066592	3R_8066592_DEL [dm3] 3R_12240870_DEL [dm6]	CGAACTTAATCAACTTTTC...	C	3.840e^-4	0.917	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
2L	15237186	2L_15237186_SNP [dm3] 2L_15237186_SNP [dm6]	C	T	3.846e^-4	0.917	INTRON ZnT35C
2R	19429943	2R_19429943_SNP [dm3] 2R_23542420_SNP [dm6]	G	A	3.851e^-4	0.917	UPSTREAM Gr59f & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17499412	3L_17499412_SNP [dm3] 3L_17506312_SNP [dm6]	T	A	3.853e^-4	0.917	INTRON Oatp74D
3L	7196181	3L_7196181_SNP [dm3] 3L_7203081_SNP [dm6]	A	T	3.860e^-4	0.917	INTERGENIC
3L	14470535	3L_14470535_SNP [dm3] 3L_14477435_SNP [dm6]	G	A	3.866e^-4	0.917	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	17176379	2L_17176379_SNP [dm3] 2L_17176379_SNP [dm6]	C	T	3.870e^-4	0.917	UPSTREAM Gr36a EXON CR44394
2L	16301629	2L_16301629_SNP [dm3] 2L_16301629_SNP [dm6]	T	C	3.871e^-4	0.917	UTR_3_PRIME CG17328 DOWNSTREAM CG5869
3R	11386769	3R_11386769_SNP [dm3] 3R_15561047_SNP [dm6]	C	T	3.871e^-4	0.917	INTERGENIC
2R	13645632	2R_13645632_SNP [dm3] 2R_17758127_SNP [dm6]	G	T	3.871e^-4	0.917	SYNONYMOUS_CODING HLH54F	TF binding site BDTNP1_TFBS_twi
2R	13645755	2R_13645755_SNP [dm3] 2R_17758250_SNP [dm6]	C	A	3.871e^-4	0.917	SYNONYMOUS_CODING HLH54F	TF binding site BDTNP1_TFBS_twi
2R	16175334	2R_16175334_SNP [dm3] 2R_20287829_SNP [dm6]	C	G	3.872e^-4	0.917	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3L	14360958	3L_14360958_SNP [dm3] 3L_14367858_SNP [dm6]	G	A	3.887e^-4	0.917	UTR_3_PRIME fz
X	10588315	X_10588315_SNP [dm3] X_10694282_SNP [dm6]	G	A	3.891e^-4	0.917	INTRON X11Lbeta
3L	15917252	3L_15917252_SNP [dm3] 3L_15924152_SNP [dm6]	T	A	3.891e^-4	0.917	INTRON sff	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14316913	2R_14316913_SNP [dm3] 2R_18429408_SNP [dm6]	T	G	3.899e^-4	0.917	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
3R	26331645	3R_26331645_SNP [dm3] 3R_30505923_SNP [dm6]	T	G	3.905e^-4	0.917	UPSTREAM CG15539 & 2 others INTERGENIC
3L	14828381	3L_14828381_SNP [dm3] 3L_14835281_SNP [dm6]	T	C	3.915e^-4	0.917	INTRON CG17839
3R	12038823	3R_12038823_SNP [dm3] 3R_16213101_SNP [dm6]	G	A	3.919e^-4	0.917	UPSTREAM CR45642 INTERGENIC
3R	12383881	3R_12383881_SNP [dm3] 3R_16558159_SNP [dm6]	A	C	3.923e^-4	0.917	INTRON CG42342
3L	17706234	3L_17706234_SNP [dm3] 3L_17713134_SNP [dm6]	T	C	3.926e^-4	0.917	INTRON Ccn
3L	7478609	3L_7478609_SNP [dm3] 3L_7485509_SNP [dm6]	G	C	3.928e^-4	0.917	UPSTREAM mthl6 INTERGENIC
3L	14381619	3L_14381619_SNP [dm3] 3L_14388519_SNP [dm6]	A	C	3.933e^-4	0.917	INTERGENIC
3L	10274963	3L_10274963_SNP [dm3] 3L_10281863_SNP [dm6]	C	A	3.934e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13895337	3L_13895337_SNP [dm3] 3L_13902237_SNP [dm6]	A	G	3.935e^-4	0.917	UTR_5_PRIME dysc
X	17464466	X_17464466_SNP [dm3] X_17570433_SNP [dm6]	A	G	3.935e^-4	0.917	INTERGENIC
3L	2651856	3L_2651856_SNP [dm3] 3L_2651856_SNP [dm6]	T	C	3.939e^-4	0.917	UPSTREAM Snup & 2 others INTERGENIC
3R	14380884	3R_14380884_SNP [dm3] 3R_18555162_SNP [dm6]	T	C	3.943e^-4	0.917	INTERGENIC
2L	2538392	2L_2538392_SNP [dm3] 2L_2538392_SNP [dm6]	G	A	3.949e^-4	0.917	INTERGENIC
3L	12520237	3L_12520237_SNP [dm3] 3L_12527137_SNP [dm6]	T	A	3.950e^-4	0.917	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6857192	2L_6857192_SNP [dm3] 2L_6857192_SNP [dm6]	C	A	3.953e^-4	0.917	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3L	12730286	3L_12730286_SNP [dm3] 3L_12737186_SNP [dm6]	G	A	3.960e^-4	0.917	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16012404	3L_16012404_SNP [dm3] 3L_16019304_SNP [dm6]	A	G	3.969e^-4	0.917	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1723407	3R_1723407_SNP [dm3] 3R_5897685_SNP [dm6]	G	A	3.971e^-4	0.917	INTRON CG34113	TF binding site BDTNP1_TFBS_twi
3L	9864212	3L_9864212_INS [dm3] 3L_9871112_INS [dm6]	G	GTAATGTATA	3.973e^-4	0.917	DOWNSTREAM CG8108 INTERGENIC
2L	11307106	2L_11307106_SNP [dm3] 2L_11307106_SNP [dm6]	T	A	3.974e^-4	0.917	UPSTREAM CR43721 INTERGENIC
2R	19889233	2R_19889233_SNP [dm3] 2R_24001710_SNP [dm6]	G	C	3.974e^-4	0.917	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24332852	3R_24332852_SNP [dm3] 3R_28507130_SNP [dm6]	G	T	3.980e^-4	0.917	INTRON Dhc98D	TF binding site mE1_TFBS_cad
2L	12950039	2L_12950039_SNP [dm3] 2L_12950039_SNP [dm6]	A	T	3.981e^-4	0.917	INTERGENIC
3L	8766323	3L_8766323_SNP [dm3] 3L_8773223_SNP [dm6]	A	G	3.983e^-4	0.917	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
X	9592402	X_9592402_INS [dm3] X_9698369_INS [dm6]	G	GA	3.999e^-4	0.917	DOWNSTREAM btd INTERGENIC
2R	19215144	2R_19215144_SNP [dm3] 2R_23327621_SNP [dm6]	A	G	3.999e^-4	0.917	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
3L	12213285	3L_12213285_SNP [dm3] 3L_12220185_SNP [dm6]	A	T	4.001e^-4	0.917	UTR_5_PRIME app
3R	16163339	3R_16163339_SNP [dm3] 3R_20337617_SNP [dm6]	C	A	4.004e^-4	0.917	INTERGENIC
2L	15779848	2L_15779848_SNP [dm3] 2L_15779848_SNP [dm6]	C	T	4.028e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8690445	3L_8690445_DEL [dm3] 3L_8697345_DEL [dm6]	GGATAAATGCAAATGGTATT...	G	4.030e^-4	0.917	INTERGENIC
X	11112326	X_11112326_SNP [dm3] X_11218293_SNP [dm6]	G	C	4.046e^-4	0.917	INTERGENIC
3R	24333272	3R_24333272_SNP [dm3] 3R_28507550_SNP [dm6]	T	A	4.056e^-4	0.917	INTRON Dhc98D
3L	14754671	3L_14754671_SNP [dm3] 3L_14761571_SNP [dm6]	T	C	4.057e^-4	0.917	UPSTREAM CG9384 & 1 other INTRON CG33260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7272870	3L_7272870_SNP [dm3] 3L_7279770_SNP [dm6]	G	T	4.066e^-4	0.917	INTRON unc-13-4A
2L	2420542	2L_2420542_SNP [dm3] 2L_2420542_SNP [dm6]	T	G	4.068e^-4	0.917	UPSTREAM CG34447 & 1 other INTERGENIC
3R	7909351	3R_7909351_SNP [dm3] 3R_12083629_SNP [dm6]	A	T	4.073e^-4	0.917	INTRON CG14741
2L	6253824	2L_6253824_SNP [dm3] 2L_6253824_SNP [dm6]	G	A	4.074e^-4	0.917	INTRON Ddr	TF binding site mE1_TFBS_Trl
3R	11945188	3R_11945188_SNP [dm3] 3R_16119466_SNP [dm6]	C	G	4.077e^-4	0.917	INTRON Sb
2R	8512465	2R_8512465_SNP [dm3] 2R_12624960_SNP [dm6]	A	G	4.077e^-4	0.917	UPSTREAM CG17760 INTRON CG30054
2L	8792432	2L_8792432_SNP [dm3] 2L_8792432_SNP [dm6]	G	A	4.079e^-4	0.917	INTERGENIC
2L	9593167	2L_9593167_SNP [dm3] 2L_9593167_SNP [dm6]	C	G	4.084e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	7856930	3R_7856930_SNP [dm3] 3R_12031208_SNP [dm6]	C	G	4.096e^-4	0.917	NON_SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42504 & 1 other
X	15653590	X_15653590_SNP [dm3] X_15759557_SNP [dm6]	T	A	4.097e^-4	0.917	INTRON Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20814085	2L_20814085_SNP [dm3] 2L_20814085_SNP [dm6]	T	C	4.103e^-4	0.917	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	17523190	3L_17523190_SNP [dm3] 3L_17530090_SNP [dm6]	G	A	4.104e^-4	0.917	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8512468	2R_8512468_SNP [dm3] 2R_12624963_SNP [dm6]	A	C	4.106e^-4	0.917	UPSTREAM CG17760 INTRON CG30054
2R	14762879	2R_14762879_DEL [dm3] 2R_18875374_DEL [dm6]	CC	C	4.109e^-4	0.917	INTERGENIC
3L	15936937	3L_15936937_SNP [dm3] 3L_15943837_SNP [dm6]	C	A	4.116e^-4	0.917	INTRON Pka-C3
X	5595505	X_5595505_SNP [dm3] X_5701472_SNP [dm6]	T	A	4.117e^-4	0.917	INTRON CG4096
3R	7754698	3R_7754698_SNP [dm3] 3R_11928976_SNP [dm6]	A	C	4.117e^-4	0.917	INTRON Cad87A
2L	9591688	2L_9591688_SNP [dm3] 2L_9591688_SNP [dm6]	C	T	4.119e^-4	0.917	UTR_3_PRIME CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	15779227	2L_15779227_SNP [dm3] 2L_15779227_SNP [dm6]	C	T	4.126e^-4	0.917	INTERGENIC
3L	4586956	3L_4586956_SNP [dm3] 3L_4586956_SNP [dm6]	A	T	4.128e^-4	0.917	INTRON CG42540
3R	7857439	3R_7857439_SNP [dm3] 3R_12031717_SNP [dm6]	G	A	4.129e^-4	0.917	UTR_5_PRIME CG42504 & 2 others
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	4.130e^-4	0.917	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2R	9790925	2R_9790925_SNP [dm3] 2R_13903420_SNP [dm6]	T	C	4.133e^-4	0.917	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	9544627	3R_9544627_SNP [dm3] 3R_13718905_SNP [dm6]	A	T	4.137e^-4	0.917	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10893173	X_10893173_SNP [dm3] X_10999140_SNP [dm6]	T	C	4.138e^-4	0.917	INTRON CG42339
2R	13662247	2R_13662247_SNP [dm3] 2R_17774742_SNP [dm6]	G	A	4.140e^-4	0.917	UTR_3_PRIME fab1 & 1 other DOWNSTREAM fab1 & 1 other
2L	2873989	2L_2873989_SNP [dm3] 2L_2873989_SNP [dm6]	C	T	4.141e^-4	0.917	UTR_5_PRIME CG31694 UPSTREAM CG8814	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12923960	2L_12923960_SNP [dm3] 2L_12923960_SNP [dm6]	T	C	4.146e^-4	0.917	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2R	17166643	2R_17166643_SNP [dm3] 2R_21279138_SNP [dm6]	T	A	4.155e^-4	0.917	INTRON Rgk3
3R	7759971	3R_7759971_SNP [dm3] 3R_11934249_SNP [dm6]	A	T	4.156e^-4	0.917	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14929654	2L_14929654_SNP [dm3] 2L_14929654_SNP [dm6]	A	T	4.162e^-4	0.917	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	19811894	2L_19811894_SNP [dm3] 2L_19811894_SNP [dm6]	A	T	4.165e^-4	0.917	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1919565	2R_1919565_SNP [dm3] 2R_6032060_SNP [dm6]	T	A	4.165e^-4	0.917	INTRON SCAP
3L	9864957	3L_9864957_SNP [dm3] 3L_9871857_SNP [dm6]	A	G	4.168e^-4	0.917	INTERGENIC
3L	5907266	3L_5907266_SNP [dm3] 3L_5914166_SNP [dm6]	C	T	4.171e^-4	0.917	INTRON CG13288
2R	10497882	2R_10497882_SNP [dm3] 2R_14610377_SNP [dm6]	C	A	4.174e^-4	0.917	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9886823	2L_9886823_DEL [dm3] 2L_9886823_DEL [dm6]	AATAATATAAGTT...	A	4.186e^-4	0.917	UPSTREAM CR44701 & 1 other INTERGENIC
3R	12928969	3R_12928969_DEL [dm3] 3R_17103247_DEL [dm6]	TTCAATCCCATT...	T	4.187e^-4	0.917	INTRON cher
3R	12263246	3R_12263246_SNP [dm3] 3R_16437524_SNP [dm6]	C	A	4.189e^-4	0.917	UPSTREAM mRpS33 INTRON ema
2L	18615843	2L_18615843_SNP [dm3] 2L_18615843_SNP [dm6]	C	T	4.191e^-4	0.917	UTR_5_PRIME CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16889557	3R_16889557_DEL [dm3] 3R_21063835_DEL [dm6]	AA	A	4.203e^-4	0.917	SPLICE_SITE_REGION Cortactin INTRON Cortactin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	4587010	3L_4587010_SNP [dm3] 3L_4587010_SNP [dm6]	T	C	4.216e^-4	0.917	INTRON CG42540
3R	24756165	3R_24756165_SNP [dm3] 3R_28930443_SNP [dm6]	C	G	4.221e^-4	0.917	INTRON CG14521
3L	9864554	3L_9864554_SNP [dm3] 3L_9871454_SNP [dm6]	A	G	4.224e^-4	0.917	DOWNSTREAM CG8108 INTERGENIC
2L	15233108	2L_15233108_SNP [dm3] 2L_15233108_SNP [dm6]	A	T	4.230e^-4	0.917	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233110	2L_15233110_SNP [dm3] 2L_15233110_SNP [dm6]	T	C	4.230e^-4	0.917	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233113	2L_15233113_SNP [dm3] 2L_15233113_SNP [dm6]	T	C	4.230e^-4	0.917	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233115	2L_15233115_SNP [dm3] 2L_15233115_SNP [dm6]	A	G	4.230e^-4	0.917	INTRON ZnT35C	TF binding site mE1_TFBS_cad
X	4672375	X_4672375_SNP [dm3] X_4778342_SNP [dm6]	C	T	4.234e^-4	0.917	UPSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22306120	3R_22306120_SNP [dm3] 3R_26480398_SNP [dm6]	T	A	4.235e^-4	0.917	INTRON plum
3R	6860167	3R_6860167_SNP [dm3] 3R_11034445_SNP [dm6]	G	A	4.239e^-4	0.917	INTRON CG34114
2R	6243584	2R_6243584_SNP [dm3] 2R_10356079_SNP [dm6]	C	G	4.243e^-4	0.917	UPSTREAM CG12902 & 1 other DOWNSTREAM CG42733 INTRON CG42732
3L	15864798	3L_15864798_SNP [dm3] 3L_15871698_SNP [dm6]	A	G	4.245e^-4	0.917	INTRON pHCl
2R	16105104	2R_16105104_SNP [dm3] 2R_20217599_SNP [dm6]	A	T	4.247e^-4	0.917	INTERGENIC
3R	17209179	3R_17209179_SNP [dm3] 3R_21383457_SNP [dm6]	T	G	4.249e^-4	0.917	INTERGENIC
X	8062946	X_8062946_SNP [dm3] X_8168913_SNP [dm6]	T	G	4.250e^-4	0.917	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12977694	3L_12977694_SNP [dm3] 3L_12984594_SNP [dm6]	G	A	4.253e^-4	0.917	INTERGENIC
3R	11393074	3R_11393074_SNP [dm3] 3R_15567352_SNP [dm6]	A	G	4.273e^-4	0.917	INTERGENIC
2L	310727	2L_310727_SNP [dm3] 2L_310727_SNP [dm6]	T	C	4.280e^-4	0.917	INTRON Plc21C	TF binding site mE1_TFBS_Trl
3R	12246687	3R_12246687_SNP [dm3] 3R_16420965_SNP [dm6]	T	C	4.298e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12258119	3R_12258119_SNP [dm3] 3R_16432397_SNP [dm6]	A	G	4.298e^-4	0.917	NON_SYNONYMOUS_CODING CG31279 UPSTREAM CG17565 DOWNSTREAM tRNA:CR31282	TF binding site BDTNP1_TFBS_dl
3R	12268565	3R_12268565_SNP [dm3] 3R_16442843_SNP [dm6]	G	T	4.298e^-4	0.917	SYNONYMOUS_CODING CG14894 UPSTREAM CG14882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	8749727	3L_8749727_SNP [dm3] 3L_8756627_SNP [dm6]	G	A	4.307e^-4	0.917	NON_SYNONYMOUS_CODING CG6576 INTRON Fhos
2L	16680958	2L_16680958_SNP [dm3] 2L_16680958_SNP [dm6]	G	A	4.312e^-4	0.917	SYNONYMOUS_CODING squ DOWNSTREAM CG31807 INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	972291	X_972291_SNP [dm3] X_1078258_SNP [dm6]	G	C	4.312e^-4	0.917	INTRON CR44779 & 1 other
2L	1994778	2L_1994778_SNP [dm3] 2L_1994778_SNP [dm6]	T	G	4.317e^-4	0.917	INTERGENIC
3L	1235464	3L_1235464_SNP [dm3] 3L_1235464_SNP [dm6]	G	A	4.321e^-4	0.917	UPSTREAM CR45747 & 1 other DOWNSTREAM CG33966 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16219790	2L_16219790_SNP [dm3] 2L_16219790_SNP [dm6]	C	T	4.323e^-4	0.917	INTERGENIC
2R	9900138	2R_9900138_SNP [dm3] 2R_14012633_SNP [dm6]	C	T	4.328e^-4	0.917	INTRON mam
2L	13699585	2L_13699585_SNP [dm3] 2L_13699585_SNP [dm6]	G	T	4.338e^-4	0.917	INTRON CG31814
2R	12583077	2R_12583077_SNP [dm3] 2R_16695572_SNP [dm6]	G	T	4.338e^-4	0.917	INTRON CG30463
3L	2004753	3L_2004753_SNP [dm3] 3L_2004753_SNP [dm6]	G	A	4.343e^-4	0.917	DOWNSTREAM CG42841 INTRON CG42841
2R	3537326	2R_3537326_SNP [dm3] 2R_7649821_SNP [dm6]	C	A	4.346e^-4	0.917	UTR_3_PRIME CG43340 INTRON CG43340	insulator Insulator_Class_II.mE01
3R	7984472	3R_7984472_SNP [dm3] 3R_12158750_SNP [dm6]	T	C	4.352e^-4	0.917	UPSTREAM dpr15 INTERGENIC
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	4.355e^-4	0.917	INTRON sty
X	16878092	X_16878092_SNP [dm3] X_16984059_SNP [dm6]	T	A	4.357e^-4	0.917	INTRON CG45002
3R	26686155	3R_26686155_SNP [dm3] 3R_30860433_SNP [dm6]	G	A	4.360e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4215014	3L_4215014_SNP [dm3] 3L_4215014_SNP [dm6]	T	C	4.368e^-4	0.917	UPSTREAM Cpr64Ad INTRON CG43367
3R	15202515	3R_15202515_SNP [dm3] 3R_19376793_SNP [dm6]	C	T	4.377e^-4	0.917	UPSTREAM CG31404 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17018813	2L_17018813_SNP [dm3] 2L_17018813_SNP [dm6]	G	A	4.377e^-4	0.917	UPSTREAM CR45462 INTERGENIC
2L	17018817	2L_17018817_SNP [dm3] 2L_17018817_SNP [dm6]	A	G	4.377e^-4	0.917	UPSTREAM CR45462 INTERGENIC
2L	4483311	2L_4483311_SNP [dm3] 2L_4483311_SNP [dm6]	G	T	4.380e^-4	0.917	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6253893	2L_6253893_SNP [dm3] 2L_6253893_SNP [dm6]	T	G	4.385e^-4	0.917	INTRON Ddr	TF binding site mE1_TFBS_Trl
3R	23438331	3R_23438331_SNP [dm3] 3R_27612609_SNP [dm6]	G	A	4.390e^-4	0.917	UPSTREAM Tusp INTRON Tusp	TF binding site mE1_TFBS_inv
2L	16301820	2L_16301820_SNP [dm3] 2L_16301820_SNP [dm6]	C	T	4.393e^-4	0.917	UTR_3_PRIME CG5869 DOWNSTREAM CG17328
2R	13644893	2R_13644893_SNP [dm3] 2R_17757388_SNP [dm6]	G	T	4.406e^-4	0.917	UPSTREAM HLH54F & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14082784	3L_14082784_SNP [dm3] 3L_14089684_SNP [dm6]	T	C	4.411e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26646697	3R_26646697_SNP [dm3] 3R_30820975_SNP [dm6]	G	A	4.415e^-4	0.917	SYNONYMOUS_CODING cindr INTRON cindr	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12583541	2R_12583541_SNP [dm3] 2R_16696036_SNP [dm6]	G	T	4.416e^-4	0.917	INTRON CG30463
3L	7064955	3L_7064955_SNP [dm3] 3L_7071855_SNP [dm6]	C	G	4.421e^-4	0.917	INTRON CG8641
2L	15233111	2L_15233111_SNP [dm3] 2L_15233111_SNP [dm6]	A	C	4.422e^-4	0.917	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3R	20724740	3R_20724740_SNP [dm3] 3R_24899018_SNP [dm6]	G	C	4.426e^-4	0.917	SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10742270	X_10742270_SNP [dm3] X_10848237_SNP [dm6]	G	A	4.437e^-4	0.917	NON_SYNONYMOUS_CODING CG17333 UPSTREAM CG2202	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14598109	2R_14598109_SNP [dm3] 2R_18710604_SNP [dm6]	C	T	4.439e^-4	0.917	SYNONYMOUS_CODING CG15087 UPSTREAM pncr016:2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13386479	3L_13386479_SNP [dm3] 3L_13393379_SNP [dm6]	G	T	4.441e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	6857177	2L_6857177_SNP [dm3] 2L_6857177_SNP [dm6]	T	C	4.448e^-4	0.917	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	12268564	3R_12268564_SNP [dm3] 3R_16442842_SNP [dm6]	T	C	4.455e^-4	0.917	NON_SYNONYMOUS_CODING CG14894 UPSTREAM CG14882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	14659365	3R_14659365_SNP [dm3] 3R_18833643_SNP [dm6]	C	A	4.457e^-4	0.917	INTRON CG18208
3R	12038827	3R_12038827_SNP [dm3] 3R_16213105_SNP [dm6]	G	A	4.457e^-4	0.917	UPSTREAM CR45642 INTERGENIC
2L	19830428	2L_19830428_SNP [dm3] 2L_19830428_SNP [dm6]	G	C	4.458e^-4	0.917	INTRON sick
X	10742615	X_10742615_SNP [dm3] X_10848582_SNP [dm6]	T	C	4.461e^-4	0.917	UPSTREAM CG2202 DOWNSTREAM CG17333 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19493286	X_19493286_SNP [dm3] X_19599253_SNP [dm6]	C	T	4.465e^-4	0.917	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
X	18728592	X_18728592_SNP [dm3] X_18834559_SNP [dm6]	G	T	4.467e^-4	0.917	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
2L	14469561	2L_14469561_SNP [dm3] 2L_14469561_SNP [dm6]	A	C	4.468e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13058465	3L_13058465_SNP [dm3] 3L_13065365_SNP [dm6]	T	C	4.472e^-4	0.917	INTERGENIC
2L	9505425	2L_9505425_SNP [dm3] 2L_9505425_SNP [dm6]	G	A	4.474e^-4	0.917	INTRON CG33298
3L	13007577	3L_13007577_SNP [dm3] 3L_13014477_SNP [dm6]	T	G	4.478e^-4	0.917	NON_SYNONYMOUS_CODING MICAL-like	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	3777541	3L_3777541_SNP [dm3] 3L_3777541_SNP [dm6]	T	C	4.478e^-4	0.917	INTRON CG32264
2R	11661872	2R_11661872_SNP [dm3] 2R_15774367_SNP [dm6]	C	T	4.478e^-4	0.917	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	843452	3L_843452_SNP [dm3] 3L_843452_SNP [dm6]	G	T	4.489e^-4	0.917	UTR_3_PRIME Gr61a UPSTREAM CG13889
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	4.490e^-4	0.917	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3R	12038766	3R_12038766_SNP [dm3] 3R_16213044_SNP [dm6]	G	A	4.499e^-4	0.917	UPSTREAM CR45642 INTERGENIC
2R	20106889	2R_20106889_SNP [dm3] 2R_24219366_SNP [dm6]	C	T	4.502e^-4	0.917	INTRON CG30419
2R	20106955	2R_20106955_SNP [dm3] 2R_24219432_SNP [dm6]	G	A	4.502e^-4	0.917	INTRON CG30419
2R	16747757	2R_16747757_SNP [dm3] 2R_20860252_SNP [dm6]	T	A	4.511e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26121061	3R_26121061_SNP [dm3] 3R_30295339_SNP [dm6]	G	C	4.516e^-4	0.917	INTRON hdc
3L	6566637	3L_6566637_SNP [dm3] 3L_6573537_SNP [dm6]	G	A	4.522e^-4	0.917	INTRON CG18769 & 1 other
3L	8440756	3L_8440756_SNP [dm3] 3L_8447656_SNP [dm6]	A	G	4.524e^-4	0.917	INTRON CG6983
2L	15613853	2L_15613853_SNP [dm3] 2L_15613853_SNP [dm6]	G	A	4.532e^-4	0.917	UPSTREAM CG11864 DOWNSTREAM CG15254 INTERGENIC
2R	8276688	2R_8276688_SNP [dm3] 2R_12389183_SNP [dm6]	T	C	4.545e^-4	0.917	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6702535	3R_6702535_SNP [dm3] 3R_10876813_SNP [dm6]	G	A	4.547e^-4	0.917	DOWNSTREAM CR45195 INTRON Sodh-2	TF binding site mE1_TFBS_cad
2R	8515000	2R_8515000_SNP [dm3] 2R_12627495_SNP [dm6]	G	T	4.551e^-4	0.917	INTRON CG17760
X	4051086	X_4051086_SNP [dm3] X_4157053_SNP [dm6]	C	T	4.561e^-4	0.917	INTRON Fas2
2R	17400879	2R_17400879_SNP [dm3] 2R_21513374_SNP [dm6]	A	C	4.562e^-4	0.917	DOWNSTREAM MESK2 INTRON MESK2
3L	7771846	3L_7771846_SNP [dm3] 3L_7778746_SNP [dm6]	T	A	4.565e^-4	0.917	INTRON CG32369	TF binding site mE1_TFBS_chinmo
3L	2799868	3L_2799868_SNP [dm3] 3L_2799868_SNP [dm6]	A	T	4.569e^-4	0.917	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
X	16985562	X_16985562_SNP [dm3] X_17091529_SNP [dm6]	C	A	4.584e^-4	0.917	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20238752	3R_20238752_SNP [dm3] 3R_24413030_SNP [dm6]	A	T	4.586e^-4	0.917	INTRON nAChRalpha1
X	21070334	X_21070334_SNP [dm3] X_21199307_SNP [dm6]	T	C	4.598e^-4	0.917	INTERGENIC
3L	4586982	3L_4586982_SNP [dm3] 3L_4586982_SNP [dm6]	A	G	4.623e^-4	0.917	INTRON CG42540
3R	12038800	3R_12038800_SNP [dm3] 3R_16213078_SNP [dm6]	C	T	4.630e^-4	0.917	UPSTREAM CR45642 INTERGENIC
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	4.631e^-4	0.917	INTRON VAChT & 1 other
3R	15507576	3R_15507576_SNP [dm3] 3R_19681854_SNP [dm6]	C	T	4.635e^-4	0.917	INTRON Naam
2L	4907084	2L_4907084_INS [dm3] 2L_4907084_INS [dm6]	CTG	AATAA	4.640e^-4	0.917	UPSTREAM CG2837 INTERGENIC
3L	11424880	3L_11424880_INS [dm3] 3L_11431780_INS [dm6]	A	AACTA	4.642e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19460869	2R_19460869_SNP [dm3] 2R_23573346_SNP [dm6]	C	T	4.646e^-4	0.917	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15917145	3L_15917145_SNP [dm3] 3L_15924045_SNP [dm6]	C	T	4.648e^-4	0.917	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5865381	3R_5865381_SNP [dm3] 3R_10039659_SNP [dm6]	G	A	4.651e^-4	0.917	INTRON Mical
X	11213870	X_11213870_SNP [dm3] X_11319837_SNP [dm6]	T	C	4.651e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	18603287	2L_18603287_SNP [dm3] 2L_18603287_SNP [dm6]	A	T	4.659e^-4	0.917	INTRON CG10413
X	21068056	X_21068056_SNP [dm3] X_21197029_SNP [dm6]	G	A	4.662e^-4	0.917	INTERGENIC
2L	7745672	2L_7745672_DEL [dm3] 2L_7745672_DEL [dm6]	TTGGTGT	T	4.662e^-4	0.917	UPSTREAM CG7214 INTERGENIC
2L	19815293	2L_19815293_SNP [dm3] 2L_19815293_SNP [dm6]	A	C	4.666e^-4	0.917	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
3R	21916690	3R_21916690_SNP [dm3] 3R_26090968_SNP [dm6]	C	A	4.670e^-4	0.917	INTRON dys	regulatory region REDfly_CRMs
3R	8365958	3R_8365958_SNP [dm3] 3R_12540236_SNP [dm6]	C	A	4.670e^-4	0.917	INTRON Octbeta3R
2L	13049797	2L_13049797_SNP [dm3] 2L_13049797_SNP [dm6]	T	G	4.679e^-4	0.917	INTRON CG9932
3R	7759926	3R_7759926_SNP [dm3] 3R_11934204_SNP [dm6]	T	A	4.685e^-4	0.917	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10499310	X_10499310_SNP [dm3] X_10605277_SNP [dm6]	T	C	4.689e^-4	0.917	INTRON CG43347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2448934	2L_2448934_SNP [dm3] 2L_2448934_SNP [dm6]	C	T	4.691e^-4	0.917	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	19947372	3L_19947372_SNP [dm3] 3L_19954272_SNP [dm6]	C	T	4.691e^-4	0.917	UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
X	14522316	X_14522316_SNP [dm3] X_14628283_SNP [dm6]	T	C	4.700e^-4	0.917	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4737824	X_4737824_SNP [dm3] X_4843791_SNP [dm6]	G	A	4.709e^-4	0.917	INTRON CG42594
2R	9438127	2R_9438127_SNP [dm3] 2R_13550622_SNP [dm6]	T	A	4.722e^-4	0.917	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
X	16593332	X_16593332_SNP [dm3] X_16699299_SNP [dm6]	G	T	4.725e^-4	0.917	UTR_3_PRIME CG9676 INTRON CG4678
3L	6954299	3L_6954299_SNP [dm3] 3L_6961199_SNP [dm6]	G	A	4.728e^-4	0.917	SYNONYMOUS_CODING sgl
2L	17175847	2L_17175847_SNP [dm3] 2L_17175847_SNP [dm6]	G	C	4.729e^-4	0.917	UPSTREAM Gr36a EXON CR44394
2L	7517895	2L_7517895_SNP [dm3] 2L_7517895_SNP [dm6]	C	T	4.737e^-4	0.917	INTRON RapGAP1	TF binding site mE1_TFBS_chinmo
3L	7064952	3L_7064952_SNP [dm3] 3L_7071852_SNP [dm6]	G	C	4.747e^-4	0.917	INTRON CG8641
3R	2856694	3R_2856694_SNP [dm3] 3R_7030972_SNP [dm6]	A	T	4.747e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20238739	3R_20238739_SNP [dm3] 3R_24413017_SNP [dm6]	G	T	4.748e^-4	0.917	INTRON nAChRalpha1
3L	9198364	3L_9198364_SNP [dm3] 3L_9205264_SNP [dm6]	C	T	4.756e^-4	0.917	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14409796	2L_14409796_SNP [dm3] 2L_14409796_SNP [dm6]	C	A	4.757e^-4	0.917	UPSTREAM elB EXON CR44733	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10742627	X_10742627_SNP [dm3] X_10848594_SNP [dm6]	A	C	4.766e^-4	0.917	UPSTREAM CG2202 DOWNSTREAM CG17333 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9236704	2R_9236704_SNP [dm3] 2R_13349199_SNP [dm6]	A	C	4.772e^-4	0.917	INTRON CR44206	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15110905	2L_15110905_SNP [dm3] 2L_15110905_SNP [dm6]	C	G	4.773e^-4	0.917	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	4.773e^-4	0.917	SPLICE_SITE_REGION mbc INTRON mbc
3L	11845746	3L_11845746_SNP [dm3] 3L_11852646_SNP [dm6]	C	T	4.780e^-4	0.917	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	6600258	2L_6600258_SNP [dm3] 2L_6600258_SNP [dm6]	T	C	4.784e^-4	0.917	INTRON CG11319
3L	3266362	3L_3266362_SNP [dm3] 3L_3266362_SNP [dm6]	G	A	4.792e^-4	0.917	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8551481	3R_8551481_SNP [dm3] 3R_12725759_SNP [dm6]	G	A	4.800e^-4	0.917	INTERGENIC
3L	5878450	3L_5878450_SNP [dm3] 3L_5885350_SNP [dm6]	G	A	4.801e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	6384834	2R_6384834_SNP [dm3] 2R_10497329_SNP [dm6]	G	A	4.810e^-4	0.917	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	7752680	3R_7752680_SNP [dm3] 3R_11926958_SNP [dm6]	G	T	4.815e^-4	0.917	INTRON Cad87A
3L	1237126	3L_1237126_SNP [dm3] 3L_1237126_SNP [dm6]	G	T	4.815e^-4	0.917	DOWNSTREAM CG9192 INTRON CG9194
2L	756112	2L_756112_SNP [dm3] 2L_756112_SNP [dm6]	T	G	4.817e^-4	0.917	INTRON GABA-B-R3
2L	9572443	2L_9572443_SNP [dm3] 2L_9572443_SNP [dm6]	A	G	4.848e^-4	0.917	SYNONYMOUS_CODING CG3838
3R	16978830	3R_16978830_INS [dm3] 3R_21153108_INS [dm6]	T	TTG	4.849e^-4	0.917	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13036991	X_13036991_SNP [dm3] X_13142958_SNP [dm6]	C	A	4.857e^-4	0.917	INTRON CG32645
2L	1030019	2L_1030019_INS [dm3] 2L_1030019_INS [dm6]	C	CC	4.860e^-4	0.917	INTRON IA-2
2L	2531491	2L_2531491_INS [dm3] 2L_2531491_INS [dm6]	T	TT	4.863e^-4	0.917	INTERGENIC
3L	13480612	3L_13480612_SNP [dm3] 3L_13487512_SNP [dm6]	C	T	4.864e^-4	0.917	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	5866688	3R_5866688_SNP [dm3] 3R_10040966_SNP [dm6]	T	C	4.870e^-4	0.917	INTRON Mical
2L	9578032	2L_9578032_SNP [dm3] 2L_9578032_SNP [dm6]	G	A	4.874e^-4	0.917	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1
2L	758222	2L_758222_SNP [dm3] 2L_758222_SNP [dm6]	G	C	4.874e^-4	0.917	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16831948	2L_16831948_SNP [dm3] 2L_16831948_SNP [dm6]	G	T	4.874e^-4	0.917	UTR_3_PRIME CG31739 DOWNSTREAM CG13282 & 1 other
3L	2016579	3L_2016579_SNP [dm3] 3L_2016579_SNP [dm6]	C	T	4.881e^-4	0.917	INTERGENIC
3R	26142331	3R_26142331_SNP [dm3] 3R_30316609_SNP [dm6]	A	G	4.888e^-4	0.917	INTRON hdc
3L	15266446	3L_15266446_SNP [dm3] 3L_15273346_SNP [dm6]	C	A	4.889e^-4	0.917	INTERGENIC
3R	9999215	3R_9999215_SNP [dm3] 3R_14173493_SNP [dm6]	A	G	4.890e^-4	0.917	UTR_3_PRIME Dop1R1
3R	24333123	3R_24333123_SNP [dm3] 3R_28507401_SNP [dm6]	C	T	4.907e^-4	0.917	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
2L	9867922	2L_9867922_SNP [dm3] 2L_9867922_SNP [dm6]	A	G	4.914e^-4	0.917	INTRON nAChRalpha6
2L	5087414	2L_5087414_SNP [dm3] 2L_5087414_SNP [dm6]	G	C	4.916e^-4	0.917	INTRON pgant5
2R	8928834	2R_8928834_SNP [dm3] 2R_13041329_SNP [dm6]	G	A	4.917e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
X	16594799	X_16594799_SNP [dm3] X_16700766_SNP [dm6]	C	T	4.917e^-4	0.917	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
3L	820255	3L_820255_SNP [dm3] 3L_820255_SNP [dm6]	C	A	4.924e^-4	0.917	UPSTREAM CR43883 INTERGENIC
3R	14532321	3R_14532321_SNP [dm3] 3R_18706599_SNP [dm6]	C	T	4.932e^-4	0.917	INTRON VAChT & 1 other
X	12221592	X_12221592_SNP [dm3] X_12327559_SNP [dm6]	C	T	4.942e^-4	0.917	SYNONYMOUS_CODING Ten-a
3L	15988959	3L_15988959_SNP [dm3] 3L_15995859_SNP [dm6]	G	A	4.948e^-4	0.917	INTRON CG5830
2L	16831922	2L_16831922_SNP [dm3] 2L_16831922_SNP [dm6]	G	C	4.951e^-4	0.917	UTR_3_PRIME CG31739 DOWNSTREAM CG13282 & 1 other
3R	26488945	3R_26488945_SNP [dm3] 3R_30663223_SNP [dm6]	A	G	4.958e^-4	0.917	INTERGENIC
X	8339831	X_8339831_INS [dm3] X_8445798_INS [dm6]	T	TGCGGC	4.967e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1455392	X_1455392_SNP [dm3] X_1561359_SNP [dm6]	C	T	4.973e^-4	0.917	INTRON Mur2B
3R	7607180	3R_7607180_SNP [dm3] 3R_11781458_SNP [dm6]	G	T	4.980e^-4	0.917	UTR_3_PRIME CG17360 DOWNSTREAM CR45595	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4266574	2L_4266574_SNP [dm3] 2L_4266574_SNP [dm6]	G	T	4.984e^-4	0.917	INTERGENIC
X	5805604	X_5805604_SNP [dm3] X_5911571_SNP [dm6]	G	A	4.998e^-4	0.917	UTR_3_PRIME CG12236 INTRON CG12236
3R	22992743	3R_22992743_SNP [dm3] 3R_27167021_SNP [dm6]	T	A	5.012e^-4	0.917	UTR_3_PRIME spn-D	regulatory region REDfly_CRMs
3R	2773227	3R_2773227_SNP [dm3] 3R_6947505_SNP [dm6]	G	T	5.013e^-4	0.917	INTRON Antp	TF binding site mE1_TFBS_cad
3R	14672727	3R_14672727_SNP [dm3] 3R_18847005_SNP [dm6]	A	C	5.016e^-4	0.917	INTRON CG18208
3R	14455614	3R_14455614_SNP [dm3] 3R_18629892_SNP [dm6]	A	G	5.018e^-4	0.917	SYNONYMOUS_CODING CG14301 INTRON qin
3R	1570013	3R_1570013_SNP [dm3] 3R_5744291_SNP [dm6]	A	C	5.018e^-4	0.917	INTRON Madm
X	14686570	X_14686570_SNP [dm3] X_14792537_SNP [dm6]	A	G	5.024e^-4	0.917	INTRON rut
2L	11624560	2L_11624560_SNP [dm3] 2L_11624560_SNP [dm6]	G	T	5.026e^-4	0.917	UTR_3_PRIME kek2	TF binding site mE1_TFBS_cad
X	7434979	X_7434979_SNP [dm3] X_7540946_SNP [dm6]	A	G	5.026e^-4	0.917	INTRON CG32719
3R	12238347	3R_12238347_SNP [dm3] 3R_16412625_SNP [dm6]	C	T	5.028e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	19074240	2L_19074240_SNP [dm3] 2L_19074240_SNP [dm6]	T	C	5.038e^-4	0.917	UPSTREAM CG17572 DOWNSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2669771	2L_2669771_SNP [dm3] 2L_2669771_SNP [dm6]	G	A	5.042e^-4	0.917	UPSTREAM Gr23a INTERGENIC

By genomic position
Variant impact
Gene name

Activity_5min phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results