DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.230e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.00538
In_3R_P	0.03001

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	9.1756	0.0025
In_3R_P	7.3251	0.0257

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1560 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7624844	2L_7624844_INS [dm3] 2L_7624844_INS [dm6]	T	TCTCGCTGCTCCTCGCTGCA...	1.006e^-6	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	1.628e^-6	0.759	INTERGENIC
2R	17882103	2R_17882103_SNP [dm3] 2R_21994598_SNP [dm6]	T	G	1.865e^-6	0.759	INTRON CG34370
3L	12634892	3L_12634892_DEL [dm3] 3L_12641792_DEL [dm6]	AA	A	2.395e^-6	0.759	INTRON CR32111	TF binding site BDTNP1_TFBS_twi
2L	10826449	2L_10826449_SNP [dm3] 2L_10826449_SNP [dm6]	A	G	2.488e^-6	0.759	INTRON Nos
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	2.878e^-6	0.759	INTERGENIC
3L	11116612	3L_11116612_SNP [dm3] 3L_11123512_SNP [dm6]	C	A	4.661e^-6	0.759	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7624838	2L_7624838_MNP [dm3] 2L_7624838_MNP [dm6]	AGT	GCA	5.616e^-6	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7624383	2L_7624383_SNP [dm3] 2L_7624383_SNP [dm6]	G	C	5.764e^-6	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3235567	2L_3235567_SNP [dm3] 2L_3235567_SNP [dm6]	A	C	6.258e^-6	0.759	INTERGENIC
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	6.495e^-6	0.759	INTERGENIC
X	7056349	X_7056349_SNP [dm3] X_7162316_SNP [dm6]	T	A	6.730e^-6	0.759	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	7999255	X_7999255_SNP [dm3] X_8105222_SNP [dm6]	T	C	6.927e^-6	0.759	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17881936	2R_17881936_DEL [dm3] 2R_21994431_DEL [dm6]	TTTATGC	A	7.802e^-6	0.759	INTRON CG34370
2R	17881946	2R_17881946_SNP [dm3] 2R_21994441_SNP [dm6]	T	A	7.802e^-6	0.759	INTRON CG34370
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	8.343e^-6	0.759	INTRON rg & 1 other
2R	17881997	2R_17881997_SNP [dm3] 2R_21994492_SNP [dm6]	A	T	9.115e^-6	0.759	INTRON CG34370
2L	795482	2L_795482_SNP [dm3] 2L_795482_SNP [dm6]	T	C	9.902e^-6	0.759	INTERGENIC
X	3307656	X_3307656_SNP [dm3] X_3413623_SNP [dm6]	T	C	1.017e^-5	0.759	INTRON CR44999 & 1 other
X	3307677	X_3307677_SNP [dm3] X_3413644_SNP [dm6]	A	C	1.017e^-5	0.759	INTRON CR44999 & 1 other
2L	10826429	2L_10826429_SNP [dm3] 2L_10826429_SNP [dm6]	T	C	1.132e^-5	0.759	INTRON Nos
2L	6099239	2L_6099239_SNP [dm3] 2L_6099239_SNP [dm6]	C	T	1.177e^-5	0.759	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	12849231	X_12849231_INS [dm3] X_12955198_INS [dm6]	A	AGAAACACA	1.184e^-5	0.759	INTRON hec
3R	14971816	3R_14971816_SNP [dm3] 3R_19146094_SNP [dm6]	G	C	1.191e^-5	0.759	INTRON Ppcs
2L	3234118	2L_3234118_SNP [dm3] 2L_3234118_SNP [dm6]	A	G	1.199e^-5	0.759	INTERGENIC
2L	7622372	2L_7622372_INS [dm3] 2L_7622372_INS [dm6]	T	TT	1.287e^-5	0.759	INTERGENIC	TF binding site mE1_TFBS_cad
X	995120	X_995120_SNP [dm3] X_1101087_SNP [dm6]	G	T	1.320e^-5	0.759	INTRON CG3655
2R	11811658	2R_11811658_SNP [dm3] 2R_15924153_SNP [dm6]	G	A	1.367e^-5	0.759	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3L	11119712	3L_11119712_SNP [dm3] 3L_11126612_SNP [dm6]	T	A	1.385e^-5	0.759	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9176312	2R_9176312_SNP [dm3] 2R_13288807_SNP [dm6]	T	G	1.385e^-5	0.759	INTRON Dh31-R
2R	11811761	2R_11811761_SNP [dm3] 2R_15924256_SNP [dm6]	T	C	1.421e^-5	0.759	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	7624370	2L_7624370_SNP [dm3] 2L_7624370_SNP [dm6]	T	A	1.422e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17815177	2R_17815177_SNP [dm3] 2R_21927672_SNP [dm6]	A	G	1.444e^-5	0.759	INTRON Fili
3R	14971746	3R_14971746_SNP [dm3] 3R_19146024_SNP [dm6]	A	C	1.490e^-5	0.759	INTRON Ppcs
2R	17881794	2R_17881794_SNP [dm3] 2R_21994289_SNP [dm6]	A	G	1.558e^-5	0.759	INTRON CG34370
2R	17891813	2R_17891813_SNP [dm3] 2R_22004308_SNP [dm6]	G	T	1.570e^-5	0.759	INTRON CG34370
2L	7624399	2L_7624399_DEL [dm3] 2L_7624399_DEL [dm6]	ATATTCTTTCGAGTGAAT...	A	1.610e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7624424	2L_7624424_SNP [dm3] 2L_7624424_SNP [dm6]	G	A	1.610e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11806594	2R_11806594_SNP [dm3] 2R_15919089_SNP [dm6]	T	C	1.643e^-5	0.759	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11111333	3L_11111333_SNP [dm3] 3L_11118233_SNP [dm6]	T	G	1.650e^-5	0.759	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	10884654	2L_10884654_SNP [dm3] 2L_10884654_SNP [dm6]	C	G	1.659e^-5	0.759	INTERGENIC
3L	18548447	3L_18548447_SNP [dm3] 3L_18555347_SNP [dm6]	A	T	1.702e^-5	0.76	INTERGENIC
2L	7624421	2L_7624421_SNP [dm3] 2L_7624421_SNP [dm6]	T	A	1.857e^-5	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17561868	2R_17561868_SNP [dm3] 2R_21674363_SNP [dm6]	A	C	1.868e^-5	0.796	UPSTREAM CG30263 INTERGENIC
3L	11113494	3L_11113494_SNP [dm3] 3L_11120394_SNP [dm6]	G	A	2.068e^-5	0.796	UTR_5_PRIME fd68A UPSTREAM fd68A & 1 other INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2388349	2L_2388349_SNP [dm3] 2L_2388349_SNP [dm6]	T	C	2.069e^-5	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3235770	2L_3235770_SNP [dm3] 2L_3235770_SNP [dm6]	T	C	2.118e^-5	0.796	INTERGENIC
2R	15029928	2R_15029928_SNP [dm3] 2R_19142423_SNP [dm6]	T	C	2.128e^-5	0.796	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7624752	2L_7624752_SNP [dm3] 2L_7624752_SNP [dm6]	G	A	2.179e^-5	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	16816621	2L_16816621_SNP [dm3] 2L_16816621_SNP [dm6]	G	C	2.238e^-5	0.796	UPSTREAM mdy DOWNSTREAM CG13272 INTRON CG13280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18553467	3L_18553467_SNP [dm3] 3L_18560367_SNP [dm6]	A	G	2.292e^-5	0.796	UTR_5_PRIME AstC-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14535910	3R_14535910_SNP [dm3] 3R_18710188_SNP [dm6]	T	G	2.308e^-5	0.796	INTRON VAChT & 1 other
2R	11813093	2R_11813093_SNP [dm3] 2R_15925588_SNP [dm6]	T	A	2.386e^-5	0.796	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17578034	3L_17578034_SNP [dm3] 3L_17584934_SNP [dm6]	G	A	2.419e^-5	0.796	INTRON Eip74EF
X	15536343	X_15536343_SNP [dm3] X_15642310_SNP [dm6]	G	A	2.459e^-5	0.796	UPSTREAM CR44893 INTERGENIC
3L	8095862	3L_8095862_SNP [dm3] 3L_8102762_SNP [dm6]	G	T	2.504e^-5	0.796	INTRON Ect4	TF binding site mE1_TFBS_cad
3L	8095865	3L_8095865_SNP [dm3] 3L_8102765_SNP [dm6]	T	A	2.504e^-5	0.796	INTRON Ect4	TF binding site mE1_TFBS_cad
3L	8095872	3L_8095872_SNP [dm3] 3L_8102772_SNP [dm6]	T	A	2.504e^-5	0.796	INTRON Ect4	TF binding site mE1_TFBS_cad
3L	8095903	3L_8095903_SNP [dm3] 3L_8102803_SNP [dm6]	C	T	2.504e^-5	0.796	INTRON Ect4	TF binding site mE1_TFBS_cad
2L	786885	2L_786885_SNP [dm3] 2L_786885_SNP [dm6]	G	A	2.647e^-5	0.827	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3233453	2L_3233453_SNP [dm3] 2L_3233453_SNP [dm6]	C	A	2.763e^-5	0.829	INTERGENIC
2R	18911411	2R_18911411_SNP [dm3] 2R_23023888_SNP [dm6]	T	C	2.788e^-5	0.829	INTRON twi & 1 other
2R	11811464	2R_11811464_SNP [dm3] 2R_15923959_SNP [dm6]	A	G	2.798e^-5	0.829	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	4266251	2L_4266251_INS [dm3] 2L_4266251_INS [dm6]	G	GG	2.830e^-5	0.829	INTERGENIC
3R	14971748	3R_14971748_SNP [dm3] 3R_19146026_SNP [dm6]	T	C	2.910e^-5	0.839	INTRON Ppcs
2L	7621233	2L_7621233_SNP [dm3] 2L_7621233_SNP [dm6]	A	C	3.057e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	3.231e^-5	0.875	INTRON klar
3L	18518898	3L_18518898_SNP [dm3] 3L_18525798_SNP [dm6]	T	A	3.238e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_run
2L	7623436	2L_7623436_SNP [dm3] 2L_7623436_SNP [dm6]	T	A	3.260e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5467731	X_5467731_SNP [dm3] X_5573698_SNP [dm6]	A	G	3.326e^-5	0.875	INTERGENIC
3L	8672398	3L_8672398_SNP [dm3] 3L_8679298_SNP [dm6]	C	T	3.371e^-5	0.875	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
2R	17891814	2R_17891814_SNP [dm3] 2R_22004309_SNP [dm6]	C	T	3.401e^-5	0.875	INTRON CG34370
3L	18553427	3L_18553427_SNP [dm3] 3L_18560327_SNP [dm6]	C	T	3.406e^-5	0.875	UTR_5_PRIME AstC-R1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17554351	2R_17554351_SNP [dm3] 2R_21666846_SNP [dm6]	A	G	3.482e^-5	0.877	UTR_5_PRIME CG42365 DOWNSTREAM CG42362 & 6 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12816628	2L_12816628_SNP [dm3] 2L_12816628_SNP [dm6]	A	G	3.509e^-5	0.877	DOWNSTREAM kek1 INTERGENIC
3L	2850850	3L_2850850_SNP [dm3] 3L_2850850_SNP [dm6]	T	A	3.614e^-5	0.879	INTRON CG43444	TF binding site mE1_TFBS_cad
2R	11813027	2R_11813027_SNP [dm3] 2R_15925522_SNP [dm6]	A	G	3.638e^-5	0.879	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19050983	X_19050983_SNP [dm3] X_19156950_SNP [dm6]	C	G	3.658e^-5	0.879	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2L	830888	2L_830888_SNP [dm3] 2L_830888_SNP [dm6]	G	A	3.710e^-5	0.881	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad
2R	17878675	2R_17878675_SNP [dm3] 2R_21991170_SNP [dm6]	C	T	3.848e^-5	0.902	INTRON CG34370
2R	19247692	2R_19247692_SNP [dm3] 2R_23360169_SNP [dm6]	T	C	3.991e^-5	0.912	SYNONYMOUS_CODING CG34424 DOWNSTREAM vir & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16819474	2L_16819474_SNP [dm3] 2L_16819474_SNP [dm6]	A	C	4.005e^-5	0.912	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
2L	9146901	2L_9146901_SNP [dm3] 2L_9146901_SNP [dm6]	G	A	4.043e^-5	0.912	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13267905	3L_13267905_SNP [dm3] 3L_13274805_SNP [dm6]	G	A	4.159e^-5	0.912	INTRON caps	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	10464115	2L_10464115_SNP [dm3] 2L_10464115_SNP [dm6]	C	T	4.194e^-5	0.912	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
X	9235757	X_9235757_SNP [dm3] X_9341724_SNP [dm6]	G	T	4.212e^-5	0.912	INTRON CG34449
2R	3693195	2R_3693195_INS [dm3] 2R_7805690_INS [dm6]	C	CC	4.290e^-5	0.912	UPSTREAM sax & 1 other INTRON Nop17l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	7626997	2L_7626997_SNP [dm3] 2L_7626997_SNP [dm6]	A	T	4.294e^-5	0.912	INTERGENIC
2R	17881879	2R_17881879_SNP [dm3] 2R_21994374_SNP [dm6]	T	C	4.402e^-5	0.912	INTRON CG34370
2R	17878704	2R_17878704_SNP [dm3] 2R_21991199_SNP [dm6]	G	A	4.439e^-5	0.912	INTRON CG34370
2R	10667238	2R_10667238_SNP [dm3] 2R_14779733_SNP [dm6]	G	A	4.499e^-5	0.912	INTRON kn	TF binding site BDTNP1_TFBS_z
X	13060061	X_13060061_SNP [dm3] X_13166028_SNP [dm6]	G	A	4.546e^-5	0.912	INTRON CG34411
2L	9673711	2L_9673711_INS [dm3] 2L_9673711_INS [dm6]	G	GGA	4.618e^-5	0.912	INTERGENIC
3L	18534696	3L_18534696_SNP [dm3] 3L_18541596_SNP [dm6]	T	C	4.792e^-5	0.912	INTERGENIC
2R	11813141	2R_11813141_SNP [dm3] 2R_15925636_SNP [dm6]	A	G	4.866e^-5	0.912	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13716126	2L_13716126_SNP [dm3] 2L_13716126_SNP [dm6]	A	G	4.956e^-5	0.912	INTRON CG31814
3L	19016289	3L_19016289_SNP [dm3] 3L_19023189_SNP [dm6]	G	T	4.961e^-5	0.912	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3R	20614794	3R_20614794_SNP [dm3] 3R_24789072_SNP [dm6]	G	A	4.971e^-5	0.912	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24263324	3R_24263324_SNP [dm3] 3R_28437602_SNP [dm6]	T	G	4.993e^-5	0.912	INTRON beat-VI
2L	7044111	2L_7044111_SNP [dm3] 2L_7044111_SNP [dm6]	A	C	5.085e^-5	0.912	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17881900	2R_17881900_SNP [dm3] 2R_21994395_SNP [dm6]	T	C	5.089e^-5	0.912	INTRON CG34370
3L	7208671	3L_7208671_SNP [dm3] 3L_7215571_SNP [dm6]	G	A	5.152e^-5	0.912	INTERGENIC
2L	799154	2L_799154_SNP [dm3] 2L_799154_SNP [dm6]	G	T	5.155e^-5	0.912	UPSTREAM CR45259 INTERGENIC
3L	8399455	3L_8399455_SNP [dm3] 3L_8406355_SNP [dm6]	A	C	5.160e^-5	0.912	SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
3R	20853779	3R_20853779_SNP [dm3] 3R_25028057_SNP [dm6]	T	C	5.168e^-5	0.912	INTRON Hr96
3L	18538852	3L_18538852_SNP [dm3] 3L_18545752_SNP [dm6]	C	T	5.172e^-5	0.912	INTERGENIC
X	9235700	X_9235700_SNP [dm3] X_9341667_SNP [dm6]	C	T	5.205e^-5	0.912	INTRON CG34449
3L	11120559	3L_11120559_SNP [dm3] 3L_11127459_SNP [dm6]	A	G	5.413e^-5	0.933	INTRON CG42575
3R	20853780	3R_20853780_SNP [dm3] 3R_25028058_SNP [dm6]	C	A	5.580e^-5	0.933	INTRON Hr96
X	9637721	X_9637721_SNP [dm3] X_9743688_SNP [dm6]	T	A	5.593e^-5	0.933	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	2792446	3L_2792446_SNP [dm3] 3L_2792446_SNP [dm6]	G	A	5.603e^-5	0.933	INTRON CG43444	TF binding site mE1_TFBS_cad
2R	17554332	2R_17554332_SNP [dm3] 2R_21666827_SNP [dm6]	T	A	5.666e^-5	0.933	UTR_5_PRIME CG42365 DOWNSTREAM CG42362 & 6 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18544618	3L_18544618_SNP [dm3] 3L_18551518_SNP [dm6]	T	G	5.684e^-5	0.933	INTERGENIC
3L	8399399	3L_8399399_SNP [dm3] 3L_8406299_SNP [dm6]	A	G	5.684e^-5	0.933	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
2L	9673714	2L_9673714_DEL [dm3] 2L_9673714_DEL [dm6]	AA	A	5.722e^-5	0.933	INTERGENIC
3R	10685310	3R_10685310_SNP [dm3] 3R_14859588_SNP [dm6]	A	C	5.946e^-5	0.952	NON_SYNONYMOUS_CODING btsz
2L	17361511	2L_17361511_SNP [dm3] 2L_17361511_SNP [dm6]	C	T	5.950e^-5	0.952	EXON CR44346
3L	22855030	3L_22855030_SNP [dm3] 3L_22861930_SNP [dm6]	T	C	5.989e^-5	0.952	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	17882247	2R_17882247_SNP [dm3] 2R_21994742_SNP [dm6]	A	G	6.101e^-5	0.955	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_inv
X	9637173	X_9637173_SNP [dm3] X_9743140_SNP [dm6]	C	T	6.114e^-5	0.955	INTRON Sp1
2L	3021984	2L_3021984_SNP [dm3] 2L_3021984_SNP [dm6]	C	A	6.221e^-5	0.963	SYNONYMOUS_CODING alpha4GT1 DOWNSTREAM CG17264
3R	26051540	3R_26051540_DEL [dm3] 3R_30225818_DEL [dm6]	TAATAG	T	6.298e^-5	0.963	INTERGENIC
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	6.370e^-5	0.963	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9452635	2L_9452635_INS [dm3] 2L_9452635_INS [dm6]	T	TAACAGCA	6.531e^-5	0.963	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	10558264	2L_10558264_SNP [dm3] 2L_10558264_SNP [dm6]	A	T	6.543e^-5	0.963	INTRON Trim9	TF binding site mE1_TFBS_inv
2L	6099328	2L_6099328_SNP [dm3] 2L_6099328_SNP [dm6]	A	T	6.695e^-5	0.963	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17891816	2R_17891816_SNP [dm3] 2R_22004311_SNP [dm6]	A	T	6.795e^-5	0.963	INTRON CG34370
2R	15682573	2R_15682573_SNP [dm3] 2R_19795068_SNP [dm6]	G	A	6.878e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18557301	3L_18557301_SNP [dm3] 3L_18564201_SNP [dm6]	T	G	6.899e^-5	0.963	INTRON AstC-R1
2L	6099067	2L_6099067_SNP [dm3] 2L_6099067_SNP [dm6]	G	C	6.982e^-5	0.963	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13835738	3R_13835738_SNP [dm3] 3R_18010016_SNP [dm6]	G	A	7.048e^-5	0.963	NON_SYNONYMOUS_CODING cpo	TF binding site BDTNP1_TFBS_da
2R	17891829	2R_17891829_SNP [dm3] 2R_22004324_SNP [dm6]	T	C	7.056e^-5	0.963	INTRON CG34370
3R	2585079	3R_2585079_SNP [dm3] 3R_6759357_SNP [dm6]	T	A	7.101e^-5	0.963	UTR_5_PRIME bcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	16999839	3R_16999839_SNP [dm3] 3R_21174117_SNP [dm6]	C	A	7.117e^-5	0.963	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19247655	2R_19247655_SNP [dm3] 2R_23360132_SNP [dm6]	A	G	7.125e^-5	0.963	SYNONYMOUS_CODING CG34424 DOWNSTREAM vir & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6809676	X_6809676_DEL [dm3] X_6915643_DEL [dm6]	TGGCTT	T	7.137e^-5	0.963	INTRON CG14431
2R	17879532	2R_17879532_SNP [dm3] 2R_21992027_SNP [dm6]	G	C	7.144e^-5	0.963	INTRON CG34370
2R	4448237	2R_4448237_DEL [dm3] 2R_8560732_DEL [dm6]	TT	T	7.188e^-5	0.963	INTERGENIC
3L	1294483	3L_1294483_SNP [dm3] 3L_1294483_SNP [dm6]	C	T	7.256e^-5	0.963	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
3L	17541705	3L_17541705_SNP [dm3] 3L_17548605_SNP [dm6]	C	G	7.261e^-5	0.963	SYNONYMOUS_CODING Jon74E
X	3307628	X_3307628_SNP [dm3] X_3413595_SNP [dm6]	C	T	7.270e^-5	0.963	INTRON CR44999 & 1 other
2L	7623627	2L_7623627_SNP [dm3] 2L_7623627_SNP [dm6]	C	T	7.332e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11815188	2R_11815188_SNP [dm3] 2R_15927683_SNP [dm6]	A	G	7.362e^-5	0.963	UTR_5_PRIME bdg INTRON bdg	TF binding site mE1_TFBS_cad
2L	1987864	2L_1987864_SNP [dm3] 2L_1987864_SNP [dm6]	A	C	7.398e^-5	0.963	UPSTREAM Got2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	822210	3L_822210_SNP [dm3] 3L_822210_SNP [dm6]	C	T	7.681e^-5	0.987	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11747381	3L_11747381_DEL [dm3] 3L_11754281_DEL [dm6]	GGACACAG	G	7.690e^-5	0.987	INTRON CG6024
X	7261241	X_7261241_SNP [dm3] X_7367208_SNP [dm6]	T	C	7.848e^-5	0.987	INTRON CG1677 & 1 other
X	7263807	X_7263807_SNP [dm3] X_7369774_SNP [dm6]	C	G	7.947e^-5	0.987	INTRON CG1677 & 1 other
2R	11815203	2R_11815203_SNP [dm3] 2R_15927698_SNP [dm6]	C	A	7.990e^-5	0.987	UTR_5_PRIME bdg INTRON bdg	TF binding site mE1_TFBS_cad
3R	2585426	3R_2585426_SNP [dm3] 3R_6759704_SNP [dm6]	C	T	8.027e^-5	0.987	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	19050977	X_19050977_SNP [dm3] X_19156944_SNP [dm6]	T	C	8.103e^-5	0.987	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2R	8463699	2R_8463699_SNP [dm3] 2R_12576194_SNP [dm6]	A	G	8.128e^-5	0.987	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
2L	8231590	2L_8231590_SNP [dm3] 2L_8231590_SNP [dm6]	A	G	8.269e^-5	0.987	UPSTREAM Pvr INTRON Pvr
2L	17226193	2L_17226193_SNP [dm3] 2L_17226193_SNP [dm6]	A	T	8.289e^-5	0.987	INTRON beat-IIIc
3L	5405260	3L_5405260_DEL [dm3] 3L_5412160_DEL [dm6]	AGCTTGTAACCAG...	A	8.294e^-5	0.987	INTERGENIC
2R	12725976	2R_12725976_SNP [dm3] 2R_16838471_SNP [dm6]	G	C	8.306e^-5	0.987	EXON CR43650	TF binding site BDTNP1_TFBS_Med
2L	8660055	2L_8660055_SNP [dm3] 2L_8660055_SNP [dm6]	A	G	8.453e^-5	0.987	INTRON Sema-1a
3L	18559702	3L_18559702_SNP [dm3] 3L_18566602_SNP [dm6]	C	G	8.512e^-5	0.987	INTRON AstC-R1
2L	9418793	2L_9418793_SNP [dm3] 2L_9418793_SNP [dm6]	T	A	8.515e^-5	0.987	INTRON Mco1
2L	9767687	2L_9767687_SNP [dm3] 2L_9767687_SNP [dm6]	C	T	8.643e^-5	0.987	SYNONYMOUS_CODING CG4017 INTRON ppk18	TF binding site mE1_TFBS_sens
3L	5403416	3L_5403416_SNP [dm3] 3L_5410316_SNP [dm6]	C	T	8.648e^-5	0.987	INTERGENIC
3L	18554274	3L_18554274_SNP [dm3] 3L_18561174_SNP [dm6]	C	T	8.649e^-5	0.987	INTRON AstC-R1
2L	7625005	2L_7625005_SNP [dm3] 2L_7625005_SNP [dm6]	C	T	8.653e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24083525	3R_24083525_SNP [dm3] 3R_28257803_SNP [dm6]	T	C	8.712e^-5	0.987	INTERGENIC
3R	4001952	3R_4001952_SNP [dm3] 3R_8176230_SNP [dm6]	C	T	8.712e^-5	0.987	INTRON grn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	19065094	X_19065094_SNP [dm3] X_19171061_SNP [dm6]	G	A	8.936e^-5	0.987	UPSTREAM Inx5 DOWNSTREAM pncr004:X INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	390462	2L_390462_SNP [dm3] 2L_390462_SNP [dm6]	G	T	8.938e^-5	0.987	INTERGENIC
3L	18534706	3L_18534706_SNP [dm3] 3L_18541606_SNP [dm6]	G	C	9.031e^-5	0.987	INTERGENIC
X	15737797	X_15737797_SNP [dm3] X_15843764_SNP [dm6]	G	C	9.043e^-5	0.987	NON_SYNONYMOUS_CODING Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18036171	3L_18036171_SNP [dm3] 3L_18043071_SNP [dm6]	C	T	9.154e^-5	0.987	SYNONYMOUS_CODING CG42393 INTRON Eip75B
2L	7621574	2L_7621574_SNP [dm3] 2L_7621574_SNP [dm6]	C	A	9.252e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	9775960	3L_9775960_SNP [dm3] 3L_9782860_SNP [dm6]	T	A	9.268e^-5	0.987	INTRON CG8177
2L	14081560	2L_14081560_SNP [dm3] 2L_14081560_SNP [dm6]	C	T	9.286e^-5	0.987	INTRON nAChRalpha5
2R	18235678	2R_18235678_SNP [dm3] 2R_22348173_SNP [dm6]	G	A	9.313e^-5	0.987	UPSTREAM CG11298 INTRON Liprin-gamma
3R	16999837	3R_16999837_SNP [dm3] 3R_21174115_SNP [dm6]	A	T	9.511e^-5	0.987	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10782434	X_10782434_SNP [dm3] X_10888401_SNP [dm6]	T	A	9.520e^-5	0.987	INTRON Ork1	TF binding site mE1_TFBS_inv
3R	24263429	3R_24263429_SNP [dm3] 3R_28437707_SNP [dm6]	C	T	9.528e^-5	0.987	INTRON beat-VI
2R	17879262	2R_17879262_SNP [dm3] 2R_21991757_SNP [dm6]	A	T	9.535e^-5	0.987	INTRON CG34370
2R	17879763	2R_17879763_SNP [dm3] 2R_21992258_SNP [dm6]	C	T	9.535e^-5	0.987	INTRON CG34370
2R	17880775	2R_17880775_SNP [dm3] 2R_21993270_SNP [dm6]	A	G	9.535e^-5	0.987	INTRON CG34370
3L	12434956	3L_12434956_SNP [dm3] 3L_12441856_SNP [dm6]	G	A	9.557e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15836155	X_15836155_INS [dm3] X_15942122_INS [dm6]	A	AAA	9.607e^-5	0.987	INTRON CG8924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18723260	3L_18723260_SNP [dm3] 3L_18730160_SNP [dm6]	T	C	9.667e^-5	0.987	INTERGENIC
2L	12592136	2L_12592136_SNP [dm3] 2L_12592136_SNP [dm6]	T	C	9.688e^-5	0.987	INTRON nub
3R	26051533	3R_26051533_SNP [dm3] 3R_30225811_SNP [dm6]	G	A	9.774e^-5	0.991	INTERGENIC
X	15019598	X_15019598_SNP [dm3] X_15125565_SNP [dm6]	A	T	9.891e^-5	0.997	UPSTREAM drd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16139776	3R_16139776_SNP [dm3] 3R_20314054_SNP [dm6]	G	T	1.006e^-4	1	INTRON CG42668
2L	3240634	2L_3240634_SNP [dm3] 2L_3240634_SNP [dm6]	G	A	1.033e^-4	1	INTERGENIC
X	9235879	X_9235879_SNP [dm3] X_9341846_SNP [dm6]	G	A	1.051e^-4	1	INTRON CG34449
X	3306684	X_3306684_SNP [dm3] X_3412651_SNP [dm6]	G	C	1.055e^-4	1	INTRON CR44999 & 1 other
2L	14081546	2L_14081546_SNP [dm3] 2L_14081546_SNP [dm6]	C	T	1.056e^-4	1	INTRON nAChRalpha5
2L	19230453	2L_19230453_SNP [dm3] 2L_19230453_SNP [dm6]	A	G	1.059e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	22766419	3R_22766419_SNP [dm3] 3R_26940697_SNP [dm6]	G	A	1.075e^-4	1	INTRON sda
2L	3238011	2L_3238011_SNP [dm3] 2L_3238011_SNP [dm6]	G	C	1.086e^-4	1	INTERGENIC
2L	799147	2L_799147_SNP [dm3] 2L_799147_SNP [dm6]	A	G	1.089e^-4	1	UPSTREAM CR45259 INTERGENIC
2L	10884692	2L_10884692_SNP [dm3] 2L_10884692_SNP [dm6]	C	A	1.089e^-4	1	INTERGENIC
2R	12216450	2R_12216450_SNP [dm3] 2R_16328945_SNP [dm6]	A	G	1.098e^-4	1	INTRON Vha44
2R	9172892	2R_9172892_SNP [dm3] 2R_13285387_SNP [dm6]	C	T	1.099e^-4	1	INTRON Dh31-R
2L	7623649	2L_7623649_SNP [dm3] 2L_7623649_SNP [dm6]	G	A	1.100e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5582386	3L_5582386_SNP [dm3] 3L_5589286_SNP [dm6]	C	T	1.111e^-4	1	SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
2L	7621692	2L_7621692_SNP [dm3] 2L_7621692_SNP [dm6]	C	T	1.112e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	17368553	2L_17368553_SNP [dm3] 2L_17368553_SNP [dm6]	C	A	1.114e^-4	1	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17877581	2R_17877581_SNP [dm3] 2R_21990076_SNP [dm6]	T	C	1.118e^-4	1	INTRON CG34370
2R	17542008	2R_17542008_SNP [dm3] 2R_21654503_SNP [dm6]	C	T	1.121e^-4	1	INTRON CG10082	TF binding site mE1_TFBS_cad
2L	7929909	2L_7929909_SNP [dm3] 2L_7929909_SNP [dm6]	T	A	1.127e^-4	1	INTRON Snoo
2R	11807047	2R_11807047_SNP [dm3] 2R_15919542_SNP [dm6]	G	A	1.129e^-4	1	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3307719	X_3307719_SNP [dm3] X_3413686_SNP [dm6]	A	T	1.141e^-4	1	INTRON CR44999 & 1 other
2L	3234735	2L_3234735_SNP [dm3] 2L_3234735_SNP [dm6]	C	T	1.142e^-4	1	INTERGENIC
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	1.144e^-4	1	SYNONYMOUS_CODING Or65a
X	8648161	X_8648161_SNP [dm3] X_8754128_SNP [dm6]	A	T	1.145e^-4	1	INTERGENIC
2R	17879662	2R_17879662_INS [dm3] 2R_21992157_INS [dm6]	C	CC	1.150e^-4	1	INTRON CG34370
3L	18956963	3L_18956963_SNP [dm3] 3L_18963863_SNP [dm6]	A	T	1.183e^-4	1	INTERGENIC
3R	16121669	3R_16121669_SNP [dm3] 3R_20295947_SNP [dm6]	C	A	1.187e^-4	1	SYNONYMOUS_CODING cic	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7624836	2L_7624836_SNP [dm3] 2L_7624836_SNP [dm6]	A	G	1.193e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	11119258	3L_11119258_SNP [dm3] 3L_11126158_SNP [dm6]	T	C	1.193e^-4	1	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19977604	2L_19977604_SNP [dm3] 2L_19977604_SNP [dm6]	C	T	1.203e^-4	1	INTRON CG43861
2R	17561859	2R_17561859_SNP [dm3] 2R_21674354_SNP [dm6]	T	C	1.204e^-4	1	UPSTREAM CG30263 INTERGENIC
3L	12404859	3L_12404859_SNP [dm3] 3L_12411759_SNP [dm6]	T	A	1.214e^-4	1	INTRON CG32103
3L	18723259	3L_18723259_SNP [dm3] 3L_18730159_SNP [dm6]	T	A	1.228e^-4	1	INTERGENIC
X	4132449	X_4132449_SNP [dm3] X_4238416_SNP [dm6]	C	T	1.231e^-4	1	INTERGENIC
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	1.231e^-4	1	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19050966	X_19050966_SNP [dm3] X_19156933_SNP [dm6]	C	T	1.237e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	18536460	3L_18536460_SNP [dm3] 3L_18543360_SNP [dm6]	G	C	1.241e^-4	1	INTERGENIC
X	8689086	X_8689086_INS [dm3] X_8795053_INS [dm6]	C	TG	1.266e^-4	1	INTRON Lim1
2L	3235704	2L_3235704_SNP [dm3] 2L_3235704_SNP [dm6]	G	A	1.269e^-4	1	INTERGENIC
2L	6737468	2L_6737468_SNP [dm3] 2L_6737468_SNP [dm6]	C	A	1.270e^-4	1	NON_SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11810094	2R_11810094_SNP [dm3] 2R_15922589_SNP [dm6]	T	C	1.282e^-4	1	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16556921	3L_16556921_INS [dm3] 3L_16563821_INS [dm6]	A	AA	1.288e^-4	1	UTR_3_PRIME Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	19050971	X_19050971_SNP [dm3] X_19156938_SNP [dm6]	G	A	1.293e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2L	847170	2L_847170_SNP [dm3] 2L_847170_SNP [dm6]	A	T	1.297e^-4	1	INTRON drongo
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	1.298e^-4	1	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10940107	3R_10940107_SNP [dm3] 3R_15114385_SNP [dm6]	T	G	1.300e^-4	1	INTRON CG42788
2L	19980440	2L_19980440_INS [dm3] 2L_19980440_INS [dm6]	C	CATA	1.320e^-4	1	DOWNSTREAM CR43620 INTRON CG43861
3R	23798521	3R_23798521_SNP [dm3] 3R_27972799_SNP [dm6]	T	C	1.330e^-4	1	INTRON betaTub97EF
3R	24788091	3R_24788091_SNP [dm3] 3R_28962369_SNP [dm6]	G	A	1.341e^-4	1	INTRON CG14521
3R	24903900	3R_24903900_SNP [dm3] 3R_29078178_SNP [dm6]	G	T	1.347e^-4	1	INTRON CG11873
3L	18536345	3L_18536345_SNP [dm3] 3L_18543245_SNP [dm6]	G	A	1.367e^-4	1	INTERGENIC
3L	8095952	3L_8095952_SNP [dm3] 3L_8102852_SNP [dm6]	T	C	1.399e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_cad
3R	20812928	3R_20812928_SNP [dm3] 3R_24987206_SNP [dm6]	G	A	1.405e^-4	1	INTRON tnc
2L	7627477	2L_7627477_SNP [dm3] 2L_7627477_SNP [dm6]	A	G	1.424e^-4	1	INTERGENIC
2R	17891772	2R_17891772_SNP [dm3] 2R_22004267_SNP [dm6]	A	G	1.444e^-4	1	INTRON CG34370
3L	10962867	3L_10962867_SNP [dm3] 3L_10969767_SNP [dm6]	C	T	1.451e^-4	1	INTERGENIC
2L	9780068	2L_9780068_SNP [dm3] 2L_9780068_SNP [dm6]	C	T	1.467e^-4	1	INTERGENIC
2L	2858778	2L_2858778_SNP [dm3] 2L_2858778_SNP [dm6]	A	G	1.472e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12637630	2R_12637630_SNP [dm3] 2R_16750125_SNP [dm6]	A	G	1.477e^-4	1	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
3L	15835088	3L_15835088_SNP [dm3] 3L_15841988_SNP [dm6]	C	A	1.481e^-4	1	INTRON CG32150
X	19017780	X_19017780_SNP [dm3] X_19123747_SNP [dm6]	G	A	1.491e^-4	1	DOWNSTREAM CG15882 INTERGENIC
3R	26939256	3R_26939256_SNP [dm3] 3R_31113534_SNP [dm6]	A	T	1.516e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26930134	3R_26930134_SNP [dm3] 3R_31104412_SNP [dm6]	T	C	1.520e^-4	1	INTERGENIC
3L	18538851	3L_18538851_SNP [dm3] 3L_18545751_SNP [dm6]	G	A	1.523e^-4	1	INTERGENIC
3L	2792743	3L_2792743_SNP [dm3] 3L_2792743_SNP [dm6]	G	A	1.524e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6326297	2L_6326297_SNP [dm3] 2L_6326297_SNP [dm6]	T	A	1.530e^-4	1	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19976171	2L_19976171_SNP [dm3] 2L_19976171_SNP [dm6]	A	C	1.536e^-4	1	INTRON CG43861
3R	14971694	3R_14971694_SNP [dm3] 3R_19145972_SNP [dm6]	C	A	1.537e^-4	1	INTRON Ppcs
X	8062946	X_8062946_SNP [dm3] X_8168913_SNP [dm6]	T	G	1.538e^-4	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6492230	2R_6492230_SNP [dm3] 2R_10604725_SNP [dm6]	T	G	1.545e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	11811899	2R_11811899_SNP [dm3] 2R_15924394_SNP [dm6]	G	C	1.570e^-4	1	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24065914	3R_24065914_SNP [dm3] 3R_28240192_SNP [dm6]	C	A	1.572e^-4	1	UTR_3_PRIME CG34354 DOWNSTREAM CG34354
3R	9784165	3R_9784165_SNP [dm3] 3R_13958443_SNP [dm6]	C	T	1.577e^-4	1	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
2L	7327076	2L_7327076_SNP [dm3] 2L_7327076_SNP [dm6]	C	T	1.587e^-4	1	INTERGENIC
2L	17404420	2L_17404420_SNP [dm3] 2L_17404420_SNP [dm6]	T	G	1.591e^-4	1	UTR_3_PRIME CLIP-190 DOWNSTREAM CLIP-190 INTRON CLIP-190
2L	19934039	2L_19934039_SNP [dm3] 2L_19934039_SNP [dm6]	G	A	1.597e^-4	1	INTRON sick EXON CR45183
X	12453019	X_12453019_SNP [dm3] X_12558986_SNP [dm6]	C	G	1.601e^-4	1	INTRON CG43921
2L	12902661	2L_12902661_SNP [dm3] 2L_12902661_SNP [dm6]	C	T	1.609e^-4	1	INTERGENIC
3L	16463387	3L_16463387_SNP [dm3] 3L_16470287_SNP [dm6]	G	T	1.611e^-4	1	DOWNSTREAM aos INTRON CG33158
X	15019694	X_15019694_INS [dm3] X_15125661_INS [dm6]	A	AACCA	1.625e^-4	1	UPSTREAM drd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16683000	3L_16683000_SNP [dm3] 3L_16689900_SNP [dm6]	G	A	1.625e^-4	1	INTRON Lasp & 2 others EXON CR45179
2R	15682718	2R_15682718_SNP [dm3] 2R_19795213_SNP [dm6]	G	C	1.625e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8408266	3L_8408266_SNP [dm3] 3L_8415166_SNP [dm6]	A	C	1.629e^-4	1	SYNONYMOUS_CODING Exo70 DOWNSTREAM CG32354
2L	19976452	2L_19976452_SNP [dm3] 2L_19976452_SNP [dm6]	G	T	1.634e^-4	1	INTRON CG43861
3R	25638254	3R_25638254_SNP [dm3] 3R_29812532_SNP [dm6]	A	G	1.636e^-4	1	INTRON ca	TF binding site mE1_TFBS_chinmo
3R	14465692	3R_14465692_DEL [dm3] 3R_18639970_DEL [dm6]	TAT	T	1.637e^-4	1	INTRON qin & 1 other
X	10132886	X_10132886_SNP [dm3] X_10238853_SNP [dm6]	A	G	1.643e^-4	1	UTR_3_PRIME Hk	TF binding site mE1_TFBS_chinmo
X	18420142	X_18420142_INS [dm3] X_18526109_INS [dm6]	A	AC	1.646e^-4	1	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
X	8010294	X_8010294_SNP [dm3] X_8116261_SNP [dm6]	T	C	1.651e^-4	1	UPSTREAM CG1575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18538797	3L_18538797_SNP [dm3] 3L_18545697_SNP [dm6]	T	G	1.660e^-4	1	INTERGENIC
3L	3489260	3L_3489260_SNP [dm3] 3L_3489260_SNP [dm6]	C	A	1.676e^-4	1	INTRON CG42324
3L	18507494	3L_18507494_SNP [dm3] 3L_18514394_SNP [dm6]	G	T	1.679e^-4	1	INTERGENIC
3L	11111440	3L_11111440_SNP [dm3] 3L_11118340_SNP [dm6]	A	T	1.690e^-4	1	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	9381552	3L_9381552_SNP [dm3] 3L_9388452_SNP [dm6]	G	A	1.698e^-4	1	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14971698	3R_14971698_SNP [dm3] 3R_19145976_SNP [dm6]	T	A	1.698e^-4	1	INTRON Ppcs
X	21091206	X_21091206_SNP [dm3] X_21220179_SNP [dm6]	G	A	1.698e^-4	1	INTRON CG32521
3R	14971693	3R_14971693_SNP [dm3] 3R_19145971_SNP [dm6]	T	A	1.701e^-4	1	INTRON Ppcs
2R	11812895	2R_11812895_SNP [dm3] 2R_15925390_SNP [dm6]	A	G	1.723e^-4	1	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13350032	3L_13350032_SNP [dm3] 3L_13356932_SNP [dm6]	T	C	1.725e^-4	1	INTRON Nplp2
3R	14971681	3R_14971681_SNP [dm3] 3R_19145959_SNP [dm6]	A	G	1.734e^-4	1	INTRON Ppcs
3L	22960028	3L_22960028_SNP [dm3] 3L_22966928_SNP [dm6]	C	A	1.740e^-4	1	INTERGENIC
2R	8463654	2R_8463654_SNP [dm3] 2R_12576149_SNP [dm6]	G	A	1.748e^-4	1	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
2L	3241011	2L_3241011_SNP [dm3] 2L_3241011_SNP [dm6]	C	G	1.750e^-4	1	INTERGENIC
2R	17991446	2R_17991446_SNP [dm3] 2R_22103941_SNP [dm6]	G	T	1.760e^-4	1	SPLICE_SITE_REGION CG6613 SYNONYMOUS_CODING CG6613
3R	4002503	3R_4002503_SNP [dm3] 3R_8176781_SNP [dm6]	T	C	1.787e^-4	1	INTRON grn
2L	17368541	2L_17368541_SNP [dm3] 2L_17368541_SNP [dm6]	C	T	1.792e^-4	1	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11119911	3L_11119911_SNP [dm3] 3L_11126811_SNP [dm6]	A	G	1.796e^-4	1	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14305413	3R_14305413_SNP [dm3] 3R_18479691_SNP [dm6]	A	G	1.825e^-4	1	INTRON fru
2R	13459095	2R_13459095_SNP [dm3] 2R_17571590_SNP [dm6]	G	A	1.837e^-4	1	SYNONYMOUS_CODING POSH DOWNSTREAM CG14482
2L	8116596	2L_8116596_INS [dm3] 2L_8116596_INS [dm6]	A	AA	1.838e^-4	1	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6455046	2L_6455046_SNP [dm3] 2L_6455046_SNP [dm6]	C	T	1.852e^-4	1	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	22955526	3L_22955526_SNP [dm3] 3L_22962426_SNP [dm6]	G	T	1.854e^-4	1	DOWNSTREAM CR45758 INTERGENIC
X	7938296	X_7938296_SNP [dm3] X_8044263_SNP [dm6]	T	A	1.862e^-4	1	INTRON fs_1_h
2L	8660072	2L_8660072_SNP [dm3] 2L_8660072_SNP [dm6]	C	A	1.900e^-4	1	INTRON Sema-1a
3L	21162736	3L_21162736_SNP [dm3] 3L_21169636_SNP [dm6]	C	T	1.902e^-4	1	INTRON Ac78C
2R	11802562	2R_11802562_SNP [dm3] 2R_15915057_SNP [dm6]	C	T	1.918e^-4	1	UPSTREAM CR44373 INTRON sli
X	15422259	X_15422259_SNP [dm3] X_15528226_SNP [dm6]	G	C	1.923e^-4	1	INTRON Ac13E
2L	7340165	2L_7340165_SNP [dm3] 2L_7340165_SNP [dm6]	T	C	1.935e^-4	1	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16064784	X_16064784_SNP [dm3] X_16170751_SNP [dm6]	T	C	1.936e^-4	1	INTERGENIC
2R	11815190	2R_11815190_SNP [dm3] 2R_15927685_SNP [dm6]	A	G	1.942e^-4	1	UTR_5_PRIME bdg INTRON bdg	TF binding site mE1_TFBS_cad
2R	18569979	2R_18569979_SNP [dm3] 2R_22682474_SNP [dm6]	C	A	1.968e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5685653	2L_5685653_SNP [dm3] 2L_5685653_SNP [dm6]	G	T	1.968e^-4	1	INTERGENIC
3L	13941581	3L_13941581_SNP [dm3] 3L_13948481_SNP [dm6]	G	T	1.984e^-4	1	INTRON CG32137
2R	17878238	2R_17878238_SNP [dm3] 2R_21990733_SNP [dm6]	G	A	1.988e^-4	1	INTRON CG34370
3L	12434884	3L_12434884_SNP [dm3] 3L_12441784_SNP [dm6]	C	T	2.026e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	2.028e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2767649	2R_2767649_SNP [dm3] 2R_6880144_SNP [dm6]	C	T	2.032e^-4	1	NON_SYNONYMOUS_CODING Spn42Db UPSTREAM Spn42Dc DOWNSTREAM CR44169	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14904667	2R_14904667_SNP [dm3] 2R_19017162_SNP [dm6]	G	A	2.033e^-4	1	INTERGENIC
2R	6492340	2R_6492340_SNP [dm3] 2R_10604835_SNP [dm6]	C	T	2.036e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	4723967	2L_4723967_SNP [dm3] 2L_4723967_SNP [dm6]	T	C	2.037e^-4	1	INTERGENIC
3L	16675201	3L_16675201_SNP [dm3] 3L_16682101_SNP [dm6]	A	T	2.037e^-4	1	INTRON Lasp & 1 other
2R	15029918	2R_15029918_SNP [dm3] 2R_19142413_SNP [dm6]	T	A	2.039e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8692268	X_8692268_SNP [dm3] X_8798235_SNP [dm6]	A	T	2.056e^-4	1	INTRON Lim1
3L	12634944	3L_12634944_SNP [dm3] 3L_12641844_SNP [dm6]	A	T	2.063e^-4	1	INTRON CR32111	TF binding site BDTNP1_TFBS_twi
3L	18956853	3L_18956853_SNP [dm3] 3L_18963753_SNP [dm6]	G	T	2.078e^-4	1	INTERGENIC
3L	16682993	3L_16682993_SNP [dm3] 3L_16689893_SNP [dm6]	G	A	2.080e^-4	1	INTRON Lasp & 2 others EXON CR45179
3L	10962705	3L_10962705_SNP [dm3] 3L_10969605_SNP [dm6]	T	A	2.082e^-4	1	INTERGENIC
2L	6489547	2L_6489547_SNP [dm3] 2L_6489547_SNP [dm6]	C	T	2.085e^-4	1	SYNONYMOUS_CODING epsilonCOP UPSTREAM KFase DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12586874	3L_12586874_SNP [dm3] 3L_12593774_SNP [dm6]	A	G	2.087e^-4	1	INTRON ara
2L	739125	2L_739125_SNP [dm3] 2L_739125_SNP [dm6]	T	A	2.091e^-4	1	INTRON Eaat2
3R	15005788	3R_15005788_SNP [dm3] 3R_19180066_SNP [dm6]	G	A	2.094e^-4	1	SPLICE_SITE_REGION CG5555 UPSTREAM CG31475 INTRON CG5555	TF binding site BDTNP1_TFBS_dl
X	18580742	X_18580742_SNP [dm3] X_18686709_SNP [dm6]	G	A	2.098e^-4	1	INTRON phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	2.111e^-4	1	INTRON Mhc
3R	13839119	3R_13839119_SNP [dm3] 3R_18013397_SNP [dm6]	C	T	2.142e^-4	1	SYNONYMOUS_CODING cpo UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8095900	3L_8095900_SNP [dm3] 3L_8102800_SNP [dm6]	T	G	2.149e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_cad
3L	12482930	3L_12482930_SNP [dm3] 3L_12489830_SNP [dm6]	C	T	2.150e^-4	1	NON_SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9767916	2L_9767916_SNP [dm3] 2L_9767916_SNP [dm6]	C	T	2.168e^-4	1	NON_SYNONYMOUS_CODING CG4017 INTRON ppk18
3L	18507226	3L_18507226_SNP [dm3] 3L_18514126_SNP [dm6]	A	T	2.169e^-4	1	INTERGENIC
3L	14681486	3L_14681486_SNP [dm3] 3L_14688386_SNP [dm6]	T	C	2.172e^-4	1	INTRON ome
2L	9770876	2L_9770876_SNP [dm3] 2L_9770876_SNP [dm6]	A	C	2.175e^-4	1	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2R	7438737	2R_7438737_SNP [dm3] 2R_11551232_SNP [dm6]	T	C	2.175e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3367255	3L_3367255_SNP [dm3] 3L_3367255_SNP [dm6]	A	C	2.180e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
X	19050978	X_19050978_SNP [dm3] X_19156945_SNP [dm6]	A	C	2.186e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2R	17800912	2R_17800912_SNP [dm3] 2R_21913407_SNP [dm6]	A	C	2.211e^-4	1	INTRON Fili
3R	23407106	3R_23407106_SNP [dm3] 3R_27581384_SNP [dm6]	C	T	2.225e^-4	1	START_GAINED wdb UTR_5_PRIME wdb INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11815202	2R_11815202_SNP [dm3] 2R_15927697_SNP [dm6]	G	A	2.229e^-4	1	UTR_5_PRIME bdg INTRON bdg	TF binding site mE1_TFBS_cad
3R	10939972	3R_10939972_SNP [dm3] 3R_15114250_SNP [dm6]	G	A	2.238e^-4	1	INTRON CG42788
3L	9817572	3L_9817572_SNP [dm3] 3L_9824472_SNP [dm6]	A	G	2.243e^-4	1	UPSTREAM Ilp5 INTRON CG43897
3R	23264089	3R_23264089_SNP [dm3] 3R_27438367_SNP [dm6]	A	G	2.247e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10962862	3L_10962862_SNP [dm3] 3L_10969762_SNP [dm6]	A	G	2.247e^-4	1	INTERGENIC
3L	19197501	3L_19197501_SNP [dm3] 3L_19204401_SNP [dm6]	A	T	2.249e^-4	1	INTRON fz2
3L	579858	3L_579858_SNP [dm3] 3L_579858_SNP [dm6]	T	C	2.254e^-4	1	UTR_3_PRIME hipk	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12808089	3L_12808089_SNP [dm3] 3L_12814989_SNP [dm6]	C	G	2.270e^-4	1	UPSTREAM CG10754 INTRON CG42588	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	932855	2R_932855_SNP [dm3] 2R_5045350_SNP [dm6]	G	A	2.277e^-4	1	INTERGENIC	transposable element FlyBase
3L	11116832	3L_11116832_SNP [dm3] 3L_11123732_SNP [dm6]	A	G	2.279e^-4	1	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9172721	2R_9172721_SNP [dm3] 2R_13285216_SNP [dm6]	G	T	2.294e^-4	1	INTRON Dh31-R
3L	22953929	3L_22953929_SNP [dm3] 3L_22960829_SNP [dm6]	A	G	2.295e^-4	1	UPSTREAM CR45758 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7056417	X_7056417_SNP [dm3] X_7162384_SNP [dm6]	T	A	2.319e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16814383	2L_16814383_SNP [dm3] 2L_16814383_SNP [dm6]	A	C	2.324e^-4	1	SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
2L	19978311	2L_19978311_SNP [dm3] 2L_19978311_SNP [dm6]	C	G	2.325e^-4	1	UPSTREAM CR43620 INTRON CG43861
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	2.327e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2L	3233537	2L_3233537_SNP [dm3] 2L_3233537_SNP [dm6]	T	C	2.343e^-4	1	INTERGENIC
2L	11483985	2L_11483985_SNP [dm3] 2L_11483985_SNP [dm6]	G	T	2.355e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
2R	11815160	2R_11815160_SNP [dm3] 2R_15927655_SNP [dm6]	C	G	2.363e^-4	1	UTR_5_PRIME bdg INTRON bdg	TF binding site mE1_TFBS_cad
2L	14964377	2L_14964377_SNP [dm3] 2L_14964377_SNP [dm6]	A	G	2.368e^-4	1	INTRON CG42313
2L	18219643	2L_18219643_SNP [dm3] 2L_18219643_SNP [dm6]	G	A	2.387e^-4	1	INTRON CG42750
3L	19369928	3L_19369928_SNP [dm3] 3L_19376828_SNP [dm6]	C	A	2.390e^-4	1	INTRON CG32206
3L	7272883	3L_7272883_INS [dm3] 3L_7279783_INS [dm6]	A	AAACTAACTTATAATTTGAC...	2.395e^-4	1	INTRON unc-13-4A
3L	10005853	3L_10005853_SNP [dm3] 3L_10012753_SNP [dm6]	A	T	2.405e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24779273	3R_24779273_SNP [dm3] 3R_28953551_SNP [dm6]	C	T	2.411e^-4	1	INTRON CG14521
2R	17116548	2R_17116548_SNP [dm3] 2R_21229043_SNP [dm6]	A	T	2.420e^-4	1	INTRON ASPP
3L	12591748	3L_12591748_INS [dm3] 3L_12598648_INS [dm6]	A	AC	2.423e^-4	1	INTERGENIC
X	5352483	X_5352483_SNP [dm3] X_5458450_SNP [dm6]	C	G	2.425e^-4	1	INTRON SPR
X	6088998	X_6088998_SNP [dm3] X_6194965_SNP [dm6]	T	C	2.425e^-4	1	SYNONYMOUS_CODING CG32750
2L	539435	2L_539435_SNP [dm3] 2L_539435_SNP [dm6]	C	T	2.428e^-4	1	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5136175	3L_5136175_SNP [dm3] 3L_5143075_SNP [dm6]	T	G	2.443e^-4	1	SPLICE_SITE_REGION CG4623 SYNONYMOUS_CODING CG4623
2R	18038152	2R_18038152_SNP [dm3] 2R_22150647_SNP [dm6]	G	A	2.445e^-4	1	INTRON a
2R	10541970	2R_10541970_SNP [dm3] 2R_14654465_SNP [dm6]	A	G	2.446e^-4	1	INTERGENIC
3R	27166485	3R_27166485_SNP [dm3] 3R_31340763_SNP [dm6]	A	C	2.447e^-4	1	INTRON CG34347
X	15130164	X_15130164_SNP [dm3] X_15236131_SNP [dm6]	C	A	2.450e^-4	1	INTERGENIC
3L	11095932	3L_11095932_SNP [dm3] 3L_11102832_SNP [dm6]	G	A	2.459e^-4	1	DOWNSTREAM CG32071 INTRON Elo68alpha	TF binding site mE1_TFBS_chinmo
3L	2473895	3L_2473895_INS [dm3] 3L_2473895_INS [dm6]	T	TTT	2.460e^-4	1	DOWNSTREAM CG16762 INTRON CG45186
3L	2217048	3L_2217048_SNP [dm3] 3L_2217048_SNP [dm6]	T	C	2.465e^-4	1	INTERGENIC
3L	3367252	3L_3367252_SNP [dm3] 3L_3367252_SNP [dm6]	C	T	2.488e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
2R	13114838	2R_13114838_SNP [dm3] 2R_17227333_SNP [dm6]	C	T	2.514e^-4	1	INTRON mbl
2L	8296190	2L_8296190_SNP [dm3] 2L_8296190_SNP [dm6]	C	A	2.516e^-4	1	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2L	16947602	2L_16947602_SNP [dm3] 2L_16947602_SNP [dm6]	T	A	2.531e^-4	1	DOWNSTREAM CR44393 INTERGENIC
2L	7044706	2L_7044706_SNP [dm3] 2L_7044706_SNP [dm6]	G	A	2.548e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17864956	2L_17864956_SNP [dm3] 2L_17864956_SNP [dm6]	C	T	2.551e^-4	1	INTRON CadN2
X	16767044	X_16767044_SNP [dm3] X_16873011_SNP [dm6]	T	C	2.558e^-4	1	INTRON CG13003
2L	539458	2L_539458_SNP [dm3] 2L_539458_SNP [dm6]	G	A	2.565e^-4	1	SPLICE_SITE_REGION ush INTRON ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14553378	3R_14553378_SNP [dm3] 3R_18727656_SNP [dm6]	G	A	2.567e^-4	1	UTR_3_PRIME CG7715 INTRON Cha	TF binding site mE1_TFBS_chinmo
3L	14145992	3L_14145992_DEL [dm3] 3L_14152892_DEL [dm6]	ATGTTTTATACAA...	A	2.574e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1338888	3L_1338888_SNP [dm3] 3L_1338888_SNP [dm6]	C	T	2.583e^-4	1	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
3R	16999870	3R_16999870_SNP [dm3] 3R_21174148_SNP [dm6]	C	T	2.588e^-4	1	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10960945	3L_10960945_SNP [dm3] 3L_10967845_SNP [dm6]	C	A	2.591e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	16827955	2L_16827955_SNP [dm3] 2L_16827955_SNP [dm6]	G	T	2.597e^-4	1	DOWNSTREAM mdy INTRON CG31739	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5050393	X_5050393_SNP [dm3] X_5156360_SNP [dm6]	T	G	2.604e^-4	1	INTRON rg & 1 other
2R	12217576	2R_12217576_SNP [dm3] 2R_16330071_SNP [dm6]	A	G	2.617e^-4	1	NON_SYNONYMOUS_CODING Vha44 INTRON Vha44	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18420146	X_18420146_DEL [dm3] X_18526113_DEL [dm6]	TTA	T	2.628e^-4	1	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
2L	12816600	2L_12816600_SNP [dm3] 2L_12816600_SNP [dm6]	G	T	2.632e^-4	1	DOWNSTREAM kek1 INTERGENIC
2L	13716072	2L_13716072_SNP [dm3] 2L_13716072_SNP [dm6]	A	G	2.655e^-4	1	INTRON CG31814
X	16876533	X_16876533_SNP [dm3] X_16982500_SNP [dm6]	C	T	2.660e^-4	1	INTRON CG45002
3L	14145980	3L_14145980_SNP [dm3] 3L_14152880_SNP [dm6]	C	T	2.664e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5582728	3L_5582728_SNP [dm3] 3L_5589628_SNP [dm6]	T	A	2.664e^-4	1	SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
X	10782569	X_10782569_SNP [dm3] X_10888536_SNP [dm6]	C	G	2.671e^-4	1	INTRON Ork1
2L	8472967	2L_8472967_SNP [dm3] 2L_8472967_SNP [dm6]	G	C	2.672e^-4	1	INTRON d
3R	11557213	3R_11557213_SNP [dm3] 3R_15731491_SNP [dm6]	A	G	2.686e^-4	1	UPSTREAM CG34274 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15416755	2L_15416755_SNP [dm3] 2L_15416755_SNP [dm6]	A	T	2.689e^-4	1	INTERGENIC
3R	14465690	3R_14465690_SNP [dm3] 3R_18639968_SNP [dm6]	T	G	2.689e^-4	1	INTRON qin & 1 other
2L	16301473	2L_16301473_SNP [dm3] 2L_16301473_SNP [dm6]	A	C	2.692e^-4	1	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
2R	7099514	2R_7099514_SNP [dm3] 2R_11212009_SNP [dm6]	G	A	2.705e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10121802	2L_10121802_SNP [dm3] 2L_10121802_SNP [dm6]	C	T	2.707e^-4	1	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
3L	9811256	3L_9811256_SNP [dm3] 3L_9818156_SNP [dm6]	C	T	2.713e^-4	1	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
2R	18236862	2R_18236862_SNP [dm3] 2R_22349357_SNP [dm6]	G	T	2.717e^-4	1	DOWNSTREAM CG11298 INTRON Liprin-gamma
3L	5404195	3L_5404195_SNP [dm3] 3L_5411095_SNP [dm6]	C	T	2.725e^-4	1	INTERGENIC
3R	14535946	3R_14535946_SNP [dm3] 3R_18710224_SNP [dm6]	T	C	2.728e^-4	1	INTRON VAChT & 1 other
2R	11811860	2R_11811860_SNP [dm3] 2R_15924355_SNP [dm6]	A	G	2.730e^-4	1	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18722823	3L_18722823_SNP [dm3] 3L_18729723_SNP [dm6]	A	C	2.731e^-4	1	INTERGENIC
3L	9811217	3L_9811217_SNP [dm3] 3L_9818117_SNP [dm6]	T	G	2.740e^-4	1	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
3L	11121198	3L_11121198_SNP [dm3] 3L_11128098_SNP [dm6]	T	A	2.741e^-4	1	INTRON CG42575
2L	793842	2L_793842_SNP [dm3] 2L_793842_SNP [dm6]	C	T	2.747e^-4	1	INTERGENIC
X	16992628	X_16992628_SNP [dm3] X_17098595_SNP [dm6]	G	A	2.748e^-4	1	DOWNSTREAM CG16700 INTRON CG4991
2L	612933	2L_612933_INS [dm3] 2L_612933_INS [dm6]	G	GACCCC	2.751e^-4	1	INTERGENIC
2L	612934	2L_612934_DEL [dm3] 2L_612934_DEL [dm6]	TCATGGCAGTCA...	T	2.751e^-4	1	INTERGENIC
3L	21075361	3L_21075361_DEL [dm3] 3L_21082261_DEL [dm6]	GAAGATTTTTCTTGCTTTCC...	G	2.763e^-4	1	INTRON ko
3L	16910680	3L_16910680_SNP [dm3] 3L_16917580_SNP [dm6]	C	A	2.777e^-4	1	INTRON Lmpt
2L	13034689	2L_13034689_SNP [dm3] 2L_13034689_SNP [dm6]	A	G	2.783e^-4	1	INTRON CG9932
3L	19170792	3L_19170792_SNP [dm3] 3L_19177692_SNP [dm6]	C	T	2.784e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7896803	2R_7896803_SNP [dm3] 2R_12009298_SNP [dm6]	T	G	2.787e^-4	1	INTRON otk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	14298052	2R_14298052_SNP [dm3] 2R_18410547_SNP [dm6]	T	A	2.795e^-4	1	DOWNSTREAM GstE9 INTRON imd
3R	24482331	3R_24482331_SNP [dm3] 3R_28656609_SNP [dm6]	T	A	2.797e^-4	1	INTERGENIC
2R	17875979	2R_17875979_SNP [dm3] 2R_21988474_SNP [dm6]	A	G	2.809e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2R	17876535	2R_17876535_SNP [dm3] 2R_21989030_SNP [dm6]	G	A	2.809e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17876577	2R_17876577_SNP [dm3] 2R_21989072_SNP [dm6]	A	T	2.809e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17876592	2R_17876592_SNP [dm3] 2R_21989087_SNP [dm6]	A	G	2.809e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17876760	2R_17876760_SNP [dm3] 2R_21989255_SNP [dm6]	T	C	2.809e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	11121210	3L_11121210_SNP [dm3] 3L_11128110_SNP [dm6]	A	G	2.824e^-4	1	INTRON CG42575
X	4736835	X_4736835_SNP [dm3] X_4842802_SNP [dm6]	G	A	2.836e^-4	1	INTRON CG42594	TF binding site mE1_TFBS_inv
3R	2573914	3R_2573914_DEL [dm3] 3R_6748192_DEL [dm6]	AA	A	2.841e^-4	1	UPSTREAM CG34297 INTERGENIC
X	10272513	X_10272513_SNP [dm3] X_10378480_SNP [dm6]	T	C	2.844e^-4	1	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	16813159	2L_16813159_SNP [dm3] 2L_16813159_SNP [dm6]	G	A	2.851e^-4	1	INTRON CG13280 & 1 other
3R	14465658	3R_14465658_SNP [dm3] 3R_18639936_SNP [dm6]	G	T	2.860e^-4	1	INTRON qin & 1 other
3L	22955366	3L_22955366_SNP [dm3] 3L_22962266_SNP [dm6]	G	C	2.862e^-4	1	DOWNSTREAM CR45758 INTERGENIC
3L	11116166	3L_11116166_SNP [dm3] 3L_11123066_SNP [dm6]	C	T	2.878e^-4	1	UTR_5_PRIME Ufd1-like UPSTREAM CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9179306	2R_9179306_SNP [dm3] 2R_13291801_SNP [dm6]	T	C	2.898e^-4	1	INTRON Dh31-R
3R	26688566	3R_26688566_SNP [dm3] 3R_30862844_SNP [dm6]	C	T	2.898e^-4	1	INTERGENIC
2R	19624959	2R_19624959_SNP [dm3] 2R_23737436_SNP [dm6]	C	T	2.904e^-4	1	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16947596	2L_16947596_SNP [dm3] 2L_16947596_SNP [dm6]	T	A	2.915e^-4	1	DOWNSTREAM CR44393 INTERGENIC
2L	14081529	2L_14081529_SNP [dm3] 2L_14081529_SNP [dm6]	T	C	2.924e^-4	1	INTRON nAChRalpha5
2L	14081537	2L_14081537_SNP [dm3] 2L_14081537_SNP [dm6]	A	C	2.924e^-4	1	INTRON nAChRalpha5
3L	12066166	3L_12066166_SNP [dm3] 3L_12073066_SNP [dm6]	A	G	2.948e^-4	1	INTRON Sema-5c
2R	16947638	2R_16947638_SNP [dm3] 2R_21060133_SNP [dm6]	A	T	2.949e^-4	1	UPSTREAM mRpL54 DOWNSTREAM cpa INTRON CG15653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7718028	2L_7718028_SNP [dm3] 2L_7718028_SNP [dm6]	G	A	2.956e^-4	1	INTRON CG13793
3L	11747400	3L_11747400_DEL [dm3] 3L_11754300_DEL [dm6]	TAT	T	2.964e^-4	1	INTRON CG6024
3L	9811245	3L_9811245_SNP [dm3] 3L_9818145_SNP [dm6]	G	A	2.966e^-4	1	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
3L	9811246	3L_9811246_SNP [dm3] 3L_9818146_SNP [dm6]	T	A	2.966e^-4	1	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
3L	9811248	3L_9811248_SNP [dm3] 3L_9818148_SNP [dm6]	C	T	2.966e^-4	1	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
2L	795532	2L_795532_SNP [dm3] 2L_795532_SNP [dm6]	T	C	2.975e^-4	1	INTERGENIC
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	2.981e^-4	1	INTRON CG14521
X	20682318	X_20682318_SNP [dm3] X_20811291_SNP [dm6]	A	C	2.988e^-4	1	INTRON shakB
3R	11687896	3R_11687896_SNP [dm3] 3R_15862174_SNP [dm6]	G	T	2.990e^-4	1	SYNONYMOUS_CODING CG31183 DOWNSTREAM CG9632	TF binding site mE1_TFBS_cad
3R	19727344	3R_19727344_SNP [dm3] 3R_23901622_SNP [dm6]	G	A	2.990e^-4	1	INTRON sba
2L	14948207	2L_14948207_SNP [dm3] 2L_14948207_SNP [dm6]	T	A	2.993e^-4	1	INTRON CG42313
3L	10005528	3L_10005528_DEL [dm3] 3L_10012428_DEL [dm6]	TC	T	2.996e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16947611	2L_16947611_SNP [dm3] 2L_16947611_SNP [dm6]	A	T	3.003e^-4	1	EXON CR44393
2R	19247161	2R_19247161_SNP [dm3] 2R_23359638_SNP [dm6]	T	C	3.017e^-4	1	UPSTREAM CR44168 DOWNSTREAM vir & 1 other INTRON CG34424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18563233	3L_18563233_SNP [dm3] 3L_18570133_SNP [dm6]	A	C	3.021e^-4	1	INTRON AstC-R1
2L	3240659	2L_3240659_SNP [dm3] 2L_3240659_SNP [dm6]	G	A	3.027e^-4	1	INTERGENIC
2R	13814219	2R_13814219_SNP [dm3] 2R_17926714_SNP [dm6]	C	T	3.032e^-4	1	DOWNSTREAM Elk INTERGENIC
3L	15211000	3L_15211000_SNP [dm3] 3L_15217900_SNP [dm6]	T	C	3.033e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19963585	2L_19963585_SNP [dm3] 2L_19963585_SNP [dm6]	G	A	3.054e^-4	1	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG10680 DOWNSTREAM CR45701
3R	25048480	3R_25048480_SNP [dm3] 3R_29222758_SNP [dm6]	A	G	3.059e^-4	1	SYNONYMOUS_CODING CG1458 UPSTREAM Brd8 DOWNSTREAM Ef1gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	16947595	2L_16947595_SNP [dm3] 2L_16947595_SNP [dm6]	G	A	3.063e^-4	1	DOWNSTREAM CR44393 INTERGENIC
2L	16947603	2L_16947603_SNP [dm3] 2L_16947603_SNP [dm6]	T	A	3.063e^-4	1	DOWNSTREAM CR44393 INTERGENIC
2R	11805341	2R_11805341_SNP [dm3] 2R_15917836_SNP [dm6]	T	G	3.065e^-4	1	INTRON sli	TF binding site mE1_TFBS_cad
X	3307737	X_3307737_SNP [dm3] X_3413704_SNP [dm6]	A	C	3.076e^-4	1	INTRON CR44999 & 1 other
2R	19558937	2R_19558937_SNP [dm3] 2R_23671414_SNP [dm6]	T	C	3.080e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_HSA
2L	4737803	2L_4737803_SNP [dm3] 2L_4737803_SNP [dm6]	T	G	3.082e^-4	1	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	4416203	2R_4416203_SNP [dm3] 2R_8528698_SNP [dm6]	A	T	3.083e^-4	1	INTRON mtt
3L	15904768	3L_15904768_SNP [dm3] 3L_15911668_SNP [dm6]	A	G	3.090e^-4	1	INTRON sff
3L	11594146	3L_11594146_DEL [dm3] 3L_11601046_DEL [dm6]	AT	A	3.097e^-4	1	UPSTREAM CG7368 INTRON CG7368
2R	19558948	2R_19558948_SNP [dm3] 2R_23671425_SNP [dm6]	T	G	3.098e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_HSA
3L	18504259	3L_18504259_SNP [dm3] 3L_18511159_SNP [dm6]	A	T	3.102e^-4	1	INTERGENIC
X	14891769	X_14891769_SNP [dm3] X_14997736_SNP [dm6]	T	G	3.105e^-4	1	INTRON eag
X	14891770	X_14891770_SNP [dm3] X_14997737_SNP [dm6]	T	C	3.105e^-4	1	INTRON eag
X	14775879	X_14775879_SNP [dm3] X_14881846_SNP [dm6]	C	T	3.107e^-4	1	INTRON Flo2 & 2 others	TF binding site mE1_TFBS_HSA
3R	13593645	3R_13593645_SNP [dm3] 3R_17767923_SNP [dm6]	C	T	3.108e^-4	1	DOWNSTREAM CG43102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10382154	3R_10382154_SNP [dm3] 3R_14556432_SNP [dm6]	A	G	3.110e^-4	1	UPSTREAM Pde6 INTRON Pde6
2L	3233431	2L_3233431_SNP [dm3] 2L_3233431_SNP [dm6]	A	G	3.111e^-4	1	INTERGENIC
X	17356040	X_17356040_SNP [dm3] X_17462007_SNP [dm6]	C	G	3.114e^-4	1	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
2R	15343174	2R_15343174_SNP [dm3] 2R_19455669_SNP [dm6]	G	A	3.115e^-4	1	UPSTREAM par-1 & 1 other DOWNSTREAM CG7744 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7628118	2L_7628118_SNP [dm3] 2L_7628118_SNP [dm6]	C	A	3.127e^-4	1	INTERGENIC
2R	11811905	2R_11811905_SNP [dm3] 2R_15924400_SNP [dm6]	T	A	3.131e^-4	1	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8062932	X_8062932_SNP [dm3] X_8168899_SNP [dm6]	C	T	3.135e^-4	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12835504	3L_12835504_SNP [dm3] 3L_12842404_SNP [dm6]	A	C	3.153e^-4	1	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	18476380	X_18476380_DEL [dm3] X_18582347_DEL [dm6]	AA	A	3.153e^-4	1	INTERGENIC
2L	834152	2L_834152_SNP [dm3] 2L_834152_SNP [dm6]	C	A	3.153e^-4	1	UTR_3_PRIME drongo DOWNSTREAM dock & 1 other
2L	834234	2L_834234_SNP [dm3] 2L_834234_SNP [dm6]	T	C	3.153e^-4	1	UTR_3_PRIME drongo DOWNSTREAM dock & 1 other
2L	7016490	2L_7016490_SNP [dm3] 2L_7016490_SNP [dm6]	T	C	3.154e^-4	1	NON_SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2L	16301503	2L_16301503_SNP [dm3] 2L_16301503_SNP [dm6]	T	G	3.156e^-4	1	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
2R	2036450	2R_2036450_SNP [dm3] 2R_6148945_SNP [dm6]	T	C	3.162e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11121222	3L_11121222_SNP [dm3] 3L_11128122_SNP [dm6]	T	A	3.166e^-4	1	INTRON CG42575
3L	2942297	3L_2942297_INS [dm3] 3L_2942297_INS [dm6]	C	CT	3.167e^-4	1	INTRON Shab
3L	15182639	3L_15182639_SNP [dm3] 3L_15189539_SNP [dm6]	T	C	3.169e^-4	1	UPSTREAM CR44562 INTERGENIC
2L	17368660	2L_17368660_SNP [dm3] 2L_17368660_SNP [dm6]	C	G	3.186e^-4	1	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15737732	X_15737732_SNP [dm3] X_15843699_SNP [dm6]	G	C	3.188e^-4	1	NON_SYNONYMOUS_CODING Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14502786	2L_14502786_SNP [dm3] 2L_14502786_SNP [dm6]	A	G	3.189e^-4	1	INTERGENIC
2R	15025308	2R_15025308_SNP [dm3] 2R_19137803_SNP [dm6]	A	T	3.191e^-4	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11095100	3L_11095100_INS [dm3] 3L_11102000_INS [dm6]	T	TC	3.198e^-4	1	FRAME_SHIFT Elo68alpha UPSTREAM Elo68beta
3R	23264036	3R_23264036_SNP [dm3] 3R_27438314_SNP [dm6]	A	T	3.204e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11806334	2R_11806334_SNP [dm3] 2R_15918829_SNP [dm6]	T	C	3.212e^-4	1	INTRON sli	TF binding site mE1_TFBS_HSA
3R	14819965	3R_14819965_SNP [dm3] 3R_18994243_SNP [dm6]	A	C	3.217e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15763320	3R_15763320_SNP [dm3] 3R_19937598_SNP [dm6]	A	G	3.219e^-4	1	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
2L	16818273	2L_16818273_SNP [dm3] 2L_16818273_SNP [dm6]	C	A	3.221e^-4	1	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	3414241	2L_3414241_DEL [dm3] 2L_3414241_DEL [dm6]	GGAT	G	3.229e^-4	1	INTRON pgant2
2L	809705	2L_809705_SNP [dm3] 2L_809705_SNP [dm6]	C	T	3.230e^-4	1	UPSTREAM Nnf1b INTERGENIC
2R	9172694	2R_9172694_SNP [dm3] 2R_13285189_SNP [dm6]	A	C	3.230e^-4	1	INTRON Dh31-R
2L	8472927	2L_8472927_SNP [dm3] 2L_8472927_SNP [dm6]	G	A	3.236e^-4	1	INTRON d
3R	17853292	3R_17853292_SNP [dm3] 3R_22027570_SNP [dm6]	T	A	3.237e^-4	1	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10782812	X_10782812_SNP [dm3] X_10888779_SNP [dm6]	C	T	3.241e^-4	1	INTRON Ork1
3L	15504035	3L_15504035_SNP [dm3] 3L_15510935_SNP [dm6]	G	A	3.250e^-4	1	UTR_3_PRIME gdl UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10560975	3L_10560975_SNP [dm3] 3L_10567875_SNP [dm6]	T	A	3.253e^-4	1	INTRON A2bp1
2L	12420091	2L_12420091_SNP [dm3] 2L_12420091_SNP [dm6]	C	T	3.262e^-4	1	INTRON vir-1
3L	18557768	3L_18557768_SNP [dm3] 3L_18564668_SNP [dm6]	G	T	3.263e^-4	1	INTRON AstC-R1
2R	3795816	2R_3795816_SNP [dm3] 2R_7908311_SNP [dm6]	T	C	3.268e^-4	1	INTRON CG30377
3R	12422515	3R_12422515_SNP [dm3] 3R_16596793_SNP [dm6]	T	G	3.272e^-4	1	DOWNSTREAM CG10345 INTRON CG14892	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8989751	3L_8989751_SNP [dm3] 3L_8996651_SNP [dm6]	T	A	3.280e^-4	1	UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl
3L	22362791	3L_22362791_SNP [dm3] 3L_22369691_SNP [dm6]	C	T	3.282e^-4	1	INTRON Ten-m
2R	18236164	2R_18236164_SNP [dm3] 2R_22348659_SNP [dm6]	C	A	3.290e^-4	1	SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
3L	18563302	3L_18563302_SNP [dm3] 3L_18570202_SNP [dm6]	G	A	3.305e^-4	1	INTRON AstC-R1
3L	11003316	3L_11003316_DEL [dm3] 3L_11010216_DEL [dm6]	TGTACCCATGAAGTTATTTT...	T	3.309e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14525258	2R_14525258_SNP [dm3] 2R_18637753_SNP [dm6]	A	T	3.312e^-4	1	INTRON CG30122	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7627957	2L_7627957_SNP [dm3] 2L_7627957_SNP [dm6]	T	G	3.323e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14681627	3L_14681627_SNP [dm3] 3L_14688527_SNP [dm6]	T	C	3.324e^-4	1	INTRON ome
2R	12186764	2R_12186764_SNP [dm3] 2R_16299259_SNP [dm6]	T	G	3.338e^-4	1	UPSTREAM CG43265 DOWNSTREAM CR45232 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17285822	3L_17285822_SNP [dm3] 3L_17292722_SNP [dm6]	C	A	3.340e^-4	1	INTERGENIC
2L	16947640	2L_16947640_SNP [dm3] 2L_16947640_SNP [dm6]	T	A	3.343e^-4	1	EXON CR44393
2L	16947676	2L_16947676_SNP [dm3] 2L_16947676_SNP [dm6]	C	T	3.343e^-4	1	EXON CR44393
3R	25049029	3R_25049029_SNP [dm3] 3R_29223307_SNP [dm6]	C	A	3.347e^-4	1	SYNONYMOUS_CODING CG1458 UPSTREAM Brd8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	5141391	3L_5141391_SNP [dm3] 3L_5148291_SNP [dm6]	C	T	3.349e^-4	1	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
X	6255726	X_6255726_INS [dm3] X_6361693_INS [dm6]	A	AACGCGATGTAAAATA...	3.359e^-4	1	DOWNSTREAM kdn EXON swaPsi
2L	8472971	2L_8472971_SNP [dm3] 2L_8472971_SNP [dm6]	A	T	3.364e^-4	1	INTRON d
2R	18230118	2R_18230118_SNP [dm3] 2R_22342613_SNP [dm6]	G	C	3.371e^-4	1	NON_SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
3L	10960256	3L_10960256_INS [dm3] 3L_10967156_INS [dm6]	T	TTTG	3.374e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
3L	2647278	3L_2647278_SNP [dm3] 3L_2647278_SNP [dm6]	T	G	3.376e^-4	1	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	9134466	3L_9134466_SNP [dm3] 3L_9141366_SNP [dm6]	T	C	3.380e^-4	1	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6455021	2L_6455021_DEL [dm3] 2L_6455021_DEL [dm6]	TTA	T	3.392e^-4	1	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	18235659	2R_18235659_SNP [dm3] 2R_22348154_SNP [dm6]	G	A	3.393e^-4	1	UPSTREAM CG11298 INTRON Liprin-gamma
3R	9971908	3R_9971908_SNP [dm3] 3R_14146186_SNP [dm6]	C	T	3.396e^-4	1	INTERGENIC
3R	3631046	3R_3631046_SNP [dm3] 3R_7805324_SNP [dm6]	A	T	3.397e^-4	1	UTR_3_PRIME CG2993 UPSTREAM CG18268 DOWNSTREAM CG2993
3L	18612211	3L_18612211_SNP [dm3] 3L_18619111_SNP [dm6]	C	T	3.409e^-4	1	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13369440	3L_13369440_SNP [dm3] 3L_13376340_SNP [dm6]	T	G	3.412e^-4	1	INTERGENIC
2R	16342096	2R_16342096_SNP [dm3] 2R_20454591_SNP [dm6]	G	T	3.420e^-4	1	INTRON CG12484
2L	518528	2L_518528_SNP [dm3] 2L_518528_SNP [dm6]	C	G	3.422e^-4	1	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3367257	3L_3367257_SNP [dm3] 3L_3367257_SNP [dm6]	C	T	3.423e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
3L	5493787	3L_5493787_SNP [dm3] 3L_5500687_SNP [dm6]	C	G	3.426e^-4	1	DOWNSTREAM CR44518 & 1 other INTERGENIC
2L	18433421	2L_18433421_SNP [dm3] 2L_18433421_SNP [dm6]	C	T	3.439e^-4	1	UPSTREAM CR44488 INTERGENIC
X	14756745	X_14756745_SNP [dm3] X_14862712_SNP [dm6]	T	G	3.446e^-4	1	DOWNSTREAM CG9518 INTRON Flo2
X	8946805	X_8946805_SNP [dm3] X_9052772_SNP [dm6]	T	C	3.448e^-4	1	NON_SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24779267	3R_24779267_SNP [dm3] 3R_28953545_SNP [dm6]	T	G	3.452e^-4	1	INTRON CG14521
2L	13293022	2L_13293022_SNP [dm3] 2L_13293022_SNP [dm6]	T	G	3.455e^-4	1	UTR_5_PRIME CG16824 INTRON CG31729
2R	15025591	2R_15025591_DEL [dm3] 2R_19138086_DEL [dm6]	GC	G	3.457e^-4	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	20640469	2L_20640469_SNP [dm3] 2L_20640469_SNP [dm6]	C	T	3.457e^-4	1	SYNONYMOUS_CODING CG31680 UPSTREAM Sfp38D DOWNSTREAM CR43158
2L	12918813	2L_12918813_SNP [dm3] 2L_12918813_SNP [dm6]	C	A	3.475e^-4	1	INTRON ACXB
2R	3691570	2R_3691570_SNP [dm3] 2R_7804065_SNP [dm6]	C	G	3.477e^-4	1	SYNONYMOUS_CODING Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8697250	2L_8697250_SNP [dm3] 2L_8697250_SNP [dm6]	A	T	3.488e^-4	1	INTRON Hnf4
X	953483	X_953483_SNP [dm3] X_1059450_SNP [dm6]	A	C	3.491e^-4	1	INTRON CR44779
3R	17996679	3R_17996679_SNP [dm3] 3R_22170957_SNP [dm6]	T	C	3.494e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5466415	3L_5466415_SNP [dm3] 3L_5473315_SNP [dm6]	C	T	3.504e^-4	1	INTERGENIC
X	15737709	X_15737709_SNP [dm3] X_15843676_SNP [dm6]	G	A	3.512e^-4	1	SYNONYMOUS_CODING Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20396889	2L_20396889_SNP [dm3] 2L_20396889_SNP [dm6]	G	C	3.517e^-4	1	INTRON CG10947
3L	14572277	3L_14572277_SNP [dm3] 3L_14579177_SNP [dm6]	T	G	3.521e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	8810505	X_8810505_SNP [dm3] X_8916472_SNP [dm6]	T	A	3.523e^-4	1	INTRON rdgA
X	13487080	X_13487080_SNP [dm3] X_13593047_SNP [dm6]	C	T	3.523e^-4	1	UTR_3_PRIME Tango13 DOWNSTREAM up
2L	19971687	2L_19971687_SNP [dm3] 2L_19971687_SNP [dm6]	C	A	3.533e^-4	1	NON_SYNONYMOUS_CODING CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12031969	3L_12031969_SNP [dm3] 3L_12038869_SNP [dm6]	A	G	3.536e^-4	1	INTRON rols	TF binding site mE1_TFBS_inv
3L	7283385	3L_7283385_SNP [dm3] 3L_7290285_SNP [dm6]	T	G	3.538e^-4	1	INTRON unc-13-4A
3L	5136134	3L_5136134_SNP [dm3] 3L_5143034_SNP [dm6]	A	G	3.539e^-4	1	INTRON CG4623
3L	2474762	3L_2474762_SNP [dm3] 3L_2474762_SNP [dm6]	A	G	3.550e^-4	1	UTR_3_PRIME CG16762 INTRON CG45186
2L	19972826	2L_19972826_SNP [dm3] 2L_19972826_SNP [dm6]	T	A	3.552e^-4	1	INTRON CG43861
2R	6492251	2R_6492251_SNP [dm3] 2R_10604746_SNP [dm6]	C	A	3.554e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	10683296	3R_10683296_SNP [dm3] 3R_14857574_SNP [dm6]	G	T	3.556e^-4	1	INTRON btsz
3L	11659581	3L_11659581_SNP [dm3] 3L_11666481_SNP [dm6]	T	A	3.562e^-4	1	INTRON CG32085
3L	11659586	3L_11659586_SNP [dm3] 3L_11666486_SNP [dm6]	T	A	3.562e^-4	1	INTRON CG32085
3R	24263325	3R_24263325_SNP [dm3] 3R_28437603_SNP [dm6]	T	A	3.579e^-4	1	INTRON beat-VI
X	8692265	X_8692265_SNP [dm3] X_8798232_SNP [dm6]	A	G	3.581e^-4	1	INTRON Lim1
2L	13865303	2L_13865303_SNP [dm3] 2L_13865303_SNP [dm6]	C	T	3.606e^-4	1	DOWNSTREAM CR44848 INTRON CenG1A
2R	17782778	2R_17782778_SNP [dm3] 2R_21895273_SNP [dm6]	T	A	3.607e^-4	1	INTRON Fili
2R	10808004	2R_10808004_SNP [dm3] 2R_14920499_SNP [dm6]	C	G	3.608e^-4	1	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	26859844	3R_26859844_SNP [dm3] 3R_31034122_SNP [dm6]	C	G	3.616e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1006677	2L_1006677_SNP [dm3] 2L_1006677_SNP [dm6]	G	T	3.616e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	13866990	X_13866990_SNP [dm3] X_13972957_SNP [dm6]	C	G	3.617e^-4	1	INTRON mamo
3L	2217042	3L_2217042_SNP [dm3] 3L_2217042_SNP [dm6]	T	A	3.621e^-4	1	INTERGENIC
X	9211036	X_9211036_SNP [dm3] X_9317003_SNP [dm6]	G	C	3.630e^-4	1	DOWNSTREAM c12.1 INTERGENIC
3R	9147957	3R_9147957_SNP [dm3] 3R_13322235_SNP [dm6]	A	G	3.635e^-4	1	INTERGENIC
X	13062721	X_13062721_SNP [dm3] X_13168688_SNP [dm6]	A	G	3.639e^-4	1	INTRON CG34411
2L	21729668	2L_21729668_SNP [dm3] 2L_21729668_SNP [dm6]	C	T	3.656e^-4	1	DOWNSTREAM CG31619 INTERGENIC	transposable element FlyBase
3R	20097391	3R_20097391_SNP [dm3] 3R_24271669_SNP [dm6]	T	A	3.656e^-4	1	UPSTREAM jar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7628211	2L_7628211_SNP [dm3] 2L_7628211_SNP [dm6]	T	C	3.667e^-4	1	INTERGENIC
2L	7401980	2L_7401980_SNP [dm3] 2L_7401980_SNP [dm6]	T	C	3.668e^-4	1	UPSTREAM CG5171 INTRON CG5171
2R	19902427	2R_19902427_SNP [dm3] 2R_24014904_SNP [dm6]	T	C	3.672e^-4	1	UPSTREAM Unc-89 DOWNSTREAM CG4324 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27464934	3R_27464934_DEL [dm3] 3R_31639212_DEL [dm6]	TT	T	3.675e^-4	1	INTRON kek6	TF binding site mE1_TFBS_inv
2R	4350277	2R_4350277_SNP [dm3] 2R_8462772_SNP [dm6]	T	C	3.675e^-4	1	UTR_5_PRIME Mal-A5	TF binding site mE1_TFBS_Trl
X	8902565	X_8902565_DEL [dm3] X_9008532_DEL [dm6]	AAA	GG	3.679e^-4	1	INTRON rdgA & 1 other
2L	2531489	2L_2531489_SNP [dm3] 2L_2531489_SNP [dm6]	A	T	3.681e^-4	1	INTERGENIC
3L	20434726	3L_20434726_SNP [dm3] 3L_20441626_SNP [dm6]	T	G	3.703e^-4	1	UPSTREAM CG5910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16824530	2L_16824530_SNP [dm3] 2L_16824530_SNP [dm6]	T	A	3.704e^-4	1	INTRON mdy & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14819573	3R_14819573_SNP [dm3] 3R_18993851_SNP [dm6]	A	G	3.712e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	15834911	2R_15834911_INS [dm3] 2R_19947406_INS [dm6]	C	CGTC	3.715e^-4	1	UPSTREAM CG42691
2L	11699641	2L_11699641_SNP [dm3] 2L_11699641_SNP [dm6]	T	C	3.716e^-4	1	INTERGENIC
3R	24788083	3R_24788083_SNP [dm3] 3R_28962361_SNP [dm6]	G	C	3.725e^-4	1	INTRON CG14521
3R	14688395	3R_14688395_SNP [dm3] 3R_18862673_SNP [dm6]	G	A	3.737e^-4	1	INTERGENIC
2R	17937721	2R_17937721_SNP [dm3] 2R_22050216_SNP [dm6]	G	C	3.737e^-4	1	INTERGENIC
3R	14797983	3R_14797983_DEL [dm3] 3R_18972261_DEL [dm6]	TTGATTAACCCTT...	T	3.741e^-4	1	SPLICE_SITE_REGION CG42613 & 1 other INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10193059	X_10193059_SNP [dm3] X_10299026_SNP [dm6]	T	C	3.743e^-4	1	INTRON alpha-Man-I
X	8062944	X_8062944_SNP [dm3] X_8168911_SNP [dm6]	A	T	3.770e^-4	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12325265	X_12325265_SNP [dm3] X_12431232_SNP [dm6]	C	A	3.790e^-4	1	UPSTREAM Pkcdelta INTERGENIC
3L	11928223	3L_11928223_SNP [dm3] 3L_11935123_SNP [dm6]	A	G	3.790e^-4	1	NON_SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo
3L	12010578	3L_12010578_SNP [dm3] 3L_12017478_SNP [dm6]	C	T	3.797e^-4	1	INTRON rols
2R	9245721	2R_9245721_SNP [dm3] 2R_13358216_SNP [dm6]	T	C	3.806e^-4	1	INTERGENIC
3L	18513420	3L_18513420_SNP [dm3] 3L_18520320_SNP [dm6]	T	A	3.808e^-4	1	INTERGENIC
3L	14146029	3L_14146029_SNP [dm3] 3L_14152929_SNP [dm6]	C	T	3.813e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7056442	X_7056442_SNP [dm3] X_7162409_SNP [dm6]	T	C	3.830e^-4	1	INTRON CG9650	insulator Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	7056477	X_7056477_SNP [dm3] X_7162444_SNP [dm6]	A	G	3.830e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	827521	2L_827521_SNP [dm3] 2L_827521_SNP [dm6]	C	G	3.840e^-4	1	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17069810	3R_17069810_SNP [dm3] 3R_21244088_SNP [dm6]	T	C	3.845e^-4	1	SYNONYMOUS_CODING CG5892
3L	2778628	3L_2778628_SNP [dm3] 3L_2778628_SNP [dm6]	C	T	3.859e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11809832	2R_11809832_SNP [dm3] 2R_15922327_SNP [dm6]	T	A	3.861e^-4	1	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11808480	2R_11808480_SNP [dm3] 2R_15920975_SNP [dm6]	T	A	3.870e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19169926	3R_19169926_SNP [dm3] 3R_23344204_SNP [dm6]	A	C	3.880e^-4	1	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16051023	3L_16051023_SNP [dm3] 3L_16057923_SNP [dm6]	C	A	3.898e^-4	1	INTRON Mbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11121023	3L_11121023_SNP [dm3] 3L_11127923_SNP [dm6]	A	G	3.898e^-4	1	INTRON CG42575
3R	14198923	3R_14198923_SNP [dm3] 3R_18373201_SNP [dm6]	A	T	3.913e^-4	1	NON_SYNONYMOUS_CODING CG14310 UPSTREAM gl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	15124512	3L_15124512_SNP [dm3] 3L_15131412_SNP [dm6]	G	C	3.914e^-4	1	UPSTREAM CG13457 DOWNSTREAM CG12316 INTERGENIC
3R	23264147	3R_23264147_INS [dm3] 3R_27438425_INS [dm6]	T	TAAAAAA	3.929e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20707498	2R_20707498_SNP [dm3] 2R_24819975_SNP [dm6]	C	T	3.943e^-4	1	SYNONYMOUS_CODING Dll	TF binding site mE1_TFBS_chinmo
3L	11095342	3L_11095342_SNP [dm3] 3L_11102242_SNP [dm6]	G	T	3.947e^-4	1	SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta
2L	6490267	2L_6490267_SNP [dm3] 2L_6490267_SNP [dm6]	A	C	3.948e^-4	1	UPSTREAM CG31638 DOWNSTREAM epsilonCOP INTRON CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11389278	3R_11389278_SNP [dm3] 3R_15563556_SNP [dm6]	C	T	3.954e^-4	1	INTERGENIC
3L	17454739	3L_17454739_SNP [dm3] 3L_17461639_SNP [dm6]	T	A	3.954e^-4	1	INTERGENIC
3L	8691593	3L_8691593_SNP [dm3] 3L_8698493_SNP [dm6]	T	C	3.959e^-4	1	INTERGENIC
3L	21162716	3L_21162716_SNP [dm3] 3L_21169616_SNP [dm6]	A	C	3.966e^-4	1	INTRON Ac78C
X	13867156	X_13867156_SNP [dm3] X_13973123_SNP [dm6]	C	A	3.995e^-4	1	INTRON mamo
X	16155708	X_16155708_SNP [dm3] X_16261675_SNP [dm6]	G	A	4.000e^-4	1	INTERGENIC
3L	11120562	3L_11120562_SNP [dm3] 3L_11127462_SNP [dm6]	A	C	4.006e^-4	1	INTRON CG42575
2R	17879012	2R_17879012_SNP [dm3] 2R_21991507_SNP [dm6]	T	G	4.010e^-4	1	INTRON CG34370
2R	6209004	2R_6209004_SNP [dm3] 2R_10321499_SNP [dm6]	T	A	4.013e^-4	1	SYNONYMOUS_CODING Ndg UPSTREAM CG34222 DOWNSTREAM CG42732
2L	16301560	2L_16301560_SNP [dm3] 2L_16301560_SNP [dm6]	A	G	4.018e^-4	1	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
2R	2973381	2R_2973381_SNP [dm3] 2R_7085876_SNP [dm6]	A	C	4.023e^-4	1	UPSTREAM esn INTERGENIC
2R	12216491	2R_12216491_DEL [dm3] 2R_16328986_DEL [dm6]	GTG	G	4.026e^-4	1	INTRON Vha44
X	20112365	X_20112365_SNP [dm3] X_20241291_SNP [dm6]	T	G	4.032e^-4	1	INTRON obst-A	TF binding site mE1_TFBS_sens
X	7442094	X_7442094_SNP [dm3] X_7548061_SNP [dm6]	G	A	4.042e^-4	1	UPSTREAM CG32719 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14904669	2R_14904669_SNP [dm3] 2R_19017164_SNP [dm6]	G	A	4.057e^-4	1	INTERGENIC
2L	12910906	2L_12910906_SNP [dm3] 2L_12910906_SNP [dm6]	A	G	4.079e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	793440	2L_793440_SNP [dm3] 2L_793440_SNP [dm6]	C	T	4.088e^-4	1	INTERGENIC
2R	19704491	2R_19704491_SNP [dm3] 2R_23816968_SNP [dm6]	C	T	4.091e^-4	1	INTRON CG4797
X	2992750	X_2992750_SNP [dm3] X_3098717_SNP [dm6]	G	T	4.094e^-4	1	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	7056462	X_7056462_SNP [dm3] X_7162429_SNP [dm6]	T	G	4.097e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	7056463	X_7056463_DEL [dm3] X_7162430_DEL [dm6]	TA	T	4.097e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4725013	2L_4725013_SNP [dm3] 2L_4725013_SNP [dm6]	A	G	4.097e^-4	1	INTERGENIC
X	15169721	X_15169721_INS [dm3] X_15275688_INS [dm6]	A	AA	4.101e^-4	1	INTERGENIC
2R	17876112	2R_17876112_SNP [dm3] 2R_21988607_SNP [dm6]	A	G	4.130e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	6057016	3L_6057016_SNP [dm3] 3L_6063916_SNP [dm6]	C	T	4.131e^-4	1	INTERGENIC
2L	17373884	2L_17373884_SNP [dm3] 2L_17373884_SNP [dm6]	T	C	4.157e^-4	1	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5678662	2R_5678662_DEL [dm3] 2R_9791157_DEL [dm6]	GTG	G	4.157e^-4	1	INTRON CG1688 EXON CR44208
3L	18557971	3L_18557971_SNP [dm3] 3L_18564871_SNP [dm6]	C	A	4.161e^-4	1	INTRON AstC-R1
3R	14971798	3R_14971798_SNP [dm3] 3R_19146076_SNP [dm6]	T	C	4.177e^-4	1	INTRON Ppcs
3L	4614069	3L_4614069_SNP [dm3] 3L_4614069_SNP [dm6]	T	A	4.179e^-4	1	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	6738525	2L_6738525_SNP [dm3] 2L_6738525_SNP [dm6]	G	A	4.189e^-4	1	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7208780	3L_7208780_SNP [dm3] 3L_7215680_SNP [dm6]	G	A	4.193e^-4	1	INTERGENIC
2R	3264216	2R_3264216_SNP [dm3] 2R_7376711_SNP [dm6]	C	T	4.197e^-4	1	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	11815446	2R_11815446_SNP [dm3] 2R_15927941_SNP [dm6]	T	G	4.201e^-4	1	UTR_5_PRIME bdg INTRON bdg
3L	7201550	3L_7201550_SNP [dm3] 3L_7208450_SNP [dm6]	C	G	4.203e^-4	1	INTERGENIC
3R	14798068	3R_14798068_SNP [dm3] 3R_18972346_SNP [dm6]	A	G	4.204e^-4	1	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14819685	3R_14819685_SNP [dm3] 3R_18993963_SNP [dm6]	T	C	4.211e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	18540534	3L_18540534_SNP [dm3] 3L_18547434_SNP [dm6]	A	G	4.234e^-4	1	INTERGENIC
3R	25048527	3R_25048527_SNP [dm3] 3R_29222805_SNP [dm6]	C	T	4.246e^-4	1	UPSTREAM Brd8 DOWNSTREAM Ef1gamma INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	9444893	X_9444893_SNP [dm3] X_9550860_SNP [dm6]	A	T	4.247e^-4	1	UPSTREAM CG32700 DOWNSTREAM l_1_G0320 INTERGENIC
X	7056446	X_7056446_SNP [dm3] X_7162413_SNP [dm6]	A	T	4.257e^-4	1	INTRON CG9650	insulator Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11852304	3L_11852304_SNP [dm3] 3L_11859204_SNP [dm6]	C	T	4.259e^-4	1	INTRON CG44837
2L	13865305	2L_13865305_SNP [dm3] 2L_13865305_SNP [dm6]	T	G	4.266e^-4	1	DOWNSTREAM CR44848 INTRON CenG1A
2R	18631973	2R_18631973_SNP [dm3] 2R_22744468_SNP [dm6]	G	T	4.269e^-4	1	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15025544	2R_15025544_SNP [dm3] 2R_19138039_SNP [dm6]	G	T	4.278e^-4	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5094078	X_5094078_DEL [dm3] X_5200045_DEL [dm6]	CCTTGTTAAAATC...	C	4.284e^-4	1	INTRON rg & 1 other
3R	14688291	3R_14688291_SNP [dm3] 3R_18862569_SNP [dm6]	G	A	4.289e^-4	1	INTERGENIC
3R	16999849	3R_16999849_SNP [dm3] 3R_21174127_SNP [dm6]	T	A	4.297e^-4	1	NON_SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	4.309e^-4	1	INTRON Mhc
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	4.309e^-4	1	INTRON Mhc
3R	3649028	3R_3649028_SNP [dm3] 3R_7823306_SNP [dm6]	T	C	4.324e^-4	1	INTRON CG34384
2L	13865297	2L_13865297_SNP [dm3] 2L_13865297_SNP [dm6]	T	A	4.328e^-4	1	DOWNSTREAM CR44848 INTRON CenG1A
3L	5496002	3L_5496002_SNP [dm3] 3L_5502902_SNP [dm6]	C	T	4.335e^-4	1	DOWNSTREAM CG34342 INTERGENIC
3L	18503465	3L_18503465_SNP [dm3] 3L_18510365_SNP [dm6]	C	A	4.336e^-4	1	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	10962795	3L_10962795_SNP [dm3] 3L_10969695_SNP [dm6]	A	G	4.353e^-4	1	INTERGENIC
3L	18504174	3L_18504174_SNP [dm3] 3L_18511074_SNP [dm6]	G	A	4.359e^-4	1	INTERGENIC
2L	6472409	2L_6472409_SNP [dm3] 2L_6472409_SNP [dm6]	T	A	4.362e^-4	1	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23414636	3R_23414636_SNP [dm3] 3R_27588914_SNP [dm6]	C	T	4.370e^-4	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2217005	3L_2217005_SNP [dm3] 3L_2217005_SNP [dm6]	C	A	4.403e^-4	1	INTERGENIC
2L	10824426	2L_10824426_SNP [dm3] 2L_10824426_SNP [dm6]	A	G	4.405e^-4	1	INTRON Nos
2R	7151418	2R_7151418_SNP [dm3] 2R_11263913_SNP [dm6]	T	G	4.408e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	14904435	2R_14904435_SNP [dm3] 2R_19016930_SNP [dm6]	T	A	4.411e^-4	1	INTERGENIC
3L	15357609	3L_15357609_SNP [dm3] 3L_15364509_SNP [dm6]	A	T	4.415e^-4	1	INTERGENIC
3L	9134376	3L_9134376_SNP [dm3] 3L_9141276_SNP [dm6]	C	T	4.415e^-4	1	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10258423	2L_10258423_SNP [dm3] 2L_10258423_SNP [dm6]	G	A	4.416e^-4	1	INTRON Pten
2L	3594654	2L_3594654_SNP [dm3] 2L_3594654_SNP [dm6]	C	T	4.420e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14756814	X_14756814_SNP [dm3] X_14862781_SNP [dm6]	C	A	4.429e^-4	1	DOWNSTREAM CG9518 INTRON Flo2
3R	14819561	3R_14819561_SNP [dm3] 3R_18993839_SNP [dm6]	C	G	4.435e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	25049861	3R_25049861_SNP [dm3] 3R_29224139_SNP [dm6]	A	G	4.443e^-4	1	SYNONYMOUS_CODING Brd8 UPSTREAM CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11119941	3L_11119941_SNP [dm3] 3L_11126841_SNP [dm6]	C	A	4.457e^-4	1	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10334225	2R_10334225_INS [dm3] 2R_14446720_INS [dm6]	T	TC	4.470e^-4	1	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19305413	X_19305413_INS [dm3] X_19411380_INS [dm6]	T	TGCAG	4.477e^-4	1	INTRON kek5
2L	795488	2L_795488_SNP [dm3] 2L_795488_SNP [dm6]	T	C	4.484e^-4	1	INTERGENIC
3R	17399686	3R_17399686_SNP [dm3] 3R_21573964_SNP [dm6]	G	A	4.500e^-4	1	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26859815	3R_26859815_SNP [dm3] 3R_31034093_SNP [dm6]	T	A	4.505e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17432791	2R_17432791_INS [dm3] 2R_21545286_INS [dm6]	T	TT	4.510e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24787770	3R_24787770_SNP [dm3] 3R_28962048_SNP [dm6]	T	A	4.511e^-4	1	INTRON CG14521
X	14961707	X_14961707_SNP [dm3] X_15067674_SNP [dm6]	T	A	4.513e^-4	1	INTRON dob
3L	15503365	3L_15503365_SNP [dm3] 3L_15510265_SNP [dm6]	T	A	4.518e^-4	1	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	4.533e^-4	1	DOWNSTREAM CG43760 INTERGENIC
2R	14512516	2R_14512516_DEL [dm3] 2R_18625011_DEL [dm6]	CAAAC	C	4.538e^-4	1	UTR_5_PRIME Atg7 UPSTREAM Sec6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	4133180	3L_4133180_SNP [dm3] 3L_4133180_SNP [dm6]	G	A	4.541e^-4	1	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24824770	3R_24824770_SNP [dm3] 3R_28999048_SNP [dm6]	G	A	4.547e^-4	1	INTRON wat
2L	6593176	2L_6593176_SNP [dm3] 2L_6593176_SNP [dm6]	A	G	4.554e^-4	1	INTRON CG11319
2R	15693582	2R_15693582_SNP [dm3] 2R_19806077_SNP [dm6]	A	T	4.558e^-4	1	INTERGENIC
2L	5153572	2L_5153572_SNP [dm3] 2L_5153572_SNP [dm6]	G	T	4.565e^-4	1	INTRON Msp300
2L	18209501	2L_18209501_SNP [dm3] 2L_18209501_SNP [dm6]	A	G	4.573e^-4	1	UPSTREAM CG31802 INTRON CG42750
3L	5980877	3L_5980877_SNP [dm3] 3L_5987777_SNP [dm6]	C	T	4.574e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9623751	3R_9623751_SNP [dm3] 3R_13798029_SNP [dm6]	C	G	4.574e^-4	1	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9539393	2L_9539393_SNP [dm3] 2L_9539393_SNP [dm6]	C	A	4.586e^-4	1	UTR_3_PRIME Oatp30B
3L	23011838	3L_23011838_SNP [dm3] 3L_23018738_SNP [dm6]	G	A	4.598e^-4	1	INTRON nrm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5678134	2L_5678134_SNP [dm3] 2L_5678134_SNP [dm6]	C	T	4.613e^-4	1	UPSTREAM CG12511 INTERGENIC
2R	18661697	2R_18661697_SNP [dm3] 2R_22774192_SNP [dm6]	G	A	4.615e^-4	1	INTRON CG42260
2L	5685713	2L_5685713_SNP [dm3] 2L_5685713_SNP [dm6]	G	C	4.660e^-4	1	INTERGENIC
2L	5603991	2L_5603991_SNP [dm3] 2L_5603991_SNP [dm6]	T	C	4.662e^-4	1	SYNONYMOUS_CODING CG14010
3L	14083855	3L_14083855_SNP [dm3] 3L_14090755_SNP [dm6]	A	C	4.666e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15904769	3L_15904769_SNP [dm3] 3L_15911669_SNP [dm6]	T	A	4.672e^-4	1	INTRON sff
3R	10939948	3R_10939948_SNP [dm3] 3R_15114226_SNP [dm6]	G	A	4.679e^-4	1	INTRON CG42788
3L	2405614	3L_2405614_SNP [dm3] 3L_2405614_SNP [dm6]	G	C	4.680e^-4	1	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	109123	2L_109123_SNP [dm3] 2L_109123_SNP [dm6]	G	A	4.684e^-4	1	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	109128	2L_109128_SNP [dm3] 2L_109128_SNP [dm6]	C	T	4.684e^-4	1	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13324326	2R_13324326_SNP [dm3] 2R_17436821_SNP [dm6]	C	T	4.686e^-4	1	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1494454	2L_1494454_SNP [dm3] 2L_1494454_SNP [dm6]	G	A	4.686e^-4	1	SYNONYMOUS_CODING CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12117409	2R_12117409_SNP [dm3] 2R_16229904_SNP [dm6]	G	T	4.698e^-4	1	UPSTREAM CG15701 DOWNSTREAM Tsf3 INTRON CG15706	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	23414291	3R_23414291_SNP [dm3] 3R_27588569_SNP [dm6]	A	G	4.699e^-4	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23095921	3L_23095921_SNP [dm3] 3L_23102821_SNP [dm6]	G	A	4.702e^-4	1	SYNONYMOUS_CODING CkIIalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14118510	2R_14118510_SNP [dm3] 2R_18231005_SNP [dm6]	A	T	4.705e^-4	1	EXON CR45311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16831432	2L_16831432_SNP [dm3] 2L_16831432_SNP [dm6]	C	A	4.709e^-4	1	UTR_3_PRIME CG31739 DOWNSTREAM CG13282	TF binding site mE1_TFBS_cad
3L	11121233	3L_11121233_SNP [dm3] 3L_11128133_SNP [dm6]	G	C	4.710e^-4	1	INTRON CG42575
3L	15835074	3L_15835074_SNP [dm3] 3L_15841974_SNP [dm6]	A	T	4.711e^-4	1	INTRON CG32150
2L	12691733	2L_12691733_SNP [dm3] 2L_12691733_SNP [dm6]	A	G	4.717e^-4	1	SYNONYMOUS_CODING CG5525	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20455160	3L_20455160_SNP [dm3] 3L_20462060_SNP [dm6]	A	T	4.718e^-4	1	UTR_3_PRIME mag INTRON CG5195	TF binding site mE1_TFBS_cad
2L	2817858	2L_2817858_SNP [dm3] 2L_2817858_SNP [dm6]	C	T	4.725e^-4	1	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22954355	3R_22954355_INS [dm3] 3R_27128633_INS [dm6]	A	AAA	4.725e^-4	1	SPLICE_SITE_REGION CG6051 INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12918847	2L_12918847_SNP [dm3] 2L_12918847_SNP [dm6]	A	T	4.765e^-4	1	INTRON ACXB
2L	13931288	2L_13931288_SNP [dm3] 2L_13931288_SNP [dm6]	T	A	4.765e^-4	1	NON_SYNONYMOUS_CODING CG42711 INTRON Ance-3
2L	15566554	2L_15566554_SNP [dm3] 2L_15566554_SNP [dm6]	A	T	4.770e^-4	1	INTRON kek3
2R	5678789	2R_5678789_SNP [dm3] 2R_9791284_SNP [dm6]	A	T	4.771e^-4	1	INTRON CG1688 EXON CR44208
X	7056634	X_7056634_SNP [dm3] X_7162601_SNP [dm6]	T	G	4.772e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	7056691	X_7056691_SNP [dm3] X_7162658_SNP [dm6]	A	G	4.772e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	24824527	3R_24824527_SNP [dm3] 3R_28998805_SNP [dm6]	T	C	4.774e^-4	1	INTRON wat
3R	9959171	3R_9959171_INS [dm3] 3R_14133449_INS [dm6]	A	AA	4.776e^-4	1	INTERGENIC
X	6543564	X_6543564_SNP [dm3] X_6649531_SNP [dm6]	A	G	4.789e^-4	1	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6448475	2L_6448475_SNP [dm3] 2L_6448475_SNP [dm6]	T	A	4.791e^-4	1	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16992758	X_16992758_SNP [dm3] X_17098725_SNP [dm6]	T	A	4.801e^-4	1	DOWNSTREAM CG16700 INTRON CG4991
3L	18548450	3L_18548450_SNP [dm3] 3L_18555350_SNP [dm6]	A	G	4.804e^-4	1	INTERGENIC
X	16155722	X_16155722_SNP [dm3] X_16261689_SNP [dm6]	C	A	4.814e^-4	1	INTERGENIC
2L	9829674	2L_9829674_SNP [dm3] 2L_9829674_SNP [dm6]	G	A	4.814e^-4	1	INTRON nAChRalpha6
3R	3505414	3R_3505414_SNP [dm3] 3R_7679692_SNP [dm6]	T	C	4.823e^-4	1	INTRON Nlg1
2R	18235346	2R_18235346_SNP [dm3] 2R_22347841_SNP [dm6]	G	T	4.836e^-4	1	UPSTREAM CG11298 INTRON Liprin-gamma
3R	20097366	3R_20097366_SNP [dm3] 3R_24271644_SNP [dm6]	A	C	4.850e^-4	1	UPSTREAM jar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8835411	3L_8835411_SNP [dm3] 3L_8842311_SNP [dm6]	T	A	4.851e^-4	1	INTRON dally
2R	17867752	2R_17867752_SNP [dm3] 2R_21980247_SNP [dm6]	C	G	4.853e^-4	1	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	19220801	3R_19220801_SNP [dm3] 3R_23395079_SNP [dm6]	A	G	4.857e^-4	1	INTERGENIC
2R	20637007	2R_20637007_SNP [dm3] 2R_24749484_SNP [dm6]	C	G	4.862e^-4	1	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8675162	X_8675162_SNP [dm3] X_8781129_SNP [dm6]	C	T	4.866e^-4	1	INTRON Lim1
2L	6635556	2L_6635556_SNP [dm3] 2L_6635556_SNP [dm6]	G	A	4.878e^-4	1	UTR_3_PRIME CG31635 INTRON CG31635	TF binding site mE1_TFBS_cad
3L	9676307	3L_9676307_SNP [dm3] 3L_9683207_SNP [dm6]	C	T	4.880e^-4	1	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7056628	X_7056628_SNP [dm3] X_7162595_SNP [dm6]	G	T	4.882e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25049638	3R_25049638_SNP [dm3] 3R_29223916_SNP [dm6]	A	T	4.885e^-4	1	NON_SYNONYMOUS_CODING Brd8 UPSTREAM CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	22954336	3R_22954336_SNP [dm3] 3R_27128614_SNP [dm6]	C	G	4.888e^-4	1	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2992748	X_2992748_SNP [dm3] X_3098715_SNP [dm6]	G	A	4.898e^-4	1	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	14210195	3R_14210195_SNP [dm3] 3R_18384473_SNP [dm6]	G	A	4.904e^-4	1	SYNONYMOUS_CODING CG14309
2R	16501983	2R_16501983_SNP [dm3] 2R_20614478_SNP [dm6]	T	A	4.913e^-4	1	INTRON Hil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8749872	X_8749872_SNP [dm3] X_8855839_SNP [dm6]	T	A	4.918e^-4	1	INTRON CG12075
2R	11154077	2R_11154077_SNP [dm3] 2R_15266572_SNP [dm6]	A	T	4.939e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
3L	12002396	3L_12002396_SNP [dm3] 3L_12009296_SNP [dm6]	G	C	4.940e^-4	1	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11747416	3L_11747416_SNP [dm3] 3L_11754316_SNP [dm6]	T	C	4.942e^-4	1	INTRON CG6024
3R	12596087	3R_12596087_SNP [dm3] 3R_16770365_SNP [dm6]	A	T	4.955e^-4	1	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11154050	2R_11154050_SNP [dm3] 2R_15266545_SNP [dm6]	T	A	4.958e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
2L	16781122	2L_16781122_DEL [dm3] 2L_16781122_DEL [dm6]	GC	T	4.960e^-4	1	INTRON Mhc
3L	15458621	3L_15458621_SNP [dm3] 3L_15465521_SNP [dm6]	A	T	4.971e^-4	1	INTERGENIC
3L	10962696	3L_10962696_SNP [dm3] 3L_10969596_SNP [dm6]	A	T	4.977e^-4	1	INTERGENIC
2L	11338547	2L_11338547_SNP [dm3] 2L_11338547_SNP [dm6]	G	C	4.989e^-4	1	DOWNSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	21862388	3R_21862388_SNP [dm3] 3R_26036666_SNP [dm6]	G	T	5.006e^-4	1	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7800240	3L_7800240_SNP [dm3] 3L_7807140_SNP [dm6]	G	A	5.007e^-4	1	INTRON CG32369
3R	13123658	3R_13123658_DEL [dm3] 3R_17297936_DEL [dm6]	CGC	C	5.009e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5786860	X_5786860_SNP [dm3] X_5892827_SNP [dm6]	T	C	5.024e^-4	1	INTRON CR45668
X	14775523	X_14775523_SNP [dm3] X_14881490_SNP [dm6]	G	C	5.024e^-4	1	INTRON Flo2 & 2 others	TF binding site mE1_TFBS_HSA
2L	11338550	2L_11338550_SNP [dm3] 2L_11338550_SNP [dm6]	C	G	5.028e^-4	1	DOWNSTREAM CR44585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	5253108	X_5253108_SNP [dm3] X_5359075_SNP [dm6]	T	A	5.033e^-4	1	INTRON SK
3L	8462649	3L_8462649_SNP [dm3] 3L_8469549_SNP [dm6]	C	A	5.033e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9959423	3R_9959423_SNP [dm3] 3R_14133701_SNP [dm6]	C	T	5.052e^-4	1	INTERGENIC
2L	14893029	2L_14893029_SNP [dm3] 2L_14893029_SNP [dm6]	G	A	5.058e^-4	1	INTERGENIC
2L	2262211	2L_2262211_INS [dm3] 2L_2262211_INS [dm6]	C	CGCCCAACC	5.059e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4405487	3L_4405487_SNP [dm3] 3L_4405487_SNP [dm6]	T	C	5.063e^-4	1	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18504000	3L_18504000_SNP [dm3] 3L_18510900_SNP [dm6]	G	A	5.076e^-4	1	INTERGENIC
2R	19247116	2R_19247116_SNP [dm3] 2R_23359593_SNP [dm6]	T	C	5.079e^-4	1	SYNONYMOUS_CODING CG34424 UPSTREAM CR44168 DOWNSTREAM vir & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12487159	2R_12487159_SNP [dm3] 2R_16599654_SNP [dm6]	T	A	5.084e^-4	1	SYNONYMOUS_CODING CG5089 INTRON CG8303
3L	10125081	3L_10125081_SNP [dm3] 3L_10131981_SNP [dm6]	A	G	5.086e^-4	1	INTRON dpr6
2L	3500370	2L_3500370_SNP [dm3] 2L_3500370_SNP [dm6]	A	T	5.089e^-4	1	DOWNSTREAM tim INTRON tim
3L	2792779	3L_2792779_SNP [dm3] 3L_2792779_SNP [dm6]	C	T	5.102e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9179313	2R_9179313_SNP [dm3] 2R_13291808_SNP [dm6]	G	T	5.113e^-4	1	INTRON Dh31-R
2R	9179314	2R_9179314_SNP [dm3] 2R_13291809_SNP [dm6]	A	G	5.113e^-4	1	INTRON Dh31-R
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	5.121e^-4	1	UPSTREAM CR45406 INTERGENIC
3L	5141777	3L_5141777_INS [dm3] 3L_5148677_INS [dm6]	T	TGT	5.130e^-4	1	SPLICE_SITE_REGION Aats-ala-m INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo
2R	18232995	2R_18232995_SNP [dm3] 2R_22345490_SNP [dm6]	A	G	5.135e^-4	1	INTRON Liprin-gamma
2R	7151419	2R_7151419_SNP [dm3] 2R_11263914_SNP [dm6]	A	C	5.145e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	22992255	3R_22992255_SNP [dm3] 3R_27166533_SNP [dm6]	T	C	5.146e^-4	1	UPSTREAM CG34293 INTRON spn-D	regulatory region REDfly_CRMs
3R	25638980	3R_25638980_SNP [dm3] 3R_29813258_SNP [dm6]	T	C	5.147e^-4	1	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19977416	2L_19977416_SNP [dm3] 2L_19977416_SNP [dm6]	T	C	5.150e^-4	1	INTRON CG43861
3L	15503358	3L_15503358_SNP [dm3] 3L_15510258_SNP [dm6]	C	T	5.161e^-4	1	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	4797147	3L_4797147_SNP [dm3] 3L_4797147_SNP [dm6]	A	C	5.196e^-4	1	DOWNSTREAM RhoGEF64C INTERGENIC
3L	15459090	3L_15459090_SNP [dm3] 3L_15465990_SNP [dm6]	G	A	5.200e^-4	1	INTERGENIC
3L	12579977	3L_12579977_SNP [dm3] 3L_12586877_SNP [dm6]	C	T	5.200e^-4	1	INTRON ara
2R	8800215	2R_8800215_SNP [dm3] 2R_12912710_SNP [dm6]	A	C	5.209e^-4	1	INTERGENIC
X	2546707	X_2546707_SNP [dm3] X_2652674_SNP [dm6]	T	G	5.210e^-4	1	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5253085	X_5253085_SNP [dm3] X_5359052_SNP [dm6]	C	T	5.221e^-4	1	INTRON SK
X	5252990	X_5252990_SNP [dm3] X_5358957_SNP [dm6]	A	C	5.224e^-4	1	INTRON SK
3R	9623853	3R_9623853_SNP [dm3] 3R_13798131_SNP [dm6]	T	A	5.272e^-4	1	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10962877	3L_10962877_SNP [dm3] 3L_10969777_SNP [dm6]	C	T	5.278e^-4	1	INTERGENIC
3L	14146008	3L_14146008_SNP [dm3] 3L_14152908_SNP [dm6]	T	C	5.292e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17368663	2L_17368663_SNP [dm3] 2L_17368663_SNP [dm6]	C	A	5.298e^-4	1	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14200416	3R_14200416_SNP [dm3] 3R_18374694_SNP [dm6]	G	A	5.303e^-4	1	EXON CR44946	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	10887369	2L_10887369_SNP [dm3] 2L_10887369_SNP [dm6]	G	A	5.309e^-4	1	DOWNSTREAM CG14071 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	17881094	2R_17881094_SNP [dm3] 2R_21993589_SNP [dm6]	C	T	5.310e^-4	1	INTRON CG34370
3R	23412741	3R_23412741_SNP [dm3] 3R_27587019_SNP [dm6]	C	T	5.312e^-4	1	SYNONYMOUS_CODING CG5639 DOWNSTREAM raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24908362	3R_24908362_SNP [dm3] 3R_29082640_SNP [dm6]	G	T	5.314e^-4	1	INTRON CG11873	TF binding site mE1_TFBS_inv
3L	1878744	3L_1878744_SNP [dm3] 3L_1878744_SNP [dm6]	C	T	5.317e^-4	1	INTRON CG13937
3L	3780847	3L_3780847_SNP [dm3] 3L_3780847_SNP [dm6]	G	A	5.329e^-4	1	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15343230	2R_15343230_SNP [dm3] 2R_19455725_SNP [dm6]	G	T	5.331e^-4	1	UPSTREAM par-1 & 1 other DOWNSTREAM CG7744 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1494607	2L_1494607_SNP [dm3] 2L_1494607_SNP [dm6]	C	T	5.335e^-4	1	SYNONYMOUS_CODING CG33128 UPSTREAM CG31926 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9446969	2L_9446969_DEL [dm3] 2L_9446969_DEL [dm6]	AACTGCTTTA	A	5.340e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	12923960	2L_12923960_SNP [dm3] 2L_12923960_SNP [dm6]	T	C	5.348e^-4	1	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	13095418	2L_13095418_SNP [dm3] 2L_13095418_SNP [dm6]	T	C	5.351e^-4	1	INTERGENIC
3L	9865633	3L_9865633_SNP [dm3] 3L_9872533_SNP [dm6]	G	T	5.356e^-4	1	INTERGENIC
2R	15218521	2R_15218521_SNP [dm3] 2R_19331016_SNP [dm6]	T	C	5.364e^-4	1	SYNONYMOUS_CODING CG34045 INTRON Rgk1
X	13985639	X_13985639_DEL [dm3] X_14091606_DEL [dm6]	CTTGGCA	C	5.406e^-4	1	INTERGENIC
2L	9673766	2L_9673766_SNP [dm3] 2L_9673766_SNP [dm6]	C	T	5.410e^-4	1	INTERGENIC
3L	10006285	3L_10006285_SNP [dm3] 3L_10013185_SNP [dm6]	G	A	5.416e^-4	1	INTRON dpr6	TF binding site mE1_TFBS_HSA
3L	19340289	3L_19340289_SNP [dm3] 3L_19347189_SNP [dm6]	G	T	5.423e^-4	1	INTRON CG32206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16947591	2L_16947591_SNP [dm3] 2L_16947591_SNP [dm6]	T	A	5.433e^-4	1	DOWNSTREAM CR44393 INTERGENIC
3R	14508851	3R_14508851_SNP [dm3] 3R_18683129_SNP [dm6]	C	T	5.439e^-4	1	SYNONYMOUS_CODING CG7708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15463926	2L_15463926_SNP [dm3] 2L_15463926_SNP [dm6]	G	T	5.449e^-4	1	DOWNSTREAM CR44863 INTERGENIC
2L	735595	2L_735595_SNP [dm3] 2L_735595_SNP [dm6]	A	G	5.450e^-4	1	INTERGENIC
3L	8703420	3L_8703420_SNP [dm3] 3L_8710320_SNP [dm6]	A	G	5.460e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	19940735	2L_19940735_SNP [dm3] 2L_19940735_SNP [dm6]	G	T	5.466e^-4	1	INTRON sick	TF binding site mE1_TFBS_sens
3R	25628802	3R_25628802_SNP [dm3] 3R_29803080_SNP [dm6]	T	C	5.486e^-4	1	UPSTREAM CG7789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	4538476	3L_4538476_SNP [dm3] 3L_4538476_SNP [dm6]	G	A	5.502e^-4	1	SYNONYMOUS_CODING CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
3L	2217051	3L_2217051_SNP [dm3] 3L_2217051_SNP [dm6]	G	C	5.507e^-4	1	INTERGENIC
2L	14081373	2L_14081373_SNP [dm3] 2L_14081373_SNP [dm6]	T	C	5.513e^-4	1	INTRON nAChRalpha5
3L	2544628	3L_2544628_SNP [dm3] 3L_2544628_SNP [dm6]	A	T	5.523e^-4	1	INTRON Spn
3L	9801165	3L_9801165_SNP [dm3] 3L_9808065_SNP [dm6]	A	T	5.524e^-4	1	UTR_3_PRIME CG32052	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	14286391	3L_14286391_SNP [dm3] 3L_14293291_SNP [dm6]	A	T	5.525e^-4	1	INTRON fz
2R	11154052	2R_11154052_SNP [dm3] 2R_15266547_SNP [dm6]	A	T	5.542e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
2R	9557978	2R_9557978_SNP [dm3] 2R_13670473_SNP [dm6]	C	T	5.544e^-4	1	SYNONYMOUS_CODING CG18368 INTRON fas
2R	19439670	2R_19439670_SNP [dm3] 2R_23552147_SNP [dm6]	C	A	5.558e^-4	1	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2388059	2L_2388059_SNP [dm3] 2L_2388059_SNP [dm6]	G	A	5.588e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26859820	3R_26859820_SNP [dm3] 3R_31034098_SNP [dm6]	T	C	5.599e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	735623	2L_735623_SNP [dm3] 2L_735623_SNP [dm6]	T	G	5.600e^-4	1	INTERGENIC
3L	17940750	3L_17940750_SNP [dm3] 3L_17947650_SNP [dm6]	C	T	5.606e^-4	1	EXON CR45393
X	5252880	X_5252880_SNP [dm3] X_5358847_SNP [dm6]	C	A	5.606e^-4	1	INTRON SK
2L	7623933	2L_7623933_SNP [dm3] 2L_7623933_SNP [dm6]	T	C	5.610e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12066162	3L_12066162_SNP [dm3] 3L_12073062_SNP [dm6]	T	G	5.616e^-4	1	INTRON Sema-5c
2L	10826445	2L_10826445_SNP [dm3] 2L_10826445_SNP [dm6]	A	G	5.617e^-4	1	INTRON Nos
3R	20097378	3R_20097378_SNP [dm3] 3R_24271656_SNP [dm6]	G	A	5.620e^-4	1	UPSTREAM jar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10463972	3R_10463972_SNP [dm3] 3R_14638250_SNP [dm6]	A	G	5.630e^-4	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10463975	3R_10463975_SNP [dm3] 3R_14638253_SNP [dm6]	T	C	5.630e^-4	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	18700583	X_18700583_SNP [dm3] X_18806550_SNP [dm6]	A	G	5.646e^-4	1	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7622889	2L_7622889_SNP [dm3] 2L_7622889_SNP [dm6]	A	T	5.660e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	4734721	X_4734721_SNP [dm3] X_4840688_SNP [dm6]	T	A	5.667e^-4	1	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14410108	2R_14410108_SNP [dm3] 2R_18522603_SNP [dm6]	C	T	5.669e^-4	1	SYNONYMOUS_CODING CG43066	TF binding site mE1_TFBS_chinmo
3L	21247970	3L_21247970_SNP [dm3] 3L_21254870_SNP [dm6]	A	T	5.670e^-4	1	INTRON Eip78C
3L	12390365	3L_12390365_SNP [dm3] 3L_12397265_SNP [dm6]	A	G	5.676e^-4	1	SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5582907	3L_5582907_SNP [dm3] 3L_5589807_SNP [dm6]	G	C	5.686e^-4	1	NON_SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
3L	15503359	3L_15503359_SNP [dm3] 3L_15510259_SNP [dm6]	G	T	5.693e^-4	1	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	17547218	X_17547218_SNP [dm3] X_17653185_SNP [dm6]	C	T	5.694e^-4	1	SYNONYMOUS_CODING IntS2 UPSTREAM RhoGAPp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	12006421	3L_12006421_DEL [dm3] 3L_12013321_DEL [dm6]	TGGT	T	5.705e^-4	1	CODON_DELETION rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13276254	2L_13276254_SNP [dm3] 2L_13276254_SNP [dm6]	A	T	5.712e^-4	1	SYNONYMOUS_CODING CG44085 UTR_3_PRIME CG44085	TF binding site BDTNP1_TFBS_twi
2R	15449241	2R_15449241_SNP [dm3] 2R_19561736_SNP [dm6]	T	C	5.725e^-4	1	INTRON sm
2R	20613572	2R_20613572_SNP [dm3] 2R_24726049_SNP [dm6]	T	C	5.726e^-4	1	NON_SYNONYMOUS_CODING Mid1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17606090	2R_17606090_SNP [dm3] 2R_21718585_SNP [dm6]	T	A	5.730e^-4	1	NON_SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9179293	2R_9179293_SNP [dm3] 2R_13291788_SNP [dm6]	A	G	5.737e^-4	1	INTRON Dh31-R
2R	9179303	2R_9179303_SNP [dm3] 2R_13291798_SNP [dm6]	T	C	5.737e^-4	1	INTRON Dh31-R
2R	9179322	2R_9179322_SNP [dm3] 2R_13291817_SNP [dm6]	A	G	5.737e^-4	1	INTRON Dh31-R
2L	8472879	2L_8472879_SNP [dm3] 2L_8472879_SNP [dm6]	C	G	5.744e^-4	1	INTRON d
3L	11121472	3L_11121472_SNP [dm3] 3L_11128372_SNP [dm6]	A	G	5.750e^-4	1	INTRON CG42575
2L	2618739	2L_2618739_SNP [dm3] 2L_2618739_SNP [dm6]	C	T	5.753e^-4	1	INTERGENIC
2R	7290211	2R_7290211_SNP [dm3] 2R_11402706_SNP [dm6]	G	A	5.758e^-4	1	INTERGENIC
X	12452847	X_12452847_SNP [dm3] X_12558814_SNP [dm6]	G	A	5.758e^-4	1	INTRON CG43921
2R	17732016	2R_17732016_SNP [dm3] 2R_21844511_SNP [dm6]	C	G	5.762e^-4	1	INTERGENIC
2L	14061360	2L_14061360_SNP [dm3] 2L_14061360_SNP [dm6]	G	A	5.767e^-4	1	UTR_5_PRIME nAChRalpha5
3R	23264155	3R_23264155_MNP [dm3] 3R_27438433_MNP [dm6]	TGATTG	AATAAT	5.767e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	551990	2L_551990_SNP [dm3] 2L_551990_SNP [dm6]	G	T	5.773e^-4	1	UTR_5_PRIME Ets21C
3R	24780999	3R_24780999_SNP [dm3] 3R_28955277_SNP [dm6]	T	C	5.792e^-4	1	INTRON CG14521
3L	3022618	3L_3022618_SNP [dm3] 3L_3022618_SNP [dm6]	C	G	5.795e^-4	1	INTERGENIC
3R	14971760	3R_14971760_SNP [dm3] 3R_19146038_SNP [dm6]	A	C	5.802e^-4	1	INTRON Ppcs
3R	2495088	3R_2495088_SNP [dm3] 3R_6669366_SNP [dm6]	T	A	5.803e^-4	1	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	27166486	3R_27166486_SNP [dm3] 3R_31340764_SNP [dm6]	G	A	5.809e^-4	1	INTRON CG34347
3R	17338753	3R_17338753_SNP [dm3] 3R_21513031_SNP [dm6]	T	C	5.819e^-4	1	DOWNSTREAM C15 INTERGENIC
3L	12181208	3L_12181208_SNP [dm3] 3L_12188108_SNP [dm6]	T	C	5.828e^-4	1	UPSTREAM Est-6 DOWNSTREAM CG6910 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	9867276	3L_9867276_SNP [dm3] 3L_9874176_SNP [dm6]	A	T	5.829e^-4	1	INTERGENIC
3L	11928194	3L_11928194_SNP [dm3] 3L_11935094_SNP [dm6]	C	G	5.830e^-4	1	NON_SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo
2R	11805007	2R_11805007_SNP [dm3] 2R_15917502_SNP [dm6]	G	A	5.833e^-4	1	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15355318	3L_15355318_SNP [dm3] 3L_15362218_SNP [dm6]	G	A	5.865e^-4	1	INTERGENIC
3L	9865111	3L_9865111_SNP [dm3] 3L_9872011_SNP [dm6]	A	T	5.865e^-4	1	INTERGENIC	TF binding site mE1_TFBS_D
3L	11654610	3L_11654610_SNP [dm3] 3L_11661510_SNP [dm6]	A	G	5.868e^-4	1	INTRON CG32085
3L	10807710	3L_10807710_SNP [dm3] 3L_10814610_SNP [dm6]	T	C	5.884e^-4	1	UPSTREAM CG42831 INTERGENIC
2L	12924333	2L_12924333_SNP [dm3] 2L_12924333_SNP [dm6]	C	T	5.885e^-4	1	NON_SYNONYMOUS_CODING ACXA SPLICE_SITE_REGION ACXA UTR_3_PRIME ACXA INTRON ACXA	TF binding site mE1_TFBS_HSA
3L	11845836	3L_11845836_SNP [dm3] 3L_11852736_SNP [dm6]	T	C	5.889e^-4	1	INTRON CG44837
3L	11102006	3L_11102006_SNP [dm3] 3L_11108906_SNP [dm6]	G	A	5.889e^-4	1	SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
2L	11490890	2L_11490890_SNP [dm3] 2L_11490890_SNP [dm6]	G	A	5.905e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14208783	2R_14208783_SNP [dm3] 2R_18321278_SNP [dm6]	A	G	5.915e^-4	1	INTRON sbb
2L	19621744	2L_19621744_SNP [dm3] 2L_19621744_SNP [dm6]	A	G	5.916e^-4	1	INTRON Lar
3R	24190417	3R_24190417_SNP [dm3] 3R_28364695_SNP [dm6]	G	A	5.917e^-4	1	INTERGENIC
2L	11490888	2L_11490888_SNP [dm3] 2L_11490888_SNP [dm6]	A	T	5.922e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12630312	2R_12630312_SNP [dm3] 2R_16742807_SNP [dm6]	G	C	5.923e^-4	1	INTERGENIC
X	9079491	X_9079491_INS [dm3] X_9185458_INS [dm6]	T	TTTTGTTT	5.925e^-4	1	UTR_3_PRIME mei-P26
2L	8232158	2L_8232158_SNP [dm3] 2L_8232158_SNP [dm6]	A	G	5.930e^-4	1	INTRON Pvr
2L	5636163	2L_5636163_SNP [dm3] 2L_5636163_SNP [dm6]	A	G	5.932e^-4	1	INTRON CG31646
2R	4150008	2R_4150008_SNP [dm3] 2R_8262503_SNP [dm6]	A	T	5.934e^-4	1	DOWNSTREAM CG12126 & 1 other INTERGENIC
2R	12082069	2R_12082069_SNP [dm3] 2R_16194564_SNP [dm6]	G	A	5.937e^-4	1	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
2R	10995555	2R_10995555_SNP [dm3] 2R_15108050_SNP [dm6]	A	C	5.938e^-4	1	INTERGENIC
2L	6133234	2L_6133234_SNP [dm3] 2L_6133234_SNP [dm6]	C	G	5.945e^-4	1	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6133248	2L_6133248_SNP [dm3] 2L_6133248_SNP [dm6]	T	C	5.945e^-4	1	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6133263	2L_6133263_SNP [dm3] 2L_6133263_SNP [dm6]	C	T	5.945e^-4	1	DOWNSTREAM CG9222 EXON CR45719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6133266	2L_6133266_SNP [dm3] 2L_6133266_SNP [dm6]	T	A	5.945e^-4	1	DOWNSTREAM CG9222 EXON CR45719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7434902	X_7434902_SNP [dm3] X_7540869_SNP [dm6]	T	A	5.961e^-4	1	INTRON CG32719
3R	21862667	3R_21862667_SNP [dm3] 3R_26036945_SNP [dm6]	T	G	5.965e^-4	1	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5252792	X_5252792_SNP [dm3] X_5358759_SNP [dm6]	C	T	5.968e^-4	1	INTRON SK
2L	10466209	2L_10466209_SNP [dm3] 2L_10466209_SNP [dm6]	A	C	5.971e^-4	1	SPLICE_SITE_REGION RluA-1 INTRON RluA-1
2R	6143137	2R_6143137_DEL [dm3] 2R_10255632_DEL [dm6]	CC	C	5.971e^-4	1	DOWNSTREAM CG12913 INTERGENIC
2L	19978072	2L_19978072_SNP [dm3] 2L_19978072_SNP [dm6]	C	T	5.973e^-4	1	UPSTREAM CR43620 INTRON CG43861
3R	14797966	3R_14797966_SNP [dm3] 3R_18972244_SNP [dm6]	A	T	5.975e^-4	1	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10412400	2L_10412400_SNP [dm3] 2L_10412400_SNP [dm6]	A	T	5.979e^-4	1	INTRON CG5355
2R	18628057	2R_18628057_SNP [dm3] 2R_22740552_SNP [dm6]	A	G	5.979e^-4	1	UPSTREAM jbug DOWNSTREAM CG42260 INTERGENIC
2R	13113762	2R_13113762_SNP [dm3] 2R_17226257_SNP [dm6]	C	A	5.992e^-4	1	INTRON mbl
2R	14207773	2R_14207773_SNP [dm3] 2R_18320268_SNP [dm6]	G	T	5.994e^-4	1	INTRON sbb
3R	14688292	3R_14688292_SNP [dm3] 3R_18862570_SNP [dm6]	A	T	6.003e^-4	1	INTERGENIC
2R	18094196	2R_18094196_SNP [dm3] 2R_22206691_SNP [dm6]	A	G	6.009e^-4	1	INTRON CG3290	TF binding site mE1_TFBS_HSA
2R	10606865	2R_10606865_SNP [dm3] 2R_14719360_SNP [dm6]	G	T	6.024e^-4	1	INTERGENIC
X	8615668	X_8615668_SNP [dm3] X_8721635_SNP [dm6]	A	G	6.025e^-4	1	DOWNSTREAM CG1789 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20260680	2L_20260680_SNP [dm3] 2L_20260680_SNP [dm6]	A	T	6.032e^-4	1	INTERGENIC
3L	14681473	3L_14681473_SNP [dm3] 3L_14688373_SNP [dm6]	A	G	6.035e^-4	1	INTRON ome
X	20117805	X_20117805_SNP [dm3] X_20246731_SNP [dm6]	C	A	6.046e^-4	1	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
3R	14971700	3R_14971700_SNP [dm3] 3R_19145978_SNP [dm6]	G	T	6.063e^-4	1	INTRON Ppcs
3L	11095360	3L_11095360_SNP [dm3] 3L_11102260_SNP [dm6]	G	T	6.065e^-4	1	SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta
3R	13673135	3R_13673135_SNP [dm3] 3R_17847413_SNP [dm6]	G	A	6.066e^-4	1	INTRON tinc
X	953309	X_953309_SNP [dm3] X_1059276_SNP [dm6]	T	A	6.084e^-4	1	INTRON CR44779
2L	15775835	2L_15775835_SNP [dm3] 2L_15775835_SNP [dm6]	T	C	6.090e^-4	1	DOWNSTREAM CG43760 INTERGENIC
2L	797815	2L_797815_SNP [dm3] 2L_797815_SNP [dm6]	C	G	6.095e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11848164	3L_11848164_SNP [dm3] 3L_11855064_SNP [dm6]	A	G	6.106e^-4	1	INTRON CG44837
X	19019329	X_19019329_SNP [dm3] X_19125296_SNP [dm6]	A	G	6.109e^-4	1	UTR_3_PRIME tgy UPSTREAM CG15882
3R	13574720	3R_13574720_SNP [dm3] 3R_17748998_SNP [dm6]	T	A	6.114e^-4	1	INTERGENIC
2L	8352573	2L_8352573_SNP [dm3] 2L_8352573_SNP [dm6]	A	T	6.115e^-4	1	INTRON Mur29B
3L	12066255	3L_12066255_SNP [dm3] 3L_12073155_SNP [dm6]	T	G	6.115e^-4	1	INTRON Sema-5c
X	15191324	X_15191324_SNP [dm3] X_15297291_SNP [dm6]	T	C	6.125e^-4	1	UPSTREAM gce DOWNSTREAM CR44429 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14033175	3R_14033175_SNP [dm3] 3R_18207453_SNP [dm6]	A	T	6.134e^-4	1	INTRON CG7985
2L	10687285	2L_10687285_SNP [dm3] 2L_10687285_SNP [dm6]	T	C	6.142e^-4	1	UPSTREAM CG7296 INTERGENIC
3R	23264152	3R_23264152_SNP [dm3] 3R_27438430_SNP [dm6]	C	A	6.189e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23264153	3R_23264153_SNP [dm3] 3R_27438431_SNP [dm6]	G	A	6.189e^-4	1	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25921208	3R_25921208_SNP [dm3] 3R_30095486_SNP [dm6]	A	T	6.194e^-4	1	INTRON sima
3L	12807132	3L_12807132_SNP [dm3] 3L_12814032_SNP [dm6]	G	T	6.196e^-4	1	UPSTREAM CG42588 & 1 other DOWNSTREAM Sap130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7479329	X_7479329_SNP [dm3] X_7585296_SNP [dm6]	C	T	6.208e^-4	1	DOWNSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
2R	11154073	2R_11154073_SNP [dm3] 2R_15266568_SNP [dm6]	C	G	6.230e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
3L	7358822	3L_7358822_SNP [dm3] 3L_7365722_SNP [dm6]	T	C	6.239e^-4	1	NON_SYNONYMOUS_CODING Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	12422457	3R_12422457_SNP [dm3] 3R_16596735_SNP [dm6]	A	G	6.250e^-4	1	SPLICE_SITE_REGION CG14892 DOWNSTREAM CG10345 INTRON CG14892	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25515841	3R_25515841_SNP [dm3] 3R_29690119_SNP [dm6]	A	T	6.257e^-4	1	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12637529	2R_12637529_SNP [dm3] 2R_16750024_SNP [dm6]	T	G	6.261e^-4	1	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
3L	18233092	3L_18233092_SNP [dm3] 3L_18239992_SNP [dm6]	C	T	6.273e^-4	1	INTERGENIC
2L	9446940	2L_9446940_SNP [dm3] 2L_9446940_SNP [dm6]	G	A	6.277e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10547909	3L_10547909_SNP [dm3] 3L_10554809_SNP [dm6]	T	C	6.289e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5623408	2R_5623408_SNP [dm3] 2R_9735903_SNP [dm6]	C	G	6.294e^-4	1	INTRON sqa
3L	17285884	3L_17285884_SNP [dm3] 3L_17292784_SNP [dm6]	T	G	6.294e^-4	1	INTERGENIC
2L	18219571	2L_18219571_SNP [dm3] 2L_18219571_SNP [dm6]	A	G	6.306e^-4	1	INTRON CG42750
3R	19220892	3R_19220892_SNP [dm3] 3R_23395170_SNP [dm6]	G	A	6.306e^-4	1	INTERGENIC
3R	24787856	3R_24787856_SNP [dm3] 3R_28962134_SNP [dm6]	G	A	6.310e^-4	1	INTRON CG14521
2L	18219554	2L_18219554_SNP [dm3] 2L_18219554_SNP [dm6]	C	T	6.319e^-4	1	INTRON CG42750
3L	5141439	3L_5141439_SNP [dm3] 3L_5148339_SNP [dm6]	G	A	6.324e^-4	1	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
3L	19158207	3L_19158207_SNP [dm3] 3L_19165107_SNP [dm6]	C	G	6.331e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	4435945	2R_4435945_SNP [dm3] 2R_8548440_SNP [dm6]	C	G	6.332e^-4	1	INTERGENIC
2R	907417	2R_907417_SNP [dm3] 2R_5019912_SNP [dm6]	A	T	6.333e^-4	1	INTRON Ir41a	transposable element FlyBase
3L	11651323	3L_11651323_SNP [dm3] 3L_11658223_SNP [dm6]	C	T	6.341e^-4	1	INTRON CG32085
2R	2043779	2R_2043779_SNP [dm3] 2R_6156274_SNP [dm6]	T	C	6.344e^-4	1	START_GAINED EcR UTR_5_PRIME EcR INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	797214	2L_797214_SNP [dm3] 2L_797214_SNP [dm6]	A	T	6.347e^-4	1	INTERGENIC
2R	13394591	2R_13394591_SNP [dm3] 2R_17507086_SNP [dm6]	A	T	6.351e^-4	1	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
3R	11386769	3R_11386769_SNP [dm3] 3R_15561047_SNP [dm6]	C	T	6.351e^-4	1	INTERGENIC
2L	7623937	2L_7623937_SNP [dm3] 2L_7623937_SNP [dm6]	G	C	6.364e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14196470	3L_14196470_SNP [dm3] 3L_14203370_SNP [dm6]	G	T	6.366e^-4	1	UTR_5_PRIME CG32141 INTRON nuf
2R	11809625	2R_11809625_SNP [dm3] 2R_15922120_SNP [dm6]	C	T	6.370e^-4	1	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	7125026	2R_7125026_SNP [dm3] 2R_11237521_SNP [dm6]	G	A	6.374e^-4	1	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3652893	3R_3652893_SNP [dm3] 3R_7827171_SNP [dm6]	T	C	6.377e^-4	1	INTRON CG34384
3L	15904894	3L_15904894_DEL [dm3] 3L_15911794_DEL [dm6]	ACAACA	A	6.378e^-4	1	INTRON sff
X	10782867	X_10782867_DEL [dm3] X_10888834_DEL [dm6]	GTATTAAA	G	6.390e^-4	1	INTRON Ork1
2R	9182294	2R_9182294_SNP [dm3] 2R_13294789_SNP [dm6]	C	T	6.390e^-4	1	INTRON Dh31-R

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.128e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.004331
In_3R_P	0.010503

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	9.5568	0.002
In_3R_P	8.955	0.0114

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1474 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	795482	2L_795482_SNP [dm3] 2L_795482_SNP [dm6]	T	C	2.927e^-6	1	INTERGENIC
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	3.870e^-6	1	SYNONYMOUS_CODING Or65a
3R	25692153	3R_25692153_SNP [dm3] 3R_29866431_SNP [dm6]	G	T	4.213e^-6	1	UPSTREAM Zip99C INTRON Zip99C
3R	25638254	3R_25638254_SNP [dm3] 3R_29812532_SNP [dm6]	A	G	4.741e^-6	1	INTRON ca	TF binding site mE1_TFBS_chinmo
2R	17881794	2R_17881794_SNP [dm3] 2R_21994289_SNP [dm6]	A	G	5.170e^-6	1	INTRON CG34370
X	8062946	X_8062946_SNP [dm3] X_8168913_SNP [dm6]	T	G	6.538e^-6	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7056349	X_7056349_SNP [dm3] X_7162316_SNP [dm6]	T	A	7.152e^-6	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19963585	2L_19963585_SNP [dm3] 2L_19963585_SNP [dm6]	G	A	7.274e^-6	1	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG10680 DOWNSTREAM CR45701
2L	10826449	2L_10826449_SNP [dm3] 2L_10826449_SNP [dm6]	A	G	7.911e^-6	1	INTRON Nos
3L	16463387	3L_16463387_SNP [dm3] 3L_16470287_SNP [dm6]	G	T	1.255e^-5	1	DOWNSTREAM aos INTRON CG33158
2R	17881936	2R_17881936_DEL [dm3] 2R_21994431_DEL [dm6]	TTTATGC	A	1.308e^-5	1	INTRON CG34370
2R	17881946	2R_17881946_SNP [dm3] 2R_21994441_SNP [dm6]	T	A	1.308e^-5	1	INTRON CG34370
3L	7865775	3L_7865775_SNP [dm3] 3L_7872675_SNP [dm6]	T	A	1.313e^-5	1	INTRON CG32365	TF binding site mE1_TFBS_kn
X	9689591	X_9689591_SNP [dm3] X_9795558_SNP [dm6]	T	G	1.341e^-5	1	INTRON CG32698
X	8062932	X_8062932_SNP [dm3] X_8168899_SNP [dm6]	C	T	1.344e^-5	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17881997	2R_17881997_SNP [dm3] 2R_21994492_SNP [dm6]	A	T	1.383e^-5	1	INTRON CG34370
3L	10454573	3L_10454573_SNP [dm3] 3L_10461473_SNP [dm6]	C	T	1.549e^-5	1	NON_SYNONYMOUS_CODING Gem3
X	16877122	X_16877122_DEL [dm3] X_16983089_DEL [dm6]	GACAAAG	G	1.768e^-5	1	INTRON CG45002
2R	17597884	2R_17597884_SNP [dm3] 2R_21710379_SNP [dm6]	T	C	1.839e^-5	1	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
2L	8231590	2L_8231590_SNP [dm3] 2L_8231590_SNP [dm6]	A	G	2.128e^-5	1	UPSTREAM Pvr INTRON Pvr
2L	3301037	2L_3301037_SNP [dm3] 2L_3301037_SNP [dm6]	A	T	2.248e^-5	1	INTRON CG9663
2R	14992596	2R_14992596_SNP [dm3] 2R_19105091_SNP [dm6]	C	T	2.277e^-5	1	INTRON 5-HT1A
X	16876533	X_16876533_SNP [dm3] X_16982500_SNP [dm6]	C	T	2.318e^-5	1	INTRON CG45002
3L	13916975	3L_13916975_SNP [dm3] 3L_13923875_SNP [dm6]	C	T	2.395e^-5	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9764578	2L_9764578_SNP [dm3] 2L_9764578_SNP [dm6]	C	A	2.458e^-5	1	SYNONYMOUS_CODING und DOWNSTREAM ppk18	TF binding site mE1_TFBS_cad
X	8062944	X_8062944_SNP [dm3] X_8168911_SNP [dm6]	A	T	2.723e^-5	1	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2586734	3R_2586734_SNP [dm3] 3R_6761012_SNP [dm6]	A	G	2.881e^-5	1	DOWNSTREAM CR45593 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3L	530282	3L_530282_SNP [dm3] 3L_530282_SNP [dm6]	G	C	2.892e^-5	1	INTRON klar
3L	8737992	3L_8737992_SNP [dm3] 3L_8744892_SNP [dm6]	A	C	3.298e^-5	1	INTRON Prm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3861183	2L_3861183_SNP [dm3] 2L_3861183_SNP [dm6]	T	C	3.382e^-5	1	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15858011	3L_15858011_SNP [dm3] 3L_15864911_SNP [dm6]	C	A	3.629e^-5	1	INTRON pHCl
2L	6817002	2L_6817002_DEL [dm3] 2L_6817002_DEL [dm6]	ATAGCGAA	A	3.635e^-5	1	INTERGENIC
2L	6817012	2L_6817012_SNP [dm3] 2L_6817012_SNP [dm6]	T	C	3.635e^-5	1	INTERGENIC
2L	6817015	2L_6817015_SNP [dm3] 2L_6817015_SNP [dm6]	C	A	3.635e^-5	1	INTERGENIC
2L	6817020	2L_6817020_DEL [dm3] 2L_6817020_DEL [dm6]	TC	A	3.635e^-5	1	INTERGENIC
X	21148942	X_21148942_SNP [dm3] X_21277915_SNP [dm6]	A	G	3.759e^-5	1	INTRON CG32521
X	18700583	X_18700583_SNP [dm3] X_18806550_SNP [dm6]	A	G	3.780e^-5	1	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14249827	2L_14249827_SNP [dm3] 2L_14249827_SNP [dm6]	A	T	3.825e^-5	1	INTERGENIC
2L	7262991	2L_7262991_SNP [dm3] 2L_7262991_SNP [dm6]	G	A	4.021e^-5	1	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12849231	X_12849231_INS [dm3] X_12955198_INS [dm6]	A	AGAAACACA	4.026e^-5	1	INTRON hec
X	9689692	X_9689692_SNP [dm3] X_9795659_SNP [dm6]	T	G	4.090e^-5	1	INTRON CG32698
2L	19799519	2L_19799519_SNP [dm3] 2L_19799519_SNP [dm6]	T	A	4.152e^-5	1	INTRON sick	TF binding site mE1_TFBS_cad
2L	3299887	2L_3299887_SNP [dm3] 2L_3299887_SNP [dm6]	T	G	4.200e^-5	1	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9965398	3L_9965398_SNP [dm3] 3L_9972298_SNP [dm6]	A	T	4.445e^-5	1	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4133259	3L_4133259_SNP [dm3] 3L_4133259_SNP [dm6]	G	C	4.669e^-5	1	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14992543	2R_14992543_SNP [dm3] 2R_19105038_SNP [dm6]	G	A	4.688e^-5	1	INTRON 5-HT1A
2R	14992561	2R_14992561_SNP [dm3] 2R_19105056_SNP [dm6]	A	T	4.753e^-5	1	INTRON 5-HT1A
3R	9675733	3R_9675733_SNP [dm3] 3R_13850011_SNP [dm6]	T	A	5.036e^-5	1	INTERGENIC
3L	8835411	3L_8835411_SNP [dm3] 3L_8842311_SNP [dm6]	T	A	5.150e^-5	1	INTRON dally
3L	9962939	3L_9962939_SNP [dm3] 3L_9969839_SNP [dm6]	C	T	5.213e^-5	1	INTRON Nc
X	8988935	X_8988935_SNP [dm3] X_9094902_SNP [dm6]	C	T	5.226e^-5	1	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7602336	2R_7602336_SNP [dm3] 2R_11714831_SNP [dm6]	C	G	5.242e^-5	1	INTRON pyr
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	5.271e^-5	1	INTERGENIC
2L	6817017	2L_6817017_SNP [dm3] 2L_6817017_SNP [dm6]	T	G	5.308e^-5	1	INTERGENIC
3L	13793625	3L_13793625_SNP [dm3] 3L_13800525_SNP [dm6]	A	G	5.375e^-5	1	INTRON bru-3
2L	13293022	2L_13293022_SNP [dm3] 2L_13293022_SNP [dm6]	T	G	5.734e^-5	1	UTR_5_PRIME CG16824 INTRON CG31729
X	1180662	X_1180662_SNP [dm3] X_1286629_SNP [dm6]	G	A	5.917e^-5	1	UPSTREAM CG32812 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens
X	13060061	X_13060061_SNP [dm3] X_13166028_SNP [dm6]	G	A	6.042e^-5	1	INTRON CG34411
2L	9649188	2L_9649188_SNP [dm3] 2L_9649188_SNP [dm6]	C	T	6.165e^-5	1	INTRON Apoltp
2R	17991446	2R_17991446_SNP [dm3] 2R_22103941_SNP [dm6]	G	T	6.306e^-5	1	SPLICE_SITE_REGION CG6613 SYNONYMOUS_CODING CG6613
X	5591160	X_5591160_SNP [dm3] X_5697127_SNP [dm6]	T	C	6.321e^-5	1	EXON CR42794	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5678134	2L_5678134_SNP [dm3] 2L_5678134_SNP [dm6]	C	T	6.373e^-5	1	UPSTREAM CG12511 INTERGENIC
X	4877610	X_4877610_SNP [dm3] X_4983577_SNP [dm6]	C	T	6.448e^-5	1	INTRON CR44833	regulatory region REDfly_CRMs
X	12083984	X_12083984_SNP [dm3] X_12189951_SNP [dm6]	C	A	6.503e^-5	1	INTRON Ten-a
3L	6671934	3L_6671934_SNP [dm3] 3L_6678834_SNP [dm6]	T	G	6.597e^-5	1	INTERGENIC
3R	25691636	3R_25691636_SNP [dm3] 3R_29865914_SNP [dm6]	A	T	6.668e^-5	1	UPSTREAM Zip99C INTRON Zip99C
2L	10826429	2L_10826429_SNP [dm3] 2L_10826429_SNP [dm6]	T	C	6.719e^-5	1	INTRON Nos
X	17419140	X_17419140_SNP [dm3] X_17525107_SNP [dm6]	G	A	6.795e^-5	1	INTRON CG43658
X	17419143	X_17419143_SNP [dm3] X_17525110_SNP [dm6]	G	C	6.795e^-5	1	INTRON CG43658
3L	4618296	3L_4618296_SNP [dm3] 3L_4618296_SNP [dm6]	A	T	6.990e^-5	1	INTRON Src64B
X	18700584	X_18700584_SNP [dm3] X_18806551_SNP [dm6]	C	T	7.026e^-5	1	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	551990	2L_551990_SNP [dm3] 2L_551990_SNP [dm6]	G	T	7.107e^-5	1	UTR_5_PRIME Ets21C
3L	13448600	3L_13448600_SNP [dm3] 3L_13455500_SNP [dm6]	G	T	7.189e^-5	1	DOWNSTREAM CG10116 INTRON CG10738
2L	3235770	2L_3235770_SNP [dm3] 2L_3235770_SNP [dm6]	T	C	7.268e^-5	1	INTERGENIC
2R	18661697	2R_18661697_SNP [dm3] 2R_22774192_SNP [dm6]	G	A	7.356e^-5	1	INTRON CG42260
3L	1688659	3L_1688659_SNP [dm3] 3L_1688659_SNP [dm6]	C	T	7.392e^-5	1	UPSTREAM CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
3L	14106758	3L_14106758_SNP [dm3] 3L_14113658_SNP [dm6]	T	C	7.485e^-5	1	INTRON Sox21b
3L	14106760	3L_14106760_SNP [dm3] 3L_14113660_SNP [dm6]	A	T	7.485e^-5	1	INTRON Sox21b
3L	14106763	3L_14106763_SNP [dm3] 3L_14113663_SNP [dm6]	A	G	7.485e^-5	1	INTRON Sox21b
3L	14106765	3L_14106765_SNP [dm3] 3L_14113665_SNP [dm6]	T	G	7.485e^-5	1	INTRON Sox21b
3L	14106767	3L_14106767_DEL [dm3] 3L_14113667_DEL [dm6]	TGAATTAA	T	7.485e^-5	1	INTRON Sox21b
X	5575052	X_5575052_SNP [dm3] X_5681019_SNP [dm6]	T	C	7.544e^-5	1	SYNONYMOUS_CODING Gr5a EXON CR44958
2L	14249832	2L_14249832_SNP [dm3] 2L_14249832_SNP [dm6]	T	A	7.637e^-5	1	INTERGENIC
3L	15857924	3L_15857924_SNP [dm3] 3L_15864824_SNP [dm6]	C	T	7.839e^-5	1	INTRON pHCl
3L	22953929	3L_22953929_SNP [dm3] 3L_22960829_SNP [dm6]	A	G	7.875e^-5	1	UPSTREAM CR45758 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9637173	X_9637173_SNP [dm3] X_9743140_SNP [dm6]	C	T	7.910e^-5	1	INTRON Sp1
2R	5691057	2R_5691057_SNP [dm3] 2R_9803552_SNP [dm6]	G	T	8.048e^-5	1	INTRON CG1688
3L	11146917	3L_11146917_SNP [dm3] 3L_11153817_SNP [dm6]	C	G	8.087e^-5	1	INTRON CG32082
3L	14196470	3L_14196470_SNP [dm3] 3L_14203370_SNP [dm6]	G	T	8.120e^-5	1	UTR_5_PRIME CG32141 INTRON nuf
X	14815711	X_14815711_SNP [dm3] X_14921678_SNP [dm6]	T	A	8.199e^-5	1	UTR_5_PRIME CG9503 INTRON Flo2
3R	2586728	3R_2586728_SNP [dm3] 3R_6761006_SNP [dm6]	T	A	8.277e^-5	1	DOWNSTREAM CR45593 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
2L	14249831	2L_14249831_SNP [dm3] 2L_14249831_SNP [dm6]	C	T	8.290e^-5	1	INTERGENIC
2R	17597604	2R_17597604_SNP [dm3] 2R_21710099_SNP [dm6]	C	T	8.321e^-5	1	UTR_3_PRIME CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1120728	3L_1120728_SNP [dm3] 3L_1120728_SNP [dm6]	A	T	8.323e^-5	1	INTERGENIC
2L	7434143	2L_7434143_SNP [dm3] 2L_7434143_SNP [dm6]	A	C	8.353e^-5	1	UPSTREAM CG5958 INTERGENIC
3L	14106749	3L_14106749_SNP [dm3] 3L_14113649_SNP [dm6]	T	G	8.365e^-5	1	INTRON Sox21b
3L	8738015	3L_8738015_SNP [dm3] 3L_8744915_SNP [dm6]	A	T	8.372e^-5	1	INTRON Prm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4788001	3L_4788001_SNP [dm3] 3L_4788001_SNP [dm6]	G	C	8.496e^-5	1	INTRON RhoGEF64C
X	4132449	X_4132449_SNP [dm3] X_4238416_SNP [dm6]	C	T	8.549e^-5	1	INTERGENIC
X	7999255	X_7999255_SNP [dm3] X_8105222_SNP [dm6]	T	C	8.571e^-5	1	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14992852	2R_14992852_SNP [dm3] 2R_19105347_SNP [dm6]	T	C	8.609e^-5	1	INTRON 5-HT1A
3L	14106751	3L_14106751_DEL [dm3] 3L_14113651_DEL [dm6]	ATAT	A	8.910e^-5	1	INTRON Sox21b
3L	17499101	3L_17499101_SNP [dm3] 3L_17506001_SNP [dm6]	C	A	8.951e^-5	1	INTRON Oatp74D
X	9637721	X_9637721_SNP [dm3] X_9743688_SNP [dm6]	T	A	8.992e^-5	1	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14106778	3L_14106778_SNP [dm3] 3L_14113678_SNP [dm6]	T	A	9.043e^-5	1	INTRON Sox21b
2L	1136493	2L_1136493_SNP [dm3] 2L_1136493_SNP [dm6]	T	A	9.329e^-5	1	INTRON CG4577
X	8577473	X_8577473_SNP [dm3] X_8683440_SNP [dm6]	A	G	9.404e^-5	1	INTRON CG11284	TF binding site mE1_TFBS_sens
X	9689849	X_9689849_SNP [dm3] X_9795816_SNP [dm6]	A	C	9.406e^-5	1	INTRON CG32698
3R	24186835	3R_24186835_SNP [dm3] 3R_28361113_SNP [dm6]	A	T	9.464e^-5	1	INTERGENIC
2L	809705	2L_809705_SNP [dm3] 2L_809705_SNP [dm6]	C	T	9.481e^-5	1	UPSTREAM Nnf1b INTERGENIC
2L	9764590	2L_9764590_SNP [dm3] 2L_9764590_SNP [dm6]	C	T	9.568e^-5	1	SYNONYMOUS_CODING und DOWNSTREAM ppk18	TF binding site mE1_TFBS_cad
2L	14620190	2L_14620190_SNP [dm3] 2L_14620190_SNP [dm6]	G	C	9.664e^-5	1	INTRON osp
3R	2586738	3R_2586738_SNP [dm3] 3R_6761016_SNP [dm6]	C	T	9.822e^-5	1	DOWNSTREAM CR45593 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
2L	7262940	2L_7262940_SNP [dm3] 2L_7262940_SNP [dm6]	G	A	9.825e^-5	1	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14167370	2L_14167370_SNP [dm3] 2L_14167370_SNP [dm6]	G	A	1.017e^-4	1	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_chinmo
3L	4028722	3L_4028722_SNP [dm3] 3L_4028722_SNP [dm6]	T	A	1.026e^-4	1	NON_SYNONYMOUS_CODING Gr64b SPLICE_SITE_REGION Gr64b & 1 other UTR_5_PRIME Gr64c DOWNSTREAM Gr64a	TF binding site mE1_TFBS_inv
3L	596753	3L_596753_SNP [dm3] 3L_596753_SNP [dm6]	A	T	1.033e^-4	1	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9965393	3L_9965393_SNP [dm3] 3L_9972293_SNP [dm6]	T	G	1.039e^-4	1	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	3505414	3R_3505414_SNP [dm3] 3R_7679692_SNP [dm6]	T	C	1.065e^-4	1	INTRON Nlg1
3R	14500070	3R_14500070_SNP [dm3] 3R_18674348_SNP [dm6]	C	T	1.075e^-4	1	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad
2L	3301343	2L_3301343_SNP [dm3] 2L_3301343_SNP [dm6]	A	G	1.079e^-4	1	SYNONYMOUS_CODING CG9663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12217576	2R_12217576_SNP [dm3] 2R_16330071_SNP [dm6]	A	G	1.080e^-4	1	NON_SYNONYMOUS_CODING Vha44 INTRON Vha44	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4227247	2L_4227247_SNP [dm3] 2L_4227247_SNP [dm6]	A	T	1.088e^-4	1	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
X	21091206	X_21091206_SNP [dm3] X_21220179_SNP [dm6]	G	A	1.092e^-4	1	INTRON CG32521
2L	14453943	2L_14453943_SNP [dm3] 2L_14453943_SNP [dm6]	C	T	1.100e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21470097	3R_21470097_SNP [dm3] 3R_25644375_SNP [dm6]	T	C	1.100e^-4	1	INTRON jigr1
2R	11812372	2R_11812372_SNP [dm3] 2R_15924867_SNP [dm6]	A	C	1.113e^-4	1	SPLICE_SITE_REGION bdg INTRON bdg	TF binding site mE1_TFBS_cad
2R	9179306	2R_9179306_SNP [dm3] 2R_13291801_SNP [dm6]	T	C	1.120e^-4	1	INTRON Dh31-R
X	3287796	X_3287796_SNP [dm3] X_3393763_SNP [dm6]	C	T	1.120e^-4	1	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad
2L	4227267	2L_4227267_SNP [dm3] 2L_4227267_SNP [dm6]	T	G	1.138e^-4	1	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	16819474	2L_16819474_SNP [dm3] 2L_16819474_SNP [dm6]	A	C	1.140e^-4	1	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
3R	14535910	3R_14535910_SNP [dm3] 3R_18710188_SNP [dm6]	T	G	1.153e^-4	1	INTRON VAChT & 1 other
2R	17597835	2R_17597835_SNP [dm3] 2R_21710330_SNP [dm6]	C	A	1.153e^-4	1	NON_SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
3L	2850850	3L_2850850_SNP [dm3] 3L_2850850_SNP [dm6]	T	A	1.157e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad
2L	5636255	2L_5636255_SNP [dm3] 2L_5636255_SNP [dm6]	A	C	1.160e^-4	1	INTRON CG31646
2L	5636256	2L_5636256_SNP [dm3] 2L_5636256_SNP [dm6]	C	A	1.160e^-4	1	INTRON CG31646
2L	612933	2L_612933_INS [dm3] 2L_612933_INS [dm6]	G	GACCCC	1.164e^-4	1	INTERGENIC
2L	612934	2L_612934_DEL [dm3] 2L_612934_DEL [dm6]	TCATGGCAGTCA...	T	1.164e^-4	1	INTERGENIC
3R	10993696	3R_10993696_SNP [dm3] 3R_15167974_SNP [dm6]	C	G	1.169e^-4	1	INTRON Gyc88E
2R	14992266	2R_14992266_SNP [dm3] 2R_19104761_SNP [dm6]	T	G	1.186e^-4	1	INTRON 5-HT1A
2L	779494	2L_779494_SNP [dm3] 2L_779494_SNP [dm6]	C	T	1.203e^-4	1	SYNONYMOUS_CODING CG13947 UPSTREAM Gr21a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12624706	2R_12624706_DEL [dm3] 2R_16737201_DEL [dm6]	CTTAATTACAGCTTAGACCT...	C	1.218e^-4	1	UTR_3_PRIME CG43104 UPSTREAM CR44464
3L	13448824	3L_13448824_SNP [dm3] 3L_13455724_SNP [dm6]	C	G	1.219e^-4	1	DOWNSTREAM CG10116 INTRON CG10738
3R	6812043	3R_6812043_SNP [dm3] 3R_10986321_SNP [dm6]	C	T	1.219e^-4	1	INTRON CG34114
2R	17881900	2R_17881900_SNP [dm3] 2R_21994395_SNP [dm6]	T	C	1.232e^-4	1	INTRON CG34370
2L	3232288	2L_3232288_SNP [dm3] 2L_3232288_SNP [dm6]	C	T	1.263e^-4	1	INTERGENIC
2L	3232321	2L_3232321_SNP [dm3] 2L_3232321_SNP [dm6]	C	T	1.263e^-4	1	INTERGENIC
2L	3232328	2L_3232328_DEL [dm3] 2L_3232328_DEL [dm6]	TC	T	1.263e^-4	1	INTERGENIC
3L	9976380	3L_9976380_SNP [dm3] 3L_9983280_SNP [dm6]	C	A	1.267e^-4	1	INTRON dpr6
3R	11394504	3R_11394504_SNP [dm3] 3R_15568782_SNP [dm6]	A	T	1.274e^-4	1	INTERGENIC
3L	11116612	3L_11116612_SNP [dm3] 3L_11123512_SNP [dm6]	C	A	1.289e^-4	1	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17881879	2R_17881879_SNP [dm3] 2R_21994374_SNP [dm6]	T	C	1.290e^-4	1	INTRON CG34370
2L	13716126	2L_13716126_SNP [dm3] 2L_13716126_SNP [dm6]	A	G	1.290e^-4	1	INTRON CG31814
3L	1294483	3L_1294483_SNP [dm3] 3L_1294483_SNP [dm6]	C	T	1.306e^-4	1	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
3R	2573914	3R_2573914_DEL [dm3] 3R_6748192_DEL [dm6]	AA	A	1.318e^-4	1	UPSTREAM CG34297 INTERGENIC
2R	9179313	2R_9179313_SNP [dm3] 2R_13291808_SNP [dm6]	G	T	1.323e^-4	1	INTRON Dh31-R
2R	9179314	2R_9179314_SNP [dm3] 2R_13291809_SNP [dm6]	A	G	1.323e^-4	1	INTRON Dh31-R
2R	13814219	2R_13814219_SNP [dm3] 2R_17926714_SNP [dm6]	C	T	1.336e^-4	1	DOWNSTREAM Elk INTERGENIC
2L	6817032	2L_6817032_SNP [dm3] 2L_6817032_SNP [dm6]	G	C	1.337e^-4	1	INTERGENIC
2L	7624838	2L_7624838_MNP [dm3] 2L_7624838_MNP [dm6]	AGT	GCA	1.345e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	17285822	3L_17285822_SNP [dm3] 3L_17292722_SNP [dm6]	C	A	1.349e^-4	1	INTERGENIC
2L	6817018	2L_6817018_SNP [dm3] 2L_6817018_SNP [dm6]	A	G	1.352e^-4	1	INTERGENIC
X	12238484	X_12238484_SNP [dm3] X_12344451_SNP [dm6]	G	A	1.358e^-4	1	INTERGENIC
X	12421844	X_12421844_SNP [dm3] X_12527811_SNP [dm6]	A	T	1.361e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3L	9865596	3L_9865596_INS [dm3] 3L_9872496_INS [dm6]	G	GG	1.362e^-4	1	INTERGENIC
2L	3234118	2L_3234118_SNP [dm3] 2L_3234118_SNP [dm6]	A	G	1.365e^-4	1	INTERGENIC
2R	10808004	2R_10808004_SNP [dm3] 2R_14920499_SNP [dm6]	C	G	1.366e^-4	1	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	9179293	2R_9179293_SNP [dm3] 2R_13291788_SNP [dm6]	A	G	1.375e^-4	1	INTRON Dh31-R
2R	9179303	2R_9179303_SNP [dm3] 2R_13291798_SNP [dm6]	T	C	1.375e^-4	1	INTRON Dh31-R
2R	9179322	2R_9179322_SNP [dm3] 2R_13291817_SNP [dm6]	A	G	1.375e^-4	1	INTRON Dh31-R
2L	17361511	2L_17361511_SNP [dm3] 2L_17361511_SNP [dm6]	C	T	1.377e^-4	1	EXON CR44346
X	12028968	X_12028968_SNP [dm3] X_12134935_SNP [dm6]	A	T	1.391e^-4	1	INTRON Ten-a
3R	24822865	3R_24822865_SNP [dm3] 3R_28997143_SNP [dm6]	G	T	1.408e^-4	1	INTRON wat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8697250	2L_8697250_SNP [dm3] 2L_8697250_SNP [dm6]	A	T	1.412e^-4	1	INTRON Hnf4
X	7748498	X_7748498_SNP [dm3] X_7854465_SNP [dm6]	C	G	1.414e^-4	1	UPSTREAM CG10920 INTERGENIC
X	19050983	X_19050983_SNP [dm3] X_19156950_SNP [dm6]	C	G	1.437e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	8880919	3L_8880919_SNP [dm3] 3L_8887819_SNP [dm6]	T	C	1.455e^-4	1	DOWNSTREAM CG43169 INTRON dally
3L	14083855	3L_14083855_SNP [dm3] 3L_14090755_SNP [dm6]	A	C	1.468e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17882103	2R_17882103_SNP [dm3] 2R_21994598_SNP [dm6]	T	G	1.470e^-4	1	INTRON CG34370
3L	3780847	3L_3780847_SNP [dm3] 3L_3780847_SNP [dm6]	G	A	1.473e^-4	1	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9129506	3R_9129506_SNP [dm3] 3R_13303784_SNP [dm6]	G	T	1.475e^-4	1	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
3R	13759006	3R_13759006_SNP [dm3] 3R_17933284_SNP [dm6]	T	C	1.477e^-4	1	INTRON cpo
2L	9706530	2L_9706530_SNP [dm3] 2L_9706530_SNP [dm6]	G	A	1.490e^-4	1	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	6492489	2L_6492489_SNP [dm3] 2L_6492489_SNP [dm6]	T	A	1.503e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	4408733	2L_4408733_SNP [dm3] 2L_4408733_SNP [dm6]	T	C	1.506e^-4	1	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19965589	2L_19965589_SNP [dm3] 2L_19965589_SNP [dm6]	G	T	1.514e^-4	1	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
2L	390462	2L_390462_SNP [dm3] 2L_390462_SNP [dm6]	G	T	1.531e^-4	1	INTERGENIC
2L	9706607	2L_9706607_SNP [dm3] 2L_9706607_SNP [dm6]	T	A	1.547e^-4	1	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6817052	2L_6817052_DEL [dm3] 2L_6817052_DEL [dm6]	TT	C	1.558e^-4	1	INTERGENIC
X	981594	X_981594_SNP [dm3] X_1087561_SNP [dm6]	G	C	1.579e^-4	1	INTRON CR44779 & 1 other EXON CR44779
3R	19878929	3R_19878929_SNP [dm3] 3R_24053207_SNP [dm6]	C	A	1.582e^-4	1	SYNONYMOUS_CODING CG5991	TF binding site mE1_TFBS_chinmo
3L	9974718	3L_9974718_SNP [dm3] 3L_9981618_SNP [dm6]	C	T	1.587e^-4	1	INTRON dpr6
X	15086661	X_15086661_SNP [dm3] X_15192628_SNP [dm6]	G	A	1.604e^-4	1	INTERGENIC
2L	6492526	2L_6492526_SNP [dm3] 2L_6492526_SNP [dm6]	G	A	1.608e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
2L	6099239	2L_6099239_SNP [dm3] 2L_6099239_SNP [dm6]	C	T	1.612e^-4	1	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6817099	2L_6817099_SNP [dm3] 2L_6817099_SNP [dm6]	A	G	1.634e^-4	1	INTERGENIC
2L	12632923	2L_12632923_SNP [dm3] 2L_12632923_SNP [dm6]	C	T	1.661e^-4	1	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	530276	3L_530276_SNP [dm3] 3L_530276_SNP [dm6]	C	A	1.662e^-4	1	INTRON klar
2L	6492314	2L_6492314_SNP [dm3] 2L_6492314_SNP [dm6]	C	T	1.671e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
3L	8642197	3L_8642197_SNP [dm3] 3L_8649097_SNP [dm6]	G	C	1.700e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
2L	3303584	2L_3303584_SNP [dm3] 2L_3303584_SNP [dm6]	A	T	1.714e^-4	1	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18159529	3R_18159529_SNP [dm3] 3R_22333807_SNP [dm6]	C	T	1.722e^-4	1	DOWNSTREAM CG5388 INTRON CG5391
3L	12808089	3L_12808089_SNP [dm3] 3L_12814989_SNP [dm6]	C	G	1.728e^-4	1	UPSTREAM CG10754 INTRON CG42588	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4001952	3R_4001952_SNP [dm3] 3R_8176230_SNP [dm6]	C	T	1.744e^-4	1	INTRON grn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	10685310	3R_10685310_SNP [dm3] 3R_14859588_SNP [dm6]	A	C	1.752e^-4	1	NON_SYNONYMOUS_CODING btsz
2R	9797502	2R_9797502_SNP [dm3] 2R_13909997_SNP [dm6]	T	C	1.764e^-4	1	INTRON shot
X	8946764	X_8946764_SNP [dm3] X_9052731_SNP [dm6]	T	C	1.778e^-4	1	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17597815	2R_17597815_SNP [dm3] 2R_21710310_SNP [dm6]	C	T	1.778e^-4	1	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
2R	9179307	2R_9179307_SNP [dm3] 2R_13291802_SNP [dm6]	A	G	1.788e^-4	1	INTRON Dh31-R
2L	3300740	2L_3300740_SNP [dm3] 2L_3300740_SNP [dm6]	T	G	1.823e^-4	1	INTRON CG9663
2L	3231981	2L_3231981_SNP [dm3] 2L_3231981_SNP [dm6]	C	G	1.829e^-4	1	INTERGENIC
3L	2792446	3L_2792446_SNP [dm3] 3L_2792446_SNP [dm6]	G	A	1.837e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	1.838e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11119712	3L_11119712_SNP [dm3] 3L_11126612_SNP [dm6]	T	A	1.843e^-4	1	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	13062701	X_13062701_SNP [dm3] X_13168668_SNP [dm6]	C	A	1.844e^-4	1	INTRON CG34411
2L	6817027	2L_6817027_SNP [dm3] 2L_6817027_SNP [dm6]	A	G	1.847e^-4	1	INTERGENIC
2R	9179294	2R_9179294_SNP [dm3] 2R_13291789_SNP [dm6]	A	T	1.858e^-4	1	INTRON Dh31-R
2R	9182294	2R_9182294_SNP [dm3] 2R_13294789_SNP [dm6]	C	T	1.862e^-4	1	INTRON Dh31-R
2L	6244689	2L_6244689_SNP [dm3] 2L_6244689_SNP [dm6]	C	T	1.869e^-4	1	INTERGENIC
2L	6244700	2L_6244700_SNP [dm3] 2L_6244700_SNP [dm6]	A	C	1.869e^-4	1	INTERGENIC
3L	4614069	3L_4614069_SNP [dm3] 3L_4614069_SNP [dm6]	T	A	1.871e^-4	1	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	9176312	2R_9176312_SNP [dm3] 2R_13288807_SNP [dm6]	T	G	1.878e^-4	1	INTRON Dh31-R
3L	2795718	3L_2795718_INS [dm3] 3L_2795718_INS [dm6]	A	AATTGGTA	1.880e^-4	1	INTRON CG43444
2L	3232340	2L_3232340_SNP [dm3] 2L_3232340_SNP [dm6]	C	T	1.889e^-4	1	INTERGENIC
2L	3232360	2L_3232360_SNP [dm3] 2L_3232360_SNP [dm6]	C	A	1.889e^-4	1	INTERGENIC
2L	10259719	2L_10259719_SNP [dm3] 2L_10259719_SNP [dm6]	A	G	1.898e^-4	1	UTR_5_PRIME Pten INTRON Pten	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_Kr
2L	4219406	2L_4219406_SNP [dm3] 2L_4219406_SNP [dm6]	G	T	1.910e^-4	1	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1894235	3R_1894235_SNP [dm3] 3R_6068513_SNP [dm6]	G	T	1.924e^-4	1	INTERGENIC
X	10782434	X_10782434_SNP [dm3] X_10888401_SNP [dm6]	T	A	1.925e^-4	1	INTRON Ork1	TF binding site mE1_TFBS_inv
3L	10488888	3L_10488888_SNP [dm3] 3L_10495788_SNP [dm6]	A	G	1.926e^-4	1	INTRON A2bp1
X	5591181	X_5591181_SNP [dm3] X_5697148_SNP [dm6]	A	G	1.930e^-4	1	EXON CR42794	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17731475	2R_17731475_SNP [dm3] 2R_21843970_SNP [dm6]	T	A	1.937e^-4	1	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site mE1_TFBS_HSA
X	15534695	X_15534695_SNP [dm3] X_15640662_SNP [dm6]	A	G	1.963e^-4	1	DOWNSTREAM CR44893 INTERGENIC
2L	6182566	2L_6182566_DEL [dm3] 2L_6182566_DEL [dm6]	GA	T	1.965e^-4	1	INTRON CG34380	TF binding site mE1_TFBS_sens
X	5611769	X_5611769_SNP [dm3] X_5717736_SNP [dm6]	C	T	1.965e^-4	1	UTR_5_PRIME CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19940735	2L_19940735_SNP [dm3] 2L_19940735_SNP [dm6]	G	T	1.967e^-4	1	INTRON sick	TF binding site mE1_TFBS_sens
2L	19470074	2L_19470074_SNP [dm3] 2L_19470074_SNP [dm6]	G	A	1.967e^-4	1	DOWNSTREAM CR43839 & 1 other EXON CR45723
2R	9179324	2R_9179324_SNP [dm3] 2R_13291819_SNP [dm6]	G	T	1.976e^-4	1	INTRON Dh31-R
2R	9179335	2R_9179335_SNP [dm3] 2R_13291830_SNP [dm6]	G	C	1.988e^-4	1	INTRON Dh31-R
2L	16816621	2L_16816621_SNP [dm3] 2L_16816621_SNP [dm6]	G	C	1.999e^-4	1	UPSTREAM mdy DOWNSTREAM CG13272 INTRON CG13280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	11394455	3R_11394455_SNP [dm3] 3R_15568733_SNP [dm6]	T	G	2.005e^-4	1	INTERGENIC
3R	26051540	3R_26051540_DEL [dm3] 3R_30225818_DEL [dm6]	TAATAG	T	2.008e^-4	1	INTERGENIC
3R	15179279	3R_15179279_SNP [dm3] 3R_19353557_SNP [dm6]	C	T	2.008e^-4	1	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18739807	2R_18739807_SNP [dm3] 2R_22852284_SNP [dm6]	C	A	2.009e^-4	1	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_chinmo
3L	2943152	3L_2943152_SNP [dm3] 3L_2943152_SNP [dm6]	A	T	2.012e^-4	1	INTRON Shab
3L	1120650	3L_1120650_SNP [dm3] 3L_1120650_SNP [dm6]	A	G	2.028e^-4	1	INTERGENIC
2L	6244696	2L_6244696_SNP [dm3] 2L_6244696_SNP [dm6]	C	G	2.033e^-4	1	INTERGENIC
2L	14264961	2L_14264961_SNP [dm3] 2L_14264961_SNP [dm6]	T	C	2.034e^-4	1	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	15118336	2L_15118336_INS [dm3] 2L_15118336_INS [dm6]	C	CATACGGAGTAC...	2.054e^-4	1	DOWNSTREAM stc INTERGENIC
3R	12732764	3R_12732764_SNP [dm3] 3R_16907042_SNP [dm6]	C	A	2.063e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17599520	X_17599520_SNP [dm3] X_17705487_SNP [dm6]	C	A	2.070e^-4	1	UTR_3_PRIME par-6
3L	17578034	3L_17578034_SNP [dm3] 3L_17584934_SNP [dm6]	G	A	2.078e^-4	1	INTRON Eip74EF
2R	11154050	2R_11154050_SNP [dm3] 2R_15266545_SNP [dm6]	T	A	2.080e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
2L	9728638	2L_9728638_DEL [dm3] 2L_9728638_DEL [dm6]	ACTA	A	2.090e^-4	1	INTRON Nckx30C
3L	14833979	3L_14833979_SNP [dm3] 3L_14840879_SNP [dm6]	G	A	2.098e^-4	1	INTRON CG17839
X	8576231	X_8576231_SNP [dm3] X_8682198_SNP [dm6]	T	C	2.107e^-4	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14992711	2R_14992711_SNP [dm3] 2R_19105206_SNP [dm6]	C	G	2.109e^-4	1	INTRON 5-HT1A
2L	11145241	2L_11145241_SNP [dm3] 2L_11145241_SNP [dm6]	A	T	2.112e^-4	1	NON_SYNONYMOUS_CODING CG31867 INTRON Gyc32E
X	9869244	X_9869244_SNP [dm3] X_9975211_SNP [dm6]	C	T	2.117e^-4	1	INTRON CG43386
X	7938296	X_7938296_SNP [dm3] X_8044263_SNP [dm6]	T	A	2.129e^-4	1	INTRON fs_1_h
3L	14383348	3L_14383348_DEL [dm3] 3L_14390248_DEL [dm6]	TTTCGC	T	2.145e^-4	1	INTERGENIC
3R	10325344	3R_10325344_DEL [dm3] 3R_14499622_DEL [dm6]	TT	T	2.173e^-4	1	INTRON CR44177	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	5980877	3L_5980877_SNP [dm3] 3L_5987777_SNP [dm6]	C	T	2.180e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6877813	3L_6877813_SNP [dm3] 3L_6884713_SNP [dm6]	G	A	2.184e^-4	1	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	10454265	3L_10454265_SNP [dm3] 3L_10461165_SNP [dm6]	G	A	2.184e^-4	1	SYNONYMOUS_CODING Gem3
3L	10142244	3L_10142244_INS [dm3] 3L_10149144_INS [dm6]	C	CAGTTCCAGGAGCAGC...	2.187e^-4	1	UTR_3_PRIME dpr10
3R	10602565	3R_10602565_SNP [dm3] 3R_14776843_SNP [dm6]	C	T	2.189e^-4	1	INTRON jvl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5678133	2L_5678133_SNP [dm3] 2L_5678133_SNP [dm6]	A	G	2.192e^-4	1	UPSTREAM CG12511 INTERGENIC
3L	4177827	3L_4177827_SNP [dm3] 3L_4177827_SNP [dm6]	G	T	2.200e^-4	1	UTR_5_PRIME Teh4 INTRON CG18675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6424204	2R_6424204_SNP [dm3] 2R_10536699_SNP [dm6]	A	G	2.206e^-4	1	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9079501	X_9079501_SNP [dm3] X_9185468_SNP [dm6]	G	T	2.225e^-4	1	UTR_3_PRIME mei-P26
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	2.226e^-4	1	INTRON Mhc
3L	18956853	3L_18956853_SNP [dm3] 3L_18963753_SNP [dm6]	G	T	2.227e^-4	1	INTERGENIC
3L	15913413	3L_15913413_SNP [dm3] 3L_15920313_SNP [dm6]	C	G	2.238e^-4	1	INTRON sff	TF binding site mE1_TFBS_inv
2L	11483985	2L_11483985_SNP [dm3] 2L_11483985_SNP [dm6]	G	T	2.240e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
2R	9806577	2R_9806577_SNP [dm3] 2R_13919072_SNP [dm6]	C	T	2.248e^-4	1	INTRON shot	TF binding site mE1_TFBS_Trl
2L	18551618	2L_18551618_SNP [dm3] 2L_18551618_SNP [dm6]	A	G	2.263e^-4	1	INTRON Pde11
3L	1120634	3L_1120634_SNP [dm3] 3L_1120634_SNP [dm6]	A	T	2.267e^-4	1	INTERGENIC
3L	681703	3L_681703_SNP [dm3] 3L_681703_SNP [dm6]	C	T	2.270e^-4	1	SYNONYMOUS_CODING CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9962823	3R_9962823_SNP [dm3] 3R_14137101_SNP [dm6]	T	G	2.272e^-4	1	INTERGENIC
3L	15904768	3L_15904768_SNP [dm3] 3L_15911668_SNP [dm6]	A	G	2.273e^-4	1	INTRON sff
X	12028974	X_12028974_SNP [dm3] X_12134941_SNP [dm6]	A	G	2.275e^-4	1	INTRON Ten-a
X	4334096	X_4334096_SNP [dm3] X_4440063_SNP [dm6]	T	C	2.283e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	2937681	3L_2937681_SNP [dm3] 3L_2937681_SNP [dm6]	C	T	2.286e^-4	1	INTRON Shab
2R	19446456	2R_19446456_SNP [dm3] 2R_23558933_SNP [dm6]	G	A	2.287e^-4	1	NON_SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17598308	X_17598308_SNP [dm3] X_17704275_SNP [dm6]	T	C	2.324e^-4	1	INTRON par-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11394457	3R_11394457_INS [dm3] 3R_15568735_INS [dm6]	A	AGC	2.329e^-4	1	INTERGENIC
2R	17597817	2R_17597817_SNP [dm3] 2R_21710312_SNP [dm6]	T	C	2.333e^-4	1	NON_SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
3R	11394449	3R_11394449_SNP [dm3] 3R_15568727_SNP [dm6]	G	A	2.341e^-4	1	INTERGENIC
3L	13448675	3L_13448675_SNP [dm3] 3L_13455575_SNP [dm6]	A	T	2.344e^-4	1	DOWNSTREAM CG10116 INTRON CG10738
3L	13412807	3L_13412807_SNP [dm3] 3L_13419707_SNP [dm6]	C	A	2.344e^-4	1	INTRON CG32121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25335695	3R_25335695_SNP [dm3] 3R_29509973_SNP [dm6]	A	G	2.369e^-4	1	INTERGENIC
3R	8828852	3R_8828852_SNP [dm3] 3R_13003130_SNP [dm6]	G	A	2.370e^-4	1	SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_chinmo
2L	3233431	2L_3233431_SNP [dm3] 2L_3233431_SNP [dm6]	A	G	2.380e^-4	1	INTERGENIC
X	12451763	X_12451763_SNP [dm3] X_12557730_SNP [dm6]	T	A	2.380e^-4	1	INTRON CG43921
3R	10936313	3R_10936313_SNP [dm3] 3R_15110591_SNP [dm6]	G	A	2.390e^-4	1	INTRON CG42788
2R	9176287	2R_9176287_SNP [dm3] 2R_13288782_SNP [dm6]	A	C	2.391e^-4	1	INTRON Dh31-R
2L	17343293	2L_17343293_SNP [dm3] 2L_17343293_SNP [dm6]	G	T	2.400e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	14114457	X_14114457_SNP [dm3] X_14220424_SNP [dm6]	T	G	2.415e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10782569	X_10782569_SNP [dm3] X_10888536_SNP [dm6]	C	G	2.419e^-4	1	INTRON Ork1
3L	9971928	3L_9971928_SNP [dm3] 3L_9978828_SNP [dm6]	G	A	2.422e^-4	1	INTRON dpr6
X	17509186	X_17509186_SNP [dm3] X_17615153_SNP [dm6]	G	A	2.426e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13866990	X_13866990_SNP [dm3] X_13972957_SNP [dm6]	C	G	2.427e^-4	1	INTRON mamo
2L	2817825	2L_2817825_SNP [dm3] 2L_2817825_SNP [dm6]	G	A	2.431e^-4	1	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2851789	3L_2851789_SNP [dm3] 3L_2851789_SNP [dm6]	T	G	2.432e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17285884	3L_17285884_SNP [dm3] 3L_17292784_SNP [dm6]	T	G	2.432e^-4	1	INTERGENIC
2L	15090627	2L_15090627_SNP [dm3] 2L_15090627_SNP [dm6]	T	C	2.433e^-4	1	INTRON CG15270
2R	17268256	2R_17268256_SNP [dm3] 2R_21380751_SNP [dm6]	G	C	2.434e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	1120642	3L_1120642_SNP [dm3] 3L_1120642_SNP [dm6]	A	T	2.455e^-4	1	INTERGENIC
2L	14458402	2L_14458402_SNP [dm3] 2L_14458402_SNP [dm6]	G	A	2.473e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6424202	2R_6424202_SNP [dm3] 2R_10536697_SNP [dm6]	A	G	2.474e^-4	1	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9767687	2L_9767687_SNP [dm3] 2L_9767687_SNP [dm6]	C	T	2.486e^-4	1	SYNONYMOUS_CODING CG4017 INTRON ppk18	TF binding site mE1_TFBS_sens
3R	14905860	3R_14905860_SNP [dm3] 3R_19080138_SNP [dm6]	G	A	2.495e^-4	1	INTRON cdi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	21965195	X_21965195_SNP [dm3] X_22563359_SNP [dm6]	C	T	2.500e^-4	1	INTERGENIC
2R	14992287	2R_14992287_SNP [dm3] 2R_19104782_SNP [dm6]	G	A	2.500e^-4	1	INTRON 5-HT1A
3L	1419624	3L_1419624_SNP [dm3] 3L_1419624_SNP [dm6]	C	T	2.502e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11393451	3R_11393451_SNP [dm3] 3R_15567729_SNP [dm6]	A	G	2.506e^-4	1	INTERGENIC
2R	13459095	2R_13459095_SNP [dm3] 2R_17571590_SNP [dm6]	G	A	2.506e^-4	1	SYNONYMOUS_CODING POSH DOWNSTREAM CG14482
3L	3534199	3L_3534199_DEL [dm3] 3L_3534199_DEL [dm6]	AG	A	2.515e^-4	1	INTRON Eip63E
2R	10323575	2R_10323575_SNP [dm3] 2R_14436070_SNP [dm6]	G	T	2.516e^-4	1	UTR_5_PRIME Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3233453	2L_3233453_SNP [dm3] 2L_3233453_SNP [dm6]	C	A	2.519e^-4	1	INTERGENIC
2L	10815464	2L_10815464_SNP [dm3] 2L_10815464_SNP [dm6]	T	C	2.530e^-4	1	INTRON Nos
3R	14500073	3R_14500073_SNP [dm3] 3R_18674351_SNP [dm6]	G	A	2.536e^-4	1	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad
3L	1120644	3L_1120644_SNP [dm3] 3L_1120644_SNP [dm6]	A	T	2.539e^-4	1	INTERGENIC
3R	21793892	3R_21793892_SNP [dm3] 3R_25968170_SNP [dm6]	G	A	2.540e^-4	1	INTERGENIC
2L	7624844	2L_7624844_INS [dm3] 2L_7624844_INS [dm6]	T	TCTCGCTGCTCCTCGCTGCA...	2.546e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	12319691	3R_12319691_SNP [dm3] 3R_16493969_SNP [dm6]	A	C	2.546e^-4	1	INTRON Cad89D
3R	12319715	3R_12319715_SNP [dm3] 3R_16493993_SNP [dm6]	G	A	2.546e^-4	1	INTRON Cad89D
3L	763436	3L_763436_SNP [dm3] 3L_763436_SNP [dm6]	T	A	2.555e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	7263236	2L_7263236_SNP [dm3] 2L_7263236_SNP [dm6]	G	A	2.558e^-4	1	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12325265	X_12325265_SNP [dm3] X_12431232_SNP [dm6]	C	A	2.564e^-4	1	UPSTREAM Pkcdelta INTERGENIC
2R	7097008	2R_7097008_SNP [dm3] 2R_11209503_SNP [dm6]	T	C	2.569e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7382078	2L_7382078_SNP [dm3] 2L_7382078_SNP [dm6]	T	C	2.569e^-4	1	INTRON ninaC
X	13574879	X_13574879_SNP [dm3] X_13680846_SNP [dm6]	T	C	2.573e^-4	1	UPSTREAM CG12177 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18956963	3L_18956963_SNP [dm3] 3L_18963863_SNP [dm6]	A	T	2.584e^-4	1	INTERGENIC
2R	9176254	2R_9176254_SNP [dm3] 2R_13288749_SNP [dm6]	G	T	2.593e^-4	1	INTRON Dh31-R
2R	7099325	2R_7099325_SNP [dm3] 2R_11211820_SNP [dm6]	G	C	2.604e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12088966	2R_12088966_SNP [dm3] 2R_16201461_SNP [dm6]	C	A	2.610e^-4	1	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11715898	3L_11715898_SNP [dm3] 3L_11722798_SNP [dm6]	A	T	2.617e^-4	1	SYNONYMOUS_CODING Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7103260	2R_7103260_SNP [dm3] 2R_11215755_SNP [dm6]	A	G	2.619e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10892917	2L_10892917_SNP [dm3] 2L_10892917_SNP [dm6]	G	T	2.622e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	2792743	3L_2792743_SNP [dm3] 3L_2792743_SNP [dm6]	G	A	2.636e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11176926	2R_11176926_SNP [dm3] 2R_15289421_SNP [dm6]	G	C	2.644e^-4	1	INTRON Trpm
2L	8204485	2L_8204485_SNP [dm3] 2L_8204485_SNP [dm6]	C	T	2.645e^-4	1	DOWNSTREAM CR44120 INTRON CR44119 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12167836	X_12167836_SNP [dm3] X_12273803_SNP [dm6]	C	T	2.650e^-4	1	UPSTREAM CG45603 INTRON Ten-a
2L	17343287	2L_17343287_SNP [dm3] 2L_17343287_SNP [dm6]	G	A	2.652e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3267515	3R_3267515_SNP [dm3] 3R_7441793_SNP [dm6]	T	G	2.661e^-4	1	UTR_3_PRIME CG14598
2L	6492416	2L_6492416_SNP [dm3] 2L_6492416_SNP [dm6]	T	C	2.661e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
2R	11584731	2R_11584731_SNP [dm3] 2R_15697226_SNP [dm6]	A	G	2.670e^-4	1	NON_SYNONYMOUS_CODING CG33462 DOWNSTREAM CG33461	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12088845	2R_12088845_SNP [dm3] 2R_16201340_SNP [dm6]	T	C	2.705e^-4	1	NON_SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14500085	3R_14500085_SNP [dm3] 3R_18674363_SNP [dm6]	T	C	2.707e^-4	1	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad
X	17921566	X_17921566_SNP [dm3] X_18027533_SNP [dm6]	T	G	2.715e^-4	1	INTRON Sh & 1 other
X	17921569	X_17921569_SNP [dm3] X_18027536_SNP [dm6]	A	G	2.715e^-4	1	INTRON Sh & 1 other
2L	15416755	2L_15416755_SNP [dm3] 2L_15416755_SNP [dm6]	A	T	2.717e^-4	1	INTERGENIC
3L	4781752	3L_4781752_SNP [dm3] 3L_4781752_SNP [dm6]	C	G	2.747e^-4	1	INTRON RhoGEF64C
2L	10892918	2L_10892918_SNP [dm3] 2L_10892918_SNP [dm6]	C	T	2.754e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	9449806	X_9449806_SNP [dm3] X_9555773_SNP [dm6]	T	C	2.754e^-4	1	UTR_3_PRIME CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	8642746	3L_8642746_SNP [dm3] 3L_8649646_SNP [dm6]	C	A	2.755e^-4	1	SPLICE_SITE_REGION Pex7 UPSTREAM Arr2 INTRON Pex7	TF binding site mE1_TFBS_cad
X	12325222	X_12325222_SNP [dm3] X_12431189_SNP [dm6]	T	G	2.758e^-4	1	INTERGENIC
X	17599194	X_17599194_SNP [dm3] X_17705161_SNP [dm6]	A	G	2.758e^-4	1	SYNONYMOUS_CODING par-6	TF binding site mE1_TFBS_sens
X	12028972	X_12028972_SNP [dm3] X_12134939_SNP [dm6]	T	A	2.764e^-4	1	INTRON Ten-a
3R	11647842	3R_11647842_SNP [dm3] 3R_15822120_SNP [dm6]	C	G	2.782e^-4	1	DOWNSTREAM rec INTRON alpha-Man-IIb	TF binding site mE1_TFBS_cad
3L	16463423	3L_16463423_SNP [dm3] 3L_16470323_SNP [dm6]	G	A	2.793e^-4	1	DOWNSTREAM aos INTRON CG33158
2R	12089017	2R_12089017_DEL [dm3] 2R_16201512_DEL [dm6]	AA	A	2.802e^-4	1	SPLICE_SITE_REGION shark INTRON shark	TF binding site mE1_TFBS_chinmo
2R	7103161	2R_7103161_SNP [dm3] 2R_11215656_SNP [dm6]	G	C	2.805e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2586118	3R_2586118_DEL [dm3] 3R_6760396_DEL [dm6]	TT	T	2.805e^-4	1	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26036261	3R_26036261_SNP [dm3] 3R_30210539_SNP [dm6]	A	T	2.814e^-4	1	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3L	11552545	3L_11552545_SNP [dm3] 3L_11559445_SNP [dm6]	G	A	2.814e^-4	1	UPSTREAM Mob2 INTRON Mob2
2R	17995640	2R_17995640_SNP [dm3] 2R_22108135_SNP [dm6]	T	C	2.817e^-4	1	UTR_3_PRIME Vrp1 INTRON Vrp1
2L	3760913	2L_3760913_SNP [dm3] 2L_3760913_SNP [dm6]	G	C	2.819e^-4	1	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo
2L	5655062	2L_5655062_SNP [dm3] 2L_5655062_SNP [dm6]	G	C	2.819e^-4	1	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5655073	2L_5655073_SNP [dm3] 2L_5655073_SNP [dm6]	G	T	2.819e^-4	1	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4096225	3L_4096225_SNP [dm3] 3L_4096225_SNP [dm6]	T	C	2.824e^-4	1	INTRON CG14995	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15090945	3R_15090945_SNP [dm3] 3R_19265223_SNP [dm6]	T	C	2.833e^-4	1	INTERGENIC
2R	3839510	2R_3839510_SNP [dm3] 2R_7952005_SNP [dm6]	C	T	2.836e^-4	1	NON_SYNONYMOUS_CODING CG14764 DOWNSTREAM CG30378 INTRON CG14764
2R	7105210	2R_7105210_SNP [dm3] 2R_11217705_SNP [dm6]	A	G	2.892e^-4	1	DOWNSTREAM shn INTRON CG9084
2R	7105259	2R_7105259_SNP [dm3] 2R_11217754_SNP [dm6]	C	T	2.892e^-4	1	SPLICE_SITE_REGION CG9084 SYNONYMOUS_CODING CG9084 DOWNSTREAM shn
X	18476380	X_18476380_DEL [dm3] X_18582347_DEL [dm6]	AA	A	2.904e^-4	1	INTERGENIC
2L	3233537	2L_3233537_SNP [dm3] 2L_3233537_SNP [dm6]	T	C	2.923e^-4	1	INTERGENIC
X	8898462	X_8898462_SNP [dm3] X_9004429_SNP [dm6]	G	C	2.939e^-4	1	INTRON rdgA & 1 other
X	8898463	X_8898463_SNP [dm3] X_9004430_SNP [dm6]	G	T	2.939e^-4	1	INTRON rdgA & 1 other
X	16877763	X_16877763_SNP [dm3] X_16983730_SNP [dm6]	G	A	2.945e^-4	1	INTRON CG45002
2L	7624370	2L_7624370_SNP [dm3] 2L_7624370_SNP [dm6]	T	A	2.950e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7100687	2R_7100687_SNP [dm3] 2R_11213182_SNP [dm6]	T	G	2.962e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad
2R	7103176	2R_7103176_SNP [dm3] 2R_11215671_SNP [dm6]	T	C	2.962e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7103303	2R_7103303_SNP [dm3] 2R_11215798_SNP [dm6]	C	T	2.962e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7250033	2L_7250033_SNP [dm3] 2L_7250033_SNP [dm6]	G	T	2.964e^-4	1	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	21470095	3R_21470095_INS [dm3] 3R_25644373_INS [dm6]	T	TT	2.965e^-4	1	INTRON jigr1
2R	9179317	2R_9179317_SNP [dm3] 2R_13291812_SNP [dm6]	A	C	2.966e^-4	1	INTRON Dh31-R
X	19050977	X_19050977_SNP [dm3] X_19156944_SNP [dm6]	T	C	2.968e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2L	7624399	2L_7624399_DEL [dm3] 2L_7624399_DEL [dm6]	ATATTCTTTCGAGTGAAT...	A	2.992e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7624424	2L_7624424_SNP [dm3] 2L_7624424_SNP [dm6]	G	A	2.992e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18270319	3R_18270319_SNP [dm3] 3R_22444597_SNP [dm6]	T	A	2.995e^-4	1	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10488897	3L_10488897_SNP [dm3] 3L_10495797_SNP [dm6]	G	A	2.998e^-4	1	INTRON A2bp1
2R	7105012	2R_7105012_SNP [dm3] 2R_11217507_SNP [dm6]	G	A	3.008e^-4	1	DOWNSTREAM shn INTRON CG9084
2R	7105031	2R_7105031_SNP [dm3] 2R_11217526_SNP [dm6]	T	A	3.008e^-4	1	DOWNSTREAM shn INTRON CG9084
3L	17285906	3L_17285906_SNP [dm3] 3L_17292806_SNP [dm6]	A	T	3.016e^-4	1	INTERGENIC
2R	8430423	2R_8430423_SNP [dm3] 2R_12542918_SNP [dm6]	G	A	3.031e^-4	1	INTRON fra
2L	6492507	2L_6492507_SNP [dm3] 2L_6492507_SNP [dm6]	C	G	3.043e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	3.044e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2R	12951712	2R_12951712_SNP [dm3] 2R_17064207_SNP [dm6]	T	C	3.056e^-4	1	INTRON CG6967
2L	7624752	2L_7624752_SNP [dm3] 2L_7624752_SNP [dm6]	G	A	3.069e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6492493	2L_6492493_SNP [dm3] 2L_6492493_SNP [dm6]	A	T	3.082e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	19324779	2L_19324779_SNP [dm3] 2L_19324779_SNP [dm6]	G	A	3.083e^-4	1	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11393379	3R_11393379_SNP [dm3] 3R_15567657_SNP [dm6]	T	A	3.087e^-4	1	INTERGENIC
3R	14553378	3R_14553378_SNP [dm3] 3R_18727656_SNP [dm6]	G	A	3.096e^-4	1	UTR_3_PRIME CG7715 INTRON Cha	TF binding site mE1_TFBS_chinmo
3R	12732786	3R_12732786_SNP [dm3] 3R_16907064_SNP [dm6]	A	G	3.102e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6209004	2R_6209004_SNP [dm3] 2R_10321499_SNP [dm6]	T	A	3.105e^-4	1	SYNONYMOUS_CODING Ndg UPSTREAM CG34222 DOWNSTREAM CG42732
3R	14364864	3R_14364864_SNP [dm3] 3R_18539142_SNP [dm6]	A	G	3.108e^-4	1	INTRON fru
3L	6463109	3L_6463109_SNP [dm3] 3L_6470009_SNP [dm6]	A	G	3.108e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
2R	932855	2R_932855_SNP [dm3] 2R_5045350_SNP [dm6]	G	A	3.113e^-4	1	INTERGENIC	transposable element FlyBase
2L	11452049	2L_11452049_SNP [dm3] 2L_11452049_SNP [dm6]	C	A	3.120e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7105030	2R_7105030_SNP [dm3] 2R_11217525_SNP [dm6]	A	G	3.122e^-4	1	DOWNSTREAM shn INTRON CG9084
3L	14044163	3L_14044163_SNP [dm3] 3L_14051063_SNP [dm6]	T	A	3.126e^-4	1	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14044167	3L_14044167_SNP [dm3] 3L_14051067_SNP [dm6]	G	A	3.126e^-4	1	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14044173	3L_14044173_SNP [dm3] 3L_14051073_SNP [dm6]	T	A	3.126e^-4	1	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	10887369	2L_10887369_SNP [dm3] 2L_10887369_SNP [dm6]	G	A	3.127e^-4	1	DOWNSTREAM CG14071 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	3.130e^-4	1	INTERGENIC
3L	16212921	3L_16212921_SNP [dm3] 3L_16219821_SNP [dm6]	C	G	3.134e^-4	1	INTERGENIC
3L	9321108	3L_9321108_SNP [dm3] 3L_9328008_SNP [dm6]	G	C	3.138e^-4	1	INTERGENIC
2R	9179604	2R_9179604_SNP [dm3] 2R_13292099_SNP [dm6]	T	A	3.142e^-4	1	INTRON Dh31-R
X	15813500	X_15813500_SNP [dm3] X_15919467_SNP [dm6]	A	T	3.146e^-4	1	INTRON CG8909
3L	5468206	3L_5468206_SNP [dm3] 3L_5475106_SNP [dm6]	C	A	3.166e^-4	1	INTERGENIC
3R	12732724	3R_12732724_SNP [dm3] 3R_16907002_SNP [dm6]	C	T	3.167e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9649158	2L_9649158_SNP [dm3] 2L_9649158_SNP [dm6]	A	T	3.174e^-4	1	INTRON Apoltp
3L	17106424	3L_17106424_SNP [dm3] 3L_17113324_SNP [dm6]	A	G	3.186e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_cad
2L	16398370	2L_16398370_SNP [dm3] 2L_16398370_SNP [dm6]	G	C	3.196e^-4	1	INTERGENIC
X	19209624	X_19209624_SNP [dm3] X_19315591_SNP [dm6]	T	C	3.201e^-4	1	INTRON out	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17610046	2R_17610046_SNP [dm3] 2R_21722541_SNP [dm6]	T	C	3.205e^-4	1	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10892936	2L_10892936_SNP [dm3] 2L_10892936_SNP [dm6]	A	C	3.207e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	9440984	X_9440984_SNP [dm3] X_9546951_SNP [dm6]	T	A	3.215e^-4	1	INTRON CG32700
X	11199179	X_11199179_SNP [dm3] X_11305146_SNP [dm6]	G	A	3.217e^-4	1	INTERGENIC
3L	8642172	3L_8642172_SNP [dm3] 3L_8649072_SNP [dm6]	G	A	3.219e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
2R	9179591	2R_9179591_SNP [dm3] 2R_13292086_SNP [dm6]	C	T	3.221e^-4	1	INTRON Dh31-R
3R	23466076	3R_23466076_INS [dm3] 3R_27640354_INS [dm6]	C	CGC	3.230e^-4	1	DOWNSTREAM tau & 1 other INTRON tau
3L	1120666	3L_1120666_SNP [dm3] 3L_1120666_SNP [dm6]	A	C	3.237e^-4	1	INTERGENIC
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	3.239e^-4	1	INTRON VAChT & 1 other
2R	9806575	2R_9806575_SNP [dm3] 2R_13919070_SNP [dm6]	G	T	3.245e^-4	1	INTRON shot	TF binding site mE1_TFBS_Trl
3R	7349481	3R_7349481_SNP [dm3] 3R_11523759_SNP [dm6]	C	G	3.245e^-4	1	INTERGENIC
3R	14530149	3R_14530149_SNP [dm3] 3R_18704427_SNP [dm6]	A	G	3.252e^-4	1	INTERGENIC
3L	10143846	3L_10143846_DEL [dm3] 3L_10150746_DEL [dm6]	AA	A	3.254e^-4	1	DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
2L	17343337	2L_17343337_SNP [dm3] 2L_17343337_SNP [dm6]	A	G	3.264e^-4	1	INTERGENIC
3L	4788969	3L_4788969_SNP [dm3] 3L_4788969_SNP [dm6]	C	T	3.265e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2R	17136020	2R_17136020_SNP [dm3] 2R_21248515_SNP [dm6]	C	T	3.280e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9322313	3L_9322313_SNP [dm3] 3L_9329213_SNP [dm6]	G	A	3.280e^-4	1	INTERGENIC
2R	13832747	2R_13832747_SNP [dm3] 2R_17945242_SNP [dm6]	G	A	3.283e^-4	1	INTERGENIC
3R	14982992	3R_14982992_SNP [dm3] 3R_19157270_SNP [dm6]	T	A	3.290e^-4	1	UTR_5_PRIME nos UPSTREAM CG11779 INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	7090786	2L_7090786_SNP [dm3] 2L_7090786_SNP [dm6]	C	A	3.327e^-4	1	INTERGENIC
2L	6492473	2L_6492473_SNP [dm3] 2L_6492473_SNP [dm6]	T	A	3.334e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
X	20440198	X_20440198_SNP [dm3] X_20569171_SNP [dm6]	G	A	3.346e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7929909	2L_7929909_SNP [dm3] 2L_7929909_SNP [dm6]	T	A	3.353e^-4	1	INTRON Snoo
X	13514339	X_13514339_INS [dm3] X_13620306_INS [dm6]	G	GAAG	3.361e^-4	1	INTRON CG2691
3R	13593645	3R_13593645_SNP [dm3] 3R_17767923_SNP [dm6]	C	T	3.364e^-4	1	DOWNSTREAM CG43102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7962426	X_7962426_SNP [dm3] X_8068393_SNP [dm6]	G	T	3.367e^-4	1	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14073041	2L_14073041_SNP [dm3] 2L_14073041_SNP [dm6]	T	C	3.384e^-4	1	INTRON nAChRalpha5
2R	11886948	2R_11886948_SNP [dm3] 2R_15999443_SNP [dm6]	A	T	3.392e^-4	1	INTRON ATPCL
X	1424655	X_1424655_SNP [dm3] X_1530622_SNP [dm6]	C	G	3.395e^-4	1	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	14492531	2L_14492531_SNP [dm3] 2L_14492531_SNP [dm6]	A	T	3.398e^-4	1	SYNONYMOUS_CODING noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7104957	2R_7104957_SNP [dm3] 2R_11217452_SNP [dm6]	C	T	3.402e^-4	1	SYNONYMOUS_STOP CG9084 DOWNSTREAM shn
3L	13312409	3L_13312409_SNP [dm3] 3L_13319309_SNP [dm6]	A	T	3.408e^-4	1	INTERGENIC
2R	17644131	2R_17644131_SNP [dm3] 2R_21756626_SNP [dm6]	T	C	3.419e^-4	1	UPSTREAM Grx-1 INTERGENIC
2R	15103704	2R_15103704_SNP [dm3] 2R_19216199_SNP [dm6]	G	C	3.429e^-4	1	INTRON hppy
2R	14607671	2R_14607671_SNP [dm3] 2R_18720166_SNP [dm6]	G	T	3.435e^-4	1	UPSTREAM mir-4982 INTRON Hs3st-A	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	6183743	2L_6183743_SNP [dm3] 2L_6183743_SNP [dm6]	C	T	3.438e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	8577162	X_8577162_SNP [dm3] X_8683129_SNP [dm6]	G	A	3.442e^-4	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19470097	2L_19470097_SNP [dm3] 2L_19470097_SNP [dm6]	A	T	3.450e^-4	1	DOWNSTREAM CR43839 & 1 other EXON CR45723
2L	6492472	2L_6492472_SNP [dm3] 2L_6492472_SNP [dm6]	A	G	3.451e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3L	9978872	3L_9978872_SNP [dm3] 3L_9985772_SNP [dm6]	G	A	3.455e^-4	1	INTRON dpr6
2L	7624421	2L_7624421_SNP [dm3] 2L_7624421_SNP [dm6]	T	A	3.463e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26036013	3R_26036013_DEL [dm3] 3R_30210291_DEL [dm6]	CT	C	3.486e^-4	1	UTR_3_PRIME Anp UPSTREAM CecA1 DOWNSTREAM Anp	regulatory region REDfly_CRMs
2R	6012752	2R_6012752_SNP [dm3] 2R_10125247_SNP [dm6]	T	C	3.490e^-4	1	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4331841	X_4331841_SNP [dm3] X_4437808_SNP [dm6]	T	C	3.498e^-4	1	INTRON CR32773 & 1 other
X	12028989	X_12028989_SNP [dm3] X_12134956_SNP [dm6]	C	T	3.500e^-4	1	INTRON Ten-a
X	1392818	X_1392818_SNP [dm3] X_1498785_SNP [dm6]	C	T	3.505e^-4	1	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	11113494	3L_11113494_SNP [dm3] 3L_11120394_SNP [dm6]	G	A	3.513e^-4	1	UTR_5_PRIME fd68A UPSTREAM fd68A & 1 other INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13906985	2L_13906985_SNP [dm3] 2L_13906985_SNP [dm6]	C	T	3.514e^-4	1	SYNONYMOUS_CODING Ance
X	21965114	X_21965114_SNP [dm3] X_22563278_SNP [dm6]	A	C	3.515e^-4	1	INTERGENIC
3R	19429693	3R_19429693_SNP [dm3] 3R_23603971_SNP [dm6]	G	A	3.518e^-4	1	INTRON CG10184
X	5575305	X_5575305_SNP [dm3] X_5681272_SNP [dm6]	G	A	3.520e^-4	1	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
3R	25696014	3R_25696014_SNP [dm3] 3R_29870292_SNP [dm6]	G	C	3.523e^-4	1	INTRON CG34133
3L	11552503	3L_11552503_SNP [dm3] 3L_11559403_SNP [dm6]	T	G	3.528e^-4	1	UPSTREAM Mob2 INTRON Mob2
3L	17196177	3L_17196177_SNP [dm3] 3L_17203077_SNP [dm6]	A	G	3.535e^-4	1	INTRON Rbp6
3R	15763320	3R_15763320_SNP [dm3] 3R_19937598_SNP [dm6]	A	G	3.538e^-4	1	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
2L	6183695	2L_6183695_SNP [dm3] 2L_6183695_SNP [dm6]	C	T	3.542e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	12238431	X_12238431_SNP [dm3] X_12344398_SNP [dm6]	G	A	3.548e^-4	1	INTERGENIC
2L	795532	2L_795532_SNP [dm3] 2L_795532_SNP [dm6]	T	C	3.555e^-4	1	INTERGENIC
2L	10983789	2L_10983789_SNP [dm3] 2L_10983789_SNP [dm6]	C	T	3.572e^-4	1	INTRON piwi
3L	13267905	3L_13267905_SNP [dm3] 3L_13274805_SNP [dm6]	G	A	3.590e^-4	1	INTRON caps	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	14044168	3L_14044168_SNP [dm3] 3L_14051068_SNP [dm6]	A	T	3.596e^-4	1	UPSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2R	14118511	2R_14118511_SNP [dm3] 2R_18231006_SNP [dm6]	T	C	3.598e^-4	1	EXON CR45311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19844589	3R_19844589_SNP [dm3] 3R_24018867_SNP [dm6]	A	T	3.600e^-4	1	INTRON KrT95D
2R	17605275	2R_17605275_SNP [dm3] 2R_21717770_SNP [dm6]	G	A	3.622e^-4	1	UTR_5_PRIME Tango11 UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25753012	3R_25753012_SNP [dm3] 3R_29927290_SNP [dm6]	C	A	3.623e^-4	1	UTR_5_PRIME CG15522
3L	10488887	3L_10488887_SNP [dm3] 3L_10495787_SNP [dm6]	T	A	3.634e^-4	1	INTRON A2bp1
3L	10488900	3L_10488900_SNP [dm3] 3L_10495800_SNP [dm6]	A	G	3.634e^-4	1	INTRON A2bp1
2L	14952322	2L_14952322_SNP [dm3] 2L_14952322_SNP [dm6]	T	G	3.636e^-4	1	INTRON CG42313
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	3.641e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11765372	2L_11765372_SNP [dm3] 2L_11765372_SNP [dm6]	A	G	3.642e^-4	1	INTERGENIC
3R	25093602	3R_25093602_SNP [dm3] 3R_29267880_SNP [dm6]	G	A	3.657e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	3303571	2L_3303571_SNP [dm3] 2L_3303571_SNP [dm6]	G	C	3.658e^-4	1	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18615422	3R_18615422_SNP [dm3] 3R_22789700_SNP [dm6]	T	C	3.669e^-4	1	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7263807	X_7263807_SNP [dm3] X_7369774_SNP [dm6]	C	G	3.678e^-4	1	INTRON CG1677 & 1 other
3L	11552552	3L_11552552_SNP [dm3] 3L_11559452_SNP [dm6]	A	T	3.687e^-4	1	UPSTREAM Mob2 INTRON Mob2
2R	7602418	2R_7602418_SNP [dm3] 2R_11714913_SNP [dm6]	C	A	3.687e^-4	1	INTRON pyr
2L	9234883	2L_9234883_SNP [dm3] 2L_9234883_SNP [dm6]	G	A	3.690e^-4	1	INTRON tai	TF binding site mE1_TFBS_inv
3L	2793523	3L_2793523_SNP [dm3] 3L_2793523_SNP [dm6]	A	C	3.696e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1006677	2L_1006677_SNP [dm3] 2L_1006677_SNP [dm6]	G	T	3.698e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	3022618	3L_3022618_SNP [dm3] 3L_3022618_SNP [dm6]	C	G	3.698e^-4	1	INTERGENIC
3R	14071515	3R_14071515_SNP [dm3] 3R_18245793_SNP [dm6]	G	T	3.706e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18725979	2R_18725979_SNP [dm3] 2R_22838456_SNP [dm6]	G	T	3.711e^-4	1	NON_SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8232158	2L_8232158_SNP [dm3] 2L_8232158_SNP [dm6]	A	G	3.714e^-4	1	INTRON Pvr
X	7056634	X_7056634_SNP [dm3] X_7162601_SNP [dm6]	T	G	3.727e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	7056691	X_7056691_SNP [dm3] X_7162658_SNP [dm6]	A	G	3.727e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2R	17498806	2R_17498806_SNP [dm3] 2R_21611301_SNP [dm6]	C	G	3.732e^-4	1	INTRON CG15673
2L	7624836	2L_7624836_SNP [dm3] 2L_7624836_SNP [dm6]	A	G	3.733e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9775960	3L_9775960_SNP [dm3] 3L_9782860_SNP [dm6]	T	A	3.741e^-4	1	INTRON CG8177
2R	17611108	2R_17611108_SNP [dm3] 2R_21723603_SNP [dm6]	C	T	3.741e^-4	1	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad
X	7085515	X_7085515_SNP [dm3] X_7191482_SNP [dm6]	A	C	3.741e^-4	1	INTRON CG9650 & 1 other
X	8946805	X_8946805_SNP [dm3] X_9052772_SNP [dm6]	T	C	3.747e^-4	1	NON_SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6492483	2L_6492483_SNP [dm3] 2L_6492483_SNP [dm6]	G	A	3.760e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3R	12361267	3R_12361267_SNP [dm3] 3R_16535545_SNP [dm6]	A	T	3.776e^-4	1	INTRON CG42342
X	19350756	X_19350756_SNP [dm3] X_19456723_SNP [dm6]	G	T	3.792e^-4	1	INTRON kek5
2R	6792151	2R_6792151_SNP [dm3] 2R_10904646_SNP [dm6]	A	C	3.796e^-4	1	INTRON CG12943
2R	11075924	2R_11075924_SNP [dm3] 2R_15188419_SNP [dm6]	A	T	3.813e^-4	1	INTRON igl
3R	6984572	3R_6984572_SNP [dm3] 3R_11158850_SNP [dm6]	C	G	3.816e^-4	1	SYNONYMOUS_CODING Ugt86Da
3R	26051058	3R_26051058_SNP [dm3] 3R_30225336_SNP [dm6]	T	C	3.849e^-4	1	INTERGENIC
3R	7839752	3R_7839752_SNP [dm3] 3R_12014030_SNP [dm6]	G	A	3.857e^-4	1	NON_SYNONYMOUS_CODING GCC185 DOWNSTREAM CG3313	TF binding site mE1_TFBS_cad
2L	10884654	2L_10884654_SNP [dm3] 2L_10884654_SNP [dm6]	C	G	3.858e^-4	1	INTERGENIC
3L	4370214	3L_4370214_SNP [dm3] 3L_4370214_SNP [dm6]	G	A	3.858e^-4	1	INTRON DopEcR
3L	19163607	3L_19163607_DEL [dm3] 3L_19170507_DEL [dm6]	ATAAA	A	3.867e^-4	1	UTR_5_PRIME fz2 INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10892915	2L_10892915_SNP [dm3] 2L_10892915_SNP [dm6]	T	A	3.871e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	25849732	3R_25849732_SNP [dm3] 3R_30024010_SNP [dm6]	G	C	3.873e^-4	1	INTRON Axn
2L	10962306	2L_10962306_SNP [dm3] 2L_10962306_SNP [dm6]	A	T	3.873e^-4	1	INTRON dpr2
X	14027874	X_14027874_SNP [dm3] X_14133841_SNP [dm6]	G	A	3.875e^-4	1	INTERGENIC
3R	25335697	3R_25335697_SNP [dm3] 3R_29509975_SNP [dm6]	T	C	3.876e^-4	1	INTERGENIC
2L	14456068	2L_14456068_SNP [dm3] 2L_14456068_SNP [dm6]	T	G	3.880e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	14626614	2L_14626614_INS [dm3] 2L_14626614_INS [dm6]	C	CTC	3.886e^-4	1	INTRON osp
X	13062703	X_13062703_SNP [dm3] X_13168670_SNP [dm6]	A	G	3.891e^-4	1	INTRON CG34411
X	7056628	X_7056628_SNP [dm3] X_7162595_SNP [dm6]	G	T	3.908e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9992017	2L_9992017_SNP [dm3] 2L_9992017_SNP [dm6]	T	G	3.911e^-4	1	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	847170	2L_847170_SNP [dm3] 2L_847170_SNP [dm6]	A	T	3.919e^-4	1	INTRON drongo
2R	17270654	2R_17270654_SNP [dm3] 2R_21383149_SNP [dm6]	T	A	3.919e^-4	1	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3108519	X_3108519_SNP [dm3] X_3214486_SNP [dm6]	A	G	3.919e^-4	1	INTRON dnc
X	19017780	X_19017780_SNP [dm3] X_19123747_SNP [dm6]	G	A	3.927e^-4	1	DOWNSTREAM CG15882 INTERGENIC
3L	14833887	3L_14833887_SNP [dm3] 3L_14840787_SNP [dm6]	C	G	3.930e^-4	1	INTRON CG17839
X	10782812	X_10782812_SNP [dm3] X_10888779_SNP [dm6]	C	T	3.930e^-4	1	INTRON Ork1
3L	11747381	3L_11747381_DEL [dm3] 3L_11754281_DEL [dm6]	GGACACAG	G	3.946e^-4	1	INTRON CG6024
2R	14118527	2R_14118527_SNP [dm3] 2R_18231022_SNP [dm6]	G	T	3.947e^-4	1	EXON CR45311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12023490	3L_12023490_SNP [dm3] 3L_12030390_SNP [dm6]	C	T	3.961e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5080501	2L_5080501_SNP [dm3] 2L_5080501_SNP [dm6]	A	C	3.964e^-4	1	INTRON pgant5
2R	12637630	2R_12637630_SNP [dm3] 2R_16750125_SNP [dm6]	A	G	3.968e^-4	1	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
3R	6960639	3R_6960639_SNP [dm3] 3R_11134917_SNP [dm6]	C	T	3.973e^-4	1	INTERGENIC
2L	12885598	2L_12885598_SNP [dm3] 2L_12885598_SNP [dm6]	C	T	3.979e^-4	1	INTERGENIC
3R	7839819	3R_7839819_SNP [dm3] 3R_12014097_SNP [dm6]	T	C	3.985e^-4	1	SYNONYMOUS_CODING GCC185 DOWNSTREAM CG3313	TF binding site mE1_TFBS_cad
2R	13679598	2R_13679598_SNP [dm3] 2R_17792093_SNP [dm6]	C	T	3.987e^-4	1	SYNONYMOUS_CODING CG5033 UPSTREAM Dhit
2L	18932639	2L_18932639_SNP [dm3] 2L_18932639_SNP [dm6]	A	T	3.995e^-4	1	INTRON ssp3
3L	9963186	3L_9963186_SNP [dm3] 3L_9970086_SNP [dm6]	G	A	3.998e^-4	1	SYNONYMOUS_CODING Nc
X	4736835	X_4736835_SNP [dm3] X_4842802_SNP [dm6]	G	A	4.007e^-4	1	INTRON CG42594	TF binding site mE1_TFBS_inv
2R	5682207	2R_5682207_SNP [dm3] 2R_9794702_SNP [dm6]	T	A	4.008e^-4	1	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
3L	2939273	3L_2939273_INS [dm3] 3L_2939273_INS [dm6]	C	CC	4.010e^-4	1	INTRON Shab
2R	10950859	2R_10950859_SNP [dm3] 2R_15063354_SNP [dm6]	C	T	4.012e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	15217347	3L_15217347_SNP [dm3] 3L_15224247_SNP [dm6]	C	T	4.013e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	17018589	2R_17018589_SNP [dm3] 2R_21131084_SNP [dm6]	G	A	4.023e^-4	1	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
2R	16124756	2R_16124756_SNP [dm3] 2R_20237251_SNP [dm6]	G	A	4.033e^-4	1	INTRON CG11099
3R	15920143	3R_15920143_SNP [dm3] 3R_20094421_SNP [dm6]	G	C	4.033e^-4	1	INTERGENIC
3L	15949661	3L_15949661_SNP [dm3] 3L_15956561_SNP [dm6]	A	T	4.042e^-4	1	START_GAINED elgi UTR_5_PRIME elgi UPSTREAM elgi DOWNSTREAM GXIVsPLA2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12422515	3R_12422515_SNP [dm3] 3R_16596793_SNP [dm6]	T	G	4.047e^-4	1	DOWNSTREAM CG10345 INTRON CG14892	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3299867	2L_3299867_SNP [dm3] 2L_3299867_SNP [dm6]	G	C	4.050e^-4	1	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9406206	2L_9406206_SNP [dm3] 2L_9406206_SNP [dm6]	A	G	4.057e^-4	1	UTR_5_PRIME Shawl
2L	11323329	2L_11323329_SNP [dm3] 2L_11323329_SNP [dm6]	T	C	4.059e^-4	1	INTERGENIC
2R	12989452	2R_12989452_SNP [dm3] 2R_17101947_SNP [dm6]	C	T	4.060e^-4	1	INTRON CG30456
3L	5623533	3L_5623533_SNP [dm3] 3L_5630433_SNP [dm6]	A	T	4.064e^-4	1	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2793535	3L_2793535_SNP [dm3] 3L_2793535_SNP [dm6]	C	T	4.075e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17598344	2R_17598344_SNP [dm3] 2R_21710839_SNP [dm6]	C	T	4.085e^-4	1	INTRON HmgD & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16460649	3L_16460649_SNP [dm3] 3L_16467549_SNP [dm6]	C	T	4.087e^-4	1	INTRON CG33158
2R	4140221	2R_4140221_SNP [dm3] 2R_8252716_SNP [dm6]	A	G	4.105e^-4	1	INTERGENIC
3L	1419616	3L_1419616_SNP [dm3] 3L_1419616_SNP [dm6]	A	G	4.107e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13679463	2R_13679463_SNP [dm3] 2R_17791958_SNP [dm6]	G	A	4.112e^-4	1	SYNONYMOUS_CODING CG5033 UPSTREAM Dhit	TF binding site mE1_TFBS_sens
3R	14072310	3R_14072310_SNP [dm3] 3R_18246588_SNP [dm6]	T	A	4.113e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4418507	3L_4418507_SNP [dm3] 3L_4418507_SNP [dm6]	T	G	4.123e^-4	1	UPSTREAM DOR INTRON DOR
3R	23381133	3R_23381133_SNP [dm3] 3R_27555411_SNP [dm6]	A	C	4.127e^-4	1	SYNONYMOUS_CODING Klp98A
X	15566390	X_15566390_SNP [dm3] X_15672357_SNP [dm6]	A	G	4.128e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14138204	3L_14138204_SNP [dm3] 3L_14145104_SNP [dm6]	G	T	4.132e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	4787267	3L_4787267_DEL [dm3] 3L_4787267_DEL [dm6]	GGCTTGAGGG	A	4.133e^-4	1	INTRON RhoGEF64C
X	13519407	X_13519407_SNP [dm3] X_13625374_SNP [dm6]	G	A	4.136e^-4	1	UTR_5_PRIME NFAT UPSTREAM CG2691	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12633875	2R_12633875_SNP [dm3] 2R_16746370_SNP [dm6]	A	G	4.147e^-4	1	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad
2L	16473414	2L_16473414_SNP [dm3] 2L_16473414_SNP [dm6]	G	C	4.148e^-4	1	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3R	12732754	3R_12732754_DEL [dm3] 3R_16907032_DEL [dm6]	GCTGA	G	4.154e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1867049	2L_1867049_SNP [dm3] 2L_1867049_SNP [dm6]	T	A	4.172e^-4	1	SYNONYMOUS_CODING CG31663	TF binding site mE1_TFBS_HSA
2L	3304659	2L_3304659_INS [dm3] 2L_3304659_INS [dm6]	A	AA	4.195e^-4	1	UTR_5_PRIME CG3277
2R	11154052	2R_11154052_SNP [dm3] 2R_15266547_SNP [dm6]	A	T	4.197e^-4	1	UTR_3_PRIME Trpm INTRON Trpm
3R	25742029	3R_25742029_SNP [dm3] 3R_29916307_SNP [dm6]	G	C	4.200e^-4	1	INTRON trp
2L	14453941	2L_14453941_SNP [dm3] 2L_14453941_SNP [dm6]	A	C	4.245e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1688663	3L_1688663_SNP [dm3] 3L_1688663_SNP [dm6]	T	C	4.249e^-4	1	UPSTREAM CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
3R	14688395	3R_14688395_SNP [dm3] 3R_18862673_SNP [dm6]	G	A	4.250e^-4	1	INTERGENIC
2R	14992536	2R_14992536_SNP [dm3] 2R_19105031_SNP [dm6]	G	A	4.252e^-4	1	INTRON 5-HT1A
3L	12404859	3L_12404859_SNP [dm3] 3L_12411759_SNP [dm6]	T	A	4.255e^-4	1	INTRON CG32103
3R	14532233	3R_14532233_SNP [dm3] 3R_18706511_SNP [dm6]	G	A	4.257e^-4	1	INTRON VAChT & 1 other
2L	12378596	2L_12378596_SNP [dm3] 2L_12378596_SNP [dm6]	A	T	4.277e^-4	1	INTRON bru-2
2R	13679493	2R_13679493_SNP [dm3] 2R_17791988_SNP [dm6]	C	G	4.279e^-4	1	SYNONYMOUS_CODING CG5033 UPSTREAM Dhit	TF binding site mE1_TFBS_sens
3L	17477340	3L_17477340_SNP [dm3] 3L_17484240_SNP [dm6]	A	G	4.285e^-4	1	INTRON CG6333
3L	4133180	3L_4133180_SNP [dm3] 3L_4133180_SNP [dm6]	G	A	4.289e^-4	1	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25639589	3R_25639589_SNP [dm3] 3R_29813867_SNP [dm6]	T	C	4.302e^-4	1	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	8695115	2L_8695115_SNP [dm3] 2L_8695115_SNP [dm6]	G	C	4.304e^-4	1	INTRON Hnf4
2R	14783045	2R_14783045_SNP [dm3] 2R_18895540_SNP [dm6]	C	G	4.323e^-4	1	INTRON sano
X	20682318	X_20682318_SNP [dm3] X_20811291_SNP [dm6]	A	C	4.352e^-4	1	INTRON shakB
2L	19181868	2L_19181868_SNP [dm3] 2L_19181868_SNP [dm6]	C	G	4.355e^-4	1	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5939422	2L_5939422_SNP [dm3] 2L_5939422_SNP [dm6]	C	T	4.360e^-4	1	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
2L	14412051	2L_14412051_SNP [dm3] 2L_14412051_SNP [dm6]	C	T	4.369e^-4	1	INTERGENIC
2L	799154	2L_799154_SNP [dm3] 2L_799154_SNP [dm6]	G	T	4.372e^-4	1	UPSTREAM CR45259 INTERGENIC
X	9235757	X_9235757_SNP [dm3] X_9341724_SNP [dm6]	G	T	4.411e^-4	1	INTRON CG34449
3R	1696880	3R_1696880_SNP [dm3] 3R_5871158_SNP [dm6]	G	A	4.436e^-4	1	INTRON CG34113
2L	3584771	2L_3584771_SNP [dm3] 2L_3584771_SNP [dm6]	G	A	4.442e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1322085	2R_1322085_SNP [dm3] 2R_5434580_SNP [dm6]	G	A	4.444e^-4	1	INTRON laccase2
2L	18432161	2L_18432161_SNP [dm3] 2L_18432161_SNP [dm6]	G	T	4.446e^-4	1	INTERGENIC
3R	21470269	3R_21470269_DEL [dm3] 3R_25644547_DEL [dm6]	TGCCTC	T	4.447e^-4	1	INTRON jigr1
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	4.449e^-4	1	INTRON rg & 1 other
2L	6493889	2L_6493889_DEL [dm3] 2L_6493889_DEL [dm6]	AAA	A	4.464e^-4	1	INTRON CG31638 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3021984	2L_3021984_SNP [dm3] 2L_3021984_SNP [dm6]	C	A	4.464e^-4	1	SYNONYMOUS_CODING alpha4GT1 DOWNSTREAM CG17264
3L	14383301	3L_14383301_SNP [dm3] 3L_14390201_SNP [dm6]	G	T	4.466e^-4	1	INTERGENIC
3L	14681486	3L_14681486_SNP [dm3] 3L_14688386_SNP [dm6]	T	C	4.466e^-4	1	INTRON ome
X	19050966	X_19050966_SNP [dm3] X_19156933_SNP [dm6]	C	T	4.480e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	9196662	3L_9196662_SNP [dm3] 3L_9203562_SNP [dm6]	G	A	4.483e^-4	1	INTRON Slc45-1
3L	10488953	3L_10488953_SNP [dm3] 3L_10495853_SNP [dm6]	T	C	4.484e^-4	1	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14455605	3R_14455605_SNP [dm3] 3R_18629883_SNP [dm6]	G	A	4.494e^-4	1	SYNONYMOUS_CODING CG14301 INTRON qin
3L	10488937	3L_10488937_SNP [dm3] 3L_10495837_SNP [dm6]	T	C	4.503e^-4	1	INTRON A2bp1	TF binding site mE1_TFBS_HSA
3L	22955526	3L_22955526_SNP [dm3] 3L_22962426_SNP [dm6]	G	T	4.514e^-4	1	DOWNSTREAM CR45758 INTERGENIC
2L	11699641	2L_11699641_SNP [dm3] 2L_11699641_SNP [dm6]	T	C	4.552e^-4	1	INTERGENIC
2L	9706636	2L_9706636_SNP [dm3] 2L_9706636_SNP [dm6]	A	G	4.557e^-4	1	SPLICE_SITE_REGION pelo UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3896159	2R_3896159_SNP [dm3] 2R_8008654_SNP [dm6]	A	T	4.559e^-4	1	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
2R	17136015	2R_17136015_SNP [dm3] 2R_21248510_SNP [dm6]	A	T	4.578e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9343465	2L_9343465_SNP [dm3] 2L_9343465_SNP [dm6]	T	C	4.583e^-4	1	SYNONYMOUS_CODING CG3748
X	12453019	X_12453019_SNP [dm3] X_12558986_SNP [dm6]	C	G	4.596e^-4	1	INTRON CG43921
3R	18614504	3R_18614504_SNP [dm3] 3R_22788782_SNP [dm6]	G	A	4.615e^-4	1	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6492478	2L_6492478_SNP [dm3] 2L_6492478_SNP [dm6]	A	G	4.621e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3L	9979985	3L_9979985_SNP [dm3] 3L_9986885_SNP [dm6]	A	G	4.623e^-4	1	INTRON dpr6
3L	14383338	3L_14383338_DEL [dm3] 3L_14390238_DEL [dm6]	CCATTAC	T	4.629e^-4	1	INTERGENIC
3R	26051601	3R_26051601_SNP [dm3] 3R_30225879_SNP [dm6]	A	G	4.635e^-4	1	INTERGENIC
X	14114550	X_14114550_SNP [dm3] X_14220517_SNP [dm6]	T	A	4.649e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
2L	9764709	2L_9764709_SNP [dm3] 2L_9764709_SNP [dm6]	T	G	4.650e^-4	1	DOWNSTREAM ppk18 INTRON und	TF binding site mE1_TFBS_cad
X	9235700	X_9235700_SNP [dm3] X_9341667_SNP [dm6]	C	T	4.652e^-4	1	INTRON CG34449
2L	7381925	2L_7381925_SNP [dm3] 2L_7381925_SNP [dm6]	G	A	4.662e^-4	1	INTRON ninaC
2L	7624383	2L_7624383_SNP [dm3] 2L_7624383_SNP [dm6]	G	C	4.670e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8835413	3L_8835413_SNP [dm3] 3L_8842313_SNP [dm6]	G	A	4.676e^-4	1	INTRON dally
3L	10457744	3L_10457744_DEL [dm3] 3L_10464644_DEL [dm6]	AAAGTGAT	A	4.677e^-4	1	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTERGENIC
3L	1294411	3L_1294411_SNP [dm3] 3L_1294411_SNP [dm6]	T	A	4.683e^-4	1	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
2L	3300215	2L_3300215_SNP [dm3] 2L_3300215_SNP [dm6]	C	T	4.688e^-4	1	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14383267	3L_14383267_SNP [dm3] 3L_14390167_SNP [dm6]	A	C	4.699e^-4	1	INTERGENIC
2L	786885	2L_786885_SNP [dm3] 2L_786885_SNP [dm6]	G	A	4.706e^-4	1	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10884692	2L_10884692_SNP [dm3] 2L_10884692_SNP [dm6]	C	A	4.709e^-4	1	INTERGENIC
3L	4209992	3L_4209992_SNP [dm3] 3L_4209992_SNP [dm6]	G	A	4.713e^-4	1	UPSTREAM Cpr64Aa DOWNSTREAM Cpr64Ab INTRON CG43367
2R	7116263	2R_7116263_SNP [dm3] 2R_11228758_SNP [dm6]	C	T	4.715e^-4	1	INTRON metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	4372290	2L_4372290_SNP [dm3] 2L_4372290_SNP [dm6]	C	A	4.716e^-4	1	SYNONYMOUS_CODING Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8689615	2R_8689615_SNP [dm3] 2R_12802110_SNP [dm6]	G	C	4.720e^-4	1	DOWNSTREAM sca INTERGENIC
2R	17561868	2R_17561868_SNP [dm3] 2R_21674363_SNP [dm6]	A	C	4.729e^-4	1	UPSTREAM CG30263 INTERGENIC
3L	19170792	3L_19170792_SNP [dm3] 3L_19177692_SNP [dm6]	C	T	4.746e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10323801	2R_10323801_SNP [dm3] 2R_14436296_SNP [dm6]	C	G	4.751e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	4.753e^-4	1	INTRON Eip63F-1
3L	15504035	3L_15504035_SNP [dm3] 3L_15510935_SNP [dm6]	G	A	4.759e^-4	1	UTR_3_PRIME gdl UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13832712	2R_13832712_SNP [dm3] 2R_17945207_SNP [dm6]	G	A	4.763e^-4	1	INTERGENIC
3L	4028384	3L_4028384_SNP [dm3] 3L_4028384_SNP [dm6]	A	G	4.797e^-4	1	UPSTREAM Gr64b & 1 other INTRON Gr64a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5654985	2L_5654985_DEL [dm3] 2L_5654985_DEL [dm6]	TATGCTACTT	T	4.816e^-4	1	INTRON CG31646	TF binding site mE1_TFBS_inv
X	17419169	X_17419169_SNP [dm3] X_17525136_SNP [dm6]	C	A	4.819e^-4	1	INTRON CG43658
2L	830888	2L_830888_SNP [dm3] 2L_830888_SNP [dm6]	G	A	4.823e^-4	1	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad
2R	9179326	2R_9179326_DEL [dm3] 2R_13291821_DEL [dm6]	AATATA	A	4.844e^-4	1	INTRON Dh31-R
2R	20092620	2R_20092620_SNP [dm3] 2R_24205097_SNP [dm6]	G	A	4.844e^-4	1	UTR_3_PRIME CG11406 INTRON CG11406
3R	9711194	3R_9711194_SNP [dm3] 3R_13885472_SNP [dm6]	T	A	4.860e^-4	1	INTERGENIC
3R	9711210	3R_9711210_MNP [dm3] 3R_13885488_MNP [dm6]	AAA	CCG	4.860e^-4	1	INTERGENIC
2R	5693745	2R_5693745_SNP [dm3] 2R_9806240_SNP [dm6]	G	C	4.865e^-4	1	INTRON CG1688
2L	3303596	2L_3303596_SNP [dm3] 2L_3303596_SNP [dm6]	A	G	4.873e^-4	1	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	22854881	3L_22854881_SNP [dm3] 3L_22861781_SNP [dm6]	G	C	4.900e^-4	1	DOWNSTREAM CG13239 INTERGENIC
3R	8866832	3R_8866832_SNP [dm3] 3R_13041110_SNP [dm6]	G	T	4.906e^-4	1	UPSTREAM CG11670 DOWNSTREAM CG11668 INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8642944	3L_8642944_SNP [dm3] 3L_8649844_SNP [dm6]	C	T	4.914e^-4	1	NON_SYNONYMOUS_CODING Pex7 UPSTREAM Arr2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17879662	2R_17879662_INS [dm3] 2R_21992157_INS [dm6]	C	CC	4.917e^-4	1	INTRON CG34370
3L	10680859	3L_10680859_SNP [dm3] 3L_10687759_SNP [dm6]	A	C	4.921e^-4	1	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10488928	3L_10488928_SNP [dm3] 3L_10495828_SNP [dm6]	G	T	4.921e^-4	1	INTRON A2bp1	TF binding site mE1_TFBS_HSA
X	14029098	X_14029098_SNP [dm3] X_14135065_SNP [dm6]	A	G	4.936e^-4	1	INTERGENIC
3L	18626816	3L_18626816_SNP [dm3] 3L_18633716_SNP [dm6]	A	G	4.937e^-4	1	INTRON MYPT-75D
3L	9963835	3L_9963835_SNP [dm3] 3L_9970735_SNP [dm6]	T	G	4.940e^-4	1	NON_SYNONYMOUS_CODING Nc DOWNSTREAM CG6674
2L	7623436	2L_7623436_SNP [dm3] 2L_7623436_SNP [dm6]	T	A	4.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12451776	X_12451776_DEL [dm3] X_12557743_DEL [dm6]	TC	T	4.948e^-4	1	INTRON CG43921
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	4.971e^-4	1	INTERGENIC
2R	3896162	2R_3896162_SNP [dm3] 2R_8008657_SNP [dm6]	G	A	4.992e^-4	1	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
X	10347018	X_10347018_SNP [dm3] X_10452985_SNP [dm6]	A	G	4.992e^-4	1	UPSTREAM CG32683 INTRON CG32683
2R	17815177	2R_17815177_SNP [dm3] 2R_21927672_SNP [dm6]	A	G	4.995e^-4	1	INTRON Fili
2R	1202444	2R_1202444_SNP [dm3] 2R_5314939_SNP [dm6]	C	G	4.996e^-4	1	INTRON sxc	transposable element FlyBase
2L	3588080	2L_3588080_SNP [dm3] 2L_3588080_SNP [dm6]	G	T	5.000e^-4	1	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17607327	X_17607327_SNP [dm3] X_17713294_SNP [dm6]	T	C	5.008e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14383289	3L_14383289_SNP [dm3] 3L_14390189_SNP [dm6]	G	T	5.010e^-4	1	INTERGENIC
2L	18219571	2L_18219571_SNP [dm3] 2L_18219571_SNP [dm6]	A	G	5.018e^-4	1	INTRON CG42750
3R	7129821	3R_7129821_SNP [dm3] 3R_11304099_SNP [dm6]	C	T	5.025e^-4	1	INTRON CR31386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18930219	3L_18930219_SNP [dm3] 3L_18937119_SNP [dm6]	C	G	5.032e^-4	1	INTRON CG32204
X	8100646	X_8100646_SNP [dm3] X_8206613_SNP [dm6]	A	C	5.039e^-4	1	INTRON sdt
3R	12073500	3R_12073500_SNP [dm3] 3R_16247778_SNP [dm6]	G	T	5.050e^-4	1	INTRON tara	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
X	9079491	X_9079491_INS [dm3] X_9185458_INS [dm6]	T	TTTTGTTT	5.058e^-4	1	UTR_3_PRIME mei-P26
2L	6489970	2L_6489970_SNP [dm3] 2L_6489970_SNP [dm6]	G	T	5.072e^-4	1	SYNONYMOUS_CODING epsilonCOP DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6492244	2L_6492244_SNP [dm3] 2L_6492244_SNP [dm6]	T	A	5.080e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
X	8106842	X_8106842_SNP [dm3] X_8212809_SNP [dm6]	A	G	5.082e^-4	1	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco
2L	10048602	2L_10048602_SNP [dm3] 2L_10048602_SNP [dm6]	C	T	5.086e^-4	1	UPSTREAM CG33301 INTERGENIC
X	11657056	X_11657056_DEL [dm3] X_11763023_DEL [dm6]	TTAC	T	5.087e^-4	1	DOWNSTREAM CG9360 INTRON m
3L	14083849	3L_14083849_SNP [dm3] 3L_14090749_SNP [dm6]	G	C	5.088e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5582386	3L_5582386_SNP [dm3] 3L_5589286_SNP [dm6]	C	T	5.093e^-4	1	SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
2L	7628118	2L_7628118_SNP [dm3] 2L_7628118_SNP [dm6]	C	A	5.115e^-4	1	INTERGENIC
2L	14433943	2L_14433943_SNP [dm3] 2L_14433943_SNP [dm6]	G	T	5.117e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	2598206	3R_2598206_SNP [dm3] 3R_6772484_SNP [dm6]	T	A	5.117e^-4	1	INTRON CR42721
3L	22960028	3L_22960028_SNP [dm3] 3L_22966928_SNP [dm6]	C	A	5.129e^-4	1	INTERGENIC
X	8747241	X_8747241_SNP [dm3] X_8853208_SNP [dm6]	G	A	5.143e^-4	1	UPSTREAM CG12075 INTRON CG12075
2L	5654940	2L_5654940_SNP [dm3] 2L_5654940_SNP [dm6]	C	G	5.146e^-4	1	INTRON CG31646	TF binding site mE1_TFBS_inv
X	10782867	X_10782867_DEL [dm3] X_10888834_DEL [dm6]	GTATTAAA	G	5.161e^-4	1	INTRON Ork1
3L	11398777	3L_11398777_SNP [dm3] 3L_11405677_SNP [dm6]	A	C	5.166e^-4	1	EXON CR44363	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14412038	2L_14412038_SNP [dm3] 2L_14412038_SNP [dm6]	C	A	5.173e^-4	1	INTERGENIC
2R	4290983	2R_4290983_SNP [dm3] 2R_8403478_SNP [dm6]	C	G	5.180e^-4	1	INTRON CG2121
2R	4290992	2R_4290992_SNP [dm3] 2R_8403487_SNP [dm6]	T	A	5.180e^-4	1	INTRON CG2121
2R	4290994	2R_4290994_SNP [dm3] 2R_8403489_SNP [dm6]	G	A	5.180e^-4	1	INTRON CG2121
X	19050971	X_19050971_SNP [dm3] X_19156938_SNP [dm6]	G	A	5.187e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
X	4861892	X_4861892_SNP [dm3] X_4967859_SNP [dm6]	G	A	5.190e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20117805	X_20117805_SNP [dm3] X_20246731_SNP [dm6]	C	A	5.190e^-4	1	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	5.200e^-4	1	INTRON klar
3L	12873834	3L_12873834_SNP [dm3] 3L_12880734_SNP [dm6]	C	G	5.203e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	7434902	X_7434902_SNP [dm3] X_7540869_SNP [dm6]	T	A	5.221e^-4	1	INTRON CG32719
2L	4953537	2L_4953537_SNP [dm3] 2L_4953537_SNP [dm6]	C	A	5.225e^-4	1	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
2L	14433944	2L_14433944_SNP [dm3] 2L_14433944_SNP [dm6]	G	A	5.229e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	14383255	3L_14383255_INS [dm3] 3L_14390155_INS [dm6]	A	AAAGA	5.240e^-4	1	INTERGENIC
2R	11812484	2R_11812484_SNP [dm3] 2R_15924979_SNP [dm6]	A	G	5.252e^-4	1	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2R	13904699	2R_13904699_SNP [dm3] 2R_18017194_SNP [dm6]	G	T	5.253e^-4	1	INTERGENIC
3L	11111440	3L_11111440_SNP [dm3] 3L_11118340_SNP [dm6]	A	T	5.271e^-4	1	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	22954144	3L_22954144_SNP [dm3] 3L_22961044_SNP [dm6]	A	T	5.272e^-4	1	EXON CR45758	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5476506	2L_5476506_DEL [dm3] 2L_5476506_DEL [dm6]	AT	A	5.275e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	14253986	3L_14253986_SNP [dm3] 3L_14260886_SNP [dm6]	G	C	5.277e^-4	1	INTERGENIC
3L	13445897	3L_13445897_SNP [dm3] 3L_13452797_SNP [dm6]	G	T	5.279e^-4	1	INTRON CG10738
X	5741678	X_5741678_SNP [dm3] X_5847645_SNP [dm6]	A	G	5.283e^-4	1	INTERGENIC
X	16898546	X_16898546_SNP [dm3] X_17004513_SNP [dm6]	T	C	5.286e^-4	1	INTRON CG45002
3L	9976916	3L_9976916_SNP [dm3] 3L_9983816_SNP [dm6]	T	G	5.286e^-4	1	INTRON dpr6
2R	11891619	2R_11891619_SNP [dm3] 2R_16004114_SNP [dm6]	T	C	5.292e^-4	1	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15086619	X_15086619_DEL [dm3] X_15192586_DEL [dm6]	AGATACATCTCGA...	A	5.305e^-4	1	INTERGENIC
2R	7105035	2R_7105035_SNP [dm3] 2R_11217530_SNP [dm6]	A	C	5.313e^-4	1	DOWNSTREAM shn INTRON CG9084
2L	14502786	2L_14502786_SNP [dm3] 2L_14502786_SNP [dm6]	A	G	5.319e^-4	1	INTERGENIC
2L	8399403	2L_8399403_SNP [dm3] 2L_8399403_SNP [dm6]	T	C	5.323e^-4	1	INTRON CG13386
3R	14071628	3R_14071628_SNP [dm3] 3R_18245906_SNP [dm6]	A	G	5.325e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6244697	2L_6244697_SNP [dm3] 2L_6244697_SNP [dm6]	T	A	5.325e^-4	1	INTERGENIC
3L	15904769	3L_15904769_SNP [dm3] 3L_15911669_SNP [dm6]	T	A	5.338e^-4	1	INTRON sff
2R	5681890	2R_5681890_SNP [dm3] 2R_9794385_SNP [dm6]	G	A	5.344e^-4	1	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
3L	2778628	3L_2778628_SNP [dm3] 3L_2778628_SNP [dm6]	C	T	5.353e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4598026	3L_4598026_SNP [dm3] 3L_4598026_SNP [dm6]	T	C	5.354e^-4	1	INTRON Src64B
3R	14049473	3R_14049473_SNP [dm3] 3R_18223751_SNP [dm6]	C	A	5.354e^-4	1	UTR_5_PRIME CG7993 UPSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	20681417	X_20681417_SNP [dm3] X_20810390_SNP [dm6]	G	A	5.355e^-4	1	INTRON shakB
3L	9133885	3L_9133885_SNP [dm3] 3L_9140785_SNP [dm6]	T	C	5.358e^-4	1	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7429169	2L_7429169_SNP [dm3] 2L_7429169_SNP [dm6]	G	A	5.366e^-4	1	SPLICE_SITE_REGION CG5261 SYNONYMOUS_CODING CG5261
3L	1525904	3L_1525904_SNP [dm3] 3L_1525904_SNP [dm6]	A	G	5.369e^-4	1	INTRON CG12090
2L	3273931	2L_3273931_SNP [dm3] 2L_3273931_SNP [dm6]	T	C	5.372e^-4	1	INTERGENIC
3R	14688291	3R_14688291_SNP [dm3] 3R_18862569_SNP [dm6]	G	A	5.379e^-4	1	INTERGENIC
2L	793842	2L_793842_SNP [dm3] 2L_793842_SNP [dm6]	C	T	5.382e^-4	1	INTERGENIC
2L	3300190	2L_3300190_SNP [dm3] 2L_3300190_SNP [dm6]	C	T	5.389e^-4	1	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2180929	3L_2180929_INS [dm3] 3L_2180929_INS [dm6]	T	TATGCTGAAAGCTCT...	5.392e^-4	1	INTERGENIC
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	5.403e^-4	1	INTRON CG5888
2L	6492273	2L_6492273_SNP [dm3] 2L_6492273_SNP [dm6]	C	T	5.405e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
3R	4287865	3R_4287865_SNP [dm3] 3R_8462143_SNP [dm6]	C	T	5.434e^-4	1	INTRON CG45263
3L	10454574	3L_10454574_DEL [dm3] 3L_10461474_DEL [dm6]	TAAG	T	5.436e^-4	1	CODON_DELETION Gem3
3L	12006421	3L_12006421_DEL [dm3] 3L_12013321_DEL [dm6]	TGGT	T	5.438e^-4	1	CODON_DELETION rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2586867	3L_2586867_SNP [dm3] 3L_2586867_SNP [dm6]	T	C	5.443e^-4	1	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13909825	2R_13909825_SNP [dm3] 2R_18022320_SNP [dm6]	T	A	5.448e^-4	1	UTR_3_PRIME CG10910	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1294380	3L_1294380_SNP [dm3] 3L_1294380_SNP [dm6]	G	A	5.455e^-4	1	UTR_3_PRIME CG32333
2L	554225	2L_554225_SNP [dm3] 2L_554225_SNP [dm6]	T	A	5.474e^-4	1	SYNONYMOUS_CODING rempA
2L	1902480	2L_1902480_SNP [dm3] 2L_1902480_SNP [dm6]	C	A	5.478e^-4	1	INTRON CG7337
2L	17343335	2L_17343335_SNP [dm3] 2L_17343335_SNP [dm6]	A	C	5.483e^-4	1	INTERGENIC
X	17547218	X_17547218_SNP [dm3] X_17653185_SNP [dm6]	C	T	5.485e^-4	1	SYNONYMOUS_CODING IntS2 UPSTREAM RhoGAPp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	7506757	2L_7506757_SNP [dm3] 2L_7506757_SNP [dm6]	A	G	5.488e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	12422161	X_12422161_SNP [dm3] X_12528128_SNP [dm6]	T	C	5.489e^-4	1	INTRON CG43921
3L	22955366	3L_22955366_SNP [dm3] 3L_22962266_SNP [dm6]	G	C	5.494e^-4	1	DOWNSTREAM CR45758 INTERGENIC
2L	6099067	2L_6099067_SNP [dm3] 2L_6099067_SNP [dm6]	G	C	5.496e^-4	1	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17465798	2R_17465798_SNP [dm3] 2R_21578293_SNP [dm6]	A	C	5.503e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15500275	X_15500275_SNP [dm3] X_15606242_SNP [dm6]	G	A	5.507e^-4	1	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20036563	2L_20036563_SNP [dm3] 2L_20036563_SNP [dm6]	T	C	5.512e^-4	1	INTRON sNPF
2R	7101928	2R_7101928_SNP [dm3] 2R_11214423_SNP [dm6]	G	T	5.518e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad
3R	15920174	3R_15920174_SNP [dm3] 3R_20094452_SNP [dm6]	G	A	5.519e^-4	1	INTERGENIC
2R	20136788	2R_20136788_SNP [dm3] 2R_24249265_SNP [dm6]	A	G	5.533e^-4	1	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8737858	3L_8737858_SNP [dm3] 3L_8744758_SNP [dm6]	C	A	5.561e^-4	1	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19501329	2R_19501329_SNP [dm3] 2R_23613806_SNP [dm6]	T	G	5.564e^-4	1	INTRON CG17664 & 1 other
2L	7727259	2L_7727259_SNP [dm3] 2L_7727259_SNP [dm6]	A	T	5.573e^-4	1	UTR_3_PRIME CG13796 UPSTREAM CG13795
3L	18626796	3L_18626796_SNP [dm3] 3L_18633696_SNP [dm6]	A	C	5.575e^-4	1	INTRON MYPT-75D
2R	15830147	2R_15830147_SNP [dm3] 2R_19942642_SNP [dm6]	T	C	5.586e^-4	1	INTERGENIC
2L	4084360	2L_4084360_SNP [dm3] 2L_4084360_SNP [dm6]	T	C	5.617e^-4	1	INTRON ed
2R	13431118	2R_13431118_SNP [dm3] 2R_17543613_SNP [dm6]	T	C	5.618e^-4	1	UPSTREAM CG34194 INTRON CG43370
3R	12664320	3R_12664320_SNP [dm3] 3R_16838598_SNP [dm6]	C	A	5.619e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17878704	2R_17878704_SNP [dm3] 2R_21991199_SNP [dm6]	G	A	5.649e^-4	1	INTRON CG34370
X	12167857	X_12167857_SNP [dm3] X_12273824_SNP [dm6]	C	T	5.657e^-4	1	UPSTREAM CG45603 INTRON Ten-a
2L	15090638	2L_15090638_SNP [dm3] 2L_15090638_SNP [dm6]	A	G	5.662e^-4	1	INTRON CG15270
2L	12930632	2L_12930632_INS [dm3] 2L_12930632_INS [dm6]	A	ACAATTGTA	5.663e^-4	1	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3L	3907783	3L_3907783_DEL [dm3] 3L_3907783_DEL [dm6]	TT	T	5.666e^-4	1	UTR_3_PRIME ida DOWNSTREAM mge
2R	7106419	2R_7106419_SNP [dm3] 2R_11218914_SNP [dm6]	T	C	5.673e^-4	1	START_GAINED CG9084 UTR_5_PRIME CG9084 UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	6244666	2L_6244666_SNP [dm3] 2L_6244666_SNP [dm6]	T	A	5.690e^-4	1	INTERGENIC
X	3655341	X_3655341_SNP [dm3] X_3761308_SNP [dm6]	G	T	5.700e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5424899	2L_5424899_SNP [dm3] 2L_5424899_SNP [dm6]	G	A	5.709e^-4	1	INTERGENIC
3R	19453883	3R_19453883_INS [dm3] 3R_23628161_INS [dm6]	T	AGATG	5.713e^-4	1	INTRON CG31145
2L	3050309	2L_3050309_SNP [dm3] 2L_3050309_SNP [dm6]	C	T	5.722e^-4	1	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4248790	3L_4248790_SNP [dm3] 3L_4248790_SNP [dm6]	A	G	5.726e^-4	1	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8408266	3L_8408266_SNP [dm3] 3L_8415166_SNP [dm6]	A	C	5.748e^-4	1	SYNONYMOUS_CODING Exo70 DOWNSTREAM CG32354
2L	11612236	2L_11612236_SNP [dm3] 2L_11612236_SNP [dm6]	C	T	5.756e^-4	1	UPSTREAM spag4 INTRON kek2
2R	4416203	2R_4416203_SNP [dm3] 2R_8528698_SNP [dm6]	A	T	5.757e^-4	1	INTRON mtt
3L	14043903	3L_14043903_SNP [dm3] 3L_14050803_SNP [dm6]	G	A	5.764e^-4	1	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens
X	12421861	X_12421861_SNP [dm3] X_12527828_SNP [dm6]	A	G	5.781e^-4	1	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
X	7937369	X_7937369_SNP [dm3] X_8043336_SNP [dm6]	A	G	5.781e^-4	1	SYNONYMOUS_CODING fs_1_h	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2912715	3L_2912715_SNP [dm3] 3L_2912715_SNP [dm6]	A	G	5.783e^-4	1	INTRON Shab
3L	16238024	3L_16238024_SNP [dm3] 3L_16244924_SNP [dm6]	G	A	5.786e^-4	1	INTERGENIC
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	5.790e^-4	1	INTRON CG5888
2R	14003700	2R_14003700_SNP [dm3] 2R_18116195_SNP [dm6]	C	A	5.793e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15996729	2L_15996729_SNP [dm3] 2L_15996729_SNP [dm6]	A	T	5.802e^-4	1	INTERGENIC
X	5588213	X_5588213_SNP [dm3] X_5694180_SNP [dm6]	A	G	5.809e^-4	1	SYNONYMOUS_CODING CG3149	TF binding site mE1_TFBS_chinmo
X	8810505	X_8810505_SNP [dm3] X_8916472_SNP [dm6]	T	A	5.811e^-4	1	INTRON rdgA
3L	13350032	3L_13350032_SNP [dm3] 3L_13356932_SNP [dm6]	T	C	5.817e^-4	1	INTRON Nplp2
3L	9384259	3L_9384259_SNP [dm3] 3L_9391159_SNP [dm6]	A	T	5.817e^-4	1	INTRON CG4080	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14525909	2R_14525909_SNP [dm3] 2R_18638404_SNP [dm6]	T	G	5.821e^-4	1	NON_SYNONYMOUS_CODING CG30122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14364881	3R_14364881_SNP [dm3] 3R_18539159_SNP [dm6]	T	C	5.827e^-4	1	INTRON fru
3R	6501168	3R_6501168_SNP [dm3] 3R_10675446_SNP [dm6]	G	C	5.835e^-4	1	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	13609108	3R_13609108_DEL [dm3] 3R_17783386_DEL [dm6]	GATGTTGCTGCTG...	G	5.838e^-4	1	CODON_DELETION CG43102 UPSTREAM CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17679485	2R_17679485_SNP [dm3] 2R_21791980_SNP [dm6]	G	T	5.847e^-4	1	UPSTREAM lox2 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	1408526	2R_1408526_SNP [dm3] 2R_5521021_SNP [dm6]	A	G	5.849e^-4	1	INTRON CG30438
3L	7800240	3L_7800240_SNP [dm3] 3L_7807140_SNP [dm6]	G	A	5.850e^-4	1	INTRON CG32369
3L	16980313	3L_16980313_SNP [dm3] 3L_16987213_SNP [dm6]	C	T	5.864e^-4	1	INTRON Exn
3R	19844606	3R_19844606_SNP [dm3] 3R_24018884_SNP [dm6]	C	G	5.866e^-4	1	INTRON KrT95D
2L	1494607	2L_1494607_SNP [dm3] 2L_1494607_SNP [dm6]	C	T	5.868e^-4	1	SYNONYMOUS_CODING CG33128 UPSTREAM CG31926 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12416575	2L_12416575_SNP [dm3] 2L_12416575_SNP [dm6]	G	A	5.881e^-4	1	INTRON vir-1
2L	14483317	2L_14483317_SNP [dm3] 2L_14483317_SNP [dm6]	G	A	5.885e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	22033007	X_22033007_SNP [dm3] X_22631171_SNP [dm6]	C	T	5.885e^-4	1	INTRON Cda4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3781757	3L_3781757_SNP [dm3] 3L_3781757_SNP [dm6]	C	A	5.887e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8731731	2R_8731731_SNP [dm3] 2R_12844226_SNP [dm6]	C	T	5.889e^-4	1	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14971816	3R_14971816_SNP [dm3] 3R_19146094_SNP [dm6]	G	C	5.899e^-4	1	INTRON Ppcs
2L	14657534	2L_14657534_SNP [dm3] 2L_14657534_SNP [dm6]	T	G	5.907e^-4	1	INTRON osp	TF binding site mE1_TFBS_inv
2R	17644149	2R_17644149_SNP [dm3] 2R_21756644_SNP [dm6]	G	A	5.911e^-4	1	UPSTREAM Grx-1 INTERGENIC
2R	18369300	2R_18369300_SNP [dm3] 2R_22481795_SNP [dm6]	G	A	5.918e^-4	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14071679	3R_14071679_SNP [dm3] 3R_18245957_SNP [dm6]	A	G	5.926e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3781771	3L_3781771_SNP [dm3] 3L_3781771_SNP [dm6]	C	A	5.934e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5044787	3L_5044787_DEL [dm3] 3L_5044787_DEL [dm6]	ATCTACTTGGGGTA...	A	5.941e^-4	1	INTRON Con
2L	8231571	2L_8231571_SNP [dm3] 2L_8231571_SNP [dm6]	G	A	5.942e^-4	1	UPSTREAM Pvr INTRON Pvr
X	12451759	X_12451759_SNP [dm3] X_12557726_SNP [dm6]	T	G	5.942e^-4	1	INTRON CG43921
3R	2626031	3R_2626031_SNP [dm3] 3R_6800309_SNP [dm6]	G	A	5.947e^-4	1	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
2L	5824974	2L_5824974_SNP [dm3] 2L_5824974_SNP [dm6]	A	C	5.955e^-4	1	UTR_5_PRIME TrissinR
X	16898582	X_16898582_SNP [dm3] X_17004549_SNP [dm6]	T	C	5.961e^-4	1	INTRON CG45002
3L	11233077	3L_11233077_SNP [dm3] 3L_11239977_SNP [dm6]	A	G	5.965e^-4	1	INTERGENIC
2L	7926491	2L_7926491_SNP [dm3] 2L_7926491_SNP [dm6]	C	G	5.977e^-4	1	INTRON Snoo
2R	17463881	2R_17463881_SNP [dm3] 2R_21576376_SNP [dm6]	G	C	5.977e^-4	1	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14072251	3R_14072251_SNP [dm3] 3R_18246529_SNP [dm6]	T	G	5.996e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10892958	2L_10892958_SNP [dm3] 2L_10892958_SNP [dm6]	G	T	5.996e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17878675	2R_17878675_SNP [dm3] 2R_21991170_SNP [dm6]	C	T	5.999e^-4	1	INTRON CG34370
2L	12994340	2L_12994340_SNP [dm3] 2L_12994340_SNP [dm6]	G	T	6.008e^-4	1	INTRON CG12404
X	5344330	X_5344330_INS [dm3] X_5450297_INS [dm6]	C	GA	6.016e^-4	1	INTRON SPR
2L	20824538	2L_20824538_SNP [dm3] 2L_20824538_SNP [dm6]	A	T	6.023e^-4	1	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4330611	X_4330611_SNP [dm3] X_4436578_SNP [dm6]	G	T	6.028e^-4	1	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4784332	3L_4784332_SNP [dm3] 3L_4784332_SNP [dm6]	G	A	6.028e^-4	1	INTRON RhoGEF64C
3L	11729636	3L_11729636_DEL [dm3] 3L_11736536_DEL [dm6]	TA	C	6.029e^-4	1	UTR_3_PRIME CG6024
2R	16981196	2R_16981196_SNP [dm3] 2R_21093691_SNP [dm6]	T	A	6.045e^-4	1	SPLICE_SITE_REGION CG34396 INTRON CG34396
3L	7859160	3L_7859160_SNP [dm3] 3L_7866060_SNP [dm6]	G	A	6.054e^-4	1	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	18357037	2R_18357037_SNP [dm3] 2R_22469532_SNP [dm6]	T	C	6.083e^-4	1	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18509254	2L_18509254_SNP [dm3] 2L_18509254_SNP [dm6]	T	C	6.087e^-4	1	UPSTREAM CG10178 INTERGENIC
2L	12632916	2L_12632916_SNP [dm3] 2L_12632916_SNP [dm6]	C	T	6.090e^-4	1	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	10667238	2R_10667238_SNP [dm3] 2R_14779733_SNP [dm6]	G	A	6.095e^-4	1	INTRON kn	TF binding site BDTNP1_TFBS_z
3L	3782592	3L_3782592_SNP [dm3] 3L_3782592_SNP [dm6]	T	A	6.105e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9322340	3L_9322340_SNP [dm3] 3L_9329240_SNP [dm6]	G	T	6.106e^-4	1	INTERGENIC
3L	13819267	3L_13819267_SNP [dm3] 3L_13826167_SNP [dm6]	G	A	6.120e^-4	1	INTERGENIC
3R	13567339	3R_13567339_DEL [dm3] 3R_17741617_DEL [dm6]	TT	T	6.126e^-4	1	INTRON TyrRII
2L	14641846	2L_14641846_SNP [dm3] 2L_14641846_SNP [dm6]	A	G	6.126e^-4	1	INTRON osp
2R	18038152	2R_18038152_SNP [dm3] 2R_22150647_SNP [dm6]	G	A	6.139e^-4	1	INTRON a
3L	12034194	3L_12034194_SNP [dm3] 3L_12041094_SNP [dm6]	A	C	6.141e^-4	1	INTRON rols
3L	5803340	3L_5803340_SNP [dm3] 3L_5810240_SNP [dm6]	G	T	6.148e^-4	1	UPSTREAM CG5537 INTRON S6k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	19324776	2L_19324776_SNP [dm3] 2L_19324776_SNP [dm6]	G	T	6.174e^-4	1	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7005710	X_7005710_SNP [dm3] X_7111677_SNP [dm6]	C	T	6.174e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6182205	2L_6182205_SNP [dm3] 2L_6182205_SNP [dm6]	A	C	6.190e^-4	1	INTRON CG34380	TF binding site mE1_TFBS_sens
2L	6492272	2L_6492272_SNP [dm3] 2L_6492272_SNP [dm6]	G	A	6.198e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
2L	7627477	2L_7627477_SNP [dm3] 2L_7627477_SNP [dm6]	A	G	6.202e^-4	1	INTERGENIC
3R	14535946	3R_14535946_SNP [dm3] 3R_18710224_SNP [dm6]	T	C	6.203e^-4	1	INTRON VAChT & 1 other
3R	22685162	3R_22685162_SNP [dm3] 3R_26859440_SNP [dm6]	T	C	6.205e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	6.226e^-4	1	INTRON Mhc
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	6.226e^-4	1	INTRON Mhc
2L	11312927	2L_11312927_SNP [dm3] 2L_11312927_SNP [dm6]	C	T	6.227e^-4	1	INTERGENIC
2R	4448237	2R_4448237_DEL [dm3] 2R_8560732_DEL [dm6]	TT	T	6.233e^-4	1	INTERGENIC
2L	14652942	2L_14652942_SNP [dm3] 2L_14652942_SNP [dm6]	G	C	6.235e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18615038	3R_18615038_SNP [dm3] 3R_22789316_SNP [dm6]	C	A	6.238e^-4	1	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2944293	3L_2944293_SNP [dm3] 3L_2944293_SNP [dm6]	T	A	6.243e^-4	1	UTR_3_PRIME Shab INTRON Shab
3R	14688292	3R_14688292_SNP [dm3] 3R_18862570_SNP [dm6]	A	T	6.250e^-4	1	INTERGENIC
2L	12923960	2L_12923960_SNP [dm3] 2L_12923960_SNP [dm6]	T	C	6.251e^-4	1	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	11121198	3L_11121198_SNP [dm3] 3L_11128098_SNP [dm6]	T	A	6.252e^-4	1	INTRON CG42575
2L	9767916	2L_9767916_SNP [dm3] 2L_9767916_SNP [dm6]	C	T	6.266e^-4	1	NON_SYNONYMOUS_CODING CG4017 INTRON ppk18
2L	4630412	2L_4630412_SNP [dm3] 2L_4630412_SNP [dm6]	A	C	6.267e^-4	1	INTERGENIC
2L	426698	2L_426698_SNP [dm3] 2L_426698_SNP [dm6]	G	A	6.270e^-4	1	INTERGENIC
2R	17891813	2R_17891813_SNP [dm3] 2R_22004308_SNP [dm6]	G	T	6.274e^-4	1	INTRON CG34370
X	7229142	X_7229142_SNP [dm3] X_7335109_SNP [dm6]	T	C	6.276e^-4	1	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3781830	3L_3781830_SNP [dm3] 3L_3781830_SNP [dm6]	G	A	6.277e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1294381	3L_1294381_SNP [dm3] 3L_1294381_SNP [dm6]	A	T	6.277e^-4	1	UTR_3_PRIME CG32333
3R	13835738	3R_13835738_SNP [dm3] 3R_18010016_SNP [dm6]	G	A	6.282e^-4	1	NON_SYNONYMOUS_CODING cpo	TF binding site BDTNP1_TFBS_da
X	11799839	X_11799839_SNP [dm3] X_11905806_SNP [dm6]	C	T	6.299e^-4	1	UPSTREAM Upf1 DOWNSTREAM CG43156 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9952497	3L_9952497_SNP [dm3] 3L_9959397_SNP [dm6]	G	A	6.304e^-4	1	INTRON CG34356
3L	14383288	3L_14383288_SNP [dm3] 3L_14390188_SNP [dm6]	A	T	6.308e^-4	1	INTERGENIC
X	8791485	X_8791485_SNP [dm3] X_8897452_SNP [dm6]	T	A	6.313e^-4	1	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3584884	2L_3584884_SNP [dm3] 2L_3584884_SNP [dm6]	T	C	6.315e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12452665	X_12452665_SNP [dm3] X_12558632_SNP [dm6]	T	C	6.330e^-4	1	INTRON CG43921
X	10309115	X_10309115_INS [dm3] X_10415082_INS [dm6]	T	TCTC	6.346e^-4	1	INTRON CG32683
3R	14072054	3R_14072054_SNP [dm3] 3R_18246332_SNP [dm6]	G	A	6.347e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2942297	3L_2942297_INS [dm3] 3L_2942297_INS [dm6]	C	CT	6.351e^-4	1	INTRON Shab
2R	19558948	2R_19558948_SNP [dm3] 2R_23671425_SNP [dm6]	T	G	6.367e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_HSA
2R	17271563	2R_17271563_SNP [dm3] 2R_21384058_SNP [dm6]	G	C	6.380e^-4	1	SYNONYMOUS_CODING CG10795 DOWNSTREAM EfSec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18565462	2R_18565462_SNP [dm3] 2R_22677957_SNP [dm6]	T	G	6.386e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7841429	2L_7841429_SNP [dm3] 2L_7841429_SNP [dm6]	C	T	6.405e^-4	1	DOWNSTREAM CG14537 INTERGENIC
2R	9179374	2R_9179374_DEL [dm3] 2R_13291869_DEL [dm6]	AAGTATAAA	A	6.412e^-4	1	INTRON Dh31-R
3L	10375916	3L_10375916_SNP [dm3] 3L_10382816_SNP [dm6]	G	A	6.414e^-4	1	INTERGENIC
3L	11747400	3L_11747400_DEL [dm3] 3L_11754300_DEL [dm6]	TAT	T	6.415e^-4	1	INTRON CG6024
3R	2580702	3R_2580702_SNP [dm3] 3R_6754980_SNP [dm6]	A	T	6.420e^-4	1	UPSTREAM zen DOWNSTREAM bcd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10493065	X_10493065_SNP [dm3] X_10599032_SNP [dm6]	C	T	6.431e^-4	1	UTR_3_PRIME CG2124 INTRON CG1628
2R	8559521	2R_8559521_SNP [dm3] 2R_12672016_SNP [dm6]	T	C	6.438e^-4	1	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20025488	2L_20025488_SNP [dm3] 2L_20025488_SNP [dm6]	C	T	6.458e^-4	1	SYNONYMOUS_CODING CG10659
2L	6492242	2L_6492242_SNP [dm3] 2L_6492242_SNP [dm6]	T	A	6.480e^-4	1	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3L	1120667	3L_1120667_SNP [dm3] 3L_1120667_SNP [dm6]	A	C	6.489e^-4	1	INTERGENIC
3R	24824525	3R_24824525_SNP [dm3] 3R_28998803_SNP [dm6]	A	T	6.495e^-4	1	INTRON wat
2R	12952834	2R_12952834_SNP [dm3] 2R_17065329_SNP [dm6]	C	T	6.497e^-4	1	SYNONYMOUS_CODING CG6967 DOWNSTREAM CG30460	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5790147	X_5790147_SNP [dm3] X_5896114_SNP [dm6]	G	C	6.520e^-4	1	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5790156	X_5790156_SNP [dm3] X_5896123_SNP [dm6]	C	T	6.520e^-4	1	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5136175	3L_5136175_SNP [dm3] 3L_5143075_SNP [dm6]	T	G	6.523e^-4	1	SPLICE_SITE_REGION CG4623 SYNONYMOUS_CODING CG4623
3L	10762222	3L_10762222_INS [dm3] 3L_10769122_INS [dm6]	T	TGT	6.524e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10683296	3R_10683296_SNP [dm3] 3R_14857574_SNP [dm6]	G	T	6.528e^-4	1	INTRON btsz
2R	9181269	2R_9181269_SNP [dm3] 2R_13293764_SNP [dm6]	C	T	6.535e^-4	1	INTRON Dh31-R
3L	5493801	3L_5493801_SNP [dm3] 3L_5500701_SNP [dm6]	G	C	6.538e^-4	1	DOWNSTREAM CR44518 & 1 other INTERGENIC
2L	12926521	2L_12926521_SNP [dm3] 2L_12926521_SNP [dm6]	A	G	6.539e^-4	1	SYNONYMOUS_CODING ACXE
2L	19965593	2L_19965593_SNP [dm3] 2L_19965593_SNP [dm6]	T	C	6.547e^-4	1	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
3L	4032190	3L_4032190_SNP [dm3] 3L_4032190_SNP [dm6]	G	C	6.566e^-4	1	SPLICE_SITE_REGION Gr64d UTR_5_PRIME Gr64d & 1 other DOWNSTREAM Gr64b & 1 other INTRON Gr64d
2L	4232101	2L_4232101_DEL [dm3] 2L_4232101_DEL [dm6]	AATATTAA	T	6.567e^-4	1	INTERGENIC
2L	4232224	2L_4232224_SNP [dm3] 2L_4232224_SNP [dm6]	G	A	6.567e^-4	1	INTERGENIC
2L	4232569	2L_4232569_SNP [dm3] 2L_4232569_SNP [dm6]	G	A	6.567e^-4	1	INTERGENIC
2L	4232159	2L_4232159_SNP [dm3] 2L_4232159_SNP [dm6]	T	A	6.569e^-4	1	INTERGENIC
2L	11047670	2L_11047670_SNP [dm3] 2L_11047670_SNP [dm6]	G	A	6.589e^-4	1	INTRON Samuel
3L	16238003	3L_16238003_SNP [dm3] 3L_16244903_SNP [dm6]	A	T	6.594e^-4	1	INTERGENIC
X	14775879	X_14775879_SNP [dm3] X_14881846_SNP [dm6]	C	T	6.594e^-4	1	INTRON Flo2 & 2 others	TF binding site mE1_TFBS_HSA
3L	8875458	3L_8875458_SNP [dm3] 3L_8882358_SNP [dm6]	A	T	6.602e^-4	1	INTRON dally
2R	12633725	2R_12633725_SNP [dm3] 2R_16746220_SNP [dm6]	C	G	6.622e^-4	1	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8553159	2R_8553159_SNP [dm3] 2R_12665654_SNP [dm6]	C	A	6.627e^-4	1	UTR_5_PRIME nemy INTRON nemy	TF binding site mE1_TFBS_bab1
3L	8314979	3L_8314979_SNP [dm3] 3L_8321879_SNP [dm6]	T	C	6.639e^-4	1	SYNONYMOUS_CODING CG13670
3L	15057135	3L_15057135_SNP [dm3] 3L_15064035_SNP [dm6]	C	T	6.641e^-4	1	INTRON Sytbeta	TF binding site mE1_TFBS_inv
X	5262357	X_5262357_SNP [dm3] X_5368324_SNP [dm6]	A	G	6.678e^-4	1	INTRON SK
2L	545652	2L_545652_SNP [dm3] 2L_545652_SNP [dm6]	C	G	6.679e^-4	1	UTR_3_PRIME Ets21C UPSTREAM Spp INTRON nAChRbeta3	TF binding site mE1_TFBS_cad
3L	18303628	3L_18303628_SNP [dm3] 3L_18310528_SNP [dm6]	A	T	6.685e^-4	1	INTERGENIC
3L	6460216	3L_6460216_SNP [dm3] 3L_6467116_SNP [dm6]	C	G	6.686e^-4	1	INTRON CG42747	TF binding site mE1_TFBS_cad
2R	16800781	2R_16800781_SNP [dm3] 2R_20913276_SNP [dm6]	C	T	6.688e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14974022	2R_14974022_SNP [dm3] 2R_19086517_SNP [dm6]	G	A	6.698e^-4	1	INTRON 5-HT1A
3L	9970356	3L_9970356_SNP [dm3] 3L_9977256_SNP [dm6]	T	A	6.698e^-4	1	INTRON dpr6
3R	10687985	3R_10687985_SNP [dm3] 3R_14862263_SNP [dm6]	C	T	6.721e^-4	1	INTRON btsz
3R	25136890	3R_25136890_SNP [dm3] 3R_29311168_SNP [dm6]	A	C	6.726e^-4	1	INTERGENIC
3L	9960972	3L_9960972_SNP [dm3] 3L_9967872_SNP [dm6]	T	C	6.740e^-4	1	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	9971418	3L_9971418_SNP [dm3] 3L_9978318_SNP [dm6]	G	T	6.745e^-4	1	INTRON dpr6
3L	9971571	3L_9971571_SNP [dm3] 3L_9978471_SNP [dm6]	C	A	6.745e^-4	1	INTRON dpr6
2R	18936819	2R_18936819_SNP [dm3] 2R_23049296_SNP [dm6]	G	A	6.750e^-4	1	DOWNSTREAM twi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25639532	3R_25639532_SNP [dm3] 3R_29813810_SNP [dm6]	T	G	6.751e^-4	1	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7267756	2L_7267756_SNP [dm3] 2L_7267756_SNP [dm6]	T	A	6.768e^-4	1	INTRON Wnt4	TF binding site mE1_TFBS_cad
3L	1599283	3L_1599283_SNP [dm3] 3L_1599283_SNP [dm6]	C	T	6.772e^-4	1	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9978971	3L_9978971_SNP [dm3] 3L_9985871_SNP [dm6]	G	A	6.784e^-4	1	INTRON dpr6
3R	18554843	3R_18554843_SNP [dm3] 3R_22729121_SNP [dm6]	C	T	6.786e^-4	1	UTR_5_PRIME CG45049 INTRON CG45049
3L	2944370	3L_2944370_SNP [dm3] 3L_2944370_SNP [dm6]	T	C	6.791e^-4	1	UTR_3_PRIME Shab INTRON Shab
X	1455392	X_1455392_SNP [dm3] X_1561359_SNP [dm6]	C	T	6.835e^-4	1	INTRON Mur2B
2L	7909778	2L_7909778_SNP [dm3] 2L_7909778_SNP [dm6]	G	A	6.836e^-4	1	INTRON Snoo
2L	2858778	2L_2858778_SNP [dm3] 2L_2858778_SNP [dm6]	A	G	6.838e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6877862	3L_6877862_SNP [dm3] 3L_6884762_SNP [dm6]	T	C	6.838e^-4	1	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	6.845e^-4	1	DOWNSTREAM Obp47a INTERGENIC
3L	2403810	3L_2403810_DEL [dm3] 3L_2403810_DEL [dm6]	AACCGCA	A	6.853e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11116166	3L_11116166_SNP [dm3] 3L_11123066_SNP [dm6]	C	T	6.865e^-4	1	UTR_5_PRIME Ufd1-like UPSTREAM CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4133158	3L_4133158_SNP [dm3] 3L_4133158_SNP [dm6]	T	A	6.867e^-4	1	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13514778	X_13514778_SNP [dm3] X_13620745_SNP [dm6]	G	A	6.872e^-4	1	SYNONYMOUS_CODING CG2691
2L	20036565	2L_20036565_SNP [dm3] 2L_20036565_SNP [dm6]	A	T	6.874e^-4	1	INTRON sNPF
3R	10817019	3R_10817019_SNP [dm3] 3R_14991297_SNP [dm6]	C	G	6.877e^-4	1	INTERGENIC
3R	14049285	3R_14049285_INS [dm3] 3R_18223563_INS [dm6]	T	TTAT	6.887e^-4	1	UTR_5_PRIME mTerf5 UPSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16065038	X_16065038_DEL [dm3] X_16171005_DEL [dm6]	GACACACACGC...	G	6.888e^-4	1	INTERGENIC
3L	2850281	3L_2850281_SNP [dm3] 3L_2850281_SNP [dm6]	A	C	6.893e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17891814	2R_17891814_SNP [dm3] 2R_22004309_SNP [dm6]	C	T	6.898e^-4	1	INTRON CG34370
X	12449734	X_12449734_SNP [dm3] X_12555701_SNP [dm6]	T	A	6.902e^-4	1	INTRON CG43921
3L	5491775	3L_5491775_SNP [dm3] 3L_5498675_SNP [dm6]	G	A	6.905e^-4	1	UPSTREAM CR44518 INTRON blanks	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	7623627	2L_7623627_SNP [dm3] 2L_7623627_SNP [dm6]	C	T	6.930e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6817144	2L_6817144_SNP [dm3] 2L_6817144_SNP [dm6]	C	A	6.933e^-4	1	INTERGENIC
2L	6545757	2L_6545757_SNP [dm3] 2L_6545757_SNP [dm6]	C	T	6.940e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	4136155	3L_4136155_SNP [dm3] 3L_4136155_SNP [dm6]	A	T	6.940e^-4	1	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1006895	2L_1006895_SNP [dm3] 2L_1006895_SNP [dm6]	A	C	6.941e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2R	17470718	2R_17470718_SNP [dm3] 2R_21583213_SNP [dm6]	A	G	6.943e^-4	1	UPSTREAM CG30222 INTERGENIC
2R	4421365	2R_4421365_SNP [dm3] 2R_8533860_SNP [dm6]	A	G	6.952e^-4	1	INTERGENIC
2R	19902427	2R_19902427_SNP [dm3] 2R_24014904_SNP [dm6]	T	C	6.962e^-4	1	UPSTREAM Unc-89 DOWNSTREAM CG4324 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4640618	2L_4640618_SNP [dm3] 2L_4640618_SNP [dm6]	G	A	6.968e^-4	1	UPSTREAM BG642163 INTERGENIC
X	12889596	X_12889596_SNP [dm3] X_12995563_SNP [dm6]	G	A	6.977e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9720902	2L_9720902_DEL [dm3] 2L_9720902_DEL [dm6]	AT	A	6.982e^-4	1	INTRON Nckx30C
3R	8073735	3R_8073735_SNP [dm3] 3R_12248013_SNP [dm6]	G	C	6.990e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	17133976	2R_17133976_SNP [dm3] 2R_21246471_SNP [dm6]	G	C	6.994e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	819719	3R_819719_SNP [dm3] 3R_4993997_SNP [dm6]	A	C	7.006e^-4	1	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26051533	3R_26051533_SNP [dm3] 3R_30225811_SNP [dm6]	G	A	7.010e^-4	1	INTERGENIC
3L	3424142	3L_3424142_SNP [dm3] 3L_3424142_SNP [dm6]	A	G	7.014e^-4	1	INTRON sty	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	17466926	2R_17466926_SNP [dm3] 2R_21579421_SNP [dm6]	G	A	7.025e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8399399	3L_8399399_SNP [dm3] 3L_8406299_SNP [dm6]	A	G	7.035e^-4	1	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
3R	14536753	3R_14536753_SNP [dm3] 3R_18711031_SNP [dm6]	G	A	7.041e^-4	1	INTRON VAChT & 1 other
X	21852841	X_21852841_SNP [dm3] X_22451005_SNP [dm6]	T	G	7.057e^-4	1	DOWNSTREAM wap INTRON tilB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8946804	X_8946804_SNP [dm3] X_9052771_SNP [dm6]	G	T	7.061e^-4	1	NON_SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9690129	X_9690129_SNP [dm3] X_9796096_SNP [dm6]	T	C	7.065e^-4	1	INTRON CG32698
3R	2585079	3R_2585079_SNP [dm3] 3R_6759357_SNP [dm6]	T	A	7.072e^-4	1	UTR_5_PRIME bcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	20182833	3R_20182833_SNP [dm3] 3R_24357111_SNP [dm6]	C	A	7.080e^-4	1	NON_SYNONYMOUS_CODING Golgin84 DOWNSTREAM CG6454 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3816995	2R_3816995_SNP [dm3] 2R_7929490_SNP [dm6]	G	A	7.085e^-4	1	SYNONYMOUS_CODING CG8791 DOWNSTREAM CG30381	TF binding site mE1_TFBS_cad
2L	12329980	2L_12329980_SNP [dm3] 2L_12329980_SNP [dm6]	C	A	7.099e^-4	1	INTERGENIC
2R	18316747	2R_18316747_SNP [dm3] 2R_22429242_SNP [dm6]	G	A	7.106e^-4	1	INTRON ppk12
X	9447060	X_9447060_SNP [dm3] X_9553027_SNP [dm6]	A	G	7.114e^-4	1	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4248502	3L_4248502_SNP [dm3] 3L_4248502_SNP [dm6]	A	G	7.123e^-4	1	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

EarlyAct phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results