DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.814e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.02692
In_3R_K	0.04075

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	4.9789	0.083

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2040 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6690585	2L_6690585_SNP [dm3] 2L_6690585_SNP [dm6]	A	T	3.711e^-7	0.409	INTRON Tsp
2R	1763232	2R_1763232_SNP [dm3] 2R_5875727_SNP [dm6]	T	G	4.892e^-7	0.409	INTERGENIC
X	6123877	X_6123877_SNP [dm3] X_6229844_SNP [dm6]	A	C	6.545e^-7	0.409	SPLICE_SITE_ACCEPTOR CG14446 SPLICE_SITE_REGION CG14446 INTRON CG14446
2L	15177343	2L_15177343_DEL [dm3] 2L_15177343_DEL [dm6]	TCT	AG	1.392e^-6	0.476	INTRON CG4168
3R	26700572	3R_26700572_INS [dm3] 3R_30874850_INS [dm6]	G	GATAG	1.590e^-6	0.476	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
X	18427520	X_18427520_INS [dm3] X_18533487_INS [dm6]	A	AA	1.637e^-6	0.476	INTRON Bx	TF binding site BDTNP1_TFBS_dl
2R	13764194	2R_13764194_SNP [dm3] 2R_17876689_SNP [dm6]	T	C	1.779e^-6	0.476	DOWNSTREAM CG30325 INTRON Elk
3L	20786909	3L_20786909_SNP [dm3] 3L_20793809_SNP [dm6]	C	G	3.437e^-6	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11551096	3R_11551096_SNP [dm3] 3R_15725374_SNP [dm6]	C	G	3.452e^-6	0.645	INTERGENIC
3R	27510691	3R_27510691_SNP [dm3] 3R_31684969_SNP [dm6]	G	A	3.552e^-6	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6305126	2R_6305126_SNP [dm3] 2R_10417621_SNP [dm6]	G	A	3.783e^-6	0.645	UPSTREAM CG42732 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	3464623	X_3464623_SNP [dm3] X_3570590_SNP [dm6]	C	G	4.244e^-6	0.663	DOWNSTREAM CG2875 INTRON CG32791 & 1 other	TF binding site mE1_TFBS_sens
2L	6326078	2L_6326078_SNP [dm3] 2L_6326078_SNP [dm6]	C	T	5.908e^-6	0.795	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26700538	3R_26700538_DEL [dm3] 3R_30874816_DEL [dm6]	TT	G	6.176e^-6	0.795	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3L	2756172	3L_2756172_SNP [dm3] 3L_2756172_SNP [dm6]	G	A	6.815e^-6	0.795	INTRON Mrtf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26700569	3R_26700569_SNP [dm3] 3R_30874847_SNP [dm6]	C	A	7.003e^-6	0.795	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
X	3464629	X_3464629_SNP [dm3] X_3570596_SNP [dm6]	C	A	7.555e^-6	0.795	DOWNSTREAM CG2875 INTRON CG32791 & 1 other	TF binding site mE1_TFBS_sens
X	17163604	X_17163604_SNP [dm3] X_17269571_SNP [dm6]	A	T	7.788e^-6	0.795	INTRON f
X	18427514	X_18427514_SNP [dm3] X_18533481_SNP [dm6]	T	C	8.059e^-6	0.795	INTRON Bx	TF binding site BDTNP1_TFBS_dl
2L	8131746	2L_8131746_SNP [dm3] 2L_8131746_SNP [dm6]	G	A	8.573e^-6	0.802	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4005442	2L_4005442_SNP [dm3] 2L_4005442_SNP [dm6]	G	A	8.981e^-6	0.802	UTR_3_PRIME CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
2L	13095101	2L_13095101_SNP [dm3] 2L_13095101_SNP [dm6]	T	C	9.631e^-6	0.821	INTERGENIC
X	4207725	X_4207725_SNP [dm3] X_4313692_SNP [dm6]	T	G	1.043e^-5	0.831	DOWNSTREAM mei-9 INTRON CR44957
X	12136186	X_12136186_SNP [dm3] X_12242153_SNP [dm6]	G	T	1.073e^-5	0.831	INTRON Ten-a
X	14048631	X_14048631_SNP [dm3] X_14154598_SNP [dm6]	T	G	1.125e^-5	0.831	INTERGENIC
X	4207737	X_4207737_SNP [dm3] X_4313704_SNP [dm6]	T	A	1.165e^-5	0.831	DOWNSTREAM mei-9 INTRON CR44957
2R	1767538	2R_1767538_SNP [dm3] 2R_5880033_SNP [dm6]	G	A	1.203e^-5	0.831	UTR_5_PRIME CG44438
3R	13394726	3R_13394726_SNP [dm3] 3R_17569004_SNP [dm6]	T	C	1.269e^-5	0.831	UTR_3_PRIME Hmx DOWNSTREAM Hmx
X	12136180	X_12136180_SNP [dm3] X_12242147_SNP [dm6]	T	A	1.292e^-5	0.831	INTRON Ten-a
3R	26700558	3R_26700558_SNP [dm3] 3R_30874836_SNP [dm6]	A	T	1.330e^-5	0.831	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2R	7061436	2R_7061436_DEL [dm3] 2R_11173931_DEL [dm6]	AA	A	1.589e^-5	0.861	UTR_5_PRIME shn INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18733139	2R_18733139_INS [dm3] 2R_22845616_INS [dm6]	T	AGAAATGCA	1.703e^-5	0.861	UPSTREAM CG3649 INTERGENIC
2R	18733145	2R_18733145_SNP [dm3] 2R_22845622_SNP [dm6]	T	A	1.703e^-5	0.861	UPSTREAM CG3649 INTERGENIC
3R	26068611	3R_26068611_SNP [dm3] 3R_30242889_SNP [dm6]	A	G	1.731e^-5	0.861	SYNONYMOUS_CODING CG9737
2L	16711906	2L_16711906_SNP [dm3] 2L_16711906_SNP [dm6]	G	A	1.820e^-5	0.861	INTRON CG31808
X	2767502	X_2767502_SNP [dm3] X_2873469_SNP [dm6]	C	A	1.851e^-5	0.861	UPSTREAM CG14416 INTRON kirre
3R	15081327	3R_15081327_SNP [dm3] 3R_19255605_SNP [dm6]	C	T	1.852e^-5	0.861	INTERGENIC
3L	11204075	3L_11204075_SNP [dm3] 3L_11210975_SNP [dm6]	C	A	1.867e^-5	0.861	SYNONYMOUS_CODING CG7600 UPSTREAM Ube3a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14061490	X_14061490_DEL [dm3] X_14167457_DEL [dm6]	AAACTTGATCTATTGTTTGG...	A	1.985e^-5	0.861	INTERGENIC
X	12136173	X_12136173_INS [dm3] X_12242140_INS [dm6]	T	TGGTATGCTAGATAACAATT...	2.005e^-5	0.861	INTRON Ten-a
2L	8334626	2L_8334626_SNP [dm3] 2L_8334626_SNP [dm6]	A	C	2.093e^-5	0.861	INTERGENIC
2R	15197886	2R_15197886_SNP [dm3] 2R_19310381_SNP [dm6]	A	C	2.223e^-5	0.861	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
2L	15177339	2L_15177339_SNP [dm3] 2L_15177339_SNP [dm6]	G	A	2.238e^-5	0.861	INTRON CG4168
2L	17431580	2L_17431580_SNP [dm3] 2L_17431580_SNP [dm6]	C	G	2.238e^-5	0.861	INTRON Dif
X	19868563	X_19868563_INS [dm3] X_19974530_INS [dm6]	A	ACACAGTGT	2.293e^-5	0.861	INTERGENIC
3L	2726578	3L_2726578_DEL [dm3] 3L_2726578_DEL [dm6]	AATAGCA	A	2.424e^-5	0.861	INTRON Mrtf
2R	15197839	2R_15197839_SNP [dm3] 2R_19310334_SNP [dm6]	A	G	2.447e^-5	0.861	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
X	13086590	X_13086590_SNP [dm3] X_13192557_SNP [dm6]	T	G	2.536e^-5	0.861	UPSTREAM CG12723 DOWNSTREAM CG2453 INTERGENIC
2L	16028551	2L_16028551_SNP [dm3] 2L_16028551_SNP [dm6]	T	C	2.537e^-5	0.861	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8131748	2L_8131748_SNP [dm3] 2L_8131748_SNP [dm6]	G	A	2.599e^-5	0.861	NON_SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26182355	3R_26182355_SNP [dm3] 3R_30356633_SNP [dm6]	A	G	2.659e^-5	0.861	INTRON hdc
X	8841669	X_8841669_SNP [dm3] X_8947636_SNP [dm6]	A	G	2.743e^-5	0.861	INTRON rdgA
X	12136165	X_12136165_SNP [dm3] X_12242132_SNP [dm6]	T	C	2.806e^-5	0.861	INTRON Ten-a
3R	26649828	3R_26649828_SNP [dm3] 3R_30824106_SNP [dm6]	G	A	2.821e^-5	0.861	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2L	11872752	2L_11872752_SNP [dm3] 2L_11872752_SNP [dm6]	C	A	2.839e^-5	0.861	INTRON Pde1c
3R	19688846	3R_19688846_SNP [dm3] 3R_23863124_SNP [dm6]	A	C	2.847e^-5	0.861	SYNONYMOUS_CODING Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12017288	3R_12017288_SNP [dm3] 3R_16191566_SNP [dm6]	A	T	2.882e^-5	0.861	INTRON sra
2L	13537014	2L_13537014_SNP [dm3] 2L_13537014_SNP [dm6]	G	T	2.927e^-5	0.861	INTRON B4
2L	13537039	2L_13537039_SNP [dm3] 2L_13537039_SNP [dm6]	G	A	2.927e^-5	0.861	INTRON B4
2L	10580169	2L_10580169_SNP [dm3] 2L_10580169_SNP [dm6]	G	A	3.017e^-5	0.861	NON_SYNONYMOUS_CODING CG34160 DOWNSTREAM CG34161 INTRON Trim9
3R	20332253	3R_20332253_SNP [dm3] 3R_24506531_SNP [dm6]	C	T	3.063e^-5	0.861	INTERGENIC
3L	4027313	3L_4027313_SNP [dm3] 3L_4027313_SNP [dm6]	G	C	3.080e^-5	0.861	NON_SYNONYMOUS_CODING Gr64a
3L	4027318	3L_4027318_SNP [dm3] 3L_4027318_SNP [dm6]	C	T	3.116e^-5	0.861	SYNONYMOUS_CODING Gr64a
2L	8045319	2L_8045319_SNP [dm3] 2L_8045319_SNP [dm6]	G	A	3.180e^-5	0.861	NON_SYNONYMOUS_CODING CG7466
X	16557862	X_16557862_SNP [dm3] X_16663829_SNP [dm6]	A	T	3.221e^-5	0.861	INTRON r & 1 other	TF binding site mE1_TFBS_chinmo
3L	4027291	3L_4027291_SNP [dm3] 3L_4027291_SNP [dm6]	C	T	3.223e^-5	0.861	SYNONYMOUS_CODING Gr64a
X	11235925	X_11235925_SNP [dm3] X_11341892_SNP [dm6]	G	T	3.227e^-5	0.861	INTRON CG34348	TF binding site BDTNP1_TFBS_dl
3L	4027229	3L_4027229_SNP [dm3] 3L_4027229_SNP [dm6]	G	A	3.281e^-5	0.861	INTRON Gr64a
2L	5841406	2L_5841406_SNP [dm3] 2L_5841406_SNP [dm6]	G	T	3.302e^-5	0.861	INTRON TrissinR
3L	3682683	3L_3682683_SNP [dm3] 3L_3682683_SNP [dm6]	C	T	3.388e^-5	0.861	INTERGENIC
2L	5840493	2L_5840493_SNP [dm3] 2L_5840493_SNP [dm6]	C	T	3.410e^-5	0.861	INTRON TrissinR
3R	15108766	3R_15108766_SNP [dm3] 3R_19283044_SNP [dm6]	A	G	3.426e^-5	0.861	INTERGENIC
3L	20830294	3L_20830294_SNP [dm3] 3L_20837194_SNP [dm6]	T	C	3.455e^-5	0.861	UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288 INTERGENIC
3L	20830715	3L_20830715_SNP [dm3] 3L_20837615_SNP [dm6]	G	A	3.460e^-5	0.861	START_GAINED CG13255 UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
2R	15197906	2R_15197906_SNP [dm3] 2R_19310401_SNP [dm6]	T	C	3.500e^-5	0.861	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
3R	9731277	3R_9731277_SNP [dm3] 3R_13905555_SNP [dm6]	A	T	3.505e^-5	0.861	DOWNSTREAM ems INTERGENIC
X	4207789	X_4207789_SNP [dm3] X_4313756_SNP [dm6]	G	C	3.622e^-5	0.861	DOWNSTREAM mei-9 EXON CR44957
2L	668623	2L_668623_SNP [dm3] 2L_668623_SNP [dm6]	G	A	3.643e^-5	0.861	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14048632	X_14048632_SNP [dm3] X_14154599_SNP [dm6]	C	T	3.656e^-5	0.861	INTERGENIC
2L	8183699	2L_8183699_SNP [dm3] 2L_8183699_SNP [dm6]	T	C	3.673e^-5	0.861	SYNONYMOUS_CODING Piezo
2L	6326081	2L_6326081_SNP [dm3] 2L_6326081_SNP [dm6]	A	G	3.736e^-5	0.865	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25022067	3R_25022067_SNP [dm3] 3R_29196345_SNP [dm6]	C	T	3.922e^-5	0.888	INTERGENIC
X	9179892	X_9179892_SNP [dm3] X_9285859_SNP [dm6]	C	G	4.083e^-5	0.888	UTR_5_PRIME lz
2R	7060461	2R_7060461_SNP [dm3] 2R_11172956_SNP [dm6]	A	C	4.088e^-5	0.888	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	20830760	3L_20830760_SNP [dm3] 3L_20837660_SNP [dm6]	G	A	4.159e^-5	0.888	UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
2R	1580839	2R_1580839_SNP [dm3] 2R_5693334_SNP [dm6]	C	T	4.162e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
X	9929426	X_9929426_SNP [dm3] X_10035393_SNP [dm6]	C	T	4.170e^-5	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
2R	16255161	2R_16255161_SNP [dm3] 2R_20367656_SNP [dm6]	C	A	4.229e^-5	0.888	INTERGENIC
3R	21326483	3R_21326483_SNP [dm3] 3R_25500761_SNP [dm6]	C	T	4.326e^-5	0.888	INTERGENIC
3R	21326492	3R_21326492_SNP [dm3] 3R_25500770_SNP [dm6]	T	G	4.326e^-5	0.888	INTERGENIC
3R	26392541	3R_26392541_SNP [dm3] 3R_30566819_SNP [dm6]	G	A	4.345e^-5	0.888	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2R	9236151	2R_9236151_SNP [dm3] 2R_13348646_SNP [dm6]	C	T	4.429e^-5	0.888	INTRON CR44206
2R	20101336	2R_20101336_SNP [dm3] 2R_24213813_SNP [dm6]	T	C	4.614e^-5	0.888	UTR_3_PRIME CG30419
3R	25121905	3R_25121905_SNP [dm3] 3R_29296183_SNP [dm6]	A	T	4.615e^-5	0.888	NON_SYNONYMOUS_CODING CG14506
2R	3518346	2R_3518346_SNP [dm3] 2R_7630841_SNP [dm6]	C	T	4.628e^-5	0.888	DOWNSTREAM CR45131 INTRON CG43340	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4900998	3L_4900998_SNP [dm3] 3L_4900998_SNP [dm6]	C	G	4.639e^-5	0.888	DOWNSTREAM CG13704 INTERGENIC
2L	15872124	2L_15872124_SNP [dm3] 2L_15872124_SNP [dm6]	C	T	4.648e^-5	0.888	INTERGENIC
2L	15061399	2L_15061399_SNP [dm3] 2L_15061399_SNP [dm6]	T	A	4.715e^-5	0.888	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26948426	3R_26948426_SNP [dm3] 3R_31122704_SNP [dm6]	G	A	4.788e^-5	0.888	SYNONYMOUS_CODING Prosalpha3T
X	19008770	X_19008770_SNP [dm3] X_19114737_SNP [dm6]	T	A	4.831e^-5	0.888	INTERGENIC
3R	4937318	3R_4937318_SNP [dm3] 3R_9111596_SNP [dm6]	C	T	5.027e^-5	0.888	INTRON pum
X	8841682	X_8841682_DEL [dm3] X_8947649_DEL [dm6]	TT	T	5.059e^-5	0.888	INTRON rdgA
X	16592688	X_16592688_SNP [dm3] X_16698655_SNP [dm6]	T	C	5.083e^-5	0.888	DOWNSTREAM CG9676 INTRON CG4678
3R	16872564	3R_16872564_INS [dm3] 3R_21046842_INS [dm6]	A	AT	5.094e^-5	0.888	DOWNSTREAM CG7079 INTRON CG31207
3L	12960974	3L_12960974_SNP [dm3] 3L_12967874_SNP [dm6]	C	A	5.107e^-5	0.888	UPSTREAM Or69a INTERGENIC
2L	10119411	2L_10119411_SNP [dm3] 2L_10119411_SNP [dm6]	T	C	5.300e^-5	0.888	INTRON CG44153 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14751594	2L_14751594_SNP [dm3] 2L_14751594_SNP [dm6]	T	C	5.343e^-5	0.888	INTERGENIC
X	4207747	X_4207747_SNP [dm3] X_4313714_SNP [dm6]	T	G	5.454e^-5	0.888	DOWNSTREAM mei-9 INTRON CR44957
2L	11074688	2L_11074688_SNP [dm3] 2L_11074688_SNP [dm6]	A	G	5.470e^-5	0.888	UPSTREAM CG43725 EXON CR45725	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8043144	2L_8043144_INS [dm3] 2L_8043144_INS [dm6]	A	AA	5.490e^-5	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20955341	3R_20955341_DEL [dm3] 3R_25129619_DEL [dm6]	TC	G	5.508e^-5	0.888	INTRON Clbn
X	14135391	X_14135391_SNP [dm3] X_14241358_SNP [dm6]	G	T	5.536e^-5	0.888	INTRON mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19707505	2R_19707505_SNP [dm3] 2R_23819982_SNP [dm6]	A	T	5.542e^-5	0.888	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13764150	2R_13764150_SNP [dm3] 2R_17876645_SNP [dm6]	T	A	5.560e^-5	0.888	DOWNSTREAM CG30325 INTRON Elk
2R	1588981	2R_1588981_SNP [dm3] 2R_5701476_SNP [dm6]	C	A	5.719e^-5	0.888	UPSTREAM vlc INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17398396	3L_17398396_SNP [dm3] 3L_17405296_SNP [dm6]	T	C	5.779e^-5	0.888	UPSTREAM blot INTRON blot
3L	4027306	3L_4027306_SNP [dm3] 3L_4027306_SNP [dm6]	G	C	5.779e^-5	0.888	SYNONYMOUS_CODING Gr64a
2R	6305342	2R_6305342_SNP [dm3] 2R_10417837_SNP [dm6]	A	T	5.984e^-5	0.888	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7913056	2R_7913056_SNP [dm3] 2R_12025551_SNP [dm6]	T	C	6.026e^-5	0.888	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2687778	2L_2687778_SNP [dm3] 2L_2687778_SNP [dm6]	C	A	6.079e^-5	0.888	INTRON CG31690
2L	14404481	2L_14404481_SNP [dm3] 2L_14404481_SNP [dm6]	A	G	6.150e^-5	0.888	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2581277	2R_2581277_SNP [dm3] 2R_6693772_SNP [dm6]	T	A	6.212e^-5	0.888	DOWNSTREAM CG9422 INTRON CG3270	TF binding site mE1_TFBS_chinmo
3L	12383567	3L_12383567_SNP [dm3] 3L_12390467_SNP [dm6]	G	T	6.266e^-5	0.888	INTRON Ncc69
3R	13844237	3R_13844237_INS [dm3] 3R_18018515_INS [dm6]	C	CCAACAG	6.276e^-5	0.888	UTR_3_PRIME cpo UPSTREAM DNaseII
2R	16034459	2R_16034459_SNP [dm3] 2R_20146954_SNP [dm6]	G	A	6.430e^-5	0.888	DOWNSTREAM CG11041 INTERGENIC
2L	6908138	2L_6908138_SNP [dm3] 2L_6908138_SNP [dm6]	G	A	6.585e^-5	0.888	UTR_5_PRIME Rat1 UPSTREAM CG13773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25121941	3R_25121941_SNP [dm3] 3R_29296219_SNP [dm6]	G	A	6.596e^-5	0.888	NON_SYNONYMOUS_CODING CG14506
2R	3733805	2R_3733805_INS [dm3] 2R_7846300_INS [dm6]	C	CGGC	6.636e^-5	0.888	INTRON Dgk
3L	2278285	3L_2278285_SNP [dm3] 3L_2278285_SNP [dm6]	C	A	6.671e^-5	0.888	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
2L	12300646	2L_12300646_SNP [dm3] 2L_12300646_SNP [dm6]	G	C	6.823e^-5	0.888	INTRON aret	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	19108528	2R_19108528_SNP [dm3] 2R_23221005_SNP [dm6]	G	C	6.915e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20786912	3L_20786912_SNP [dm3] 3L_20793812_SNP [dm6]	C	T	6.963e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11221788	2L_11221788_SNP [dm3] 2L_11221788_SNP [dm6]	C	T	7.007e^-5	0.888	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22181310	2L_22181310_SNP [dm3] 2L_22181310_SNP [dm6]	T	G	7.141e^-5	0.888	INTRON CG3635
3R	15081201	3R_15081201_SNP [dm3] 3R_19255479_SNP [dm6]	G	A	7.171e^-5	0.888	INTERGENIC
2R	17429426	2R_17429426_DEL [dm3] 2R_21541921_DEL [dm6]	CC	C	7.188e^-5	0.888	INTRON Egfr
2R	18490344	2R_18490344_SNP [dm3] 2R_22602839_SNP [dm6]	T	G	7.258e^-5	0.888	NON_SYNONYMOUS_CODING CG4294
3R	23517119	3R_23517119_SNP [dm3] 3R_27691397_SNP [dm6]	G	A	7.269e^-5	0.888	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	1889555	2R_1889555_SNP [dm3] 2R_6002050_SNP [dm6]	G	T	7.291e^-5	0.888	INTRON Src42A
3R	21323825	3R_21323825_SNP [dm3] 3R_25498103_SNP [dm6]	A	T	7.515e^-5	0.888	INTERGENIC
X	6489512	X_6489512_SNP [dm3] X_6595479_SNP [dm6]	A	G	7.533e^-5	0.888	SPLICE_SITE_REGION Pat1 INTRON Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22696457	3R_22696457_SNP [dm3] 3R_26870735_SNP [dm6]	G	T	7.550e^-5	0.888	UPSTREAM BM-40-SPARC INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	1910684	2R_1910684_SNP [dm3] 2R_6023179_SNP [dm6]	A	G	7.724e^-5	0.888	UPSTREAM dream INTERGENIC	TF binding site mE1_TFBS_cad
3L	10200184	3L_10200184_SNP [dm3] 3L_10207084_SNP [dm6]	A	C	7.749e^-5	0.888	DOWNSTREAM CR44538 INTERGENIC
X	3137574	X_3137574_SNP [dm3] X_3243541_SNP [dm6]	C	A	7.822e^-5	0.888	DOWNSTREAM ng1 & 1 other INTRON dnc
X	6120660	X_6120660_SNP [dm3] X_6226627_SNP [dm6]	G	A	7.860e^-5	0.888	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15081129	3R_15081129_SNP [dm3] 3R_19255407_SNP [dm6]	A	T	7.879e^-5	0.888	INTERGENIC
2L	6012777	2L_6012777_SNP [dm3] 2L_6012777_SNP [dm6]	A	T	7.949e^-5	0.888	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
2L	8131734	2L_8131734_SNP [dm3] 2L_8131734_SNP [dm6]	A	G	7.991e^-5	0.888	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9215691	2R_9215691_SNP [dm3] 2R_13328186_SNP [dm6]	T	C	8.018e^-5	0.888	INTERGENIC
2L	15526085	2L_15526085_SNP [dm3] 2L_15526085_SNP [dm6]	T	C	8.148e^-5	0.888	INTERGENIC
2R	15197949	2R_15197949_DEL [dm3] 2R_19310444_DEL [dm6]	TT	T	8.241e^-5	0.888	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
X	9930281	X_9930281_SNP [dm3] X_10036248_SNP [dm6]	G	C	8.268e^-5	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3265407	2L_3265407_SNP [dm3] 2L_3265407_SNP [dm6]	A	G	8.290e^-5	0.888	EXON CR45706
2R	16034258	2R_16034258_SNP [dm3] 2R_20146753_SNP [dm6]	G	T	8.294e^-5	0.888	INTRON CG11041
3R	2996333	3R_2996333_SNP [dm3] 3R_7170611_SNP [dm6]	A	G	8.302e^-5	0.888	INTRON sas
X	12136157	X_12136157_SNP [dm3] X_12242124_SNP [dm6]	A	T	8.424e^-5	0.888	INTRON Ten-a
2L	16712004	2L_16712004_SNP [dm3] 2L_16712004_SNP [dm6]	T	G	8.428e^-5	0.888	INTRON CG31808
X	9929789	X_9929789_SNP [dm3] X_10035756_SNP [dm6]	A	C	8.530e^-5	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA
2L	15526076	2L_15526076_SNP [dm3] 2L_15526076_SNP [dm6]	A	T	8.572e^-5	0.888	INTERGENIC
3R	14939228	3R_14939228_SNP [dm3] 3R_19113506_SNP [dm6]	T	G	8.616e^-5	0.888	INTRON CG6040
X	9929724	X_9929724_SNP [dm3] X_10035691_SNP [dm6]	C	A	8.688e^-5	0.888	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16436287	X_16436287_SNP [dm3] X_16542254_SNP [dm6]	A	G	8.717e^-5	0.888	UTR_3_PRIME CG9902
2R	3772538	2R_3772538_SNP [dm3] 2R_7885033_SNP [dm6]	C	T	8.778e^-5	0.888	INTRON Dgk
3L	4027366	3L_4027366_SNP [dm3] 3L_4027366_SNP [dm6]	G	C	8.836e^-5	0.888	SYNONYMOUS_CODING Gr64a
3R	19688693	3R_19688693_SNP [dm3] 3R_23862971_SNP [dm6]	G	C	8.843e^-5	0.888	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15063629	2L_15063629_SNP [dm3] 2L_15063629_SNP [dm6]	T	C	8.848e^-5	0.888	UTR_3_PRIME vig DOWNSTREAM vig INTRON vas
3L	9384634	3L_9384634_SNP [dm3] 3L_9391534_SNP [dm6]	T	C	8.953e^-5	0.888	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
2R	1702524	2R_1702524_SNP [dm3] 2R_5815019_SNP [dm6]	C	A	9.019e^-5	0.888	INTRON dpr12	TF binding site mE1_TFBS_HSA
2R	1767587	2R_1767587_SNP [dm3] 2R_5880082_SNP [dm6]	C	T	9.101e^-5	0.888	UTR_5_PRIME CG44438
3R	20955361	3R_20955361_SNP [dm3] 3R_25129639_SNP [dm6]	A	T	9.149e^-5	0.888	INTRON Clbn
2L	7278100	2L_7278100_SNP [dm3] 2L_7278100_SNP [dm6]	C	A	9.186e^-5	0.888	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	17736861	3L_17736861_SNP [dm3] 3L_17743761_SNP [dm6]	G	T	9.292e^-5	0.888	INTRON Ccn
X	10024990	X_10024990_SNP [dm3] X_10130957_SNP [dm6]	C	T	9.315e^-5	0.888	INTRON CR44894 & 1 other
3R	19897498	3R_19897498_SNP [dm3] 3R_24071776_SNP [dm6]	G	A	9.338e^-5	0.888	INTRON 4EHP
2L	20940183	2L_20940183_SNP [dm3] 2L_20940183_SNP [dm6]	A	C	9.545e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16033669	2R_16033669_SNP [dm3] 2R_20146164_SNP [dm6]	G	A	9.592e^-5	0.888	INTRON CG11041
2L	2688505	2L_2688505_DEL [dm3] 2L_2688505_DEL [dm6]	TAAAAAGTACTT...	T	9.740e^-5	0.888	INTRON CG31690
2R	13336250	2R_13336250_DEL [dm3] 2R_17448745_DEL [dm6]	ATA	A	9.997e^-5	0.888	UTR_3_PRIME mthl3
3R	25121936	3R_25121936_SNP [dm3] 3R_29296214_SNP [dm6]	G	A	1.013e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
3L	9428657	3L_9428657_SNP [dm3] 3L_9435557_SNP [dm6]	T	G	1.018e^-4	0.888	UTR_5_PRIME MTF-1 UPSTREAM CG42526 INTRON MTF-1
3R	26707680	3R_26707680_SNP [dm3] 3R_30881958_SNP [dm6]	A	G	1.034e^-4	0.888	UTR_3_PRIME CG15547 UPSTREAM CG12071	TF binding site mE1_TFBS_cad
2R	987628	2R_987628_SNP [dm3] 2R_5100123_SNP [dm6]	G	T	1.046e^-4	0.888	INTERGENIC	transposable element FlyBase
2R	7681493	2R_7681493_SNP [dm3] 2R_11793988_SNP [dm6]	C	G	1.054e^-4	0.888	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	16341212	2L_16341212_SNP [dm3] 2L_16341212_SNP [dm6]	T	A	1.058e^-4	0.888	SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3030787	3L_3030787_SNP [dm3] 3L_3030787_SNP [dm6]	C	T	1.059e^-4	0.888	INTERGENIC
2L	5743064	2L_5743064_INS [dm3] 2L_5743064_INS [dm6]	A	ATAGTTGAAA	1.060e^-4	0.888	INTRON CG11030
3R	17726051	3R_17726051_SNP [dm3] 3R_21900329_SNP [dm6]	A	C	1.060e^-4	0.888	INTRON CG6678
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	1.073e^-4	0.888	INTRON CG4168
X	2767469	X_2767469_SNP [dm3] X_2873436_SNP [dm6]	G	T	1.075e^-4	0.888	UPSTREAM CG14416 INTRON kirre
3L	2228756	3L_2228756_SNP [dm3] 3L_2228756_SNP [dm6]	A	T	1.078e^-4	0.888	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	21745904	2L_21745904_SNP [dm3] 2L_21745904_SNP [dm6]	A	G	1.084e^-4	0.888	INTRON step	transposable element FlyBase
2R	1609405	2R_1609405_SNP [dm3] 2R_5721900_SNP [dm6]	T	C	1.093e^-4	0.888	INTRON ap
X	6318251	X_6318251_SNP [dm3] X_6424218_SNP [dm6]	A	G	1.098e^-4	0.888	INTRON CG42340
2R	6993365	2R_6993365_SNP [dm3] 2R_11105860_SNP [dm6]	C	A	1.104e^-4	0.888	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	4784075	3L_4784075_SNP [dm3] 3L_4784075_SNP [dm6]	A	G	1.104e^-4	0.888	INTRON RhoGEF64C
3L	5469097	3L_5469097_SNP [dm3] 3L_5475997_SNP [dm6]	G	A	1.117e^-4	0.888	INTERGENIC
2L	2923156	2L_2923156_SNP [dm3] 2L_2923156_SNP [dm6]	T	C	1.128e^-4	0.888	INTRON lilli
2L	21963699	2L_21963699_SNP [dm3] 2L_21963699_SNP [dm6]	A	T	1.141e^-4	0.888	INTERGENIC
2L	2875840	2L_2875840_SNP [dm3] 2L_2875840_SNP [dm6]	A	G	1.146e^-4	0.888	SYNONYMOUS_CODING CG8814	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11177245	X_11177245_SNP [dm3] X_11283212_SNP [dm6]	T	A	1.147e^-4	0.888	INTRON CG44422
2L	22181251	2L_22181251_SNP [dm3] 2L_22181251_SNP [dm6]	T	A	1.149e^-4	0.888	INTRON CG3635
3R	19658864	3R_19658864_SNP [dm3] 3R_23833142_SNP [dm6]	T	C	1.150e^-4	0.888	INTRON CG34355
2R	9215699	2R_9215699_SNP [dm3] 2R_13328194_SNP [dm6]	C	A	1.154e^-4	0.888	INTERGENIC
2L	13077074	2L_13077074_SNP [dm3] 2L_13077074_SNP [dm6]	C	A	1.164e^-4	0.888	INTERGENIC
2L	22060326	2L_22060326_SNP [dm3] 2L_22060326_SNP [dm6]	G	A	1.173e^-4	0.888	INTERGENIC
2R	19050439	2R_19050439_SNP [dm3] 2R_23162916_SNP [dm6]	T	A	1.186e^-4	0.888	DOWNSTREAM CG34371 & 1 other INTERGENIC
2R	7681505	2R_7681505_SNP [dm3] 2R_11794000_SNP [dm6]	C	T	1.194e^-4	0.888	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	17757810	3R_17757810_SNP [dm3] 3R_21932088_SNP [dm6]	A	G	1.207e^-4	0.888	INTERGENIC
3R	25231538	3R_25231538_INS [dm3] 3R_29405816_INS [dm6]	T	TCTGT	1.208e^-4	0.888	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	11305031	3L_11305031_SNP [dm3] 3L_11311931_SNP [dm6]	T	C	1.218e^-4	0.888	SYNONYMOUS_CODING CG7573
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	1.220e^-4	0.888	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2L	15565417	2L_15565417_SNP [dm3] 2L_15565417_SNP [dm6]	A	G	1.221e^-4	0.888	INTRON kek3
3R	21315147	3R_21315147_SNP [dm3] 3R_25489425_SNP [dm6]	T	C	1.228e^-4	0.888	INTRON Dhap-at
2R	20018401	2R_20018401_SNP [dm3] 2R_24130878_SNP [dm6]	C	T	1.228e^-4	0.888	INTRON tamo
3R	20955356	3R_20955356_SNP [dm3] 3R_25129634_SNP [dm6]	G	C	1.232e^-4	0.888	INTRON Clbn
3R	27619217	3R_27619217_SNP [dm3] 3R_31793495_SNP [dm6]	C	T	1.234e^-4	0.888	UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	27615777	3R_27615777_SNP [dm3] 3R_31790055_SNP [dm6]	T	A	1.244e^-4	0.888	UTR_3_PRIME faf DOWNSTREAM CG2118
X	8998260	X_8998260_SNP [dm3] X_9104227_SNP [dm6]	A	G	1.245e^-4	0.888	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5432823	3R_5432823_SNP [dm3] 3R_9607101_SNP [dm6]	T	C	1.246e^-4	0.888	INTRON CG8312
2L	11185824	2L_11185824_SNP [dm3] 2L_11185824_SNP [dm6]	C	T	1.250e^-4	0.888	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14429016	X_14429016_SNP [dm3] X_14534983_SNP [dm6]	T	C	1.252e^-4	0.888	INTERGENIC
2L	16413166	2L_16413166_SNP [dm3] 2L_16413166_SNP [dm6]	A	G	1.253e^-4	0.888	INTRON CG5888	TF binding site mE1_TFBS_HSA
3L	11304842	3L_11304842_SNP [dm3] 3L_11311742_SNP [dm6]	T	C	1.257e^-4	0.888	UPSTREAM CG7573 INTERGENIC
X	6476934	X_6476934_SNP [dm3] X_6582901_SNP [dm6]	A	C	1.263e^-4	0.888	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12241518	X_12241518_SNP [dm3] X_12347485_SNP [dm6]	T	A	1.272e^-4	0.888	INTERGENIC
2R	10829718	2R_10829718_SNP [dm3] 2R_14942213_SNP [dm6]	T	A	1.279e^-4	0.888	UPSTREAM CG10257 INTERGENIC
3R	23539408	3R_23539408_SNP [dm3] 3R_27713686_SNP [dm6]	T	A	1.286e^-4	0.888	INTERGENIC
2L	14893285	2L_14893285_SNP [dm3] 2L_14893285_SNP [dm6]	G	A	1.298e^-4	0.888	INTERGENIC
2L	17431582	2L_17431582_SNP [dm3] 2L_17431582_SNP [dm6]	T	C	1.304e^-4	0.888	INTRON Dif
3R	13115437	3R_13115437_SNP [dm3] 3R_17289715_SNP [dm6]	T	A	1.304e^-4	0.888	DOWNSTREAM CR43490 INTERGENIC
2L	22114678	2L_22114678_INS [dm3] 2L_22114678_INS [dm6]	A	AGCCGAATCTATGTA...	1.316e^-4	0.888	INTERGENIC	transposable element FlyBase
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	1.316e^-4	0.888	INTRON dpr3
3L	3682847	3L_3682847_SNP [dm3] 3L_3682847_SNP [dm6]	C	A	1.320e^-4	0.888	INTERGENIC
2R	13174058	2R_13174058_SNP [dm3] 2R_17286553_SNP [dm6]	C	G	1.323e^-4	0.888	INTRON mbl	TF binding site mE1_TFBS_HSA
2L	11399959	2L_11399959_SNP [dm3] 2L_11399959_SNP [dm6]	C	G	1.326e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
3R	23647438	3R_23647438_SNP [dm3] 3R_27821716_SNP [dm6]	C	A	1.328e^-4	0.888	INTRON CG34353
3L	8008142	3L_8008142_SNP [dm3] 3L_8015042_SNP [dm6]	A	G	1.335e^-4	0.888	INTRON nmo
3R	22915183	3R_22915183_SNP [dm3] 3R_27089461_SNP [dm6]	T	C	1.344e^-4	0.888	DOWNSTREAM Cpr97Eb INTERGENIC
2L	5420058	2L_5420058_SNP [dm3] 2L_5420058_SNP [dm6]	C	T	1.345e^-4	0.888	INTERGENIC
3L	11304879	3L_11304879_SNP [dm3] 3L_11311779_SNP [dm6]	T	C	1.352e^-4	0.888	UTR_5_PRIME CG7573
X	20879665	X_20879665_SNP [dm3] X_21008638_SNP [dm6]	C	A	1.359e^-4	0.888	INTERGENIC
2L	14748948	2L_14748948_SNP [dm3] 2L_14748948_SNP [dm6]	G	A	1.359e^-4	0.888	INTERGENIC
2R	7060433	2R_7060433_SNP [dm3] 2R_11172928_SNP [dm6]	A	T	1.361e^-4	0.888	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	10121863	2L_10121863_SNP [dm3] 2L_10121863_SNP [dm6]	A	G	1.372e^-4	0.888	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
3L	11011665	3L_11011665_SNP [dm3] 3L_11018565_SNP [dm6]	T	A	1.374e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10990439	2L_10990439_SNP [dm3] 2L_10990439_SNP [dm6]	C	A	1.375e^-4	0.888	SYNONYMOUS_CODING CG16833 INTRON CG16833	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11748616	2L_11748616_SNP [dm3] 2L_11748616_SNP [dm6]	C	T	1.376e^-4	0.888	INTERGENIC
2L	12021729	2L_12021729_SNP [dm3] 2L_12021729_SNP [dm6]	C	A	1.383e^-4	0.888	UPSTREAM CG6734 INTERGENIC
3R	20332036	3R_20332036_SNP [dm3] 3R_24506314_SNP [dm6]	A	G	1.390e^-4	0.888	INTERGENIC
3L	14175098	3L_14175098_SNP [dm3] 3L_14181998_SNP [dm6]	C	T	1.390e^-4	0.888	INTERGENIC
2R	7060462	2R_7060462_SNP [dm3] 2R_11172957_SNP [dm6]	A	C	1.402e^-4	0.888	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	20955255	3R_20955255_SNP [dm3] 3R_25129533_SNP [dm6]	T	C	1.408e^-4	0.888	SYNONYMOUS_CODING Clbn
2R	1670624	2R_1670624_SNP [dm3] 2R_5783119_SNP [dm6]	A	C	1.410e^-4	0.888	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl transposable element FlyBase
3R	14108603	3R_14108603_SNP [dm3] 3R_18282881_SNP [dm6]	T	A	1.410e^-4	0.888	UTR_3_PRIME eIF-1A UPSTREAM CG8064 DOWNSTREAM CG14312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	16872642	3R_16872642_SNP [dm3] 3R_21046920_SNP [dm6]	G	A	1.436e^-4	0.888	NON_SYNONYMOUS_CODING CG31207 DOWNSTREAM CG7079
2L	21731620	2L_21731620_INS [dm3] 2L_21731620_INS [dm6]	G	GG	1.436e^-4	0.888	INTERGENIC	transposable element FlyBase
3L	8071667	3L_8071667_SNP [dm3] 3L_8078567_SNP [dm6]	T	G	1.440e^-4	0.888	INTRON Ect4	TF binding site mE1_TFBS_Kr
3R	14033302	3R_14033302_SNP [dm3] 3R_18207580_SNP [dm6]	T	G	1.440e^-4	0.888	INTRON CG7985
X	8746297	X_8746297_SNP [dm3] X_8852264_SNP [dm6]	G	C	1.444e^-4	0.888	INTRON CG12075
X	14498857	X_14498857_SNP [dm3] X_14604824_SNP [dm6]	G	A	1.445e^-4	0.888	NON_SYNONYMOUS_CODING NetA SYNONYMOUS_CODING NetA
2L	14933398	2L_14933398_SNP [dm3] 2L_14933398_SNP [dm6]	A	G	1.455e^-4	0.888	INTRON CG42313
2R	1714435	2R_1714435_SNP [dm3] 2R_5826930_SNP [dm6]	C	T	1.457e^-4	0.888	INTRON dpr12
2R	18733182	2R_18733182_SNP [dm3] 2R_22845659_SNP [dm6]	A	T	1.459e^-4	0.888	UPSTREAM CG3649 INTERGENIC
2R	6727055	2R_6727055_SNP [dm3] 2R_10839550_SNP [dm6]	C	T	1.460e^-4	0.888	UTR_3_PRIME CG30015 UPSTREAM CG7686
X	8998449	X_8998449_SNP [dm3] X_9104416_SNP [dm6]	A	G	1.464e^-4	0.888	UTR_3_PRIME Bx42 UPSTREAM CG7766	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13476866	2L_13476866_SNP [dm3] 2L_13476866_SNP [dm6]	A	C	1.476e^-4	0.888	INTRON CG42784
X	20926836	X_20926836_SNP [dm3] X_21055809_SNP [dm6]	A	T	1.491e^-4	0.888	INTRON bves	TF binding site BDTNP1_TFBS_dl
X	5719935	X_5719935_SNP [dm3] X_5825902_SNP [dm6]	G	A	1.493e^-4	0.888	INTRON CG15765
3L	2354040	3L_2354040_SNP [dm3] 3L_2354040_SNP [dm6]	G	T	1.498e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
X	17590810	X_17590810_SNP [dm3] X_17696777_SNP [dm6]	G	C	1.498e^-4	0.888	INTRON chas
2L	6325883	2L_6325883_SNP [dm3] 2L_6325883_SNP [dm6]	G	A	1.501e^-4	0.888	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20541876	2L_20541876_DEL [dm3] 2L_20541876_DEL [dm6]	CACCCGCCAC	C	1.509e^-4	0.888	INTERGENIC
3R	21317534	3R_21317534_SNP [dm3] 3R_25491812_SNP [dm6]	C	G	1.509e^-4	0.888	SYNONYMOUS_CODING CG5112 UPSTREAM Dhap-at EXON CR44179	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13367501	3L_13367501_SNP [dm3] 3L_13374401_SNP [dm6]	A	C	1.509e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5322799	3L_5322799_INS [dm3] 3L_5329699_INS [dm6]	A	AA	1.513e^-4	0.888	INTERGENIC
3L	14383007	3L_14383007_SNP [dm3] 3L_14389907_SNP [dm6]	A	G	1.518e^-4	0.888	INTERGENIC
3L	6064958	3L_6064958_SNP [dm3] 3L_6071858_SNP [dm6]	T	A	1.555e^-4	0.888	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
3R	17718833	3R_17718833_SNP [dm3] 3R_21893111_SNP [dm6]	A	T	1.574e^-4	0.888	INTRON CG6678
3R	19806505	3R_19806505_SNP [dm3] 3R_23980783_SNP [dm6]	G	C	1.579e^-4	0.888	NON_SYNONYMOUS_CODING CG31140 UTR_3_PRIME CG31140 INTRON CG31140
3R	25226910	3R_25226910_SNP [dm3] 3R_29401188_SNP [dm6]	C	T	1.581e^-4	0.888	INTRON Ptp99A	TF binding site mE1_TFBS_inv
2L	1978366	2L_1978366_SNP [dm3] 2L_1978366_SNP [dm6]	A	G	1.582e^-4	0.888	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	933676	2R_933676_SNP [dm3] 2R_5046171_SNP [dm6]	C	G	1.591e^-4	0.888	INTERGENIC	transposable element FlyBase
2R	933710	2R_933710_SNP [dm3] 2R_5046205_SNP [dm6]	C	T	1.591e^-4	0.888	INTERGENIC	transposable element FlyBase
X	16618406	X_16618406_INS [dm3] X_16724373_INS [dm6]	A	AA	1.597e^-4	0.888	INTRON CG32572	TF binding site mE1_TFBS_HSA
2R	10829722	2R_10829722_SNP [dm3] 2R_14942217_SNP [dm6]	A	G	1.602e^-4	0.888	UPSTREAM CG10257 INTERGENIC
2L	12021731	2L_12021731_SNP [dm3] 2L_12021731_SNP [dm6]	C	G	1.617e^-4	0.888	UPSTREAM CG6734 INTERGENIC
3R	23648977	3R_23648977_SNP [dm3] 3R_27823255_SNP [dm6]	A	T	1.630e^-4	0.888	INTRON CG34353
3R	23649030	3R_23649030_DEL [dm3] 3R_27823308_DEL [dm6]	TAATT	C	1.630e^-4	0.888	INTRON CG34353
2L	5960691	2L_5960691_SNP [dm3] 2L_5960691_SNP [dm6]	G	T	1.633e^-4	0.888	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2R	12547135	2R_12547135_SNP [dm3] 2R_16659630_SNP [dm6]	C	T	1.634e^-4	0.888	UPSTREAM Picot INTRON Picot
2R	6275262	2R_6275262_SNP [dm3] 2R_10387757_SNP [dm6]	A	T	1.638e^-4	0.888	INTRON CG42732
2L	19367141	2L_19367141_SNP [dm3] 2L_19367141_SNP [dm6]	A	C	1.648e^-4	0.888	INTERGENIC
3R	26948525	3R_26948525_SNP [dm3] 3R_31122803_SNP [dm6]	A	G	1.653e^-4	0.888	SYNONYMOUS_CODING Prosalpha3T
2R	6310034	2R_6310034_SNP [dm3] 2R_10422529_SNP [dm6]	T	G	1.655e^-4	0.888	NON_SYNONYMOUS_CODING CG33474 UPSTREAM CG11825 INTRON CG11825	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	1878390	X_1878390_SNP [dm3] X_1984357_SNP [dm6]	G	C	1.666e^-4	0.888	INTRON Hr4
3L	11574918	3L_11574918_SNP [dm3] 3L_11581818_SNP [dm6]	A	T	1.678e^-4	0.888	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
2R	15388170	2R_15388170_SNP [dm3] 2R_19500665_SNP [dm6]	G	A	1.686e^-4	0.888	DOWNSTREAM CG15120 INTRON CG16926
3R	14330266	3R_14330266_SNP [dm3] 3R_18504544_SNP [dm6]	A	T	1.687e^-4	0.888	UPSTREAM fru INTRON fru
3L	17398078	3L_17398078_SNP [dm3] 3L_17404978_SNP [dm6]	T	A	1.687e^-4	0.888	UPSTREAM blot INTRON blot	TF binding site mE1_TFBS_HSA
2R	6450798	2R_6450798_SNP [dm3] 2R_10563293_SNP [dm6]	A	G	1.690e^-4	0.888	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8043037	2L_8043037_DEL [dm3] 2L_8043037_DEL [dm6]	AACTTAGTACAGAA...	A	1.691e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1585839	2R_1585839_SNP [dm3] 2R_5698334_SNP [dm6]	C	T	1.693e^-4	0.888	UPSTREAM CG17337 INTRON CG17337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14207262	3R_14207262_SNP [dm3] 3R_18381540_SNP [dm6]	G	T	1.693e^-4	0.888	UPSTREAM CG7675 DOWNSTREAM CG14309 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	23509875	3R_23509875_SNP [dm3] 3R_27684153_SNP [dm6]	G	T	1.699e^-4	0.888	INTERGENIC
3R	9965668	3R_9965668_SNP [dm3] 3R_14139946_SNP [dm6]	A	G	1.714e^-4	0.888	INTERGENIC
2L	8043071	2L_8043071_SNP [dm3] 2L_8043071_SNP [dm6]	A	G	1.721e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17313526	2R_17313526_SNP [dm3] 2R_21426021_SNP [dm6]	G	C	1.723e^-4	0.888	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8274222	3L_8274222_SNP [dm3] 3L_8281122_SNP [dm6]	G	A	1.724e^-4	0.888	UTR_3_PRIME Dscam4
X	5985665	X_5985665_SNP [dm3] X_6091632_SNP [dm6]	G	A	1.728e^-4	0.888	SPLICE_SITE_ACCEPTOR Nep1 UPSTREAM Nep1 & 1 other DOWNSTREAM CR44959 INTRON Nep1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2061710	2L_2061710_SNP [dm3] 2L_2061710_SNP [dm6]	T	A	1.732e^-4	0.888	INTRON dpr3
2L	16123016	2L_16123016_SNP [dm3] 2L_16123016_SNP [dm6]	C	A	1.733e^-4	0.888	INTERGENIC
3R	14816223	3R_14816223_SNP [dm3] 3R_18990501_SNP [dm6]	A	T	1.735e^-4	0.888	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18726209	2R_18726209_SNP [dm3] 2R_22838686_SNP [dm6]	G	A	1.735e^-4	0.888	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5841137	2L_5841137_SNP [dm3] 2L_5841137_SNP [dm6]	A	C	1.743e^-4	0.888	INTRON TrissinR
3L	20830759	3L_20830759_SNP [dm3] 3L_20837659_SNP [dm6]	C	G	1.744e^-4	0.888	UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
2L	10085947	2L_10085947_SNP [dm3] 2L_10085947_SNP [dm6]	G	C	1.747e^-4	0.888	INTRON CG44153
2R	12543497	2R_12543497_SNP [dm3] 2R_16655992_SNP [dm6]	G	T	1.748e^-4	0.888	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
2L	5841254	2L_5841254_SNP [dm3] 2L_5841254_SNP [dm6]	C	A	1.761e^-4	0.888	INTRON TrissinR
3R	24969529	3R_24969529_SNP [dm3] 3R_29143807_SNP [dm6]	A	C	1.765e^-4	0.888	SYNONYMOUS_CODING CG14516
2R	6719462	2R_6719462_SNP [dm3] 2R_10831957_SNP [dm6]	A	G	1.766e^-4	0.888	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10025003	X_10025003_SNP [dm3] X_10130970_SNP [dm6]	T	A	1.769e^-4	0.888	INTRON CR44894 & 1 other
3L	2229874	3L_2229874_SNP [dm3] 3L_2229874_SNP [dm6]	C	A	1.775e^-4	0.888	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12021757	2L_12021757_SNP [dm3] 2L_12021757_SNP [dm6]	C	A	1.782e^-4	0.888	UPSTREAM CG6734 INTERGENIC
X	14428958	X_14428958_SNP [dm3] X_14534925_SNP [dm6]	G	A	1.791e^-4	0.888	INTERGENIC
3L	7390291	3L_7390291_SNP [dm3] 3L_7397191_SNP [dm6]	A	C	1.796e^-4	0.888	SPLICE_SITE_REGION CG32379 SYNONYMOUS_CODING CG32379
3L	11008919	3L_11008919_SNP [dm3] 3L_11015819_SNP [dm6]	A	G	1.802e^-4	0.888	INTERGENIC
2R	933730	2R_933730_SNP [dm3] 2R_5046225_SNP [dm6]	A	G	1.803e^-4	0.888	INTERGENIC	transposable element FlyBase
2R	1714451	2R_1714451_SNP [dm3] 2R_5826946_SNP [dm6]	T	A	1.814e^-4	0.888	INTRON dpr12
3R	10881186	3R_10881186_SNP [dm3] 3R_15055464_SNP [dm6]	A	G	1.815e^-4	0.888	UTR_3_PRIME dpr9
2L	14894721	2L_14894721_SNP [dm3] 2L_14894721_SNP [dm6]	C	T	1.817e^-4	0.888	INTERGENIC
3L	9717112	3L_9717112_SNP [dm3] 3L_9724012_SNP [dm6]	G	A	1.820e^-4	0.888	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10675346	2R_10675346_SNP [dm3] 2R_14787841_SNP [dm6]	T	A	1.830e^-4	0.888	INTRON kn	TF binding site BDTNP1_TFBS_da
2R	3516418	2R_3516418_SNP [dm3] 2R_7628913_SNP [dm6]	T	C	1.836e^-4	0.888	UTR_5_PRIME CG43340 INTRON CG43340
2L	8333989	2L_8333989_DEL [dm3] 2L_8333989_DEL [dm6]	TATT	T	1.844e^-4	0.888	INTERGENIC
3R	13372315	3R_13372315_SNP [dm3] 3R_17546593_SNP [dm6]	C	A	1.848e^-4	0.888	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11310821	3L_11310821_SNP [dm3] 3L_11317721_SNP [dm6]	C	T	1.852e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14108601	3R_14108601_SNP [dm3] 3R_18282879_SNP [dm6]	G	A	1.858e^-4	0.888	UTR_3_PRIME eIF-1A UPSTREAM CG8064 DOWNSTREAM CG14312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2228732	3L_2228732_SNP [dm3] 3L_2228732_SNP [dm6]	C	T	1.863e^-4	0.888	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12706833	3L_12706833_SNP [dm3] 3L_12713733_SNP [dm6]	T	C	1.873e^-4	0.888	INTERGENIC
2L	6705370	2L_6705370_SNP [dm3] 2L_6705370_SNP [dm6]	T	A	1.876e^-4	0.888	INTRON Tsp
3R	23540129	3R_23540129_SNP [dm3] 3R_27714407_SNP [dm6]	G	A	1.877e^-4	0.888	INTERGENIC
2R	19198191	2R_19198191_SNP [dm3] 2R_23310668_SNP [dm6]	A	G	1.883e^-4	0.888	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20986529	2L_20986529_SNP [dm3] 2L_20986529_SNP [dm6]	G	A	1.885e^-4	0.888	INTRON CG42238
2R	3733917	2R_3733917_SNP [dm3] 2R_7846412_SNP [dm6]	T	A	1.887e^-4	0.888	INTRON Dgk
2L	22187105	2L_22187105_SNP [dm3] 2L_22187105_SNP [dm6]	T	G	1.889e^-4	0.888	INTERGENIC
3R	26484934	3R_26484934_SNP [dm3] 3R_30659212_SNP [dm6]	C	T	1.889e^-4	0.888	INTERGENIC
3R	27640949	3R_27640949_SNP [dm3] 3R_31815227_SNP [dm6]	A	T	1.893e^-4	0.888	INTRON RhoGAP100F
2R	3729217	2R_3729217_SNP [dm3] 2R_7841712_SNP [dm6]	G	C	1.898e^-4	0.888	INTRON Dgk
2R	8289020	2R_8289020_SNP [dm3] 2R_12401515_SNP [dm6]	C	T	1.900e^-4	0.888	UPSTREAM Cpr49Ae INTERGENIC
2R	7427738	2R_7427738_SNP [dm3] 2R_11540233_SNP [dm6]	T	A	1.901e^-4	0.888	INTERGENIC
2R	1913005	2R_1913005_SNP [dm3] 2R_6025500_SNP [dm6]	T	A	1.918e^-4	0.888	DOWNSTREAM SCAP INTERGENIC
2L	10083417	2L_10083417_SNP [dm3] 2L_10083417_SNP [dm6]	A	C	1.938e^-4	0.888	INTRON CG44153
3L	8140060	3L_8140060_SNP [dm3] 3L_8146960_SNP [dm6]	G	T	1.945e^-4	0.888	INTRON CG13676
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.947e^-4	0.888	INTRON CG7777
X	1237610	X_1237610_INS [dm3] X_1343577_INS [dm6]	A	AAAGTAGTAAA...	1.948e^-4	0.888	INTRON CG11412	TF binding site mE1_TFBS_sens
X	1237626	X_1237626_SNP [dm3] X_1343593_SNP [dm6]	T	C	1.948e^-4	0.888	INTRON CG11412	TF binding site mE1_TFBS_sens
3R	10984918	3R_10984918_SNP [dm3] 3R_15159196_SNP [dm6]	T	G	1.951e^-4	0.888	INTRON Gyc88E
3L	14760327	3L_14760327_SNP [dm3] 3L_14767227_SNP [dm6]	A	G	1.961e^-4	0.888	UTR_3_PRIME CG9384 DOWNSTREAM CG17173
3R	25121938	3R_25121938_SNP [dm3] 3R_29296216_SNP [dm6]	A	C	1.964e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
2L	8043081	2L_8043081_SNP [dm3] 2L_8043081_SNP [dm6]	G	A	1.978e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19791859	2R_19791859_SNP [dm3] 2R_23904336_SNP [dm6]	A	G	1.987e^-4	0.888	NON_SYNONYMOUS_CODING CG13562 DOWNSTREAM Lpt & 1 other
3R	26948510	3R_26948510_SNP [dm3] 3R_31122788_SNP [dm6]	G	T	1.988e^-4	0.888	SYNONYMOUS_CODING Prosalpha3T
2L	15177549	2L_15177549_SNP [dm3] 2L_15177549_SNP [dm6]	C	T	1.988e^-4	0.888	INTRON CG4168
3L	17398422	3L_17398422_SNP [dm3] 3L_17405322_SNP [dm6]	A	G	1.992e^-4	0.888	UPSTREAM blot INTRON blot
3L	1020320	3L_1020320_SNP [dm3] 3L_1020320_SNP [dm6]	G	A	1.995e^-4	0.888	INTRON trio
2L	8750844	2L_8750844_DEL [dm3] 2L_8750844_DEL [dm6]	AAAGG	A	2.003e^-4	0.888	DOWNSTREAM CG45307 INTERGENIC
2R	16814187	2R_16814187_SNP [dm3] 2R_20926682_SNP [dm6]	C	T	2.003e^-4	0.888	INTRON Rx
3R	10981996	3R_10981996_SNP [dm3] 3R_15156274_SNP [dm6]	A	T	2.003e^-4	0.888	INTRON Gyc88E
3R	10981998	3R_10981998_SNP [dm3] 3R_15156276_SNP [dm6]	G	T	2.003e^-4	0.888	INTRON Gyc88E
3R	10981999	3R_10981999_SNP [dm3] 3R_15156277_SNP [dm6]	T	C	2.003e^-4	0.888	INTRON Gyc88E
3R	10982002	3R_10982002_SNP [dm3] 3R_15156280_SNP [dm6]	G	A	2.003e^-4	0.888	INTRON Gyc88E
3R	10982005	3R_10982005_SNP [dm3] 3R_15156283_SNP [dm6]	C	A	2.003e^-4	0.888	INTRON Gyc88E
3R	10982009	3R_10982009_SNP [dm3] 3R_15156287_SNP [dm6]	G	A	2.003e^-4	0.888	INTRON Gyc88E
3R	10982011	3R_10982011_SNP [dm3] 3R_15156289_SNP [dm6]	T	A	2.003e^-4	0.888	INTRON Gyc88E
2R	18963210	2R_18963210_SNP [dm3] 2R_23075687_SNP [dm6]	A	C	2.013e^-4	0.888	SYNONYMOUS_CODING CG3085 UPSTREAM Fib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16734138	2R_16734138_SNP [dm3] 2R_20846633_SNP [dm6]	T	C	2.022e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14914950	2L_14914950_SNP [dm3] 2L_14914950_SNP [dm6]	T	C	2.029e^-4	0.888	INTRON CG42313
3R	27643432	3R_27643432_SNP [dm3] 3R_31817710_SNP [dm6]	A	G	2.046e^-4	0.888	INTRON RhoGAP100F
3R	27643470	3R_27643470_SNP [dm3] 3R_31817748_SNP [dm6]	T	G	2.046e^-4	0.888	INTRON RhoGAP100F
3R	5432834	3R_5432834_SNP [dm3] 3R_9607112_SNP [dm6]	C	G	2.054e^-4	0.888	INTRON CG8312
2R	1910681	2R_1910681_SNP [dm3] 2R_6023176_SNP [dm6]	C	G	2.055e^-4	0.888	UPSTREAM dream INTERGENIC	TF binding site mE1_TFBS_cad
X	2616081	X_2616081_SNP [dm3] X_2722048_SNP [dm6]	G	A	2.064e^-4	0.888	SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9790529	2R_9790529_SNP [dm3] 2R_13903024_SNP [dm6]	A	G	2.072e^-4	0.888	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
X	11232487	X_11232487_SNP [dm3] X_11338454_SNP [dm6]	C	A	2.079e^-4	0.888	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2R	7669760	2R_7669760_SNP [dm3] 2R_11782255_SNP [dm6]	T	A	2.085e^-4	0.888	INTRON ths
X	5990490	X_5990490_SNP [dm3] X_6096457_SNP [dm6]	A	G	2.092e^-4	0.888	SYNONYMOUS_CODING Nep1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11574893	3L_11574893_SNP [dm3] 3L_11581793_SNP [dm6]	T	C	2.094e^-4	0.888	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
2L	10083410	2L_10083410_SNP [dm3] 2L_10083410_SNP [dm6]	G	T	2.094e^-4	0.888	INTRON CG44153
2L	11212190	2L_11212190_SNP [dm3] 2L_11212190_SNP [dm6]	T	A	2.110e^-4	0.888	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5125283	3L_5125283_SNP [dm3] 3L_5132183_SNP [dm6]	C	A	2.132e^-4	0.888	DOWNSTREAM CG15213 & 1 other INTERGENIC
3L	6701867	3L_6701867_SNP [dm3] 3L_6708767_SNP [dm6]	G	A	2.134e^-4	0.888	SYNONYMOUS_CODING CG8519
2L	12021619	2L_12021619_SNP [dm3] 2L_12021619_SNP [dm6]	C	T	2.136e^-4	0.888	UPSTREAM CG6734 INTERGENIC
2R	3519478	2R_3519478_SNP [dm3] 2R_7631973_SNP [dm6]	C	T	2.146e^-4	0.888	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	2422633	3L_2422633_DEL [dm3] 3L_2422633_DEL [dm6]	ATAA	A	2.152e^-4	0.888	INTRON CG45186
2R	8519428	2R_8519428_SNP [dm3] 2R_12631923_SNP [dm6]	T	A	2.156e^-4	0.888	UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15161119	2L_15161119_SNP [dm3] 2L_15161119_SNP [dm6]	C	T	2.158e^-4	0.888	UPSTREAM CR44771 DOWNSTREAM CG4168 & 1 other INTERGENIC
2L	12021778	2L_12021778_SNP [dm3] 2L_12021778_SNP [dm6]	T	C	2.158e^-4	0.888	UPSTREAM CG6734 INTERGENIC
3L	3682848	3L_3682848_SNP [dm3] 3L_3682848_SNP [dm6]	G	A	2.161e^-4	0.888	INTERGENIC
2L	11302723	2L_11302723_SNP [dm3] 2L_11302723_SNP [dm6]	A	T	2.166e^-4	0.888	INTERGENIC
X	18427542	X_18427542_SNP [dm3] X_18533509_SNP [dm6]	C	T	2.173e^-4	0.888	INTRON Bx	TF binding site BDTNP1_TFBS_dl
3L	4784082	3L_4784082_SNP [dm3] 3L_4784082_SNP [dm6]	G	T	2.177e^-4	0.888	INTRON RhoGEF64C
2L	18228703	2L_18228703_SNP [dm3] 2L_18228703_SNP [dm6]	T	A	2.178e^-4	0.888	INTRON CG42750
3R	20551031	3R_20551031_SNP [dm3] 3R_24725309_SNP [dm6]	T	C	2.193e^-4	0.888	INTRON tok
X	9930271	X_9930271_SNP [dm3] X_10036238_SNP [dm6]	G	A	2.195e^-4	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	6489465	X_6489465_SNP [dm3] X_6595432_SNP [dm6]	A	G	2.197e^-4	0.888	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3L	15312622	3L_15312622_SNP [dm3] 3L_15319522_SNP [dm6]	A	G	2.201e^-4	0.888	INTERGENIC
2L	8333478	2L_8333478_SNP [dm3] 2L_8333478_SNP [dm6]	T	G	2.201e^-4	0.888	DOWNSTREAM CG14275 INTERGENIC
X	9692350	X_9692350_DEL [dm3] X_9798317_DEL [dm6]	ATA	A	2.203e^-4	0.888	INTRON CG32698
2R	4539305	2R_4539305_SNP [dm3] 2R_8651800_SNP [dm6]	C	A	2.204e^-4	0.888	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	8043084	2L_8043084_SNP [dm3] 2L_8043084_SNP [dm6]	A	T	2.207e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8751809	2L_8751809_SNP [dm3] 2L_8751809_SNP [dm6]	C	A	2.209e^-4	0.888	UTR_3_PRIME CG45307 UPSTREAM CG12438
2R	14455077	2R_14455077_SNP [dm3] 2R_18567572_SNP [dm6]	T	A	2.226e^-4	0.888	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10984939	3R_10984939_SNP [dm3] 3R_15159217_SNP [dm6]	A	G	2.242e^-4	0.888	INTRON Gyc88E
2R	5865056	2R_5865056_SNP [dm3] 2R_9977551_SNP [dm6]	A	G	2.261e^-4	0.888	EXON CR43948	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16814180	2R_16814180_SNP [dm3] 2R_20926675_SNP [dm6]	G	A	2.267e^-4	0.888	INTRON Rx
2R	10674345	2R_10674345_SNP [dm3] 2R_14786840_SNP [dm6]	T	C	2.281e^-4	0.888	INTRON kn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12021680	2L_12021680_SNP [dm3] 2L_12021680_SNP [dm6]	T	C	2.287e^-4	0.888	UPSTREAM CG6734 INTERGENIC
2R	4559133	2R_4559133_SNP [dm3] 2R_8671628_SNP [dm6]	G	A	2.288e^-4	0.888	UPSTREAM Acsl INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8556991	3R_8556991_SNP [dm3] 3R_12731269_SNP [dm6]	T	A	2.292e^-4	0.888	INTERGENIC
3R	15108032	3R_15108032_SNP [dm3] 3R_19282310_SNP [dm6]	G	A	2.294e^-4	0.888	INTERGENIC
2L	13476848	2L_13476848_DEL [dm3] 2L_13476848_DEL [dm6]	CT	C	2.305e^-4	0.888	INTRON CG42784
3R	16810940	3R_16810940_SNP [dm3] 3R_20985218_SNP [dm6]	T	C	2.308e^-4	0.888	UPSTREAM Calx INTRON Calx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6249182	2L_6249182_SNP [dm3] 2L_6249182_SNP [dm6]	G	A	2.308e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10829726	2R_10829726_SNP [dm3] 2R_14942221_SNP [dm6]	T	A	2.309e^-4	0.888	UPSTREAM CG10257 INTERGENIC
3L	4901067	3L_4901067_SNP [dm3] 3L_4901067_SNP [dm6]	T	C	2.310e^-4	0.888	DOWNSTREAM CG13704 INTERGENIC
2L	16123032	2L_16123032_SNP [dm3] 2L_16123032_SNP [dm6]	C	G	2.311e^-4	0.888	INTERGENIC
3R	14671241	3R_14671241_SNP [dm3] 3R_18845519_SNP [dm6]	C	T	2.316e^-4	0.888	INTRON CG18208
3L	1472110	3L_1472110_SNP [dm3] 3L_1472110_SNP [dm6]	T	C	2.318e^-4	0.888	UPSTREAM CG32319 INTRON Ptp61F
3R	18374092	3R_18374092_SNP [dm3] 3R_22548370_SNP [dm6]	G	A	2.326e^-4	0.888	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6056230	3R_6056230_SNP [dm3] 3R_10230508_SNP [dm6]	T	A	2.327e^-4	0.888	INTRON CG42795
X	4685914	X_4685914_DEL [dm3] X_4791881_DEL [dm6]	TAT	T	2.333e^-4	0.888	INTERGENIC
3L	5275835	3L_5275835_SNP [dm3] 3L_5282735_SNP [dm6]	T	C	2.340e^-4	0.888	INTERGENIC
3L	12961014	3L_12961014_SNP [dm3] 3L_12967914_SNP [dm6]	A	G	2.346e^-4	0.888	UPSTREAM Or69a INTERGENIC
2L	15161110	2L_15161110_SNP [dm3] 2L_15161110_SNP [dm6]	G	A	2.354e^-4	0.888	UPSTREAM CR44771 DOWNSTREAM CG4168 & 1 other INTERGENIC
2L	10155581	2L_10155581_SNP [dm3] 2L_10155581_SNP [dm6]	T	A	2.355e^-4	0.888	UTR_3_PRIME CG4839 DOWNSTREAM CG4839 INTRON CG44153
3R	17237969	3R_17237969_SNP [dm3] 3R_21412247_SNP [dm6]	T	G	2.360e^-4	0.888	INTRON lbl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10487970	3L_10487970_SNP [dm3] 3L_10494870_SNP [dm6]	A	G	2.366e^-4	0.888	INTRON A2bp1
2L	14980689	2L_14980689_DEL [dm3] 2L_14980689_DEL [dm6]	AA	A	2.370e^-4	0.888	INTRON mol
2L	12040030	2L_12040030_SNP [dm3] 2L_12040030_SNP [dm6]	T	C	2.386e^-4	0.888	SYNONYMOUS_CODING CG6766	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16149255	2L_16149255_SNP [dm3] 2L_16149255_SNP [dm6]	T	A	2.387e^-4	0.888	INTERGENIC
X	14755174	X_14755174_SNP [dm3] X_14861141_SNP [dm6]	C	T	2.388e^-4	0.888	INTRON Flo2
2R	14075112	2R_14075112_SNP [dm3] 2R_18187607_SNP [dm6]	C	T	2.412e^-4	0.888	UPSTREAM CG14499 INTRON CG33958
3L	337416	3L_337416_SNP [dm3] 3L_337416_SNP [dm6]	T	A	2.414e^-4	0.888	INTRON Ptpmeg & 1 other
X	13370802	X_13370802_SNP [dm3] X_13476769_SNP [dm6]	T	C	2.419e^-4	0.888	INTRON Neto
2L	8043094	2L_8043094_SNP [dm3] 2L_8043094_SNP [dm6]	C	A	2.422e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19223699	2R_19223699_SNP [dm3] 2R_23336176_SNP [dm6]	C	T	2.430e^-4	0.888	INTERGENIC
3R	4719851	3R_4719851_SNP [dm3] 3R_8894129_SNP [dm6]	G	T	2.430e^-4	0.888	INTRON pyd
2R	19223640	2R_19223640_INS [dm3] 2R_23336117_INS [dm6]	G	GGGG	2.437e^-4	0.888	INTERGENIC
2L	14749075	2L_14749075_SNP [dm3] 2L_14749075_SNP [dm6]	A	G	2.438e^-4	0.888	INTERGENIC
3L	6022466	3L_6022466_SNP [dm3] 3L_6029366_SNP [dm6]	T	C	2.441e^-4	0.888	INTERGENIC
3R	15108761	3R_15108761_DEL [dm3] 3R_19283039_DEL [dm6]	TG	T	2.445e^-4	0.888	INTERGENIC
2R	6450791	2R_6450791_SNP [dm3] 2R_10563286_SNP [dm6]	A	G	2.446e^-4	0.888	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19053061	2R_19053061_SNP [dm3] 2R_23165538_SNP [dm6]	T	C	2.448e^-4	0.888	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3R	15995537	3R_15995537_SNP [dm3] 3R_20169815_SNP [dm6]	A	G	2.449e^-4	0.888	INTRON CG5023
2L	1989030	2L_1989030_SNP [dm3] 2L_1989030_SNP [dm6]	A	T	2.458e^-4	0.888	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
2R	18733169	2R_18733169_SNP [dm3] 2R_22845646_SNP [dm6]	T	G	2.459e^-4	0.888	UPSTREAM CG3649 INTERGENIC
2L	15291528	2L_15291528_SNP [dm3] 2L_15291528_SNP [dm6]	T	C	2.460e^-4	0.888	NON_SYNONYMOUS_CODING CG15260 UPSTREAM ms_2_35Ci
3R	18283614	3R_18283614_SNP [dm3] 3R_22457892_SNP [dm6]	T	A	2.461e^-4	0.888	INTRON CG34376
2L	16870498	2L_16870498_SNP [dm3] 2L_16870498_SNP [dm6]	T	C	2.463e^-4	0.888	EXON CR31781	TF binding site mE1_TFBS_cad
X	11235898	X_11235898_SNP [dm3] X_11341865_SNP [dm6]	T	A	2.464e^-4	0.888	INTRON CG34348	TF binding site BDTNP1_TFBS_dl
2R	18724561	2R_18724561_SNP [dm3] 2R_22837038_SNP [dm6]	G	T	2.464e^-4	0.888	UPSTREAM CG9825 DOWNSTREAM CG12490 INTERGENIC
3L	13019636	3L_13019636_SNP [dm3] 3L_13026536_SNP [dm6]	G	C	2.465e^-4	0.888	UPSTREAM Zmynd10 INTERGENIC
2L	14900534	2L_14900534_SNP [dm3] 2L_14900534_SNP [dm6]	T	G	2.468e^-4	0.888	INTERGENIC
3L	13873776	3L_13873776_SNP [dm3] 3L_13880676_SNP [dm6]	A	C	2.475e^-4	0.888	INTRON dysc & 1 other
2L	15819549	2L_15819549_SNP [dm3] 2L_15819549_SNP [dm6]	C	G	2.477e^-4	0.888	INTERGENIC
3R	10982008	3R_10982008_SNP [dm3] 3R_15156286_SNP [dm6]	T	A	2.495e^-4	0.888	INTRON Gyc88E
2R	10702986	2R_10702986_INS [dm3] 2R_14815481_INS [dm6]	T	TGA	2.504e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18731150	X_18731150_INS [dm3] X_18837117_INS [dm6]	T	TGCGGAGT	2.507e^-4	0.888	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26485932	3R_26485932_SNP [dm3] 3R_30660210_SNP [dm6]	G	A	2.521e^-4	0.888	INTERGENIC
X	12137327	X_12137327_SNP [dm3] X_12243294_SNP [dm6]	C	G	2.528e^-4	0.888	INTRON Ten-a
2L	18898638	2L_18898638_SNP [dm3] 2L_18898638_SNP [dm6]	A	G	2.532e^-4	0.888	DOWNSTREAM CR44739 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19599842	X_19599842_SNP [dm3] X_19705809_SNP [dm6]	C	T	2.533e^-4	0.888	SYNONYMOUS_CODING CG14230 DOWNSTREAM meso18E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15027225	2L_15027225_SNP [dm3] 2L_15027225_SNP [dm6]	A	G	2.535e^-4	0.888	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	16574556	2R_16574556_SNP [dm3] 2R_20687051_SNP [dm6]	C	T	2.536e^-4	0.888	UPSTREAM Gr57a INTERGENIC
3R	20199759	3R_20199759_SNP [dm3] 3R_24374037_SNP [dm6]	A	T	2.553e^-4	0.888	INTRON CG17781	TF binding site mE1_TFBS_chinmo
X	6404021	X_6404021_SNP [dm3] X_6509988_SNP [dm6]	T	G	2.556e^-4	0.888	INTRON CG42340	TF binding site mE1_TFBS_kn
3L	10487667	3L_10487667_SNP [dm3] 3L_10494567_SNP [dm6]	T	C	2.559e^-4	0.888	INTRON A2bp1
3R	9734733	3R_9734733_SNP [dm3] 3R_13909011_SNP [dm6]	T	C	2.563e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	16106398	2L_16106398_SNP [dm3] 2L_16106398_SNP [dm6]	A	C	2.574e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13851092	3R_13851092_SNP [dm3] 3R_18025370_SNP [dm6]	G	A	2.575e^-4	0.888	UTR_3_PRIME CG7794
2R	15198534	2R_15198534_SNP [dm3] 2R_19311029_SNP [dm6]	G	T	2.583e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
X	12255138	X_12255138_SNP [dm3] X_12361105_SNP [dm6]	T	C	2.587e^-4	0.888	INTERGENIC
2L	22115235	2L_22115235_SNP [dm3] 2L_22115235_SNP [dm6]	A	G	2.589e^-4	0.888	INTERGENIC	transposable element FlyBase
2R	592937	2R_592937_SNP [dm3] 2R_4705432_SNP [dm6]	A	G	2.590e^-4	0.888	INTRON Nipped-B	transposable element FlyBase
3L	4784162	3L_4784162_SNP [dm3] 3L_4784162_SNP [dm6]	T	G	2.594e^-4	0.888	INTRON RhoGEF64C
3R	27624737	3R_27624737_SNP [dm3] 3R_31799015_SNP [dm6]	A	T	2.595e^-4	0.888	NON_SYNONYMOUS_CODING Acf1 DOWNSTREAM CG42233
X	1240904	X_1240904_SNP [dm3] X_1346871_SNP [dm6]	A	C	2.599e^-4	0.888	UPSTREAM Tsp2A & 1 other INTRON CG11418 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	10842763	3L_10842763_SNP [dm3] 3L_10849663_SNP [dm6]	C	G	2.602e^-4	0.888	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	12596031	2L_12596031_SNP [dm3] 2L_12596031_SNP [dm6]	T	A	2.608e^-4	0.888	INTRON nub
X	3874796	X_3874796_SNP [dm3] X_3980763_SNP [dm6]	C	T	2.610e^-4	0.888	INTERGENIC
3L	6064964	3L_6064964_SNP [dm3] 3L_6071864_SNP [dm6]	C	A	2.622e^-4	0.888	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
2L	10121106	2L_10121106_SNP [dm3] 2L_10121106_SNP [dm6]	C	A	2.636e^-4	0.888	INTRON CG44153 & 1 other
X	13370787	X_13370787_SNP [dm3] X_13476754_SNP [dm6]	C	T	2.637e^-4	0.888	INTRON Neto
X	17952333	X_17952333_MNP [dm3] X_18058300_MNP [dm6]	TTAT	AATA	2.641e^-4	0.888	INTRON Sh
3R	4705310	3R_4705310_SNP [dm3] 3R_8879588_SNP [dm6]	G	A	2.644e^-4	0.888	INTRON pyd
2L	11375284	2L_11375284_SNP [dm3] 2L_11375284_SNP [dm6]	C	T	2.649e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
X	4272820	X_4272820_SNP [dm3] X_4378787_SNP [dm6]	G	A	2.651e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20788868	3L_20788868_SNP [dm3] 3L_20795768_SNP [dm6]	T	C	2.652e^-4	0.888	UPSTREAM CR43705 DOWNSTREAM CR43706 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22102254	2L_22102254_SNP [dm3] 2L_22102254_SNP [dm6]	T	C	2.654e^-4	0.888	DOWNSTREAM CG31703 INTERGENIC
3R	7320177	3R_7320177_SNP [dm3] 3R_11494455_SNP [dm6]	C	T	2.663e^-4	0.888	INTERGENIC
2L	19247514	2L_19247514_SNP [dm3] 2L_19247514_SNP [dm6]	G	A	2.666e^-4	0.888	INTERGENIC
3L	13094421	3L_13094421_SNP [dm3] 3L_13101321_SNP [dm6]	T	A	2.672e^-4	0.888	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4314618	3L_4314618_SNP [dm3] 3L_4314618_SNP [dm6]	G	C	2.673e^-4	0.888	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
X	21283266	X_21283266_SNP [dm3] X_21412239_SNP [dm6]	T	C	2.680e^-4	0.888	INTERGENIC
2L	12021741	2L_12021741_SNP [dm3] 2L_12021741_SNP [dm6]	A	C	2.685e^-4	0.888	UPSTREAM CG6734 INTERGENIC
2L	11302656	2L_11302656_SNP [dm3] 2L_11302656_SNP [dm6]	C	T	2.688e^-4	0.888	INTERGENIC
2R	13336206	2R_13336206_DEL [dm3] 2R_17448701_DEL [dm6]	TT	T	2.692e^-4	0.888	UTR_3_PRIME mthl3
2R	13772410	2R_13772410_SNP [dm3] 2R_17884905_SNP [dm6]	G	C	2.696e^-4	0.888	INTRON Elk
X	14654505	X_14654505_SNP [dm3] X_14760472_SNP [dm6]	G	C	2.697e^-4	0.888	INTRON CG15890
3R	20281854	3R_20281854_SNP [dm3] 3R_24456132_SNP [dm6]	A	G	2.704e^-4	0.888	INTRON nAChRalpha1
3R	5079856	3R_5079856_SNP [dm3] 3R_9254134_SNP [dm6]	A	C	2.706e^-4	0.888	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_inv
3R	5079857	3R_5079857_SNP [dm3] 3R_9254135_SNP [dm6]	A	C	2.706e^-4	0.888	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_inv
3R	21438045	3R_21438045_SNP [dm3] 3R_25612323_SNP [dm6]	C	T	2.717e^-4	0.888	INTRON Npl4
2L	13354501	2L_13354501_SNP [dm3] 2L_13354501_SNP [dm6]	T	A	2.722e^-4	0.888	UTR_5_PRIME CG9395	TF binding site mE1_TFBS_Trl
3R	26716469	3R_26716469_SNP [dm3] 3R_30890747_SNP [dm6]	A	G	2.723e^-4	0.888	INTERGENIC
2R	11840158	2R_11840158_SNP [dm3] 2R_15952653_SNP [dm6]	C	A	2.731e^-4	0.888	UPSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	12021649	2L_12021649_SNP [dm3] 2L_12021649_SNP [dm6]	T	A	2.736e^-4	0.888	UPSTREAM CG6734 INTERGENIC
3R	10897686	3R_10897686_SNP [dm3] 3R_15071964_SNP [dm6]	G	A	2.747e^-4	0.888	UTR_5_PRIME dpr9	TF binding site mE1_TFBS_cad
3L	10487668	3L_10487668_SNP [dm3] 3L_10494568_SNP [dm6]	G	C	2.784e^-4	0.888	INTRON A2bp1
3R	25121923	3R_25121923_SNP [dm3] 3R_29296201_SNP [dm6]	A	G	2.786e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
X	10018601	X_10018601_SNP [dm3] X_10124568_SNP [dm6]	G	T	2.798e^-4	0.888	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2R	2652796	2R_2652796_SNP [dm3] 2R_6765291_SNP [dm6]	G	T	2.798e^-4	0.888	INTRON Epac	TF binding site mE1_TFBS_cad
3R	25121568	3R_25121568_SNP [dm3] 3R_29295846_SNP [dm6]	C	T	2.808e^-4	0.888	SYNONYMOUS_CODING CG14506
2R	13336270	2R_13336270_SNP [dm3] 2R_17448765_SNP [dm6]	C	T	2.821e^-4	0.888	UTR_3_PRIME mthl3
2L	10990455	2L_10990455_SNP [dm3] 2L_10990455_SNP [dm6]	T	C	2.828e^-4	0.888	NON_SYNONYMOUS_CODING CG16833 INTRON CG16833	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14848049	2R_14848049_DEL [dm3] 2R_18960544_DEL [dm6]	AAAACCCTATATA...	A	2.830e^-4	0.888	INTERGENIC
3R	25121931	3R_25121931_SNP [dm3] 3R_29296209_SNP [dm6]	T	A	2.838e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
2L	6514580	2L_6514580_SNP [dm3] 2L_6514580_SNP [dm6]	G	C	2.850e^-4	0.888	INTRON CG31637
2L	22115236	2L_22115236_SNP [dm3] 2L_22115236_SNP [dm6]	T	G	2.856e^-4	0.888	INTERGENIC	transposable element FlyBase
2L	22059093	2L_22059093_SNP [dm3] 2L_22059093_SNP [dm6]	T	G	2.859e^-4	0.888	INTERGENIC
2R	15124152	2R_15124152_SNP [dm3] 2R_19236647_SNP [dm6]	C	T	2.862e^-4	0.888	SYNONYMOUS_CODING cora
3L	12960953	3L_12960953_SNP [dm3] 3L_12967853_SNP [dm6]	C	A	2.864e^-4	0.888	UPSTREAM Or69a INTERGENIC
2L	7229656	2L_7229656_SNP [dm3] 2L_7229656_SNP [dm6]	A	G	2.870e^-4	0.888	SYNONYMOUS_CODING Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7229704	2L_7229704_SNP [dm3] 2L_7229704_SNP [dm6]	C	T	2.870e^-4	0.888	SYNONYMOUS_CODING Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21284310	X_21284310_SNP [dm3] X_21413283_SNP [dm6]	T	C	2.872e^-4	0.888	INTERGENIC
2R	3771380	2R_3771380_SNP [dm3] 2R_7883875_SNP [dm6]	G	A	2.889e^-4	0.888	INTRON Dgk
3L	2354012	3L_2354012_SNP [dm3] 3L_2354012_SNP [dm6]	G	A	2.893e^-4	0.888	INTERGENIC
3R	14593831	3R_14593831_SNP [dm3] 3R_18768109_SNP [dm6]	G	T	2.896e^-4	0.888	INTRON CG7720
3R	10658747	3R_10658747_SNP [dm3] 3R_14833025_SNP [dm6]	T	C	2.904e^-4	0.888	INTRON btsz
2L	17408734	2L_17408734_SNP [dm3] 2L_17408734_SNP [dm6]	C	T	2.908e^-4	0.888	NON_SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2L	8334022	2L_8334022_SNP [dm3] 2L_8334022_SNP [dm6]	C	T	2.908e^-4	0.888	INTERGENIC
3R	23642651	3R_23642651_SNP [dm3] 3R_27816929_SNP [dm6]	G	A	2.911e^-4	0.888	INTRON CG34353
3R	23647674	3R_23647674_SNP [dm3] 3R_27821952_SNP [dm6]	C	T	2.911e^-4	0.888	INTRON CG34353
3R	11825756	3R_11825756_SNP [dm3] 3R_16000034_SNP [dm6]	C	T	2.919e^-4	0.888	SYNONYMOUS_CODING srp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6274247	2R_6274247_SNP [dm3] 2R_10386742_SNP [dm6]	A	C	2.920e^-4	0.888	INTRON CG42732
2L	14754451	2L_14754451_DEL [dm3] 2L_14754451_DEL [dm6]	GTGCTGACAAATTCAA...	G	2.922e^-4	0.888	INTERGENIC
3R	23540058	3R_23540058_SNP [dm3] 3R_27714336_SNP [dm6]	G	A	2.927e^-4	0.888	INTERGENIC
X	22235724	X_22235724_SNP [dm3] X_22833888_SNP [dm6]	G	T	2.932e^-4	0.888	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	15108638	3R_15108638_DEL [dm3] 3R_19282916_DEL [dm6]	TGGAATT	T	2.937e^-4	0.888	INTERGENIC
3R	25277176	3R_25277176_SNP [dm3] 3R_29451454_SNP [dm6]	A	T	2.939e^-4	0.888	INTRON Ptp99A
3L	13024184	3L_13024184_SNP [dm3] 3L_13031084_SNP [dm6]	A	G	2.940e^-4	0.888	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	22115261	2L_22115261_SNP [dm3] 2L_22115261_SNP [dm6]	A	G	2.945e^-4	0.888	INTERGENIC	transposable element FlyBase
2L	11300399	2L_11300399_SNP [dm3] 2L_11300399_SNP [dm6]	A	G	2.956e^-4	0.888	INTERGENIC
3R	25121924	3R_25121924_SNP [dm3] 3R_29296202_SNP [dm6]	G	A	2.957e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
3L	14148565	3L_14148565_SNP [dm3] 3L_14155465_SNP [dm6]	A	T	2.961e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16761055	3R_16761055_SNP [dm3] 3R_20935333_SNP [dm6]	G	A	2.968e^-4	0.888	INTRON CG31191
3L	2726074	3L_2726074_DEL [dm3] 3L_2726074_DEL [dm6]	TCTCATACAGT...	A	2.971e^-4	0.888	INTRON Mrtf
3R	5172915	3R_5172915_SNP [dm3] 3R_9347193_SNP [dm6]	T	C	2.974e^-4	0.888	INTRON CG45050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6370054	2L_6370054_SNP [dm3] 2L_6370054_SNP [dm6]	T	C	2.980e^-4	0.888	SYNONYMOUS_CODING CG9505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23540065	3R_23540065_SNP [dm3] 3R_27714343_SNP [dm6]	G	A	3.001e^-4	0.888	INTERGENIC
2R	3813168	2R_3813168_INS [dm3] 2R_7925663_INS [dm6]	G	GAA	3.002e^-4	0.888	UPSTREAM Kdm4A & 1 other INTERGENIC
2L	13941020	2L_13941020_SNP [dm3] 2L_13941020_SNP [dm6]	G	C	3.004e^-4	0.888	INTRON Ance-3
2L	5839759	2L_5839759_SNP [dm3] 2L_5839759_SNP [dm6]	G	A	3.009e^-4	0.888	INTRON TrissinR
2L	5840025	2L_5840025_SNP [dm3] 2L_5840025_SNP [dm6]	G	T	3.009e^-4	0.888	INTRON TrissinR
2R	19053082	2R_19053082_SNP [dm3] 2R_23165559_SNP [dm6]	T	A	3.013e^-4	0.888	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2L	8131764	2L_8131764_SNP [dm3] 2L_8131764_SNP [dm6]	C	G	3.014e^-4	0.888	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19570210	2R_19570210_DEL [dm3] 2R_23682687_DEL [dm6]	CT	C	3.018e^-4	0.888	UPSTREAM St3 INTRON St1	TF binding site mE1_TFBS_chinmo
3L	18036400	3L_18036400_DEL [dm3] 3L_18043300_DEL [dm6]	CTGCAT	C	3.021e^-4	0.888	INTRON Eip75B & 1 other
2R	10702994	2R_10702994_SNP [dm3] 2R_14815489_SNP [dm6]	A	T	3.024e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23652076	3R_23652076_SNP [dm3] 3R_27826354_SNP [dm6]	G	T	3.034e^-4	0.888	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11408820	2R_11408820_SNP [dm3] 2R_15521315_SNP [dm6]	A	G	3.040e^-4	0.888	INTRON Khc-73
3L	12960957	3L_12960957_SNP [dm3] 3L_12967857_SNP [dm6]	G	A	3.042e^-4	0.888	UPSTREAM Or69a INTERGENIC
X	8837993	X_8837993_SNP [dm3] X_8943960_SNP [dm6]	G	A	3.044e^-4	0.888	INTRON rdgA
X	6332994	X_6332994_SNP [dm3] X_6438961_SNP [dm6]	A	G	3.065e^-4	0.888	INTRON CG42340
2L	2256974	2L_2256974_SNP [dm3] 2L_2256974_SNP [dm6]	T	A	3.066e^-4	0.888	DOWNSTREAM CR44787 INTERGENIC
X	3616503	X_3616503_SNP [dm3] X_3722470_SNP [dm6]	G	T	3.077e^-4	0.888	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20282112	3R_20282112_SNP [dm3] 3R_24456390_SNP [dm6]	A	T	3.080e^-4	0.888	INTRON nAChRalpha1
2L	5567759	2L_5567759_SNP [dm3] 2L_5567759_SNP [dm6]	A	G	3.087e^-4	0.888	INTERGENIC
3R	20331956	3R_20331956_SNP [dm3] 3R_24506234_SNP [dm6]	C	T	3.087e^-4	0.888	INTERGENIC	transposable element FlyBase
X	9929481	X_9929481_SNP [dm3] X_10035448_SNP [dm6]	G	A	3.092e^-4	0.888	SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	11762303	2L_11762303_SNP [dm3] 2L_11762303_SNP [dm6]	T	A	3.095e^-4	0.888	INTERGENIC
3R	20958930	3R_20958930_DEL [dm3] 3R_25133208_DEL [dm6]	ACATCTG	A	3.108e^-4	0.888	CODON_DELETION Bili
2R	14384905	2R_14384905_SNP [dm3] 2R_18497400_SNP [dm6]	A	C	3.109e^-4	0.888	INTRON CG30116
3L	4900713	3L_4900713_SNP [dm3] 3L_4900713_SNP [dm6]	C	T	3.112e^-4	0.888	UTR_3_PRIME CG13704
X	21282627	X_21282627_SNP [dm3] X_21411600_SNP [dm6]	T	A	3.112e^-4	0.888	INTERGENIC
2L	10063887	2L_10063887_SNP [dm3] 2L_10063887_SNP [dm6]	C	G	3.118e^-4	0.888	UTR_3_PRIME Spn31A DOWNSTREAM CG44153
3R	14207263	3R_14207263_SNP [dm3] 3R_18381541_SNP [dm6]	T	A	3.124e^-4	0.888	UPSTREAM CG7675 DOWNSTREAM CG14309 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14207274	3R_14207274_SNP [dm3] 3R_18381552_SNP [dm6]	T	C	3.124e^-4	0.888	UPSTREAM CG7675 DOWNSTREAM CG14309 INTERGENIC
3L	11853505	3L_11853505_SNP [dm3] 3L_11860405_SNP [dm6]	G	A	3.125e^-4	0.888	INTRON CG44837
3R	27624326	3R_27624326_SNP [dm3] 3R_31798604_SNP [dm6]	C	T	3.146e^-4	0.888	SYNONYMOUS_CODING Acf1	TF binding site mE1_TFBS_sens
2L	22226714	2L_22226714_SNP [dm3] 2L_22226714_SNP [dm6]	G	C	3.148e^-4	0.888	EXON CR12628	transposable element FlyBase
X	18731180	X_18731180_SNP [dm3] X_18837147_SNP [dm6]	T	A	3.161e^-4	0.888	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	3.166e^-4	0.888	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	9930463	X_9930463_SNP [dm3] X_10036430_SNP [dm6]	A	T	3.170e^-4	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12880136	2R_12880136_SNP [dm3] 2R_16992631_SNP [dm6]	T	G	3.185e^-4	0.888	INTRON Cbp53E
3R	14816355	3R_14816355_SNP [dm3] 3R_18990633_SNP [dm6]	T	C	3.187e^-4	0.888	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14816385	3R_14816385_MNP [dm3] 3R_18990663_MNP [dm6]	CCG	TAT	3.187e^-4	0.888	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	10119150	2L_10119150_SNP [dm3] 2L_10119150_SNP [dm6]	C	A	3.190e^-4	0.888	INTRON CG44153 & 1 other	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	27655910	3R_27655910_SNP [dm3] 3R_31830188_SNP [dm6]	C	T	3.195e^-4	0.888	INTRON RhoGAP100F
3L	9207237	3L_9207237_SNP [dm3] 3L_9214137_SNP [dm6]	T	C	3.195e^-4	0.888	SYNONYMOUS_CODING CG4476	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4900722	3L_4900722_SNP [dm3] 3L_4900722_SNP [dm6]	A	C	3.206e^-4	0.888	UTR_3_PRIME CG13704
X	10815663	X_10815663_SNP [dm3] X_10921630_SNP [dm6]	G	A	3.208e^-4	0.888	UTR_3_PRIME CG43901 DOWNSTREAM CG43901	TF binding site BDTNP1_TFBS_dl
2R	13189221	2R_13189221_SNP [dm3] 2R_17301716_SNP [dm6]	T	C	3.214e^-4	0.888	INTRON mbl
3R	23642503	3R_23642503_SNP [dm3] 3R_27816781_SNP [dm6]	C	T	3.215e^-4	0.888	INTRON CG34353
3R	23649070	3R_23649070_SNP [dm3] 3R_27823348_SNP [dm6]	A	G	3.215e^-4	0.888	INTRON CG34353
3R	23652330	3R_23652330_SNP [dm3] 3R_27826608_SNP [dm6]	G	C	3.215e^-4	0.888	INTRON CG34353	TF binding site BDTNP1_TFBS_da
3R	23654588	3R_23654588_SNP [dm3] 3R_27828866_SNP [dm6]	G	A	3.215e^-4	0.888	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	23663628	3R_23663628_SNP [dm3] 3R_27837906_SNP [dm6]	G	A	3.215e^-4	0.888	INTRON CG34353
2L	11185814	2L_11185814_SNP [dm3] 2L_11185814_SNP [dm6]	G	C	3.220e^-4	0.888	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12136689	X_12136689_SNP [dm3] X_12242656_SNP [dm6]	C	A	3.220e^-4	0.888	INTRON Ten-a
2L	5743088	2L_5743088_SNP [dm3] 2L_5743088_SNP [dm6]	T	A	3.221e^-4	0.888	INTRON CG11030
X	11235893	X_11235893_SNP [dm3] X_11341860_SNP [dm6]	A	G	3.228e^-4	0.888	INTRON CG34348	TF binding site BDTNP1_TFBS_dl
3R	10283403	3R_10283403_SNP [dm3] 3R_14457681_SNP [dm6]	C	T	3.231e^-4	0.888	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20945006	3R_20945006_SNP [dm3] 3R_25119284_SNP [dm6]	C	T	3.231e^-4	0.888	SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27636158	3R_27636158_SNP [dm3] 3R_31810436_SNP [dm6]	T	C	3.232e^-4	0.888	UPSTREAM CG11576 DOWNSTREAM FeCH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15199465	2R_15199465_DEL [dm3] 2R_19311960_DEL [dm6]	AATA	A	3.233e^-4	0.888	UTR_3_PRIME Rgk1 DOWNSTREAM Rgk1
X	12137335	X_12137335_SNP [dm3] X_12243302_SNP [dm6]	A	G	3.235e^-4	0.888	INTRON Ten-a
3L	8274226	3L_8274226_SNP [dm3] 3L_8281126_SNP [dm6]	A	G	3.238e^-4	0.888	UTR_3_PRIME Dscam4
3R	17718845	3R_17718845_SNP [dm3] 3R_21893123_SNP [dm6]	T	A	3.241e^-4	0.888	INTRON CG6678
2L	15897802	2L_15897802_SNP [dm3] 2L_15897802_SNP [dm6]	T	C	3.243e^-4	0.888	DOWNSTREAM CG31735 INTERGENIC
3R	24703029	3R_24703029_SNP [dm3] 3R_28877307_SNP [dm6]	A	G	3.250e^-4	0.888	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17213581	2L_17213581_SNP [dm3] 2L_17213581_SNP [dm6]	A	G	3.251e^-4	0.888	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17213589	2L_17213589_SNP [dm3] 2L_17213589_SNP [dm6]	C	T	3.251e^-4	0.888	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13019718	3L_13019718_SNP [dm3] 3L_13026618_SNP [dm6]	C	T	3.253e^-4	0.888	UPSTREAM Zmynd10 INTERGENIC
3L	13019722	3L_13019722_SNP [dm3] 3L_13026622_SNP [dm6]	A	G	3.253e^-4	0.888	UPSTREAM Zmynd10 INTERGENIC
2L	6243833	2L_6243833_SNP [dm3] 2L_6243833_SNP [dm6]	C	A	3.264e^-4	0.888	INTERGENIC
2L	11198395	2L_11198395_SNP [dm3] 2L_11198395_SNP [dm6]	C	A	3.271e^-4	0.888	INTRON Ca-beta
2R	16337897	2R_16337897_SNP [dm3] 2R_20450392_SNP [dm6]	C	G	3.284e^-4	0.888	INTRON CG12484
3R	19653550	3R_19653550_SNP [dm3] 3R_23827828_SNP [dm6]	G	A	3.292e^-4	0.888	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6012770	2L_6012770_SNP [dm3] 2L_6012770_SNP [dm6]	G	A	3.302e^-4	0.888	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
2L	12182830	2L_12182830_SNP [dm3] 2L_12182830_SNP [dm6]	T	C	3.305e^-4	0.888	INTRON aret
3L	3297046	3L_3297046_SNP [dm3] 3L_3297046_SNP [dm6]	A	G	3.314e^-4	0.888	SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_inv
3L	14383202	3L_14383202_SNP [dm3] 3L_14390102_SNP [dm6]	C	T	3.317e^-4	0.888	INTERGENIC
2R	12633725	2R_12633725_SNP [dm3] 2R_16746220_SNP [dm6]	C	G	3.320e^-4	0.888	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6273248	2R_6273248_SNP [dm3] 2R_10385743_SNP [dm6]	T	G	3.323e^-4	0.888	INTRON CG42732
2L	6933386	2L_6933386_SNP [dm3] 2L_6933386_SNP [dm6]	G	A	3.323e^-4	0.888	DOWNSTREAM CG43232 INTRON CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16599853	X_16599853_SNP [dm3] X_16705820_SNP [dm6]	A	T	3.324e^-4	0.888	DOWNSTREAM CG9672 & 1 other INTRON CG4678
2L	16450465	2L_16450465_SNP [dm3] 2L_16450465_SNP [dm6]	A	G	3.331e^-4	0.888	UTR_3_PRIME Idgf2 UPSTREAM Idgf3
2R	8950224	2R_8950224_SNP [dm3] 2R_13062719_SNP [dm6]	T	C	3.331e^-4	0.888	INTRON Drl-2
3R	10658746	3R_10658746_SNP [dm3] 3R_14833024_SNP [dm6]	T	G	3.331e^-4	0.888	INTRON btsz
3R	25231542	3R_25231542_DEL [dm3] 3R_29405820_DEL [dm6]	CAGCACAAC	C	3.335e^-4	0.888	INTRON Ptp99A	TF binding site mE1_TFBS_inv
2R	14454176	2R_14454176_SNP [dm3] 2R_18566671_SNP [dm6]	A	G	3.336e^-4	0.888	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8841783	X_8841783_SNP [dm3] X_8947750_SNP [dm6]	A	G	3.341e^-4	0.888	INTRON rdgA
2L	16341206	2L_16341206_DEL [dm3] 2L_16341206_DEL [dm6]	TACC	T	3.357e^-4	0.888	UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6595823	2R_6595823_SNP [dm3] 2R_10708318_SNP [dm6]	C	T	3.366e^-4	0.888	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
X	1271019	X_1271019_SNP [dm3] X_1376986_SNP [dm6]	C	T	3.375e^-4	0.888	SYNONYMOUS_CODING AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15147326	2L_15147326_SNP [dm3] 2L_15147326_SNP [dm6]	C	A	3.377e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26939769	3R_26939769_SNP [dm3] 3R_31114047_SNP [dm6]	A	G	3.380e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13708877	2L_13708877_SNP [dm3] 2L_13708877_SNP [dm6]	C	T	3.381e^-4	0.888	SYNONYMOUS_CODING CG7311 INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11304820	3L_11304820_SNP [dm3] 3L_11311720_SNP [dm6]	A	C	3.386e^-4	0.888	UPSTREAM CG7573 INTERGENIC
X	12132390	X_12132390_SNP [dm3] X_12238357_SNP [dm6]	A	C	3.388e^-4	0.888	INTRON Ten-a
2R	11538760	2R_11538760_SNP [dm3] 2R_15651255_SNP [dm6]	T	G	3.401e^-4	0.888	DOWNSTREAM CG42524 INTRON CG42524
3R	14339840	3R_14339840_INS [dm3] 3R_18514118_INS [dm6]	G	GAT	3.404e^-4	0.888	UTR_5_PRIME fru INTRON fru
2R	11841107	2R_11841107_SNP [dm3] 2R_15953602_SNP [dm6]	G	A	3.405e^-4	0.888	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2232517	3L_2232517_SNP [dm3] 3L_2232517_SNP [dm6]	A	G	3.411e^-4	0.888	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1548957	3L_1548957_SNP [dm3] 3L_1548957_SNP [dm6]	G	A	3.423e^-4	0.888	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2061701	2L_2061701_SNP [dm3] 2L_2061701_SNP [dm6]	T	A	3.426e^-4	0.888	INTRON dpr3
2R	19927907	2R_19927907_SNP [dm3] 2R_24040384_SNP [dm6]	A	G	3.433e^-4	0.888	SYNONYMOUS_CODING IntS1
3L	11304819	3L_11304819_SNP [dm3] 3L_11311719_SNP [dm6]	T	A	3.434e^-4	0.888	UPSTREAM CG7573 INTERGENIC
3L	2229856	3L_2229856_SNP [dm3] 3L_2229856_SNP [dm6]	T	C	3.442e^-4	0.888	SPLICE_SITE_REGION Oseg2 INTRON Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15108614	3R_15108614_SNP [dm3] 3R_19282892_SNP [dm6]	C	G	3.443e^-4	0.888	INTERGENIC
3R	11795562	3R_11795562_SNP [dm3] 3R_15969840_SNP [dm6]	T	A	3.449e^-4	0.888	INTRON mor	TF binding site mE1_TFBS_cad
2L	16711940	2L_16711940_SNP [dm3] 2L_16711940_SNP [dm6]	A	T	3.451e^-4	0.888	INTRON CG31808
X	8713666	X_8713666_SNP [dm3] X_8819633_SNP [dm6]	G	A	3.452e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6272117	2R_6272117_SNP [dm3] 2R_10384612_SNP [dm6]	A	G	3.457e^-4	0.888	INTRON CG42732
2L	20550693	2L_20550693_DEL [dm3] 2L_20550693_DEL [dm6]	TAAGCCAATTAAATGGCCGT...	T	3.460e^-4	0.888	INTERGENIC
2R	20294312	2R_20294312_SNP [dm3] 2R_24406789_SNP [dm6]	G	A	3.460e^-4	0.888	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
2R	13765329	2R_13765329_SNP [dm3] 2R_17877824_SNP [dm6]	T	C	3.462e^-4	0.888	SYNONYMOUS_CODING CG30325 INTRON Elk
2R	8519545	2R_8519545_SNP [dm3] 2R_12632040_SNP [dm6]	T	C	3.469e^-4	0.888	SYNONYMOUS_CODING muskelin UPSTREAM CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	2753477	2R_2753477_SNP [dm3] 2R_6865972_SNP [dm6]	A	G	3.469e^-4	0.888	INTRON coro
2R	11564359	2R_11564359_SNP [dm3] 2R_15676854_SNP [dm6]	G	A	3.476e^-4	0.888	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20538923	2L_20538923_SNP [dm3] 2L_20538923_SNP [dm6]	T	C	3.487e^-4	0.888	DOWNSTREAM CR45707 INTERGENIC
2R	9225685	2R_9225685_SNP [dm3] 2R_13338180_SNP [dm6]	C	T	3.493e^-4	0.888	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	9112816	2R_9112816_SNP [dm3] 2R_13225311_SNP [dm6]	C	T	3.495e^-4	0.888	UPSTREAM Dp & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17259426	2L_17259426_SNP [dm3] 2L_17259426_SNP [dm6]	C	T	3.497e^-4	0.888	INTRON beat-IIIc
X	12132407	X_12132407_SNP [dm3] X_12238374_SNP [dm6]	G	A	3.499e^-4	0.888	INTRON Ten-a
2L	16123014	2L_16123014_SNP [dm3] 2L_16123014_SNP [dm6]	T	G	3.501e^-4	0.888	INTERGENIC
2L	8333262	2L_8333262_SNP [dm3] 2L_8333262_SNP [dm6]	G	A	3.503e^-4	0.888	DOWNSTREAM CG14275 INTERGENIC
2L	11248938	2L_11248938_SNP [dm3] 2L_11248938_SNP [dm6]	T	A	3.526e^-4	0.888	INTRON ab
3R	21728644	3R_21728644_SNP [dm3] 3R_25902922_SNP [dm6]	C	T	3.527e^-4	0.888	SYNONYMOUS_CODING CG31089 DOWNSTREAM CG31091 EXON CR43259
2L	12021712	2L_12021712_SNP [dm3] 2L_12021712_SNP [dm6]	A	T	3.535e^-4	0.888	UPSTREAM CG6734 INTERGENIC
2R	10168792	2R_10168792_SNP [dm3] 2R_14281287_SNP [dm6]	C	T	3.537e^-4	0.888	INTRON Ih	TF binding site mE1_TFBS_HSA
3L	17397975	3L_17397975_SNP [dm3] 3L_17404875_SNP [dm6]	C	A	3.539e^-4	0.888	UPSTREAM blot INTRON blot
2R	15198558	2R_15198558_SNP [dm3] 2R_19311053_SNP [dm6]	T	A	3.544e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2R	16450459	2R_16450459_SNP [dm3] 2R_20562954_SNP [dm6]	G	T	3.551e^-4	0.888	UTR_5_PRIME CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other
2L	9446969	2L_9446969_DEL [dm3] 2L_9446969_DEL [dm6]	AACTGCTTTA	A	3.555e^-4	0.888	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11574898	3L_11574898_SNP [dm3] 3L_11581798_SNP [dm6]	G	A	3.577e^-4	0.888	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
3L	11574901	3L_11574901_SNP [dm3] 3L_11581801_SNP [dm6]	A	C	3.577e^-4	0.888	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
2L	10858309	2L_10858309_SNP [dm3] 2L_10858309_SNP [dm6]	A	C	3.581e^-4	0.888	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	3558617	X_3558617_SNP [dm3] X_3664584_SNP [dm6]	A	T	3.584e^-4	0.888	SYNONYMOUS_CODING AstA-R1
X	885284	X_885284_INS [dm3] X_991251_INS [dm6]	A	ACTTTTCA	3.588e^-4	0.888	DOWNSTREAM CG18823 INTERGENIC
2L	8248534	2L_8248534_SNP [dm3] 2L_8248534_SNP [dm6]	G	A	3.592e^-4	0.888	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo
2L	11473631	2L_11473631_SNP [dm3] 2L_11473631_SNP [dm6]	C	T	3.603e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14744551	2L_14744551_SNP [dm3] 2L_14744551_SNP [dm6]	T	A	3.605e^-4	0.888	NON_SYNONYMOUS_CODING CG42681 DOWNSTREAM CG34166 & 2 others
2R	2600926	2R_2600926_SNP [dm3] 2R_6713421_SNP [dm6]	A	G	3.605e^-4	0.888	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16123010	2L_16123010_SNP [dm3] 2L_16123010_SNP [dm6]	A	G	3.614e^-4	0.888	INTERGENIC
3R	17308003	3R_17308003_SNP [dm3] 3R_21482281_SNP [dm6]	C	A	3.617e^-4	0.888	UPSTREAM CG7922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	19806819	2L_19806819_SNP [dm3] 2L_19806819_SNP [dm6]	G	C	3.624e^-4	0.888	INTRON sick
2R	6641555	2R_6641555_SNP [dm3] 2R_10754050_SNP [dm6]	G	T	3.624e^-4	0.888	INTRON CG33144
2L	15048403	2L_15048403_SNP [dm3] 2L_15048403_SNP [dm6]	T	C	3.628e^-4	0.888	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2L	15461696	2L_15461696_SNP [dm3] 2L_15461696_SNP [dm6]	T	C	3.632e^-4	0.888	INTERGENIC
2L	7475644	2L_7475644_SNP [dm3] 2L_7475644_SNP [dm6]	A	G	3.647e^-4	0.888	SYNONYMOUS_CODING CG6441 INTRON Ziz
3R	24963568	3R_24963568_SNP [dm3] 3R_29137846_SNP [dm6]	A	T	3.649e^-4	0.888	UTR_3_PRIME Vha100-1 UPSTREAM CG14516 DOWNSTREAM CG14512
2L	15056928	2L_15056928_SNP [dm3] 2L_15056928_SNP [dm6]	T	C	3.662e^-4	0.888	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	5227485	3L_5227485_DEL [dm3] 3L_5234385_DEL [dm6]	TAATA	T	3.664e^-4	0.888	UPSTREAM CG4669 INTRON shep
2R	7064489	2R_7064489_SNP [dm3] 2R_11176984_SNP [dm6]	C	G	3.671e^-4	0.888	INTRON shn
2R	15198158	2R_15198158_SNP [dm3] 2R_19310653_SNP [dm6]	T	C	3.673e^-4	0.888	START_GAINED EndoB UTR_5_PRIME EndoB DOWNSTREAM Rgk1
2R	18387265	2R_18387265_SNP [dm3] 2R_22499760_SNP [dm6]	G	C	3.676e^-4	0.888	INTRON px	TF binding site mE1_TFBS_cad
X	5985629	X_5985629_SNP [dm3] X_6091596_SNP [dm6]	A	T	3.677e^-4	0.888	UPSTREAM Nep1 & 1 other DOWNSTREAM CR44959 INTRON Nep1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14950759	2R_14950759_SNP [dm3] 2R_19063254_SNP [dm6]	A	C	3.679e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6908297	2L_6908297_SNP [dm3] 2L_6908297_SNP [dm6]	A	G	3.691e^-4	0.888	SYNONYMOUS_CODING Rat1 UPSTREAM CG13773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16450456	2R_16450456_SNP [dm3] 2R_20562951_SNP [dm6]	G	A	3.692e^-4	0.888	UTR_5_PRIME CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other
2R	10685103	2R_10685103_DEL [dm3] 2R_14797598_DEL [dm6]	TGGAGATT	T	3.701e^-4	0.888	UPSTREAM kn INTRON kn
3R	14330225	3R_14330225_INS [dm3] 3R_18504503_INS [dm6]	A	ACCT	3.708e^-4	0.888	UPSTREAM fru INTRON fru
3R	14330227	3R_14330227_SNP [dm3] 3R_18504505_SNP [dm6]	G	A	3.708e^-4	0.888	UPSTREAM fru INTRON fru
3R	17144715	3R_17144715_SNP [dm3] 3R_21318993_SNP [dm6]	G	T	3.709e^-4	0.888	UTR_3_PRIME CG16791
3R	18883839	3R_18883839_SNP [dm3] 3R_23058117_SNP [dm6]	T	C	3.720e^-4	0.888	UPSTREAM CG17119 DOWNSTREAM sav INTRON CG17119	TF binding site BDTNP1_TFBS_twi
X	11232642	X_11232642_SNP [dm3] X_11338609_SNP [dm6]	T	C	3.723e^-4	0.888	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
2R	16316308	2R_16316308_SNP [dm3] 2R_20428803_SNP [dm6]	G	A	3.727e^-4	0.888	INTRON CG12484
3L	5138285	3L_5138285_SNP [dm3] 3L_5145185_SNP [dm6]	G	A	3.729e^-4	0.888	UPSTREAM Aats-ala-m DOWNSTREAM CG4623 INTRON CG10671	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
3R	27495603	3R_27495603_SNP [dm3] 3R_31669881_SNP [dm6]	C	T	3.735e^-4	0.888	UTR_5_PRIME CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4784182	3L_4784182_SNP [dm3] 3L_4784182_SNP [dm6]	T	A	3.742e^-4	0.888	INTRON RhoGEF64C
3R	17739575	3R_17739575_SNP [dm3] 3R_21913853_SNP [dm6]	G	C	3.763e^-4	0.888	NON_SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690	TF binding site mE1_TFBS_Trl
2L	16263547	2L_16263547_SNP [dm3] 2L_16263547_SNP [dm6]	T	G	3.768e^-4	0.888	DOWNSTREAM crp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1850301	3L_1850301_SNP [dm3] 3L_1850301_SNP [dm6]	C	T	3.771e^-4	0.888	DOWNSTREAM CG13936 INTERGENIC
2R	17193021	2R_17193021_SNP [dm3] 2R_21305516_SNP [dm6]	A	T	3.771e^-4	0.888	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	8259719	X_8259719_SNP [dm3] X_8365686_SNP [dm6]	C	T	3.785e^-4	0.888	UTR_5_PRIME nAChRalpha3
2L	3435266	2L_3435266_SNP [dm3] 2L_3435266_SNP [dm6]	A	T	3.786e^-4	0.888	INTERGENIC
2L	14728722	2L_14728722_DEL [dm3] 2L_14728722_DEL [dm6]	TT	T	3.792e^-4	0.888	INTRON CG42685
2L	15060160	2L_15060160_SNP [dm3] 2L_15060160_SNP [dm6]	G	A	3.793e^-4	0.888	SYNONYMOUS_CODING TfIIS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15108621	3R_15108621_SNP [dm3] 3R_19282899_SNP [dm6]	G	A	3.799e^-4	0.888	INTERGENIC
3R	14632256	3R_14632256_SNP [dm3] 3R_18806534_SNP [dm6]	A	G	3.819e^-4	0.888	NON_SYNONYMOUS_CODING CG18208	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12027045	2L_12027045_SNP [dm3] 2L_12027045_SNP [dm6]	A	G	3.820e^-4	0.888	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6404238	X_6404238_SNP [dm3] X_6510205_SNP [dm6]	T	G	3.821e^-4	0.888	INTRON CG42340	TF binding site mE1_TFBS_kn
3L	17689048	3L_17689048_SNP [dm3] 3L_17695948_SNP [dm6]	C	T	3.822e^-4	0.888	INTRON Ccn
X	16599855	X_16599855_SNP [dm3] X_16705822_SNP [dm6]	A	C	3.827e^-4	0.888	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3R	23540117	3R_23540117_SNP [dm3] 3R_27714395_SNP [dm6]	A	G	3.832e^-4	0.888	INTERGENIC
2R	10685354	2R_10685354_DEL [dm3] 2R_14797849_DEL [dm6]	AAAA	T	3.839e^-4	0.888	UPSTREAM kn INTRON kn
3R	16872055	3R_16872055_SNP [dm3] 3R_21046333_SNP [dm6]	C	T	3.840e^-4	0.888	SPLICE_SITE_REGION CG31207 UPSTREAM CG31189 INTRON CG31207	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11532943	2R_11532943_SNP [dm3] 2R_15645438_SNP [dm6]	A	G	3.842e^-4	0.888	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	439196	3L_439196_INS [dm3] 3L_439196_INS [dm6]	C	CG	3.844e^-4	0.888	INTRON klar
3R	26741352	3R_26741352_SNP [dm3] 3R_30915630_SNP [dm6]	C	A	3.851e^-4	0.888	INTRON Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11901295	2L_11901295_SNP [dm3] 2L_11901295_SNP [dm6]	G	C	3.859e^-4	0.888	INTRON Pde1c
2R	1588824	2R_1588824_SNP [dm3] 2R_5701319_SNP [dm6]	T	A	3.861e^-4	0.888	UPSTREAM vlc INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx transposable element FlyBase
X	9930506	X_9930506_SNP [dm3] X_10036473_SNP [dm6]	C	A	3.864e^-4	0.888	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10124339	2L_10124339_SNP [dm3] 2L_10124339_SNP [dm6]	A	T	3.875e^-4	0.888	INTRON CG44153 & 1 other
2L	6243844	2L_6243844_SNP [dm3] 2L_6243844_SNP [dm6]	A	T	3.888e^-4	0.888	INTERGENIC
3R	14416735	3R_14416735_SNP [dm3] 3R_18591013_SNP [dm6]	C	T	3.888e^-4	0.888	UPSTREAM qin DOWNSTREAM CG7694 INTERGENIC
2R	5978150	2R_5978150_SNP [dm3] 2R_10090645_SNP [dm6]	G	C	3.896e^-4	0.888	NON_SYNONYMOUS_CODING CG2269
2L	14565223	2L_14565223_SNP [dm3] 2L_14565223_SNP [dm6]	C	T	3.900e^-4	0.888	INTERGENIC
3L	11307064	3L_11307064_SNP [dm3] 3L_11313964_SNP [dm6]	T	C	3.909e^-4	0.888	DOWNSTREAM CG7573 INTERGENIC
2L	17834712	2L_17834712_SNP [dm3] 2L_17834712_SNP [dm6]	A	G	3.919e^-4	0.888	INTRON CadN2	TF binding site mE1_TFBS_HSA
2L	4239500	2L_4239500_SNP [dm3] 2L_4239500_SNP [dm6]	G	C	3.922e^-4	0.888	DOWNSTREAM CR45720 INTERGENIC
3L	3582620	3L_3582620_SNP [dm3] 3L_3582620_SNP [dm6]	A	T	3.923e^-4	0.888	INTRON Eip63E	TF binding site mE1_TFBS_inv
X	16559438	X_16559438_SNP [dm3] X_16665405_SNP [dm6]	C	G	3.929e^-4	0.888	UPSTREAM CG15865 INTRON r
2L	8044532	2L_8044532_SNP [dm3] 2L_8044532_SNP [dm6]	C	T	3.940e^-4	0.888	SYNONYMOUS_CODING CG7466 INTRON CG7466
2R	3813997	2R_3813997_SNP [dm3] 2R_7926492_SNP [dm6]	A	T	3.949e^-4	0.888	UPSTREAM CG8791 INTERGENIC
2L	3490927	2L_3490927_SNP [dm3] 2L_3490927_SNP [dm6]	C	A	3.958e^-4	0.888	UTR_5_PRIME CG15414
2R	3535665	2R_3535665_SNP [dm3] 2R_7648160_SNP [dm6]	C	T	3.959e^-4	0.888	DOWNSTREAM CG43340 INTRON CG43340
2L	14967079	2L_14967079_SNP [dm3] 2L_14967079_SNP [dm6]	A	G	3.968e^-4	0.888	INTRON CG42313
2L	14967083	2L_14967083_SNP [dm3] 2L_14967083_SNP [dm6]	C	T	3.968e^-4	0.888	INTRON CG42313
3L	14796739	3L_14796739_SNP [dm3] 3L_14803639_SNP [dm6]	T	C	3.969e^-4	0.888	UPSTREAM gnu INTERGENIC
3R	26482702	3R_26482702_SNP [dm3] 3R_30656980_SNP [dm6]	A	C	3.975e^-4	0.888	INTERGENIC
X	16436210	X_16436210_SNP [dm3] X_16542177_SNP [dm6]	T	C	3.983e^-4	0.888	UTR_3_PRIME CG9902
3L	11414358	3L_11414358_SNP [dm3] 3L_11421258_SNP [dm6]	C	T	3.984e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7662578	2R_7662578_SNP [dm3] 2R_11775073_SNP [dm6]	T	C	3.996e^-4	0.888	INTRON ths
2L	10121229	2L_10121229_SNP [dm3] 2L_10121229_SNP [dm6]	A	G	4.006e^-4	0.888	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
3L	11173750	3L_11173750_SNP [dm3] 3L_11180650_SNP [dm6]	A	G	4.006e^-4	0.888	INTRON GlcAT-P
2L	22110952	2L_22110952_INS [dm3] 2L_22110952_INS [dm6]	A	ACATA	4.009e^-4	0.888	DOWNSTREAM CG6675 INTERGENIC
3R	27524544	3R_27524544_SNP [dm3] 3R_31698822_SNP [dm6]	A	C	4.030e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	16744848	X_16744848_INS [dm3] X_16850815_INS [dm6]	A	ATA	4.031e^-4	0.888	INTRON CG13003
2R	11564395	2R_11564395_SNP [dm3] 2R_15676890_SNP [dm6]	T	A	4.037e^-4	0.888	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26040438	3R_26040438_SNP [dm3] 3R_30214716_SNP [dm6]	C	A	4.044e^-4	0.888	UPSTREAM CecB INTERGENIC
3L	4314638	3L_4314638_SNP [dm3] 3L_4314638_SNP [dm6]	T	G	4.053e^-4	0.888	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	8043126	2L_8043126_SNP [dm3] 2L_8043126_SNP [dm6]	T	C	4.069e^-4	0.888	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9505161	2R_9505161_SNP [dm3] 2R_13617656_SNP [dm6]	A	G	4.075e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12344027	2L_12344027_SNP [dm3] 2L_12344027_SNP [dm6]	T	C	4.078e^-4	0.888	UTR_5_PRIME CG43813 UPSTREAM bru-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14981924	2L_14981924_SNP [dm3] 2L_14981924_SNP [dm6]	T	A	4.080e^-4	0.888	INTRON mol
2R	8893080	2R_8893080_SNP [dm3] 2R_13005575_SNP [dm6]	T	A	4.085e^-4	0.888	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15544543	2R_15544543_SNP [dm3] 2R_19657038_SNP [dm6]	A	T	4.086e^-4	0.888	UPSTREAM CG15125 EXON CR44214
2R	7669289	2R_7669289_SNP [dm3] 2R_11781784_SNP [dm6]	C	A	4.087e^-4	0.888	INTRON ths
2L	6085578	2L_6085578_SNP [dm3] 2L_6085578_SNP [dm6]	G	A	4.089e^-4	0.888	INTRON Kr-h1	TF binding site mE1_TFBS_inv
2L	2691984	2L_2691984_SNP [dm3] 2L_2691984_SNP [dm6]	G	C	4.099e^-4	0.888	INTRON CG31690
2L	12021560	2L_12021560_SNP [dm3] 2L_12021560_SNP [dm6]	A	G	4.111e^-4	0.888	UPSTREAM CG6734 INTERGENIC
3L	11173749	3L_11173749_SNP [dm3] 3L_11180649_SNP [dm6]	G	A	4.115e^-4	0.888	INTRON GlcAT-P
3R	22749916	3R_22749916_SNP [dm3] 3R_26924194_SNP [dm6]	C	T	4.121e^-4	0.888	INTRON sda
4	245287	4_245287_SNP [dm3] 4_224661_SNP [dm6]	A	T	4.122e^-4	0.888	INTRON CG31999
2L	14900235	2L_14900235_SNP [dm3] 2L_14900235_SNP [dm6]	G	T	4.125e^-4	0.888	INTERGENIC
X	8509181	X_8509181_SNP [dm3] X_8615148_SNP [dm6]	G	T	4.128e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	14720920	2L_14720920_SNP [dm3] 2L_14720920_SNP [dm6]	C	T	4.129e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	11473740	2L_11473740_SNP [dm3] 2L_11473740_SNP [dm6]	C	A	4.130e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	4.134e^-4	0.888	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11574894	3L_11574894_SNP [dm3] 3L_11581794_SNP [dm6]	A	T	4.136e^-4	0.888	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
X	2761763	X_2761763_SNP [dm3] X_2867730_SNP [dm6]	C	A	4.145e^-4	0.888	INTRON kirre	TF binding site mE1_TFBS_inv
2L	10132714	2L_10132714_DEL [dm3] 2L_10132714_DEL [dm6]	AGA	A	4.145e^-4	0.888	INTRON CG44153
2L	20270440	2L_20270440_SNP [dm3] 2L_20270440_SNP [dm6]	A	C	4.148e^-4	0.888	INTERGENIC
3R	18260225	3R_18260225_SNP [dm3] 3R_22434503_SNP [dm6]	T	C	4.149e^-4	0.888	INTRON CG13847
X	8300081	X_8300081_SNP [dm3] X_8406048_SNP [dm6]	C	T	4.150e^-4	0.888	SYNONYMOUS_CODING CG11190	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14950635	2R_14950635_SNP [dm3] 2R_19063130_SNP [dm6]	G	C	4.151e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25121918	3R_25121918_SNP [dm3] 3R_29296196_SNP [dm6]	T	C	4.155e^-4	0.888	NON_SYNONYMOUS_CODING CG14506
X	5473822	X_5473822_SNP [dm3] X_5579789_SNP [dm6]	A	T	4.160e^-4	0.888	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1248017	X_1248017_SNP [dm3] X_1353984_SNP [dm6]	C	G	4.164e^-4	0.888	UPSTREAM CG11417 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3813527	2R_3813527_SNP [dm3] 2R_7926022_SNP [dm6]	A	T	4.176e^-4	0.888	UPSTREAM CG8791 INTERGENIC
3L	19687282	3L_19687282_SNP [dm3] 3L_19694182_SNP [dm6]	A	T	4.177e^-4	0.888	INTRON verm
2L	14404156	2L_14404156_SNP [dm3] 2L_14404156_SNP [dm6]	A	G	4.183e^-4	0.888	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15965527	2L_15965527_SNP [dm3] 2L_15965527_SNP [dm6]	C	T	4.186e^-4	0.888	INTERGENIC
3R	22765580	3R_22765580_SNP [dm3] 3R_26939858_SNP [dm6]	T	C	4.189e^-4	0.888	INTRON sda
2R	10468155	2R_10468155_SNP [dm3] 2R_14580650_SNP [dm6]	G	T	4.191e^-4	0.888	INTRON ttv
X	18137012	X_18137012_SNP [dm3] X_18242979_SNP [dm6]	G	A	4.198e^-4	0.888	SYNONYMOUS_CODING upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18032300	2R_18032300_SNP [dm3] 2R_22144795_SNP [dm6]	G	A	4.200e^-4	0.888	INTRON a	TF binding site mE1_TFBS_HSA
2L	14429246	2L_14429246_SNP [dm3] 2L_14429246_SNP [dm6]	G	A	4.207e^-4	0.888	EXON CR44732	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14993065	2L_14993065_SNP [dm3] 2L_14993065_SNP [dm6]	T	C	4.209e^-4	0.888	INTRON mol
2R	15198201	2R_15198201_SNP [dm3] 2R_19310696_SNP [dm6]	G	A	4.211e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2R	10626656	2R_10626656_SNP [dm3] 2R_14739151_SNP [dm6]	G	A	4.214e^-4	0.888	DOWNSTREAM CG12858 EXON CR43428
3R	26660475	3R_26660475_DEL [dm3] 3R_30834753_DEL [dm6]	TTATAG	T	4.217e^-4	0.888	INTRON CG15544
2R	18733103	2R_18733103_SNP [dm3] 2R_22845580_SNP [dm6]	G	A	4.222e^-4	0.888	UPSTREAM CG3649 INTERGENIC
3L	13329505	3L_13329505_SNP [dm3] 3L_13336405_SNP [dm6]	A	G	4.227e^-4	0.888	INTERGENIC
2R	7068058	2R_7068058_SNP [dm3] 2R_11180553_SNP [dm6]	C	T	4.228e^-4	0.888	INTRON shn
3L	12996599	3L_12996599_SNP [dm3] 3L_13003499_SNP [dm6]	G	A	4.228e^-4	0.888	INTERGENIC
2R	15198221	2R_15198221_SNP [dm3] 2R_19310716_SNP [dm6]	G	T	4.232e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2R	15198227	2R_15198227_SNP [dm3] 2R_19310722_SNP [dm6]	T	C	4.232e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
X	5886339	X_5886339_SNP [dm3] X_5992306_SNP [dm6]	C	T	4.234e^-4	0.888	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
2R	11587857	2R_11587857_SNP [dm3] 2R_15700352_SNP [dm6]	T	A	4.237e^-4	0.888	START_GAINED CG42662 UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17176504	2R_17176504_SNP [dm3] 2R_21288999_SNP [dm6]	T	C	4.252e^-4	0.888	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	10982579	3L_10982579_SNP [dm3] 3L_10989479_SNP [dm6]	A	G	4.252e^-4	0.888	INTRON klu	TF binding site mE1_TFBS_HSA
3R	26932078	3R_26932078_SNP [dm3] 3R_31106356_SNP [dm6]	T	C	4.252e^-4	0.888	DOWNSTREAM CG11318 INTERGENIC
3L	11814026	3L_11814026_SNP [dm3] 3L_11820926_SNP [dm6]	C	A	4.253e^-4	0.888	NON_SYNONYMOUS_CODING CG11597 UPSTREAM CG5946 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10487963	3L_10487963_SNP [dm3] 3L_10494863_SNP [dm6]	T	C	4.257e^-4	0.888	INTRON A2bp1
2L	8341732	2L_8341732_SNP [dm3] 2L_8341732_SNP [dm6]	A	G	4.258e^-4	0.888	UTR_3_PRIME CG14274 UPSTREAM CG14273
2L	15092230	2L_15092230_SNP [dm3] 2L_15092230_SNP [dm6]	G	A	4.261e^-4	0.888	SYNONYMOUS_CODING CG15270
X	10029844	X_10029844_SNP [dm3] X_10135811_SNP [dm6]	G	A	4.263e^-4	0.888	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25247347	3R_25247347_SNP [dm3] 3R_29421625_SNP [dm6]	C	T	4.279e^-4	0.888	INTRON Ptp99A
2L	11262619	2L_11262619_SNP [dm3] 2L_11262619_SNP [dm6]	T	A	4.279e^-4	0.888	NON_SYNONYMOUS_CODING cmet SPLICE_SITE_REGION cmet
2R	3800886	2R_3800886_SNP [dm3] 2R_7913381_SNP [dm6]	C	A	4.283e^-4	0.888	INTRON CG30377
2R	11604618	2R_11604618_SNP [dm3] 2R_15717113_SNP [dm6]	T	C	4.283e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8333302	2L_8333302_SNP [dm3] 2L_8333302_SNP [dm6]	T	A	4.287e^-4	0.888	DOWNSTREAM CG14275 INTERGENIC
2L	8334687	2L_8334687_SNP [dm3] 2L_8334687_SNP [dm6]	T	G	4.287e^-4	0.888	INTERGENIC
2L	8335983	2L_8335983_SNP [dm3] 2L_8335983_SNP [dm6]	C	T	4.287e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20443144	3R_20443144_SNP [dm3] 3R_24617422_SNP [dm6]	G	A	4.294e^-4	0.888	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21884166	2L_21884166_SNP [dm3] 2L_21884166_SNP [dm6]	G	A	4.297e^-4	0.888	INTERGENIC
2L	11462098	2L_11462098_SNP [dm3] 2L_11462098_SNP [dm6]	C	T	4.299e^-4	0.888	INTERGENIC
2R	11538723	2R_11538723_SNP [dm3] 2R_15651218_SNP [dm6]	C	T	4.305e^-4	0.888	DOWNSTREAM CG42524 INTRON CG42524
2R	13336202	2R_13336202_SNP [dm3] 2R_17448697_SNP [dm6]	T	G	4.311e^-4	0.888	UTR_3_PRIME mthl3
2L	4571937	2L_4571937_SNP [dm3] 2L_4571937_SNP [dm6]	T	G	4.320e^-4	0.888	INTRON dp
2R	15998487	2R_15998487_SNP [dm3] 2R_20110982_SNP [dm6]	T	A	4.324e^-4	0.888	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16730309	2R_16730309_SNP [dm3] 2R_20842804_SNP [dm6]	G	C	4.325e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15630576	2L_15630576_SNP [dm3] 2L_15630576_SNP [dm6]	C	G	4.330e^-4	0.888	INTRON CG18480
2L	11291370	2L_11291370_SNP [dm3] 2L_11291370_SNP [dm6]	A	T	4.333e^-4	0.888	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20865847	2L_20865847_SNP [dm3] 2L_20865847_SNP [dm6]	G	A	4.333e^-4	0.888	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19324890	3L_19324890_SNP [dm3] 3L_19331790_SNP [dm6]	T	C	4.341e^-4	0.888	INTRON pip
X	22135855	X_22135855_SNP [dm3] X_22734019_SNP [dm6]	C	T	4.344e^-4	0.888	INTRON CR44997
2L	10858242	2L_10858242_SNP [dm3] 2L_10858242_SNP [dm6]	A	G	4.348e^-4	0.888	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	1279363	X_1279363_SNP [dm3] X_1385330_SNP [dm6]	G	T	4.350e^-4	0.888	UPSTREAM CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	17314360	2R_17314360_SNP [dm3] 2R_21426855_SNP [dm6]	A	T	4.355e^-4	0.888	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19570167	2R_19570167_SNP [dm3] 2R_23682644_SNP [dm6]	G	C	4.359e^-4	0.888	UPSTREAM St3 INTRON St1	TF binding site mE1_TFBS_chinmo
3L	10733079	3L_10733079_SNP [dm3] 3L_10739979_SNP [dm6]	T	G	4.365e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	10685158	2R_10685158_DEL [dm3] 2R_14797653_DEL [dm6]	TTGTTACATGTCAACAATGA...	A	4.376e^-4	0.888	UPSTREAM kn INTRON kn
2R	10685305	2R_10685305_SNP [dm3] 2R_14797800_SNP [dm6]	C	A	4.376e^-4	0.888	UPSTREAM kn INTRON kn
2R	11564249	2R_11564249_SNP [dm3] 2R_15676744_SNP [dm6]	T	A	4.383e^-4	0.888	UPSTREAM fus DOWNSTREAM CG8207 EXON CR45143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13844353	3L_13844353_SNP [dm3] 3L_13851253_SNP [dm6]	A	T	4.383e^-4	0.888	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	10733089	3L_10733089_INS [dm3] 3L_10739989_INS [dm6]	G	GG	4.385e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	15178166	3R_15178166_SNP [dm3] 3R_19352444_SNP [dm6]	C	A	4.386e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D
2L	22115226	2L_22115226_SNP [dm3] 2L_22115226_SNP [dm6]	A	T	4.399e^-4	0.888	INTERGENIC	transposable element FlyBase
3R	4720039	3R_4720039_SNP [dm3] 3R_8894317_SNP [dm6]	C	A	4.400e^-4	0.888	INTRON pyd	TF binding site mE1_TFBS_Trl
3R	25825531	3R_25825531_INS [dm3] 3R_29999809_INS [dm6]	G	GG	4.405e^-4	0.888	UTR_5_PRIME CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site mE1_TFBS_cad
X	14089993	X_14089993_SNP [dm3] X_14195960_SNP [dm6]	C	T	4.405e^-4	0.888	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	10132719	2L_10132719_DEL [dm3] 2L_10132719_DEL [dm6]	AA	G	4.423e^-4	0.888	INTRON CG44153
2L	15056222	2L_15056222_SNP [dm3] 2L_15056222_SNP [dm6]	A	T	4.424e^-4	0.888	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	18245802	2L_18245802_SNP [dm3] 2L_18245802_SNP [dm6]	A	C	4.429e^-4	0.888	INTRON CG42750
X	12241561	X_12241561_SNP [dm3] X_12347528_SNP [dm6]	A	C	4.433e^-4	0.888	INTERGENIC
2R	10675418	2R_10675418_SNP [dm3] 2R_14787913_SNP [dm6]	T	C	4.444e^-4	0.888	INTRON kn	TF binding site BDTNP1_TFBS_da
3R	16810879	3R_16810879_SNP [dm3] 3R_20985157_SNP [dm6]	A	T	4.469e^-4	0.888	UPSTREAM Calx INTRON Calx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20922246	X_20922246_SNP [dm3] X_21051219_SNP [dm6]	A	G	4.471e^-4	0.888	SYNONYMOUS_CODING CG1518 UPSTREAM snoRNA:Me28S-U3344b DOWNSTREAM scaRNA:MeU2-C28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8043487	2L_8043487_SNP [dm3] 2L_8043487_SNP [dm6]	A	T	4.472e^-4	0.888	UTR_5_PRIME CG7466 UPSTREAM RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2949570	2L_2949570_SNP [dm3] 2L_2949570_SNP [dm6]	T	C	4.473e^-4	0.888	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8018297	3L_8018297_SNP [dm3] 3L_8025197_SNP [dm6]	T	G	4.473e^-4	0.888	INTRON nmo
2L	7320736	2L_7320736_DEL [dm3] 2L_7320736_DEL [dm6]	AGTACTCTATATAATA...	A	4.474e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8334982	2L_8334982_SNP [dm3] 2L_8334982_SNP [dm6]	G	A	4.478e^-4	0.888	INTERGENIC
3L	17392549	3L_17392549_SNP [dm3] 3L_17399449_SNP [dm6]	T	C	4.479e^-4	0.888	DOWNSTREAM noe INTRON blot
2R	15198356	2R_15198356_SNP [dm3] 2R_19310851_SNP [dm6]	A	T	4.485e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2L	8750843	2L_8750843_SNP [dm3] 2L_8750843_SNP [dm6]	C	T	4.491e^-4	0.888	DOWNSTREAM CG45307 INTERGENIC
3R	18740415	3R_18740415_INS [dm3] 3R_22914693_INS [dm6]	A	AGGCACA	4.501e^-4	0.888	INTRON klg
X	18938568	X_18938568_SNP [dm3] X_19044535_SNP [dm6]	T	C	4.504e^-4	0.888	INTERGENIC
2L	13624709	2L_13624709_SNP [dm3] 2L_13624709_SNP [dm6]	A	T	4.505e^-4	0.888	INTRON kuz
3L	9492300	3L_9492300_SNP [dm3] 3L_9499200_SNP [dm6]	C	T	4.516e^-4	0.888	UTR_5_PRIME path
X	3904038	X_3904038_SNP [dm3] X_4010005_SNP [dm6]	A	G	4.520e^-4	0.888	INTERGENIC
X	17153039	X_17153039_DEL [dm3] X_17259006_DEL [dm6]	AGTGGCA	A	4.521e^-4	0.888	UPSTREAM f INTRON f
2L	6289012	2L_6289012_SNP [dm3] 2L_6289012_SNP [dm6]	C	A	4.522e^-4	0.888	INTRON Ddr
2R	15268240	2R_15268240_SNP [dm3] 2R_19380735_SNP [dm6]	T	C	4.524e^-4	0.888	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
2R	16814173	2R_16814173_SNP [dm3] 2R_20926668_SNP [dm6]	A	G	4.524e^-4	0.888	INTRON Rx
3R	23531998	3R_23531998_SNP [dm3] 3R_27706276_SNP [dm6]	G	A	4.525e^-4	0.888	UTR_5_PRIME CG12428 UPSTREAM CG12877 & 1 other INTRON CG12428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	14654503	X_14654503_SNP [dm3] X_14760470_SNP [dm6]	A	G	4.531e^-4	0.888	INTRON CG15890
2L	14749082	2L_14749082_SNP [dm3] 2L_14749082_SNP [dm6]	C	A	4.538e^-4	0.888	INTERGENIC
2L	14749084	2L_14749084_SNP [dm3] 2L_14749084_SNP [dm6]	T	C	4.538e^-4	0.888	INTERGENIC
3R	21336083	3R_21336083_SNP [dm3] 3R_25510361_SNP [dm6]	A	C	4.543e^-4	0.888	INTERGENIC
3R	21336090	3R_21336090_SNP [dm3] 3R_25510368_SNP [dm6]	A	G	4.543e^-4	0.888	INTERGENIC
3L	13648540	3L_13648540_SNP [dm3] 3L_13655440_SNP [dm6]	G	C	4.545e^-4	0.888	INTRON bru-3
3R	20957357	3R_20957357_SNP [dm3] 3R_25131635_SNP [dm6]	C	T	4.546e^-4	0.888	UTR_5_PRIME Bili DOWNSTREAM Clbn INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16040375	3R_16040375_SNP [dm3] 3R_20214653_SNP [dm6]	G	A	4.556e^-4	0.888	INTRON Nlg4
2L	1977754	2L_1977754_SNP [dm3] 2L_1977754_SNP [dm6]	A	G	4.560e^-4	0.888	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16642232	X_16642232_SNP [dm3] X_16748199_SNP [dm6]	T	C	4.561e^-4	0.888	INTRON CG9634
X	16642234	X_16642234_SNP [dm3] X_16748201_SNP [dm6]	T	C	4.561e^-4	0.888	INTRON CG9634
2L	11748633	2L_11748633_SNP [dm3] 2L_11748633_SNP [dm6]	C	T	4.576e^-4	0.888	INTERGENIC
2R	16450450	2R_16450450_SNP [dm3] 2R_20562945_SNP [dm6]	C	G	4.577e^-4	0.888	UTR_5_PRIME CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other
2L	5705216	2L_5705216_SNP [dm3] 2L_5705216_SNP [dm6]	T	A	4.579e^-4	0.888	INTERGENIC
3L	10487937	3L_10487937_SNP [dm3] 3L_10494837_SNP [dm6]	T	G	4.579e^-4	0.888	INTRON A2bp1
X	16010179	X_16010179_INS [dm3] X_16116146_INS [dm6]	T	AA	4.592e^-4	0.888	INTERGENIC
2L	15565724	2L_15565724_INS [dm3] 2L_15565724_INS [dm6]	T	TT	4.594e^-4	0.888	INTRON kek3
2L	22164904	2L_22164904_SNP [dm3] 2L_22164904_SNP [dm6]	G	A	4.595e^-4	0.888	UTR_3_PRIME CG42748 DOWNSTREAM Clamp & 1 other
2R	1714379	2R_1714379_SNP [dm3] 2R_5826874_SNP [dm6]	A	G	4.600e^-4	0.888	INTRON dpr12
2L	13695639	2L_13695639_SNP [dm3] 2L_13695639_SNP [dm6]	C	G	4.612e^-4	0.888	INTRON CG31814
X	12138528	X_12138528_SNP [dm3] X_12244495_SNP [dm6]	T	A	4.615e^-4	0.888	INTRON Ten-a
3L	12586013	3L_12586013_SNP [dm3] 3L_12592913_SNP [dm6]	T	C	4.621e^-4	0.888	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12586021	3L_12586021_SNP [dm3] 3L_12592921_SNP [dm6]	T	A	4.621e^-4	0.888	INTRON ara	TF binding site mE1_TFBS_HSA
X	16710644	X_16710644_SNP [dm3] X_16816611_SNP [dm6]	C	A	4.639e^-4	0.888	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	10658898	3R_10658898_SNP [dm3] 3R_14833176_SNP [dm6]	C	T	4.640e^-4	0.888	INTRON btsz
2L	8337361	2L_8337361_SNP [dm3] 2L_8337361_SNP [dm6]	G	A	4.649e^-4	0.888	UPSTREAM CG14274 INTERGENIC
3R	16872520	3R_16872520_SNP [dm3] 3R_21046798_SNP [dm6]	C	T	4.651e^-4	0.888	NON_SYNONYMOUS_CODING CG31207 UPSTREAM CG31189 DOWNSTREAM CG7079
X	9202025	X_9202025_SNP [dm3] X_9307992_SNP [dm6]	G	T	4.653e^-4	0.888	INTERGENIC
3R	19366798	3R_19366798_SNP [dm3] 3R_23541076_SNP [dm6]	A	G	4.668e^-4	0.888	INTERGENIC
3R	26948668	3R_26948668_SNP [dm3] 3R_31122946_SNP [dm6]	A	G	4.677e^-4	0.888	SYNONYMOUS_CODING Prosalpha3T
2R	7328404	2R_7328404_SNP [dm3] 2R_11440899_SNP [dm6]	G	T	4.679e^-4	0.888	INTRON CG7777
2R	4559966	2R_4559966_SNP [dm3] 2R_8672461_SNP [dm6]	T	C	4.683e^-4	0.888	INTRON Acsl
3L	4900706	3L_4900706_SNP [dm3] 3L_4900706_SNP [dm6]	A	C	4.693e^-4	0.888	UTR_3_PRIME CG13704
2L	22171242	2L_22171242_SNP [dm3] 2L_22171242_SNP [dm6]	T	G	4.695e^-4	0.888	INTERGENIC
2R	15198512	2R_15198512_SNP [dm3] 2R_19311007_SNP [dm6]	C	T	4.709e^-4	0.888	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
X	14921794	X_14921794_SNP [dm3] X_15027761_SNP [dm6]	C	T	4.714e^-4	0.888	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13983851	2L_13983851_SNP [dm3] 2L_13983851_SNP [dm6]	G	A	4.741e^-4	0.888	SYNONYMOUS_CODING rk DOWNSTREAM NimC2	TF binding site mE1_TFBS_chinmo
3R	21330790	3R_21330790_SNP [dm3] 3R_25505068_SNP [dm6]	C	A	4.746e^-4	0.888	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8033181	3L_8033181_SNP [dm3] 3L_8040081_SNP [dm6]	A	T	4.752e^-4	0.888	INTRON nmo
3L	14336491	3L_14336491_SNP [dm3] 3L_14343391_SNP [dm6]	G	C	4.759e^-4	0.888	INTRON fz
2L	20470225	2L_20470225_SNP [dm3] 2L_20470225_SNP [dm6]	C	G	4.760e^-4	0.888	INTRON CR44980
2R	19700425	2R_19700425_SNP [dm3] 2R_23812902_SNP [dm6]	A	G	4.761e^-4	0.888	SYNONYMOUS_CODING CG4797 UPSTREAM Nxt1 EXON CR44807	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18538544	2R_18538544_SNP [dm3] 2R_22651039_SNP [dm6]	G	A	4.762e^-4	0.888	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26392471	3R_26392471_SNP [dm3] 3R_30566749_SNP [dm6]	T	G	4.770e^-4	0.888	INTRON tmod	TF binding site BDTNP1_TFBS_dl
3L	13612593	3L_13612593_INS [dm3] 3L_13619493_INS [dm6]	T	TT	4.772e^-4	0.888	INTRON bru-3
2L	1390617	2L_1390617_SNP [dm3] 2L_1390617_SNP [dm6]	G	A	4.775e^-4	0.888	INTRON lea
X	19608743	X_19608743_DEL [dm3] X_19714710_DEL [dm6]	CGC	C	4.776e^-4	0.888	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7492825	2L_7492825_SNP [dm3] 2L_7492825_SNP [dm6]	C	T	4.787e^-4	0.888	INTRON Ziz
2L	5947467	2L_5947467_SNP [dm3] 2L_5947467_SNP [dm6]	T	C	4.792e^-4	0.888	UTR_3_PRIME Gpdh DOWNSTREAM CR44986 INTRON Gpdh
3R	16195275	3R_16195275_SNP [dm3] 3R_20369553_SNP [dm6]	T	A	4.797e^-4	0.888	INTERGENIC
3L	2206845	3L_2206845_SNP [dm3] 3L_2206845_SNP [dm6]	G	A	4.797e^-4	0.888	INTERGENIC
X	19281581	X_19281581_SNP [dm3] X_19387548_SNP [dm6]	C	T	4.798e^-4	0.888	INTRON kek5
2L	15965506	2L_15965506_SNP [dm3] 2L_15965506_SNP [dm6]	T	G	4.808e^-4	0.888	INTERGENIC
3L	8654054	3L_8654054_DEL [dm3] 3L_8660954_DEL [dm6]	CGCATC	C	4.810e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11558083	2L_11558083_SNP [dm3] 2L_11558083_SNP [dm6]	T	C	4.819e^-4	0.888	INTERGENIC
2L	9894195	2L_9894195_SNP [dm3] 2L_9894195_SNP [dm6]	G	T	4.828e^-4	0.888	UPSTREAM mtDNA-helicase & 1 other DOWNSTREAM snoRNA:U14:30Ea & 2 others INTRON Uhg2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18074802	3R_18074802_SNP [dm3] 3R_22249080_SNP [dm6]	A	T	4.833e^-4	0.888	INTRON SKIP
X	20879669	X_20879669_SNP [dm3] X_21008642_SNP [dm6]	G	T	4.839e^-4	0.888	INTERGENIC
2R	14950735	2R_14950735_SNP [dm3] 2R_19063230_SNP [dm6]	T	G	4.841e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22213465	3R_22213465_SNP [dm3] 3R_26387743_SNP [dm6]	G	A	4.853e^-4	0.888	INTERGENIC
3R	10211916	3R_10211916_SNP [dm3] 3R_14386194_SNP [dm6]	A	T	4.855e^-4	0.888	INTERGENIC
2L	17546093	2L_17546093_SNP [dm3] 2L_17546093_SNP [dm6]	T	C	4.857e^-4	0.888	INTERGENIC
2L	19364624	2L_19364624_INS [dm3] 2L_19364624_INS [dm6]	A	ATCAATA	4.878e^-4	0.888	INTRON CG13086
2R	16414333	2R_16414333_SNP [dm3] 2R_20526828_SNP [dm6]	C	A	4.889e^-4	0.888	DOWNSTREAM CG13422 INTERGENIC
2R	16414343	2R_16414343_SNP [dm3] 2R_20526838_SNP [dm6]	C	A	4.889e^-4	0.888	DOWNSTREAM CG13422 INTERGENIC
3L	8031537	3L_8031537_SNP [dm3] 3L_8038437_SNP [dm6]	A	G	4.892e^-4	0.888	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	6580244	2L_6580244_SNP [dm3] 2L_6580244_SNP [dm6]	A	C	4.893e^-4	0.888	INTRON CG11319
2L	6580249	2L_6580249_SNP [dm3] 2L_6580249_SNP [dm6]	G	A	4.893e^-4	0.888	INTRON CG11319
X	11232628	X_11232628_SNP [dm3] X_11338595_SNP [dm6]	T	C	4.894e^-4	0.888	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
X	16010184	X_16010184_SNP [dm3] X_16116151_SNP [dm6]	A	T	4.895e^-4	0.888	INTERGENIC
X	14301716	X_14301716_SNP [dm3] X_14407683_SNP [dm6]	A	G	4.896e^-4	0.888	INTRON dpr8
3L	10873584	3L_10873584_SNP [dm3] 3L_10880484_SNP [dm6]	A	G	4.898e^-4	0.888	DOWNSTREAM CG6409 & 1 other INTERGENIC
3R	19807373	3R_19807373_SNP [dm3] 3R_23981651_SNP [dm6]	C	A	4.905e^-4	0.888	DOWNSTREAM CG31140 INTRON CG31140
X	19872321	X_19872321_SNP [dm3] X_19978288_SNP [dm6]	C	T	4.917e^-4	0.888	INTERGENIC
3R	15754069	3R_15754069_SNP [dm3] 3R_19928347_SNP [dm6]	G	A	4.918e^-4	0.888	SYNONYMOUS_CODING CG4459 DOWNSTREAM Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15754210	3R_15754210_SNP [dm3] 3R_19928488_SNP [dm6]	A	G	4.918e^-4	0.888	SYNONYMOUS_CODING CG4459 DOWNSTREAM Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16642219	X_16642219_SNP [dm3] X_16748186_SNP [dm6]	A	T	4.918e^-4	0.888	INTRON CG9634
2R	17976599	2R_17976599_SNP [dm3] 2R_22089094_SNP [dm6]	G	A	4.922e^-4	0.888	UPSTREAM CG13502 DOWNSTREAM CG43393 INTERGENIC
2L	19195026	2L_19195026_SNP [dm3] 2L_19195026_SNP [dm6]	T	G	4.924e^-4	0.888	INTRON drl	regulatory region REDfly_CRMs
2L	6661847	2L_6661847_SNP [dm3] 2L_6661847_SNP [dm6]	A	G	4.925e^-4	0.888	UTR_3_PRIME CG11070 DOWNSTREAM CG13771	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3515761	2R_3515761_SNP [dm3] 2R_7628256_SNP [dm6]	G	C	4.927e^-4	0.888	UPSTREAM CG43340 INTRON CG43340
3L	10487964	3L_10487964_SNP [dm3] 3L_10494864_SNP [dm6]	T	G	4.937e^-4	0.888	INTRON A2bp1
2R	9501850	2R_9501850_SNP [dm3] 2R_13614345_SNP [dm6]	C	A	4.947e^-4	0.888	INTERGENIC
3R	25121826	3R_25121826_SNP [dm3] 3R_29296104_SNP [dm6]	T	A	4.955e^-4	0.888	SYNONYMOUS_CODING CG14506
2R	16414339	2R_16414339_SNP [dm3] 2R_20526834_SNP [dm6]	C	A	4.958e^-4	0.888	DOWNSTREAM CG13422 INTERGENIC
2L	8576734	2L_8576734_SNP [dm3] 2L_8576734_SNP [dm6]	T	C	4.962e^-4	0.888	INTRON Sema-1a	TF binding site mE1_TFBS_HSA
3L	7606740	3L_7606740_INS [dm3] 3L_7613640_INS [dm6]	G	GC	4.968e^-4	0.888	INTRON CG33275
2L	16864963	2L_16864963_SNP [dm3] 2L_16864963_SNP [dm6]	C	A	4.969e^-4	0.888	INTERGENIC
2L	5839697	2L_5839697_SNP [dm3] 2L_5839697_SNP [dm6]	T	C	4.972e^-4	0.888	INTRON TrissinR
2L	15568957	2L_15568957_SNP [dm3] 2L_15568957_SNP [dm6]	C	T	4.974e^-4	0.888	INTRON kek3
3R	20947478	3R_20947478_SNP [dm3] 3R_25121756_SNP [dm6]	T	C	4.986e^-4	0.888	INTRON CG31108 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	19223966	2R_19223966_SNP [dm3] 2R_23336443_SNP [dm6]	G	A	4.998e^-4	0.888	INTERGENIC
3R	25617591	3R_25617591_SNP [dm3] 3R_29791869_SNP [dm6]	C	T	5.002e^-4	0.888	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17152790	X_17152790_SNP [dm3] X_17258757_SNP [dm6]	T	C	5.003e^-4	0.888	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18599574	X_18599574_SNP [dm3] X_18705541_SNP [dm6]	T	C	5.012e^-4	0.888	INTERGENIC
2L	9446940	2L_9446940_SNP [dm3] 2L_9446940_SNP [dm6]	G	A	5.015e^-4	0.888	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	15108708	3R_15108708_SNP [dm3] 3R_19282986_SNP [dm6]	G	A	5.024e^-4	0.888	INTERGENIC
3R	14192075	3R_14192075_SNP [dm3] 3R_18366353_SNP [dm6]	C	T	5.033e^-4	0.888	UPSTREAM Nup43 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17307538	3R_17307538_SNP [dm3] 3R_21481816_SNP [dm6]	G	T	5.035e^-4	0.888	UPSTREAM CG7922 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	15351407	2L_15351407_SNP [dm3] 2L_15351407_SNP [dm6]	C	T	5.054e^-4	0.888	INTERGENIC
3R	26485916	3R_26485916_SNP [dm3] 3R_30660194_SNP [dm6]	C	T	5.061e^-4	0.888	INTERGENIC
2R	8514950	2R_8514950_SNP [dm3] 2R_12627445_SNP [dm6]	T	C	5.066e^-4	0.888	INTRON CG17760
2R	9756257	2R_9756257_SNP [dm3] 2R_13868752_SNP [dm6]	A	T	5.066e^-4	0.888	INTRON shot
3R	17065083	3R_17065083_SNP [dm3] 3R_21239361_SNP [dm6]	A	T	5.073e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
X	3215698	X_3215698_SNP [dm3] X_3321665_SNP [dm6]	C	A	5.078e^-4	0.888	INTRON CR44886 & 1 other
2R	3578051	2R_3578051_SNP [dm3] 2R_7690546_SNP [dm6]	C	A	5.082e^-4	0.888	INTRON CG1399
2R	3578052	2R_3578052_SNP [dm3] 2R_7690547_SNP [dm6]	A	T	5.082e^-4	0.888	INTRON CG1399
3L	7158752	3L_7158752_SNP [dm3] 3L_7165652_SNP [dm6]	G	T	5.086e^-4	0.888	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Vial phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results