DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.545e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01361

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1994 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13111356	2R_13111356_SNP [dm3] 2R_17223851_SNP [dm6]	C	T	1.461e^-6	0.884	INTRON mbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20259274	X_20259274_SNP [dm3] X_20388247_SNP [dm6]	C	G	3.459e^-6	0.884	INTERGENIC
2R	4402811	2R_4402811_DEL [dm3] 2R_8515306_DEL [dm6]	TT	T	3.675e^-6	0.884	INTRON mtt
2L	64366	2L_64366_SNP [dm3] 2L_64366_SNP [dm6]	C	T	5.441e^-6	0.884	INTRON Cda5	transposable element FlyBase
X	20240442	X_20240442_SNP [dm3] X_20369415_SNP [dm6]	G	T	5.634e^-6	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4402936	2R_4402936_SNP [dm3] 2R_8515431_SNP [dm6]	C	G	6.364e^-6	0.884	INTRON mtt
2R	13022103	2R_13022103_SNP [dm3] 2R_17134598_SNP [dm6]	G	A	6.433e^-6	0.884	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
3L	4197333	3L_4197333_SNP [dm3] 3L_4197333_SNP [dm6]	T	C	7.010e^-6	0.884	SYNONYMOUS_CODING CG43367
3R	10427470	3R_10427470_SNP [dm3] 3R_14601748_SNP [dm6]	T	G	7.048e^-6	0.884	UPSTREAM stumps INTRON stumps
X	15288974	X_15288974_INS [dm3] X_15394941_INS [dm6]	T	TGA	7.946e^-6	0.884	INTRON Cngl
2L	15878073	2L_15878073_SNP [dm3] 2L_15878073_SNP [dm6]	A	T	8.957e^-6	0.884	NON_SYNONYMOUS_CODING CG7653
2R	9787648	2R_9787648_SNP [dm3] 2R_13900143_SNP [dm6]	G	A	1.271e^-5	0.884	INTRON shot
3L	6896801	3L_6896801_SNP [dm3] 3L_6903701_SNP [dm6]	A	C	1.338e^-5	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9787663	2R_9787663_SNP [dm3] 2R_13900158_SNP [dm6]	C	T	1.352e^-5	0.884	INTRON shot
2L	59826	2L_59826_SNP [dm3] 2L_59826_SNP [dm6]	G	C	1.405e^-5	0.884	UPSTREAM Cda5 INTRON Cda5
2L	61453	2L_61453_SNP [dm3] 2L_61453_SNP [dm6]	C	T	1.405e^-5	0.884	INTRON Cda5
2L	57639	2L_57639_SNP [dm3] 2L_57639_SNP [dm6]	C	A	1.433e^-5	0.884	INTRON Cda5
2L	58008	2L_58008_SNP [dm3] 2L_58008_SNP [dm6]	T	A	1.534e^-5	0.884	INTRON Cda5
2L	58906	2L_58906_SNP [dm3] 2L_58906_SNP [dm6]	A	T	1.569e^-5	0.884	INTRON Cda5
3R	7215629	3R_7215629_SNP [dm3] 3R_11389907_SNP [dm6]	C	G	1.649e^-5	0.884	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	66417	2L_66417_SNP [dm3] 2L_66417_SNP [dm6]	G	A	1.740e^-5	0.884	UPSTREAM dbr DOWNSTREAM CR45339 EXON CR45340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	5705050	X_5705050_DEL [dm3] X_5811017_DEL [dm6]	GG	G	1.757e^-5	0.884	DOWNSTREAM Prosbeta2R1 & 1 other INTERGENIC
2L	21096807	2L_21096807_SNP [dm3] 2L_21096807_SNP [dm6]	T	C	1.821e^-5	0.884	UPSTREAM CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21499153	X_21499153_SNP [dm3] X_21628126_SNP [dm6]	T	C	1.889e^-5	0.884	INTRON DIP1	transposable element FlyBase
2L	15478133	2L_15478133_SNP [dm3] 2L_15478133_SNP [dm6]	T	A	1.929e^-5	0.884	UTR_5_PRIME sna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9355731	2R_9355731_SNP [dm3] 2R_13468226_SNP [dm6]	T	G	1.986e^-5	0.884	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	15478090	2L_15478090_SNP [dm3] 2L_15478090_SNP [dm6]	T	C	2.018e^-5	0.884	SYNONYMOUS_CODING sna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21379555	2L_21379555_SNP [dm3] 2L_21379555_SNP [dm6]	C	T	2.029e^-5	0.884	UPSTREAM nrv3 INTERGENIC
X	21499662	X_21499662_SNP [dm3] X_21628635_SNP [dm6]	T	G	2.110e^-5	0.884	NON_SYNONYMOUS_CODING DIP1 UTR_5_PRIME DIP1	TF binding site mE1_TFBS_sens
2L	15478156	2L_15478156_SNP [dm3] 2L_15478156_SNP [dm6]	G	C	2.124e^-5	0.884	UTR_5_PRIME sna	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15399450	3R_15399450_DEL [dm3] 3R_19573728_DEL [dm6]	TTAGAT	T	2.151e^-5	0.884	INTRON Dys
3L	17165204	3L_17165204_SNP [dm3] 3L_17172104_SNP [dm6]	G	T	2.270e^-5	0.884	INTRON Rbp6
2L	12833995	2L_12833995_SNP [dm3] 2L_12833995_SNP [dm6]	T	A	2.275e^-5	0.884	INTERGENIC
2L	20966076	2L_20966076_SNP [dm3] 2L_20966076_SNP [dm6]	G	T	2.424e^-5	0.884	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
2R	7761162	2R_7761162_SNP [dm3] 2R_11873657_SNP [dm6]	A	T	2.569e^-5	0.884	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_cad
X	20563396	X_20563396_DEL [dm3] X_20692369_DEL [dm6]	ACATTAAGTTA...	A	2.601e^-5	0.884	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16272948	3R_16272948_SNP [dm3] 3R_20447226_SNP [dm6]	C	T	2.660e^-5	0.884	INTRON Gfrl
2L	2595977	2L_2595977_SNP [dm3] 2L_2595977_SNP [dm6]	G	T	2.752e^-5	0.884	INTERGENIC
X	20240521	X_20240521_SNP [dm3] X_20369494_SNP [dm6]	G	A	2.798e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9350645	2R_9350645_SNP [dm3] 2R_13463140_SNP [dm6]	A	T	2.907e^-5	0.884	INTRON arr
2L	18616626	2L_18616626_SNP [dm3] 2L_18616626_SNP [dm6]	G	A	3.005e^-5	0.884	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10620003	3L_10620003_SNP [dm3] 3L_10626903_SNP [dm6]	T	C	3.039e^-5	0.884	SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
3L	6651444	3L_6651444_SNP [dm3] 3L_6658344_SNP [dm6]	G	A	3.070e^-5	0.884	INTERGENIC
3L	1561369	3L_1561369_DEL [dm3] 3L_1561369_DEL [dm6]	TGCT	T	3.106e^-5	0.884	CODON_DELETION CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15938148	2L_15938148_SNP [dm3] 2L_15938148_SNP [dm6]	G	A	3.152e^-5	0.884	INTRON beat-Ib
X	20247888	X_20247888_INS [dm3] X_20376861_INS [dm6]	A	AACCAA	3.161e^-5	0.884	UPSTREAM CG12679 INTERGENIC
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	3.293e^-5	0.884	INTRON Drep-3
X	21337366	X_21337366_SNP [dm3] X_21466339_SNP [dm6]	T	C	3.306e^-5	0.884	DOWNSTREAM CR45507 INTERGENIC
X	21499300	X_21499300_SNP [dm3] X_21628273_SNP [dm6]	C	T	3.325e^-5	0.884	INTRON DIP1
2R	9437976	2R_9437976_SNP [dm3] 2R_13550471_SNP [dm6]	T	A	3.349e^-5	0.884	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	6651484	3L_6651484_SNP [dm3] 3L_6658384_SNP [dm6]	C	A	3.400e^-5	0.884	INTERGENIC
3L	6651485	3L_6651485_SNP [dm3] 3L_6658385_SNP [dm6]	C	A	3.400e^-5	0.884	INTERGENIC
X	21499083	X_21499083_SNP [dm3] X_21628056_SNP [dm6]	G	A	3.417e^-5	0.884	INTRON DIP1	transposable element FlyBase
3L	6072057	3L_6072057_SNP [dm3] 3L_6078957_SNP [dm6]	C	G	3.429e^-5	0.884	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
2R	12542546	2R_12542546_SNP [dm3] 2R_16655041_SNP [dm6]	G	A	3.436e^-5	0.884	SYNONYMOUS_CODING Nach DOWNSTREAM Picot
2L	3649142	2L_3649142_SNP [dm3] 2L_3649142_SNP [dm6]	A	C	3.520e^-5	0.884	INTRON for
X	21499419	X_21499419_SNP [dm3] X_21628392_SNP [dm6]	T	C	3.580e^-5	0.884	SYNONYMOUS_CODING DIP1
2L	6533330	2L_6533330_SNP [dm3] 2L_6533330_SNP [dm6]	G	T	3.585e^-5	0.884	INTRON eya
3R	6119107	3R_6119107_SNP [dm3] 3R_10293385_SNP [dm6]	G	C	3.612e^-5	0.884	NON_SYNONYMOUS_CODING CG43143
3R	17784420	3R_17784420_SNP [dm3] 3R_21958698_SNP [dm6]	G	T	3.667e^-5	0.884	INTRON Eip93F
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	3.739e^-5	0.884	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
2L	18764989	2L_18764989_SNP [dm3] 2L_18764989_SNP [dm6]	G	A	3.832e^-5	0.884	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	22281667	X_22281667_SNP [dm3] X_22879831_SNP [dm6]	T	A	3.841e^-5	0.884	INTRON CG42346	TF binding site BDTNP1_TFBS_dl
X	20962387	X_20962387_SNP [dm3] X_21091360_SNP [dm6]	C	T	3.864e^-5	0.884	INTERGENIC
X	20240140	X_20240140_SNP [dm3] X_20369113_SNP [dm6]	T	C	3.899e^-5	0.884	INTERGENIC
2L	1550168	2L_1550168_SNP [dm3] 2L_1550168_SNP [dm6]	A	G	3.914e^-5	0.884	INTERGENIC
2L	15938149	2L_15938149_SNP [dm3] 2L_15938149_SNP [dm6]	G	T	3.919e^-5	0.884	INTRON beat-Ib
X	21499232	X_21499232_SNP [dm3] X_21628205_SNP [dm6]	G	T	3.969e^-5	0.884	INTRON DIP1	transposable element FlyBase
3L	6896390	3L_6896390_SNP [dm3] 3L_6903290_SNP [dm6]	G	A	4.122e^-5	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	15007337	2R_15007337_SNP [dm3] 2R_19119832_SNP [dm6]	G	A	4.139e^-5	0.884	INTRON 5-HT1A	insulator Insulator_Class_II.mE01
2R	19537859	2R_19537859_SNP [dm3] 2R_23650336_SNP [dm6]	A	G	4.196e^-5	0.884	INTRON retn	TF binding site BDTNP1_TFBS_twi
2L	10505745	2L_10505745_SNP [dm3] 2L_10505745_SNP [dm6]	C	G	4.201e^-5	0.884	UPSTREAM CR44224 INTRON Myo31DF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16273069	3R_16273069_SNP [dm3] 3R_20447347_SNP [dm6]	A	T	4.264e^-5	0.884	INTRON Gfrl
2L	78037	2L_78037_SNP [dm3] 2L_78037_SNP [dm6]	G	A	4.351e^-5	0.884	DOWNSTREAM CG11374 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21501132	X_21501132_SNP [dm3] X_21630105_SNP [dm6]	T	A	4.376e^-5	0.884	UTR_5_PRIME DIP1 UPSTREAM CR44712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	826794	2L_826794_SNP [dm3] 2L_826794_SNP [dm6]	C	A	4.434e^-5	0.884	UPSTREAM CG3862 INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	826795	2L_826795_SNP [dm3] 2L_826795_SNP [dm6]	C	A	4.434e^-5	0.884	UPSTREAM CG3862 INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14963634	X_14963634_SNP [dm3] X_15069601_SNP [dm6]	T	A	4.559e^-5	0.884	UTR_3_PRIME Lsd-2 DOWNSTREAM dob
3L	7948738	3L_7948738_SNP [dm3] 3L_7955638_SNP [dm6]	T	C	4.570e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12781527	3R_12781527_SNP [dm3] 3R_16955805_SNP [dm6]	G	A	4.669e^-5	0.884	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	7749344	2L_7749344_SNP [dm3] 2L_7749344_SNP [dm6]	C	A	4.747e^-5	0.884	INTERGENIC
2L	12140986	2L_12140986_SNP [dm3] 2L_12140986_SNP [dm6]	C	T	4.829e^-5	0.884	DOWNSTREAM Gr33a INTERGENIC
2L	15442591	2L_15442591_SNP [dm3] 2L_15442591_SNP [dm6]	T	G	4.854e^-5	0.884	DOWNSTREAM CR44862 INTERGENIC
2L	19195099	2L_19195099_SNP [dm3] 2L_19195099_SNP [dm6]	C	A	4.964e^-5	0.884	INTRON drl	regulatory region REDfly_CRMs
3R	16276402	3R_16276402_SNP [dm3] 3R_20450680_SNP [dm6]	G	A	4.974e^-5	0.884	UPSTREAM Gfrl INTRON Gfrl
3R	7219774	3R_7219774_SNP [dm3] 3R_11394052_SNP [dm6]	A	G	5.049e^-5	0.884	UTR_3_PRIME pros DOWNSTREAM pros
3L	18401223	3L_18401223_INS [dm3] 3L_18408123_INS [dm6]	A	AA	5.053e^-5	0.884	INTERGENIC	regulatory region REDfly_CRMs
3R	17380915	3R_17380915_SNP [dm3] 3R_21555193_SNP [dm6]	A	C	5.135e^-5	0.884	INTRON slou
X	21501125	X_21501125_SNP [dm3] X_21630098_SNP [dm6]	T	A	5.173e^-5	0.884	UTR_5_PRIME DIP1 UPSTREAM CR44712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	1206785	2L_1206785_SNP [dm3] 2L_1206785_SNP [dm6]	C	T	5.234e^-5	0.884	INTERGENIC
3L	15840969	3L_15840969_DEL [dm3] 3L_15847869_DEL [dm6]	TG	T	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841017	3L_15841017_SNP [dm3] 3L_15847917_SNP [dm6]	T	G	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841019	3L_15841019_SNP [dm3] 3L_15847919_SNP [dm6]	T	C	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841024	3L_15841024_SNP [dm3] 3L_15847924_SNP [dm6]	G	T	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841026	3L_15841026_DEL [dm3] 3L_15847926_DEL [dm6]	GC	G	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841030	3L_15841030_SNP [dm3] 3L_15847930_SNP [dm6]	T	C	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841049	3L_15841049_SNP [dm3] 3L_15847949_SNP [dm6]	G	T	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15841056	3L_15841056_SNP [dm3] 3L_15847956_SNP [dm6]	G	T	5.292e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15632398	3L_15632398_SNP [dm3] 3L_15639298_SNP [dm6]	T	C	5.368e^-5	0.884	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	242137	2L_242137_SNP [dm3] 2L_242137_SNP [dm6]	G	A	5.422e^-5	0.884	SYNONYMOUS_CODING kis DOWNSTREAM mir-965	TF binding site mE1_TFBS_chinmo
2R	6375363	2R_6375363_SNP [dm3] 2R_10487858_SNP [dm6]	A	G	5.466e^-5	0.884	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10706374	2L_10706374_SNP [dm3] 2L_10706374_SNP [dm6]	T	A	5.529e^-5	0.884	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	68876	2L_68876_SNP [dm3] 2L_68876_SNP [dm6]	A	T	5.544e^-5	0.884	SYNONYMOUS_CODING dbr	TF binding site mE1_TFBS_sens
3L	8831764	3L_8831764_SNP [dm3] 3L_8838664_SNP [dm6]	G	A	5.603e^-5	0.884	SYNONYMOUS_STOP CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da
2L	825918	2L_825918_SNP [dm3] 2L_825918_SNP [dm6]	C	T	5.636e^-5	0.884	UPSTREAM dock & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7895632	2R_7895632_SNP [dm3] 2R_12008127_SNP [dm6]	C	A	5.657e^-5	0.884	INTRON otk
2L	11534895	2L_11534895_SNP [dm3] 2L_11534895_SNP [dm6]	T	G	5.672e^-5	0.884	UPSTREAM CR42743 INTERGENIC
2R	12542543	2R_12542543_SNP [dm3] 2R_16655038_SNP [dm6]	A	G	5.678e^-5	0.884	SYNONYMOUS_CODING Nach DOWNSTREAM Picot
2L	15538338	2L_15538338_SNP [dm3] 2L_15538338_SNP [dm6]	T	A	5.681e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9880204	3R_9880204_SNP [dm3] 3R_14054482_SNP [dm6]	G	A	5.765e^-5	0.884	INTERGENIC
X	21343234	X_21343234_SNP [dm3] X_21472207_SNP [dm6]	T	G	5.776e^-5	0.884	INTERGENIC
3R	7220157	3R_7220157_SNP [dm3] 3R_11394435_SNP [dm6]	T	A	5.798e^-5	0.884	UTR_3_PRIME pros
3R	9880358	3R_9880358_SNP [dm3] 3R_14054636_SNP [dm6]	A	T	5.818e^-5	0.884	INTERGENIC
2L	14505217	2L_14505217_SNP [dm3] 2L_14505217_SNP [dm6]	T	G	5.856e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7739921	2R_7739921_INS [dm3] 2R_11852416_INS [dm6]	T	TT	5.867e^-5	0.884	UPSTREAM Mtor DOWNSTREAM Sln INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
X	20279523	X_20279523_SNP [dm3] X_20408496_SNP [dm6]	C	T	5.886e^-5	0.884	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	5249769	X_5249769_SNP [dm3] X_5355736_SNP [dm6]	T	C	5.967e^-5	0.884	INTRON SK
3L	15840915	3L_15840915_SNP [dm3] 3L_15847815_SNP [dm6]	G	A	6.061e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	25913930	3R_25913930_SNP [dm3] 3R_30088208_SNP [dm6]	T	C	6.071e^-5	0.884	INTRON sima
X	14350541	X_14350541_SNP [dm3] X_14456508_SNP [dm6]	A	T	6.108e^-5	0.884	INTRON dpr8	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1550181	2L_1550181_SNP [dm3] 2L_1550181_SNP [dm6]	C	T	6.114e^-5	0.884	INTERGENIC
3R	15399457	3R_15399457_INS [dm3] 3R_19573735_INS [dm6]	T	TCGAATATC	6.136e^-5	0.884	INTRON Dys
3L	6896516	3L_6896516_SNP [dm3] 3L_6903416_SNP [dm6]	A	G	6.171e^-5	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3L	6896564	3L_6896564_SNP [dm3] 3L_6903464_SNP [dm6]	T	G	6.171e^-5	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
X	20962389	X_20962389_SNP [dm3] X_21091362_SNP [dm6]	T	C	6.183e^-5	0.884	INTERGENIC
3R	15399395	3R_15399395_SNP [dm3] 3R_19573673_SNP [dm6]	C	T	6.185e^-5	0.884	INTRON Dys
3R	2699806	3R_2699806_SNP [dm3] 3R_6874084_SNP [dm6]	T	G	6.199e^-5	0.884	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	15548602	3R_15548602_SNP [dm3] 3R_19722880_SNP [dm6]	C	G	6.246e^-5	0.884	INTERGENIC
3L	16756003	3L_16756003_SNP [dm3] 3L_16762903_SNP [dm6]	T	A	6.305e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8831198	3L_8831198_SNP [dm3] 3L_8838098_SNP [dm6]	C	T	6.315e^-5	0.884	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	18474806	3L_18474806_SNP [dm3] 3L_18481706_SNP [dm6]	T	C	6.586e^-5	0.884	INTERGENIC
2R	16426280	2R_16426280_SNP [dm3] 2R_20538775_SNP [dm6]	A	G	6.640e^-5	0.884	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10991499	2R_10991499_SNP [dm3] 2R_15103994_SNP [dm6]	A	G	6.696e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8821963	3L_8821963_DEL [dm3] 3L_8828863_DEL [dm6]	CCTCGCC	C	6.769e^-5	0.884	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11488078	2L_11488078_INS [dm3] 2L_11488078_INS [dm6]	C	CGTAGCCAC	6.919e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20962460	X_20962460_SNP [dm3] X_21091433_SNP [dm6]	A	T	6.932e^-5	0.884	INTERGENIC
2R	7739953	2R_7739953_SNP [dm3] 2R_11852448_SNP [dm6]	T	G	7.092e^-5	0.884	UPSTREAM Mtor DOWNSTREAM Sln INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	4457282	2R_4457282_SNP [dm3] 2R_8569777_SNP [dm6]	G	C	7.129e^-5	0.884	UPSTREAM Cyp6a13 INTRON Cyp6a15Psi
X	20247902	X_20247902_SNP [dm3] X_20376875_SNP [dm6]	A	G	7.175e^-5	0.884	UPSTREAM CG12679 INTERGENIC
2R	7895645	2R_7895645_SNP [dm3] 2R_12008140_SNP [dm6]	G	A	7.273e^-5	0.884	INTRON otk
X	22281048	X_22281048_SNP [dm3] X_22879212_SNP [dm6]	C	A	7.290e^-5	0.884	SYNONYMOUS_CODING CG42346	TF binding site mE1_TFBS_sens
3R	18972059	3R_18972059_SNP [dm3] 3R_23146337_SNP [dm6]	C	T	7.410e^-5	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7214533	3R_7214533_SNP [dm3] 3R_11388811_SNP [dm6]	T	C	7.427e^-5	0.884	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24088493	3R_24088493_SNP [dm3] 3R_28262771_SNP [dm6]	A	G	7.461e^-5	0.884	SYNONYMOUS_CODING CG43125
2L	15529179	2L_15529179_SNP [dm3] 2L_15529179_SNP [dm6]	G	T	7.478e^-5	0.884	INTERGENIC
3R	13396865	3R_13396865_SNP [dm3] 3R_17571143_SNP [dm6]	T	C	7.506e^-5	0.884	INTERGENIC
X	20962253	X_20962253_SNP [dm3] X_21091226_SNP [dm6]	A	C	7.546e^-5	0.884	INTERGENIC
3L	15839613	3L_15839613_SNP [dm3] 3L_15846513_SNP [dm6]	A	G	7.583e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8443475	2L_8443475_SNP [dm3] 2L_8443475_SNP [dm6]	A	G	7.601e^-5	0.884	NON_SYNONYMOUS_CODING CG31897
2R	9360560	2R_9360560_SNP [dm3] 2R_13473055_SNP [dm6]	C	T	7.665e^-5	0.884	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4494780	2R_4494780_INS [dm3] 2R_8607275_INS [dm6]	A	AA	7.678e^-5	0.884	INTRON rgr	TF binding site BDTNP1_TFBS_twi
X	21345910	X_21345910_SNP [dm3] X_21474883_SNP [dm6]	G	A	7.693e^-5	0.884	INTERGENIC
3L	15840858	3L_15840858_SNP [dm3] 3L_15847758_SNP [dm6]	A	G	7.827e^-5	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	14392376	2R_14392376_SNP [dm3] 2R_18504871_SNP [dm6]	G	C	7.906e^-5	0.884	UTR_3_PRIME GstE11 DOWNSTREAM GstE11	TF binding site mE1_TFBS_HSA
3L	9488332	3L_9488332_SNP [dm3] 3L_9495232_SNP [dm6]	T	C	8.026e^-5	0.884	UTR_3_PRIME path
2R	14188741	2R_14188741_SNP [dm3] 2R_18301236_SNP [dm6]	C	A	8.172e^-5	0.884	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6971417	3L_6971417_SNP [dm3] 3L_6978317_SNP [dm6]	A	G	8.192e^-5	0.884	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25013955	3R_25013955_SNP [dm3] 3R_29188233_SNP [dm6]	A	G	8.237e^-5	0.884	INTRON CG14509
2R	6375371	2R_6375371_SNP [dm3] 2R_10487866_SNP [dm6]	A	T	8.278e^-5	0.884	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9409310	X_9409310_SNP [dm3] X_9515277_SNP [dm6]	T	A	8.399e^-5	0.884	INTRON CG32700
X	20962251	X_20962251_SNP [dm3] X_21091224_SNP [dm6]	G	C	8.495e^-5	0.884	INTERGENIC
3L	6901888	3L_6901888_INS [dm3] 3L_6908788_INS [dm6]	G	GTT	8.594e^-5	0.884	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11202210	3L_11202210_SNP [dm3] 3L_11209110_SNP [dm6]	T	C	8.629e^-5	0.884	SYNONYMOUS_CODING Ube3a	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	74167	2L_74167_SNP [dm3] 2L_74167_SNP [dm6]	A	G	8.633e^-5	0.884	UTR_5_PRIME galectin UPSTREAM CR44987 INTRON galectin
2L	7756403	2L_7756403_SNP [dm3] 2L_7756403_SNP [dm6]	A	G	8.726e^-5	0.884	SYNONYMOUS_CODING CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15581200	3R_15581200_DEL [dm3] 3R_19755478_DEL [dm6]	ATTTGTTCATACCACACATT...	A	8.746e^-5	0.884	INTRON GluClalpha
2L	126959	2L_126959_SNP [dm3] 2L_126959_SNP [dm6]	T	C	8.752e^-5	0.884	INTRON CG11455 & 1 other
2L	129204	2L_129204_SNP [dm3] 2L_129204_SNP [dm6]	A	T	8.752e^-5	0.884	UTR_5_PRIME CG3164 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8830547	3L_8830547_SNP [dm3] 3L_8837447_SNP [dm6]	T	G	8.792e^-5	0.884	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9419430	2R_9419430_INS [dm3] 2R_13531925_INS [dm6]	A	ATATATGG	8.797e^-5	0.884	INTRON Vmat
2R	9437518	2R_9437518_SNP [dm3] 2R_13550013_SNP [dm6]	C	T	8.848e^-5	0.884	SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
3L	9995231	3L_9995231_SNP [dm3] 3L_10002131_SNP [dm6]	C	T	8.909e^-5	0.884	INTRON dpr6
2L	12168106	2L_12168106_SNP [dm3] 2L_12168106_SNP [dm6]	A	T	8.927e^-5	0.884	INTRON CG31760
X	19623263	X_19623263_DEL [dm3] X_19729230_DEL [dm6]	TA	T	8.949e^-5	0.884	UTR_3_PRIME CG12531
3R	22173027	3R_22173027_SNP [dm3] 3R_26347305_SNP [dm6]	T	A	9.022e^-5	0.884	INTRON CG33970
3L	8190959	3L_8190959_SNP [dm3] 3L_8197859_SNP [dm6]	T	G	9.075e^-5	0.884	UTR_5_PRIME Ubc12 UPSTREAM CG8005 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13304670	2R_13304670_SNP [dm3] 2R_17417165_SNP [dm6]	T	A	9.107e^-5	0.884	SYNONYMOUS_CODING cnk
3L	3248706	3L_3248706_SNP [dm3] 3L_3248706_SNP [dm6]	G	A	9.122e^-5	0.884	NON_SYNONYMOUS_CODING CG43389 UPSTREAM CR43626
2L	12168097	2L_12168097_SNP [dm3] 2L_12168097_SNP [dm6]	T	A	9.206e^-5	0.884	INTRON CG31760
X	18383723	X_18383723_SNP [dm3] X_18489690_SNP [dm6]	G	T	9.218e^-5	0.884	UPSTREAM CG15046 INTERGENIC
3L	6971380	3L_6971380_SNP [dm3] 3L_6978280_SNP [dm6]	G	T	9.254e^-5	0.884	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15590971	2R_15590971_SNP [dm3] 2R_19703466_SNP [dm6]	A	G	9.309e^-5	0.884	NON_SYNONYMOUS_CODING Obp56d
2R	13355169	2R_13355169_SNP [dm3] 2R_17467664_SNP [dm6]	C	T	9.328e^-5	0.884	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6651837	3L_6651837_SNP [dm3] 3L_6658737_SNP [dm6]	C	T	9.340e^-5	0.884	INTERGENIC
X	17177845	X_17177845_SNP [dm3] X_17283812_SNP [dm6]	C	A	9.384e^-5	0.884	UTR_3_PRIME CG8661 INTRON CG5445
2R	16128859	2R_16128859_SNP [dm3] 2R_20241354_SNP [dm6]	G	A	9.416e^-5	0.884	NON_SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2L	7749132	2L_7749132_SNP [dm3] 2L_7749132_SNP [dm6]	T	A	9.435e^-5	0.884	INTERGENIC
3R	7219844	3R_7219844_SNP [dm3] 3R_11394122_SNP [dm6]	C	A	9.531e^-5	0.884	UTR_3_PRIME pros DOWNSTREAM pros
2R	10425477	2R_10425477_SNP [dm3] 2R_14537972_SNP [dm6]	G	A	9.574e^-5	0.884	INTRON ttv
2R	4076360	2R_4076360_SNP [dm3] 2R_8188855_SNP [dm6]	C	T	9.580e^-5	0.884	INTRON LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10620084	3L_10620084_SNP [dm3] 3L_10626984_SNP [dm6]	C	T	9.606e^-5	0.884	SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
3R	24614665	3R_24614665_SNP [dm3] 3R_28788943_SNP [dm6]	G	T	9.627e^-5	0.884	UPSTREAM CG34295 INTERGENIC
3R	15399385	3R_15399385_SNP [dm3] 3R_19573663_SNP [dm6]	A	C	9.765e^-5	0.884	INTRON Dys
X	14350390	X_14350390_SNP [dm3] X_14456357_SNP [dm6]	C	T	9.774e^-5	0.884	INTRON dpr8	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	23475578	3R_23475578_SNP [dm3] 3R_27649856_SNP [dm6]	G	A	9.862e^-5	0.884	UTR_5_PRIME tau DOWNSTREAM tau INTRON tau
X	22295085	X_22295085_DEL [dm3] X_22893249_DEL [dm6]	GG	G	9.900e^-5	0.884	INTERGENIC
3R	7222702	3R_7222702_SNP [dm3] 3R_11396980_SNP [dm6]	A	G	9.968e^-5	0.884	UTR_3_PRIME pros	TF binding site mE1_TFBS_HSA
3L	8810225	3L_8810225_SNP [dm3] 3L_8817125_SNP [dm6]	G	T	9.970e^-5	0.884	INTERGENIC
2L	1289948	2L_1289948_SNP [dm3] 2L_1289948_SNP [dm6]	C	T	9.981e^-5	0.884	INTRON robo3
2L	2683182	2L_2683182_SNP [dm3] 2L_2683182_SNP [dm6]	G	A	1.014e^-4	0.884	INTRON CG31690
3R	14329242	3R_14329242_SNP [dm3] 3R_18503520_SNP [dm6]	C	T	1.015e^-4	0.884	INTRON fru
3L	6927861	3L_6927861_SNP [dm3] 3L_6934761_SNP [dm6]	C	T	1.036e^-4	0.884	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
3L	6927867	3L_6927867_SNP [dm3] 3L_6934767_SNP [dm6]	A	T	1.036e^-4	0.884	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
2R	2963586	2R_2963586_SNP [dm3] 2R_7076081_SNP [dm6]	G	A	1.050e^-4	0.884	INTERGENIC
2L	7306552	2L_7306552_SNP [dm3] 2L_7306552_SNP [dm6]	A	T	1.051e^-4	0.884	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco
3R	15399437	3R_15399437_SNP [dm3] 3R_19573715_SNP [dm6]	A	G	1.055e^-4	0.884	INTRON Dys
3L	8834228	3L_8834228_SNP [dm3] 3L_8841128_SNP [dm6]	T	C	1.059e^-4	0.884	INTRON dally
3R	25013456	3R_25013456_SNP [dm3] 3R_29187734_SNP [dm6]	A	T	1.064e^-4	0.884	INTRON CG14509
3R	25013462	3R_25013462_SNP [dm3] 3R_29187740_SNP [dm6]	T	A	1.064e^-4	0.884	INTRON CG14509
3R	17409106	3R_17409106_SNP [dm3] 3R_21583384_SNP [dm6]	T	C	1.069e^-4	0.884	INTRON InR	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	12929574	X_12929574_SNP [dm3] X_13035541_SNP [dm6]	A	G	1.071e^-4	0.884	INTRON rad
X	12929584	X_12929584_SNP [dm3] X_13035551_SNP [dm6]	C	G	1.071e^-4	0.884	INTRON rad
2R	18901800	2R_18901800_SNP [dm3] 2R_23014277_SNP [dm6]	C	G	1.074e^-4	0.884	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
2R	18901822	2R_18901822_SNP [dm3] 2R_23014299_SNP [dm6]	A	T	1.074e^-4	0.884	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
3L	15840987	3L_15840987_SNP [dm3] 3L_15847887_SNP [dm6]	T	A	1.079e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15840992	3L_15840992_INS [dm3] 3L_15847892_INS [dm6]	T	TTT	1.079e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	18058421	3L_18058421_SNP [dm3] 3L_18065321_SNP [dm6]	T	C	1.086e^-4	0.884	UPSTREAM Eip75B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	7945675	2R_7945675_SNP [dm3] 2R_12058170_SNP [dm6]	A	G	1.091e^-4	0.884	INTRON Drep-3
X	9409309	X_9409309_SNP [dm3] X_9515276_SNP [dm6]	T	A	1.099e^-4	0.884	INTRON CG32700
3R	25813173	3R_25813173_SNP [dm3] 3R_29987451_SNP [dm6]	T	C	1.102e^-4	0.884	INTRON CG7896	TF binding site BDTNP1_TFBS_twi
X	9557431	X_9557431_SNP [dm3] X_9663398_SNP [dm6]	G	A	1.111e^-4	0.884	UPSTREAM CG3106 INTERGENIC
2R	7945694	2R_7945694_SNP [dm3] 2R_12058189_SNP [dm6]	A	G	1.114e^-4	0.884	INTRON Drep-3
2L	13589907	2L_13589907_SNP [dm3] 2L_13589907_SNP [dm6]	C	T	1.116e^-4	0.884	INTRON kuz
3L	15840974	3L_15840974_SNP [dm3] 3L_15847874_SNP [dm6]	A	T	1.118e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15840975	3L_15840975_INS [dm3] 3L_15847875_INS [dm6]	G	GGT	1.118e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15840995	3L_15840995_SNP [dm3] 3L_15847895_SNP [dm6]	G	A	1.118e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	4934459	2L_4934459_SNP [dm3] 2L_4934459_SNP [dm6]	G	A	1.118e^-4	0.884	SYNONYMOUS_CODING hoe2
3L	6972610	3L_6972610_SNP [dm3] 3L_6979510_SNP [dm6]	G	T	1.119e^-4	0.884	DOWNSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7467137	2L_7467137_SNP [dm3] 2L_7467137_SNP [dm6]	G	T	1.119e^-4	0.884	INTRON CG6055	TF binding site mE1_TFBS_inv
2L	11534775	2L_11534775_SNP [dm3] 2L_11534775_SNP [dm6]	T	C	1.122e^-4	0.884	UPSTREAM CR42743 INTERGENIC
3L	15840967	3L_15840967_SNP [dm3] 3L_15847867_SNP [dm6]	C	A	1.128e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	16750931	3L_16750931_SNP [dm3] 3L_16757831_SNP [dm6]	A	C	1.137e^-4	0.884	INTERGENIC
3R	9880363	3R_9880363_SNP [dm3] 3R_14054641_SNP [dm6]	A	T	1.137e^-4	0.884	INTERGENIC
3R	19049735	3R_19049735_SNP [dm3] 3R_23224013_SNP [dm6]	A	G	1.140e^-4	0.884	INTRON cnc
2R	11905284	2R_11905284_SNP [dm3] 2R_16017779_SNP [dm6]	T	C	1.141e^-4	0.884	UTR_5_PRIME CG8399 UPSTREAM CG8397
2L	14731362	2L_14731362_SNP [dm3] 2L_14731362_SNP [dm6]	G	C	1.142e^-4	0.884	INTERGENIC
3L	10047908	3L_10047908_SNP [dm3] 3L_10054808_SNP [dm6]	T	C	1.142e^-4	0.884	INTRON dpr6
2R	2496438	2R_2496438_SNP [dm3] 2R_6608933_SNP [dm6]	C	T	1.143e^-4	0.884	INTRON jing	TF binding site BDTNP1_TFBS_dl
X	19443908	X_19443908_SNP [dm3] X_19549875_SNP [dm6]	T	A	1.144e^-4	0.884	INTERGENIC
3R	10205194	3R_10205194_SNP [dm3] 3R_14379472_SNP [dm6]	A	G	1.150e^-4	0.884	INTERGENIC
3L	8828290	3L_8828290_SNP [dm3] 3L_8835190_SNP [dm6]	C	A	1.151e^-4	0.884	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15841005	3L_15841005_SNP [dm3] 3L_15847905_SNP [dm6]	G	A	1.158e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	18972062	3R_18972062_SNP [dm3] 3R_23146340_SNP [dm6]	A	G	1.165e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15840997	3L_15840997_SNP [dm3] 3L_15847897_SNP [dm6]	C	T	1.167e^-4	0.884	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	9419428	2R_9419428_SNP [dm3] 2R_13531923_SNP [dm6]	T	A	1.170e^-4	0.884	INTRON Vmat
2R	7945700	2R_7945700_SNP [dm3] 2R_12058195_SNP [dm6]	T	C	1.177e^-4	0.884	INTRON Drep-3
2R	7945708	2R_7945708_SNP [dm3] 2R_12058203_SNP [dm6]	A	T	1.177e^-4	0.884	INTRON Drep-3
2R	7945716	2R_7945716_SNP [dm3] 2R_12058211_SNP [dm6]	A	G	1.177e^-4	0.884	INTRON Drep-3
3R	16282080	3R_16282080_SNP [dm3] 3R_20456358_SNP [dm6]	A	C	1.177e^-4	0.884	INTRON Gfrl
2L	1973997	2L_1973997_DEL [dm3] 2L_1973997_DEL [dm6]	TCGAATTTATT...	T	1.180e^-4	0.884	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18645308	2L_18645308_SNP [dm3] 2L_18645308_SNP [dm6]	C	T	1.185e^-4	0.884	INTRON MESR3
2L	14365206	2L_14365206_SNP [dm3] 2L_14365206_SNP [dm6]	T	C	1.188e^-4	0.884	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad
2L	1289926	2L_1289926_SNP [dm3] 2L_1289926_SNP [dm6]	T	G	1.207e^-4	0.888	INTRON robo3
2L	9585192	2L_9585192_SNP [dm3] 2L_9585192_SNP [dm6]	A	G	1.209e^-4	0.888	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3L	6972547	3L_6972547_SNP [dm3] 3L_6979447_SNP [dm6]	G	A	1.211e^-4	0.888	DOWNSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24088525	3R_24088525_SNP [dm3] 3R_28262803_SNP [dm6]	T	C	1.213e^-4	0.888	NON_SYNONYMOUS_CODING CG43125
3L	10443712	3L_10443712_SNP [dm3] 3L_10450612_SNP [dm6]	A	C	1.223e^-4	0.89	INTERGENIC
2L	21101423	2L_21101423_SNP [dm3] 2L_21101423_SNP [dm6]	G	C	1.226e^-4	0.89	NON_SYNONYMOUS_CODING CG12050
2L	12209187	2L_12209187_SNP [dm3] 2L_12209187_SNP [dm6]	C	T	1.237e^-4	0.89	SYNONYMOUS_CODING CG31759 INTRON aret
X	20463909	X_20463909_SNP [dm3] X_20592882_SNP [dm6]	A	G	1.241e^-4	0.89	SYNONYMOUS_CODING RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16622663	2R_16622663_SNP [dm3] 2R_20735158_SNP [dm6]	T	C	1.245e^-4	0.89	INTRON dpr
2L	6504159	2L_6504159_SNP [dm3] 2L_6504159_SNP [dm6]	G	C	1.252e^-4	0.89	INTRON CG31637
X	17318330	X_17318330_SNP [dm3] X_17424297_SNP [dm6]	G	A	1.254e^-4	0.89	INTRON CG12994 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3249015	3L_3249015_DEL [dm3] 3L_3249015_DEL [dm6]	AAATAAGCAA	A	1.254e^-4	0.89	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9488322	3L_9488322_SNP [dm3] 3L_9495222_SNP [dm6]	T	G	1.265e^-4	0.89	UTR_3_PRIME path
X	8240401	X_8240401_SNP [dm3] X_8346368_SNP [dm6]	G	C	1.280e^-4	0.89	INTRON nAChRalpha3
2L	18630207	2L_18630207_SNP [dm3] 2L_18630207_SNP [dm6]	A	G	1.286e^-4	0.89	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
X	20962157	X_20962157_SNP [dm3] X_21091130_SNP [dm6]	G	A	1.296e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16210420	2L_16210420_SNP [dm3] 2L_16210420_SNP [dm6]	G	A	1.313e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13782384	2R_13782384_DEL [dm3] 2R_17894879_DEL [dm6]	TG	T	1.331e^-4	0.89	UPSTREAM CG14491 & 1 other INTRON Elk
2L	3977165	2L_3977165_SNP [dm3] 2L_3977165_SNP [dm6]	T	C	1.334e^-4	0.89	INTRON fred
3L	3248759	3L_3248759_SNP [dm3] 3L_3248759_SNP [dm6]	G	T	1.335e^-4	0.89	SYNONYMOUS_CODING CG43389 UPSTREAM CR43626	TF binding site mE1_TFBS_cad
X	21499880	X_21499880_SNP [dm3] X_21628853_SNP [dm6]	A	G	1.335e^-4	0.89	SYNONYMOUS_CODING DIP1 UTR_5_PRIME DIP1 INTRON DIP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9437526	2R_9437526_SNP [dm3] 2R_13550021_SNP [dm6]	T	C	1.338e^-4	0.89	NON_SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
2R	14187473	2R_14187473_SNP [dm3] 2R_18299968_SNP [dm6]	C	A	1.344e^-4	0.89	SYNONYMOUS_CODING CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9861090	2R_9861090_SNP [dm3] 2R_13973585_SNP [dm6]	G	A	1.347e^-4	0.89	UTR_3_PRIME CG6701 UPSTREAM CG18568	TF binding site mE1_TFBS_cad
3L	15767402	3L_15767402_SNP [dm3] 3L_15774302_SNP [dm6]	C	G	1.348e^-4	0.89	INTERGENIC
X	20962263	X_20962263_SNP [dm3] X_21091236_SNP [dm6]	G	A	1.349e^-4	0.89	INTERGENIC
3L	19943896	3L_19943896_SNP [dm3] 3L_19950796_SNP [dm6]	C	T	1.353e^-4	0.89	NON_SYNONYMOUS_CODING CG32219 DOWNSTREAM CG34258 INTRON Ac76E
2R	7945720	2R_7945720_SNP [dm3] 2R_12058215_SNP [dm6]	C	T	1.356e^-4	0.89	INTRON Drep-3
3L	8818921	3L_8818921_SNP [dm3] 3L_8825821_SNP [dm6]	T	C	1.363e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20962238	X_20962238_INS [dm3] X_21091211_INS [dm6]	C	AG	1.365e^-4	0.89	INTERGENIC
2L	21101397	2L_21101397_SNP [dm3] 2L_21101397_SNP [dm6]	C	T	1.365e^-4	0.89	NON_SYNONYMOUS_CODING CG12050
X	22281141	X_22281141_SNP [dm3] X_22879305_SNP [dm6]	T	A	1.371e^-4	0.89	SYNONYMOUS_CODING CG42346
2L	11487947	2L_11487947_SNP [dm3] 2L_11487947_SNP [dm6]	T	C	1.379e^-4	0.89	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25804229	3R_25804229_SNP [dm3] 3R_29978507_SNP [dm6]	C	T	1.381e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17486441	2R_17486441_SNP [dm3] 2R_21598936_SNP [dm6]	A	G	1.383e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16273116	3R_16273116_SNP [dm3] 3R_20447394_SNP [dm6]	G	A	1.388e^-4	0.89	INTRON Gfrl
3L	8191062	3L_8191062_INS [dm3] 3L_8197962_INS [dm6]	C	CCAATGCTTAC...	1.390e^-4	0.89	UTR_5_PRIME Ubc12 UPSTREAM CG8005 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9419434	2R_9419434_SNP [dm3] 2R_13531929_SNP [dm6]	A	G	1.392e^-4	0.89	INTRON Vmat
2R	9360667	2R_9360667_SNP [dm3] 2R_13473162_SNP [dm6]	A	C	1.408e^-4	0.89	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17784407	3R_17784407_SNP [dm3] 3R_21958685_SNP [dm6]	G	T	1.409e^-4	0.89	INTRON Eip93F
X	17450399	X_17450399_SNP [dm3] X_17556366_SNP [dm6]	G	A	1.413e^-4	0.89	INTRON CG43658
3L	10882013	3L_10882013_SNP [dm3] 3L_10888913_SNP [dm6]	C	G	1.423e^-4	0.89	INTERGENIC
3L	8828371	3L_8828371_SNP [dm3] 3L_8835271_SNP [dm6]	G	T	1.437e^-4	0.89	INTRON dally	TF binding site mE1_TFBS_inv
2L	8443158	2L_8443158_SNP [dm3] 2L_8443158_SNP [dm6]	T	A	1.444e^-4	0.89	SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
2L	8443160	2L_8443160_SNP [dm3] 2L_8443160_SNP [dm6]	G	A	1.444e^-4	0.89	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
2L	21096097	2L_21096097_SNP [dm3] 2L_21096097_SNP [dm6]	A	G	1.450e^-4	0.89	UPSTREAM CG34136 INTRON CG12050
X	12844698	X_12844698_SNP [dm3] X_12950665_SNP [dm6]	C	T	1.452e^-4	0.89	UTR_3_PRIME hec DOWNSTREAM fne & 1 other
2L	1979261	2L_1979261_SNP [dm3] 2L_1979261_SNP [dm6]	C	G	1.455e^-4	0.89	INTRON CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10860898	2L_10860898_SNP [dm3] 2L_10860898_SNP [dm6]	G	A	1.457e^-4	0.89	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad
3L	9541952	3L_9541952_SNP [dm3] 3L_9548852_SNP [dm6]	T	A	1.459e^-4	0.89	INTRON CG42673
3R	25019801	3R_25019801_SNP [dm3] 3R_29194079_SNP [dm6]	G	A	1.463e^-4	0.89	INTRON CG14509
2L	12832854	2L_12832854_SNP [dm3] 2L_12832854_SNP [dm6]	T	C	1.465e^-4	0.89	INTERGENIC
3L	8829010	3L_8829010_SNP [dm3] 3L_8835910_SNP [dm6]	T	C	1.473e^-4	0.89	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	6896118	3L_6896118_SNP [dm3] 3L_6903018_SNP [dm6]	C	T	1.480e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9585281	2L_9585281_SNP [dm3] 2L_9585281_SNP [dm6]	T	G	1.492e^-4	0.89	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16538694	3R_16538694_SNP [dm3] 3R_20712972_SNP [dm6]	A	C	1.500e^-4	0.89	INTRON Oamb
2L	244088	2L_244088_SNP [dm3] 2L_244088_SNP [dm6]	A	G	1.511e^-4	0.89	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9066983	X_9066983_DEL [dm3] X_9172950_DEL [dm6]	ACACA	A	1.517e^-4	0.89	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9557437	X_9557437_INS [dm3] X_9663404_INS [dm6]	C	CTGC	1.518e^-4	0.89	UPSTREAM CG3106 INTERGENIC
2L	15155034	2L_15155034_SNP [dm3] 2L_15155034_SNP [dm6]	G	A	1.523e^-4	0.89	INTERGENIC
3R	14483642	3R_14483642_SNP [dm3] 3R_18657920_SNP [dm6]	G	T	1.524e^-4	0.89	INTRON CG31224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	246001	2L_246001_SNP [dm3] 2L_246001_SNP [dm6]	T	C	1.534e^-4	0.89	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	15755941	2L_15755941_SNP [dm3] 2L_15755941_SNP [dm6]	T	G	1.547e^-4	0.89	DOWNSTREAM Gli & 1 other INTERGENIC
2R	2482903	2R_2482903_SNP [dm3] 2R_6595398_SNP [dm6]	G	A	1.559e^-4	0.89	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5433604	2L_5433604_SNP [dm3] 2L_5433604_SNP [dm6]	T	A	1.560e^-4	0.89	DOWNSTREAM CR43713 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	16425911	2R_16425911_SNP [dm3] 2R_20538406_SNP [dm6]	A	C	1.561e^-4	0.89	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11424262	X_11424262_SNP [dm3] X_11530229_SNP [dm6]	C	G	1.570e^-4	0.89	INTRON Drak
2R	5282047	2R_5282047_SNP [dm3] 2R_9394542_SNP [dm6]	T	C	1.594e^-4	0.89	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20962269	X_20962269_SNP [dm3] X_21091242_SNP [dm6]	A	T	1.603e^-4	0.89	INTERGENIC
2L	244368	2L_244368_SNP [dm3] 2L_244368_SNP [dm6]	T	A	1.603e^-4	0.89	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7749470	2L_7749470_SNP [dm3] 2L_7749470_SNP [dm6]	T	C	1.614e^-4	0.89	INTERGENIC
3R	15584465	3R_15584465_SNP [dm3] 3R_19758743_SNP [dm6]	C	G	1.620e^-4	0.89	INTRON GluClalpha
3R	24290961	3R_24290961_DEL [dm3] 3R_28465239_DEL [dm6]	GACTGGCTCAGTACTTTGAA...	G	1.621e^-4	0.89	INTRON beat-VI
3R	3634637	3R_3634637_SNP [dm3] 3R_7808915_SNP [dm6]	C	G	1.624e^-4	0.89	INTRON CG2993	insulator Insulator_Class_II.mE01
X	12732414	X_12732414_SNP [dm3] X_12838381_SNP [dm6]	T	C	1.624e^-4	0.89	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7220062	3R_7220062_SNP [dm3] 3R_11394340_SNP [dm6]	T	C	1.624e^-4	0.89	UTR_3_PRIME pros
2L	15468959	2L_15468959_SNP [dm3] 2L_15468959_SNP [dm6]	T	C	1.625e^-4	0.89	EXON CR45353
2R	9444726	2R_9444726_SNP [dm3] 2R_13557221_SNP [dm6]	C	A	1.629e^-4	0.89	UTR_3_PRIME link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7301740	2R_7301740_SNP [dm3] 2R_11414235_SNP [dm6]	A	G	1.630e^-4	0.89	UPSTREAM CG7763 INTRON Drip
3L	7954346	3L_7954346_SNP [dm3] 3L_7961246_SNP [dm6]	C	T	1.635e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20242636	X_20242636_SNP [dm3] X_20371609_SNP [dm6]	T	G	1.637e^-4	0.89	INTERGENIC
X	11256083	X_11256083_SNP [dm3] X_11362050_SNP [dm6]	C	A	1.645e^-4	0.89	INTRON hop	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10388893	3L_10388893_SNP [dm3] 3L_10395793_SNP [dm6]	G	A	1.655e^-4	0.89	INTERGENIC
2L	18644622	2L_18644622_SNP [dm3] 2L_18644622_SNP [dm6]	A	G	1.671e^-4	0.89	INTRON MESR3
3L	15835415	3L_15835415_SNP [dm3] 3L_15842315_SNP [dm6]	A	G	1.675e^-4	0.89	INTRON CG32150
3L	6896716	3L_6896716_SNP [dm3] 3L_6903616_SNP [dm6]	C	T	1.679e^-4	0.89	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16276403	3R_16276403_SNP [dm3] 3R_20450681_SNP [dm6]	G	A	1.699e^-4	0.89	UPSTREAM Gfrl INTRON Gfrl
3L	9495395	3L_9495395_SNP [dm3] 3L_9502295_SNP [dm6]	C	A	1.699e^-4	0.89	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	5096872	2R_5096872_SNP [dm3] 2R_9209367_SNP [dm6]	C	T	1.714e^-4	0.89	UTR_3_PRIME VhaAC45
2L	19019080	2L_19019080_SNP [dm3] 2L_19019080_SNP [dm6]	C	T	1.715e^-4	0.89	DOWNSTREAM CR44184 INTERGENIC
3R	21490729	3R_21490729_INS [dm3] 3R_25665007_INS [dm6]	T	TTT	1.720e^-4	0.89	UTR_3_PRIME RASSF8 UPSTREAM Lgr3
X	9497305	X_9497305_SNP [dm3] X_9603272_SNP [dm6]	G	A	1.722e^-4	0.89	NON_SYNONYMOUS_CODING Gga DOWNSTREAM Lst8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15065676	3R_15065676_SNP [dm3] 3R_19239954_SNP [dm6]	A	C	1.733e^-4	0.89	INTRON unc79
3R	6013781	3R_6013781_SNP [dm3] 3R_10188059_SNP [dm6]	T	G	1.735e^-4	0.89	UTR_5_PRIME CG12814
2L	14066582	2L_14066582_SNP [dm3] 2L_14066582_SNP [dm6]	G	A	1.737e^-4	0.89	INTRON nAChRalpha5
3R	9886120	3R_9886120_SNP [dm3] 3R_14060398_SNP [dm6]	C	T	1.740e^-4	0.89	INTRON foxo	TF binding site mE1_TFBS_cad
2R	7945703	2R_7945703_SNP [dm3] 2R_12058198_SNP [dm6]	T	C	1.749e^-4	0.89	INTRON Drep-3
2L	21000930	2L_21000930_SNP [dm3] 2L_21000930_SNP [dm6]	A	G	1.760e^-4	0.89	INTRON CG42238	TF binding site mE1_TFBS_HSA
X	20962349	X_20962349_INS [dm3] X_21091322_INS [dm6]	A	AA	1.766e^-4	0.89	INTERGENIC
3R	14329320	3R_14329320_SNP [dm3] 3R_18503598_SNP [dm6]	A	T	1.770e^-4	0.89	INTRON fru
X	20962206	X_20962206_SNP [dm3] X_21091179_SNP [dm6]	A	T	1.775e^-4	0.89	INTERGENIC
3R	15399792	3R_15399792_SNP [dm3] 3R_19574070_SNP [dm6]	T	A	1.790e^-4	0.89	INTRON Dys
3L	6895893	3L_6895893_SNP [dm3] 3L_6902793_SNP [dm6]	T	A	1.793e^-4	0.89	INTERGENIC
X	20962420	X_20962420_SNP [dm3] X_21091393_SNP [dm6]	A	G	1.795e^-4	0.89	INTERGENIC
2R	9444728	2R_9444728_SNP [dm3] 2R_13557223_SNP [dm6]	T	A	1.797e^-4	0.89	UTR_3_PRIME link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10388922	3L_10388922_SNP [dm3] 3L_10395822_SNP [dm6]	C	G	1.803e^-4	0.89	INTERGENIC
2L	234412	2L_234412_SNP [dm3] 2L_234412_SNP [dm6]	C	T	1.804e^-4	0.89	SYNONYMOUS_CODING kis DOWNSTREAM CG13693
3R	14484222	3R_14484222_SNP [dm3] 3R_18658500_SNP [dm6]	T	A	1.805e^-4	0.89	INTRON CG31224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20962544	X_20962544_SNP [dm3] X_21091517_SNP [dm6]	C	T	1.817e^-4	0.89	INTERGENIC
3L	13579115	3L_13579115_SNP [dm3] 3L_13586015_SNP [dm6]	G	A	1.821e^-4	0.89	INTRON bru-3
3L	1744013	3L_1744013_SNP [dm3] 3L_1744013_SNP [dm6]	G	A	1.827e^-4	0.89	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9543947	2R_9543947_SNP [dm3] 2R_13656442_SNP [dm6]	C	G	1.827e^-4	0.89	INTRON fas
2R	20388124	2R_20388124_DEL [dm3] 2R_24500601_DEL [dm6]	TTGATTT	A	1.839e^-4	0.89	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
2L	19216496	2L_19216496_SNP [dm3] 2L_19216496_SNP [dm6]	A	T	1.842e^-4	0.89	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt
X	21343233	X_21343233_INS [dm3] X_21472206_INS [dm6]	A	AGATACA	1.853e^-4	0.89	INTERGENIC
3L	14154571	3L_14154571_SNP [dm3] 3L_14161471_SNP [dm6]	T	C	1.856e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
2L	7749128	2L_7749128_SNP [dm3] 2L_7749128_SNP [dm6]	G	A	1.867e^-4	0.89	INTERGENIC
3L	15028552	3L_15028552_SNP [dm3] 3L_15035452_SNP [dm6]	T	C	1.869e^-4	0.89	INTRON Sytbeta
2R	7726883	2R_7726883_SNP [dm3] 2R_11839378_SNP [dm6]	T	A	1.869e^-4	0.89	START_GAINED Sobp UTR_5_PRIME Sobp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16127312	2R_16127312_SNP [dm3] 2R_20239807_SNP [dm6]	A	T	1.874e^-4	0.89	UPSTREAM Efhc1.2 & 1 other DOWNSTREAM CG11099 INTERGENIC
3L	8824670	3L_8824670_SNP [dm3] 3L_8831570_SNP [dm6]	C	G	1.881e^-4	0.89	INTRON dally
2L	11032296	2L_11032296_SNP [dm3] 2L_11032296_SNP [dm6]	A	G	1.897e^-4	0.89	INTRON Samuel
2L	18765025	2L_18765025_SNP [dm3] 2L_18765025_SNP [dm6]	T	C	1.901e^-4	0.89	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1522533	3L_1522533_SNP [dm3] 3L_1522533_SNP [dm6]	A	G	1.904e^-4	0.89	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
2R	16127120	2R_16127120_SNP [dm3] 2R_20239615_SNP [dm6]	G	A	1.911e^-4	0.89	UPSTREAM Efhc1.2 & 1 other DOWNSTREAM CG11099 INTERGENIC
2R	14392264	2R_14392264_SNP [dm3] 2R_18504759_SNP [dm6]	T	C	1.913e^-4	0.89	SYNONYMOUS_CODING GstE11	TF binding site mE1_TFBS_HSA
3L	15844627	3L_15844627_SNP [dm3] 3L_15851527_SNP [dm6]	A	G	1.930e^-4	0.89	UTR_3_PRIME pHCl
3L	18387012	3L_18387012_SNP [dm3] 3L_18393912_SNP [dm6]	A	C	1.945e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7945693	2R_7945693_SNP [dm3] 2R_12058188_SNP [dm6]	G	C	1.946e^-4	0.89	INTRON Drep-3
3L	773630	3L_773630_SNP [dm3] 3L_773630_SNP [dm6]	G	A	1.948e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16425900	2R_16425900_SNP [dm3] 2R_20538395_SNP [dm6]	A	T	1.952e^-4	0.89	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	6927635	3L_6927635_SNP [dm3] 3L_6934535_SNP [dm6]	T	C	1.955e^-4	0.89	SYNONYMOUS_CODING CG14820
2L	6111658	2L_6111658_SNP [dm3] 2L_6111658_SNP [dm6]	G	C	1.960e^-4	0.89	INTRON stai
3R	25013936	3R_25013936_SNP [dm3] 3R_29188214_SNP [dm6]	A	C	1.962e^-4	0.89	INTRON CG14509
X	20281604	X_20281604_SNP [dm3] X_20410577_SNP [dm6]	C	T	1.964e^-4	0.89	INTRON HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	244268	2L_244268_SNP [dm3] 2L_244268_SNP [dm6]	A	G	1.964e^-4	0.89	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22173032	3R_22173032_SNP [dm3] 3R_26347310_SNP [dm6]	A	T	1.972e^-4	0.89	INTRON CG33970
2L	11534204	2L_11534204_SNP [dm3] 2L_11534204_SNP [dm6]	C	T	1.983e^-4	0.89	DOWNSTREAM CG34162 EXON CR42743
X	20224179	X_20224179_DEL [dm3] X_20353152_DEL [dm6]	TGGCTG	T	1.995e^-4	0.89	INTERGENIC
3L	8828338	3L_8828338_SNP [dm3] 3L_8835238_SNP [dm6]	C	G	1.999e^-4	0.89	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7749279	2L_7749279_SNP [dm3] 2L_7749279_SNP [dm6]	A	C	2.005e^-4	0.89	INTERGENIC
X	9438296	X_9438296_SNP [dm3] X_9544263_SNP [dm6]	G	C	2.010e^-4	0.89	INTRON CG32700	TF binding site BDTNP1_TFBS_dl
3R	9555733	3R_9555733_SNP [dm3] 3R_13730011_SNP [dm6]	A	T	2.010e^-4	0.89	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10959591	3L_10959591_SNP [dm3] 3L_10966491_SNP [dm6]	G	A	2.011e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9025663	X_9025663_DEL [dm3] X_9131630_DEL [dm6]	ATTTCATTTGA...	A	2.025e^-4	0.89	INTRON fend	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_sens
3R	19813677	3R_19813677_SNP [dm3] 3R_23987955_SNP [dm6]	G	A	2.040e^-4	0.89	SYNONYMOUS_CODING CG5902 DOWNSTREAM CG13604	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16425928	2R_16425928_SNP [dm3] 2R_20538423_SNP [dm6]	A	T	2.044e^-4	0.89	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6442993	3L_6442993_SNP [dm3] 3L_6449893_SNP [dm6]	G	C	2.055e^-4	0.89	INTRON CG42747
3L	6971366	3L_6971366_SNP [dm3] 3L_6978266_SNP [dm6]	C	A	2.057e^-4	0.89	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3490363	2L_3490363_SNP [dm3] 2L_3490363_SNP [dm6]	T	G	2.062e^-4	0.89	INTRON CG15414
X	9438301	X_9438301_SNP [dm3] X_9544268_SNP [dm6]	C	T	2.064e^-4	0.89	INTRON CG32700	TF binding site BDTNP1_TFBS_dl
3L	3248794	3L_3248794_SNP [dm3] 3L_3248794_SNP [dm6]	T	A	2.067e^-4	0.89	NON_SYNONYMOUS_CODING CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17517167	2L_17517167_SNP [dm3] 2L_17517167_SNP [dm6]	T	A	2.075e^-4	0.89	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9488740	2L_9488740_SNP [dm3] 2L_9488740_SNP [dm6]	C	T	2.078e^-4	0.89	INTERGENIC
2L	10975539	2L_10975539_SNP [dm3] 2L_10975539_SNP [dm6]	A	T	2.081e^-4	0.89	UTR_3_PRIME l_2_06225 UPSTREAM abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl
3L	8821747	3L_8821747_SNP [dm3] 3L_8828647_SNP [dm6]	A	T	2.084e^-4	0.89	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	5491770	X_5491770_SNP [dm3] X_5597737_SNP [dm6]	G	A	2.088e^-4	0.89	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9510136	2L_9510136_SNP [dm3] 2L_9510136_SNP [dm6]	A	G	2.095e^-4	0.89	INTRON CG33298
3R	24077611	3R_24077611_SNP [dm3] 3R_28251889_SNP [dm6]	T	C	2.108e^-4	0.89	INTERGENIC
3L	2735922	3L_2735922_SNP [dm3] 3L_2735922_SNP [dm6]	A	G	2.110e^-4	0.89	INTRON Mrtf
2L	11818158	2L_11818158_SNP [dm3] 2L_11818158_SNP [dm6]	G	A	2.112e^-4	0.89	SYNONYMOUS_CODING Pde1c	TF binding site mE1_TFBS_cad
2R	7900380	2R_7900380_SNP [dm3] 2R_12012875_SNP [dm6]	T	A	2.114e^-4	0.89	INTRON otk	TF binding site mE1_TFBS_Kr
3L	8829440	3L_8829440_SNP [dm3] 3L_8836340_SNP [dm6]	C	T	2.116e^-4	0.89	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
2R	7875834	2R_7875834_SNP [dm3] 2R_11988329_SNP [dm6]	C	A	2.123e^-4	0.89	UPSTREAM CG8298 DOWNSTREAM CG34231 INTRON rho-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	16479578	2L_16479578_SNP [dm3] 2L_16479578_SNP [dm6]	A	T	2.130e^-4	0.89	INTRON dac
3L	8811148	3L_8811148_SNP [dm3] 3L_8818048_SNP [dm6]	T	A	2.133e^-4	0.89	INTERGENIC
3L	8812129	3L_8812129_SNP [dm3] 3L_8819029_SNP [dm6]	T	A	2.133e^-4	0.89	INTERGENIC
3R	2846173	3R_2846173_SNP [dm3] 3R_7020451_SNP [dm6]	C	A	2.137e^-4	0.89	INTERGENIC
2L	18532807	2L_18532807_SNP [dm3] 2L_18532807_SNP [dm6]	A	G	2.140e^-4	0.89	UTR_3_PRIME Pde11 DOWNSTREAM CG10211
2L	6763799	2L_6763799_SNP [dm3] 2L_6763799_SNP [dm6]	G	A	2.146e^-4	0.89	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15840991	3L_15840991_SNP [dm3] 3L_15847891_SNP [dm6]	A	T	2.148e^-4	0.89	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	18645244	2L_18645244_SNP [dm3] 2L_18645244_SNP [dm6]	G	C	2.148e^-4	0.89	INTRON MESR3
X	12116230	X_12116230_SNP [dm3] X_12222197_SNP [dm6]	G	A	2.152e^-4	0.89	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	12116231	X_12116231_SNP [dm3] X_12222198_SNP [dm6]	A	G	2.152e^-4	0.89	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	793440	2L_793440_SNP [dm3] 2L_793440_SNP [dm6]	C	T	2.162e^-4	0.89	INTERGENIC
2R	16425904	2R_16425904_SNP [dm3] 2R_20538399_SNP [dm6]	A	G	2.167e^-4	0.89	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	3334585	2L_3334585_SNP [dm3] 2L_3334585_SNP [dm6]	G	C	2.175e^-4	0.89	SYNONYMOUS_CODING CG15408 DOWNSTREAM E23	TF binding site mE1_TFBS_cad
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	2.177e^-4	0.89	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16667711	3R_16667711_SNP [dm3] 3R_20841989_SNP [dm6]	G	C	2.181e^-4	0.89	UPSTREAM CG15695 INTERGENIC
3R	7173185	3R_7173185_SNP [dm3] 3R_11347463_SNP [dm6]	C	T	2.181e^-4	0.89	SYNONYMOUS_CODING KP78b UTR_3_PRIME KP78a INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7841888	3L_7841888_SNP [dm3] 3L_7848788_SNP [dm6]	G	T	2.191e^-4	0.89	INTRON Pdp1	regulatory region REDfly_CRMs
3L	15840999	3L_15840999_SNP [dm3] 3L_15847899_SNP [dm6]	C	A	2.231e^-4	0.89	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	18177274	2L_18177274_DEL [dm3] 2L_18177274_DEL [dm6]	AA	T	2.233e^-4	0.89	INTRON CG42750
2L	243824	2L_243824_SNP [dm3] 2L_243824_SNP [dm6]	A	G	2.252e^-4	0.89	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	11382141	3R_11382141_SNP [dm3] 3R_15556419_SNP [dm6]	G	T	2.253e^-4	0.89	INTERGENIC
2L	242336	2L_242336_SNP [dm3] 2L_242336_SNP [dm6]	A	G	2.262e^-4	0.89	UTR_5_PRIME kis DOWNSTREAM mir-965
2L	243732	2L_243732_SNP [dm3] 2L_243732_SNP [dm6]	A	C	2.262e^-4	0.89	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	246173	2L_246173_SNP [dm3] 2L_246173_SNP [dm6]	G	A	2.262e^-4	0.89	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	11000103	3L_11000103_SNP [dm3] 3L_11007003_SNP [dm6]	C	G	2.265e^-4	0.89	INTRON klu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9496106	3L_9496106_SNP [dm3] 3L_9503006_SNP [dm6]	T	C	2.275e^-4	0.89	INTRON path	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7757628	3L_7757628_SNP [dm3] 3L_7764528_SNP [dm6]	C	T	2.277e^-4	0.89	SYNONYMOUS_CODING Clk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7869068	2R_7869068_SNP [dm3] 2R_11981563_SNP [dm6]	C	T	2.278e^-4	0.89	NON_SYNONYMOUS_CODING CG33145 UTR_3_PRIME CG33145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11251055	3R_11251055_SNP [dm3] 3R_15425333_SNP [dm6]	G	A	2.281e^-4	0.89	INTRON CG6118	TF binding site mE1_TFBS_cad
3R	11251062	3R_11251062_SNP [dm3] 3R_15425340_SNP [dm6]	G	T	2.281e^-4	0.89	INTRON CG6118	TF binding site mE1_TFBS_cad
3R	11251069	3R_11251069_SNP [dm3] 3R_15425347_SNP [dm6]	A	T	2.281e^-4	0.89	INTRON CG6118	TF binding site mE1_TFBS_cad
X	16661263	X_16661263_SNP [dm3] X_16767230_SNP [dm6]	T	C	2.285e^-4	0.89	INTRON if
2L	7305741	2L_7305741_SNP [dm3] 2L_7305741_SNP [dm6]	C	T	2.290e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6890808	3L_6890808_SNP [dm3] 3L_6897708_SNP [dm6]	T	C	2.292e^-4	0.89	INTERGENIC
3R	22173033	3R_22173033_SNP [dm3] 3R_26347311_SNP [dm6]	C	G	2.292e^-4	0.89	INTRON CG33970
2L	16597944	2L_16597944_SNP [dm3] 2L_16597944_SNP [dm6]	T	C	2.303e^-4	0.89	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18784304	2L_18784304_SNP [dm3] 2L_18784304_SNP [dm6]	C	G	2.303e^-4	0.89	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	3578024	3L_3578024_INS [dm3] 3L_3578024_INS [dm6]	G	AA	2.310e^-4	0.89	INTRON Eip63E
3L	7269963	3L_7269963_SNP [dm3] 3L_7276863_SNP [dm6]	G	T	2.312e^-4	0.89	INTRON unc-13-4A
2L	11533832	2L_11533832_SNP [dm3] 2L_11533832_SNP [dm6]	C	T	2.316e^-4	0.89	DOWNSTREAM CG34162 INTRON CR42743
2R	7865297	2R_7865297_SNP [dm3] 2R_11977792_SNP [dm6]	A	G	2.319e^-4	0.89	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290
2L	3333528	2L_3333528_SNP [dm3] 2L_3333528_SNP [dm6]	C	A	2.326e^-4	0.89	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
3L	8191167	3L_8191167_SNP [dm3] 3L_8198067_SNP [dm6]	T	G	2.328e^-4	0.89	UPSTREAM CG8005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9568122	2L_9568122_SNP [dm3] 2L_9568122_SNP [dm6]	A	T	2.329e^-4	0.89	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1516240	3L_1516240_SNP [dm3] 3L_1516240_SNP [dm6]	T	C	2.336e^-4	0.89	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	13987136	3L_13987136_DEL [dm3] 3L_13994036_DEL [dm6]	CTTCTAATAAAGA...	C	2.342e^-4	0.89	UPSTREAM 26-29-p & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12385074	2R_12385074_SNP [dm3] 2R_16497569_SNP [dm6]	C	T	2.351e^-4	0.89	NON_SYNONYMOUS_CODING CG7813	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5490900	2L_5490900_SNP [dm3] 2L_5490900_SNP [dm6]	A	G	2.352e^-4	0.89	INTERGENIC
X	22272956	X_22272956_SNP [dm3] X_22871120_SNP [dm6]	T	C	2.366e^-4	0.89	INTRON CG42346 EXON CR43656
2R	9424464	2R_9424464_SNP [dm3] 2R_13536959_SNP [dm6]	C	T	2.371e^-4	0.89	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
3L	15937017	3L_15937017_DEL [dm3] 3L_15943917_DEL [dm6]	ATTTCACA	A	2.372e^-4	0.89	INTRON Pka-C3
3L	1561380	3L_1561380_SNP [dm3] 3L_1561380_SNP [dm6]	C	T	2.376e^-4	0.89	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15552575	3R_15552575_SNP [dm3] 3R_19726853_SNP [dm6]	G	A	2.379e^-4	0.89	INTERGENIC
2R	19537860	2R_19537860_SNP [dm3] 2R_23650337_SNP [dm6]	T	A	2.388e^-4	0.89	INTRON retn	TF binding site BDTNP1_TFBS_twi
3L	18342079	3L_18342079_SNP [dm3] 3L_18348979_SNP [dm6]	T	A	2.403e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16756127	3L_16756127_SNP [dm3] 3L_16763027_SNP [dm6]	T	A	2.404e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13987150	3L_13987150_SNP [dm3] 3L_13994050_SNP [dm6]	A	G	2.404e^-4	0.89	UPSTREAM 26-29-p & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13987153	3L_13987153_SNP [dm3] 3L_13994053_SNP [dm6]	C	T	2.404e^-4	0.89	UPSTREAM 26-29-p & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10922052	X_10922052_SNP [dm3] X_11028019_SNP [dm6]	T	C	2.405e^-4	0.89	INTRON CG42339
2L	17115110	2L_17115110_SNP [dm3] 2L_17115110_SNP [dm6]	C	T	2.411e^-4	0.89	INTERGENIC
3R	10006252	3R_10006252_SNP [dm3] 3R_14180530_SNP [dm6]	C	T	2.414e^-4	0.89	INTRON Dop1R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13486570	X_13486570_SNP [dm3] X_13592537_SNP [dm6]	A	G	2.418e^-4	0.89	UTR_3_PRIME Tango13 DOWNSTREAM Tango13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11346306	2L_11346306_SNP [dm3] 2L_11346306_SNP [dm6]	G	T	2.418e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12895084	X_12895084_SNP [dm3] X_13001051_SNP [dm6]	G	T	2.419e^-4	0.89	INTRON rad
X	7775587	X_7775587_SNP [dm3] X_7881554_SNP [dm6]	T	G	2.437e^-4	0.89	SYNONYMOUS_CODING Ir7e DOWNSTREAM Ir7f
X	4085816	X_4085816_DEL [dm3] X_4191783_DEL [dm6]	AG	A	2.441e^-4	0.89	INTRON Fas2
2L	2674496	2L_2674496_SNP [dm3] 2L_2674496_SNP [dm6]	A	G	2.451e^-4	0.89	INTERGENIC
X	21495759	X_21495759_DEL [dm3] X_21624732_DEL [dm6]	ATTGGACA	A	2.460e^-4	0.89	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC
3R	25857088	3R_25857088_SNP [dm3] 3R_30031366_SNP [dm6]	A	T	2.461e^-4	0.89	UTR_3_PRIME Axn INTRON Axn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16289089	3L_16289089_SNP [dm3] 3L_16295989_SNP [dm6]	T	A	2.463e^-4	0.89	UPSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4234631	2L_4234631_SNP [dm3] 2L_4234631_SNP [dm6]	A	T	2.466e^-4	0.89	INTERGENIC
X	7265095	X_7265095_SNP [dm3] X_7371062_SNP [dm6]	C	T	2.473e^-4	0.89	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13592430	2L_13592430_DEL [dm3] 2L_13592430_DEL [dm6]	TT	T	2.475e^-4	0.89	INTRON kuz
X	15649703	X_15649703_SNP [dm3] X_15755670_SNP [dm6]	A	G	2.486e^-4	0.89	UPSTREAM CG8260 INTRON Graf
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	2.493e^-4	0.89	INTRON tn
2R	9281940	2R_9281940_SNP [dm3] 2R_13394435_SNP [dm6]	G	A	2.497e^-4	0.89	NON_SYNONYMOUS_CODING AttC DOWNSTREAM CG4744
3R	12781397	3R_12781397_SNP [dm3] 3R_16955675_SNP [dm6]	G	A	2.498e^-4	0.89	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	10330495	3L_10330495_SNP [dm3] 3L_10337395_SNP [dm6]	A	G	2.502e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8066066	3R_8066066_SNP [dm3] 3R_12240344_SNP [dm6]	C	T	2.506e^-4	0.89	EXON CR44036	TF binding site mE1_TFBS_cad
2R	16128872	2R_16128872_SNP [dm3] 2R_20241367_SNP [dm6]	A	T	2.511e^-4	0.89	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
3R	19534364	3R_19534364_SNP [dm3] 3R_23708642_SNP [dm6]	C	A	2.513e^-4	0.89	DOWNSTREAM CG31414 INTERGENIC
2R	6845382	2R_6845382_SNP [dm3] 2R_10957877_SNP [dm6]	C	T	2.514e^-4	0.89	INTERGENIC
2L	129999	2L_129999_DEL [dm3] 2L_129999_DEL [dm6]	TTAGATGT	T	2.518e^-4	0.89	UPSTREAM CG3164 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12929334	X_12929334_SNP [dm3] X_13035301_SNP [dm6]	G	A	2.525e^-4	0.89	INTRON rad
2R	14558709	2R_14558709_SNP [dm3] 2R_18671204_SNP [dm6]	A	T	2.526e^-4	0.89	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6895795	3L_6895795_SNP [dm3] 3L_6902695_SNP [dm6]	G	A	2.526e^-4	0.89	INTERGENIC
2L	11488070	2L_11488070_SNP [dm3] 2L_11488070_SNP [dm6]	T	A	2.544e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23681188	3R_23681188_SNP [dm3] 3R_27855466_SNP [dm6]	G	A	2.557e^-4	0.89	INTRON CG34353
X	8891433	X_8891433_INS [dm3] X_8997400_INS [dm6]	A	AGA	2.575e^-4	0.89	INTRON rdgA & 1 other
2R	17486612	2R_17486612_SNP [dm3] 2R_21599107_SNP [dm6]	A	C	2.576e^-4	0.89	INTERGENIC
3R	9122747	3R_9122747_SNP [dm3] 3R_13297025_SNP [dm6]	G	T	2.579e^-4	0.89	INTRON CG8773
2L	9499819	2L_9499819_SNP [dm3] 2L_9499819_SNP [dm6]	A	T	2.591e^-4	0.89	INTRON CG33298
3R	25003631	3R_25003631_SNP [dm3] 3R_29177909_SNP [dm6]	G	A	2.596e^-4	0.89	INTRON CG14509
3L	3141194	3L_3141194_SNP [dm3] 3L_3141194_SNP [dm6]	A	G	2.601e^-4	0.89	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	11534029	2L_11534029_SNP [dm3] 2L_11534029_SNP [dm6]	G	T	2.602e^-4	0.89	DOWNSTREAM CG34162 EXON CR42743
2L	17567821	2L_17567821_SNP [dm3] 2L_17567821_SNP [dm6]	T	C	2.602e^-4	0.89	INTERGENIC
3L	6927886	3L_6927886_SNP [dm3] 3L_6934786_SNP [dm6]	G	A	2.615e^-4	0.89	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
X	5249745	X_5249745_SNP [dm3] X_5355712_SNP [dm6]	G	C	2.620e^-4	0.89	INTRON SK
2R	19567011	2R_19567011_SNP [dm3] 2R_23679488_SNP [dm6]	G	A	2.621e^-4	0.89	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
3L	8958482	3L_8958482_SNP [dm3] 3L_8965382_SNP [dm6]	C	A	2.622e^-4	0.89	NON_SYNONYMOUS_CODING CG5653 UPSTREAM CG5660	TF binding site mE1_TFBS_chinmo
3L	13460657	3L_13460657_INS [dm3] 3L_13467557_INS [dm6]	G	GCTGCTGCTGCTG...	2.632e^-4	0.89	CODON_INSERTION CG10089 DOWNSTREAM CG10089	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22222219	2L_22222219_SNP [dm3] 2L_22222219_SNP [dm6]	G	A	2.632e^-4	0.89	INTERGENIC	transposable element FlyBase
3L	6072893	3L_6072893_SNP [dm3] 3L_6079793_SNP [dm6]	A	G	2.633e^-4	0.89	NON_SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5283063	2R_5283063_SNP [dm3] 2R_9395558_SNP [dm6]	G	A	2.634e^-4	0.89	SYNONYMOUS_CODING CG8800 DOWNSTREAM CG8801 & 1 other	TF binding site mE1_TFBS_cad
2R	14169063	2R_14169063_SNP [dm3] 2R_18281558_SNP [dm6]	A	T	2.635e^-4	0.89	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15653618	X_15653618_SNP [dm3] X_15759585_SNP [dm6]	T	A	2.638e^-4	0.89	INTRON Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4442531	3L_4442531_SNP [dm3] 3L_4442531_SNP [dm6]	T	C	2.642e^-4	0.89	INTERGENIC
3R	10413355	3R_10413355_SNP [dm3] 3R_14587633_SNP [dm6]	T	A	2.644e^-4	0.89	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15775897	3R_15775897_SNP [dm3] 3R_19950175_SNP [dm6]	T	G	2.655e^-4	0.89	INTRON Hs6st
3L	15840871	3L_15840871_SNP [dm3] 3L_15847771_SNP [dm6]	G	T	2.664e^-4	0.89	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	8191234	3L_8191234_SNP [dm3] 3L_8198134_SNP [dm6]	A	T	2.673e^-4	0.89	UPSTREAM CG8005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20240574	X_20240574_SNP [dm3] X_20369547_SNP [dm6]	A	T	2.675e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22637961	3L_22637961_SNP [dm3] 3L_22644861_SNP [dm6]	C	T	2.676e^-4	0.89	UPSTREAM CG33766 DOWNSTREAM CR45381 INTERGENIC
3R	14329209	3R_14329209_SNP [dm3] 3R_18503487_SNP [dm6]	G	A	2.679e^-4	0.89	INTRON fru
3R	15399499	3R_15399499_SNP [dm3] 3R_19573777_SNP [dm6]	G	A	2.685e^-4	0.89	INTRON Dys
2L	20990793	2L_20990793_SNP [dm3] 2L_20990793_SNP [dm6]	C	T	2.689e^-4	0.89	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13111364	2R_13111364_SNP [dm3] 2R_17223859_SNP [dm6]	A	G	2.696e^-4	0.89	INTRON mbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	833843	2L_833843_SNP [dm3] 2L_833843_SNP [dm6]	C	T	2.704e^-4	0.89	UTR_3_PRIME drongo DOWNSTREAM dock
3L	8577903	3L_8577903_SNP [dm3] 3L_8584803_SNP [dm6]	A	G	2.709e^-4	0.89	UPSTREAM CG43078 INTRON CG43078
2R	9101148	2R_9101148_SNP [dm3] 2R_13213643_SNP [dm6]	G	T	2.712e^-4	0.89	INTRON AQP
2L	1550177	2L_1550177_SNP [dm3] 2L_1550177_SNP [dm6]	T	G	2.719e^-4	0.89	INTERGENIC
2L	11533994	2L_11533994_SNP [dm3] 2L_11533994_SNP [dm6]	G	A	2.736e^-4	0.89	DOWNSTREAM CG34162 EXON CR42743
2L	7465829	2L_7465829_SNP [dm3] 2L_7465829_SNP [dm6]	C	A	2.738e^-4	0.89	UPSTREAM CG6055 INTERGENIC
2L	18644589	2L_18644589_INS [dm3] 2L_18644589_INS [dm6]	T	TTGAAAACAGATTTT...	2.744e^-4	0.89	INTRON MESR3
2R	11161916	2R_11161916_SNP [dm3] 2R_15274411_SNP [dm6]	A	T	2.749e^-4	0.89	INTRON Trpm
X	10922069	X_10922069_SNP [dm3] X_11028036_SNP [dm6]	A	G	2.752e^-4	0.89	INTRON CG42339
2L	11488069	2L_11488069_SNP [dm3] 2L_11488069_SNP [dm6]	G	A	2.761e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17978331	3R_17978331_SNP [dm3] 3R_22152609_SNP [dm6]	C	A	2.778e^-4	0.89	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	8967935	3L_8967935_SNP [dm3] 3L_8974835_SNP [dm6]	A	G	2.778e^-4	0.89	UPSTREAM Srp68 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	21089441	2L_21089441_SNP [dm3] 2L_21089441_SNP [dm6]	T	C	2.783e^-4	0.89	UPSTREAM CG9259 & 1 other INTRON CG9259
2R	9424458	2R_9424458_SNP [dm3] 2R_13536953_SNP [dm6]	A	T	2.796e^-4	0.89	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
X	5705517	X_5705517_SNP [dm3] X_5811484_SNP [dm6]	C	T	2.801e^-4	0.89	DOWNSTREAM CR45529 & 1 other INTERGENIC
X	20224178	X_20224178_SNP [dm3] X_20353151_SNP [dm6]	A	C	2.808e^-4	0.89	INTERGENIC
2L	16653040	2L_16653040_SNP [dm3] 2L_16653040_SNP [dm6]	G	A	2.810e^-4	0.89	INTRON CG42389
2R	18901814	2R_18901814_SNP [dm3] 2R_23014291_SNP [dm6]	C	T	2.812e^-4	0.89	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
2L	14365275	2L_14365275_SNP [dm3] 2L_14365275_SNP [dm6]	A	T	2.817e^-4	0.89	UTR_3_PRIME spel1 INTRON spel1	TF binding site mE1_TFBS_cad
X	13545695	X_13545695_SNP [dm3] X_13651662_SNP [dm6]	C	G	2.817e^-4	0.89	INTRON NFAT
2L	648690	2L_648690_SNP [dm3] 2L_648690_SNP [dm6]	G	A	2.828e^-4	0.89	SYNONYMOUS_CODING ds
3L	965316	3L_965316_SNP [dm3] 3L_965316_SNP [dm6]	T	G	2.834e^-4	0.89	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23712847	3R_23712847_INS [dm3] 3R_27887125_INS [dm6]	G	GATGATTTAAACAAATG...	2.842e^-4	0.89	INTRON CG34353
2L	18616572	2L_18616572_SNP [dm3] 2L_18616572_SNP [dm6]	C	T	2.845e^-4	0.89	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13604396	3L_13604396_SNP [dm3] 3L_13611296_SNP [dm6]	G	C	2.845e^-4	0.89	INTRON bru-3
2L	21786	2L_21786_SNP [dm3] 2L_21786_SNP [dm6]	G	A	2.851e^-4	0.89	UPSTREAM CR43609 & 1 other DOWNSTREAM Ir21a INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15550447	X_15550447_SNP [dm3] X_15656414_SNP [dm6]	G	A	2.856e^-4	0.89	INTERGENIC
3L	1726153	3L_1726153_SNP [dm3] 3L_1726153_SNP [dm6]	T	A	2.863e^-4	0.89	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1726305	3L_1726305_SNP [dm3] 3L_1726305_SNP [dm6]	T	C	2.863e^-4	0.89	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20039213	3R_20039213_SNP [dm3] 3R_24213491_SNP [dm6]	A	G	2.866e^-4	0.89	INTRON twin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	10333746	3L_10333746_SNP [dm3] 3L_10340646_SNP [dm6]	T	C	2.869e^-4	0.89	INTERGENIC
3R	18266959	3R_18266959_SNP [dm3] 3R_22441237_SNP [dm6]	G	T	2.873e^-4	0.89	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
X	12929333	X_12929333_SNP [dm3] X_13035300_SNP [dm6]	T	G	2.886e^-4	0.89	INTRON rad
2R	13239569	2R_13239569_SNP [dm3] 2R_17352064_SNP [dm6]	G	A	2.893e^-4	0.89	INTRON mbl
3L	18398897	3L_18398897_SNP [dm3] 3L_18405797_SNP [dm6]	C	A	2.895e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16132921	3R_16132921_SNP [dm3] 3R_20307199_SNP [dm6]	A	T	2.896e^-4	0.89	INTRON CG4362	TF binding site BDTNP1_TFBS_dl
3L	10814240	3L_10814240_SNP [dm3] 3L_10821140_SNP [dm6]	G	A	2.897e^-4	0.89	INTERGENIC
3R	13379634	3R_13379634_SNP [dm3] 3R_17553912_SNP [dm6]	C	T	2.906e^-4	0.89	INTERGENIC
3L	15632573	3L_15632573_SNP [dm3] 3L_15639473_SNP [dm6]	A	T	2.907e^-4	0.89	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	5353525	2R_5353525_SNP [dm3] 2R_9466020_SNP [dm6]	T	C	2.908e^-4	0.89	INTRON Camta
3R	7187050	3R_7187050_SNP [dm3] 3R_11361328_SNP [dm6]	C	T	2.910e^-4	0.89	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3791886	3L_3791886_SNP [dm3] 3L_3791886_SNP [dm6]	A	G	2.921e^-4	0.89	DOWNSTREAM CG32266 INTRON CG32264
2L	65152	2L_65152_SNP [dm3] 2L_65152_SNP [dm6]	G	A	2.926e^-4	0.89	UPSTREAM CR45339 INTRON Cda5
3L	10482432	3L_10482432_SNP [dm3] 3L_10489332_SNP [dm6]	G	A	2.931e^-4	0.89	INTRON A2bp1
X	12606703	X_12606703_SNP [dm3] X_12712670_SNP [dm6]	T	C	2.934e^-4	0.89	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_sens
2L	14502926	2L_14502926_DEL [dm3] 2L_14502926_DEL [dm6]	CTTAACGC	C	2.941e^-4	0.89	INTERGENIC
2R	7947662	2R_7947662_SNP [dm3] 2R_12060157_SNP [dm6]	T	G	2.941e^-4	0.89	INTRON Drep-3
3L	10046637	3L_10046637_SNP [dm3] 3L_10053537_SNP [dm6]	G	C	2.942e^-4	0.89	INTRON dpr6
3R	14321383	3R_14321383_SNP [dm3] 3R_18495661_SNP [dm6]	A	C	2.942e^-4	0.89	INTRON fru
2L	7128069	2L_7128069_SNP [dm3] 2L_7128069_SNP [dm6]	T	C	2.946e^-4	0.89	INTRON Pvf3
3L	10438791	3L_10438791_SNP [dm3] 3L_10445691_SNP [dm6]	C	G	2.948e^-4	0.89	INTERGENIC
3L	11852050	3L_11852050_SNP [dm3] 3L_11858950_SNP [dm6]	A	T	2.969e^-4	0.89	INTRON CG44837
3L	21847030	3L_21847030_SNP [dm3] 3L_21853930_SNP [dm6]	C	A	2.969e^-4	0.89	DOWNSTREAM tRNA:CR32449 INTRON mub
3L	3872260	3L_3872260_SNP [dm3] 3L_3872260_SNP [dm6]	T	C	2.982e^-4	0.89	INTERGENIC
2L	21383022	2L_21383022_SNP [dm3] 2L_21383022_SNP [dm6]	G	A	2.988e^-4	0.89	INTRON nrv3
3L	2885738	3L_2885738_SNP [dm3] 3L_2885738_SNP [dm6]	C	T	2.989e^-4	0.89	INTRON spz5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	7939799	X_7939799_SNP [dm3] X_8045766_SNP [dm6]	G	A	2.991e^-4	0.89	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8969388	3L_8969388_SNP [dm3] 3L_8976288_SNP [dm6]	G	T	2.997e^-4	0.89	SYNONYMOUS_CODING Srp68	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12929364	X_12929364_SNP [dm3] X_13035331_SNP [dm6]	A	T	2.997e^-4	0.89	INTRON rad
3R	13674389	3R_13674389_SNP [dm3] 3R_17848667_SNP [dm6]	T	C	3.000e^-4	0.89	INTRON tinc
X	12844663	X_12844663_DEL [dm3] X_12950630_DEL [dm6]	AA	A	3.002e^-4	0.89	UTR_3_PRIME hec DOWNSTREAM fne & 1 other
2L	21363843	2L_21363843_SNP [dm3] 2L_21363843_SNP [dm6]	A	G	3.005e^-4	0.89	NON_SYNONYMOUS_CODING dtr
2L	19051764	2L_19051764_SNP [dm3] 2L_19051764_SNP [dm6]	T	A	3.014e^-4	0.89	UPSTREAM Rpn3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	18134943	2L_18134943_SNP [dm3] 2L_18134943_SNP [dm6]	C	A	3.018e^-4	0.89	INTRON kel	TF binding site mE1_TFBS_cad
2L	12114209	2L_12114209_SNP [dm3] 2L_12114209_SNP [dm6]	G	T	3.021e^-4	0.89	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12832840	2L_12832840_DEL [dm3] 2L_12832840_DEL [dm6]	CC	C	3.022e^-4	0.89	INTERGENIC
X	2991771	X_2991771_SNP [dm3] X_3097738_SNP [dm6]	T	G	3.023e^-4	0.89	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19623256	X_19623256_DEL [dm3] X_19729223_DEL [dm6]	CTAT	C	3.024e^-4	0.89	UTR_3_PRIME CG12531
3R	14003348	3R_14003348_SNP [dm3] 3R_18177626_SNP [dm6]	A	C	3.025e^-4	0.89	DOWNSTREAM PP2A-B' INTRON PP2A-B'
3L	12306209	3L_12306209_SNP [dm3] 3L_12313109_SNP [dm6]	C	G	3.033e^-4	0.89	INTERGENIC
3R	18972073	3R_18972073_SNP [dm3] 3R_23146351_SNP [dm6]	A	G	3.035e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16273031	3R_16273031_SNP [dm3] 3R_20447309_SNP [dm6]	T	C	3.037e^-4	0.89	INTRON Gfrl
2L	9500298	2L_9500298_DEL [dm3] 2L_9500298_DEL [dm6]	AAT	A	3.047e^-4	0.89	INTRON CG33298
2L	1743808	2L_1743808_SNP [dm3] 2L_1743808_SNP [dm6]	C	G	3.055e^-4	0.89	INTRON CG17646
2L	10420303	2L_10420303_SNP [dm3] 2L_10420303_SNP [dm6]	T	C	3.060e^-4	0.89	SYNONYMOUS_CODING RfC3 DOWNSTREAM pie	TF binding site mE1_TFBS_ttk
2R	13566390	2R_13566390_SNP [dm3] 2R_17678885_SNP [dm6]	A	G	3.067e^-4	0.89	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6346982	3L_6346982_SNP [dm3] 3L_6353882_SNP [dm6]	A	C	3.074e^-4	0.89	INTERGENIC
3R	18972072	3R_18972072_SNP [dm3] 3R_23146350_SNP [dm6]	T	C	3.078e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16129350	2R_16129350_SNP [dm3] 2R_20241845_SNP [dm6]	G	A	3.081e^-4	0.89	SYNONYMOUS_CODING Efhc1.2 DOWNSTREAM CG11208	TF binding site mE1_TFBS_cad
3L	11575429	3L_11575429_SNP [dm3] 3L_11582329_SNP [dm6]	G	T	3.103e^-4	0.89	UPSTREAM CG33269 DOWNSTREAM CG32086 INTERGENIC
2R	19375019	2R_19375019_SNP [dm3] 2R_23487496_SNP [dm6]	T	G	3.110e^-4	0.89	INTRON CG43795
2R	13595221	2R_13595221_SNP [dm3] 2R_17707716_SNP [dm6]	T	C	3.122e^-4	0.89	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10043480	3L_10043480_SNP [dm3] 3L_10050380_SNP [dm6]	A	G	3.122e^-4	0.89	INTRON dpr6
2L	12849733	2L_12849733_SNP [dm3] 2L_12849733_SNP [dm6]	G	T	3.126e^-4	0.89	INTERGENIC
3L	9996896	3L_9996896_SNP [dm3] 3L_10003796_SNP [dm6]	A	G	3.128e^-4	0.89	UTR_5_PRIME dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18383721	X_18383721_SNP [dm3] X_18489688_SNP [dm6]	G	C	3.130e^-4	0.89	UPSTREAM CG15046 INTERGENIC
X	19203980	X_19203980_SNP [dm3] X_19309947_SNP [dm6]	G	A	3.131e^-4	0.89	DOWNSTREAM out INTERGENIC
3R	15540269	3R_15540269_SNP [dm3] 3R_19714547_SNP [dm6]	G	A	3.135e^-4	0.89	DOWNSTREAM CG34286 INTERGENIC
3R	15540271	3R_15540271_SNP [dm3] 3R_19714549_SNP [dm6]	G	A	3.135e^-4	0.89	DOWNSTREAM CG34286 INTERGENIC
2L	5926471	2L_5926471_SNP [dm3] 2L_5926471_SNP [dm6]	A	G	3.139e^-4	0.89	UPSTREAM CR43926 INTRON dsf
3L	15873078	3L_15873078_SNP [dm3] 3L_15879978_SNP [dm6]	T	C	3.142e^-4	0.89	INTRON pHCl
2L	12315731	2L_12315731_SNP [dm3] 2L_12315731_SNP [dm6]	G	A	3.144e^-4	0.89	DOWNSTREAM CR45282 & 1 other INTERGENIC
2R	2756388	2R_2756388_SNP [dm3] 2R_6868883_SNP [dm6]	C	T	3.150e^-4	0.89	INTRON coro
2R	19519283	2R_19519283_SNP [dm3] 2R_23631760_SNP [dm6]	C	A	3.155e^-4	0.89	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13466702	3L_13466702_SNP [dm3] 3L_13473602_SNP [dm6]	T	G	3.155e^-4	0.89	INTRON CG10089
3L	6927842	3L_6927842_DEL [dm3] 3L_6934742_DEL [dm6]	TG	T	3.163e^-4	0.89	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
2R	15184505	2R_15184505_SNP [dm3] 2R_19297000_SNP [dm6]	C	T	3.164e^-4	0.89	INTRON Tab2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8614197	3L_8614197_SNP [dm3] 3L_8621097_SNP [dm6]	C	T	3.169e^-4	0.89	SYNONYMOUS_CODING S-Lap2 DOWNSTREAM GAPsec	TF binding site mE1_TFBS_sens
3R	13552215	3R_13552215_SNP [dm3] 3R_17726493_SNP [dm6]	A	T	3.173e^-4	0.89	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8815468	X_8815468_SNP [dm3] X_8921435_SNP [dm6]	T	G	3.178e^-4	0.89	UPSTREAM CR44111 INTRON rdgA
X	14805125	X_14805125_SNP [dm3] X_14911092_SNP [dm6]	A	T	3.181e^-4	0.89	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2L	3688386	2L_3688386_SNP [dm3] 2L_3688386_SNP [dm6]	G	A	3.200e^-4	0.89	INTRON CG34340
X	13704966	X_13704966_SNP [dm3] X_13810933_SNP [dm6]	G	C	3.204e^-4	0.89	SYNONYMOUS_CODING inaE UTR_3_PRIME inaE UPSTREAM CG11095	TF binding site mE1_TFBS_chinmo
3R	10222468	3R_10222468_SNP [dm3] 3R_14396746_SNP [dm6]	G	A	3.209e^-4	0.89	UPSTREAM mir-2281 INTRON cv-c
3L	9026188	3L_9026188_SNP [dm3] 3L_9033088_SNP [dm6]	A	T	3.210e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	10860952	2L_10860952_DEL [dm3] 2L_10860952_DEL [dm6]	ATAA	A	3.220e^-4	0.89	INTRON Stam	TF binding site mE1_TFBS_cad
X	14864463	X_14864463_SNP [dm3] X_14970430_SNP [dm6]	G	C	3.223e^-4	0.89	INTRON eag
3L	8944165	3L_8944165_SNP [dm3] 3L_8951065_SNP [dm6]	G	A	3.228e^-4	0.89	INTRON orb2 & 1 other
2R	10287919	2R_10287919_SNP [dm3] 2R_14400414_SNP [dm6]	T	A	3.229e^-4	0.89	INTERGENIC
2L	3321267	2L_3321267_SNP [dm3] 2L_3321267_SNP [dm6]	C	T	3.236e^-4	0.89	INTRON CG8837	TF binding site mE1_TFBS_chinmo
X	18049231	X_18049231_SNP [dm3] X_18155198_SNP [dm6]	T	C	3.239e^-4	0.89	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15016906	3R_15016906_SNP [dm3] 3R_19191184_SNP [dm6]	C	T	3.244e^-4	0.89	INTRON CG31475
3L	15841042	3L_15841042_SNP [dm3] 3L_15847942_SNP [dm6]	A	G	3.249e^-4	0.89	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	6031230	2R_6031230_SNP [dm3] 2R_10143725_SNP [dm6]	C	T	3.250e^-4	0.89	SPLICE_SITE_REGION CG18011 INTRON CG18011
3L	3804992	3L_3804992_SNP [dm3] 3L_3804992_SNP [dm6]	A	T	3.265e^-4	0.89	INTRON CG32264 & 1 other
3R	15016819	3R_15016819_DEL [dm3] 3R_19191097_DEL [dm6]	TTATGCATGT	T	3.289e^-4	0.89	INTRON CG31475
3R	7221690	3R_7221690_SNP [dm3] 3R_11395968_SNP [dm6]	A	G	3.289e^-4	0.89	UTR_3_PRIME pros DOWNSTREAM pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20962205	X_20962205_SNP [dm3] X_21091178_SNP [dm6]	G	A	3.299e^-4	0.89	INTERGENIC
2L	14066872	2L_14066872_SNP [dm3] 2L_14066872_SNP [dm6]	C	T	3.304e^-4	0.89	INTRON nAChRalpha5
X	16103508	X_16103508_SNP [dm3] X_16209475_SNP [dm6]	G	A	3.310e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	6884568	2R_6884568_SNP [dm3] 2R_10997063_SNP [dm6]	A	G	3.312e^-4	0.89	INTRON luna
3R	15016801	3R_15016801_SNP [dm3] 3R_19191079_SNP [dm6]	A	C	3.313e^-4	0.89	INTRON CG31475
3R	15016805	3R_15016805_SNP [dm3] 3R_19191083_SNP [dm6]	T	C	3.313e^-4	0.89	INTRON CG31475
3R	15016814	3R_15016814_SNP [dm3] 3R_19191092_SNP [dm6]	G	C	3.313e^-4	0.89	INTRON CG31475
3L	13005675	3L_13005675_SNP [dm3] 3L_13012575_SNP [dm6]	T	G	3.313e^-4	0.89	SYNONYMOUS_CODING MICAL-like UPSTREAM CG11261	TF binding site mE1_TFBS_sens
3L	10806111	3L_10806111_SNP [dm3] 3L_10813011_SNP [dm6]	A	T	3.320e^-4	0.89	INTERGENIC
X	10452533	X_10452533_SNP [dm3] X_10558500_SNP [dm6]	A	T	3.327e^-4	0.89	INTRON spri
3R	16276400	3R_16276400_SNP [dm3] 3R_20450678_SNP [dm6]	T	A	3.353e^-4	0.89	UPSTREAM Gfrl INTRON Gfrl
2L	17163152	2L_17163152_SNP [dm3] 2L_17163152_SNP [dm6]	C	G	3.357e^-4	0.89	INTRON beat-IIIa & 1 other
2L	16069101	2L_16069101_SNP [dm3] 2L_16069101_SNP [dm6]	C	G	3.359e^-4	0.89	INTRON beat-Ia
3L	3104390	3L_3104390_SNP [dm3] 3L_3104390_SNP [dm6]	T	G	3.362e^-4	0.89	INTRON Cht7
X	2991156	X_2991156_SNP [dm3] X_3097123_SNP [dm6]	G	A	3.363e^-4	0.89	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22774589	3R_22774589_SNP [dm3] 3R_26948867_SNP [dm6]	A	T	3.370e^-4	0.89	DOWNSTREAM CG6330 INTRON CG18472
2R	5282592	2R_5282592_SNP [dm3] 2R_9395087_SNP [dm6]	G	C	3.373e^-4	0.89	NON_SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
3L	2432308	3L_2432308_SNP [dm3] 3L_2432308_SNP [dm6]	A	C	3.376e^-4	0.89	INTRON CG45186
X	10110203	X_10110203_SNP [dm3] X_10216170_SNP [dm6]	T	G	3.378e^-4	0.89	UTR_3_PRIME l_1_G0230 INTRON CG2962	TF binding site BDTNP1_TFBS_sna
2R	19190754	2R_19190754_SNP [dm3] 2R_23303231_SNP [dm6]	C	T	3.380e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14155442	3L_14155442_SNP [dm3] 3L_14162342_SNP [dm6]	G	T	3.390e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10553066	3R_10553066_SNP [dm3] 3R_14727344_SNP [dm6]	A	G	3.395e^-4	0.89	INTRON CG7530
2L	22223934	2L_22223934_SNP [dm3] 2L_22223934_SNP [dm6]	G	T	3.395e^-4	0.89	INTERGENIC	transposable element FlyBase
3L	2273459	3L_2273459_SNP [dm3] 3L_2273459_SNP [dm6]	A	C	3.398e^-4	0.89	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
2R	12156661	2R_12156661_SNP [dm3] 2R_16269156_SNP [dm6]	C	A	3.405e^-4	0.89	SYNONYMOUS_CODING Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21498770	X_21498770_SNP [dm3] X_21627743_SNP [dm6]	T	G	3.406e^-4	0.89	INTRON DIP1	transposable element FlyBase
2R	14367088	2R_14367088_SNP [dm3] 2R_18479583_SNP [dm6]	A	T	3.410e^-4	0.89	INTRON CG30116
3L	7741180	3L_7741180_SNP [dm3] 3L_7748080_SNP [dm6]	A	G	3.410e^-4	0.89	NON_SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11543165	3R_11543165_SNP [dm3] 3R_15717443_SNP [dm6]	A	G	3.416e^-4	0.89	UPSTREAM CG31294 INTERGENIC
3R	14329210	3R_14329210_SNP [dm3] 3R_18503488_SNP [dm6]	T	C	3.418e^-4	0.89	INTRON fru
3R	2609166	3R_2609166_DEL [dm3] 3R_6783444_DEL [dm6]	CCTGTTTTAAC...	C	3.424e^-4	0.89	INTERGENIC
2L	5485995	2L_5485995_SNP [dm3] 2L_5485995_SNP [dm6]	C	A	3.432e^-4	0.89	UPSTREAM CR45287 INTERGENIC
3L	9036596	3L_9036596_SNP [dm3] 3L_9043496_SNP [dm6]	C	T	3.432e^-4	0.89	SYNONYMOUS_CODING Doc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19611683	2R_19611683_SNP [dm3] 2R_23724160_SNP [dm6]	C	G	3.436e^-4	0.89	INTRON Sesn
2L	42744	2L_42744_DEL [dm3] 2L_42744_DEL [dm6]	ACCGCTTCTAA...	A	3.441e^-4	0.89	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20926879	3R_20926879_SNP [dm3] 3R_25101157_SNP [dm6]	C	A	3.450e^-4	0.89	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096	TF binding site mE1_TFBS_sens
3L	1726685	3L_1726685_SNP [dm3] 3L_1726685_SNP [dm6]	T	C	3.460e^-4	0.89	INTRON drpr
2L	9686502	2L_9686502_INS [dm3] 2L_9686502_INS [dm6]	A	ACCGCCAGCCTTAA...	3.461e^-4	0.89	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3959606	3R_3959606_SNP [dm3] 3R_8133884_SNP [dm6]	T	C	3.470e^-4	0.89	INTERGENIC
2R	13566386	2R_13566386_SNP [dm3] 2R_17678881_SNP [dm6]	G	T	3.470e^-4	0.89	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18870146	X_18870146_SNP [dm3] X_18976113_SNP [dm6]	G	C	3.483e^-4	0.89	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9880380	3R_9880380_SNP [dm3] 3R_14054658_SNP [dm6]	A	C	3.489e^-4	0.89	INTERGENIC
2R	9787635	2R_9787635_SNP [dm3] 2R_13900130_SNP [dm6]	G	A	3.493e^-4	0.89	INTRON shot
3L	2957059	3L_2957059_SNP [dm3] 3L_2957059_SNP [dm6]	C	A	3.507e^-4	0.89	INTRON Shab
3L	6072346	3L_6072346_SNP [dm3] 3L_6079246_SNP [dm6]	A	C	3.507e^-4	0.89	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
2L	15041346	2L_15041346_SNP [dm3] 2L_15041346_SNP [dm6]	C	T	3.508e^-4	0.89	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10576183	3L_10576183_INS [dm3] 3L_10583083_INS [dm6]	T	TA	3.516e^-4	0.89	INTRON A2bp1
X	5539114	X_5539114_SNP [dm3] X_5645081_SNP [dm6]	A	T	3.517e^-4	0.89	INTRON CG42492
2L	14394125	2L_14394125_SNP [dm3] 2L_14394125_SNP [dm6]	G	A	3.517e^-4	0.89	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3818562	3L_3818562_SNP [dm3] 3L_3818562_SNP [dm6]	G	T	3.518e^-4	0.89	UPSTREAM enc DOWNSTREAM Scsalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15767477	3L_15767477_SNP [dm3] 3L_15774377_SNP [dm6]	T	C	3.523e^-4	0.89	INTERGENIC
2L	3589094	2L_3589094_SNP [dm3] 2L_3589094_SNP [dm6]	T	C	3.523e^-4	0.89	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	9491520	3R_9491520_SNP [dm3] 3R_13665798_SNP [dm6]	T	A	3.524e^-4	0.89	NON_SYNONYMOUS_CODING B52 UTR_3_PRIME B52
2R	9543946	2R_9543946_SNP [dm3] 2R_13656441_SNP [dm6]	A	G	3.527e^-4	0.89	INTRON fas
2L	3376230	2L_3376230_SNP [dm3] 2L_3376230_SNP [dm6]	C	G	3.541e^-4	0.89	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	24825380	3R_24825380_SNP [dm3] 3R_28999658_SNP [dm6]	T	G	3.544e^-4	0.89	INTRON wat
2R	4184611	2R_4184611_SNP [dm3] 2R_8297106_SNP [dm6]	C	T	3.549e^-4	0.89	UPSTREAM mir-280 INTERGENIC
2L	8443130	2L_8443130_SNP [dm3] 2L_8443130_SNP [dm6]	T	C	3.564e^-4	0.89	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
X	19080782	X_19080782_SNP [dm3] X_19186749_SNP [dm6]	A	G	3.597e^-4	0.89	SYNONYMOUS_CODING CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16559966	3L_16559966_SNP [dm3] 3L_16566866_SNP [dm6]	A	C	3.599e^-4	0.89	NON_SYNONYMOUS_CODING CG43206 INTRON Mipp1
2L	12086641	2L_12086641_SNP [dm3] 2L_12086641_SNP [dm6]	T	G	3.600e^-4	0.89	UPSTREAM prd DOWNSTREAM CR44592 EXON CR44593	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12086657	2L_12086657_SNP [dm3] 2L_12086657_SNP [dm6]	T	A	3.600e^-4	0.89	UPSTREAM prd DOWNSTREAM CR44592 EXON CR44593	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9572815	2L_9572815_SNP [dm3] 2L_9572815_SNP [dm6]	A	G	3.601e^-4	0.89	SYNONYMOUS_CODING CG3838 DOWNSTREAM Mtpalpha
2R	13304982	2R_13304982_SNP [dm3] 2R_17417477_SNP [dm6]	T	C	3.608e^-4	0.89	SYNONYMOUS_CODING cnk
X	18764309	X_18764309_SNP [dm3] X_18870276_SNP [dm6]	G	T	3.635e^-4	0.89	INTRON CG34401	TF binding site mE1_TFBS_HSA
3R	24420280	3R_24420280_SNP [dm3] 3R_28594558_SNP [dm6]	G	T	3.638e^-4	0.89	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	19673652	3R_19673652_SNP [dm3] 3R_23847930_SNP [dm6]	C	T	3.640e^-4	0.89	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6031211	2R_6031211_SNP [dm3] 2R_10143706_SNP [dm6]	A	T	3.644e^-4	0.89	INTRON CG18011
2R	9448282	2R_9448282_SNP [dm3] 2R_13560777_SNP [dm6]	A	T	3.656e^-4	0.89	DOWNSTREAM CG13334 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	20259202	X_20259202_SNP [dm3] X_20388175_SNP [dm6]	A	G	3.658e^-4	0.89	INTERGENIC
2L	9510143	2L_9510143_SNP [dm3] 2L_9510143_SNP [dm6]	G	A	3.660e^-4	0.89	INTRON CG33298
3L	18421134	3L_18421134_SNP [dm3] 3L_18428034_SNP [dm6]	C	G	3.681e^-4	0.89	INTERGENIC
3L	6072410	3L_6072410_SNP [dm3] 3L_6079310_SNP [dm6]	A	G	3.690e^-4	0.89	INTRON CG6619	TF binding site mE1_TFBS_cad
2L	13572531	2L_13572531_SNP [dm3] 2L_13572531_SNP [dm6]	G	A	3.698e^-4	0.89	INTRON kuz
3L	968804	3L_968804_SNP [dm3] 3L_968804_SNP [dm6]	C	G	3.701e^-4	0.89	INTRON Glut1
X	11043498	X_11043498_SNP [dm3] X_11149465_SNP [dm6]	C	T	3.708e^-4	0.89	UTR_5_PRIME Lint-1 UPSTREAM Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16842596	2R_16842596_SNP [dm3] 2R_20955091_SNP [dm6]	G	A	3.714e^-4	0.89	SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8802216	3L_8802216_SNP [dm3] 3L_8809116_SNP [dm6]	T	C	3.720e^-4	0.89	DOWNSTREAM CG32024 INTRON CG13308
3L	8818291	3L_8818291_SNP [dm3] 3L_8825191_SNP [dm6]	G	T	3.721e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14139738	2R_14139738_SNP [dm3] 2R_18252233_SNP [dm6]	G	T	3.725e^-4	0.89	INTERGENIC
X	21337342	X_21337342_SNP [dm3] X_21466315_SNP [dm6]	A	T	3.739e^-4	0.89	DOWNSTREAM CR45507 INTERGENIC
3L	18372790	3L_18372790_SNP [dm3] 3L_18379690_SNP [dm6]	T	A	3.739e^-4	0.89	INTERGENIC
2L	1979104	2L_1979104_SNP [dm3] 2L_1979104_SNP [dm6]	A	G	3.740e^-4	0.89	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15952629	2L_15952629_SNP [dm3] 2L_15952629_SNP [dm6]	C	T	3.749e^-4	0.89	INTRON beat-Ib
2L	3588858	2L_3588858_SNP [dm3] 2L_3588858_SNP [dm6]	G	T	3.754e^-4	0.89	EXON CR43823	TF binding site mE1_TFBS_HSA
2L	7755434	2L_7755434_SNP [dm3] 2L_7755434_SNP [dm6]	T	C	3.761e^-4	0.89	UPSTREAM CG14538 INTRON CG7196
3L	17375052	3L_17375052_SNP [dm3] 3L_17381952_SNP [dm6]	A	C	3.768e^-4	0.89	SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11300305	2L_11300305_SNP [dm3] 2L_11300305_SNP [dm6]	T	A	3.773e^-4	0.89	INTERGENIC
2L	10632806	2L_10632806_SNP [dm3] 2L_10632806_SNP [dm6]	T	G	3.774e^-4	0.89	INTRON CG7329	TF binding site mE1_TFBS_inv
3R	18972147	3R_18972147_SNP [dm3] 3R_23146425_SNP [dm6]	A	G	3.791e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13623998	2R_13623998_SNP [dm3] 2R_17736493_SNP [dm6]	G	A	3.793e^-4	0.89	SYNONYMOUS_CODING CG6406	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11043543	X_11043543_SNP [dm3] X_11149510_SNP [dm6]	C	T	3.799e^-4	0.89	START_GAINED Lint-1 UTR_5_PRIME Lint-1 UPSTREAM Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12688628	3L_12688628_SNP [dm3] 3L_12695528_SNP [dm6]	C	T	3.801e^-4	0.89	INTRON mirr	TF binding site BDTNP1_TFBS_dl
3R	17839172	3R_17839172_DEL [dm3] 3R_22013450_DEL [dm6]	TT	T	3.814e^-4	0.89	UTR_3_PRIME Eip93F
2R	19533816	2R_19533816_SNP [dm3] 2R_23646293_SNP [dm6]	T	C	3.816e^-4	0.89	UTR_5_PRIME retn INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11149317	2R_11149317_SNP [dm3] 2R_15261812_SNP [dm6]	A	G	3.826e^-4	0.89	NON_SYNONYMOUS_CODING ItgalphaPS4 DOWNSTREAM Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16567755	2L_16567755_SNP [dm3] 2L_16567755_SNP [dm6]	C	A	3.828e^-4	0.89	INTRON CG42389
2L	3321336	2L_3321336_INS [dm3] 2L_3321336_INS [dm6]	T	TGTAT	3.841e^-4	0.89	INTRON CG8837	TF binding site mE1_TFBS_chinmo
2L	20966465	2L_20966465_DEL [dm3] 2L_20966465_DEL [dm6]	AA	A	3.842e^-4	0.89	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3R	15402566	3R_15402566_SNP [dm3] 3R_19576844_SNP [dm6]	T	C	3.850e^-4	0.89	INTRON Dys
3L	17528462	3L_17528462_SNP [dm3] 3L_17535362_SNP [dm6]	T	A	3.871e^-4	0.89	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19859441	3L_19859441_SNP [dm3] 3L_19866341_SNP [dm6]	T	A	3.873e^-4	0.89	INTERGENIC	transposable element FlyBase
2R	4853327	2R_4853327_SNP [dm3] 2R_8965822_SNP [dm6]	T	G	3.886e^-4	0.89	INTRON CG8216
3L	15834680	3L_15834680_SNP [dm3] 3L_15841580_SNP [dm6]	C	T	3.887e^-4	0.89	INTRON CG32150
2R	4583351	2R_4583351_SNP [dm3] 2R_8695846_SNP [dm6]	A	C	3.899e^-4	0.89	UPSTREAM CG8738 & 1 other INTRON CG8586
X	11660927	X_11660927_SNP [dm3] X_11766894_SNP [dm6]	C	T	3.917e^-4	0.89	SYNONYMOUS_CODING m
3R	16508345	3R_16508345_SNP [dm3] 3R_20682623_SNP [dm6]	A	G	3.922e^-4	0.89	INTERGENIC
2L	20793398	2L_20793398_SNP [dm3] 2L_20793398_SNP [dm6]	A	G	3.927e^-4	0.89	INTRON vari	TF binding site mE1_TFBS_Trl
X	21344489	X_21344489_SNP [dm3] X_21473462_SNP [dm6]	C	T	3.932e^-4	0.89	INTERGENIC
2L	12315782	2L_12315782_SNP [dm3] 2L_12315782_SNP [dm6]	T	C	3.936e^-4	0.89	DOWNSTREAM CR45283 EXON CR45282
2L	18616559	2L_18616559_SNP [dm3] 2L_18616559_SNP [dm6]	A	G	3.939e^-4	0.89	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9291651	2R_9291651_DEL [dm3] 2R_13404146_DEL [dm6]	AGTGATTAAACGCTA...	A	3.943e^-4	0.89	INTERGENIC
2L	4597178	2L_4597178_DEL [dm3] 2L_4597178_DEL [dm6]	CTAAGCAC	C	3.944e^-4	0.89	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2423839	3L_2423839_SNP [dm3] 3L_2423839_SNP [dm6]	T	C	3.947e^-4	0.89	INTRON CG45186
X	16660641	X_16660641_SNP [dm3] X_16766608_SNP [dm6]	T	G	3.951e^-4	0.89	INTRON if
X	20962195	X_20962195_SNP [dm3] X_21091168_SNP [dm6]	T	C	3.952e^-4	0.89	INTERGENIC
2R	7902064	2R_7902064_SNP [dm3] 2R_12014559_SNP [dm6]	T	G	3.961e^-4	0.89	UPSTREAM CR44306 INTRON otk
3L	3805064	3L_3805064_SNP [dm3] 3L_3805064_SNP [dm6]	T	G	3.967e^-4	0.89	INTRON CG32264 & 1 other
X	22295099	X_22295099_SNP [dm3] X_22893263_SNP [dm6]	C	T	3.968e^-4	0.89	INTERGENIC
2R	9436684	2R_9436684_SNP [dm3] 2R_13549179_SNP [dm6]	T	G	3.968e^-4	0.89	SYNONYMOUS_CODING CG33156
X	8937185	X_8937185_SNP [dm3] X_9043152_SNP [dm6]	A	T	3.979e^-4	0.89	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10271960	X_10271960_SNP [dm3] X_10377927_SNP [dm6]	T	C	3.989e^-4	0.89	SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22767370	3R_22767370_SNP [dm3] 3R_26941648_SNP [dm6]	A	G	3.991e^-4	0.89	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2R	9360668	2R_9360668_SNP [dm3] 2R_13473163_SNP [dm6]	A	C	3.991e^-4	0.89	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13239118	2R_13239118_SNP [dm3] 2R_17351613_SNP [dm6]	C	T	3.993e^-4	0.89	INTRON mbl
2L	14522480	2L_14522480_SNP [dm3] 2L_14522480_SNP [dm6]	A	T	3.997e^-4	0.89	INTERGENIC
X	2493078	X_2493078_SNP [dm3] X_2599045_SNP [dm6]	T	A	4.006e^-4	0.89	UTR_3_PRIME egh DOWNSTREAM Klp3A & 1 other
3L	968252	3L_968252_SNP [dm3] 3L_968252_SNP [dm6]	A	G	4.011e^-4	0.89	INTRON Glut1
3R	7203501	3R_7203501_SNP [dm3] 3R_11377779_SNP [dm6]	A	G	4.014e^-4	0.89	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6443140	3L_6443140_SNP [dm3] 3L_6450040_SNP [dm6]	C	G	4.025e^-4	0.89	INTRON CG42747
3R	14761862	3R_14761862_INS [dm3] 3R_18936140_INS [dm6]	T	TCT	4.032e^-4	0.89	INTRON CG42613
X	13248912	X_13248912_SNP [dm3] X_13354879_SNP [dm6]	T	A	4.039e^-4	0.89	INTERGENIC
3R	13263162	3R_13263162_SNP [dm3] 3R_17437440_SNP [dm6]	G	A	4.043e^-4	0.89	INTRON CG5873
2R	6027513	2R_6027513_SNP [dm3] 2R_10140008_SNP [dm6]	C	A	4.048e^-4	0.89	SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6027535	2R_6027535_SNP [dm3] 2R_10140030_SNP [dm6]	C	A	4.048e^-4	0.89	NON_SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6027564	2R_6027564_SNP [dm3] 2R_10140059_SNP [dm6]	G	C	4.048e^-4	0.89	SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467
2R	6031223	2R_6031223_SNP [dm3] 2R_10143718_SNP [dm6]	T	C	4.048e^-4	0.89	INTRON CG18011
3L	6900678	3L_6900678_SNP [dm3] 3L_6907578_SNP [dm6]	T	C	4.051e^-4	0.89	INTERGENIC
3L	16294838	3L_16294838_SNP [dm3] 3L_16301738_SNP [dm6]	C	A	4.055e^-4	0.89	SYNONYMOUS_CODING CG4982 DOWNSTREAM CG13044
3R	6005691	3R_6005691_SNP [dm3] 3R_10179969_SNP [dm6]	C	G	4.058e^-4	0.89	INTRON CG12814
3R	6005714	3R_6005714_SNP [dm3] 3R_10179992_SNP [dm6]	C	T	4.058e^-4	0.89	INTRON CG12814
X	12929723	X_12929723_SNP [dm3] X_13035690_SNP [dm6]	A	G	4.066e^-4	0.89	INTRON rad
2L	12832646	2L_12832646_SNP [dm3] 2L_12832646_SNP [dm6]	C	T	4.067e^-4	0.89	INTERGENIC
2R	2741373	2R_2741373_SNP [dm3] 2R_6853868_SNP [dm6]	T	G	4.069e^-4	0.89	INTERGENIC
3R	2771287	3R_2771287_SNP [dm3] 3R_6945565_SNP [dm6]	C	T	4.070e^-4	0.89	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17289935	3L_17289935_SNP [dm3] 3L_17296835_SNP [dm6]	C	G	4.071e^-4	0.89	INTERGENIC
X	20006135	X_20006135_SNP [dm3] X_20112102_SNP [dm6]	C	T	4.073e^-4	0.89	INTERGENIC
3L	10329267	3L_10329267_SNP [dm3] 3L_10336167_SNP [dm6]	T	C	4.081e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	6543346	3L_6543346_SNP [dm3] 3L_6550246_SNP [dm6]	A	C	4.082e^-4	0.89	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
X	21345876	X_21345876_SNP [dm3] X_21474849_SNP [dm6]	G	A	4.088e^-4	0.89	INTERGENIC
3R	8845994	3R_8845994_SNP [dm3] 3R_13020272_SNP [dm6]	T	G	4.090e^-4	0.89	INTRON CtBP
2L	18550223	2L_18550223_SNP [dm3] 2L_18550223_SNP [dm6]	T	A	4.097e^-4	0.89	INTRON Pde11
3R	22774606	3R_22774606_SNP [dm3] 3R_26948884_SNP [dm6]	T	A	4.120e^-4	0.89	DOWNSTREAM CG6330 INTRON CG18472
3R	5993886	3R_5993886_SNP [dm3] 3R_10168164_SNP [dm6]	T	C	4.134e^-4	0.89	INTRON Best1
3L	8191067	3L_8191067_INS [dm3] 3L_8197967_INS [dm6]	C	TTATTACCATTACT...	4.134e^-4	0.89	UTR_5_PRIME Ubc12 UPSTREAM CG8005 & 1 other	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1504329	3L_1504329_SNP [dm3] 3L_1504329_SNP [dm6]	A	G	4.143e^-4	0.89	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8821685	3L_8821685_SNP [dm3] 3L_8828585_SNP [dm6]	G	A	4.150e^-4	0.89	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	20240524	X_20240524_SNP [dm3] X_20369497_SNP [dm6]	T	A	4.170e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6200847	2L_6200847_SNP [dm3] 2L_6200847_SNP [dm6]	T	C	4.170e^-4	0.89	INTRON CG34380
X	7775083	X_7775083_SNP [dm3] X_7881050_SNP [dm6]	A	G	4.181e^-4	0.89	SYNONYMOUS_CODING Ir7e DOWNSTREAM Ir7f
3L	11326508	3L_11326508_INS [dm3] 3L_11333408_INS [dm6]	G	GTTCAG	4.184e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7758095	2L_7758095_SNP [dm3] 2L_7758095_SNP [dm6]	A	C	4.185e^-4	0.89	INTRON CG7196
X	12367886	X_12367886_SNP [dm3] X_12473853_SNP [dm6]	G	T	4.186e^-4	0.89	INTRON CG42258
X	15284723	X_15284723_SNP [dm3] X_15390690_SNP [dm6]	G	C	4.189e^-4	0.89	SYNONYMOUS_CODING Cngl
3L	8621580	3L_8621580_SNP [dm3] 3L_8628480_SNP [dm6]	C	T	4.189e^-4	0.89	INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14158476	3L_14158476_SNP [dm3] 3L_14165376_SNP [dm6]	A	G	4.195e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20238609	X_20238609_SNP [dm3] X_20367582_SNP [dm6]	C	A	4.201e^-4	0.89	INTERGENIC
2L	7831727	2L_7831727_SNP [dm3] 2L_7831727_SNP [dm6]	A	C	4.203e^-4	0.89	INTRON mts
3L	6072378	3L_6072378_SNP [dm3] 3L_6079278_SNP [dm6]	G	A	4.204e^-4	0.89	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
3R	8499741	3R_8499741_DEL [dm3] 3R_12674019_DEL [dm6]	TA	T	4.204e^-4	0.89	UPSTREAM CG6188 DOWNSTREAM CG14395 INTERGENIC
2L	14305983	2L_14305983_SNP [dm3] 2L_14305983_SNP [dm6]	C	T	4.207e^-4	0.89	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	6890793	3L_6890793_DEL [dm3] 3L_6897693_DEL [dm6]	AAA	A	4.208e^-4	0.89	INTERGENIC
3L	8782291	3L_8782291_SNP [dm3] 3L_8789191_SNP [dm6]	A	T	4.213e^-4	0.89	SYNONYMOUS_CODING Fhos UPSTREAM CG5804
X	4772640	X_4772640_SNP [dm3] X_4878607_SNP [dm6]	A	G	4.222e^-4	0.89	INTRON CG42594
3R	17404985	3R_17404985_SNP [dm3] 3R_21579263_SNP [dm6]	A	G	4.226e^-4	0.89	SYNONYMOUS_CODING InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7391534	3L_7391534_SNP [dm3] 3L_7398434_SNP [dm6]	A	G	4.226e^-4	0.89	DOWNSTREAM CG32379 INTRON CG8562	TF binding site mE1_TFBS_cad
3L	13583689	3L_13583689_SNP [dm3] 3L_13590589_SNP [dm6]	T	C	4.231e^-4	0.89	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
3R	24077595	3R_24077595_SNP [dm3] 3R_28251873_SNP [dm6]	A	G	4.240e^-4	0.89	INTERGENIC
2R	9543941	2R_9543941_SNP [dm3] 2R_13656436_SNP [dm6]	C	T	4.241e^-4	0.89	INTRON fas
X	20224246	X_20224246_SNP [dm3] X_20353219_SNP [dm6]	A	C	4.244e^-4	0.89	INTERGENIC
2L	3649509	2L_3649509_SNP [dm3] 2L_3649509_SNP [dm6]	G	A	4.256e^-4	0.89	INTRON for
X	12929562	X_12929562_SNP [dm3] X_13035529_SNP [dm6]	T	A	4.258e^-4	0.89	INTRON rad
2R	9790904	2R_9790904_SNP [dm3] 2R_13903399_SNP [dm6]	A	G	4.258e^-4	0.89	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	17808225	X_17808225_SNP [dm3] X_17914192_SNP [dm6]	A	C	4.263e^-4	0.89	INTRON CG6847
2L	18588152	2L_18588152_SNP [dm3] 2L_18588152_SNP [dm6]	T	C	4.266e^-4	0.89	INTRON Pde11
3L	6072430	3L_6072430_SNP [dm3] 3L_6079330_SNP [dm6]	G	A	4.275e^-4	0.89	INTRON CG6619	TF binding site mE1_TFBS_cad
X	4092133	X_4092133_SNP [dm3] X_4198100_SNP [dm6]	G	C	4.279e^-4	0.89	INTRON Fas2
3R	23519908	3R_23519908_SNP [dm3] 3R_27694186_SNP [dm6]	G	A	4.280e^-4	0.89	UPSTREAM CG43319 & 1 other INTERGENIC
3L	10047709	3L_10047709_SNP [dm3] 3L_10054609_SNP [dm6]	A	G	4.290e^-4	0.89	INTRON dpr6
X	17095406	X_17095406_SNP [dm3] X_17201373_SNP [dm6]	A	G	4.291e^-4	0.89	SYNONYMOUS_CODING CG8918 DOWNSTREAM baz
3R	22720046	3R_22720046_SNP [dm3] 3R_26894324_SNP [dm6]	C	A	4.299e^-4	0.89	INTRON T48	regulatory region REDfly_CRMs
X	22165640	X_22165640_SNP [dm3] X_22763804_SNP [dm6]	T	A	4.299e^-4	0.89	DOWNSTREAM CR44109 INTRON CR44997
2L	21363933	2L_21363933_SNP [dm3] 2L_21363933_SNP [dm6]	A	G	4.303e^-4	0.89	NON_SYNONYMOUS_CODING dtr
2L	3589296	2L_3589296_SNP [dm3] 2L_3589296_SNP [dm6]	G	A	4.306e^-4	0.89	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	13374226	3R_13374226_SNP [dm3] 3R_17548504_SNP [dm6]	T	G	4.314e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14141762	3L_14141762_SNP [dm3] 3L_14148662_SNP [dm6]	C	T	4.318e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
3L	11408455	3L_11408455_SNP [dm3] 3L_11415355_SNP [dm6]	T	C	4.330e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11408457	3L_11408457_SNP [dm3] 3L_11415357_SNP [dm6]	A	G	4.330e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7175615	3R_7175615_SNP [dm3] 3R_11349893_SNP [dm6]	A	C	4.332e^-4	0.89	SYNONYMOUS_CODING KP78a START_GAINED KP78b UTR_5_PRIME KP78b INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	4186509	3L_4186509_SNP [dm3] 3L_4186509_SNP [dm6]	T	C	4.334e^-4	0.89	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16750929	3L_16750929_SNP [dm3] 3L_16757829_SNP [dm6]	A	T	4.350e^-4	0.89	INTERGENIC
3R	10816281	3R_10816281_INS [dm3] 3R_14990559_INS [dm6]	G	GCG	4.359e^-4	0.89	INTERGENIC
2R	15294735	2R_15294735_SNP [dm3] 2R_19407230_SNP [dm6]	A	T	4.362e^-4	0.89	INTRON hts
2R	9439242	2R_9439242_SNP [dm3] 2R_13551737_SNP [dm6]	A	T	4.375e^-4	0.89	UPSTREAM CG33156 INTRON CG33156
X	3103252	X_3103252_SNP [dm3] X_3209219_SNP [dm6]	G	C	4.376e^-4	0.89	INTRON dnc
2R	7900166	2R_7900166_SNP [dm3] 2R_12012661_SNP [dm6]	T	C	4.379e^-4	0.89	INTRON otk
2R	14370271	2R_14370271_SNP [dm3] 2R_18482766_SNP [dm6]	C	T	4.380e^-4	0.89	INTRON CG30116
X	19000975	X_19000975_INS [dm3] X_19106942_INS [dm6]	A	ACAA	4.395e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16126116	2R_16126116_SNP [dm3] 2R_20238611_SNP [dm6]	G	T	4.396e^-4	0.89	NON_SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099
2L	21105588	2L_21105588_SNP [dm3] 2L_21105588_SNP [dm6]	A	T	4.406e^-4	0.89	INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6793371	2L_6793371_SNP [dm3] 2L_6793371_SNP [dm6]	T	A	4.407e^-4	0.89	SPLICE_SITE_REGION nrv2 UTR_5_PRIME nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793385	2L_6793385_SNP [dm3] 2L_6793385_SNP [dm6]	T	G	4.407e^-4	0.89	UTR_5_PRIME nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14261944	2L_14261944_SNP [dm3] 2L_14261944_SNP [dm6]	T	C	4.424e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	8262076	2L_8262076_SNP [dm3] 2L_8262076_SNP [dm6]	G	A	4.426e^-4	0.89	SPLICE_SITE_REGION Btk29A INTRON Btk29A
3L	6888288	3L_6888288_SNP [dm3] 3L_6895188_SNP [dm6]	G	C	4.429e^-4	0.89	INTERGENIC
2L	10509402	2L_10509402_SNP [dm3] 2L_10509402_SNP [dm6]	C	A	4.433e^-4	0.89	INTRON CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13694833	2L_13694833_SNP [dm3] 2L_13694833_SNP [dm6]	A	T	4.433e^-4	0.89	INTRON CG31814
3R	13263100	3R_13263100_SNP [dm3] 3R_17437378_SNP [dm6]	A	G	4.437e^-4	0.89	INTRON CG5873
3R	21490702	3R_21490702_DEL [dm3] 3R_25664980_DEL [dm6]	CA	T	4.441e^-4	0.89	UTR_3_PRIME RASSF8 UPSTREAM Lgr3
3L	8969719	3L_8969719_SNP [dm3] 3L_8976619_SNP [dm6]	A	G	4.445e^-4	0.89	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9983754	3R_9983754_SNP [dm3] 3R_14158032_SNP [dm6]	G	A	4.448e^-4	0.89	SYNONYMOUS_CODING CG31327 UPSTREAM CG31533	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10806123	3L_10806123_SNP [dm3] 3L_10813023_SNP [dm6]	C	A	4.460e^-4	0.89	INTERGENIC
2L	17115082	2L_17115082_SNP [dm3] 2L_17115082_SNP [dm6]	G	C	4.464e^-4	0.89	INTERGENIC
2L	18742391	2L_18742391_SNP [dm3] 2L_18742391_SNP [dm6]	A	T	4.466e^-4	0.89	INTERGENIC
3L	11373304	3L_11373304_SNP [dm3] 3L_11380204_SNP [dm6]	T	C	4.469e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9865872	3R_9865872_SNP [dm3] 3R_14040150_SNP [dm6]	G	T	4.474e^-4	0.89	INTERGENIC
X	20005863	X_20005863_SNP [dm3] X_20111830_SNP [dm6]	A	T	4.479e^-4	0.89	INTERGENIC
3L	18413411	3L_18413411_SNP [dm3] 3L_18420311_SNP [dm6]	T	C	4.479e^-4	0.89	INTERGENIC
2L	7761746	2L_7761746_SNP [dm3] 2L_7761746_SNP [dm6]	G	A	4.480e^-4	0.89	INTRON CG7196
2L	17350037	2L_17350037_SNP [dm3] 2L_17350037_SNP [dm6]	G	T	4.483e^-4	0.89	INTERGENIC
2L	18779650	2L_18779650_SNP [dm3] 2L_18779650_SNP [dm6]	C	T	4.487e^-4	0.89	INTRON ham	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	5577554	2L_5577554_SNP [dm3] 2L_5577554_SNP [dm6]	A	G	4.490e^-4	0.89	INTERGENIC
3R	13326243	3R_13326243_SNP [dm3] 3R_17500521_SNP [dm6]	T	G	4.495e^-4	0.89	INTRON Dscam3
3R	4962916	3R_4962916_SNP [dm3] 3R_9137194_SNP [dm6]	A	G	4.513e^-4	0.89	INTRON pum
X	21337210	X_21337210_SNP [dm3] X_21466183_SNP [dm6]	C	G	4.522e^-4	0.89	DOWNSTREAM CR45507 INTERGENIC
2L	2979431	2L_2979431_SNP [dm3] 2L_2979431_SNP [dm6]	A	C	4.525e^-4	0.89	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7580671	2L_7580671_SNP [dm3] 2L_7580671_SNP [dm6]	G	T	4.525e^-4	0.89	INTERGENIC
2R	17195525	2R_17195525_SNP [dm3] 2R_21308020_SNP [dm6]	A	G	4.526e^-4	0.89	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
3L	2629386	3L_2629386_SNP [dm3] 3L_2629386_SNP [dm6]	G	C	4.533e^-4	0.89	START_GAINED Pxn UTR_5_PRIME Pxn UPSTREAM Pxn DOWNSTREAM CR45660
X	16724387	X_16724387_SNP [dm3] X_16830354_SNP [dm6]	C	T	4.536e^-4	0.89	INTRON CG13004
3L	6888190	3L_6888190_SNP [dm3] 3L_6895090_SNP [dm6]	G	T	4.540e^-4	0.89	INTERGENIC
X	17328642	X_17328642_SNP [dm3] X_17434609_SNP [dm6]	T	C	4.543e^-4	0.89	INTRON CG12994
3L	8968298	3L_8968298_SNP [dm3] 3L_8975198_SNP [dm6]	C	G	4.546e^-4	0.89	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16132726	3R_16132726_SNP [dm3] 3R_20307004_SNP [dm6]	T	A	4.556e^-4	0.89	INTRON CG4362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13326315	3R_13326315_INS [dm3] 3R_17500593_INS [dm6]	T	TT	4.558e^-4	0.89	INTRON Dscam3
2L	18550170	2L_18550170_SNP [dm3] 2L_18550170_SNP [dm6]	A	T	4.570e^-4	0.89	INTRON Pde11
3R	15678555	3R_15678555_SNP [dm3] 3R_19852833_SNP [dm6]	T	G	4.571e^-4	0.89	UTR_3_PRIME CG4662 INTRON CG4662	TF binding site mE1_TFBS_cad
2R	9588169	2R_9588169_SNP [dm3] 2R_13700664_SNP [dm6]	G	T	4.574e^-4	0.89	INTRON fas
X	7265023	X_7265023_SNP [dm3] X_7370990_SNP [dm6]	T	G	4.574e^-4	0.89	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16499311	X_16499311_SNP [dm3] X_16605278_SNP [dm6]	C	T	4.580e^-4	0.89	NON_SYNONYMOUS_CODING Nup153 UPSTREAM mir-4965	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9572272	2L_9572272_SNP [dm3] 2L_9572272_SNP [dm6]	T	C	4.585e^-4	0.89	SYNONYMOUS_CODING CG3838
3L	2697498	3L_2697498_SNP [dm3] 3L_2697498_SNP [dm6]	T	C	4.585e^-4	0.89	INTRON Fife
2L	19051746	2L_19051746_SNP [dm3] 2L_19051746_SNP [dm6]	G	A	4.590e^-4	0.89	UPSTREAM Rpn3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2R	9360567	2R_9360567_INS [dm3] 2R_13473062_INS [dm6]	C	CCCCACTGCCGAACGCTC...	4.595e^-4	0.89	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13627568	X_13627568_SNP [dm3] X_13733535_SNP [dm6]	G	T	4.600e^-4	0.89	SYNONYMOUS_CODING g
X	12895083	X_12895083_SNP [dm3] X_13001050_SNP [dm6]	T	A	4.603e^-4	0.89	INTRON rad
X	20240430	X_20240430_DEL [dm3] X_20369403_DEL [dm6]	ATA	A	4.615e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20385254	2L_20385254_SNP [dm3] 2L_20385254_SNP [dm6]	T	A	4.617e^-4	0.89	DOWNSTREAM CG10947 INTERGENIC
3R	6005679	3R_6005679_SNP [dm3] 3R_10179957_SNP [dm6]	A	G	4.627e^-4	0.89	INTRON CG12814
3L	16317423	3L_16317423_INS [dm3] 3L_16324323_INS [dm6]	A	AA	4.634e^-4	0.89	DOWNSTREAM CG13040 & 1 other INTERGENIC
X	20259247	X_20259247_SNP [dm3] X_20388220_SNP [dm6]	A	C	4.643e^-4	0.89	INTERGENIC
2L	2050288	2L_2050288_SNP [dm3] 2L_2050288_SNP [dm6]	C	T	4.646e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14066777	2L_14066777_SNP [dm3] 2L_14066777_SNP [dm6]	C	G	4.650e^-4	0.89	INTRON nAChRalpha5
X	20238594	X_20238594_SNP [dm3] X_20367567_SNP [dm6]	C	T	4.653e^-4	0.89	INTERGENIC
3L	18168220	3L_18168220_SNP [dm3] 3L_18175120_SNP [dm6]	G	T	4.658e^-4	0.89	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5251321	X_5251321_SNP [dm3] X_5357288_SNP [dm6]	A	T	4.658e^-4	0.89	UPSTREAM SK INTRON SK
3R	15962169	3R_15962169_SNP [dm3] 3R_20136447_SNP [dm6]	T	C	4.678e^-4	0.89	INTERGENIC
X	11660982	X_11660982_SNP [dm3] X_11766949_SNP [dm6]	G	A	4.681e^-4	0.89	INTRON m
3R	2466787	3R_2466787_SNP [dm3] 3R_6641065_SNP [dm6]	T	C	4.683e^-4	0.89	UPSTREAM CG31286 INTERGENIC
3L	1562268	3L_1562268_SNP [dm3] 3L_1562268_SNP [dm6]	C	A	4.694e^-4	0.89	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11346180	2L_11346180_SNP [dm3] 2L_11346180_SNP [dm6]	C	A	4.695e^-4	0.89	INTERGENIC
2R	7737687	2R_7737687_SNP [dm3] 2R_11850182_SNP [dm6]	A	C	4.700e^-4	0.89	SYNONYMOUS_CODING Sln	TF binding site mE1_TFBS_chinmo
3R	7186508	3R_7186508_SNP [dm3] 3R_11360786_SNP [dm6]	C	T	4.707e^-4	0.89	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	5514407	3L_5514407_SNP [dm3] 3L_5521307_SNP [dm6]	G	C	4.711e^-4	0.89	INTRON Lkr
3R	22352367	3R_22352367_SNP [dm3] 3R_26526645_SNP [dm6]	T	A	4.731e^-4	0.89	INTRON plum	TF binding site mE1_TFBS_cnc
2L	243207	2L_243207_SNP [dm3] 2L_243207_SNP [dm6]	C	T	4.734e^-4	0.89	UPSTREAM mir-965 INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	8192044	X_8192044_SNP [dm3] X_8298011_SNP [dm6]	T	A	4.734e^-4	0.89	INTRON nAChRalpha3
X	17318217	X_17318217_SNP [dm3] X_17424184_SNP [dm6]	A	G	4.735e^-4	0.89	INTRON CG12994 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	13579163	3L_13579163_SNP [dm3] 3L_13586063_SNP [dm6]	C	A	4.735e^-4	0.89	INTRON bru-3
2R	6671853	2R_6671853_SNP [dm3] 2R_10784348_SNP [dm6]	C	A	4.738e^-4	0.89	INTRON CG33144 EXON CR44299
2R	8835247	2R_8835247_SNP [dm3] 2R_12947742_SNP [dm6]	A	G	4.743e^-4	0.89	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18341979	3L_18341979_SNP [dm3] 3L_18348879_SNP [dm6]	A	G	4.743e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10461096	X_10461096_SNP [dm3] X_10567063_SNP [dm6]	C	T	4.750e^-4	0.89	UPSTREAM CG15296 INTRON spri
2L	177507	2L_177507_DEL [dm3] 2L_177507_DEL [dm6]	TGTGGAAATG	CC	4.750e^-4	0.89	INTRON spen
3L	965820	3L_965820_SNP [dm3] 3L_965820_SNP [dm6]	C	A	4.752e^-4	0.89	INTRON Glut1	TF binding site BDTNP1_TFBS_dl
2R	9282659	2R_9282659_SNP [dm3] 2R_13395154_SNP [dm6]	G	T	4.753e^-4	0.89	NON_SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
2R	9283419	2R_9283419_SNP [dm3] 2R_13395914_SNP [dm6]	C	G	4.753e^-4	0.89	NON_SYNONYMOUS_CODING CG4744
2R	17643746	2R_17643746_SNP [dm3] 2R_21756241_SNP [dm6]	A	T	4.758e^-4	0.89	INTERGENIC
3L	4989611	3L_4989611_DEL [dm3] 3L_4989611_DEL [dm6]	TAG	C	4.764e^-4	0.89	INTRON Con
3L	6543369	3L_6543369_SNP [dm3] 3L_6550269_SNP [dm6]	A	C	4.768e^-4	0.89	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	21486240	3R_21486240_SNP [dm3] 3R_25660518_SNP [dm6]	G	A	4.775e^-4	0.89	INTRON Tnks	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22063758	X_22063758_SNP [dm3] X_22661922_SNP [dm6]	C	G	4.776e^-4	0.89	INTRON CR44997
3L	10450310	3L_10450310_SNP [dm3] 3L_10457210_SNP [dm6]	T	C	4.783e^-4	0.89	INTERGENIC
3L	8946103	3L_8946103_SNP [dm3] 3L_8953003_SNP [dm6]	C	T	4.785e^-4	0.89	START_GAINED CG43783 & 1 other UTR_5_PRIME CG43783 & 1 other INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	24825384	3R_24825384_SNP [dm3] 3R_28999662_SNP [dm6]	A	T	4.797e^-4	0.89	INTRON wat
2L	16320805	2L_16320805_SNP [dm3] 2L_16320805_SNP [dm6]	T	G	4.797e^-4	0.89	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18753821	2L_18753821_SNP [dm3] 2L_18753821_SNP [dm6]	A	G	4.799e^-4	0.89	INTERGENIC
2L	18753836	2L_18753836_SNP [dm3] 2L_18753836_SNP [dm6]	A	C	4.799e^-4	0.89	INTERGENIC
3R	2759723	3R_2759723_SNP [dm3] 3R_6934001_SNP [dm6]	T	A	4.801e^-4	0.89	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	8926446	2L_8926446_SNP [dm3] 2L_8926446_SNP [dm6]	G	A	4.803e^-4	0.89	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19044323	2R_19044323_SNP [dm3] 2R_23156800_SNP [dm6]	A	G	4.833e^-4	0.89	DOWNSTREAM CG13545 INTRON CG9899
3R	16273038	3R_16273038_SNP [dm3] 3R_20447316_SNP [dm6]	G	T	4.853e^-4	0.89	INTRON Gfrl
2L	5855600	2L_5855600_SNP [dm3] 2L_5855600_SNP [dm6]	C	T	4.854e^-4	0.89	INTRON TrissinR
2L	15031863	2L_15031863_SNP [dm3] 2L_15031863_SNP [dm6]	A	G	4.863e^-4	0.89	UPSTREAM CG31832 INTRON GABA-B-R1
3L	6071911	3L_6071911_SNP [dm3] 3L_6078811_SNP [dm6]	G	A	4.865e^-4	0.89	INTRON CG6619	TF binding site mE1_TFBS_cad
3L	9992426	3L_9992426_SNP [dm3] 3L_9999326_SNP [dm6]	T	G	4.867e^-4	0.89	INTRON dpr6
2L	4934450	2L_4934450_SNP [dm3] 2L_4934450_SNP [dm6]	G	T	4.873e^-4	0.89	SYNONYMOUS_CODING hoe2
3L	1823354	3L_1823354_SNP [dm3] 3L_1823354_SNP [dm6]	T	C	4.877e^-4	0.89	DOWNSTREAM GV1 & 1 other INTERGENIC
3L	1823360	3L_1823360_SNP [dm3] 3L_1823360_SNP [dm6]	C	A	4.877e^-4	0.89	DOWNSTREAM GV1 & 1 other INTERGENIC
3L	1823361	3L_1823361_SNP [dm3] 3L_1823361_SNP [dm6]	A	T	4.877e^-4	0.89	DOWNSTREAM GV1 & 1 other INTERGENIC
2L	20995560	2L_20995560_SNP [dm3] 2L_20995560_SNP [dm6]	T	C	4.893e^-4	0.89	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	7913104	X_7913104_SNP [dm3] X_8019071_SNP [dm6]	C	T	4.894e^-4	0.89	DOWNSTREAM CG15333 INTRON Tbh
X	11256084	X_11256084_SNP [dm3] X_11362051_SNP [dm6]	C	A	4.895e^-4	0.89	INTRON hop	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3815261	2L_3815261_SNP [dm3] 2L_3815261_SNP [dm6]	T	A	4.904e^-4	0.89	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21383855	2L_21383855_SNP [dm3] 2L_21383855_SNP [dm6]	C	T	4.905e^-4	0.89	INTRON nrv3	transposable element FlyBase
2L	8926929	2L_8926929_SNP [dm3] 2L_8926929_SNP [dm6]	C	A	4.915e^-4	0.89	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6793164	2L_6793164_SNP [dm3] 2L_6793164_SNP [dm6]	C	T	4.918e^-4	0.89	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793171	2L_6793171_DEL [dm3] 2L_6793171_DEL [dm6]	CAGC	A	4.918e^-4	0.89	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13326339	3R_13326339_SNP [dm3] 3R_17500617_SNP [dm6]	G	A	4.925e^-4	0.89	INTRON Dscam3
3L	7065124	3L_7065124_SNP [dm3] 3L_7072024_SNP [dm6]	G	T	4.928e^-4	0.89	INTRON CG8641
2R	7902051	2R_7902051_DEL [dm3] 2R_12014546_DEL [dm6]	ATTATTG	A	4.933e^-4	0.89	UPSTREAM CR44306 INTRON otk
2L	1357213	2L_1357213_SNP [dm3] 2L_1357213_SNP [dm6]	G	T	4.954e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8443188	2L_8443188_SNP [dm3] 2L_8443188_SNP [dm6]	A	C	4.956e^-4	0.89	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
3L	8191228	3L_8191228_SNP [dm3] 3L_8198128_SNP [dm6]	C	G	4.958e^-4	0.89	UPSTREAM CG8005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8191353	3L_8191353_SNP [dm3] 3L_8198253_SNP [dm6]	C	G	4.958e^-4	0.89	UTR_5_PRIME CG8005 UPSTREAM Ubc12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8191517	3L_8191517_SNP [dm3] 3L_8198417_SNP [dm6]	A	G	4.958e^-4	0.89	SYNONYMOUS_CODING CG8005 UPSTREAM Ubc12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22458737	3L_22458737_SNP [dm3] 3L_22465637_SNP [dm6]	T	A	4.960e^-4	0.89	UTR_5_PRIME CG11438	TF binding site mE1_TFBS_cad
3L	3162258	3L_3162258_SNP [dm3] 3L_3162258_SNP [dm6]	G	C	4.960e^-4	0.89	SYNONYMOUS_CODING rasp DOWNSTREAM pfk	TF binding site BDTNP1_TFBS_dl
2R	8835248	2R_8835248_SNP [dm3] 2R_12947743_SNP [dm6]	A	T	4.964e^-4	0.89	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8835250	2R_8835250_SNP [dm3] 2R_12947745_SNP [dm6]	G	T	4.964e^-4	0.89	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10309783	X_10309783_SNP [dm3] X_10415750_SNP [dm6]	C	G	4.966e^-4	0.89	INTRON CG32683
X	16715572	X_16715572_SNP [dm3] X_16821539_SNP [dm6]	T	C	4.973e^-4	0.89	INTRON CG4829
3L	15638882	3L_15638882_SNP [dm3] 3L_15645782_SNP [dm6]	A	C	4.982e^-4	0.89	INTRON comm3
3R	10208475	3R_10208475_SNP [dm3] 3R_14382753_SNP [dm6]	A	T	4.983e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11351096	3L_11351096_SNP [dm3] 3L_11357996_SNP [dm6]	C	T	4.985e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16750926	3L_16750926_SNP [dm3] 3L_16757826_SNP [dm6]	T	C	4.985e^-4	0.89	INTERGENIC
3L	6895789	3L_6895789_SNP [dm3] 3L_6902689_SNP [dm6]	T	A	4.986e^-4	0.89	INTERGENIC
2L	14662699	2L_14662699_SNP [dm3] 2L_14662699_SNP [dm6]	A	T	4.999e^-4	0.89	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21979061	2L_21979061_SNP [dm3] 2L_21979061_SNP [dm6]	T	A	5.010e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14320763	3R_14320763_INS [dm3] 3R_18495041_INS [dm6]	T	TGAATTTAATTTCACAACTC...	5.013e^-4	0.89	INTRON fru
X	19056477	X_19056477_SNP [dm3] X_19162444_SNP [dm6]	G	T	5.015e^-4	0.89	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	15982871	X_15982871_SNP [dm3] X_16088838_SNP [dm6]	T	A	5.020e^-4	0.89	INTRON Tob	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8976890	3L_8976890_DEL [dm3] 3L_8983790_DEL [dm6]	TAA	T	5.027e^-4	0.89	DOWNSTREAM CG13314 INTRON Galk	TF binding site mE1_TFBS_HSA
3R	9067953	3R_9067953_SNP [dm3] 3R_13242231_SNP [dm6]	C	T	5.035e^-4	0.89	INTRON Ace
2L	18577818	2L_18577818_SNP [dm3] 2L_18577818_SNP [dm6]	T	A	5.047e^-4	0.89	INTRON Pde11
3R	26432450	3R_26432450_SNP [dm3] 3R_30606728_SNP [dm6]	A	T	5.048e^-4	0.89	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	26432469	3R_26432469_SNP [dm3] 3R_30606747_SNP [dm6]	G	A	5.048e^-4	0.89	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	26432773	3R_26432773_SNP [dm3] 3R_30607051_SNP [dm6]	G	T	5.048e^-4	0.89	SPLICE_SITE_REGION CG31016 DOWNSTREAM PH4alphaNE3 INTRON CG31016	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16724391	X_16724391_SNP [dm3] X_16830358_SNP [dm6]	A	T	5.058e^-4	0.89	INTRON CG13004
3L	17165196	3L_17165196_SNP [dm3] 3L_17172096_SNP [dm6]	C	G	5.061e^-4	0.89	INTRON Rbp6

By genomic position
Variant impact
Gene name

HeightClimbed phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results