DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.376e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1881 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12687447	2R_12687447_SNP [dm3] 2R_16799942_SNP [dm6]	T	A	5.040e^-7	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	10885834	2L_10885834_SNP [dm3] 2L_10885834_SNP [dm6]	A	G	1.110e^-6	0.878	UPSTREAM CR44490 INTERGENIC
3R	12888013	3R_12888013_SNP [dm3] 3R_17062291_SNP [dm6]	C	T	3.487e^-6	0.878	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12687356	2R_12687356_DEL [dm3] 2R_16799851_DEL [dm6]	TGGTGAATT	T	3.739e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	12687436	2R_12687436_SNP [dm3] 2R_16799931_SNP [dm6]	G	A	4.169e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	12111465	2R_12111465_SNP [dm3] 2R_16223960_SNP [dm6]	G	T	4.475e^-6	0.878	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA
2R	12687446	2R_12687446_SNP [dm3] 2R_16799941_SNP [dm6]	T	C	4.582e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11847029	3L_11847029_SNP [dm3] 3L_11853929_SNP [dm6]	A	C	5.315e^-6	0.878	INTRON CG44837
2R	12687371	2R_12687371_SNP [dm3] 2R_16799866_SNP [dm6]	A	G	5.526e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	12687403	2R_12687403_SNP [dm3] 2R_16799898_SNP [dm6]	T	G	5.918e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	26255759	3R_26255759_SNP [dm3] 3R_30430037_SNP [dm6]	T	A	5.934e^-6	0.878	INTRON CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12687965	2R_12687965_SNP [dm3] 2R_16800460_SNP [dm6]	T	C	7.977e^-6	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	16819682	X_16819682_SNP [dm3] X_16925649_SNP [dm6]	G	C	8.067e^-6	0.878	INTRON CG4928
3R	12888003	3R_12888003_SNP [dm3] 3R_17062281_SNP [dm6]	T	A	9.095e^-6	0.878	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14493569	2R_14493569_SNP [dm3] 2R_18606064_SNP [dm6]	T	A	1.113e^-5	0.878	INTRON GEFmeso
3R	6743400	3R_6743400_SNP [dm3] 3R_10917678_SNP [dm6]	C	T	1.158e^-5	0.878	INTERGENIC
3L	11846981	3L_11846981_SNP [dm3] 3L_11853881_SNP [dm6]	G	T	1.348e^-5	0.878	INTRON CG44837
3R	26255757	3R_26255757_INS [dm3] 3R_30430035_INS [dm6]	T	TC	1.454e^-5	0.878	INTRON CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7874300	2R_7874300_DEL [dm3] 2R_11986795_DEL [dm6]	AGCGTAGTGCTACT...	A	1.574e^-5	0.878	UTR_3_PRIME rho-7 & 1 other	TF binding site mE1_TFBS_sens
2L	4080642	2L_4080642_SNP [dm3] 2L_4080642_SNP [dm6]	C	G	1.583e^-5	0.878	INTRON ed	TF binding site BDTNP1_TFBS_dl
3R	22818632	3R_22818632_SNP [dm3] 3R_26992910_SNP [dm6]	A	T	1.589e^-5	0.878	INTERGENIC
3L	1007912	3L_1007912_SNP [dm3] 3L_1007912_SNP [dm6]	G	A	1.618e^-5	0.878	UPSTREAM trio INTRON trio	TF binding site mE1_TFBS_inv
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	1.644e^-5	0.878	INTERGENIC
2L	9179605	2L_9179605_DEL [dm3] 2L_9179605_DEL [dm6]	TT	A	1.671e^-5	0.878	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9035324	2L_9035324_SNP [dm3] 2L_9035324_SNP [dm6]	G	T	1.702e^-5	0.878	INTERGENIC
3R	12605734	3R_12605734_SNP [dm3] 3R_16780012_SNP [dm6]	T	C	1.707e^-5	0.878	INTERGENIC
2R	12687558	2R_12687558_INS [dm3] 2R_16800053_INS [dm6]	A	ATTTTTTACATTAA...	1.768e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	1.799e^-5	0.878	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	12687381	2R_12687381_SNP [dm3] 2R_16799876_SNP [dm6]	T	A	1.808e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	12888015	3R_12888015_SNP [dm3] 3R_17062293_SNP [dm6]	C	T	1.822e^-5	0.878	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16740735	3L_16740735_SNP [dm3] 3L_16747635_SNP [dm6]	C	G	1.832e^-5	0.878	INTERGENIC
2R	14322014	2R_14322014_SNP [dm3] 2R_18434509_SNP [dm6]	T	G	1.885e^-5	0.878	INTRON CG30118
3R	12520991	3R_12520991_SNP [dm3] 3R_16695269_SNP [dm6]	A	T	2.009e^-5	0.878	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3979048	3L_3979048_DEL [dm3] 3L_3979048_DEL [dm6]	ACA	A	2.031e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12687476	2R_12687476_SNP [dm3] 2R_16799971_SNP [dm6]	A	T	2.240e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	12687465	2R_12687465_DEL [dm3] 2R_16799960_DEL [dm6]	TG	T	2.399e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	16700783	2L_16700783_INS [dm3] 2L_16700783_INS [dm6]	G	GAT	2.479e^-5	0.878	DOWNSTREAM grp & 1 other EXON CR43669
2R	12687477	2R_12687477_SNP [dm3] 2R_16799972_SNP [dm6]	A	G	2.480e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	13398371	2R_13398371_SNP [dm3] 2R_17510866_SNP [dm6]	G	A	2.481e^-5	0.878	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
2R	12927738	2R_12927738_SNP [dm3] 2R_17040233_SNP [dm6]	C	A	2.503e^-5	0.878	INTRON RhoGEF2 EXON CR45145
3L	11846806	3L_11846806_SNP [dm3] 3L_11853706_SNP [dm6]	T	G	2.521e^-5	0.878	INTRON CG44837
2R	12687473	2R_12687473_INS [dm3] 2R_16799968_INS [dm6]	A	AT	2.544e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11846459	3L_11846459_SNP [dm3] 3L_11853359_SNP [dm6]	A	G	2.559e^-5	0.878	INTRON CG44837
X	20515241	X_20515241_SNP [dm3] X_20644214_SNP [dm6]	A	G	2.592e^-5	0.878	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8579762	3L_8579762_SNP [dm3] 3L_8586662_SNP [dm6]	G	C	2.656e^-5	0.878	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	12687908	2R_12687908_SNP [dm3] 2R_16800403_SNP [dm6]	C	T	2.690e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	12687426	2R_12687426_SNP [dm3] 2R_16799921_SNP [dm6]	A	T	2.709e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7874315	2R_7874315_SNP [dm3] 2R_11986810_SNP [dm6]	G	A	2.754e^-5	0.878	UTR_3_PRIME rho-7 & 1 other	TF binding site mE1_TFBS_sens
2R	13472400	2R_13472400_SNP [dm3] 2R_17584895_SNP [dm6]	A	G	2.799e^-5	0.878	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
2L	9035277	2L_9035277_SNP [dm3] 2L_9035277_SNP [dm6]	G	T	2.882e^-5	0.878	INTERGENIC
2R	1251733	2R_1251733_SNP [dm3] 2R_5364228_SNP [dm6]	G	A	2.887e^-5	0.878	INTRON CR42646 EXON CR42646
2R	1260892	2R_1260892_SNP [dm3] 2R_5373387_SNP [dm6]	G	A	2.887e^-5	0.878	INTERGENIC	transposable element FlyBase
2R	1263229	2R_1263229_SNP [dm3] 2R_5375724_SNP [dm6]	A	G	2.887e^-5	0.878	INTERGENIC	transposable element FlyBase
2R	1264160	2R_1264160_DEL [dm3] 2R_5376655_DEL [dm6]	TCTTGTA	GG	2.887e^-5	0.878	INTERGENIC	transposable element FlyBase
2R	1264168	2R_1264168_SNP [dm3] 2R_5376663_SNP [dm6]	A	G	2.887e^-5	0.878	INTERGENIC	transposable element FlyBase
2R	1264180	2R_1264180_SNP [dm3] 2R_5376675_SNP [dm6]	T	A	2.887e^-5	0.878	INTERGENIC	transposable element FlyBase
2R	1253433	2R_1253433_SNP [dm3] 2R_5365928_SNP [dm6]	C	T	2.889e^-5	0.878	EXON CR42646
2R	1264792	2R_1264792_SNP [dm3] 2R_5377287_SNP [dm6]	C	A	2.901e^-5	0.878	INTERGENIC	transposable element FlyBase
3R	12510232	3R_12510232_SNP [dm3] 3R_16684510_SNP [dm6]	G	A	2.927e^-5	0.878	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sbb
X	15288048	X_15288048_SNP [dm3] X_15394015_SNP [dm6]	T	C	3.046e^-5	0.878	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2L	3413976	2L_3413976_SNP [dm3] 2L_3413976_SNP [dm6]	T	C	3.139e^-5	0.878	INTRON pgant2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3413986	2L_3413986_SNP [dm3] 2L_3413986_SNP [dm6]	T	C	3.139e^-5	0.878	INTRON pgant2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14322005	2R_14322005_SNP [dm3] 2R_18434500_SNP [dm6]	C	T	3.142e^-5	0.878	INTRON CG30118
2R	7874247	2R_7874247_DEL [dm3] 2R_11986742_DEL [dm6]	TT	T	3.145e^-5	0.878	UTR_3_PRIME rho-7 & 1 other	TF binding site mE1_TFBS_sens
2R	12687376	2R_12687376_SNP [dm3] 2R_16799871_SNP [dm6]	T	C	3.171e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	1264120	2R_1264120_SNP [dm3] 2R_5376615_SNP [dm6]	A	C	3.202e^-5	0.878	INTERGENIC	transposable element FlyBase
3R	13551918	3R_13551918_SNP [dm3] 3R_17726196_SNP [dm6]	T	C	3.259e^-5	0.878	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18185165	3L_18185165_SNP [dm3] 3L_18192065_SNP [dm6]	A	T	3.268e^-5	0.878	INTERGENIC
3R	23856598	3R_23856598_SNP [dm3] 3R_28030876_SNP [dm6]	G	T	3.348e^-5	0.878	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11730428	3L_11730428_SNP [dm3] 3L_11737328_SNP [dm6]	G	A	3.391e^-5	0.878	INTRON CG6024	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19202958	2R_19202958_SNP [dm3] 2R_23315435_SNP [dm6]	A	G	3.399e^-5	0.878	INTERGENIC
3R	12524393	3R_12524393_SNP [dm3] 3R_16698671_SNP [dm6]	A	G	3.426e^-5	0.878	INTRON Ubx	regulatory region REDfly_CRMs
3R	8066983	3R_8066983_SNP [dm3] 3R_12241261_SNP [dm6]	C	T	3.579e^-5	0.878	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12510244	3R_12510244_SNP [dm3] 3R_16684522_SNP [dm6]	A	T	3.610e^-5	0.878	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	16721156	3L_16721156_SNP [dm3] 3L_16728056_SNP [dm6]	C	T	3.616e^-5	0.878	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	14530546	2R_14530546_SNP [dm3] 2R_18643041_SNP [dm6]	T	G	3.637e^-5	0.878	INTRON SP2637
2R	11612951	2R_11612951_SNP [dm3] 2R_15725446_SNP [dm6]	G	A	3.687e^-5	0.878	INTERGENIC
2R	12623697	2R_12623697_SNP [dm3] 2R_16736192_SNP [dm6]	T	C	3.721e^-5	0.878	DOWNSTREAM CG43104 INTERGENIC
3R	12509231	3R_12509231_SNP [dm3] 3R_16683509_SNP [dm6]	G	A	3.760e^-5	0.878	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15283143	2L_15283143_SNP [dm3] 2L_15283143_SNP [dm6]	A	T	3.799e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11846811	3L_11846811_SNP [dm3] 3L_11853711_SNP [dm6]	T	G	3.836e^-5	0.878	INTRON CG44837
2L	1623493	2L_1623493_SNP [dm3] 2L_1623493_SNP [dm6]	G	A	3.843e^-5	0.878	UPSTREAM CR44603 EXON CR44603
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.974e^-5	0.886	INTRON wat
2L	9035256	2L_9035256_SNP [dm3] 2L_9035256_SNP [dm6]	A	G	4.017e^-5	0.886	INTERGENIC
2R	1325991	2R_1325991_SNP [dm3] 2R_5438486_SNP [dm6]	G	C	4.076e^-5	0.886	INTRON laccase2
3R	22818557	3R_22818557_SNP [dm3] 3R_26992835_SNP [dm6]	A	T	4.364e^-5	0.886	INTERGENIC
2L	9035355	2L_9035355_SNP [dm3] 2L_9035355_SNP [dm6]	T	A	4.460e^-5	0.886	INTERGENIC
2L	3411205	2L_3411205_SNP [dm3] 2L_3411205_SNP [dm6]	C	A	4.505e^-5	0.886	DOWNSTREAM CG8840 INTRON pgant2
3L	14912246	3L_14912246_SNP [dm3] 3L_14919146_SNP [dm6]	A	T	4.583e^-5	0.886	INTRON DCX-EMAP
3R	13924370	3R_13924370_SNP [dm3] 3R_18098648_SNP [dm6]	G	A	4.627e^-5	0.886	INTRON sr
2R	17293376	2R_17293376_SNP [dm3] 2R_21405871_SNP [dm6]	T	C	4.684e^-5	0.886	INTRON Sdc
2R	17293389	2R_17293389_SNP [dm3] 2R_21405884_SNP [dm6]	G	A	4.684e^-5	0.886	INTRON Sdc
3R	26254722	3R_26254722_SNP [dm3] 3R_30429000_SNP [dm6]	C	T	4.702e^-5	0.886	SYNONYMOUS_CODING CG15533 UPSTREAM CG2218	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11846446	3L_11846446_SNP [dm3] 3L_11853346_SNP [dm6]	A	T	4.756e^-5	0.886	INTRON CG44837
2L	4440203	2L_4440203_SNP [dm3] 2L_4440203_SNP [dm6]	A	T	4.843e^-5	0.886	UPSTREAM CG15431 INTRON CG15431
2R	1323727	2R_1323727_SNP [dm3] 2R_5436222_SNP [dm6]	A	T	4.875e^-5	0.886	SYNONYMOUS_CODING laccase2
3L	13298701	3L_13298701_SNP [dm3] 3L_13305601_SNP [dm6]	T	C	4.911e^-5	0.886	INTERGENIC
2L	9996671	2L_9996671_SNP [dm3] 2L_9996671_SNP [dm6]	T	A	4.948e^-5	0.886	UPSTREAM CG31875 DOWNSTREAM SoYb INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16186080	3R_16186080_SNP [dm3] 3R_20360358_SNP [dm6]	G	A	4.976e^-5	0.886	NON_SYNONYMOUS_CODING MtnC DOWNSTREAM CR45023
3R	16186107	3R_16186107_SNP [dm3] 3R_20360385_SNP [dm6]	G	A	4.976e^-5	0.886	DOWNSTREAM CR45023 INTRON MtnC
3R	16186122	3R_16186122_SNP [dm3] 3R_20360400_SNP [dm6]	G	A	4.976e^-5	0.886	DOWNSTREAM CR45023 INTRON MtnC
3R	9803420	3R_9803420_SNP [dm3] 3R_13977698_SNP [dm6]	T	A	4.997e^-5	0.886	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8565989	3L_8565989_SNP [dm3] 3L_8572889_SNP [dm6]	T	C	5.036e^-5	0.886	DOWNSTREAM mir-190 INTRON rhea	TF binding site mE1_TFBS_cad
2L	4797907	2L_4797907_SNP [dm3] 2L_4797907_SNP [dm6]	A	G	5.108e^-5	0.886	INTRON Clect27
2R	17293332	2R_17293332_DEL [dm3] 2R_21405827_DEL [dm6]	TCTCGA	T	5.170e^-5	0.886	INTRON Sdc
2L	9632155	2L_9632155_SNP [dm3] 2L_9632155_SNP [dm6]	T	G	5.208e^-5	0.886	INTERGENIC
3R	6537262	3R_6537262_SNP [dm3] 3R_10711540_SNP [dm6]	T	C	5.230e^-5	0.886	UPSTREAM CG14689 INTERGENIC
3L	11846463	3L_11846463_SNP [dm3] 3L_11853363_SNP [dm6]	T	A	5.234e^-5	0.886	INTRON CG44837
3R	14229780	3R_14229780_SNP [dm3] 3R_18404058_SNP [dm6]	T	C	5.306e^-5	0.886	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17293343	2R_17293343_SNP [dm3] 2R_21405838_SNP [dm6]	T	A	5.320e^-5	0.886	INTRON Sdc
2R	12687953	2R_12687953_SNP [dm3] 2R_16800448_SNP [dm6]	A	T	5.323e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	15592053	2R_15592053_INS [dm3] 2R_19704548_INS [dm6]	C	CTCGAT	5.405e^-5	0.886	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	12134065	2R_12134065_SNP [dm3] 2R_16246560_SNP [dm6]	G	A	5.595e^-5	0.886	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_chinmo
2L	917180	2L_917180_SNP [dm3] 2L_917180_SNP [dm6]	G	A	5.601e^-5	0.886	SYNONYMOUS_CODING GluRIIC
X	9203581	X_9203581_DEL [dm3] X_9309548_DEL [dm6]	GCATGCTCAC	A	5.644e^-5	0.886	INTERGENIC
2L	7153559	2L_7153559_SNP [dm3] 2L_7153559_SNP [dm6]	T	C	5.702e^-5	0.886	INTRON Pvf3
2R	17293363	2R_17293363_SNP [dm3] 2R_21405858_SNP [dm6]	G	A	6.032e^-5	0.886	INTRON Sdc
2R	12687556	2R_12687556_SNP [dm3] 2R_16800051_SNP [dm6]	C	A	6.216e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12687353	2R_12687353_SNP [dm3] 2R_16799848_SNP [dm6]	G	C	6.276e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	12035687	3R_12035687_SNP [dm3] 3R_16209965_SNP [dm6]	T	C	6.305e^-5	0.886	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	9106568	2L_9106568_SNP [dm3] 2L_9106568_SNP [dm6]	T	C	6.326e^-5	0.886	INTERGENIC
3L	12707368	3L_12707368_INS [dm3] 3L_12714268_INS [dm6]	A	ATCATTG	6.330e^-5	0.886	INTERGENIC
2L	8844927	2L_8844927_SNP [dm3] 2L_8844927_SNP [dm6]	T	C	6.371e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	917165	2L_917165_SNP [dm3] 2L_917165_SNP [dm6]	G	A	6.428e^-5	0.886	SYNONYMOUS_CODING GluRIIC
3R	11029680	3R_11029680_SNP [dm3] 3R_15203958_SNP [dm6]	G	A	6.487e^-5	0.886	SYNONYMOUS_CODING Spn88Ea DOWNSTREAM CG42542	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10215899	2L_10215899_SNP [dm3] 2L_10215899_SNP [dm6]	G	A	6.496e^-5	0.886	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14358660	2R_14358660_SNP [dm3] 2R_18471155_SNP [dm6]	G	T	6.498e^-5	0.886	INTRON CG30116
3L	11847034	3L_11847034_SNP [dm3] 3L_11853934_SNP [dm6]	A	T	6.515e^-5	0.886	INTRON CG44837
2L	21959202	2L_21959202_SNP [dm3] 2L_21959202_SNP [dm6]	T	A	6.537e^-5	0.886	DOWNSTREAM CR44217 & 2 others INTERGENIC
3R	11001628	3R_11001628_SNP [dm3] 3R_15175906_SNP [dm6]	G	A	6.626e^-5	0.886	UTR_3_PRIME Mf DOWNSTREAM Mf INTRON Mf & 1 other
2R	1367902	2R_1367902_SNP [dm3] 2R_5480397_SNP [dm6]	C	T	6.867e^-5	0.886	INTRON CG30440	transposable element FlyBase
2L	3436568	2L_3436568_SNP [dm3] 2L_3436568_SNP [dm6]	T	C	6.877e^-5	0.886	INTERGENIC
2R	13830993	2R_13830993_SNP [dm3] 2R_17943488_SNP [dm6]	T	C	6.955e^-5	0.886	INTERGENIC
2R	12927793	2R_12927793_SNP [dm3] 2R_17040288_SNP [dm6]	A	G	6.956e^-5	0.886	INTRON RhoGEF2 EXON CR45145
3L	8274648	3L_8274648_SNP [dm3] 3L_8281548_SNP [dm6]	G	A	7.106e^-5	0.886	UTR_3_PRIME Dscam4 DOWNSTREAM Dscam4 & 1 other
X	11595452	X_11595452_DEL [dm3] X_11701419_DEL [dm6]	TAACTTATGTT...	T	7.138e^-5	0.886	INTRON PhKgamma	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11599719	3R_11599719_SNP [dm3] 3R_15773997_SNP [dm6]	G	T	7.166e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599734	3R_11599734_SNP [dm3] 3R_15774012_SNP [dm6]	A	G	7.166e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
2L	9996663	2L_9996663_SNP [dm3] 2L_9996663_SNP [dm6]	T	C	7.176e^-5	0.886	UPSTREAM CG31875 DOWNSTREAM SoYb INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	20515205	X_20515205_SNP [dm3] X_20644178_SNP [dm6]	A	C	7.188e^-5	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	20329276	2R_20329276_SNP [dm3] 2R_24441753_SNP [dm6]	T	A	7.202e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13205335	2R_13205335_SNP [dm3] 2R_17317830_SNP [dm6]	T	C	7.234e^-5	0.886	INTRON mbl
3R	22853882	3R_22853882_SNP [dm3] 3R_27028160_SNP [dm6]	A	C	7.255e^-5	0.886	NON_SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14330441	2L_14330441_SNP [dm3] 2L_14330441_SNP [dm6]	A	C	7.364e^-5	0.886	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
X	20515240	X_20515240_SNP [dm3] X_20644213_SNP [dm6]	A	T	7.452e^-5	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20515244	X_20515244_SNP [dm3] X_20644217_SNP [dm6]	T	A	7.452e^-5	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	722651	3L_722651_SNP [dm3] 3L_722651_SNP [dm6]	C	T	7.488e^-5	0.886	INTERGENIC
3R	6528192	3R_6528192_SNP [dm3] 3R_10702470_SNP [dm6]	G	C	7.649e^-5	0.886	NON_SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
3R	12509245	3R_12509245_SNP [dm3] 3R_16683523_SNP [dm6]	T	C	7.681e^-5	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11846449	3L_11846449_MNP [dm3] 3L_11853349_MNP [dm6]	ACC	GGA	7.705e^-5	0.886	INTRON CG44837
2R	12927687	2R_12927687_SNP [dm3] 2R_17040182_SNP [dm6]	A	G	7.810e^-5	0.886	DOWNSTREAM CR45145 INTRON RhoGEF2
3R	12511010	3R_12511010_SNP [dm3] 3R_16685288_SNP [dm6]	C	T	7.817e^-5	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16186140	3R_16186140_SNP [dm3] 3R_20360418_SNP [dm6]	C	T	7.854e^-5	0.886	DOWNSTREAM CR45023 INTRON MtnC
3L	6590961	3L_6590961_SNP [dm3] 3L_6597861_SNP [dm6]	C	T	7.865e^-5	0.886	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
3L	15016834	3L_15016834_SNP [dm3] 3L_15023734_SNP [dm6]	G	A	7.883e^-5	0.886	INTRON Sytbeta & 1 other
3R	19848929	3R_19848929_INS [dm3] 3R_24023207_INS [dm6]	C	CC	8.117e^-5	0.886	INTRON KrT95D
3L	11846443	3L_11846443_INS [dm3] 3L_11853343_INS [dm6]	A	AAA	8.144e^-5	0.886	INTRON CG44837
3R	12607149	3R_12607149_SNP [dm3] 3R_16781427_SNP [dm6]	C	T	8.309e^-5	0.886	INTERGENIC
2L	5210038	2L_5210038_SNP [dm3] 2L_5210038_SNP [dm6]	T	C	8.326e^-5	0.886	UPSTREAM Cyp28d1 DOWNSTREAM Cyp28d2 INTERGENIC
2R	17293347	2R_17293347_DEL [dm3] 2R_21405842_DEL [dm6]	TATATATATTTAAT...	T	8.333e^-5	0.886	INTRON Sdc
2R	12927808	2R_12927808_SNP [dm3] 2R_17040303_SNP [dm6]	C	A	8.394e^-5	0.886	INTRON RhoGEF2 EXON CR45145
X	3164894	X_3164894_DEL [dm3] X_3270861_DEL [dm6]	TT	A	8.499e^-5	0.886	INTRON dnc
3L	11847065	3L_11847065_SNP [dm3] 3L_11853965_SNP [dm6]	T	A	8.504e^-5	0.886	INTRON CG44837
2L	3411240	2L_3411240_SNP [dm3] 2L_3411240_SNP [dm6]	T	C	8.549e^-5	0.886	DOWNSTREAM CG8840 INTRON pgant2
2R	20328947	2R_20328947_SNP [dm3] 2R_24441424_SNP [dm6]	T	C	8.659e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20393188	2L_20393188_SNP [dm3] 2L_20393188_SNP [dm6]	A	C	8.708e^-5	0.886	INTRON CG10947
3L	7830971	3L_7830971_DEL [dm3] 3L_7837871_DEL [dm6]	AA	A	8.928e^-5	0.886	INTRON Pdp1	regulatory region REDfly_CRMs
3L	12707343	3L_12707343_SNP [dm3] 3L_12714243_SNP [dm6]	A	T	8.944e^-5	0.886	INTERGENIC
2R	1252996	2R_1252996_SNP [dm3] 2R_5365491_SNP [dm6]	C	A	8.946e^-5	0.886	EXON CR42646
3R	12510299	3R_12510299_SNP [dm3] 3R_16684577_SNP [dm6]	A	T	8.963e^-5	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	9880481	2R_9880481_INS [dm3] 2R_13992976_INS [dm6]	T	TATTGCATATGCATATATTG...	8.981e^-5	0.886	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	22853766	3R_22853766_SNP [dm3] 3R_27028044_SNP [dm6]	T	G	9.002e^-5	0.886	NON_SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad
2R	20294635	2R_20294635_SNP [dm3] 2R_24407112_SNP [dm6]	T	C	9.173e^-5	0.886	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
2L	9655280	2L_9655280_SNP [dm3] 2L_9655280_SNP [dm6]	A	G	9.175e^-5	0.886	SYNONYMOUS_CODING Apoltp
2R	17479091	2R_17479091_SNP [dm3] 2R_21591586_SNP [dm6]	T	C	9.225e^-5	0.886	DOWNSTREAM CG33225 INTERGENIC
3R	12525794	3R_12525794_SNP [dm3] 3R_16700072_SNP [dm6]	A	C	9.244e^-5	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5981938	3R_5981938_SNP [dm3] 3R_10156216_SNP [dm6]	C	T	9.282e^-5	0.886	INTRON Invadolysin
X	17587045	X_17587045_DEL [dm3] X_17693012_DEL [dm6]	GCGTA	G	9.349e^-5	0.886	INTRON chas
3R	26861722	3R_26861722_SNP [dm3] 3R_31036000_SNP [dm6]	C	T	9.382e^-5	0.886	SYNONYMOUS_CODING CG33773
2R	1261206	2R_1261206_SNP [dm3] 2R_5373701_SNP [dm6]	A	G	9.452e^-5	0.886	INTERGENIC	transposable element FlyBase
2R	1261307	2R_1261307_SNP [dm3] 2R_5373802_SNP [dm6]	A	T	9.452e^-5	0.886	INTERGENIC	transposable element FlyBase
2R	1261320	2R_1261320_INS [dm3] 2R_5373815_INS [dm6]	C	CCTGTT	9.452e^-5	0.886	INTERGENIC	transposable element FlyBase
2R	1261361	2R_1261361_SNP [dm3] 2R_5373856_SNP [dm6]	A	G	9.452e^-5	0.886	INTERGENIC	transposable element FlyBase
2R	12400501	2R_12400501_SNP [dm3] 2R_16512996_SNP [dm6]	C	A	9.482e^-5	0.886	INTRON Sema-2a
2L	6498446	2L_6498446_SNP [dm3] 2L_6498446_SNP [dm6]	T	A	9.502e^-5	0.886	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2R	7142779	2R_7142779_SNP [dm3] 2R_11255274_SNP [dm6]	C	T	9.620e^-5	0.886	SYNONYMOUS_CODING Cpr47Eb
3R	11599697	3R_11599697_DEL [dm3] 3R_15773975_DEL [dm6]	AA	A	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599705	3R_11599705_SNP [dm3] 3R_15773983_SNP [dm6]	G	C	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599707	3R_11599707_SNP [dm3] 3R_15773985_SNP [dm6]	G	T	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599716	3R_11599716_SNP [dm3] 3R_15773994_SNP [dm6]	C	T	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599718	3R_11599718_SNP [dm3] 3R_15773996_SNP [dm6]	T	A	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599725	3R_11599725_DEL [dm3] 3R_15774003_DEL [dm6]	TCCA	C	9.641e^-5	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	10262655	3R_10262655_SNP [dm3] 3R_14436933_SNP [dm6]	G	C	9.716e^-5	0.886	INTRON cv-c
2R	12687425	2R_12687425_SNP [dm3] 2R_16799920_SNP [dm6]	C	T	9.741e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	12947672	2L_12947672_SNP [dm3] 2L_12947672_SNP [dm6]	G	A	9.807e^-5	0.886	INTERGENIC
2L	12952178	2L_12952178_SNP [dm3] 2L_12952178_SNP [dm6]	C	T	9.938e^-5	0.886	INTERGENIC
3R	23592976	3R_23592976_SNP [dm3] 3R_27767254_SNP [dm6]	A	T	1.001e^-4	0.886	DOWNSTREAM CG34353 INTERGENIC
2R	1264121	2R_1264121_DEL [dm3] 2R_5376616_DEL [dm6]	AGGAAACATGATCAAGTTTA...	A	1.003e^-4	0.886	INTERGENIC	transposable element FlyBase
2R	15592066	2R_15592066_SNP [dm3] 2R_19704561_SNP [dm6]	G	T	1.005e^-4	0.886	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	24688578	3R_24688578_SNP [dm3] 3R_28862856_SNP [dm6]	C	T	1.024e^-4	0.886	SYNONYMOUS_CODING spg
3R	7975489	3R_7975489_SNP [dm3] 3R_12149767_SNP [dm6]	T	C	1.027e^-4	0.886	INTRON dpr15
2R	12400308	2R_12400308_SNP [dm3] 2R_16512803_SNP [dm6]	T	C	1.029e^-4	0.886	INTRON Sema-2a
2R	12687245	2R_12687245_SNP [dm3] 2R_16799740_SNP [dm6]	A	G	1.035e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12687486	2R_12687486_SNP [dm3] 2R_16799981_SNP [dm6]	G	T	1.038e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	2490761	3L_2490761_SNP [dm3] 3L_2490761_SNP [dm6]	G	C	1.042e^-4	0.886	UTR_5_PRIME CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6626567	2L_6626567_SNP [dm3] 2L_6626567_SNP [dm6]	A	T	1.049e^-4	0.886	NON_SYNONYMOUS_CODING Oatp26F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14493603	2R_14493603_SNP [dm3] 2R_18606098_SNP [dm6]	A	C	1.053e^-4	0.886	INTRON GEFmeso
2R	1254089	2R_1254089_SNP [dm3] 2R_5366584_SNP [dm6]	A	T	1.067e^-4	0.886	EXON CR42646
2R	1261252	2R_1261252_DEL [dm3] 2R_5373747_DEL [dm6]	TC	T	1.067e^-4	0.886	INTERGENIC	transposable element FlyBase
2L	6536599	2L_6536599_SNP [dm3] 2L_6536599_SNP [dm6]	C	T	1.075e^-4	0.886	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10446452	2L_10446452_SNP [dm3] 2L_10446452_SNP [dm6]	A	T	1.075e^-4	0.886	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	14358618	2R_14358618_SNP [dm3] 2R_18471113_SNP [dm6]	T	A	1.077e^-4	0.886	INTRON CG30116
2R	1264731	2R_1264731_SNP [dm3] 2R_5377226_SNP [dm6]	C	A	1.087e^-4	0.886	INTERGENIC	transposable element FlyBase
2R	20294596	2R_20294596_SNP [dm3] 2R_24407073_SNP [dm6]	A	C	1.100e^-4	0.886	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
3R	13429844	3R_13429844_SNP [dm3] 3R_17604122_SNP [dm6]	C	T	1.115e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	10446440	2L_10446440_DEL [dm3] 2L_10446440_DEL [dm6]	AAATATCTAGA...	A	1.115e^-4	0.886	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	13928322	3R_13928322_INS [dm3] 3R_18102600_INS [dm6]	T	TT	1.119e^-4	0.886	INTRON sr
3R	12509069	3R_12509069_SNP [dm3] 3R_16683347_SNP [dm6]	T	C	1.122e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2114989	2R_2114989_SNP [dm3] 2R_6227484_SNP [dm6]	T	A	1.127e^-4	0.886	DOWNSTREAM tomboy40 INTRON bin3
2R	1312854	2R_1312854_SNP [dm3] 2R_5425349_SNP [dm6]	T	C	1.130e^-4	0.886	INTRON laccase2
2R	7660259	2R_7660259_SNP [dm3] 2R_11772754_SNP [dm6]	A	G	1.136e^-4	0.886	INTRON ths
2R	12110774	2R_12110774_SNP [dm3] 2R_16223269_SNP [dm6]	A	T	1.140e^-4	0.886	UTR_3_PRIME CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
3L	12782775	3L_12782775_SNP [dm3] 3L_12789675_SNP [dm6]	T	A	1.144e^-4	0.886	UPSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	11310291	2R_11310291_SNP [dm3] 2R_15422786_SNP [dm6]	C	T	1.148e^-4	0.886	SYNONYMOUS_CODING CG43729 DOWNSTREAM CG30472
2R	1121062	2R_1121062_SNP [dm3] 2R_5233557_SNP [dm6]	C	A	1.150e^-4	0.886	INTRON Nipped-A	transposable element FlyBase
3L	14912251	3L_14912251_SNP [dm3] 3L_14919151_SNP [dm6]	G	T	1.154e^-4	0.886	INTRON DCX-EMAP
X	5394522	X_5394522_SNP [dm3] X_5500489_SNP [dm6]	T	G	1.155e^-4	0.886	SYNONYMOUS_CODING CG32762 UPSTREAM CG4151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	8327488	X_8327488_SNP [dm3] X_8433455_SNP [dm6]	C	G	1.160e^-4	0.886	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	1.187e^-4	0.886	INTERGENIC
2L	17154759	2L_17154759_SNP [dm3] 2L_17154759_SNP [dm6]	C	T	1.190e^-4	0.886	INTRON beat-IIIa & 1 other
3L	5246753	3L_5246753_SNP [dm3] 3L_5253653_SNP [dm6]	G	C	1.200e^-4	0.886	INTRON shep
3L	9996100	3L_9996100_SNP [dm3] 3L_10003000_SNP [dm6]	A	G	1.204e^-4	0.886	INTRON dpr6
2R	14321990	2R_14321990_SNP [dm3] 2R_18434485_SNP [dm6]	C	T	1.207e^-4	0.886	INTRON CG30118
3R	12532524	3R_12532524_SNP [dm3] 3R_16706802_SNP [dm6]	A	T	1.210e^-4	0.886	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9932266	3L_9932266_SNP [dm3] 3L_9939166_SNP [dm6]	G	T	1.212e^-4	0.886	INTRON CG34356
3R	12035536	3R_12035536_SNP [dm3] 3R_16209814_SNP [dm6]	C	T	1.213e^-4	0.886	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
3R	12533309	3R_12533309_SNP [dm3] 3R_16707587_SNP [dm6]	G	T	1.219e^-4	0.886	INTRON Ubx
2R	14293432	2R_14293432_SNP [dm3] 2R_18405927_SNP [dm6]	T	G	1.222e^-4	0.886	UPSTREAM GstE6 & 1 other DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
X	17770113	X_17770113_SNP [dm3] X_17876080_SNP [dm6]	C	A	1.223e^-4	0.886	INTRON mnb	TF binding site BDTNP1_TFBS_twi
2R	3601463	2R_3601463_SNP [dm3] 2R_7713958_SNP [dm6]	C	T	1.227e^-4	0.886	UPSTREAM CG1946 INTRON CG1942	TF binding site mE1_TFBS_cnc
2L	3413101	2L_3413101_SNP [dm3] 2L_3413101_SNP [dm6]	A	C	1.229e^-4	0.886	INTRON pgant2
2R	1042628	2R_1042628_SNP [dm3] 2R_5155123_SNP [dm6]	T	C	1.233e^-4	0.886	DOWNSTREAM Atf6 INTERGENIC
2R	7868176	2R_7868176_SNP [dm3] 2R_11980671_SNP [dm6]	C	T	1.235e^-4	0.886	UTR_3_PRIME CG33145 UPSTREAM CG30037
3R	9901513	3R_9901513_SNP [dm3] 3R_14075791_SNP [dm6]	T	C	1.235e^-4	0.886	INTRON foxo
3R	16186186	3R_16186186_DEL [dm3] 3R_20360464_DEL [dm6]	TTGCGCCTGTAAT...	T	1.244e^-4	0.886	CODON_DELETION MtnC DOWNSTREAM CR45023
2L	6149738	2L_6149738_SNP [dm3] 2L_6149738_SNP [dm6]	G	T	1.245e^-4	0.886	INTERGENIC
X	20515147	X_20515147_SNP [dm3] X_20644120_SNP [dm6]	C	A	1.248e^-4	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	16679306	X_16679306_SNP [dm3] X_16785273_SNP [dm6]	C	T	1.252e^-4	0.886	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3R	12035817	3R_12035817_SNP [dm3] 3R_16210095_SNP [dm6]	T	A	1.261e^-4	0.886	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3L	12707379	3L_12707379_SNP [dm3] 3L_12714279_SNP [dm6]	A	T	1.262e^-4	0.886	INTERGENIC
2R	17293320	2R_17293320_SNP [dm3] 2R_21405815_SNP [dm6]	T	G	1.272e^-4	0.886	INTRON Sdc
2R	17293322	2R_17293322_SNP [dm3] 2R_21405817_SNP [dm6]	C	T	1.272e^-4	0.886	INTRON Sdc
2R	17293326	2R_17293326_SNP [dm3] 2R_21405821_SNP [dm6]	T	A	1.272e^-4	0.886	INTRON Sdc
2R	17293327	2R_17293327_SNP [dm3] 2R_21405822_SNP [dm6]	T	G	1.272e^-4	0.886	INTRON Sdc
X	14441441	X_14441441_SNP [dm3] X_14547408_SNP [dm6]	A	T	1.277e^-4	0.886	INTERGENIC
2R	20294351	2R_20294351_SNP [dm3] 2R_24406828_SNP [dm6]	G	A	1.294e^-4	0.886	INTRON SerT	TF binding site mE1_TFBS_chinmo
2R	12687489	2R_12687489_MNP [dm3] 2R_16799984_MNP [dm6]	GCA	TAT	1.303e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12860828	3L_12860828_SNP [dm3] 3L_12867728_SNP [dm6]	G	A	1.305e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12687487	2R_12687487_SNP [dm3] 2R_16799982_SNP [dm6]	C	A	1.309e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	6538607	3R_6538607_SNP [dm3] 3R_10712885_SNP [dm6]	T	G	1.309e^-4	0.886	INTERGENIC
3R	12509179	3R_12509179_SNP [dm3] 3R_16683457_SNP [dm6]	T	A	1.310e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	26401970	3R_26401970_MNP [dm3] 3R_30576248_MNP [dm6]	TCC	ATT	1.315e^-4	0.886	UTR_3_PRIME tmod INTRON tmod
3R	26401979	3R_26401979_SNP [dm3] 3R_30576257_SNP [dm6]	T	C	1.315e^-4	0.886	UTR_3_PRIME tmod INTRON tmod
2R	1247015	2R_1247015_SNP [dm3] 2R_5359510_SNP [dm6]	C	A	1.325e^-4	0.886	DOWNSTREAM CG10417 INTERGENIC	transposable element FlyBase
2R	1262946	2R_1262946_SNP [dm3] 2R_5375441_SNP [dm6]	A	G	1.331e^-4	0.886	INTERGENIC	transposable element FlyBase
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	1.334e^-4	0.886	INTRON CG5835
3R	6527527	3R_6527527_SNP [dm3] 3R_10701805_SNP [dm6]	A	G	1.335e^-4	0.886	NON_SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_chinmo
X	16819757	X_16819757_SNP [dm3] X_16925724_SNP [dm6]	C	T	1.344e^-4	0.886	INTRON CG4928
2R	14293619	2R_14293619_SNP [dm3] 2R_18406114_SNP [dm6]	C	T	1.349e^-4	0.886	SYNONYMOUS_CODING GstE6 UPSTREAM GstE7 DOWNSTREAM GstE5	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	21208410	3L_21208410_SNP [dm3] 3L_21215310_SNP [dm6]	C	T	1.364e^-4	0.886	UTR_3_PRIME CG10508 DOWNSTREAM CG12975 INTRON CG10508
2L	14181134	2L_14181134_SNP [dm3] 2L_14181134_SNP [dm6]	A	G	1.365e^-4	0.886	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9996094	3L_9996094_SNP [dm3] 3L_10002994_SNP [dm6]	G	T	1.366e^-4	0.886	INTRON dpr6
2R	12823599	2R_12823599_SNP [dm3] 2R_16936094_SNP [dm6]	G	T	1.367e^-4	0.886	INTRON Pkc53E
3R	26401914	3R_26401914_SNP [dm3] 3R_30576192_SNP [dm6]	A	T	1.367e^-4	0.886	UTR_3_PRIME tmod INTRON tmod
3R	26401924	3R_26401924_SNP [dm3] 3R_30576202_SNP [dm6]	A	G	1.367e^-4	0.886	UTR_3_PRIME tmod INTRON tmod
X	6189213	X_6189213_SNP [dm3] X_6295180_SNP [dm6]	G	T	1.368e^-4	0.886	UTR_5_PRIME CG15891 UPSTREAM CG15892 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens
X	20515220	X_20515220_INS [dm3] X_20644193_INS [dm6]	A	AATATAT	1.372e^-4	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9090191	3L_9090191_SNP [dm3] 3L_9097091_SNP [dm6]	C	T	1.375e^-4	0.886	SYNONYMOUS_CODING CG13315 DOWNSTREAM bol
2R	9311660	2R_9311660_SNP [dm3] 2R_13424155_SNP [dm6]	G	C	1.376e^-4	0.886	UTR_5_PRIME CG42321 UPSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA
X	13645936	X_13645936_SNP [dm3] X_13751903_SNP [dm6]	C	A	1.378e^-4	0.886	UTR_5_PRIME Pdcd4	TF binding site mE1_TFBS_cad
3R	12509169	3R_12509169_SNP [dm3] 3R_16683447_SNP [dm6]	T	A	1.380e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	12509170	3R_12509170_SNP [dm3] 3R_16683448_SNP [dm6]	A	C	1.380e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	12509205	3R_12509205_SNP [dm3] 3R_16683483_SNP [dm6]	A	C	1.390e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12510330	3R_12510330_SNP [dm3] 3R_16684608_SNP [dm6]	A	C	1.396e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	2286605	3L_2286605_SNP [dm3] 3L_2286605_SNP [dm6]	C	A	1.408e^-4	0.886	INTRON MsR2
3R	16186071	3R_16186071_SNP [dm3] 3R_20360349_SNP [dm6]	G	T	1.411e^-4	0.886	NON_SYNONYMOUS_CODING MtnC DOWNSTREAM CR45023
2R	12193579	2R_12193579_SNP [dm3] 2R_16306074_SNP [dm6]	A	G	1.415e^-4	0.886	EXON CR45232
2R	12193684	2R_12193684_SNP [dm3] 2R_16306179_SNP [dm6]	C	T	1.415e^-4	0.886	EXON CR45232
2R	14493592	2R_14493592_SNP [dm3] 2R_18606087_SNP [dm6]	A	T	1.419e^-4	0.886	INTRON GEFmeso
3R	6517191	3R_6517191_SNP [dm3] 3R_10691469_SNP [dm6]	C	T	1.424e^-4	0.886	DOWNSTREAM Skeletor INTRON Skeletor	TF binding site mE1_TFBS_cad
3L	2622317	3L_2622317_SNP [dm3] 3L_2622317_SNP [dm6]	T	C	1.424e^-4	0.886	INTRON Pxn
3L	7283008	3L_7283008_SNP [dm3] 3L_7289908_SNP [dm6]	T	C	1.434e^-4	0.886	INTRON unc-13-4A
X	6607156	X_6607156_SNP [dm3] X_6713123_SNP [dm6]	T	C	1.440e^-4	0.886	NON_SYNONYMOUS_CODING CG14441
2R	10680651	2R_10680651_SNP [dm3] 2R_14793146_SNP [dm6]	G	A	1.441e^-4	0.886	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4441337	2L_4441337_SNP [dm3] 2L_4441337_SNP [dm6]	A	C	1.443e^-4	0.886	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13450676	3L_13450676_SNP [dm3] 3L_13457576_SNP [dm6]	T	C	1.443e^-4	0.886	UPSTREAM CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
2L	9492892	2L_9492892_SNP [dm3] 2L_9492892_SNP [dm6]	C	A	1.451e^-4	0.886	SYNONYMOUS_CODING Gdi	TF binding site mE1_TFBS_cad
3R	12516798	3R_12516798_SNP [dm3] 3R_16691076_SNP [dm6]	C	T	1.451e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24484998	3R_24484998_SNP [dm3] 3R_28659276_SNP [dm6]	C	T	1.471e^-4	0.886	INTERGENIC
3R	2009120	3R_2009120_SNP [dm3] 3R_6183398_SNP [dm6]	T	C	1.481e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	5239295	3L_5239295_SNP [dm3] 3L_5246195_SNP [dm6]	G	A	1.483e^-4	0.886	INTRON shep
3L	9560057	3L_9560057_SNP [dm3] 3L_9566957_SNP [dm6]	G	A	1.485e^-4	0.886	INTRON CG42673
3R	9813765	3R_9813765_SNP [dm3] 3R_13988043_SNP [dm6]	A	T	1.488e^-4	0.886	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10025297	3L_10025297_SNP [dm3] 3L_10032197_SNP [dm6]	T	G	1.501e^-4	0.886	INTRON dpr6
2L	10168981	2L_10168981_SNP [dm3] 2L_10168981_SNP [dm6]	A	T	1.511e^-4	0.886	INTRON CG44153
3R	23910901	3R_23910901_SNP [dm3] 3R_28085179_SNP [dm6]	T	C	1.517e^-4	0.886	DOWNSTREAM CG34362 INTRON CG34362
3L	8003437	3L_8003437_SNP [dm3] 3L_8010337_SNP [dm6]	A	C	1.527e^-4	0.886	INTRON nmo	TF binding site mE1_TFBS_HSA
3R	23854928	3R_23854928_SNP [dm3] 3R_28029206_SNP [dm6]	A	T	1.528e^-4	0.886	INTRON CG34362
3R	23854936	3R_23854936_DEL [dm3] 3R_28029214_DEL [dm6]	TGTTTATTTTCAATA...	T	1.528e^-4	0.886	INTRON CG34362
3R	23854996	3R_23854996_SNP [dm3] 3R_28029274_SNP [dm6]	G	A	1.528e^-4	0.886	INTRON CG34362
2R	13592513	2R_13592513_SNP [dm3] 2R_17705008_SNP [dm6]	C	T	1.532e^-4	0.886	SYNONYMOUS_CODING CG6424
3L	12102909	3L_12102909_SNP [dm3] 3L_12109809_SNP [dm6]	A	C	1.538e^-4	0.886	INTERGENIC
3R	12531579	3R_12531579_SNP [dm3] 3R_16705857_SNP [dm6]	A	C	1.541e^-4	0.886	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9996140	3L_9996140_SNP [dm3] 3L_10003040_SNP [dm6]	C	A	1.556e^-4	0.886	INTRON dpr6
3L	10025438	3L_10025438_SNP [dm3] 3L_10032338_SNP [dm6]	T	C	1.556e^-4	0.886	INTRON dpr6
3L	10025443	3L_10025443_SNP [dm3] 3L_10032343_SNP [dm6]	C	G	1.556e^-4	0.886	INTRON dpr6
3L	12299185	3L_12299185_DEL [dm3] 3L_12306085_DEL [dm6]	TA	T	1.559e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26257523	3R_26257523_SNP [dm3] 3R_30431801_SNP [dm6]	T	C	1.564e^-4	0.886	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7731957	3L_7731957_SNP [dm3] 3L_7738857_SNP [dm6]	G	A	1.570e^-4	0.886	INTRON CG32373 & 1 other
2R	17926067	2R_17926067_SNP [dm3] 2R_22038562_SNP [dm6]	A	T	1.572e^-4	0.886	INTRON CG34370
3R	9920787	3R_9920787_SNP [dm3] 3R_14095065_SNP [dm6]	C	T	1.583e^-4	0.886	INTRON CCHa1
3R	7948474	3R_7948474_SNP [dm3] 3R_12122752_SNP [dm6]	T	C	1.586e^-4	0.886	INTRON CG4702
3R	1935191	3R_1935191_SNP [dm3] 3R_6109469_SNP [dm6]	A	G	1.592e^-4	0.886	SYNONYMOUS_CODING Obp83cd DOWNSTREAM Obp83ef
2R	16679212	2R_16679212_SNP [dm3] 2R_20791707_SNP [dm6]	T	G	1.593e^-4	0.886	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	1.599e^-4	0.886	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	21477362	3R_21477362_SNP [dm3] 3R_25651640_SNP [dm6]	G	C	1.600e^-4	0.886	DOWNSTREAM mir-92b INTERGENIC
2L	17039172	2L_17039172_SNP [dm3] 2L_17039172_SNP [dm6]	A	G	1.607e^-4	0.886	INTERGENIC
3L	2500174	3L_2500174_SNP [dm3] 3L_2500174_SNP [dm6]	A	C	1.608e^-4	0.886	SYNONYMOUS_CODING CG16758 DOWNSTREAM CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2500189	3L_2500189_SNP [dm3] 3L_2500189_SNP [dm6]	C	T	1.608e^-4	0.886	SYNONYMOUS_CODING CG16758 DOWNSTREAM CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22236399	3R_22236399_SNP [dm3] 3R_26410677_SNP [dm6]	A	C	1.613e^-4	0.886	INTERGENIC
2R	12687552	2R_12687552_SNP [dm3] 2R_16800047_SNP [dm6]	G	T	1.619e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8508355	X_8508355_SNP [dm3] X_8614322_SNP [dm6]	A	G	1.622e^-4	0.886	INTERGENIC
2L	17872435	2L_17872435_SNP [dm3] 2L_17872435_SNP [dm6]	T	C	1.634e^-4	0.886	INTRON CadN2
3L	9932267	3L_9932267_SNP [dm3] 3L_9939167_SNP [dm6]	A	G	1.640e^-4	0.886	INTRON CG34356
2R	13534460	2R_13534460_SNP [dm3] 2R_17646955_SNP [dm6]	C	A	1.642e^-4	0.886	UTR_3_PRIME CCHa1-R
2L	859723	2L_859723_SNP [dm3] 2L_859723_SNP [dm6]	A	C	1.644e^-4	0.886	UPSTREAM CG13950 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18812804	3R_18812804_SNP [dm3] 3R_22987082_SNP [dm6]	A	G	1.649e^-4	0.886	SYNONYMOUS_CODING Nha2 UPSTREAM Or94a	TF binding site mE1_TFBS_cad
3L	5249530	3L_5249530_SNP [dm3] 3L_5256430_SNP [dm6]	G	A	1.650e^-4	0.886	INTRON shep
2L	9509910	2L_9509910_SNP [dm3] 2L_9509910_SNP [dm6]	T	C	1.655e^-4	0.886	INTRON CG33298
3L	11039875	3L_11039875_SNP [dm3] 3L_11046775_SNP [dm6]	A	C	1.659e^-4	0.886	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9880472	2R_9880472_INS [dm3] 2R_13992967_INS [dm6]	T	TATTGCATATAT...	1.661e^-4	0.886	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	9996191	3L_9996191_SNP [dm3] 3L_10003091_SNP [dm6]	G	A	1.663e^-4	0.886	INTRON dpr6
2L	4342278	2L_4342278_SNP [dm3] 2L_4342278_SNP [dm6]	A	T	1.674e^-4	0.886	INTRON Atet	TF binding site mE1_TFBS_HSA
2L	4440286	2L_4440286_SNP [dm3] 2L_4440286_SNP [dm6]	G	C	1.675e^-4	0.886	UPSTREAM CG15431 INTRON CG15431
2L	15467508	2L_15467508_SNP [dm3] 2L_15467508_SNP [dm6]	A	C	1.689e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13779951	2R_13779951_SNP [dm3] 2R_17892446_SNP [dm6]	G	T	1.690e^-4	0.886	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11847004	3L_11847004_SNP [dm3] 3L_11853904_SNP [dm6]	T	C	1.704e^-4	0.886	INTRON CG44837
2L	13708932	2L_13708932_SNP [dm3] 2L_13708932_SNP [dm6]	G	T	1.708e^-4	0.886	INTRON CG31814 & 1 other	TF binding site mE1_TFBS_inv
2R	12927671	2R_12927671_SNP [dm3] 2R_17040166_SNP [dm6]	A	T	1.715e^-4	0.886	DOWNSTREAM CR45145 INTRON RhoGEF2
3R	25915328	3R_25915328_SNP [dm3] 3R_30089606_SNP [dm6]	G	C	1.737e^-4	0.886	INTRON sima
3R	13417039	3R_13417039_SNP [dm3] 3R_17591317_SNP [dm6]	T	G	1.749e^-4	0.886	INTERGENIC
2R	1012470	2R_1012470_SNP [dm3] 2R_5124965_SNP [dm6]	G	T	1.754e^-4	0.886	INTRON gus	transposable element FlyBase
X	14259895	X_14259895_SNP [dm3] X_14365862_SNP [dm6]	G	A	1.757e^-4	0.886	INTRON dpr8
3L	9932259	3L_9932259_SNP [dm3] 3L_9939159_SNP [dm6]	T	G	1.762e^-4	0.886	INTRON CG34356
2R	19534754	2R_19534754_SNP [dm3] 2R_23647231_SNP [dm6]	C	T	1.773e^-4	0.886	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	1.779e^-4	0.886	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3827580	2L_3827580_SNP [dm3] 2L_3827580_SNP [dm6]	T	C	1.784e^-4	0.886	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4201609	X_4201609_SNP [dm3] X_4307576_SNP [dm6]	T	C	1.790e^-4	0.886	INTERGENIC
2L	9106554	2L_9106554_SNP [dm3] 2L_9106554_SNP [dm6]	G	A	1.798e^-4	0.886	INTERGENIC
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	1.810e^-4	0.886	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	23855018	3R_23855018_SNP [dm3] 3R_28029296_SNP [dm6]	C	G	1.810e^-4	0.886	INTRON CG34362
3L	6916636	3L_6916636_SNP [dm3] 3L_6923536_SNP [dm6]	A	G	1.818e^-4	0.886	INTERGENIC
2R	1219974	2R_1219974_SNP [dm3] 2R_5332469_SNP [dm6]	T	C	1.821e^-4	0.886	INTERGENIC	transposable element FlyBase
3R	12605413	3R_12605413_SNP [dm3] 3R_16779691_SNP [dm6]	A	T	1.823e^-4	0.886	INTERGENIC
3R	12607789	3R_12607789_DEL [dm3] 3R_16782067_DEL [dm6]	CAAGAGGTGGAGAAATGGGA...	C	1.823e^-4	0.886	INTERGENIC
3R	23849203	3R_23849203_SNP [dm3] 3R_28023481_SNP [dm6]	G	T	1.824e^-4	0.886	INTERGENIC
2R	16679139	2R_16679139_SNP [dm3] 2R_20791634_SNP [dm6]	G	A	1.824e^-4	0.886	NON_SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
2L	9643381	2L_9643381_SNP [dm3] 2L_9643381_SNP [dm6]	A	G	1.829e^-4	0.886	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
3R	2488125	3R_2488125_SNP [dm3] 3R_6662403_SNP [dm6]	G	A	1.832e^-4	0.886	INTRON lab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7689441	2L_7689441_SNP [dm3] 2L_7689441_SNP [dm6]	G	A	1.858e^-4	0.886	UTR_3_PRIME CG18585 & 1 other
3L	18156668	3L_18156668_DEL [dm3] 3L_18163568_DEL [dm6]	AATGGCTCACAA...	A	1.867e^-4	0.886	INTERGENIC
3L	5234167	3L_5234167_SNP [dm3] 3L_5241067_SNP [dm6]	A	G	1.867e^-4	0.886	INTRON shep
3R	22818258	3R_22818258_SNP [dm3] 3R_26992536_SNP [dm6]	A	G	1.871e^-4	0.886	INTERGENIC
3L	1707303	3L_1707303_SNP [dm3] 3L_1707303_SNP [dm6]	G	T	1.872e^-4	0.886	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11846898	3L_11846898_DEL [dm3] 3L_11853798_DEL [dm6]	GTG	G	1.874e^-4	0.886	INTRON CG44837
2R	1305420	2R_1305420_SNP [dm3] 2R_5417915_SNP [dm6]	G	A	1.882e^-4	0.886	INTRON laccase2
3L	1712359	3L_1712359_SNP [dm3] 3L_1712359_SNP [dm6]	T	C	1.883e^-4	0.886	SYNONYMOUS_CODING CG7991 UTR_5_PRIME CG7991	TF binding site mE1_TFBS_cad
2L	942973	2L_942973_SNP [dm3] 2L_942973_SNP [dm6]	G	T	1.885e^-4	0.886	INTRON CG4341
3R	26402043	3R_26402043_SNP [dm3] 3R_30576321_SNP [dm6]	T	G	1.887e^-4	0.886	DOWNSTREAM tmod INTRON tmod
2L	3684163	2L_3684163_SNP [dm3] 2L_3684163_SNP [dm6]	C	T	1.887e^-4	0.886	SYNONYMOUS_CODING CG34340	TF binding site mE1_TFBS_chinmo
3R	12512487	3R_12512487_SNP [dm3] 3R_16686765_SNP [dm6]	G	T	1.889e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	658756	3L_658756_SNP [dm3] 3L_658756_SNP [dm6]	G	T	1.892e^-4	0.886	DOWNSTREAM Rev1 INTERGENIC
X	12809203	X_12809203_SNP [dm3] X_12915170_SNP [dm6]	C	G	1.892e^-4	0.886	EXON CR45626
3L	11847275	3L_11847275_SNP [dm3] 3L_11854175_SNP [dm6]	T	A	1.894e^-4	0.886	INTRON CG44837
3L	1696204	3L_1696204_SNP [dm3] 3L_1696204_SNP [dm6]	G	C	1.898e^-4	0.886	SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	16541276	3R_16541276_SNP [dm3] 3R_20715554_SNP [dm6]	A	G	1.898e^-4	0.886	UPSTREAM Oamb INTERGENIC
3R	22816673	3R_22816673_SNP [dm3] 3R_26990951_SNP [dm6]	A	G	1.909e^-4	0.886	INTERGENIC
2L	3410944	2L_3410944_SNP [dm3] 2L_3410944_SNP [dm6]	C	G	1.913e^-4	0.886	SYNONYMOUS_CODING CG8840 INTRON pgant2
2L	10873512	2L_10873512_SNP [dm3] 2L_10873512_SNP [dm6]	A	T	1.919e^-4	0.886	INTERGENIC
3R	16225463	3R_16225463_SNP [dm3] 3R_20399741_SNP [dm6]	A	G	1.925e^-4	0.886	SYNONYMOUS_CODING Gfrl DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13584293	3R_13584293_SNP [dm3] 3R_17758571_SNP [dm6]	T	A	1.927e^-4	0.886	INTRON TyrR
3R	11060196	3R_11060196_SNP [dm3] 3R_15234474_SNP [dm6]	G	T	1.928e^-4	0.886	NON_SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12404939	2R_12404939_SNP [dm3] 2R_16517434_SNP [dm6]	A	G	1.931e^-4	0.886	INTRON Sema-2a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3589435	3L_3589435_SNP [dm3] 3L_3589435_SNP [dm6]	G	A	1.939e^-4	0.886	INTRON Eip63E
3L	3580499	3L_3580499_SNP [dm3] 3L_3580499_SNP [dm6]	T	C	1.945e^-4	0.886	INTRON Eip63E
3L	9889089	3L_9889089_SNP [dm3] 3L_9895989_SNP [dm6]	G	C	1.947e^-4	0.886	NON_SYNONYMOUS_CODING CG6707
2R	14293484	2R_14293484_SNP [dm3] 2R_18405979_SNP [dm6]	G	A	1.960e^-4	0.886	UPSTREAM GstE6 & 1 other DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	10776183	3L_10776183_SNP [dm3] 3L_10783083_SNP [dm6]	A	T	1.970e^-4	0.886	INTERGENIC
2L	10873515	2L_10873515_SNP [dm3] 2L_10873515_SNP [dm6]	A	T	1.972e^-4	0.886	INTERGENIC
3L	1685015	3L_1685015_SNP [dm3] 3L_1685015_SNP [dm6]	C	T	1.974e^-4	0.886	INTRON CG7991
3L	12318383	3L_12318383_SNP [dm3] 3L_12325283_SNP [dm6]	G	A	1.977e^-4	0.886	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10332948	3R_10332948_SNP [dm3] 3R_14507226_SNP [dm6]	A	G	1.983e^-4	0.886	INTRON CR44177
3L	5672148	3L_5672148_SNP [dm3] 3L_5679048_SNP [dm6]	G	C	1.991e^-4	0.886	UTR_5_PRIME sif INTRON sif
2L	4443454	2L_4443454_SNP [dm3] 2L_4443454_SNP [dm6]	C	T	1.995e^-4	0.886	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18262487	3L_18262487_SNP [dm3] 3L_18269387_SNP [dm6]	A	T	2.000e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7873541	2R_7873541_SNP [dm3] 2R_11986036_SNP [dm6]	C	T	2.001e^-4	0.886	START_GAINED CG34231 UTR_5_PRIME CG34231 UPSTREAM RnrS DOWNSTREAM rho-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12606965	3R_12606965_SNP [dm3] 3R_16781243_SNP [dm6]	G	T	2.004e^-4	0.886	INTERGENIC
3R	12606968	3R_12606968_SNP [dm3] 3R_16781246_SNP [dm6]	G	T	2.004e^-4	0.886	INTERGENIC
3L	11307976	3L_11307976_SNP [dm3] 3L_11314876_SNP [dm6]	A	G	2.004e^-4	0.886	UPSTREAM CR44361 INTERGENIC
2R	12188972	2R_12188972_SNP [dm3] 2R_16301467_SNP [dm6]	A	T	2.004e^-4	0.886	EXON CR45232	TF binding site mE1_TFBS_chinmo
3L	3142917	3L_3142917_SNP [dm3] 3L_3142917_SNP [dm6]	C	A	2.015e^-4	0.886	UTR_5_PRIME CG11537 UPSTREAM CG1291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13773361	2L_13773361_SNP [dm3] 2L_13773361_SNP [dm6]	A	T	2.020e^-4	0.886	UPSTREAM CG43376 DOWNSTREAM CG9008 INTRON TM9SF4
2L	5252329	2L_5252329_SNP [dm3] 2L_5252329_SNP [dm6]	C	T	2.025e^-4	0.886	INTRON tkv	TF binding site mE1_TFBS_chinmo
2R	319166	2R_319166_SNP [dm3] 2R_4431661_SNP [dm6]	T	C	2.032e^-4	0.886	INTRON Gprk1
3R	25851910	3R_25851910_SNP [dm3] 3R_30026188_SNP [dm6]	T	C	2.035e^-4	0.886	INTRON Axn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20515253	X_20515253_DEL [dm3] X_20644226_DEL [dm6]	TT	T	2.036e^-4	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	18812834	3R_18812834_SNP [dm3] 3R_22987112_SNP [dm6]	G	A	2.037e^-4	0.886	UPSTREAM Or94a INTRON Nha2	TF binding site mE1_TFBS_cad
3R	12627498	3R_12627498_SNP [dm3] 3R_16801776_SNP [dm6]	A	G	2.040e^-4	0.886	DOWNSTREAM CR45750 EXON CR45751	TF binding site BDTNP1_TFBS_dl
3R	13923886	3R_13923886_SNP [dm3] 3R_18098164_SNP [dm6]	T	A	2.041e^-4	0.886	INTRON sr
3R	9281152	3R_9281152_SNP [dm3] 3R_13455430_SNP [dm6]	G	T	2.046e^-4	0.886	DOWNSTREAM CR17025 INTRON CG14372
3L	1710794	3L_1710794_SNP [dm3] 3L_1710794_SNP [dm6]	T	C	2.047e^-4	0.886	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	3792182	3L_3792182_SNP [dm3] 3L_3792182_SNP [dm6]	T	C	2.048e^-4	0.886	DOWNSTREAM CG32266 INTRON CG32264
3R	6551005	3R_6551005_SNP [dm3] 3R_10725283_SNP [dm6]	G	C	2.058e^-4	0.886	INTERGENIC
3L	13101599	3L_13101599_INS [dm3] 3L_13108499_INS [dm6]	C	CC	2.063e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9827043	3R_9827043_SNP [dm3] 3R_14001321_SNP [dm6]	C	T	2.068e^-4	0.886	INTRON rdx	TF binding site mE1_TFBS_cad
3L	20078285	3L_20078285_SNP [dm3] 3L_20085185_SNP [dm6]	T	C	2.081e^-4	0.886	INTRON sNPF-R
X	18558125	X_18558125_SNP [dm3] X_18664092_SNP [dm6]	C	A	2.084e^-4	0.886	INTERGENIC
3R	6518759	3R_6518759_SNP [dm3] 3R_10693037_SNP [dm6]	C	T	2.089e^-4	0.886	SYNONYMOUS_CODING Skeletor UTR_5_PRIME Skeletor
3L	12707339	3L_12707339_SNP [dm3] 3L_12714239_SNP [dm6]	T	A	2.091e^-4	0.886	INTERGENIC
3R	11029261	3R_11029261_SNP [dm3] 3R_15203539_SNP [dm6]	T	A	2.093e^-4	0.886	DOWNSTREAM CG42542 INTRON Spn88Ea	TF binding site mE1_TFBS_cad
3L	1200588	3L_1200588_SNP [dm3] 3L_1200588_SNP [dm6]	A	T	2.098e^-4	0.886	UPSTREAM mwh INTERGENIC
3R	9812246	3R_9812246_SNP [dm3] 3R_13986524_SNP [dm6]	A	T	2.099e^-4	0.886	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	2.111e^-4	0.886	INTRON GC1
3R	3081448	3R_3081448_SNP [dm3] 3R_7255726_SNP [dm6]	C	T	2.112e^-4	0.886	INTRON Gld
2R	1311954	2R_1311954_SNP [dm3] 2R_5424449_SNP [dm6]	C	T	2.119e^-4	0.886	INTRON laccase2	transposable element FlyBase
2L	18920689	2L_18920689_DEL [dm3] 2L_18920689_DEL [dm6]	ATCCCC	A	2.121e^-4	0.886	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10950781	3L_10950781_SNP [dm3] 3L_10957681_SNP [dm6]	C	T	2.123e^-4	0.886	INTERGENIC
2R	12193719	2R_12193719_SNP [dm3] 2R_16306214_SNP [dm6]	A	G	2.127e^-4	0.886	EXON CR45232
3L	4615372	3L_4615372_DEL [dm3] 3L_4615372_DEL [dm6]	CACTTTAACCC...	C	2.128e^-4	0.886	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
X	5499422	X_5499422_INS [dm3] X_5605389_INS [dm6]	C	CCCAGGACGGAGGAC...	2.133e^-4	0.886	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12927532	2R_12927532_SNP [dm3] 2R_17040027_SNP [dm6]	G	T	2.135e^-4	0.886	DOWNSTREAM CR45145 INTRON RhoGEF2
3R	14134636	3R_14134636_SNP [dm3] 3R_18308914_SNP [dm6]	G	A	2.135e^-4	0.886	INTRON PKD
2L	9447001	2L_9447001_SNP [dm3] 2L_9447001_SNP [dm6]	T	A	2.136e^-4	0.886	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	12509119	3R_12509119_SNP [dm3] 3R_16683397_SNP [dm6]	G	C	2.137e^-4	0.886	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	20515697	2R_20515697_SNP [dm3] 2R_24628174_SNP [dm6]	T	C	2.142e^-4	0.886	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
2L	9660102	2L_9660102_SNP [dm3] 2L_9660102_SNP [dm6]	A	T	2.150e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9974291	2R_9974291_SNP [dm3] 2R_14086786_SNP [dm6]	G	T	2.167e^-4	0.886	INTRON Prosap
3R	14643457	3R_14643457_SNP [dm3] 3R_18817735_SNP [dm6]	G	A	2.170e^-4	0.886	INTRON CG18208
2L	14716505	2L_14716505_SNP [dm3] 2L_14716505_SNP [dm6]	C	G	2.171e^-4	0.886	INTERGENIC
3L	1687695	3L_1687695_SNP [dm3] 3L_1687695_SNP [dm6]	G	C	2.173e^-4	0.886	INTRON CG7991
X	8327530	X_8327530_SNP [dm3] X_8433497_SNP [dm6]	A	G	2.173e^-4	0.886	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11772921	3R_11772921_SNP [dm3] 3R_15947199_SNP [dm6]	T	A	2.183e^-4	0.886	INTRON Sap47
3L	7476704	3L_7476704_SNP [dm3] 3L_7483604_SNP [dm6]	A	C	2.183e^-4	0.886	INTERGENIC
3R	18049372	3R_18049372_SNP [dm3] 3R_22223650_SNP [dm6]	C	G	2.194e^-4	0.886	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13583915	3R_13583915_SNP [dm3] 3R_17758193_SNP [dm6]	G	A	2.197e^-4	0.886	INTRON TyrR
2L	20642399	2L_20642399_SNP [dm3] 2L_20642399_SNP [dm6]	A	G	2.200e^-4	0.886	UTR_3_PRIME CG17470 DOWNSTREAM Sfp38D & 1 other
2R	15781994	2R_15781994_SNP [dm3] 2R_19894489_SNP [dm6]	G	A	2.203e^-4	0.886	INTERGENIC
2R	19521314	2R_19521314_SNP [dm3] 2R_23633791_SNP [dm6]	G	A	2.207e^-4	0.886	INTRON retn	TF binding site mE1_TFBS_cad
3L	9940063	3L_9940063_SNP [dm3] 3L_9946963_SNP [dm6]	G	A	2.213e^-4	0.886	INTRON CG34356
X	13042166	X_13042166_SNP [dm3] X_13148133_SNP [dm6]	T	G	2.213e^-4	0.886	INTRON CG32645
3R	8154836	3R_8154836_SNP [dm3] 3R_12329114_SNP [dm6]	A	G	2.219e^-4	0.886	UPSTREAM CR45583 INTERGENIC
2R	18560750	2R_18560750_SNP [dm3] 2R_22673245_SNP [dm6]	T	C	2.221e^-4	0.886	DOWNSTREAM RYBP EXON CR44761	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	9575703	3L_9575703_SNP [dm3] 3L_9582603_SNP [dm6]	T	G	2.226e^-4	0.886	UPSTREAM CG42673 INTRON CG42673
2R	2074639	2R_2074639_INS [dm3] 2R_6187134_INS [dm6]	A	AT	2.232e^-4	0.886	DOWNSTREAM Ptr INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10220660	2L_10220660_SNP [dm3] 2L_10220660_SNP [dm6]	G	A	2.239e^-4	0.886	UTR_5_PRIME Npc1a UPSTREAM Prosalpha6 INTRON Npc1a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10026390	3L_10026390_SNP [dm3] 3L_10033290_SNP [dm6]	G	C	2.240e^-4	0.886	NON_SYNONYMOUS_CODING dpr6
2L	6774910	2L_6774910_SNP [dm3] 2L_6774910_SNP [dm6]	C	T	2.244e^-4	0.886	UPSTREAM CG17378 INTRON CG17378
2R	20077415	2R_20077415_SNP [dm3] 2R_24189892_SNP [dm6]	G	C	2.246e^-4	0.886	NON_SYNONYMOUS_CODING ocm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	13471942	2R_13471942_DEL [dm3] 2R_17584437_DEL [dm6]	GCTAGAATATGTATGC...	G	2.247e^-4	0.886	UPSTREAM CG6484 DOWNSTREAM CG14483 EXON CR45274
3R	22830731	3R_22830731_SNP [dm3] 3R_27005009_SNP [dm6]	C	T	2.250e^-4	0.886	SYNONYMOUS_CODING CG6296 DOWNSTREAM CG6295 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1710748	3L_1710748_SNP [dm3] 3L_1710748_SNP [dm6]	C	T	2.253e^-4	0.886	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	9575700	3L_9575700_SNP [dm3] 3L_9582600_SNP [dm6]	C	T	2.256e^-4	0.886	UPSTREAM CG42673 INTRON CG42673
2R	1324900	2R_1324900_INS [dm3] 2R_5437395_INS [dm6]	T	TT	2.261e^-4	0.886	INTRON laccase2	transposable element FlyBase
2L	1759063	2L_1759063_SNP [dm3] 2L_1759063_SNP [dm6]	C	A	2.261e^-4	0.886	UTR_5_PRIME CG17650
2L	6748763	2L_6748763_SNP [dm3] 2L_6748763_SNP [dm6]	A	G	2.264e^-4	0.886	UPSTREAM CG44271 INTRON CG11221
2L	9996725	2L_9996725_SNP [dm3] 2L_9996725_SNP [dm6]	A	T	2.264e^-4	0.886	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20337152	2R_20337152_SNP [dm3] 2R_24449629_SNP [dm6]	C	T	2.265e^-4	0.886	INTERGENIC
2L	5210022	2L_5210022_SNP [dm3] 2L_5210022_SNP [dm6]	C	T	2.266e^-4	0.886	UPSTREAM Cyp28d1 DOWNSTREAM Cyp28d2 INTERGENIC
2L	13709323	2L_13709323_SNP [dm3] 2L_13709323_SNP [dm6]	A	C	2.266e^-4	0.886	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814
3R	11039474	3R_11039474_SNP [dm3] 3R_15213752_SNP [dm6]	T	C	2.277e^-4	0.886	UPSTREAM CG4210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	1254652	2R_1254652_SNP [dm3] 2R_5367147_SNP [dm6]	A	G	2.277e^-4	0.886	EXON CR42646	transposable element FlyBase
X	19257107	X_19257107_SNP [dm3] X_19363074_SNP [dm6]	A	G	2.287e^-4	0.886	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14293675	2R_14293675_SNP [dm3] 2R_18406170_SNP [dm6]	A	T	2.292e^-4	0.886	SYNONYMOUS_CODING GstE6 UPSTREAM GstE7 DOWNSTREAM GstE5	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	1247657	2R_1247657_DEL [dm3] 2R_5360152_DEL [dm6]	ACTTA	A	2.293e^-4	0.886	DOWNSTREAM CG10417 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16743368	3L_16743368_SNP [dm3] 3L_16750268_SNP [dm6]	T	C	2.294e^-4	0.886	INTERGENIC
2L	7780444	2L_7780444_SNP [dm3] 2L_7780444_SNP [dm6]	T	C	2.306e^-4	0.886	SYNONYMOUS_CODING Uro
3R	6828270	3R_6828270_SNP [dm3] 3R_11002548_SNP [dm6]	G	C	2.318e^-4	0.886	INTRON CG34114
3R	9281127	3R_9281127_SNP [dm3] 3R_13455405_SNP [dm6]	C	T	2.320e^-4	0.886	DOWNSTREAM CR17025 INTRON CG14372
3R	11599687	3R_11599687_INS [dm3] 3R_15773965_INS [dm6]	A	ATGTATTTCCTA...	2.327e^-4	0.886	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	22824452	3R_22824452_SNP [dm3] 3R_26998730_SNP [dm6]	A	T	2.329e^-4	0.886	INTRON RYa-R
3L	11847294	3L_11847294_SNP [dm3] 3L_11854194_SNP [dm6]	G	A	2.339e^-4	0.886	INTRON CG44837
2R	811040	2R_811040_SNP [dm3] 2R_4923535_SNP [dm6]	T	A	2.339e^-4	0.886	INTRON Ir41a	transposable element FlyBase
2L	19634108	2L_19634108_INS [dm3] 2L_19634108_INS [dm6]	T	TATTTT	2.340e^-4	0.886	INTRON Lar
3R	13440644	3R_13440644_SNP [dm3] 3R_17614922_SNP [dm6]	A	T	2.340e^-4	0.886	UTR_3_PRIME CG14327	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn
3R	22824456	3R_22824456_SNP [dm3] 3R_26998734_SNP [dm6]	A	G	2.347e^-4	0.886	INTRON RYa-R
3L	9675806	3L_9675806_SNP [dm3] 3L_9682706_SNP [dm6]	T	C	2.348e^-4	0.886	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13584408	3R_13584408_SNP [dm3] 3R_17758686_SNP [dm6]	C	A	2.352e^-4	0.886	INTRON TyrR
3R	12349713	3R_12349713_SNP [dm3] 3R_16523991_SNP [dm6]	A	G	2.361e^-4	0.886	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	13711390	2L_13711390_SNP [dm3] 2L_13711390_SNP [dm6]	T	C	2.364e^-4	0.886	DOWNSTREAM CG7311 INTRON CG31814
3R	10046762	3R_10046762_SNP [dm3] 3R_14221040_SNP [dm6]	A	G	2.371e^-4	0.886	SYNONYMOUS_CODING CG33109 UPSTREAM CG31326
3R	12530439	3R_12530439_SNP [dm3] 3R_16704717_SNP [dm6]	C	G	2.371e^-4	0.886	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
2L	1759062	2L_1759062_SNP [dm3] 2L_1759062_SNP [dm6]	A	G	2.373e^-4	0.886	UTR_5_PRIME CG17650
3R	12512416	3R_12512416_SNP [dm3] 3R_16686694_SNP [dm6]	T	C	2.381e^-4	0.887	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12687600	2R_12687600_SNP [dm3] 2R_16800095_SNP [dm6]	G	A	2.386e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12509164	3R_12509164_SNP [dm3] 3R_16683442_SNP [dm6]	T	C	2.392e^-4	0.888	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	2429917	3L_2429917_SNP [dm3] 3L_2429917_SNP [dm6]	C	T	2.404e^-4	0.888	INTRON CG45186
2R	19620297	2R_19620297_SNP [dm3] 2R_23732774_SNP [dm6]	G	A	2.406e^-4	0.888	UTR_3_PRIME Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_zfh1
2R	1058540	2R_1058540_SNP [dm3] 2R_5171035_SNP [dm6]	G	A	2.407e^-4	0.888	INTERGENIC	transposable element FlyBase
3L	2664071	3L_2664071_SNP [dm3] 3L_2664071_SNP [dm6]	G	T	2.423e^-4	0.891	DOWNSTREAM CG33234 INTRON Fife
3R	25561717	3R_25561717_SNP [dm3] 3R_29735995_SNP [dm6]	G	T	2.430e^-4	0.891	UPSTREAM CG7598 DOWNSTREAM Kul INTRON CG7601	TF binding site mE1_TFBS_sens
2R	1309778	2R_1309778_SNP [dm3] 2R_5422273_SNP [dm6]	T	C	2.436e^-4	0.891	INTRON laccase2
2L	10446437	2L_10446437_SNP [dm3] 2L_10446437_SNP [dm6]	A	C	2.440e^-4	0.891	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	12512525	3R_12512525_DEL [dm3] 3R_16686803_DEL [dm6]	TACATAC	G	2.447e^-4	0.891	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12514053	3R_12514053_SNP [dm3] 3R_16688331_SNP [dm6]	G	C	2.447e^-4	0.891	INTRON Ubx	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	24812971	3R_24812971_SNP [dm3] 3R_28987249_SNP [dm6]	A	G	2.449e^-4	0.891	INTERGENIC
2R	7876830	2R_7876830_SNP [dm3] 2R_11989325_SNP [dm6]	C	T	2.456e^-4	0.892	SPLICE_SITE_REGION CG8298 SYNONYMOUS_CODING CG8298 UPSTREAM rho-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	9487052	2L_9487052_SNP [dm3] 2L_9487052_SNP [dm6]	C	G	2.465e^-4	0.894	INTERGENIC
3L	3726981	3L_3726981_SNP [dm3] 3L_3726981_SNP [dm6]	G	T	2.477e^-4	0.896	INTRON CG32264
X	14444679	X_14444679_SNP [dm3] X_14550646_SNP [dm6]	A	G	2.496e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8483801	3R_8483801_SNP [dm3] 3R_12658079_SNP [dm6]	A	T	2.501e^-4	0.9	INTRON CG6225	TF binding site mE1_TFBS_cad
2R	803994	2R_803994_SNP [dm3] 2R_4916489_SNP [dm6]	G	T	2.513e^-4	0.9	INTERGENIC
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	2.513e^-4	0.9	INTRON wat
3R	11533974	3R_11533974_DEL [dm3] 3R_15708252_DEL [dm6]	AA	A	2.523e^-4	0.9	UTR_3_PRIME CG5404
3L	7344880	3L_7344880_SNP [dm3] 3L_7351780_SNP [dm6]	A	G	2.528e^-4	0.9	INTRON qm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6518750	3R_6518750_SNP [dm3] 3R_10693028_SNP [dm6]	C	T	2.528e^-4	0.9	SYNONYMOUS_CODING Skeletor UTR_5_PRIME Skeletor
2L	4441707	2L_4441707_SNP [dm3] 2L_4441707_SNP [dm6]	G	C	2.530e^-4	0.9	SYNONYMOUS_CODING Sfp24F UPSTREAM CG15431 & 1 other	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Trl
2L	4407482	2L_4407482_SNP [dm3] 2L_4407482_SNP [dm6]	T	C	2.531e^-4	0.9	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6129471	3R_6129471_SNP [dm3] 3R_10303749_SNP [dm6]	T	C	2.537e^-4	0.901	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG43143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12893459	X_12893459_SNP [dm3] X_12999426_SNP [dm6]	T	C	2.555e^-4	0.903	INTRON rad
3R	16186136	3R_16186136_SNP [dm3] 3R_20360414_SNP [dm6]	T	A	2.559e^-4	0.903	DOWNSTREAM CR45023 INTRON MtnC
3L	11845777	3L_11845777_DEL [dm3] 3L_11852677_DEL [dm6]	ACGTA	A	2.566e^-4	0.903	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	9378489	2L_9378489_SNP [dm3] 2L_9378489_SNP [dm6]	A	T	2.568e^-4	0.903	INTRON Shawl
X	17586975	X_17586975_SNP [dm3] X_17692942_SNP [dm6]	G	A	2.585e^-4	0.903	INTRON chas
3R	11599691	3R_11599691_INS [dm3] 3R_15773969_INS [dm6]	G	GAATAA	2.598e^-4	0.903	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	11599693	3R_11599693_SNP [dm3] 3R_15773971_SNP [dm6]	T	A	2.598e^-4	0.903	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
X	4452832	X_4452832_SNP [dm3] X_4558799_SNP [dm6]	T	C	2.604e^-4	0.903	SYNONYMOUS_CODING CG3546 INTRON CR32773	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	2.616e^-4	0.903	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
2R	1126556	2R_1126556_SNP [dm3] 2R_5239051_SNP [dm6]	G	T	2.638e^-4	0.903	INTRON Nipped-A	transposable element FlyBase
3L	20164710	3L_20164710_SNP [dm3] 3L_20171610_SNP [dm6]	G	A	2.643e^-4	0.903	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13433579	3R_13433579_SNP [dm3] 3R_17607857_SNP [dm6]	A	T	2.648e^-4	0.903	INTRON sll
3R	16186040	3R_16186040_SNP [dm3] 3R_20360318_SNP [dm6]	A	G	2.648e^-4	0.903	UTR_5_PRIME MtnC DOWNSTREAM CR45023
3L	11847252	3L_11847252_SNP [dm3] 3L_11854152_SNP [dm6]	A	T	2.650e^-4	0.903	INTRON CG44837
3L	14660407	3L_14660407_SNP [dm3] 3L_14667307_SNP [dm6]	A	G	2.654e^-4	0.903	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20310872	2L_20310872_SNP [dm3] 2L_20310872_SNP [dm6]	A	G	2.655e^-4	0.903	UPSTREAM spir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22441095	3R_22441095_SNP [dm3] 3R_26615373_SNP [dm6]	G	T	2.666e^-4	0.903	INTERGENIC
3R	4049421	3R_4049421_SNP [dm3] 3R_8223699_SNP [dm6]	T	A	2.668e^-4	0.903	INTERGENIC
2R	18689911	2R_18689911_SNP [dm3] 2R_22802406_SNP [dm6]	T	C	2.671e^-4	0.903	DOWNSTREAM blw INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11867916	2L_11867916_SNP [dm3] 2L_11867916_SNP [dm6]	A	C	2.691e^-4	0.903	INTRON Pde1c
3R	13551974	3R_13551974_SNP [dm3] 3R_17726252_SNP [dm6]	C	T	2.694e^-4	0.903	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11060543	3R_11060543_SNP [dm3] 3R_15234821_SNP [dm6]	A	T	2.698e^-4	0.903	INTRON tefu	TF binding site BDTNP1_TFBS_da
2R	20356948	2R_20356948_SNP [dm3] 2R_24469425_SNP [dm6]	G	A	2.699e^-4	0.903	INTRON CG13579
3R	10346005	3R_10346005_SNP [dm3] 3R_14520283_SNP [dm6]	A	G	2.703e^-4	0.903	UPSTREAM Cyp313a1 INTRON Pde6
3R	13758895	3R_13758895_SNP [dm3] 3R_17933173_SNP [dm6]	A	T	2.707e^-4	0.903	INTRON cpo
2R	13863657	2R_13863657_SNP [dm3] 2R_17976152_SNP [dm6]	A	T	2.713e^-4	0.903	UTR_3_PRIME dpr13
X	4601191	X_4601191_SNP [dm3] X_4707158_SNP [dm6]	C	A	2.713e^-4	0.903	NON_SYNONYMOUS_CODING CG7024 UPSTREAM Proc-R
2R	1222308	2R_1222308_SNP [dm3] 2R_5334803_SNP [dm6]	G	A	2.714e^-4	0.903	INTERGENIC	transposable element FlyBase
3L	11306170	3L_11306170_SNP [dm3] 3L_11313070_SNP [dm6]	G	T	2.719e^-4	0.903	SYNONYMOUS_CODING CG7573	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7470137	2R_7470137_SNP [dm3] 2R_11582632_SNP [dm6]	T	A	2.723e^-4	0.903	UTR_5_PRIME tou INTRON tou	TF binding site BDTNP1_TFBS_dl
X	19260533	X_19260533_SNP [dm3] X_19366500_SNP [dm6]	G	A	2.732e^-4	0.903	INTRON kek5
3R	23194649	3R_23194649_SNP [dm3] 3R_27368927_SNP [dm6]	G	C	2.743e^-4	0.903	INTRON CG42534 EXON CR43476
3R	13433588	3R_13433588_INS [dm3] 3R_17607866_INS [dm6]	T	TT	2.747e^-4	0.903	INTRON sll
3L	4954168	3L_4954168_SNP [dm3] 3L_4954168_SNP [dm6]	C	A	2.748e^-4	0.903	INTRON Con
3R	26256595	3R_26256595_SNP [dm3] 3R_30430873_SNP [dm6]	C	A	2.756e^-4	0.903	SPLICE_SITE_REGION CG15533 INTRON CG15533	TF binding site mE1_TFBS_cad
3R	6770907	3R_6770907_SNP [dm3] 3R_10945185_SNP [dm6]	T	A	2.760e^-4	0.903	INTERGENIC
2L	2173318	2L_2173318_SNP [dm3] 2L_2173318_SNP [dm6]	A	C	2.761e^-4	0.903	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_disco
3R	9281288	3R_9281288_SNP [dm3] 3R_13455566_SNP [dm6]	T	A	2.766e^-4	0.903	INTRON CG14372 EXON CR17025
2R	2131643	2R_2131643_SNP [dm3] 2R_6244138_SNP [dm6]	T	C	2.767e^-4	0.903	INTRON Pld	transposable element FlyBase
3R	26257459	3R_26257459_SNP [dm3] 3R_30431737_SNP [dm6]	G	T	2.767e^-4	0.903	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26257474	3R_26257474_SNP [dm3] 3R_30431752_SNP [dm6]	T	C	2.767e^-4	0.903	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22548787	3L_22548787_SNP [dm3] 3L_22555687_SNP [dm6]	G	A	2.768e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	22548856	3L_22548856_SNP [dm3] 3L_22555756_SNP [dm6]	G	A	2.768e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14575606	2R_14575606_SNP [dm3] 2R_18688101_SNP [dm6]	C	G	2.775e^-4	0.903	UTR_3_PRIME CG42855 UPSTREAM Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	11599713	3R_11599713_SNP [dm3] 3R_15773991_SNP [dm6]	T	A	2.776e^-4	0.903	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
X	8571752	X_8571752_SNP [dm3] X_8677719_SNP [dm6]	A	T	2.780e^-4	0.903	INTRON CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	21174554	X_21174554_SNP [dm3] X_21303527_SNP [dm6]	T	C	2.790e^-4	0.903	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2R	1219961	2R_1219961_SNP [dm3] 2R_5332456_SNP [dm6]	T	G	2.792e^-4	0.903	INTERGENIC	transposable element FlyBase
2R	1220034	2R_1220034_SNP [dm3] 2R_5332529_SNP [dm6]	T	A	2.792e^-4	0.903	INTERGENIC	transposable element FlyBase
3R	11039880	3R_11039880_SNP [dm3] 3R_15214158_SNP [dm6]	A	T	2.797e^-4	0.903	UPSTREAM CG6654 DOWNSTREAM SIDL INTRON CG4210	TF binding site BDTNP1_TFBS_Med
2R	3259706	2R_3259706_SNP [dm3] 2R_7372201_SNP [dm6]	G	T	2.805e^-4	0.903	INTRON Dscam1	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
3R	1969535	3R_1969535_SNP [dm3] 3R_6143813_SNP [dm6]	C	T	2.808e^-4	0.903	INTERGENIC
2R	1326864	2R_1326864_SNP [dm3] 2R_5439359_SNP [dm6]	A	G	2.809e^-4	0.903	INTRON laccase2
2L	6070732	2L_6070732_SNP [dm3] 2L_6070732_SNP [dm6]	A	C	2.815e^-4	0.903	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	20310887	2L_20310887_SNP [dm3] 2L_20310887_SNP [dm6]	A	T	2.816e^-4	0.903	UPSTREAM spir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3185696	2L_3185696_SNP [dm3] 2L_3185696_SNP [dm6]	T	G	2.817e^-4	0.903	INTRON CG34393
3R	12532085	3R_12532085_SNP [dm3] 3R_16706363_SNP [dm6]	C	A	2.820e^-4	0.903	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4201803	X_4201803_SNP [dm3] X_4307770_SNP [dm6]	T	C	2.822e^-4	0.903	INTERGENIC
3R	11205428	3R_11205428_SNP [dm3] 3R_15379706_SNP [dm6]	C	T	2.841e^-4	0.905	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16186035	3R_16186035_SNP [dm3] 3R_20360313_SNP [dm6]	C	A	2.847e^-4	0.905	UTR_5_PRIME MtnC DOWNSTREAM CR45023
2L	16956377	2L_16956377_SNP [dm3] 2L_16956377_SNP [dm6]	T	A	2.847e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6537388	3R_6537388_SNP [dm3] 3R_10711666_SNP [dm6]	G	A	2.850e^-4	0.905	UPSTREAM CG14689 INTERGENIC
2R	14184447	2R_14184447_SNP [dm3] 2R_18296942_SNP [dm6]	G	A	2.864e^-4	0.905	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3R	13551931	3R_13551931_SNP [dm3] 3R_17726209_SNP [dm6]	T	A	2.866e^-4	0.905	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	718775	3L_718775_SNP [dm3] 3L_718775_SNP [dm6]	A	T	2.871e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13056081	2R_13056081_SNP [dm3] 2R_17168576_SNP [dm6]	A	T	2.879e^-4	0.905	INTERGENIC
3L	16162959	3L_16162959_SNP [dm3] 3L_16169859_SNP [dm6]	G	A	2.888e^-4	0.905	SYNONYMOUS_CODING CG33796 DOWNSTREAM CG33795
2L	9035291	2L_9035291_DEL [dm3] 2L_9035291_DEL [dm6]	AGTAA	A	2.892e^-4	0.905	INTERGENIC
2L	6498356	2L_6498356_SNP [dm3] 2L_6498356_SNP [dm6]	T	C	2.893e^-4	0.905	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	16721354	2L_16721354_SNP [dm3] 2L_16721354_SNP [dm6]	C	T	2.893e^-4	0.905	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3934443	2L_3934443_SNP [dm3] 2L_3934443_SNP [dm6]	T	C	2.898e^-4	0.905	INTRON fred
2L	9643258	2L_9643258_SNP [dm3] 2L_9643258_SNP [dm6]	A	G	2.903e^-4	0.905	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
3L	10614191	3L_10614191_SNP [dm3] 3L_10621091_SNP [dm6]	G	A	2.918e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12394545	2R_12394545_SNP [dm3] 2R_16507040_SNP [dm6]	A	G	2.927e^-4	0.905	INTRON Sema-2a
3R	14773850	3R_14773850_SNP [dm3] 3R_18948128_SNP [dm6]	A	G	2.928e^-4	0.905	INTRON CG42613
3R	14229879	3R_14229879_SNP [dm3] 3R_18404157_SNP [dm6]	C	A	2.929e^-4	0.905	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14230035	3R_14230035_SNP [dm3] 3R_18404313_SNP [dm6]	A	C	2.929e^-4	0.905	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7985499	3R_7985499_SNP [dm3] 3R_12159777_SNP [dm6]	A	G	2.931e^-4	0.905	INTERGENIC
3R	11027960	3R_11027960_SNP [dm3] 3R_15202238_SNP [dm6]	T	G	2.934e^-4	0.905	DOWNSTREAM Spn88Ea INTRON CG42542
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	2.946e^-4	0.905	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	7937707	3R_7937707_SNP [dm3] 3R_12111985_SNP [dm6]	C	A	2.952e^-4	0.905	DOWNSTREAM dpr17 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1714372	3L_1714372_SNP [dm3] 3L_1714372_SNP [dm6]	G	A	2.956e^-4	0.905	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1402359	2R_1402359_SNP [dm3] 2R_5514854_SNP [dm6]	G	A	2.959e^-4	0.905	INTRON CG30438
3R	12512533	3R_12512533_SNP [dm3] 3R_16686811_SNP [dm6]	G	A	2.962e^-4	0.905	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20355331	2R_20355331_SNP [dm3] 2R_24467808_SNP [dm6]	C	A	2.964e^-4	0.905	INTRON CG13579
2L	6029304	2L_6029304_SNP [dm3] 2L_6029304_SNP [dm6]	T	G	2.972e^-4	0.905	INTRON CG9109
2R	20139019	2R_20139019_SNP [dm3] 2R_24251496_SNP [dm6]	A	G	2.974e^-4	0.905	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	22828843	3R_22828843_SNP [dm3] 3R_27003121_SNP [dm6]	C	G	2.986e^-4	0.905	DOWNSTREAM CG6296 & 1 other INTRON RYa-R
2R	12688046	2R_12688046_SNP [dm3] 2R_16800541_SNP [dm6]	G	T	2.986e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	11037113	3R_11037113_SNP [dm3] 3R_15211391_SNP [dm6]	A	T	2.988e^-4	0.905	UTR_3_PRIME CG6654 DOWNSTREAM CG4203	TF binding site mE1_TFBS_cad
2L	12918813	2L_12918813_SNP [dm3] 2L_12918813_SNP [dm6]	C	A	2.989e^-4	0.905	INTRON ACXB
2R	7868170	2R_7868170_SNP [dm3] 2R_11980665_SNP [dm6]	A	G	3.013e^-4	0.911	UTR_3_PRIME CG33145 UPSTREAM CG30037
3L	11846541	3L_11846541_SNP [dm3] 3L_11853441_SNP [dm6]	A	G	3.025e^-4	0.911	INTRON CG44837
2R	1252676	2R_1252676_DEL [dm3] 2R_5365171_DEL [dm6]	CAGAAATC	C	3.036e^-4	0.911	EXON CR42646
3R	3101018	3R_3101018_SNP [dm3] 3R_7275296_SNP [dm6]	C	G	3.041e^-4	0.911	NON_SYNONYMOUS_CODING rn	TF binding site mE1_TFBS_chinmo
2L	13773343	2L_13773343_SNP [dm3] 2L_13773343_SNP [dm6]	G	T	3.053e^-4	0.911	UPSTREAM CG43376 DOWNSTREAM CG9008 INTRON TM9SF4
3R	12059712	3R_12059712_SNP [dm3] 3R_16233990_SNP [dm6]	A	T	3.054e^-4	0.911	INTRON tara
3R	6124704	3R_6124704_SNP [dm3] 3R_10298982_SNP [dm6]	T	C	3.057e^-4	0.911	INTRON CG43143
3R	7813950	3R_7813950_SNP [dm3] 3R_11988228_SNP [dm6]	T	A	3.059e^-4	0.911	INTRON mfas
2L	10086396	2L_10086396_SNP [dm3] 2L_10086396_SNP [dm6]	A	T	3.060e^-4	0.911	INTRON CG44153
X	6477114	X_6477114_SNP [dm3] X_6583081_SNP [dm6]	C	T	3.061e^-4	0.911	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	3580501	3L_3580501_SNP [dm3] 3L_3580501_SNP [dm6]	T	C	3.069e^-4	0.911	INTRON Eip63E
2L	1760766	2L_1760766_SNP [dm3] 2L_1760766_SNP [dm6]	T	G	3.078e^-4	0.911	INTERGENIC
2L	4823348	2L_4823348_SNP [dm3] 2L_4823348_SNP [dm6]	G	C	3.080e^-4	0.911	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11204501	3R_11204501_DEL [dm3] 3R_15378779_DEL [dm6]	CCTTTAAGA	C	3.084e^-4	0.911	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17587004	X_17587004_SNP [dm3] X_17692971_SNP [dm6]	T	C	3.084e^-4	0.911	INTRON chas
3L	8563826	3L_8563826_SNP [dm3] 3L_8570726_SNP [dm6]	A	G	3.093e^-4	0.911	UTR_3_PRIME rhea DOWNSTREAM CR43910 INTRON rhea
2R	9879120	2R_9879120_SNP [dm3] 2R_13991615_SNP [dm6]	G	A	3.094e^-4	0.911	UPSTREAM RN-tre INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7028466	2L_7028466_SNP [dm3] 2L_7028466_SNP [dm6]	T	A	3.095e^-4	0.911	INTRON CG3476
3L	14915718	3L_14915718_SNP [dm3] 3L_14922618_SNP [dm6]	G	A	3.102e^-4	0.911	INTRON DCX-EMAP
3L	567371	3L_567371_SNP [dm3] 3L_567371_SNP [dm6]	A	G	3.120e^-4	0.915	INTRON hipk
3L	17981326	3L_17981326_SNP [dm3] 3L_17988226_SNP [dm6]	C	T	3.133e^-4	0.916	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13890368	3R_13890368_SNP [dm3] 3R_18064646_SNP [dm6]	C	T	3.138e^-4	0.916	INTERGENIC
2L	9748012	2L_9748012_SNP [dm3] 2L_9748012_SNP [dm6]	C	T	3.138e^-4	0.916	SYNONYMOUS_STOP Cyp4e3
3R	17892901	3R_17892901_SNP [dm3] 3R_22067179_SNP [dm6]	T	G	3.142e^-4	0.916	INTRON how
3R	3164501	3R_3164501_SNP [dm3] 3R_7338779_SNP [dm6]	G	T	3.156e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13472439	2R_13472439_SNP [dm3] 2R_17584934_SNP [dm6]	G	T	3.166e^-4	0.916	UPSTREAM CG6484 & 1 other DOWNSTREAM CG14483 & 1 other INTERGENIC
2R	12224496	2R_12224496_SNP [dm3] 2R_16336991_SNP [dm6]	T	A	3.173e^-4	0.916	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12687601	2R_12687601_SNP [dm3] 2R_16800096_SNP [dm6]	C	T	3.187e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11044447	3R_11044447_SNP [dm3] 3R_15218725_SNP [dm6]	T	C	3.192e^-4	0.916	UPSTREAM CG12241 INTRON SIDL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044671	3R_11044671_SNP [dm3] 3R_15218949_SNP [dm6]	T	C	3.192e^-4	0.916	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	962039	2R_962039_SNP [dm3] 2R_5074534_SNP [dm6]	A	T	3.195e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11041191	3R_11041191_SNP [dm3] 3R_15215469_SNP [dm6]	T	C	3.196e^-4	0.916	SYNONYMOUS_CODING SIDL DOWNSTREAM CG4210	TF binding site mE1_TFBS_cad
3L	14911231	3L_14911231_SNP [dm3] 3L_14918131_SNP [dm6]	G	A	3.199e^-4	0.916	INTRON DCX-EMAP
2R	15823170	2R_15823170_SNP [dm3] 2R_19935665_SNP [dm6]	A	T	3.210e^-4	0.916	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9632147	2L_9632147_SNP [dm3] 2L_9632147_SNP [dm6]	G	T	3.210e^-4	0.916	INTERGENIC
3L	658750	3L_658750_DEL [dm3] 3L_658750_DEL [dm6]	GTT	G	3.219e^-4	0.916	DOWNSTREAM Rev1 INTERGENIC
3R	13168415	3R_13168415_SNP [dm3] 3R_17342693_SNP [dm6]	G	A	3.223e^-4	0.916	INTRON beat-IIa
X	17586909	X_17586909_INS [dm3] X_17692876_INS [dm6]	A	AAATACAATAAATGCGACTT...	3.229e^-4	0.916	INTRON chas
2L	6774431	2L_6774431_DEL [dm3] 2L_6774431_DEL [dm6]	TCAAAA	T	3.240e^-4	0.916	UTR_5_PRIME CG17378
3R	22819927	3R_22819927_SNP [dm3] 3R_26994205_SNP [dm6]	A	T	3.245e^-4	0.916	UPSTREAM TwdlC INTERGENIC
3R	11539917	3R_11539917_DEL [dm3] 3R_15714195_DEL [dm6]	GCGTTGAGTTG...	G	3.250e^-4	0.916	INTERGENIC
3R	11038301	3R_11038301_SNP [dm3] 3R_15212579_SNP [dm6]	C	G	3.261e^-4	0.916	SYNONYMOUS_CODING CG6654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18651706	2L_18651706_SNP [dm3] 2L_18651706_SNP [dm6]	G	A	3.266e^-4	0.916	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	767016	2R_767016_SNP [dm3] 2R_4879511_SNP [dm6]	C	A	3.282e^-4	0.916	INTERGENIC
2L	12908992	2L_12908992_SNP [dm3] 2L_12908992_SNP [dm6]	C	T	3.282e^-4	0.916	INTERGENIC
3R	14903176	3R_14903176_SNP [dm3] 3R_19077454_SNP [dm6]	T	G	3.293e^-4	0.916	INTRON cdi
2R	394113	2R_394113_SNP [dm3] 2R_4506608_SNP [dm6]	A	G	3.296e^-4	0.916	INTERGENIC	transposable element FlyBase
3L	12312337	3L_12312337_SNP [dm3] 3L_12319237_SNP [dm6]	C	T	3.298e^-4	0.916	INTERGENIC
3R	22824879	3R_22824879_SNP [dm3] 3R_26999157_SNP [dm6]	C	T	3.299e^-4	0.916	UPSTREAM CG31077 INTRON RYa-R
2R	14293440	2R_14293440_SNP [dm3] 2R_18405935_SNP [dm6]	A	G	3.306e^-4	0.916	UPSTREAM GstE6 & 1 other DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	6590793	3L_6590793_SNP [dm3] 3L_6597693_SNP [dm6]	A	C	3.307e^-4	0.916	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11022088	3R_11022088_SNP [dm3] 3R_15196366_SNP [dm6]	A	T	3.307e^-4	0.916	UPSTREAM CG42542 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	20355656	2R_20355656_SNP [dm3] 2R_24468133_SNP [dm6]	A	G	3.314e^-4	0.916	INTRON CG13579
2R	15592020	2R_15592020_SNP [dm3] 2R_19704515_SNP [dm6]	C	T	3.318e^-4	0.916	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
X	14495995	X_14495995_SNP [dm3] X_14601962_SNP [dm6]	C	T	3.324e^-4	0.916	INTRON CG9413	TF binding site BDTNP1_TFBS_dl
3R	26419937	3R_26419937_SNP [dm3] 3R_30594215_SNP [dm6]	C	T	3.332e^-4	0.916	INTRON CG2246
3R	7800188	3R_7800188_SNP [dm3] 3R_11974466_SNP [dm6]	C	T	3.332e^-4	0.916	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	6525237	3R_6525237_SNP [dm3] 3R_10699515_SNP [dm6]	C	T	3.334e^-4	0.916	UPSTREAM pug DOWNSTREAM CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1264251	2R_1264251_SNP [dm3] 2R_5376746_SNP [dm6]	C	A	3.334e^-4	0.916	INTERGENIC	transposable element FlyBase
3L	3982420	3L_3982420_SNP [dm3] 3L_3982420_SNP [dm6]	C	T	3.338e^-4	0.916	INTERGENIC	regulatory region REDfly_CRMs
2R	1316325	2R_1316325_SNP [dm3] 2R_5428820_SNP [dm6]	A	G	3.341e^-4	0.916	INTRON laccase2	transposable element FlyBase
2R	11310190	2R_11310190_SNP [dm3] 2R_15422685_SNP [dm6]	A	T	3.344e^-4	0.916	DOWNSTREAM CG30472 INTRON CG43729
3R	22816686	3R_22816686_SNP [dm3] 3R_26990964_SNP [dm6]	A	G	3.345e^-4	0.916	INTERGENIC
2L	9662486	2L_9662486_SNP [dm3] 2L_9662486_SNP [dm6]	G	A	3.350e^-4	0.916	INTERGENIC
2L	4440228	2L_4440228_SNP [dm3] 2L_4440228_SNP [dm6]	C	T	3.364e^-4	0.916	UPSTREAM CG15431 INTRON CG15431
2L	4440252	2L_4440252_SNP [dm3] 2L_4440252_SNP [dm6]	T	C	3.364e^-4	0.916	UPSTREAM CG15431 INTRON CG15431
2R	9266134	2R_9266134_SNP [dm3] 2R_13378629_SNP [dm6]	A	G	3.365e^-4	0.916	UPSTREAM CG10814 INTERGENIC
3R	20262638	3R_20262638_SNP [dm3] 3R_24436916_SNP [dm6]	A	C	3.369e^-4	0.916	INTRON nAChRalpha1
3R	6537190	3R_6537190_SNP [dm3] 3R_10711468_SNP [dm6]	G	C	3.375e^-4	0.916	UPSTREAM CG14689 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13537341	3R_13537341_SNP [dm3] 3R_17711619_SNP [dm6]	T	A	3.380e^-4	0.916	INTRON osa	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	21959221	2L_21959221_SNP [dm3] 2L_21959221_SNP [dm6]	G	A	3.391e^-4	0.916	DOWNSTREAM CR44217 & 2 others INTERGENIC
2R	15823145	2R_15823145_SNP [dm3] 2R_19935640_SNP [dm6]	A	C	3.395e^-4	0.916	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9022671	2L_9022671_SNP [dm3] 2L_9022671_SNP [dm6]	C	T	3.395e^-4	0.916	INTERGENIC
2L	7741948	2L_7741948_SNP [dm3] 2L_7741948_SNP [dm6]	T	A	3.408e^-4	0.916	UPSTREAM Acp1 INTERGENIC
2R	17926069	2R_17926069_SNP [dm3] 2R_22038564_SNP [dm6]	A	G	3.431e^-4	0.916	INTRON CG34370
2L	18137371	2L_18137371_SNP [dm3] 2L_18137371_SNP [dm6]	T	G	3.433e^-4	0.916	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18137376	2L_18137376_SNP [dm3] 2L_18137376_SNP [dm6]	T	C	3.433e^-4	0.916	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16746636	3L_16746636_SNP [dm3] 3L_16753536_SNP [dm6]	C	G	3.436e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13709317	2L_13709317_SNP [dm3] 2L_13709317_SNP [dm6]	C	G	3.439e^-4	0.916	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814
2R	12046515	2R_12046515_SNP [dm3] 2R_16159010_SNP [dm6]	C	A	3.439e^-4	0.916	UPSTREAM CG10734 INTRON lbk
3L	1709706	3L_1709706_SNP [dm3] 3L_1709706_SNP [dm6]	T	A	3.441e^-4	0.916	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	1224660	2R_1224660_SNP [dm3] 2R_5337155_SNP [dm6]	C	T	3.452e^-4	0.916	INTERGENIC	transposable element FlyBase
2L	6498347	2L_6498347_SNP [dm3] 2L_6498347_SNP [dm6]	G	A	3.456e^-4	0.916	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3R	12035667	3R_12035667_INS [dm3] 3R_16209945_INS [dm6]	A	AAAGTGCACA	3.466e^-4	0.916	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	19546539	2R_19546539_SNP [dm3] 2R_23659016_SNP [dm6]	C	T	3.467e^-4	0.916	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18698380	2R_18698380_SNP [dm3] 2R_22810875_SNP [dm6]	T	G	3.468e^-4	0.916	INTRON stl
2R	12397128	2R_12397128_DEL [dm3] 2R_16509623_DEL [dm6]	TCT	T	3.470e^-4	0.916	INTRON Sema-2a
3R	11011843	3R_11011843_SNP [dm3] 3R_15186121_SNP [dm6]	G	A	3.484e^-4	0.916	SYNONYMOUS_CODING Gyc88E
2R	1263401	2R_1263401_SNP [dm3] 2R_5375896_SNP [dm6]	A	G	3.485e^-4	0.916	INTERGENIC	transposable element FlyBase
3R	22824896	3R_22824896_SNP [dm3] 3R_26999174_SNP [dm6]	G	C	3.487e^-4	0.916	UPSTREAM CG31077 INTRON RYa-R
3R	11061659	3R_11061659_SNP [dm3] 3R_15235937_SNP [dm6]	T	A	3.490e^-4	0.916	NON_SYNONYMOUS_CODING tefu
3R	10638066	3R_10638066_SNP [dm3] 3R_14812344_SNP [dm6]	G	T	3.501e^-4	0.916	UPSTREAM btsz INTRON btsz
3R	12609907	3R_12609907_SNP [dm3] 3R_16784185_SNP [dm6]	C	A	3.502e^-4	0.916	EXON CR44945	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3491306	2L_3491306_SNP [dm3] 2L_3491306_SNP [dm6]	G	C	3.505e^-4	0.916	UPSTREAM CG15414 INTERGENIC
2L	5635156	2L_5635156_SNP [dm3] 2L_5635156_SNP [dm6]	C	T	3.510e^-4	0.916	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
3R	11061072	3R_11061072_SNP [dm3] 3R_15235350_SNP [dm6]	T	A	3.523e^-4	0.916	NON_SYNONYMOUS_CODING tefu
2R	13212237	2R_13212237_SNP [dm3] 2R_17324732_SNP [dm6]	A	G	3.524e^-4	0.916	INTRON mbl
2R	16555871	2R_16555871_SNP [dm3] 2R_20668366_SNP [dm6]	T	C	3.531e^-4	0.916	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	9279391	3R_9279391_SNP [dm3] 3R_13453669_SNP [dm6]	A	G	3.532e^-4	0.916	INTRON CG14372	TF binding site mE1_TFBS_inv
2L	17154788	2L_17154788_SNP [dm3] 2L_17154788_SNP [dm6]	C	A	3.542e^-4	0.916	INTRON beat-IIIa & 1 other
3R	12509066	3R_12509066_SNP [dm3] 3R_16683344_SNP [dm6]	A	T	3.546e^-4	0.916	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13582479	3R_13582479_SNP [dm3] 3R_17756757_SNP [dm6]	C	T	3.548e^-4	0.916	INTRON TyrR	TF binding site mE1_TFBS_chinmo
3R	13582492	3R_13582492_SNP [dm3] 3R_17756770_SNP [dm6]	T	G	3.548e^-4	0.916	INTRON TyrR	TF binding site mE1_TFBS_chinmo
3R	13582529	3R_13582529_SNP [dm3] 3R_17756807_SNP [dm6]	T	C	3.548e^-4	0.916	INTRON TyrR	TF binding site mE1_TFBS_chinmo
3R	13582533	3R_13582533_SNP [dm3] 3R_17756811_SNP [dm6]	A	T	3.548e^-4	0.916	INTRON TyrR	TF binding site mE1_TFBS_chinmo
2L	2719678	2L_2719678_SNP [dm3] 2L_2719678_SNP [dm6]	A	G	3.548e^-4	0.916	DOWNSTREAM CG31690 INTERGENIC
3L	15594264	3L_15594264_SNP [dm3] 3L_15601164_SNP [dm6]	G	T	3.551e^-4	0.916	INTRON RhoGAP71E
3R	22816542	3R_22816542_SNP [dm3] 3R_26990820_SNP [dm6]	A	G	3.562e^-4	0.916	UPSTREAM CG31076 INTERGENIC
3R	6517185	3R_6517185_SNP [dm3] 3R_10691463_SNP [dm6]	T	G	3.566e^-4	0.916	DOWNSTREAM Skeletor INTRON Skeletor	TF binding site mE1_TFBS_cad
2L	9486933	2L_9486933_SNP [dm3] 2L_9486933_SNP [dm6]	C	A	3.569e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22830407	3R_22830407_SNP [dm3] 3R_27004685_SNP [dm6]	G	A	3.581e^-4	0.916	SYNONYMOUS_CODING CG6296 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14575545	2R_14575545_SNP [dm3] 2R_18688040_SNP [dm6]	T	C	3.582e^-4	0.916	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13273650	2R_13273650_SNP [dm3] 2R_17386145_SNP [dm6]	A	G	3.586e^-4	0.916	DOWNSTREAM CR44344 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5559444	3R_5559444_SNP [dm3] 3R_9733722_SNP [dm6]	G	A	3.590e^-4	0.916	UPSTREAM alphaTub85E DOWNSTREAM CG12950 INTERGENIC
3R	9901441	3R_9901441_SNP [dm3] 3R_14075719_SNP [dm6]	G	A	3.595e^-4	0.916	INTRON foxo
2R	12696313	2R_12696313_SNP [dm3] 2R_16808808_SNP [dm6]	G	T	3.598e^-4	0.916	INTERGENIC
3L	10775721	3L_10775721_SNP [dm3] 3L_10782621_SNP [dm6]	G	A	3.609e^-4	0.916	INTERGENIC
X	3415248	X_3415248_SNP [dm3] X_3521215_SNP [dm6]	G	T	3.613e^-4	0.916	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9908324	X_9908324_SNP [dm3] X_10014291_SNP [dm6]	T	A	3.615e^-4	0.916	DOWNSTREAM CG2990 INTERGENIC
3L	4803380	3L_4803380_SNP [dm3] 3L_4803380_SNP [dm6]	T	C	3.619e^-4	0.916	SYNONYMOUS_CODING CG7509 DOWNSTREAM CR44528
2R	8870097	2R_8870097_SNP [dm3] 2R_12982592_SNP [dm6]	A	C	3.621e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13448581	3R_13448581_SNP [dm3] 3R_17622859_SNP [dm6]	G	C	3.621e^-4	0.916	UPSTREAM CG14323 DOWNSTREAM tRNA:CR33534 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	11204516	3R_11204516_SNP [dm3] 3R_15378794_SNP [dm6]	T	G	3.630e^-4	0.917	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9279429	3R_9279429_SNP [dm3] 3R_13453707_SNP [dm6]	T	C	3.636e^-4	0.917	INTRON CG14372	TF binding site mE1_TFBS_inv
3R	19098884	3R_19098884_SNP [dm3] 3R_23273162_SNP [dm6]	C	A	3.647e^-4	0.917	INTRON orb
3L	7742583	3L_7742583_SNP [dm3] 3L_7749483_SNP [dm6]	C	A	3.655e^-4	0.917	UTR_3_PRIME CG13685 INTRON CG32373
2L	9654011	2L_9654011_SNP [dm3] 2L_9654011_SNP [dm6]	A	G	3.655e^-4	0.917	INTRON Apoltp
2L	9654015	2L_9654015_SNP [dm3] 2L_9654015_SNP [dm6]	T	A	3.655e^-4	0.917	INTRON Apoltp
3R	14620899	3R_14620899_SNP [dm3] 3R_18795177_SNP [dm6]	T	A	3.676e^-4	0.921	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9429672	2L_9429672_SNP [dm3] 2L_9429672_SNP [dm6]	A	G	3.688e^-4	0.922	UTR_5_PRIME FucTB DOWNSTREAM CG42847 INTRON FucTB
3R	2464630	3R_2464630_SNP [dm3] 3R_6638908_SNP [dm6]	C	A	3.690e^-4	0.922	INTERGENIC
3L	5120300	3L_5120300_DEL [dm3] 3L_5127200_DEL [dm6]	GCAA	G	3.698e^-4	0.922	INTERGENIC
3L	7476728	3L_7476728_SNP [dm3] 3L_7483628_SNP [dm6]	T	C	3.702e^-4	0.922	INTERGENIC
2R	12397142	2R_12397142_SNP [dm3] 2R_16509637_SNP [dm6]	G	A	3.703e^-4	0.922	INTRON Sema-2a
3L	3792196	3L_3792196_SNP [dm3] 3L_3792196_SNP [dm6]	T	A	3.715e^-4	0.922	DOWNSTREAM CG32266 INTRON CG32264
2R	1349125	2R_1349125_SNP [dm3] 2R_5461620_SNP [dm6]	C	T	3.732e^-4	0.922	INTERGENIC	transposable element FlyBase
2L	15607491	2L_15607491_SNP [dm3] 2L_15607491_SNP [dm6]	C	G	3.733e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21470940	3R_21470940_SNP [dm3] 3R_25645218_SNP [dm6]	C	A	3.748e^-4	0.922	INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	19380982	2L_19380982_SNP [dm3] 2L_19380982_SNP [dm6]	C	T	3.753e^-4	0.922	UTR_5_PRIME CG17350
3R	7977177	3R_7977177_INS [dm3] 3R_12151455_INS [dm6]	A	AG	3.754e^-4	0.922	INTRON dpr15
X	2331949	X_2331949_SNP [dm3] X_2437916_SNP [dm6]	T	C	3.755e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2332236	X_2332236_SNP [dm3] X_2438203_SNP [dm6]	T	C	3.755e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9487091	2L_9487091_SNP [dm3] 2L_9487091_SNP [dm6]	G	T	3.760e^-4	0.922	INTERGENIC
X	6189291	X_6189291_SNP [dm3] X_6295258_SNP [dm6]	C	T	3.766e^-4	0.922	UTR_5_PRIME CG15891 UPSTREAM CG15892 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens
2L	20303161	2L_20303161_SNP [dm3] 2L_20303161_SNP [dm6]	C	G	3.802e^-4	0.922	INTERGENIC
2R	19202942	2R_19202942_SNP [dm3] 2R_23315419_SNP [dm6]	T	C	3.803e^-4	0.922	INTERGENIC
2L	20642351	2L_20642351_SNP [dm3] 2L_20642351_SNP [dm6]	C	T	3.804e^-4	0.922	UTR_3_PRIME CG17470 DOWNSTREAM Sfp38D & 1 other
2R	10861561	2R_10861561_DEL [dm3] 2R_14974056_DEL [dm6]	TCGGGT	T	3.805e^-4	0.922	INTRON ckn	TF binding site BDTNP1_TFBS_dl
2L	20642248	2L_20642248_SNP [dm3] 2L_20642248_SNP [dm6]	G	A	3.808e^-4	0.922	DOWNSTREAM CG17470 & 1 other INTERGENIC
X	16679360	X_16679360_SNP [dm3] X_16785327_SNP [dm6]	A	T	3.820e^-4	0.922	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3L	10960270	3L_10960270_SNP [dm3] 3L_10967170_SNP [dm6]	A	T	3.843e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11043271	3R_11043271_SNP [dm3] 3R_15217549_SNP [dm6]	G	T	3.844e^-4	0.922	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12035679	3R_12035679_SNP [dm3] 3R_16209957_SNP [dm6]	T	C	3.852e^-4	0.922	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	4440201	2L_4440201_SNP [dm3] 2L_4440201_SNP [dm6]	C	T	3.857e^-4	0.922	UPSTREAM CG15431 INTRON CG15431
3L	4440526	3L_4440526_SNP [dm3] 3L_4440526_SNP [dm6]	G	A	3.864e^-4	0.922	INTERGENIC
3R	13955400	3R_13955400_SNP [dm3] 3R_18129678_SNP [dm6]	T	A	3.868e^-4	0.922	INTRON sr	TF binding site mE1_TFBS_inv
2R	12046502	2R_12046502_SNP [dm3] 2R_16158997_SNP [dm6]	G	A	3.872e^-4	0.922	UPSTREAM CG10734 INTRON lbk
X	3759270	X_3759270_SNP [dm3] X_3865237_SNP [dm6]	A	C	3.873e^-4	0.922	SYNONYMOUS_CODING yin	TF binding site mE1_TFBS_HSA
3R	6294152	3R_6294152_SNP [dm3] 3R_10468430_SNP [dm6]	G	A	3.876e^-4	0.922	INTERGENIC
3R	19081581	3R_19081581_SNP [dm3] 3R_23255859_SNP [dm6]	A	C	3.882e^-4	0.922	SYNONYMOUS_CODING wda DOWNSTREAM EloA	TF binding site mE1_TFBS_cad
3L	8109933	3L_8109933_SNP [dm3] 3L_8116833_SNP [dm6]	G	A	3.885e^-4	0.922	UPSTREAM Arp3 INTRON msk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	18289724	X_18289724_SNP [dm3] X_18395691_SNP [dm6]	T	A	3.893e^-4	0.922	INTRON CG32549
2L	10360603	2L_10360603_SNP [dm3] 2L_10360603_SNP [dm6]	A	G	3.893e^-4	0.922	SYNONYMOUS_CODING Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9907229	2R_9907229_SNP [dm3] 2R_14019724_SNP [dm6]	C	A	3.899e^-4	0.922	INTRON mam
2L	3426299	2L_3426299_SNP [dm3] 2L_3426299_SNP [dm6]	C	T	3.901e^-4	0.922	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	24923193	3R_24923193_DEL [dm3] 3R_29097471_DEL [dm6]	ACTGACTTCAGATTTGGGAA...	A	3.919e^-4	0.922	DOWNSTREAM CR45030 INTRON CG11873
3L	5239312	3L_5239312_SNP [dm3] 3L_5246212_SNP [dm6]	A	T	3.922e^-4	0.922	INTRON shep
X	14459381	X_14459381_SNP [dm3] X_14565348_SNP [dm6]	A	G	3.927e^-4	0.922	INTERGENIC
3R	22817821	3R_22817821_SNP [dm3] 3R_26992099_SNP [dm6]	G	A	3.948e^-4	0.922	INTERGENIC
2R	840592	2R_840592_SNP [dm3] 2R_4953087_SNP [dm6]	G	A	3.951e^-4	0.922	INTRON Ir41a	transposable element FlyBase
2R	1260844	2R_1260844_SNP [dm3] 2R_5373339_SNP [dm6]	G	A	3.952e^-4	0.922	INTERGENIC	transposable element FlyBase
2R	1261018	2R_1261018_SNP [dm3] 2R_5373513_SNP [dm6]	A	G	3.952e^-4	0.922	INTERGENIC	transposable element FlyBase
2R	20325966	2R_20325966_INS [dm3] 2R_24438443_INS [dm6]	T	TT	3.958e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12690761	2R_12690761_SNP [dm3] 2R_16803256_SNP [dm6]	G	A	3.958e^-4	0.922	INTERGENIC
2L	15283134	2L_15283134_SNP [dm3] 2L_15283134_SNP [dm6]	G	T	3.962e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15283158	2L_15283158_SNP [dm3] 2L_15283158_SNP [dm6]	C	A	3.962e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17141498	2R_17141498_SNP [dm3] 2R_21253993_SNP [dm6]	T	G	3.971e^-4	0.922	INTERGENIC
3L	10064349	3L_10064349_SNP [dm3] 3L_10071249_SNP [dm6]	G	A	3.980e^-4	0.922	INTRON dpr6
3L	14911084	3L_14911084_SNP [dm3] 3L_14917984_SNP [dm6]	T	C	3.983e^-4	0.922	INTRON DCX-EMAP
3R	12906305	3R_12906305_SNP [dm3] 3R_17080583_SNP [dm6]	C	A	3.988e^-4	0.922	UPSTREAM Keap1 INTRON kuk	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9940133	X_9940133_SNP [dm3] X_10046100_SNP [dm6]	G	C	3.988e^-4	0.922	DOWNSTREAM Cht6 INTRON Cht6 EXON CR45185 & 1 other
2L	4440236	2L_4440236_SNP [dm3] 2L_4440236_SNP [dm6]	C	A	3.992e^-4	0.922	UPSTREAM CG15431 INTRON CG15431
2R	20088199	2R_20088199_SNP [dm3] 2R_24200676_SNP [dm6]	A	G	3.997e^-4	0.922	SYNONYMOUS_CODING CG3356	TF binding site mE1_TFBS_cad
2R	511763	2R_511763_SNP [dm3] 2R_4624258_SNP [dm6]	A	C	3.999e^-4	0.922	INTERGENIC
3R	4030890	3R_4030890_SNP [dm3] 3R_8205168_SNP [dm6]	A	G	4.004e^-4	0.922	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13433879	3R_13433879_SNP [dm3] 3R_17608157_SNP [dm6]	C	T	4.010e^-4	0.922	SYNONYMOUS_CODING sll
3R	12559197	3R_12559197_SNP [dm3] 3R_16733475_SNP [dm6]	C	A	4.015e^-4	0.922	UTR_5_PRIME Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13213301	2R_13213301_SNP [dm3] 2R_17325796_SNP [dm6]	C	G	4.017e^-4	0.922	INTRON mbl
2R	741688	2R_741688_SNP [dm3] 2R_4854183_SNP [dm6]	A	G	4.024e^-4	0.922	INTERGENIC
X	6477108	X_6477108_SNP [dm3] X_6583075_SNP [dm6]	A	T	4.035e^-4	0.922	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	6774428	2L_6774428_INS [dm3] 2L_6774428_INS [dm6]	T	TGGGCC	4.036e^-4	0.922	UTR_5_PRIME CG17378
2R	975537	2R_975537_SNP [dm3] 2R_5088032_SNP [dm6]	G	T	4.041e^-4	0.922	INTERGENIC
3L	12312333	3L_12312333_SNP [dm3] 3L_12319233_SNP [dm6]	T	A	4.048e^-4	0.922	INTERGENIC
3R	6509784	3R_6509784_DEL [dm3] 3R_10684062_DEL [dm6]	ACTTCATCATCA...	A	4.054e^-4	0.922	EXON CR44230
3L	10961986	3L_10961986_SNP [dm3] 3L_10968886_SNP [dm6]	A	G	4.055e^-4	0.922	INTERGENIC
3L	1727765	3L_1727765_SNP [dm3] 3L_1727765_SNP [dm6]	T	C	4.060e^-4	0.922	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	6782822	3R_6782822_SNP [dm3] 3R_10957100_SNP [dm6]	T	A	4.061e^-4	0.922	INTERGENIC
3R	16712197	3R_16712197_SNP [dm3] 3R_20886475_SNP [dm6]	A	C	4.061e^-4	0.922	INTERGENIC
2R	1302886	2R_1302886_SNP [dm3] 2R_5415381_SNP [dm6]	A	C	4.062e^-4	0.922	UPSTREAM laccase2 INTRON laccase2	TF binding site mE1_TFBS_kn
3R	20872334	3R_20872334_SNP [dm3] 3R_25046612_SNP [dm6]	G	A	4.064e^-4	0.922	INTRON CG11786
2L	15283155	2L_15283155_SNP [dm3] 2L_15283155_SNP [dm6]	T	A	4.065e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9066616	2L_9066616_SNP [dm3] 2L_9066616_SNP [dm6]	A	C	4.066e^-4	0.922	UTR_5_PRIME CG31708
3R	14885677	3R_14885677_SNP [dm3] 3R_19059955_SNP [dm6]	T	G	4.066e^-4	0.922	INTRON cdi	TF binding site BDTNP1_TFBS_dl
3L	14907809	3L_14907809_SNP [dm3] 3L_14914709_SNP [dm6]	A	G	4.068e^-4	0.922	INTRON DCX-EMAP
3L	14910904	3L_14910904_SNP [dm3] 3L_14917804_SNP [dm6]	G	A	4.068e^-4	0.922	INTRON DCX-EMAP
3L	14912124	3L_14912124_DEL [dm3] 3L_14919024_DEL [dm6]	CC	C	4.068e^-4	0.922	INTRON DCX-EMAP
2R	15470570	2R_15470570_SNP [dm3] 2R_19583065_SNP [dm6]	T	C	4.069e^-4	0.922	INTRON sm
3R	14773844	3R_14773844_SNP [dm3] 3R_18948122_SNP [dm6]	G	T	4.079e^-4	0.922	INTRON CG42613
2L	9487056	2L_9487056_SNP [dm3] 2L_9487056_SNP [dm6]	T	A	4.080e^-4	0.922	INTERGENIC
2R	10819245	2R_10819245_SNP [dm3] 2R_14931740_SNP [dm6]	T	C	4.088e^-4	0.922	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7789622	2L_7789622_SNP [dm3] 2L_7789622_SNP [dm6]	G	C	4.090e^-4	0.922	INTRON CG7149
2L	923702	2L_923702_SNP [dm3] 2L_923702_SNP [dm6]	A	G	4.097e^-4	0.922	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21473997	3R_21473997_DEL [dm3] 3R_25648275_DEL [dm6]	TAC	T	4.097e^-4	0.922	UTR_5_PRIME jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	12687493	2R_12687493_MNP [dm3] 2R_16799988_MNP [dm6]	CGC	TTA	4.101e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	17586981	X_17586981_INS [dm3] X_17692948_INS [dm6]	A	ACAATA	4.103e^-4	0.922	INTRON chas
2R	11788241	2R_11788241_SNP [dm3] 2R_15900736_SNP [dm6]	A	G	4.119e^-4	0.925	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19212067	X_19212067_SNP [dm3] X_19318034_SNP [dm6]	T	G	4.125e^-4	0.925	INTRON out
3R	6524826	3R_6524826_SNP [dm3] 3R_10699104_SNP [dm6]	T	C	4.150e^-4	0.928	UPSTREAM pug DOWNSTREAM CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12405010	2R_12405010_SNP [dm3] 2R_16517505_SNP [dm6]	T	G	4.159e^-4	0.928	INTRON Sema-2a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18137394	2L_18137394_SNP [dm3] 2L_18137394_SNP [dm6]	A	C	4.162e^-4	0.928	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16557792	2L_16557792_SNP [dm3] 2L_16557792_SNP [dm6]	T	G	4.163e^-4	0.928	INTRON CG42389
X	2822180	X_2822180_SNP [dm3] X_2928147_SNP [dm6]	C	T	4.165e^-4	0.928	UPSTREAM CG14424 INTRON kirre
2R	19172012	2R_19172012_SNP [dm3] 2R_23284489_SNP [dm6]	G	A	4.167e^-4	0.928	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
3R	12608567	3R_12608567_SNP [dm3] 3R_16782845_SNP [dm6]	G	T	4.184e^-4	0.929	UPSTREAM CR44945 INTERGENIC
3R	12906331	3R_12906331_DEL [dm3] 3R_17080609_DEL [dm6]	TT	T	4.189e^-4	0.929	UPSTREAM Keap1 INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8189150	3R_8189150_SNP [dm3] 3R_12363428_SNP [dm6]	A	G	4.191e^-4	0.929	DOWNSTREAM Tim17a1 & 2 others INTERGENIC
3L	2644304	3L_2644304_SNP [dm3] 3L_2644304_SNP [dm6]	T	C	4.201e^-4	0.929	UPSTREAM CG14949 INTERGENIC
X	15285259	X_15285259_SNP [dm3] X_15391226_SNP [dm6]	A	G	4.203e^-4	0.929	INTRON Cngl
2R	9969293	2R_9969293_SNP [dm3] 2R_14081788_SNP [dm6]	A	T	4.208e^-4	0.929	INTRON Prosap
3L	10031522	3L_10031522_DEL [dm3] 3L_10038422_DEL [dm6]	AGA	A	4.214e^-4	0.929	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6071285	2L_6071285_SNP [dm3] 2L_6071285_SNP [dm6]	C	T	4.218e^-4	0.929	UPSTREAM CG9154 & 1 other INTRON Kr-h2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	1337527	2R_1337527_SNP [dm3] 2R_5450022_SNP [dm6]	G	T	4.218e^-4	0.929	INTRON laccase2
2L	4443376	2L_4443376_SNP [dm3] 2L_4443376_SNP [dm6]	T	G	4.221e^-4	0.929	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9643882	2L_9643882_SNP [dm3] 2L_9643882_SNP [dm6]	C	T	4.226e^-4	0.929	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13824080	X_13824080_SNP [dm3] X_13930047_SNP [dm6]	G	A	4.239e^-4	0.93	INTRON mamo
2R	1260976	2R_1260976_SNP [dm3] 2R_5373471_SNP [dm6]	C	T	4.254e^-4	0.931	INTERGENIC	transposable element FlyBase
3L	18859420	3L_18859420_SNP [dm3] 3L_18866320_SNP [dm6]	T	C	4.259e^-4	0.931	SPLICE_SITE_REGION CG14074 UTR_5_PRIME CG14074 DOWNSTREAM CG6865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8563832	3L_8563832_SNP [dm3] 3L_8570732_SNP [dm6]	C	T	4.263e^-4	0.931	UTR_3_PRIME rhea DOWNSTREAM CR43910 INTRON rhea
2L	2003941	2L_2003941_SNP [dm3] 2L_2003941_SNP [dm6]	G	T	4.272e^-4	0.931	DOWNSTREAM CR43464 INTRON CG33543
2L	12681166	2L_12681166_SNP [dm3] 2L_12681166_SNP [dm6]	T	C	4.279e^-4	0.931	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7282906	3L_7282906_SNP [dm3] 3L_7289806_SNP [dm6]	T	C	4.282e^-4	0.931	INTRON unc-13-4A
2L	9654026	2L_9654026_SNP [dm3] 2L_9654026_SNP [dm6]	G	T	4.283e^-4	0.931	INTRON Apoltp
2R	9288065	2R_9288065_DEL [dm3] 2R_13400560_DEL [dm6]	ATCCAGAA	A	4.291e^-4	0.931	INTERGENIC
3R	6525233	3R_6525233_SNP [dm3] 3R_10699511_SNP [dm6]	C	G	4.292e^-4	0.931	UPSTREAM pug DOWNSTREAM CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9901427	3R_9901427_SNP [dm3] 3R_14075705_SNP [dm6]	T	C	4.293e^-4	0.931	INTRON foxo
3R	13433540	3R_13433540_SNP [dm3] 3R_17607818_SNP [dm6]	G	C	4.308e^-4	0.932	INTRON sll
3R	13433633	3R_13433633_SNP [dm3] 3R_17607911_SNP [dm6]	G	C	4.310e^-4	0.932	INTRON sll
3R	11029332	3R_11029332_SNP [dm3] 3R_15203610_SNP [dm6]	G	A	4.315e^-4	0.932	SYNONYMOUS_CODING Spn88Ea DOWNSTREAM CG42542	TF binding site mE1_TFBS_cad
3R	8189156	3R_8189156_SNP [dm3] 3R_12363434_SNP [dm6]	T	C	4.317e^-4	0.932	DOWNSTREAM Tim17a1 & 2 others INTERGENIC
2L	7697836	2L_7697836_SNP [dm3] 2L_7697836_SNP [dm6]	C	T	4.326e^-4	0.932	INTRON Tep2
3R	15401062	3R_15401062_SNP [dm3] 3R_19575340_SNP [dm6]	C	T	4.351e^-4	0.932	INTRON Dys
3L	10473682	3L_10473682_SNP [dm3] 3L_10480582_SNP [dm6]	C	A	4.351e^-4	0.932	UPSTREAM A2bp1 INTERGENIC
2L	9624403	2L_9624403_SNP [dm3] 2L_9624403_SNP [dm6]	G	A	4.357e^-4	0.932	DOWNSTREAM CG31882 INTERGENIC
2L	12681111	2L_12681111_SNP [dm3] 2L_12681111_SNP [dm6]	G	A	4.358e^-4	0.932	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12611035	3R_12611035_SNP [dm3] 3R_16785313_SNP [dm6]	T	C	4.360e^-4	0.932	DOWNSTREAM CR44945 INTERGENIC
3L	16740155	3L_16740155_SNP [dm3] 3L_16747055_SNP [dm6]	T	C	4.362e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	983525	2R_983525_DEL [dm3] 2R_5096020_DEL [dm6]	ACG	A	4.363e^-4	0.932	DOWNSTREAM CG3107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	3713453	2L_3713453_SNP [dm3] 2L_3713453_SNP [dm6]	A	C	4.372e^-4	0.932	UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7944142	3R_7944142_SNP [dm3] 3R_12118420_SNP [dm6]	G	A	4.374e^-4	0.932	INTERGENIC
2L	22063221	2L_22063221_SNP [dm3] 2L_22063221_SNP [dm6]	C	A	4.375e^-4	0.932	INTERGENIC
2R	1249859	2R_1249859_SNP [dm3] 2R_5362354_SNP [dm6]	T	C	4.386e^-4	0.932	NON_SYNONYMOUS_CODING CG10417 UPSTREAM CR42646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	678206	2R_678206_SNP [dm3] 2R_4790701_SNP [dm6]	T	G	4.387e^-4	0.932	INTERGENIC	transposable element FlyBase
X	11827373	X_11827373_SNP [dm3] X_11933340_SNP [dm6]	C	T	4.387e^-4	0.932	UTR_3_PRIME cac DOWNSTREAM cac
2L	1598483	2L_1598483_SNP [dm3] 2L_1598483_SNP [dm6]	T	G	4.391e^-4	0.932	INTRON haf & 1 other
3R	22824792	3R_22824792_SNP [dm3] 3R_26999070_SNP [dm6]	C	T	4.403e^-4	0.934	UPSTREAM CG31077 INTRON RYa-R
3L	10627134	3L_10627134_DEL [dm3] 3L_10634034_DEL [dm6]	CTTTACC	C	4.412e^-4	0.934	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2R	18918321	2R_18918321_SNP [dm3] 2R_23030798_SNP [dm6]	C	T	4.423e^-4	0.934	INTRON twi & 1 other
2R	18918330	2R_18918330_SNP [dm3] 2R_23030807_SNP [dm6]	C	T	4.423e^-4	0.934	INTRON twi & 1 other
3L	10021342	3L_10021342_SNP [dm3] 3L_10028242_SNP [dm6]	T	C	4.427e^-4	0.934	INTRON dpr6
3R	10861692	3R_10861692_SNP [dm3] 3R_15035970_SNP [dm6]	T	C	4.429e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14236652	3R_14236652_SNP [dm3] 3R_18410930_SNP [dm6]	T	C	4.443e^-4	0.935	SYNONYMOUS_CODING CG10864 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10180409	3R_10180409_SNP [dm3] 3R_14354687_SNP [dm6]	A	G	4.462e^-4	0.935	INTRON NK7.1
X	9931971	X_9931971_SNP [dm3] X_10037938_SNP [dm6]	C	G	4.466e^-4	0.935	SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	12513102	3R_12513102_SNP [dm3] 3R_16687380_SNP [dm6]	A	T	4.469e^-4	0.935	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14229882	3R_14229882_SNP [dm3] 3R_18404160_SNP [dm6]	T	C	4.470e^-4	0.935	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14229789	3R_14229789_SNP [dm3] 3R_18404067_SNP [dm6]	C	T	4.471e^-4	0.935	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14229846	3R_14229846_SNP [dm3] 3R_18404124_SNP [dm6]	C	G	4.471e^-4	0.935	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13212612	2R_13212612_SNP [dm3] 2R_17325107_SNP [dm6]	C	T	4.480e^-4	0.936	INTRON mbl
2L	1121964	2L_1121964_INS [dm3] 2L_1121964_INS [dm6]	A	ATA	4.492e^-4	0.936	INTRON Pino
X	16679135	X_16679135_DEL [dm3] X_16785102_DEL [dm6]	AGAGGTTC	T	4.492e^-4	0.936	DOWNSTREAM CG9609 & 1 other INTERGENIC
2R	16514035	2R_16514035_SNP [dm3] 2R_20626530_SNP [dm6]	C	T	4.512e^-4	0.936	SYNONYMOUS_CODING CG16742
3R	23640294	3R_23640294_SNP [dm3] 3R_27814572_SNP [dm6]	C	A	4.512e^-4	0.936	INTRON CG34353
3R	12083126	3R_12083126_SNP [dm3] 3R_16257404_SNP [dm6]	C	T	4.516e^-4	0.936	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7798807	3R_7798807_SNP [dm3] 3R_11973085_SNP [dm6]	C	A	4.517e^-4	0.936	DOWNSTREAM Tango9 & 1 other INTERGENIC
X	19244391	X_19244391_SNP [dm3] X_19350358_SNP [dm6]	G	A	4.520e^-4	0.936	INTERGENIC
3R	13955412	3R_13955412_SNP [dm3] 3R_18129690_SNP [dm6]	G	C	4.521e^-4	0.936	INTRON sr	TF binding site mE1_TFBS_inv
2R	10721913	2R_10721913_SNP [dm3] 2R_14834408_SNP [dm6]	C	A	4.528e^-4	0.937	DOWNSTREAM CG10205 INTERGENIC
2R	15915693	2R_15915693_DEL [dm3] 2R_20028188_DEL [dm6]	GCG	G	4.532e^-4	0.937	INTERGENIC	TF binding site mE1_TFBS_Trl
X	2614589	X_2614589_SNP [dm3] X_2720556_SNP [dm6]	A	C	4.561e^-4	0.941	UTR_5_PRIME fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	967390	3L_967390_SNP [dm3] 3L_967390_SNP [dm6]	G	A	4.563e^-4	0.941	UTR_5_PRIME Glut1
2R	5949645	2R_5949645_SNP [dm3] 2R_10062140_SNP [dm6]	A	G	4.575e^-4	0.942	SYNONYMOUS_CODING magu
2L	2764140	2L_2764140_SNP [dm3] 2L_2764140_SNP [dm6]	A	C	4.576e^-4	0.942	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
X	8440563	X_8440563_SNP [dm3] X_8546530_SNP [dm6]	C	T	4.585e^-4	0.942	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16651923	2R_16651923_SNP [dm3] 2R_20764418_SNP [dm6]	C	A	4.604e^-4	0.944	INTERGENIC
3L	2635715	3L_2635715_SNP [dm3] 3L_2635715_SNP [dm6]	G	T	4.614e^-4	0.944	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3268059	3L_3268059_SNP [dm3] 3L_3268059_SNP [dm6]	A	G	4.618e^-4	0.944	UTR_3_PRIME ckd UPSTREAM CG34265 DOWNSTREAM ckd
2R	12866665	2R_12866665_SNP [dm3] 2R_16979160_SNP [dm6]	C	T	4.622e^-4	0.944	INTRON Cbp53E
2R	10861556	2R_10861556_SNP [dm3] 2R_14974051_SNP [dm6]	A	T	4.646e^-4	0.944	INTRON ckn	TF binding site BDTNP1_TFBS_dl
2R	16490343	2R_16490343_SNP [dm3] 2R_20602838_SNP [dm6]	T	C	4.649e^-4	0.944	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2733021	2R_2733021_SNP [dm3] 2R_6845516_SNP [dm6]	T	C	4.649e^-4	0.944	INTERGENIC
3R	11543653	3R_11543653_SNP [dm3] 3R_15717931_SNP [dm6]	G	C	4.653e^-4	0.944	INTERGENIC
3L	1711750	3L_1711750_SNP [dm3] 3L_1711750_SNP [dm6]	C	T	4.656e^-4	0.944	INTRON CG7991
2R	15823081	2R_15823081_SNP [dm3] 2R_19935576_SNP [dm6]	T	C	4.658e^-4	0.944	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12034302	3R_12034302_SNP [dm3] 3R_16208580_SNP [dm6]	G	A	4.661e^-4	0.944	UPSTREAM CR45640 & 1 other DOWNSTREAM CR45638 EXON CR45639
2L	8301876	2L_8301876_SNP [dm3] 2L_8301876_SNP [dm6]	T	G	4.663e^-4	0.944	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6498361	2L_6498361_SNP [dm3] 2L_6498361_SNP [dm6]	G	T	4.665e^-4	0.944	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	4440488	3L_4440488_SNP [dm3] 3L_4440488_SNP [dm6]	G	T	4.673e^-4	0.944	INTERGENIC
2L	16702029	2L_16702029_SNP [dm3] 2L_16702029_SNP [dm6]	A	C	4.673e^-4	0.944	EXON CR43670	TF binding site mE1_TFBS_sens
2L	12809666	2L_12809666_SNP [dm3] 2L_12809666_SNP [dm6]	A	G	4.678e^-4	0.944	INTERGENIC
2R	4474457	2R_4474457_SNP [dm3] 2R_8586952_SNP [dm6]	C	T	4.681e^-4	0.944	INTERGENIC
X	3164884	X_3164884_SNP [dm3] X_3270851_SNP [dm6]	A	C	4.685e^-4	0.944	INTRON dnc
3L	5537286	3L_5537286_SNP [dm3] 3L_5544186_SNP [dm6]	G	A	4.687e^-4	0.944	DOWNSTREAM CG10625 INTRON CG10625
3R	7392220	3R_7392220_SNP [dm3] 3R_11566498_SNP [dm6]	C	A	4.693e^-4	0.944	INTRON fabp & 1 other	TF binding site mE1_TFBS_Trl
2R	12224604	2R_12224604_SNP [dm3] 2R_16337099_SNP [dm6]	T	C	4.708e^-4	0.945	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10061536	3L_10061536_SNP [dm3] 3L_10068436_SNP [dm6]	C	A	4.714e^-4	0.945	INTRON dpr6
2R	10861541	2R_10861541_SNP [dm3] 2R_14974036_SNP [dm6]	A	T	4.719e^-4	0.945	INTRON ckn	TF binding site BDTNP1_TFBS_dl
2R	10861553	2R_10861553_SNP [dm3] 2R_14974048_SNP [dm6]	A	G	4.719e^-4	0.945	INTRON ckn	TF binding site BDTNP1_TFBS_dl
3L	10961987	3L_10961987_SNP [dm3] 3L_10968887_SNP [dm6]	C	G	4.735e^-4	0.945	INTERGENIC
3R	12035209	3R_12035209_SNP [dm3] 3R_16209487_SNP [dm6]	G	A	4.736e^-4	0.945	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
2L	5978649	2L_5978649_SNP [dm3] 2L_5978649_SNP [dm6]	A	G	4.740e^-4	0.945	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8141018	2L_8141018_SNP [dm3] 2L_8141018_SNP [dm6]	G	A	4.747e^-4	0.945	DOWNSTREAM mir-4984 INTRON CG8552	TF binding site mE1_TFBS_cad
3L	10775719	3L_10775719_SNP [dm3] 3L_10782619_SNP [dm6]	T	G	4.751e^-4	0.945	INTERGENIC
2L	1359712	2L_1359712_SNP [dm3] 2L_1359712_SNP [dm6]	T	A	4.752e^-4	0.945	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
3R	11205579	3R_11205579_SNP [dm3] 3R_15379857_SNP [dm6]	T	A	4.755e^-4	0.945	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	1824889	3L_1824889_SNP [dm3] 3L_1824889_SNP [dm6]	T	A	4.776e^-4	0.945	INTRON Cpr62Ba
3R	12533921	3R_12533921_SNP [dm3] 3R_16708199_SNP [dm6]	G	A	4.776e^-4	0.945	INTRON Ubx
2L	13204836	2L_13204836_INS [dm3] 2L_13204836_INS [dm6]	A	ACTCTCAACTTA...	4.776e^-4	0.945	INTRON Pect	TF binding site BDTNP1_TFBS_dl
X	18469090	X_18469090_SNP [dm3] X_18575057_SNP [dm6]	G	A	4.776e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17872423	2L_17872423_SNP [dm3] 2L_17872423_SNP [dm6]	T	C	4.782e^-4	0.945	INTRON CadN2
3R	7801787	3R_7801787_SNP [dm3] 3R_11976065_SNP [dm6]	A	G	4.783e^-4	0.945	INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26586096	3R_26586096_SNP [dm3] 3R_30760374_SNP [dm6]	C	G	4.804e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6273419	3L_6273419_SNP [dm3] 3L_6280319_SNP [dm6]	A	G	4.814e^-4	0.948	INTERGENIC
3L	12782849	3L_12782849_SNP [dm3] 3L_12789749_SNP [dm6]	T	A	4.816e^-4	0.948	UPSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	981128	2R_981128_SNP [dm3] 2R_5093623_SNP [dm6]	A	C	4.825e^-4	0.948	NON_SYNONYMOUS_CODING CG3107
3R	16185540	3R_16185540_SNP [dm3] 3R_20359818_SNP [dm6]	A	C	4.829e^-4	0.948	UPSTREAM MtnC EXON CR45023
3R	12906306	3R_12906306_SNP [dm3] 3R_17080584_SNP [dm6]	C	T	4.830e^-4	0.948	UPSTREAM Keap1 INTRON kuk	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17586958	X_17586958_SNP [dm3] X_17692925_SNP [dm6]	A	C	4.835e^-4	0.948	INTRON chas
3R	11006294	3R_11006294_SNP [dm3] 3R_15180572_SNP [dm6]	T	G	4.848e^-4	0.949	UPSTREAM Mf INTRON Gyc88E & 1 other
3L	9487600	3L_9487600_SNP [dm3] 3L_9494500_SNP [dm6]	T	A	4.852e^-4	0.949	DOWNSTREAM path INTERGENIC
2L	5162628	2L_5162628_SNP [dm3] 2L_5162628_SNP [dm6]	C	A	4.858e^-4	0.949	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3R	12557435	3R_12557435_SNP [dm3] 3R_16731713_SNP [dm6]	T	A	4.858e^-4	0.949	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22235917	3R_22235917_SNP [dm3] 3R_26410195_SNP [dm6]	T	A	4.867e^-4	0.949	INTERGENIC
2R	1260342	2R_1260342_SNP [dm3] 2R_5372837_SNP [dm6]	T	A	4.876e^-4	0.949	INTERGENIC
2R	20357021	2R_20357021_SNP [dm3] 2R_24469498_SNP [dm6]	A	T	4.894e^-4	0.949	INTRON CG13579
2R	5830099	2R_5830099_SNP [dm3] 2R_9942594_SNP [dm6]	C	T	4.895e^-4	0.949	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	19269505	2L_19269505_SNP [dm3] 2L_19269505_SNP [dm6]	G	C	4.899e^-4	0.949	EXON CR44190
2R	5828006	2R_5828006_SNP [dm3] 2R_9940501_SNP [dm6]	G	A	4.906e^-4	0.949	INTRON Mef2	regulatory region REDfly_CRMs
3L	3138257	3L_3138257_SNP [dm3] 3L_3138257_SNP [dm6]	A	T	4.929e^-4	0.949	INTRON CG11537
3R	24688946	3R_24688946_INS [dm3] 3R_28863224_INS [dm6]	T	TATA	4.932e^-4	0.949	INTRON spg
3L	2825023	3L_2825023_SNP [dm3] 3L_2825023_SNP [dm6]	A	G	4.940e^-4	0.949	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12512361	3R_12512361_SNP [dm3] 3R_16686639_SNP [dm6]	G	T	4.947e^-4	0.949	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16386203	3L_16386203_SNP [dm3] 3L_16393103_SNP [dm6]	A	T	4.954e^-4	0.949	INTRON CG44836	TF binding site mE1_TFBS_HSA
X	8924898	X_8924898_SNP [dm3] X_9030865_SNP [dm6]	A	G	4.959e^-4	0.949	UTR_5_PRIME CG42388 INTRON CR43836
3R	9782617	3R_9782617_DEL [dm3] 3R_13956895_DEL [dm6]	CATTAATAAAAC...	C	4.963e^-4	0.949	INTERGENIC
3R	18597451	3R_18597451_SNP [dm3] 3R_22771729_SNP [dm6]	A	C	4.965e^-4	0.949	UPSTREAM CG43094 INTRON Usp12-46 & 2 others
3R	1744992	3R_1744992_SNP [dm3] 3R_5919270_SNP [dm6]	G	A	4.976e^-4	0.949	INTRON CG34113
3R	9589907	3R_9589907_SNP [dm3] 3R_13764185_SNP [dm6]	A	T	4.976e^-4	0.949	UTR_3_PRIME CG34383
3L	5672189	3L_5672189_SNP [dm3] 3L_5679089_SNP [dm6]	A	C	4.983e^-4	0.949	UTR_5_PRIME sif INTRON sif	insulator Insulator_Class_II.mE01
3R	10322991	3R_10322991_SNP [dm3] 3R_14497269_SNP [dm6]	C	T	4.987e^-4	0.949	INTRON CR44177
2R	811780	2R_811780_SNP [dm3] 2R_4924275_SNP [dm6]	G	A	4.990e^-4	0.949	INTRON Ir41a
3L	6708472	3L_6708472_SNP [dm3] 3L_6715372_SNP [dm6]	T	A	4.993e^-4	0.949	INTRON ple	TF binding site mE1_TFBS_chinmo
2R	5848377	2R_5848377_SNP [dm3] 2R_9960872_SNP [dm6]	C	A	4.994e^-4	0.949	SYNONYMOUS_CODING Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1067967	3L_1067967_INS [dm3] 3L_1067967_INS [dm6]	G	GGAGTCCAG	4.994e^-4	0.949	INTRON bab1
2L	10446466	2L_10446466_SNP [dm3] 2L_10446466_SNP [dm6]	G	A	4.998e^-4	0.949	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14144439	3R_14144439_SNP [dm3] 3R_18318717_SNP [dm6]	C	T	5.000e^-4	0.949	INTRON CG31235
2L	5987091	2L_5987091_SNP [dm3] 2L_5987091_SNP [dm6]	C	T	5.010e^-4	0.949	UTR_5_PRIME ifc INTRON ifc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3925882	3L_3925882_DEL [dm3] 3L_3925882_DEL [dm6]	GAGAATGTGTCG...	G	5.015e^-4	0.949	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	17997829	3R_17997829_DEL [dm3] 3R_22172107_DEL [dm6]	AA	A	5.017e^-4	0.949	INTRON SKIP
3R	17997835	3R_17997835_DEL [dm3] 3R_22172113_DEL [dm6]	GT	G	5.017e^-4	0.949	INTRON SKIP
3R	6805072	3R_6805072_SNP [dm3] 3R_10979350_SNP [dm6]	T	A	5.028e^-4	0.949	INTRON CG34114
3L	8667972	3L_8667972_SNP [dm3] 3L_8674872_SNP [dm6]	A	G	5.033e^-4	0.949	UPSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	2016827	3R_2016827_SNP [dm3] 3R_6191105_SNP [dm6]	C	T	5.034e^-4	0.949	INTRON NPFR
3L	12865327	3L_12865327_SNP [dm3] 3L_12872227_SNP [dm6]	A	T	5.037e^-4	0.949	INTERGENIC
3L	14334694	3L_14334694_SNP [dm3] 3L_14341594_SNP [dm6]	C	G	5.039e^-4	0.949	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	1711328	3L_1711328_SNP [dm3] 3L_1711328_SNP [dm6]	C	T	5.040e^-4	0.949	INTRON CG7991
2R	3011918	2R_3011918_SNP [dm3] 2R_7124413_SNP [dm6]	A	G	5.045e^-4	0.949	INTRON esn
2L	10019540	2L_10019540_SNP [dm3] 2L_10019540_SNP [dm6]	C	T	5.048e^-4	0.949	INTERGENIC
2R	19547841	2R_19547841_INS [dm3] 2R_23660318_INS [dm6]	G	GGTG	5.061e^-4	0.949	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	5.061e^-4	0.949	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19548249	2R_19548249_SNP [dm3] 2R_23660726_SNP [dm6]	A	G	5.061e^-4	0.949	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	5.061e^-4	0.949	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

TyrR_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results