DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.541e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1963 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15012988	3R_15012988_INS [dm3] 3R_19187266_INS [dm6]	C	GCTCT	1.879e^-6	0.943	INTRON CG31475	TF binding site mE1_TFBS_inv
3R	15012994	3R_15012994_SNP [dm3] 3R_19187272_SNP [dm6]	T	G	2.930e^-6	0.943	INTRON CG31475	TF binding site mE1_TFBS_inv
3R	15852506	3R_15852506_SNP [dm3] 3R_20026784_SNP [dm6]	C	T	3.957e^-6	0.943	DOWNSTREAM psidin INTRON CG4424
2L	19856691	2L_19856691_SNP [dm3] 2L_19856691_SNP [dm6]	G	A	4.531e^-6	0.943	INTRON sick
2R	13771330	2R_13771330_SNP [dm3] 2R_17883825_SNP [dm6]	G	A	6.942e^-6	0.943	INTRON Elk
3L	9946310	3L_9946310_SNP [dm3] 3L_9953210_SNP [dm6]	C	T	6.983e^-6	0.943	INTRON CG34356
2R	10171811	2R_10171811_SNP [dm3] 2R_14284306_SNP [dm6]	T	A	7.047e^-6	0.943	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19923189	2L_19923189_SNP [dm3] 2L_19923189_SNP [dm6]	T	C	7.072e^-6	0.943	INTRON sick & 1 other EXON CR43827
2L	20335041	2L_20335041_SNP [dm3] 2L_20335041_SNP [dm6]	A	C	7.225e^-6	0.943	INTRON spir
2L	20862470	2L_20862470_SNP [dm3] 2L_20862470_SNP [dm6]	G	A	7.734e^-6	0.943	DOWNSTREAM CR9337 INTERGENIC
3R	9585911	3R_9585911_SNP [dm3] 3R_13760189_SNP [dm6]	C	T	9.158e^-6	0.943	INTRON CG34383
2R	13628030	2R_13628030_SNP [dm3] 2R_17740525_SNP [dm6]	G	A	1.199e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	13628009	2R_13628009_SNP [dm3] 2R_17740504_SNP [dm6]	G	A	1.216e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	13628012	2R_13628012_SNP [dm3] 2R_17740507_SNP [dm6]	C	G	1.218e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7701220	2L_7701220_SNP [dm3] 2L_7701220_SNP [dm6]	T	A	1.236e^-5	0.943	INTRON Tep2	TF binding site mE1_TFBS_Trl
3L	17919798	3L_17919798_SNP [dm3] 3L_17926698_SNP [dm6]	G	A	1.252e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3516415	X_3516415_DEL [dm3] X_3622382_DEL [dm6]	TT	T	1.354e^-5	0.943	INTRON AstA-R1
3L	10775124	3L_10775124_SNP [dm3] 3L_10782024_SNP [dm6]	A	T	1.445e^-5	0.943	INTERGENIC
2L	6107755	2L_6107755_SNP [dm3] 2L_6107755_SNP [dm6]	A	T	1.628e^-5	0.943	INTRON stai
2R	6464832	2R_6464832_SNP [dm3] 2R_10577327_SNP [dm6]	A	G	1.702e^-5	0.943	INTRON psq
2R	8672361	2R_8672361_SNP [dm3] 2R_12784856_SNP [dm6]	A	T	1.709e^-5	0.943	INTRON sca & 1 other	regulatory region REDfly_CRMs
3R	25208577	3R_25208577_INS [dm3] 3R_29382855_INS [dm6]	A	ATACA	1.716e^-5	0.943	INTRON Ptp99A
2L	18882851	2L_18882851_SNP [dm3] 2L_18882851_SNP [dm6]	T	C	1.938e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16479528	3R_16479528_SNP [dm3] 3R_20653806_SNP [dm6]	G	T	2.111e^-5	0.943	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
3L	14731962	3L_14731962_SNP [dm3] 3L_14738862_SNP [dm6]	T	C	2.136e^-5	0.943	INTRON ome
X	11629664	X_11629664_SNP [dm3] X_11735631_SNP [dm6]	C	G	2.175e^-5	0.943	NON_SYNONYMOUS_CODING CG15221
2L	13274279	2L_13274279_SNP [dm3] 2L_13274279_SNP [dm6]	T	A	2.179e^-5	0.943	INTRON CG44085
3L	3412396	3L_3412396_SNP [dm3] 3L_3412396_SNP [dm6]	T	C	2.243e^-5	0.943	UPSTREAM mir-2282 INTRON sty
3R	16479675	3R_16479675_SNP [dm3] 3R_20653953_SNP [dm6]	A	G	2.278e^-5	0.943	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
2L	5913141	2L_5913141_SNP [dm3] 2L_5913141_SNP [dm6]	C	T	2.341e^-5	0.943	SYNONYMOUS_CODING bchs
2R	13627997	2R_13627997_SNP [dm3] 2R_17740492_SNP [dm6]	T	C	2.372e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	4325125	3L_4325125_SNP [dm3] 3L_4325125_SNP [dm6]	G	A	2.423e^-5	0.943	NON_SYNONYMOUS_CODING Cip4
2L	6834406	2L_6834406_SNP [dm3] 2L_6834406_SNP [dm6]	A	G	2.462e^-5	0.943	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25520225	3R_25520225_SNP [dm3] 3R_29694503_SNP [dm6]	A	T	2.487e^-5	0.943	INTRON dmrt99B
2R	7451746	2R_7451746_SNP [dm3] 2R_11564241_SNP [dm6]	G	T	2.510e^-5	0.943	INTERGENIC
2R	6965120	2R_6965120_SNP [dm3] 2R_11077615_SNP [dm6]	C	T	2.514e^-5	0.943	INTRON luna	TF binding site mE1_TFBS_HSA
3R	25515655	3R_25515655_SNP [dm3] 3R_29689933_SNP [dm6]	A	C	2.572e^-5	0.943	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
X	14426280	X_14426280_SNP [dm3] X_14532247_SNP [dm6]	G	A	2.628e^-5	0.943	INTERGENIC
2R	4978866	2R_4978866_SNP [dm3] 2R_9091361_SNP [dm6]	G	A	2.696e^-5	0.943	INTRON CG8080
2R	4978872	2R_4978872_SNP [dm3] 2R_9091367_SNP [dm6]	C	A	2.696e^-5	0.943	INTRON CG8080
3L	3463947	3L_3463947_SNP [dm3] 3L_3463947_SNP [dm6]	G	A	2.730e^-5	0.943	SYNONYMOUS_CODING armi
2L	20327490	2L_20327490_SNP [dm3] 2L_20327490_SNP [dm6]	T	A	2.801e^-5	0.943	INTRON spir
3L	15402265	3L_15402265_SNP [dm3] 3L_15409165_SNP [dm6]	T	A	2.896e^-5	0.943	DOWNSTREAM CG33259 INTERGENIC
3R	6504570	3R_6504570_SNP [dm3] 3R_10678848_SNP [dm6]	G	T	2.972e^-5	0.943	NON_SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	4978850	2R_4978850_SNP [dm3] 2R_9091345_SNP [dm6]	T	G	3.013e^-5	0.943	INTRON CG8080
3L	3463659	3L_3463659_SNP [dm3] 3L_3463659_SNP [dm6]	G	A	3.047e^-5	0.943	SYNONYMOUS_CODING armi
X	10026153	X_10026153_SNP [dm3] X_10132120_SNP [dm6]	T	C	3.068e^-5	0.943	INTRON CR44894 & 1 other
3L	11038442	3L_11038442_SNP [dm3] 3L_11045342_SNP [dm6]	A	G	3.071e^-5	0.943	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	19431381	3R_19431381_SNP [dm3] 3R_23605659_SNP [dm6]	A	G	3.109e^-5	0.943	UPSTREAM CG10184 DOWNSTREAM CG31145 INTERGENIC
2L	20388956	2L_20388956_SNP [dm3] 2L_20388956_SNP [dm6]	G	A	3.270e^-5	0.943	INTRON CG10947
3L	12335189	3L_12335189_SNP [dm3] 3L_12342089_SNP [dm6]	T	C	3.358e^-5	0.943	INTRON CrzR
3R	25316690	3R_25316690_SNP [dm3] 3R_29490968_SNP [dm6]	G	A	3.448e^-5	0.943	UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20226742	2L_20226742_SNP [dm3] 2L_20226742_SNP [dm6]	C	A	3.686e^-5	0.943	INTERGENIC
2R	17583321	2R_17583321_SNP [dm3] 2R_21695816_SNP [dm6]	G	A	3.691e^-5	0.943	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2R	13628162	2R_13628162_SNP [dm3] 2R_17740657_SNP [dm6]	G	A	3.759e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	13627976	2R_13627976_SNP [dm3] 2R_17740471_SNP [dm6]	G	A	3.760e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	3552794	2R_3552794_SNP [dm3] 2R_7665289_SNP [dm6]	T	A	3.805e^-5	0.943	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	5914586	3L_5914586_DEL [dm3] 3L_5921486_DEL [dm6]	ACAACA	A	3.807e^-5	0.943	UPSTREAM CG32407 & 1 other INTERGENIC
2L	14051068	2L_14051068_SNP [dm3] 2L_14051068_SNP [dm6]	C	A	3.846e^-5	0.943	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19181525	3R_19181525_SNP [dm3] 3R_23355803_SNP [dm6]	T	A	3.901e^-5	0.943	UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon INTRON ATPsyn-Cf6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16374926	2L_16374926_SNP [dm3] 2L_16374926_SNP [dm6]	A	T	3.923e^-5	0.943	INTERGENIC
2R	8672444	2R_8672444_SNP [dm3] 2R_12784939_SNP [dm6]	C	G	3.964e^-5	0.943	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
3L	3462787	3L_3462787_SNP [dm3] 3L_3462787_SNP [dm6]	A	T	4.007e^-5	0.943	SPLICE_SITE_REGION armi INTRON armi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5914965	3L_5914965_SNP [dm3] 3L_5921865_SNP [dm6]	A	T	4.065e^-5	0.943	UPSTREAM CG32407 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	25723445	3R_25723445_DEL [dm3] 3R_29897723_DEL [dm6]	ATA	A	4.095e^-5	0.943	UTR_3_PRIME CG31038 INTRON CG31038	TF binding site mE1_TFBS_chinmo
2R	13628027	2R_13628027_SNP [dm3] 2R_17740522_SNP [dm6]	G	A	4.125e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	9983800	2L_9983800_SNP [dm3] 2L_9983800_SNP [dm6]	C	T	4.211e^-5	0.943	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11349631	3L_11349631_SNP [dm3] 3L_11356531_SNP [dm6]	C	A	4.488e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12946422	X_12946422_SNP [dm3] X_13052389_SNP [dm6]	G	A	4.778e^-5	0.943	DOWNSTREAM CG12715 INTRON rad
2L	6042641	2L_6042641_SNP [dm3] 2L_6042641_SNP [dm6]	C	G	4.912e^-5	0.943	NON_SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2754643	X_2754643_SNP [dm3] X_2860610_SNP [dm6]	A	T	4.993e^-5	0.943	INTRON kirre
3L	12017812	3L_12017812_SNP [dm3] 3L_12024712_SNP [dm6]	G	A	5.010e^-5	0.943	INTRON rols
2R	19668908	2R_19668908_SNP [dm3] 2R_23781385_SNP [dm6]	G	T	5.097e^-5	0.943	INTRON CG9850
3R	10962657	3R_10962657_SNP [dm3] 3R_15136935_SNP [dm6]	C	G	5.113e^-5	0.943	UTR_5_PRIME CG6912 UPSTREAM CG3984 DOWNSTREAM CR45600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	26796056	3R_26796056_SNP [dm3] 3R_30970334_SNP [dm6]	T	A	5.157e^-5	0.943	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9192101	2L_9192101_SNP [dm3] 2L_9192101_SNP [dm6]	C	T	5.220e^-5	0.943	INTRON tai
2R	13628078	2R_13628078_SNP [dm3] 2R_17740573_SNP [dm6]	G	A	5.240e^-5	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	13808652	X_13808652_SNP [dm3] X_13914619_SNP [dm6]	T	C	5.250e^-5	0.943	INTRON mamo
2R	14646899	2R_14646899_SNP [dm3] 2R_18759394_SNP [dm6]	A	C	5.258e^-5	0.943	SYNONYMOUS_CODING Jabba
3L	5373981	3L_5373981_SNP [dm3] 3L_5380881_SNP [dm6]	G	A	5.268e^-5	0.943	INTRON Ir64a
X	21138053	X_21138053_SNP [dm3] X_21267026_SNP [dm6]	T	C	5.362e^-5	0.943	INTRON CG32521
3L	10775115	3L_10775115_SNP [dm3] 3L_10782015_SNP [dm6]	G	A	5.417e^-5	0.943	INTERGENIC
3R	25316616	3R_25316616_SNP [dm3] 3R_29490894_SNP [dm6]	A	G	5.455e^-5	0.943	SYNONYMOUS_CODING Spase12 UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14732064	3L_14732064_SNP [dm3] 3L_14738964_SNP [dm6]	C	T	5.478e^-5	0.943	INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17993103	3R_17993103_SNP [dm3] 3R_22167381_SNP [dm6]	G	C	5.491e^-5	0.943	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	16195018	2L_16195018_SNP [dm3] 2L_16195018_SNP [dm6]	G	A	5.509e^-5	0.943	DOWNSTREAM CR44735 EXON CR44734
2R	19791700	2R_19791700_SNP [dm3] 2R_23904177_SNP [dm6]	T	C	5.532e^-5	0.943	SYNONYMOUS_CODING CG13562 DOWNSTREAM Lpt & 1 other
3R	15843652	3R_15843652_SNP [dm3] 3R_20017930_SNP [dm6]	A	T	5.540e^-5	0.943	SYNONYMOUS_CODING CG4836 UTR_3_PRIME CG4836 DOWNSTREAM CG4433	TF binding site mE1_TFBS_cad
X	21138054	X_21138054_SNP [dm3] X_21267027_SNP [dm6]	T	C	5.577e^-5	0.943	INTRON CG32521
3R	26459341	3R_26459341_SNP [dm3] 3R_30633619_SNP [dm6]	C	T	5.630e^-5	0.943	INTERGENIC
3R	16479672	3R_16479672_SNP [dm3] 3R_20653950_SNP [dm6]	C	T	5.639e^-5	0.943	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
2R	7570166	2R_7570166_SNP [dm3] 2R_11682661_SNP [dm6]	T	C	5.659e^-5	0.943	INTRON Buffy
X	13808627	X_13808627_SNP [dm3] X_13914594_SNP [dm6]	A	G	5.791e^-5	0.943	INTRON mamo
3R	16479570	3R_16479570_SNP [dm3] 3R_20653848_SNP [dm6]	A	G	5.818e^-5	0.943	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
3L	16981484	3L_16981484_SNP [dm3] 3L_16988384_SNP [dm6]	C	T	5.830e^-5	0.943	INTRON Exn
3L	3446253	3L_3446253_SNP [dm3] 3L_3446253_SNP [dm6]	G	C	5.854e^-5	0.943	INTRON eIF5B
2L	14000232	2L_14000232_SNP [dm3] 2L_14000232_SNP [dm6]	T	A	5.868e^-5	0.943	INTRON rk
X	18368681	X_18368681_INS [dm3] X_18474648_INS [dm6]	C	CTC	5.956e^-5	0.943	INTRON CG32547
3L	1521077	3L_1521077_SNP [dm3] 3L_1521077_SNP [dm6]	A	T	5.959e^-5	0.943	INTRON Psa	TF binding site mE1_TFBS_cad
X	12780558	X_12780558_SNP [dm3] X_12886525_SNP [dm6]	A	T	5.976e^-5	0.943	INTRON Pde9
X	21138094	X_21138094_SNP [dm3] X_21267067_SNP [dm6]	G	C	5.990e^-5	0.943	INTRON CG32521
3R	16479930	3R_16479930_SNP [dm3] 3R_20654208_SNP [dm6]	T	C	6.113e^-5	0.943	SYNONYMOUS_CODING Nep4	TF binding site mE1_TFBS_cad
3L	9808652	3L_9808652_DEL [dm3] 3L_9815552_DEL [dm6]	AGGACGGT	A	6.165e^-5	0.943	UPSTREAM CG43897 INTRON CG43897
3L	9944180	3L_9944180_SNP [dm3] 3L_9951080_SNP [dm6]	T	G	6.264e^-5	0.943	INTRON CG34356
2L	20327370	2L_20327370_SNP [dm3] 2L_20327370_SNP [dm6]	G	T	6.290e^-5	0.943	INTRON spir
3L	1010434	3L_1010434_SNP [dm3] 3L_1010434_SNP [dm6]	T	C	6.323e^-5	0.943	INTRON trio
2R	9008735	2R_9008735_SNP [dm3] 2R_13121230_SNP [dm6]	G	A	6.333e^-5	0.943	INTRON CG13325
3L	18579415	3L_18579415_SNP [dm3] 3L_18586315_SNP [dm6]	A	G	6.347e^-5	0.943	INTERGENIC
3R	15864116	3R_15864116_SNP [dm3] 3R_20038394_SNP [dm6]	T	A	6.422e^-5	0.943	UTR_3_PRIME CG17193
2L	2862296	2L_2862296_SNP [dm3] 2L_2862296_SNP [dm6]	T	C	6.428e^-5	0.943	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3516409	X_3516409_SNP [dm3] X_3622376_SNP [dm6]	C	A	6.686e^-5	0.943	INTRON AstA-R1
2L	18908837	2L_18908837_SNP [dm3] 2L_18908837_SNP [dm6]	G	A	6.691e^-5	0.943	INTERGENIC
2L	2352911	2L_2352911_SNP [dm3] 2L_2352911_SNP [dm6]	A	G	6.756e^-5	0.943	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	20862484	2L_20862484_SNP [dm3] 2L_20862484_SNP [dm6]	G	A	6.890e^-5	0.943	DOWNSTREAM CR9337 INTERGENIC
2L	20862489	2L_20862489_SNP [dm3] 2L_20862489_SNP [dm6]	C	T	6.890e^-5	0.943	DOWNSTREAM CR9337 INTERGENIC
X	2825336	X_2825336_SNP [dm3] X_2931303_SNP [dm6]	C	T	6.909e^-5	0.943	SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18266856	3R_18266856_SNP [dm3] 3R_22441134_SNP [dm6]	A	G	7.098e^-5	0.943	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2R	9773420	2R_9773420_SNP [dm3] 2R_13885915_SNP [dm6]	G	A	7.102e^-5	0.943	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	10197944	2R_10197944_SNP [dm3] 2R_14310439_SNP [dm6]	C	T	7.213e^-5	0.943	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	9857508	3L_9857508_INS [dm3] 3L_9864408_INS [dm6]	A	ATTTTGGCACGCACATTATT...	7.243e^-5	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23282339	3R_23282339_SNP [dm3] 3R_27456617_SNP [dm6]	T	A	7.267e^-5	0.943	INTERGENIC
2L	20226881	2L_20226881_SNP [dm3] 2L_20226881_SNP [dm6]	C	G	7.304e^-5	0.943	INTERGENIC
2L	16374949	2L_16374949_SNP [dm3] 2L_16374949_SNP [dm6]	A	G	7.347e^-5	0.943	INTERGENIC
2R	8670991	2R_8670991_SNP [dm3] 2R_12783486_SNP [dm6]	C	T	7.392e^-5	0.943	DOWNSTREAM CR45137 INTRON sca
3R	25208548	3R_25208548_SNP [dm3] 3R_29382826_SNP [dm6]	T	C	7.421e^-5	0.943	INTRON Ptp99A
3L	11902712	3L_11902712_SNP [dm3] 3L_11909612_SNP [dm6]	G	T	7.662e^-5	0.943	INTRON CG44837
2R	8672302	2R_8672302_SNP [dm3] 2R_12784797_SNP [dm6]	G	A	7.666e^-5	0.943	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
2L	5278663	2L_5278663_SNP [dm3] 2L_5278663_SNP [dm6]	C	A	7.680e^-5	0.943	UPSTREAM Bub1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5278675	2L_5278675_SNP [dm3] 2L_5278675_SNP [dm6]	T	C	7.680e^-5	0.943	UPSTREAM Bub1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	6757066	3L_6757066_SNP [dm3] 3L_6763966_SNP [dm6]	C	A	7.697e^-5	0.943	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6757067	3L_6757067_SNP [dm3] 3L_6763967_SNP [dm6]	A	T	7.697e^-5	0.943	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3889887	3R_3889887_SNP [dm3] 3R_8064165_SNP [dm6]	C	G	7.717e^-5	0.943	INTRON mAChR-B
2R	8762985	2R_8762985_SNP [dm3] 2R_12875480_SNP [dm6]	C	T	7.783e^-5	0.943	SYNONYMOUS_CODING CG3814 UPSTREAM CG3790 DOWNSTREAM CR43469 EXON CR43468	TF binding site mE1_TFBS_cad
3R	19146846	3R_19146846_SNP [dm3] 3R_23321124_SNP [dm6]	C	G	7.841e^-5	0.943	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19920856	2L_19920856_SNP [dm3] 2L_19920856_SNP [dm6]	A	C	7.895e^-5	0.943	INTRON sick EXON CR43828
3R	17993102	3R_17993102_SNP [dm3] 3R_22167380_SNP [dm6]	T	C	7.899e^-5	0.943	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	8474796	2L_8474796_SNP [dm3] 2L_8474796_SNP [dm6]	C	T	7.948e^-5	0.943	INTRON d
3R	9585944	3R_9585944_SNP [dm3] 3R_13760222_SNP [dm6]	T	A	7.970e^-5	0.943	INTRON CG34383
3R	26796185	3R_26796185_SNP [dm3] 3R_30970463_SNP [dm6]	C	T	7.999e^-5	0.943	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26457893	3R_26457893_SNP [dm3] 3R_30632171_SNP [dm6]	G	A	8.052e^-5	0.943	INTERGENIC
X	2754122	X_2754122_SNP [dm3] X_2860089_SNP [dm6]	A	G	8.056e^-5	0.943	INTRON kirre
3L	2496787	3L_2496787_SNP [dm3] 3L_2496787_SNP [dm6]	G	A	8.071e^-5	0.943	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8670645	2R_8670645_SNP [dm3] 2R_12783140_SNP [dm6]	A	T	8.130e^-5	0.943	DOWNSTREAM CR45137 INTRON sca
2R	12269847	2R_12269847_DEL [dm3] 2R_16382342_DEL [dm6]	TT	A	8.131e^-5	0.943	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
X	12780540	X_12780540_SNP [dm3] X_12886507_SNP [dm6]	C	T	8.183e^-5	0.943	INTRON Pde9
2R	17107852	2R_17107852_SNP [dm3] 2R_21220347_SNP [dm6]	A	G	8.235e^-5	0.943	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	4002925	3L_4002925_SNP [dm3] 3L_4002925_SNP [dm6]	T	G	8.354e^-5	0.943	UPSTREAM CG14985 INTERGENIC
3R	3020147	3R_3020147_SNP [dm3] 3R_7194425_SNP [dm6]	A	C	8.482e^-5	0.943	NON_SYNONYMOUS_CODING lap INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3889962	3R_3889962_SNP [dm3] 3R_8064240_SNP [dm6]	T	C	8.525e^-5	0.943	INTRON mAChR-B
3R	17765912	3R_17765912_SNP [dm3] 3R_21940190_SNP [dm6]	T	G	8.530e^-5	0.943	INTERGENIC
2R	10002994	2R_10002994_SNP [dm3] 2R_14115489_SNP [dm6]	A	G	8.611e^-5	0.943	INTRON Prosap
3L	1401115	3L_1401115_SNP [dm3] 3L_1401115_SNP [dm6]	A	G	8.626e^-5	0.943	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	17916545	3L_17916545_INS [dm3] 3L_17923445_INS [dm6]	A	ATCTCTTGAAATAACG...	8.643e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8660381	3L_8660381_SNP [dm3] 3L_8667281_SNP [dm6]	C	T	8.755e^-5	0.943	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	20327457	2L_20327457_SNP [dm3] 2L_20327457_SNP [dm6]	A	T	8.824e^-5	0.943	INTRON spir
2L	8808615	2L_8808615_DEL [dm3] 2L_8808615_DEL [dm6]	TAC	GT	8.889e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1010418	3L_1010418_SNP [dm3] 3L_1010418_SNP [dm6]	G	T	8.922e^-5	0.943	INTRON trio
2R	7437206	2R_7437206_SNP [dm3] 2R_11549701_SNP [dm6]	A	T	8.997e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	10828521	X_10828521_SNP [dm3] X_10934488_SNP [dm6]	G	T	9.003e^-5	0.943	INTRON Myo10A
X	10829665	X_10829665_SNP [dm3] X_10935632_SNP [dm6]	C	T	9.003e^-5	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2242989	3L_2242989_SNP [dm3] 3L_2242989_SNP [dm6]	C	A	9.025e^-5	0.943	SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD	TF binding site mE1_TFBS_chinmo
2L	12643189	2L_12643189_SNP [dm3] 2L_12643189_SNP [dm6]	T	A	9.264e^-5	0.943	INTRON Ref2
2L	19923303	2L_19923303_SNP [dm3] 2L_19923303_SNP [dm6]	C	G	9.383e^-5	0.943	INTRON sick EXON CR43827
2R	15430575	2R_15430575_SNP [dm3] 2R_19543070_SNP [dm6]	A	G	9.384e^-5	0.943	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20403389	2L_20403389_SNP [dm3] 2L_20403389_SNP [dm6]	T	G	9.401e^-5	0.943	INTRON CG10947
2L	20855619	2L_20855619_SNP [dm3] 2L_20855619_SNP [dm6]	G	C	9.498e^-5	0.943	INTRON twit
3R	6540465	3R_6540465_SNP [dm3] 3R_10714743_SNP [dm6]	T	C	9.570e^-5	0.943	UPSTREAM CG4073 INTERGENIC
X	21138277	X_21138277_SNP [dm3] X_21267250_SNP [dm6]	G	T	9.600e^-5	0.943	INTRON CG32521
2R	10002982	2R_10002982_DEL [dm3] 2R_14115477_DEL [dm6]	ACAGCTA	A	9.601e^-5	0.943	INTRON Prosap
3L	5688790	3L_5688790_SNP [dm3] 3L_5695690_SNP [dm6]	C	T	9.802e^-5	0.943	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	8757248	3L_8757248_SNP [dm3] 3L_8764148_SNP [dm6]	A	G	9.833e^-5	0.943	INTRON Fhos
3L	4349309	3L_4349309_SNP [dm3] 3L_4349309_SNP [dm6]	C	A	9.846e^-5	0.943	INTRON Cip4
X	11629575	X_11629575_SNP [dm3] X_11735542_SNP [dm6]	G	T	9.914e^-5	0.943	SYNONYMOUS_CODING CG15221
3R	23112199	3R_23112199_SNP [dm3] 3R_27286477_SNP [dm6]	A	G	9.998e^-5	0.943	NON_SYNONYMOUS_CODING CG3368 DOWNSTREAM bigmax	TF binding site mE1_TFBS_chinmo
2L	18297023	2L_18297023_SNP [dm3] 2L_18297023_SNP [dm6]	T	G	1.008e^-4	0.943	NON_SYNONYMOUS_CODING CG5790
3L	1734378	3L_1734378_SNP [dm3] 3L_1734378_SNP [dm6]	A	G	1.010e^-4	0.943	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7417491	2R_7417491_SNP [dm3] 2R_11529986_SNP [dm6]	T	C	1.013e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2L	8808569	2L_8808569_SNP [dm3] 2L_8808569_SNP [dm6]	C	T	1.039e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11349585	3L_11349585_DEL [dm3] 3L_11356485_DEL [dm6]	GT	G	1.041e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18909581	2L_18909581_SNP [dm3] 2L_18909581_SNP [dm6]	T	G	1.042e^-4	0.943	INTERGENIC
2L	19923203	2L_19923203_SNP [dm3] 2L_19923203_SNP [dm6]	C	T	1.045e^-4	0.943	INTRON sick & 1 other EXON CR43827
X	20746153	X_20746153_SNP [dm3] X_20875126_SNP [dm6]	A	G	1.050e^-4	0.943	INTRON shakB EXON CR11235
2R	8672370	2R_8672370_SNP [dm3] 2R_12784865_SNP [dm6]	A	G	1.054e^-4	0.943	INTRON sca & 1 other	regulatory region REDfly_CRMs
3L	9648727	3L_9648727_SNP [dm3] 3L_9655627_SNP [dm6]	A	G	1.057e^-4	0.943	INTRON fry & 1 other
2L	5905689	2L_5905689_SNP [dm3] 2L_5905689_SNP [dm6]	C	T	1.069e^-4	0.943	UPSTREAM CG9021 EXON CR43808
2L	8808597	2L_8808597_SNP [dm3] 2L_8808597_SNP [dm6]	T	G	1.077e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7989223	2R_7989223_SNP [dm3] 2R_12101718_SNP [dm6]	C	G	1.112e^-4	0.943	INTRON jeb	TF binding site mE1_TFBS_Trl
2L	14051060	2L_14051060_SNP [dm3] 2L_14051060_SNP [dm6]	T	A	1.122e^-4	0.943	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3898541	3R_3898541_SNP [dm3] 3R_8072819_SNP [dm6]	C	A	1.129e^-4	0.943	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
3R	6299469	3R_6299469_SNP [dm3] 3R_10473747_SNP [dm6]	A	C	1.150e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20829094	2L_20829094_INS [dm3] 2L_20829094_INS [dm6]	T	TTGTTATATAGGCTTAGGCA...	1.164e^-4	0.943	UPSTREAM CG31673 INTERGENIC
X	15588392	X_15588392_SNP [dm3] X_15694359_SNP [dm6]	C	A	1.170e^-4	0.943	UPSTREAM CR45524 EXON CR45526	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11041767	X_11041767_SNP [dm3] X_11147734_SNP [dm6]	C	T	1.172e^-4	0.943	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18715353	X_18715353_DEL [dm3] X_18821320_DEL [dm6]	ACCTGG	CA	1.174e^-4	0.943	SPLICE_SITE_REGION CG42450 INTRON CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8808763	2L_8808763_SNP [dm3] 2L_8808763_SNP [dm6]	T	C	1.180e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16755286	3L_16755286_SNP [dm3] 3L_16762186_SNP [dm6]	C	T	1.186e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3446266	3L_3446266_SNP [dm3] 3L_3446266_SNP [dm6]	C	T	1.193e^-4	0.943	INTRON eIF5B
2R	7570094	2R_7570094_SNP [dm3] 2R_11682589_SNP [dm6]	T	G	1.198e^-4	0.943	INTRON Buffy
3L	11902727	3L_11902727_SNP [dm3] 3L_11909627_SNP [dm6]	T	A	1.205e^-4	0.943	INTRON CG44837
X	6505360	X_6505360_SNP [dm3] X_6611327_SNP [dm6]	A	G	1.216e^-4	0.943	INTRON pigs
3L	619955	3L_619955_SNP [dm3] 3L_619955_SNP [dm6]	A	G	1.227e^-4	0.943	DOWNSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17120613	2R_17120613_SNP [dm3] 2R_21233108_SNP [dm6]	C	T	1.235e^-4	0.943	INTRON ASPP
3L	14690911	3L_14690911_SNP [dm3] 3L_14697811_SNP [dm6]	C	T	1.258e^-4	0.943	SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
2R	16826418	2R_16826418_SNP [dm3] 2R_20938913_SNP [dm6]	A	G	1.270e^-4	0.943	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_zfh1
X	19690105	X_19690105_SNP [dm3] X_19796072_SNP [dm6]	C	T	1.270e^-4	0.943	INTERGENIC
2R	7570086	2R_7570086_DEL [dm3] 2R_11682581_DEL [dm6]	GTT	A	1.271e^-4	0.943	INTRON Buffy
2R	7570091	2R_7570091_SNP [dm3] 2R_11682586_SNP [dm6]	A	T	1.271e^-4	0.943	INTRON Buffy
3R	16101062	3R_16101062_DEL [dm3] 3R_20275340_DEL [dm6]	CGCCTACTGGCG...	C	1.277e^-4	0.943	INTRON cic
2R	13767014	2R_13767014_SNP [dm3] 2R_17879509_SNP [dm6]	T	A	1.287e^-4	0.943	NON_SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk
3R	15854834	3R_15854834_DEL [dm3] 3R_20029112_DEL [dm6]	ATTAA	TG	1.289e^-4	0.943	DOWNSTREAM trem INTRON CG4854
X	13808571	X_13808571_SNP [dm3] X_13914538_SNP [dm6]	T	G	1.293e^-4	0.943	INTRON mamo
3R	25675208	3R_25675208_SNP [dm3] 3R_29849486_SNP [dm6]	T	A	1.298e^-4	0.943	INTRON Cad99C	TF binding site mE1_TFBS_cad
2R	10425822	2R_10425822_SNP [dm3] 2R_14538317_SNP [dm6]	T	C	1.307e^-4	0.943	INTRON ttv
X	21137943	X_21137943_SNP [dm3] X_21266916_SNP [dm6]	T	A	1.309e^-4	0.943	INTRON CG32521
3L	6278160	3L_6278160_SNP [dm3] 3L_6285060_SNP [dm6]	C	T	1.311e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6278181	3L_6278181_SNP [dm3] 3L_6285081_SNP [dm6]	A	T	1.311e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16101651	3R_16101651_INS [dm3] 3R_20275929_INS [dm6]	C	CCCCC	1.315e^-4	0.943	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5688976	3L_5688976_SNP [dm3] 3L_5695876_SNP [dm6]	T	G	1.316e^-4	0.943	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	3444760	X_3444760_SNP [dm3] X_3550727_SNP [dm6]	T	C	1.321e^-4	0.943	INTRON CG32791
3L	1191092	3L_1191092_SNP [dm3] 3L_1191092_SNP [dm6]	T	C	1.330e^-4	0.943	SYNONYMOUS_CODING Trh DOWNSTREAM CG13912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6137255	3L_6137255_SNP [dm3] 3L_6144155_SNP [dm6]	C	T	1.339e^-4	0.943	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3R	19146828	3R_19146828_SNP [dm3] 3R_23321106_SNP [dm6]	T	C	1.342e^-4	0.943	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22491399	3R_22491399_SNP [dm3] 3R_26665677_SNP [dm6]	A	G	1.350e^-4	0.943	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2R	10172032	2R_10172032_INS [dm3] 2R_14284527_INS [dm6]	T	TATGCACCACT...	1.355e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20494420	3L_20494420_SNP [dm3] 3L_20501320_SNP [dm6]	T	C	1.360e^-4	0.943	SYNONYMOUS_CODING CG18281 INTRON CG32425
X	15588437	X_15588437_SNP [dm3] X_15694404_SNP [dm6]	G	A	1.360e^-4	0.943	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15918537	3L_15918537_SNP [dm3] 3L_15925437_SNP [dm6]	C	T	1.381e^-4	0.943	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6982015	2R_6982015_INS [dm3] 2R_11094510_INS [dm6]	T	TT	1.382e^-4	0.943	INTRON luna	TF binding site mE1_TFBS_sens
2L	4252088	2L_4252088_SNP [dm3] 2L_4252088_SNP [dm6]	C	G	1.384e^-4	0.943	INTERGENIC
2R	7570172	2R_7570172_SNP [dm3] 2R_11682667_SNP [dm6]	T	C	1.393e^-4	0.943	INTRON Buffy
2R	14891363	2R_14891363_SNP [dm3] 2R_19003858_SNP [dm6]	A	T	1.393e^-4	0.943	DOWNSTREAM tn INTRON tn
X	8563109	X_8563109_INS [dm3] X_8669076_INS [dm6]	T	TCGGGAAT	1.396e^-4	0.943	INTERGENIC
3R	15854878	3R_15854878_SNP [dm3] 3R_20029156_SNP [dm6]	T	A	1.403e^-4	0.943	DOWNSTREAM trem INTRON CG4854
3R	15448189	3R_15448189_SNP [dm3] 3R_19622467_SNP [dm6]	C	T	1.404e^-4	0.943	INTRON CG6231
X	21137968	X_21137968_SNP [dm3] X_21266941_SNP [dm6]	A	C	1.409e^-4	0.943	INTRON CG32521
3L	1700239	3L_1700239_SNP [dm3] 3L_1700239_SNP [dm6]	C	T	1.411e^-4	0.943	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9650278	3L_9650278_SNP [dm3] 3L_9657178_SNP [dm6]	C	G	1.413e^-4	0.943	INTRON fry & 1 other
X	12156128	X_12156128_DEL [dm3] X_12262095_DEL [dm6]	ACAC	GA	1.413e^-4	0.943	INTRON Ten-a
2L	16374908	2L_16374908_SNP [dm3] 2L_16374908_SNP [dm6]	A	G	1.414e^-4	0.943	INTERGENIC
2L	16374911	2L_16374911_SNP [dm3] 2L_16374911_SNP [dm6]	G	A	1.414e^-4	0.943	INTERGENIC
2L	3861634	2L_3861634_SNP [dm3] 2L_3861634_SNP [dm6]	A	C	1.418e^-4	0.943	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	1560610	3L_1560610_SNP [dm3] 3L_1560610_SNP [dm6]	A	C	1.418e^-4	0.943	NON_SYNONYMOUS_CODING CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv
X	21137922	X_21137922_SNP [dm3] X_21266895_SNP [dm6]	C	T	1.420e^-4	0.943	INTRON CG32521
3L	14728075	3L_14728075_SNP [dm3] 3L_14734975_SNP [dm6]	C	A	1.429e^-4	0.943	INTRON ome	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21965537	3R_21965537_SNP [dm3] 3R_26139815_SNP [dm6]	C	G	1.444e^-4	0.943	INTERGENIC
3L	9644105	3L_9644105_SNP [dm3] 3L_9651005_SNP [dm6]	T	C	1.444e^-4	0.943	NON_SYNONYMOUS_CODING CG33696 INTRON fry
3L	9857487	3L_9857487_SNP [dm3] 3L_9864387_SNP [dm6]	A	T	1.447e^-4	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9857490	3L_9857490_SNP [dm3] 3L_9864390_SNP [dm6]	G	A	1.447e^-4	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9857494	3L_9857494_SNP [dm3] 3L_9864394_SNP [dm6]	G	A	1.447e^-4	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6051480	2L_6051480_DEL [dm3] 2L_6051480_DEL [dm6]	TTCCT	T	1.448e^-4	0.943	INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	21137929	X_21137929_SNP [dm3] X_21266902_SNP [dm6]	T	A	1.448e^-4	0.943	INTRON CG32521
3R	10547790	3R_10547790_SNP [dm3] 3R_14722068_SNP [dm6]	C	T	1.448e^-4	0.943	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20849556	2L_20849556_SNP [dm3] 2L_20849556_SNP [dm6]	G	C	1.453e^-4	0.943	SYNONYMOUS_CODING CG14402 DOWNSTREAM CG31676
3L	9644170	3L_9644170_SNP [dm3] 3L_9651070_SNP [dm6]	G	A	1.455e^-4	0.943	SYNONYMOUS_CODING CG33696 INTRON fry
3L	3463181	3L_3463181_SNP [dm3] 3L_3463181_SNP [dm6]	A	C	1.470e^-4	0.943	NON_SYNONYMOUS_CODING armi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19839952	2L_19839952_SNP [dm3] 2L_19839952_SNP [dm6]	A	G	1.472e^-4	0.943	INTRON sick
3R	19733922	3R_19733922_SNP [dm3] 3R_23908200_SNP [dm6]	T	C	1.475e^-4	0.943	INTRON sba
3R	19081653	3R_19081653_SNP [dm3] 3R_23255931_SNP [dm6]	C	T	1.493e^-4	0.943	SYNONYMOUS_CODING wda DOWNSTREAM EloA	TF binding site mE1_TFBS_cad
2R	3554659	2R_3554659_SNP [dm3] 2R_7667154_SNP [dm6]	C	T	1.508e^-4	0.943	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
3L	8603790	3L_8603790_SNP [dm3] 3L_8610690_SNP [dm6]	A	G	1.518e^-4	0.943	INTRON CG6282
2L	16197268	2L_16197268_SNP [dm3] 2L_16197268_SNP [dm6]	G	A	1.519e^-4	0.943	INTERGENIC
3R	20814502	3R_20814502_SNP [dm3] 3R_24988780_SNP [dm6]	T	A	1.529e^-4	0.943	INTRON tnc
2L	8349880	2L_8349880_SNP [dm3] 2L_8349880_SNP [dm6]	C	T	1.530e^-4	0.943	SYNONYMOUS_CODING CG7778
X	20558061	X_20558061_DEL [dm3] X_20687034_DEL [dm6]	CA	T	1.532e^-4	0.943	EXON CR43862	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	6278162	3L_6278162_SNP [dm3] 3L_6285062_SNP [dm6]	A	C	1.537e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6845810	2L_6845810_SNP [dm3] 2L_6845810_SNP [dm6]	G	C	1.540e^-4	0.943	INTERGENIC
2R	4967534	2R_4967534_SNP [dm3] 2R_9080029_SNP [dm6]	T	G	1.552e^-4	0.943	INTRON CG8083
2R	3577339	2R_3577339_SNP [dm3] 2R_7689834_SNP [dm6]	G	A	1.567e^-4	0.943	INTRON CG1399
3L	20034562	3L_20034562_SNP [dm3] 3L_20041462_SNP [dm6]	C	A	1.568e^-4	0.943	INTERGENIC
2R	3554652	2R_3554652_SNP [dm3] 2R_7667147_SNP [dm6]	C	T	1.570e^-4	0.943	NON_SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
2R	17730893	2R_17730893_SNP [dm3] 2R_21843388_SNP [dm6]	T	A	1.577e^-4	0.943	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	615617	3L_615617_SNP [dm3] 3L_615617_SNP [dm6]	G	T	1.581e^-4	0.943	DOWNSTREAM CR42719 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	11781087	X_11781087_SNP [dm3] X_11887054_SNP [dm6]	T	A	1.584e^-4	0.943	SPLICE_SITE_ACCEPTOR CG10353 START_GAINED CG10353 UTR_5_PRIME CG10353 UPSTREAM SelG INTRON CG10353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	19925334	2L_19925334_SNP [dm3] 2L_19925334_SNP [dm6]	C	T	1.586e^-4	0.943	INTRON sick	TF binding site mE1_TFBS_chinmo
X	13481047	X_13481047_SNP [dm3] X_13587014_SNP [dm6]	C	T	1.586e^-4	0.943	INTRON Tango13
3L	15698630	3L_15698630_DEL [dm3] 3L_15705530_DEL [dm6]	AGGAA	A	1.593e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_cad
X	21282426	X_21282426_SNP [dm3] X_21411399_SNP [dm6]	G	A	1.596e^-4	0.943	UPSTREAM CR45003 INTERGENIC
2R	9637329	2R_9637329_SNP [dm3] 2R_13749824_SNP [dm6]	A	G	1.596e^-4	0.943	DOWNSTREAM fas INTERGENIC
2R	7570177	2R_7570177_SNP [dm3] 2R_11682672_SNP [dm6]	C	G	1.606e^-4	0.943	INTRON Buffy
2L	3419958	2L_3419958_SNP [dm3] 2L_3419958_SNP [dm6]	G	C	1.614e^-4	0.943	INTRON pgant2
X	13792772	X_13792772_SNP [dm3] X_13898739_SNP [dm6]	A	T	1.623e^-4	0.943	INTRON mamo
3R	21966323	3R_21966323_SNP [dm3] 3R_26140601_SNP [dm6]	T	G	1.636e^-4	0.943	INTERGENIC
2L	20335127	2L_20335127_SNP [dm3] 2L_20335127_SNP [dm6]	C	T	1.648e^-4	0.943	INTRON spir
X	20436947	X_20436947_SNP [dm3] X_20565920_SNP [dm6]	C	T	1.652e^-4	0.943	SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19182263	3R_19182263_SNP [dm3] 3R_23356541_SNP [dm6]	A	G	1.654e^-4	0.943	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19182286	3R_19182286_SNP [dm3] 3R_23356564_SNP [dm6]	A	C	1.654e^-4	0.943	UTR_5_PRIME Sec13 UPSTREAM ATPsyn-Cf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8808761	2L_8808761_SNP [dm3] 2L_8808761_SNP [dm6]	A	C	1.654e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15446150	3R_15446150_SNP [dm3] 3R_19620428_SNP [dm6]	T	A	1.665e^-4	0.943	INTRON CG6231
2L	2352932	2L_2352932_SNP [dm3] 2L_2352932_SNP [dm6]	T	G	1.674e^-4	0.943	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2862126	2L_2862126_MNP [dm3] 2L_2862126_MNP [dm6]	AAA	GCC	1.678e^-4	0.943	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6757061	3L_6757061_INS [dm3] 3L_6763961_INS [dm6]	T	TGAGTG	1.678e^-4	0.943	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8808752	2L_8808752_SNP [dm3] 2L_8808752_SNP [dm6]	C	A	1.681e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10171765	2R_10171765_SNP [dm3] 2R_14284260_SNP [dm6]	C	A	1.684e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad
3L	3028846	3L_3028846_SNP [dm3] 3L_3028846_SNP [dm6]	G	T	1.687e^-4	0.943	INTERGENIC
2R	14891481	2R_14891481_SNP [dm3] 2R_19003976_SNP [dm6]	A	T	1.690e^-4	0.943	DOWNSTREAM tn INTRON tn
3R	6512455	3R_6512455_SNP [dm3] 3R_10686733_SNP [dm6]	C	A	1.695e^-4	0.943	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	19219890	3L_19219890_SNP [dm3] 3L_19226790_SNP [dm6]	T	C	1.699e^-4	0.943	INTRON fz2
3L	11902656	3L_11902656_SNP [dm3] 3L_11909556_SNP [dm6]	C	T	1.702e^-4	0.943	INTRON CG44837
3R	23002999	3R_23002999_SNP [dm3] 3R_27177277_SNP [dm6]	G	A	1.702e^-4	0.943	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9298405	X_9298405_SNP [dm3] X_9404372_SNP [dm6]	C	T	1.705e^-4	0.943	INTRON mgl
X	20746198	X_20746198_SNP [dm3] X_20875171_SNP [dm6]	T	G	1.711e^-4	0.943	INTRON shakB EXON CR11235
2R	9773409	2R_9773409_SNP [dm3] 2R_13885904_SNP [dm6]	G	A	1.728e^-4	0.943	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	4029423	2L_4029423_SNP [dm3] 2L_4029423_SNP [dm6]	A	G	1.730e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3446277	3L_3446277_SNP [dm3] 3L_3446277_SNP [dm6]	A	T	1.736e^-4	0.943	INTRON eIF5B
2R	10085901	2R_10085901_SNP [dm3] 2R_14198396_SNP [dm6]	C	T	1.739e^-4	0.943	DOWNSTREAM VGAT & 1 other INTERGENIC
3R	25316734	3R_25316734_SNP [dm3] 3R_29491012_SNP [dm6]	T	C	1.747e^-4	0.943	UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15854864	3R_15854864_SNP [dm3] 3R_20029142_SNP [dm6]	A	T	1.749e^-4	0.943	DOWNSTREAM trem INTRON CG4854
2R	10197920	2R_10197920_SNP [dm3] 2R_14310415_SNP [dm6]	G	C	1.757e^-4	0.943	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	8808674	2L_8808674_SNP [dm3] 2L_8808674_SNP [dm6]	G	A	1.757e^-4	0.943	INTERGENIC
2L	19923104	2L_19923104_SNP [dm3] 2L_19923104_SNP [dm6]	G	A	1.766e^-4	0.943	INTRON sick & 1 other EXON CR43827
2R	10679520	2R_10679520_SNP [dm3] 2R_14792015_SNP [dm6]	G	A	1.773e^-4	0.943	INTRON kn	TF binding site BDTNP1_TFBS_twi
2R	15390527	2R_15390527_SNP [dm3] 2R_19503022_SNP [dm6]	T	A	1.783e^-4	0.943	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1524151	3L_1524151_SNP [dm3] 3L_1524151_SNP [dm6]	G	A	1.794e^-4	0.943	DOWNSTREAM Psa INTRON CG12090
3L	16270499	3L_16270499_SNP [dm3] 3L_16277399_SNP [dm6]	G	T	1.794e^-4	0.943	UPSTREAM CG13065 INTERGENIC	TF binding site mE1_TFBS_cad
X	21137946	X_21137946_SNP [dm3] X_21266919_SNP [dm6]	A	T	1.795e^-4	0.943	INTRON CG32521
2R	7570099	2R_7570099_DEL [dm3] 2R_11682594_DEL [dm6]	TC	T	1.811e^-4	0.943	INTRON Buffy
2L	20609116	2L_20609116_SNP [dm3] 2L_20609116_SNP [dm6]	G	T	1.812e^-4	0.943	INTRON CR44909
3R	15855398	3R_15855398_SNP [dm3] 3R_20029676_SNP [dm6]	G	C	1.823e^-4	0.943	NON_SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8672505	2L_8672505_SNP [dm3] 2L_8672505_SNP [dm6]	C	A	1.823e^-4	0.943	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
2L	6241412	2L_6241412_SNP [dm3] 2L_6241412_SNP [dm6]	A	G	1.824e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	17642784	3R_17642784_SNP [dm3] 3R_21817062_SNP [dm6]	T	A	1.842e^-4	0.943	INTRON CASK
2L	16374918	2L_16374918_SNP [dm3] 2L_16374918_SNP [dm6]	T	G	1.845e^-4	0.943	INTERGENIC
X	13792723	X_13792723_SNP [dm3] X_13898690_SNP [dm6]	A	G	1.847e^-4	0.943	INTRON mamo
X	21137961	X_21137961_DEL [dm3] X_21266934_DEL [dm6]	GGTAGG	T	1.852e^-4	0.943	INTRON CG32521
3R	22551340	3R_22551340_SNP [dm3] 3R_26725618_SNP [dm6]	C	A	1.861e^-4	0.943	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
X	19685298	X_19685298_SNP [dm3] X_19791265_SNP [dm6]	G	A	1.872e^-4	0.943	INTERGENIC
3R	15854805	3R_15854805_SNP [dm3] 3R_20029083_SNP [dm6]	T	C	1.878e^-4	0.943	DOWNSTREAM trem INTRON CG4854
2R	11936645	2R_11936645_SNP [dm3] 2R_16049140_SNP [dm6]	A	G	1.885e^-4	0.943	SYNONYMOUS_CODING CG8405
3L	10246965	3L_10246965_SNP [dm3] 3L_10253865_SNP [dm6]	G	A	1.900e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3668669	3L_3668669_SNP [dm3] 3L_3668669_SNP [dm6]	C	G	1.905e^-4	0.943	INTERGENIC
2R	17730876	2R_17730876_SNP [dm3] 2R_21843371_SNP [dm6]	C	G	1.913e^-4	0.943	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10413528	2L_10413528_SNP [dm3] 2L_10413528_SNP [dm6]	C	T	1.913e^-4	0.943	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	10613025	3L_10613025_SNP [dm3] 3L_10619925_SNP [dm6]	T	C	1.917e^-4	0.943	INTERGENIC
2L	18563685	2L_18563685_SNP [dm3] 2L_18563685_SNP [dm6]	C	A	1.919e^-4	0.943	UPSTREAM Pde11 INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	1080223	3L_1080223_SNP [dm3] 3L_1080223_SNP [dm6]	C	G	1.922e^-4	0.943	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4202075	X_4202075_SNP [dm3] X_4308042_SNP [dm6]	T	A	1.930e^-4	0.943	INTERGENIC
3R	24820134	3R_24820134_SNP [dm3] 3R_28994412_SNP [dm6]	T	G	1.934e^-4	0.943	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15854802	3R_15854802_SNP [dm3] 3R_20029080_SNP [dm6]	A	G	1.948e^-4	0.943	DOWNSTREAM trem INTRON CG4854
2R	6981959	2R_6981959_SNP [dm3] 2R_11094454_SNP [dm6]	T	C	1.950e^-4	0.943	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	10401408	X_10401408_SNP [dm3] X_10507375_SNP [dm6]	G	C	1.962e^-4	0.943	INTRON spri
3R	16861260	3R_16861260_SNP [dm3] 3R_21035538_SNP [dm6]	C	G	1.963e^-4	0.943	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13252650	3R_13252650_INS [dm3] 3R_17426928_INS [dm6]	G	GAATGC	1.972e^-4	0.943	INTRON CG5873
3L	1192482	3L_1192482_SNP [dm3] 3L_1192482_SNP [dm6]	T	A	1.997e^-4	0.943	INTRON Trh	TF binding site mE1_TFBS_chinmo
3L	1192500	3L_1192500_SNP [dm3] 3L_1192500_SNP [dm6]	G	A	1.997e^-4	0.943	INTRON Trh	TF binding site mE1_TFBS_chinmo
2L	16397262	2L_16397262_SNP [dm3] 2L_16397262_SNP [dm6]	C	G	1.998e^-4	0.943	INTERGENIC
3R	19182822	3R_19182822_SNP [dm3] 3R_23357100_SNP [dm6]	C	A	1.998e^-4	0.943	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22783441	3R_22783441_SNP [dm3] 3R_26957719_SNP [dm6]	G	T	1.999e^-4	0.943	INTRON CG6330
3L	11633509	3L_11633509_SNP [dm3] 3L_11640409_SNP [dm6]	A	C	1.999e^-4	0.943	INTRON CG32091
2R	7570096	2R_7570096_DEL [dm3] 2R_11682591_DEL [dm6]	TG	T	2.011e^-4	0.943	INTRON Buffy
2L	8808583	2L_8808583_SNP [dm3] 2L_8808583_SNP [dm6]	C	G	2.015e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	11237440	3R_11237440_SNP [dm3] 3R_15411718_SNP [dm6]	T	C	2.021e^-4	0.943	INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4978623	2R_4978623_SNP [dm3] 2R_9091118_SNP [dm6]	T	C	2.027e^-4	0.943	INTRON CG8080
2L	9912976	2L_9912976_SNP [dm3] 2L_9912976_SNP [dm6]	G	A	2.028e^-4	0.943	UTR_5_PRIME Srp54 UPSTREAM Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16233225	2L_16233225_SNP [dm3] 2L_16233225_SNP [dm6]	A	T	2.030e^-4	0.943	INTRON CG42817
3R	19023198	3R_19023198_SNP [dm3] 3R_23197476_SNP [dm6]	C	T	2.040e^-4	0.943	SYNONYMOUS_CODING cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18072684	2R_18072684_SNP [dm3] 2R_22185179_SNP [dm6]	T	C	2.041e^-4	0.943	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15174877	2R_15174877_SNP [dm3] 2R_19287372_SNP [dm6]	T	A	2.047e^-4	0.943	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5374712	3L_5374712_DEL [dm3] 3L_5381612_DEL [dm6]	AAT	A	2.049e^-4	0.943	INTRON Ir64a
2L	19934259	2L_19934259_SNP [dm3] 2L_19934259_SNP [dm6]	C	G	2.054e^-4	0.943	UPSTREAM sick INTRON sick EXON CR45183	TF binding site BDTNP1_TFBS_dl
2R	7417128	2R_7417128_SNP [dm3] 2R_11529623_SNP [dm6]	T	C	2.057e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	3444804	X_3444804_DEL [dm3] X_3550771_DEL [dm6]	CTA	C	2.058e^-4	0.943	INTRON CG32791
3L	20268861	3L_20268861_SNP [dm3] 3L_20275761_SNP [dm6]	A	T	2.063e^-4	0.943	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1389049	3L_1389049_SNP [dm3] 3L_1389049_SNP [dm6]	G	C	2.064e^-4	0.943	INTRON Ptp61F
3L	1560611	3L_1560611_SNP [dm3] 3L_1560611_SNP [dm6]	G	C	2.071e^-4	0.943	NON_SYNONYMOUS_CODING CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv
2L	17921021	2L_17921021_SNP [dm3] 2L_17921021_SNP [dm6]	G	A	2.071e^-4	0.943	INTERGENIC
3R	25706700	3R_25706700_SNP [dm3] 3R_29880978_SNP [dm6]	C	T	2.073e^-4	0.943	INTRON CG31038
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	2.079e^-4	0.943	INTRON baz
X	13481042	X_13481042_SNP [dm3] X_13587009_SNP [dm6]	G	A	2.094e^-4	0.943	INTRON Tango13
3L	6874096	3L_6874096_SNP [dm3] 3L_6880996_SNP [dm6]	A	T	2.095e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13765267	3R_13765267_SNP [dm3] 3R_17939545_SNP [dm6]	T	G	2.101e^-4	0.943	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13765300	3R_13765300_SNP [dm3] 3R_17939578_SNP [dm6]	T	C	2.101e^-4	0.943	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6504666	3R_6504666_SNP [dm3] 3R_10678944_SNP [dm6]	G	A	2.103e^-4	0.943	SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo
3R	15854656	3R_15854656_SNP [dm3] 3R_20028934_SNP [dm6]	G	T	2.108e^-4	0.943	SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1723283	3L_1723283_SNP [dm3] 3L_1723283_SNP [dm6]	T	G	2.114e^-4	0.943	UPSTREAM CG18171 INTRON drpr
2L	7619706	2L_7619706_SNP [dm3] 2L_7619706_SNP [dm6]	T	A	2.121e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	13656456	3R_13656456_SNP [dm3] 3R_17830734_SNP [dm6]	A	T	2.122e^-4	0.943	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9857485	3L_9857485_SNP [dm3] 3L_9864385_SNP [dm6]	C	G	2.126e^-4	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7636873	2L_7636873_SNP [dm3] 2L_7636873_SNP [dm6]	T	C	2.126e^-4	0.943	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6837668	2L_6837668_SNP [dm3] 2L_6837668_SNP [dm6]	A	T	2.130e^-4	0.943	INTRON sens-2
3R	19146841	3R_19146841_SNP [dm3] 3R_23321119_SNP [dm6]	A	G	2.131e^-4	0.943	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22783344	3R_22783344_SNP [dm3] 3R_26957622_SNP [dm6]	A	T	2.134e^-4	0.943	INTRON CG6330
3L	9647546	3L_9647546_SNP [dm3] 3L_9654446_SNP [dm6]	C	A	2.143e^-4	0.943	INTRON fry & 1 other
2L	6845808	2L_6845808_SNP [dm3] 2L_6845808_SNP [dm6]	T	A	2.158e^-4	0.943	INTERGENIC
2L	5074687	2L_5074687_SNP [dm3] 2L_5074687_SNP [dm6]	T	A	2.160e^-4	0.943	INTRON pgant5
2L	2594807	2L_2594807_SNP [dm3] 2L_2594807_SNP [dm6]	A	T	2.162e^-4	0.943	INTERGENIC
3L	3440486	3L_3440486_SNP [dm3] 3L_3440486_SNP [dm6]	C	G	2.165e^-4	0.943	INTRON eIF5B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3146727	2R_3146727_SNP [dm3] 2R_7259222_SNP [dm6]	T	A	2.168e^-4	0.943	SYNONYMOUS_CODING CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26965814	3R_26965814_SNP [dm3] 3R_31140092_SNP [dm6]	G	T	2.168e^-4	0.943	INTRON Gycbeta100B
3R	24121757	3R_24121757_INS [dm3] 3R_28296035_INS [dm6]	T	TT	2.169e^-4	0.943	UPSTREAM CR44229 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15852391	3R_15852391_SNP [dm3] 3R_20026669_SNP [dm6]	A	G	2.177e^-4	0.943	SYNONYMOUS_CODING CG4424 DOWNSTREAM psidin
3R	7310534	3R_7310534_SNP [dm3] 3R_11484812_SNP [dm6]	G	T	2.194e^-4	0.943	INTERGENIC
3L	16899398	3L_16899398_SNP [dm3] 3L_16906298_SNP [dm6]	T	C	2.198e^-4	0.943	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12780621	X_12780621_SNP [dm3] X_12886588_SNP [dm6]	A	G	2.203e^-4	0.943	INTRON Pde9
3R	3127313	3R_3127313_SNP [dm3] 3R_7301591_SNP [dm6]	G	A	2.215e^-4	0.943	INTRON rn
X	12155878	X_12155878_DEL [dm3] X_12261845_DEL [dm6]	TCC	T	2.223e^-4	0.943	INTRON Ten-a
2R	6464833	2R_6464833_SNP [dm3] 2R_10577328_SNP [dm6]	A	C	2.230e^-4	0.943	INTRON psq
3R	15858913	3R_15858913_SNP [dm3] 3R_20033191_SNP [dm6]	C	T	2.233e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3R	15858945	3R_15858945_SNP [dm3] 3R_20033223_SNP [dm6]	G	A	2.233e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3R	15858956	3R_15858956_SNP [dm3] 3R_20033234_SNP [dm6]	A	C	2.233e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
2L	16374905	2L_16374905_SNP [dm3] 2L_16374905_SNP [dm6]	A	C	2.233e^-4	0.943	INTERGENIC
3R	16115579	3R_16115579_SNP [dm3] 3R_20289857_SNP [dm6]	C	G	2.235e^-4	0.943	SYNONYMOUS_CODING cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22489469	3R_22489469_SNP [dm3] 3R_26663747_SNP [dm6]	A	G	2.236e^-4	0.943	INTRON beat-VII
3L	3463180	3L_3463180_SNP [dm3] 3L_3463180_SNP [dm6]	C	G	2.244e^-4	0.943	NON_SYNONYMOUS_CODING armi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1520630	3L_1520630_SNP [dm3] 3L_1520630_SNP [dm6]	C	T	2.252e^-4	0.943	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
2R	4967747	2R_4967747_SNP [dm3] 2R_9080242_SNP [dm6]	C	T	2.288e^-4	0.943	SYNONYMOUS_CODING CG8083
3L	3331718	3L_3331718_SNP [dm3] 3L_3331718_SNP [dm6]	C	T	2.294e^-4	0.943	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25520148	3R_25520148_SNP [dm3] 3R_29694426_SNP [dm6]	C	T	2.306e^-4	0.943	INTRON dmrt99B
2R	2793600	2R_2793600_SNP [dm3] 2R_6906095_SNP [dm6]	G	T	2.306e^-4	0.943	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
2L	15874090	2L_15874090_SNP [dm3] 2L_15874090_SNP [dm6]	A	T	2.320e^-4	0.943	INTERGENIC
X	18370094	X_18370094_SNP [dm3] X_18476061_SNP [dm6]	T	A	2.320e^-4	0.943	INTRON CG32547	TF binding site mE1_TFBS_HSA
3R	22551011	3R_22551011_SNP [dm3] 3R_26725289_SNP [dm6]	A	T	2.331e^-4	0.943	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	2770087	3L_2770087_SNP [dm3] 3L_2770087_SNP [dm6]	G	T	2.342e^-4	0.943	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15859535	3R_15859535_SNP [dm3] 3R_20033813_SNP [dm6]	A	T	2.348e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
2L	16197166	2L_16197166_SNP [dm3] 2L_16197166_SNP [dm6]	C	T	2.351e^-4	0.943	UPSTREAM CR44735 INTERGENIC
3R	25789056	3R_25789056_SNP [dm3] 3R_29963334_SNP [dm6]	A	C	2.353e^-4	0.943	INTRON TkR99D
2L	19877018	2L_19877018_SNP [dm3] 2L_19877018_SNP [dm6]	T	C	2.358e^-4	0.943	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17171677	2L_17171677_SNP [dm3] 2L_17171677_SNP [dm6]	C	G	2.358e^-4	0.943	SYNONYMOUS_CODING CG34106 UTR_3_PRIME beat-IIIa
2R	9637298	2R_9637298_SNP [dm3] 2R_13749793_SNP [dm6]	A	C	2.365e^-4	0.943	DOWNSTREAM fas INTERGENIC
2L	4326823	2L_4326823_SNP [dm3] 2L_4326823_SNP [dm6]	T	G	2.372e^-4	0.943	INTRON CG16857
3R	6247655	3R_6247655_SNP [dm3] 3R_10421933_SNP [dm6]	T	G	2.375e^-4	0.943	INTERGENIC
2L	2612712	2L_2612712_SNP [dm3] 2L_2612712_SNP [dm6]	T	C	2.378e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2226259	3L_2226259_SNP [dm3] 3L_2226259_SNP [dm6]	T	A	2.382e^-4	0.943	INTERGENIC
3R	6504655	3R_6504655_SNP [dm3] 3R_10678933_SNP [dm6]	C	G	2.388e^-4	0.943	SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo
3L	1192566	3L_1192566_SNP [dm3] 3L_1192566_SNP [dm6]	T	A	2.392e^-4	0.943	INTRON Trh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20402045	X_20402045_SNP [dm3] X_20531018_SNP [dm6]	T	A	2.393e^-4	0.943	INTERGENIC
3L	13433158	3L_13433158_SNP [dm3] 3L_13440058_SNP [dm6]	T	A	2.393e^-4	0.943	NON_SYNONYMOUS_CODING CG10140 UPSTREAM CG14109
3L	1400917	3L_1400917_SNP [dm3] 3L_1400917_SNP [dm6]	C	T	2.399e^-4	0.943	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F
3R	17646732	3R_17646732_SNP [dm3] 3R_21821010_SNP [dm6]	G	A	2.411e^-4	0.943	UTR_5_PRIME CASK
2R	19660811	2R_19660811_SNP [dm3] 2R_23773288_SNP [dm6]	G	C	2.419e^-4	0.943	INTRON CG9850
3L	8045336	3L_8045336_INS [dm3] 3L_8052236_INS [dm6]	A	TTC	2.462e^-4	0.943	UTR_3_PRIME nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16018436	3R_16018436_SNP [dm3] 3R_20192714_SNP [dm6]	T	C	2.470e^-4	0.943	INTERGENIC
3R	11586450	3R_11586450_SNP [dm3] 3R_15760728_SNP [dm6]	C	T	2.471e^-4	0.943	INTERGENIC
3L	9946009	3L_9946009_SNP [dm3] 3L_9952909_SNP [dm6]	A	T	2.473e^-4	0.943	INTRON CG34356
3R	12058259	3R_12058259_SNP [dm3] 3R_16232537_SNP [dm6]	G	C	2.475e^-4	0.943	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19223164	3L_19223164_SNP [dm3] 3L_19230064_SNP [dm6]	C	G	2.483e^-4	0.943	INTRON fz2 EXON CR43893
2L	14782360	2L_14782360_SNP [dm3] 2L_14782360_SNP [dm6]	C	T	2.484e^-4	0.943	DOWNSTREAM CG18636 EXON CR15280
X	17430838	X_17430838_SNP [dm3] X_17536805_SNP [dm6]	G	C	2.485e^-4	0.943	INTRON CG43658
3R	20513309	3R_20513309_SNP [dm3] 3R_24687587_SNP [dm6]	G	T	2.505e^-4	0.943	INTRON slo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11650214	3L_11650214_SNP [dm3] 3L_11657114_SNP [dm6]	G	A	2.514e^-4	0.943	DOWNSTREAM mir-274 INTRON CG32085
3R	15561095	3R_15561095_SNP [dm3] 3R_19735373_SNP [dm6]	C	A	2.519e^-4	0.943	INTRON GluClalpha
2L	13871367	2L_13871367_SNP [dm3] 2L_13871367_SNP [dm6]	C	T	2.521e^-4	0.943	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
3R	25520166	3R_25520166_INS [dm3] 3R_29694444_INS [dm6]	G	GGTG	2.535e^-4	0.943	INTRON dmrt99B
2L	5074691	2L_5074691_SNP [dm3] 2L_5074691_SNP [dm6]	T	A	2.536e^-4	0.943	INTRON pgant5
X	3988647	X_3988647_SNP [dm3] X_4094614_SNP [dm6]	C	A	2.536e^-4	0.943	INTERGENIC
3R	19182221	3R_19182221_SNP [dm3] 3R_23356499_SNP [dm6]	T	C	2.543e^-4	0.943	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15696300	3L_15696300_SNP [dm3] 3L_15703200_SNP [dm6]	G	A	2.550e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3453863	3L_3453863_SNP [dm3] 3L_3453863_SNP [dm6]	G	C	2.553e^-4	0.943	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19387228	X_19387228_SNP [dm3] X_19493195_SNP [dm6]	C	T	2.558e^-4	0.943	SYNONYMOUS_CODING CG12203 DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19387594	X_19387594_SNP [dm3] X_19493561_SNP [dm6]	G	C	2.558e^-4	0.943	SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19387652	X_19387652_SNP [dm3] X_19493619_SNP [dm6]	A	G	2.558e^-4	0.943	NON_SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19391643	X_19391643_SNP [dm3] X_19497610_SNP [dm6]	T	C	2.558e^-4	0.943	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3436696	3L_3436696_SNP [dm3] 3L_3436696_SNP [dm6]	A	C	2.582e^-4	0.943	INTRON eIF5B
3L	3436697	3L_3436697_SNP [dm3] 3L_3436697_SNP [dm6]	A	T	2.582e^-4	0.943	INTRON eIF5B
3L	7085495	3L_7085495_SNP [dm3] 3L_7092395_SNP [dm6]	C	A	2.597e^-4	0.943	UPSTREAM Cpr65Ec INTERGENIC
2R	6972097	2R_6972097_SNP [dm3] 2R_11084592_SNP [dm6]	G	T	2.601e^-4	0.943	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	11412344	3L_11412344_SNP [dm3] 3L_11419244_SNP [dm6]	A	G	2.615e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12557636	3R_12557636_SNP [dm3] 3R_16731914_SNP [dm6]	A	G	2.629e^-4	0.943	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7090253	3L_7090253_SNP [dm3] 3L_7097153_SNP [dm6]	G	A	2.642e^-4	0.943	INTRON form3
3L	10263363	3L_10263363_SNP [dm3] 3L_10270263_SNP [dm6]	G	C	2.644e^-4	0.943	EXON CR45242	regulatory region REDfly_CRMs
2L	20862163	2L_20862163_DEL [dm3] 2L_20862163_DEL [dm6]	TT	G	2.645e^-4	0.943	DOWNSTREAM CR9337 INTERGENIC
2L	5296809	2L_5296809_SNP [dm3] 2L_5296809_SNP [dm6]	C	G	2.655e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12690743	3L_12690743_SNP [dm3] 3L_12697643_SNP [dm6]	G	T	2.667e^-4	0.943	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10679565	2R_10679565_SNP [dm3] 2R_14792060_SNP [dm6]	C	T	2.668e^-4	0.943	INTRON kn	TF binding site BDTNP1_TFBS_twi
2R	10596614	2R_10596614_SNP [dm3] 2R_14709109_SNP [dm6]	G	A	2.673e^-4	0.943	INTRON mspo
3R	20638221	3R_20638221_SNP [dm3] 3R_24812499_SNP [dm6]	T	G	2.687e^-4	0.943	INTRON CG5807	TF binding site mE1_TFBS_zfh1
3L	9944164	3L_9944164_SNP [dm3] 3L_9951064_SNP [dm6]	C	T	2.687e^-4	0.943	INTRON CG34356
2L	3781723	2L_3781723_SNP [dm3] 2L_3781723_SNP [dm6]	A	G	2.691e^-4	0.943	INTRON bowl	TF binding site mE1_TFBS_cad
2R	7139464	2R_7139464_SNP [dm3] 2R_11251959_SNP [dm6]	A	C	2.692e^-4	0.943	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23113433	3R_23113433_SNP [dm3] 3R_27287711_SNP [dm6]	G	T	2.696e^-4	0.943	SYNONYMOUS_CODING bigmax DOWNSTREAM CG3368	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15175128	2R_15175128_SNP [dm3] 2R_19287623_SNP [dm6]	A	G	2.698e^-4	0.943	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13762488	3L_13762488_SNP [dm3] 3L_13769388_SNP [dm6]	C	G	2.699e^-4	0.943	INTRON bru-3
3R	15857041	3R_15857041_SNP [dm3] 3R_20031319_SNP [dm6]	G	A	2.700e^-4	0.943	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4748359	3L_4748359_SNP [dm3] 3L_4748359_SNP [dm6]	A	G	2.721e^-4	0.943	INTRON RhoGEF64C
3L	9808608	3L_9808608_SNP [dm3] 3L_9815508_SNP [dm6]	A	C	2.723e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
2L	7636887	2L_7636887_SNP [dm3] 2L_7636887_SNP [dm6]	A	C	2.732e^-4	0.943	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3554626	2R_3554626_SNP [dm3] 2R_7667121_SNP [dm6]	T	C	2.734e^-4	0.943	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
2R	9637295	2R_9637295_SNP [dm3] 2R_13749790_SNP [dm6]	G	A	2.739e^-4	0.943	DOWNSTREAM fas INTERGENIC
X	19685600	X_19685600_SNP [dm3] X_19791567_SNP [dm6]	T	A	2.743e^-4	0.943	INTERGENIC
2L	18884583	2L_18884583_SNP [dm3] 2L_18884583_SNP [dm6]	T	A	2.745e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16501081	2R_16501081_SNP [dm3] 2R_20613576_SNP [dm6]	C	G	2.749e^-4	0.943	INTRON Hil
3R	9004783	3R_9004783_SNP [dm3] 3R_13179061_SNP [dm6]	C	T	2.755e^-4	0.943	INTERGENIC
2L	4892215	2L_4892215_SNP [dm3] 2L_4892215_SNP [dm6]	C	T	2.758e^-4	0.943	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	8473633	2L_8473633_SNP [dm3] 2L_8473633_SNP [dm6]	C	T	2.764e^-4	0.943	INTRON d
2R	18042418	2R_18042418_SNP [dm3] 2R_22154913_SNP [dm6]	T	A	2.764e^-4	0.943	INTRON a	TF binding site BDTNP1_TFBS_da
2L	5296847	2L_5296847_SNP [dm3] 2L_5296847_SNP [dm6]	A	T	2.766e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9808651	3L_9808651_SNP [dm3] 3L_9815551_SNP [dm6]	T	G	2.768e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
3R	11246750	3R_11246750_SNP [dm3] 3R_15421028_SNP [dm6]	T	A	2.782e^-4	0.943	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	21247670	3L_21247670_SNP [dm3] 3L_21254570_SNP [dm6]	G	T	2.789e^-4	0.943	INTRON Eip78C
3R	25518373	3R_25518373_SNP [dm3] 3R_29692651_SNP [dm6]	T	C	2.791e^-4	0.943	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20607300	2L_20607300_SNP [dm3] 2L_20607300_SNP [dm6]	C	T	2.795e^-4	0.943	INTRON CR44909 EXON CR43608
3R	23112620	3R_23112620_SNP [dm3] 3R_27286898_SNP [dm6]	G	A	2.795e^-4	0.943	SYNONYMOUS_CODING CG3368 DOWNSTREAM bigmax	TF binding site mE1_TFBS_chinmo
3R	22551008	3R_22551008_SNP [dm3] 3R_26725286_SNP [dm6]	T	A	2.813e^-4	0.943	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	15844789	3R_15844789_SNP [dm3] 3R_20019067_SNP [dm6]	G	A	2.820e^-4	0.943	SYNONYMOUS_CODING CG4433 DOWNSTREAM CG4836
3R	16018261	3R_16018261_SNP [dm3] 3R_20192539_SNP [dm6]	T	A	2.820e^-4	0.943	INTERGENIC
X	7645459	X_7645459_SNP [dm3] X_7751426_SNP [dm6]	G	C	2.823e^-4	0.943	INTERGENIC
3R	16082475	3R_16082475_SNP [dm3] 3R_20256753_SNP [dm6]	G	A	2.828e^-4	0.943	INTRON cic
3L	18211603	3L_18211603_SNP [dm3] 3L_18218503_SNP [dm6]	C	T	2.829e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8913838	3L_8913838_SNP [dm3] 3L_8920738_SNP [dm6]	G	A	2.834e^-4	0.943	INTRON Tsp66E
X	19685453	X_19685453_DEL [dm3] X_19791420_DEL [dm6]	CGAAGGGAAAAAACATTTTT...	C	2.834e^-4	0.943	INTERGENIC
2L	6215454	2L_6215454_INS [dm3] 2L_6215454_INS [dm6]	A	AA	2.840e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14149273	X_14149273_SNP [dm3] X_14255240_SNP [dm6]	T	G	2.841e^-4	0.943	UTR_3_PRIME mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6757103	3L_6757103_SNP [dm3] 3L_6764003_SNP [dm6]	T	C	2.847e^-4	0.943	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10394114	2L_10394114_SNP [dm3] 2L_10394114_SNP [dm6]	A	T	2.851e^-4	0.943	NON_SYNONYMOUS_CODING Mdh1 DOWNSTREAM da	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2266468	3L_2266468_SNP [dm3] 3L_2266468_SNP [dm6]	C	A	2.857e^-4	0.943	UTR_5_PRIME CG13806 UPSTREAM ecd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	822098	3L_822098_SNP [dm3] 3L_822098_SNP [dm6]	T	A	2.858e^-4	0.943	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16638878	3L_16638878_SNP [dm3] 3L_16645778_SNP [dm6]	T	A	2.862e^-4	0.943	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22356318	3R_22356318_SNP [dm3] 3R_26530596_SNP [dm6]	G	A	2.863e^-4	0.943	INTRON plum
3L	511863	3L_511863_SNP [dm3] 3L_511863_SNP [dm6]	A	C	2.864e^-4	0.943	INTRON klar
2L	21292154	2L_21292154_SNP [dm3] 2L_21292154_SNP [dm6]	T	C	2.868e^-4	0.943	NON_SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other	TF binding site mE1_TFBS_HSA
X	10401494	X_10401494_SNP [dm3] X_10507461_SNP [dm6]	T	C	2.871e^-4	0.943	INTRON spri
2R	10679566	2R_10679566_DEL [dm3] 2R_14792061_DEL [dm6]	ATCC	A	2.887e^-4	0.943	INTRON kn	TF binding site BDTNP1_TFBS_twi
2L	20606892	2L_20606892_SNP [dm3] 2L_20606892_SNP [dm6]	A	T	2.898e^-4	0.943	DOWNSTREAM CR43608 INTRON CR44909
2L	2612541	2L_2612541_SNP [dm3] 2L_2612541_SNP [dm6]	T	A	2.902e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7416735	2R_7416735_DEL [dm3] 2R_11529230_DEL [dm6]	CCCAC	T	2.903e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10393417	3L_10393417_SNP [dm3] 3L_10400317_SNP [dm6]	G	A	2.909e^-4	0.943	INTERGENIC
2L	9914085	2L_9914085_SNP [dm3] 2L_9914085_SNP [dm6]	A	C	2.912e^-4	0.943	SYNONYMOUS_CODING Srp54	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	10830776	X_10830776_SNP [dm3] X_10936743_SNP [dm6]	A	T	2.914e^-4	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10833220	X_10833220_SNP [dm3] X_10939187_SNP [dm6]	G	T	2.914e^-4	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833615	X_10833615_SNP [dm3] X_10939582_SNP [dm6]	A	G	2.914e^-4	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7107073	2L_7107073_SNP [dm3] 2L_7107073_SNP [dm6]	T	A	2.921e^-4	0.943	INTRON Pvf3
3R	15856736	3R_15856736_SNP [dm3] 3R_20031014_SNP [dm6]	T	G	2.944e^-4	0.943	SPLICE_SITE_REGION trem UPSTREAM CG4936 INTRON trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25350761	3R_25350761_SNP [dm3] 3R_29525039_SNP [dm6]	T	A	2.960e^-4	0.943	INTERGENIC
3R	6512382	3R_6512382_SNP [dm3] 3R_10686660_SNP [dm6]	T	C	2.964e^-4	0.943	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5296912	2L_5296912_DEL [dm3] 2L_5296912_DEL [dm6]	ATAGCA	A	2.973e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8305809	2R_8305809_DEL [dm3] 2R_12418304_DEL [dm6]	TTTTTCATAT	T	2.975e^-4	0.943	DOWNSTREAM CG42782 & 1 other INTERGENIC
3L	9352198	3L_9352198_DEL [dm3] 3L_9359098_DEL [dm6]	AT	C	2.978e^-4	0.943	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	6137244	3L_6137244_SNP [dm3] 3L_6144144_SNP [dm6]	T	A	2.982e^-4	0.943	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3R	14895173	3R_14895173_SNP [dm3] 3R_19069451_SNP [dm6]	T	A	2.983e^-4	0.943	INTRON cdi
3R	10187613	3R_10187613_SNP [dm3] 3R_14361891_SNP [dm6]	G	C	2.986e^-4	0.943	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10172162	2R_10172162_SNP [dm3] 2R_14284657_SNP [dm6]	A	G	2.994e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad
3L	15018314	3L_15018314_SNP [dm3] 3L_15025214_SNP [dm6]	A	T	3.001e^-4	0.943	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	4947867	X_4947867_SNP [dm3] X_5053834_SNP [dm6]	C	G	3.005e^-4	0.943	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9624008	3R_9624008_SNP [dm3] 3R_13798286_SNP [dm6]	G	A	3.006e^-4	0.943	UPSTREAM tRNA:CR31331 DOWNSTREAM tRNA:CR31588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19022791	3R_19022791_SNP [dm3] 3R_23197069_SNP [dm6]	T	G	3.010e^-4	0.943	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15440760	2L_15440760_SNP [dm3] 2L_15440760_SNP [dm6]	A	C	3.017e^-4	0.943	UPSTREAM CR44862 INTERGENIC
3L	4303110	3L_4303110_SNP [dm3] 3L_4303110_SNP [dm6]	C	T	3.018e^-4	0.943	INTRON dyl
3R	9992055	3R_9992055_SNP [dm3] 3R_14166333_SNP [dm6]	T	G	3.019e^-4	0.943	UTR_3_PRIME Dop1R1
3L	5684043	3L_5684043_SNP [dm3] 3L_5690943_SNP [dm6]	A	G	3.019e^-4	0.943	UPSTREAM sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18088958	3L_18088958_SNP [dm3] 3L_18095858_SNP [dm6]	G	A	3.021e^-4	0.943	INTRON CG13698
2L	8182469	2L_8182469_SNP [dm3] 2L_8182469_SNP [dm6]	C	A	3.028e^-4	0.943	DOWNSTREAM Piezo INTRON Piezo
3L	9808607	3L_9808607_SNP [dm3] 3L_9815507_SNP [dm6]	T	C	3.033e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
2L	15873805	2L_15873805_SNP [dm3] 2L_15873805_SNP [dm6]	T	C	3.034e^-4	0.943	INTERGENIC
2R	9931853	2R_9931853_SNP [dm3] 2R_14044348_SNP [dm6]	A	G	3.042e^-4	0.943	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20572519	2R_20572519_SNP [dm3] 2R_24684996_SNP [dm6]	C	G	3.045e^-4	0.943	START_GAINED Mmp1 UTR_5_PRIME Mmp1 INTRON Mmp1
2R	10171994	2R_10171994_SNP [dm3] 2R_14284489_SNP [dm6]	C	T	3.067e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15855368	3R_15855368_SNP [dm3] 3R_20029646_SNP [dm6]	T	A	3.069e^-4	0.943	UTR_3_PRIME trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15855370	3R_15855370_SNP [dm3] 3R_20029648_SNP [dm6]	A	G	3.069e^-4	0.943	UTR_3_PRIME trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15578111	X_15578111_SNP [dm3] X_15684078_SNP [dm6]	C	T	3.076e^-4	0.943	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7156594	3R_7156594_SNP [dm3] 3R_11330872_SNP [dm6]	A	C	3.079e^-4	0.943	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3794159	3L_3794159_SNP [dm3] 3L_3794159_SNP [dm6]	A	C	3.079e^-4	0.943	INTRON CG32264
2L	17934801	2L_17934801_SNP [dm3] 2L_17934801_SNP [dm6]	T	A	3.080e^-4	0.943	INTERGENIC
2L	18602214	2L_18602214_SNP [dm3] 2L_18602214_SNP [dm6]	G	C	3.080e^-4	0.943	SYNONYMOUS_CODING CG10413	TF binding site mE1_TFBS_sens
3R	12977056	3R_12977056_SNP [dm3] 3R_17151334_SNP [dm6]	C	A	3.094e^-4	0.943	SYNONYMOUS_CODING CG5285 UPSTREAM CG5292 DOWNSTREAM Det	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk
3L	17921656	3L_17921656_SNP [dm3] 3L_17928556_SNP [dm6]	C	T	3.095e^-4	0.943	INTERGENIC
2L	3781860	2L_3781860_SNP [dm3] 2L_3781860_SNP [dm6]	T	A	3.109e^-4	0.943	INTRON bowl	TF binding site mE1_TFBS_cad
X	7645471	X_7645471_SNP [dm3] X_7751438_SNP [dm6]	C	A	3.110e^-4	0.943	INTERGENIC
3L	16052429	3L_16052429_SNP [dm3] 3L_16059329_SNP [dm6]	C	T	3.117e^-4	0.943	INTRON Mbs
2R	10198022	2R_10198022_SNP [dm3] 2R_14310517_SNP [dm6]	C	T	3.121e^-4	0.943	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	10833367	X_10833367_SNP [dm3] X_10939334_SNP [dm6]	A	C	3.122e^-4	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11337691	3R_11337691_DEL [dm3] 3R_15511969_DEL [dm6]	ATACTGCTGGA...	A	3.128e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	25520082	3R_25520082_SNP [dm3] 3R_29694360_SNP [dm6]	G	C	3.142e^-4	0.943	INTRON dmrt99B
3L	9552973	3L_9552973_SNP [dm3] 3L_9559873_SNP [dm6]	T	C	3.151e^-4	0.943	INTRON CG42673
2L	9722090	2L_9722090_SNP [dm3] 2L_9722090_SNP [dm6]	A	T	3.163e^-4	0.943	INTRON Nckx30C
3R	25316875	3R_25316875_SNP [dm3] 3R_29491153_SNP [dm6]	A	G	3.166e^-4	0.943	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14269522	2R_14269522_SNP [dm3] 2R_18382017_SNP [dm6]	A	G	3.171e^-4	0.943	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	9596147	3L_9596147_SNP [dm3] 3L_9603047_SNP [dm6]	C	G	3.173e^-4	0.943	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3R	15844949	3R_15844949_SNP [dm3] 3R_20019227_SNP [dm6]	A	G	3.185e^-4	0.943	SPLICE_SITE_DONOR CG4433 SPLICE_SITE_REGION CG4433 SYNONYMOUS_CODING CG4433 DOWNSTREAM CG4836 INTRON CG4433
2L	6715109	2L_6715109_SNP [dm3] 2L_6715109_SNP [dm6]	G	A	3.186e^-4	0.943	START_GAINED AkhR UTR_5_PRIME AkhR INTRON AkhR
2R	2798226	2R_2798226_SNP [dm3] 2R_6910721_SNP [dm6]	A	G	3.186e^-4	0.943	INTRON CG30158
3R	9585889	3R_9585889_SNP [dm3] 3R_13760167_SNP [dm6]	C	T	3.192e^-4	0.943	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383
X	11780977	X_11780977_SNP [dm3] X_11886944_SNP [dm6]	C	T	3.205e^-4	0.943	UPSTREAM SelG INTRON CG10353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20388954	2L_20388954_SNP [dm3] 2L_20388954_SNP [dm6]	T	C	3.207e^-4	0.943	INTRON CG10947
2L	18266817	2L_18266817_DEL [dm3] 2L_18266817_DEL [dm6]	TT	T	3.217e^-4	0.943	INTRON CG42750
2L	16188898	2L_16188898_SNP [dm3] 2L_16188898_SNP [dm6]	G	A	3.225e^-4	0.943	INTRON Ca-alpha1D
2R	19663810	2R_19663810_SNP [dm3] 2R_23776287_SNP [dm6]	T	C	3.233e^-4	0.943	INTRON CG9850
3R	6552983	3R_6552983_SNP [dm3] 3R_10727261_SNP [dm6]	G	A	3.233e^-4	0.943	INTERGENIC
2L	4029427	2L_4029427_SNP [dm3] 2L_4029427_SNP [dm6]	C	T	3.243e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16243499	2L_16243499_SNP [dm3] 2L_16243499_SNP [dm6]	A	G	3.244e^-4	0.943	SYNONYMOUS_CODING CG42818
X	11660808	X_11660808_SNP [dm3] X_11766775_SNP [dm6]	C	T	3.249e^-4	0.943	SYNONYMOUS_CODING m
2L	6037642	2L_6037642_SNP [dm3] 2L_6037642_SNP [dm6]	A	C	3.251e^-4	0.943	NON_SYNONYMOUS_CODING CG9117 UPSTREAM mtm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6179190	2R_6179190_SNP [dm3] 2R_10291685_SNP [dm6]	A	T	3.252e^-4	0.943	INTRON CAP
3L	9231731	3L_9231731_SNP [dm3] 3L_9238631_SNP [dm6]	A	G	3.267e^-4	0.943	INTERGENIC
3R	19182824	3R_19182824_SNP [dm3] 3R_23357102_SNP [dm6]	T	A	3.277e^-4	0.943	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14511552	3L_14511552_SNP [dm3] 3L_14518452_SNP [dm6]	C	T	3.284e^-4	0.943	UTR_3_PRIME CG9592 INTRON bbg
2L	5296908	2L_5296908_SNP [dm3] 2L_5296908_SNP [dm6]	A	T	3.285e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14254673	3L_14254673_SNP [dm3] 3L_14261573_SNP [dm6]	A	G	3.289e^-4	0.943	INTERGENIC
2R	10000525	2R_10000525_SNP [dm3] 2R_14113020_SNP [dm6]	C	T	3.295e^-4	0.943	INTRON Prosap
2L	19917716	2L_19917716_SNP [dm3] 2L_19917716_SNP [dm6]	C	T	3.297e^-4	0.943	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
2L	18292236	2L_18292236_SNP [dm3] 2L_18292236_SNP [dm6]	C	T	3.304e^-4	0.943	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
3R	15858905	3R_15858905_SNP [dm3] 3R_20033183_SNP [dm6]	T	C	3.304e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3R	15858910	3R_15858910_SNP [dm3] 3R_20033188_SNP [dm6]	C	A	3.304e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3R	15858968	3R_15858968_SNP [dm3] 3R_20033246_SNP [dm6]	A	T	3.304e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3R	15859011	3R_15859011_SNP [dm3] 3R_20033289_SNP [dm6]	A	G	3.304e^-4	0.943	DOWNSTREAM CG10889 INTRON CG4936
3L	17051016	3L_17051016_SNP [dm3] 3L_17057916_SNP [dm6]	G	T	3.308e^-4	0.943	SYNONYMOUS_CODING CG7724 DOWNSTREAM Rbp6	TF binding site mE1_TFBS_cad
2L	4586969	2L_4586969_SNP [dm3] 2L_4586969_SNP [dm6]	G	A	3.313e^-4	0.943	INTRON dp
2L	13208200	2L_13208200_SNP [dm3] 2L_13208200_SNP [dm6]	G	A	3.319e^-4	0.943	SYNONYMOUS_CODING Pect
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	3.334e^-4	0.943	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
2L	4593316	2L_4593316_SNP [dm3] 2L_4593316_SNP [dm6]	G	A	3.338e^-4	0.943	INTRON dp	TF binding site BDTNP1_TFBS_da
2L	8808406	2L_8808406_SNP [dm3] 2L_8808406_SNP [dm6]	A	G	3.339e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	15852857	3R_15852857_SNP [dm3] 3R_20027135_SNP [dm6]	C	G	3.343e^-4	0.943	SYNONYMOUS_CODING CG4424 UPSTREAM CG4854 DOWNSTREAM psidin
2R	4484306	2R_4484306_INS [dm3] 2R_8596801_INS [dm6]	C	CTAATAATTAATAATTAATT...	3.349e^-4	0.943	DOWNSTREAM CG8735 INTERGENIC
2L	19922236	2L_19922236_SNP [dm3] 2L_19922236_SNP [dm6]	G	A	3.354e^-4	0.943	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	19922239	2L_19922239_SNP [dm3] 2L_19922239_SNP [dm6]	G	A	3.354e^-4	0.943	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	6230203	2L_6230203_SNP [dm3] 2L_6230203_SNP [dm6]	T	C	3.362e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14099872	3L_14099872_SNP [dm3] 3L_14106772_SNP [dm6]	A	G	3.365e^-4	0.943	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5296870	2L_5296870_SNP [dm3] 2L_5296870_SNP [dm6]	A	T	3.373e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7779688	2L_7779688_INS [dm3] 2L_7779688_INS [dm6]	C	GTTT	3.375e^-4	0.943	UPSTREAM Uro INTERGENIC
X	2152633	X_2152633_SNP [dm3] X_2258600_SNP [dm6]	G	T	3.375e^-4	0.943	UTR_5_PRIME CG3078	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24422075	3R_24422075_SNP [dm3] 3R_28596353_SNP [dm6]	G	A	3.383e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11707907	2R_11707907_SNP [dm3] 2R_15820402_SNP [dm6]	C	T	3.386e^-4	0.943	NON_SYNONYMOUS_CODING CG33465 INTRON tun
3R	14904732	3R_14904732_SNP [dm3] 3R_19079010_SNP [dm6]	T	C	3.394e^-4	0.943	INTRON cdi
3L	3794154	3L_3794154_SNP [dm3] 3L_3794154_SNP [dm6]	G	C	3.409e^-4	0.943	INTRON CG32264
2R	17370167	2R_17370167_SNP [dm3] 2R_21482662_SNP [dm6]	G	C	3.429e^-4	0.943	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13550979	3R_13550979_SNP [dm3] 3R_17725257_SNP [dm6]	G	A	3.429e^-4	0.943	UPSTREAM Lgr1 & 1 other INTERGENIC
3L	3436650	3L_3436650_SNP [dm3] 3L_3436650_SNP [dm6]	G	C	3.430e^-4	0.943	INTRON eIF5B
3L	15231866	3L_15231866_SNP [dm3] 3L_15238766_SNP [dm6]	C	G	3.430e^-4	0.943	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5032001	X_5032001_SNP [dm3] X_5137968_SNP [dm6]	C	T	3.438e^-4	0.943	INTRON rg & 1 other
3L	12872713	3L_12872713_SNP [dm3] 3L_12879613_SNP [dm6]	C	G	3.438e^-4	0.943	INTERGENIC
3R	15678812	3R_15678812_SNP [dm3] 3R_19853090_SNP [dm6]	G	A	3.443e^-4	0.943	DOWNSTREAM Ire1 & 1 other INTRON CG4662
2L	20479288	2L_20479288_SNP [dm3] 2L_20479288_SNP [dm6]	C	T	3.446e^-4	0.943	UPSTREAM CR43234 INTRON CR44980
2L	8807419	2L_8807419_SNP [dm3] 2L_8807419_SNP [dm6]	A	C	3.449e^-4	0.943	INTERGENIC
2L	8807421	2L_8807421_SNP [dm3] 2L_8807421_SNP [dm6]	G	A	3.449e^-4	0.943	INTERGENIC
2L	20428480	2L_20428480_SNP [dm3] 2L_20428480_SNP [dm6]	C	T	3.464e^-4	0.943	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	3522944	X_3522944_SNP [dm3] X_3628911_SNP [dm6]	G	T	3.466e^-4	0.943	INTRON AstA-R1
2R	9931856	2R_9931856_SNP [dm3] 2R_14044351_SNP [dm6]	C	G	3.467e^-4	0.943	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18292135	2L_18292135_SNP [dm3] 2L_18292135_SNP [dm6]	G	A	3.473e^-4	0.943	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
2L	18824137	2L_18824137_SNP [dm3] 2L_18824137_SNP [dm6]	A	T	3.475e^-4	0.943	INTRON CG17323
3L	11235579	3L_11235579_SNP [dm3] 3L_11242479_SNP [dm6]	T	A	3.475e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	8853502	3L_8853502_SNP [dm3] 3L_8860402_SNP [dm6]	G	T	3.478e^-4	0.943	INTRON dally
X	3445131	X_3445131_SNP [dm3] X_3551098_SNP [dm6]	A	T	3.479e^-4	0.943	INTRON CG32791
3L	8660703	3L_8660703_SNP [dm3] 3L_8667603_SNP [dm6]	T	A	3.480e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	11790436	2R_11790436_DEL [dm3] 2R_15902931_DEL [dm6]	CCTCGCTTACTGTGAAGTAT...	C	3.487e^-4	0.943	INTRON sli	TF binding site BDTNP1_TFBS_twi
2L	19894437	2L_19894437_SNP [dm3] 2L_19894437_SNP [dm6]	C	T	3.487e^-4	0.943	INTRON sick	silencer mE1_HDAC_PRE
3L	11148990	3L_11148990_SNP [dm3] 3L_11155890_SNP [dm6]	T	A	3.488e^-4	0.943	INTRON CG32082
2L	5296748	2L_5296748_SNP [dm3] 2L_5296748_SNP [dm6]	C	A	3.490e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5296788	2L_5296788_SNP [dm3] 2L_5296788_SNP [dm6]	T	A	3.490e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18912984	3R_18912984_SNP [dm3] 3R_23087262_SNP [dm6]	C	A	3.491e^-4	0.943	INTRON CG13830
3L	1233472	3L_1233472_SNP [dm3] 3L_1233472_SNP [dm6]	A	G	3.501e^-4	0.943	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_sens
2L	6764084	2L_6764084_SNP [dm3] 2L_6764084_SNP [dm6]	G	C	3.504e^-4	0.943	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	21405190	3R_21405190_SNP [dm3] 3R_25579468_SNP [dm6]	A	G	3.508e^-4	0.943	INTRON msi
3L	12835297	3L_12835297_SNP [dm3] 3L_12842197_SNP [dm6]	A	C	3.514e^-4	0.943	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	6356407	2L_6356407_SNP [dm3] 2L_6356407_SNP [dm6]	G	T	3.521e^-4	0.943	NON_SYNONYMOUS_CODING ppk14 DOWNSTREAM CG9500	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	1575176	2L_1575176_SNP [dm3] 2L_1575176_SNP [dm6]	G	A	3.528e^-4	0.943	INTRON haf
2R	7423239	2R_7423239_DEL [dm3] 2R_11535734_DEL [dm6]	AAAAGGTACATTCAA...	A	3.543e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13628060	2R_13628060_SNP [dm3] 2R_17740555_SNP [dm6]	T	C	3.544e^-4	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	12946777	3R_12946777_SNP [dm3] 3R_17121055_SNP [dm6]	A	T	3.547e^-4	0.943	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
3R	15856567	3R_15856567_SNP [dm3] 3R_20030845_SNP [dm6]	C	G	3.551e^-4	0.943	NON_SYNONYMOUS_CODING trem UPSTREAM CG4936	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15857077	3R_15857077_SNP [dm3] 3R_20031355_SNP [dm6]	G	A	3.551e^-4	0.943	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26487561	3R_26487561_SNP [dm3] 3R_30661839_SNP [dm6]	G	T	3.557e^-4	0.943	INTERGENIC
X	20429307	X_20429307_SNP [dm3] X_20558280_SNP [dm6]	A	C	3.558e^-4	0.943	INTRON RunxB
3R	25520191	3R_25520191_SNP [dm3] 3R_29694469_SNP [dm6]	G	A	3.566e^-4	0.943	INTRON dmrt99B
3L	11675211	3L_11675211_SNP [dm3] 3L_11682111_SNP [dm6]	G	T	3.570e^-4	0.943	UTR_5_PRIME TfIIEalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	16074063	3L_16074063_SNP [dm3] 3L_16080963_SNP [dm6]	G	A	3.576e^-4	0.943	UTR_3_PRIME Mbs
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	3.589e^-4	0.943	INTRON CG4927
2R	13964395	2R_13964395_SNP [dm3] 2R_18076890_SNP [dm6]	C	T	3.595e^-4	0.943	INTRON CG34386
3R	16479424	3R_16479424_SNP [dm3] 3R_20653702_SNP [dm6]	C	T	3.596e^-4	0.943	INTRON Nep4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8921958	2R_8921958_INS [dm3] 2R_13034453_INS [dm6]	A	AGA	3.599e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6536406	3R_6536406_SNP [dm3] 3R_10710684_SNP [dm6]	T	A	3.604e^-4	0.943	SYNONYMOUS_CODING CG14689	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20607667	2L_20607667_SNP [dm3] 2L_20607667_SNP [dm6]	G	C	3.605e^-4	0.943	INTRON CR44909 EXON CR43608
2L	7493965	2L_7493965_SNP [dm3] 2L_7493965_SNP [dm6]	A	G	3.612e^-4	0.943	INTRON Ziz
3R	13656830	3R_13656830_SNP [dm3] 3R_17831108_SNP [dm6]	T	G	3.641e^-4	0.943	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17920301	3L_17920301_SNP [dm3] 3L_17927201_SNP [dm6]	G	T	3.648e^-4	0.943	INTERGENIC
3L	8849107	3L_8849107_SNP [dm3] 3L_8856007_SNP [dm6]	G	A	3.654e^-4	0.943	INTRON dally
2L	7781620	2L_7781620_SNP [dm3] 2L_7781620_SNP [dm6]	A	G	3.661e^-4	0.943	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
3R	15857102	3R_15857102_SNP [dm3] 3R_20031380_SNP [dm6]	G	A	3.667e^-4	0.943	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7417918	2R_7417918_SNP [dm3] 2R_11530413_SNP [dm6]	A	C	3.669e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9980804	2R_9980804_SNP [dm3] 2R_14093299_SNP [dm6]	G	T	3.672e^-4	0.943	INTRON Prosap
2R	14888343	2R_14888343_SNP [dm3] 2R_19000838_SNP [dm6]	A	C	3.674e^-4	0.943	INTRON tn
3L	9857460	3L_9857460_SNP [dm3] 3L_9864360_SNP [dm6]	A	T	3.679e^-4	0.943	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6554588	3R_6554588_SNP [dm3] 3R_10728866_SNP [dm6]	G	C	3.689e^-4	0.943	INTERGENIC
2R	2798227	2R_2798227_SNP [dm3] 2R_6910722_SNP [dm6]	G	A	3.689e^-4	0.943	INTRON CG30158
3L	1740093	3L_1740093_SNP [dm3] 3L_1740093_SNP [dm6]	C	T	3.694e^-4	0.943	INTRON Gk
X	15579021	X_15579021_SNP [dm3] X_15684988_SNP [dm6]	A	T	3.700e^-4	0.943	UTR_3_PRIME CG15599	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6545273	3R_6545273_SNP [dm3] 3R_10719551_SNP [dm6]	G	T	3.705e^-4	0.943	INTERGENIC
3R	16236941	3R_16236941_DEL [dm3] 3R_20411219_DEL [dm6]	AAG	A	3.706e^-4	0.943	INTRON Gfrl
2L	14241930	2L_14241930_SNP [dm3] 2L_14241930_SNP [dm6]	A	T	3.710e^-4	0.943	DOWNSTREAM CR44216 INTERGENIC
3R	3882992	3R_3882992_SNP [dm3] 3R_8057270_SNP [dm6]	C	G	3.724e^-4	0.943	INTERGENIC
2L	3827112	2L_3827112_INS [dm3] 2L_3827112_INS [dm6]	A	AGA	3.728e^-4	0.943	DOWNSTREAM slp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5926078	2L_5926078_SNP [dm3] 2L_5926078_SNP [dm6]	A	G	3.728e^-4	0.943	START_GAINED dsf UTR_5_PRIME dsf UPSTREAM CR43926
2L	19861142	2L_19861142_SNP [dm3] 2L_19861142_SNP [dm6]	T	A	3.731e^-4	0.943	INTRON sick
3R	6246470	3R_6246470_SNP [dm3] 3R_10420748_SNP [dm6]	A	G	3.732e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7983733	2R_7983733_SNP [dm3] 2R_12096228_SNP [dm6]	C	A	3.742e^-4	0.943	INTRON jeb
X	12104862	X_12104862_DEL [dm3] X_12210829_DEL [dm6]	TT	T	3.744e^-4	0.943	INTRON Ten-a
3R	15857943	3R_15857943_SNP [dm3] 3R_20032221_SNP [dm6]	G	T	3.746e^-4	0.943	SYNONYMOUS_CODING CG4936 UPSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10632886	3R_10632886_SNP [dm3] 3R_14807164_SNP [dm6]	C	A	3.747e^-4	0.943	UTR_3_PRIME btsz	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	10632887	3R_10632887_SNP [dm3] 3R_14807165_SNP [dm6]	C	T	3.747e^-4	0.943	UTR_3_PRIME btsz	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	3445050	X_3445050_SNP [dm3] X_3551017_SNP [dm6]	C	G	3.753e^-4	0.943	INTRON CG32791
3R	13453293	3R_13453293_SNP [dm3] 3R_17627571_SNP [dm6]	C	T	3.756e^-4	0.943	SPLICE_SITE_REGION CG14325 SYNONYMOUS_CODING CG14325	TF binding site mE1_TFBS_chinmo
3L	2275142	3L_2275142_SNP [dm3] 3L_2275142_SNP [dm6]	T	C	3.757e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15918541	3L_15918541_INS [dm3] 3L_15925441_INS [dm6]	C	CTTAAAATGC	3.767e^-4	0.943	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10062913	2L_10062913_SNP [dm3] 2L_10062913_SNP [dm6]	A	C	3.775e^-4	0.943	SYNONYMOUS_CODING Spn31A
3L	14476258	3L_14476258_SNP [dm3] 3L_14483158_SNP [dm6]	A	G	3.775e^-4	0.943	INTRON bbg
X	7645003	X_7645003_SNP [dm3] X_7750970_SNP [dm6]	T	A	3.780e^-4	0.943	INTERGENIC
3L	1524769	3L_1524769_SNP [dm3] 3L_1524769_SNP [dm6]	T	G	3.783e^-4	0.943	NON_SYNONYMOUS_CODING CG12090
2R	7415189	2R_7415189_SNP [dm3] 2R_11527684_SNP [dm6]	G	A	3.789e^-4	0.943	UTR_5_PRIME en	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5296744	2L_5296744_SNP [dm3] 2L_5296744_SNP [dm6]	A	T	3.793e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6981949	2R_6981949_SNP [dm3] 2R_11094444_SNP [dm6]	A	T	3.796e^-4	0.943	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	5296903	2L_5296903_SNP [dm3] 2L_5296903_SNP [dm6]	T	C	3.796e^-4	0.943	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10171966	2R_10171966_SNP [dm3] 2R_14284461_SNP [dm6]	G	A	3.798e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21961529	3R_21961529_SNP [dm3] 3R_26135807_SNP [dm6]	T	C	3.799e^-4	0.943	SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5729139	3L_5729139_SNP [dm3] 3L_5736039_SNP [dm6]	G	A	3.800e^-4	0.943	SYNONYMOUS_CODING sif
3R	21772311	3R_21772311_SNP [dm3] 3R_25946589_SNP [dm6]	T	G	3.801e^-4	0.943	INTRON CCAP-R
2L	9311121	2L_9311121_SNP [dm3] 2L_9311121_SNP [dm6]	C	A	3.809e^-4	0.943	INTERGENIC
3R	26455068	3R_26455068_SNP [dm3] 3R_30629346_SNP [dm6]	C	T	3.820e^-4	0.943	UPSTREAM CG2267 INTERGENIC
3R	18597465	3R_18597465_SNP [dm3] 3R_22771743_SNP [dm6]	T	C	3.825e^-4	0.943	UPSTREAM CG43094 INTRON Usp12-46 & 2 others
3L	9808717	3L_9808717_SNP [dm3] 3L_9815617_SNP [dm6]	T	C	3.835e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
2L	4586966	2L_4586966_SNP [dm3] 2L_4586966_SNP [dm6]	G	T	3.843e^-4	0.943	INTRON dp
3L	5374724	3L_5374724_SNP [dm3] 3L_5381624_SNP [dm6]	A	G	3.845e^-4	0.943	INTRON Ir64a
3L	10587480	3L_10587480_SNP [dm3] 3L_10594380_SNP [dm6]	T	G	3.859e^-4	0.943	DOWNSTREAM A2bp1 INTERGENIC
2R	14892248	2R_14892248_SNP [dm3] 2R_19004743_SNP [dm6]	C	T	3.860e^-4	0.943	SYNONYMOUS_CODING tn INTRON tn
2R	4460266	2R_4460266_SNP [dm3] 2R_8572761_SNP [dm6]	C	T	3.893e^-4	0.943	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
2R	13136389	2R_13136389_SNP [dm3] 2R_17248884_SNP [dm6]	T	C	3.899e^-4	0.943	INTRON mbl
2R	4273358	2R_4273358_SNP [dm3] 2R_8385853_SNP [dm6]	A	T	3.905e^-4	0.943	INTRON pdm3
2L	20972825	2L_20972825_SNP [dm3] 2L_20972825_SNP [dm6]	C	T	3.906e^-4	0.943	INTRON CG42238
2L	6038068	2L_6038068_SNP [dm3] 2L_6038068_SNP [dm6]	G	A	3.910e^-4	0.943	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1036022	3L_1036022_SNP [dm3] 3L_1036022_SNP [dm6]	A	T	3.916e^-4	0.943	DOWNSTREAM bab1 INTRON CG9205	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	10026128	X_10026128_SNP [dm3] X_10132095_SNP [dm6]	T	C	3.926e^-4	0.943	INTRON CR44894 & 1 other
2L	9606499	2L_9606499_SNP [dm3] 2L_9606499_SNP [dm6]	C	A	3.940e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs
3L	7071978	3L_7071978_DEL [dm3] 3L_7078878_DEL [dm6]	GG	G	3.948e^-4	0.943	INTERGENIC
X	15578115	X_15578115_SNP [dm3] X_15684082_SNP [dm6]	G	A	3.960e^-4	0.943	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13439245	3L_13439245_SNP [dm3] 3L_13446145_SNP [dm6]	T	C	3.965e^-4	0.943	SYNONYMOUS_CODING CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6504607	3R_6504607_SNP [dm3] 3R_10678885_SNP [dm6]	G	A	3.972e^-4	0.943	SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo
2R	14891772	2R_14891772_SNP [dm3] 2R_19004267_SNP [dm6]	T	C	3.989e^-4	0.943	INTRON tn
3L	18067744	3L_18067744_SNP [dm3] 3L_18074644_SNP [dm6]	A	G	3.997e^-4	0.943	UPSTREAM CG44004 EXON CR45391
3R	13656813	3R_13656813_SNP [dm3] 3R_17831091_SNP [dm6]	A	G	4.004e^-4	0.943	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5335630	X_5335630_SNP [dm3] X_5441597_SNP [dm6]	A	G	4.006e^-4	0.943	INTERGENIC
3R	16236940	3R_16236940_SNP [dm3] 3R_20411218_SNP [dm6]	A	T	4.010e^-4	0.943	INTRON Gfrl
2R	13628057	2R_13628057_SNP [dm3] 2R_17740552_SNP [dm6]	C	G	4.014e^-4	0.943	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	15584344	3L_15584344_SNP [dm3] 3L_15591244_SNP [dm6]	C	T	4.019e^-4	0.943	INTRON RhoGAP71E	TF binding site mE1_TFBS_cnc
2L	8176151	2L_8176151_SNP [dm3] 2L_8176151_SNP [dm6]	A	C	4.020e^-4	0.943	INTRON Piezo
3R	14141732	3R_14141732_SNP [dm3] 3R_18316010_SNP [dm6]	G	C	4.020e^-4	0.943	DOWNSTREAM CG31235 INTERGENIC
X	10833396	X_10833396_SNP [dm3] X_10939363_SNP [dm6]	T	A	4.024e^-4	0.943	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3462004	3L_3462004_SNP [dm3] 3L_3462004_SNP [dm6]	A	T	4.026e^-4	0.943	UPSTREAM armi INTRON armi
3L	3462071	3L_3462071_SNP [dm3] 3L_3462071_SNP [dm6]	A	T	4.026e^-4	0.943	UPSTREAM armi INTRON armi
X	1837530	X_1837530_SNP [dm3] X_1943497_SNP [dm6]	A	G	4.031e^-4	0.943	INTRON Hr4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14758574	3L_14758574_SNP [dm3] 3L_14765474_SNP [dm6]	G	A	4.036e^-4	0.943	NON_SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
2L	9258471	2L_9258471_SNP [dm3] 2L_9258471_SNP [dm6]	T	G	4.038e^-4	0.943	INTRON Ggamma30A
X	9501872	X_9501872_SNP [dm3] X_9607839_SNP [dm6]	A	G	4.051e^-4	0.943	SYNONYMOUS_CODING Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	10175304	2R_10175304_SNP [dm3] 2R_14287799_SNP [dm6]	C	T	4.052e^-4	0.943	UPSTREAM Ih INTRON Ih
3L	16148712	3L_16148712_SNP [dm3] 3L_16155612_SNP [dm6]	T	C	4.052e^-4	0.943	INTRON CG5151
3L	16148718	3L_16148718_SNP [dm3] 3L_16155618_SNP [dm6]	A	G	4.052e^-4	0.943	INTRON CG5151
3R	6512387	3R_6512387_SNP [dm3] 3R_10686665_SNP [dm6]	G	A	4.057e^-4	0.943	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22511529	3R_22511529_SNP [dm3] 3R_26685807_SNP [dm6]	G	T	4.059e^-4	0.943	INTERGENIC
3R	22071543	3R_22071543_SNP [dm3] 3R_26245821_SNP [dm6]	A	G	4.059e^-4	0.943	INTRON CR42745
3R	17841821	3R_17841821_SNP [dm3] 3R_22016099_SNP [dm6]	A	G	4.066e^-4	0.943	UTR_3_PRIME CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
X	11039479	X_11039479_SNP [dm3] X_11145446_SNP [dm6]	G	A	4.067e^-4	0.943	UTR_3_PRIME Ran DOWNSTREAM CG15201	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21856428	2L_21856428_INS [dm3] 2L_21856428_INS [dm6]	C	CTC	4.070e^-4	0.943	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4460239	2R_4460239_SNP [dm3] 2R_8572734_SNP [dm6]	A	G	4.073e^-4	0.943	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
3R	10962554	3R_10962554_SNP [dm3] 3R_15136832_SNP [dm6]	A	G	4.075e^-4	0.943	UPSTREAM CG3984 DOWNSTREAM CR45600 INTRON CG6912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	15018305	3L_15018305_SNP [dm3] 3L_15025205_SNP [dm6]	G	A	4.078e^-4	0.943	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	3919325	2L_3919325_SNP [dm3] 2L_3919325_SNP [dm6]	A	T	4.081e^-4	0.943	SYNONYMOUS_CODING fred
2L	6038040	2L_6038040_INS [dm3] 2L_6038040_INS [dm6]	T	AG	4.084e^-4	0.943	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9447161	2R_9447161_SNP [dm3] 2R_13559656_SNP [dm6]	G	A	4.093e^-4	0.943	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9447173	2R_9447173_DEL [dm3] 2R_13559668_DEL [dm6]	AA	A	4.093e^-4	0.943	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13150961	3L_13150961_SNP [dm3] 3L_13157861_SNP [dm6]	A	C	4.097e^-4	0.943	INTERGENIC
3R	21272861	3R_21272861_SNP [dm3] 3R_25447139_SNP [dm6]	A	G	4.107e^-4	0.943	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	15614992	2L_15614992_SNP [dm3] 2L_15614992_SNP [dm6]	T	C	4.109e^-4	0.943	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
3L	20269766	3L_20269766_SNP [dm3] 3L_20276666_SNP [dm6]	G	C	4.118e^-4	0.943	INTRON gogo
2R	12612597	2R_12612597_SNP [dm3] 2R_16725092_SNP [dm6]	G	A	4.129e^-4	0.943	INTRON CG30463
X	20402048	X_20402048_SNP [dm3] X_20531021_SNP [dm6]	T	A	4.133e^-4	0.943	INTERGENIC
X	20402050	X_20402050_SNP [dm3] X_20531023_SNP [dm6]	T	G	4.133e^-4	0.943	INTERGENIC
3L	10116403	3L_10116403_SNP [dm3] 3L_10123303_SNP [dm6]	A	T	4.145e^-4	0.943	INTRON dpr6
3L	12690744	3L_12690744_SNP [dm3] 3L_12697644_SNP [dm6]	A	G	4.163e^-4	0.943	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26457510	3R_26457510_DEL [dm3] 3R_30631788_DEL [dm6]	AGTGCCATAAAAA...	A	4.163e^-4	0.943	INTERGENIC
3R	12680641	3R_12680641_SNP [dm3] 3R_16854919_SNP [dm6]	C	A	4.168e^-4	0.943	INTRON iab-8 & 1 other EXON iab-4 & 1 other
3R	26049285	3R_26049285_SNP [dm3] 3R_30223563_SNP [dm6]	T	G	4.175e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	11586497	3R_11586497_SNP [dm3] 3R_15760775_SNP [dm6]	G	A	4.184e^-4	0.943	INTERGENIC
3R	23112655	3R_23112655_SNP [dm3] 3R_27286933_SNP [dm6]	G	A	4.193e^-4	0.943	NON_SYNONYMOUS_CODING CG3368 DOWNSTREAM bigmax	TF binding site mE1_TFBS_chinmo
2L	2553128	2L_2553128_SNP [dm3] 2L_2553128_SNP [dm6]	C	A	4.196e^-4	0.943	UPSTREAM CG3515 INTERGENIC
2L	8875700	2L_8875700_SNP [dm3] 2L_8875700_SNP [dm6]	A	T	4.197e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20402723	2L_20402723_SNP [dm3] 2L_20402723_SNP [dm6]	C	T	4.201e^-4	0.943	INTRON CG10947
2L	20838646	2L_20838646_SNP [dm3] 2L_20838646_SNP [dm6]	G	A	4.207e^-4	0.943	UPSTREAM Spn38F INTERGENIC
X	6765333	X_6765333_SNP [dm3] X_6871300_SNP [dm6]	T	G	4.211e^-4	0.943	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18800264	3R_18800264_SNP [dm3] 3R_22974542_SNP [dm6]	C	A	4.214e^-4	0.943	INTERGENIC
3L	6278132	3L_6278132_SNP [dm3] 3L_6285032_SNP [dm6]	C	T	4.220e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5374707	3L_5374707_SNP [dm3] 3L_5381607_SNP [dm6]	C	T	4.222e^-4	0.943	INTRON Ir64a
3L	1385628	3L_1385628_SNP [dm3] 3L_1385628_SNP [dm6]	A	T	4.226e^-4	0.943	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	12946765	3R_12946765_SNP [dm3] 3R_17121043_SNP [dm6]	T	G	4.229e^-4	0.943	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
2L	5912000	2L_5912000_SNP [dm3] 2L_5912000_SNP [dm6]	T	C	4.230e^-4	0.943	SYNONYMOUS_CODING bchs
2L	5914940	2L_5914940_SNP [dm3] 2L_5914940_SNP [dm6]	C	G	4.230e^-4	0.943	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2L	5915591	2L_5915591_SNP [dm3] 2L_5915591_SNP [dm6]	A	G	4.230e^-4	0.943	SYNONYMOUS_CODING bchs
3L	10514798	3L_10514798_SNP [dm3] 3L_10521698_SNP [dm6]	G	T	4.231e^-4	0.943	INTRON A2bp1	TF binding site mE1_TFBS_Trl
3L	17922006	3L_17922006_SNP [dm3] 3L_17928906_SNP [dm6]	C	A	4.235e^-4	0.943	INTERGENIC
3L	7055217	3L_7055217_SNP [dm3] 3L_7062117_SNP [dm6]	A	G	4.236e^-4	0.943	INTRON CG8641
3R	25762580	3R_25762580_SNP [dm3] 3R_29936858_SNP [dm6]	T	A	4.243e^-4	0.943	NON_SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5230474	2L_5230474_SNP [dm3] 2L_5230474_SNP [dm6]	A	G	4.247e^-4	0.943	INTRON tkv
2R	12273249	2R_12273249_SNP [dm3] 2R_16385744_SNP [dm6]	A	T	4.248e^-4	0.943	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
2R	12273251	2R_12273251_SNP [dm3] 2R_16385746_SNP [dm6]	G	A	4.248e^-4	0.943	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
2L	4595851	2L_4595851_SNP [dm3] 2L_4595851_SNP [dm6]	A	G	4.251e^-4	0.943	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4595852	2L_4595852_SNP [dm3] 2L_4595852_SNP [dm6]	G	A	4.251e^-4	0.943	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4594327	2L_4594327_INS [dm3] 2L_4594327_INS [dm6]	A	AAA	4.251e^-4	0.943	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16018538	3R_16018538_SNP [dm3] 3R_20192816_SNP [dm6]	T	A	4.252e^-4	0.943	INTERGENIC
2R	3236507	2R_3236507_SNP [dm3] 2R_7349002_SNP [dm6]	G	A	4.261e^-4	0.943	INTRON Dscam1
X	20745221	X_20745221_SNP [dm3] X_20874194_SNP [dm6]	A	G	4.270e^-4	0.943	UPSTREAM CR11235 INTRON shakB
2L	13274284	2L_13274284_SNP [dm3] 2L_13274284_SNP [dm6]	A	C	4.277e^-4	0.943	INTRON CG44085
3R	17426602	3R_17426602_SNP [dm3] 3R_21600880_SNP [dm6]	G	A	4.285e^-4	0.943	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9857197	3L_9857197_SNP [dm3] 3L_9864097_SNP [dm6]	T	A	4.286e^-4	0.943	SPLICE_SITE_REGION iPLA2-VIA UTR_5_PRIME iPLA2-VIA UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10171279	2R_10171279_SNP [dm3] 2R_14283774_SNP [dm6]	C	T	4.286e^-4	0.943	INTRON Ih
2L	5636509	2L_5636509_SNP [dm3] 2L_5636509_SNP [dm6]	G	A	4.289e^-4	0.943	INTRON CG31646
3L	1608539	3L_1608539_SNP [dm3] 3L_1608539_SNP [dm6]	T	C	4.305e^-4	0.943	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18292169	2L_18292169_DEL [dm3] 2L_18292169_DEL [dm6]	CT	C	4.311e^-4	0.943	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
2R	15946468	2R_15946468_SNP [dm3] 2R_20058963_SNP [dm6]	G	T	4.318e^-4	0.943	DOWNSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	4465894	2R_4465894_SNP [dm3] 2R_8578389_SNP [dm6]	C	A	4.320e^-4	0.943	UTR_5_PRIME CG42326 INTRON CG42326
2L	6038061	2L_6038061_SNP [dm3] 2L_6038061_SNP [dm6]	C	A	4.322e^-4	0.943	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19857187	2L_19857187_SNP [dm3] 2L_19857187_SNP [dm6]	A	G	4.326e^-4	0.943	INTRON sick
2R	7417568	2R_7417568_SNP [dm3] 2R_11530063_SNP [dm6]	G	C	4.330e^-4	0.943	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	18084483	3L_18084483_INS [dm3] 3L_18091383_INS [dm6]	A	AA	4.339e^-4	0.943	INTRON CG13698
3R	22551400	3R_22551400_SNP [dm3] 3R_26725678_SNP [dm6]	C	G	4.345e^-4	0.943	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
2R	6719625	2R_6719625_SNP [dm3] 2R_10832120_SNP [dm6]	G	A	4.346e^-4	0.943	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25139548	3R_25139548_SNP [dm3] 3R_29313826_SNP [dm6]	G	A	4.350e^-4	0.943	INTERGENIC
2L	18279265	2L_18279265_SNP [dm3] 2L_18279265_SNP [dm6]	G	T	4.352e^-4	0.943	EXON CR44902
2L	18297595	2L_18297595_SNP [dm3] 2L_18297595_SNP [dm6]	T	C	4.360e^-4	0.943	DOWNSTREAM CG5790 INTERGENIC
2L	4050101	2L_4050101_SNP [dm3] 2L_4050101_SNP [dm6]	T	C	4.379e^-4	0.943	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4892318	2L_4892318_SNP [dm3] 2L_4892318_SNP [dm6]	C	A	4.386e^-4	0.943	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	18087684	3R_18087684_SNP [dm3] 3R_22261962_SNP [dm6]	C	T	4.390e^-4	0.943	INTRON SKIP
2R	4484309	2R_4484309_SNP [dm3] 2R_8596804_SNP [dm6]	C	T	4.390e^-4	0.943	DOWNSTREAM CG8735 INTERGENIC
X	20473886	X_20473886_SNP [dm3] X_20602859_SNP [dm6]	C	G	4.400e^-4	0.943	INTRON RunxA
2R	14781469	2R_14781469_SNP [dm3] 2R_18893964_SNP [dm6]	T	G	4.416e^-4	0.943	INTRON sano
2L	9258476	2L_9258476_SNP [dm3] 2L_9258476_SNP [dm6]	G	T	4.424e^-4	0.943	INTRON Ggamma30A
X	5971628	X_5971628_SNP [dm3] X_6077595_SNP [dm6]	G	A	4.429e^-4	0.943	UTR_5_PRIME CG4666 UPSTREAM CG4666
3L	5541762	3L_5541762_SNP [dm3] 3L_5548662_SNP [dm6]	A	T	4.431e^-4	0.943	INTRON CG10625
2R	18281874	2R_18281874_SNP [dm3] 2R_22394369_SNP [dm6]	C	T	4.432e^-4	0.943	SYNONYMOUS_CODING babos DOWNSTREAM CG13506
3R	15866132	3R_15866132_SNP [dm3] 3R_20040410_SNP [dm6]	C	T	4.442e^-4	0.943	INTRON CG17193
3R	6545353	3R_6545353_SNP [dm3] 3R_10719631_SNP [dm6]	T	G	4.470e^-4	0.943	INTERGENIC
3R	15290001	3R_15290001_SNP [dm3] 3R_19464279_SNP [dm6]	A	C	4.473e^-4	0.943	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	5982076	2L_5982076_SNP [dm3] 2L_5982076_SNP [dm6]	C	A	4.473e^-4	0.943	UPSTREAM eIF-4a INTRON eIF-4a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19182118	3R_19182118_SNP [dm3] 3R_23356396_SNP [dm6]	C	G	4.476e^-4	0.943	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9738926	2L_9738926_SNP [dm3] 2L_9738926_SNP [dm6]	A	T	4.482e^-4	0.943	INTRON Nckx30C
X	11039156	X_11039156_INS [dm3] X_11145123_INS [dm6]	T	TT	4.494e^-4	0.943	UTR_3_PRIME Ran DOWNSTREAM Ran & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18988520	3R_18988520_DEL [dm3] 3R_23162798_DEL [dm6]	CCAAC	C	4.496e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18163531	2R_18163531_SNP [dm3] 2R_22276026_SNP [dm6]	G	C	4.499e^-4	0.943	INTRON dve
X	18357250	X_18357250_SNP [dm3] X_18463217_SNP [dm6]	G	A	4.499e^-4	0.943	DOWNSTREAM CR43842 INTRON CG32547	TF binding site mE1_TFBS_inv
2L	8808703	2L_8808703_SNP [dm3] 2L_8808703_SNP [dm6]	T	C	4.508e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9808714	3L_9808714_SNP [dm3] 3L_9815614_SNP [dm6]	A	T	4.518e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
X	13868183	X_13868183_SNP [dm3] X_13974150_SNP [dm6]	G	C	4.520e^-4	0.943	INTRON mamo
2R	10198001	2R_10198001_SNP [dm3] 2R_14310496_SNP [dm6]	C	A	4.521e^-4	0.943	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	7156851	3R_7156851_SNP [dm3] 3R_11331129_SNP [dm6]	C	A	4.523e^-4	0.943	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10566462	3L_10566462_SNP [dm3] 3L_10573362_SNP [dm6]	T	A	4.527e^-4	0.943	INTRON A2bp1
3R	22278354	3R_22278354_SNP [dm3] 3R_26452632_SNP [dm6]	C	A	4.527e^-4	0.943	UTR_5_PRIME CG5447 DOWNSTREAM Hex-t2
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	4.532e^-4	0.943	UPSTREAM mir-276a EXON CR44327
3L	8420342	3L_8420342_SNP [dm3] 3L_8427242_SNP [dm6]	C	A	4.541e^-4	0.943	INTRON Cbl
3L	9639163	3L_9639163_SNP [dm3] 3L_9646063_SNP [dm6]	G	C	4.546e^-4	0.943	INTRON fry & 1 other
3R	12961273	3R_12961273_SNP [dm3] 3R_17135551_SNP [dm6]	A	T	4.546e^-4	0.943	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
3L	9808623	3L_9808623_SNP [dm3] 3L_9815523_SNP [dm6]	T	G	4.549e^-4	0.943	UPSTREAM CG43897 INTRON CG43897
3R	21773064	3R_21773064_SNP [dm3] 3R_25947342_SNP [dm6]	G	A	4.555e^-4	0.943	INTRON CCAP-R
3R	15864341	3R_15864341_DEL [dm3] 3R_20038619_DEL [dm6]	TC	T	4.557e^-4	0.943	UTR_3_PRIME CG17193
2R	11576104	2R_11576104_SNP [dm3] 2R_15688599_SNP [dm6]	G	A	4.563e^-4	0.943	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13252616	3R_13252616_SNP [dm3] 3R_17426894_SNP [dm6]	T	C	4.566e^-4	0.943	INTRON CG5873
3R	14946590	3R_14946590_SNP [dm3] 3R_19120868_SNP [dm6]	G	C	4.567e^-4	0.943	INTRON CG6040
2R	10172301	2R_10172301_SNP [dm3] 2R_14284796_SNP [dm6]	G	A	4.571e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad
2L	18952219	2L_18952219_SNP [dm3] 2L_18952219_SNP [dm6]	T	C	4.572e^-4	0.943	UTR_3_PRIME CG10621 UPSTREAM Nedd8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3238036	2R_3238036_SNP [dm3] 2R_7350531_SNP [dm6]	G	T	4.574e^-4	0.943	INTRON Dscam1	TF binding site mE1_TFBS_inv
3L	1744076	3L_1744076_SNP [dm3] 3L_1744076_SNP [dm6]	A	G	4.574e^-4	0.943	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9996381	2L_9996381_SNP [dm3] 2L_9996381_SNP [dm6]	T	C	4.578e^-4	0.943	SYNONYMOUS_CODING CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17734347	3R_17734347_SNP [dm3] 3R_21908625_SNP [dm6]	G	T	4.579e^-4	0.943	INTERGENIC
2L	4595826	2L_4595826_SNP [dm3] 2L_4595826_SNP [dm6]	C	T	4.580e^-4	0.943	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15054659	2R_15054659_SNP [dm3] 2R_19167154_SNP [dm6]	A	C	4.590e^-4	0.943	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11612126	3R_11612126_SNP [dm3] 3R_15786404_SNP [dm6]	T	C	4.592e^-4	0.943	UPSTREAM CG9590 INTERGENIC
3R	8998358	3R_8998358_SNP [dm3] 3R_13172636_SNP [dm6]	A	T	4.592e^-4	0.943	INTERGENIC
3R	21017838	3R_21017838_SNP [dm3] 3R_25192116_SNP [dm6]	G	A	4.597e^-4	0.943	SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17803391	3R_17803391_SNP [dm3] 3R_21977669_SNP [dm6]	C	T	4.598e^-4	0.943	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25314857	3R_25314857_SNP [dm3] 3R_29489135_SNP [dm6]	A	G	4.600e^-4	0.943	SYNONYMOUS_CODING CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15549361	X_15549361_SNP [dm3] X_15655328_SNP [dm6]	C	T	4.608e^-4	0.943	INTERGENIC
2R	13628240	2R_13628240_SNP [dm3] 2R_17740735_SNP [dm6]	C	T	4.616e^-4	0.943	SPLICE_SITE_REGION CG4996 INTRON CG4996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	6246461	3R_6246461_SNP [dm3] 3R_10420739_SNP [dm6]	G	T	4.619e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6954530	3L_6954530_SNP [dm3] 3L_6961430_SNP [dm6]	T	A	4.633e^-4	0.943	INTRON sgl
3R	19402987	3R_19402987_SNP [dm3] 3R_23577265_SNP [dm6]	G	T	4.634e^-4	0.943	INTRON beat-IV
2L	6038063	2L_6038063_INS [dm3] 2L_6038063_INS [dm6]	T	CACTTTATTAG...	4.649e^-4	0.943	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6038086	2L_6038086_SNP [dm3] 2L_6038086_SNP [dm6]	A	G	4.649e^-4	0.943	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16148691	3L_16148691_SNP [dm3] 3L_16155591_SNP [dm6]	T	C	4.652e^-4	0.943	INTRON CG5151
X	8427048	X_8427048_SNP [dm3] X_8533015_SNP [dm6]	G	C	4.656e^-4	0.943	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9329539	2L_9329539_SNP [dm3] 2L_9329539_SNP [dm6]	C	T	4.658e^-4	0.943	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
3L	10242179	3L_10242179_SNP [dm3] 3L_10249079_SNP [dm6]	A	T	4.674e^-4	0.943	UPSTREAM CR44540 INTERGENIC
3L	17919786	3L_17919786_SNP [dm3] 3L_17926686_SNP [dm6]	G	A	4.681e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7599224	2R_7599224_SNP [dm3] 2R_11711719_SNP [dm6]	T	C	4.682e^-4	0.943	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6336738	2R_6336738_SNP [dm3] 2R_10449233_SNP [dm6]	T	C	4.684e^-4	0.943	DOWNSTREAM Cyp49a1 INTRON Galphao
X	9270059	X_9270059_SNP [dm3] X_9376026_SNP [dm6]	C	T	4.688e^-4	0.943	INTRON mgl
3R	17642413	3R_17642413_SNP [dm3] 3R_21816691_SNP [dm6]	T	A	4.707e^-4	0.943	INTRON CASK
3R	25276344	3R_25276344_SNP [dm3] 3R_29450622_SNP [dm6]	C	A	4.708e^-4	0.943	INTRON Ptp99A
3R	12752620	3R_12752620_SNP [dm3] 3R_16926898_SNP [dm6]	C	A	4.712e^-4	0.943	DOWNSTREAM Abd-B INTERGENIC
2R	6672438	2R_6672438_SNP [dm3] 2R_10784933_SNP [dm6]	A	G	4.712e^-4	0.943	DOWNSTREAM CR44300 INTRON CG33144 EXON CR44299
3L	9648296	3L_9648296_SNP [dm3] 3L_9655196_SNP [dm6]	A	G	4.756e^-4	0.943	INTRON fry & 1 other
3R	23114422	3R_23114422_SNP [dm3] 3R_27288700_SNP [dm6]	T	C	4.767e^-4	0.943	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	12285221	3L_12285221_SNP [dm3] 3L_12292121_SNP [dm6]	A	T	4.775e^-4	0.943	INTRON CG4328	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	17360368	2R_17360368_SNP [dm3] 2R_21472863_SNP [dm6]	C	A	4.784e^-4	0.943	INTRON Sdc
X	16699793	X_16699793_SNP [dm3] X_16805760_SNP [dm6]	G	A	4.803e^-4	0.943	UPSTREAM ppk28 DOWNSTREAM CR44053 & 1 other INTERGENIC
3L	15921024	3L_15921024_SNP [dm3] 3L_15927924_SNP [dm6]	A	G	4.808e^-4	0.943	SPLICE_SITE_REGION Pka-C3 INTRON Pka-C3
X	2523662	X_2523662_SNP [dm3] X_2629629_SNP [dm6]	C	A	4.809e^-4	0.943	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	4.819e^-4	0.943	INTERGENIC
2R	7599261	2R_7599261_SNP [dm3] 2R_11711756_SNP [dm6]	T	G	4.820e^-4	0.943	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7599263	2R_7599263_SNP [dm3] 2R_11711758_SNP [dm6]	C	A	4.820e^-4	0.943	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7599265	2R_7599265_SNP [dm3] 2R_11711760_SNP [dm6]	G	T	4.820e^-4	0.943	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25500821	3R_25500821_SNP [dm3] 3R_29675099_SNP [dm6]	T	A	4.823e^-4	0.943	UPSTREAM Cap-D2 DOWNSTREAM ppk19 INTRON Bub3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25500902	3R_25500902_SNP [dm3] 3R_29675180_SNP [dm6]	C	T	4.823e^-4	0.943	SYNONYMOUS_CODING Bub3 UPSTREAM Cap-D2 DOWNSTREAM ppk19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19108589	3R_19108589_SNP [dm3] 3R_23282867_SNP [dm6]	T	C	4.831e^-4	0.943	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20332599	2L_20332599_SNP [dm3] 2L_20332599_SNP [dm6]	G	A	4.838e^-4	0.943	INTRON spir	TF binding site BDTNP1_TFBS_da
2L	4892227	2L_4892227_SNP [dm3] 2L_4892227_SNP [dm6]	A	G	4.842e^-4	0.943	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	11330223	3R_11330223_SNP [dm3] 3R_15504501_SNP [dm6]	G	T	4.843e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10370910	2R_10370910_SNP [dm3] 2R_14483405_SNP [dm6]	A	C	4.848e^-4	0.943	INTRON L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3093552	2L_3093552_SNP [dm3] 2L_3093552_SNP [dm6]	T	C	4.854e^-4	0.943	INTRON toc
3R	25761351	3R_25761351_SNP [dm3] 3R_29935629_SNP [dm6]	T	A	4.855e^-4	0.943	SPLICE_SITE_REGION eIF2B-alpha UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8808621	2L_8808621_SNP [dm3] 2L_8808621_SNP [dm6]	T	A	4.863e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12161134	2L_12161134_INS [dm3] 2L_12161134_INS [dm6]	G	GC	4.873e^-4	0.943	UPSTREAM CG31861 INTRON CG31760
3L	2226118	3L_2226118_SNP [dm3] 3L_2226118_SNP [dm6]	C	G	4.904e^-4	0.943	INTERGENIC
3R	15561080	3R_15561080_SNP [dm3] 3R_19735358_SNP [dm6]	A	C	4.922e^-4	0.943	INTRON GluClalpha
2L	19821350	2L_19821350_SNP [dm3] 2L_19821350_SNP [dm6]	G	C	4.924e^-4	0.943	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1520986	3L_1520986_SNP [dm3] 3L_1520986_SNP [dm6]	G	C	4.930e^-4	0.943	INTRON Psa	TF binding site mE1_TFBS_cad
3R	7156852	3R_7156852_SNP [dm3] 3R_11331130_SNP [dm6]	C	A	4.931e^-4	0.943	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16541451	2L_16541451_SNP [dm3] 2L_16541451_SNP [dm6]	G	C	4.933e^-4	0.943	INTERGENIC
3R	26460046	3R_26460046_DEL [dm3] 3R_30634324_DEL [dm6]	TT	T	4.934e^-4	0.943	INTERGENIC
3L	17920325	3L_17920325_SNP [dm3] 3L_17927225_SNP [dm6]	A	G	4.941e^-4	0.943	INTERGENIC
3L	3462186	3L_3462186_SNP [dm3] 3L_3462186_SNP [dm6]	G	A	4.941e^-4	0.943	UTR_5_PRIME armi UPSTREAM armi
3R	26464479	3R_26464479_SNP [dm3] 3R_30638757_SNP [dm6]	T	G	4.957e^-4	0.943	INTERGENIC
2R	9274136	2R_9274136_SNP [dm3] 2R_13386631_SNP [dm6]	T	C	4.959e^-4	0.943	INTERGENIC
2R	7446759	2R_7446759_SNP [dm3] 2R_11559254_SNP [dm6]	T	C	4.971e^-4	0.943	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20751383	X_20751383_SNP [dm3] X_20880356_SNP [dm6]	G	A	4.974e^-4	0.943	INTRON shakB	transposable element FlyBase
2L	8486969	2L_8486969_SNP [dm3] 2L_8486969_SNP [dm6]	G	A	4.976e^-4	0.943	SYNONYMOUS_CODING d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7451668	2R_7451668_SNP [dm3] 2R_11564163_SNP [dm6]	C	T	4.977e^-4	0.943	INTERGENIC
2L	17187635	2L_17187635_SNP [dm3] 2L_17187635_SNP [dm6]	T	C	4.979e^-4	0.943	DOWNSTREAM beat-IIIc INTERGENIC
3R	21273292	3R_21273292_SNP [dm3] 3R_25447570_SNP [dm6]	T	A	4.981e^-4	0.943	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	8520208	X_8520208_INS [dm3] X_8626175_INS [dm6]	A	AA	5.007e^-4	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14724032	3L_14724032_SNP [dm3] 3L_14730932_SNP [dm6]	C	A	5.016e^-4	0.943	INTRON ome
3L	5931548	3L_5931548_INS [dm3] 3L_5938448_INS [dm6]	T	TATATGCGTGTTTGAGT...	5.018e^-4	0.943	INTRON CG33993
X	11039220	X_11039220_SNP [dm3] X_11145187_SNP [dm6]	G	T	5.029e^-4	0.943	UTR_3_PRIME Ran DOWNSTREAM Ran & 1 other	TF binding site BDTNP1_TFBS_dl
X	7645300	X_7645300_SNP [dm3] X_7751267_SNP [dm6]	G	C	5.039e^-4	0.943	INTERGENIC
X	7645305	X_7645305_SNP [dm3] X_7751272_SNP [dm6]	T	G	5.039e^-4	0.943	INTERGENIC
X	7645318	X_7645318_SNP [dm3] X_7751285_SNP [dm6]	G	A	5.039e^-4	0.943	INTERGENIC
X	7645320	X_7645320_SNP [dm3] X_7751287_SNP [dm6]	G	A	5.039e^-4	0.943	INTERGENIC
X	7645339	X_7645339_SNP [dm3] X_7751306_SNP [dm6]	A	G	5.039e^-4	0.943	INTERGENIC
X	7645371	X_7645371_SNP [dm3] X_7751338_SNP [dm6]	T	A	5.039e^-4	0.943	INTERGENIC
X	7645394	X_7645394_SNP [dm3] X_7751361_SNP [dm6]	A	G	5.039e^-4	0.943	INTERGENIC
X	7645407	X_7645407_SNP [dm3] X_7751374_SNP [dm6]	A	T	5.039e^-4	0.943	INTERGENIC
X	7645419	X_7645419_SNP [dm3] X_7751386_SNP [dm6]	T	C	5.039e^-4	0.943	INTERGENIC
X	7645537	X_7645537_SNP [dm3] X_7751504_SNP [dm6]	C	T	5.039e^-4	0.943	INTERGENIC
X	7646091	X_7646091_SNP [dm3] X_7752058_SNP [dm6]	A	C	5.039e^-4	0.943	INTERGENIC
X	7646211	X_7646211_SNP [dm3] X_7752178_SNP [dm6]	A	G	5.039e^-4	0.943	INTERGENIC
3R	12160898	3R_12160898_DEL [dm3] 3R_16335176_DEL [dm6]	ATACAATTTACTAT...	TG	5.044e^-4	0.943	INTRON Sulf1
3R	19184373	3R_19184373_SNP [dm3] 3R_23358651_SNP [dm6]	G	T	5.044e^-4	0.943	UPSTREAM RpS3 DOWNSTREAM Sec13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23470905	3R_23470905_SNP [dm3] 3R_27645183_SNP [dm6]	G	T	5.060e^-4	0.943	INTRON tau	TF binding site BDTNP1_TFBS_prd
2R	12616700	2R_12616700_SNP [dm3] 2R_16729195_SNP [dm6]	A	T	5.060e^-4	0.943	INTRON CG30463
2L	20320940	2L_20320940_SNP [dm3] 2L_20320940_SNP [dm6]	C	G	5.081e^-4	0.943	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21133956	X_21133956_INS [dm3] X_21262929_INS [dm6]	A	ATGTA	5.086e^-4	0.943	INTRON CG32521
X	21133975	X_21133975_SNP [dm3] X_21262948_SNP [dm6]	T	A	5.086e^-4	0.943	INTRON CG32521
2L	18847636	2L_18847636_SNP [dm3] 2L_18847636_SNP [dm6]	A	C	5.091e^-4	0.943	INTRON CG17321
3L	20269707	3L_20269707_SNP [dm3] 3L_20276607_SNP [dm6]	G	A	5.091e^-4	0.943	INTRON gogo
3L	15918536	3L_15918536_SNP [dm3] 3L_15925436_SNP [dm6]	C	T	5.095e^-4	0.943	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4892590	2L_4892590_SNP [dm3] 2L_4892590_SNP [dm6]	A	G	5.110e^-4	0.943	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5278807	2L_5278807_SNP [dm3] 2L_5278807_SNP [dm6]	A	T	5.116e^-4	0.943	UPSTREAM Bub1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14895174	3R_14895174_SNP [dm3] 3R_19069452_SNP [dm6]	T	C	5.121e^-4	0.943	INTRON cdi
2L	9738908	2L_9738908_SNP [dm3] 2L_9738908_SNP [dm6]	C	A	5.124e^-4	0.943	INTRON Nckx30C
3R	17008328	3R_17008328_SNP [dm3] 3R_21182606_SNP [dm6]	T	A	5.125e^-4	0.943	INTRON SNF4Agamma
3R	12675257	3R_12675257_SNP [dm3] 3R_16849535_SNP [dm6]	G	A	5.136e^-4	0.943	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25276285	3R_25276285_DEL [dm3] 3R_29450563_DEL [dm6]	TGAGCACCTCAGT...	T	5.136e^-4	0.943	INTRON Ptp99A
3R	25276304	3R_25276304_DEL [dm3] 3R_29450582_DEL [dm6]	AA	A	5.136e^-4	0.943	INTRON Ptp99A
3R	25069988	3R_25069988_SNP [dm3] 3R_29244266_SNP [dm6]	A	C	5.147e^-4	0.943	DOWNSTREAM SP1029 INTRON CG31445
3R	25316217	3R_25316217_SNP [dm3] 3R_29490495_SNP [dm6]	C	T	5.148e^-4	0.943	SYNONYMOUS_CODING CG2006 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med
3L	15581339	3L_15581339_SNP [dm3] 3L_15588239_SNP [dm6]	T	A	5.152e^-4	0.943	UPSTREAM RhoGAP71E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10099449	2R_10099449_SNP [dm3] 2R_14211944_SNP [dm6]	A	G	5.157e^-4	0.943	UTR_5_PRIME Sox15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15561128	3R_15561128_SNP [dm3] 3R_19735406_SNP [dm6]	C	T	5.165e^-4	0.943	INTRON GluClalpha
2L	8996880	2L_8996880_SNP [dm3] 2L_8996880_SNP [dm6]	A	G	5.174e^-4	0.943	UPSTREAM CG18661 INTRON alien	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15852672	3R_15852672_SNP [dm3] 3R_20026950_SNP [dm6]	G	A	5.178e^-4	0.943	DOWNSTREAM psidin INTRON CG4424
X	7645211	X_7645211_SNP [dm3] X_7751178_SNP [dm6]	T	C	5.178e^-4	0.943	INTERGENIC
3R	3881029	3R_3881029_SNP [dm3] 3R_8055307_SNP [dm6]	A	T	5.190e^-4	0.943	UTR_3_PRIME CG43060
2L	19944459	2L_19944459_SNP [dm3] 2L_19944459_SNP [dm6]	G	A	5.193e^-4	0.943	INTRON sick	TF binding site mE1_TFBS_cad
2L	2596794	2L_2596794_SNP [dm3] 2L_2596794_SNP [dm6]	A	T	5.205e^-4	0.943	INTERGENIC
3R	16018269	3R_16018269_SNP [dm3] 3R_20192547_SNP [dm6]	A	T	5.212e^-4	0.943	INTERGENIC
X	13809293	X_13809293_INS [dm3] X_13915260_INS [dm6]	T	TT	5.212e^-4	0.943	UTR_5_PRIME mamo INTRON mamo
2R	7599258	2R_7599258_SNP [dm3] 2R_11711753_SNP [dm6]	C	A	5.222e^-4	0.943	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4364254	3L_4364254_SNP [dm3] 3L_4364254_SNP [dm6]	A	C	5.229e^-4	0.943	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18189610	2L_18189610_SNP [dm3] 2L_18189610_SNP [dm6]	A	G	5.250e^-4	0.943	INTRON CG42750
3L	15918576	3L_15918576_INS [dm3] 3L_15925476_INS [dm6]	G	GAGAAAAATAAAAGTTTAAA...	5.254e^-4	0.943	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16822781	2R_16822781_SNP [dm3] 2R_20935276_SNP [dm6]	G	A	5.262e^-4	0.943	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4593266	2L_4593266_SNP [dm3] 2L_4593266_SNP [dm6]	A	G	5.264e^-4	0.943	INTRON dp
2R	10171890	2R_10171890_SNP [dm3] 2R_14284385_SNP [dm6]	G	T	5.264e^-4	0.943	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18425298	2L_18425298_SNP [dm3] 2L_18425298_SNP [dm6]	G	C	5.265e^-4	0.943	INTERGENIC
3R	5975324	3R_5975324_SNP [dm3] 3R_10149602_SNP [dm6]	C	G	5.267e^-4	0.943	INTRON Invadolysin
2L	13274275	2L_13274275_SNP [dm3] 2L_13274275_SNP [dm6]	G	T	5.271e^-4	0.943	INTRON CG44085
3R	22634946	3R_22634946_SNP [dm3] 3R_26809224_SNP [dm6]	A	T	5.272e^-4	0.943	INTRON Tl
3R	25070395	3R_25070395_SNP [dm3] 3R_29244673_SNP [dm6]	G	A	5.273e^-4	0.943	UTR_5_PRIME CG31445 UPSTREAM CG31445 DOWNSTREAM SP1029
3R	15861890	3R_15861890_SNP [dm3] 3R_20036168_SNP [dm6]	G	A	5.276e^-4	0.943	UPSTREAM CG10889 DOWNSTREAM CG17193 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13656715	3R_13656715_SNP [dm3] 3R_17830993_SNP [dm6]	A	T	5.282e^-4	0.943	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26964798	3R_26964798_SNP [dm3] 3R_31139076_SNP [dm6]	C	T	5.288e^-4	0.943	INTRON Gycbeta100B
X	21872869	X_21872869_SNP [dm3] X_22471033_SNP [dm6]	G	A	5.291e^-4	0.943	DOWNSTREAM CG14619 INTRON CG14613	TF binding site mE1_TFBS_cad
2L	18424823	2L_18424823_SNP [dm3] 2L_18424823_SNP [dm6]	C	T	5.292e^-4	0.943	INTERGENIC
2R	17360323	2R_17360323_SNP [dm3] 2R_21472818_SNP [dm6]	A	T	5.293e^-4	0.943	INTRON Sdc
2L	20328771	2L_20328771_SNP [dm3] 2L_20328771_SNP [dm6]	G	A	5.296e^-4	0.943	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11626569	X_11626569_SNP [dm3] X_11732536_SNP [dm6]	A	T	5.296e^-4	0.943	NON_SYNONYMOUS_CODING inaF-B UPSTREAM inaF-C INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
X	11626594	X_11626594_SNP [dm3] X_11732561_SNP [dm6]	A	G	5.296e^-4	0.943	SYNONYMOUS_CODING inaF-B UPSTREAM inaF-C INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
2L	20388849	2L_20388849_SNP [dm3] 2L_20388849_SNP [dm6]	T	C	5.298e^-4	0.943	INTRON CG10947
2L	7636854	2L_7636854_SNP [dm3] 2L_7636854_SNP [dm6]	T	G	5.301e^-4	0.943	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10749862	X_10749862_SNP [dm3] X_10855829_SNP [dm6]	G	C	5.304e^-4	0.943	SYNONYMOUS_CODING sofe UPSTREAM feo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1824632	3L_1824632_SNP [dm3] 3L_1824632_SNP [dm6]	G	T	5.307e^-4	0.943	NON_SYNONYMOUS_CODING Cpr62Ba
2R	3682955	2R_3682955_SNP [dm3] 2R_7795450_SNP [dm6]	T	G	5.311e^-4	0.943	INTRON mus205
2L	6834723	2L_6834723_SNP [dm3] 2L_6834723_SNP [dm6]	T	C	5.314e^-4	0.943	INTRON sens-2	TF binding site BDTNP1_TFBS_dl
2L	2610639	2L_2610639_SNP [dm3] 2L_2610639_SNP [dm6]	C	T	5.327e^-4	0.943	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13656400	3R_13656400_DEL [dm3] 3R_17830678_DEL [dm6]	AA	A	5.331e^-4	0.943	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11041535	X_11041535_SNP [dm3] X_11147502_SNP [dm6]	T	C	5.333e^-4	0.943	UPSTREAM Ran INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16397253	2L_16397253_DEL [dm3] 2L_16397253_DEL [dm6]	CC	C	5.335e^-4	0.943	INTERGENIC
3L	2220017	3L_2220017_SNP [dm3] 3L_2220017_SNP [dm6]	C	G	5.338e^-4	0.943	INTERGENIC
2R	12851144	2R_12851144_SNP [dm3] 2R_16963639_SNP [dm6]	C	T	5.351e^-4	0.943	UPSTREAM CR44376 INTERGENIC

By genomic position
Variant impact
Gene name

Susceptibility_C_PQ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results