DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.184e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1738 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9188938	2R_9188938_SNP [dm3] 2R_13301433_SNP [dm6]	C	T	4.898e^-7	0.917	SYNONYMOUS_CODING CG17047
2R	16664008	2R_16664008_SNP [dm3] 2R_20776503_SNP [dm6]	G	C	1.253e^-6	0.917	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
3L	6385138	3L_6385138_SNP [dm3] 3L_6392038_SNP [dm6]	G	A	1.467e^-6	0.917	INTERGENIC
2R	13445244	2R_13445244_SNP [dm3] 2R_17557739_SNP [dm6]	T	C	1.996e^-6	0.935	INTRON Klp54D
3R	11717240	3R_11717240_SNP [dm3] 3R_15891518_SNP [dm6]	A	G	3.269e^-6	0.985	INTRON CG14877
2R	18619246	2R_18619246_SNP [dm3] 2R_22731741_SNP [dm6]	T	C	3.877e^-6	0.985	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9663804	2L_9663804_SNP [dm3] 2L_9663804_SNP [dm6]	T	A	6.821e^-6	0.985	INTERGENIC
2R	9180034	2R_9180034_SNP [dm3] 2R_13292529_SNP [dm6]	G	A	8.410e^-6	0.985	INTRON Dh31-R
3L	17190234	3L_17190234_DEL [dm3] 3L_17197134_DEL [dm6]	TATCT	T	8.493e^-6	0.985	INTRON Rbp6
X	9364184	X_9364184_SNP [dm3] X_9470151_SNP [dm6]	C	T	8.651e^-6	0.985	INTRON mgl
2L	2771103	2L_2771103_SNP [dm3] 2L_2771103_SNP [dm6]	C	T	1.045e^-5	0.985	SYNONYMOUS_CODING CG15399 DOWNSTREAM CG2862	TF binding site mE1_TFBS_eve mE1_TFBS_sens
X	16639487	X_16639487_SNP [dm3] X_16745454_SNP [dm6]	G	A	1.047e^-5	0.985	INTRON CG9634
3L	1832557	3L_1832557_SNP [dm3] 3L_1832557_SNP [dm6]	T	G	1.053e^-5	0.985	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
2R	9179910	2R_9179910_SNP [dm3] 2R_13292405_SNP [dm6]	T	C	1.135e^-5	0.985	INTRON Dh31-R
2R	19199701	2R_19199701_SNP [dm3] 2R_23312178_SNP [dm6]	C	T	1.179e^-5	0.985	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_inv
X	7257505	X_7257505_SNP [dm3] X_7363472_SNP [dm6]	C	A	1.191e^-5	0.985	INTRON CG1677 & 1 other
2L	4104267	2L_4104267_SNP [dm3] 2L_4104267_SNP [dm6]	A	C	1.212e^-5	0.985	INTRON ed
X	16639512	X_16639512_SNP [dm3] X_16745479_SNP [dm6]	A	T	1.236e^-5	0.985	INTRON CG9634
2L	4104289	2L_4104289_SNP [dm3] 2L_4104289_SNP [dm6]	T	A	1.402e^-5	0.985	INTRON ed
2R	9189975	2R_9189975_SNP [dm3] 2R_13302470_SNP [dm6]	T	G	1.434e^-5	0.985	DOWNSTREAM CG17047 INTERGENIC
2L	13042700	2L_13042700_SNP [dm3] 2L_13042700_SNP [dm6]	C	G	1.695e^-5	0.985	INTRON CG9932
3R	19462264	3R_19462264_SNP [dm3] 3R_23636542_SNP [dm6]	G	A	1.788e^-5	0.985	INTRON CG31145
3L	20876088	3L_20876088_SNP [dm3] 3L_20882988_SNP [dm6]	G	A	1.825e^-5	0.985	INTRON CG32432
3L	17185700	3L_17185700_SNP [dm3] 3L_17192600_SNP [dm6]	C	T	1.844e^-5	0.985	INTRON Rbp6
3L	20868545	3L_20868545_SNP [dm3] 3L_20875445_SNP [dm6]	A	T	1.863e^-5	0.985	INTRON CG32432
2R	13443145	2R_13443145_SNP [dm3] 2R_17555640_SNP [dm6]	G	A	1.924e^-5	0.985	NON_SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	17653078	2L_17653078_SNP [dm3] 2L_17653078_SNP [dm6]	G	A	1.962e^-5	0.985	INTRON CadN
2R	13435278	2R_13435278_SNP [dm3] 2R_17547773_SNP [dm6]	C	T	2.128e^-5	0.985	START_GAINED MESR4 UTR_5_PRIME MESR4 UPSTREAM MESR4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	7257488	X_7257488_SNP [dm3] X_7363455_SNP [dm6]	T	A	2.180e^-5	0.985	INTRON CG1677 & 1 other
2L	4061681	2L_4061681_SNP [dm3] 2L_4061681_SNP [dm6]	T	G	2.413e^-5	0.985	INTRON ed
2R	9190091	2R_9190091_SNP [dm3] 2R_13302586_SNP [dm6]	G	T	2.447e^-5	0.985	INTERGENIC
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	2.473e^-5	0.985	INTRON bol
X	17125403	X_17125403_SNP [dm3] X_17231370_SNP [dm6]	A	C	2.500e^-5	0.985	UPSTREAM CG10597 INTERGENIC
2R	13436891	2R_13436891_SNP [dm3] 2R_17549386_SNP [dm6]	A	G	2.553e^-5	0.985	SYNONYMOUS_CODING MESR4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	6375313	2R_6375313_SNP [dm3] 2R_10487808_SNP [dm6]	G	T	2.557e^-5	0.985	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21952537	2L_21952537_SNP [dm3] 2L_21952537_SNP [dm6]	T	C	2.699e^-5	0.985	INTERGENIC
2R	10480943	2R_10480943_SNP [dm3] 2R_14593438_SNP [dm6]	T	C	2.708e^-5	0.985	SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4399270	2L_4399270_SNP [dm3] 2L_4399270_SNP [dm6]	C	G	2.711e^-5	0.985	NON_SYNONYMOUS_CODING l_2_k05819
2L	18653594	2L_18653594_SNP [dm3] 2L_18653594_SNP [dm6]	C	A	2.746e^-5	0.985	UPSTREAM Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15468685	X_15468685_SNP [dm3] X_15574652_SNP [dm6]	A	C	2.887e^-5	0.985	UPSTREAM CG9213 DOWNSTREAM CG42299 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18482292	2L_18482292_SNP [dm3] 2L_18482292_SNP [dm6]	A	T	2.916e^-5	0.985	INTRON CG10283
2R	17837404	2R_17837404_SNP [dm3] 2R_21949899_SNP [dm6]	G	A	2.922e^-5	0.985	INTERGENIC
X	16639531	X_16639531_SNP [dm3] X_16745498_SNP [dm6]	G	T	2.937e^-5	0.985	INTRON CG9634
3L	1832610	3L_1832610_SNP [dm3] 3L_1832610_SNP [dm6]	G	A	2.992e^-5	0.985	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
2L	14001873	2L_14001873_SNP [dm3] 2L_14001873_SNP [dm6]	T	G	3.216e^-5	0.985	UPSTREAM rk INTERGENIC
3R	20842601	3R_20842601_SNP [dm3] 3R_25016879_SNP [dm6]	G	A	3.250e^-5	0.985	SYNONYMOUS_CODING tnc
2R	17095181	2R_17095181_SNP [dm3] 2R_21207676_SNP [dm6]	T	C	3.256e^-5	0.985	INTRON CG44245 & 1 other
X	16639520	X_16639520_SNP [dm3] X_16745487_SNP [dm6]	A	T	3.285e^-5	0.985	INTRON CG9634
2R	12302245	2R_12302245_SNP [dm3] 2R_16414740_SNP [dm6]	A	G	3.330e^-5	0.985	DOWNSTREAM Menl-2 & 1 other INTRON Sema-2b
X	19900547	X_19900547_INS [dm3] X_20006514_INS [dm6]	T	TT	3.364e^-5	0.985	UTR_3_PRIME Dop2R
X	15262101	X_15262101_DEL [dm3] X_15368068_DEL [dm6]	CCTCGGTCAGGCGCCCC...	C	3.517e^-5	0.985	INTRON acj6
2R	13432176	2R_13432176_DEL [dm3] 2R_17544671_DEL [dm6]	CGCGCCACC	C	3.572e^-5	0.985	UPSTREAM cyp33 DOWNSTREAM CG43370 INTRON CG34194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	4062542	2L_4062542_SNP [dm3] 2L_4062542_SNP [dm6]	T	G	3.658e^-5	0.985	INTRON ed
3L	20876089	3L_20876089_SNP [dm3] 3L_20882989_SNP [dm6]	C	T	3.776e^-5	0.985	INTRON CG32432
2R	13444959	2R_13444959_SNP [dm3] 2R_17557454_SNP [dm6]	G	A	3.793e^-5	0.985	SYNONYMOUS_CODING Klp54D
X	1995606	X_1995606_INS [dm3] X_2101573_INS [dm6]	C	CC	3.804e^-5	0.985	UPSTREAM snoRNA:Me18S-C1024 & 1 other INTRON csw
2R	12302243	2R_12302243_SNP [dm3] 2R_16414738_SNP [dm6]	C	T	3.837e^-5	0.985	DOWNSTREAM Menl-2 & 1 other INTRON Sema-2b
3L	9952020	3L_9952020_SNP [dm3] 3L_9958920_SNP [dm6]	C	T	3.846e^-5	0.985	INTRON CG34356
2R	8782916	2R_8782916_SNP [dm3] 2R_12895411_SNP [dm6]	A	G	4.212e^-5	0.985	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6568900	2R_6568900_SNP [dm3] 2R_10681395_SNP [dm6]	G	A	4.319e^-5	0.985	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6882706	X_6882706_SNP [dm3] X_6988673_SNP [dm6]	C	A	4.349e^-5	0.985	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6362486	X_6362486_SNP [dm3] X_6468453_SNP [dm6]	C	T	4.363e^-5	0.985	SYNONYMOUS_CODING CG42340	TF binding site mE1_TFBS_chinmo
3R	4030841	3R_4030841_SNP [dm3] 3R_8205119_SNP [dm6]	T	C	4.387e^-5	0.985	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8889160	2L_8889160_SNP [dm3] 2L_8889160_SNP [dm6]	C	T	4.390e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	15907859	2L_15907859_INS [dm3] 2L_15907859_INS [dm6]	A	TTTTTTTTTGCT...	4.651e^-5	0.985	INTRON beat-Ib
X	15550283	X_15550283_SNP [dm3] X_15656250_SNP [dm6]	G	A	4.681e^-5	0.985	INTERGENIC
2L	7755850	2L_7755850_DEL [dm3] 2L_7755850_DEL [dm6]	CGAGGGC	C	4.687e^-5	0.985	UPSTREAM CG14538 INTRON CG7196
X	6168949	X_6168949_SNP [dm3] X_6274916_SNP [dm6]	A	G	4.983e^-5	0.985	UTR_3_PRIME Spt6 DOWNSTREAM CG3566 & 1 other
2L	6177989	2L_6177989_SNP [dm3] 2L_6177989_SNP [dm6]	T	G	5.013e^-5	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	2515087	2L_2515087_SNP [dm3] 2L_2515087_SNP [dm6]	G	T	5.014e^-5	0.985	INTERGENIC
2R	13436094	2R_13436094_DEL [dm3] 2R_17548589_DEL [dm6]	AT	A	5.063e^-5	0.985	INTRON MESR4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13445298	2R_13445298_SNP [dm3] 2R_17557793_SNP [dm6]	A	T	5.122e^-5	0.985	INTRON Klp54D
X	12868567	X_12868567_DEL [dm3] X_12974534_DEL [dm6]	TT	T	5.178e^-5	0.985	DOWNSTREAM CG12716 & 1 other EXON CR43152
2R	19317162	2R_19317162_SNP [dm3] 2R_23429639_SNP [dm6]	A	G	5.189e^-5	0.985	INTRON CG9815
3L	3002787	3L_3002787_SNP [dm3] 3L_3002787_SNP [dm6]	C	T	5.423e^-5	0.985	UPSTREAM FMRFaR INTRON FMRFaR
2R	9179945	2R_9179945_SNP [dm3] 2R_13292440_SNP [dm6]	A	T	5.425e^-5	0.985	INTRON Dh31-R
X	15550239	X_15550239_SNP [dm3] X_15656206_SNP [dm6]	G	T	5.543e^-5	0.985	INTERGENIC
2R	13432572	2R_13432572_SNP [dm3] 2R_17545067_SNP [dm6]	G	T	5.619e^-5	0.985	UPSTREAM cyp33 DOWNSTREAM CG43370 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	16639257	X_16639257_SNP [dm3] X_16745224_SNP [dm6]	A	G	5.631e^-5	0.985	DOWNSTREAM Twdlalpha INTRON CG9634	TF binding site mE1_TFBS_HSA
2L	17457918	2L_17457918_SNP [dm3] 2L_17457918_SNP [dm6]	T	A	5.663e^-5	0.985	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050
2L	16968287	2L_16968287_DEL [dm3] 2L_16968287_DEL [dm6]	GTTCAATGAGACAACCATTT...	G	5.700e^-5	0.985	INTERGENIC
2R	13157081	2R_13157081_SNP [dm3] 2R_17269576_SNP [dm6]	G	C	5.711e^-5	0.985	INTRON mbl	TF binding site mE1_TFBS_run
2R	7824515	2R_7824515_SNP [dm3] 2R_11937010_SNP [dm6]	C	T	5.736e^-5	0.985	INTERGENIC
2L	17544905	2L_17544905_SNP [dm3] 2L_17544905_SNP [dm6]	T	C	5.782e^-5	0.985	INTERGENIC
X	8714016	X_8714016_SNP [dm3] X_8819983_SNP [dm6]	T	C	5.788e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9971639	2R_9971639_SNP [dm3] 2R_14084134_SNP [dm6]	C	G	5.881e^-5	0.985	INTRON Prosap
2L	15000579	2L_15000579_SNP [dm3] 2L_15000579_SNP [dm6]	G	A	6.001e^-5	0.985	INTERGENIC
3R	15373339	3R_15373339_SNP [dm3] 3R_19547617_SNP [dm6]	C	T	6.130e^-5	0.985	INTRON Dys
X	18427433	X_18427433_SNP [dm3] X_18533400_SNP [dm6]	A	T	6.188e^-5	0.985	INTRON Bx	TF binding site BDTNP1_TFBS_dl
2L	17715881	2L_17715881_SNP [dm3] 2L_17715881_SNP [dm6]	G	T	6.209e^-5	0.985	SYNONYMOUS_CODING CadN INTRON CadN	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	19969716	X_19969716_SNP [dm3] X_20075683_SNP [dm6]	T	C	6.214e^-5	0.985	INTERGENIC
X	12094259	X_12094259_SNP [dm3] X_12200226_SNP [dm6]	A	G	6.233e^-5	0.985	INTRON Ten-a
3L	2404684	3L_2404684_SNP [dm3] 3L_2404684_SNP [dm6]	G	A	6.320e^-5	0.985	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	17165728	3L_17165728_SNP [dm3] 3L_17172628_SNP [dm6]	C	A	6.340e^-5	0.985	INTRON Rbp6
2R	6894922	2R_6894922_SNP [dm3] 2R_11007417_SNP [dm6]	T	G	6.392e^-5	0.985	INTRON luna
2R	13387101	2R_13387101_DEL [dm3] 2R_17499596_DEL [dm6]	TGGCAGCA	T	6.427e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26869336	3R_26869336_SNP [dm3] 3R_31043614_SNP [dm6]	T	C	6.430e^-5	0.985	DOWNSTREAM CG33920 INTRON CanA1
2L	9937742	2L_9937742_SNP [dm3] 2L_9937742_SNP [dm6]	G	A	6.500e^-5	0.985	SYNONYMOUS_CODING CG31712 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	17553016	2R_17553016_SNP [dm3] 2R_21665511_SNP [dm6]	A	T	6.560e^-5	0.985	NON_SYNONYMOUS_CODING CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2L	17457895	2L_17457895_SNP [dm3] 2L_17457895_SNP [dm6]	T	A	6.582e^-5	0.985	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050
3L	15405133	3L_15405133_SNP [dm3] 3L_15412033_SNP [dm6]	G	A	6.621e^-5	0.985	INTERGENIC
3R	5792271	3R_5792271_SNP [dm3] 3R_9966549_SNP [dm6]	C	G	6.631e^-5	0.985	INTRON Glut4EF
2L	3550257	2L_3550257_INS [dm3] 2L_3550257_INS [dm6]	T	TGACATTTT	6.638e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	6.687e^-5	0.985	INTRON bol
2R	17714403	2R_17714403_SNP [dm3] 2R_21826898_SNP [dm6]	A	G	6.692e^-5	0.985	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8889198	2L_8889198_SNP [dm3] 2L_8889198_SNP [dm6]	G	T	6.736e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	12698300	3L_12698300_SNP [dm3] 3L_12705200_SNP [dm6]	G	T	6.802e^-5	0.985	INTRON mirr
X	7257467	X_7257467_SNP [dm3] X_7363434_SNP [dm6]	A	T	6.848e^-5	0.985	INTRON CG1677 & 1 other
3R	8158140	3R_8158140_SNP [dm3] 3R_12332418_SNP [dm6]	C	T	6.908e^-5	0.985	INTERGENIC
2L	17251674	2L_17251674_SNP [dm3] 2L_17251674_SNP [dm6]	G	T	6.929e^-5	0.985	INTRON beat-IIIc
2L	9468807	2L_9468807_SNP [dm3] 2L_9468807_SNP [dm6]	T	A	6.954e^-5	0.985	INTERGENIC
3L	17172641	3L_17172641_INS [dm3] 3L_17179541_INS [dm6]	A	AG	7.053e^-5	0.985	INTRON Rbp6
2R	10450197	2R_10450197_SNP [dm3] 2R_14562692_SNP [dm6]	T	C	7.100e^-5	0.985	INTRON ttv
3R	4030842	3R_4030842_SNP [dm3] 3R_8205120_SNP [dm6]	A	T	7.166e^-5	0.985	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19568721	2R_19568721_SNP [dm3] 2R_23681198_SNP [dm6]	A	T	7.177e^-5	0.985	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3L	16264757	3L_16264757_SNP [dm3] 3L_16271657_SNP [dm6]	G	T	7.211e^-5	0.985	UTR_3_PRIME CG13067 UPSTREAM CG34248	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15260613	2R_15260613_SNP [dm3] 2R_19373108_SNP [dm6]	A	G	7.347e^-5	0.985	UTR_5_PRIME CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17095184	2R_17095184_SNP [dm3] 2R_21207679_SNP [dm6]	G	T	7.394e^-5	0.985	INTRON CG44245 & 1 other
2L	21958368	2L_21958368_SNP [dm3] 2L_21958368_SNP [dm6]	G	A	7.396e^-5	0.985	UPSTREAM CR44803 DOWNSTREAM CR44217 INTERGENIC
3R	19925258	3R_19925258_SNP [dm3] 3R_24099536_SNP [dm6]	G	C	7.424e^-5	0.985	INTRON 4EHP
2L	14558617	2L_14558617_SNP [dm3] 2L_14558617_SNP [dm6]	T	A	7.515e^-5	0.985	INTRON CR44854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13511677	X_13511677_SNP [dm3] X_13617644_SNP [dm6]	T	C	7.520e^-5	0.985	INTRON Tango2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16639496	X_16639496_SNP [dm3] X_16745463_SNP [dm6]	T	A	7.546e^-5	0.985	INTRON CG9634
3L	9791120	3L_9791120_SNP [dm3] 3L_9798020_SNP [dm6]	A	G	7.598e^-5	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
2L	3552751	2L_3552751_SNP [dm3] 2L_3552751_SNP [dm6]	C	T	7.624e^-5	0.985	INTERGENIC
2R	13389283	2R_13389283_SNP [dm3] 2R_17501778_SNP [dm6]	A	C	7.643e^-5	0.985	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6120323	2L_6120323_SNP [dm3] 2L_6120323_SNP [dm6]	C	A	7.790e^-5	0.985	SYNONYMOUS_CODING CG31642 UPSTREAM stai INTRON stai
3L	3002762	3L_3002762_SNP [dm3] 3L_3002762_SNP [dm6]	T	A	7.849e^-5	0.985	UPSTREAM FMRFaR INTRON FMRFaR
3L	13116725	3L_13116725_SNP [dm3] 3L_13123625_SNP [dm6]	C	A	8.201e^-5	0.985	INTERGENIC
2L	20848397	2L_20848397_INS [dm3] 2L_20848397_INS [dm6]	T	TGTT	8.206e^-5	0.985	UPSTREAM CR44307 & 1 other INTRON CG31676
2L	8889194	2L_8889194_SNP [dm3] 2L_8889194_SNP [dm6]	G	T	8.289e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	8889196	2L_8889196_SNP [dm3] 2L_8889196_SNP [dm6]	G	A	8.289e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	18637101	X_18637101_SNP [dm3] X_18743068_SNP [dm6]	G	A	8.310e^-5	0.985	INTERGENIC
X	7257526	X_7257526_SNP [dm3] X_7363493_SNP [dm6]	G	A	8.343e^-5	0.985	INTRON CG1677 & 1 other
X	22330264	X_22330264_SNP [dm3] X_22928428_SNP [dm6]	G	T	8.391e^-5	0.985	INTERGENIC
2R	6682902	2R_6682902_SNP [dm3] 2R_10795397_SNP [dm6]	T	A	8.462e^-5	0.985	INTRON CG33144	transposable element FlyBase
2R	8637786	2R_8637786_SNP [dm3] 2R_12750281_SNP [dm6]	G	T	8.486e^-5	0.985	SPLICE_SITE_REGION CG42663 INTRON CG42663	TF binding site mE1_TFBS_cad
2R	19202894	2R_19202894_DEL [dm3] 2R_23315371_DEL [dm6]	CC	C	8.661e^-5	0.985	INTERGENIC
2R	9824974	2R_9824974_DEL [dm3] 2R_13937469_DEL [dm6]	CACCC	C	8.783e^-5	0.985	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	17165730	3L_17165730_SNP [dm3] 3L_17172630_SNP [dm6]	A	T	8.790e^-5	0.985	INTRON Rbp6
3L	1832484	3L_1832484_SNP [dm3] 3L_1832484_SNP [dm6]	T	A	8.827e^-5	0.985	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
X	15468363	X_15468363_SNP [dm3] X_15574330_SNP [dm6]	A	C	8.908e^-5	0.985	NON_SYNONYMOUS_CODING CG9213 DOWNSTREAM CG42299	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11199335	2L_11199335_INS [dm3] 2L_11199335_INS [dm6]	A	AG	9.037e^-5	0.985	INTRON Ca-beta
X	2551073	X_2551073_SNP [dm3] X_2657040_SNP [dm6]	A	G	9.098e^-5	0.985	INTRON sgg
X	7257536	X_7257536_SNP [dm3] X_7363503_SNP [dm6]	G	T	9.099e^-5	0.985	INTRON CG1677 & 1 other
2L	15261971	2L_15261971_SNP [dm3] 2L_15261971_SNP [dm6]	T	C	9.107e^-5	0.985	NON_SYNONYMOUS_CODING yuri
2L	10925166	2L_10925166_SNP [dm3] 2L_10925166_SNP [dm6]	G	A	9.136e^-5	0.985	INTRON dpr2
3R	23451646	3R_23451646_SNP [dm3] 3R_27625924_SNP [dm6]	C	T	9.202e^-5	0.985	UTR_5_PRIME CG5612 INTRON Tusp
X	12187830	X_12187830_SNP [dm3] X_12293797_SNP [dm6]	A	T	9.421e^-5	0.985	INTRON Ten-a
X	19980941	X_19980941_SNP [dm3] X_20086908_SNP [dm6]	A	T	9.580e^-5	0.985	INTERGENIC
2R	13434810	2R_13434810_SNP [dm3] 2R_17547305_SNP [dm6]	A	T	9.594e^-5	0.985	UPSTREAM MESR4 DOWNSTREAM cyp33 INTRON RpL18A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3002798	3L_3002798_SNP [dm3] 3L_3002798_SNP [dm6]	A	C	9.698e^-5	0.985	UPSTREAM FMRFaR INTRON FMRFaR
2R	9189925	2R_9189925_SNP [dm3] 2R_13302420_SNP [dm6]	C	G	9.793e^-5	0.985	DOWNSTREAM CG17047 INTERGENIC
3L	17172649	3L_17172649_INS [dm3] 3L_17179549_INS [dm6]	A	AA	9.938e^-5	0.985	INTRON Rbp6
X	10433345	X_10433345_SNP [dm3] X_10539312_SNP [dm6]	C	T	9.972e^-5	0.985	INTRON spri	TF binding site mE1_TFBS_HSA
2R	7899553	2R_7899553_SNP [dm3] 2R_12012048_SNP [dm6]	C	T	9.997e^-5	0.985	INTRON otk
2L	4080932	2L_4080932_SNP [dm3] 2L_4080932_SNP [dm6]	T	A	1.002e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4081012	2L_4081012_SNP [dm3] 2L_4081012_SNP [dm6]	T	G	1.002e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15520744	X_15520744_SNP [dm3] X_15626711_SNP [dm6]	G	A	1.005e^-4	0.985	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9791124	3L_9791124_SNP [dm3] 3L_9798024_SNP [dm6]	G	A	1.009e^-4	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
3L	9281316	3L_9281316_SNP [dm3] 3L_9288216_SNP [dm6]	A	C	1.011e^-4	0.985	UTR_3_PRIME GluRIB
2L	1625348	2L_1625348_SNP [dm3] 2L_1625348_SNP [dm6]	G	T	1.015e^-4	0.985	EXON CR44603	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20751243	X_20751243_SNP [dm3] X_20880216_SNP [dm6]	G	C	1.024e^-4	0.985	INTRON shakB	transposable element FlyBase
2R	13434768	2R_13434768_DEL [dm3] 2R_17547263_DEL [dm6]	CGAC	C	1.036e^-4	0.985	UPSTREAM MESR4 DOWNSTREAM cyp33 INTRON RpL18A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	4062539	2L_4062539_SNP [dm3] 2L_4062539_SNP [dm6]	A	T	1.040e^-4	0.985	INTRON ed
2L	2424874	2L_2424874_SNP [dm3] 2L_2424874_SNP [dm6]	C	T	1.043e^-4	0.985	NON_SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
2L	21806688	2L_21806688_SNP [dm3] 2L_21806688_SNP [dm6]	G	A	1.044e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7945433	2L_7945433_SNP [dm3] 2L_7945433_SNP [dm6]	G	C	1.059e^-4	0.985	INTRON Snoo
2R	13431835	2R_13431835_SNP [dm3] 2R_17544330_SNP [dm6]	T	G	1.060e^-4	0.985	UTR_5_PRIME CG34194 UTR_3_PRIME CG43370 UPSTREAM CG34194 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	17254803	2L_17254803_SNP [dm3] 2L_17254803_SNP [dm6]	A	C	1.065e^-4	0.985	INTRON beat-IIIc
2L	14758625	2L_14758625_SNP [dm3] 2L_14758625_SNP [dm6]	A	T	1.076e^-4	0.985	INTERGENIC
2R	8549392	2R_8549392_INS [dm3] 2R_12661887_INS [dm6]	C	CC	1.076e^-4	0.985	UPSTREAM nemy INTRON nemy
2L	21942023	2L_21942023_SNP [dm3] 2L_21942023_SNP [dm6]	G	A	1.091e^-4	0.985	INTERGENIC
3L	8838371	3L_8838371_SNP [dm3] 3L_8845271_SNP [dm6]	G	A	1.095e^-4	0.985	INTRON dally
2R	19229478	2R_19229478_SNP [dm3] 2R_23341955_SNP [dm6]	C	T	1.100e^-4	0.985	INTERGENIC
2R	9187375	2R_9187375_SNP [dm3] 2R_13299870_SNP [dm6]	C	T	1.107e^-4	0.985	SYNONYMOUS_CODING CG17047
2L	14758667	2L_14758667_SNP [dm3] 2L_14758667_SNP [dm6]	A	T	1.118e^-4	0.985	INTERGENIC
3L	13577447	3L_13577447_SNP [dm3] 3L_13584347_SNP [dm6]	G	A	1.127e^-4	0.985	INTRON bru-3
X	10433379	X_10433379_SNP [dm3] X_10539346_SNP [dm6]	T	G	1.131e^-4	0.985	INTRON spri	TF binding site mE1_TFBS_HSA
3L	3344582	3L_3344582_SNP [dm3] 3L_3344582_SNP [dm6]	T	C	1.133e^-4	0.985	INTRON kst
X	8714463	X_8714463_SNP [dm3] X_8820430_SNP [dm6]	C	T	1.146e^-4	0.985	INTERGENIC
2L	4081034	2L_4081034_SNP [dm3] 2L_4081034_SNP [dm6]	C	T	1.150e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2620334	3R_2620334_SNP [dm3] 3R_6794612_SNP [dm6]	A	G	1.152e^-4	0.985	INTRON Dfd
3L	20862619	3L_20862619_SNP [dm3] 3L_20869519_SNP [dm6]	A	G	1.165e^-4	0.985	INTRON CG32432
X	20406603	X_20406603_DEL [dm3] X_20535576_DEL [dm6]	CC	C	1.166e^-4	0.985	INTERGENIC
2R	13432668	2R_13432668_SNP [dm3] 2R_17545163_SNP [dm6]	G	A	1.177e^-4	0.985	UPSTREAM cyp33 DOWNSTREAM CG43370 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	7515918	2L_7515918_SNP [dm3] 2L_7515918_SNP [dm6]	A	G	1.179e^-4	0.985	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3L	10898159	3L_10898159_SNP [dm3] 3L_10905059_SNP [dm6]	T	G	1.198e^-4	0.985	INTERGENIC
2R	7922069	2R_7922069_SNP [dm3] 2R_12034564_SNP [dm6]	T	C	1.201e^-4	0.985	DOWNSTREAM pds5 INTRON CG8321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	15902110	2L_15902110_SNP [dm3] 2L_15902110_SNP [dm6]	G	C	1.206e^-4	0.985	NON_SYNONYMOUS_CODING CG31821
3R	5847785	3R_5847785_SNP [dm3] 3R_10022063_SNP [dm6]	A	G	1.224e^-4	0.985	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
3L	15324421	3L_15324421_SNP [dm3] 3L_15331321_SNP [dm6]	A	T	1.225e^-4	0.985	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19313220	2R_19313220_SNP [dm3] 2R_23425697_SNP [dm6]	G	A	1.229e^-4	0.985	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15986051	2R_15986051_SNP [dm3] 2R_20098546_SNP [dm6]	A	C	1.234e^-4	0.985	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	13116728	3L_13116728_SNP [dm3] 3L_13123628_SNP [dm6]	T	C	1.236e^-4	0.985	INTERGENIC
X	16673291	X_16673291_SNP [dm3] X_16779258_SNP [dm6]	A	G	1.249e^-4	0.985	INTRON if
2R	8782477	2R_8782477_SNP [dm3] 2R_12894972_SNP [dm6]	A	G	1.256e^-4	0.985	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	8782479	2R_8782479_SNP [dm3] 2R_12894974_SNP [dm6]	G	A	1.256e^-4	0.985	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	3191822	2R_3191822_SNP [dm3] 2R_7304317_SNP [dm6]	C	A	1.256e^-4	0.985	INTERGENIC
3L	16806583	3L_16806583_SNP [dm3] 3L_16813483_SNP [dm6]	C	A	1.260e^-4	0.985	INTRON nudC & 1 other
3L	3344272	3L_3344272_SNP [dm3] 3L_3344272_SNP [dm6]	A	C	1.265e^-4	0.985	INTRON kst
2R	10633278	2R_10633278_SNP [dm3] 2R_14745773_SNP [dm6]	C	T	1.266e^-4	0.985	UPSTREAM Dro & 1 other INTERGENIC
2R	10633328	2R_10633328_SNP [dm3] 2R_14745823_SNP [dm6]	A	G	1.266e^-4	0.985	UPSTREAM Dro & 1 other INTERGENIC
2R	10633347	2R_10633347_SNP [dm3] 2R_14745842_SNP [dm6]	G	A	1.266e^-4	0.985	UPSTREAM Dro & 1 other INTERGENIC
X	7257463	X_7257463_SNP [dm3] X_7363430_SNP [dm6]	C	T	1.269e^-4	0.985	INTRON CG1677 & 1 other
2L	4079576	2L_4079576_SNP [dm3] 2L_4079576_SNP [dm6]	A	G	1.271e^-4	0.985	SYNONYMOUS_CODING ed
3L	5859233	3L_5859233_SNP [dm3] 3L_5866133_SNP [dm6]	G	T	1.275e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13437362	2R_13437362_SNP [dm3] 2R_17549857_SNP [dm6]	T	C	1.290e^-4	0.985	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	15299666	3L_15299666_SNP [dm3] 3L_15306566_SNP [dm6]	C	T	1.299e^-4	0.985	SYNONYMOUS_CODING CG7255
3L	10048156	3L_10048156_SNP [dm3] 3L_10055056_SNP [dm6]	A	C	1.313e^-4	0.985	INTRON dpr6
X	6952821	X_6952821_SNP [dm3] X_7058788_SNP [dm6]	G	T	1.314e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12865264	2L_12865264_DEL [dm3] 2L_12865264_DEL [dm6]	GG	G	1.319e^-4	0.985	INTERGENIC
X	16566292	X_16566292_SNP [dm3] X_16672259_SNP [dm6]	C	A	1.324e^-4	0.985	INTRON CG13012
3L	1493087	3L_1493087_SNP [dm3] 3L_1493087_SNP [dm6]	T	G	1.324e^-4	0.985	SPLICE_SITE_REGION CG12084 INTRON CG12084	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	13433067	2R_13433067_SNP [dm3] 2R_17545562_SNP [dm6]	C	G	1.336e^-4	0.985	SYNONYMOUS_CODING cyp33 DOWNSTREAM CG34194 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	13433274	2R_13433274_SNP [dm3] 2R_17545769_SNP [dm6]	A	C	1.336e^-4	0.985	SYNONYMOUS_CODING cyp33 DOWNSTREAM CG34194 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	13436703	2R_13436703_SNP [dm3] 2R_17549198_SNP [dm6]	G	A	1.336e^-4	0.985	NON_SYNONYMOUS_CODING MESR4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6385232	3L_6385232_SNP [dm3] 3L_6392132_SNP [dm6]	G	A	1.342e^-4	0.985	INTERGENIC
3R	18507752	3R_18507752_SNP [dm3] 3R_22682030_SNP [dm6]	C	G	1.349e^-4	0.985	UTR_3_PRIME CG45058
X	15876814	X_15876814_SNP [dm3] X_15982781_SNP [dm6]	T	C	1.369e^-4	0.985	UTR_5_PRIME CG9170 UPSTREAM CG8931	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9938008	2L_9938008_SNP [dm3] 2L_9938008_SNP [dm6]	T	C	1.377e^-4	0.985	UTR_5_PRIME CG31712 UPSTREAM CG4619 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14081570	2L_14081570_SNP [dm3] 2L_14081570_SNP [dm6]	G	T	1.384e^-4	0.985	INTRON nAChRalpha5
3L	12584121	3L_12584121_SNP [dm3] 3L_12591021_SNP [dm6]	C	G	1.385e^-4	0.985	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13578188	3L_13578188_SNP [dm3] 3L_13585088_SNP [dm6]	G	A	1.385e^-4	0.985	INTRON bru-3
2R	19200581	2R_19200581_SNP [dm3] 2R_23313058_SNP [dm6]	C	T	1.388e^-4	0.985	NON_SYNONYMOUS_CODING HP1Lcsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19034459	2R_19034459_SNP [dm3] 2R_23146936_SNP [dm6]	G	T	1.389e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10526485	2L_10526485_SNP [dm3] 2L_10526485_SNP [dm6]	T	A	1.395e^-4	0.985	INTERGENIC
3R	15373324	3R_15373324_DEL [dm3] 3R_19547602_DEL [dm6]	GCG	G	1.396e^-4	0.985	INTRON Dys
3R	26642497	3R_26642497_DEL [dm3] 3R_30816775_DEL [dm6]	TA	T	1.399e^-4	0.985	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_cad
2R	624636	2R_624636_SNP [dm3] 2R_4737131_SNP [dm6]	G	A	1.406e^-4	0.985	INTERGENIC
2L	12858565	2L_12858565_SNP [dm3] 2L_12858565_SNP [dm6]	A	T	1.411e^-4	0.985	INTERGENIC
2L	17611844	2L_17611844_SNP [dm3] 2L_17611844_SNP [dm6]	G	A	1.433e^-4	0.985	INTERGENIC
2L	10685112	2L_10685112_SNP [dm3] 2L_10685112_SNP [dm6]	C	A	1.452e^-4	0.985	UPSTREAM CG7299 INTERGENIC
2L	14001933	2L_14001933_SNP [dm3] 2L_14001933_SNP [dm6]	C	A	1.463e^-4	0.985	UPSTREAM rk INTERGENIC
2R	10630736	2R_10630736_SNP [dm3] 2R_14743231_SNP [dm6]	G	C	1.473e^-4	0.985	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14561447	2L_14561447_SNP [dm3] 2L_14561447_SNP [dm6]	A	G	1.476e^-4	0.985	DOWNSTREAM CR44855 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10925464	2L_10925464_SNP [dm3] 2L_10925464_SNP [dm6]	T	G	1.488e^-4	0.985	SYNONYMOUS_CODING dpr2
3L	18118681	3L_18118681_SNP [dm3] 3L_18125581_SNP [dm6]	G	T	1.492e^-4	0.985	INTERGENIC
3L	12585340	3L_12585340_INS [dm3] 3L_12592240_INS [dm6]	T	TAGCCTTT	1.510e^-4	0.985	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16402245	2R_16402245_DEL [dm3] 2R_20514740_DEL [dm6]	TT	T	1.513e^-4	0.985	INTERGENIC
2L	5715716	2L_5715716_SNP [dm3] 2L_5715716_SNP [dm6]	C	A	1.514e^-4	0.985	NON_SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
X	12005700	X_12005700_SNP [dm3] X_12111667_SNP [dm6]	C	T	1.520e^-4	0.985	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
2R	13442985	2R_13442985_SNP [dm3] 2R_17555480_SNP [dm6]	T	C	1.534e^-4	0.985	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
2L	790076	2L_790076_SNP [dm3] 2L_790076_SNP [dm6]	A	G	1.537e^-4	0.985	INTRON Pkg21D	TF binding site mE1_TFBS_cad
X	20959788	X_20959788_DEL [dm3] X_21088761_DEL [dm6]	GTGTTTGTGAAAG...	G	1.540e^-4	0.985	INTERGENIC
3R	20797194	3R_20797194_SNP [dm3] 3R_24971472_SNP [dm6]	T	C	1.545e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18505389	2L_18505389_SNP [dm3] 2L_18505389_SNP [dm6]	C	T	1.548e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6825436	3L_6825436_DEL [dm3] 3L_6832336_DEL [dm6]	AGTGGAAGGGCCA...	T	1.556e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7922343	2R_7922343_SNP [dm3] 2R_12034838_SNP [dm6]	A	G	1.566e^-4	0.985	INTRON CG8321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10636453	3L_10636453_DEL [dm3] 3L_10643353_DEL [dm6]	CT	C	1.568e^-4	0.985	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
2R	17564764	2R_17564764_SNP [dm3] 2R_21677259_SNP [dm6]	A	G	1.575e^-4	0.985	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9161894	2R_9161894_SNP [dm3] 2R_13274389_SNP [dm6]	G	A	1.576e^-4	0.985	INTRON Dh31-R
2R	8869879	2R_8869879_SNP [dm3] 2R_12982374_SNP [dm6]	A	C	1.583e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19195237	2L_19195237_SNP [dm3] 2L_19195237_SNP [dm6]	A	G	1.595e^-4	0.985	INTRON drl	regulatory region REDfly_CRMs
X	16598280	X_16598280_SNP [dm3] X_16704247_SNP [dm6]	T	C	1.595e^-4	0.985	SYNONYMOUS_CODING CG4653 UPSTREAM CG9673 INTRON CG4678	TF binding site mE1_TFBS_chinmo
2L	10078454	2L_10078454_DEL [dm3] 2L_10078454_DEL [dm6]	AC	A	1.619e^-4	0.985	INTRON CG44153
3L	6997112	3L_6997112_DEL [dm3] 3L_7004012_DEL [dm6]	AT	A	1.619e^-4	0.985	INTRON Mp
2L	19971089	2L_19971089_SNP [dm3] 2L_19971089_SNP [dm6]	G	A	1.631e^-4	0.985	SYNONYMOUS_CODING CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10942243	3L_10942243_SNP [dm3] 3L_10949143_SNP [dm6]	T	G	1.635e^-4	0.985	INTERGENIC
3L	10505060	3L_10505060_SNP [dm3] 3L_10511960_SNP [dm6]	C	A	1.635e^-4	0.985	INTRON A2bp1
3L	15734870	3L_15734870_SNP [dm3] 3L_15741770_SNP [dm6]	G	A	1.640e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	3550280	2L_3550280_SNP [dm3] 2L_3550280_SNP [dm6]	T	A	1.649e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14081588	2L_14081588_SNP [dm3] 2L_14081588_SNP [dm6]	T	C	1.660e^-4	0.985	INTRON nAChRalpha5
3L	10234282	3L_10234282_SNP [dm3] 3L_10241182_SNP [dm6]	C	A	1.661e^-4	0.985	DOWNSTREAM CR45403 INTERGENIC
2L	12547628	2L_12547628_SNP [dm3] 2L_12547628_SNP [dm6]	C	T	1.661e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12141616	3L_12141616_SNP [dm3] 3L_12148516_SNP [dm6]	A	T	1.667e^-4	0.985	UPSTREAM eap INTRON Nrx-IV
2R	611745	2R_611745_SNP [dm3] 2R_4724240_SNP [dm6]	T	A	1.669e^-4	0.985	INTRON Nipped-B	transposable element FlyBase
2L	8889148	2L_8889148_SNP [dm3] 2L_8889148_SNP [dm6]	C	T	1.671e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	6059513	3L_6059513_SNP [dm3] 3L_6066413_SNP [dm6]	T	A	1.678e^-4	0.985	UTR_5_PRIME CG42269	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14520626	X_14520626_SNP [dm3] X_14626593_SNP [dm6]	A	C	1.680e^-4	0.985	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5784331	3R_5784331_SNP [dm3] 3R_9958609_SNP [dm6]	A	C	1.687e^-4	0.985	INTRON Glut4EF
3L	10856824	3L_10856824_SNP [dm3] 3L_10863724_SNP [dm6]	A	G	1.693e^-4	0.985	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17565396	2R_17565396_SNP [dm3] 2R_21677891_SNP [dm6]	A	T	1.697e^-4	0.985	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19202931	2R_19202931_SNP [dm3] 2R_23315408_SNP [dm6]	A	G	1.699e^-4	0.985	INTERGENIC
2R	6060385	2R_6060385_SNP [dm3] 2R_10172880_SNP [dm6]	T	C	1.703e^-4	0.985	INTRON KCNQ
2R	5424255	2R_5424255_SNP [dm3] 2R_9536750_SNP [dm6]	C	A	1.713e^-4	0.985	INTRON brp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19057134	3L_19057134_INS [dm3] 3L_19064034_INS [dm6]	A	ATTT	1.717e^-4	0.985	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19968308	2R_19968308_DEL [dm3] 2R_24080785_DEL [dm6]	TGCAAGAAATCGGATT...	T	1.719e^-4	0.985	UPSTREAM CG13564 & 2 others INTERGENIC
3L	19068001	3L_19068001_SNP [dm3] 3L_19074901_SNP [dm6]	A	G	1.725e^-4	0.985	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl
3L	10895054	3L_10895054_SNP [dm3] 3L_10901954_SNP [dm6]	A	T	1.734e^-4	0.985	INTERGENIC
2R	10449439	2R_10449439_SNP [dm3] 2R_14561934_SNP [dm6]	G	T	1.740e^-4	0.985	INTRON ttv
3L	8866315	3L_8866315_SNP [dm3] 3L_8873215_SNP [dm6]	C	T	1.753e^-4	0.985	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3416147	X_3416147_SNP [dm3] X_3522114_SNP [dm6]	A	G	1.757e^-4	0.985	INTRON CR44999 & 1 other
3R	14961562	3R_14961562_SNP [dm3] 3R_19135840_SNP [dm6]	T	C	1.760e^-4	0.985	SYNONYMOUS_CODING Cyp12a4
2R	8502042	2R_8502042_SNP [dm3] 2R_12614537_SNP [dm6]	T	G	1.766e^-4	0.985	INTRON Galphaq & 1 other
3L	4656471	3L_4656471_SNP [dm3] 3L_4656471_SNP [dm6]	A	G	1.769e^-4	0.985	INTRON axo
2R	838033	2R_838033_SNP [dm3] 2R_4950528_SNP [dm6]	C	A	1.775e^-4	0.985	INTRON Ir41a
2L	14758606	2L_14758606_SNP [dm3] 2L_14758606_SNP [dm6]	C	T	1.782e^-4	0.985	INTERGENIC
3R	16873543	3R_16873543_SNP [dm3] 3R_21047821_SNP [dm6]	C	T	1.788e^-4	0.985	UTR_3_PRIME CG7079 UPSTREAM CG31207
2L	13070942	2L_13070942_SNP [dm3] 2L_13070942_SNP [dm6]	T	C	1.790e^-4	0.985	INTERGENIC
3L	15918327	3L_15918327_SNP [dm3] 3L_15925227_SNP [dm6]	A	G	1.802e^-4	0.985	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11159430	3L_11159430_SNP [dm3] 3L_11166330_SNP [dm6]	A	C	1.809e^-4	0.985	SYNONYMOUS_CODING Alg10 DOWNSTREAM wls	TF binding site mE1_TFBS_chinmo
2L	1675984	2L_1675984_SNP [dm3] 2L_1675984_SNP [dm6]	T	C	1.809e^-4	0.985	INTRON chinmo
X	7548337	X_7548337_SNP [dm3] X_7654304_SNP [dm6]	A	G	1.813e^-4	0.985	INTRON ct
3L	19956156	3L_19956156_SNP [dm3] 3L_19963056_SNP [dm6]	A	G	1.813e^-4	0.985	INTRON Ac76E
3L	6382183	3L_6382183_SNP [dm3] 3L_6389083_SNP [dm6]	A	T	1.817e^-4	0.985	INTERGENIC
3L	4368819	3L_4368819_DEL [dm3] 3L_4368819_DEL [dm6]	TT	T	1.824e^-4	0.985	UTR_3_PRIME DopEcR DOWNSTREAM DopEcR
2L	18546037	2L_18546037_SNP [dm3] 2L_18546037_SNP [dm6]	G	A	1.844e^-4	0.985	INTRON Pde11
2L	1281713	2L_1281713_SNP [dm3] 2L_1281713_SNP [dm6]	A	T	1.850e^-4	0.985	INTRON robo3
X	7257443	X_7257443_SNP [dm3] X_7363410_SNP [dm6]	A	G	1.854e^-4	0.985	INTRON CG1677 & 1 other
3R	24373052	3R_24373052_INS [dm3] 3R_28547330_INS [dm6]	G	GGG	1.860e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15372449	3R_15372449_SNP [dm3] 3R_19546727_SNP [dm6]	G	A	1.894e^-4	0.985	INTRON Dys
X	18947417	X_18947417_SNP [dm3] X_19053384_SNP [dm6]	C	T	1.898e^-4	0.985	DOWNSTREAM Diedel3 INTERGENIC
3L	9791116	3L_9791116_SNP [dm3] 3L_9798016_SNP [dm6]	A	T	1.904e^-4	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
2L	9946596	2L_9946596_DEL [dm3] 2L_9946596_DEL [dm6]	AGAGCGCGAA	A	1.910e^-4	0.985	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9189666	2R_9189666_SNP [dm3] 2R_13302161_SNP [dm6]	C	G	1.950e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
2L	21950870	2L_21950870_SNP [dm3] 2L_21950870_SNP [dm6]	G	C	1.966e^-4	0.985	UPSTREAM CR45703 & 1 other INTERGENIC
2R	5167594	2R_5167594_SNP [dm3] 2R_9280089_SNP [dm6]	C	T	1.972e^-4	0.985	INTRON Pkn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	3447120	X_3447120_SNP [dm3] X_3553087_SNP [dm6]	G	C	1.975e^-4	0.985	INTRON CG32791
2R	13438229	2R_13438229_SNP [dm3] 2R_17550724_SNP [dm6]	G	T	1.980e^-4	0.985	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
X	6545885	X_6545885_SNP [dm3] X_6651852_SNP [dm6]	C	T	1.980e^-4	0.985	UTR_3_PRIME pigs
2R	5185704	2R_5185704_SNP [dm3] 2R_9298199_SNP [dm6]	C	T	1.982e^-4	0.985	INTRON Drep-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8268124	3L_8268124_INS [dm3] 3L_8275024_INS [dm6]	A	AACA	1.988e^-4	0.985	INTRON Dscam4
3R	15605893	3R_15605893_SNP [dm3] 3R_19780171_SNP [dm6]	G	A	1.990e^-4	0.985	NON_SYNONYMOUS_CODING CG11391
3L	12585253	3L_12585253_SNP [dm3] 3L_12592153_SNP [dm6]	G	T	1.991e^-4	0.985	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	740373	X_740373_SNP [dm3] X_846340_SNP [dm6]	T	A	1.992e^-4	0.985	UTR_3_PRIME CG3713 DOWNSTREAM CG3713 INTRON CG43867
3R	20560335	3R_20560335_SNP [dm3] 3R_24734613_SNP [dm6]	T	G	2.012e^-4	0.985	INTRON tok
2R	6647115	2R_6647115_SNP [dm3] 2R_10759610_SNP [dm6]	T	A	2.013e^-4	0.985	INTRON CG33144
2L	6117549	2L_6117549_SNP [dm3] 2L_6117549_SNP [dm6]	A	T	2.026e^-4	0.985	UPSTREAM CG31642 INTRON stai
2R	19200136	2R_19200136_INS [dm3] 2R_23312613_INS [dm6]	T	CAA	2.033e^-4	0.985	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_cad
2R	3191873	2R_3191873_SNP [dm3] 2R_7304368_SNP [dm6]	C	T	2.033e^-4	0.985	INTERGENIC
X	16639053	X_16639053_SNP [dm3] X_16745020_SNP [dm6]	A	C	2.036e^-4	0.985	NON_SYNONYMOUS_CODING CG9634 DOWNSTREAM Twdlalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12585519	3L_12585519_SNP [dm3] 3L_12592419_SNP [dm6]	A	G	2.044e^-4	0.985	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10874275	3R_10874275_DEL [dm3] 3R_15048553_DEL [dm6]	CCC	C	2.044e^-4	0.985	INTERGENIC
2L	17251583	2L_17251583_SNP [dm3] 2L_17251583_SNP [dm6]	A	T	2.056e^-4	0.985	UTR_5_PRIME beat-IIIc
2R	3116373	2R_3116373_SNP [dm3] 2R_7228868_SNP [dm6]	T	G	2.058e^-4	0.985	INTERGENIC
2R	611771	2R_611771_SNP [dm3] 2R_4724266_SNP [dm6]	T	A	2.061e^-4	0.985	INTRON Nipped-B	transposable element FlyBase
3R	18507751	3R_18507751_SNP [dm3] 3R_22682029_SNP [dm6]	A	T	2.071e^-4	0.985	UTR_3_PRIME CG45058
3R	371607	3R_371607_SNP [dm3] 3R_4545885_SNP [dm6]	A	G	2.071e^-4	0.985	INTRON CG34357	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16927080	X_16927080_DEL [dm3] X_17033047_DEL [dm6]	TTGAGTT	T	2.076e^-4	0.985	UPSTREAM CG45002 INTRON CG45002
X	17034234	X_17034234_SNP [dm3] X_17140201_SNP [dm6]	G	A	2.086e^-4	0.985	SYNONYMOUS_CODING mei-218 UTR_3_PRIME mei-217
2L	503357	2L_503357_SNP [dm3] 2L_503357_SNP [dm6]	A	G	2.093e^-4	0.985	INTRON ush
3L	11202777	3L_11202777_SNP [dm3] 3L_11209677_SNP [dm6]	G	A	2.099e^-4	0.985	SYNONYMOUS_CODING Ube3a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	10482204	2R_10482204_SNP [dm3] 2R_14594699_SNP [dm6]	T	C	2.100e^-4	0.985	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7909352	X_7909352_SNP [dm3] X_8015319_SNP [dm6]	G	A	2.112e^-4	0.985	INTRON Tbh
3L	20565474	3L_20565474_SNP [dm3] 3L_20572374_SNP [dm6]	A	T	2.114e^-4	0.985	INTERGENIC
3L	20565475	3L_20565475_SNP [dm3] 3L_20572375_SNP [dm6]	A	T	2.114e^-4	0.985	INTERGENIC
2R	17095156	2R_17095156_SNP [dm3] 2R_21207651_SNP [dm6]	A	G	2.130e^-4	0.985	INTRON CG44245 & 1 other
X	7885228	X_7885228_SNP [dm3] X_7991195_SNP [dm6]	A	G	2.131e^-4	0.985	INTERGENIC
X	16639276	X_16639276_SNP [dm3] X_16745243_SNP [dm6]	T	A	2.134e^-4	0.985	DOWNSTREAM Twdlalpha INTRON CG9634	TF binding site mE1_TFBS_HSA
3R	17733589	3R_17733589_SNP [dm3] 3R_21907867_SNP [dm6]	T	G	2.141e^-4	0.985	DOWNSTREAM CG6678 INTERGENIC
3L	3216737	3L_3216737_SNP [dm3] 3L_3216737_SNP [dm6]	A	C	2.144e^-4	0.985	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_sens
3R	10133576	3R_10133576_SNP [dm3] 3R_14307854_SNP [dm6]	G	A	2.150e^-4	0.985	SYNONYMOUS_CODING su_Hw_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_sens
2L	4079540	2L_4079540_SNP [dm3] 2L_4079540_SNP [dm6]	G	C	2.152e^-4	0.985	SYNONYMOUS_CODING ed
3L	15974212	3L_15974212_SNP [dm3] 3L_15981112_SNP [dm6]	G	T	2.158e^-4	0.985	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
X	15521002	X_15521002_INS [dm3] X_15626969_INS [dm6]	A	AGAA	2.163e^-4	0.985	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9190654	2R_9190654_SNP [dm3] 2R_13303149_SNP [dm6]	G	C	2.171e^-4	0.985	INTERGENIC
3R	12454083	3R_12454083_SNP [dm3] 3R_16628361_SNP [dm6]	T	C	2.184e^-4	0.985	INTRON Fas1
3L	11388330	3L_11388330_SNP [dm3] 3L_11395230_SNP [dm6]	G	A	2.185e^-4	0.985	NON_SYNONYMOUS_CODING CG11726
2L	17525073	2L_17525073_SNP [dm3] 2L_17525073_SNP [dm6]	C	T	2.191e^-4	0.985	SYNONYMOUS_CODING Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
2R	18406572	2R_18406572_SNP [dm3] 2R_22519067_SNP [dm6]	A	G	2.208e^-4	0.985	INTRON px
2L	4058278	2L_4058278_SNP [dm3] 2L_4058278_SNP [dm6]	C	G	2.214e^-4	0.985	INTRON ed
2L	8889256	2L_8889256_SNP [dm3] 2L_8889256_SNP [dm6]	A	G	2.229e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2R	15708412	2R_15708412_INS [dm3] 2R_19820907_INS [dm6]	T	TAT	2.231e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2L	17424355	2L_17424355_SNP [dm3] 2L_17424355_SNP [dm6]	A	G	2.245e^-4	0.985	INTRON Dif
2L	17424360	2L_17424360_SNP [dm3] 2L_17424360_SNP [dm6]	T	C	2.245e^-4	0.985	INTRON Dif
2L	17359250	2L_17359250_SNP [dm3] 2L_17359250_SNP [dm6]	A	T	2.246e^-4	0.985	INTERGENIC
3L	5854901	3L_5854901_SNP [dm3] 3L_5861801_SNP [dm6]	C	A	2.254e^-4	0.985	INTERGENIC
X	17125467	X_17125467_INS [dm3] X_17231434_INS [dm6]	T	TTGCT	2.258e^-4	0.985	UPSTREAM CG10597 INTERGENIC
3L	4023738	3L_4023738_SNP [dm3] 3L_4023738_SNP [dm6]	G	A	2.261e^-4	0.985	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1	TF binding site mE1_TFBS_chinmo
3L	273630	3L_273630_SNP [dm3] 3L_273630_SNP [dm6]	G	T	2.262e^-4	0.985	SYNONYMOUS_CODING miple2 UPSTREAM CG32845
3R	25344556	3R_25344556_SNP [dm3] 3R_29518834_SNP [dm6]	G	C	2.287e^-4	0.985	INTERGENIC
3R	19197850	3R_19197850_SNP [dm3] 3R_23372128_SNP [dm6]	T	G	2.295e^-4	0.985	UPSTREAM CG42827 EXON CR44322
3L	4656344	3L_4656344_SNP [dm3] 3L_4656344_SNP [dm6]	A	G	2.301e^-4	0.985	SYNONYMOUS_CODING axo
2R	9188529	2R_9188529_SNP [dm3] 2R_13301024_SNP [dm6]	T	G	2.305e^-4	0.985	INTRON CG17047
3L	1449716	3L_1449716_SNP [dm3] 3L_1449716_SNP [dm6]	T	C	2.306e^-4	0.985	INTRON Ptp61F	TF binding site mE1_TFBS_cnc
3L	12160236	3L_12160236_SNP [dm3] 3L_12167136_SNP [dm6]	T	A	2.315e^-4	0.985	INTRON Rh7
2L	8783974	2L_8783974_SNP [dm3] 2L_8783974_SNP [dm6]	G	A	2.331e^-4	0.985	INTERGENIC
2L	17606113	2L_17606113_SNP [dm3] 2L_17606113_SNP [dm6]	T	C	2.342e^-4	0.985	DOWNSTREAM CR44412 INTERGENIC
2L	9383049	2L_9383049_SNP [dm3] 2L_9383049_SNP [dm6]	T	C	2.344e^-4	0.985	INTRON Shawl
3R	19925289	3R_19925289_SNP [dm3] 3R_24099567_SNP [dm6]	G	A	2.349e^-4	0.985	INTRON 4EHP
3L	1839411	3L_1839411_SNP [dm3] 3L_1839411_SNP [dm6]	A	C	2.351e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
3L	1839412	3L_1839412_SNP [dm3] 3L_1839412_SNP [dm6]	T	C	2.351e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
X	21101161	X_21101161_SNP [dm3] X_21230134_SNP [dm6]	A	T	2.352e^-4	0.985	INTRON CG32521
3L	20565303	3L_20565303_SNP [dm3] 3L_20572203_SNP [dm6]	A	G	2.361e^-4	0.985	INTERGENIC
3R	18732208	3R_18732208_SNP [dm3] 3R_22906486_SNP [dm6]	C	T	2.364e^-4	0.985	INTRON klg
2L	4926648	2L_4926648_INS [dm3] 2L_4926648_INS [dm6]	T	TT	2.369e^-4	0.985	INTRON hoe1
3L	19320571	3L_19320571_SNP [dm3] 3L_19327471_SNP [dm6]	T	C	2.386e^-4	0.985	INTRON pip
X	8352063	X_8352063_SNP [dm3] X_8458030_SNP [dm6]	A	T	2.388e^-4	0.985	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
3L	15299598	3L_15299598_SNP [dm3] 3L_15306498_SNP [dm6]	G	T	2.392e^-4	0.985	INTRON CG7255
2L	15082622	2L_15082622_SNP [dm3] 2L_15082622_SNP [dm6]	T	C	2.402e^-4	0.985	INTRON CG15270
2R	9189887	2R_9189887_SNP [dm3] 2R_13302382_SNP [dm6]	G	A	2.412e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
2R	13725396	2R_13725396_SNP [dm3] 2R_17837891_SNP [dm6]	A	G	2.419e^-4	0.985	INTRON grh	TF binding site BDTNP1_TFBS_da
2L	10806525	2L_10806525_SNP [dm3] 2L_10806525_SNP [dm6]	G	A	2.419e^-4	0.985	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3R	5795415	3R_5795415_SNP [dm3] 3R_9969693_SNP [dm6]	G	A	2.426e^-4	0.985	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	21737704	2L_21737704_SNP [dm3] 2L_21737704_SNP [dm6]	T	C	2.434e^-4	0.985	INTERGENIC
3R	2607343	3R_2607343_SNP [dm3] 3R_6781621_SNP [dm6]	G	A	2.437e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26642515	3R_26642515_SNP [dm3] 3R_30816793_SNP [dm6]	G	T	2.443e^-4	0.985	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_cad
3L	4656474	3L_4656474_SNP [dm3] 3L_4656474_SNP [dm6]	A	T	2.456e^-4	0.985	INTRON axo
X	12801535	X_12801535_SNP [dm3] X_12907502_SNP [dm6]	A	G	2.456e^-4	0.985	NON_SYNONYMOUS_CODING mRpL49 DOWNSTREAM Brms1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19219098	2R_19219098_SNP [dm3] 2R_23331575_SNP [dm6]	A	C	2.457e^-4	0.985	INTERGENIC
3L	7001342	3L_7001342_SNP [dm3] 3L_7008242_SNP [dm6]	A	G	2.463e^-4	0.985	INTRON Mp
2R	13442376	2R_13442376_SNP [dm3] 2R_17554871_SNP [dm6]	G	T	2.470e^-4	0.985	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12160222	3L_12160222_SNP [dm3] 3L_12167122_SNP [dm6]	A	C	2.486e^-4	0.985	INTRON Rh7
3L	19078141	3L_19078141_SNP [dm3] 3L_19085041_SNP [dm6]	A	G	2.487e^-4	0.985	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17251596	2L_17251596_SNP [dm3] 2L_17251596_SNP [dm6]	C	T	2.498e^-4	0.985	UTR_5_PRIME beat-IIIc
2L	5006113	2L_5006113_SNP [dm3] 2L_5006113_SNP [dm6]	G	A	2.500e^-4	0.985	INTRON Rtnl1
2R	9178923	2R_9178923_SNP [dm3] 2R_13291418_SNP [dm6]	T	G	2.506e^-4	0.985	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo
X	8084719	X_8084719_SNP [dm3] X_8190686_SNP [dm6]	A	C	2.506e^-4	0.985	INTRON sdt
X	19228775	X_19228775_SNP [dm3] X_19334742_SNP [dm6]	C	T	2.513e^-4	0.985	INTRON nAChRalpha7
3R	10843283	3R_10843283_SNP [dm3] 3R_15017561_SNP [dm6]	T	C	2.514e^-4	0.985	INTERGENIC
2R	17095146	2R_17095146_SNP [dm3] 2R_21207641_SNP [dm6]	C	A	2.518e^-4	0.985	INTRON CG44245 & 1 other
2L	3086849	2L_3086849_SNP [dm3] 2L_3086849_SNP [dm6]	G	A	2.518e^-4	0.985	UPSTREAM toc INTRON toc
3L	20875721	3L_20875721_SNP [dm3] 3L_20882621_SNP [dm6]	C	T	2.523e^-4	0.985	INTRON CG32432
3L	4353501	3L_4353501_SNP [dm3] 3L_4353501_SNP [dm6]	A	C	2.526e^-4	0.985	INTRON Cip4
2L	14568998	2L_14568998_SNP [dm3] 2L_14568998_SNP [dm6]	G	A	2.537e^-4	0.985	INTERGENIC
2L	9881274	2L_9881274_SNP [dm3] 2L_9881274_SNP [dm6]	C	G	2.541e^-4	0.985	INTRON nAChRalpha6
2R	19199905	2R_19199905_SNP [dm3] 2R_23312382_SNP [dm6]	C	T	2.545e^-4	0.985	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_cad
X	19368149	X_19368149_SNP [dm3] X_19474116_SNP [dm6]	C	T	2.550e^-4	0.985	UPSTREAM CG12200 DOWNSTREAM CG32533 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16338713	3R_16338713_SNP [dm3] 3R_20512991_SNP [dm6]	T	G	2.553e^-4	0.985	UPSTREAM CG4288 INTERGENIC
2L	1930293	2L_1930293_SNP [dm3] 2L_1930293_SNP [dm6]	G	A	2.554e^-4	0.985	INTRON CG7337
X	250505	X_250505_SNP [dm3] X_356472_SNP [dm6]	A	C	2.561e^-4	0.985	UPSTREAM y INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	16819975	2R_16819975_SNP [dm3] 2R_20932470_SNP [dm6]	A	G	2.568e^-4	0.985	INTRON Rx	TF binding site BDTNP1_TFBS_dl
2R	12031113	2R_12031113_SNP [dm3] 2R_16143608_SNP [dm6]	C	T	2.579e^-4	0.985	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8332754	2R_8332754_SNP [dm3] 2R_12445249_SNP [dm6]	A	C	2.584e^-4	0.985	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	1839421	3L_1839421_SNP [dm3] 3L_1839421_SNP [dm6]	G	A	2.590e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
2R	6894987	2R_6894987_SNP [dm3] 2R_11007482_SNP [dm6]	A	G	2.603e^-4	0.985	INTRON luna
2R	13429425	2R_13429425_SNP [dm3] 2R_17541920_SNP [dm6]	G	T	2.604e^-4	0.985	INTRON CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9188525	2R_9188525_SNP [dm3] 2R_13301020_SNP [dm6]	T	G	2.610e^-4	0.985	INTRON CG17047
2L	15851125	2L_15851125_SNP [dm3] 2L_15851125_SNP [dm6]	G	C	2.616e^-4	0.985	INTERGENIC
3L	9791112	3L_9791112_SNP [dm3] 3L_9798012_SNP [dm6]	C	T	2.629e^-4	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
3L	3114057	3L_3114057_SNP [dm3] 3L_3114057_SNP [dm6]	A	G	2.633e^-4	0.985	SYNONYMOUS_CODING CG45067 DOWNSTREAM prominin-like
2L	3200405	2L_3200405_SNP [dm3] 2L_3200405_SNP [dm6]	T	A	2.637e^-4	0.985	UPSTREAM CG34393 INTRON CG34393
3L	2734120	3L_2734120_SNP [dm3] 3L_2734120_SNP [dm6]	T	G	2.638e^-4	0.985	INTRON Mrtf
3R	16986399	3R_16986399_SNP [dm3] 3R_21160677_SNP [dm6]	A	G	2.648e^-4	0.985	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10182547	3R_10182547_SNP [dm3] 3R_14356825_SNP [dm6]	G	C	2.664e^-4	0.985	INTRON NK7.1
2R	7922550	2R_7922550_SNP [dm3] 2R_12035045_SNP [dm6]	T	A	2.672e^-4	0.985	DOWNSTREAM CG43191 INTRON CG8321	TF binding site BDTNP1_TFBS_dl
2L	14509455	2L_14509455_SNP [dm3] 2L_14509455_SNP [dm6]	A	T	2.674e^-4	0.985	DOWNSTREAM CR45693 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10053900	3R_10053900_SNP [dm3] 3R_14228178_SNP [dm6]	A	G	2.676e^-4	0.985	UTR_3_PRIME CG9624
3L	10935693	3L_10935693_SNP [dm3] 3L_10942593_SNP [dm6]	A	G	2.677e^-4	0.985	INTERGENIC
2R	16664408	2R_16664408_SNP [dm3] 2R_20776903_SNP [dm6]	C	T	2.682e^-4	0.985	NON_SYNONYMOUS_CODING CG43710 UPSTREAM CG43709	TF binding site mE1_TFBS_HSA
2R	13432589	2R_13432589_SNP [dm3] 2R_17545084_SNP [dm6]	T	A	2.685e^-4	0.985	UPSTREAM cyp33 DOWNSTREAM CG43370 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	12771467	3L_12771467_SNP [dm3] 3L_12778367_SNP [dm6]	A	T	2.688e^-4	0.985	SYNONYMOUS_CODING CG32106 DOWNSTREAM CG10969
X	3418843	X_3418843_SNP [dm3] X_3524810_SNP [dm6]	C	T	2.706e^-4	0.985	INTRON CG32791
3L	3864639	3L_3864639_SNP [dm3] 3L_3864639_SNP [dm6]	A	T	2.717e^-4	0.985	UPSTREAM CR45379 INTERGENIC
X	19368124	X_19368124_SNP [dm3] X_19474091_SNP [dm6]	A	G	2.719e^-4	0.985	UPSTREAM CG12200 DOWNSTREAM CG32533 INTERGENIC
3L	833472	3L_833472_SNP [dm3] 3L_833472_SNP [dm6]	G	T	2.724e^-4	0.985	UPSTREAM snoRNA:Psi28S-3308 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	16599214	X_16599214_SNP [dm3] X_16705181_SNP [dm6]	A	T	2.726e^-4	0.985	UTR_3_PRIME CG4653 DOWNSTREAM CG9672 INTRON CG4678
2R	9659175	2R_9659175_SNP [dm3] 2R_13771670_SNP [dm6]	C	T	2.726e^-4	0.985	INTRON Cpr50Ca
2L	17476147	2L_17476147_SNP [dm3] 2L_17476147_SNP [dm6]	G	A	2.729e^-4	0.985	INTRON Aac11
2R	15679702	2R_15679702_SNP [dm3] 2R_19792197_SNP [dm6]	A	G	2.729e^-4	0.985	INTERGENIC
2L	14545567	2L_14545567_SNP [dm3] 2L_14545567_SNP [dm6]	G	A	2.731e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1939766	X_1939766_SNP [dm3] X_2045733_SNP [dm6]	T	G	2.741e^-4	0.985	NON_SYNONYMOUS_CODING moody INTRON CG4313	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10896613	3L_10896613_SNP [dm3] 3L_10903513_SNP [dm6]	T	C	2.743e^-4	0.985	INTERGENIC
2R	13436004	2R_13436004_SNP [dm3] 2R_17548499_SNP [dm6]	C	A	2.744e^-4	0.985	UTR_5_PRIME MESR4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10108911	X_10108911_SNP [dm3] X_10214878_SNP [dm6]	T	A	2.760e^-4	0.985	UTR_3_PRIME l_1_G0230 & 1 other DOWNSTREAM l_1_G0230
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	2.761e^-4	0.985	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6059268	3L_6059268_SNP [dm3] 3L_6066168_SNP [dm6]	G	A	2.779e^-4	0.985	UPSTREAM CG42269 INTERGENIC
3R	23822336	3R_23822336_SNP [dm3] 3R_27996614_SNP [dm6]	G	A	2.779e^-4	0.985	INTERGENIC
3R	1270114	3R_1270114_SNP [dm3] 3R_5444392_SNP [dm6]	A	G	2.801e^-4	0.985	INTRON CG14669
2L	15539063	2L_15539063_SNP [dm3] 2L_15539063_SNP [dm6]	T	C	2.801e^-4	0.985	INTERGENIC
3L	17202630	3L_17202630_SNP [dm3] 3L_17209530_SNP [dm6]	G	A	2.802e^-4	0.985	INTRON Rbp6
3L	13116731	3L_13116731_SNP [dm3] 3L_13123631_SNP [dm6]	T	C	2.811e^-4	0.985	INTERGENIC
2L	13997149	2L_13997149_SNP [dm3] 2L_13997149_SNP [dm6]	A	C	2.813e^-4	0.985	INTRON rk
2L	2424807	2L_2424807_SNP [dm3] 2L_2424807_SNP [dm6]	C	G	2.834e^-4	0.985	START_GAINED CG44139 UTR_5_PRIME CG44139 DOWNSTREAM CG9886
X	18526763	X_18526763_SNP [dm3] X_18632730_SNP [dm6]	T	C	2.836e^-4	0.985	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15390481	3R_15390481_SNP [dm3] 3R_19564759_SNP [dm6]	C	T	2.838e^-4	0.985	INTRON Dys
3L	10942203	3L_10942203_SNP [dm3] 3L_10949103_SNP [dm6]	C	T	2.841e^-4	0.985	INTERGENIC
3R	2620446	3R_2620446_SNP [dm3] 3R_6794724_SNP [dm6]	C	T	2.865e^-4	0.985	INTRON Dfd
2R	7667279	2R_7667279_SNP [dm3] 2R_11779774_SNP [dm6]	A	G	2.866e^-4	0.985	DOWNSTREAM CG42493 INTRON ths
2L	2646196	2L_2646196_SNP [dm3] 2L_2646196_SNP [dm6]	C	G	2.874e^-4	0.985	DOWNSTREAM CG9962 EXON CR43852
2R	15691668	2R_15691668_SNP [dm3] 2R_19804163_SNP [dm6]	C	T	2.879e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12770711	3L_12770711_SNP [dm3] 3L_12777611_SNP [dm6]	C	T	2.908e^-4	0.985	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
X	7886097	X_7886097_SNP [dm3] X_7992064_SNP [dm6]	A	T	2.923e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9190060	2R_9190060_SNP [dm3] 2R_13302555_SNP [dm6]	G	A	2.924e^-4	0.985	INTERGENIC
3R	10350081	3R_10350081_SNP [dm3] 3R_14524359_SNP [dm6]	A	T	2.932e^-4	0.985	INTRON Pde6
3L	2791974	3L_2791974_SNP [dm3] 3L_2791974_SNP [dm6]	C	G	2.934e^-4	0.985	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5006112	2L_5006112_SNP [dm3] 2L_5006112_SNP [dm6]	T	G	2.935e^-4	0.985	INTRON Rtnl1
2L	4866345	2L_4866345_SNP [dm3] 2L_4866345_SNP [dm6]	C	G	2.949e^-4	0.985	INTRON pog
X	21475311	X_21475311_SNP [dm3] X_21604284_SNP [dm6]	G	A	2.951e^-4	0.985	INTRON CG14476	transposable element FlyBase
2R	15680708	2R_15680708_SNP [dm3] 2R_19793203_SNP [dm6]	A	G	2.967e^-4	0.985	INTERGENIC
3R	9666344	3R_9666344_SNP [dm3] 3R_13840622_SNP [dm6]	A	C	2.982e^-4	0.985	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6154652	2L_6154652_SNP [dm3] 2L_6154652_SNP [dm6]	A	C	2.985e^-4	0.985	UTR_3_PRIME CG31639 DOWNSTREAM Muc26B	TF binding site mE1_TFBS_chinmo
2L	7528635	2L_7528635_SNP [dm3] 2L_7528635_SNP [dm6]	A	C	2.985e^-4	0.985	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2424871	2L_2424871_SNP [dm3] 2L_2424871_SNP [dm6]	A	G	2.987e^-4	0.985	NON_SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
2L	12547549	2L_12547549_SNP [dm3] 2L_12547549_SNP [dm6]	A	G	2.992e^-4	0.985	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17444685	2L_17444685_SNP [dm3] 2L_17444685_SNP [dm6]	G	C	2.998e^-4	0.985	INTRON dl
2R	9189947	2R_9189947_INS [dm3] 2R_13302442_INS [dm6]	A	AA	3.000e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
3L	20875249	3L_20875249_SNP [dm3] 3L_20882149_SNP [dm6]	C	T	3.004e^-4	0.985	INTRON CG32432
2L	10808623	2L_10808623_SNP [dm3] 2L_10808623_SNP [dm6]	G	T	3.009e^-4	0.985	INTRON Nos
X	19597343	X_19597343_SNP [dm3] X_19703310_SNP [dm6]	G	A	3.025e^-4	0.985	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1151915	3L_1151915_INS [dm3] 3L_1151915_INS [dm6]	T	TAA	3.030e^-4	0.985	INTRON bab2
3R	10351390	3R_10351390_SNP [dm3] 3R_14525668_SNP [dm6]	C	A	3.032e^-4	0.985	INTRON Pde6
3L	7078573	3L_7078573_SNP [dm3] 3L_7085473_SNP [dm6]	T	C	3.033e^-4	0.985	DOWNSTREAM Cpr65Ea INTERGENIC
2R	18411114	2R_18411114_SNP [dm3] 2R_22523609_SNP [dm6]	C	G	3.042e^-4	0.985	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8767344	3R_8767344_SNP [dm3] 3R_12941622_SNP [dm6]	G	A	3.052e^-4	0.985	INTERGENIC
2R	13388189	2R_13388189_SNP [dm3] 2R_17500684_SNP [dm6]	G	T	3.056e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15893851	3L_15893851_SNP [dm3] 3L_15900751_SNP [dm6]	G	T	3.092e^-4	0.985	UTR_3_PRIME sff
2L	1238487	2L_1238487_SNP [dm3] 2L_1238487_SNP [dm6]	T	G	3.100e^-4	0.985	INTERGENIC
3L	3969711	3L_3969711_SNP [dm3] 3L_3969711_SNP [dm6]	A	G	3.107e^-4	0.985	INTERGENIC
3L	2330240	3L_2330240_SNP [dm3] 3L_2330240_SNP [dm6]	A	G	3.118e^-4	0.985	INTRON MsR1
3L	15324482	3L_15324482_SNP [dm3] 3L_15331382_SNP [dm6]	G	T	3.120e^-4	0.985	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20893751	X_20893751_SNP [dm3] X_21022724_SNP [dm6]	T	A	3.120e^-4	0.985	DOWNSTREAM r-cup INTERGENIC
X	13511857	X_13511857_SNP [dm3] X_13617824_SNP [dm6]	G	C	3.128e^-4	0.985	SYNONYMOUS_CODING Tango2	TF binding site BDTNP1_TFBS_dl
X	18920241	X_18920241_INS [dm3] X_19026208_INS [dm6]	A	ATTA	3.134e^-4	0.985	UTR_3_PRIME CG43759
2L	8737742	2L_8737742_SNP [dm3] 2L_8737742_SNP [dm6]	T	C	3.143e^-4	0.985	INTRON raw
2L	1186529	2L_1186529_SNP [dm3] 2L_1186529_SNP [dm6]	G	T	3.147e^-4	0.985	DOWNSTREAM Tgt INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9839402	2R_9839402_SNP [dm3] 2R_13951897_SNP [dm6]	A	G	3.150e^-4	0.985	INTRON AGO1
X	16305818	X_16305818_SNP [dm3] X_16411785_SNP [dm6]	C	A	3.156e^-4	0.985	SYNONYMOUS_CODING CG4301	TF binding site mE1_TFBS_chinmo
X	10828998	X_10828998_SNP [dm3] X_10934965_SNP [dm6]	A	T	3.165e^-4	0.985	INTRON Myo10A
2R	9770687	2R_9770687_SNP [dm3] 2R_13883182_SNP [dm6]	G	A	3.177e^-4	0.985	INTRON shot
2R	6700489	2R_6700489_SNP [dm3] 2R_10812984_SNP [dm6]	T	C	3.187e^-4	0.985	UTR_5_PRIME CG12341 UPSTREAM CG7222 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16639110	X_16639110_SNP [dm3] X_16745077_SNP [dm6]	C	T	3.199e^-4	0.985	SYNONYMOUS_CODING CG9634 DOWNSTREAM Twdlalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12547465	2L_12547465_SNP [dm3] 2L_12547465_SNP [dm6]	T	G	3.201e^-4	0.985	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4169900	2R_4169900_SNP [dm3] 2R_8282395_SNP [dm6]	C	A	3.211e^-4	0.985	INTERGENIC
2R	8782401	2R_8782401_INS [dm3] 2R_12894896_INS [dm6]	T	TATGGACAAA	3.211e^-4	0.985	INTRON vg	TF binding site BDTNP1_TFBS_dl
X	20433498	X_20433498_SNP [dm3] X_20562471_SNP [dm6]	C	T	3.218e^-4	0.985	INTRON RunxB
3R	10653065	3R_10653065_SNP [dm3] 3R_14827343_SNP [dm6]	T	A	3.219e^-4	0.985	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	7256692	3L_7256692_SNP [dm3] 3L_7263592_SNP [dm6]	A	G	3.242e^-4	0.985	INTRON CG14830
3L	3344358	3L_3344358_SNP [dm3] 3L_3344358_SNP [dm6]	A	T	3.245e^-4	0.985	INTRON kst
3L	1151849	3L_1151849_SNP [dm3] 3L_1151849_SNP [dm6]	T	C	3.246e^-4	0.985	INTRON bab2
2R	5187060	2R_5187060_SNP [dm3] 2R_9299555_SNP [dm6]	C	A	3.247e^-4	0.985	UTR_3_PRIME Drep-2	TF binding site mE1_TFBS_cad
3L	3344296	3L_3344296_SNP [dm3] 3L_3344296_SNP [dm6]	A	G	3.253e^-4	0.985	INTRON kst
2R	15691647	2R_15691647_SNP [dm3] 2R_19804142_SNP [dm6]	C	A	3.255e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	21961002	2L_21961002_SNP [dm3] 2L_21961002_SNP [dm6]	T	A	3.256e^-4	0.985	INTERGENIC
3L	12552379	3L_12552379_SNP [dm3] 3L_12559279_SNP [dm6]	C	T	3.264e^-4	0.985	INTRON sowah
X	16927263	X_16927263_SNP [dm3] X_17033230_SNP [dm6]	C	T	3.290e^-4	0.985	UPSTREAM CG45002 INTRON CG45002
3R	2612317	3R_2612317_SNP [dm3] 3R_6786595_SNP [dm6]	C	T	3.291e^-4	0.985	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
3L	17147540	3L_17147540_SNP [dm3] 3L_17154440_SNP [dm6]	G	A	3.294e^-4	0.985	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12184347	3L_12184347_SNP [dm3] 3L_12191247_SNP [dm6]	G	A	3.297e^-4	0.985	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1632777	2L_1632777_DEL [dm3] 2L_1632777_DEL [dm6]	ATTATGTGGG	A	3.304e^-4	0.985	INTERGENIC
2R	9140590	2R_9140590_SNP [dm3] 2R_13253085_SNP [dm6]	T	C	3.316e^-4	0.985	NON_SYNONYMOUS_CODING CG4714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15404333	3L_15404333_SNP [dm3] 3L_15411233_SNP [dm6]	T	A	3.321e^-4	0.985	INTERGENIC
2L	12848211	2L_12848211_SNP [dm3] 2L_12848211_SNP [dm6]	G	A	3.323e^-4	0.985	INTERGENIC
3L	6997111	3L_6997111_SNP [dm3] 3L_7004011_SNP [dm6]	T	G	3.325e^-4	0.985	INTRON Mp
2R	14637095	2R_14637095_SNP [dm3] 2R_18749590_SNP [dm6]	A	C	3.339e^-4	0.985	INTRON Hs3st-A
3L	10942248	3L_10942248_SNP [dm3] 3L_10949148_SNP [dm6]	A	G	3.342e^-4	0.985	INTERGENIC
2R	17136892	2R_17136892_SNP [dm3] 2R_21249387_SNP [dm6]	A	G	3.348e^-4	0.985	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	17970150	3R_17970150_SNP [dm3] 3R_22144428_SNP [dm6]	G	T	3.352e^-4	0.985	INTRON SKIP
X	6555652	X_6555652_SNP [dm3] X_6661619_SNP [dm6]	A	G	3.353e^-4	0.985	UPSTREAM Ctr1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	19660871	2R_19660871_SNP [dm3] 2R_23773348_SNP [dm6]	T	A	3.353e^-4	0.985	INTRON CG9850
3R	21257185	3R_21257185_SNP [dm3] 3R_25431463_SNP [dm6]	T	A	3.354e^-4	0.985	INTRON Fur1
3L	6644946	3L_6644946_SNP [dm3] 3L_6651846_SNP [dm6]	T	G	3.357e^-4	0.985	INTERGENIC
3R	2620357	3R_2620357_SNP [dm3] 3R_6794635_SNP [dm6]	C	T	3.365e^-4	0.985	INTRON Dfd
X	18605276	X_18605276_SNP [dm3] X_18711243_SNP [dm6]	T	A	3.382e^-4	0.985	INTRON CCKLR-17D1 & 1 other	TF binding site mE1_TFBS_chinmo
2L	14545552	2L_14545552_SNP [dm3] 2L_14545552_SNP [dm6]	G	A	3.384e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1609459	2L_1609459_SNP [dm3] 2L_1609459_SNP [dm6]	T	C	3.399e^-4	0.985	INTRON CG31935	TF binding site mE1_TFBS_cad
3R	11141924	3R_11141924_SNP [dm3] 3R_15316202_SNP [dm6]	T	G	3.404e^-4	0.985	UPSTREAM CG14866 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10466227	3L_10466227_SNP [dm3] 3L_10473127_SNP [dm6]	T	C	3.414e^-4	0.985	INTERGENIC
3L	1033805	3L_1033805_SNP [dm3] 3L_1033805_SNP [dm6]	A	G	3.417e^-4	0.985	SYNONYMOUS_CODING trio UPSTREAM CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	12161014	3L_12161014_SNP [dm3] 3L_12167914_SNP [dm6]	A	G	3.425e^-4	0.985	INTRON Rh7	TF binding site mE1_TFBS_cad
2L	17543109	2L_17543109_SNP [dm3] 2L_17543109_SNP [dm6]	A	C	3.433e^-4	0.985	DOWNSTREAM CR43304 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6997121	3L_6997121_SNP [dm3] 3L_7004021_SNP [dm6]	A	G	3.433e^-4	0.985	INTRON Mp
2R	14063808	2R_14063808_SNP [dm3] 2R_18176303_SNP [dm6]	C	A	3.436e^-4	0.985	NON_SYNONYMOUS_CODING CG5726 DOWNSTREAM CG10916	TF binding site mE1_TFBS_cad
X	14461762	X_14461762_SNP [dm3] X_14567729_SNP [dm6]	G	T	3.446e^-4	0.985	INTERGENIC
2R	13525466	2R_13525466_SNP [dm3] 2R_17637961_SNP [dm6]	C	A	3.449e^-4	0.985	INTRON CG10936
3R	15373369	3R_15373369_SNP [dm3] 3R_19547647_SNP [dm6]	A	G	3.449e^-4	0.985	INTRON Dys
3L	2739491	3L_2739491_SNP [dm3] 3L_2739491_SNP [dm6]	T	A	3.453e^-4	0.985	UPSTREAM Acp62F INTRON Mrtf
3L	6997116	3L_6997116_SNP [dm3] 3L_7004016_SNP [dm6]	A	C	3.476e^-4	0.985	INTRON Mp
2L	13095214	2L_13095214_SNP [dm3] 2L_13095214_SNP [dm6]	T	A	3.488e^-4	0.985	INTERGENIC
2R	14406335	2R_14406335_SNP [dm3] 2R_18518830_SNP [dm6]	G	C	3.494e^-4	0.985	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15907927	2L_15907927_SNP [dm3] 2L_15907927_SNP [dm6]	T	A	3.531e^-4	0.985	INTRON beat-Ib
3L	12770710	3L_12770710_SNP [dm3] 3L_12777610_SNP [dm6]	C	T	3.532e^-4	0.985	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2R	19380024	2R_19380024_SNP [dm3] 2R_23492501_SNP [dm6]	G	T	3.541e^-4	0.985	DOWNSTREAM CG43795 INTERGENIC
3L	15918069	3L_15918069_SNP [dm3] 3L_15924969_SNP [dm6]	C	A	3.548e^-4	0.985	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14315563	3R_14315563_SNP [dm3] 3R_18489841_SNP [dm6]	A	T	3.553e^-4	0.985	INTRON fru
3R	14315544	3R_14315544_SNP [dm3] 3R_18489822_SNP [dm6]	C	A	3.558e^-4	0.985	INTRON fru
X	16511438	X_16511438_SNP [dm3] X_16617405_SNP [dm6]	G	T	3.559e^-4	0.985	INTRON CG9782
3R	19977326	3R_19977326_SNP [dm3] 3R_24151604_SNP [dm6]	C	T	3.559e^-4	0.985	SYNONYMOUS_CODING p38a UPSTREAM CG6178	TF binding site mE1_TFBS_sens
3L	18577031	3L_18577031_SNP [dm3] 3L_18583931_SNP [dm6]	C	T	3.566e^-4	0.985	EXON CR45435
3R	10351577	3R_10351577_SNP [dm3] 3R_14525855_SNP [dm6]	A	C	3.567e^-4	0.985	INTRON Pde6
2L	7661407	2L_7661407_DEL [dm3] 2L_7661407_DEL [dm6]	CC	C	3.575e^-4	0.985	INTRON Slob
3L	10772435	3L_10772435_SNP [dm3] 3L_10779335_SNP [dm6]	T	C	3.586e^-4	0.985	INTERGENIC
3L	16824000	3L_16824000_SNP [dm3] 3L_16830900_SNP [dm6]	T	C	3.599e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14509461	2L_14509461_SNP [dm3] 2L_14509461_SNP [dm6]	G	T	3.619e^-4	0.985	DOWNSTREAM CR45693 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19873202	2L_19873202_SNP [dm3] 2L_19873202_SNP [dm6]	G	T	3.623e^-4	0.985	INTRON sick	TF binding site BDTNP1_TFBS_prd
X	6956223	X_6956223_SNP [dm3] X_7062190_SNP [dm6]	T	C	3.628e^-4	0.985	INTRON CG12541
3R	15195939	3R_15195939_SNP [dm3] 3R_19370217_SNP [dm6]	A	G	3.647e^-4	0.985	INTRON Ino80
2L	8788914	2L_8788914_SNP [dm3] 2L_8788914_SNP [dm6]	C	T	3.648e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	863488	2R_863488_SNP [dm3] 2R_4975983_SNP [dm6]	G	C	3.652e^-4	0.985	INTRON Ir41a
3L	2791972	3L_2791972_SNP [dm3] 3L_2791972_SNP [dm6]	C	A	3.659e^-4	0.985	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19613291	3R_19613291_SNP [dm3] 3R_23787569_SNP [dm6]	T	A	3.659e^-4	0.985	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3L	8268096	3L_8268096_SNP [dm3] 3L_8274996_SNP [dm6]	G	C	3.664e^-4	0.985	INTRON Dscam4
2R	9625388	2R_9625388_SNP [dm3] 2R_13737883_SNP [dm6]	C	T	3.666e^-4	0.985	INTRON fas
X	2551144	X_2551144_SNP [dm3] X_2657111_SNP [dm6]	C	T	3.673e^-4	0.985	INTRON sgg
2R	17095185	2R_17095185_SNP [dm3] 2R_21207680_SNP [dm6]	G	T	3.675e^-4	0.985	INTRON CG44245 & 1 other
3L	10915072	3L_10915072_SNP [dm3] 3L_10921972_SNP [dm6]	C	A	3.683e^-4	0.985	INTERGENIC
3L	3189972	3L_3189972_SNP [dm3] 3L_3189972_SNP [dm6]	C	G	3.686e^-4	0.985	UPSTREAM CG14958 & 1 other DOWNSTREAM CG14965 INTERGENIC
3L	15931686	3L_15931686_SNP [dm3] 3L_15938586_SNP [dm6]	C	T	3.701e^-4	0.985	INTRON Pka-C3
X	20434730	X_20434730_SNP [dm3] X_20563703_SNP [dm6]	T	C	3.703e^-4	0.985	INTRON RunxB
3R	17114377	3R_17114377_SNP [dm3] 3R_21288655_SNP [dm6]	T	G	3.704e^-4	0.985	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	13074526	2L_13074526_SNP [dm3] 2L_13074526_SNP [dm6]	T	G	3.705e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
X	4063277	X_4063277_SNP [dm3] X_4169244_SNP [dm6]	G	C	3.710e^-4	0.985	INTRON Fas2
X	11728795	X_11728795_SNP [dm3] X_11834762_SNP [dm6]	T	C	3.718e^-4	0.985	SYNONYMOUS_CODING rudhira DOWNSTREAM rudhira	TF binding site mE1_TFBS_cad
2L	18557486	2L_18557486_SNP [dm3] 2L_18557486_SNP [dm6]	T	C	3.726e^-4	0.985	INTRON Pde11
X	20274276	X_20274276_SNP [dm3] X_20403249_SNP [dm6]	A	G	3.729e^-4	0.985	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
X	10031041	X_10031041_SNP [dm3] X_10137008_SNP [dm6]	A	G	3.741e^-4	0.985	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17611881	2L_17611881_SNP [dm3] 2L_17611881_SNP [dm6]	T	C	3.741e^-4	0.985	INTERGENIC
3L	10047912	3L_10047912_SNP [dm3] 3L_10054812_SNP [dm6]	A	C	3.745e^-4	0.985	INTRON dpr6
2R	8782399	2R_8782399_SNP [dm3] 2R_12894894_SNP [dm6]	A	G	3.757e^-4	0.985	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	9190017	2R_9190017_SNP [dm3] 2R_13302512_SNP [dm6]	G	A	3.758e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
2R	8987230	2R_8987230_SNP [dm3] 2R_13099725_SNP [dm6]	A	T	3.759e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15084569	3R_15084569_SNP [dm3] 3R_19258847_SNP [dm6]	A	G	3.761e^-4	0.985	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11427806	3L_11427806_SNP [dm3] 3L_11434706_SNP [dm6]	A	T	3.762e^-4	0.985	UTR_3_PRIME CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	19059056	3L_19059056_SNP [dm3] 3L_19065956_SNP [dm6]	T	C	3.763e^-4	0.985	UTR_3_PRIME CG6812 DOWNSTREAM Mkp3
2L	12547702	2L_12547702_SNP [dm3] 2L_12547702_SNP [dm6]	A	T	3.768e^-4	0.985	INTERGENIC	transposable element FlyBase
3L	15632430	3L_15632430_SNP [dm3] 3L_15639330_SNP [dm6]	C	T	3.781e^-4	0.985	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10274024	X_10274024_SNP [dm3] X_10379991_SNP [dm6]	C	A	3.787e^-4	0.985	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	9084131	2R_9084131_SNP [dm3] 2R_13196626_SNP [dm6]	A	T	3.789e^-4	0.985	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr
2R	9595645	2R_9595645_SNP [dm3] 2R_13708140_SNP [dm6]	T	G	3.799e^-4	0.985	INTRON fas
X	12853611	X_12853611_SNP [dm3] X_12959578_SNP [dm6]	G	T	3.801e^-4	0.985	INTRON CG32642
2R	19491547	2R_19491547_SNP [dm3] 2R_23604024_SNP [dm6]	G	A	3.803e^-4	0.985	SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
3R	21053501	3R_21053501_SNP [dm3] 3R_25227779_SNP [dm6]	C	T	3.811e^-4	0.985	INTRON Cad96Cb
3L	20871702	3L_20871702_SNP [dm3] 3L_20878602_SNP [dm6]	G	A	3.822e^-4	0.985	INTRON CG32432
X	16565941	X_16565941_SNP [dm3] X_16671908_SNP [dm6]	T	A	3.824e^-4	0.985	INTRON CG13012
2L	9938038	2L_9938038_SNP [dm3] 2L_9938038_SNP [dm6]	A	G	3.827e^-4	0.985	UTR_5_PRIME CG31712 UPSTREAM CG4619 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	9189166	2R_9189166_SNP [dm3] 2R_13301661_SNP [dm6]	T	G	3.839e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
2L	6694026	2L_6694026_DEL [dm3] 2L_6694026_DEL [dm6]	ATTTTAC	A	3.856e^-4	0.985	INTRON Tsp
2L	15898419	2L_15898419_SNP [dm3] 2L_15898419_SNP [dm6]	T	C	3.858e^-4	0.985	DOWNSTREAM CG31823 INTERGENIC
3L	17996498	3L_17996498_SNP [dm3] 3L_18003398_SNP [dm6]	C	T	3.859e^-4	0.985	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	17996970	3L_17996970_SNP [dm3] 3L_18003870_SNP [dm6]	A	T	3.859e^-4	0.985	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B
3L	17997098	3L_17997098_SNP [dm3] 3L_18003998_SNP [dm6]	A	T	3.859e^-4	0.985	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_z
3R	16053282	3R_16053282_SNP [dm3] 3R_20227560_SNP [dm6]	T	G	3.861e^-4	0.985	SYNONYMOUS_CODING Nlg4	TF binding site mE1_TFBS_cad
3L	10168647	3L_10168647_SNP [dm3] 3L_10175547_SNP [dm6]	A	C	3.893e^-4	0.985	INTRON dpr10
3L	15324453	3L_15324453_SNP [dm3] 3L_15331353_SNP [dm6]	T	G	3.914e^-4	0.985	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10685062	2L_10685062_SNP [dm3] 2L_10685062_SNP [dm6]	C	T	3.921e^-4	0.985	UPSTREAM CG7299 INTERGENIC
2R	9178424	2R_9178424_INS [dm3] 2R_13290919_INS [dm6]	A	AC	3.924e^-4	0.985	INTRON Dh31-R
2R	9178529	2R_9178529_SNP [dm3] 2R_13291024_SNP [dm6]	T	C	3.924e^-4	0.985	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo
2L	4069751	2L_4069751_SNP [dm3] 2L_4069751_SNP [dm6]	T	C	3.934e^-4	0.985	INTRON ed
3L	9305250	3L_9305250_SNP [dm3] 3L_9312150_SNP [dm6]	A	G	3.941e^-4	0.985	INTERGENIC
3L	4656505	3L_4656505_SNP [dm3] 3L_4656505_SNP [dm6]	A	T	3.941e^-4	0.985	INTRON axo
2R	9189361	2R_9189361_DEL [dm3] 2R_13301856_DEL [dm6]	GCGCCATTG	G	3.947e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
X	20475147	X_20475147_SNP [dm3] X_20604120_SNP [dm6]	C	T	3.949e^-4	0.985	SYNONYMOUS_CODING RunxA	TF binding site mE1_TFBS_chinmo
3R	10351379	3R_10351379_SNP [dm3] 3R_14525657_SNP [dm6]	G	C	3.951e^-4	0.985	INTRON Pde6
2R	9190521	2R_9190521_SNP [dm3] 2R_13303016_SNP [dm6]	C	T	3.956e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19139974	3R_19139974_SNP [dm3] 3R_23314252_SNP [dm6]	G	A	3.957e^-4	0.985	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12841273	2L_12841273_SNP [dm3] 2L_12841273_SNP [dm6]	G	A	3.962e^-4	0.985	UPSTREAM CR44971 EXON CR44970
2L	16527154	2L_16527154_SNP [dm3] 2L_16527154_SNP [dm6]	A	T	3.963e^-4	0.985	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb
2R	16362339	2R_16362339_SNP [dm3] 2R_20474834_SNP [dm6]	A	G	3.978e^-4	0.985	INTRON CG12484
2L	15000623	2L_15000623_DEL [dm3] 2L_15000623_DEL [dm6]	CC	C	3.979e^-4	0.985	INTERGENIC
3R	18580659	3R_18580659_SNP [dm3] 3R_22754937_SNP [dm6]	G	A	3.980e^-4	0.985	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18592821	3L_18592821_SNP [dm3] 3L_18599721_SNP [dm6]	C	T	3.986e^-4	0.985	DOWNSTREAM CG13380 & 1 other INTERGENIC
3L	1839352	3L_1839352_SNP [dm3] 3L_1839352_SNP [dm6]	A	C	4.002e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
X	6154241	X_6154241_SNP [dm3] X_6260208_SNP [dm6]	C	A	4.004e^-4	0.985	UPSTREAM CG3781 INTRON schlank
3L	1493086	3L_1493086_SNP [dm3] 3L_1493086_SNP [dm6]	G	A	4.005e^-4	0.985	SPLICE_SITE_REGION CG12084 INTRON CG12084	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	1284127	2L_1284127_DEL [dm3] 2L_1284127_DEL [dm6]	ATAATAAAGACCGA...	GTTT	4.023e^-4	0.985	INTRON robo3
X	12801479	X_12801479_SNP [dm3] X_12907446_SNP [dm6]	A	G	4.024e^-4	0.985	SYNONYMOUS_CODING mRpL49 DOWNSTREAM Brms1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17973163	3R_17973163_SNP [dm3] 3R_22147441_SNP [dm6]	T	A	4.040e^-4	0.985	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	13012073	2R_13012073_SNP [dm3] 2R_17124568_SNP [dm6]	G	A	4.049e^-4	0.985	UPSTREAM Amy-d & 1 other EXON CR45272
2R	9194276	2R_9194276_SNP [dm3] 2R_13306771_SNP [dm6]	T	A	4.059e^-4	0.985	INTERGENIC
3L	12141586	3L_12141586_SNP [dm3] 3L_12148486_SNP [dm6]	C	T	4.061e^-4	0.985	UPSTREAM eap INTRON Nrx-IV
2L	13874454	2L_13874454_SNP [dm3] 2L_13874454_SNP [dm6]	A	G	4.074e^-4	0.985	INTRON CenG1A
2L	13874456	2L_13874456_SNP [dm3] 2L_13874456_SNP [dm6]	T	A	4.074e^-4	0.985	INTRON CenG1A
3R	25560850	3R_25560850_SNP [dm3] 3R_29735128_SNP [dm6]	A	T	4.081e^-4	0.985	UTR_3_PRIME Kul DOWNSTREAM CG7601
X	14520568	X_14520568_SNP [dm3] X_14626535_SNP [dm6]	A	T	4.084e^-4	0.985	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	8638844	2R_8638844_SNP [dm3] 2R_12751339_SNP [dm6]	T	C	4.089e^-4	0.985	UTR_3_PRIME CG42663 DOWNSTREAM mos
X	12005586	X_12005586_SNP [dm3] X_12111553_SNP [dm6]	A	C	4.090e^-4	0.985	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
2L	8889258	2L_8889258_SNP [dm3] 2L_8889258_SNP [dm6]	G	A	4.095e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	4069723	2L_4069723_SNP [dm3] 2L_4069723_SNP [dm6]	G	A	4.107e^-4	0.985	INTRON ed
3R	17733870	3R_17733870_DEL [dm3] 3R_21908148_DEL [dm6]	TCTGCT	T	4.109e^-4	0.985	DOWNSTREAM CG6678 INTERGENIC
3R	23594198	3R_23594198_SNP [dm3] 3R_27768476_SNP [dm6]	C	T	4.118e^-4	0.985	UTR_3_PRIME CG34353
3L	17172866	3L_17172866_SNP [dm3] 3L_17179766_SNP [dm6]	C	T	4.133e^-4	0.985	INTRON Rbp6
2R	19492149	2R_19492149_SNP [dm3] 2R_23604626_SNP [dm6]	G	T	4.133e^-4	0.985	NON_SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13966095	2L_13966095_DEL [dm3] 2L_13966095_DEL [dm6]	CTAATAAAACAGATAATCAA...	C	4.141e^-4	0.985	INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4969824	3R_4969824_SNP [dm3] 3R_9144102_SNP [dm6]	A	G	4.146e^-4	0.985	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6570314	3R_6570314_SNP [dm3] 3R_10744592_SNP [dm6]	T	C	4.147e^-4	0.985	INTRON TkR86C
X	8625543	X_8625543_SNP [dm3] X_8731510_SNP [dm6]	C	T	4.148e^-4	0.985	INTERGENIC
3L	12133345	3L_12133345_SNP [dm3] 3L_12140245_SNP [dm6]	G	A	4.155e^-4	0.985	INTRON RhoGAP68F
3L	12133352	3L_12133352_SNP [dm3] 3L_12140252_SNP [dm6]	C	T	4.155e^-4	0.985	INTRON RhoGAP68F
3R	5786357	3R_5786357_SNP [dm3] 3R_9960635_SNP [dm6]	A	G	4.157e^-4	0.985	INTRON Glut4EF
3L	10942146	3L_10942146_SNP [dm3] 3L_10949046_SNP [dm6]	C	T	4.158e^-4	0.985	INTERGENIC
2L	12997190	2L_12997190_SNP [dm3] 2L_12997190_SNP [dm6]	G	T	4.164e^-4	0.985	INTRON CG12404
X	16973601	X_16973601_SNP [dm3] X_17079568_SNP [dm6]	C	G	4.176e^-4	0.985	SYNONYMOUS_CODING CG4949 DOWNSTREAM CG8945	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17430719	2L_17430719_INS [dm3] 2L_17430719_INS [dm6]	A	TT	4.180e^-4	0.985	DOWNSTREAM CR44409 INTRON Dif
3R	26858314	3R_26858314_SNP [dm3] 3R_31032592_SNP [dm6]	G	A	4.191e^-4	0.985	INTERGENIC
2L	4106003	2L_4106003_SNP [dm3] 2L_4106003_SNP [dm6]	C	T	4.202e^-4	0.985	INTRON ed
2L	13135308	2L_13135308_SNP [dm3] 2L_13135308_SNP [dm6]	T	G	4.206e^-4	0.985	DOWNSTREAM CG5122 INTERGENIC
3L	20875981	3L_20875981_SNP [dm3] 3L_20882881_SNP [dm6]	C	T	4.224e^-4	0.985	INTRON CG32432
3L	12416727	3L_12416727_SNP [dm3] 3L_12423627_SNP [dm6]	T	C	4.225e^-4	0.985	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14569275	2L_14569275_SNP [dm3] 2L_14569275_SNP [dm6]	A	G	4.231e^-4	0.985	INTERGENIC
X	3417908	X_3417908_SNP [dm3] X_3523875_SNP [dm6]	C	G	4.246e^-4	0.985	INTRON CG32791
3R	20797355	3R_20797355_DEL [dm3] 3R_24971633_DEL [dm6]	AA	A	4.249e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3484681	2L_3484681_SNP [dm3] 2L_3484681_SNP [dm6]	G	A	4.252e^-4	0.985	INTRON CG15414
X	10415141	X_10415141_DEL [dm3] X_10521108_DEL [dm6]	CC	C	4.254e^-4	0.985	INTRON spri
3L	14972252	3L_14972252_SNP [dm3] 3L_14979152_SNP [dm6]	A	G	4.255e^-4	0.985	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	17611885	2L_17611885_SNP [dm3] 2L_17611885_SNP [dm6]	G	T	4.264e^-4	0.985	INTERGENIC
3L	10898165	3L_10898165_SNP [dm3] 3L_10905065_SNP [dm6]	C	T	4.274e^-4	0.985	INTERGENIC
2R	16378278	2R_16378278_SNP [dm3] 2R_20490773_SNP [dm6]	A	G	4.274e^-4	0.985	DOWNSTREAM CR44643 INTERGENIC
3L	3661932	3L_3661932_SNP [dm3] 3L_3661932_SNP [dm6]	A	T	4.278e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21194835	2L_21194835_SNP [dm3] 2L_21194835_SNP [dm6]	C	T	4.302e^-4	0.985	INTRON Ret
3L	10474391	3L_10474391_SNP [dm3] 3L_10481291_SNP [dm6]	C	G	4.305e^-4	0.985	UPSTREAM A2bp1 INTERGENIC
3L	7698354	3L_7698354_SNP [dm3] 3L_7705254_SNP [dm6]	T	A	4.307e^-4	0.985	UTR_3_PRIME Ank2 INTRON CG32373 & 1 other
3L	12133320	3L_12133320_SNP [dm3] 3L_12140220_SNP [dm6]	C	A	4.309e^-4	0.985	INTRON RhoGAP68F
3L	17264968	3L_17264968_SNP [dm3] 3L_17271868_SNP [dm6]	C	T	4.311e^-4	0.985	INTERGENIC
3L	9683651	3L_9683651_SNP [dm3] 3L_9690551_SNP [dm6]	T	A	4.323e^-4	0.985	INTRON CG6767
2R	17136895	2R_17136895_SNP [dm3] 2R_21249390_SNP [dm6]	T	C	4.324e^-4	0.985	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	15753938	3R_15753938_SNP [dm3] 3R_19928216_SNP [dm6]	T	A	4.325e^-4	0.985	NON_SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15753939	3R_15753939_SNP [dm3] 3R_19928217_SNP [dm6]	G	C	4.325e^-4	0.985	NON_SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12672584	2L_12672584_SNP [dm3] 2L_12672584_SNP [dm6]	A	G	4.329e^-4	0.985	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25787913	3R_25787913_SNP [dm3] 3R_29962191_SNP [dm6]	T	G	4.329e^-4	0.985	INTRON TkR99D
3L	15403441	3L_15403441_SNP [dm3] 3L_15410341_SNP [dm6]	T	C	4.331e^-4	0.985	INTERGENIC
3L	10935756	3L_10935756_SNP [dm3] 3L_10942656_SNP [dm6]	G	C	4.337e^-4	0.985	INTERGENIC
2L	8788780	2L_8788780_SNP [dm3] 2L_8788780_SNP [dm6]	G	C	4.339e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18635571	2R_18635571_SNP [dm3] 2R_22748066_SNP [dm6]	G	C	4.339e^-4	0.985	INTRON CG42260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	626281	2R_626281_SNP [dm3] 2R_4738776_SNP [dm6]	A	G	4.360e^-4	0.985	INTERGENIC
3L	10898518	3L_10898518_SNP [dm3] 3L_10905418_SNP [dm6]	C	G	4.368e^-4	0.985	INTERGENIC
2L	11470356	2L_11470356_SNP [dm3] 2L_11470356_SNP [dm6]	T	C	4.381e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	17182879	3L_17182879_SNP [dm3] 3L_17189779_SNP [dm6]	A	C	4.382e^-4	0.985	INTRON Rbp6
2L	3550220	2L_3550220_INS [dm3] 2L_3550220_INS [dm6]	T	TATAT	4.387e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6060367	2R_6060367_INS [dm3] 2R_10172862_INS [dm6]	T	TTTATGCAT	4.388e^-4	0.985	INTRON KCNQ
3L	9947280	3L_9947280_SNP [dm3] 3L_9954180_SNP [dm6]	G	C	4.405e^-4	0.985	INTRON CG34356
3R	19977298	3R_19977298_SNP [dm3] 3R_24151576_SNP [dm6]	C	G	4.408e^-4	0.985	NON_SYNONYMOUS_CODING p38a UPSTREAM CG6178	TF binding site mE1_TFBS_sens
2R	13427396	2R_13427396_SNP [dm3] 2R_17539891_SNP [dm6]	G	T	4.414e^-4	0.985	SYNONYMOUS_CODING CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19203710	2R_19203710_SNP [dm3] 2R_23316187_SNP [dm6]	G	C	4.423e^-4	0.985	INTERGENIC
X	11579212	X_11579212_SNP [dm3] X_11685179_SNP [dm6]	C	T	4.424e^-4	0.985	INTRON bif
3L	4161658	3L_4161658_SNP [dm3] 3L_4161658_SNP [dm6]	A	T	4.425e^-4	0.985	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	20876186	3L_20876186_SNP [dm3] 3L_20883086_SNP [dm6]	C	T	4.429e^-4	0.985	INTRON CG32432
3L	6839481	3L_6839481_SNP [dm3] 3L_6846381_SNP [dm6]	A	C	4.440e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	9683395	X_9683395_SNP [dm3] X_9789362_SNP [dm6]	G	A	4.444e^-4	0.985	INTRON CG32698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9946499	2L_9946499_DEL [dm3] 2L_9946499_DEL [dm6]	GTCATATTGATTTTGAGTG...	G	4.446e^-4	0.985	INTRON CG5853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14511668	2L_14511668_SNP [dm3] 2L_14511668_SNP [dm6]	C	T	4.449e^-4	0.985	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14473100	2L_14473100_SNP [dm3] 2L_14473100_SNP [dm6]	T	G	4.453e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12132880	3L_12132880_SNP [dm3] 3L_12139780_SNP [dm6]	A	G	4.458e^-4	0.985	INTRON RhoGAP68F
2R	18406740	2R_18406740_SNP [dm3] 2R_22519235_SNP [dm6]	C	G	4.474e^-4	0.985	INTRON px
3L	17185745	3L_17185745_SNP [dm3] 3L_17192645_SNP [dm6]	A	G	4.483e^-4	0.985	INTRON Rbp6
2L	14949883	2L_14949883_SNP [dm3] 2L_14949883_SNP [dm6]	T	C	4.486e^-4	0.985	INTRON CG42313
2R	10250363	2R_10250363_SNP [dm3] 2R_14362858_SNP [dm6]	G	T	4.510e^-4	0.985	UPSTREAM Tfb1 DOWNSTREAM Arc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17999038	3L_17999038_SNP [dm3] 3L_18005938_SNP [dm6]	T	A	4.516e^-4	0.985	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	19313138	2R_19313138_SNP [dm3] 2R_23425615_SNP [dm6]	T	A	4.520e^-4	0.985	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
3R	2633730	3R_2633730_SNP [dm3] 3R_6808008_SNP [dm6]	A	T	4.521e^-4	0.985	DOWNSTREAM CR42651 INTERGENIC
3L	15404290	3L_15404290_SNP [dm3] 3L_15411190_SNP [dm6]	A	G	4.525e^-4	0.985	INTERGENIC
3L	15409043	3L_15409043_SNP [dm3] 3L_15415943_SNP [dm6]	T	C	4.545e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18435640	2L_18435640_DEL [dm3] 2L_18435640_DEL [dm6]	TGA	T	4.560e^-4	0.985	INTERGENIC
2L	13040058	2L_13040058_SNP [dm3] 2L_13040058_SNP [dm6]	C	A	4.565e^-4	0.985	INTRON CG9932
3R	19485993	3R_19485993_SNP [dm3] 3R_23660271_SNP [dm6]	T	C	4.576e^-4	0.985	INTRON CG31145
X	3414800	X_3414800_SNP [dm3] X_3520767_SNP [dm6]	C	T	4.578e^-4	0.985	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_inv
3L	4091486	3L_4091486_SNP [dm3] 3L_4091486_SNP [dm6]	A	T	4.589e^-4	0.985	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2L	8793520	2L_8793520_SNP [dm3] 2L_8793520_SNP [dm6]	A	C	4.591e^-4	0.985	INTERGENIC
3R	6754902	3R_6754902_SNP [dm3] 3R_10929180_SNP [dm6]	T	C	4.591e^-4	0.985	INTERGENIC
2R	9194764	2R_9194764_SNP [dm3] 2R_13307259_SNP [dm6]	T	C	4.595e^-4	0.985	INTERGENIC
X	14319613	X_14319613_SNP [dm3] X_14425580_SNP [dm6]	G	T	4.613e^-4	0.985	INTRON dpr8
X	16600000	X_16600000_SNP [dm3] X_16705967_SNP [dm6]	G	A	4.631e^-4	0.985	DOWNSTREAM CG9672 & 1 other INTRON CG4678	TF binding site mE1_TFBS_chinmo
3L	1205091	3L_1205091_SNP [dm3] 3L_1205091_SNP [dm6]	C	A	4.637e^-4	0.985	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
3L	11459172	3L_11459172_SNP [dm3] 3L_11466072_SNP [dm6]	T	C	4.637e^-4	0.985	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16953986	2R_16953986_SNP [dm3] 2R_21066481_SNP [dm6]	A	T	4.645e^-4	0.985	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9182465	2R_9182465_SNP [dm3] 2R_13294960_SNP [dm6]	T	A	4.652e^-4	0.985	INTRON Dh31-R
3L	7831670	3L_7831670_INS [dm3] 3L_7838570_INS [dm6]	T	TATTT	4.661e^-4	0.985	INTRON Pdp1	regulatory region REDfly_CRMs
X	11579120	X_11579120_SNP [dm3] X_11685087_SNP [dm6]	C	A	4.663e^-4	0.985	INTRON bif
3L	13882092	3L_13882092_SNP [dm3] 3L_13888992_SNP [dm6]	C	A	4.664e^-4	0.985	INTRON dysc
3L	13071744	3L_13071744_SNP [dm3] 3L_13078644_SNP [dm6]	T	C	4.665e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2425273	2L_2425273_SNP [dm3] 2L_2425273_SNP [dm6]	G	T	4.666e^-4	0.985	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	4.675e^-4	0.985	INTERGENIC
2L	12249918	2L_12249918_SNP [dm3] 2L_12249918_SNP [dm6]	T	A	4.683e^-4	0.985	INTRON aret
2L	17254988	2L_17254988_SNP [dm3] 2L_17254988_SNP [dm6]	C	A	4.684e^-4	0.985	INTRON beat-IIIc
2L	21967473	2L_21967473_SNP [dm3] 2L_21967473_SNP [dm6]	G	A	4.690e^-4	0.985	INTERGENIC
2L	2424620	2L_2424620_SNP [dm3] 2L_2424620_SNP [dm6]	T	C	4.701e^-4	0.985	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	8151448	2L_8151448_SNP [dm3] 2L_8151448_SNP [dm6]	T	C	4.701e^-4	0.985	INTRON CG8552 & 1 other
3L	15918625	3L_15918625_SNP [dm3] 3L_15925525_SNP [dm6]	C	A	4.703e^-4	0.985	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15162745	2L_15162745_SNP [dm3] 2L_15162745_SNP [dm6]	T	C	4.708e^-4	0.985	UTR_3_PRIME CG4168
3L	19956232	3L_19956232_SNP [dm3] 3L_19963132_SNP [dm6]	T	C	4.715e^-4	0.985	INTRON Ac76E
3L	1839604	3L_1839604_SNP [dm3] 3L_1839604_SNP [dm6]	G	A	4.728e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
2R	10487398	2R_10487398_SNP [dm3] 2R_14599893_SNP [dm6]	A	G	4.733e^-4	0.985	SYNONYMOUS_CODING RpI1
3L	20856191	3L_20856191_SNP [dm3] 3L_20863091_SNP [dm6]	C	A	4.733e^-4	0.985	INTRON CG32432
3L	1088938	3L_1088938_SNP [dm3] 3L_1088938_SNP [dm6]	G	C	4.735e^-4	0.985	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14061275	2R_14061275_SNP [dm3] 2R_18173770_SNP [dm6]	C	G	4.741e^-4	0.985	UTR_5_PRIME CG10916 DOWNSTREAM CR45315	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	19689592	3L_19689592_SNP [dm3] 3L_19696492_SNP [dm6]	C	T	4.747e^-4	0.985	INTERGENIC
2R	16083156	2R_16083156_DEL [dm3] 2R_20195651_DEL [dm6]	CC	C	4.751e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12302630	2R_12302630_SNP [dm3] 2R_16415125_SNP [dm6]	T	C	4.753e^-4	0.985	NON_SYNONYMOUS_CODING Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b	TF binding site mE1_TFBS_inv
2R	6571165	2R_6571165_SNP [dm3] 2R_10683660_SNP [dm6]	C	T	4.753e^-4	0.985	INTRON stan
2R	6571021	2R_6571021_DEL [dm3] 2R_10683516_DEL [dm6]	GGAG	G	4.773e^-4	0.985	INTRON stan	TF binding site BDTNP1_TFBS_dl
2R	8782554	2R_8782554_SNP [dm3] 2R_12895049_SNP [dm6]	T	C	4.777e^-4	0.985	INTRON vg	TF binding site BDTNP1_TFBS_dl
3R	19485985	3R_19485985_SNP [dm3] 3R_23660263_SNP [dm6]	A	G	4.780e^-4	0.985	INTRON CG31145
X	8352023	X_8352023_SNP [dm3] X_8457990_SNP [dm6]	C	A	4.786e^-4	0.985	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
2L	17525496	2L_17525496_SNP [dm3] 2L_17525496_SNP [dm6]	A	G	4.791e^-4	0.985	UTR_3_PRIME Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
2R	18204971	2R_18204971_INS [dm3] 2R_22317466_INS [dm6]	T	TAT	4.793e^-4	0.985	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9157502	2L_9157502_SNP [dm3] 2L_9157502_SNP [dm6]	T	A	4.795e^-4	0.985	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10485109	2R_10485109_SNP [dm3] 2R_14597604_SNP [dm6]	G	T	4.811e^-4	0.985	SYNONYMOUS_CODING RpI1
2R	9105015	2R_9105015_SNP [dm3] 2R_13217510_SNP [dm6]	C	T	4.814e^-4	0.985	INTRON CG4630	TF binding site mE1_TFBS_cad
2R	5390881	2R_5390881_SNP [dm3] 2R_9503376_SNP [dm6]	G	A	4.818e^-4	0.985	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC
3R	20936638	3R_20936638_SNP [dm3] 3R_25110916_SNP [dm6]	A	T	4.829e^-4	0.985	NON_SYNONYMOUS_CODING CG13650
3L	13820584	3L_13820584_SNP [dm3] 3L_13827484_SNP [dm6]	C	T	4.830e^-4	0.985	INTERGENIC
2R	17564889	2R_17564889_SNP [dm3] 2R_21677384_SNP [dm6]	C	T	4.830e^-4	0.985	SPLICE_SITE_REGION CG30263 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3311057	3L_3311057_SNP [dm3] 3L_3311057_SNP [dm6]	G	A	4.834e^-4	0.985	INTRON ZnT63C
3L	10942189	3L_10942189_SNP [dm3] 3L_10949089_SNP [dm6]	G	A	4.836e^-4	0.985	INTERGENIC
3L	9318380	3L_9318380_SNP [dm3] 3L_9325280_SNP [dm6]	T	C	4.852e^-4	0.985	INTERGENIC
2R	16919509	2R_16919509_SNP [dm3] 2R_21032004_SNP [dm6]	C	A	4.858e^-4	0.985	INTERGENIC
X	20433516	X_20433516_INS [dm3] X_20562489_INS [dm6]	A	AA	4.859e^-4	0.985	INTRON RunxB
2R	18213993	2R_18213993_SNP [dm3] 2R_22326488_SNP [dm6]	T	C	4.861e^-4	0.985	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3860465	2L_3860465_SNP [dm3] 2L_3860465_SNP [dm6]	A	G	4.866e^-4	0.985	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2R	10497272	2R_10497272_SNP [dm3] 2R_14609767_SNP [dm6]	C	G	4.875e^-4	0.985	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19973816	2L_19973816_SNP [dm3] 2L_19973816_SNP [dm6]	T	A	4.876e^-4	0.985	INTRON CG43861
3L	3490347	3L_3490347_SNP [dm3] 3L_3490347_SNP [dm6]	T	G	4.886e^-4	0.985	INTRON CG42324
2L	2424825	2L_2424825_SNP [dm3] 2L_2424825_SNP [dm6]	G	A	4.887e^-4	0.985	UTR_5_PRIME CG44139 DOWNSTREAM CG9886
2R	9654287	2R_9654287_SNP [dm3] 2R_13766782_SNP [dm6]	C	A	4.887e^-4	0.985	INTERGENIC
2L	8738147	2L_8738147_SNP [dm3] 2L_8738147_SNP [dm6]	C	T	4.888e^-4	0.985	INTRON raw
3R	25209644	3R_25209644_SNP [dm3] 3R_29383922_SNP [dm6]	C	T	4.894e^-4	0.985	INTRON Ptp99A
3R	25209656	3R_25209656_SNP [dm3] 3R_29383934_SNP [dm6]	G	A	4.894e^-4	0.985	INTRON Ptp99A
3R	25209664	3R_25209664_SNP [dm3] 3R_29383942_SNP [dm6]	C	G	4.894e^-4	0.985	INTRON Ptp99A
X	10906249	X_10906249_SNP [dm3] X_11012216_SNP [dm6]	T	G	4.894e^-4	0.985	INTRON CG42339
3L	5339787	3L_5339787_SNP [dm3] 3L_5346687_SNP [dm6]	C	A	4.896e^-4	0.985	INTRON lama
3L	5339826	3L_5339826_SNP [dm3] 3L_5346726_SNP [dm6]	C	T	4.896e^-4	0.985	INTRON lama
2R	17153259	2R_17153259_SNP [dm3] 2R_21265754_SNP [dm6]	A	G	4.907e^-4	0.985	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	2737639	3L_2737639_SNP [dm3] 3L_2737639_SNP [dm6]	G	T	4.908e^-4	0.985	INTRON Mrtf
2L	18819793	2L_18819793_SNP [dm3] 2L_18819793_SNP [dm6]	A	G	4.909e^-4	0.985	INTRON CG17324
2R	20192600	2R_20192600_DEL [dm3] 2R_24305077_DEL [dm6]	ATGA	A	4.916e^-4	0.985	UPSTREAM betaTub60D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	10359305	3R_10359305_SNP [dm3] 3R_14533583_SNP [dm6]	A	C	4.922e^-4	0.985	INTRON Pde6
X	12005599	X_12005599_SNP [dm3] X_12111566_SNP [dm6]	A	G	4.927e^-4	0.985	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
2R	5390895	2R_5390895_SNP [dm3] 2R_9503390_SNP [dm6]	C	A	4.928e^-4	0.985	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC
3L	3759387	3L_3759387_SNP [dm3] 3L_3759387_SNP [dm6]	T	C	4.930e^-4	0.985	UPSTREAM CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2573043	3R_2573043_SNP [dm3] 3R_6747321_SNP [dm6]	C	T	4.930e^-4	0.985	INTRON CG34297
3L	1151911	3L_1151911_INS [dm3] 3L_1151911_INS [dm6]	A	AAATATGT	4.937e^-4	0.985	INTRON bab2
2L	12547477	2L_12547477_DEL [dm3] 2L_12547477_DEL [dm6]	AGTAATT	A	4.939e^-4	0.985	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
X	20719387	X_20719387_SNP [dm3] X_20848360_SNP [dm6]	A	G	4.939e^-4	0.985	INTRON shakB
2L	2795426	2L_2795426_SNP [dm3] 2L_2795426_SNP [dm6]	C	T	4.952e^-4	0.985	INTRON Syt1
3L	8268069	3L_8268069_SNP [dm3] 3L_8274969_SNP [dm6]	T	C	4.955e^-4	0.985	INTRON Dscam4
2R	19217926	2R_19217926_SNP [dm3] 2R_23330403_SNP [dm6]	G	T	4.963e^-4	0.985	UPSTREAM CG30413 INTERGENIC
2R	13499428	2R_13499428_SNP [dm3] 2R_17611923_SNP [dm6]	A	G	4.980e^-4	0.985	INTRON CG10936
2L	14579091	2L_14579091_SNP [dm3] 2L_14579091_SNP [dm6]	G	A	4.983e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2601318	3R_2601318_DEL [dm3] 3R_6775596_DEL [dm6]	CA	C	4.984e^-4	0.985	UPSTREAM mir-993 INTRON CR42721	TF binding site mE1_TFBS_cad
2R	9595654	2R_9595654_SNP [dm3] 2R_13708149_SNP [dm6]	A	G	5.013e^-4	0.985	INTRON fas
3L	13116772	3L_13116772_SNP [dm3] 3L_13123672_SNP [dm6]	G	A	5.014e^-4	0.985	INTERGENIC
3R	25548810	3R_25548810_SNP [dm3] 3R_29723088_SNP [dm6]	A	G	5.027e^-4	0.985	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	18583845	3L_18583845_SNP [dm3] 3L_18590745_SNP [dm6]	C	T	5.036e^-4	0.985	DOWNSTREAM CG7271 INTERGENIC	transposable element FlyBase
2R	9213467	2R_9213467_SNP [dm3] 2R_13325962_SNP [dm6]	G	T	5.040e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6394343	3L_6394343_SNP [dm3] 3L_6401243_SNP [dm6]	A	T	5.042e^-4	0.985	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
2R	6792331	2R_6792331_SNP [dm3] 2R_10904826_SNP [dm6]	C	T	5.046e^-4	0.985	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
X	15792112	X_15792112_SNP [dm3] X_15898079_SNP [dm6]	C	A	5.048e^-4	0.985	INTRON shi
2L	20705748	2L_20705748_SNP [dm3] 2L_20705748_SNP [dm6]	C	T	5.063e^-4	0.985	INTRON Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13612498	2L_13612498_SNP [dm3] 2L_13612498_SNP [dm6]	G	A	5.066e^-4	0.985	INTRON kuz
2R	19317126	2R_19317126_SNP [dm3] 2R_23429603_SNP [dm6]	G	T	5.069e^-4	0.985	INTRON CG9815
2R	6704842	2R_6704842_SNP [dm3] 2R_10817337_SNP [dm6]	C	T	5.078e^-4	0.985	NON_SYNONYMOUS_CODING dgo	TF binding site mE1_TFBS_sens
2L	2795820	2L_2795820_SNP [dm3] 2L_2795820_SNP [dm6]	C	T	5.085e^-4	0.985	UPSTREAM Syt1 INTRON Syt1
3L	19057133	3L_19057133_SNP [dm3] 3L_19064033_SNP [dm6]	A	C	5.088e^-4	0.985	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8163348	3L_8163348_SNP [dm3] 3L_8170248_SNP [dm6]	A	G	5.094e^-4	0.985	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10636357	3L_10636357_SNP [dm3] 3L_10643257_SNP [dm6]	T	A	5.109e^-4	0.985	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
2L	12547486	2L_12547486_SNP [dm3] 2L_12547486_SNP [dm6]	G	A	5.122e^-4	0.985	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10490585	2L_10490585_SNP [dm3] 2L_10490585_SNP [dm6]	C	T	5.134e^-4	0.985	SYNONYMOUS_CODING CG13144 DOWNSTREAM CG6144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15795879	3R_15795879_SNP [dm3] 3R_19970157_SNP [dm6]	G	A	5.145e^-4	0.985	INTRON Hs6st
3L	9945902	3L_9945902_SNP [dm3] 3L_9952802_SNP [dm6]	T	C	5.154e^-4	0.985	SYNONYMOUS_CODING CG34356
3L	13837822	3L_13837822_SNP [dm3] 3L_13844722_SNP [dm6]	A	G	5.160e^-4	0.985	SYNONYMOUS_CODING Tsp68C
3R	748212	3R_748212_SNP [dm3] 3R_4922490_SNP [dm6]	G	C	5.162e^-4	0.985	INTRON Cdep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	496322	2L_496322_SNP [dm3] 2L_496322_SNP [dm6]	C	T	5.166e^-4	0.985	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6300901	2L_6300901_SNP [dm3] 2L_6300901_SNP [dm6]	G	A	5.170e^-4	0.985	INTRON Ddr
3R	26869333	3R_26869333_SNP [dm3] 3R_31043611_SNP [dm6]	A	T	5.172e^-4	0.985	DOWNSTREAM CG33920 INTRON CanA1
3L	8838459	3L_8838459_SNP [dm3] 3L_8845359_SNP [dm6]	T	C	5.177e^-4	0.985	INTRON dally
2L	6694061	2L_6694061_INS [dm3] 2L_6694061_INS [dm6]	T	TTCTGTATAT	5.178e^-4	0.985	INTRON Tsp
2L	3431365	2L_3431365_SNP [dm3] 2L_3431365_SNP [dm6]	T	C	5.188e^-4	0.985	INTERGENIC
2L	12502415	2L_12502415_SNP [dm3] 2L_12502415_SNP [dm6]	T	C	5.191e^-4	0.985	INTRON bun
3R	24035705	3R_24035705_SNP [dm3] 3R_28209983_SNP [dm6]	A	G	5.194e^-4	0.985	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2608031	X_2608031_DEL [dm3] X_2713998_DEL [dm6]	GG	G	5.196e^-4	0.985	UPSTREAM CG2694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	19313238	2R_19313238_SNP [dm3] 2R_23425715_SNP [dm6]	C	G	5.197e^-4	0.985	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2640802	2L_2640802_SNP [dm3] 2L_2640802_SNP [dm6]	G	A	5.209e^-4	0.985	INTERGENIC
3L	6581209	3L_6581209_SNP [dm3] 3L_6588109_SNP [dm6]	T	C	5.214e^-4	0.985	INTRON CG18769 & 1 other
3R	26655759	3R_26655759_INS [dm3] 3R_30830037_INS [dm6]	G	GCAT	5.225e^-4	0.985	INTRON CG15544
3L	15974536	3L_15974536_SNP [dm3] 3L_15981436_SNP [dm6]	A	G	5.233e^-4	0.985	NON_SYNONYMOUS_CODING CG17027 INTRON brm	TF binding site mE1_TFBS_cad
3L	5342278	3L_5342278_SNP [dm3] 3L_5349178_SNP [dm6]	A	T	5.245e^-4	0.985	INTRON lama
3L	9513824	3L_9513824_SNP [dm3] 3L_9520724_SNP [dm6]	C	T	5.252e^-4	0.985	INTRON CG33700
2L	2050073	2L_2050073_SNP [dm3] 2L_2050073_SNP [dm6]	C	G	5.255e^-4	0.985	INTERGENIC
2R	8903466	2R_8903466_SNP [dm3] 2R_13015961_SNP [dm6]	G	A	5.256e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15918607	3L_15918607_SNP [dm3] 3L_15925507_SNP [dm6]	T	A	5.261e^-4	0.985	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19190450	2R_19190450_SNP [dm3] 2R_23302927_SNP [dm6]	A	G	5.268e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16823910	3L_16823910_SNP [dm3] 3L_16830810_SNP [dm6]	T	G	5.272e^-4	0.985	INTERGENIC
X	17832523	X_17832523_INS [dm3] X_17938490_INS [dm6]	T	TT	5.274e^-4	0.985	INTRON Sh
3L	6839482	3L_6839482_SNP [dm3] 3L_6846382_SNP [dm6]	T	A	5.275e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19207159	2R_19207159_SNP [dm3] 2R_23319636_SNP [dm6]	A	G	5.278e^-4	0.985	UPSTREAM CG30412 INTERGENIC
2L	14025796	2L_14025796_DEL [dm3] 2L_14025796_DEL [dm6]	TT	T	5.281e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4124329	2L_4124329_SNP [dm3] 2L_4124329_SNP [dm6]	T	C	5.291e^-4	0.985	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8302505	3L_8302505_SNP [dm3] 3L_8309405_SNP [dm6]	A	T	5.298e^-4	0.985	UPSTREAM BI-1 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9190008	2R_9190008_SNP [dm3] 2R_13302503_SNP [dm6]	G	T	5.303e^-4	0.985	DOWNSTREAM CG17047 INTERGENIC
2L	2414325	2L_2414325_SNP [dm3] 2L_2414325_SNP [dm6]	G	C	5.307e^-4	0.985	INTRON CG18641
2L	10813660	2L_10813660_SNP [dm3] 2L_10813660_SNP [dm6]	A	G	5.318e^-4	0.985	INTRON Nos
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	5.324e^-4	0.985	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9180690	2R_9180690_SNP [dm3] 2R_13293185_SNP [dm6]	T	A	5.335e^-4	0.985	INTRON Dh31-R
3R	19772576	3R_19772576_SNP [dm3] 3R_23946854_SNP [dm6]	G	T	5.335e^-4	0.985	UTR_5_PRIME CG12268 INTRON CG12268
2R	4197398	2R_4197398_SNP [dm3] 2R_8309893_SNP [dm6]	G	A	5.341e^-4	0.985	DOWNSTREAM CR44449 EXON CR44448
2L	18505410	2L_18505410_SNP [dm3] 2L_18505410_SNP [dm6]	G	A	5.344e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14298087	2R_14298087_SNP [dm3] 2R_18410582_SNP [dm6]	C	G	5.348e^-4	0.985	DOWNSTREAM GstE9 INTRON imd
3R	13161798	3R_13161798_SNP [dm3] 3R_17336076_SNP [dm6]	G	A	5.354e^-4	0.985	INTRON beat-IIa
X	21464154	X_21464154_SNP [dm3] X_21593127_SNP [dm6]	C	A	5.356e^-4	0.985	INTERGENIC
2L	17443632	2L_17443632_INS [dm3] 2L_17443632_INS [dm6]	C	ACTCCAAGA	5.356e^-4	0.985	INTRON dl
2R	14607671	2R_14607671_SNP [dm3] 2R_18720166_SNP [dm6]	G	T	5.359e^-4	0.985	UPSTREAM mir-4982 INTRON Hs3st-A	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5814382	2L_5814382_SNP [dm3] 2L_5814382_SNP [dm6]	T	C	5.359e^-4	0.985	INTERGENIC
2L	18618548	2L_18618548_SNP [dm3] 2L_18618548_SNP [dm6]	C	G	5.359e^-4	0.985	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	8950224	2R_8950224_SNP [dm3] 2R_13062719_SNP [dm6]	T	C	5.374e^-4	0.985	INTRON Drl-2
2L	1630476	2L_1630476_INS [dm3] 2L_1630476_INS [dm6]	T	TT	5.379e^-4	0.985	INTERGENIC
3R	21053504	3R_21053504_SNP [dm3] 3R_25227782_SNP [dm6]	G	A	5.382e^-4	0.985	INTRON Cad96Cb
2L	20963057	2L_20963057_SNP [dm3] 2L_20963057_SNP [dm6]	G	C	5.396e^-4	0.985	INTERGENIC
X	18040305	X_18040305_SNP [dm3] X_18146272_SNP [dm6]	A	T	5.408e^-4	0.985	INTERGENIC
3L	10723008	3L_10723008_SNP [dm3] 3L_10729908_SNP [dm6]	T	A	5.408e^-4	0.985	INTERGENIC
3L	12182189	3L_12182189_SNP [dm3] 3L_12189089_SNP [dm6]	C	T	5.410e^-4	0.985	SYNONYMOUS_CODING Est-6
2R	10809478	2R_10809478_SNP [dm3] 2R_14921973_SNP [dm6]	T	C	5.424e^-4	0.985	INTRON CG10249
3L	9791132	3L_9791132_SNP [dm3] 3L_9798032_SNP [dm6]	C	T	5.424e^-4	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
2R	13437910	2R_13437910_SNP [dm3] 2R_17550405_SNP [dm6]	A	G	5.435e^-4	0.985	NON_SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
3L	1205051	3L_1205051_SNP [dm3] 3L_1205051_SNP [dm6]	G	T	5.451e^-4	0.985	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2L	6694082	2L_6694082_MNP [dm3] 2L_6694082_MNP [dm6]	ATG	GGA	5.453e^-4	0.985	INTRON Tsp
2R	9878162	2R_9878162_SNP [dm3] 2R_13990657_SNP [dm6]	T	A	5.456e^-4	0.985	UTR_5_PRIME RN-tre UPSTREAM mam & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2444725	2L_2444725_DEL [dm3] 2L_2444725_DEL [dm6]	CGC	C	5.457e^-4	0.985	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
3R	14061552	3R_14061552_SNP [dm3] 3R_18235830_SNP [dm6]	C	T	5.459e^-4	0.985	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4081074	2L_4081074_SNP [dm3] 2L_4081074_SNP [dm6]	A	G	5.460e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	18876967	3L_18876967_SNP [dm3] 3L_18883867_SNP [dm6]	A	G	5.467e^-4	0.985	INTRON CG3961
X	16040444	X_16040444_SNP [dm3] X_16146411_SNP [dm6]	T	G	5.467e^-4	0.985	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3L	6826102	3L_6826102_SNP [dm3] 3L_6833002_SNP [dm6]	C	T	5.468e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	748217	3R_748217_SNP [dm3] 3R_4922495_SNP [dm6]	A	T	5.469e^-4	0.985	INTRON Cdep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1995078	2L_1995078_SNP [dm3] 2L_1995078_SNP [dm6]	C	A	5.477e^-4	0.985	INTERGENIC
2L	14204684	2L_14204684_SNP [dm3] 2L_14204684_SNP [dm6]	C	A	5.479e^-4	0.985	INTRON Dyrk2
2R	13854804	2R_13854804_SNP [dm3] 2R_17967299_SNP [dm6]	A	C	5.482e^-4	0.985	INTERGENIC
X	13511820	X_13511820_SNP [dm3] X_13617787_SNP [dm6]	A	T	5.484e^-4	0.985	INTRON Tango2	TF binding site BDTNP1_TFBS_dl
X	13511839	X_13511839_SNP [dm3] X_13617806_SNP [dm6]	C	T	5.484e^-4	0.985	SPLICE_SITE_REGION Tango2 INTRON Tango2	TF binding site BDTNP1_TFBS_dl
3L	21783508	3L_21783508_SNP [dm3] 3L_21790408_SNP [dm6]	G	C	5.491e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4080996	2L_4080996_SNP [dm3] 2L_4080996_SNP [dm6]	G	C	5.494e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13164005	3L_13164005_SNP [dm3] 3L_13170905_SNP [dm6]	A	G	5.495e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	23822298	3R_23822298_SNP [dm3] 3R_27996576_SNP [dm6]	C	T	5.511e^-4	0.985	INTERGENIC
2L	13717208	2L_13717208_SNP [dm3] 2L_13717208_SNP [dm6]	T	A	5.532e^-4	0.985	UTR_5_PRIME CG31814
3L	17828513	3L_17828513_SNP [dm3] 3L_17835413_SNP [dm6]	A	T	5.535e^-4	0.985	UPSTREAM CG32189 INTRON Grd
3L	3865444	3L_3865444_SNP [dm3] 3L_3865444_SNP [dm6]	G	A	5.536e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9318474	3L_9318474_SNP [dm3] 3L_9325374_SNP [dm6]	C	T	5.539e^-4	0.985	INTERGENIC
2L	6117553	2L_6117553_SNP [dm3] 2L_6117553_SNP [dm6]	T	C	5.540e^-4	0.985	UPSTREAM CG31642 INTRON stai
X	12506986	X_12506986_SNP [dm3] X_12612953_SNP [dm6]	C	T	5.544e^-4	0.985	DOWNSTREAM CR45621 INTRON CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4353546	3L_4353546_SNP [dm3] 3L_4353546_SNP [dm6]	T	A	5.545e^-4	0.985	INTRON Cip4
3R	5793520	3R_5793520_SNP [dm3] 3R_9967798_SNP [dm6]	A	T	5.556e^-4	0.985	INTRON Glut4EF
3L	10805708	3L_10805708_SNP [dm3] 3L_10812608_SNP [dm6]	T	A	5.558e^-4	0.985	INTERGENIC
3L	15478851	3L_15478851_SNP [dm3] 3L_15485751_SNP [dm6]	T	C	5.560e^-4	0.985	UPSTREAM Ran-like INTERGENIC
3R	10163661	3R_10163661_SNP [dm3] 3R_14337939_SNP [dm6]	A	G	5.562e^-4	0.985	INTRON NK7.1
3R	18507600	3R_18507600_SNP [dm3] 3R_22681878_SNP [dm6]	G	A	5.570e^-4	0.985	UTR_3_PRIME CG45058	TF binding site mE1_TFBS_cad
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	5.573e^-4	0.985	INTRON CG3036
2L	7045696	2L_7045696_SNP [dm3] 2L_7045696_SNP [dm6]	C	A	5.576e^-4	0.985	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	18989812	3R_18989812_SNP [dm3] 3R_23164090_SNP [dm6]	A	T	5.577e^-4	0.985	INTERGENIC
2L	13873034	2L_13873034_SNP [dm3] 2L_13873034_SNP [dm6]	T	C	5.579e^-4	0.985	INTRON CenG1A
3R	23945288	3R_23945288_SNP [dm3] 3R_28119566_SNP [dm6]	C	A	5.581e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20797383	3R_20797383_SNP [dm3] 3R_24971661_SNP [dm6]	A	T	5.582e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16673505	3L_16673505_SNP [dm3] 3L_16680405_SNP [dm6]	C	T	5.583e^-4	0.985	INTRON Lasp & 1 other
2R	9183544	2R_9183544_DEL [dm3] 2R_13296039_DEL [dm6]	TT	T	5.588e^-4	0.985	UPSTREAM Dh31-R INTERGENIC
2L	9590445	2L_9590445_SNP [dm3] 2L_9590445_SNP [dm6]	A	G	5.592e^-4	0.985	SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
2L	10685066	2L_10685066_SNP [dm3] 2L_10685066_SNP [dm6]	G	T	5.597e^-4	0.985	UPSTREAM CG7299 INTERGENIC
X	3419402	X_3419402_SNP [dm3] X_3525369_SNP [dm6]	A	T	5.600e^-4	0.985	INTRON CG32791
3L	9791142	3L_9791142_SNP [dm3] 3L_9798042_SNP [dm6]	T	C	5.609e^-4	0.985	UPSTREAM Ilp1 & 1 other INTERGENIC
3L	13116780	3L_13116780_SNP [dm3] 3L_13123680_SNP [dm6]	T	A	5.610e^-4	0.985	INTERGENIC
2R	19313044	2R_19313044_SNP [dm3] 2R_23425521_SNP [dm6]	C	A	5.612e^-4	0.985	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2R	16920485	2R_16920485_SNP [dm3] 2R_21032980_SNP [dm6]	C	T	5.612e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17518151	X_17518151_SNP [dm3] X_17624118_SNP [dm6]	T	G	5.617e^-4	0.985	SYNONYMOUS_CODING stas DOWNSTREAM stas	TF binding site mE1_TFBS_HSA
X	16722795	X_16722795_SNP [dm3] X_16828762_SNP [dm6]	A	G	5.618e^-4	0.985	UPSTREAM CG13004 INTRON CG13004
X	8714069	X_8714069_SNP [dm3] X_8820036_SNP [dm6]	T	G	5.626e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8714105	X_8714105_DEL [dm3] X_8820072_DEL [dm6]	TT	T	5.633e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16897078	X_16897078_SNP [dm3] X_17003045_SNP [dm6]	G	T	5.636e^-4	0.985	INTRON CG45002
3L	10465626	3L_10465626_SNP [dm3] 3L_10472526_SNP [dm6]	G	A	5.637e^-4	0.985	INTERGENIC
2L	20849599	2L_20849599_SNP [dm3] 2L_20849599_SNP [dm6]	C	A	5.637e^-4	0.985	NON_SYNONYMOUS_CODING CG14402 DOWNSTREAM CG31676
3R	25209336	3R_25209336_SNP [dm3] 3R_29383614_SNP [dm6]	G	A	5.638e^-4	0.985	INTRON Ptp99A
2L	13040115	2L_13040115_SNP [dm3] 2L_13040115_SNP [dm6]	C	G	5.652e^-4	0.985	INTRON CG9932
2R	6468198	2R_6468198_SNP [dm3] 2R_10580693_SNP [dm6]	G	T	5.658e^-4	0.985	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	4080985	2L_4080985_SNP [dm3] 2L_4080985_SNP [dm6]	C	T	5.668e^-4	0.985	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21798126	3R_21798126_SNP [dm3] 3R_25972404_SNP [dm6]	T	C	5.673e^-4	0.985	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15548481	2R_15548481_SNP [dm3] 2R_19660976_SNP [dm6]	A	T	5.685e^-4	0.985	UPSTREAM mir-6-3 & 1 other DOWNSTREAM mir-6-1 & 5 others EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16566294	X_16566294_SNP [dm3] X_16672261_SNP [dm6]	A	G	5.691e^-4	0.985	INTRON CG13012
2L	14521836	2L_14521836_SNP [dm3] 2L_14521836_SNP [dm6]	C	T	5.706e^-4	0.985	INTERGENIC
X	15792275	X_15792275_SNP [dm3] X_15898242_SNP [dm6]	G	A	5.706e^-4	0.985	INTRON shi
X	16599968	X_16599968_SNP [dm3] X_16705935_SNP [dm6]	A	T	5.708e^-4	0.985	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3L	1205019	3L_1205019_DEL [dm3] 3L_1205019_DEL [dm6]	CGTATTTACGGTGCGGC...	C	5.722e^-4	0.985	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2R	19313078	2R_19313078_SNP [dm3] 2R_23425555_SNP [dm6]	G	C	5.724e^-4	0.985	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2R	6375371	2R_6375371_SNP [dm3] 2R_10487866_SNP [dm6]	A	T	5.727e^-4	0.985	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2821813	2R_2821813_SNP [dm3] 2R_6934308_SNP [dm6]	C	T	5.735e^-4	0.985	INTRON mim	TF binding site BDTNP1_TFBS_prd
X	16782494	X_16782494_SNP [dm3] X_16888461_SNP [dm6]	A	G	5.740e^-4	0.985	UTR_3_PRIME CG4880 DOWNSTREAM CR43768
2L	17545113	2L_17545113_SNP [dm3] 2L_17545113_SNP [dm6]	C	A	5.749e^-4	0.985	INTERGENIC
3R	6904648	3R_6904648_SNP [dm3] 3R_11078926_SNP [dm6]	T	A	5.750e^-4	0.985	INTERGENIC
3L	10898166	3L_10898166_SNP [dm3] 3L_10905066_SNP [dm6]	C	A	5.756e^-4	0.985	INTERGENIC
2L	14545086	2L_14545086_SNP [dm3] 2L_14545086_SNP [dm6]	A	T	5.759e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10359465	3L_10359465_SNP [dm3] 3L_10366365_SNP [dm6]	C	A	5.767e^-4	0.985	EXON CR44327
2R	9057364	2R_9057364_SNP [dm3] 2R_13169859_SNP [dm6]	A	C	5.774e^-4	0.985	INTRON Spt-I EXON CR45142
X	3418337	X_3418337_SNP [dm3] X_3524304_SNP [dm6]	C	A	5.776e^-4	0.985	INTRON CG32791
3L	19322490	3L_19322490_SNP [dm3] 3L_19329390_SNP [dm6]	G	A	5.780e^-4	0.985	INTRON pip
3L	12771512	3L_12771512_SNP [dm3] 3L_12778412_SNP [dm6]	T	C	5.785e^-4	0.985	SYNONYMOUS_CODING CG32106 DOWNSTREAM CG10969
X	2488862	X_2488862_SNP [dm3] X_2594829_SNP [dm6]	C	T	5.797e^-4	0.985	INTRON egh
2L	8772481	2L_8772481_SNP [dm3] 2L_8772481_SNP [dm6]	T	C	5.799e^-4	0.985	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3L	3759675	3L_3759675_SNP [dm3] 3L_3759675_SNP [dm6]	G	C	5.809e^-4	0.985	UPSTREAM CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
3L	10895024	3L_10895024_SNP [dm3] 3L_10901924_SNP [dm6]	T	C	5.812e^-4	0.985	INTERGENIC
2L	12547624	2L_12547624_DEL [dm3] 2L_12547624_DEL [dm6]	AGT	CA	5.818e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12770700	3L_12770700_SNP [dm3] 3L_12777600_SNP [dm6]	A	T	5.823e^-4	0.985	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3L	17985963	3L_17985963_SNP [dm3] 3L_17992863_SNP [dm6]	T	C	5.825e^-4	0.985	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5886460	3L_5886460_SNP [dm3] 3L_5893360_SNP [dm6]	G	A	5.826e^-4	0.985	INTERGENIC
3R	5795277	3R_5795277_SNP [dm3] 3R_9969555_SNP [dm6]	T	C	5.827e^-4	0.985	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2794748	2L_2794748_SNP [dm3] 2L_2794748_SNP [dm6]	T	C	5.838e^-4	0.985	INTRON Syt1
3R	22258089	3R_22258089_SNP [dm3] 3R_26432367_SNP [dm6]	C	A	5.843e^-4	0.985	INTERGENIC
3L	8808300	3L_8808300_SNP [dm3] 3L_8815200_SNP [dm6]	C	T	5.858e^-4	0.985	INTERGENIC
2R	15549970	2R_15549970_SNP [dm3] 2R_19662465_SNP [dm6]	G	A	5.861e^-4	0.985	UTR_5_PRIME CG11018 UPSTREAM mir-286 & 3 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	9469843	2L_9469843_INS [dm3] 2L_9469843_INS [dm6]	A	AA	5.864e^-4	0.985	UPSTREAM CR43769 INTERGENIC
2L	18328987	2L_18328987_SNP [dm3] 2L_18328987_SNP [dm6]	T	A	5.876e^-4	0.985	INTRON Fas3
2R	3927728	2R_3927728_SNP [dm3] 2R_8040223_SNP [dm6]	G	A	5.878e^-4	0.985	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo
3R	7333810	3R_7333810_SNP [dm3] 3R_11508088_SNP [dm6]	A	G	5.885e^-4	0.985	INTERGENIC
2R	8549444	2R_8549444_SNP [dm3] 2R_12661939_SNP [dm6]	C	T	5.887e^-4	0.985	UPSTREAM nemy INTRON nemy
2R	17935885	2R_17935885_SNP [dm3] 2R_22048380_SNP [dm6]	T	C	5.890e^-4	0.985	INTERGENIC
2L	9882744	2L_9882744_SNP [dm3] 2L_9882744_SNP [dm6]	G	C	5.898e^-4	0.985	INTRON nAChRalpha6
2R	16907175	2R_16907175_SNP [dm3] 2R_21019670_SNP [dm6]	A	G	5.901e^-4	0.985	INTRON RIC-3
3L	1839375	3L_1839375_SNP [dm3] 3L_1839375_SNP [dm6]	T	G	5.904e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
3L	1839381	3L_1839381_SNP [dm3] 3L_1839381_SNP [dm6]	T	C	5.904e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
3L	1839387	3L_1839387_SNP [dm3] 3L_1839387_SNP [dm6]	G	A	5.904e^-4	0.985	DOWNSTREAM Cpr62Bc INTERGENIC
2R	9182603	2R_9182603_SNP [dm3] 2R_13295098_SNP [dm6]	A	G	5.906e^-4	0.985	INTRON Dh31-R
2L	891194	2L_891194_SNP [dm3] 2L_891194_SNP [dm6]	C	T	5.906e^-4	0.985	INTERGENIC
X	16639416	X_16639416_SNP [dm3] X_16745383_SNP [dm6]	T	C	5.907e^-4	0.985	INTRON CG9634	TF binding site mE1_TFBS_HSA
2L	2050076	2L_2050076_SNP [dm3] 2L_2050076_SNP [dm6]	A	T	5.908e^-4	0.985	INTERGENIC
2L	2050077	2L_2050077_SNP [dm3] 2L_2050077_SNP [dm6]	T	C	5.908e^-4	0.985	INTERGENIC
3R	5601182	3R_5601182_SNP [dm3] 3R_9775460_SNP [dm6]	G	T	5.910e^-4	0.985	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
2L	13123749	2L_13123749_SNP [dm3] 2L_13123749_SNP [dm6]	T	C	5.912e^-4	0.985	INTERGENIC
2R	10567888	2R_10567888_SNP [dm3] 2R_14680383_SNP [dm6]	G	A	5.930e^-4	0.985	INTRON mspo
2R	19677190	2R_19677190_SNP [dm3] 2R_23789667_SNP [dm6]	T	A	5.934e^-4	0.985	DOWNSTREAM CG15800 INTRON CG9850
3L	1577751	3L_1577751_SNP [dm3] 3L_1577751_SNP [dm6]	C	A	5.936e^-4	0.985	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	612107	3L_612107_SNP [dm3] 3L_612107_SNP [dm6]	C	A	5.938e^-4	0.985	INTERGENIC
3L	12022217	3L_12022217_SNP [dm3] 3L_12029117_SNP [dm6]	T	G	5.938e^-4	0.985	DOWNSTREAM CR43994 INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5647347	3L_5647347_SNP [dm3] 3L_5654247_SNP [dm6]	A	G	5.939e^-4	0.985	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22823741	3R_22823741_DEL [dm3] 3R_26998019_DEL [dm6]	TAGT	T	5.947e^-4	0.985	INTRON RYa-R
2R	15811120	2R_15811120_SNP [dm3] 2R_19923615_SNP [dm6]	C	A	5.951e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	10889547	X_10889547_SNP [dm3] X_10995514_SNP [dm6]	G	A	5.970e^-4	0.985	INTRON CG42339

By genomic position
Variant impact
Gene name

RPL32_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results