DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.639e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1077 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25754162	3R_25754162_SNP [dm3] 3R_29928440_SNP [dm6]	T	C	1.100e^-6	0.904	SYNONYMOUS_CODING CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13567452	3L_13567452_SNP [dm3] 3L_13574352_SNP [dm6]	T	C	1.403e^-6	0.904	INTRON bru-3
2L	1628858	2L_1628858_SNP [dm3] 2L_1628858_SNP [dm6]	C	G	2.538e^-6	0.904	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16016420	3R_16016420_SNP [dm3] 3R_20190698_SNP [dm6]	G	T	4.046e^-6	0.904	INTERGENIC
3R	24028148	3R_24028148_SNP [dm3] 3R_28202426_SNP [dm6]	C	G	4.188e^-6	0.904	INTRON CG34354
3L	13351575	3L_13351575_SNP [dm3] 3L_13358475_SNP [dm6]	C	A	4.672e^-6	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7578049	2L_7578049_SNP [dm3] 2L_7578049_SNP [dm6]	A	C	5.858e^-6	0.904	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7835460	3L_7835460_SNP [dm3] 3L_7842360_SNP [dm6]	G	A	6.516e^-6	0.904	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11093426	2L_11093426_SNP [dm3] 2L_11093426_SNP [dm6]	A	G	6.751e^-6	0.904	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2611458	3R_2611458_SNP [dm3] 3R_6785736_SNP [dm6]	A	T	9.892e^-6	0.904	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
X	19882687	X_19882687_SNP [dm3] X_19988654_SNP [dm6]	T	A	1.056e^-5	0.904	INTERGENIC
X	19882703	X_19882703_SNP [dm3] X_19988670_SNP [dm6]	C	T	1.056e^-5	0.904	INTERGENIC
2L	6025156	2L_6025156_SNP [dm3] 2L_6025156_SNP [dm6]	C	A	1.108e^-5	0.904	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	9804027	X_9804027_SNP [dm3] X_9909994_SNP [dm6]	C	T	1.154e^-5	0.904	SYNONYMOUS_CODING CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2296994	3R_2296994_SNP [dm3] 3R_6471272_SNP [dm6]	A	G	1.160e^-5	0.904	DOWNSTREAM Neurochondrin INTERGENIC
2L	14240367	2L_14240367_SNP [dm3] 2L_14240367_SNP [dm6]	G	T	1.187e^-5	0.904	UPSTREAM CR44216 INTERGENIC
3R	25746313	3R_25746313_SNP [dm3] 3R_29920591_SNP [dm6]	A	G	1.323e^-5	0.904	UPSTREAM trp INTERGENIC
3R	25746325	3R_25746325_SNP [dm3] 3R_29920603_SNP [dm6]	T	C	1.323e^-5	0.904	UPSTREAM trp INTERGENIC
X	8830725	X_8830725_SNP [dm3] X_8936692_SNP [dm6]	C	T	1.332e^-5	0.904	INTRON rdgA
3R	8563619	3R_8563619_SNP [dm3] 3R_12737897_SNP [dm6]	G	C	1.593e^-5	0.904	INTERGENIC
3R	26484896	3R_26484896_SNP [dm3] 3R_30659174_SNP [dm6]	C	T	1.762e^-5	0.904	INTERGENIC
3R	26057507	3R_26057507_SNP [dm3] 3R_30231785_SNP [dm6]	C	T	1.846e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
2L	5596767	2L_5596767_SNP [dm3] 2L_5596767_SNP [dm6]	A	G	1.851e^-5	0.904	UPSTREAM CG18266 INTERGENIC
2L	7165913	2L_7165913_SNP [dm3] 2L_7165913_SNP [dm6]	G	A	1.860e^-5	0.904	INTERGENIC
X	21112366	X_21112366_SNP [dm3] X_21241339_SNP [dm6]	G	A	2.134e^-5	0.904	INTRON CG32521
3R	14899828	3R_14899828_SNP [dm3] 3R_19074106_SNP [dm6]	A	T	2.305e^-5	0.904	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	20782104	3R_20782104_SNP [dm3] 3R_24956382_SNP [dm6]	C	T	2.339e^-5	0.904	INTERGENIC
2L	6025183	2L_6025183_SNP [dm3] 2L_6025183_SNP [dm6]	G	C	2.384e^-5	0.904	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	8334679	X_8334679_SNP [dm3] X_8440646_SNP [dm6]	T	C	2.498e^-5	0.904	SYNONYMOUS_CODING CG1440 DOWNSTREAM CG12123
3L	13566900	3L_13566900_SNP [dm3] 3L_13573800_SNP [dm6]	A	G	2.605e^-5	0.904	INTRON bru-3
2L	17859444	2L_17859444_SNP [dm3] 2L_17859444_SNP [dm6]	G	C	2.614e^-5	0.904	INTRON CadN2
2L	17859445	2L_17859445_SNP [dm3] 2L_17859445_SNP [dm6]	G	T	2.614e^-5	0.904	INTRON CadN2
3R	22939792	3R_22939792_SNP [dm3] 3R_27114070_SNP [dm6]	A	T	2.688e^-5	0.904	NON_SYNONYMOUS_CODING CG5815
2L	6025147	2L_6025147_SNP [dm3] 2L_6025147_SNP [dm6]	A	G	2.724e^-5	0.904	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	5958156	2R_5958156_SNP [dm3] 2R_10070651_SNP [dm6]	T	C	2.738e^-5	0.904	SYNONYMOUS_CODING CG12920 DOWNSTREAM CG1371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16640464	X_16640464_SNP [dm3] X_16746431_SNP [dm6]	T	G	2.742e^-5	0.904	UPSTREAM CG9634 INTRON CG9634
3R	25638980	3R_25638980_SNP [dm3] 3R_29813258_SNP [dm6]	T	C	2.786e^-5	0.904	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25638983	3R_25638983_SNP [dm3] 3R_29813261_SNP [dm6]	C	T	2.786e^-5	0.904	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1728736	3L_1728736_SNP [dm3] 3L_1728736_SNP [dm6]	C	T	2.790e^-5	0.904	INTRON drpr	TF binding site mE1_TFBS_cnc
3R	14199556	3R_14199556_INS [dm3] 3R_18373834_INS [dm6]	A	AGCGCTTGA	2.846e^-5	0.904	UPSTREAM CR44946 DOWNSTREAM CG14310 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25754351	3R_25754351_SNP [dm3] 3R_29928629_SNP [dm6]	C	T	2.931e^-5	0.904	UTR_3_PRIME CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo
3R	25754645	3R_25754645_SNP [dm3] 3R_29928923_SNP [dm6]	A	G	2.931e^-5	0.904	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	25754683	3R_25754683_SNP [dm3] 3R_29928961_SNP [dm6]	C	T	2.931e^-5	0.904	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2R	18642200	2R_18642200_SNP [dm3] 2R_22754695_SNP [dm6]	G	A	3.038e^-5	0.904	UPSTREAM CG13526 INTRON CG42260
2R	10666304	2R_10666304_SNP [dm3] 2R_14778799_SNP [dm6]	G	A	3.140e^-5	0.904	INTRON kn	regulatory region REDfly_CRMs
2R	19039205	2R_19039205_SNP [dm3] 2R_23151682_SNP [dm6]	G	A	3.140e^-5	0.904	INTERGENIC
2R	16633575	2R_16633575_SNP [dm3] 2R_20746070_SNP [dm6]	C	T	3.146e^-5	0.904	SYNONYMOUS_CODING dpr
3L	17498404	3L_17498404_SNP [dm3] 3L_17505304_SNP [dm6]	A	G	3.183e^-5	0.904	INTRON Oatp74D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10666324	2R_10666324_SNP [dm3] 2R_14778819_SNP [dm6]	G	A	3.224e^-5	0.904	INTRON kn	regulatory region REDfly_CRMs
2R	10666329	2R_10666329_SNP [dm3] 2R_14778824_SNP [dm6]	T	A	3.224e^-5	0.904	INTRON kn	regulatory region REDfly_CRMs
2L	5596700	2L_5596700_SNP [dm3] 2L_5596700_SNP [dm6]	A	T	3.238e^-5	0.904	UPSTREAM CG18266 INTERGENIC
2L	5596720	2L_5596720_INS [dm3] 2L_5596720_INS [dm6]	T	TTTAGTAAACAAAAGAAGGA...	3.238e^-5	0.904	UPSTREAM CG18266 INTERGENIC
2L	5596734	2L_5596734_SNP [dm3] 2L_5596734_SNP [dm6]	T	C	3.238e^-5	0.904	UPSTREAM CG18266 INTERGENIC
2L	9610546	2L_9610546_SNP [dm3] 2L_9610546_SNP [dm6]	A	T	3.238e^-5	0.904	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9610549	2L_9610549_SNP [dm3] 2L_9610549_SNP [dm6]	A	G	3.238e^-5	0.904	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9610561	2L_9610561_SNP [dm3] 2L_9610561_SNP [dm6]	G	A	3.238e^-5	0.904	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9610581	2L_9610581_SNP [dm3] 2L_9610581_SNP [dm6]	T	A	3.238e^-5	0.904	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv
2L	9610660	2L_9610660_SNP [dm3] 2L_9610660_SNP [dm6]	C	A	3.238e^-5	0.904	NON_SYNONYMOUS_CODING gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26071000	3R_26071000_INS [dm3] 3R_30245278_INS [dm6]	A	AA	3.241e^-5	0.904	INTRON CG9733
2R	8735049	2R_8735049_SNP [dm3] 2R_12847544_SNP [dm6]	C	T	3.312e^-5	0.904	SYNONYMOUS_CODING antr UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486
3R	14199452	3R_14199452_SNP [dm3] 3R_18373730_SNP [dm6]	T	C	3.850e^-5	0.904	UPSTREAM gl & 1 other DOWNSTREAM CG14310 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	955068	2R_955068_SNP [dm3] 2R_5067563_SNP [dm6]	T	G	3.866e^-5	0.904	INTRON TpnC41C
3R	25754310	3R_25754310_INS [dm3] 3R_29928588_INS [dm6]	G	GCACGG	3.870e^-5	0.904	UTR_3_PRIME CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo
3L	8550683	3L_8550683_SNP [dm3] 3L_8557583_SNP [dm6]	G	A	3.997e^-5	0.904	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26484894	3R_26484894_SNP [dm3] 3R_30659172_SNP [dm6]	A	G	4.048e^-5	0.904	INTERGENIC
2L	7434822	2L_7434822_SNP [dm3] 2L_7434822_SNP [dm6]	T	A	4.083e^-5	0.904	INTERGENIC
2L	5596619	2L_5596619_SNP [dm3] 2L_5596619_SNP [dm6]	A	G	4.099e^-5	0.904	UPSTREAM CG18266 INTERGENIC
3L	4044597	3L_4044597_SNP [dm3] 3L_4044597_SNP [dm6]	G	A	4.117e^-5	0.904	INTERGENIC
3L	20253367	3L_20253367_SNP [dm3] 3L_20260267_SNP [dm6]	A	G	4.139e^-5	0.904	START_GAINED rdgC UTR_5_PRIME rdgC INTRON rdgC
2R	8548668	2R_8548668_SNP [dm3] 2R_12661163_SNP [dm6]	A	G	4.167e^-5	0.904	SYNONYMOUS_CODING nemy START_GAINED nemy UTR_5_PRIME nemy
2L	9610575	2L_9610575_SNP [dm3] 2L_9610575_SNP [dm6]	A	G	4.319e^-5	0.904	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	4.404e^-5	0.904	UPSTREAM CG34276 INTRON CG4221
2L	14366621	2L_14366621_SNP [dm3] 2L_14366621_SNP [dm6]	G	A	4.501e^-5	0.904	UTR_3_PRIME spel1 DOWNSTREAM spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	631784	2R_631784_SNP [dm3] 2R_4744279_SNP [dm6]	A	C	4.711e^-5	0.904	UPSTREAM conu INTERGENIC
3R	18535161	3R_18535161_SNP [dm3] 3R_22709439_SNP [dm6]	C	T	5.099e^-5	0.904	SYNONYMOUS_CODING CG4907
3R	18535179	3R_18535179_SNP [dm3] 3R_22709457_SNP [dm6]	G	A	5.099e^-5	0.904	SYNONYMOUS_CODING CG4907
3L	7802249	3L_7802249_SNP [dm3] 3L_7809149_SNP [dm6]	T	A	5.125e^-5	0.904	UTR_5_PRIME CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8717990	2R_8717990_SNP [dm3] 2R_12830485_SNP [dm6]	C	T	5.483e^-5	0.904	INTERGENIC
3L	2627545	3L_2627545_SNP [dm3] 3L_2627545_SNP [dm6]	T	C	5.529e^-5	0.904	INTRON Pxn
2L	14509035	2L_14509035_SNP [dm3] 2L_14509035_SNP [dm6]	G	A	5.584e^-5	0.904	DOWNSTREAM CR45693 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9887643	2L_9887643_SNP [dm3] 2L_9887643_SNP [dm6]	A	G	5.584e^-5	0.904	UPSTREAM FKBP59 DOWNSTREAM CR44701 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	9741514	2L_9741514_SNP [dm3] 2L_9741514_SNP [dm6]	A	G	5.620e^-5	0.904	INTRON Nckx30C
2L	9741716	2L_9741716_SNP [dm3] 2L_9741716_SNP [dm6]	C	A	5.620e^-5	0.904	INTRON Nckx30C
X	19010077	X_19010077_SNP [dm3] X_19116044_SNP [dm6]	G	A	5.646e^-5	0.904	INTERGENIC
X	2942366	X_2942366_SNP [dm3] X_3048333_SNP [dm6]	G	A	5.745e^-5	0.904	INTRON kirre
2R	9101228	2R_9101228_SNP [dm3] 2R_13213723_SNP [dm6]	T	A	5.897e^-5	0.904	UPSTREAM CG4627 INTRON AQP
3R	27053664	3R_27053664_SNP [dm3] 3R_31227942_SNP [dm6]	T	A	5.927e^-5	0.904	UTR_3_PRIME CG12054 INTRON CG12054	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20218252	3L_20218252_SNP [dm3] 3L_20225152_SNP [dm6]	T	C	6.025e^-5	0.904	SYNONYMOUS_CODING CG17147	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	20238971	3L_20238971_SNP [dm3] 3L_20245871_SNP [dm6]	A	T	6.025e^-5	0.904	DOWNSTREAM CG6951 INTERGENIC
3L	20246246	3L_20246246_SNP [dm3] 3L_20253146_SNP [dm6]	T	C	6.025e^-5	0.904	INTRON rdgC
X	21354103	X_21354103_SNP [dm3] X_21483076_SNP [dm6]	A	G	6.310e^-5	0.904	DOWNSTREAM CR45511 INTERGENIC
X	21354104	X_21354104_SNP [dm3] X_21483077_SNP [dm6]	A	G	6.310e^-5	0.904	DOWNSTREAM CR45511 INTERGENIC
X	21354788	X_21354788_SNP [dm3] X_21483761_SNP [dm6]	G	T	6.310e^-5	0.904	UPSTREAM CR45511 INTERGENIC
X	21354789	X_21354789_SNP [dm3] X_21483762_SNP [dm6]	G	T	6.310e^-5	0.904	UPSTREAM CR45511 INTERGENIC
X	21355276	X_21355276_SNP [dm3] X_21484249_SNP [dm6]	G	T	6.310e^-5	0.904	UPSTREAM CR45511 INTERGENIC
2L	5596729	2L_5596729_SNP [dm3] 2L_5596729_SNP [dm6]	G	A	6.344e^-5	0.904	UPSTREAM CG18266 INTERGENIC
2R	10666318	2R_10666318_SNP [dm3] 2R_14778813_SNP [dm6]	T	G	6.654e^-5	0.904	INTRON kn	regulatory region REDfly_CRMs
2R	955046	2R_955046_SNP [dm3] 2R_5067541_SNP [dm6]	C	T	6.681e^-5	0.904	INTRON TpnC41C
3L	13567277	3L_13567277_SNP [dm3] 3L_13574177_SNP [dm6]	G	T	6.754e^-5	0.904	INTRON bru-3
3L	5605330	3L_5605330_SNP [dm3] 3L_5612230_SNP [dm6]	C	T	6.912e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10580795	2R_10580795_SNP [dm3] 2R_14693290_SNP [dm6]	A	G	7.024e^-5	0.904	INTRON mspo
3R	10517764	3R_10517764_SNP [dm3] 3R_14692042_SNP [dm6]	A	C	7.094e^-5	0.904	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	5709473	2L_5709473_SNP [dm3] 2L_5709473_SNP [dm6]	T	A	7.555e^-5	0.904	UPSTREAM CG7236 INTRON CG7236
3R	25754562	3R_25754562_SNP [dm3] 3R_29928840_SNP [dm6]	A	G	7.579e^-5	0.904	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522	TF binding site mE1_TFBS_chinmo
2R	7888969	2R_7888969_SNP [dm3] 2R_12001464_SNP [dm6]	T	C	8.049e^-5	0.904	DOWNSTREAM otk INTERGENIC
2L	9740581	2L_9740581_SNP [dm3] 2L_9740581_SNP [dm6]	C	G	8.305e^-5	0.904	INTRON Nckx30C
X	5744625	X_5744625_SNP [dm3] X_5850592_SNP [dm6]	T	C	8.441e^-5	0.904	INTERGENIC
3L	3871789	3L_3871789_SNP [dm3] 3L_3871789_SNP [dm6]	T	C	8.603e^-5	0.904	INTERGENIC
2R	15682751	2R_15682751_SNP [dm3] 2R_19795246_SNP [dm6]	C	T	8.762e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17706627	3L_17706627_SNP [dm3] 3L_17713527_SNP [dm6]	G	C	8.770e^-5	0.904	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	17706730	3L_17706730_SNP [dm3] 3L_17713630_SNP [dm6]	T	G	8.770e^-5	0.904	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2L	19261568	2L_19261568_SNP [dm3] 2L_19261568_SNP [dm6]	T	G	8.928e^-5	0.904	NON_SYNONYMOUS_CODING CG31797 UPSTREAM CR44191	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25731672	3R_25731672_DEL [dm3] 3R_29905950_DEL [dm6]	GTGAC	T	8.996e^-5	0.904	INTRON CG15515
3R	25731679	3R_25731679_SNP [dm3] 3R_29905957_SNP [dm6]	G	C	8.996e^-5	0.904	INTRON CG15515
3R	25731683	3R_25731683_SNP [dm3] 3R_29905961_SNP [dm6]	G	C	8.996e^-5	0.904	INTRON CG15515
3R	25731689	3R_25731689_SNP [dm3] 3R_29905967_SNP [dm6]	C	T	8.996e^-5	0.904	SPLICE_SITE_REGION CG15515 INTRON CG15515
3L	13320488	3L_13320488_SNP [dm3] 3L_13327388_SNP [dm6]	C	T	9.101e^-5	0.904	INTERGENIC
2R	16389413	2R_16389413_SNP [dm3] 2R_20501908_SNP [dm6]	T	A	9.204e^-5	0.904	INTERGENIC	regulatory region REDfly_CRMs
3R	14918590	3R_14918590_SNP [dm3] 3R_19092868_SNP [dm6]	A	G	9.204e^-5	0.904	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11112917	2R_11112917_SNP [dm3] 2R_15225412_SNP [dm6]	A	G	9.212e^-5	0.904	DOWNSTREAM CG8079 INTRON Fs	TF binding site mE1_TFBS_cad
3R	19012651	3R_19012651_SNP [dm3] 3R_23186929_SNP [dm6]	T	A	9.474e^-5	0.904	UTR_3_PRIME cnc
X	17858480	X_17858480_SNP [dm3] X_17964447_SNP [dm6]	A	G	9.761e^-5	0.904	INTRON Sh
2R	9847030	2R_9847030_SNP [dm3] 2R_13959525_SNP [dm6]	A	T	9.908e^-5	0.904	INTRON Rpn13	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc
2R	8734284	2R_8734284_SNP [dm3] 2R_12846779_SNP [dm6]	G	T	9.960e^-5	0.904	UPSTREAM CG17575 DOWNSTREAM antr INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8734289	2R_8734289_SNP [dm3] 2R_12846784_SNP [dm6]	A	T	9.960e^-5	0.904	UPSTREAM CG17575 DOWNSTREAM antr INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8170310	3R_8170310_SNP [dm3] 3R_12344588_SNP [dm6]	A	G	9.968e^-5	0.904	INTERGENIC
2R	10662697	2R_10662697_SNP [dm3] 2R_14775192_SNP [dm6]	G	A	9.993e^-5	0.904	SYNONYMOUS_CODING kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13320620	3L_13320620_SNP [dm3] 3L_13327520_SNP [dm6]	G	A	1.007e^-4	0.904	INTERGENIC
2L	3261004	2L_3261004_SNP [dm3] 2L_3261004_SNP [dm6]	T	C	1.017e^-4	0.904	DOWNSTREAM CR45338 EXON CR45337
3L	6146292	3L_6146292_SNP [dm3] 3L_6153192_SNP [dm6]	C	G	1.018e^-4	0.904	UPSTREAM Acp65Aa INTERGENIC
2L	9605261	2L_9605261_SNP [dm3] 2L_9605261_SNP [dm6]	A	G	1.043e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
3L	11134034	3L_11134034_SNP [dm3] 3L_11140934_SNP [dm6]	C	T	1.062e^-4	0.904	INTRON CG32082
3L	8062119	3L_8062119_SNP [dm3] 3L_8069019_SNP [dm6]	C	G	1.099e^-4	0.904	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
3R	5073924	3R_5073924_SNP [dm3] 3R_9248202_SNP [dm6]	A	G	1.116e^-4	0.904	NON_SYNONYMOUS_CODING CG8420 INTRON CG8420	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8880090	2L_8880090_SNP [dm3] 2L_8880090_SNP [dm6]	T	A	1.118e^-4	0.904	INTERGENIC
2L	8880094	2L_8880094_SNP [dm3] 2L_8880094_SNP [dm6]	C	T	1.118e^-4	0.904	INTERGENIC
2L	8880102	2L_8880102_SNP [dm3] 2L_8880102_SNP [dm6]	C	G	1.118e^-4	0.904	INTERGENIC
2L	8880103	2L_8880103_DEL [dm3] 2L_8880103_DEL [dm6]	GTCTAAGACTG...	G	1.118e^-4	0.904	INTERGENIC
2L	8880123	2L_8880123_DEL [dm3] 2L_8880123_DEL [dm6]	TTCTGACTTTTAATA...	T	1.118e^-4	0.904	INTERGENIC
X	1608450	X_1608450_SNP [dm3] X_1714417_SNP [dm6]	C	G	1.118e^-4	0.904	INTERGENIC
X	1610485	X_1610485_SNP [dm3] X_1716452_SNP [dm6]	A	G	1.118e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1610654	X_1610654_SNP [dm3] X_1716621_SNP [dm6]	A	G	1.118e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1610994	X_1610994_SNP [dm3] X_1716961_SNP [dm6]	G	A	1.118e^-4	0.904	INTERGENIC
X	1611231	X_1611231_SNP [dm3] X_1717198_SNP [dm6]	G	A	1.118e^-4	0.904	INTERGENIC
X	1611948	X_1611948_SNP [dm3] X_1717915_SNP [dm6]	G	A	1.118e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1611964	X_1611964_SNP [dm3] X_1717931_SNP [dm6]	G	A	1.118e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1613065	X_1613065_SNP [dm3] X_1719032_SNP [dm6]	G	A	1.118e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19882751	X_19882751_SNP [dm3] X_19988718_SNP [dm6]	G	T	1.118e^-4	0.904	INTERGENIC
X	6806475	X_6806475_SNP [dm3] X_6912442_SNP [dm6]	G	T	1.118e^-4	0.904	INTRON CG14431
X	6806476	X_6806476_SNP [dm3] X_6912443_SNP [dm6]	C	T	1.118e^-4	0.904	INTRON CG14431
3R	13409835	3R_13409835_DEL [dm3] 3R_17584113_DEL [dm6]	AA	A	1.121e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	2940920	X_2940920_SNP [dm3] X_3046887_SNP [dm6]	T	C	1.133e^-4	0.904	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14199543	3R_14199543_SNP [dm3] 3R_18373821_SNP [dm6]	G	A	1.134e^-4	0.904	UPSTREAM CR44946 DOWNSTREAM CG14310 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14199547	3R_14199547_INS [dm3] 3R_18373825_INS [dm6]	G	GTGTAAAG	1.134e^-4	0.904	UPSTREAM CR44946 DOWNSTREAM CG14310 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4760263	2R_4760263_SNP [dm3] 2R_8872758_SNP [dm6]	G	A	1.142e^-4	0.904	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11151180	3L_11151180_SNP [dm3] 3L_11158080_SNP [dm6]	A	C	1.172e^-4	0.904	INTRON CG32082	TF binding site mE1_TFBS_inv
2R	6340056	2R_6340056_SNP [dm3] 2R_10452551_SNP [dm6]	A	G	1.200e^-4	0.904	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3R	26482692	3R_26482692_SNP [dm3] 3R_30656970_SNP [dm6]	G	A	1.213e^-4	0.904	INTERGENIC
3L	1024499	3L_1024499_SNP [dm3] 3L_1024499_SNP [dm6]	G	A	1.266e^-4	0.904	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1024502	3L_1024502_SNP [dm3] 3L_1024502_SNP [dm6]	C	T	1.266e^-4	0.904	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9136890	3R_9136890_SNP [dm3] 3R_13311168_SNP [dm6]	T	C	1.279e^-4	0.904	SPLICE_SITE_REGION CG32473 INTRON CG32473
2L	9740047	2L_9740047_SNP [dm3] 2L_9740047_SNP [dm6]	T	G	1.281e^-4	0.904	INTRON Nckx30C
2L	10059877	2L_10059877_INS [dm3] 2L_10059877_INS [dm6]	T	TT	1.281e^-4	0.904	UTR_3_PRIME Pen UPSTREAM Spn31A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1610444	X_1610444_SNP [dm3] X_1716411_SNP [dm6]	C	T	1.304e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21174602	X_21174602_SNP [dm3] X_21303575_SNP [dm6]	T	C	1.318e^-4	0.904	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3R	21448619	3R_21448619_INS [dm3] 3R_25622897_INS [dm6]	A	AT	1.322e^-4	0.904	SPLICE_SITE_REGION Npl4 INTRON Npl4	TF binding site mE1_TFBS_sens
3R	21448639	3R_21448639_SNP [dm3] 3R_25622917_SNP [dm6]	T	A	1.322e^-4	0.904	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	21448650	3R_21448650_SNP [dm3] 3R_25622928_SNP [dm6]	A	C	1.322e^-4	0.904	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	21448653	3R_21448653_SNP [dm3] 3R_25622931_SNP [dm6]	A	T	1.322e^-4	0.904	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	21448656	3R_21448656_SNP [dm3] 3R_25622934_SNP [dm6]	T	A	1.322e^-4	0.904	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	21448657	3R_21448657_SNP [dm3] 3R_25622935_SNP [dm6]	G	T	1.322e^-4	0.904	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	13976541	3R_13976541_SNP [dm3] 3R_18150819_SNP [dm6]	A	T	1.337e^-4	0.904	INTERGENIC
X	2942300	X_2942300_SNP [dm3] X_3048267_SNP [dm6]	T	G	1.344e^-4	0.904	INTRON kirre
3L	7420849	3L_7420849_SNP [dm3] 3L_7427749_SNP [dm6]	A	T	1.363e^-4	0.904	INTRON CG42458
3L	7420860	3L_7420860_SNP [dm3] 3L_7427760_SNP [dm6]	G	A	1.363e^-4	0.904	INTRON CG42458
3L	7420876	3L_7420876_SNP [dm3] 3L_7427776_SNP [dm6]	A	G	1.363e^-4	0.904	INTRON CG42458
3L	20246265	3L_20246265_SNP [dm3] 3L_20253165_SNP [dm6]	T	G	1.389e^-4	0.904	INTRON rdgC
3L	20253073	3L_20253073_SNP [dm3] 3L_20259973_SNP [dm6]	A	T	1.389e^-4	0.904	UPSTREAM rdgC INTRON rdgC
X	18693129	X_18693129_SNP [dm3] X_18799096_SNP [dm6]	T	C	1.409e^-4	0.904	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15385121	3L_15385121_SNP [dm3] 3L_15392021_SNP [dm6]	C	T	1.411e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9732926	3L_9732926_SNP [dm3] 3L_9739826_SNP [dm6]	T	A	1.454e^-4	0.904	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732927	3L_9732927_SNP [dm3] 3L_9739827_SNP [dm6]	T	G	1.454e^-4	0.904	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732929	3L_9732929_INS [dm3] 3L_9739829_INS [dm6]	A	AAACTTCTAACACTT...	1.454e^-4	0.904	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732935	3L_9732935_SNP [dm3] 3L_9739835_SNP [dm6]	A	G	1.454e^-4	0.904	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3R	23503061	3R_23503061_SNP [dm3] 3R_27677339_SNP [dm6]	T	C	1.454e^-4	0.904	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	23503069	3R_23503069_SNP [dm3] 3R_27677347_SNP [dm6]	C	T	1.454e^-4	0.904	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	23503101	3R_23503101_SNP [dm3] 3R_27677379_SNP [dm6]	T	A	1.454e^-4	0.904	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	20412890	X_20412890_SNP [dm3] X_20541863_SNP [dm6]	C	T	1.461e^-4	0.904	SYNONYMOUS_CODING RunxB
2R	18642208	2R_18642208_SNP [dm3] 2R_22754703_SNP [dm6]	C	A	1.474e^-4	0.904	UPSTREAM CG13526 INTRON CG42260
2L	8877761	2L_8877761_SNP [dm3] 2L_8877761_SNP [dm6]	G	T	1.476e^-4	0.904	INTERGENIC
3R	18454421	3R_18454421_SNP [dm3] 3R_22628699_SNP [dm6]	A	G	1.481e^-4	0.904	UPSTREAM CR43475 & 1 other INTRON loco	regulatory region REDfly_CRMs
3R	20708847	3R_20708847_SNP [dm3] 3R_24883125_SNP [dm6]	A	G	1.487e^-4	0.904	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19311716	3L_19311716_SNP [dm3] 3L_19318616_SNP [dm6]	G	A	1.487e^-4	0.904	INTRON pip	TF binding site mE1_TFBS_cad
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	1.489e^-4	0.904	INTERGENIC
3R	23503046	3R_23503046_SNP [dm3] 3R_27677324_SNP [dm6]	A	T	1.489e^-4	0.904	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	22232497	3R_22232497_SNP [dm3] 3R_26406775_SNP [dm6]	T	C	1.506e^-4	0.904	INTERGENIC
2R	10517201	2R_10517201_SNP [dm3] 2R_14629696_SNP [dm6]	T	G	1.506e^-4	0.904	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9787813	2R_9787813_SNP [dm3] 2R_13900308_SNP [dm6]	G	A	1.506e^-4	0.904	INTRON shot
3L	1373780	3L_1373780_SNP [dm3] 3L_1373780_SNP [dm6]	T	C	1.506e^-4	0.904	INTRON Ptp61F & 1 other
X	1614560	X_1614560_SNP [dm3] X_1720527_SNP [dm6]	C	A	1.506e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1614565	X_1614565_SNP [dm3] X_1720532_SNP [dm6]	C	T	1.506e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17860538	X_17860538_SNP [dm3] X_17966505_SNP [dm6]	T	C	1.512e^-4	0.904	UTR_5_PRIME Sh INTRON Sh
2L	16893618	2L_16893618_SNP [dm3] 2L_16893618_SNP [dm6]	A	G	1.529e^-4	0.904	SYNONYMOUS_CODING tweek
3R	10914917	3R_10914917_SNP [dm3] 3R_15089195_SNP [dm6]	T	C	1.544e^-4	0.904	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	7537122	2L_7537122_SNP [dm3] 2L_7537122_SNP [dm6]	A	G	1.545e^-4	0.904	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8172382	X_8172382_INS [dm3] X_8278349_INS [dm6]	A	AA	1.545e^-4	0.904	UTR_3_PRIME nAChRalpha3
X	7660689	X_7660689_SNP [dm3] X_7766656_SNP [dm6]	T	A	1.549e^-4	0.904	NON_SYNONYMOUS_CODING Ir7a	TF binding site BDTNP1_TFBS_twi
X	19010079	X_19010079_SNP [dm3] X_19116046_SNP [dm6]	C	G	1.567e^-4	0.904	INTERGENIC
2R	632424	2R_632424_SNP [dm3] 2R_4744919_SNP [dm6]	A	G	1.574e^-4	0.904	INTRON conu	transposable element FlyBase
2R	17290633	2R_17290633_SNP [dm3] 2R_21403128_SNP [dm6]	A	T	1.580e^-4	0.904	INTRON Sdc
3L	15023652	3L_15023652_SNP [dm3] 3L_15030552_SNP [dm6]	A	G	1.629e^-4	0.904	INTRON Sytbeta
3R	21494943	3R_21494943_SNP [dm3] 3R_25669221_SNP [dm6]	C	T	1.641e^-4	0.904	SYNONYMOUS_CODING Lgr3
X	8172371	X_8172371_SNP [dm3] X_8278338_SNP [dm6]	T	C	1.645e^-4	0.904	UTR_3_PRIME nAChRalpha3
2R	14559503	2R_14559503_SNP [dm3] 2R_18671998_SNP [dm6]	A	C	1.649e^-4	0.904	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	1.672e^-4	0.904	INTRON Cip4
X	6806456	X_6806456_SNP [dm3] X_6912423_SNP [dm6]	A	G	1.717e^-4	0.904	INTRON CG14431
2R	12125167	2R_12125167_SNP [dm3] 2R_16237662_SNP [dm6]	A	G	1.717e^-4	0.904	DOWNSTREAM krimp & 1 other INTERGENIC
X	21355478	X_21355478_SNP [dm3] X_21484451_SNP [dm6]	G	T	1.731e^-4	0.904	UPSTREAM CR45511 INTERGENIC
2L	10148891	2L_10148891_SNP [dm3] 2L_10148891_SNP [dm6]	G	A	1.740e^-4	0.904	INTRON CG44153 & 1 other
2R	15682757	2R_15682757_SNP [dm3] 2R_19795252_SNP [dm6]	A	G	1.742e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25347183	3R_25347183_SNP [dm3] 3R_29521461_SNP [dm6]	C	T	1.742e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5075889	3L_5075889_SNP [dm3] 3L_5075889_SNP [dm6]	A	T	1.743e^-4	0.904	INTRON Con
3R	16961882	3R_16961882_SNP [dm3] 3R_21136160_SNP [dm6]	A	G	1.746e^-4	0.904	SYNONYMOUS_CODING Ubpy UPSTREAM Ubpy
2R	19889936	2R_19889936_SNP [dm3] 2R_24002413_SNP [dm6]	T	A	1.748e^-4	0.904	INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19890537	2R_19890537_SNP [dm3] 2R_24003014_SNP [dm6]	A	G	1.748e^-4	0.904	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19890540	2R_19890540_SNP [dm3] 2R_24003017_SNP [dm6]	A	T	1.748e^-4	0.904	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13963900	3R_13963900_DEL [dm3] 3R_18138178_DEL [dm6]	CTAGAATAGCCAC...	C	1.785e^-4	0.904	INTERGENIC
2L	8789588	2L_8789588_INS [dm3] 2L_8789588_INS [dm6]	A	AAA	1.850e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8789595	2L_8789595_SNP [dm3] 2L_8789595_SNP [dm6]	C	T	1.850e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17333355	3R_17333355_DEL [dm3] 3R_21507633_DEL [dm6]	TTATTATT	T	1.856e^-4	0.904	INTRON C15	TF binding site BDTNP1_TFBS_da
3R	10914078	3R_10914078_SNP [dm3] 3R_15088356_SNP [dm6]	A	T	1.860e^-4	0.904	INTRON CG6966
3R	18599391	3R_18599391_SNP [dm3] 3R_22773669_SNP [dm6]	T	C	1.862e^-4	0.904	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	22764367	3R_22764367_SNP [dm3] 3R_26938645_SNP [dm6]	C	A	1.862e^-4	0.904	INTRON sda
2L	1917976	2L_1917976_SNP [dm3] 2L_1917976_SNP [dm6]	T	A	1.871e^-4	0.904	INTRON CG7337
2L	1917993	2L_1917993_SNP [dm3] 2L_1917993_SNP [dm6]	C	A	1.871e^-4	0.904	INTRON CG7337
3L	20241804	3L_20241804_SNP [dm3] 3L_20248704_SNP [dm6]	A	G	1.877e^-4	0.904	UTR_5_PRIME rdgC INTRON rdgC	TF binding site BDTNP1_TFBS_dl
2L	11023036	2L_11023036_SNP [dm3] 2L_11023036_SNP [dm6]	A	T	1.899e^-4	0.904	INTRON Samuel
2R	18642210	2R_18642210_SNP [dm3] 2R_22754705_SNP [dm6]	G	C	1.936e^-4	0.904	UPSTREAM CG13526 INTRON CG42260
3L	9213739	3L_9213739_SNP [dm3] 3L_9220639_SNP [dm6]	G	A	1.970e^-4	0.904	INTERGENIC
X	21354704	X_21354704_DEL [dm3] X_21483677_DEL [dm6]	TCGGAT	T	1.977e^-4	0.904	UPSTREAM CR45511 INTERGENIC
X	21354722	X_21354722_SNP [dm3] X_21483695_SNP [dm6]	G	C	1.977e^-4	0.904	UPSTREAM CR45511 INTERGENIC
3L	22722132	3L_22722132_SNP [dm3] 3L_22729032_SNP [dm6]	A	C	1.979e^-4	0.904	NON_SYNONYMOUS_CODING CG11367 UPSTREAM CG32454	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22722140	3L_22722140_SNP [dm3] 3L_22729040_SNP [dm6]	A	C	1.979e^-4	0.904	SYNONYMOUS_CODING CG11367 UPSTREAM CG32454	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17986615	3R_17986615_SNP [dm3] 3R_22160893_SNP [dm6]	A	G	2.019e^-4	0.904	INTRON SKIP	TF binding site mE1_TFBS_Kr
3R	17986756	3R_17986756_SNP [dm3] 3R_22161034_SNP [dm6]	A	T	2.019e^-4	0.904	INTRON SKIP
3L	15324705	3L_15324705_SNP [dm3] 3L_15331605_SNP [dm6]	A	G	2.033e^-4	0.904	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19197261	3L_19197261_SNP [dm3] 3L_19204161_SNP [dm6]	T	C	2.087e^-4	0.904	INTRON fz2
2L	9741197	2L_9741197_SNP [dm3] 2L_9741197_SNP [dm6]	T	C	2.089e^-4	0.904	INTRON Nckx30C
3L	22401208	3L_22401208_SNP [dm3] 3L_22408108_SNP [dm6]	G	A	2.089e^-4	0.904	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	9302229	2L_9302229_SNP [dm3] 2L_9302229_SNP [dm6]	C	T	2.128e^-4	0.904	UTR_3_PRIME Ggamma30A
3L	1137042	3L_1137042_SNP [dm3] 3L_1137042_SNP [dm6]	T	A	2.137e^-4	0.904	INTERGENIC
3L	3174508	3L_3174508_SNP [dm3] 3L_3174508_SNP [dm6]	T	C	2.137e^-4	0.904	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3174550	3L_3174550_SNP [dm3] 3L_3174550_SNP [dm6]	T	C	2.137e^-4	0.904	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14348826	X_14348826_SNP [dm3] X_14454793_SNP [dm6]	G	A	2.137e^-4	0.904	INTRON dpr8
X	14348839	X_14348839_SNP [dm3] X_14454806_SNP [dm6]	C	T	2.137e^-4	0.904	INTRON dpr8
X	14348858	X_14348858_SNP [dm3] X_14454825_SNP [dm6]	A	T	2.137e^-4	0.904	INTRON dpr8
X	8285936	X_8285936_SNP [dm3] X_8391903_SNP [dm6]	A	G	2.137e^-4	0.904	INTERGENIC
2R	955058	2R_955058_SNP [dm3] 2R_5067553_SNP [dm6]	C	A	2.223e^-4	0.904	INTRON TpnC41C
2L	15834014	2L_15834014_SNP [dm3] 2L_15834014_SNP [dm6]	T	C	2.227e^-4	0.904	DOWNSTREAM CR45368 & 1 other INTERGENIC
3L	9733349	3L_9733349_SNP [dm3] 3L_9740249_SNP [dm6]	C	T	2.228e^-4	0.904	UPSTREAM CG42268 INTRON CG42268
X	8286362	X_8286362_SNP [dm3] X_8392329_SNP [dm6]	T	A	2.228e^-4	0.904	INTERGENIC
2L	5596670	2L_5596670_SNP [dm3] 2L_5596670_SNP [dm6]	G	A	2.234e^-4	0.904	UPSTREAM CG18266 INTERGENIC
X	14475142	X_14475142_DEL [dm3] X_14581109_DEL [dm6]	TG	T	2.264e^-4	0.904	INTRON CG14414	TF binding site BDTNP1_TFBS_dl
3R	5073930	3R_5073930_SNP [dm3] 3R_9248208_SNP [dm6]	A	G	2.281e^-4	0.904	NON_SYNONYMOUS_CODING CG8420 INTRON CG8420	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5073959	3R_5073959_SNP [dm3] 3R_9248237_SNP [dm6]	G	A	2.281e^-4	0.904	NON_SYNONYMOUS_CODING CG8420 INTRON CG8420	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	20848944	3L_20848944_SNP [dm3] 3L_20855844_SNP [dm6]	C	A	2.288e^-4	0.904	INTRON CG32432
X	11679843	X_11679843_SNP [dm3] X_11785810_SNP [dm6]	G	T	2.290e^-4	0.904	INTERGENIC
X	2940906	X_2940906_DEL [dm3] X_3046873_DEL [dm6]	AGTAA	A	2.297e^-4	0.904	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9735265	3L_9735265_SNP [dm3] 3L_9742165_SNP [dm6]	C	T	2.298e^-4	0.904	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9735268	3L_9735268_SNP [dm3] 3L_9742168_SNP [dm6]	G	A	2.298e^-4	0.904	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25690732	3R_25690732_SNP [dm3] 3R_29865010_SNP [dm6]	T	A	2.298e^-4	0.904	INTRON Zip99C
3R	25690733	3R_25690733_SNP [dm3] 3R_29865011_SNP [dm6]	G	A	2.298e^-4	0.904	INTRON Zip99C
2L	15495150	2L_15495150_SNP [dm3] 2L_15495150_SNP [dm6]	G	T	2.328e^-4	0.904	INTERGENIC
2L	15495168	2L_15495168_SNP [dm3] 2L_15495168_SNP [dm6]	G	C	2.328e^-4	0.904	INTERGENIC
3R	16167927	3R_16167927_SNP [dm3] 3R_20342205_SNP [dm6]	T	A	2.336e^-4	0.904	INTRON Ir92a
2L	9712530	2L_9712530_SNP [dm3] 2L_9712530_SNP [dm6]	C	A	2.368e^-4	0.904	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C
2L	10346933	2L_10346933_SNP [dm3] 2L_10346933_SNP [dm6]	T	C	2.411e^-4	0.904	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367
2L	7430951	2L_7430951_SNP [dm3] 2L_7430951_SNP [dm6]	C	G	2.467e^-4	0.904	DOWNSTREAM CG5261 INTRON CG5958
3R	11514946	3R_11514946_SNP [dm3] 3R_15689224_SNP [dm6]	G	A	2.467e^-4	0.904	UTR_3_PRIME pxb DOWNSTREAM pxb
2R	17001642	2R_17001642_SNP [dm3] 2R_21114137_SNP [dm6]	G	A	2.490e^-4	0.904	INTRON ktub
2R	10675901	2R_10675901_SNP [dm3] 2R_14788396_SNP [dm6]	G	A	2.518e^-4	0.904	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19589472	3R_19589472_SNP [dm3] 3R_23763750_SNP [dm6]	C	A	2.518e^-4	0.904	UPSTREAM Lsd-1 & 1 other INTERGENIC
3R	19589473	3R_19589473_SNP [dm3] 3R_23763751_SNP [dm6]	T	C	2.518e^-4	0.904	UPSTREAM Lsd-1 & 1 other INTERGENIC
3R	18681174	3R_18681174_SNP [dm3] 3R_22855452_SNP [dm6]	A	G	2.519e^-4	0.904	INTERGENIC
2R	7887972	2R_7887972_SNP [dm3] 2R_12000467_SNP [dm6]	A	C	2.526e^-4	0.904	INTERGENIC
2L	11243232	2L_11243232_SNP [dm3] 2L_11243232_SNP [dm6]	T	G	2.545e^-4	0.904	INTRON ab	TF binding site BDTNP1_TFBS_twi
3L	8071589	3L_8071589_SNP [dm3] 3L_8078489_SNP [dm6]	A	G	2.552e^-4	0.904	INTRON Ect4	TF binding site mE1_TFBS_Kr
2L	5933122	2L_5933122_SNP [dm3] 2L_5933122_SNP [dm6]	C	T	2.571e^-4	0.904	INTRON dsf
3L	8184954	3L_8184954_SNP [dm3] 3L_8191854_SNP [dm6]	G	T	2.586e^-4	0.904	SYNONYMOUS_CODING CG7387 DOWNSTREAM Atg18a INTRON MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14147838	2R_14147838_SNP [dm3] 2R_18260333_SNP [dm6]	C	T	2.608e^-4	0.904	INTERGENIC
2L	8895708	2L_8895708_SNP [dm3] 2L_8895708_SNP [dm6]	A	G	2.609e^-4	0.904	INTERGENIC
3R	19967154	3R_19967154_SNP [dm3] 3R_24141432_SNP [dm6]	A	G	2.616e^-4	0.904	UTR_5_PRIME Kal1 DOWNSTREAM Npc2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18162907	3R_18162907_SNP [dm3] 3R_22337185_SNP [dm6]	T	A	2.618e^-4	0.904	NON_SYNONYMOUS_CODING CG5388
3R	18162919	3R_18162919_SNP [dm3] 3R_22337197_SNP [dm6]	G	C	2.618e^-4	0.904	SYNONYMOUS_CODING CG5388
3L	7893876	3L_7893876_SNP [dm3] 3L_7900776_SNP [dm6]	G	A	2.626e^-4	0.904	SYNONYMOUS_CODING pbl INTRON pbl
3R	20962777	3R_20962777_DEL [dm3] 3R_25137055_DEL [dm6]	TACAT	A	2.632e^-4	0.904	DOWNSTREAM Bili INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17432804	2L_17432804_SNP [dm3] 2L_17432804_SNP [dm6]	C	T	2.647e^-4	0.904	INTRON Dif
3R	18932535	3R_18932535_SNP [dm3] 3R_23106813_SNP [dm6]	A	G	2.659e^-4	0.904	INTRON CG13830
3R	24663466	3R_24663466_SNP [dm3] 3R_28837744_SNP [dm6]	A	C	2.664e^-4	0.904	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8789492	2L_8789492_SNP [dm3] 2L_8789492_SNP [dm6]	A	C	2.668e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8789493	2L_8789493_SNP [dm3] 2L_8789493_SNP [dm6]	C	A	2.668e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8789503	2L_8789503_SNP [dm3] 2L_8789503_SNP [dm6]	C	T	2.668e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8789543	2L_8789543_SNP [dm3] 2L_8789543_SNP [dm6]	G	A	2.668e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3685443	3L_3685443_SNP [dm3] 3L_3685443_SNP [dm6]	T	C	2.670e^-4	0.904	INTERGENIC
3L	2386891	3L_2386891_SNP [dm3] 3L_2386891_SNP [dm6]	T	C	2.675e^-4	0.904	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9733102	3L_9733102_SNP [dm3] 3L_9740002_SNP [dm6]	T	G	2.696e^-4	0.904	UPSTREAM CG42268 INTRON CG42268
3L	9733192	3L_9733192_SNP [dm3] 3L_9740092_SNP [dm6]	G	T	2.696e^-4	0.904	UPSTREAM CG42268 INTRON CG42268
3R	23503015	3R_23503015_SNP [dm3] 3R_27677293_SNP [dm6]	T	G	2.696e^-4	0.904	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	12848432	X_12848432_SNP [dm3] X_12954399_SNP [dm6]	C	T	2.715e^-4	0.904	SYNONYMOUS_CODING hec
X	12848363	X_12848363_SNP [dm3] X_12954330_SNP [dm6]	G	A	2.739e^-4	0.904	INTRON hec
3R	12568673	3R_12568673_INS [dm3] 3R_16742951_INS [dm6]	A	ATTAATA	2.748e^-4	0.904	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	11791333	3R_11791333_SNP [dm3] 3R_15965611_SNP [dm6]	G	C	2.785e^-4	0.904	NON_SYNONYMOUS_CODING Rbf2 UPSTREAM CG32856 DOWNSTREAM CG5516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	12677797	2R_12677797_SNP [dm3] 2R_16790292_SNP [dm6]	C	T	2.797e^-4	0.904	INTRON CG5522
2R	3614948	2R_3614948_SNP [dm3] 2R_7727443_SNP [dm6]	C	T	2.819e^-4	0.904	UTR_5_PRIME CG18812 INTRON CG18812
3R	17333352	3R_17333352_SNP [dm3] 3R_21507630_SNP [dm6]	T	G	2.825e^-4	0.904	INTRON C15	TF binding site BDTNP1_TFBS_da
3L	7813783	3L_7813783_SNP [dm3] 3L_7820683_SNP [dm6]	A	G	2.830e^-4	0.904	INTRON Pdp1
2R	16389454	2R_16389454_SNP [dm3] 2R_20501949_SNP [dm6]	C	T	2.859e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
2L	9928636	2L_9928636_SNP [dm3] 2L_9928636_SNP [dm6]	T	A	2.869e^-4	0.904	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
3L	11408684	3L_11408684_SNP [dm3] 3L_11415584_SNP [dm6]	T	C	2.897e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12253891	2L_12253891_INS [dm3] 2L_12253891_INS [dm6]	A	AA	2.915e^-4	0.904	INTRON aret
2L	14363114	2L_14363114_SNP [dm3] 2L_14363114_SNP [dm6]	C	T	2.924e^-4	0.904	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	14363173	2L_14363173_SNP [dm3] 2L_14363173_SNP [dm6]	A	G	2.924e^-4	0.904	INTRON spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14363266	2L_14363266_SNP [dm3] 2L_14363266_SNP [dm6]	A	C	2.924e^-4	0.904	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17049069	2L_17049069_SNP [dm3] 2L_17049069_SNP [dm6]	T	C	2.924e^-4	0.904	UPSTREAM CG15136 INTERGENIC
3L	17792524	3L_17792524_SNP [dm3] 3L_17799424_SNP [dm6]	G	A	2.924e^-4	0.904	SYNONYMOUS_CODING NUCB1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17797884	3L_17797884_SNP [dm3] 3L_17804784_SNP [dm6]	C	A	2.924e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3L	17797899	3L_17797899_SNP [dm3] 3L_17804799_SNP [dm6]	A	T	2.924e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3L	17797913	3L_17797913_SNP [dm3] 3L_17804813_SNP [dm6]	T	A	2.924e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3L	17797937	3L_17797937_SNP [dm3] 3L_17804837_SNP [dm6]	T	G	2.924e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17797968	3L_17797968_SNP [dm3] 3L_17804868_SNP [dm6]	C	A	2.924e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17798049	3L_17798049_SNP [dm3] 3L_17804949_SNP [dm6]	A	C	2.924e^-4	0.904	SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17801650	3L_17801650_SNP [dm3] 3L_17808550_SNP [dm6]	T	G	2.924e^-4	0.904	SYNONYMOUS_CODING CG32191 DOWNSTREAM cln3
X	19646194	X_19646194_SNP [dm3] X_19752161_SNP [dm6]	T	C	2.936e^-4	0.904	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17600808	2L_17600808_SNP [dm3] 2L_17600808_SNP [dm6]	G	C	2.983e^-4	0.904	INTRON Sytalpha
X	17067815	X_17067815_SNP [dm3] X_17173782_SNP [dm6]	A	G	2.984e^-4	0.904	INTRON baz
3L	13320516	3L_13320516_SNP [dm3] 3L_13327416_SNP [dm6]	C	T	3.007e^-4	0.904	INTERGENIC
3L	13320524	3L_13320524_SNP [dm3] 3L_13327424_SNP [dm6]	G	T	3.007e^-4	0.904	INTERGENIC
3L	13320527	3L_13320527_SNP [dm3] 3L_13327427_SNP [dm6]	A	G	3.007e^-4	0.904	INTERGENIC
3L	13320528	3L_13320528_SNP [dm3] 3L_13327428_SNP [dm6]	T	C	3.007e^-4	0.904	INTERGENIC
3L	13320536	3L_13320536_SNP [dm3] 3L_13327436_SNP [dm6]	A	T	3.007e^-4	0.904	INTERGENIC
3L	13320545	3L_13320545_SNP [dm3] 3L_13327445_SNP [dm6]	T	C	3.007e^-4	0.904	INTERGENIC
3L	13320546	3L_13320546_SNP [dm3] 3L_13327446_SNP [dm6]	T	C	3.007e^-4	0.904	INTERGENIC
3L	13320550	3L_13320550_SNP [dm3] 3L_13327450_SNP [dm6]	T	A	3.007e^-4	0.904	INTERGENIC
3R	18535494	3R_18535494_SNP [dm3] 3R_22709772_SNP [dm6]	T	C	3.047e^-4	0.904	SYNONYMOUS_CODING CG4907
3R	26665852	3R_26665852_SNP [dm3] 3R_30840130_SNP [dm6]	T	C	3.047e^-4	0.904	INTRON CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9453212	X_9453212_SNP [dm3] X_9559179_SNP [dm6]	C	T	3.062e^-4	0.904	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9453218	X_9453218_SNP [dm3] X_9559185_SNP [dm6]	A	G	3.062e^-4	0.904	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10338507	X_10338507_SNP [dm3] X_10444474_SNP [dm6]	T	G	3.073e^-4	0.904	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3R	17986708	3R_17986708_SNP [dm3] 3R_22160986_SNP [dm6]	T	G	3.080e^-4	0.904	INTRON SKIP
2L	9744279	2L_9744279_SNP [dm3] 2L_9744279_SNP [dm6]	T	A	3.096e^-4	0.904	INTRON Nckx30C
3R	5416643	3R_5416643_SNP [dm3] 3R_9590921_SNP [dm6]	G	C	3.097e^-4	0.904	NON_SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19776122	3R_19776122_SNP [dm3] 3R_23950400_SNP [dm6]	C	T	3.098e^-4	0.904	INTERGENIC
2R	10843449	2R_10843449_SNP [dm3] 2R_14955944_SNP [dm6]	A	G	3.115e^-4	0.904	INTRON aPKC
3R	5042016	3R_5042016_SNP [dm3] 3R_9216294_SNP [dm6]	A	C	3.116e^-4	0.904	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10162278	3R_10162278_SNP [dm3] 3R_14336556_SNP [dm6]	C	T	3.118e^-4	0.904	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
2L	7015479	2L_7015479_SNP [dm3] 2L_7015479_SNP [dm6]	A	G	3.138e^-4	0.904	SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13093407	3L_13093407_SNP [dm3] 3L_13100307_SNP [dm6]	C	T	3.150e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13093408	3L_13093408_SNP [dm3] 3L_13100308_SNP [dm6]	A	T	3.150e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26071022	3R_26071022_SNP [dm3] 3R_30245300_SNP [dm6]	T	A	3.179e^-4	0.904	INTRON CG9733
2R	16030969	2R_16030969_SNP [dm3] 2R_20143464_SNP [dm6]	A	C	3.196e^-4	0.904	INTERGENIC
2L	10460009	2L_10460009_SNP [dm3] 2L_10460009_SNP [dm6]	C	T	3.234e^-4	0.904	SYNONYMOUS_CODING LM408
2L	10460021	2L_10460021_SNP [dm3] 2L_10460021_SNP [dm6]	T	A	3.234e^-4	0.904	SYNONYMOUS_CODING LM408
3L	11539903	3L_11539903_SNP [dm3] 3L_11546803_SNP [dm6]	C	T	3.235e^-4	0.904	INTRON Mob2
2L	17782781	2L_17782781_INS [dm3] 2L_17782781_INS [dm6]	A	AAA	3.237e^-4	0.904	INTERGENIC
2R	5943561	2R_5943561_SNP [dm3] 2R_10056056_SNP [dm6]	A	C	3.244e^-4	0.904	UPSTREAM magu INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7794317	3R_7794317_SNP [dm3] 3R_11968595_SNP [dm6]	T	G	3.247e^-4	0.904	UPSTREAM CG12213 INTRON GC1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19092973	2R_19092973_DEL [dm3] 2R_23205450_DEL [dm6]	TT	T	3.255e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8613576	2R_8613576_SNP [dm3] 2R_12726071_SNP [dm6]	C	T	3.256e^-4	0.904	INTRON CG42663
3L	9131884	3L_9131884_SNP [dm3] 3L_9138784_SNP [dm6]	G	A	3.257e^-4	0.904	SYNONYMOUS_CODING nwk
3R	22764518	3R_22764518_SNP [dm3] 3R_26938796_SNP [dm6]	G	A	3.258e^-4	0.904	INTRON sda
2L	9556600	2L_9556600_SNP [dm3] 2L_9556600_SNP [dm6]	T	A	3.274e^-4	0.904	INTRON jp
2L	15815512	2L_15815512_SNP [dm3] 2L_15815512_SNP [dm6]	G	A	3.280e^-4	0.904	INTERGENIC
2L	6512549	2L_6512549_SNP [dm3] 2L_6512549_SNP [dm6]	T	A	3.284e^-4	0.904	INTRON CG31637
3L	7417871	3L_7417871_SNP [dm3] 3L_7424771_SNP [dm6]	C	T	3.284e^-4	0.904	INTRON CG42458
X	21174703	X_21174703_SNP [dm3] X_21303676_SNP [dm6]	A	G	3.296e^-4	0.904	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2R	800788	2R_800788_SNP [dm3] 2R_4913283_SNP [dm6]	G	T	3.306e^-4	0.904	INTERGENIC	transposable element FlyBase
3L	7420889	3L_7420889_SNP [dm3] 3L_7427789_SNP [dm6]	A	T	3.322e^-4	0.904	INTRON CG42458
3R	25842914	3R_25842914_SNP [dm3] 3R_30017192_SNP [dm6]	G	T	3.322e^-4	0.904	SYNONYMOUS_CODING Mgat2 INTRON Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9718029	2L_9718029_SNP [dm3] 2L_9718029_SNP [dm6]	A	G	3.393e^-4	0.904	INTRON Nckx30C
X	19451831	X_19451831_SNP [dm3] X_19557798_SNP [dm6]	T	C	3.402e^-4	0.904	UPSTREAM mir-4966 & 1 other DOWNSTREAM mir-2499 INTERGENIC
3R	23981319	3R_23981319_SNP [dm3] 3R_28155597_SNP [dm6]	A	G	3.456e^-4	0.904	INTRON CG34354	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8334912	X_8334912_DEL [dm3] X_8440879_DEL [dm6]	AAA	A	3.484e^-4	0.904	UTR_3_PRIME CG1440 DOWNSTREAM CG12123
2L	9988204	2L_9988204_SNP [dm3] 2L_9988204_SNP [dm6]	A	G	3.485e^-4	0.904	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7489652	2R_7489652_SNP [dm3] 2R_11602147_SNP [dm6]	A	C	3.485e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	7490682	2R_7490682_SNP [dm3] 2R_11603177_SNP [dm6]	G	A	3.485e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7490773	2R_7490773_DEL [dm3] 2R_11603268_DEL [dm6]	ACA	A	3.485e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7491825	2R_7491825_SNP [dm3] 2R_11604320_SNP [dm6]	C	T	3.485e^-4	0.904	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	5072600	3L_5072600_SNP [dm3] 3L_5072600_SNP [dm6]	T	G	3.500e^-4	0.904	INTRON Con
2L	12305596	2L_12305596_SNP [dm3] 2L_12305596_SNP [dm6]	G	A	3.513e^-4	0.904	INTRON aret
X	13774616	X_13774616_SNP [dm3] X_13880583_SNP [dm6]	A	C	3.516e^-4	0.904	INTRON mamo
2R	793880	2R_793880_SNP [dm3] 2R_4906375_SNP [dm6]	A	T	3.519e^-4	0.904	INTRON CG44102
X	10958125	X_10958125_SNP [dm3] X_11064092_SNP [dm6]	A	G	3.524e^-4	0.904	UPSTREAM CG1537 INTERGENIC
X	6476115	X_6476115_SNP [dm3] X_6582082_SNP [dm6]	C	T	3.534e^-4	0.904	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21020347	3R_21020347_SNP [dm3] 3R_25194625_SNP [dm6]	T	C	3.540e^-4	0.904	UPSTREAM lobo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	713942	3L_713942_SNP [dm3] 3L_713942_SNP [dm6]	C	T	3.561e^-4	0.904	DOWNSTREAM CR45411 INTERGENIC	TF binding site mE1_TFBS_sens
3L	9350358	3L_9350358_SNP [dm3] 3L_9357258_SNP [dm6]	A	G	3.562e^-4	0.904	INTRON UGP	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20269879	3L_20269879_SNP [dm3] 3L_20276779_SNP [dm6]	G	A	3.573e^-4	0.904	INTRON gogo
3R	18411357	3R_18411357_SNP [dm3] 3R_22585635_SNP [dm6]	T	C	3.585e^-4	0.904	NON_SYNONYMOUS_CODING CG6937 UPSTREAM CG33107 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	18411713	3R_18411713_SNP [dm3] 3R_22585991_SNP [dm6]	G	A	3.585e^-4	0.904	SYNONYMOUS_CODING CG6937 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10662772	2R_10662772_SNP [dm3] 2R_14775267_SNP [dm6]	A	T	3.592e^-4	0.904	SPLICE_SITE_REGION kn INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19372480	2R_19372480_SNP [dm3] 2R_23484957_SNP [dm6]	C	G	3.600e^-4	0.904	INTRON CG43795
3R	18454401	3R_18454401_SNP [dm3] 3R_22628679_SNP [dm6]	T	C	3.604e^-4	0.904	UPSTREAM CR43475 & 1 other INTRON loco	regulatory region REDfly_CRMs
2R	9913594	2R_9913594_DEL [dm3] 2R_14026089_DEL [dm6]	CC	C	3.622e^-4	0.904	INTRON mam
2L	3088903	2L_3088903_SNP [dm3] 2L_3088903_SNP [dm6]	T	C	3.637e^-4	0.904	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6340166	2R_6340166_SNP [dm3] 2R_10452661_SNP [dm6]	G	A	3.643e^-4	0.904	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2R	6340183	2R_6340183_SNP [dm3] 2R_10452678_SNP [dm6]	G	A	3.643e^-4	0.904	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	978789	3L_978789_SNP [dm3] 3L_978789_SNP [dm6]	G	A	3.675e^-4	0.904	INTRON Glut1
3L	6349719	3L_6349719_SNP [dm3] 3L_6356619_SNP [dm6]	A	G	3.677e^-4	0.904	INTERGENIC
3R	8566126	3R_8566126_SNP [dm3] 3R_12740404_SNP [dm6]	A	C	3.680e^-4	0.904	INTRON CG5724
2L	15495124	2L_15495124_SNP [dm3] 2L_15495124_SNP [dm6]	T	A	3.697e^-4	0.904	INTERGENIC
2R	18240954	2R_18240954_SNP [dm3] 2R_22353449_SNP [dm6]	T	G	3.700e^-4	0.904	INTRON Liprin-gamma
2R	18282385	2R_18282385_SNP [dm3] 2R_22394880_SNP [dm6]	T	A	3.700e^-4	0.904	DOWNSTREAM CG13506 INTRON babos
3L	10870045	3L_10870045_SNP [dm3] 3L_10876945_SNP [dm6]	T	C	3.700e^-4	0.904	SYNONYMOUS_CODING CG6418 DOWNSTREAM tna	TF binding site mE1_TFBS_sens
3R	20804196	3R_20804196_SNP [dm3] 3R_24978474_SNP [dm6]	C	G	3.700e^-4	0.904	INTERGENIC
3R	21224174	3R_21224174_SNP [dm3] 3R_25398452_SNP [dm6]	G	A	3.700e^-4	0.904	NON_SYNONYMOUS_CODING Muc96D INTRON Fur1
2L	17637818	2L_17637818_SNP [dm3] 2L_17637818_SNP [dm6]	G	T	3.738e^-4	0.904	INTERGENIC
2L	14240328	2L_14240328_SNP [dm3] 2L_14240328_SNP [dm6]	A	T	3.792e^-4	0.904	UPSTREAM CR44216 INTERGENIC
X	10116230	X_10116230_SNP [dm3] X_10222197_SNP [dm6]	G	C	3.792e^-4	0.904	SYNONYMOUS_CODING CG34408 UPSTREAM CG34408
3R	19619584	3R_19619584_SNP [dm3] 3R_23793862_SNP [dm6]	T	C	3.798e^-4	0.904	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
3R	10913839	3R_10913839_SNP [dm3] 3R_15088117_SNP [dm6]	T	C	3.799e^-4	0.904	INTRON CG6966
3R	10913943	3R_10913943_SNP [dm3] 3R_15088221_SNP [dm6]	A	G	3.799e^-4	0.904	INTRON CG6966
3R	10913945	3R_10913945_SNP [dm3] 3R_15088223_SNP [dm6]	C	G	3.799e^-4	0.904	INTRON CG6966
3R	10913947	3R_10913947_SNP [dm3] 3R_15088225_SNP [dm6]	C	T	3.799e^-4	0.904	INTRON CG6966
3L	14877249	3L_14877249_INS [dm3] 3L_14884149_INS [dm6]	A	AA	3.809e^-4	0.904	INTERGENIC
3L	6349749	3L_6349749_SNP [dm3] 3L_6356649_SNP [dm6]	A	G	3.827e^-4	0.904	INTERGENIC
2R	8531258	2R_8531258_SNP [dm3] 2R_12643753_SNP [dm6]	G	T	3.856e^-4	0.904	INTRON CG8785
2R	8531342	2R_8531342_SNP [dm3] 2R_12643837_SNP [dm6]	A	G	3.856e^-4	0.904	INTRON CG8785
2R	8531345	2R_8531345_DEL [dm3] 2R_12643840_DEL [dm6]	TTCAATCAAATGCGAACATA...	T	3.856e^-4	0.904	INTRON CG8785
2L	4738617	2L_4738617_SNP [dm3] 2L_4738617_SNP [dm6]	G	A	3.863e^-4	0.904	INTRON CG15630	TF binding site mE1_TFBS_inv
3R	22354252	3R_22354252_SNP [dm3] 3R_26528530_SNP [dm6]	A	G	3.869e^-4	0.904	INTRON plum
2R	13484720	2R_13484720_SNP [dm3] 2R_17597215_SNP [dm6]	A	C	3.872e^-4	0.904	SYNONYMOUS_CODING CG11423 INTRON lack
2L	9963576	2L_9963576_SNP [dm3] 2L_9963576_SNP [dm6]	C	A	3.879e^-4	0.904	UTR_5_PRIME CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	9264670	X_9264670_SNP [dm3] X_9370637_SNP [dm6]	A	G	3.879e^-4	0.904	SYNONYMOUS_CODING mgl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	11170698	2R_11170698_SNP [dm3] 2R_15283193_SNP [dm6]	A	G	3.894e^-4	0.904	INTRON Trpm
2L	16630511	2L_16630511_SNP [dm3] 2L_16630511_SNP [dm6]	A	T	3.910e^-4	0.904	INTRON CG42389
2L	16630512	2L_16630512_SNP [dm3] 2L_16630512_SNP [dm6]	A	T	3.910e^-4	0.904	INTRON CG42389
3L	7329252	3L_7329252_SNP [dm3] 3L_7336152_SNP [dm6]	T	C	3.910e^-4	0.904	NON_SYNONYMOUS_CODING eco UPSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7329550	3L_7329550_SNP [dm3] 3L_7336450_SNP [dm6]	G	A	3.910e^-4	0.904	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7329556	3L_7329556_SNP [dm3] 3L_7336456_SNP [dm6]	T	C	3.910e^-4	0.904	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15186199	3R_15186199_SNP [dm3] 3R_19360477_SNP [dm6]	C	A	3.913e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15186216	3R_15186216_SNP [dm3] 3R_19360494_SNP [dm6]	A	G	3.913e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	17797832	3L_17797832_SNP [dm3] 3L_17804732_SNP [dm6]	G	T	3.914e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_eve
3L	17797936	3L_17797936_SNP [dm3] 3L_17804836_SNP [dm6]	C	T	3.914e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
X	19027333	X_19027333_SNP [dm3] X_19133300_SNP [dm6]	C	G	3.948e^-4	0.904	EXON CR45711
2R	7491801	2R_7491801_SNP [dm3] 2R_11604296_SNP [dm6]	C	A	3.958e^-4	0.904	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	2942747	X_2942747_SNP [dm3] X_3048714_SNP [dm6]	A	G	3.978e^-4	0.904	INTRON kirre
2L	9368530	2L_9368530_SNP [dm3] 2L_9368530_SNP [dm6]	C	A	3.991e^-4	0.904	DOWNSTREAM CG34181 INTERGENIC
2L	9368600	2L_9368600_SNP [dm3] 2L_9368600_SNP [dm6]	G	C	3.991e^-4	0.904	DOWNSTREAM CG34181 INTERGENIC
2L	9368671	2L_9368671_SNP [dm3] 2L_9368671_SNP [dm6]	C	G	3.991e^-4	0.904	DOWNSTREAM CG34181 INTERGENIC
X	2944138	X_2944138_INS [dm3] X_3050105_INS [dm6]	T	TATGACTTCAATT...	4.030e^-4	0.904	INTRON kirre
2R	15098344	2R_15098344_SNP [dm3] 2R_19210839_SNP [dm6]	T	A	4.031e^-4	0.904	INTRON hppy
2L	9556601	2L_9556601_SNP [dm3] 2L_9556601_SNP [dm6]	A	G	4.048e^-4	0.904	INTRON jp
2L	14363054	2L_14363054_SNP [dm3] 2L_14363054_SNP [dm6]	A	C	4.068e^-4	0.904	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	9117198	2L_9117198_SNP [dm3] 2L_9117198_SNP [dm6]	G	T	4.068e^-4	0.904	INTERGENIC
3L	9012851	3L_9012851_SNP [dm3] 3L_9019751_SNP [dm6]	C	G	4.089e^-4	0.904	UPSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6340169	2R_6340169_SNP [dm3] 2R_10452664_SNP [dm6]	G	A	4.102e^-4	0.904	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	1321261	3L_1321261_DEL [dm3] 3L_1321261_DEL [dm6]	GG	G	4.136e^-4	0.904	DOWNSTREAM CG9184 INTRON Myo61F
2L	13344712	2L_13344712_SNP [dm3] 2L_13344712_SNP [dm6]	T	A	4.143e^-4	0.904	INTERGENIC
3R	26665946	3R_26665946_SNP [dm3] 3R_30840224_SNP [dm6]	G	C	4.156e^-4	0.904	INTRON CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26665951	3R_26665951_SNP [dm3] 3R_30840229_SNP [dm6]	A	T	4.156e^-4	0.904	INTRON CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5364035	X_5364035_SNP [dm3] X_5470002_SNP [dm6]	A	T	4.162e^-4	0.904	INTRON SPR
2R	5939978	2R_5939978_SNP [dm3] 2R_10052473_SNP [dm6]	A	C	4.187e^-4	0.904	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8510101	2L_8510101_SNP [dm3] 2L_8510101_SNP [dm6]	G	T	4.196e^-4	0.904	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5720621	2L_5720621_SNP [dm3] 2L_5720621_SNP [dm6]	C	T	4.205e^-4	0.904	UPSTREAM sip1 & 1 other INTRON CG11149
X	11679803	X_11679803_SNP [dm3] X_11785770_SNP [dm6]	G	A	4.207e^-4	0.904	INTERGENIC
X	11679804	X_11679804_SNP [dm3] X_11785771_SNP [dm6]	A	G	4.207e^-4	0.904	INTERGENIC
X	11679810	X_11679810_INS [dm3] X_11785777_INS [dm6]	A	ATTATTAGTAGGA...	4.207e^-4	0.904	INTERGENIC
3R	16041835	3R_16041835_SNP [dm3] 3R_20216113_SNP [dm6]	G	T	4.217e^-4	0.904	INTRON Nlg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	20185602	X_20185602_DEL [dm3] X_20314575_DEL [dm6]	AT	A	4.221e^-4	0.904	INTRON CG1504
X	9559388	X_9559388_INS [dm3] X_9665355_INS [dm6]	T	TT	4.234e^-4	0.904	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9559392	X_9559392_SNP [dm3] X_9665359_SNP [dm6]	A	C	4.234e^-4	0.904	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18641560	2R_18641560_SNP [dm3] 2R_22754055_SNP [dm6]	A	T	4.239e^-4	0.904	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19020366	2L_19020366_SNP [dm3] 2L_19020366_SNP [dm6]	G	A	4.244e^-4	0.904	UPSTREAM CR44184 INTERGENIC
2L	15495105	2L_15495105_SNP [dm3] 2L_15495105_SNP [dm6]	T	C	4.248e^-4	0.904	INTERGENIC
3L	6989153	3L_6989153_SNP [dm3] 3L_6996053_SNP [dm6]	A	T	4.252e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
2R	9915180	2R_9915180_SNP [dm3] 2R_14027675_SNP [dm6]	C	A	4.268e^-4	0.904	UPSTREAM CG18371 INTRON mam
2L	17113033	2L_17113033_SNP [dm3] 2L_17113033_SNP [dm6]	A	G	4.304e^-4	0.904	INTERGENIC
2R	9127686	2R_9127686_SNP [dm3] 2R_13240181_SNP [dm6]	G	C	4.318e^-4	0.904	SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17113050	2L_17113050_SNP [dm3] 2L_17113050_SNP [dm6]	G	A	4.342e^-4	0.904	INTERGENIC
3L	10116518	3L_10116518_SNP [dm3] 3L_10123418_SNP [dm6]	C	A	4.349e^-4	0.904	INTRON dpr6
X	7496107	X_7496107_SNP [dm3] X_7602074_SNP [dm6]	A	T	4.353e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
2L	17081497	2L_17081497_SNP [dm3] 2L_17081497_SNP [dm6]	G	A	4.353e^-4	0.904	INTERGENIC
3L	13349969	3L_13349969_SNP [dm3] 3L_13356869_SNP [dm6]	C	T	4.353e^-4	0.904	INTRON Nplp2
3L	13349971	3L_13349971_INS [dm3] 3L_13356871_INS [dm6]	T	CTTA	4.353e^-4	0.904	INTRON Nplp2
3L	13349975	3L_13349975_INS [dm3] 3L_13356875_INS [dm6]	A	ATAAC	4.353e^-4	0.904	INTRON Nplp2
3L	13350074	3L_13350074_SNP [dm3] 3L_13356974_SNP [dm6]	G	A	4.353e^-4	0.904	INTRON Nplp2
2L	5720928	2L_5720928_SNP [dm3] 2L_5720928_SNP [dm6]	G	A	4.362e^-4	0.904	UPSTREAM sip1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	3199824	2L_3199824_SNP [dm3] 2L_3199824_SNP [dm6]	T	C	4.366e^-4	0.904	UPSTREAM CG34393 INTRON CG34393
2L	13840369	2L_13840369_SNP [dm3] 2L_13840369_SNP [dm6]	G	T	4.409e^-4	0.904	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19783154	3R_19783154_SNP [dm3] 3R_23957432_SNP [dm6]	C	T	4.424e^-4	0.904	SYNONYMOUS_CODING Aats-glupro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	18277694	2L_18277694_SNP [dm3] 2L_18277694_SNP [dm6]	C	T	4.425e^-4	0.904	DOWNSTREAM CR44902 INTERGENIC
2R	10979983	2R_10979983_SNP [dm3] 2R_15092478_SNP [dm6]	A	G	4.429e^-4	0.904	DOWNSTREAM CR44457 INTERGENIC
2R	9522453	2R_9522453_SNP [dm3] 2R_13634948_SNP [dm6]	C	G	4.446e^-4	0.904	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9522468	2R_9522468_SNP [dm3] 2R_13634963_SNP [dm6]	T	A	4.446e^-4	0.904	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10349150	2L_10349150_SNP [dm3] 2L_10349150_SNP [dm6]	T	A	4.450e^-4	0.904	INTRON CG34367
3L	5072432	3L_5072432_DEL [dm3] 3L_5072432_DEL [dm6]	CAACTATGCGATGCAGGATT...	C	4.464e^-4	0.904	INTRON Con
3L	5072462	3L_5072462_SNP [dm3] 3L_5072462_SNP [dm6]	C	A	4.464e^-4	0.904	INTRON Con
3L	5072501	3L_5072501_SNP [dm3] 3L_5072501_SNP [dm6]	T	A	4.464e^-4	0.904	INTRON Con
3L	5072509	3L_5072509_DEL [dm3] 3L_5072509_DEL [dm6]	TTTAAAATCTT...	T	4.464e^-4	0.904	INTRON Con
3L	5072538	3L_5072538_SNP [dm3] 3L_5072538_SNP [dm6]	T	A	4.464e^-4	0.904	INTRON Con
3L	5072552	3L_5072552_SNP [dm3] 3L_5072552_SNP [dm6]	A	G	4.464e^-4	0.904	INTRON Con
X	11303943	X_11303943_SNP [dm3] X_11409910_SNP [dm6]	T	G	4.474e^-4	0.904	UPSTREAM CG15196 DOWNSTREAM dlg1 INTERGENIC
2L	15957595	2L_15957595_SNP [dm3] 2L_15957595_SNP [dm6]	T	G	4.506e^-4	0.904	UPSTREAM CG18063 INTRON beat-Ib
X	16640847	X_16640847_SNP [dm3] X_16746814_SNP [dm6]	T	G	4.514e^-4	0.904	UPSTREAM CG9634 INTRON CG9634
2L	8927863	2L_8927863_SNP [dm3] 2L_8927863_SNP [dm6]	A	C	4.560e^-4	0.904	INTRON CG34398	TF binding site mE1_TFBS_cad
2L	8929951	2L_8929951_SNP [dm3] 2L_8929951_SNP [dm6]	C	T	4.560e^-4	0.904	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8930148	2L_8930148_SNP [dm3] 2L_8930148_SNP [dm6]	C	T	4.560e^-4	0.904	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1613342	X_1613342_SNP [dm3] X_1719309_SNP [dm6]	T	G	4.563e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3088883	2L_3088883_SNP [dm3] 2L_3088883_SNP [dm6]	C	G	4.573e^-4	0.904	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17051351	X_17051351_SNP [dm3] X_17157318_SNP [dm6]	C	T	4.577e^-4	0.904	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3R	4243101	3R_4243101_SNP [dm3] 3R_8417379_SNP [dm6]	C	T	4.577e^-4	0.904	INTRON CG45263
2L	6362332	2L_6362332_SNP [dm3] 2L_6362332_SNP [dm6]	C	G	4.579e^-4	0.904	DOWNSTREAM CR44778 INTERGENIC
2L	17782741	2L_17782741_SNP [dm3] 2L_17782741_SNP [dm6]	T	C	4.581e^-4	0.904	INTERGENIC
2L	8243990	2L_8243990_SNP [dm3] 2L_8243990_SNP [dm6]	A	G	4.581e^-4	0.904	UTR_5_PRIME CG43057 DOWNSTREAM CG8086 & 1 other
3L	3685430	3L_3685430_SNP [dm3] 3L_3685430_SNP [dm6]	G	A	4.591e^-4	0.904	INTERGENIC
3R	27255928	3R_27255928_SNP [dm3] 3R_31430206_SNP [dm6]	G	T	4.607e^-4	0.904	INTRON Gprk2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6040269	2R_6040269_SNP [dm3] 2R_10152764_SNP [dm6]	T	A	4.652e^-4	0.904	INTRON KCNQ EXON CR45133	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4247676	3R_4247676_SNP [dm3] 3R_8421954_SNP [dm6]	C	A	4.653e^-4	0.904	INTRON CG45263
3L	14467008	3L_14467008_SNP [dm3] 3L_14473908_SNP [dm6]	G	A	4.684e^-4	0.904	INTRON bbg
2L	9736446	2L_9736446_SNP [dm3] 2L_9736446_SNP [dm6]	C	A	4.688e^-4	0.904	UPSTREAM CG13117 INTRON Nckx30C
3L	11577214	3L_11577214_SNP [dm3] 3L_11584114_SNP [dm6]	A	G	4.693e^-4	0.904	UPSTREAM CG32086 DOWNSTREAM rt INTERGENIC
2L	8886557	2L_8886557_SNP [dm3] 2L_8886557_SNP [dm6]	A	T	4.710e^-4	0.904	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	8921830	2L_8921830_SNP [dm3] 2L_8921830_SNP [dm6]	G	C	4.710e^-4	0.904	INTRON CG34398
2R	13372147	2R_13372147_SNP [dm3] 2R_17484642_SNP [dm6]	G	A	4.710e^-4	0.904	START_GAINED CG43110 UTR_5_PRIME CG43110 UPSTREAM NT5E-2 & 1 other
X	16730258	X_16730258_SNP [dm3] X_16836225_SNP [dm6]	A	G	4.710e^-4	0.904	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7664373	2L_7664373_DEL [dm3] 2L_7664373_DEL [dm6]	CC	C	4.713e^-4	0.904	INTRON Slob
2L	8877780	2L_8877780_SNP [dm3] 2L_8877780_SNP [dm6]	G	T	4.715e^-4	0.904	INTERGENIC
3R	17986428	3R_17986428_SNP [dm3] 3R_22160706_SNP [dm6]	G	T	4.739e^-4	0.904	INTRON SKIP	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	17986441	3R_17986441_SNP [dm3] 3R_22160719_SNP [dm6]	G	A	4.739e^-4	0.904	INTRON SKIP	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	5414321	2L_5414321_SNP [dm3] 2L_5414321_SNP [dm6]	T	G	4.740e^-4	0.904	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10814349	2L_10814349_SNP [dm3] 2L_10814349_SNP [dm6]	A	G	4.769e^-4	0.904	INTRON Nos
2L	10105090	2L_10105090_SNP [dm3] 2L_10105090_SNP [dm6]	A	T	4.787e^-4	0.904	INTRON CG44153 & 1 other
2L	17051170	2L_17051170_SNP [dm3] 2L_17051170_SNP [dm6]	T	C	4.793e^-4	0.904	INTERGENIC
2L	17051343	2L_17051343_SNP [dm3] 2L_17051343_SNP [dm6]	T	G	4.793e^-4	0.904	INTERGENIC
2L	17093226	2L_17093226_SNP [dm3] 2L_17093226_SNP [dm6]	G	C	4.793e^-4	0.904	INTERGENIC
3R	24062554	3R_24062554_SNP [dm3] 3R_28236832_SNP [dm6]	C	T	4.793e^-4	0.904	DOWNSTREAM CR45041 INTRON CG34354
3R	24662249	3R_24662249_SNP [dm3] 3R_28836527_SNP [dm6]	T	G	4.793e^-4	0.904	INTRON Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15504544	X_15504544_SNP [dm3] X_15610511_SNP [dm6]	T	G	4.793e^-4	0.904	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2997867	X_2997867_SNP [dm3] X_3103834_SNP [dm6]	T	G	4.793e^-4	0.904	INTRON kirre
2L	9928632	2L_9928632_SNP [dm3] 2L_9928632_SNP [dm6]	T	A	4.860e^-4	0.904	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	9928646	2L_9928646_SNP [dm3] 2L_9928646_SNP [dm6]	A	C	4.860e^-4	0.904	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	13720631	2L_13720631_SNP [dm3] 2L_13720631_SNP [dm6]	A	T	4.874e^-4	0.904	INTERGENIC
2L	13720632	2L_13720632_SNP [dm3] 2L_13720632_SNP [dm6]	A	T	4.874e^-4	0.904	INTERGENIC
X	10737801	X_10737801_SNP [dm3] X_10843768_SNP [dm6]	G	T	4.878e^-4	0.904	SYNONYMOUS_CODING CG32669 DOWNSTREAM CG15209 INTRON sbr
3R	8563589	3R_8563589_SNP [dm3] 3R_12737867_SNP [dm6]	T	C	4.883e^-4	0.904	INTERGENIC
3R	8563601	3R_8563601_SNP [dm3] 3R_12737879_SNP [dm6]	C	T	4.883e^-4	0.904	INTERGENIC
3R	8563608	3R_8563608_SNP [dm3] 3R_12737886_SNP [dm6]	A	T	4.883e^-4	0.904	INTERGENIC
3R	8563609	3R_8563609_SNP [dm3] 3R_12737887_SNP [dm6]	T	G	4.883e^-4	0.904	INTERGENIC
3R	8563622	3R_8563622_SNP [dm3] 3R_12737900_SNP [dm6]	A	T	4.883e^-4	0.904	INTERGENIC
3R	20794419	3R_20794419_SNP [dm3] 3R_24968697_SNP [dm6]	A	G	4.908e^-4	0.904	INTERGENIC
3R	23481209	3R_23481209_SNP [dm3] 3R_27655487_SNP [dm6]	G	A	4.908e^-4	0.904	INTRON tau
3R	17085264	3R_17085264_SNP [dm3] 3R_21259542_SNP [dm6]	T	C	4.916e^-4	0.904	SYNONYMOUS_CODING ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18932602	3R_18932602_SNP [dm3] 3R_23106880_SNP [dm6]	T	G	4.916e^-4	0.904	INTRON CG13830
X	5196780	X_5196780_SNP [dm3] X_5302747_SNP [dm6]	A	T	4.916e^-4	0.904	UTR_3_PRIME CG42749 DOWNSTREAM CG3323 INTRON CG42749
3L	14157565	3L_14157565_INS [dm3] 3L_14164465_INS [dm6]	A	ACATA	4.924e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
2L	22011900	2L_22011900_SNP [dm3] 2L_22011900_SNP [dm6]	T	G	4.925e^-4	0.904	INTERGENIC
X	14629913	X_14629913_SNP [dm3] X_14735880_SNP [dm6]	G	C	4.950e^-4	0.904	INTRON NetB
2L	12201550	2L_12201550_SNP [dm3] 2L_12201550_SNP [dm6]	C	A	4.954e^-4	0.904	UTR_5_PRIME aret INTRON aret
2L	10459970	2L_10459970_SNP [dm3] 2L_10459970_SNP [dm6]	T	C	4.961e^-4	0.904	SYNONYMOUS_CODING LM408
3L	713810	3L_713810_SNP [dm3] 3L_713810_SNP [dm6]	A	G	4.977e^-4	0.904	DOWNSTREAM CR45411 INTERGENIC	TF binding site mE1_TFBS_sens
2L	22307347	2L_22307347_SNP [dm3] 2L_22307347_SNP [dm6]	T	A	4.988e^-4	0.904	INTERGENIC
3L	1055791	3L_1055791_SNP [dm3] 3L_1055791_SNP [dm6]	G	A	4.999e^-4	0.904	INTRON bab1
2L	6357169	2L_6357169_SNP [dm3] 2L_6357169_SNP [dm6]	C	T	5.007e^-4	0.904	UTR_3_PRIME CG9500 DOWNSTREAM ppk14	TF binding site mE1_TFBS_bab1
2L	6397333	2L_6397333_SNP [dm3] 2L_6397333_SNP [dm6]	T	G	5.014e^-4	0.904	UPSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7429605	3L_7429605_SNP [dm3] 3L_7436505_SNP [dm6]	G	A	5.038e^-4	0.904	DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3652188	3L_3652188_SNP [dm3] 3L_3652188_SNP [dm6]	G	A	5.038e^-4	0.904	INTRON dar1
3L	15324581	3L_15324581_SNP [dm3] 3L_15331481_SNP [dm6]	T	C	5.048e^-4	0.904	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9496651	2R_9496651_DEL [dm3] 2R_13609146_DEL [dm6]	AA	A	5.049e^-4	0.904	UTR_5_PRIME CG12464
3R	25755173	3R_25755173_SNP [dm3] 3R_29929451_SNP [dm6]	T	A	5.067e^-4	0.904	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2L	10479562	2L_10479562_DEL [dm3] 2L_10479562_DEL [dm6]	AA	T	5.072e^-4	0.904	INTRON RluA-2
2L	19192612	2L_19192612_SNP [dm3] 2L_19192612_SNP [dm6]	G	A	5.074e^-4	0.904	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9078000	2L_9078000_SNP [dm3] 2L_9078000_SNP [dm6]	T	C	5.109e^-4	0.904	DOWNSTREAM CG12439 INTERGENIC
2L	13840343	2L_13840343_SNP [dm3] 2L_13840343_SNP [dm6]	A	G	5.139e^-4	0.904	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21174737	X_21174737_SNP [dm3] X_21303710_SNP [dm6]	A	G	5.139e^-4	0.904	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
X	21174822	X_21174822_SNP [dm3] X_21303795_SNP [dm6]	T	A	5.139e^-4	0.904	UPSTREAM CG1718 & 1 other DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	3299646	3L_3299646_SNP [dm3] 3L_3299646_SNP [dm6]	A	G	5.154e^-4	0.904	SYNONYMOUS_CODING CG14968 DOWNSTREAM CG12009 & 1 other
3R	23996158	3R_23996158_SNP [dm3] 3R_28170436_SNP [dm6]	G	A	5.160e^-4	0.904	INTRON CG34354
2R	8531344	2R_8531344_SNP [dm3] 2R_12643839_SNP [dm6]	A	C	5.177e^-4	0.904	INTRON CG8785
2R	7155812	2R_7155812_SNP [dm3] 2R_11268307_SNP [dm6]	A	G	5.323e^-4	0.904	SYNONYMOUS_CODING Cpr47Ef
3L	3872006	3L_3872006_SNP [dm3] 3L_3872006_SNP [dm6]	T	A	5.325e^-4	0.904	INTERGENIC
3R	25347298	3R_25347298_SNP [dm3] 3R_29521576_SNP [dm6]	G	A	5.336e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_sens
2L	2814372	2L_2814372_SNP [dm3] 2L_2814372_SNP [dm6]	C	A	5.342e^-4	0.904	UTR_3_PRIME CG2964 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10974869	2L_10974869_SNP [dm3] 2L_10974869_SNP [dm6]	G	C	5.352e^-4	0.904	NON_SYNONYMOUS_CODING abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26455955	3R_26455955_SNP [dm3] 3R_30630233_SNP [dm6]	T	C	5.356e^-4	0.904	INTERGENIC
3R	17986638	3R_17986638_SNP [dm3] 3R_22160916_SNP [dm6]	A	G	5.358e^-4	0.904	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	9962195	2L_9962195_SNP [dm3] 2L_9962195_SNP [dm6]	G	A	5.372e^-4	0.904	DOWNSTREAM CR43683 INTRON CG5850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5624054	2L_5624054_SNP [dm3] 2L_5624054_SNP [dm6]	C	A	5.392e^-4	0.904	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18275902	2L_18275902_SNP [dm3] 2L_18275902_SNP [dm6]	A	T	5.411e^-4	0.904	UPSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13584686	X_13584686_INS [dm3] X_13690653_INS [dm6]	T	TAACGGGCGT	5.415e^-4	0.904	INTRON CG9940
2L	8926373	2L_8926373_SNP [dm3] 2L_8926373_SNP [dm6]	C	T	5.430e^-4	0.904	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13903665	2R_13903665_SNP [dm3] 2R_18016160_SNP [dm6]	A	T	5.434e^-4	0.904	INTERGENIC
3R	12040898	3R_12040898_SNP [dm3] 3R_16215176_SNP [dm6]	A	G	5.435e^-4	0.904	DOWNSTREAM CR45641 INTERGENIC
3L	19348041	3L_19348041_SNP [dm3] 3L_19354941_SNP [dm6]	A	G	5.466e^-4	0.904	INTRON CG32206
2L	9077523	2L_9077523_SNP [dm3] 2L_9077523_SNP [dm6]	T	C	5.480e^-4	0.904	SYNONYMOUS_CODING CG12439
2R	16952284	2R_16952284_SNP [dm3] 2R_21064779_SNP [dm6]	C	G	5.480e^-4	0.904	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
2R	16993448	2R_16993448_SNP [dm3] 2R_21105943_SNP [dm6]	T	A	5.480e^-4	0.904	INTRON ktub
2R	16994340	2R_16994340_SNP [dm3] 2R_21106835_SNP [dm6]	A	G	5.480e^-4	0.904	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19374443	2R_19374443_SNP [dm3] 2R_23486920_SNP [dm6]	A	C	5.480e^-4	0.904	SPLICE_SITE_REGION CG43795 INTRON CG43795	TF binding site mE1_TFBS_chinmo
2R	8438117	2R_8438117_SNP [dm3] 2R_12550612_SNP [dm6]	C	T	5.480e^-4	0.904	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8438230	2R_8438230_DEL [dm3] 2R_12550725_DEL [dm6]	GTTGTTGG	G	5.480e^-4	0.904	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14475138	X_14475138_SNP [dm3] X_14581105_SNP [dm6]	A	T	5.480e^-4	0.904	INTRON CG14414	TF binding site BDTNP1_TFBS_dl
X	14566052	X_14566052_SNP [dm3] X_14672019_SNP [dm6]	A	G	5.480e^-4	0.904	INTERGENIC
X	14566093	X_14566093_SNP [dm3] X_14672060_SNP [dm6]	A	T	5.480e^-4	0.904	INTERGENIC
X	14566095	X_14566095_SNP [dm3] X_14672062_SNP [dm6]	C	T	5.480e^-4	0.904	INTERGENIC
X	9918443	X_9918443_SNP [dm3] X_10024410_SNP [dm6]	A	T	5.480e^-4	0.904	INTRON Cht6
X	9918452	X_9918452_SNP [dm3] X_10024419_SNP [dm6]	G	A	5.480e^-4	0.904	INTRON Cht6
2R	17527684	2R_17527684_SNP [dm3] 2R_21640179_SNP [dm6]	G	T	5.480e^-4	0.904	INTERGENIC
3R	11352039	3R_11352039_SNP [dm3] 3R_15526317_SNP [dm6]	T	G	5.494e^-4	0.904	INTERGENIC
X	6258602	X_6258602_SNP [dm3] X_6364569_SNP [dm6]	G	T	5.534e^-4	0.904	NON_SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25844126	3R_25844126_SNP [dm3] 3R_30018404_SNP [dm6]	C	T	5.607e^-4	0.904	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9735352	3L_9735352_SNP [dm3] 3L_9742252_SNP [dm6]	T	A	5.609e^-4	0.904	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9735276	3L_9735276_SNP [dm3] 3L_9742176_SNP [dm6]	A	G	5.628e^-4	0.904	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10012175	2R_10012175_SNP [dm3] 2R_14124670_SNP [dm6]	T	C	5.660e^-4	0.904	INTRON Prosap
3L	7106393	3L_7106393_SNP [dm3] 3L_7113293_SNP [dm6]	A	G	5.686e^-4	0.904	INTRON form3
3L	9213802	3L_9213802_SNP [dm3] 3L_9220702_SNP [dm6]	T	C	5.689e^-4	0.904	INTERGENIC
3L	18090401	3L_18090401_SNP [dm3] 3L_18097301_SNP [dm6]	G	A	5.698e^-4	0.904	INTRON CG13698
2R	17001643	2R_17001643_SNP [dm3] 2R_21114138_SNP [dm6]	C	T	5.715e^-4	0.904	INTRON ktub
3R	17986749	3R_17986749_SNP [dm3] 3R_22161027_SNP [dm6]	C	G	5.728e^-4	0.904	INTRON SKIP
3L	22722263	3L_22722263_DEL [dm3] 3L_22729163_DEL [dm6]	AC	A	5.745e^-4	0.904	UPSTREAM CG32454 INTRON CG11367	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15546729	2L_15546729_SNP [dm3] 2L_15546729_SNP [dm6]	G	A	5.762e^-4	0.904	UPSTREAM Skadu INTERGENIC
3R	13976543	3R_13976543_SNP [dm3] 3R_18150821_SNP [dm6]	A	T	5.772e^-4	0.904	INTERGENIC
2L	10460012	2L_10460012_SNP [dm3] 2L_10460012_SNP [dm6]	T	C	5.790e^-4	0.904	SYNONYMOUS_CODING LM408
2L	13261402	2L_13261402_SNP [dm3] 2L_13261402_SNP [dm6]	T	C	5.808e^-4	0.904	UTR_5_PRIME CG44085 INTRON CG44085
2L	6397301	2L_6397301_SNP [dm3] 2L_6397301_SNP [dm6]	G	A	5.813e^-4	0.904	UPSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2942745	X_2942745_SNP [dm3] X_3048712_SNP [dm6]	G	A	5.841e^-4	0.904	INTRON kirre
3R	24527919	3R_24527919_SNP [dm3] 3R_28702197_SNP [dm6]	A	T	5.846e^-4	0.904	INTRON htt	TF binding site mE1_TFBS_cad
2R	17574000	2R_17574000_SNP [dm3] 2R_21686495_SNP [dm6]	C	T	5.847e^-4	0.904	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl
3L	13566806	3L_13566806_SNP [dm3] 3L_13573706_SNP [dm6]	A	T	5.847e^-4	0.904	INTRON bru-3
X	2942951	X_2942951_SNP [dm3] X_3048918_SNP [dm6]	C	A	5.847e^-4	0.904	INTRON kirre
X	2944090	X_2944090_SNP [dm3] X_3050057_SNP [dm6]	A	C	5.847e^-4	0.904	INTRON kirre
X	2944092	X_2944092_SNP [dm3] X_3050059_SNP [dm6]	C	A	5.847e^-4	0.904	INTRON kirre
3R	26059114	3R_26059114_SNP [dm3] 3R_30233392_SNP [dm6]	T	C	5.849e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25228969	3R_25228969_SNP [dm3] 3R_29403247_SNP [dm6]	A	G	5.871e^-4	0.904	INTRON Ptp99A
2R	8281053	2R_8281053_SNP [dm3] 2R_12393548_SNP [dm6]	C	A	5.873e^-4	0.904	SYNONYMOUS_CODING Or49a
3R	14259247	3R_14259247_SNP [dm3] 3R_18433525_SNP [dm6]	C	A	5.903e^-4	0.904	INTRON fru
3R	14259258	3R_14259258_SNP [dm3] 3R_18433536_SNP [dm6]	A	T	5.903e^-4	0.904	INTRON fru
3L	13320607	3L_13320607_SNP [dm3] 3L_13327507_SNP [dm6]	G	C	5.911e^-4	0.904	INTERGENIC
3L	13320612	3L_13320612_SNP [dm3] 3L_13327512_SNP [dm6]	A	G	5.911e^-4	0.904	INTERGENIC
2L	22011876	2L_22011876_SNP [dm3] 2L_22011876_SNP [dm6]	G	A	5.918e^-4	0.904	INTERGENIC
2L	13252246	2L_13252246_SNP [dm3] 2L_13252246_SNP [dm6]	T	C	5.935e^-4	0.904	NON_SYNONYMOUS_CODING CG31728
2L	9736180	2L_9736180_SNP [dm3] 2L_9736180_SNP [dm6]	C	T	5.937e^-4	0.904	UPSTREAM CG13117 INTRON Nckx30C
3L	13320542	3L_13320542_SNP [dm3] 3L_13327442_SNP [dm6]	T	A	5.938e^-4	0.904	INTERGENIC
X	9559400	X_9559400_SNP [dm3] X_9665367_SNP [dm6]	A	G	5.953e^-4	0.904	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17782723	2L_17782723_DEL [dm3] 2L_17782723_DEL [dm6]	TAT	T	5.955e^-4	0.904	INTERGENIC
2L	17782727	2L_17782727_SNP [dm3] 2L_17782727_SNP [dm6]	G	A	5.955e^-4	0.904	INTERGENIC
2L	17782735	2L_17782735_SNP [dm3] 2L_17782735_SNP [dm6]	T	A	5.955e^-4	0.904	INTERGENIC
3R	21488106	3R_21488106_DEL [dm3] 3R_25662384_DEL [dm6]	TAG	T	5.964e^-4	0.904	UTR_5_PRIME RASSF8 EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17858497	X_17858497_SNP [dm3] X_17964464_SNP [dm6]	C	T	5.968e^-4	0.904	INTRON Sh
3L	7287994	3L_7287994_INS [dm3] 3L_7294894_INS [dm6]	G	GTTGGCATG	6.016e^-4	0.904	UTR_5_PRIME unc-13-4A
2L	7727716	2L_7727716_SNP [dm3] 2L_7727716_SNP [dm6]	A	G	6.033e^-4	0.904	SYNONYMOUS_CODING CG13796
2R	9236654	2R_9236654_SNP [dm3] 2R_13349149_SNP [dm6]	A	G	6.052e^-4	0.904	INTRON CR44206	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9090766	2L_9090766_SNP [dm3] 2L_9090766_SNP [dm6]	G	A	6.054e^-4	0.904	INTERGENIC
3R	14373469	3R_14373469_DEL [dm3] 3R_18547747_DEL [dm6]	AAA	C	6.061e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7922344	X_7922344_SNP [dm3] X_8028311_SNP [dm6]	T	C	6.064e^-4	0.904	DOWNSTREAM Tbh INTERGENIC
2L	3489895	2L_3489895_SNP [dm3] 2L_3489895_SNP [dm6]	A	T	6.086e^-4	0.904	INTRON CG15414
2L	9746274	2L_9746274_DEL [dm3] 2L_9746274_DEL [dm6]	CC	C	6.086e^-4	0.904	INTRON Nckx30C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10517724	3R_10517724_SNP [dm3] 3R_14692002_SNP [dm6]	G	A	6.091e^-4	0.904	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	25092371	3R_25092371_SNP [dm3] 3R_29266649_SNP [dm6]	A	C	6.094e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17582745	2R_17582745_SNP [dm3] 2R_21695240_SNP [dm6]	G	A	6.116e^-4	0.904	NON_SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18392358	2L_18392358_SNP [dm3] 2L_18392358_SNP [dm6]	C	T	6.124e^-4	0.904	SYNONYMOUS_CODING Fas3 UTR_3_PRIME Fas3
3L	18831424	3L_18831424_SNP [dm3] 3L_18838324_SNP [dm6]	A	T	6.143e^-4	0.904	INTRON Indy	TF binding site mE1_TFBS_zfh1
2L	18573536	2L_18573536_SNP [dm3] 2L_18573536_SNP [dm6]	C	T	6.149e^-4	0.904	INTRON Pde11
X	16075006	X_16075006_SNP [dm3] X_16180973_SNP [dm6]	G	A	6.149e^-4	0.904	INTERGENIC
3L	4423411	3L_4423411_SNP [dm3] 3L_4423411_SNP [dm6]	A	C	6.180e^-4	0.904	INTRON CG15020
3R	11751251	3R_11751251_SNP [dm3] 3R_15925529_SNP [dm6]	T	G	6.182e^-4	0.904	UPSTREAM CG34276 INTRON CG4221
2L	7217807	2L_7217807_SNP [dm3] 2L_7217807_SNP [dm6]	T	C	6.184e^-4	0.904	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14537607	2L_14537607_SNP [dm3] 2L_14537607_SNP [dm6]	C	T	6.208e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	12040754	3R_12040754_SNP [dm3] 3R_16215032_SNP [dm6]	G	C	6.209e^-4	0.904	DOWNSTREAM CR45641 INTERGENIC
3R	12040760	3R_12040760_SNP [dm3] 3R_16215038_SNP [dm6]	T	C	6.209e^-4	0.904	DOWNSTREAM CR45641 INTERGENIC
3R	24023432	3R_24023432_SNP [dm3] 3R_28197710_SNP [dm6]	T	A	6.222e^-4	0.904	INTRON CG34354	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3533117	3L_3533117_SNP [dm3] 3L_3533117_SNP [dm6]	T	A	6.223e^-4	0.904	INTRON Eip63E
2R	8435169	2R_8435169_SNP [dm3] 2R_12547664_SNP [dm6]	T	C	6.229e^-4	0.904	INTRON fra
X	8291877	X_8291877_SNP [dm3] X_8397844_SNP [dm6]	C	G	6.245e^-4	0.904	UTR_5_PRIME CG15345
2R	13684360	2R_13684360_SNP [dm3] 2R_17796855_SNP [dm6]	T	A	6.252e^-4	0.904	INTRON Dhit	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8291929	X_8291929_SNP [dm3] X_8397896_SNP [dm6]	T	C	6.267e^-4	0.904	UTR_5_PRIME CG15345
2L	2430222	2L_2430222_SNP [dm3] 2L_2430222_SNP [dm6]	C	T	6.274e^-4	0.904	INTRON dpp
2L	10349159	2L_10349159_SNP [dm3] 2L_10349159_SNP [dm6]	A	T	6.276e^-4	0.904	INTRON CG34367
3L	7523506	3L_7523506_SNP [dm3] 3L_7530406_SNP [dm6]	C	G	6.277e^-4	0.904	INTRON lqf
2R	827689	2R_827689_SNP [dm3] 2R_4940184_SNP [dm6]	T	C	6.308e^-4	0.904	INTRON Ir41a	TF binding site mE1_TFBS_sens
2R	827690	2R_827690_SNP [dm3] 2R_4940185_SNP [dm6]	T	A	6.308e^-4	0.904	INTRON Ir41a	TF binding site mE1_TFBS_sens
2L	9988088	2L_9988088_SNP [dm3] 2L_9988088_SNP [dm6]	G	C	6.313e^-4	0.904	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9988090	2L_9988090_SNP [dm3] 2L_9988090_SNP [dm6]	G	A	6.313e^-4	0.904	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9988103	2L_9988103_SNP [dm3] 2L_9988103_SNP [dm6]	G	T	6.313e^-4	0.904	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7489783	2R_7489783_DEL [dm3] 2R_11602278_DEL [dm6]	AA	A	6.313e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7490986	2R_7490986_SNP [dm3] 2R_11603481_SNP [dm6]	T	C	6.313e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5088329	3L_5088329_SNP [dm3] 3L_5088329_SNP [dm6]	T	A	6.313e^-4	0.904	INTERGENIC
X	8049971	X_8049971_SNP [dm3] X_8155938_SNP [dm6]	G	T	6.317e^-4	0.904	SYNONYMOUS_CODING Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3236975	X_3236975_SNP [dm3] X_3342942_SNP [dm6]	A	T	6.323e^-4	0.904	UTR_3_PRIME dnc INTRON CR44886
2L	10349314	2L_10349314_SNP [dm3] 2L_10349314_SNP [dm6]	G	A	6.342e^-4	0.904	INTRON CG34367
2L	10349327	2L_10349327_SNP [dm3] 2L_10349327_SNP [dm6]	C	G	6.342e^-4	0.904	INTRON CG34367
2L	2244435	2L_2244435_SNP [dm3] 2L_2244435_SNP [dm6]	T	C	6.347e^-4	0.904	UTR_3_PRIME CG4267 UPSTREAM CR42859 DOWNSTREAM CG4267
3L	4978279	3L_4978279_SNP [dm3] 3L_4978279_SNP [dm6]	C	T	6.350e^-4	0.904	INTRON Con
2L	8652674	2L_8652674_SNP [dm3] 2L_8652674_SNP [dm6]	A	C	6.361e^-4	0.904	INTRON Sema-1a
3R	24210405	3R_24210405_SNP [dm3] 3R_28384683_SNP [dm6]	T	A	6.372e^-4	0.904	INTERGENIC
X	16640457	X_16640457_SNP [dm3] X_16746424_SNP [dm6]	T	C	6.450e^-4	0.904	UPSTREAM CG9634 INTRON CG9634
3L	7426814	3L_7426814_SNP [dm3] 3L_7433714_SNP [dm6]	C	T	6.452e^-4	0.904	UTR_3_PRIME Rac2 DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	20241608	3L_20241608_SNP [dm3] 3L_20248508_SNP [dm6]	T	C	6.474e^-4	0.904	UPSTREAM rdgC INTRON rdgC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15093862	3L_15093862_SNP [dm3] 3L_15100762_SNP [dm6]	T	A	6.496e^-4	0.904	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10554631	2L_10554631_SNP [dm3] 2L_10554631_SNP [dm6]	T	A	6.499e^-4	0.904	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	1371188	3L_1371188_SNP [dm3] 3L_1371188_SNP [dm6]	C	A	6.520e^-4	0.904	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	14039751	3L_14039751_SNP [dm3] 3L_14046651_SNP [dm6]	A	C	6.520e^-4	0.904	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20945981	3R_20945981_SNP [dm3] 3R_25120259_SNP [dm6]	T	A	6.520e^-4	0.904	SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_sens
3R	9110941	3R_9110941_SNP [dm3] 3R_13285219_SNP [dm6]	C	G	6.522e^-4	0.904	SYNONYMOUS_CODING CG15888 DOWNSTREAM CG8630
3L	20030216	3L_20030216_SNP [dm3] 3L_20037116_SNP [dm6]	A	G	6.554e^-4	0.904	INTERGENIC
2R	7564945	2R_7564945_SNP [dm3] 2R_11677440_SNP [dm6]	G	A	6.564e^-4	0.904	NON_SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
3R	27076301	3R_27076301_SNP [dm3] 3R_31250579_SNP [dm6]	G	A	6.577e^-4	0.904	INTRON qless	TF binding site mE1_TFBS_bab1
3L	10033670	3L_10033670_SNP [dm3] 3L_10040570_SNP [dm6]	T	C	6.592e^-4	0.904	INTRON dpr6
3L	679759	3L_679759_SNP [dm3] 3L_679759_SNP [dm6]	A	G	6.614e^-4	0.904	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5714073	2R_5714073_SNP [dm3] 2R_9826568_SNP [dm6]	A	G	6.620e^-4	0.904	NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5714087	2R_5714087_SNP [dm3] 2R_9826582_SNP [dm6]	A	C	6.620e^-4	0.904	SPLICE_SITE_DONOR dila NON_SYNONYMOUS_CODING dila INTRON dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10297319	X_10297319_SNP [dm3] X_10403286_SNP [dm6]	A	C	6.626e^-4	0.904	INTRON flw
3L	11566386	3L_11566386_SNP [dm3] 3L_11573286_SNP [dm6]	T	G	6.638e^-4	0.904	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2R	15332507	2R_15332507_SNP [dm3] 2R_19445002_SNP [dm6]	C	T	6.642e^-4	0.904	UTR_3_PRIME Arl6 DOWNSTREAM EloC	TF binding site mE1_TFBS_HSA
2R	8361057	2R_8361057_SNP [dm3] 2R_12473552_SNP [dm6]	C	T	6.662e^-4	0.904	SYNONYMOUS_CODING CG8550 UPSTREAM Dh44-R2
2L	6999888	2L_6999888_SNP [dm3] 2L_6999888_SNP [dm6]	T	G	6.662e^-4	0.904	UTR_5_PRIME uif
2L	8876061	2L_8876061_SNP [dm3] 2L_8876061_SNP [dm6]	A	G	6.667e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	25845980	3R_25845980_SNP [dm3] 3R_30020258_SNP [dm6]	G	C	6.678e^-4	0.904	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
X	8171917	X_8171917_SNP [dm3] X_8277884_SNP [dm6]	C	A	6.704e^-4	0.904	UTR_3_PRIME nAChRalpha3
X	8172481	X_8172481_SNP [dm3] X_8278448_SNP [dm6]	A	C	6.704e^-4	0.904	UTR_3_PRIME nAChRalpha3
2L	2240524	2L_2240524_SNP [dm3] 2L_2240524_SNP [dm6]	A	G	6.705e^-4	0.904	UTR_5_PRIME Tengl1
2R	7490683	2R_7490683_SNP [dm3] 2R_11603178_SNP [dm6]	T	A	6.722e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17147122	3R_17147122_SNP [dm3] 3R_21321400_SNP [dm6]	A	G	6.724e^-4	0.904	SYNONYMOUS_CODING CG16791	TF binding site mE1_TFBS_cad
3R	17147339	3R_17147339_SNP [dm3] 3R_21321617_SNP [dm6]	C	T	6.724e^-4	0.904	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	17147362	3R_17147362_SNP [dm3] 3R_21321640_SNP [dm6]	G	T	6.724e^-4	0.904	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	17147398	3R_17147398_SNP [dm3] 3R_21321676_SNP [dm6]	T	G	6.724e^-4	0.904	INTRON CG16791	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17147494	3R_17147494_SNP [dm3] 3R_21321772_SNP [dm6]	C	G	6.724e^-4	0.904	INTRON CG16791	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17112979	2L_17112979_SNP [dm3] 2L_17112979_SNP [dm6]	A	G	6.726e^-4	0.904	INTERGENIC
3L	10315280	3L_10315280_SNP [dm3] 3L_10322180_SNP [dm6]	T	C	6.738e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	3915989	3R_3915989_SNP [dm3] 3R_8090267_SNP [dm6]	T	C	6.738e^-4	0.904	DOWNSTREAM CG7910 EXON CR44330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	3916043	3R_3916043_SNP [dm3] 3R_8090321_SNP [dm6]	T	G	6.738e^-4	0.904	DOWNSTREAM CG7910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	9627895	3R_9627895_SNP [dm3] 3R_13802173_SNP [dm6]	C	T	6.760e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9627900	3R_9627900_SNP [dm3] 3R_13802178_SNP [dm6]	C	T	6.760e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12874902	3L_12874902_INS [dm3] 3L_12881802_INS [dm6]	A	AC	6.771e^-4	0.904	INTERGENIC
2R	16355940	2R_16355940_SNP [dm3] 2R_20468435_SNP [dm6]	C	T	6.797e^-4	0.904	INTRON CG12484
3R	17986703	3R_17986703_SNP [dm3] 3R_22160981_SNP [dm6]	A	G	6.834e^-4	0.904	INTRON SKIP
2L	6397336	2L_6397336_SNP [dm3] 2L_6397336_SNP [dm6]	G	T	6.857e^-4	0.904	UPSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17025699	2R_17025699_SNP [dm3] 2R_21138194_SNP [dm6]	T	G	6.869e^-4	0.904	INTRON Magi	TF binding site mE1_TFBS_chinmo
2L	11954985	2L_11954985_SNP [dm3] 2L_11954985_SNP [dm6]	C	T	6.883e^-4	0.904	EXON CR43314
3L	8061436	3L_8061436_SNP [dm3] 3L_8068336_SNP [dm6]	T	C	6.887e^-4	0.904	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
X	8755473	X_8755473_SNP [dm3] X_8861440_SNP [dm6]	G	A	6.887e^-4	0.904	INTRON CG12075
2L	10152732	2L_10152732_SNP [dm3] 2L_10152732_SNP [dm6]	C	T	6.907e^-4	0.904	SYNONYMOUS_CODING CG4839 INTRON CG44153
3R	19967184	3R_19967184_SNP [dm3] 3R_24141462_SNP [dm6]	A	T	6.907e^-4	0.904	UTR_5_PRIME Kal1 DOWNSTREAM Npc2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19967187	3R_19967187_SNP [dm3] 3R_24141465_SNP [dm6]	C	T	6.907e^-4	0.904	START_GAINED Kal1 UTR_5_PRIME Kal1 DOWNSTREAM Npc2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9745874	2L_9745874_DEL [dm3] 2L_9745874_DEL [dm6]	AA	A	6.927e^-4	0.904	INTRON Nckx30C
3L	7991987	3L_7991987_SNP [dm3] 3L_7998887_SNP [dm6]	C	A	6.931e^-4	0.904	INTRON nmo
X	17069922	X_17069922_SNP [dm3] X_17175889_SNP [dm6]	A	G	6.931e^-4	0.904	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_zfh1
X	9762668	X_9762668_SNP [dm3] X_9868635_SNP [dm6]	T	G	6.936e^-4	0.904	UPSTREAM CG45060 INTERGENIC
3L	6987225	3L_6987225_SNP [dm3] 3L_6994125_SNP [dm6]	A	G	6.955e^-4	0.904	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24253793	3R_24253793_SNP [dm3] 3R_28428071_SNP [dm6]	G	C	6.964e^-4	0.904	INTRON beat-VI
3R	24253795	3R_24253795_SNP [dm3] 3R_28428073_SNP [dm6]	A	T	6.964e^-4	0.904	INTRON beat-VI
3R	24253800	3R_24253800_SNP [dm3] 3R_28428078_SNP [dm6]	C	T	6.964e^-4	0.904	INTRON beat-VI
3R	14702339	3R_14702339_SNP [dm3] 3R_18876617_SNP [dm6]	C	G	6.967e^-4	0.904	INTRON CG14298
2L	2240311	2L_2240311_SNP [dm3] 2L_2240311_SNP [dm6]	A	C	6.984e^-4	0.904	UPSTREAM Tengl2 INTRON Tengl1
2L	4843691	2L_4843691_SNP [dm3] 2L_4843691_SNP [dm6]	T	C	6.995e^-4	0.904	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	6575268	2R_6575268_SNP [dm3] 2R_10687763_SNP [dm6]	A	G	6.995e^-4	0.904	INTRON stan
3L	5072420	3L_5072420_SNP [dm3] 3L_5072420_SNP [dm6]	A	G	7.012e^-4	0.904	INTRON Con
3L	5072425	3L_5072425_SNP [dm3] 3L_5072425_SNP [dm6]	T	A	7.012e^-4	0.904	INTRON Con
3L	5072426	3L_5072426_SNP [dm3] 3L_5072426_SNP [dm6]	C	T	7.012e^-4	0.904	INTRON Con
X	3518516	X_3518516_SNP [dm3] X_3624483_SNP [dm6]	T	C	7.023e^-4	0.904	INTRON AstA-R1
2R	10387671	2R_10387671_SNP [dm3] 2R_14500166_SNP [dm6]	T	G	7.024e^-4	0.904	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_sens
2L	8875589	2L_8875589_SNP [dm3] 2L_8875589_SNP [dm6]	G	A	7.048e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8875672	2L_8875672_SNP [dm3] 2L_8875672_SNP [dm6]	A	G	7.048e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8875680	2L_8875680_SNP [dm3] 2L_8875680_SNP [dm6]	G	C	7.048e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18040558	2R_18040558_SNP [dm3] 2R_22153053_SNP [dm6]	G	A	7.048e^-4	0.904	INTRON a	TF binding site mE1_TFBS_cnc
3L	9652632	3L_9652632_SNP [dm3] 3L_9659532_SNP [dm6]	T	A	7.048e^-4	0.904	DOWNSTREAM CG33696 INTRON fry
3L	9652635	3L_9652635_SNP [dm3] 3L_9659535_SNP [dm6]	A	T	7.048e^-4	0.904	DOWNSTREAM CG33696 INTRON fry
3L	9652681	3L_9652681_SNP [dm3] 3L_9659581_SNP [dm6]	C	A	7.048e^-4	0.904	DOWNSTREAM CG33696 INTRON fry
2R	7490809	2R_7490809_DEL [dm3] 2R_11603304_DEL [dm6]	GG	G	7.051e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18681129	3R_18681129_SNP [dm3] 3R_22855407_SNP [dm6]	A	G	7.051e^-4	0.904	INTERGENIC
3R	18681144	3R_18681144_SNP [dm3] 3R_22855422_SNP [dm6]	C	G	7.051e^-4	0.904	INTERGENIC
3R	18681176	3R_18681176_SNP [dm3] 3R_22855454_SNP [dm6]	C	A	7.051e^-4	0.904	INTERGENIC
3L	13101506	3L_13101506_SNP [dm3] 3L_13108406_SNP [dm6]	A	G	7.070e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	17051169	2L_17051169_SNP [dm3] 2L_17051169_SNP [dm6]	G	C	7.082e^-4	0.904	INTERGENIC
2L	14354643	2L_14354643_SNP [dm3] 2L_14354643_SNP [dm6]	G	A	7.090e^-4	0.904	SYNONYMOUS_CODING l_2_34Fd UPSTREAM Rab14 DOWNSTREAM CR44851	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8942172	2R_8942172_SNP [dm3] 2R_13054667_SNP [dm6]	T	G	7.107e^-4	0.904	DOWNSTREAM Drl-2 INTERGENIC
2L	7214401	2L_7214401_SNP [dm3] 2L_7214401_SNP [dm6]	C	A	7.131e^-4	0.904	INTRON CG13784
3L	2484553	3L_2484553_SNP [dm3] 3L_2484553_SNP [dm6]	T	C	7.134e^-4	0.904	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10979968	2R_10979968_SNP [dm3] 2R_15092463_SNP [dm6]	G	A	7.169e^-4	0.904	DOWNSTREAM CR44457 INTERGENIC
2R	10979978	2R_10979978_SNP [dm3] 2R_15092473_SNP [dm6]	G	A	7.169e^-4	0.904	DOWNSTREAM CR44457 INTERGENIC
2R	17365170	2R_17365170_SNP [dm3] 2R_21477665_SNP [dm6]	C	T	7.182e^-4	0.904	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16808407	2R_16808407_SNP [dm3] 2R_20920902_SNP [dm6]	T	C	7.183e^-4	0.904	INTRON Rx	TF binding site mE1_TFBS_cnc
2R	16808410	2R_16808410_SNP [dm3] 2R_20920905_SNP [dm6]	G	A	7.183e^-4	0.904	INTRON Rx	TF binding site mE1_TFBS_cnc
2R	13284210	2R_13284210_SNP [dm3] 2R_17396705_SNP [dm6]	A	T	7.186e^-4	0.904	INTRON Sip1	TF binding site BDTNP1_TFBS_dl
3L	6491343	3L_6491343_SNP [dm3] 3L_6498243_SNP [dm6]	T	G	7.186e^-4	0.904	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6491354	3L_6491354_DEL [dm3] 3L_6498254_DEL [dm6]	CC	C	7.186e^-4	0.904	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18230549	3R_18230549_SNP [dm3] 3R_22404827_SNP [dm6]	G	A	7.196e^-4	0.904	SYNONYMOUS_CODING CG13856
X	20214430	X_20214430_SNP [dm3] X_20343403_SNP [dm6]	G	A	7.196e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	20794581	3L_20794581_SNP [dm3] 3L_20801481_SNP [dm6]	T	G	7.200e^-4	0.904	INTRON Spc105R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14753477	3L_14753477_SNP [dm3] 3L_14760377_SNP [dm6]	C	G	7.248e^-4	0.904	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	5074820	3L_5074820_SNP [dm3] 3L_5074820_SNP [dm6]	A	C	7.248e^-4	0.904	INTRON Con
2L	14523004	2L_14523004_SNP [dm3] 2L_14523004_SNP [dm6]	T	C	7.285e^-4	0.904	INTERGENIC
3L	12874885	3L_12874885_SNP [dm3] 3L_12881785_SNP [dm6]	T	A	7.301e^-4	0.904	INTERGENIC
2L	11320523	2L_11320523_SNP [dm3] 2L_11320523_SNP [dm6]	A	G	7.309e^-4	0.904	INTERGENIC
3L	20253272	3L_20253272_SNP [dm3] 3L_20260172_SNP [dm6]	A	G	7.325e^-4	0.904	UTR_5_PRIME rdgC INTRON rdgC
X	21357364	X_21357364_SNP [dm3] X_21486337_SNP [dm6]	C	A	7.338e^-4	0.904	INTERGENIC
X	10194409	X_10194409_SNP [dm3] X_10300376_SNP [dm6]	T	C	7.352e^-4	0.904	INTRON alpha-Man-I
X	10194425	X_10194425_SNP [dm3] X_10300392_SNP [dm6]	A	T	7.352e^-4	0.904	INTRON alpha-Man-I
3L	3280327	3L_3280327_SNP [dm3] 3L_3280327_SNP [dm6]	A	C	7.352e^-4	0.904	UTR_5_PRIME CG12017
2L	8575177	2L_8575177_SNP [dm3] 2L_8575177_SNP [dm6]	C	T	7.375e^-4	0.904	INTRON Sema-1a
2L	8923287	2L_8923287_SNP [dm3] 2L_8923287_SNP [dm6]	C	T	7.375e^-4	0.904	NON_SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3211924	3L_3211924_SNP [dm3] 3L_3211924_SNP [dm6]	T	C	7.393e^-4	0.904	SYNONYMOUS_CODING CG14967 DOWNSTREAM gry	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3212734	3L_3212734_SNP [dm3] 3L_3212734_SNP [dm6]	T	C	7.393e^-4	0.904	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3212740	3L_3212740_SNP [dm3] 3L_3212740_SNP [dm6]	C	G	7.393e^-4	0.904	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4418963	3L_4418963_SNP [dm3] 3L_4418963_SNP [dm6]	C	G	7.416e^-4	0.904	SYNONYMOUS_CODING DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	786661	2R_786661_SNP [dm3] 2R_4899156_SNP [dm6]	T	C	7.432e^-4	0.904	INTRON CG44102	transposable element FlyBase
X	2944114	X_2944114_SNP [dm3] X_3050081_SNP [dm6]	A	T	7.450e^-4	0.904	INTRON kirre
X	2944126	X_2944126_SNP [dm3] X_3050093_SNP [dm6]	A	C	7.450e^-4	0.904	INTRON kirre
3L	9733173	3L_9733173_SNP [dm3] 3L_9740073_SNP [dm6]	A	G	7.457e^-4	0.904	UPSTREAM CG42268 INTRON CG42268
2R	14626514	2R_14626514_SNP [dm3] 2R_18739009_SNP [dm6]	C	T	7.458e^-4	0.904	UTR_3_PRIME CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
2R	14673106	2R_14673106_SNP [dm3] 2R_18785601_SNP [dm6]	A	T	7.458e^-4	0.904	INTRON CG15080	enhancer mE1_CBP_Enhancers
X	5809204	X_5809204_SNP [dm3] X_5915171_SNP [dm6]	A	C	7.458e^-4	0.904	START_GAINED CG3011 UTR_5_PRIME CG3011 DOWNSTREAM CR44108 INTRON CG3011
2R	7888933	2R_7888933_SNP [dm3] 2R_12001428_SNP [dm6]	C	T	7.462e^-4	0.904	DOWNSTREAM otk INTERGENIC
2L	6307625	2L_6307625_SNP [dm3] 2L_6307625_SNP [dm6]	T	A	7.464e^-4	0.904	DOWNSTREAM CG43922 INTRON Ddr
2L	6307637	2L_6307637_SNP [dm3] 2L_6307637_SNP [dm6]	A	T	7.464e^-4	0.904	DOWNSTREAM CG43922 INTRON Ddr
2L	6307650	2L_6307650_SNP [dm3] 2L_6307650_SNP [dm6]	A	T	7.464e^-4	0.904	DOWNSTREAM CG43922 INTRON Ddr
2L	6308318	2L_6308318_SNP [dm3] 2L_6308318_SNP [dm6]	T	G	7.464e^-4	0.904	UPSTREAM CG13984 DOWNSTREAM CG43922 INTRON Ddr
2L	3649142	2L_3649142_SNP [dm3] 2L_3649142_SNP [dm6]	A	C	7.477e^-4	0.904	INTRON for
3L	13351216	3L_13351216_SNP [dm3] 3L_13358116_SNP [dm6]	T	G	7.479e^-4	0.904	DOWNSTREAM Nplp2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13351229	3L_13351229_SNP [dm3] 3L_13358129_SNP [dm6]	G	C	7.479e^-4	0.904	DOWNSTREAM Nplp2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12874893	3L_12874893_SNP [dm3] 3L_12881793_SNP [dm6]	G	T	7.481e^-4	0.904	INTERGENIC
3L	12874896	3L_12874896_SNP [dm3] 3L_12881796_SNP [dm6]	T	A	7.481e^-4	0.904	INTERGENIC
3L	12874930	3L_12874930_SNP [dm3] 3L_12881830_SNP [dm6]	G	A	7.481e^-4	0.904	INTERGENIC
3L	8071616	3L_8071616_SNP [dm3] 3L_8078516_SNP [dm6]	G	A	7.486e^-4	0.904	INTRON Ect4	TF binding site mE1_TFBS_Kr
2L	6478796	2L_6478796_SNP [dm3] 2L_6478796_SNP [dm6]	A	G	7.501e^-4	0.904	SYNONYMOUS_CODING Sec61alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	8434848	2L_8434848_SNP [dm3] 2L_8434848_SNP [dm6]	A	G	7.501e^-4	0.904	SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8434855	2L_8434855_SNP [dm3] 2L_8434855_SNP [dm6]	A	C	7.501e^-4	0.904	NON_SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9628405	3L_9628405_SNP [dm3] 3L_9635305_SNP [dm6]	G	A	7.505e^-4	0.904	SYNONYMOUS_CODING fry
X	15404042	X_15404042_SNP [dm3] X_15510009_SNP [dm6]	A	G	7.505e^-4	0.904	DOWNSTREAM mir-304 & 2 others INTRON Gmap	TF binding site mE1_TFBS_cad
2L	15815025	2L_15815025_SNP [dm3] 2L_15815025_SNP [dm6]	C	A	7.568e^-4	0.904	INTERGENIC
3L	5884425	3L_5884425_SNP [dm3] 3L_5891325_SNP [dm6]	A	G	7.572e^-4	0.904	INTERGENIC
2L	9741923	2L_9741923_SNP [dm3] 2L_9741923_SNP [dm6]	A	T	7.576e^-4	0.904	INTRON Nckx30C
2L	9741968	2L_9741968_SNP [dm3] 2L_9741968_SNP [dm6]	T	A	7.576e^-4	0.904	INTRON Nckx30C
2L	9742234	2L_9742234_DEL [dm3] 2L_9742234_DEL [dm6]	CT	C	7.576e^-4	0.904	INTRON Nckx30C
2L	9743371	2L_9743371_SNP [dm3] 2L_9743371_SNP [dm6]	A	T	7.576e^-4	0.904	UTR_5_PRIME Nckx30C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9744297	2L_9744297_SNP [dm3] 2L_9744297_SNP [dm6]	C	T	7.576e^-4	0.904	INTRON Nckx30C
2L	9744668	2L_9744668_SNP [dm3] 2L_9744668_SNP [dm6]	C	T	7.576e^-4	0.904	INTRON Nckx30C
2L	9712536	2L_9712536_INS [dm3] 2L_9712536_INS [dm6]	T	TTT	7.613e^-4	0.904	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C
2R	9496643	2R_9496643_SNP [dm3] 2R_13609138_SNP [dm6]	A	G	7.626e^-4	0.904	UTR_5_PRIME CG12464
3L	6988798	3L_6988798_SNP [dm3] 3L_6995698_SNP [dm6]	A	C	7.626e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13022942	2L_13022942_SNP [dm3] 2L_13022942_SNP [dm6]	G	A	7.627e^-4	0.904	UTR_3_PRIME CG9932
2R	8531231	2R_8531231_SNP [dm3] 2R_12643726_SNP [dm6]	C	A	7.630e^-4	0.904	INTRON CG8785
2L	5149610	2L_5149610_SNP [dm3] 2L_5149610_SNP [dm6]	G	T	7.654e^-4	0.904	INTRON Msp300
3R	14923470	3R_14923470_SNP [dm3] 3R_19097748_SNP [dm6]	A	T	7.656e^-4	0.904	INTRON CG6040
2L	8889165	2L_8889165_SNP [dm3] 2L_8889165_SNP [dm6]	T	C	7.666e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2R	15452746	2R_15452746_SNP [dm3] 2R_19565241_SNP [dm6]	G	T	7.684e^-4	0.904	UPSTREAM tRNA:CR33535 INTRON sm
3L	2387607	3L_2387607_SNP [dm3] 3L_2387607_SNP [dm6]	G	C	7.739e^-4	0.904	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	20238640	3L_20238640_SNP [dm3] 3L_20245540_SNP [dm6]	G	A	7.746e^-4	0.904	DOWNSTREAM CG6951 INTERGENIC
2R	18077655	2R_18077655_SNP [dm3] 2R_22190150_SNP [dm6]	G	A	7.761e^-4	0.904	UTR_3_PRIME Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
3R	23997199	3R_23997199_SNP [dm3] 3R_28171477_SNP [dm6]	C	G	7.790e^-4	0.904	INTRON CG34354
3R	23997207	3R_23997207_SNP [dm3] 3R_28171485_SNP [dm6]	T	C	7.790e^-4	0.904	INTRON CG34354
2R	1091503	2R_1091503_SNP [dm3] 2R_5203998_SNP [dm6]	C	A	7.806e^-4	0.904	SPLICE_SITE_REGION Nipped-A INTRON Nipped-A
3R	16609024	3R_16609024_SNP [dm3] 3R_20783302_SNP [dm6]	T	A	7.831e^-4	0.904	UTR_5_PRIME Syp INTRON Syp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5885930	3L_5885930_SNP [dm3] 3L_5892830_SNP [dm6]	G	C	7.832e^-4	0.904	INTERGENIC
2L	10554609	2L_10554609_DEL [dm3] 2L_10554609_DEL [dm6]	AATCCAATGCAATGCAAA...	A	7.832e^-4	0.904	INTRON Trim9	TF binding site mE1_TFBS_cad
2L	6362230	2L_6362230_DEL [dm3] 2L_6362230_DEL [dm6]	AA	A	7.844e^-4	0.904	DOWNSTREAM CR44778 INTERGENIC
2L	5624014	2L_5624014_SNP [dm3] 2L_5624014_SNP [dm6]	A	G	7.845e^-4	0.904	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5624022	2L_5624022_SNP [dm3] 2L_5624022_SNP [dm6]	A	G	7.845e^-4	0.904	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14039796	3L_14039796_SNP [dm3] 3L_14046696_SNP [dm6]	G	A	7.869e^-4	0.904	INTRON blue	TF binding site mE1_TFBS_cad
3L	20249843	3L_20249843_SNP [dm3] 3L_20256743_SNP [dm6]	T	C	7.887e^-4	0.904	INTRON rdgC	TF binding site BDTNP1_TFBS_twi
3R	12304755	3R_12304755_SNP [dm3] 3R_16479033_SNP [dm6]	C	T	7.905e^-4	0.904	SYNONYMOUS_CODING Gyc-89Db	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12304806	3R_12304806_SNP [dm3] 3R_16479084_SNP [dm6]	C	T	7.905e^-4	0.904	SYNONYMOUS_CODING Gyc-89Db	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27227766	3R_27227766_SNP [dm3] 3R_31402044_SNP [dm6]	A	G	7.916e^-4	0.904	UTR_3_PRIME CG11337 DOWNSTREAM Gcn2	TF binding site mE1_TFBS_cad
2L	17461177	2L_17461177_SNP [dm3] 2L_17461177_SNP [dm6]	A	G	7.920e^-4	0.904	UTR_3_PRIME BicD DOWNSTREAM BicD
3R	16993975	3R_16993975_SNP [dm3] 3R_21168253_SNP [dm6]	A	G	7.924e^-4	0.904	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	17085189	3R_17085189_SNP [dm3] 3R_21259467_SNP [dm6]	A	G	7.924e^-4	0.904	SPLICE_SITE_REGION ETHR INTRON ETHR	TF binding site mE1_TFBS_cad
3R	18932486	3R_18932486_SNP [dm3] 3R_23106764_SNP [dm6]	T	C	7.924e^-4	0.904	INTRON CG13830
3R	18932505	3R_18932505_SNP [dm3] 3R_23106783_SNP [dm6]	A	C	7.924e^-4	0.904	INTRON CG13830
3R	18932552	3R_18932552_SNP [dm3] 3R_23106830_SNP [dm6]	C	T	7.924e^-4	0.904	INTRON CG13830
3R	25222294	3R_25222294_SNP [dm3] 3R_29396572_SNP [dm6]	C	T	7.924e^-4	0.904	INTRON Ptp99A
2R	7489846	2R_7489846_SNP [dm3] 2R_11602341_SNP [dm6]	T	C	7.932e^-4	0.904	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	15957598	2L_15957598_SNP [dm3] 2L_15957598_SNP [dm6]	A	G	7.949e^-4	0.904	UPSTREAM CG18063 INTRON beat-Ib
2L	15957599	2L_15957599_SNP [dm3] 2L_15957599_SNP [dm6]	C	T	7.949e^-4	0.904	UPSTREAM CG18063 INTRON beat-Ib
3L	1137043	3L_1137043_SNP [dm3] 3L_1137043_SNP [dm6]	T	C	7.955e^-4	0.904	INTERGENIC
3R	15186275	3R_15186275_SNP [dm3] 3R_19360553_SNP [dm6]	C	T	7.962e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10847078	3L_10847078_SNP [dm3] 3L_10853978_SNP [dm6]	C	T	7.979e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13162698	X_13162698_SNP [dm3] X_13268665_SNP [dm6]	G	A	7.988e^-4	0.904	INTRON HDAC4
3R	18261114	3R_18261114_SNP [dm3] 3R_22435392_SNP [dm6]	A	G	7.995e^-4	0.904	INTRON CG13847
2R	9915155	2R_9915155_INS [dm3] 2R_14027650_INS [dm6]	A	AC	7.999e^-4	0.904	UPSTREAM CG18371 INTRON mam
2L	19014846	2L_19014846_INS [dm3] 2L_19014846_INS [dm6]	G	GG	8.002e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18681148	3R_18681148_SNP [dm3] 3R_22855426_SNP [dm6]	T	G	8.024e^-4	0.904	INTERGENIC
2R	14405614	2R_14405614_SNP [dm3] 2R_18518109_SNP [dm6]	T	C	8.034e^-4	0.904	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17370034	3R_17370034_SNP [dm3] 3R_21544312_SNP [dm6]	C	T	8.038e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	14348667	X_14348667_SNP [dm3] X_14454634_SNP [dm6]	A	G	8.051e^-4	0.904	INTRON dpr8
3L	17790871	3L_17790871_SNP [dm3] 3L_17797771_SNP [dm6]	T	A	8.062e^-4	0.904	UTR_3_PRIME NUCB1 UPSTREAM CG42816	TF binding site BDTNP1_TFBS_sna
2L	8146763	2L_8146763_SNP [dm3] 2L_8146763_SNP [dm6]	C	T	8.064e^-4	0.904	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8874359	2L_8874359_MNP [dm3] 2L_8874359_MNP [dm6]	AAG	TTA	8.064e^-4	0.904	INTERGENIC
2L	8874364	2L_8874364_INS [dm3] 2L_8874364_INS [dm6]	G	GAGG	8.064e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8874805	2L_8874805_SNP [dm3] 2L_8874805_SNP [dm6]	C	T	8.064e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14218397	2L_14218397_SNP [dm3] 2L_14218397_SNP [dm6]	A	G	8.080e^-4	0.904	INTRON Dyrk2
3R	8563571	3R_8563571_SNP [dm3] 3R_12737849_SNP [dm6]	T	A	8.094e^-4	0.904	INTERGENIC
3R	8563572	3R_8563572_SNP [dm3] 3R_12737850_SNP [dm6]	A	T	8.094e^-4	0.904	INTERGENIC
2R	13684308	2R_13684308_SNP [dm3] 2R_17796803_SNP [dm6]	G	A	8.097e^-4	0.904	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13684310	2R_13684310_SNP [dm3] 2R_17796805_SNP [dm6]	T	C	8.097e^-4	0.904	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13988044	2R_13988044_SNP [dm3] 2R_18100539_SNP [dm6]	G	A	8.097e^-4	0.904	UTR_3_PRIME CG5098 DOWNSTREAM CG5756
2R	16874380	2R_16874380_SNP [dm3] 2R_20986875_SNP [dm6]	A	G	8.097e^-4	0.904	SYNONYMOUS_CODING CG3216 UPSTREAM CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13578966	2L_13578966_INS [dm3] 2L_13578966_INS [dm6]	T	TA	8.158e^-4	0.904	INTRON kuz
2L	13578981	2L_13578981_SNP [dm3] 2L_13578981_SNP [dm6]	G	A	8.158e^-4	0.904	INTRON kuz
3R	25915628	3R_25915628_DEL [dm3] 3R_30089906_DEL [dm6]	CTCCTCCTCTT...	C	8.176e^-4	0.904	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25915643	3R_25915643_SNP [dm3] 3R_30089921_SNP [dm6]	C	A	8.176e^-4	0.904	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25915654	3R_25915654_SNP [dm3] 3R_30089932_SNP [dm6]	A	C	8.176e^-4	0.904	INTRON sima	TF binding site mE1_TFBS_Trl
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	8.179e^-4	0.904	INTRON bbg
2L	17432623	2L_17432623_SNP [dm3] 2L_17432623_SNP [dm6]	A	G	8.199e^-4	0.904	INTRON Dif
2R	8605489	2R_8605489_SNP [dm3] 2R_12717984_SNP [dm6]	G	T	8.204e^-4	0.904	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	7165915	2L_7165915_SNP [dm3] 2L_7165915_SNP [dm6]	A	G	8.221e^-4	0.904	INTERGENIC
2L	7165930	2L_7165930_SNP [dm3] 2L_7165930_SNP [dm6]	A	G	8.221e^-4	0.904	INTERGENIC
3L	6987942	3L_6987942_INS [dm3] 3L_6994842_INS [dm6]	T	TT	8.225e^-4	0.904	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6987961	3L_6987961_SNP [dm3] 3L_6994861_SNP [dm6]	C	G	8.225e^-4	0.904	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14310376	3R_14310376_SNP [dm3] 3R_18484654_SNP [dm6]	C	T	8.225e^-4	0.904	INTRON fru
3R	14310378	3R_14310378_SNP [dm3] 3R_18484656_SNP [dm6]	G	T	8.225e^-4	0.904	INTRON fru
3L	4044230	3L_4044230_SNP [dm3] 3L_4044230_SNP [dm6]	C	A	8.233e^-4	0.904	INTERGENIC
X	14295747	X_14295747_SNP [dm3] X_14401714_SNP [dm6]	G	C	8.236e^-4	0.904	INTRON dpr8
2R	15683613	2R_15683613_SNP [dm3] 2R_19796108_SNP [dm6]	G	C	8.241e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15683614	2R_15683614_SNP [dm3] 2R_19796109_SNP [dm6]	T	C	8.241e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8172879	X_8172879_SNP [dm3] X_8278846_SNP [dm6]	A	G	8.241e^-4	0.904	UTR_3_PRIME nAChRalpha3
2L	9959408	2L_9959408_SNP [dm3] 2L_9959408_SNP [dm6]	G	A	8.260e^-4	0.904	UTR_3_PRIME CG5850 DOWNSTREAM CG4658 INTRON CG4658 EXON CR44872
2R	6985115	2R_6985115_INS [dm3] 2R_11097610_INS [dm6]	GG	CAA	8.330e^-4	0.904	INTRON luna
3R	18730772	3R_18730772_SNP [dm3] 3R_22905050_SNP [dm6]	A	G	8.356e^-4	0.904	INTRON klg
2R	15025544	2R_15025544_SNP [dm3] 2R_19138039_SNP [dm6]	G	T	8.359e^-4	0.904	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6527620	3L_6527620_SNP [dm3] 3L_6534520_SNP [dm6]	A	T	8.359e^-4	0.904	SYNONYMOUS_CODING sfl
3L	6527818	3L_6527818_SNP [dm3] 3L_6534718_SNP [dm6]	C	T	8.359e^-4	0.904	INTRON sfl
X	9084092	X_9084092_SNP [dm3] X_9190059_SNP [dm6]	G	A	8.359e^-4	0.904	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	9084132	X_9084132_DEL [dm3] X_9190099_DEL [dm6]	CACT	C	8.359e^-4	0.904	DOWNSTREAM mei-P26
X	9084362	X_9084362_SNP [dm3] X_9190329_SNP [dm6]	A	G	8.359e^-4	0.904	INTRON CG12115
X	18283683	X_18283683_SNP [dm3] X_18389650_SNP [dm6]	G	T	8.374e^-4	0.904	NON_SYNONYMOUS_CODING Tsf1 DOWNSTREAM CG32549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	20562757	3L_20562757_SNP [dm3] 3L_20569657_SNP [dm6]	T	A	8.377e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26447045	3R_26447045_SNP [dm3] 3R_30621323_SNP [dm6]	A	G	8.383e^-4	0.904	INTRON CG44954
X	3545319	X_3545319_SNP [dm3] X_3651286_SNP [dm6]	T	A	8.405e^-4	0.904	INTRON AstA-R1
3L	1131633	3L_1131633_SNP [dm3] 3L_1131633_SNP [dm6]	G	T	8.411e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
3R	17006231	3R_17006231_DEL [dm3] 3R_21180509_DEL [dm6]	AG	A	8.411e^-4	0.904	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17006234	3R_17006234_SNP [dm3] 3R_21180512_SNP [dm6]	C	A	8.411e^-4	0.904	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17006236	3R_17006236_SNP [dm3] 3R_21180514_SNP [dm6]	T	A	8.411e^-4	0.904	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20031466	3R_20031466_SNP [dm3] 3R_24205744_SNP [dm6]	A	G	8.411e^-4	0.904	INTRON twin
3R	18285394	3R_18285394_SNP [dm3] 3R_22459672_SNP [dm6]	A	C	8.421e^-4	0.904	DOWNSTREAM CG34376 & 1 other INTRON CG34376
3R	27095112	3R_27095112_SNP [dm3] 3R_31269390_SNP [dm6]	G	A	8.442e^-4	0.904	DOWNSTREAM ppk24 INTERGENIC
3L	6051650	3L_6051650_SNP [dm3] 3L_6058550_SNP [dm6]	A	G	8.453e^-4	0.904	UPSTREAM CR45441 INTERGENIC
3R	12566806	3R_12566806_SNP [dm3] 3R_16741084_SNP [dm6]	C	A	8.465e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6567734	3L_6567734_SNP [dm3] 3L_6574634_SNP [dm6]	A	T	8.481e^-4	0.904	INTRON CG18769 & 1 other
X	21118555	X_21118555_SNP [dm3] X_21247528_SNP [dm6]	A	C	8.481e^-4	0.904	INTRON CG32521
3L	10778514	3L_10778514_SNP [dm3] 3L_10785414_SNP [dm6]	A	T	8.518e^-4	0.904	DOWNSTREAM CR44544 INTERGENIC
X	12007982	X_12007982_SNP [dm3] X_12113949_SNP [dm6]	T	A	8.522e^-4	0.904	DOWNSTREAM CG2750 INTRON CR43960 & 1 other
2L	7018385	2L_7018385_SNP [dm3] 2L_7018385_SNP [dm6]	G	C	8.528e^-4	0.904	INTRON ade3	TF binding site mE1_TFBS_chinmo
2L	7018387	2L_7018387_SNP [dm3] 2L_7018387_SNP [dm6]	T	C	8.528e^-4	0.904	INTRON ade3	TF binding site mE1_TFBS_chinmo
3L	7300210	3L_7300210_SNP [dm3] 3L_7307110_SNP [dm6]	G	T	8.543e^-4	0.904	INTRON unc-13-4A
3L	18093661	3L_18093661_SNP [dm3] 3L_18100561_SNP [dm6]	C	T	8.544e^-4	0.904	INTRON CG13698
3R	16010828	3R_16010828_SNP [dm3] 3R_20185106_SNP [dm6]	C	G	8.567e^-4	0.904	INTERGENIC
X	21176385	X_21176385_SNP [dm3] X_21305358_SNP [dm6]	C	T	8.588e^-4	0.904	UPSTREAM tRNA:CR32520 DOWNSTREAM tRNA:CR32525 INTRON CG1718
X	21176419	X_21176419_SNP [dm3] X_21305392_SNP [dm6]	G	A	8.588e^-4	0.904	UPSTREAM tRNA:CR32520 DOWNSTREAM tRNA:CR32525 INTRON CG1718
3L	17797981	3L_17797981_INS [dm3] 3L_17804881_INS [dm6]	A	GTGTATCC	8.625e^-4	0.904	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
X	16496867	X_16496867_SNP [dm3] X_16602834_SNP [dm6]	A	G	8.636e^-4	0.904	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
3L	18093654	3L_18093654_SNP [dm3] 3L_18100554_SNP [dm6]	T	G	8.641e^-4	0.904	INTRON CG13698
3L	18093659	3L_18093659_SNP [dm3] 3L_18100559_SNP [dm6]	T	C	8.641e^-4	0.904	INTRON CG13698
3L	18093663	3L_18093663_SNP [dm3] 3L_18100563_SNP [dm6]	T	G	8.641e^-4	0.904	INTRON CG13698
X	17040143	X_17040143_SNP [dm3] X_17146110_SNP [dm6]	C	T	8.641e^-4	0.904	UPSTREAM snoRNA:Psi18S-1854c & 4 others DOWNSTREAM snoRNA:Psi28S-1135c & 2 others INTRON RpS5a EXON snoRNA:Psi28S-1135d
X	19869939	X_19869939_SNP [dm3] X_19975906_SNP [dm6]	C	T	8.642e^-4	0.904	INTERGENIC
2L	6357181	2L_6357181_SNP [dm3] 2L_6357181_SNP [dm6]	G	T	8.686e^-4	0.904	UTR_3_PRIME CG9500 DOWNSTREAM ppk14	TF binding site mE1_TFBS_bab1
2L	6357245	2L_6357245_SNP [dm3] 2L_6357245_SNP [dm6]	T	C	8.686e^-4	0.904	UTR_3_PRIME CG9500 DOWNSTREAM ppk14	TF binding site mE1_TFBS_bab1
2L	11456256	2L_11456256_SNP [dm3] 2L_11456256_SNP [dm6]	A	G	8.747e^-4	0.904	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13643307	2L_13643307_SNP [dm3] 2L_13643307_SNP [dm6]	T	G	8.781e^-4	0.904	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
2L	9736400	2L_9736400_SNP [dm3] 2L_9736400_SNP [dm6]	C	T	8.802e^-4	0.904	UPSTREAM CG13117 INTRON Nckx30C
3R	12304375	3R_12304375_INS [dm3] 3R_16478653_INS [dm6]	T	TTT	8.846e^-4	0.904	INTRON Gyc-89Db	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12304377	3R_12304377_INS [dm3] 3R_16478655_INS [dm6]	C	CCCG	8.846e^-4	0.904	INTRON Gyc-89Db	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13825681	2L_13825681_INS [dm3] 2L_13825681_INS [dm6]	T	TT	8.858e^-4	0.904	SPLICE_SITE_REGION tam INTRON tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13825701	2L_13825701_SNP [dm3] 2L_13825701_SNP [dm6]	A	G	8.858e^-4	0.904	INTRON tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13825707	2L_13825707_SNP [dm3] 2L_13825707_SNP [dm6]	A	T	8.858e^-4	0.904	INTRON tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8061430	3L_8061430_SNP [dm3] 3L_8068330_SNP [dm6]	G	A	8.859e^-4	0.904	UPSTREAM tRNA:CR32363 DOWNSTREAM CG42590 INTRON Ect4
3R	11789276	3R_11789276_SNP [dm3] 3R_15963554_SNP [dm6]	G	A	8.876e^-4	0.904	UPSTREAM CG5516 INTRON CG4287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9368503	2L_9368503_SNP [dm3] 2L_9368503_SNP [dm6]	C	T	8.885e^-4	0.904	DOWNSTREAM CG34181 INTERGENIC
3R	18681146	3R_18681146_SNP [dm3] 3R_22855424_SNP [dm6]	C	T	8.902e^-4	0.904	INTERGENIC
2L	2166044	2L_2166044_SNP [dm3] 2L_2166044_SNP [dm6]	A	G	8.915e^-4	0.904	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	1612292	X_1612292_DEL [dm3] X_1718259_DEL [dm6]	TCG	A	8.920e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1730815	2R_1730815_SNP [dm3] 2R_5843310_SNP [dm6]	T	C	8.924e^-4	0.904	INTRON dpr12
2R	9612549	2R_9612549_SNP [dm3] 2R_13725044_SNP [dm6]	G	A	8.955e^-4	0.904	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25915660	3R_25915660_SNP [dm3] 3R_30089938_SNP [dm6]	G	C	8.963e^-4	0.904	INTRON sima	TF binding site mE1_TFBS_Trl
2R	14849413	2R_14849413_SNP [dm3] 2R_18961908_SNP [dm6]	A	T	8.985e^-4	0.904	INTERGENIC
2R	15073461	2R_15073461_SNP [dm3] 2R_19185956_SNP [dm6]	T	C	8.985e^-4	0.904	INTRON hppy
3R	8949811	3R_8949811_SNP [dm3] 3R_13124089_SNP [dm6]	T	A	8.992e^-4	0.904	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3L	11438926	3L_11438926_SNP [dm3] 3L_11445826_SNP [dm6]	G	A	9.004e^-4	0.904	SYNONYMOUS_CODING CG7557 UPSTREAM CR44549	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7467081	3L_7467081_SNP [dm3] 3L_7473981_SNP [dm6]	A	G	9.009e^-4	0.904	INTERGENIC
2L	7434800	2L_7434800_SNP [dm3] 2L_7434800_SNP [dm6]	C	T	9.011e^-4	0.904	INTERGENIC
2L	9737283	2L_9737283_SNP [dm3] 2L_9737283_SNP [dm6]	C	T	9.011e^-4	0.904	UTR_3_PRIME CG13117 INTRON Nckx30C
2L	15551136	2L_15551136_SNP [dm3] 2L_15551136_SNP [dm6]	T	G	9.042e^-4	0.904	UTR_3_PRIME CG15256 DOWNSTREAM CR45728
3R	13417777	3R_13417777_SNP [dm3] 3R_17592055_SNP [dm6]	A	G	9.053e^-4	0.904	INTERGENIC
3L	6737757	3L_6737757_SNP [dm3] 3L_6744657_SNP [dm6]	G	A	9.077e^-4	0.904	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	5445924	2L_5445924_SNP [dm3] 2L_5445924_SNP [dm6]	A	G	9.086e^-4	0.904	INTERGENIC
2L	9736772	2L_9736772_SNP [dm3] 2L_9736772_SNP [dm6]	T	C	9.113e^-4	0.904	SYNONYMOUS_CODING CG13117 INTRON Nckx30C
3R	17986748	3R_17986748_SNP [dm3] 3R_22161026_SNP [dm6]	G	T	9.116e^-4	0.904	INTRON SKIP
3R	16660427	3R_16660427_SNP [dm3] 3R_20834705_SNP [dm6]	G	A	9.117e^-4	0.904	INTRON Synd	TF binding site BDTNP1_TFBS_dl
3R	27380443	3R_27380443_SNP [dm3] 3R_31554721_SNP [dm6]	G	A	9.132e^-4	0.904	INTRON nyo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19271798	2R_19271798_SNP [dm3] 2R_23384275_SNP [dm6]	C	T	9.136e^-4	0.904	NON_SYNONYMOUS_CODING CG30414 UPSTREAM CG13551 DOWNSTREAM CR44784	TF binding site mE1_TFBS_chinmo
3R	20442528	3R_20442528_SNP [dm3] 3R_24616806_SNP [dm6]	A	G	9.138e^-4	0.904	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20086853	3L_20086853_SNP [dm3] 3L_20093753_SNP [dm6]	A	G	9.146e^-4	0.904	INTERGENIC
2R	17507948	2R_17507948_SNP [dm3] 2R_21620443_SNP [dm6]	T	C	9.157e^-4	0.904	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17508698	2R_17508698_SNP [dm3] 2R_21621193_SNP [dm6]	T	G	9.157e^-4	0.904	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8829904	X_8829904_SNP [dm3] X_8935871_SNP [dm6]	T	A	9.157e^-4	0.904	INTRON rdgA
2L	3334075	2L_3334075_SNP [dm3] 2L_3334075_SNP [dm6]	C	G	9.201e^-4	0.904	NON_SYNONYMOUS_CODING CG15408 DOWNSTREAM E23	TF binding site mE1_TFBS_cad
3L	17711959	3L_17711959_SNP [dm3] 3L_17718859_SNP [dm6]	C	T	9.217e^-4	0.904	DOWNSTREAM CheB74a INTRON Ccn
3R	26484926	3R_26484926_SNP [dm3] 3R_30659204_SNP [dm6]	G	A	9.289e^-4	0.904	INTERGENIC
2L	7098158	2L_7098158_SNP [dm3] 2L_7098158_SNP [dm6]	C	T	9.308e^-4	0.904	DOWNSTREAM Pvf3 INTERGENIC
2R	18750038	2R_18750038_DEL [dm3] 2R_22862515_DEL [dm6]	TTT	A	9.316e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12874939	3L_12874939_SNP [dm3] 3L_12881839_SNP [dm6]	T	C	9.347e^-4	0.904	INTERGENIC

By genomic position
Variant impact
Gene name

DADifference phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results