DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.218e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

910 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3178812	3L_3178812_INS [dm3] 3L_3178812_INS [dm6]	G	AAAAAA	7.069e^-6	0.948	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3178846	3L_3178846_SNP [dm3] 3L_3178846_SNP [dm6]	T	A	7.069e^-6	0.948	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	15888696	X_15888696_SNP [dm3] X_15994663_SNP [dm6]	A	G	8.727e^-6	0.948	INTRON exd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17727386	X_17727386_SNP [dm3] X_17833353_SNP [dm6]	C	A	9.693e^-6	0.948	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
3R	4905271	3R_4905271_SNP [dm3] 3R_9079549_SNP [dm6]	C	A	1.165e^-5	0.948	INTRON pum
X	2831946	X_2831946_SNP [dm3] X_2937913_SNP [dm6]	G	A	1.245e^-5	0.948	SYNONYMOUS_CODING CG3598 UPSTREAM CG14420 INTRON kirre
3L	3179264	3L_3179264_SNP [dm3] 3L_3179264_SNP [dm6]	A	G	1.467e^-5	0.948	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17728100	X_17728100_SNP [dm3] X_17834067_SNP [dm6]	C	T	1.914e^-5	0.948	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	4099086	X_4099086_SNP [dm3] X_4205053_SNP [dm6]	C	T	1.914e^-5	0.948	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3L	3178662	3L_3178662_SNP [dm3] 3L_3178662_SNP [dm6]	C	A	2.213e^-5	0.948	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4905273	3R_4905273_SNP [dm3] 3R_9079551_SNP [dm6]	G	T	2.486e^-5	0.948	INTRON pum
3R	4905278	3R_4905278_SNP [dm3] 3R_9079556_SNP [dm6]	T	C	2.486e^-5	0.948	INTRON pum
3R	4905280	3R_4905280_SNP [dm3] 3R_9079558_SNP [dm6]	T	G	2.486e^-5	0.948	INTRON pum
3R	4905296	3R_4905296_SNP [dm3] 3R_9079574_SNP [dm6]	A	G	2.486e^-5	0.948	INTRON pum
3L	18594882	3L_18594882_SNP [dm3] 3L_18601782_SNP [dm6]	T	G	2.827e^-5	0.948	NON_SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
2R	3174379	2R_3174379_SNP [dm3] 2R_7286874_SNP [dm6]	C	A	2.834e^-5	0.948	INTRON pwn
3L	3173799	3L_3173799_SNP [dm3] 3L_3173799_SNP [dm6]	G	T	3.095e^-5	0.948	NON_SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4812700	2L_4812700_SNP [dm3] 2L_4812700_SNP [dm6]	A	C	3.306e^-5	0.948	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h
3L	15229037	3L_15229037_SNP [dm3] 3L_15235937_SNP [dm6]	G	C	3.372e^-5	0.948	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	19112145	2L_19112145_SNP [dm3] 2L_19112145_SNP [dm6]	G	A	3.415e^-5	0.948	NON_SYNONYMOUS_CODING amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3179317	3L_3179317_SNP [dm3] 3L_3179317_SNP [dm6]	C	T	3.816e^-5	0.948	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3178137	3L_3178137_SNP [dm3] 3L_3178137_SNP [dm6]	C	A	4.049e^-5	0.948	UPSTREAM Girdin INTRON CG14964	TF binding site BDTNP1_TFBS_dl
3R	18684565	3R_18684565_SNP [dm3] 3R_22858843_SNP [dm6]	T	G	4.062e^-5	0.948	INTERGENIC
3L	13351852	3L_13351852_SNP [dm3] 3L_13358752_SNP [dm6]	C	T	4.105e^-5	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10088262	2R_10088262_SNP [dm3] 2R_14200757_SNP [dm6]	G	A	4.149e^-5	0.948	UTR_5_PRIME VGAT DOWNSTREAM Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7951688	X_7951688_SNP [dm3] X_8057655_SNP [dm6]	C	T	4.154e^-5	0.948	UPSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	14324269	X_14324269_SNP [dm3] X_14430236_SNP [dm6]	T	A	4.200e^-5	0.948	INTRON dpr8
3L	3181290	3L_3181290_SNP [dm3] 3L_3181290_SNP [dm6]	G	T	4.458e^-5	0.948	NON_SYNONYMOUS_CODING Girdin
2R	14427637	2R_14427637_SNP [dm3] 2R_18540132_SNP [dm6]	G	C	4.490e^-5	0.948	UTR_5_PRIME Rgk2 DOWNSTREAM Pepck & 1 other	TF binding site mE1_TFBS_chinmo
3L	9726657	3L_9726657_INS [dm3] 3L_9733557_INS [dm6]	G	AA	4.636e^-5	0.948	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	9726673	3L_9726673_SNP [dm3] 3L_9733573_SNP [dm6]	T	C	4.636e^-5	0.948	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
X	4099096	X_4099096_SNP [dm3] X_4205063_SNP [dm6]	C	A	5.000e^-5	0.948	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3R	17882203	3R_17882203_INS [dm3] 3R_22056481_INS [dm6]	T	TAT	5.029e^-5	0.948	INTRON how
3L	1870616	3L_1870616_SNP [dm3] 3L_1870616_SNP [dm6]	G	C	5.100e^-5	0.948	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	5.302e^-5	0.948	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	3177647	3L_3177647_SNP [dm3] 3L_3177647_SNP [dm6]	T	A	5.310e^-5	0.948	SYNONYMOUS_CODING CG14964
X	15887848	X_15887848_SNP [dm3] X_15993815_SNP [dm6]	C	A	5.387e^-5	0.948	INTRON exd
X	15887867	X_15887867_SNP [dm3] X_15993834_SNP [dm6]	T	A	5.387e^-5	0.948	INTRON exd
X	15887905	X_15887905_SNP [dm3] X_15993872_SNP [dm6]	A	G	5.387e^-5	0.948	INTRON exd
X	15887907	X_15887907_SNP [dm3] X_15993874_SNP [dm6]	T	C	5.387e^-5	0.948	INTRON exd
X	15887911	X_15887911_SNP [dm3] X_15993878_SNP [dm6]	T	G	5.387e^-5	0.948	INTRON exd
X	15888744	X_15888744_SNP [dm3] X_15994711_SNP [dm6]	C	T	5.387e^-5	0.948	SYNONYMOUS_CODING exd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4222956	2L_4222956_SNP [dm3] 2L_4222956_SNP [dm6]	C	T	6.349e^-5	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13728096	2R_13728096_SNP [dm3] 2R_17840591_SNP [dm6]	C	A	6.493e^-5	0.948	INTRON grh
X	20337874	X_20337874_SNP [dm3] X_20466847_SNP [dm6]	T	C	6.587e^-5	0.948	UTR_3_PRIME CG32506 UPSTREAM GstT3 DOWNSTREAM CG32506
3L	13351836	3L_13351836_SNP [dm3] 3L_13358736_SNP [dm6]	T	G	6.814e^-5	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13351858	3L_13351858_SNP [dm3] 3L_13358758_SNP [dm6]	T	A	6.814e^-5	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19414527	X_19414527_SNP [dm3] X_19520494_SNP [dm6]	C	A	7.201e^-5	0.948	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4226977	2L_4226977_SNP [dm3] 2L_4226977_SNP [dm6]	A	C	7.262e^-5	0.948	UTR_5_PRIME CG3702 UPSTREAM RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	855962	3L_855962_SNP [dm3] 3L_855962_SNP [dm6]	C	G	7.428e^-5	0.948	INTRON dpr20
3L	855963	3L_855963_SNP [dm3] 3L_855963_SNP [dm6]	A	C	7.428e^-5	0.948	INTRON dpr20
3L	855969	3L_855969_SNP [dm3] 3L_855969_SNP [dm6]	A	C	7.428e^-5	0.948	INTRON dpr20
X	5252796	X_5252796_SNP [dm3] X_5358763_SNP [dm6]	A	T	7.708e^-5	0.948	INTRON SK
2R	10962841	2R_10962841_SNP [dm3] 2R_15075336_SNP [dm6]	C	G	7.828e^-5	0.948	INTERGENIC
X	19868563	X_19868563_INS [dm3] X_19974530_INS [dm6]	A	ACACAGTGT	8.229e^-5	0.948	INTERGENIC
2R	16702805	2R_16702805_DEL [dm3] 2R_20815300_DEL [dm6]	ACTTAACTT	A	8.554e^-5	0.948	INTERGENIC
2R	16702836	2R_16702836_SNP [dm3] 2R_20815331_SNP [dm6]	T	A	8.554e^-5	0.948	INTERGENIC
2L	8484977	2L_8484977_SNP [dm3] 2L_8484977_SNP [dm6]	C	G	8.937e^-5	0.948	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo
2L	8485232	2L_8485232_SNP [dm3] 2L_8485232_SNP [dm6]	T	G	8.937e^-5	0.948	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8485304	2L_8485304_SNP [dm3] 2L_8485304_SNP [dm6]	G	T	8.937e^-5	0.948	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8485412	2L_8485412_SNP [dm3] 2L_8485412_SNP [dm6]	A	C	8.937e^-5	0.948	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo
2L	8485526	2L_8485526_SNP [dm3] 2L_8485526_SNP [dm6]	C	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485535	2L_8485535_SNP [dm3] 2L_8485535_SNP [dm6]	A	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485546	2L_8485546_SNP [dm3] 2L_8485546_SNP [dm6]	G	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485549	2L_8485549_SNP [dm3] 2L_8485549_SNP [dm6]	G	A	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485561	2L_8485561_SNP [dm3] 2L_8485561_SNP [dm6]	C	A	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485573	2L_8485573_SNP [dm3] 2L_8485573_SNP [dm6]	T	A	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485592	2L_8485592_SNP [dm3] 2L_8485592_SNP [dm6]	T	C	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485610	2L_8485610_SNP [dm3] 2L_8485610_SNP [dm6]	A	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485629	2L_8485629_SNP [dm3] 2L_8485629_SNP [dm6]	C	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485644	2L_8485644_SNP [dm3] 2L_8485644_SNP [dm6]	A	T	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485649	2L_8485649_SNP [dm3] 2L_8485649_SNP [dm6]	C	A	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485724	2L_8485724_SNP [dm3] 2L_8485724_SNP [dm6]	T	C	8.937e^-5	0.948	UPSTREAM unsRNA:d-a INTRON d
2L	8485991	2L_8485991_SNP [dm3] 2L_8485991_SNP [dm6]	T	A	8.937e^-5	0.948	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486002	2L_8486002_DEL [dm3] 2L_8486002_DEL [dm6]	TC	T	8.937e^-5	0.948	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486009	2L_8486009_SNP [dm3] 2L_8486009_SNP [dm6]	T	A	8.937e^-5	0.948	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486126	2L_8486126_SNP [dm3] 2L_8486126_SNP [dm6]	C	T	8.937e^-5	0.948	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486177	2L_8486177_SNP [dm3] 2L_8486177_SNP [dm6]	T	C	8.937e^-5	0.948	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4877667	X_4877667_SNP [dm3] X_4983634_SNP [dm6]	G	A	8.942e^-5	0.948	INTRON CR44833	regulatory region REDfly_CRMs
X	4877751	X_4877751_SNP [dm3] X_4983718_SNP [dm6]	A	G	8.942e^-5	0.948	INTRON CR44833	regulatory region REDfly_CRMs
2L	3301249	2L_3301249_SNP [dm3] 2L_3301249_SNP [dm6]	T	G	9.225e^-5	0.948	NON_SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3260094	2L_3260094_SNP [dm3] 2L_3260094_SNP [dm6]	A	G	9.962e^-5	0.948	DOWNSTREAM CR45337 INTERGENIC
2R	12478014	2R_12478014_SNP [dm3] 2R_16590509_SNP [dm6]	C	G	9.990e^-5	0.948	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
3R	4905303	3R_4905303_DEL [dm3] 3R_9079581_DEL [dm6]	ATATGCCA	A	9.991e^-5	0.948	INTRON pum
3R	4905320	3R_4905320_SNP [dm3] 3R_9079598_SNP [dm6]	T	A	9.991e^-5	0.948	INTRON pum
2R	12968500	2R_12968500_SNP [dm3] 2R_17080995_SNP [dm6]	A	T	1.008e^-4	0.948	INTRON CG30460
2R	12968503	2R_12968503_SNP [dm3] 2R_17080998_SNP [dm6]	T	A	1.008e^-4	0.948	INTRON CG30460
2R	12968515	2R_12968515_SNP [dm3] 2R_17081010_SNP [dm6]	A	G	1.008e^-4	0.948	INTRON CG30460
2R	12968528	2R_12968528_SNP [dm3] 2R_17081023_SNP [dm6]	T	C	1.008e^-4	0.948	INTRON CG30460
2L	13705071	2L_13705071_SNP [dm3] 2L_13705071_SNP [dm6]	A	T	1.032e^-4	0.948	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	16229998	2R_16229998_SNP [dm3] 2R_20342493_SNP [dm6]	T	A	1.055e^-4	0.948	INTRON CG16739
2R	16230018	2R_16230018_SNP [dm3] 2R_20342513_SNP [dm6]	G	T	1.055e^-4	0.948	SPLICE_SITE_REGION CG16739 SYNONYMOUS_CODING CG16739
X	19414662	X_19414662_SNP [dm3] X_19520629_SNP [dm6]	C	A	1.055e^-4	0.948	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10253187	2L_10253187_SNP [dm3] 2L_10253187_SNP [dm6]	A	G	1.068e^-4	0.948	SYNONYMOUS_CODING Ror
3R	4905328	3R_4905328_SNP [dm3] 3R_9079606_SNP [dm6]	T	G	1.077e^-4	0.948	INTRON pum
3R	4905329	3R_4905329_SNP [dm3] 3R_9079607_SNP [dm6]	T	C	1.077e^-4	0.948	INTRON pum
2R	16701450	2R_16701450_SNP [dm3] 2R_20813945_SNP [dm6]	G	C	1.078e^-4	0.948	INTERGENIC
2R	16701877	2R_16701877_SNP [dm3] 2R_20814372_SNP [dm6]	G	A	1.078e^-4	0.948	INTERGENIC
X	4877676	X_4877676_SNP [dm3] X_4983643_SNP [dm6]	G	A	1.084e^-4	0.948	INTRON CR44833	regulatory region REDfly_CRMs
2R	14318431	2R_14318431_INS [dm3] 2R_18430926_INS [dm6]	A	AATTTGAGAA	1.095e^-4	0.948	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
X	7951007	X_7951007_SNP [dm3] X_8056974_SNP [dm6]	T	A	1.153e^-4	0.948	UPSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	6249661	X_6249661_SNP [dm3] X_6355628_SNP [dm6]	C	T	1.164e^-4	0.948	INTRON kdn
2R	9961920	2R_9961920_SNP [dm3] 2R_14074415_SNP [dm6]	C	T	1.182e^-4	0.948	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	565858	2L_565858_SNP [dm3] 2L_565858_SNP [dm6]	T	C	1.202e^-4	0.948	SYNONYMOUS_CODING CG2794 DOWNSTREAM Nle	TF binding site mE1_TFBS_sens
X	5252912	X_5252912_SNP [dm3] X_5358879_SNP [dm6]	C	T	1.224e^-4	0.948	INTRON SK
X	5252914	X_5252914_SNP [dm3] X_5358881_SNP [dm6]	G	A	1.224e^-4	0.948	INTRON SK
X	14385448	X_14385448_SNP [dm3] X_14491415_SNP [dm6]	C	T	1.224e^-4	0.948	INTERGENIC
3L	18599126	3L_18599126_SNP [dm3] 3L_18606026_SNP [dm6]	C	G	1.225e^-4	0.948	NON_SYNONYMOUS_CODING CG18233 DOWNSTREAM CG18234 INTRON CG4174 & 1 other
2L	8485611	2L_8485611_SNP [dm3] 2L_8485611_SNP [dm6]	A	T	1.322e^-4	0.948	UPSTREAM unsRNA:d-a INTRON d
3L	19192725	3L_19192725_SNP [dm3] 3L_19199625_SNP [dm6]	T	A	1.326e^-4	0.948	INTRON fz2
3R	15154301	3R_15154301_SNP [dm3] 3R_19328579_SNP [dm6]	A	G	1.331e^-4	0.948	INTERGENIC
X	21436223	X_21436223_SNP [dm3] X_21565196_SNP [dm6]	C	T	1.346e^-4	0.948	INTERGENIC	transposable element FlyBase
3L	19206293	3L_19206293_SNP [dm3] 3L_19213193_SNP [dm6]	C	T	1.371e^-4	0.948	INTRON fz2
3R	9336699	3R_9336699_SNP [dm3] 3R_13510977_SNP [dm6]	G	C	1.376e^-4	0.948	INTERGENIC
3R	9336701	3R_9336701_SNP [dm3] 3R_13510979_SNP [dm6]	A	G	1.376e^-4	0.948	INTERGENIC
X	8421538	X_8421538_SNP [dm3] X_8527505_SNP [dm6]	T	C	1.379e^-4	0.948	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	1.385e^-4	0.948	INTRON pum
X	6476934	X_6476934_SNP [dm3] X_6582901_SNP [dm6]	A	C	1.385e^-4	0.948	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10259136	2R_10259136_SNP [dm3] 2R_14371631_SNP [dm6]	C	T	1.498e^-4	0.948	NON_SYNONYMOUS_CODING Obp50b UTR_5_PRIME Obp50c UPSTREAM Obp50a
2R	13595164	2R_13595164_SNP [dm3] 2R_17707659_SNP [dm6]	T	C	1.498e^-4	0.948	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16051355	2R_16051355_DEL [dm3] 2R_20163850_DEL [dm6]	GTATA	G	1.498e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	4239899	2L_4239899_SNP [dm3] 2L_4239899_SNP [dm6]	C	T	1.517e^-4	0.948	DOWNSTREAM CR45720 INTERGENIC
2L	8633112	2L_8633112_SNP [dm3] 2L_8633112_SNP [dm6]	C	T	1.528e^-4	0.948	INTRON Sema-1a
3R	4905998	3R_4905998_SNP [dm3] 3R_9080276_SNP [dm6]	C	G	1.529e^-4	0.948	INTRON pum
3R	4906007	3R_4906007_SNP [dm3] 3R_9080285_SNP [dm6]	C	T	1.529e^-4	0.948	INTRON pum
2R	16062091	2R_16062091_SNP [dm3] 2R_20174586_SNP [dm6]	A	G	1.530e^-4	0.948	INTERGENIC
2R	16062112	2R_16062112_SNP [dm3] 2R_20174607_SNP [dm6]	C	T	1.530e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9726569	3L_9726569_SNP [dm3] 3L_9733469_SNP [dm6]	T	C	1.566e^-4	0.948	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3R	19501760	3R_19501760_SNP [dm3] 3R_23676038_SNP [dm6]	C	T	1.644e^-4	0.948	INTERGENIC
X	17727605	X_17727605_SNP [dm3] X_17833572_SNP [dm6]	G	A	1.648e^-4	0.948	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	1.659e^-4	0.948	INTRON Mob2
3R	23008074	3R_23008074_SNP [dm3] 3R_27182352_SNP [dm6]	C	T	1.662e^-4	0.948	INTRON Ser
3R	14996979	3R_14996979_SNP [dm3] 3R_19171257_SNP [dm6]	T	C	1.685e^-4	0.948	DOWNSTREAM sqz INTERGENIC
3L	15051940	3L_15051940_SNP [dm3] 3L_15058840_SNP [dm6]	T	G	1.694e^-4	0.948	INTRON Sytbeta
2L	18983860	2L_18983860_INS [dm3] 2L_18983860_INS [dm6]	T	TTGACTT	1.694e^-4	0.948	INTRON Swip-1
2R	18082686	2R_18082686_SNP [dm3] 2R_22195181_SNP [dm6]	A	G	1.726e^-4	0.948	INTRON Swim
2L	16450248	2L_16450248_SNP [dm3] 2L_16450248_SNP [dm6]	A	G	1.737e^-4	0.948	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3L	17202666	3L_17202666_SNP [dm3] 3L_17209566_SNP [dm6]	T	G	1.741e^-4	0.948	INTRON Rbp6
2R	17576276	2R_17576276_SNP [dm3] 2R_21688771_SNP [dm6]	T	C	1.755e^-4	0.948	UPSTREAM CG10307 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17576277	2R_17576277_SNP [dm3] 2R_21688772_SNP [dm6]	C	T	1.755e^-4	0.948	UPSTREAM CG10307 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18599124	3L_18599124_SNP [dm3] 3L_18606024_SNP [dm6]	G	T	1.760e^-4	0.948	NON_SYNONYMOUS_CODING CG18233 DOWNSTREAM CG18234 INTRON CG4174 & 1 other
3L	7450420	3L_7450420_SNP [dm3] 3L_7457320_SNP [dm6]	T	C	1.760e^-4	0.948	SYNONYMOUS_CODING ppk26
3L	7450423	3L_7450423_SNP [dm3] 3L_7457323_SNP [dm6]	C	T	1.760e^-4	0.948	SYNONYMOUS_CODING ppk26
3L	18597854	3L_18597854_SNP [dm3] 3L_18604754_SNP [dm6]	G	A	1.791e^-4	0.948	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
3L	9719888	3L_9719888_SNP [dm3] 3L_9726788_SNP [dm6]	A	T	1.791e^-4	0.948	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8191697	2L_8191697_SNP [dm3] 2L_8191697_SNP [dm6]	A	G	1.870e^-4	0.948	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475 UPSTREAM CG34134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9748923	3L_9748923_SNP [dm3] 3L_9755823_SNP [dm6]	A	G	1.916e^-4	0.948	INTRON CG42268
2R	19505428	2R_19505428_SNP [dm3] 2R_23617905_SNP [dm6]	T	G	1.920e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_D
3L	5072766	3L_5072766_INS [dm3] 3L_5072766_INS [dm6]	C	CT	1.920e^-4	0.948	INTRON Con
3L	5072769	3L_5072769_SNP [dm3] 3L_5072769_SNP [dm6]	C	G	1.920e^-4	0.948	INTRON Con
2L	8486078	2L_8486078_SNP [dm3] 2L_8486078_SNP [dm6]	T	C	1.935e^-4	0.948	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486228	2L_8486228_SNP [dm3] 2L_8486228_SNP [dm6]	T	C	1.935e^-4	0.948	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12662701	3R_12662701_SNP [dm3] 3R_16836979_SNP [dm6]	T	C	1.940e^-4	0.948	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18376308	3L_18376308_SNP [dm3] 3L_18383208_SNP [dm6]	C	G	1.989e^-4	0.948	INTERGENIC
X	17647483	X_17647483_SNP [dm3] X_17753450_SNP [dm6]	T	G	1.994e^-4	0.948	INTERGENIC
2R	9199357	2R_9199357_SNP [dm3] 2R_13311852_SNP [dm6]	C	A	2.021e^-4	0.948	INTERGENIC
2L	15822257	2L_15822257_SNP [dm3] 2L_15822257_SNP [dm6]	A	G	2.044e^-4	0.948	DOWNSTREAM CR44601 INTERGENIC
2L	4239948	2L_4239948_SNP [dm3] 2L_4239948_SNP [dm6]	A	G	2.052e^-4	0.948	DOWNSTREAM CR45720 INTERGENIC
3R	17394087	3R_17394087_SNP [dm3] 3R_21568365_SNP [dm6]	C	T	2.053e^-4	0.948	SYNONYMOUS_CODING CG15498
2L	6154041	2L_6154041_SNP [dm3] 2L_6154041_SNP [dm6]	A	T	2.058e^-4	0.948	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_HSA
2L	6154281	2L_6154281_SNP [dm3] 2L_6154281_SNP [dm6]	G	A	2.058e^-4	0.948	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8841783	X_8841783_SNP [dm3] X_8947750_SNP [dm6]	A	G	2.072e^-4	0.948	INTRON rdgA
2L	7463298	2L_7463298_SNP [dm3] 2L_7463298_SNP [dm6]	G	A	2.073e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7573223	3L_7573223_SNP [dm3] 3L_7580123_SNP [dm6]	T	C	2.082e^-4	0.948	INTERGENIC
3L	7573249	3L_7573249_SNP [dm3] 3L_7580149_SNP [dm6]	T	G	2.082e^-4	0.948	INTERGENIC
3L	7573356	3L_7573356_DEL [dm3] 3L_7580256_DEL [dm6]	TAAGT	T	2.082e^-4	0.948	INTERGENIC
3L	7573361	3L_7573361_INS [dm3] 3L_7580261_INS [dm6]	G	GAAAGGCA	2.082e^-4	0.948	INTERGENIC
3L	7573363	3L_7573363_SNP [dm3] 3L_7580263_SNP [dm6]	C	T	2.082e^-4	0.948	INTERGENIC
X	5978342	X_5978342_SNP [dm3] X_6084309_SNP [dm6]	A	C	2.086e^-4	0.948	SYNONYMOUS_CODING Mipp2 UTR_3_PRIME raptor
X	9227982	X_9227982_SNP [dm3] X_9333949_SNP [dm6]	T	A	2.094e^-4	0.948	INTRON CG34449
3L	1870253	3L_1870253_SNP [dm3] 3L_1870253_SNP [dm6]	G	C	2.114e^-4	0.948	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1870358	3L_1870358_SNP [dm3] 3L_1870358_SNP [dm6]	G	A	2.114e^-4	0.948	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4111883	3L_4111883_SNP [dm3] 3L_4111883_SNP [dm6]	C	T	2.152e^-4	0.948	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15161083	3R_15161083_SNP [dm3] 3R_19335361_SNP [dm6]	A	G	2.187e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6959612	3R_6959612_SNP [dm3] 3R_11133890_SNP [dm6]	A	C	2.187e^-4	0.948	INTERGENIC
3R	13828062	3R_13828062_SNP [dm3] 3R_18002340_SNP [dm6]	A	T	2.220e^-4	0.948	INTRON cpo
3R	18988897	3R_18988897_SNP [dm3] 3R_23163175_SNP [dm6]	T	A	2.242e^-4	0.948	INTERGENIC
X	14084942	X_14084942_SNP [dm3] X_14190909_SNP [dm6]	T	C	2.273e^-4	0.948	DOWNSTREAM CG13403 & 1 other INTERGENIC
X	17727667	X_17727667_SNP [dm3] X_17833634_SNP [dm6]	T	C	2.279e^-4	0.948	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7514768	2L_7514768_SNP [dm3] 2L_7514768_SNP [dm6]	C	T	2.283e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514771	2L_7514771_SNP [dm3] 2L_7514771_SNP [dm6]	C	T	2.283e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514806	2L_7514806_SNP [dm3] 2L_7514806_SNP [dm6]	A	T	2.283e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514825	2L_7514825_SNP [dm3] 2L_7514825_SNP [dm6]	T	G	2.283e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515722	2L_7515722_SNP [dm3] 2L_7515722_SNP [dm6]	G	T	2.283e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
2L	12088940	2L_12088940_INS [dm3] 2L_12088940_INS [dm6]	T	TACAATT	2.292e^-4	0.948	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17243079	2R_17243079_SNP [dm3] 2R_21355574_SNP [dm6]	T	C	2.292e^-4	0.948	UTR_3_PRIME cv-2
2L	1111598	2L_1111598_SNP [dm3] 2L_1111598_SNP [dm6]	C	T	2.295e^-4	0.948	SYNONYMOUS_CODING CG14339
2R	16701445	2R_16701445_SNP [dm3] 2R_20813940_SNP [dm6]	A	C	2.300e^-4	0.948	INTERGENIC
3R	6952517	3R_6952517_SNP [dm3] 3R_11126795_SNP [dm6]	G	T	2.318e^-4	0.948	SYNONYMOUS_CODING Ugt86Dd
2R	16702978	2R_16702978_SNP [dm3] 2R_20815473_SNP [dm6]	C	T	2.321e^-4	0.948	INTERGENIC
X	2831919	X_2831919_SNP [dm3] X_2937886_SNP [dm6]	A	G	2.346e^-4	0.948	SYNONYMOUS_CODING CG3598 UPSTREAM CG14420 INTRON kirre
X	21435837	X_21435837_SNP [dm3] X_21564810_SNP [dm6]	A	T	2.378e^-4	0.948	INTERGENIC
3L	18006200	3L_18006200_DEL [dm3] 3L_18013100_DEL [dm6]	GGCCG	G	2.462e^-4	0.948	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19720688	2L_19720688_SNP [dm3] 2L_19720688_SNP [dm6]	T	C	2.469e^-4	0.948	INTRON Lar
3L	13351860	3L_13351860_SNP [dm3] 3L_13358760_SNP [dm6]	T	A	2.480e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17447763	2L_17447763_SNP [dm3] 2L_17447763_SNP [dm6]	T	C	2.485e^-4	0.948	INTRON dl
3L	3803952	3L_3803952_SNP [dm3] 3L_3803952_SNP [dm6]	C	A	2.501e^-4	0.948	UTR_3_PRIME ntc INTRON CG32264	TF binding site mE1_TFBS_cad
3L	11211810	3L_11211810_DEL [dm3] 3L_11218710_DEL [dm6]	AA	A	2.506e^-4	0.948	INTRON CG42671
3L	6900360	3L_6900360_SNP [dm3] 3L_6907260_SNP [dm6]	C	A	2.506e^-4	0.948	INTERGENIC
2L	10169818	2L_10169818_SNP [dm3] 2L_10169818_SNP [dm6]	A	G	2.509e^-4	0.948	INTRON CG44153
X	21435039	X_21435039_SNP [dm3] X_21564012_SNP [dm6]	C	T	2.518e^-4	0.948	INTERGENIC
3L	6900469	3L_6900469_SNP [dm3] 3L_6907369_SNP [dm6]	C	A	2.521e^-4	0.948	INTERGENIC
3L	1854102	3L_1854102_INS [dm3] 3L_1854102_INS [dm6]	G	GCTGGGCTTCG...	2.528e^-4	0.948	INTRON CG13936
3L	1854105	3L_1854105_SNP [dm3] 3L_1854105_SNP [dm6]	C	T	2.528e^-4	0.948	INTRON CG13936
3L	1854106	3L_1854106_SNP [dm3] 3L_1854106_SNP [dm6]	T	G	2.528e^-4	0.948	INTRON CG13936
3R	23008077	3R_23008077_SNP [dm3] 3R_27182355_SNP [dm6]	A	C	2.533e^-4	0.948	INTRON Ser
3L	10411322	3L_10411322_SNP [dm3] 3L_10418222_SNP [dm6]	C	A	2.535e^-4	0.948	INTERGENIC
2R	16229981	2R_16229981_SNP [dm3] 2R_20342476_SNP [dm6]	T	A	2.565e^-4	0.948	INTRON CG16739
3L	10133272	3L_10133272_SNP [dm3] 3L_10140172_SNP [dm6]	C	G	2.567e^-4	0.948	DOWNSTREAM dpr6 INTERGENIC
X	5978209	X_5978209_SNP [dm3] X_6084176_SNP [dm6]	A	T	2.568e^-4	0.948	INTRON Mipp2 & 1 other
X	5978702	X_5978702_SNP [dm3] X_6084669_SNP [dm6]	A	C	2.568e^-4	0.948	INTRON raptor & 1 other	TF binding site mE1_TFBS_HSA
X	5978736	X_5978736_SNP [dm3] X_6084703_SNP [dm6]	C	T	2.568e^-4	0.948	INTRON raptor & 1 other	TF binding site mE1_TFBS_HSA
3R	3002511	3R_3002511_SNP [dm3] 3R_7176789_SNP [dm6]	T	G	2.570e^-4	0.948	INTRON sas
2R	12968505	2R_12968505_SNP [dm3] 2R_17081000_SNP [dm6]	C	A	2.597e^-4	0.948	INTRON CG30460
3L	15127704	3L_15127704_SNP [dm3] 3L_15134604_SNP [dm6]	T	C	2.608e^-4	0.948	INTRON CG12316 EXON scaRNA:MeU5-U42
3L	15128059	3L_15128059_SNP [dm3] 3L_15134959_SNP [dm6]	T	G	2.608e^-4	0.948	SYNONYMOUS_CODING CG12316 UPSTREAM scaRNA:MeU5-U42
X	14909658	X_14909658_SNP [dm3] X_15015625_SNP [dm6]	A	T	2.620e^-4	0.948	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	15859782	2R_15859782_SNP [dm3] 2R_19972277_SNP [dm6]	C	T	2.655e^-4	0.948	INTERGENIC
2L	1988959	2L_1988959_SNP [dm3] 2L_1988959_SNP [dm6]	G	A	2.659e^-4	0.948	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1988963	2L_1988963_SNP [dm3] 2L_1988963_SNP [dm6]	G	A	2.659e^-4	0.948	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1989003	2L_1989003_SNP [dm3] 2L_1989003_SNP [dm6]	A	C	2.659e^-4	0.948	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1989010	2L_1989010_SNP [dm3] 2L_1989010_SNP [dm6]	A	G	2.659e^-4	0.948	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	8486250	2L_8486250_SNP [dm3] 2L_8486250_SNP [dm6]	C	T	2.668e^-4	0.948	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12136605	X_12136605_SNP [dm3] X_12242572_SNP [dm6]	G	A	2.670e^-4	0.948	INTRON Ten-a
3L	9315474	3L_9315474_SNP [dm3] 3L_9322374_SNP [dm6]	G	A	2.744e^-4	0.948	INTERGENIC
3R	26268801	3R_26268801_SNP [dm3] 3R_30443079_SNP [dm6]	T	G	2.787e^-4	0.948	DOWNSTREAM Osi23 INTRON CG15537
2R	15820114	2R_15820114_SNP [dm3] 2R_19932609_SNP [dm6]	A	C	2.796e^-4	0.948	INTERGENIC
3L	3046955	3L_3046955_SNP [dm3] 3L_3046955_SNP [dm6]	T	A	2.800e^-4	0.948	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3046973	3L_3046973_SNP [dm3] 3L_3046973_SNP [dm6]	T	G	2.800e^-4	0.948	UPSTREAM Sk2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3047597	3L_3047597_SNP [dm3] 3L_3047597_SNP [dm6]	T	G	2.800e^-4	0.948	SYNONYMOUS_CODING Sk2 UPSTREAM scramb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3047709	3L_3047709_SNP [dm3] 3L_3047709_SNP [dm6]	C	A	2.800e^-4	0.948	SYNONYMOUS_CODING Sk2 UPSTREAM scramb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3048476	3L_3048476_SNP [dm3] 3L_3048476_SNP [dm6]	T	C	2.800e^-4	0.948	INTRON Sk2
3L	3048605	3L_3048605_SNP [dm3] 3L_3048605_SNP [dm6]	T	G	2.800e^-4	0.948	INTRON Sk2	TF binding site mE1_TFBS_cad
3L	3668796	3L_3668796_SNP [dm3] 3L_3668796_SNP [dm6]	T	G	2.800e^-4	0.948	INTERGENIC
2R	12968465	2R_12968465_SNP [dm3] 2R_17080960_SNP [dm6]	T	A	2.802e^-4	0.948	INTRON CG30460
2R	12968466	2R_12968466_SNP [dm3] 2R_17080961_SNP [dm6]	T	A	2.802e^-4	0.948	INTRON CG30460
2R	12968524	2R_12968524_SNP [dm3] 2R_17081019_SNP [dm6]	T	A	2.802e^-4	0.948	INTRON CG30460
2R	10089703	2R_10089703_SNP [dm3] 2R_14202198_SNP [dm6]	C	A	2.823e^-4	0.948	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19102543	2R_19102543_SNP [dm3] 2R_23215020_SNP [dm6]	C	A	2.843e^-4	0.948	INTERGENIC
2L	4223212	2L_4223212_SNP [dm3] 2L_4223212_SNP [dm6]	A	C	2.845e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	2.854e^-4	0.948	INTRON ppk9
3L	9678702	3L_9678702_SNP [dm3] 3L_9685602_SNP [dm6]	T	G	2.873e^-4	0.948	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9678705	3L_9678705_SNP [dm3] 3L_9685605_SNP [dm6]	G	A	2.873e^-4	0.948	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9678729	3L_9678729_SNP [dm3] 3L_9685629_SNP [dm6]	A	G	2.873e^-4	0.948	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15051048	2L_15051048_SNP [dm3] 2L_15051048_SNP [dm6]	T	A	2.884e^-4	0.948	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5252892	X_5252892_SNP [dm3] X_5358859_SNP [dm6]	G	T	2.904e^-4	0.948	INTRON SK
2L	18541810	2L_18541810_SNP [dm3] 2L_18541810_SNP [dm6]	G	C	2.932e^-4	0.948	INTRON Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16825057	2R_16825057_SNP [dm3] 2R_20937552_SNP [dm6]	C	T	2.937e^-4	0.948	DOWNSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18949082	3L_18949082_SNP [dm3] 3L_18955982_SNP [dm6]	G	C	2.946e^-4	0.948	DOWNSTREAM CG6836 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6064795	3L_6064795_SNP [dm3] 3L_6071695_SNP [dm6]	A	T	2.952e^-4	0.948	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3668807	3L_3668807_SNP [dm3] 3L_3668807_SNP [dm6]	C	T	2.991e^-4	0.948	INTERGENIC
2R	16701740	2R_16701740_INS [dm3] 2R_20814235_INS [dm6]	C	CC	3.056e^-4	0.948	INTERGENIC
2L	21760437	2L_21760437_SNP [dm3] 2L_21760437_SNP [dm6]	C	A	3.088e^-4	0.948	INTRON CG1416
2L	3301226	2L_3301226_SNP [dm3] 2L_3301226_SNP [dm6]	G	A	3.106e^-4	0.948	SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15160957	3R_15160957_SNP [dm3] 3R_19335235_SNP [dm6]	T	G	3.117e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15160970	3R_15160970_SNP [dm3] 3R_19335248_SNP [dm6]	A	G	3.117e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	3.117e^-4	0.948	INTERGENIC
3L	7573234	3L_7573234_SNP [dm3] 3L_7580134_SNP [dm6]	A	C	3.140e^-4	0.948	INTERGENIC
2L	1889111	2L_1889111_SNP [dm3] 2L_1889111_SNP [dm6]	T	G	3.181e^-4	0.948	INTRON CG7337
3R	9225059	3R_9225059_SNP [dm3] 3R_13399337_SNP [dm6]	A	G	3.184e^-4	0.948	SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15820113	2R_15820113_SNP [dm3] 2R_19932608_SNP [dm6]	T	C	3.205e^-4	0.948	INTERGENIC
X	4877680	X_4877680_SNP [dm3] X_4983647_SNP [dm6]	G	A	3.209e^-4	0.948	INTRON CR44833	regulatory region REDfly_CRMs
2R	10670298	2R_10670298_SNP [dm3] 2R_14782793_SNP [dm6]	C	T	3.219e^-4	0.948	INTRON kn
2R	19347904	2R_19347904_SNP [dm3] 2R_23460381_SNP [dm6]	G	C	3.219e^-4	0.948	INTRON CG43795
2R	19347906	2R_19347906_SNP [dm3] 2R_23460383_SNP [dm6]	A	G	3.219e^-4	0.948	INTRON CG43795
3R	6958855	3R_6958855_SNP [dm3] 3R_11133133_SNP [dm6]	T	G	3.231e^-4	0.948	INTERGENIC
2L	4228231	2L_4228231_SNP [dm3] 2L_4228231_SNP [dm6]	G	A	3.245e^-4	0.948	SYNONYMOUS_CODING RpL40 UPSTREAM CR44608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	20012144	X_20012144_SNP [dm3] X_20118111_SNP [dm6]	A	G	3.245e^-4	0.948	INTERGENIC
3L	2147069	3L_2147069_SNP [dm3] 3L_2147069_SNP [dm6]	T	C	3.248e^-4	0.948	INTRON zormin
3L	3178728	3L_3178728_SNP [dm3] 3L_3178728_SNP [dm6]	G	A	3.248e^-4	0.948	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3179434	3L_3179434_SNP [dm3] 3L_3179434_SNP [dm6]	C	A	3.248e^-4	0.948	UPSTREAM CG14964 INTRON Girdin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18751565	2L_18751565_SNP [dm3] 2L_18751565_SNP [dm6]	A	T	3.259e^-4	0.948	INTERGENIC
2R	5889010	2R_5889010_SNP [dm3] 2R_10001505_SNP [dm6]	T	A	3.293e^-4	0.948	INTRON Pka-R2
2L	14530840	2L_14530840_SNP [dm3] 2L_14530840_SNP [dm6]	T	C	3.295e^-4	0.948	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	14531158	2L_14531158_DEL [dm3] 2L_14531158_DEL [dm6]	AGGGA	A	3.295e^-4	0.948	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2527226	2L_2527226_SNP [dm3] 2L_2527226_SNP [dm6]	T	C	3.304e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527235	2L_2527235_SNP [dm3] 2L_2527235_SNP [dm6]	T	G	3.304e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527260	2L_2527260_SNP [dm3] 2L_2527260_SNP [dm6]	C	T	3.304e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527270	2L_2527270_SNP [dm3] 2L_2527270_SNP [dm6]	A	T	3.304e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
X	4766301	X_4766301_SNP [dm3] X_4872268_SNP [dm6]	A	T	3.324e^-4	0.948	INTRON CG42594
X	4766330	X_4766330_SNP [dm3] X_4872297_SNP [dm6]	C	A	3.324e^-4	0.948	INTRON CG42594
X	4766341	X_4766341_SNP [dm3] X_4872308_SNP [dm6]	C	G	3.324e^-4	0.948	INTRON CG42594
X	4766371	X_4766371_SNP [dm3] X_4872338_SNP [dm6]	A	G	3.324e^-4	0.948	INTRON CG42594
3L	17244212	3L_17244212_SNP [dm3] 3L_17251112_SNP [dm6]	A	C	3.325e^-4	0.948	INTRON CR43870
3L	17244214	3L_17244214_SNP [dm3] 3L_17251114_SNP [dm6]	C	A	3.325e^-4	0.948	INTRON CR43870
3L	17244217	3L_17244217_SNP [dm3] 3L_17251117_SNP [dm6]	T	G	3.325e^-4	0.948	INTRON CR43870
3L	17244273	3L_17244273_SNP [dm3] 3L_17251173_SNP [dm6]	T	C	3.325e^-4	0.948	INTRON CR43870
X	7732800	X_7732800_SNP [dm3] X_7838767_SNP [dm6]	T	C	3.328e^-4	0.948	SYNONYMOUS_CODING CG1402
3L	12490985	3L_12490985_SNP [dm3] 3L_12497885_SNP [dm6]	C	T	3.339e^-4	0.948	UPSTREAM CG10657 & 1 other DOWNSTREAM CG10638 INTERGENIC
3L	13330187	3L_13330187_SNP [dm3] 3L_13337087_SNP [dm6]	A	C	3.344e^-4	0.948	INTERGENIC
3L	13330208	3L_13330208_SNP [dm3] 3L_13337108_SNP [dm6]	A	T	3.344e^-4	0.948	INTERGENIC
3R	24334836	3R_24334836_SNP [dm3] 3R_28509114_SNP [dm6]	C	T	3.344e^-4	0.948	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26629045	3R_26629045_SNP [dm3] 3R_30803323_SNP [dm6]	A	G	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	26629048	3R_26629048_SNP [dm3] 3R_30803326_SNP [dm6]	T	G	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	26629343	3R_26629343_SNP [dm3] 3R_30803621_SNP [dm6]	A	C	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26629425	3R_26629425_SNP [dm3] 3R_30803703_SNP [dm6]	G	A	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26629427	3R_26629427_SNP [dm3] 3R_30803705_SNP [dm6]	A	G	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26629572	3R_26629572_SNP [dm3] 3R_30803850_SNP [dm6]	T	A	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26629595	3R_26629595_SNP [dm3] 3R_30803873_SNP [dm6]	T	C	3.344e^-4	0.948	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10888255	2L_10888255_SNP [dm3] 2L_10888255_SNP [dm6]	A	T	3.360e^-4	0.948	DOWNSTREAM CG14071 INTRON CG14071
2L	4151475	2L_4151475_SNP [dm3] 2L_4151475_SNP [dm6]	G	A	3.360e^-4	0.948	DOWNSTREAM CG2955 INTERGENIC
2L	10888518	2L_10888518_SNP [dm3] 2L_10888518_SNP [dm6]	C	A	3.401e^-4	0.948	SYNONYMOUS_CODING CG14071
3R	9334638	3R_9334638_SNP [dm3] 3R_13508916_SNP [dm6]	A	T	3.409e^-4	0.948	INTERGENIC
2L	714027	2L_714027_SNP [dm3] 2L_714027_SNP [dm6]	A	G	3.422e^-4	0.948	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11717284	2R_11717284_SNP [dm3] 2R_15829779_SNP [dm6]	T	C	3.433e^-4	0.948	INTRON tun & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15731993	2R_15731993_SNP [dm3] 2R_19844488_SNP [dm6]	A	G	3.479e^-4	0.948	UPSTREAM CG44569 INTERGENIC
2R	15731994	2R_15731994_SNP [dm3] 2R_19844489_SNP [dm6]	G	A	3.479e^-4	0.948	UPSTREAM CG44569 INTERGENIC
X	21434151	X_21434151_SNP [dm3] X_21563124_SNP [dm6]	G	A	3.479e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_inv
X	21436049	X_21436049_SNP [dm3] X_21565022_SNP [dm6]	T	A	3.479e^-4	0.948	INTERGENIC
X	21436417	X_21436417_SNP [dm3] X_21565390_SNP [dm6]	G	T	3.479e^-4	0.948	INTERGENIC
X	21436450	X_21436450_SNP [dm3] X_21565423_SNP [dm6]	A	G	3.479e^-4	0.948	INTERGENIC
X	21436591	X_21436591_SNP [dm3] X_21565564_SNP [dm6]	A	C	3.479e^-4	0.948	INTERGENIC
2L	15431703	2L_15431703_SNP [dm3] 2L_15431703_SNP [dm6]	C	T	3.486e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19696478	2L_19696478_SNP [dm3] 2L_19696478_SNP [dm6]	T	G	3.491e^-4	0.948	INTRON Lar
2L	7513737	2L_7513737_SNP [dm3] 2L_7513737_SNP [dm6]	C	T	3.505e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12968520	2R_12968520_SNP [dm3] 2R_17081015_SNP [dm6]	T	A	3.537e^-4	0.948	INTRON CG30460
3L	1300257	3L_1300257_SNP [dm3] 3L_1300257_SNP [dm6]	G	A	3.552e^-4	0.948	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1300351	3L_1300351_SNP [dm3] 3L_1300351_SNP [dm6]	C	G	3.552e^-4	0.948	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7456049	3L_7456049_SNP [dm3] 3L_7462949_SNP [dm6]	C	T	3.552e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18253095	X_18253095_SNP [dm3] X_18359062_SNP [dm6]	T	C	3.553e^-4	0.948	SPLICE_SITE_REGION CG6106 INTRON CG6106	TF binding site mE1_TFBS_HSA
3L	9620434	3L_9620434_SNP [dm3] 3L_9627334_SNP [dm6]	C	A	3.563e^-4	0.948	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3L	5073331	3L_5073331_SNP [dm3] 3L_5073331_SNP [dm6]	G	A	3.577e^-4	0.948	INTRON Con
3L	6058604	3L_6058604_SNP [dm3] 3L_6065504_SNP [dm6]	T	G	3.583e^-4	0.948	UPSTREAM CG42269 INTERGENIC
3L	885430	3L_885430_SNP [dm3] 3L_885430_SNP [dm6]	G	A	3.648e^-4	0.948	INTRON CG32479
X	2477369	X_2477369_SNP [dm3] X_2583336_SNP [dm6]	T	C	3.659e^-4	0.948	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2477381	X_2477381_SNP [dm3] X_2583348_SNP [dm6]	T	C	3.659e^-4	0.948	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5253158	X_5253158_SNP [dm3] X_5359125_SNP [dm6]	T	C	3.667e^-4	0.948	INTRON SK
X	5253159	X_5253159_SNP [dm3] X_5359126_SNP [dm6]	G	A	3.667e^-4	0.948	INTRON SK
3R	23656203	3R_23656203_SNP [dm3] 3R_27830481_SNP [dm6]	T	C	3.697e^-4	0.948	INTRON CG34353
3L	2542270	3L_2542270_DEL [dm3] 3L_2542270_DEL [dm6]	AGAA	CT	3.697e^-4	0.948	INTRON Spn
3L	13406202	3L_13406202_SNP [dm3] 3L_13413102_SNP [dm6]	A	G	3.708e^-4	0.948	UPSTREAM CG10222 INTRON flr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
2R	5524712	2R_5524712_SNP [dm3] 2R_9637207_SNP [dm6]	A	G	3.711e^-4	0.948	INTRON Mmp2 EXON CR44070
3R	26585886	3R_26585886_SNP [dm3] 3R_30760164_SNP [dm6]	C	T	3.715e^-4	0.948	INTERGENIC
3R	26585918	3R_26585918_SNP [dm3] 3R_30760196_SNP [dm6]	A	T	3.715e^-4	0.948	INTERGENIC
2R	16229964	2R_16229964_SNP [dm3] 2R_20342459_SNP [dm6]	A	T	3.735e^-4	0.948	INTRON CG16739
2L	3328061	2L_3328061_SNP [dm3] 2L_3328061_SNP [dm6]	T	C	3.788e^-4	0.948	INTRON CG33282
3L	846986	3L_846986_SNP [dm3] 3L_846986_SNP [dm6]	T	C	3.788e^-4	0.948	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	846995	3L_846995_SNP [dm3] 3L_846995_SNP [dm6]	C	T	3.788e^-4	0.948	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1980874	2L_1980874_SNP [dm3] 2L_1980874_SNP [dm6]	A	T	3.828e^-4	0.948	UPSTREAM CG15362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7514835	2L_7514835_SNP [dm3] 2L_7514835_SNP [dm6]	G	C	3.828e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	17292040	2R_17292040_SNP [dm3] 2R_21404535_SNP [dm6]	T	G	3.875e^-4	0.948	INTRON Sdc
3L	10458410	3L_10458410_SNP [dm3] 3L_10465310_SNP [dm6]	C	A	3.883e^-4	0.948	UTR_5_PRIME S-Lap3 DOWNSTREAM CG32061
2R	9917237	2R_9917237_SNP [dm3] 2R_14029732_SNP [dm6]	A	G	3.897e^-4	0.948	DOWNSTREAM CG18371 INTRON mam
2R	14214842	2R_14214842_SNP [dm3] 2R_18327337_SNP [dm6]	G	A	3.929e^-4	0.948	INTRON sbb
2R	14318278	2R_14318278_SNP [dm3] 2R_18430773_SNP [dm6]	T	C	4.124e^-4	0.948	UTR_3_PRIME CG30118 DOWNSTREAM CG12263
2R	15534452	2R_15534452_SNP [dm3] 2R_19646947_SNP [dm6]	A	T	4.124e^-4	0.948	SYNONYMOUS_CODING CG15905	TF binding site mE1_TFBS_cad
2R	19794807	2R_19794807_SNP [dm3] 2R_23907284_SNP [dm6]	G	A	4.164e^-4	0.948	UTR_5_PRIME Nap1 UPSTREAM kcc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9620465	3L_9620465_SNP [dm3] 3L_9627365_SNP [dm6]	A	G	4.196e^-4	0.948	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3L	9620469	3L_9620469_SNP [dm3] 3L_9627369_SNP [dm6]	G	T	4.196e^-4	0.948	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3R	18658172	3R_18658172_SNP [dm3] 3R_22832450_SNP [dm6]	A	T	4.277e^-4	0.948	INTERGENIC
3R	14904671	3R_14904671_SNP [dm3] 3R_19078949_SNP [dm6]	G	A	4.289e^-4	0.948	INTRON cdi
2L	3300912	2L_3300912_SNP [dm3] 2L_3300912_SNP [dm6]	T	G	4.307e^-4	0.948	INTRON CG9663
3R	18684468	3R_18684468_SNP [dm3] 3R_22858746_SNP [dm6]	A	G	4.307e^-4	0.948	INTERGENIC
3L	18008981	3L_18008981_SNP [dm3] 3L_18015881_SNP [dm6]	A	G	4.347e^-4	0.948	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6321973	X_6321973_SNP [dm3] X_6427940_SNP [dm6]	G	T	4.366e^-4	0.948	INTRON CG42340
3L	15228799	3L_15228799_SNP [dm3] 3L_15235699_SNP [dm6]	T	C	4.375e^-4	0.948	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	15614079	2L_15614079_SNP [dm3] 2L_15614079_SNP [dm6]	A	T	4.378e^-4	0.948	SYNONYMOUS_CODING CG15254 UPSTREAM CG11864
2L	15094942	2L_15094942_SNP [dm3] 2L_15094942_SNP [dm6]	C	T	4.389e^-4	0.948	SYNONYMOUS_CODING CG15270
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	4.396e^-4	0.948	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	3177753	3L_3177753_SNP [dm3] 3L_3177753_SNP [dm6]	A	T	4.429e^-4	0.948	INTRON CG14964
X	6097915	X_6097915_SNP [dm3] X_6203882_SNP [dm6]	A	C	4.562e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_inv
X	6097941	X_6097941_SNP [dm3] X_6203908_SNP [dm6]	T	A	4.562e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_inv
4	222361	4_222361_SNP [dm3] 4_201735_SNP [dm6]	A	T	4.563e^-4	0.948	INTRON CG31998
3R	17074667	3R_17074667_SNP [dm3] 3R_21248945_SNP [dm6]	A	T	4.589e^-4	0.948	INTRON ETHR
3L	1493284	3L_1493284_SNP [dm3] 3L_1493284_SNP [dm6]	A	C	4.593e^-4	0.948	INTRON CG12084	TF binding site mE1_TFBS_cad
X	1146474	X_1146474_SNP [dm3] X_1252441_SNP [dm6]	A	C	4.621e^-4	0.948	INTRON Atf3
X	16908028	X_16908028_SNP [dm3] X_17013995_SNP [dm6]	C	T	4.623e^-4	0.948	INTRON CG45002
2R	12993472	2R_12993472_SNP [dm3] 2R_17105967_SNP [dm6]	C	T	4.627e^-4	0.948	SYNONYMOUS_CODING CG30456
2R	16701846	2R_16701846_SNP [dm3] 2R_20814341_SNP [dm6]	G	T	4.632e^-4	0.948	INTERGENIC
2R	18754493	2R_18754493_SNP [dm3] 2R_22866970_SNP [dm6]	T	C	4.640e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18754513	2R_18754513_SNP [dm3] 2R_22866990_SNP [dm6]	T	C	4.640e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16902151	X_16902151_SNP [dm3] X_17008118_SNP [dm6]	G	A	4.640e^-4	0.948	INTRON CG45002
2L	6933648	2L_6933648_SNP [dm3] 2L_6933648_SNP [dm6]	A	G	4.646e^-4	0.948	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9513873	2L_9513873_SNP [dm3] 2L_9513873_SNP [dm6]	C	A	4.663e^-4	0.948	INTRON CG33298
3L	3175838	3L_3175838_SNP [dm3] 3L_3175838_SNP [dm6]	C	T	4.673e^-4	0.948	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
2L	10888296	2L_10888296_SNP [dm3] 2L_10888296_SNP [dm6]	T	G	4.682e^-4	0.948	UTR_3_PRIME CG14071
3L	17929828	3L_17929828_SNP [dm3] 3L_17936728_SNP [dm6]	C	A	4.702e^-4	0.948	INTRON CG43174
3L	11120643	3L_11120643_SNP [dm3] 3L_11127543_SNP [dm6]	T	G	4.707e^-4	0.948	INTRON CG42575
3R	17756568	3R_17756568_SNP [dm3] 3R_21930846_SNP [dm6]	G	A	4.747e^-4	0.948	INTERGENIC
3L	8354507	3L_8354507_DEL [dm3] 3L_8361407_DEL [dm6]	CATGTTCC	T	4.749e^-4	0.948	UPSTREAM Idh INTERGENIC
3L	18594840	3L_18594840_SNP [dm3] 3L_18601740_SNP [dm6]	A	G	4.761e^-4	0.948	SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
X	21349464	X_21349464_SNP [dm3] X_21478437_SNP [dm6]	A	C	4.765e^-4	0.948	NON_SYNONYMOUS_CODING Ir20a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7573245	3L_7573245_SNP [dm3] 3L_7580145_SNP [dm6]	T	A	4.772e^-4	0.948	INTERGENIC
3L	11304738	3L_11304738_SNP [dm3] 3L_11311638_SNP [dm6]	A	G	4.782e^-4	0.948	UPSTREAM CG7573 INTERGENIC
X	4766298	X_4766298_SNP [dm3] X_4872265_SNP [dm6]	T	C	4.799e^-4	0.948	INTRON CG42594
3L	8558210	3L_8558210_SNP [dm3] 3L_8565110_SNP [dm6]	A	G	4.812e^-4	0.948	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25402113	3R_25402113_SNP [dm3] 3R_29576391_SNP [dm6]	G	T	4.812e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
3R	22583111	3R_22583111_SNP [dm3] 3R_26757389_SNP [dm6]	G	T	4.821e^-4	0.948	EXON CR45562
2R	16697637	2R_16697637_SNP [dm3] 2R_20810132_SNP [dm6]	C	T	4.825e^-4	0.948	INTERGENIC
2R	16698542	2R_16698542_SNP [dm3] 2R_20811037_SNP [dm6]	C	T	4.825e^-4	0.948	INTERGENIC
2R	16698548	2R_16698548_SNP [dm3] 2R_20811043_SNP [dm6]	C	T	4.825e^-4	0.948	INTERGENIC
2R	16698550	2R_16698550_SNP [dm3] 2R_20811045_SNP [dm6]	A	G	4.825e^-4	0.948	INTERGENIC
2R	16700202	2R_16700202_SNP [dm3] 2R_20812697_SNP [dm6]	C	T	4.825e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700236	2R_16700236_SNP [dm3] 2R_20812731_SNP [dm6]	T	C	4.825e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700266	2R_16700266_SNP [dm3] 2R_20812761_SNP [dm6]	A	T	4.825e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700869	2R_16700869_SNP [dm3] 2R_20813364_SNP [dm6]	T	C	4.825e^-4	0.948	INTERGENIC
2R	16703770	2R_16703770_SNP [dm3] 2R_20816265_SNP [dm6]	A	G	4.825e^-4	0.948	INTERGENIC
2R	16704614	2R_16704614_SNP [dm3] 2R_20817109_SNP [dm6]	C	T	4.825e^-4	0.948	INTERGENIC
2R	16704654	2R_16704654_SNP [dm3] 2R_20817149_SNP [dm6]	C	G	4.825e^-4	0.948	INTERGENIC
2R	16705624	2R_16705624_SNP [dm3] 2R_20818119_SNP [dm6]	T	C	4.825e^-4	0.948	INTERGENIC
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	4.827e^-4	0.948	UPSTREAM CG12003 INTRON CG7879
X	12141617	X_12141617_SNP [dm3] X_12247584_SNP [dm6]	C	T	4.871e^-4	0.948	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	12263021	3R_12263021_SNP [dm3] 3R_16437299_SNP [dm6]	C	G	4.876e^-4	0.948	SYNONYMOUS_CODING ema UPSTREAM mRpS33
2R	3648857	2R_3648857_SNP [dm3] 2R_7761352_SNP [dm6]	T	A	4.888e^-4	0.948	INTRON CG30497 & 1 other
X	5252908	X_5252908_SNP [dm3] X_5358875_SNP [dm6]	T	C	4.904e^-4	0.948	INTRON SK
2L	10717993	2L_10717993_SNP [dm3] 2L_10717993_SNP [dm6]	G	T	4.905e^-4	0.948	INTERGENIC
2L	10718000	2L_10718000_SNP [dm3] 2L_10718000_SNP [dm6]	G	T	4.905e^-4	0.948	INTERGENIC
X	8972832	X_8972832_SNP [dm3] X_9078799_SNP [dm6]	A	T	4.915e^-4	0.948	UPSTREAM CG44325 DOWNSTREAM CG7246 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	21437471	X_21437471_SNP [dm3] X_21566444_SNP [dm6]	T	C	4.926e^-4	0.948	INTERGENIC
X	21429964	X_21429964_SNP [dm3] X_21558937_SNP [dm6]	C	T	4.932e^-4	0.948	INTERGENIC
X	14901091	X_14901091_SNP [dm3] X_15007058_SNP [dm6]	A	G	4.955e^-4	0.948	UTR_3_PRIME eag
3R	24334043	3R_24334043_SNP [dm3] 3R_28508321_SNP [dm6]	C	T	4.993e^-4	0.948	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	8485551	2L_8485551_SNP [dm3] 2L_8485551_SNP [dm6]	G	A	5.027e^-4	0.948	UPSTREAM unsRNA:d-a INTRON d
3L	1029657	3L_1029657_SNP [dm3] 3L_1029657_SNP [dm6]	T	C	5.064e^-4	0.948	INTRON trio	TF binding site mE1_TFBS_cad
X	2561375	X_2561375_SNP [dm3] X_2667342_SNP [dm6]	G	A	5.064e^-4	0.948	UPSTREAM sgg INTRON sgg
X	4410553	X_4410553_SNP [dm3] X_4516520_SNP [dm6]	G	T	5.064e^-4	0.948	INTRON CR32773
X	4410555	X_4410555_SNP [dm3] X_4516522_SNP [dm6]	A	T	5.064e^-4	0.948	INTRON CR32773
X	7330867	X_7330867_SNP [dm3] X_7436834_SNP [dm6]	C	A	5.064e^-4	0.948	INTERGENIC
X	7330880	X_7330880_SNP [dm3] X_7436847_SNP [dm6]	G	A	5.064e^-4	0.948	INTERGENIC
X	7330884	X_7330884_SNP [dm3] X_7436851_SNP [dm6]	C	T	5.064e^-4	0.948	INTERGENIC
X	7330892	X_7330892_DEL [dm3] X_7436859_DEL [dm6]	ATGTATCAG	A	5.064e^-4	0.948	INTERGENIC
X	7330904	X_7330904_MNP [dm3] X_7436871_MNP [dm6]	TAA	GTT	5.064e^-4	0.948	INTERGENIC
X	7330909	X_7330909_SNP [dm3] X_7436876_SNP [dm6]	A	T	5.064e^-4	0.948	INTERGENIC
X	7330910	X_7330910_DEL [dm3] X_7436877_DEL [dm6]	AA	A	5.064e^-4	0.948	INTERGENIC
X	7330916	X_7330916_SNP [dm3] X_7436883_SNP [dm6]	G	C	5.064e^-4	0.948	INTERGENIC
X	7330918	X_7330918_SNP [dm3] X_7436885_SNP [dm6]	T	C	5.064e^-4	0.948	INTERGENIC
X	7330919	X_7330919_SNP [dm3] X_7436886_SNP [dm6]	T	C	5.064e^-4	0.948	INTERGENIC
X	7330931	X_7330931_SNP [dm3] X_7436898_SNP [dm6]	T	A	5.064e^-4	0.948	INTERGENIC
X	7330963	X_7330963_SNP [dm3] X_7436930_SNP [dm6]	C	T	5.064e^-4	0.948	INTERGENIC
X	7330978	X_7330978_SNP [dm3] X_7436945_SNP [dm6]	T	A	5.064e^-4	0.948	INTERGENIC
X	7330987	X_7330987_SNP [dm3] X_7436954_SNP [dm6]	C	G	5.064e^-4	0.948	INTERGENIC
2R	19347889	2R_19347889_SNP [dm3] 2R_23460366_SNP [dm6]	A	G	5.082e^-4	0.948	INTRON CG43795
3L	15128439	3L_15128439_DEL [dm3] 3L_15135339_DEL [dm6]	ATT	C	5.082e^-4	0.948	UPSTREAM scaRNA:MeU5-U42 INTRON CG12316
2R	10588038	2R_10588038_SNP [dm3] 2R_14700533_SNP [dm6]	T	A	5.106e^-4	0.948	INTRON mspo
3R	26576194	3R_26576194_SNP [dm3] 3R_30750472_SNP [dm6]	C	T	5.114e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6977601	2L_6977601_SNP [dm3] 2L_6977601_SNP [dm6]	A	G	5.118e^-4	0.948	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13068958	3L_13068958_SNP [dm3] 3L_13075858_SNP [dm6]	A	T	5.153e^-4	0.948	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
3R	6958966	3R_6958966_SNP [dm3] 3R_11133244_SNP [dm6]	G	A	5.165e^-4	0.948	INTERGENIC
X	9746356	X_9746356_INS [dm3] X_9852323_INS [dm6]	A	AA	5.170e^-4	0.948	UTR_3_PRIME CG32698
3L	4112250	3L_4112250_SNP [dm3] 3L_4112250_SNP [dm6]	C	G	5.180e^-4	0.948	NON_SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16341560	3L_16341560_SNP [dm3] 3L_16348460_SNP [dm6]	G	A	5.188e^-4	0.948	SYNONYMOUS_CODING mRpS34 DOWNSTREAM CG33257 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19389831	2R_19389831_SNP [dm3] 2R_23502308_SNP [dm6]	T	C	5.205e^-4	0.948	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2L	2526184	2L_2526184_SNP [dm3] 2L_2526184_SNP [dm6]	T	G	5.210e^-4	0.948	INTERGENIC
3R	27175849	3R_27175849_DEL [dm3] 3R_31350127_DEL [dm6]	CC	C	5.223e^-4	0.948	INTRON CG34347
2L	8441041	2L_8441041_SNP [dm3] 2L_8441041_SNP [dm6]	T	A	5.248e^-4	0.948	SYNONYMOUS_CODING mus201
2R	4074998	2R_4074998_SNP [dm3] 2R_8187493_SNP [dm6]	C	A	5.286e^-4	0.948	INTRON LRP1
2L	7521634	2L_7521634_SNP [dm3] 2L_7521634_SNP [dm6]	T	C	5.296e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17864096	2L_17864096_SNP [dm3] 2L_17864096_SNP [dm6]	C	T	5.299e^-4	0.948	UTR_5_PRIME CadN2
3L	10396524	3L_10396524_SNP [dm3] 3L_10403424_SNP [dm6]	T	A	5.301e^-4	0.948	INTERGENIC
3R	24334031	3R_24334031_SNP [dm3] 3R_28508309_SNP [dm6]	G	A	5.301e^-4	0.948	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
2L	5955986	2L_5955986_SNP [dm3] 2L_5955986_SNP [dm6]	G	T	5.334e^-4	0.948	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	5955989	2L_5955989_SNP [dm3] 2L_5955989_SNP [dm6]	G	T	5.334e^-4	0.948	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	5958205	2L_5958205_SNP [dm3] 2L_5958205_SNP [dm6]	A	T	5.334e^-4	0.948	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2R	14080430	2R_14080430_SNP [dm3] 2R_18192925_SNP [dm6]	G	C	5.334e^-4	0.948	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6253798	X_6253798_SNP [dm3] X_6359765_SNP [dm6]	C	A	5.334e^-4	0.948	SYNONYMOUS_CODING kdn	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	8116387	X_8116387_SNP [dm3] X_8222354_SNP [dm6]	T	G	5.356e^-4	0.948	INTRON sdt
2R	14395445	2R_14395445_SNP [dm3] 2R_18507940_SNP [dm6]	C	T	5.361e^-4	0.948	INTERGENIC
3R	21443980	3R_21443980_INS [dm3] 3R_25618258_INS [dm6]	A	AG	5.371e^-4	0.948	UPSTREAM CG5071 INTRON Npl4
2L	11750312	2L_11750312_SNP [dm3] 2L_11750312_SNP [dm6]	A	T	5.394e^-4	0.948	INTERGENIC
2L	11750362	2L_11750362_SNP [dm3] 2L_11750362_SNP [dm6]	T	C	5.394e^-4	0.948	INTERGENIC
2L	11750363	2L_11750363_DEL [dm3] 2L_11750363_DEL [dm6]	TATGCGC	T	5.394e^-4	0.948	INTERGENIC
2L	11750372	2L_11750372_SNP [dm3] 2L_11750372_SNP [dm6]	G	A	5.394e^-4	0.948	INTERGENIC
2L	14530488	2L_14530488_INS [dm3] 2L_14530488_INS [dm6]	G	GCGTCGT	5.398e^-4	0.948	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6249730	X_6249730_INS [dm3] X_6355697_INS [dm6]	T	TCTGGCCAACGCGT...	5.411e^-4	0.948	INTRON kdn
3R	6951895	3R_6951895_SNP [dm3] 3R_11126173_SNP [dm6]	C	A	5.411e^-4	0.948	DOWNSTREAM Ugt86Dd INTERGENIC
X	15421266	X_15421266_SNP [dm3] X_15527233_SNP [dm6]	A	C	5.421e^-4	0.948	INTRON Ac13E
2R	19170235	2R_19170235_SNP [dm3] 2R_23282712_SNP [dm6]	T	C	5.426e^-4	0.948	DOWNSTREAM CG3124 INTERGENIC
X	3296968	X_3296968_SNP [dm3] X_3402935_SNP [dm6]	T	G	5.426e^-4	0.948	INTRON CR44999 & 1 other
2R	20201853	2R_20201853_INS [dm3] 2R_24314330_INS [dm6]	A	ACACTCCAG	5.451e^-4	0.948	INTERGENIC
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	5.470e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19898184	X_19898184_SNP [dm3] X_20004151_SNP [dm6]	G	A	5.470e^-4	0.948	DOWNSTREAM Dop2R INTERGENIC
X	19898297	X_19898297_SNP [dm3] X_20004264_SNP [dm6]	G	T	5.470e^-4	0.948	DOWNSTREAM Dop2R INTERGENIC
X	9497121	X_9497121_SNP [dm3] X_9603088_SNP [dm6]	G	C	5.470e^-4	0.948	NON_SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7513583	2L_7513583_DEL [dm3] 2L_7513583_DEL [dm6]	AA	A	5.471e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15859766	2R_15859766_SNP [dm3] 2R_19972261_SNP [dm6]	T	G	5.471e^-4	0.948	INTERGENIC
3L	7450702	3L_7450702_SNP [dm3] 3L_7457602_SNP [dm6]	C	T	5.479e^-4	0.948	SYNONYMOUS_CODING ppk26
3L	7450708	3L_7450708_SNP [dm3] 3L_7457608_SNP [dm6]	C	G	5.479e^-4	0.948	SYNONYMOUS_CODING ppk26
2L	15549775	2L_15549775_SNP [dm3] 2L_15549775_SNP [dm6]	T	C	5.554e^-4	0.948	UPSTREAM CR45728 & 1 other INTERGENIC
3R	3253357	3R_3253357_SNP [dm3] 3R_7427635_SNP [dm6]	A	T	5.555e^-4	0.948	INTERGENIC
3L	16753382	3L_16753382_SNP [dm3] 3L_16760282_SNP [dm6]	A	G	5.563e^-4	0.948	INTERGENIC
2L	21838697	2L_21838697_SNP [dm3] 2L_21838697_SNP [dm6]	A	G	5.572e^-4	0.948	INTERGENIC
2L	6960332	2L_6960332_SNP [dm3] 2L_6960332_SNP [dm6]	A	C	5.615e^-4	0.948	UPSTREAM CG10399 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6960423	2L_6960423_SNP [dm3] 2L_6960423_SNP [dm6]	G	C	5.615e^-4	0.948	UTR_5_PRIME CG10399 UPSTREAM Atac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6960475	2L_6960475_SNP [dm3] 2L_6960475_SNP [dm6]	A	G	5.615e^-4	0.948	SYNONYMOUS_CODING CG10399 UPSTREAM Atac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3324448	2L_3324448_SNP [dm3] 2L_3324448_SNP [dm6]	T	G	5.625e^-4	0.948	INTRON CG33281
X	14905624	X_14905624_DEL [dm3] X_15011591_DEL [dm6]	AAG	TC	5.646e^-4	0.948	INTRON hiw	TF binding site mE1_TFBS_chinmo
2L	15218816	2L_15218816_SNP [dm3] 2L_15218816_SNP [dm6]	T	G	5.657e^-4	0.948	INTERGENIC
3R	23778688	3R_23778688_SNP [dm3] 3R_27952966_SNP [dm6]	C	T	5.670e^-4	0.948	DOWNSTREAM Gp93 INTRON CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3180720	3L_3180720_SNP [dm3] 3L_3180720_SNP [dm6]	T	A	5.686e^-4	0.948	INTRON Girdin
3L	3180727	3L_3180727_SNP [dm3] 3L_3180727_SNP [dm6]	T	C	5.686e^-4	0.948	INTRON Girdin
2R	6954479	2R_6954479_INS [dm3] 2R_11066974_INS [dm6]	T	TC	5.712e^-4	0.948	INTRON luna
2R	6954482	2R_6954482_DEL [dm3] 2R_11066977_DEL [dm6]	CT	C	5.712e^-4	0.948	INTRON luna
2L	4227534	2L_4227534_SNP [dm3] 2L_4227534_SNP [dm6]	A	G	5.713e^-4	0.948	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	4227570	2L_4227570_SNP [dm3] 2L_4227570_SNP [dm6]	T	C	5.713e^-4	0.948	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	22958891	2L_22958891_SNP [dm3] 2L_23066159_SNP [dm6]	G	T	5.713e^-4	0.948	DOWNSTREAM Spf45 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3853227	3R_3853227_SNP [dm3] 3R_8027505_SNP [dm6]	G	A	5.722e^-4	0.948	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6900364	3L_6900364_SNP [dm3] 3L_6907264_SNP [dm6]	A	C	5.748e^-4	0.948	INTERGENIC
2L	2526126	2L_2526126_SNP [dm3] 2L_2526126_SNP [dm6]	C	A	5.749e^-4	0.948	INTERGENIC
3R	8118763	3R_8118763_SNP [dm3] 3R_12293041_SNP [dm6]	G	A	5.749e^-4	0.948	INTRON svp
3L	11352789	3L_11352789_SNP [dm3] 3L_11359689_SNP [dm6]	A	T	5.765e^-4	0.948	INTERGENIC
2L	19113474	2L_19113474_SNP [dm3] 2L_19113474_SNP [dm6]	C	T	5.817e^-4	0.948	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5390199	3L_5390199_SNP [dm3] 3L_5397099_SNP [dm6]	C	A	5.867e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	2631873	3R_2631873_SNP [dm3] 3R_6806151_SNP [dm6]	C	T	5.872e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11820060	2L_11820060_DEL [dm3] 2L_11820060_DEL [dm6]	ATT	A	5.872e^-4	0.948	INTRON Pde1c
X	7956868	X_7956868_SNP [dm3] X_8062835_SNP [dm6]	T	G	5.889e^-4	0.948	INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12134290	2L_12134290_SNP [dm3] 2L_12134290_SNP [dm6]	T	G	5.905e^-4	0.948	UPSTREAM rho-6 INTERGENIC
2L	18540519	2L_18540519_SNP [dm3] 2L_18540519_SNP [dm6]	A	T	5.921e^-4	0.948	INTRON Pde11
2L	18540521	2L_18540521_SNP [dm3] 2L_18540521_SNP [dm6]	C	T	5.921e^-4	0.948	INTRON Pde11
2L	734294	2L_734294_SNP [dm3] 2L_734294_SNP [dm6]	A	G	5.921e^-4	0.948	INTERGENIC
3L	14041601	3L_14041601_SNP [dm3] 3L_14048501_SNP [dm6]	T	A	5.934e^-4	0.948	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6954500	2R_6954500_INS [dm3] 2R_11066995_INS [dm6]	A	AA	5.946e^-4	0.948	INTRON luna
X	4215166	X_4215166_SNP [dm3] X_4321133_SNP [dm6]	C	T	5.956e^-4	0.948	SYNONYMOUS_CODING CG2982 DOWNSTREAM mRpL33	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12152563	2L_12152563_SNP [dm3] 2L_12152563_SNP [dm6]	G	A	6.006e^-4	0.948	INTRON CG31760
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	6.013e^-4	0.948	INTRON CngA
3R	14740040	3R_14740040_SNP [dm3] 3R_18914318_SNP [dm6]	C	T	6.019e^-4	0.948	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	14910313	X_14910313_SNP [dm3] X_15016280_SNP [dm6]	A	C	6.029e^-4	0.948	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	14910319	X_14910319_SNP [dm3] X_15016286_SNP [dm6]	T	G	6.029e^-4	0.948	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	18532009	2L_18532009_SNP [dm3] 2L_18532009_SNP [dm6]	T	A	6.082e^-4	0.948	DOWNSTREAM Pde11 & 1 other INTERGENIC
3L	5826900	3L_5826900_SNP [dm3] 3L_5833800_SNP [dm6]	G	T	6.090e^-4	0.948	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18222521	2R_18222521_SNP [dm3] 2R_22335016_SNP [dm6]	A	G	6.112e^-4	0.948	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	6954126	3R_6954126_SNP [dm3] 3R_11128404_SNP [dm6]	G	A	6.116e^-4	0.948	UPSTREAM Ugt86Dd INTERGENIC
3R	6954193	3R_6954193_SNP [dm3] 3R_11128471_SNP [dm6]	A	G	6.116e^-4	0.948	UPSTREAM Ugt86Dd INTERGENIC
4	247268	4_247268_SNP [dm3] 4_226642_SNP [dm6]	C	T	6.120e^-4	0.948	UPSTREAM CG31999 INTRON CG31999	transposable element FlyBase
X	16749716	X_16749716_SNP [dm3] X_16855683_SNP [dm6]	C	T	6.120e^-4	0.948	INTRON CG13003
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	6.126e^-4	0.948	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14904679	3R_14904679_SNP [dm3] 3R_19078957_SNP [dm6]	T	C	6.143e^-4	0.948	INTRON cdi
3R	26585946	3R_26585946_SNP [dm3] 3R_30760224_SNP [dm6]	C	T	6.172e^-4	0.948	INTERGENIC
2R	16089111	2R_16089111_INS [dm3] 2R_20201606_INS [dm6]	G	GG	6.182e^-4	0.948	INTERGENIC
3L	16488148	3L_16488148_SNP [dm3] 3L_16495048_SNP [dm6]	G	A	6.186e^-4	0.948	UTR_5_PRIME CG42514 INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	20335648	X_20335648_SNP [dm3] X_20464621_SNP [dm6]	A	G	6.245e^-4	0.948	INTRON CG32506
X	12956550	X_12956550_SNP [dm3] X_13062517_SNP [dm6]	A	G	6.264e^-4	0.948	DOWNSTREAM mir-971 INTRON rad
3L	18700397	3L_18700397_SNP [dm3] 3L_18707297_SNP [dm6]	A	C	6.312e^-4	0.948	UPSTREAM CR44674 INTERGENIC
X	13479364	X_13479364_SNP [dm3] X_13585331_SNP [dm6]	T	A	6.324e^-4	0.948	INTRON Tango13
3L	18932346	3L_18932346_SNP [dm3] 3L_18939246_SNP [dm6]	C	A	6.384e^-4	0.948	INTRON CG32204
X	6539195	X_6539195_SNP [dm3] X_6645162_SNP [dm6]	A	T	6.394e^-4	0.948	NON_SYNONYMOUS_CODING pigs
X	6539251	X_6539251_SNP [dm3] X_6645218_SNP [dm6]	G	T	6.394e^-4	0.948	SYNONYMOUS_CODING pigs
2R	19502548	2R_19502548_SNP [dm3] 2R_23615025_SNP [dm6]	G	A	6.396e^-4	0.948	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	12971597	2R_12971597_INS [dm3] 2R_17084092_INS [dm6]	A	AC	6.439e^-4	0.948	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19997800	X_19997800_SNP [dm3] X_20103767_SNP [dm6]	C	T	6.439e^-4	0.948	INTERGENIC
X	4410584	X_4410584_SNP [dm3] X_4516551_SNP [dm6]	A	T	6.507e^-4	0.948	INTRON CR32773
X	19443378	X_19443378_SNP [dm3] X_19549345_SNP [dm6]	A	G	6.515e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4112230	3L_4112230_SNP [dm3] 3L_4112230_SNP [dm6]	T	C	6.526e^-4	0.948	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15127468	3L_15127468_SNP [dm3] 3L_15134368_SNP [dm6]	A	G	6.543e^-4	0.948	SYNONYMOUS_CODING CG12316 DOWNSTREAM scaRNA:MeU5-U42
3L	18969923	3L_18969923_SNP [dm3] 3L_18976823_SNP [dm6]	A	T	6.551e^-4	0.948	INTERGENIC
3L	16753467	3L_16753467_SNP [dm3] 3L_16760367_SNP [dm6]	G	C	6.602e^-4	0.948	INTERGENIC
2R	15098341	2R_15098341_SNP [dm3] 2R_19210836_SNP [dm6]	T	A	6.614e^-4	0.948	INTRON hppy
2R	14395376	2R_14395376_SNP [dm3] 2R_18507871_SNP [dm6]	G	A	6.674e^-4	0.948	INTERGENIC
3L	3942001	3L_3942001_SNP [dm3] 3L_3942001_SNP [dm6]	T	C	6.680e^-4	0.948	SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
2R	16698529	2R_16698529_INS [dm3] 2R_20811024_INS [dm6]	A	ACTGCAA	6.682e^-4	0.948	INTERGENIC
2R	16698728	2R_16698728_SNP [dm3] 2R_20811223_SNP [dm6]	C	G	6.682e^-4	0.948	INTERGENIC
3L	17244191	3L_17244191_SNP [dm3] 3L_17251091_SNP [dm6]	T	A	6.695e^-4	0.948	INTRON CR43870
3L	17244192	3L_17244192_SNP [dm3] 3L_17251092_SNP [dm6]	T	G	6.695e^-4	0.948	INTRON CR43870
3L	17244210	3L_17244210_SNP [dm3] 3L_17251110_SNP [dm6]	T	A	6.695e^-4	0.948	INTRON CR43870
3R	2708780	3R_2708780_SNP [dm3] 3R_6883058_SNP [dm6]	A	C	6.713e^-4	0.948	INTRON CR44931	regulatory region REDfly_CRMs
3L	15052260	3L_15052260_SNP [dm3] 3L_15059160_SNP [dm6]	C	T	6.715e^-4	0.948	INTRON Sytbeta
3L	14555033	3L_14555033_SNP [dm3] 3L_14561933_SNP [dm6]	G	A	6.755e^-4	0.948	SYNONYMOUS_CODING CG34039 DOWNSTREAM CR44843
3L	7226402	3L_7226402_SNP [dm3] 3L_7233302_SNP [dm6]	C	G	6.802e^-4	0.948	INTERGENIC
3L	761543	3L_761543_SNP [dm3] 3L_761543_SNP [dm6]	C	A	6.802e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	18521268	2L_18521268_SNP [dm3] 2L_18521268_SNP [dm6]	C	G	6.803e^-4	0.948	INTRON CG10211
3L	12310957	3L_12310957_SNP [dm3] 3L_12317857_SNP [dm6]	C	T	6.806e^-4	0.948	INTERGENIC
3L	3046249	3L_3046249_SNP [dm3] 3L_3046249_SNP [dm6]	T	C	6.806e^-4	0.948	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3046252	3L_3046252_SNP [dm3] 3L_3046252_SNP [dm6]	G	T	6.806e^-4	0.948	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3047027	3L_3047027_SNP [dm3] 3L_3047027_SNP [dm6]	C	T	6.806e^-4	0.948	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1663735	3L_1663735_DEL [dm3] 3L_1663735_DEL [dm6]	AT	A	6.878e^-4	0.948	INTRON CG7971	TF binding site BDTNP1_TFBS_dl
X	17727680	X_17727680_SNP [dm3] X_17833647_SNP [dm6]	A	T	6.888e^-4	0.948	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	6.896e^-4	0.948	INTRON Sox21b
2L	13961612	2L_13961612_SNP [dm3] 2L_13961612_SNP [dm6]	C	T	6.908e^-4	0.948	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo
3L	6943336	3L_6943336_SNP [dm3] 3L_6950236_SNP [dm6]	G	A	6.925e^-4	0.948	UTR_3_PRIME CG10077 DOWNSTREAM tow	TF binding site mE1_TFBS_inv
3L	7117644	3L_7117644_SNP [dm3] 3L_7124544_SNP [dm6]	C	T	6.925e^-4	0.948	SYNONYMOUS_CODING msl-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18531873	2R_18531873_SNP [dm3] 2R_22644368_SNP [dm6]	T	G	6.930e^-4	0.948	UPSTREAM Ugt58Fa DOWNSTREAM CG2852 INTERGENIC
X	13481311	X_13481311_SNP [dm3] X_13587278_SNP [dm6]	T	A	6.979e^-4	0.948	INTRON Tango13
X	13481781	X_13481781_SNP [dm3] X_13587748_SNP [dm6]	G	T	6.979e^-4	0.948	INTRON Tango13
3R	26247324	3R_26247324_SNP [dm3] 3R_30421602_SNP [dm6]	A	G	6.994e^-4	0.948	SYNONYMOUS_CODING CG2217 UTR_5_PRIME CG42740	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26249161	3R_26249161_SNP [dm3] 3R_30423439_SNP [dm6]	T	A	6.994e^-4	0.948	NON_SYNONYMOUS_CODING CG15535 UPSTREAM CG2217 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26249163	3R_26249163_SNP [dm3] 3R_30423441_SNP [dm6]	A	G	6.994e^-4	0.948	SYNONYMOUS_CODING CG15535 UPSTREAM CG2217 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16556567	3L_16556567_SNP [dm3] 3L_16563467_SNP [dm6]	T	G	7.023e^-4	0.948	UTR_3_PRIME Mipp1 DOWNSTREAM Mipp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	8286181	2L_8286181_SNP [dm3] 2L_8286181_SNP [dm6]	T	C	7.034e^-4	0.948	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25878703	3R_25878703_SNP [dm3] 3R_30052981_SNP [dm6]	C	T	7.037e^-4	0.948	SYNONYMOUS_CODING CG7946 UPSTREAM CG15528 DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	1041964	X_1041964_SNP [dm3] X_1147931_SNP [dm6]	A	G	7.041e^-4	0.948	INTERGENIC
X	1042002	X_1042002_SNP [dm3] X_1147969_SNP [dm6]	G	A	7.041e^-4	0.948	INTERGENIC
X	3256041	X_3256041_SNP [dm3] X_3362008_SNP [dm6]	A	G	7.111e^-4	0.948	INTERGENIC
X	3256050	X_3256050_SNP [dm3] X_3362017_SNP [dm6]	A	G	7.111e^-4	0.948	INTERGENIC
2L	5876504	2L_5876504_SNP [dm3] 2L_5876504_SNP [dm6]	C	T	7.123e^-4	0.948	INTRON rau
2L	1889115	2L_1889115_SNP [dm3] 2L_1889115_SNP [dm6]	T	G	7.131e^-4	0.948	INTRON CG7337
2R	6276043	2R_6276043_SNP [dm3] 2R_10388538_SNP [dm6]	T	A	7.133e^-4	0.948	UTR_5_PRIME CG42732 INTRON CG42732
3R	26265740	3R_26265740_DEL [dm3] 3R_30440018_DEL [dm6]	AA	A	7.140e^-4	0.948	INTRON CG15537
2L	19696444	2L_19696444_SNP [dm3] 2L_19696444_SNP [dm6]	G	A	7.152e^-4	0.948	INTRON Lar
2L	18532002	2L_18532002_SNP [dm3] 2L_18532002_SNP [dm6]	T	A	7.188e^-4	0.948	DOWNSTREAM Pde11 & 1 other INTERGENIC
2L	18532006	2L_18532006_SNP [dm3] 2L_18532006_SNP [dm6]	C	T	7.188e^-4	0.948	DOWNSTREAM Pde11 & 1 other INTERGENIC
2R	19139686	2R_19139686_SNP [dm3] 2R_23252163_SNP [dm6]	T	A	7.243e^-4	0.948	INTERGENIC
X	6251378	X_6251378_SNP [dm3] X_6357345_SNP [dm6]	T	A	7.243e^-4	0.948	INTRON kdn
3R	16760590	3R_16760590_SNP [dm3] 3R_20934868_SNP [dm6]	G	A	7.248e^-4	0.948	INTRON CG31191
3R	10499457	3R_10499457_SNP [dm3] 3R_14673735_SNP [dm6]	A	G	7.289e^-4	0.948	INTRON Meltrin
2L	18903711	2L_18903711_SNP [dm3] 2L_18903711_SNP [dm6]	G	A	7.303e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	18903712	2L_18903712_SNP [dm3] 2L_18903712_SNP [dm6]	C	T	7.303e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17229437	2R_17229437_SNP [dm3] 2R_21341932_SNP [dm6]	A	T	7.307e^-4	0.948	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
2R	17229438	2R_17229438_SNP [dm3] 2R_21341933_SNP [dm6]	A	T	7.307e^-4	0.948	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
3R	6174488	3R_6174488_SNP [dm3] 3R_10348766_SNP [dm6]	G	A	7.315e^-4	0.948	UTR_5_PRIME CG31406 UPSTREAM CG31406
2L	3260934	2L_3260934_DEL [dm3] 2L_3260934_DEL [dm6]	ACTGTGTACGATA...	A	7.318e^-4	0.948	DOWNSTREAM CR45337 & 1 other INTERGENIC
2L	3260953	2L_3260953_SNP [dm3] 2L_3260953_SNP [dm6]	C	T	7.318e^-4	0.948	DOWNSTREAM CR45337 & 1 other INTERGENIC
2L	3260960	2L_3260960_SNP [dm3] 2L_3260960_SNP [dm6]	T	C	7.318e^-4	0.948	DOWNSTREAM CR45337 & 1 other INTERGENIC
3L	11747423	3L_11747423_SNP [dm3] 3L_11754323_SNP [dm6]	T	A	7.320e^-4	0.948	INTRON CG6024
3R	24737260	3R_24737260_SNP [dm3] 3R_28911538_SNP [dm6]	T	C	7.320e^-4	0.948	INTRON Doa
X	11273279	X_11273279_SNP [dm3] X_11379246_SNP [dm6]	A	T	7.320e^-4	0.948	INTRON dlg1
2R	10423921	2R_10423921_SNP [dm3] 2R_14536416_SNP [dm6]	T	C	7.327e^-4	0.948	INTRON ttv
2R	10423932	2R_10423932_SNP [dm3] 2R_14536427_SNP [dm6]	C	A	7.327e^-4	0.948	INTRON ttv
2R	10423934	2R_10423934_SNP [dm3] 2R_14536429_SNP [dm6]	T	A	7.327e^-4	0.948	INTRON ttv
2R	10423938	2R_10423938_SNP [dm3] 2R_14536433_SNP [dm6]	A	G	7.327e^-4	0.948	INTRON ttv
2R	10423941	2R_10423941_INS [dm3] 2R_14536436_INS [dm6]	C	CT	7.327e^-4	0.948	INTRON ttv
2R	10423946	2R_10423946_SNP [dm3] 2R_14536441_SNP [dm6]	T	C	7.327e^-4	0.948	INTRON ttv
2R	10423949	2R_10423949_SNP [dm3] 2R_14536444_SNP [dm6]	T	C	7.327e^-4	0.948	INTRON ttv
2R	10423951	2R_10423951_SNP [dm3] 2R_14536446_SNP [dm6]	C	T	7.327e^-4	0.948	INTRON ttv
X	5443110	X_5443110_DEL [dm3] X_5549077_DEL [dm6]	AAGT	G	7.327e^-4	0.948	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8132987	3L_8132987_SNP [dm3] 3L_8139887_SNP [dm6]	T	G	7.405e^-4	0.948	SYNONYMOUS_CODING mus301
2R	19985170	2R_19985170_SNP [dm3] 2R_24097647_SNP [dm6]	G	T	7.440e^-4	0.948	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9812772	3L_9812772_SNP [dm3] 3L_9819672_SNP [dm6]	C	T	7.447e^-4	0.948	INTRON CG43897
3R	15154027	3R_15154027_SNP [dm3] 3R_19328305_SNP [dm6]	T	A	7.447e^-4	0.948	UPSTREAM CR44175 INTERGENIC
3L	5073276	3L_5073276_SNP [dm3] 3L_5073276_SNP [dm6]	G	T	7.472e^-4	0.948	INTRON Con
2R	13594783	2R_13594783_SNP [dm3] 2R_17707278_SNP [dm6]	C	T	7.507e^-4	0.948	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	26661591	3R_26661591_SNP [dm3] 3R_30835869_SNP [dm6]	T	A	7.507e^-4	0.948	INTRON CG15544
X	10576534	X_10576534_SNP [dm3] X_10682501_SNP [dm6]	A	G	7.508e^-4	0.948	INTRON X11Lbeta
X	9002284	X_9002284_SNP [dm3] X_9108251_SNP [dm6]	C	T	7.508e^-4	0.948	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
X	9002394	X_9002394_SNP [dm3] X_9108361_SNP [dm6]	T	C	7.508e^-4	0.948	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13470312	3R_13470312_SNP [dm3] 3R_17644590_SNP [dm6]	A	G	7.521e^-4	0.948	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31568 INTRON CG43175
3R	4828765	3R_4828765_DEL [dm3] 3R_9003043_DEL [dm6]	TTAGTAC	T	7.544e^-4	0.948	UPSTREAM CG11980 INTRON CG31100
3R	27175840	3R_27175840_SNP [dm3] 3R_31350118_SNP [dm6]	T	C	7.551e^-4	0.948	INTRON CG34347
2L	153797	2L_153797_SNP [dm3] 2L_153797_SNP [dm6]	A	G	7.573e^-4	0.948	SYNONYMOUS_CODING CG3709 UPSTREAM CG42399 INTRON CG11455	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	16129461	2L_16129461_INS [dm3] 2L_16129461_INS [dm6]	T	TT	7.612e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_inv
3L	23023063	3L_23023063_SNP [dm3] 3L_23029963_SNP [dm6]	G	C	7.624e^-4	0.948	INTRON nrm
2L	3323682	2L_3323682_SNP [dm3] 2L_3323682_SNP [dm6]	T	C	7.629e^-4	0.948	UPSTREAM CG33281 DOWNSTREAM CG8837 INTERGENIC
2L	3323684	2L_3323684_SNP [dm3] 2L_3323684_SNP [dm6]	T	A	7.629e^-4	0.948	UPSTREAM CG33281 DOWNSTREAM CG8837 INTERGENIC
2R	9830703	2R_9830703_SNP [dm3] 2R_13943198_SNP [dm6]	A	G	7.629e^-4	0.948	SYNONYMOUS_CODING DJ-1alpha DOWNSTREAM AGO1	TF binding site mE1_TFBS_inv
3L	13295469	3L_13295469_SNP [dm3] 3L_13302369_SNP [dm6]	A	C	7.638e^-4	0.948	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2L	3648444	2L_3648444_SNP [dm3] 2L_3648444_SNP [dm6]	G	T	7.647e^-4	0.948	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13295455	3L_13295455_INS [dm3] 3L_13302355_INS [dm6]	A	AA	7.686e^-4	0.948	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2L	14751594	2L_14751594_SNP [dm3] 2L_14751594_SNP [dm6]	T	C	7.688e^-4	0.948	INTERGENIC
3L	4313742	3L_4313742_SNP [dm3] 3L_4313742_SNP [dm6]	C	A	7.710e^-4	0.948	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3265289	3L_3265289_SNP [dm3] 3L_3265289_SNP [dm6]	T	C	7.715e^-4	0.948	INTRON ckd	TF binding site mE1_TFBS_inv
2L	12547145	2L_12547145_SNP [dm3] 2L_12547145_SNP [dm6]	A	G	7.736e^-4	0.948	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4344758	2L_4344758_INS [dm3] 2L_4344758_INS [dm6]	A	ATA	7.744e^-4	0.948	UTR_3_PRIME Atet
2L	6599235	2L_6599235_SNP [dm3] 2L_6599235_SNP [dm6]	A	C	7.762e^-4	0.948	INTRON CG11319
2R	18135002	2R_18135002_SNP [dm3] 2R_22247497_SNP [dm6]	T	G	7.762e^-4	0.948	INTRON dve	regulatory region REDfly_CRMs
2L	3674637	2L_3674637_SNP [dm3] 2L_3674637_SNP [dm6]	A	G	7.764e^-4	0.948	INTRON CG34340
3L	13452755	3L_13452755_SNP [dm3] 3L_13459655_SNP [dm6]	T	C	7.764e^-4	0.948	INTRON CG10738
2R	4820309	2R_4820309_SNP [dm3] 2R_8932804_SNP [dm6]	C	T	7.766e^-4	0.948	SYNONYMOUS_CODING PAN2 UPSTREAM CG13749	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15154117	3R_15154117_SNP [dm3] 3R_19328395_SNP [dm6]	T	C	7.766e^-4	0.948	UPSTREAM CR44175 INTERGENIC
3L	2080984	3L_2080984_SNP [dm3] 3L_2080984_SNP [dm6]	T	G	7.772e^-4	0.948	SYNONYMOUS_CODING sls INTRON sls
2R	10315737	2R_10315737_SNP [dm3] 2R_14428232_SNP [dm6]	G	A	7.780e^-4	0.948	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10315770	2R_10315770_SNP [dm3] 2R_14428265_SNP [dm6]	A	T	7.780e^-4	0.948	NON_SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
X	7959396	X_7959396_SNP [dm3] X_8065363_SNP [dm6]	T	C	7.780e^-4	0.948	INTRON mys
3L	18795624	3L_18795624_SNP [dm3] 3L_18802524_SNP [dm6]	G	T	7.788e^-4	0.948	UTR_3_PRIME CG14073
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	7.820e^-4	0.948	UPSTREAM CG5810 INTRON SNF4Agamma
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	7.820e^-4	0.948	UPSTREAM CG5810 INTRON SNF4Agamma
3R	25618122	3R_25618122_SNP [dm3] 3R_29792400_SNP [dm6]	A	G	7.820e^-4	0.948	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18165723	2R_18165723_SNP [dm3] 2R_22278218_SNP [dm6]	A	G	7.841e^-4	0.948	INTRON dve	TF binding site mE1_TFBS_HSA
2L	7514642	2L_7514642_SNP [dm3] 2L_7514642_SNP [dm6]	C	T	7.868e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	7514938	2L_7514938_SNP [dm3] 2L_7514938_SNP [dm6]	C	T	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515044	2L_7515044_DEL [dm3] 2L_7515044_DEL [dm6]	AA	A	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7515093	2L_7515093_SNP [dm3] 2L_7515093_SNP [dm6]	G	A	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7515506	2L_7515506_SNP [dm3] 2L_7515506_SNP [dm6]	C	T	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515558	2L_7515558_SNP [dm3] 2L_7515558_SNP [dm6]	T	G	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515843	2L_7515843_SNP [dm3] 2L_7515843_SNP [dm6]	G	A	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2L	7516089	2L_7516089_SNP [dm3] 2L_7516089_SNP [dm6]	A	T	7.868e^-4	0.948	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7517234	2L_7517234_SNP [dm3] 2L_7517234_SNP [dm6]	T	C	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7517281	2L_7517281_SNP [dm3] 2L_7517281_SNP [dm6]	A	G	7.868e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7521752	2L_7521752_SNP [dm3] 2L_7521752_SNP [dm6]	T	A	7.868e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	19112524	X_19112524_SNP [dm3] X_19218491_SNP [dm6]	A	G	7.908e^-4	0.948	INTERGENIC
3L	14229549	3L_14229549_SNP [dm3] 3L_14236449_SNP [dm6]	T	C	7.922e^-4	0.948	UPSTREAM CG7906 & 1 other INTERGENIC
3L	699691	3L_699691_SNP [dm3] 3L_699691_SNP [dm6]	A	G	7.942e^-4	0.948	UPSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	4936985	3R_4936985_SNP [dm3] 3R_9111263_SNP [dm6]	G	C	7.951e^-4	0.948	INTRON pum
3R	4937318	3R_4937318_SNP [dm3] 3R_9111596_SNP [dm6]	C	T	7.951e^-4	0.948	INTRON pum
2L	4439250	2L_4439250_SNP [dm3] 2L_4439250_SNP [dm6]	T	G	7.980e^-4	0.948	UTR_5_PRIME CG15431
X	9746390	X_9746390_SNP [dm3] X_9852357_SNP [dm6]	A	T	7.980e^-4	0.948	UTR_3_PRIME CG32698
2L	1111538	2L_1111538_SNP [dm3] 2L_1111538_SNP [dm6]	G	A	8.000e^-4	0.948	SYNONYMOUS_CODING CG14339
2L	1177222	2L_1177222_SNP [dm3] 2L_1177222_SNP [dm6]	A	G	8.000e^-4	0.948	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
2R	16062086	2R_16062086_DEL [dm3] 2R_20174581_DEL [dm6]	AATA	A	8.006e^-4	0.948	INTERGENIC
2R	16062099	2R_16062099_SNP [dm3] 2R_20174594_SNP [dm6]	T	A	8.006e^-4	0.948	INTERGENIC
2R	16062100	2R_16062100_SNP [dm3] 2R_20174595_SNP [dm6]	A	T	8.006e^-4	0.948	INTERGENIC
2R	16062106	2R_16062106_SNP [dm3] 2R_20174601_SNP [dm6]	A	T	8.006e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13394803	3L_13394803_SNP [dm3] 3L_13401703_SNP [dm6]	A	G	8.013e^-4	0.948	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7883924	3L_7883924_SNP [dm3] 3L_7890824_SNP [dm6]	T	A	8.017e^-4	0.948	INTRON CG32365
X	14232887	X_14232887_SNP [dm3] X_14338854_SNP [dm6]	T	C	8.028e^-4	0.948	INTRON dpr8
2L	10985601	2L_10985601_SNP [dm3] 2L_10985601_SNP [dm6]	G	C	8.068e^-4	0.948	SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11422111	2L_11422111_SNP [dm3] 2L_11422111_SNP [dm6]	A	G	8.076e^-4	0.948	INTERGENIC
3R	26334624	3R_26334624_SNP [dm3] 3R_30508902_SNP [dm6]	T	G	8.076e^-4	0.948	NON_SYNONYMOUS_CODING CG34041 SPLICE_SITE_REGION CG34041 DOWNSTREAM CG15539 & 1 other	TF binding site mE1_TFBS_inv
3L	2542295	3L_2542295_SNP [dm3] 3L_2542295_SNP [dm6]	C	G	8.080e^-4	0.948	INTRON Spn
2R	17578757	2R_17578757_SNP [dm3] 2R_21691252_SNP [dm6]	G	A	8.095e^-4	0.948	UPSTREAM CG42496 & 3 others DOWNSTREAM CG10307 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17578763	2R_17578763_SNP [dm3] 2R_21691258_SNP [dm6]	G	A	8.095e^-4	0.948	UPSTREAM CG42496 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17578766	2R_17578766_SNP [dm3] 2R_21691261_SNP [dm6]	T	A	8.095e^-4	0.948	UPSTREAM CG42496 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7105577	3L_7105577_SNP [dm3] 3L_7112477_SNP [dm6]	C	T	8.095e^-4	0.948	INTRON form3
2L	12133253	2L_12133253_SNP [dm3] 2L_12133253_SNP [dm6]	A	G	8.099e^-4	0.948	SYNONYMOUS_CODING rho-6	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	16705946	2L_16705946_SNP [dm3] 2L_16705946_SNP [dm6]	C	A	8.178e^-4	0.948	INTRON CG31808
3R	18752742	3R_18752742_SNP [dm3] 3R_22927020_SNP [dm6]	G	T	8.178e^-4	0.948	INTRON klg
3R	18752744	3R_18752744_SNP [dm3] 3R_22927022_SNP [dm6]	A	G	8.178e^-4	0.948	INTRON klg
3R	18752746	3R_18752746_SNP [dm3] 3R_22927024_SNP [dm6]	A	T	8.178e^-4	0.948	INTRON klg
2L	16450299	2L_16450299_SNP [dm3] 2L_16450299_SNP [dm6]	G	T	8.200e^-4	0.948	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3L	14105279	3L_14105279_SNP [dm3] 3L_14112179_SNP [dm6]	T	C	8.212e^-4	0.948	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2580460	3L_2580460_SNP [dm3] 3L_2580460_SNP [dm6]	G	A	8.246e^-4	0.948	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2527339	2L_2527339_SNP [dm3] 2L_2527339_SNP [dm6]	G	T	8.261e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14530522	2L_14530522_DEL [dm3] 2L_14530522_DEL [dm6]	CCCTTAAATATC...	C	8.262e^-4	0.948	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18165719	2R_18165719_SNP [dm3] 2R_22278214_SNP [dm6]	T	G	8.266e^-4	0.948	INTRON dve	TF binding site mE1_TFBS_HSA
2L	10888521	2L_10888521_SNP [dm3] 2L_10888521_SNP [dm6]	A	G	8.276e^-4	0.948	SYNONYMOUS_CODING CG14071
2L	6960326	2L_6960326_SNP [dm3] 2L_6960326_SNP [dm6]	C	T	8.302e^-4	0.948	UTR_5_PRIME Atac1 UPSTREAM CG10399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1822014	3L_1822014_SNP [dm3] 3L_1822014_SNP [dm6]	T	C	8.302e^-4	0.948	SYNONYMOUS_CODING GV1
X	9745680	X_9745680_SNP [dm3] X_9851647_SNP [dm6]	A	G	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	9746346	X_9746346_SNP [dm3] X_9852313_SNP [dm6]	G	C	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	9746350	X_9746350_SNP [dm3] X_9852317_SNP [dm6]	G	C	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	9746376	X_9746376_SNP [dm3] X_9852343_SNP [dm6]	T	A	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	9746403	X_9746403_SNP [dm3] X_9852370_SNP [dm6]	G	A	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	9746409	X_9746409_SNP [dm3] X_9852376_SNP [dm6]	T	A	8.315e^-4	0.948	UTR_3_PRIME CG32698
X	12587533	X_12587533_SNP [dm3] X_12693500_SNP [dm6]	A	G	8.316e^-4	0.948	INTRON Smr	TF binding site mE1_TFBS_inv
X	4766348	X_4766348_SNP [dm3] X_4872315_SNP [dm6]	A	T	8.319e^-4	0.948	INTRON CG42594
X	15887787	X_15887787_SNP [dm3] X_15993754_SNP [dm6]	C	T	8.321e^-4	0.948	SYNONYMOUS_CODING exd
2L	10888516	2L_10888516_SNP [dm3] 2L_10888516_SNP [dm6]	C	T	8.321e^-4	0.948	NON_SYNONYMOUS_CODING CG14071
2L	12133756	2L_12133756_SNP [dm3] 2L_12133756_SNP [dm6]	A	G	8.321e^-4	0.948	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16700971	2R_16700971_DEL [dm3] 2R_20813466_DEL [dm6]	ACGAGAGA	T	8.321e^-4	0.948	INTERGENIC
2R	16700994	2R_16700994_SNP [dm3] 2R_20813489_SNP [dm6]	T	C	8.321e^-4	0.948	INTERGENIC
2R	14272022	2R_14272022_SNP [dm3] 2R_18384517_SNP [dm6]	C	T	8.333e^-4	0.948	UPSTREAM CG18107 DOWNSTREAM CG15067 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16056801	2R_16056801_SNP [dm3] 2R_20169296_SNP [dm6]	A	G	8.356e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26372609	3R_26372609_SNP [dm3] 3R_30546887_SNP [dm6]	T	A	8.356e^-4	0.948	UPSTREAM tmod INTRON tmod
2L	14530981	2L_14530981_DEL [dm3] 2L_14530981_DEL [dm6]	CCATCGATGCCGAATCGTC...	C	8.361e^-4	0.948	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11212328	3L_11212328_SNP [dm3] 3L_11219228_SNP [dm6]	T	C	8.375e^-4	0.948	INTRON CG42671
X	10259565	X_10259565_SNP [dm3] X_10365532_SNP [dm6]	C	T	8.375e^-4	0.948	DOWNSTREAM CG32679 INTRON l_1_G0289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10945711	2L_10945711_SNP [dm3] 2L_10945711_SNP [dm6]	G	A	8.382e^-4	0.948	INTRON dpr2
3R	16668336	3R_16668336_SNP [dm3] 3R_20842614_SNP [dm6]	A	G	8.411e^-4	0.948	SYNONYMOUS_CODING CG15695
3R	16668342	3R_16668342_SNP [dm3] 3R_20842620_SNP [dm6]	G	A	8.411e^-4	0.948	SYNONYMOUS_CODING CG15695
3R	16668373	3R_16668373_SNP [dm3] 3R_20842651_SNP [dm6]	G	A	8.411e^-4	0.948	NON_SYNONYMOUS_CODING CG15695
2L	9308223	2L_9308223_SNP [dm3] 2L_9308223_SNP [dm6]	A	C	8.433e^-4	0.948	INTERGENIC
2L	9308248	2L_9308248_SNP [dm3] 2L_9308248_SNP [dm6]	C	T	8.433e^-4	0.948	INTERGENIC
2L	7515630	2L_7515630_SNP [dm3] 2L_7515630_SNP [dm6]	A	T	8.447e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	19699202	2L_19699202_SNP [dm3] 2L_19699202_SNP [dm6]	C	T	8.487e^-4	0.948	DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da
2L	2527460	2L_2527460_SNP [dm3] 2L_2527460_SNP [dm6]	A	T	8.501e^-4	0.948	INTERGENIC
3R	15404942	3R_15404942_SNP [dm3] 3R_19579220_SNP [dm6]	A	C	8.510e^-4	0.948	INTRON Dys
X	16158192	X_16158192_SNP [dm3] X_16264159_SNP [dm6]	T	C	8.524e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16158268	X_16158268_SNP [dm3] X_16264235_SNP [dm6]	G	T	8.524e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16158283	X_16158283_SNP [dm3] X_16264250_SNP [dm6]	G	T	8.524e^-4	0.948	DOWNSTREAM CG12507 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3032998	2R_3032998_SNP [dm3] 2R_7145493_SNP [dm6]	C	A	8.528e^-4	0.948	INTERGENIC
X	8639103	X_8639103_SNP [dm3] X_8745070_SNP [dm6]	A	G	8.534e^-4	0.948	INTERGENIC
3L	17008777	3L_17008777_SNP [dm3] 3L_17015677_SNP [dm6]	G	A	8.546e^-4	0.948	UTR_5_PRIME CG6664 UPSTREAM CG7728 INTRON CG6664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2532403	3R_2532403_SNP [dm3] 3R_6706681_SNP [dm6]	T	A	8.549e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10771854	3R_10771854_SNP [dm3] 3R_14946132_SNP [dm6]	A	T	8.556e^-4	0.948	INTERGENIC
3L	12067593	3L_12067593_SNP [dm3] 3L_12074493_SNP [dm6]	A	C	8.561e^-4	0.948	INTRON Sema-5c
3L	2147048	3L_2147048_SNP [dm3] 3L_2147048_SNP [dm6]	T	C	8.578e^-4	0.948	INTRON zormin
X	7494163	X_7494163_SNP [dm3] X_7600130_SNP [dm6]	A	T	8.583e^-4	0.948	INTERGENIC	regulatory region REDfly_CRMs
3L	15127848	3L_15127848_SNP [dm3] 3L_15134748_SNP [dm6]	G	T	8.598e^-4	0.948	UPSTREAM scaRNA:MeU5-U42 INTRON CG12316
X	17254585	X_17254585_INS [dm3] X_17360552_INS [dm6]	G	GCAAGCATTA	8.648e^-4	0.948	INTERGENIC
2R	14087695	2R_14087695_SNP [dm3] 2R_18200190_SNP [dm6]	A	C	8.697e^-4	0.948	INTERGENIC
X	21231603	X_21231603_SNP [dm3] X_21360576_SNP [dm6]	C	T	8.697e^-4	0.948	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19796660	2R_19796660_SNP [dm3] 2R_23909137_SNP [dm6]	G	A	8.699e^-4	0.948	UPSTREAM CR44806 INTRON kcc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	17896378	X_17896378_SNP [dm3] X_18002345_SNP [dm6]	G	T	8.699e^-4	0.948	INTRON Sh
3L	5065386	3L_5065386_SNP [dm3] 3L_5065386_SNP [dm6]	G	A	8.716e^-4	0.948	SPLICE_SITE_REGION Con INTRON Con
2L	15094934	2L_15094934_SNP [dm3] 2L_15094934_SNP [dm6]	T	C	8.718e^-4	0.948	SYNONYMOUS_CODING CG15270
2L	10498791	2L_10498791_SNP [dm3] 2L_10498791_SNP [dm6]	T	C	8.720e^-4	0.948	INTRON Myo31DF
3L	4111882	3L_4111882_SNP [dm3] 3L_4111882_SNP [dm6]	C	T	8.734e^-4	0.948	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4111885	3L_4111885_SNP [dm3] 3L_4111885_SNP [dm6]	A	G	8.734e^-4	0.948	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	761560	3L_761560_SNP [dm3] 3L_761560_SNP [dm6]	A	T	8.755e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	21480557	3R_21480557_SNP [dm3] 3R_25654835_SNP [dm6]	T	G	8.780e^-4	0.948	INTRON Tnks	TF binding site mE1_TFBS_chinmo
X	12136646	X_12136646_MNP [dm3] X_12242613_MNP [dm6]	TGGC	ATTT	8.786e^-4	0.948	INTRON Ten-a
X	12136650	X_12136650_INS [dm3] X_12242617_INS [dm6]	C	CAAGTTCAAGTT...	8.786e^-4	0.948	INTRON Ten-a
X	13932160	X_13932160_SNP [dm3] X_14038127_SNP [dm6]	A	G	8.789e^-4	0.948	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10083046	2R_10083046_INS [dm3] 2R_14195541_INS [dm6]	C	CCTGAAACCCGAGGGCGAAT...	8.789e^-4	0.948	CODON_INSERTION CG30069	TF binding site BDTNP1_TFBS_twi
X	8572001	X_8572001_SNP [dm3] X_8677968_SNP [dm6]	G	T	8.789e^-4	0.948	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9921660	3L_9921660_SNP [dm3] 3L_9928560_SNP [dm6]	A	T	8.797e^-4	0.948	INTRON CG34356
2R	9917083	2R_9917083_SNP [dm3] 2R_14029578_SNP [dm6]	G	T	8.817e^-4	0.948	DOWNSTREAM CG18371 INTRON mam
3L	1571702	3L_1571702_SNP [dm3] 3L_1571702_SNP [dm6]	A	T	8.832e^-4	0.948	UPSTREAM CG12004 INTRON CG12004
3L	3176003	3L_3176003_SNP [dm3] 3L_3176003_SNP [dm6]	T	G	8.850e^-4	0.948	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
3L	6064866	3L_6064866_SNP [dm3] 3L_6071766_SNP [dm6]	T	A	8.853e^-4	0.948	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19578211	2R_19578211_SNP [dm3] 2R_23690688_SNP [dm6]	T	G	8.864e^-4	0.948	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
2L	20750617	2L_20750617_SNP [dm3] 2L_20750617_SNP [dm6]	G	A	8.868e^-4	0.948	UTR_3_PRIME Fs_2_Ket DOWNSTREAM CG9319	TF binding site mE1_TFBS_sens
2R	16700944	2R_16700944_SNP [dm3] 2R_20813439_SNP [dm6]	T	A	8.879e^-4	0.948	INTERGENIC
2R	16700951	2R_16700951_SNP [dm3] 2R_20813446_SNP [dm6]	A	G	8.879e^-4	0.948	INTERGENIC
3L	5318758	3L_5318758_SNP [dm3] 3L_5325658_SNP [dm6]	A	C	8.903e^-4	0.948	INTERGENIC
3L	3177985	3L_3177985_SNP [dm3] 3L_3177985_SNP [dm6]	A	C	8.915e^-4	0.948	UPSTREAM Girdin INTRON CG14964
2L	157709	2L_157709_SNP [dm3] 2L_157709_SNP [dm6]	T	A	8.924e^-4	0.948	DOWNSTREAM CG33635 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	157831	2L_157831_SNP [dm3] 2L_157831_SNP [dm6]	C	A	8.924e^-4	0.948	DOWNSTREAM CG33635 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	200342	2L_200342_SNP [dm3] 2L_200342_SNP [dm6]	T	C	8.924e^-4	0.948	INTRON spen
X	22203328	X_22203328_SNP [dm3] X_22801492_SNP [dm6]	T	C	8.931e^-4	0.948	INTERGENIC
2R	12360319	2R_12360319_SNP [dm3] 2R_16472814_SNP [dm6]	T	A	8.932e^-4	0.948	INTERGENIC
2L	19118896	2L_19118896_SNP [dm3] 2L_19118896_SNP [dm6]	C	T	8.969e^-4	0.948	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118914	2L_19118914_SNP [dm3] 2L_19118914_SNP [dm6]	T	G	8.969e^-4	0.948	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118919	2L_19118919_INS [dm3] 2L_19118919_INS [dm6]	A	ACAATA	8.969e^-4	0.948	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118942	2L_19118942_SNP [dm3] 2L_19118942_SNP [dm6]	T	G	8.969e^-4	0.948	INTRON Ddc	regulatory region REDfly_CRMs
3R	20397744	3R_20397744_SNP [dm3] 3R_24572022_SNP [dm6]	G	T	8.975e^-4	0.948	UTR_5_PRIME CG13624 UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10184032	3L_10184032_SNP [dm3] 3L_10190932_SNP [dm6]	C	T	8.975e^-4	0.948	SYNONYMOUS_CODING ect
X	10530023	X_10530023_SNP [dm3] X_10635990_SNP [dm6]	T	C	8.984e^-4	0.948	INTRON X11Lbeta
X	10530959	X_10530959_SNP [dm3] X_10636926_SNP [dm6]	C	A	8.984e^-4	0.948	INTRON X11Lbeta
X	10530969	X_10530969_SNP [dm3] X_10636936_SNP [dm6]	T	A	8.984e^-4	0.948	INTRON X11Lbeta
3R	18490566	3R_18490566_SNP [dm3] 3R_22664844_SNP [dm6]	C	T	9.001e^-4	0.948	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2L	1988997	2L_1988997_SNP [dm3] 2L_1988997_SNP [dm6]	G	A	9.035e^-4	0.948	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	4227045	2L_4227045_SNP [dm3] 2L_4227045_SNP [dm6]	A	C	9.042e^-4	0.948	UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	6500100	2R_6500100_DEL [dm3] 2R_10612595_DEL [dm6]	TCTCCTGC	AA	9.052e^-4	0.948	INTRON psq
2R	16703018	2R_16703018_SNP [dm3] 2R_20815513_SNP [dm6]	A	T	9.053e^-4	0.948	INTERGENIC
2L	491866	2L_491866_SNP [dm3] 2L_491866_SNP [dm6]	C	A	9.086e^-4	0.948	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	491870	2L_491870_SNP [dm3] 2L_491870_SNP [dm6]	G	C	9.086e^-4	0.948	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7133795	3R_7133795_SNP [dm3] 3R_11308073_SNP [dm6]	A	G	9.094e^-4	0.948	INTERGENIC
X	2667123	X_2667123_SNP [dm3] X_2773090_SNP [dm6]	C	A	9.103e^-4	0.948	INTRON kirre
3L	4855864	3L_4855864_SNP [dm3] 3L_4855864_SNP [dm6]	C	T	9.107e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26268241	3R_26268241_SNP [dm3] 3R_30442519_SNP [dm6]	G	A	9.117e^-4	0.948	INTRON CG15537
2L	1015285	2L_1015285_SNP [dm3] 2L_1015285_SNP [dm6]	A	G	9.135e^-4	0.948	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2673001	2R_2673001_SNP [dm3] 2R_6785496_SNP [dm6]	C	T	9.135e^-4	0.948	INTRON Epac
3L	16482989	3L_16482989_SNP [dm3] 3L_16489889_SNP [dm6]	T	A	9.154e^-4	0.948	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	17244233	3L_17244233_SNP [dm3] 3L_17251133_SNP [dm6]	A	C	9.176e^-4	0.948	INTRON CR43870
3L	17244236	3L_17244236_SNP [dm3] 3L_17251136_SNP [dm6]	T	A	9.176e^-4	0.948	INTRON CR43870
3L	17244237	3L_17244237_SNP [dm3] 3L_17251137_SNP [dm6]	G	T	9.176e^-4	0.948	INTRON CR43870
3L	17244244	3L_17244244_SNP [dm3] 3L_17251144_SNP [dm6]	T	G	9.176e^-4	0.948	INTRON CR43870
3R	20833903	3R_20833903_DEL [dm3] 3R_25008181_DEL [dm6]	ACTAACTGA	A	9.177e^-4	0.948	INTRON tnc
2L	14438780	2L_14438780_SNP [dm3] 2L_14438780_SNP [dm6]	C	T	9.184e^-4	0.948	INTERGENIC
2L	3259282	2L_3259282_SNP [dm3] 2L_3259282_SNP [dm6]	C	T	9.184e^-4	0.948	INTERGENIC
2L	6541095	2L_6541095_SNP [dm3] 2L_6541095_SNP [dm6]	A	G	9.184e^-4	0.948	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
X	16840668	X_16840668_SNP [dm3] X_16946635_SNP [dm6]	A	G	9.232e^-4	0.948	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	3046853	3R_3046853_SNP [dm3] 3R_7221131_SNP [dm6]	G	C	9.241e^-4	0.948	INTERGENIC
3L	8273657	3L_8273657_SNP [dm3] 3L_8280557_SNP [dm6]	A	G	9.255e^-4	0.948	SYNONYMOUS_CODING Dscam4
X	7732439	X_7732439_SNP [dm3] X_7838406_SNP [dm6]	G	T	9.255e^-4	0.948	INTRON CG1402
X	4264400	X_4264400_INS [dm3] X_4370367_INS [dm6]	C	CGAC	9.265e^-4	0.948	UTR_3_PRIME CG3626 INTRON CR43614
3L	7642572	3L_7642572_INS [dm3] 3L_7649472_INS [dm6]	C	CTTCCTC	9.276e^-4	0.948	INTERGENIC
3L	3175736	3L_3175736_SNP [dm3] 3L_3175736_SNP [dm6]	C	T	9.289e^-4	0.948	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
3L	3175748	3L_3175748_SNP [dm3] 3L_3175748_SNP [dm6]	G	A	9.289e^-4	0.948	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
2L	2526153	2L_2526153_SNP [dm3] 2L_2526153_SNP [dm6]	T	A	9.308e^-4	0.948	INTERGENIC
2R	16414935	2R_16414935_SNP [dm3] 2R_20527430_SNP [dm6]	T	C	9.319e^-4	0.948	DOWNSTREAM CG13422 INTERGENIC
X	17254044	X_17254044_SNP [dm3] X_17360011_SNP [dm6]	T	G	9.327e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19470402	3L_19470402_SNP [dm3] 3L_19477302_SNP [dm6]	A	T	9.434e^-4	0.948	UPSTREAM CR42842 DOWNSTREAM CR32207 & 1 other INTRON CR32207	transposable element FlyBase
3L	19470404	3L_19470404_DEL [dm3] 3L_19477304_DEL [dm6]	AAACGTAGACGCAACACGAG...	A	9.434e^-4	0.948	UPSTREAM CR42842 DOWNSTREAM CR32207 & 1 other INTRON CR32207 EXON CR32207	transposable element FlyBase
3L	13367073	3L_13367073_SNP [dm3] 3L_13373973_SNP [dm6]	C	T	9.437e^-4	0.948	INTERGENIC
3L	11566313	3L_11566313_SNP [dm3] 3L_11573213_SNP [dm6]	G	C	9.438e^-4	0.948	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2L	13739899	2L_13739899_SNP [dm3] 2L_13739899_SNP [dm6]	T	G	9.460e^-4	0.948	INTERGENIC
2L	13739903	2L_13739903_SNP [dm3] 2L_13739903_SNP [dm6]	T	C	9.460e^-4	0.948	INTERGENIC
2L	13739905	2L_13739905_SNP [dm3] 2L_13739905_SNP [dm6]	C	T	9.460e^-4	0.948	INTERGENIC
2L	11128912	2L_11128912_SNP [dm3] 2L_11128912_SNP [dm6]	C	G	9.462e^-4	0.948	NON_SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38
2L	8999996	2L_8999996_SNP [dm3] 2L_8999996_SNP [dm6]	C	T	9.462e^-4	0.948	DOWNSTREAM Try29F INTERGENIC
X	5978220	X_5978220_SNP [dm3] X_6084187_SNP [dm6]	C	T	9.479e^-4	0.948	INTRON Mipp2 & 1 other
2L	13056247	2L_13056247_SNP [dm3] 2L_13056247_SNP [dm6]	G	A	9.515e^-4	0.948	INTRON CG9932
3R	16726316	3R_16726316_SNP [dm3] 3R_20900594_SNP [dm6]	C	T	9.533e^-4	0.948	INTERGENIC
X	7952006	X_7952006_SNP [dm3] X_8057973_SNP [dm6]	T	A	9.548e^-4	0.948	INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	7953814	X_7953814_SNP [dm3] X_8059781_SNP [dm6]	T	C	9.548e^-4	0.948	INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	9370460	3R_9370460_SNP [dm3] 3R_13544738_SNP [dm6]	A	G	9.552e^-4	0.948	INTRON CG31337
2L	5957733	2L_5957733_SNP [dm3] 2L_5957733_SNP [dm6]	C	T	9.554e^-4	0.948	UPSTREAM CG13998 DOWNSTREAM Vm26Ac & 1 other INTERGENIC
2R	13876607	2R_13876607_SNP [dm3] 2R_17989102_SNP [dm6]	T	A	9.568e^-4	0.948	INTRON dpr13
X	12451490	X_12451490_DEL [dm3] X_12557457_DEL [dm6]	AA	A	9.569e^-4	0.948	INTRON CG43921
2R	16062002	2R_16062002_SNP [dm3] 2R_20174497_SNP [dm6]	A	T	9.570e^-4	0.948	INTERGENIC
2R	16062077	2R_16062077_SNP [dm3] 2R_20174572_SNP [dm6]	T	C	9.570e^-4	0.948	INTERGENIC
2R	19539162	2R_19539162_SNP [dm3] 2R_23651639_SNP [dm6]	A	G	9.570e^-4	0.948	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15153926	3R_15153926_SNP [dm3] 3R_19328204_SNP [dm6]	T	C	9.572e^-4	0.948	UPSTREAM CR44175 INTERGENIC
2R	12187839	2R_12187839_DEL [dm3] 2R_16300334_DEL [dm6]	AAA	A	9.598e^-4	0.948	EXON CR45232
X	14324326	X_14324326_SNP [dm3] X_14430293_SNP [dm6]	G	A	9.626e^-4	0.948	INTRON dpr8
3L	14522910	3L_14522910_SNP [dm3] 3L_14529810_SNP [dm6]	T	C	9.643e^-4	0.948	INTRON bbg
3L	14522936	3L_14522936_SNP [dm3] 3L_14529836_SNP [dm6]	G	A	9.643e^-4	0.948	INTRON bbg
3L	13613054	3L_13613054_SNP [dm3] 3L_13619954_SNP [dm6]	A	G	9.653e^-4	0.948	UPSTREAM mir-289 INTRON bru-3
3L	10014086	3L_10014086_SNP [dm3] 3L_10020986_SNP [dm6]	G	A	9.658e^-4	0.948	INTRON dpr6
3L	10014093	3L_10014093_SNP [dm3] 3L_10020993_SNP [dm6]	G	T	9.658e^-4	0.948	INTRON dpr6
2R	14418848	2R_14418848_SNP [dm3] 2R_18531343_SNP [dm6]	A	G	9.658e^-4	0.948	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14420948	2R_14420948_SNP [dm3] 2R_18533443_SNP [dm6]	C	A	9.658e^-4	0.948	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14420963	2R_14420963_SNP [dm3] 2R_18533458_SNP [dm6]	A	G	9.658e^-4	0.948	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14421050	2R_14421050_SNP [dm3] 2R_18533545_SNP [dm6]	A	T	9.658e^-4	0.948	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14423411	2R_14423411_DEL [dm3] 2R_18535906_DEL [dm6]	AACAAGAGTGGC...	A	9.658e^-4	0.948	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17936236	2R_17936236_SNP [dm3] 2R_22048731_SNP [dm6]	A	C	9.679e^-4	0.948	INTERGENIC
X	14044850	X_14044850_SNP [dm3] X_14150817_SNP [dm6]	T	A	9.679e^-4	0.948	DOWNSTREAM CG12479 INTERGENIC
X	14044856	X_14044856_MNP [dm3] X_14150823_MNP [dm6]	ACT	TTA	9.679e^-4	0.948	DOWNSTREAM CG12479 INTERGENIC
2L	6401479	2L_6401479_SNP [dm3] 2L_6401479_SNP [dm6]	T	C	9.699e^-4	0.948	INTRON CG42368
2L	7513895	2L_7513895_INS [dm3] 2L_7513895_INS [dm6]	C	CAC	9.712e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4766336	X_4766336_SNP [dm3] X_4872303_SNP [dm6]	G	T	9.714e^-4	0.948	INTRON CG42594
2L	20874493	2L_20874493_INS [dm3] 2L_20874493_INS [dm6]	A	AAGCTAGAA	9.715e^-4	0.948	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	593767	3R_593767_SNP [dm3] 3R_4768045_SNP [dm6]	A	G	9.718e^-4	0.948	SYNONYMOUS_CODING CG44098 INTRON atms & 1 other
2L	19090526	2L_19090526_SNP [dm3] 2L_19090526_SNP [dm6]	T	G	9.719e^-4	0.948	INTRON Lim3	TF binding site mE1_TFBS_HSA
2L	11514958	2L_11514958_SNP [dm3] 2L_11514958_SNP [dm6]	G	A	9.728e^-4	0.948	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16370769	2L_16370769_SNP [dm3] 2L_16370769_SNP [dm6]	A	T	9.728e^-4	0.948	INTERGENIC
2R	16770330	2R_16770330_INS [dm3] 2R_20882825_INS [dm6]	A	AGTGGTACTGATA...	9.728e^-4	0.948	DOWNSTREAM otp & 1 other INTERGENIC
X	12136609	X_12136609_SNP [dm3] X_12242576_SNP [dm6]	A	G	9.733e^-4	0.948	INTRON Ten-a
3R	18841845	3R_18841845_SNP [dm3] 3R_23016123_SNP [dm6]	A	T	9.765e^-4	0.948	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7837720	3L_7837720_SNP [dm3] 3L_7844620_SNP [dm6]	C	A	9.794e^-4	0.948	INTRON Pdp1	regulatory region REDfly_CRMs
2R	12462845	2R_12462845_SNP [dm3] 2R_16575340_SNP [dm6]	T	A	9.796e^-4	0.948	SPLICE_SITE_ACCEPTOR CG8317 START_GAINED CG8317 UTR_5_PRIME CG8317 INTRON CG8317	TF binding site mE1_TFBS_inv
2L	6690585	2L_6690585_SNP [dm3] 2L_6690585_SNP [dm6]	A	T	9.809e^-4	0.948	INTRON Tsp
2L	1981578	2L_1981578_SNP [dm3] 2L_1981578_SNP [dm6]	G	A	9.842e^-4	0.948	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	1981673	2L_1981673_SNP [dm3] 2L_1981673_SNP [dm6]	C	G	9.842e^-4	0.948	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	3524811	2L_3524811_SNP [dm3] 2L_3524811_SNP [dm6]	A	T	9.842e^-4	0.948	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	3524823	2L_3524823_SNP [dm3] 2L_3524823_SNP [dm6]	A	C	9.842e^-4	0.948	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	3524825	2L_3524825_SNP [dm3] 2L_3524825_SNP [dm6]	T	A	9.842e^-4	0.948	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	7518247	2L_7518247_SNP [dm3] 2L_7518247_SNP [dm6]	G	A	9.842e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7518269	2L_7518269_SNP [dm3] 2L_7518269_SNP [dm6]	C	T	9.842e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7518336	2L_7518336_SNP [dm3] 2L_7518336_SNP [dm6]	A	C	9.842e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7522417	2L_7522417_INS [dm3] 2L_7522417_INS [dm6]	T	TAT	9.842e^-4	0.948	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10315761	2R_10315761_SNP [dm3] 2R_14428256_SNP [dm6]	A	G	9.842e^-4	0.948	SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
2R	17239616	2R_17239616_SNP [dm3] 2R_21352111_SNP [dm6]	G	C	9.842e^-4	0.948	INTERGENIC
2R	2950581	2R_2950581_SNP [dm3] 2R_7063076_SNP [dm6]	G	T	9.842e^-4	0.948	SYNONYMOUS_CODING Tsp42Eq	insulator Insulator_Class_II.mE01
2R	2950757	2R_2950757_SNP [dm3] 2R_7063252_SNP [dm6]	G	A	9.842e^-4	0.948	SYNONYMOUS_CODING Tsp42Eq
2R	6347511	2R_6347511_SNP [dm3] 2R_10460006_SNP [dm6]	C	G	9.842e^-4	0.948	INTRON Galphao
2R	6875335	2R_6875335_SNP [dm3] 2R_10987830_SNP [dm6]	C	G	9.842e^-4	0.948	INTRON luna
2R	7470793	2R_7470793_SNP [dm3] 2R_11583288_SNP [dm6]	A	T	9.842e^-4	0.948	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9135702	2R_9135702_SNP [dm3] 2R_13248197_SNP [dm6]	T	A	9.842e^-4	0.948	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2R	9137219	2R_9137219_SNP [dm3] 2R_13249714_SNP [dm6]	A	G	9.842e^-4	0.948	DOWNSTREAM Mp20 INTRON CG4712
3L	5338960	3L_5338960_SNP [dm3] 3L_5345860_SNP [dm6]	A	G	9.842e^-4	0.948	SYNONYMOUS_CODING lama
3L	5385037	3L_5385037_DEL [dm3] 3L_5391937_DEL [dm6]	TC	T	9.842e^-4	0.948	INTERGENIC
3L	5385043	3L_5385043_SNP [dm3] 3L_5391943_SNP [dm6]	T	G	9.842e^-4	0.948	INTERGENIC
3L	5385081	3L_5385081_SNP [dm3] 3L_5391981_SNP [dm6]	T	C	9.842e^-4	0.948	INTERGENIC
X	14016316	X_14016316_SNP [dm3] X_14122283_SNP [dm6]	T	A	9.842e^-4	0.948	INTERGENIC
X	4124400	X_4124400_SNP [dm3] X_4230367_SNP [dm6]	A	G	9.842e^-4	0.948	INTERGENIC
3L	6287105	3L_6287105_SNP [dm3] 3L_6294005_SNP [dm6]	A	T	9.845e^-4	0.948	INTERGENIC
2L	12088943	2L_12088943_SNP [dm3] 2L_12088943_SNP [dm6]	C	T	9.847e^-4	0.948	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21694714	3R_21694714_SNP [dm3] 3R_25868992_SNP [dm6]	T	C	9.856e^-4	0.948	INTRON CG5890	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9197539	2R_9197539_SNP [dm3] 2R_13310034_SNP [dm6]	T	C	9.866e^-4	0.948	INTERGENIC
X	21436428	X_21436428_SNP [dm3] X_21565401_SNP [dm6]	A	G	9.891e^-4	0.948	INTERGENIC
3L	19534996	3L_19534996_SNP [dm3] 3L_19541896_SNP [dm6]	C	A	9.892e^-4	0.948	SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad
3L	8273645	3L_8273645_SNP [dm3] 3L_8280545_SNP [dm6]	C	A	9.900e^-4	0.948	SYNONYMOUS_CODING Dscam4
3R	27772228	3R_27772228_SNP [dm3] 3R_31946506_SNP [dm6]	T	G	9.915e^-4	0.948	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3571641	3L_3571641_SNP [dm3] 3L_3571641_SNP [dm6]	A	C	9.924e^-4	0.948	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2L	3259769	2L_3259769_SNP [dm3] 2L_3259769_SNP [dm6]	T	C	9.970e^-4	0.948	INTERGENIC
2L	17781724	2L_17781724_SNP [dm3] 2L_17781724_SNP [dm6]	A	T	9.974e^-4	0.948	INTERGENIC
3L	5318710	3L_5318710_SNP [dm3] 3L_5325610_SNP [dm6]	T	A	9.974e^-4	0.948	INTERGENIC
3L	5318735	3L_5318735_SNP [dm3] 3L_5325635_SNP [dm6]	A	T	9.974e^-4	0.948	INTERGENIC
X	14755174	X_14755174_SNP [dm3] X_14861141_SNP [dm6]	C	T	9.974e^-4	0.948	INTRON Flo2
3L	5317746	3L_5317746_SNP [dm3] 3L_5324646_SNP [dm6]	A	G	9.988e^-4	0.948	INTERGENIC

By genomic position
Variant impact
Gene name

DAControl phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results