DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.208e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1901 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10204066	X_10204066_SNP [dm3] X_10310033_SNP [dm6]	G	T	1.566e^-7	0.294	UPSTREAM alpha-Man-I INTRON alpha-Man-I
X	10204071	X_10204071_SNP [dm3] X_10310038_SNP [dm6]	A	C	1.195e^-6	0.89	UPSTREAM alpha-Man-I INTRON alpha-Man-I
2L	905217	2L_905217_SNP [dm3] 2L_905217_SNP [dm6]	C	T	2.249e^-6	0.89	DOWNSTREAM CR45261 INTERGENIC
X	10203656	X_10203656_SNP [dm3] X_10309623_SNP [dm6]	A	G	2.840e^-6	0.89	UPSTREAM alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5613631	3L_5613631_SNP [dm3] 3L_5620531_SNP [dm6]	C	T	4.405e^-6	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	10203229	X_10203229_SNP [dm3] X_10309196_SNP [dm6]	T	A	5.216e^-6	0.89	UPSTREAM alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2486804	3L_2486804_SNP [dm3] 3L_2486804_SNP [dm6]	T	C	5.519e^-6	0.89	INTRON CG45186	TF binding site BDTNP1_TFBS_dl
X	10202727	X_10202727_SNP [dm3] X_10308694_SNP [dm6]	A	G	5.605e^-6	0.89	UTR_5_PRIME alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12245826	X_12245826_SNP [dm3] X_12351793_SNP [dm6]	A	G	5.636e^-6	0.89	INTERGENIC
3R	26693181	3R_26693181_SNP [dm3] 3R_30867459_SNP [dm6]	G	A	6.270e^-6	0.89	UPSTREAM Cpr100A INTERGENIC
3L	10820424	3L_10820424_DEL [dm3] 3L_10827324_DEL [dm6]	GTGTGTG	G	6.567e^-6	0.89	INTERGENIC
X	18215848	X_18215848_SNP [dm3] X_18321815_SNP [dm6]	C	A	6.731e^-6	0.89	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15308095	2R_15308095_SNP [dm3] 2R_19420590_SNP [dm6]	C	A	7.404e^-6	0.89	INTRON hts	TF binding site BDTNP1_TFBS_dl
3R	15429801	3R_15429801_SNP [dm3] 3R_19604079_SNP [dm6]	G	A	8.392e^-6	0.89	UTR_5_PRIME CG7342
X	15467790	X_15467790_SNP [dm3] X_15573757_SNP [dm6]	G	A	9.044e^-6	0.89	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	9.473e^-6	0.89	INTRON tinc	TF binding site mE1_TFBS_inv
X	3124079	X_3124079_INS [dm3] X_3230046_INS [dm6]	C	CC	1.178e^-5	0.89	INTRON dnc
3L	7861973	3L_7861973_DEL [dm3] 3L_7868873_DEL [dm6]	CT	C	1.250e^-5	0.89	UPSTREAM CG32365 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17972810	3R_17972810_SNP [dm3] 3R_22147088_SNP [dm6]	A	C	1.361e^-5	0.89	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	10512188	X_10512188_SNP [dm3] X_10618155_SNP [dm6]	A	G	1.374e^-5	0.89	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11127832	3L_11127832_SNP [dm3] 3L_11134732_SNP [dm6]	G	T	1.380e^-5	0.89	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
3R	26659834	3R_26659834_SNP [dm3] 3R_30834112_SNP [dm6]	G	A	1.385e^-5	0.89	INTRON CG15544
3R	26659883	3R_26659883_SNP [dm3] 3R_30834161_SNP [dm6]	C	T	1.385e^-5	0.89	INTRON CG15544
3R	2350925	3R_2350925_DEL [dm3] 3R_6525203_DEL [dm6]	GTG	AA	1.396e^-5	0.89	INTERGENIC
3R	17972821	3R_17972821_SNP [dm3] 3R_22147099_SNP [dm6]	T	C	1.486e^-5	0.89	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7877829	3L_7877829_SNP [dm3] 3L_7884729_SNP [dm6]	G	A	1.505e^-5	0.89	INTRON CG32365
3R	5725761	3R_5725761_SNP [dm3] 3R_9900039_SNP [dm6]	T	G	1.566e^-5	0.89	INTRON Glut4EF
2R	14795174	2R_14795174_SNP [dm3] 2R_18907669_SNP [dm6]	C	G	1.588e^-5	0.89	INTRON sano	TF binding site mE1_TFBS_cad
2R	18573438	2R_18573438_DEL [dm3] 2R_22685933_DEL [dm6]	TATT	T	1.613e^-5	0.89	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17972809	3R_17972809_SNP [dm3] 3R_22147087_SNP [dm6]	A	T	1.640e^-5	0.89	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	5613313	3L_5613313_SNP [dm3] 3L_5620213_SNP [dm6]	A	C	1.658e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5522530	2L_5522530_SNP [dm3] 2L_5522530_SNP [dm6]	T	C	1.767e^-5	0.89	SYNONYMOUS_CODING CG7371
3L	7877628	3L_7877628_SNP [dm3] 3L_7884528_SNP [dm6]	T	C	1.778e^-5	0.89	INTRON CG32365
X	16052034	X_16052034_SNP [dm3] X_16158001_SNP [dm6]	G	A	1.807e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14609240	2R_14609240_SNP [dm3] 2R_18721735_SNP [dm6]	C	A	1.810e^-5	0.89	INTRON Hs3st-A
3R	18711937	3R_18711937_SNP [dm3] 3R_22886215_SNP [dm6]	G	A	2.024e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23492557	3R_23492557_SNP [dm3] 3R_27666835_SNP [dm6]	T	C	2.161e^-5	0.89	INTRON unc80
3L	10737194	3L_10737194_SNP [dm3] 3L_10744094_SNP [dm6]	T	A	2.334e^-5	0.89	INTERGENIC
3L	10736424	3L_10736424_SNP [dm3] 3L_10743324_SNP [dm6]	A	T	2.408e^-5	0.89	INTERGENIC	TF binding site mE1_TFBS_Trl
X	18215510	X_18215510_SNP [dm3] X_18321477_SNP [dm6]	T	C	2.412e^-5	0.89	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18506106	3L_18506106_SNP [dm3] 3L_18513006_SNP [dm6]	C	A	2.475e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12262583	3L_12262583_SNP [dm3] 3L_12269483_SNP [dm6]	A	G	2.480e^-5	0.89	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
2R	14010302	2R_14010302_SNP [dm3] 2R_18122797_SNP [dm6]	C	G	2.534e^-5	0.89	NON_SYNONYMOUS_CODING stau UTR_5_PRIME stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11159918	3R_11159918_SNP [dm3] 3R_15334196_SNP [dm6]	G	A	2.627e^-5	0.89	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26704997	3R_26704997_SNP [dm3] 3R_30879275_SNP [dm6]	C	T	2.642e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2683796	2R_2683796_SNP [dm3] 2R_6796291_SNP [dm6]	T	C	2.672e^-5	0.89	INTRON Epac
2L	9251347	2L_9251347_SNP [dm3] 2L_9251347_SNP [dm6]	G	A	2.765e^-5	0.89	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2R	2683863	2R_2683863_SNP [dm3] 2R_6796358_SNP [dm6]	C	T	2.774e^-5	0.89	INTRON Epac
3L	7039334	3L_7039334_SNP [dm3] 3L_7046234_SNP [dm6]	A	G	2.789e^-5	0.89	INTRON Mp
3R	26692750	3R_26692750_SNP [dm3] 3R_30867028_SNP [dm6]	C	T	2.877e^-5	0.89	UPSTREAM Cpr100A INTERGENIC
2R	2683849	2R_2683849_SNP [dm3] 2R_6796344_SNP [dm6]	T	A	2.913e^-5	0.89	INTRON Epac
3R	26692742	3R_26692742_DEL [dm3] 3R_30867020_DEL [dm6]	CTCTT	C	3.062e^-5	0.89	UPSTREAM Cpr100A INTERGENIC
3R	26696911	3R_26696911_SNP [dm3] 3R_30871189_SNP [dm6]	G	T	3.062e^-5	0.89	NON_SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26704326	3R_26704326_SNP [dm3] 3R_30878604_SNP [dm6]	A	G	3.062e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26704340	3R_26704340_SNP [dm3] 3R_30878618_SNP [dm6]	A	G	3.062e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26704353	3R_26704353_SNP [dm3] 3R_30878631_SNP [dm6]	C	A	3.062e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26704811	3R_26704811_SNP [dm3] 3R_30879089_SNP [dm6]	A	C	3.062e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12016575	2L_12016575_SNP [dm3] 2L_12016575_SNP [dm6]	G	A	3.079e^-5	0.89	INTRON CG6734	TF binding site mE1_TFBS_cad
3R	14869719	3R_14869719_SNP [dm3] 3R_19043997_SNP [dm6]	G	A	3.092e^-5	0.89	SYNONYMOUS_CODING CG6026 DOWNSTREAM cdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2485006	3L_2485006_SNP [dm3] 3L_2485006_SNP [dm6]	G	A	3.093e^-5	0.89	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19728013	X_19728013_SNP [dm3] X_19833980_SNP [dm6]	G	A	3.151e^-5	0.89	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21057156	3L_21057156_SNP [dm3] 3L_21064056_SNP [dm6]	G	C	3.188e^-5	0.89	UTR_5_PRIME siz INTRON siz
3L	8074949	3L_8074949_SNP [dm3] 3L_8081849_SNP [dm6]	A	G	3.399e^-5	0.89	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10382345	3L_10382345_INS [dm3] 3L_10389245_INS [dm6]	A	AA	3.458e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10210601	X_10210601_SNP [dm3] X_10316568_SNP [dm6]	T	C	3.495e^-5	0.89	INTRON alpha-Man-I
3R	14113387	3R_14113387_SNP [dm3] 3R_18287665_SNP [dm6]	G	A	3.731e^-5	0.89	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20469393	X_20469393_SNP [dm3] X_20598366_SNP [dm6]	T	C	3.756e^-5	0.89	INTRON RunxA
3L	12252840	3L_12252840_DEL [dm3] 3L_12259740_DEL [dm6]	CGTAT	C	3.783e^-5	0.89	INTRON app
2R	14609238	2R_14609238_SNP [dm3] 2R_18721733_SNP [dm6]	T	A	3.923e^-5	0.89	INTRON Hs3st-A
X	6436052	X_6436052_SNP [dm3] X_6542019_SNP [dm6]	C	T	3.984e^-5	0.89	INTRON CG34417
2R	3593672	2R_3593672_SNP [dm3] 2R_7706167_SNP [dm6]	G	T	4.007e^-5	0.89	INTRON tor	TF binding site mE1_TFBS_sens
3R	26705711	3R_26705711_SNP [dm3] 3R_30879989_SNP [dm6]	T	A	4.041e^-5	0.89	INTRON CG12071	TF binding site mE1_TFBS_HSA
3L	1646255	3L_1646255_SNP [dm3] 3L_1646255_SNP [dm6]	C	T	4.086e^-5	0.89	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15429803	3R_15429803_SNP [dm3] 3R_19604081_SNP [dm6]	A	G	4.097e^-5	0.89	UTR_5_PRIME CG7342
2L	5227843	2L_5227843_SNP [dm3] 2L_5227843_SNP [dm6]	G	A	4.124e^-5	0.89	INTRON tkv
3L	9490827	3L_9490827_SNP [dm3] 3L_9497727_SNP [dm6]	C	G	4.182e^-5	0.89	UPSTREAM path INTRON path
X	10202226	X_10202226_SNP [dm3] X_10308193_SNP [dm6]	C	T	4.206e^-5	0.89	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	3531469	2R_3531469_SNP [dm3] 2R_7643964_SNP [dm6]	C	G	4.221e^-5	0.89	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	4947709	3L_4947709_SNP [dm3] 3L_4947709_SNP [dm6]	C	T	4.268e^-5	0.89	INTRON Con
2L	2483881	2L_2483881_DEL [dm3] 2L_2483881_DEL [dm6]	ACACACA	A	4.347e^-5	0.89	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	26705029	3R_26705029_SNP [dm3] 3R_30879307_SNP [dm6]	A	T	4.374e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2484953	3L_2484953_SNP [dm3] 3L_2484953_SNP [dm6]	C	A	4.498e^-5	0.89	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19077000	X_19077000_SNP [dm3] X_19182967_SNP [dm6]	T	A	4.543e^-5	0.89	UPSTREAM CG33253 DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8521070	3R_8521070_SNP [dm3] 3R_12695348_SNP [dm6]	G	A	4.694e^-5	0.89	UTR_5_PRIME NijC UPSTREAM CG14391 & 1 other
2L	2738720	2L_2738720_SNP [dm3] 2L_2738720_SNP [dm6]	C	T	4.791e^-5	0.89	SYNONYMOUS_CODING CG31689
3L	9710304	3L_9710304_SNP [dm3] 3L_9717204_SNP [dm6]	G	A	4.850e^-5	0.89	UTR_3_PRIME vsg DOWNSTREAM CG18178 & 1 other
3L	18506110	3L_18506110_DEL [dm3] 3L_18513010_DEL [dm6]	TTTGGTGTGCCCCTAAGT...	T	4.851e^-5	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15429856	3R_15429856_SNP [dm3] 3R_19604134_SNP [dm6]	A	G	4.869e^-5	0.89	SYNONYMOUS_CODING CG7342	TF binding site mE1_TFBS_sens
3R	26692739	3R_26692739_SNP [dm3] 3R_30867017_SNP [dm6]	C	A	4.881e^-5	0.89	UPSTREAM Cpr100A INTERGENIC
3R	26692754	3R_26692754_SNP [dm3] 3R_30867032_SNP [dm6]	A	G	4.881e^-5	0.89	UPSTREAM Cpr100A INTERGENIC
3R	26697927	3R_26697927_SNP [dm3] 3R_30872205_SNP [dm6]	G	C	4.881e^-5	0.89	SPLICE_SITE_REGION CG15545 INTRON CG15545	TF binding site mE1_TFBS_cad
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	4.888e^-5	0.89	INTERGENIC
3L	832259	3L_832259_SNP [dm3] 3L_832259_SNP [dm6]	A	G	4.926e^-5	0.89	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 DOWNSTREAM snoRNA:Psi28S-3308 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1021517	3L_1021517_SNP [dm3] 3L_1021517_SNP [dm6]	A	T	4.960e^-5	0.89	INTRON trio
3L	8076321	3L_8076321_SNP [dm3] 3L_8083221_SNP [dm6]	A	G	4.974e^-5	0.89	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
X	10210609	X_10210609_SNP [dm3] X_10316576_SNP [dm6]	C	T	4.994e^-5	0.89	INTRON alpha-Man-I
X	10212146	X_10212146_SNP [dm3] X_10318113_SNP [dm6]	T	A	4.994e^-5	0.89	INTRON alpha-Man-I
X	20880955	X_20880955_SNP [dm3] X_21009928_SNP [dm6]	A	T	5.049e^-5	0.89	INTERGENIC
3L	11110566	3L_11110566_SNP [dm3] 3L_11117466_SNP [dm6]	G	A	5.061e^-5	0.89	SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2398346	3L_2398346_SNP [dm3] 3L_2398346_SNP [dm6]	T	A	5.083e^-5	0.89	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	26692725	3R_26692725_DEL [dm3] 3R_30867003_DEL [dm6]	ATTTTCCTTTT...	A	5.117e^-5	0.89	UPSTREAM Cpr100A INTERGENIC
3R	26704331	3R_26704331_SNP [dm3] 3R_30878609_SNP [dm6]	A	G	5.180e^-5	0.89	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	7877469	3L_7877469_SNP [dm3] 3L_7884369_SNP [dm6]	C	A	5.241e^-5	0.89	INTRON CG32365
2L	9357071	2L_9357071_SNP [dm3] 2L_9357071_SNP [dm6]	A	T	5.246e^-5	0.89	INTERGENIC
2L	9251474	2L_9251474_SNP [dm3] 2L_9251474_SNP [dm6]	A	T	5.310e^-5	0.89	UTR_3_PRIME borr UPSTREAM aust & 1 other
X	10211199	X_10211199_SNP [dm3] X_10317166_SNP [dm6]	C	T	5.362e^-5	0.89	INTRON alpha-Man-I
2R	8938792	2R_8938792_SNP [dm3] 2R_13051287_SNP [dm6]	C	A	5.398e^-5	0.89	INTERGENIC
3L	1647158	3L_1647158_SNP [dm3] 3L_1647158_SNP [dm6]	T	C	5.421e^-5	0.89	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15466452	X_15466452_SNP [dm3] X_15572419_SNP [dm6]	T	G	5.434e^-5	0.89	NON_SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2796651	2L_2796651_SNP [dm3] 2L_2796651_SNP [dm6]	T	A	5.440e^-5	0.89	INTRON Syt1
X	14463494	X_14463494_SNP [dm3] X_14569461_SNP [dm6]	G	A	5.544e^-5	0.89	INTERGENIC
3R	11290718	3R_11290718_DEL [dm3] 3R_15464996_DEL [dm6]	TTTTGGTT	T	5.583e^-5	0.89	INTRON AdamTS-A
3R	26710522	3R_26710522_SNP [dm3] 3R_30884800_SNP [dm6]	G	T	5.647e^-5	0.89	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17190123	3L_17190123_SNP [dm3] 3L_17197023_SNP [dm6]	T	C	5.693e^-5	0.89	INTRON Rbp6
3R	8731084	3R_8731084_SNP [dm3] 3R_12905362_SNP [dm6]	A	G	5.707e^-5	0.89	INTERGENIC
3L	14366400	3L_14366400_SNP [dm3] 3L_14373300_SNP [dm6]	C	A	5.710e^-5	0.89	INTERGENIC
3R	8712818	3R_8712818_SNP [dm3] 3R_12887096_SNP [dm6]	C	T	5.812e^-5	0.89	INTERGENIC
2R	3163909	2R_3163909_SNP [dm3] 2R_7276404_SNP [dm6]	C	T	5.821e^-5	0.89	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17581349	X_17581349_SNP [dm3] X_17687316_SNP [dm6]	G	T	5.832e^-5	0.89	INTRON chas	TF binding site BDTNP1_TFBS_dl
3R	17203094	3R_17203094_SNP [dm3] 3R_21377372_SNP [dm6]	A	T	5.837e^-5	0.89	UTR_5_PRIME mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	15467545	X_15467545_SNP [dm3] X_15573512_SNP [dm6]	A	C	5.879e^-5	0.89	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23019196	3R_23019196_SNP [dm3] 3R_27193474_SNP [dm6]	G	A	5.957e^-5	0.89	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	7877526	3L_7877526_SNP [dm3] 3L_7884426_SNP [dm6]	T	C	6.025e^-5	0.89	INTRON CG32365
2L	3635546	2L_3635546_SNP [dm3] 2L_3635546_SNP [dm6]	T	C	6.075e^-5	0.89	INTRON for
2R	13673835	2R_13673835_SNP [dm3] 2R_17786330_SNP [dm6]	G	T	6.078e^-5	0.89	NON_SYNONYMOUS_CODING aft
3L	7877514	3L_7877514_SNP [dm3] 3L_7884414_SNP [dm6]	G	A	6.171e^-5	0.89	INTRON CG32365
2R	3495140	2R_3495140_SNP [dm3] 2R_7607635_SNP [dm6]	A	G	6.267e^-5	0.89	INTRON CG1358
3R	13928376	3R_13928376_SNP [dm3] 3R_18102654_SNP [dm6]	T	A	6.322e^-5	0.89	INTRON sr
3L	7877528	3L_7877528_SNP [dm3] 3L_7884428_SNP [dm6]	G	A	6.463e^-5	0.89	INTRON CG32365
3R	24666916	3R_24666916_SNP [dm3] 3R_28841194_SNP [dm6]	T	C	6.478e^-5	0.89	INTRON Apc
3L	8197411	3L_8197411_SNP [dm3] 3L_8204311_SNP [dm6]	T	C	6.496e^-5	0.89	DOWNSTREAM CG13679 INTERGENIC
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	6.520e^-5	0.89	INTRON SP2637	TF binding site BDTNP1_TFBS_da
2L	9357074	2L_9357074_SNP [dm3] 2L_9357074_SNP [dm6]	C	A	6.552e^-5	0.89	INTERGENIC
3L	9561591	3L_9561591_SNP [dm3] 3L_9568491_SNP [dm6]	C	T	6.556e^-5	0.89	INTRON CG42673
2L	9251338	2L_9251338_SNP [dm3] 2L_9251338_SNP [dm6]	A	T	6.582e^-5	0.89	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2L	9251341	2L_9251341_SNP [dm3] 2L_9251341_SNP [dm6]	A	G	6.582e^-5	0.89	UPSTREAM aust DOWNSTREAM borr EXON CR43734
3L	7877494	3L_7877494_SNP [dm3] 3L_7884394_SNP [dm6]	G	T	6.591e^-5	0.89	INTRON CG32365
X	737715	X_737715_SNP [dm3] X_843682_SNP [dm6]	A	T	6.604e^-5	0.89	INTRON CG43867	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	5960690	X_5960690_SNP [dm3] X_6066657_SNP [dm6]	A	T	6.632e^-5	0.89	UPSTREAM CG43115 INTERGENIC
3L	7877523	3L_7877523_SNP [dm3] 3L_7884423_SNP [dm6]	T	A	6.743e^-5	0.89	INTRON CG32365
3L	7877537	3L_7877537_INS [dm3] 3L_7884437_INS [dm6]	G	TGTGTAATGCAATTTT...	6.820e^-5	0.89	INTRON CG32365
X	5960684	X_5960684_DEL [dm3] X_6066651_DEL [dm6]	TTGT	T	6.898e^-5	0.89	UPSTREAM CG43115 INTERGENIC
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	6.902e^-5	0.89	INTERGENIC
3L	915516	3L_915516_SNP [dm3] 3L_915516_SNP [dm6]	C	T	6.914e^-5	0.89	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18215943	X_18215943_SNP [dm3] X_18321910_SNP [dm6]	C	T	6.922e^-5	0.89	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_inv
2R	17043725	2R_17043725_SNP [dm3] 2R_21156220_SNP [dm6]	T	C	6.934e^-5	0.89	INTRON CG30389
2R	17864116	2R_17864116_SNP [dm3] 2R_21976611_SNP [dm6]	A	C	7.076e^-5	0.894	UPSTREAM Gr58c DOWNSTREAM CG9304 INTERGENIC
3L	7859004	3L_7859004_SNP [dm3] 3L_7865904_SNP [dm6]	C	T	7.111e^-5	0.894	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	7.172e^-5	0.894	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2R	13341525	2R_13341525_SNP [dm3] 2R_17454020_SNP [dm6]	G	A	7.233e^-5	0.894	INTRON CG10764
X	737712	X_737712_SNP [dm3] X_843679_SNP [dm6]	A	T	7.257e^-5	0.894	INTRON CG43867	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	13424855	X_13424855_SNP [dm3] X_13530822_SNP [dm6]	A	T	7.281e^-5	0.894	UPSTREAM CG44428 INTERGENIC
3L	7877596	3L_7877596_DEL [dm3] 3L_7884496_DEL [dm6]	GTATTTTGTTAGATTAAAGT...	G	7.307e^-5	0.894	INTRON CG32365
2R	3699682	2R_3699682_SNP [dm3] 2R_7812177_SNP [dm6]	A	G	7.347e^-5	0.894	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	12251728	3L_12251728_SNP [dm3] 3L_12258628_SNP [dm6]	A	G	7.411e^-5	0.896	INTRON app
3R	25008602	3R_25008602_SNP [dm3] 3R_29182880_SNP [dm6]	G	A	7.458e^-5	0.896	INTRON CG14509
3R	26673129	3R_26673129_SNP [dm3] 3R_30847407_SNP [dm6]	A	G	7.626e^-5	0.902	INTERGENIC
3R	15428344	3R_15428344_DEL [dm3] 3R_19602622_DEL [dm6]	TGGCTGAGAACACTGAGACT...	T	7.633e^-5	0.902	UTR_3_PRIME CG7333 UPSTREAM CG7342 DOWNSTREAM CG7333 INTRAGENIC CG7333 INTERGENIC
X	19773162	X_19773162_SNP [dm3] X_19879129_SNP [dm6]	C	T	7.649e^-5	0.902	INTRON Hers	TF binding site BDTNP1_TFBS_da
2L	14094485	2L_14094485_SNP [dm3] 2L_14094485_SNP [dm6]	A	T	7.726e^-5	0.905	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	17584787	X_17584787_SNP [dm3] X_17690754_SNP [dm6]	C	G	7.879e^-5	0.913	INTRON chas
3R	19155381	3R_19155381_SNP [dm3] 3R_23329659_SNP [dm6]	G	A	7.925e^-5	0.913	INTRON pnt
X	18478538	X_18478538_SNP [dm3] X_18584505_SNP [dm6]	C	A	7.941e^-5	0.913	INTERGENIC
3R	24668741	3R_24668741_SNP [dm3] 3R_28843019_SNP [dm6]	G	C	8.062e^-5	0.913	UPSTREAM Apc INTRON Apc
3L	13684643	3L_13684643_SNP [dm3] 3L_13691543_SNP [dm6]	G	T	8.077e^-5	0.913	INTRON bru-3
3R	11159975	3R_11159975_SNP [dm3] 3R_15334253_SNP [dm6]	A	G	8.144e^-5	0.913	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	3952627	3R_3952627_SNP [dm3] 3R_8126905_SNP [dm6]	T	A	8.197e^-5	0.913	UPSTREAM CG9667 INTRON Gie	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8513005	3R_8513005_DEL [dm3] 3R_12687283_DEL [dm6]	GG	G	8.234e^-5	0.913	INTRON kar
3R	13928374	3R_13928374_SNP [dm3] 3R_18102652_SNP [dm6]	G	A	8.284e^-5	0.913	INTRON sr
3R	19922191	3R_19922191_SNP [dm3] 3R_24096469_SNP [dm6]	C	T	8.335e^-5	0.913	INTRON 4EHP
2L	10105090	2L_10105090_SNP [dm3] 2L_10105090_SNP [dm6]	A	T	8.344e^-5	0.913	INTRON CG44153 & 1 other
2R	17430183	2R_17430183_SNP [dm3] 2R_21542678_SNP [dm6]	A	G	8.412e^-5	0.913	INTRON Egfr
3L	11129449	3L_11129449_DEL [dm3] 3L_11136349_DEL [dm6]	CTGGGTG	C	8.428e^-5	0.913	DOWNSTREAM CG14143 INTRON CG32082
3R	17972803	3R_17972803_SNP [dm3] 3R_22147081_SNP [dm6]	A	C	8.512e^-5	0.913	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8123783	3R_8123783_SNP [dm3] 3R_12298061_SNP [dm6]	A	G	8.724e^-5	0.913	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15467767	X_15467767_SNP [dm3] X_15573734_SNP [dm6]	G	A	8.764e^-5	0.913	SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10080592	3R_10080592_SNP [dm3] 3R_14254870_SNP [dm6]	G	A	8.929e^-5	0.913	INTRON Aats-met
3R	26692759	3R_26692759_DEL [dm3] 3R_30867037_DEL [dm6]	TGCCATT	T	8.932e^-5	0.913	UPSTREAM Cpr100A INTERGENIC
3R	24668737	3R_24668737_SNP [dm3] 3R_28843015_SNP [dm6]	A	G	8.939e^-5	0.913	UPSTREAM Apc INTRON Apc
3L	7877588	3L_7877588_DEL [dm3] 3L_7884488_DEL [dm6]	ACATA	A	8.985e^-5	0.913	INTRON CG32365
X	15466467	X_15466467_SNP [dm3] X_15572434_SNP [dm6]	G	C	9.061e^-5	0.913	SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14113363	3R_14113363_SNP [dm3] 3R_18287641_SNP [dm6]	G	A	9.081e^-5	0.913	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4119687	2L_4119687_SNP [dm3] 2L_4119687_SNP [dm6]	G	A	9.143e^-5	0.913	UPSTREAM Sr-CIII INTERGENIC
3R	24674734	3R_24674734_SNP [dm3] 3R_28849012_SNP [dm6]	C	T	9.227e^-5	0.913	INTRON spg
3R	7018693	3R_7018693_SNP [dm3] 3R_11192971_SNP [dm6]	C	T	9.242e^-5	0.913	INTERGENIC
X	8224647	X_8224647_SNP [dm3] X_8330614_SNP [dm6]	G	A	9.317e^-5	0.913	INTRON nAChRalpha3	TF binding site mE1_TFBS_sbb
3R	12864669	3R_12864669_SNP [dm3] 3R_17038947_SNP [dm6]	C	A	9.412e^-5	0.913	NON_SYNONYMOUS_CODING CG18213
2R	3593768	2R_3593768_SNP [dm3] 2R_7706263_SNP [dm6]	G	A	9.462e^-5	0.913	SYNONYMOUS_CODING tor	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8938777	2R_8938777_SNP [dm3] 2R_13051272_SNP [dm6]	T	G	9.556e^-5	0.913	INTERGENIC
2L	5010016	2L_5010016_SNP [dm3] 2L_5010016_SNP [dm6]	T	A	9.578e^-5	0.913	NON_SYNONYMOUS_CODING CG31917 UTR_3_PRIME Tfb5 UPSTREAM Rtnl1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10202253	X_10202253_SNP [dm3] X_10308220_SNP [dm6]	C	T	9.646e^-5	0.913	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	12504724	3L_12504724_SNP [dm3] 3L_12511624_SNP [dm6]	C	T	9.743e^-5	0.913	SYNONYMOUS_CODING sti
3R	20281297	3R_20281297_DEL [dm3] 3R_24455575_DEL [dm6]	AATGAA	A	9.749e^-5	0.913	INTRON nAChRalpha1
3L	1021658	3L_1021658_SNP [dm3] 3L_1021658_SNP [dm6]	A	T	9.830e^-5	0.913	INTRON trio
3L	11127916	3L_11127916_INS [dm3] 3L_11134816_INS [dm6]	G	GTGGT	9.842e^-5	0.913	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
3L	7877519	3L_7877519_SNP [dm3] 3L_7884419_SNP [dm6]	C	T	1.016e^-4	0.913	INTRON CG32365
3R	12646956	3R_12646956_SNP [dm3] 3R_16821234_SNP [dm6]	G	T	1.018e^-4	0.913	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645799	3L_1645799_SNP [dm3] 3L_1645799_SNP [dm6]	A	G	1.025e^-4	0.913	SYNONYMOUS_CODING CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19727972	X_19727972_SNP [dm3] X_19833939_SNP [dm6]	G	C	1.026e^-4	0.913	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19160991	2R_19160991_SNP [dm3] 2R_23273468_SNP [dm6]	C	A	1.044e^-4	0.913	NON_SYNONYMOUS_CODING ord
2L	2169848	2L_2169848_SNP [dm3] 2L_2169848_SNP [dm6]	G	A	1.050e^-4	0.913	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	14114851	2L_14114851_SNP [dm3] 2L_14114851_SNP [dm6]	G	A	1.062e^-4	0.913	INTERGENIC
3L	17924982	3L_17924982_SNP [dm3] 3L_17931882_SNP [dm6]	G	T	1.064e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8706189	3R_8706189_SNP [dm3] 3R_12880467_SNP [dm6]	G	A	1.067e^-4	0.913	INTERGENIC
X	10061651	X_10061651_SNP [dm3] X_10167618_SNP [dm6]	C	T	1.069e^-4	0.913	INTRON CR44894 & 1 other
X	10061652	X_10061652_SNP [dm3] X_10167619_SNP [dm6]	C	A	1.069e^-4	0.913	INTRON CR44894 & 1 other
2R	8918161	2R_8918161_SNP [dm3] 2R_13030656_SNP [dm6]	T	G	1.075e^-4	0.913	INTERGENIC
2R	4180979	2R_4180979_SNP [dm3] 2R_8293474_SNP [dm6]	C	A	1.077e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11127855	3L_11127855_SNP [dm3] 3L_11134755_SNP [dm6]	C	T	1.079e^-4	0.913	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
3R	26704046	3R_26704046_SNP [dm3] 3R_30878324_SNP [dm6]	C	A	1.080e^-4	0.913	NON_SYNONYMOUS_CODING CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	11741320	2R_11741320_SNP [dm3] 2R_15853815_SNP [dm6]	G	A	1.080e^-4	0.913	UTR_3_PRIME tun DOWNSTREAM tun	TF binding site mE1_TFBS_HSA
3L	4110229	3L_4110229_SNP [dm3] 3L_4110229_SNP [dm6]	A	G	1.085e^-4	0.913	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11114571	2R_11114571_SNP [dm3] 2R_15227066_SNP [dm6]	T	C	1.087e^-4	0.913	INTRON Fs EXON CR44370
X	10202319	X_10202319_SNP [dm3] X_10308286_SNP [dm6]	T	C	1.096e^-4	0.913	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	14464054	X_14464054_SNP [dm3] X_14570021_SNP [dm6]	T	C	1.098e^-4	0.913	INTERGENIC
3L	2398347	3L_2398347_SNP [dm3] 3L_2398347_SNP [dm6]	T	A	1.103e^-4	0.913	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	24671183	3R_24671183_SNP [dm3] 3R_28845461_SNP [dm6]	G	A	1.105e^-4	0.913	UTR_5_PRIME spg UPSTREAM Apc INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9357063	2L_9357063_SNP [dm3] 2L_9357063_SNP [dm6]	T	A	1.107e^-4	0.913	INTERGENIC
2L	3148307	2L_3148307_SNP [dm3] 2L_3148307_SNP [dm6]	T	C	1.114e^-4	0.913	NON_SYNONYMOUS_CODING Mad	TF binding site mE1_TFBS_chinmo
2L	3221743	2L_3221743_SNP [dm3] 2L_3221743_SNP [dm6]	G	A	1.115e^-4	0.913	INTERGENIC
X	12907441	X_12907441_INS [dm3] X_13013408_INS [dm6]	A	AATAATATAAA...	1.121e^-4	0.913	INTRON rad
2L	3221726	2L_3221726_DEL [dm3] 2L_3221726_DEL [dm6]	TT	T	1.122e^-4	0.913	INTERGENIC
3R	27530136	3R_27530136_SNP [dm3] 3R_31704414_SNP [dm6]	A	C	1.127e^-4	0.913	DOWNSTREAM CR45052 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
2R	18443512	2R_18443512_SNP [dm3] 2R_22556007_SNP [dm6]	T	C	1.130e^-4	0.913	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14113396	3R_14113396_SNP [dm3] 3R_18287674_SNP [dm6]	T	C	1.135e^-4	0.913	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10061592	X_10061592_SNP [dm3] X_10167559_SNP [dm6]	C	A	1.139e^-4	0.913	INTRON CR44894 & 1 other
3R	12646958	3R_12646958_DEL [dm3] 3R_16821236_DEL [dm6]	TAATA	T	1.141e^-4	0.913	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26658393	3R_26658393_DEL [dm3] 3R_30832671_DEL [dm6]	AATATCTATAGA...	G	1.142e^-4	0.913	INTRON CG15544
3R	11160128	3R_11160128_SNP [dm3] 3R_15334406_SNP [dm6]	C	T	1.144e^-4	0.913	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9490900	3L_9490900_SNP [dm3] 3L_9497800_SNP [dm6]	A	T	1.144e^-4	0.913	UPSTREAM path INTRON path
3L	14082273	3L_14082273_SNP [dm3] 3L_14089173_SNP [dm6]	A	G	1.163e^-4	0.913	INTERGENIC
2R	7048479	2R_7048479_SNP [dm3] 2R_11160974_SNP [dm6]	G	A	1.164e^-4	0.913	INTRON shn & 1 other	TF binding site mE1_TFBS_inv
3R	23019151	3R_23019151_SNP [dm3] 3R_27193429_SNP [dm6]	C	T	1.165e^-4	0.913	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	17000293	2R_17000293_SNP [dm3] 2R_21112788_SNP [dm6]	T	C	1.171e^-4	0.913	INTRON ktub
2R	8938800	2R_8938800_SNP [dm3] 2R_13051295_SNP [dm6]	C	T	1.172e^-4	0.913	INTERGENIC
2R	3622539	2R_3622539_SNP [dm3] 2R_7735034_SNP [dm6]	A	C	1.174e^-4	0.913	INTRON CG18812
3L	9008547	3L_9008547_DEL [dm3] 3L_9015447_DEL [dm6]	TTGCCC	T	1.188e^-4	0.913	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4918222	2L_4918222_SNP [dm3] 2L_4918222_SNP [dm6]	T	C	1.190e^-4	0.913	INTRON hoe1
3L	1646707	3L_1646707_SNP [dm3] 3L_1646707_SNP [dm6]	A	G	1.193e^-4	0.913	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17042673	2R_17042673_SNP [dm3] 2R_21155168_SNP [dm6]	C	T	1.198e^-4	0.913	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12252691	3L_12252691_SNP [dm3] 3L_12259591_SNP [dm6]	G	A	1.204e^-4	0.913	INTRON app
2L	2539641	2L_2539641_SNP [dm3] 2L_2539641_SNP [dm6]	A	G	1.207e^-4	0.913	INTERGENIC
2R	10616882	2R_10616882_SNP [dm3] 2R_14729377_SNP [dm6]	G	A	1.208e^-4	0.913	INTERGENIC
3R	18844942	3R_18844942_SNP [dm3] 3R_23019220_SNP [dm6]	T	G	1.213e^-4	0.913	INTERGENIC
3L	7487189	3L_7487189_SNP [dm3] 3L_7494089_SNP [dm6]	C	A	1.222e^-4	0.913	SYNONYMOUS_CODING Cyp4d8 DOWNSTREAM Cyp316a1	TF binding site mE1_TFBS_cad
3L	2561380	3L_2561380_INS [dm3] 3L_2561380_INS [dm6]	T	TCT	1.226e^-4	0.913	INTRON msn
X	18211947	X_18211947_SNP [dm3] X_18317914_SNP [dm6]	A	T	1.226e^-4	0.913	INTRON CG6023
3L	11128099	3L_11128099_SNP [dm3] 3L_11134999_SNP [dm6]	G	T	1.227e^-4	0.913	START_LOST CG14143 DOWNSTREAM CG42575
3R	10078809	3R_10078809_SNP [dm3] 3R_14253087_SNP [dm6]	A	G	1.234e^-4	0.913	INTRON Aats-met
3L	7877550	3L_7877550_INS [dm3] 3L_7884450_INS [dm6]	A	ACAATTTAAA	1.239e^-4	0.913	INTRON CG32365
3R	26701591	3R_26701591_SNP [dm3] 3R_30875869_SNP [dm6]	T	A	1.239e^-4	0.913	NON_SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	1.242e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10077896	3R_10077896_SNP [dm3] 3R_14252174_SNP [dm6]	C	A	1.247e^-4	0.913	INTRON Aats-met
2R	16404150	2R_16404150_SNP [dm3] 2R_20516645_SNP [dm6]	G	A	1.250e^-4	0.913	INTERGENIC
3L	9642468	3L_9642468_SNP [dm3] 3L_9649368_SNP [dm6]	T	C	1.257e^-4	0.913	INTRON fry & 1 other
2R	12806930	2R_12806930_SNP [dm3] 2R_16919425_SNP [dm6]	A	C	1.258e^-4	0.913	INTERGENIC
2L	9357085	2L_9357085_SNP [dm3] 2L_9357085_SNP [dm6]	A	C	1.268e^-4	0.913	INTERGENIC
3L	5303950	3L_5303950_SNP [dm3] 3L_5310850_SNP [dm6]	T	C	1.269e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8920124	3L_8920124_INS [dm3] 3L_8927024_INS [dm6]	A	ACCAGTGCCAGCT...	1.275e^-4	0.913	INTRON Tsp66E
2L	3907591	2L_3907591_SNP [dm3] 2L_3907591_SNP [dm6]	C	T	1.275e^-4	0.913	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17973005	3R_17973005_SNP [dm3] 3R_22147283_SNP [dm6]	G	C	1.278e^-4	0.913	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	16052054	X_16052054_SNP [dm3] X_16158021_SNP [dm6]	C	T	1.279e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19536474	2R_19536474_SNP [dm3] 2R_23648951_SNP [dm6]	T	A	1.286e^-4	0.913	INTRON retn	TF binding site BDTNP1_TFBS_dl
2R	4076250	2R_4076250_SNP [dm3] 2R_8188745_SNP [dm6]	C	T	1.297e^-4	0.913	INTRON LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7456469	2L_7456469_SNP [dm3] 2L_7456469_SNP [dm6]	G	A	1.302e^-4	0.913	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26210024	3R_26210024_SNP [dm3] 3R_30384302_SNP [dm6]	G	C	1.313e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	8762770	3R_8762770_INS [dm3] 3R_12937048_INS [dm6]	A	AA	1.322e^-4	0.913	INTERGENIC
3L	11127820	3L_11127820_SNP [dm3] 3L_11134720_SNP [dm6]	T	C	1.341e^-4	0.913	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
X	18642836	X_18642836_SNP [dm3] X_18748803_SNP [dm6]	T	G	1.348e^-4	0.913	UPSTREAM CG12609 INTERGENIC
3L	1653392	3L_1653392_SNP [dm3] 3L_1653392_SNP [dm6]	A	G	1.350e^-4	0.913	SYNONYMOUS_CODING CG7970 UPSTREAM CG7967 DOWNSTREAM CG7971	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10823911	3L_10823911_SNP [dm3] 3L_10830811_SNP [dm6]	G	A	1.352e^-4	0.913	INTERGENIC
X	3124102	X_3124102_SNP [dm3] X_3230069_SNP [dm6]	C	T	1.353e^-4	0.913	INTRON dnc
3L	5659856	3L_5659856_SNP [dm3] 3L_5666756_SNP [dm6]	A	C	1.357e^-4	0.913	INTRON sif
X	12189443	X_12189443_SNP [dm3] X_12295410_SNP [dm6]	G	A	1.365e^-4	0.913	INTRON Ten-a
X	12189416	X_12189416_SNP [dm3] X_12295383_SNP [dm6]	T	G	1.369e^-4	0.913	INTRON Ten-a
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	1.371e^-4	0.913	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	25368800	3R_25368800_SNP [dm3] 3R_29543078_SNP [dm6]	C	T	1.376e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9246641	3L_9246641_SNP [dm3] 3L_9253541_SNP [dm6]	G	A	1.388e^-4	0.913	INTRON GluRIB
3R	8716156	3R_8716156_SNP [dm3] 3R_12890434_SNP [dm6]	T	C	1.391e^-4	0.913	INTERGENIC
3L	12252837	3L_12252837_SNP [dm3] 3L_12259737_SNP [dm6]	G	C	1.392e^-4	0.913	INTRON app
2L	16412279	2L_16412279_SNP [dm3] 2L_16412279_SNP [dm6]	A	G	1.404e^-4	0.913	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14113369	3R_14113369_SNP [dm3] 3R_18287647_SNP [dm6]	A	C	1.411e^-4	0.913	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9357079	2L_9357079_SNP [dm3] 2L_9357079_SNP [dm6]	C	T	1.412e^-4	0.913	INTERGENIC
2R	10265600	2R_10265600_SNP [dm3] 2R_14378095_SNP [dm6]	C	A	1.416e^-4	0.913	UPSTREAM Dh44-R1 INTERGENIC
2R	3696755	2R_3696755_SNP [dm3] 2R_7809250_SNP [dm6]	T	A	1.418e^-4	0.913	DOWNSTREAM CG1550 INTRON sax
3R	27010374	3R_27010374_SNP [dm3] 3R_31184652_SNP [dm6]	T	C	1.421e^-4	0.913	SYNONYMOUS_CODING mesh
3L	10736561	3L_10736561_SNP [dm3] 3L_10743461_SNP [dm6]	A	G	1.422e^-4	0.913	INTERGENIC
X	10061589	X_10061589_SNP [dm3] X_10167556_SNP [dm6]	C	A	1.423e^-4	0.913	INTRON CR44894 & 1 other
X	10061595	X_10061595_SNP [dm3] X_10167562_SNP [dm6]	A	G	1.423e^-4	0.913	INTRON CR44894 & 1 other
3L	634615	3L_634615_SNP [dm3] 3L_634615_SNP [dm6]	T	A	1.425e^-4	0.913	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	634616	3L_634616_DEL [dm3] 3L_634616_DEL [dm6]	TT	T	1.425e^-4	0.913	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2398351	3L_2398351_SNP [dm3] 3L_2398351_SNP [dm6]	A	T	1.427e^-4	0.913	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	3635567	2L_3635567_SNP [dm3] 2L_3635567_SNP [dm6]	A	G	1.435e^-4	0.913	INTRON for
3L	1646791	3L_1646791_SNP [dm3] 3L_1646791_SNP [dm6]	A	G	1.441e^-4	0.913	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8530466	3R_8530466_SNP [dm3] 3R_12704744_SNP [dm6]	G	T	1.442e^-4	0.913	UTR_3_PRIME Past1 UPSTREAM CG12279 DOWNSTREAM Past1 & 1 other
2R	17864128	2R_17864128_SNP [dm3] 2R_21976623_SNP [dm6]	T	C	1.442e^-4	0.913	UPSTREAM Gr58c DOWNSTREAM CG9304 INTERGENIC
X	19727759	X_19727759_SNP [dm3] X_19833726_SNP [dm6]	T	C	1.455e^-4	0.918	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2398590	3L_2398590_SNP [dm3] 3L_2398590_SNP [dm6]	T	A	1.464e^-4	0.918	INTRON CG45186
3L	1388941	3L_1388941_SNP [dm3] 3L_1388941_SNP [dm6]	C	A	1.468e^-4	0.918	INTRON Ptp61F
2R	3979055	2R_3979055_SNP [dm3] 2R_8091550_SNP [dm6]	T	G	1.469e^-4	0.918	UPSTREAM CG8713 DOWNSTREAM sut3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26713363	3R_26713363_SNP [dm3] 3R_30887641_SNP [dm6]	G	T	1.490e^-4	0.925	INTRON Sap-r
3L	7864830	3L_7864830_SNP [dm3] 3L_7871730_SNP [dm6]	G	A	1.502e^-4	0.925	INTRON CG32365
2R	8938737	2R_8938737_SNP [dm3] 2R_13051232_SNP [dm6]	T	A	1.508e^-4	0.925	INTERGENIC
3L	10507284	3L_10507284_SNP [dm3] 3L_10514184_SNP [dm6]	T	A	1.512e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8361416	X_8361416_SNP [dm3] X_8467383_SNP [dm6]	G	A	1.514e^-4	0.925	DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
3L	10709568	3L_10709568_SNP [dm3] 3L_10716468_SNP [dm6]	T	G	1.515e^-4	0.925	INTERGENIC
3R	17202123	3R_17202123_SNP [dm3] 3R_21376401_SNP [dm6]	T	C	1.516e^-4	0.925	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	11156096	3R_11156096_SNP [dm3] 3R_15330374_SNP [dm6]	A	C	1.520e^-4	0.925	UTR_3_PRIME ea UPSTREAM mRpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	26683234	3R_26683234_SNP [dm3] 3R_30857512_SNP [dm6]	A	G	1.533e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18529609	3R_18529609_SNP [dm3] 3R_22703887_SNP [dm6]	G	T	1.533e^-4	0.925	DOWNSTREAM CG13842 INTRON CG6972
2L	21822385	2L_21822385_SNP [dm3] 2L_21822385_SNP [dm6]	C	A	1.542e^-4	0.925	DOWNSTREAM CR44786 INTERGENIC
2L	2534712	2L_2534712_SNP [dm3] 2L_2534712_SNP [dm6]	C	G	1.550e^-4	0.925	INTERGENIC
3R	26713366	3R_26713366_SNP [dm3] 3R_30887644_SNP [dm6]	G	A	1.550e^-4	0.925	INTRON Sap-r
3L	11128132	3L_11128132_SNP [dm3] 3L_11135032_SNP [dm6]	G	A	1.550e^-4	0.925	SYNONYMOUS_CODING CG14143 DOWNSTREAM CG42575
3L	1646153	3L_1646153_SNP [dm3] 3L_1646153_SNP [dm6]	G	A	1.554e^-4	0.925	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1853498	3L_1853498_SNP [dm3] 3L_1853498_SNP [dm6]	G	A	1.564e^-4	0.928	INTRON CG13936
2R	16774017	2R_16774017_SNP [dm3] 2R_20886512_SNP [dm6]	T	G	1.574e^-4	0.928	INTRON otp
3L	2484411	3L_2484411_SNP [dm3] 3L_2484411_SNP [dm6]	G	A	1.577e^-4	0.928	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18216118	X_18216118_SNP [dm3] X_18322085_SNP [dm6]	C	G	1.587e^-4	0.928	UPSTREAM CG6023 DOWNSTREAM CG6123 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_inv
X	19773163	X_19773163_INS [dm3] X_19879130_INS [dm6]	A	AT	1.588e^-4	0.928	INTRON Hers	TF binding site BDTNP1_TFBS_da
2R	18396884	2R_18396884_DEL [dm3] 2R_22509379_DEL [dm6]	AGTCCTAAAGAAA...	A	1.589e^-4	0.928	INTRON px	TF binding site mE1_TFBS_cad
3L	12254157	3L_12254157_SNP [dm3] 3L_12261057_SNP [dm6]	G	A	1.598e^-4	0.929	INTRON app
3R	19266794	3R_19266794_SNP [dm3] 3R_23441072_SNP [dm6]	T	A	1.601e^-4	0.929	INTRON CG4374
2L	3595423	2L_3595423_INS [dm3] 2L_3595423_INS [dm6]	G	GG	1.609e^-4	0.931	INTERGENIC
3L	9487386	3L_9487386_SNP [dm3] 3L_9494286_SNP [dm6]	G	C	1.633e^-4	0.942	DOWNSTREAM path INTERGENIC
2R	5283255	2R_5283255_SNP [dm3] 2R_9395750_SNP [dm6]	T	C	1.637e^-4	0.942	SPLICE_SITE_REGION CG8800 DOWNSTREAM CG8801 & 1 other INTRON CG8800	TF binding site mE1_TFBS_cad
2R	18832346	2R_18832346_SNP [dm3] 2R_22944823_SNP [dm6]	G	A	1.642e^-4	0.942	NON_SYNONYMOUS_CODING CG42694	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15962715	2R_15962715_SNP [dm3] 2R_20075210_SNP [dm6]	G	C	1.673e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5442886	3L_5442886_SNP [dm3] 3L_5449786_SNP [dm6]	A	G	1.677e^-4	0.948	INTERGENIC
3R	26209092	3R_26209092_SNP [dm3] 3R_30383370_SNP [dm6]	T	A	1.678e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19773090	X_19773090_SNP [dm3] X_19879057_SNP [dm6]	A	G	1.679e^-4	0.948	INTRON Hers	TF binding site BDTNP1_TFBS_da
3L	912048	3L_912048_SNP [dm3] 3L_912048_SNP [dm6]	T	A	1.690e^-4	0.948	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
2L	4786286	2L_4786286_SNP [dm3] 2L_4786286_SNP [dm6]	A	G	1.692e^-4	0.948	INTRON CG15630
3R	11291149	3R_11291149_SNP [dm3] 3R_15465427_SNP [dm6]	C	A	1.693e^-4	0.948	INTRON AdamTS-A
3R	12646945	3R_12646945_SNP [dm3] 3R_16821223_SNP [dm6]	A	G	1.694e^-4	0.948	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	20759561	X_20759561_SNP [dm3] X_20888534_SNP [dm6]	T	G	1.702e^-4	0.948	INTRON shakB
3L	8076964	3L_8076964_SNP [dm3] 3L_8083864_SNP [dm6]	G	A	1.703e^-4	0.948	UPSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13955109	2R_13955109_SNP [dm3] 2R_18067604_SNP [dm6]	G	C	1.716e^-4	0.949	INTRON CG34386
X	18213998	X_18213998_SNP [dm3] X_18319965_SNP [dm6]	A	T	1.720e^-4	0.949	INTRON CG6023
X	18215809	X_18215809_INS [dm3] X_18321776_INS [dm6]	C	CAAAGTG	1.721e^-4	0.949	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2360155	3L_2360155_SNP [dm3] 3L_2360155_SNP [dm6]	A	T	1.741e^-4	0.953	UPSTREAM CG13801 INTERGENIC
2L	7152892	2L_7152892_SNP [dm3] 2L_7152892_SNP [dm6]	G	A	1.747e^-4	0.953	INTRON Pvf3
3L	7580207	3L_7580207_SNP [dm3] 3L_7587107_SNP [dm6]	C	G	1.760e^-4	0.953	SYNONYMOUS_CODING CG14838
2L	3508872	2L_3508872_SNP [dm3] 2L_3508872_SNP [dm6]	A	T	1.761e^-4	0.953	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2L	6450463	2L_6450463_SNP [dm3] 2L_6450463_SNP [dm6]	A	G	1.764e^-4	0.953	INTRON retm
3R	12646904	3R_12646904_INS [dm3] 3R_16821182_INS [dm6]	A	AA	1.790e^-4	0.953	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	19773131	X_19773131_SNP [dm3] X_19879098_SNP [dm6]	A	C	1.790e^-4	0.953	INTRON Hers	TF binding site BDTNP1_TFBS_da
3L	10507286	3L_10507286_SNP [dm3] 3L_10514186_SNP [dm6]	G	A	1.793e^-4	0.953	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17375360	2L_17375360_SNP [dm3] 2L_17375360_SNP [dm6]	A	C	1.794e^-4	0.953	INTRON Lrch	TF binding site BDTNP1_TFBS_da
2L	10810123	2L_10810123_SNP [dm3] 2L_10810123_SNP [dm6]	C	G	1.800e^-4	0.953	INTRON Nos
3R	17202113	3R_17202113_SNP [dm3] 3R_21376391_SNP [dm6]	A	T	1.803e^-4	0.953	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	5722366	3R_5722366_SNP [dm3] 3R_9896644_SNP [dm6]	A	T	1.804e^-4	0.953	INTRON Glut4EF
2L	12198741	2L_12198741_INS [dm3] 2L_12198741_INS [dm6]	G	GA	1.806e^-4	0.953	INTRON aret
2R	12439286	2R_12439286_INS [dm3] 2R_16551781_INS [dm6]	A	CG	1.808e^-4	0.953	UPSTREAM Syn2 INTERGENIC
3R	2186830	3R_2186830_SNP [dm3] 3R_6361108_SNP [dm6]	C	T	1.815e^-4	0.953	UTR_3_PRIME Pak DOWNSTREAM Pak & 1 other
3L	10737044	3L_10737044_SNP [dm3] 3L_10743944_SNP [dm6]	T	C	1.815e^-4	0.953	INTERGENIC
X	3124150	X_3124150_SNP [dm3] X_3230117_SNP [dm6]	G	T	1.821e^-4	0.953	INTRON dnc
2L	6742650	2L_6742650_SNP [dm3] 2L_6742650_SNP [dm6]	C	T	1.828e^-4	0.953	UTR_5_PRIME CG11221
2R	12341822	2R_12341822_SNP [dm3] 2R_16454317_SNP [dm6]	C	T	1.830e^-4	0.953	INTERGENIC
X	8403131	X_8403131_SNP [dm3] X_8509098_SNP [dm6]	A	C	1.831e^-4	0.953	UPSTREAM CG33181 INTRON CG33181
3R	19262866	3R_19262866_SNP [dm3] 3R_23437144_SNP [dm6]	G	A	1.835e^-4	0.953	INTRON CG4374
3L	16461729	3L_16461729_SNP [dm3] 3L_16468629_SNP [dm6]	G	C	1.840e^-4	0.953	INTRON CG33158	TF binding site mE1_TFBS_inv
3L	1299070	3L_1299070_SNP [dm3] 3L_1299070_SNP [dm6]	A	G	1.853e^-4	0.957	SYNONYMOUS_CODING scf UTR_5_PRIME scf DOWNSTREAM Rabex-5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19266793	3R_19266793_SNP [dm3] 3R_23441071_SNP [dm6]	G	A	1.866e^-4	0.958	INTRON CG4374
X	14463664	X_14463664_SNP [dm3] X_14569631_SNP [dm6]	C	T	1.870e^-4	0.958	INTERGENIC
3L	7844526	3L_7844526_SNP [dm3] 3L_7851426_SNP [dm6]	G	A	1.871e^-4	0.958	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	12198743	2L_12198743_SNP [dm3] 2L_12198743_SNP [dm6]	A	T	1.876e^-4	0.958	INTRON aret
2L	12089860	2L_12089860_SNP [dm3] 2L_12089860_SNP [dm6]	C	A	1.882e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11181785	3L_11181785_SNP [dm3] 3L_11188685_SNP [dm6]	A	G	1.886e^-4	0.958	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	1.896e^-4	0.958	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11108930	3L_11108930_SNP [dm3] 3L_11115830_SNP [dm6]	G	A	1.905e^-4	0.958	INTRON fd68A
3L	1344103	3L_1344103_SNP [dm3] 3L_1344103_SNP [dm6]	A	G	1.908e^-4	0.958	UTR_3_PRIME Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14699066	3R_14699066_SNP [dm3] 3R_18873344_SNP [dm6]	G	T	1.920e^-4	0.958	INTERGENIC
3L	1745046	3L_1745046_SNP [dm3] 3L_1745046_SNP [dm6]	A	C	1.926e^-4	0.958	UTR_3_PRIME Gk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14299333	2L_14299333_SNP [dm3] 2L_14299333_SNP [dm6]	G	A	1.930e^-4	0.958	INTRON wb
X	8948284	X_8948284_SNP [dm3] X_9054251_SNP [dm6]	C	G	1.931e^-4	0.958	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3R	14113304	3R_14113304_SNP [dm3] 3R_18287582_SNP [dm6]	T	C	1.934e^-4	0.958	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7618919	2R_7618919_SNP [dm3] 2R_11731414_SNP [dm6]	G	T	1.934e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7864333	3L_7864333_SNP [dm3] 3L_7871233_SNP [dm6]	T	C	1.952e^-4	0.958	INTRON CG32365
3R	26712308	3R_26712308_SNP [dm3] 3R_30886586_SNP [dm6]	G	T	1.959e^-4	0.958	INTRON Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13364229	2R_13364229_SNP [dm3] 2R_17476724_SNP [dm6]	T	A	1.963e^-4	0.958	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17188463	3R_17188463_SNP [dm3] 3R_21362741_SNP [dm6]	C	T	1.965e^-4	0.958	SYNONYMOUS_CODING mod_mdg4_ DOWNSTREAM mod_mdg4_ & 5 others INTRON mod_mdg4_
3R	19118687	3R_19118687_SNP [dm3] 3R_23292965_SNP [dm6]	G	A	1.971e^-4	0.958	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26697070	3R_26697070_SNP [dm3] 3R_30871348_SNP [dm6]	C	A	1.974e^-4	0.958	NON_SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14109883	3L_14109883_SNP [dm3] 3L_14116783_SNP [dm6]	C	T	1.975e^-4	0.958	INTRON Sox21b
2L	1303886	2L_1303886_SNP [dm3] 2L_1303886_SNP [dm6]	C	A	1.982e^-4	0.958	INTERGENIC
X	7882907	X_7882907_SNP [dm3] X_7988874_SNP [dm6]	G	A	1.983e^-4	0.958	INTERGENIC
3L	7865394	3L_7865394_SNP [dm3] 3L_7872294_SNP [dm6]	T	C	1.991e^-4	0.958	INTRON CG32365
3R	14113269	3R_14113269_SNP [dm3] 3R_18287547_SNP [dm6]	A	G	1.995e^-4	0.958	SPLICE_SITE_REGION CG7131 DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10676529	2L_10676529_SNP [dm3] 2L_10676529_SNP [dm6]	A	T	2.004e^-4	0.958	UPSTREAM CG17104 INTERGENIC
3R	27300122	3R_27300122_SNP [dm3] 3R_31474400_SNP [dm6]	A	T	2.010e^-4	0.958	DOWNSTREAM CR45555 INTERGENIC
3L	12250084	3L_12250084_SNP [dm3] 3L_12256984_SNP [dm6]	A	C	2.011e^-4	0.958	INTRON app
3R	2358866	3R_2358866_SNP [dm3] 3R_6533144_SNP [dm6]	G	A	2.018e^-4	0.958	INTRON dpr11
3L	5613168	3L_5613168_SNP [dm3] 3L_5620068_SNP [dm6]	G	A	2.027e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	18193209	2R_18193209_SNP [dm3] 2R_22305704_SNP [dm6]	C	T	2.029e^-4	0.958	INTRON wdp
3R	17203054	3R_17203054_SNP [dm3] 3R_21377332_SNP [dm6]	G	C	2.032e^-4	0.958	START_GAINED mod_mdg4_ UTR_5_PRIME mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1578517	2L_1578517_SNP [dm3] 2L_1578517_SNP [dm6]	A	C	2.051e^-4	0.958	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13496964	2L_13496964_DEL [dm3] 2L_13496964_DEL [dm6]	ACCTTTA	A	2.052e^-4	0.958	INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	2.052e^-4	0.958	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15692348	3L_15692348_SNP [dm3] 3L_15699248_SNP [dm6]	G	T	2.059e^-4	0.958	SYNONYMOUS_CODING comm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	8403358	X_8403358_SNP [dm3] X_8509325_SNP [dm6]	A	T	2.066e^-4	0.958	UPSTREAM CG33181 INTRON CG33181
3L	12562813	3L_12562813_SNP [dm3] 3L_12569713_SNP [dm6]	C	T	2.082e^-4	0.958	INTRON sowah	TF binding site BDTNP1_TFBS_twi
X	10202409	X_10202409_SNP [dm3] X_10308376_SNP [dm6]	C	T	2.093e^-4	0.958	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_run
2R	10033886	2R_10033886_SNP [dm3] 2R_14146381_SNP [dm6]	T	G	2.111e^-4	0.958	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	18321533	3R_18321533_SNP [dm3] 3R_22495811_SNP [dm6]	A	G	2.113e^-4	0.958	INTERGENIC
2R	3045966	2R_3045966_SNP [dm3] 2R_7158461_SNP [dm6]	A	T	2.116e^-4	0.958	UPSTREAM nec INTRON pk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19871297	X_19871297_SNP [dm3] X_19977264_SNP [dm6]	A	G	2.128e^-4	0.958	INTERGENIC
2R	17600832	2R_17600832_SNP [dm3] 2R_21713327_SNP [dm6]	T	C	2.131e^-4	0.958	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	17185020	3R_17185020_SNP [dm3] 3R_21359298_SNP [dm6]	C	T	2.136e^-4	0.958	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	900190	2L_900190_SNP [dm3] 2L_900190_SNP [dm6]	A	C	2.151e^-4	0.958	NON_SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9357062	2L_9357062_SNP [dm3] 2L_9357062_SNP [dm6]	T	A	2.153e^-4	0.958	INTERGENIC
3R	14179849	3R_14179849_SNP [dm3] 3R_18354127_SNP [dm6]	T	C	2.168e^-4	0.958	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	4441348	2R_4441348_SNP [dm3] 2R_8553843_SNP [dm6]	G	A	2.170e^-4	0.958	INTERGENIC
2R	9244577	2R_9244577_SNP [dm3] 2R_13357072_SNP [dm6]	C	T	2.183e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12504308	3L_12504308_SNP [dm3] 3L_12511208_SNP [dm6]	A	C	2.189e^-4	0.958	NON_SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5443113	3L_5443113_SNP [dm3] 3L_5450013_SNP [dm6]	G	A	2.195e^-4	0.958	INTERGENIC
2R	14992632	2R_14992632_INS [dm3] 2R_19105127_INS [dm6]	A	AT	2.197e^-4	0.958	INTRON 5-HT1A
3L	11181774	3L_11181774_SNP [dm3] 3L_11188674_SNP [dm6]	G	A	2.199e^-4	0.958	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	3956695	2L_3956695_SNP [dm3] 2L_3956695_SNP [dm6]	T	C	2.206e^-4	0.958	INTRON fred
X	730364	X_730364_SNP [dm3] X_836331_SNP [dm6]	T	G	2.212e^-4	0.958	UTR_5_PRIME CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12553705	3L_12553705_SNP [dm3] 3L_12560605_SNP [dm6]	T	C	2.212e^-4	0.958	INTRON sowah
3L	1016773	3L_1016773_SNP [dm3] 3L_1016773_SNP [dm6]	T	G	2.215e^-4	0.958	INTRON trio
3R	17202878	3R_17202878_SNP [dm3] 3R_21377156_SNP [dm6]	G	A	2.219e^-4	0.958	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12190056	X_12190056_SNP [dm3] X_12296023_SNP [dm6]	G	A	2.231e^-4	0.958	INTRON Ten-a
2R	11787624	2R_11787624_SNP [dm3] 2R_15900119_SNP [dm6]	G	C	2.259e^-4	0.958	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9799968	2L_9799968_SNP [dm3] 2L_9799968_SNP [dm6]	C	A	2.264e^-4	0.958	INTRON nAChRalpha6
3L	1646612	3L_1646612_SNP [dm3] 3L_1646612_SNP [dm6]	T	C	2.283e^-4	0.958	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25368802	3R_25368802_SNP [dm3] 3R_29543080_SNP [dm6]	A	C	2.287e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11233537	3L_11233537_SNP [dm3] 3L_11240437_SNP [dm6]	T	C	2.288e^-4	0.958	INTERGENIC
3L	5745387	3L_5745387_DEL [dm3] 3L_5752287_DEL [dm6]	TAAACAC	T	2.290e^-4	0.958	UPSTREAM Ubp64E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3R	9299107	3R_9299107_SNP [dm3] 3R_13473385_SNP [dm6]	G	T	2.291e^-4	0.958	INTERGENIC
3L	2856276	3L_2856276_SNP [dm3] 3L_2856276_SNP [dm6]	C	G	2.292e^-4	0.958	INTRON CG43444
3R	17213701	3R_17213701_SNP [dm3] 3R_21387979_SNP [dm6]	G	T	2.298e^-4	0.958	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9357009	2L_9357009_SNP [dm3] 2L_9357009_SNP [dm6]	T	A	2.299e^-4	0.958	INTERGENIC
3L	2856283	3L_2856283_SNP [dm3] 3L_2856283_SNP [dm6]	G	A	2.300e^-4	0.958	INTRON CG43444
3R	24600633	3R_24600633_SNP [dm3] 3R_28774911_SNP [dm6]	C	T	2.311e^-4	0.958	INTERGENIC
2L	9250844	2L_9250844_SNP [dm3] 2L_9250844_SNP [dm6]	G	A	2.314e^-4	0.958	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7017394	2L_7017394_SNP [dm3] 2L_7017394_SNP [dm6]	G	A	2.315e^-4	0.958	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17203073	3R_17203073_SNP [dm3] 3R_21377351_SNP [dm6]	C	T	2.341e^-4	0.958	UTR_5_PRIME mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	20880894	X_20880894_SNP [dm3] X_21009867_SNP [dm6]	A	C	2.343e^-4	0.958	INTERGENIC
3L	12252569	3L_12252569_SNP [dm3] 3L_12259469_SNP [dm6]	C	G	2.344e^-4	0.958	INTRON app
2R	3112682	2R_3112682_SNP [dm3] 2R_7225177_SNP [dm6]	T	C	2.360e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8520951	3R_8520951_SNP [dm3] 3R_12695229_SNP [dm6]	A	C	2.373e^-4	0.958	UTR_5_PRIME NijC UPSTREAM CG14391 & 1 other DOWNSTREAM Arp1
3L	6440881	3L_6440881_SNP [dm3] 3L_6447781_SNP [dm6]	A	C	2.382e^-4	0.958	INTRON CG42747
3R	14871319	3R_14871319_SNP [dm3] 3R_19045597_SNP [dm6]	G	A	2.386e^-4	0.958	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other
3L	4697361	3L_4697361_SNP [dm3] 3L_4697361_SNP [dm6]	C	T	2.395e^-4	0.958	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14143900	3R_14143900_SNP [dm3] 3R_18318178_SNP [dm6]	G	A	2.396e^-4	0.958	INTRON CG31235
3R	14146517	3R_14146517_SNP [dm3] 3R_18320795_SNP [dm6]	T	A	2.400e^-4	0.958	INTRON CG31235
3R	20432422	3R_20432422_SNP [dm3] 3R_24606700_SNP [dm6]	C	T	2.405e^-4	0.958	INTRON mld
3L	11057149	3L_11057149_SNP [dm3] 3L_11064049_SNP [dm6]	A	G	2.407e^-4	0.958	SYNONYMOUS_CODING CG32075 UPSTREAM SuUR & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19871292	X_19871292_SNP [dm3] X_19977259_SNP [dm6]	C	T	2.408e^-4	0.958	INTERGENIC
2L	10786562	2L_10786562_SNP [dm3] 2L_10786562_SNP [dm6]	T	A	2.410e^-4	0.958	UPSTREAM CR44582 INTRON CG31869
2L	12089849	2L_12089849_SNP [dm3] 2L_12089849_SNP [dm6]	C	G	2.418e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2065313	2L_2065313_SNP [dm3] 2L_2065313_SNP [dm6]	C	T	2.419e^-4	0.958	INTRON dpr3
X	18212648	X_18212648_SNP [dm3] X_18318615_SNP [dm6]	T	C	2.421e^-4	0.958	INTRON CG6023
3R	17211103	3R_17211103_SNP [dm3] 3R_21385381_SNP [dm6]	C	A	2.428e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs
2R	17863431	2R_17863431_SNP [dm3] 2R_21975926_SNP [dm6]	A	G	2.435e^-4	0.958	UTR_3_PRIME CG9304 UPSTREAM Gr58c
2R	3164101	2R_3164101_SNP [dm3] 2R_7276596_SNP [dm6]	G	A	2.435e^-4	0.958	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10033882	2R_10033882_SNP [dm3] 2R_14146377_SNP [dm6]	T	C	2.440e^-4	0.958	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16412287	2L_16412287_INS [dm3] 2L_16412287_INS [dm6]	AA	CTC	2.447e^-4	0.958	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2746657	3L_2746657_SNP [dm3] 3L_2746657_SNP [dm6]	T	A	2.456e^-4	0.958	INTRON Mrtf	TF binding site mE1_TFBS_HSA
X	10211745	X_10211745_SNP [dm3] X_10317712_SNP [dm6]	C	T	2.461e^-4	0.958	INTRON alpha-Man-I
3R	13928357	3R_13928357_SNP [dm3] 3R_18102635_SNP [dm6]	T	A	2.461e^-4	0.958	INTRON sr
3R	17213712	3R_17213712_DEL [dm3] 3R_21387990_DEL [dm6]	TT	T	2.469e^-4	0.958	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17211691	3R_17211691_SNP [dm3] 3R_21385969_SNP [dm6]	C	T	2.470e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	765807	2L_765807_SNP [dm3] 2L_765807_SNP [dm6]	T	C	2.478e^-4	0.958	INTERGENIC
X	15312345	X_15312345_SNP [dm3] X_15418312_SNP [dm6]	T	C	2.479e^-4	0.958	INTRON Cngl
X	15467078	X_15467078_SNP [dm3] X_15573045_SNP [dm6]	A	G	2.484e^-4	0.958	NON_SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17208650	3R_17208650_SNP [dm3] 3R_21382928_SNP [dm6]	C	T	2.484e^-4	0.958	DOWNSTREAM tin INTERGENIC	regulatory region REDfly_CRMs
2L	8877456	2L_8877456_SNP [dm3] 2L_8877456_SNP [dm6]	A	T	2.493e^-4	0.958	INTERGENIC
3R	8716207	3R_8716207_SNP [dm3] 3R_12890485_SNP [dm6]	T	A	2.501e^-4	0.958	INTERGENIC
3L	11106013	3L_11106013_SNP [dm3] 3L_11112913_SNP [dm6]	C	A	2.501e^-4	0.958	DOWNSTREAM CG7638 INTRON Sod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16339274	2R_16339274_SNP [dm3] 2R_20451769_SNP [dm6]	A	G	2.502e^-4	0.958	INTRON CG12484
3L	7279415	3L_7279415_SNP [dm3] 3L_7286315_SNP [dm6]	T	C	2.508e^-4	0.958	INTRON unc-13-4A
3L	1911782	3L_1911782_SNP [dm3] 3L_1911782_SNP [dm6]	G	A	2.514e^-4	0.958	INTERGENIC
3R	26682776	3R_26682776_SNP [dm3] 3R_30857054_SNP [dm6]	G	A	2.517e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18374906	2R_18374906_SNP [dm3] 2R_22487401_SNP [dm6]	T	C	2.518e^-4	0.958	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
3R	7155399	3R_7155399_DEL [dm3] 3R_11329677_DEL [dm6]	AA	A	2.524e^-4	0.958	UTR_5_PRIME pros
2R	17863187	2R_17863187_SNP [dm3] 2R_21975682_SNP [dm6]	C	A	2.528e^-4	0.958	UTR_3_PRIME CG9304 UPSTREAM Gr58c
2R	17863200	2R_17863200_DEL [dm3] 2R_21975695_DEL [dm6]	TGAAGTATTTGCTTAGCTAT...	T	2.528e^-4	0.958	UTR_3_PRIME CG9304 UPSTREAM Gr58c
X	5471229	X_5471229_SNP [dm3] X_5577196_SNP [dm6]	C	T	2.533e^-4	0.958	INTERGENIC
3R	14179804	3R_14179804_SNP [dm3] 3R_18354082_SNP [dm6]	G	T	2.536e^-4	0.958	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	15699871	3R_15699871_SNP [dm3] 3R_19874149_SNP [dm6]	A	G	2.543e^-4	0.958	INTRON CG4562
3L	12657340	3L_12657340_SNP [dm3] 3L_12664240_SNP [dm6]	C	A	2.551e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4207105	3L_4207105_INS [dm3] 3L_4207105_INS [dm6]	A	AA	2.553e^-4	0.958	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	14394897	3R_14394897_SNP [dm3] 3R_18569175_SNP [dm6]	A	T	2.555e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	20952618	2L_20952618_SNP [dm3] 2L_20952618_SNP [dm6]	T	G	2.556e^-4	0.958	INTERGENIC
2R	10694767	2R_10694767_SNP [dm3] 2R_14807262_SNP [dm6]	G	A	2.556e^-4	0.958	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
3R	5419425	3R_5419425_SNP [dm3] 3R_9593703_SNP [dm6]	C	T	2.558e^-4	0.958	INTRON CG8312	TF binding site BDTNP1_TFBS_dl
3L	2398344	3L_2398344_SNP [dm3] 3L_2398344_SNP [dm6]	A	T	2.558e^-4	0.958	INTRON CG45186	TF binding site mE1_TFBS_inv
X	5238233	X_5238233_SNP [dm3] X_5344200_SNP [dm6]	A	C	2.565e^-4	0.958	INTRON SK
2R	12189810	2R_12189810_SNP [dm3] 2R_16302305_SNP [dm6]	C	T	2.574e^-4	0.958	EXON CR45232	TF binding site BDTNP1_TFBS_dl
3L	8324899	3L_8324899_SNP [dm3] 3L_8331799_SNP [dm6]	T	G	2.581e^-4	0.958	INTERGENIC
3L	7778575	3L_7778575_SNP [dm3] 3L_7785475_SNP [dm6]	A	G	2.587e^-4	0.958	INTRON CG32369
3L	6025676	3L_6025676_SNP [dm3] 3L_6032576_SNP [dm6]	G	A	2.597e^-4	0.958	DOWNSTREAM CG10477 INTERGENIC
2R	3532195	2R_3532195_SNP [dm3] 2R_7644690_SNP [dm6]	G	C	2.598e^-4	0.958	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	5546380	3L_5546380_SNP [dm3] 3L_5553280_SNP [dm6]	A	T	2.600e^-4	0.958	INTERGENIC
X	18500730	X_18500730_SNP [dm3] X_18606697_SNP [dm6]	T	C	2.615e^-4	0.958	UTR_3_PRIME CG15040	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9442274	2R_9442274_SNP [dm3] 2R_13554769_SNP [dm6]	T	A	2.622e^-4	0.958	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	1647105	3L_1647105_SNP [dm3] 3L_1647105_SNP [dm6]	T	A	2.623e^-4	0.958	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3712139	2R_3712139_DEL [dm3] 2R_7824634_DEL [dm6]	ATTTATGCATGTACATA...	A	2.627e^-4	0.958	UPSTREAM phr INTRON CG30383	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_ttk
2R	3593642	2R_3593642_SNP [dm3] 2R_7706137_SNP [dm6]	C	T	2.632e^-4	0.958	INTRON tor
3L	10402991	3L_10402991_SNP [dm3] 3L_10409891_SNP [dm6]	T	A	2.637e^-4	0.958	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10403025	3L_10403025_SNP [dm3] 3L_10409925_SNP [dm6]	C	A	2.637e^-4	0.958	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12256207	3L_12256207_SNP [dm3] 3L_12263107_SNP [dm6]	C	A	2.638e^-4	0.958	INTRON app
3R	12646932	3R_12646932_SNP [dm3] 3R_16821210_SNP [dm6]	G	A	2.639e^-4	0.958	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26369789	3R_26369789_SNP [dm3] 3R_30544067_SNP [dm6]	A	G	2.647e^-4	0.958	INTRON tmod
3L	16461732	3L_16461732_SNP [dm3] 3L_16468632_SNP [dm6]	A	T	2.650e^-4	0.958	INTRON CG33158	TF binding site mE1_TFBS_inv
2L	2739312	2L_2739312_DEL [dm3] 2L_2739312_DEL [dm6]	AAGCA	G	2.655e^-4	0.958	UPSTREAM Hrs INTRON CG31689
2L	1610586	2L_1610586_SNP [dm3] 2L_1610586_SNP [dm6]	C	A	2.656e^-4	0.958	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	9301644	3R_9301644_SNP [dm3] 3R_13475922_SNP [dm6]	T	C	2.667e^-4	0.958	INTERGENIC
2R	17808823	2R_17808823_SNP [dm3] 2R_21921318_SNP [dm6]	G	A	2.670e^-4	0.958	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19155700	3R_19155700_SNP [dm3] 3R_23329978_SNP [dm6]	C	A	2.683e^-4	0.958	INTRON pnt
3R	9111318	3R_9111318_SNP [dm3] 3R_13285596_SNP [dm6]	T	C	2.685e^-4	0.958	INTRON CG15888
3R	26673115	3R_26673115_SNP [dm3] 3R_30847393_SNP [dm6]	C	A	2.693e^-4	0.958	INTERGENIC
3R	23183412	3R_23183412_SNP [dm3] 3R_27357690_SNP [dm6]	A	T	2.696e^-4	0.958	INTRON CG42534
2L	9357035	2L_9357035_SNP [dm3] 2L_9357035_SNP [dm6]	T	A	2.697e^-4	0.958	INTERGENIC
2R	13578743	2R_13578743_SNP [dm3] 2R_17691238_SNP [dm6]	G	A	2.701e^-4	0.958	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad
X	5714629	X_5714629_SNP [dm3] X_5820596_SNP [dm6]	G	C	2.702e^-4	0.958	INTRON CG15765
3R	24032943	3R_24032943_SNP [dm3] 3R_28207221_SNP [dm6]	A	G	2.702e^-4	0.958	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	17925055	3L_17925055_DEL [dm3] 3L_17931955_DEL [dm6]	TGA	T	2.704e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8513037	3R_8513037_SNP [dm3] 3R_12687315_SNP [dm6]	C	G	2.708e^-4	0.958	INTRON kar
3L	12552994	3L_12552994_SNP [dm3] 3L_12559894_SNP [dm6]	C	T	2.729e^-4	0.958	INTRON sowah
3R	15429898	3R_15429898_SNP [dm3] 3R_19604176_SNP [dm6]	T	C	2.736e^-4	0.958	SYNONYMOUS_CODING CG7342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26575549	3R_26575549_SNP [dm3] 3R_30749827_SNP [dm6]	A	C	2.738e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13421625	3R_13421625_SNP [dm3] 3R_17595903_SNP [dm6]	A	G	2.739e^-4	0.958	SPLICE_SITE_REGION Sgs5 SYNONYMOUS_CODING Sgs5 UPSTREAM CG7606 DOWNSTREAM CG7587
3R	14806799	3R_14806799_SNP [dm3] 3R_18981077_SNP [dm6]	G	A	2.741e^-4	0.958	UTR_5_PRIME Smu1 & 1 other UPSTREAM dnk & 1 other INTRON Smu1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	5725755	3R_5725755_SNP [dm3] 3R_9900033_SNP [dm6]	T	A	2.748e^-4	0.958	INTRON Glut4EF
3L	10065214	3L_10065214_INS [dm3] 3L_10072114_INS [dm6]	T	TATGT	2.750e^-4	0.958	DOWNSTREAM dpr6 INTRON dpr6
2L	9800004	2L_9800004_SNP [dm3] 2L_9800004_SNP [dm6]	G	A	2.759e^-4	0.958	INTRON nAChRalpha6
3L	5546350	3L_5546350_INS [dm3] 3L_5553250_INS [dm6]	T	TT	2.761e^-4	0.958	INTERGENIC
2L	5290001	2L_5290001_SNP [dm3] 2L_5290001_SNP [dm6]	C	T	2.761e^-4	0.958	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	21144250	3L_21144250_SNP [dm3] 3L_21151150_SNP [dm6]	G	T	2.762e^-4	0.958	UPSTREAM Ac78C INTRON Ac78C
3R	10290301	3R_10290301_SNP [dm3] 3R_14464579_SNP [dm6]	A	G	2.773e^-4	0.958	INTRON cv-c
3R	21070005	3R_21070005_SNP [dm3] 3R_25244283_SNP [dm6]	A	G	2.786e^-4	0.958	SYNONYMOUS_CODING bam
3L	834230	3L_834230_SNP [dm3] 3L_834230_SNP [dm6]	A	G	2.787e^-4	0.958	SYNONYMOUS_CODING CG42553 UPSTREAM CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21150820	X_21150820_SNP [dm3] X_21279793_SNP [dm6]	A	G	2.787e^-4	0.958	INTRON CG32521
2L	13241090	2L_13241090_SNP [dm3] 2L_13241090_SNP [dm6]	T	C	2.789e^-4	0.958	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11108332	3L_11108332_SNP [dm3] 3L_11115232_SNP [dm6]	C	T	2.790e^-4	0.958	SYNONYMOUS_CODING fd68A
2L	9357027	2L_9357027_SNP [dm3] 2L_9357027_SNP [dm6]	A	G	2.804e^-4	0.958	INTERGENIC
X	740082	X_740082_SNP [dm3] X_846049_SNP [dm6]	G	T	2.812e^-4	0.958	DOWNSTREAM CG3713 & 1 other INTRON CG43867
3L	2360593	3L_2360593_SNP [dm3] 3L_2360593_SNP [dm6]	C	T	2.815e^-4	0.958	SYNONYMOUS_CODING CG13801
3L	1008035	3L_1008035_SNP [dm3] 3L_1008035_SNP [dm6]	A	T	2.822e^-4	0.958	UPSTREAM trio INTRON trio	TF binding site mE1_TFBS_inv
3L	12141432	3L_12141432_SNP [dm3] 3L_12148332_SNP [dm6]	T	G	2.825e^-4	0.958	UPSTREAM eap INTRON Nrx-IV
3R	2186833	3R_2186833_SNP [dm3] 3R_6361111_SNP [dm6]	A	G	2.829e^-4	0.958	UTR_3_PRIME Pak DOWNSTREAM Pak & 1 other
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	2.842e^-4	0.958	INTRON Glut4EF
3L	14960014	3L_14960014_SNP [dm3] 3L_14966914_SNP [dm6]	C	A	2.863e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9305310	3L_9305310_DEL [dm3] 3L_9312210_DEL [dm6]	AA	A	2.867e^-4	0.958	INTERGENIC
3R	26705003	3R_26705003_SNP [dm3] 3R_30879281_SNP [dm6]	A	G	2.869e^-4	0.958	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12189422	X_12189422_SNP [dm3] X_12295389_SNP [dm6]	C	A	2.875e^-4	0.958	INTRON Ten-a
3L	21335173	3L_21335173_SNP [dm3] 3L_21342073_SNP [dm6]	A	G	2.878e^-4	0.958	SYNONYMOUS_CODING CG7324
2R	6795946	2R_6795946_SNP [dm3] 2R_10908441_SNP [dm6]	G	C	2.884e^-4	0.958	INTERGENIC
2R	18574130	2R_18574130_SNP [dm3] 2R_22686625_SNP [dm6]	T	G	2.901e^-4	0.958	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	26686990	3R_26686990_SNP [dm3] 3R_30861268_SNP [dm6]	G	A	2.905e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18212689	X_18212689_SNP [dm3] X_18318656_SNP [dm6]	C	G	2.915e^-4	0.958	INTRON CG6023
3R	8510207	3R_8510207_SNP [dm3] 3R_12684485_SNP [dm6]	G	C	2.925e^-4	0.958	SYNONYMOUS_CODING kar	TF binding site mE1_TFBS_cad
3R	12646964	3R_12646964_SNP [dm3] 3R_16821242_SNP [dm6]	A	G	2.926e^-4	0.958	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22693817	3R_22693817_SNP [dm3] 3R_26868095_SNP [dm6]	T	A	2.946e^-4	0.958	INTRON His2Av	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D
X	10210715	X_10210715_SNP [dm3] X_10316682_SNP [dm6]	G	A	2.951e^-4	0.958	INTRON alpha-Man-I
2L	1610367	2L_1610367_SNP [dm3] 2L_1610367_SNP [dm6]	A	C	2.956e^-4	0.958	SYNONYMOUS_CODING CG31935	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	13307821	X_13307821_SNP [dm3] X_13413788_SNP [dm6]	G	T	2.958e^-4	0.958	NON_SYNONYMOUS_CODING Set2 UPSTREAM CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5280751	3L_5280751_SNP [dm3] 3L_5287651_SNP [dm6]	A	T	2.962e^-4	0.958	INTERGENIC
2R	16528386	2R_16528386_SNP [dm3] 2R_20640881_SNP [dm6]	G	A	2.963e^-4	0.958	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	9852854	2L_9852854_SNP [dm3] 2L_9852854_SNP [dm6]	G	C	2.963e^-4	0.958	INTRON nAChRalpha6
3R	8586358	3R_8586358_SNP [dm3] 3R_12760636_SNP [dm6]	G	A	2.975e^-4	0.958	INTRON beat-Vc
2L	1610754	2L_1610754_SNP [dm3] 2L_1610754_SNP [dm6]	G	C	2.978e^-4	0.958	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16190646	3L_16190646_SNP [dm3] 3L_16197546_SNP [dm6]	T	G	3.006e^-4	0.958	UPSTREAM CG33687 & 1 other INTERGENIC
3L	11105359	3L_11105359_SNP [dm3] 3L_11112259_SNP [dm6]	A	G	3.006e^-4	0.958	DOWNSTREAM Sod & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	4036949	2L_4036949_SNP [dm3] 2L_4036949_SNP [dm6]	G	T	3.007e^-4	0.958	INTRON ed
3R	13604871	3R_13604871_SNP [dm3] 3R_17779149_SNP [dm6]	G	C	3.021e^-4	0.958	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3L	10826562	3L_10826562_SNP [dm3] 3L_10833462_SNP [dm6]	A	T	3.024e^-4	0.958	INTERGENIC
3L	10862713	3L_10862713_SNP [dm3] 3L_10869613_SNP [dm6]	A	T	3.026e^-4	0.958	UPSTREAM tna INTRON tna
3L	7564127	3L_7564127_SNP [dm3] 3L_7571027_SNP [dm6]	G	A	3.030e^-4	0.958	INTERGENIC
3L	2485986	3L_2485986_SNP [dm3] 3L_2485986_SNP [dm6]	G	A	3.042e^-4	0.958	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	12646910	3R_12646910_SNP [dm3] 3R_16821188_SNP [dm6]	G	A	3.044e^-4	0.958	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646938	3R_12646938_SNP [dm3] 3R_16821216_SNP [dm6]	C	G	3.044e^-4	0.958	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17972897	3R_17972897_SNP [dm3] 3R_22147175_SNP [dm6]	T	G	3.049e^-4	0.958	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	3699675	2R_3699675_SNP [dm3] 2R_7812170_SNP [dm6]	C	G	3.052e^-4	0.958	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	17333915	X_17333915_SNP [dm3] X_17439882_SNP [dm6]	C	A	3.054e^-4	0.958	INTRON CG12994
3R	17195981	3R_17195981_SNP [dm3] 3R_21370259_SNP [dm6]	G	A	3.055e^-4	0.958	UTR_3_PRIME mod_mdg4_ DOWNSTREAM pre-mod_mdg4_-X & 3 others INTRON mod_mdg4_
3R	17195988	3R_17195988_DEL [dm3] 3R_21370266_DEL [dm6]	AACTT	A	3.055e^-4	0.958	UTR_3_PRIME mod_mdg4_ DOWNSTREAM pre-mod_mdg4_-X & 3 others INTRON mod_mdg4_
2L	8649472	2L_8649472_SNP [dm3] 2L_8649472_SNP [dm6]	G	A	3.056e^-4	0.958	INTRON Sema-1a
3L	8076730	3L_8076730_SNP [dm3] 3L_8083630_SNP [dm6]	G	A	3.056e^-4	0.958	UPSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	10324875	2R_10324875_SNP [dm3] 2R_14437370_SNP [dm6]	A	G	3.058e^-4	0.958	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11303929	3R_11303929_SNP [dm3] 3R_15478207_SNP [dm6]	C	G	3.060e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18237002	3R_18237002_SNP [dm3] 3R_22411280_SNP [dm6]	G	C	3.067e^-4	0.958	UPSTREAM lqfR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	2738635	2L_2738635_SNP [dm3] 2L_2738635_SNP [dm6]	T	C	3.067e^-4	0.958	DOWNSTREAM mir-4914 INTRON CG31689
2R	14941177	2R_14941177_SNP [dm3] 2R_19053672_SNP [dm6]	G	A	3.069e^-4	0.958	INTERGENIC
2R	15525687	2R_15525687_SNP [dm3] 2R_19638182_SNP [dm6]	T	C	3.070e^-4	0.958	DOWNSTREAM CG18367 & 2 others INTERGENIC
3L	913617	3L_913617_SNP [dm3] 3L_913617_SNP [dm6]	C	T	3.070e^-4	0.958	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20571454	3R_20571454_SNP [dm3] 3R_24745732_SNP [dm6]	C	G	3.085e^-4	0.958	INTRON tok	TF binding site mE1_TFBS_chinmo
2L	4043327	2L_4043327_SNP [dm3] 2L_4043327_SNP [dm6]	C	T	3.086e^-4	0.958	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8658953	3R_8658953_SNP [dm3] 3R_12833231_SNP [dm6]	T	C	3.086e^-4	0.958	INTERGENIC
3R	20240719	3R_20240719_SNP [dm3] 3R_24414997_SNP [dm6]	G	A	3.091e^-4	0.958	INTRON nAChRalpha1
2L	5522490	2L_5522490_SNP [dm3] 2L_5522490_SNP [dm6]	A	C	3.102e^-4	0.958	INTRON CG7371
2R	13204078	2R_13204078_SNP [dm3] 2R_17316573_SNP [dm6]	G	T	3.102e^-4	0.958	INTRON mbl
X	3319205	X_3319205_DEL [dm3] X_3425172_DEL [dm6]	TC	T	3.103e^-4	0.958	INTRON CR44999 & 1 other
3L	2051434	3L_2051434_SNP [dm3] 3L_2051434_SNP [dm6]	A	T	3.105e^-4	0.958	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3L	2856412	3L_2856412_SNP [dm3] 3L_2856412_SNP [dm6]	T	C	3.109e^-4	0.958	INTRON CG43444
3L	834130	3L_834130_SNP [dm3] 3L_834130_SNP [dm6]	A	G	3.114e^-4	0.958	START_GAINED CG42553 UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14506400	2R_14506400_SNP [dm3] 2R_18618895_SNP [dm6]	T	C	3.115e^-4	0.958	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14113168	3R_14113168_SNP [dm3] 3R_18287446_SNP [dm6]	C	T	3.117e^-4	0.958	SYNONYMOUS_CODING CG7131 DOWNSTREAM CG8064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14113393	3R_14113393_SNP [dm3] 3R_18287671_SNP [dm6]	C	T	3.119e^-4	0.958	SYNONYMOUS_CODING CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1436328	2L_1436328_SNP [dm3] 2L_1436328_SNP [dm6]	G	A	3.123e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13673782	2R_13673782_SNP [dm3] 2R_17786277_SNP [dm6]	T	G	3.124e^-4	0.958	INTRON aft
2R	17128919	2R_17128919_SNP [dm3] 2R_21241414_SNP [dm6]	A	G	3.134e^-4	0.958	INTRON ASPP
3L	12253428	3L_12253428_SNP [dm3] 3L_12260328_SNP [dm6]	A	T	3.144e^-4	0.958	INTRON app
3L	12141389	3L_12141389_SNP [dm3] 3L_12148289_SNP [dm6]	C	T	3.145e^-4	0.958	UPSTREAM eap INTRON Nrx-IV
3L	10307888	3L_10307888_SNP [dm3] 3L_10314788_SNP [dm6]	C	A	3.146e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15820397	3R_15820397_SNP [dm3] 3R_19994675_SNP [dm6]	A	T	3.150e^-4	0.958	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5442218	3L_5442218_SNP [dm3] 3L_5449118_SNP [dm6]	T	C	3.156e^-4	0.958	INTERGENIC
3L	1646789	3L_1646789_SNP [dm3] 3L_1646789_SNP [dm6]	G	C	3.158e^-4	0.958	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9232768	2L_9232768_SNP [dm3] 2L_9232768_SNP [dm6]	C	T	3.160e^-4	0.958	INTRON tai
3R	18235066	3R_18235066_SNP [dm3] 3R_22409344_SNP [dm6]	G	A	3.169e^-4	0.958	SPLICE_SITE_REGION CG13850 DOWNSTREAM CG13855 INTRON CG13850
3R	18844821	3R_18844821_SNP [dm3] 3R_23019099_SNP [dm6]	G	A	3.170e^-4	0.958	INTERGENIC
3R	27530148	3R_27530148_SNP [dm3] 3R_31704426_SNP [dm6]	G	C	3.175e^-4	0.958	DOWNSTREAM CR45052 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3R	17199761	3R_17199761_SNP [dm3] 3R_21374039_SNP [dm6]	T	G	3.178e^-4	0.958	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	21026843	2L_21026843_DEL [dm3] 2L_21026843_DEL [dm6]	AGCGGCCATGCACTCTCTCT...	A	3.179e^-4	0.958	INTRON CG42238	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11884533	3L_11884533_SNP [dm3] 3L_11891433_SNP [dm6]	C	T	3.180e^-4	0.958	INTRON CG44837
2L	3815332	2L_3815332_SNP [dm3] 2L_3815332_SNP [dm6]	A	T	3.182e^-4	0.958	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3815347	2L_3815347_SNP [dm3] 2L_3815347_SNP [dm6]	A	G	3.182e^-4	0.958	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3R	11303922	3R_11303922_SNP [dm3] 3R_15478200_SNP [dm6]	G	A	3.185e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	905195	2L_905195_SNP [dm3] 2L_905195_SNP [dm6]	C	T	3.197e^-4	0.958	DOWNSTREAM CR45261 INTERGENIC
X	15466509	X_15466509_SNP [dm3] X_15572476_SNP [dm6]	A	T	3.200e^-4	0.958	UPSTREAM CG15643 INTRON CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4173590	2R_4173590_SNP [dm3] 2R_8286085_SNP [dm6]	T	A	3.203e^-4	0.958	INTERGENIC
3R	26676626	3R_26676626_SNP [dm3] 3R_30850904_SNP [dm6]	C	T	3.204e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13208876	3L_13208876_SNP [dm3] 3L_13215776_SNP [dm6]	G	T	3.211e^-4	0.958	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13208892	3L_13208892_SNP [dm3] 3L_13215792_SNP [dm6]	C	G	3.211e^-4	0.958	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9106447	3L_9106447_DEL [dm3] 3L_9113347_DEL [dm6]	TGTTTT	T	3.217e^-4	0.958	UTR_5_PRIME bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15962718	2R_15962718_SNP [dm3] 2R_20075213_SNP [dm6]	A	T	3.218e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3172165	2R_3172165_SNP [dm3] 2R_7284660_SNP [dm6]	G	A	3.233e^-4	0.96	INTRON pwn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18243765	3R_18243765_SNP [dm3] 3R_22418043_SNP [dm6]	G	A	3.236e^-4	0.96	DOWNSTREAM lqfR INTRON lqfR
3R	26699347	3R_26699347_SNP [dm3] 3R_30873625_SNP [dm6]	G	C	3.245e^-4	0.961	DOWNSTREAM CG15546 INTERGENIC
3L	4700299	3L_4700299_SNP [dm3] 3L_4700299_SNP [dm6]	T	G	3.250e^-4	0.961	INTRON RhoGEF64C
3L	1751138	3L_1751138_SNP [dm3] 3L_1751138_SNP [dm6]	G	A	3.255e^-4	0.961	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3R	22516097	3R_22516097_SNP [dm3] 3R_26690375_SNP [dm6]	C	G	3.272e^-4	0.962	INTERGENIC
2R	5869115	2R_5869115_SNP [dm3] 2R_9981610_SNP [dm6]	T	A	3.279e^-4	0.962	DOWNSTREAM eve INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	5522484	2L_5522484_SNP [dm3] 2L_5522484_SNP [dm6]	G	A	3.305e^-4	0.962	INTRON CG7371
3R	10290287	3R_10290287_SNP [dm3] 3R_14464565_SNP [dm6]	T	A	3.308e^-4	0.962	INTRON cv-c
2L	2546350	2L_2546350_SNP [dm3] 2L_2546350_SNP [dm6]	G	A	3.309e^-4	0.962	INTERGENIC
2L	10105076	2L_10105076_DEL [dm3] 2L_10105076_DEL [dm6]	GAACT	A	3.324e^-4	0.962	INTRON CG44153 & 1 other
2R	17553513	2R_17553513_SNP [dm3] 2R_21666008_SNP [dm6]	A	G	3.345e^-4	0.962	NON_SYNONYMOUS_CODING CG42364 UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42365	TF binding site BDTNP1_TFBS_twi
2L	5164956	2L_5164956_SNP [dm3] 2L_5164956_SNP [dm6]	C	A	3.346e^-4	0.962	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2R	3163945	2R_3163945_SNP [dm3] 2R_7276440_SNP [dm6]	G	C	3.348e^-4	0.962	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12920751	3L_12920751_SNP [dm3] 3L_12927651_SNP [dm6]	T	C	3.358e^-4	0.962	INTERGENIC
3L	5613373	3L_5613373_SNP [dm3] 3L_5620273_SNP [dm6]	G	C	3.361e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24873867	3R_24873867_SNP [dm3] 3R_29048145_SNP [dm6]	A	G	3.367e^-4	0.962	UTR_3_PRIME Pkc98E
3L	1377643	3L_1377643_SNP [dm3] 3L_1377643_SNP [dm6]	C	T	3.374e^-4	0.962	INTRON Ptp61F & 1 other
X	12907478	X_12907478_SNP [dm3] X_13013445_SNP [dm6]	T	C	3.380e^-4	0.962	INTRON rad
3L	2398350	3L_2398350_SNP [dm3] 3L_2398350_SNP [dm6]	T	A	3.386e^-4	0.962	INTRON CG45186	TF binding site mE1_TFBS_inv
X	730365	X_730365_SNP [dm3] X_836332_SNP [dm6]	G	C	3.399e^-4	0.962	UTR_5_PRIME CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1178728	2L_1178728_SNP [dm3] 2L_1178728_SNP [dm6]	G	T	3.408e^-4	0.962	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18590504	2L_18590504_SNP [dm3] 2L_18590504_SNP [dm6]	T	C	3.419e^-4	0.962	UPSTREAM CG15160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11548564	2L_11548564_SNP [dm3] 2L_11548564_SNP [dm6]	C	A	3.420e^-4	0.962	DOWNSTREAM CR44494 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	7591072	X_7591072_SNP [dm3] X_7697039_SNP [dm6]	T	C	3.430e^-4	0.962	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	10213337	X_10213337_SNP [dm3] X_10319304_SNP [dm6]	A	G	3.439e^-4	0.962	INTRON alpha-Man-I
3L	10736716	3L_10736716_INS [dm3] 3L_10743616_INS [dm6]	A	ACATA	3.452e^-4	0.962	INTERGENIC
3R	26522208	3R_26522208_SNP [dm3] 3R_30696486_SNP [dm6]	C	T	3.454e^-4	0.962	UPSTREAM CG12069 INTRON Pka-C2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14399084	2L_14399084_SNP [dm3] 2L_14399084_SNP [dm6]	G	A	3.459e^-4	0.962	INTRON elB
2R	4441396	2R_4441396_SNP [dm3] 2R_8553891_SNP [dm6]	C	G	3.463e^-4	0.962	INTERGENIC
3L	11852643	3L_11852643_DEL [dm3] 3L_11859543_DEL [dm6]	AGGT	G	3.473e^-4	0.962	INTRON CG44837
3R	17208764	3R_17208764_SNP [dm3] 3R_21383042_SNP [dm6]	A	T	3.476e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs
3R	13949105	3R_13949105_SNP [dm3] 3R_18123383_SNP [dm6]	C	T	3.479e^-4	0.962	INTRON sr	TF binding site mE1_TFBS_inv
3L	14829519	3L_14829519_SNP [dm3] 3L_14836419_SNP [dm6]	C	T	3.481e^-4	0.962	INTRON CG17839
2R	3173013	2R_3173013_SNP [dm3] 2R_7285508_SNP [dm6]	A	C	3.483e^-4	0.962	INTRON pwn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	17116195	2R_17116195_SNP [dm3] 2R_21228690_SNP [dm6]	A	G	3.488e^-4	0.962	INTRON ASPP
3L	18112600	3L_18112600_SNP [dm3] 3L_18119500_SNP [dm6]	C	T	3.488e^-4	0.962	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
X	8086313	X_8086313_SNP [dm3] X_8192280_SNP [dm6]	T	A	3.498e^-4	0.962	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11127702	3L_11127702_SNP [dm3] 3L_11134602_SNP [dm6]	A	T	3.501e^-4	0.962	UTR_3_PRIME CG42575 UPSTREAM CG14143
X	9245021	X_9245021_SNP [dm3] X_9350988_SNP [dm6]	G	T	3.503e^-4	0.962	INTRON CG34449
3R	11303930	3R_11303930_SNP [dm3] 3R_15478208_SNP [dm6]	T	C	3.511e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15418838	3R_15418838_SNP [dm3] 3R_19593116_SNP [dm6]	C	T	3.524e^-4	0.962	SYNONYMOUS_CODING Dys
3R	22056573	3R_22056573_SNP [dm3] 3R_26230851_SNP [dm6]	T	C	3.532e^-4	0.962	SYNONYMOUS_CODING CG12290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15466454	X_15466454_SNP [dm3] X_15572421_SNP [dm6]	A	G	3.535e^-4	0.962	SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9438847	2R_9438847_SNP [dm3] 2R_13551342_SNP [dm6]	A	C	3.548e^-4	0.962	UTR_5_PRIME CG33156 INTRON CG33156
3L	11195460	3L_11195460_SNP [dm3] 3L_11202360_SNP [dm6]	G	A	3.549e^-4	0.962	DOWNSTREAM CG14141 INTRON Plod
3L	393306	3L_393306_SNP [dm3] 3L_393306_SNP [dm6]	A	T	3.563e^-4	0.962	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
X	4602481	X_4602481_INS [dm3] X_4708448_INS [dm6]	A	ACAA	3.564e^-4	0.962	UPSTREAM Proc-R DOWNSTREAM CG7024 INTRON Proc-R
2L	10105063	2L_10105063_SNP [dm3] 2L_10105063_SNP [dm6]	G	T	3.567e^-4	0.962	INTRON CG44153 & 1 other
X	14464308	X_14464308_SNP [dm3] X_14570275_SNP [dm6]	C	G	3.572e^-4	0.962	INTERGENIC
X	18474508	X_18474508_SNP [dm3] X_18580475_SNP [dm6]	T	A	3.574e^-4	0.962	INTERGENIC
3L	4098733	3L_4098733_SNP [dm3] 3L_4098733_SNP [dm6]	G	A	3.580e^-4	0.962	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	19628394	2R_19628394_SNP [dm3] 2R_23740871_SNP [dm6]	T	G	3.584e^-4	0.962	INTRON egl
3R	16726278	3R_16726278_SNP [dm3] 3R_20900556_SNP [dm6]	G	A	3.596e^-4	0.962	INTERGENIC
2L	3696721	2L_3696721_DEL [dm3] 2L_3696721_DEL [dm6]	GCTGG	G	3.598e^-4	0.962	UPSTREAM CG16712 DOWNSTREAM CG3604 INTERGENIC
2R	5160975	2R_5160975_SNP [dm3] 2R_9273470_SNP [dm6]	A	G	3.606e^-4	0.962	UPSTREAM Pkn INTRON Pkn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9526030	X_9526030_SNP [dm3] X_9631997_SNP [dm6]	C	T	3.610e^-4	0.962	INTRON l_1_G0232
3L	14496879	3L_14496879_SNP [dm3] 3L_14503779_SNP [dm6]	A	T	3.619e^-4	0.962	INTRON bbg
3L	13984197	3L_13984197_SNP [dm3] 3L_13991097_SNP [dm6]	T	C	3.619e^-4	0.962	INTRON CG17364	TF binding site BDTNP1_TFBS_dl
3L	8074825	3L_8074825_SNP [dm3] 3L_8081725_SNP [dm6]	A	G	3.619e^-4	0.962	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3508820	2L_3508820_SNP [dm3] 2L_3508820_SNP [dm6]	C	G	3.620e^-4	0.962	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2R	14606653	2R_14606653_SNP [dm3] 2R_18719148_SNP [dm6]	G	C	3.641e^-4	0.962	INTRON Hs3st-A
2R	14703871	2R_14703871_SNP [dm3] 2R_18816366_SNP [dm6]	C	T	3.643e^-4	0.962	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
2R	12439365	2R_12439365_SNP [dm3] 2R_16551860_SNP [dm6]	C	G	3.660e^-4	0.962	UPSTREAM Syn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16547988	X_16547988_SNP [dm3] X_16653955_SNP [dm6]	G	A	3.662e^-4	0.962	SYNONYMOUS_CODING CG9723 DOWNSTREAM CG32573 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3537238	3L_3537238_SNP [dm3] 3L_3537238_SNP [dm6]	C	G	3.668e^-4	0.962	INTRON Eip63E
2L	9857975	2L_9857975_SNP [dm3] 2L_9857975_SNP [dm6]	A	G	3.674e^-4	0.962	INTRON nAChRalpha6
3R	19944972	3R_19944972_SNP [dm3] 3R_24119250_SNP [dm6]	A	T	3.674e^-4	0.962	INTRON Rootletin
2L	6303995	2L_6303995_SNP [dm3] 2L_6303995_SNP [dm6]	G	A	3.677e^-4	0.962	INTRON Ddr
X	14464299	X_14464299_SNP [dm3] X_14570266_SNP [dm6]	A	G	3.691e^-4	0.962	INTERGENIC
2L	4002739	2L_4002739_SNP [dm3] 2L_4002739_SNP [dm6]	A	G	3.692e^-4	0.962	INTERGENIC
3R	16719862	3R_16719862_SNP [dm3] 3R_20894140_SNP [dm6]	G	A	3.693e^-4	0.962	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
3L	21153922	3L_21153922_SNP [dm3] 3L_21160822_SNP [dm6]	C	T	3.694e^-4	0.962	UTR_5_PRIME Ac78C
3L	1042795	3L_1042795_SNP [dm3] 3L_1042795_SNP [dm6]	A	T	3.705e^-4	0.962	INTRON bab1
3R	10150304	3R_10150304_SNP [dm3] 3R_14324582_SNP [dm6]	A	G	3.707e^-4	0.962	SYNONYMOUS_CODING Afti
2L	1177062	2L_1177062_SNP [dm3] 2L_1177062_SNP [dm6]	G	A	3.707e^-4	0.962	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_sens
3R	21895001	3R_21895001_SNP [dm3] 3R_26069279_SNP [dm6]	A	C	3.709e^-4	0.962	INTERGENIC
2L	21170607	2L_21170607_SNP [dm3] 2L_21170607_SNP [dm6]	C	T	3.715e^-4	0.962	SYNONYMOUS_CODING Acon	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3622792	2R_3622792_SNP [dm3] 2R_7735287_SNP [dm6]	G	T	3.717e^-4	0.962	UTR_5_PRIME CG18812 INTRON CG18812
3L	9511626	3L_9511626_SNP [dm3] 3L_9518526_SNP [dm6]	G	C	3.718e^-4	0.962	INTRON CG33700
X	7668944	X_7668944_SNP [dm3] X_7774911_SNP [dm6]	T	A	3.737e^-4	0.962	INTERGENIC
3L	11434358	3L_11434358_SNP [dm3] 3L_11441258_SNP [dm6]	A	T	3.744e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7277989	2R_7277989_SNP [dm3] 2R_11390484_SNP [dm6]	C	T	3.749e^-4	0.962	INTRON sprt
3L	15696880	3L_15696880_SNP [dm3] 3L_15703780_SNP [dm6]	A	T	3.753e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	17197963	3R_17197963_SNP [dm3] 3R_21372241_SNP [dm6]	C	T	3.755e^-4	0.962	UTR_3_PRIME mod_mdg4_ INTRON mod_mdg4_
3R	14828115	3R_14828115_DEL [dm3] 3R_19002393_DEL [dm6]	GG	G	3.757e^-4	0.962	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13089658	2L_13089658_SNP [dm3] 2L_13089658_SNP [dm6]	A	G	3.762e^-4	0.962	UPSTREAM CR44197 INTERGENIC
3L	13187977	3L_13187977_SNP [dm3] 3L_13194877_SNP [dm6]	T	C	3.763e^-4	0.962	INTERGENIC
X	12189299	X_12189299_SNP [dm3] X_12295266_SNP [dm6]	G	A	3.763e^-4	0.962	SYNONYMOUS_CODING Ten-a
X	15466508	X_15466508_SNP [dm3] X_15572475_SNP [dm6]	A	T	3.764e^-4	0.962	UPSTREAM CG15643 INTRON CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	765316	2L_765316_SNP [dm3] 2L_765316_SNP [dm6]	G	C	3.768e^-4	0.962	INTERGENIC
3R	13928380	3R_13928380_DEL [dm3] 3R_18102658_DEL [dm6]	TGACTGGCGATCCTTTCCTA...	T	3.776e^-4	0.962	INTRON sr
2L	7017383	2L_7017383_SNP [dm3] 2L_7017383_SNP [dm6]	G	A	3.801e^-4	0.962	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	907603	2L_907603_SNP [dm3] 2L_907603_SNP [dm6]	G	A	3.808e^-4	0.962	INTERGENIC
3L	12141373	3L_12141373_DEL [dm3] 3L_12148273_DEL [dm6]	CCT	C	3.812e^-4	0.962	UPSTREAM eap INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
3L	12141384	3L_12141384_SNP [dm3] 3L_12148284_SNP [dm6]	T	A	3.812e^-4	0.962	UPSTREAM eap INTRON Nrx-IV
3L	12141385	3L_12141385_SNP [dm3] 3L_12148285_SNP [dm6]	A	G	3.812e^-4	0.962	UPSTREAM eap INTRON Nrx-IV
2R	13204360	2R_13204360_INS [dm3] 2R_17316855_INS [dm6]	T	TT	3.816e^-4	0.962	INTRON mbl
X	16809011	X_16809011_SNP [dm3] X_16914978_SNP [dm6]	T	A	3.827e^-4	0.962	INTRON CG4928
2L	1610797	2L_1610797_SNP [dm3] 2L_1610797_SNP [dm6]	A	C	3.833e^-4	0.962	NON_SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14506385	2R_14506385_SNP [dm3] 2R_18618880_SNP [dm6]	A	G	3.858e^-4	0.962	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14642768	3L_14642768_SNP [dm3] 3L_14649668_SNP [dm6]	G	C	3.861e^-4	0.962	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18590505	2L_18590505_SNP [dm3] 2L_18590505_SNP [dm6]	A	T	3.863e^-4	0.962	UPSTREAM CG15160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26734758	3R_26734758_SNP [dm3] 3R_30909036_SNP [dm6]	A	G	3.863e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1173183	2L_1173183_SNP [dm3] 2L_1173183_SNP [dm6]	T	A	3.865e^-4	0.962	UTR_5_PRIME CG4887 UPSTREAM CG5118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9482019	3L_9482019_SNP [dm3] 3L_9488919_SNP [dm6]	G	C	3.868e^-4	0.962	DOWNSTREAM CG32037 INTRON CG32036
2R	15367744	2R_15367744_SNP [dm3] 2R_19480239_SNP [dm6]	A	G	3.875e^-4	0.962	INTRON par-1
X	8403113	X_8403113_SNP [dm3] X_8509080_SNP [dm6]	C	T	3.875e^-4	0.962	UPSTREAM CG33181 INTRON CG33181
X	8403115	X_8403115_DEL [dm3] X_8509082_DEL [dm6]	TC	T	3.875e^-4	0.962	UPSTREAM CG33181 INTRON CG33181
X	8403125	X_8403125_INS [dm3] X_8509092_INS [dm6]	T	TTTATATTA	3.875e^-4	0.962	UPSTREAM CG33181 INTRON CG33181
2R	16774009	2R_16774009_SNP [dm3] 2R_20886504_SNP [dm6]	G	T	3.876e^-4	0.962	INTRON otp
2L	2357882	2L_2357882_SNP [dm3] 2L_2357882_SNP [dm6]	C	T	3.878e^-4	0.962	UTR_3_PRIME eys UPSTREAM CG9967	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17195776	3R_17195776_SNP [dm3] 3R_21370054_SNP [dm6]	C	A	3.884e^-4	0.962	DOWNSTREAM mod_mdg4_ & 3 others INTRON mod_mdg4_
2R	16528106	2R_16528106_SNP [dm3] 2R_20640601_SNP [dm6]	G	A	3.885e^-4	0.962	UTR_5_PRIME rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16412268	2L_16412268_SNP [dm3] 2L_16412268_SNP [dm6]	T	C	3.886e^-4	0.962	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10736697	3L_10736697_SNP [dm3] 3L_10743597_SNP [dm6]	T	C	3.890e^-4	0.962	INTERGENIC
2L	1610643	2L_1610643_SNP [dm3] 2L_1610643_SNP [dm6]	C	G	3.899e^-4	0.962	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11292452	3R_11292452_SNP [dm3] 3R_15466730_SNP [dm6]	T	G	3.900e^-4	0.962	INTRON AdamTS-A
3L	947811	3L_947811_SNP [dm3] 3L_947811_SNP [dm6]	T	C	3.900e^-4	0.962	INTRON Glut1
3L	947813	3L_947813_DEL [dm3] 3L_947813_DEL [dm6]	CT	C	3.900e^-4	0.962	INTRON Glut1
3R	15428659	3R_15428659_SNP [dm3] 3R_19602937_SNP [dm6]	A	G	3.905e^-4	0.962	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
2R	19541605	2R_19541605_SNP [dm3] 2R_23654082_SNP [dm6]	C	T	3.916e^-4	0.962	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17930015	3L_17930015_SNP [dm3] 3L_17936915_SNP [dm6]	G	C	3.927e^-4	0.962	INTRON CG43174
3L	11852768	3L_11852768_SNP [dm3] 3L_11859668_SNP [dm6]	T	A	3.945e^-4	0.962	INTRON CG44837
2R	17042911	2R_17042911_SNP [dm3] 2R_21155406_SNP [dm6]	A	G	3.946e^-4	0.962	SPLICE_SITE_REGION CG30389 SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3549071	X_3549071_INS [dm3] X_3655038_INS [dm6]	A	AAACA	3.960e^-4	0.962	INTRON AstA-R1
2L	2169623	2L_2169623_SNP [dm3] 2L_2169623_SNP [dm6]	G	T	3.981e^-4	0.962	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12141244	3L_12141244_SNP [dm3] 3L_12148144_SNP [dm6]	T	C	3.982e^-4	0.962	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
2R	16581312	2R_16581312_SNP [dm3] 2R_20693807_SNP [dm6]	A	T	3.985e^-4	0.962	DOWNSTREAM CG13438 INTERGENIC
3R	4016408	3R_4016408_SNP [dm3] 3R_8190686_SNP [dm6]	A	C	3.986e^-4	0.962	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	18289504	2R_18289504_SNP [dm3] 2R_22401999_SNP [dm6]	C	T	3.988e^-4	0.962	UTR_5_PRIME babos DOWNSTREAM CR44760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6850229	2R_6850229_SNP [dm3] 2R_10962724_SNP [dm6]	C	T	3.991e^-4	0.962	INTERGENIC
X	22004332	X_22004332_SNP [dm3] X_22602496_SNP [dm6]	C	A	3.994e^-4	0.962	INTRON Cda4	transposable element FlyBase
3L	916618	3L_916618_SNP [dm3] 3L_916618_SNP [dm6]	C	G	3.998e^-4	0.962	INTRON Glut1
3R	17199520	3R_17199520_SNP [dm3] 3R_21373798_SNP [dm6]	T	C	4.004e^-4	0.962	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	6693348	2L_6693348_SNP [dm3] 2L_6693348_SNP [dm6]	C	T	4.006e^-4	0.962	INTRON Tsp	TF binding site mE1_TFBS_chinmo
2R	9747162	2R_9747162_SNP [dm3] 2R_13859657_SNP [dm6]	A	C	4.009e^-4	0.962	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9395768	3L_9395768_SNP [dm3] 3L_9402668_SNP [dm6]	C	G	4.013e^-4	0.962	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9395770	3L_9395770_DEL [dm3] 3L_9402670_DEL [dm6]	TTC	AA	4.013e^-4	0.962	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2169664	2L_2169664_SNP [dm3] 2L_2169664_SNP [dm6]	A	G	4.016e^-4	0.962	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	739994	X_739994_SNP [dm3] X_845961_SNP [dm6]	C	T	4.024e^-4	0.962	DOWNSTREAM CG3713 & 1 other INTRON CG43867
3L	1409588	3L_1409588_SNP [dm3] 3L_1409588_SNP [dm6]	C	A	4.039e^-4	0.962	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18212580	X_18212580_SNP [dm3] X_18318547_SNP [dm6]	A	T	4.041e^-4	0.962	INTRON CG6023
2L	3221730	2L_3221730_SNP [dm3] 2L_3221730_SNP [dm6]	G	A	4.041e^-4	0.962	INTERGENIC
3R	14146574	3R_14146574_SNP [dm3] 3R_18320852_SNP [dm6]	T	G	4.044e^-4	0.962	INTRON CG31235
2L	11692251	2L_11692251_SNP [dm3] 2L_11692251_SNP [dm6]	A	G	4.050e^-4	0.962	INTERGENIC
3R	18731336	3R_18731336_INS [dm3] 3R_22905614_INS [dm6]	TGGT	ACTAAA	4.062e^-4	0.962	INTRON klg
3L	12772173	3L_12772173_SNP [dm3] 3L_12779073_SNP [dm6]	C	T	4.064e^-4	0.962	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG32106
3L	12254450	3L_12254450_SNP [dm3] 3L_12261350_SNP [dm6]	C	A	4.069e^-4	0.962	INTRON app
3L	16246188	3L_16246188_INS [dm3] 3L_16253088_INS [dm6]	G	AA	4.071e^-4	0.962	UPSTREAM CG13055 INTERGENIC
3R	13817385	3R_13817385_SNP [dm3] 3R_17991663_SNP [dm6]	C	G	4.073e^-4	0.962	INTRON cpo
2R	10439005	2R_10439005_SNP [dm3] 2R_14551500_SNP [dm6]	C	T	4.080e^-4	0.962	INTRON ttv
2L	1955683	2L_1955683_SNP [dm3] 2L_1955683_SNP [dm6]	T	C	4.081e^-4	0.962	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7875889	3L_7875889_SNP [dm3] 3L_7882789_SNP [dm6]	G	A	4.083e^-4	0.962	INTRON CG32365
3L	9013281	3L_9013281_SNP [dm3] 3L_9020181_SNP [dm6]	C	A	4.085e^-4	0.962	UPSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1179709	2L_1179709_DEL [dm3] 2L_1179709_DEL [dm6]	ATCGAATCTTACGTAA...	A	4.086e^-4	0.962	UTR_3_PRIME CG4896 INTRON CG4896
3R	8716198	3R_8716198_SNP [dm3] 3R_12890476_SNP [dm6]	G	C	4.086e^-4	0.962	INTERGENIC
2R	19146006	2R_19146006_SNP [dm3] 2R_23258483_SNP [dm6]	A	C	4.087e^-4	0.962	INTERGENIC
3L	12141361	3L_12141361_SNP [dm3] 3L_12148261_SNP [dm6]	T	A	4.089e^-4	0.962	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
2R	18973287	2R_18973287_SNP [dm3] 2R_23085764_SNP [dm6]	T	G	4.092e^-4	0.962	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2534803	2L_2534803_INS [dm3] 2L_2534803_INS [dm6]	G	GTTGCCTCCTCG...	4.093e^-4	0.962	INTERGENIC
3L	10507207	3L_10507207_SNP [dm3] 3L_10514107_SNP [dm6]	A	G	4.093e^-4	0.962	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21841680	3R_21841680_SNP [dm3] 3R_26015958_SNP [dm6]	G	A	4.097e^-4	0.962	UTR_3_PRIME Kaz-m1 DOWNSTREAM Kaz-m1 & 1 other EXON CR45040	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	20881233	X_20881233_SNP [dm3] X_21010206_SNP [dm6]	T	C	4.100e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9229809	3R_9229809_SNP [dm3] 3R_13404087_SNP [dm6]	T	A	4.102e^-4	0.962	NON_SYNONYMOUS_CODING yellow-e3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13817383	3R_13817383_SNP [dm3] 3R_17991661_SNP [dm6]	C	T	4.104e^-4	0.962	INTRON cpo
X	18212342	X_18212342_SNP [dm3] X_18318309_SNP [dm6]	A	G	4.111e^-4	0.962	INTRON CG6023
2L	5275554	2L_5275554_SNP [dm3] 2L_5275554_SNP [dm6]	C	A	4.117e^-4	0.962	NON_SYNONYMOUS_CODING Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	3503397	2R_3503397_SNP [dm3] 2R_7615892_SNP [dm6]	G	A	4.120e^-4	0.962	INTRON CG1358
3R	8512927	3R_8512927_SNP [dm3] 3R_12687205_SNP [dm6]	G	T	4.125e^-4	0.962	INTRON kar
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	4.132e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	14397420	2R_14397420_SNP [dm3] 2R_18509915_SNP [dm6]	G	T	4.133e^-4	0.962	INTERGENIC
X	17368715	X_17368715_SNP [dm3] X_17474682_SNP [dm6]	T	C	4.135e^-4	0.962	INTRON CG43658
X	10211674	X_10211674_SNP [dm3] X_10317641_SNP [dm6]	T	C	4.145e^-4	0.962	INTRON alpha-Man-I
3L	7859040	3L_7859040_SNP [dm3] 3L_7865940_SNP [dm6]	T	A	4.146e^-4	0.962	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	17437346	2R_17437346_SNP [dm3] 2R_21549841_SNP [dm6]	T	G	4.150e^-4	0.962	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7551156	3R_7551156_SNP [dm3] 3R_11725434_SNP [dm6]	G	A	4.151e^-4	0.962	INTRON CG12594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1213245	2L_1213245_SNP [dm3] 2L_1213245_SNP [dm6]	G	A	4.152e^-4	0.962	INTERGENIC
2L	3635565	2L_3635565_SNP [dm3] 2L_3635565_SNP [dm6]	A	T	4.153e^-4	0.962	INTRON for
2L	9858071	2L_9858071_SNP [dm3] 2L_9858071_SNP [dm6]	T	G	4.158e^-4	0.962	INTRON nAChRalpha6
3L	14109841	3L_14109841_SNP [dm3] 3L_14116741_SNP [dm6]	A	T	4.162e^-4	0.962	INTRON Sox21b
3R	12189904	3R_12189904_SNP [dm3] 3R_16364182_SNP [dm6]	A	C	4.172e^-4	0.963	INTRON CG14880
3L	16246175	3L_16246175_DEL [dm3] 3L_16253075_DEL [dm6]	GA	G	4.186e^-4	0.965	UPSTREAM CG13055 INTERGENIC
3L	10736565	3L_10736565_SNP [dm3] 3L_10743465_SNP [dm6]	G	A	4.200e^-4	0.965	INTERGENIC
2L	2839165	2L_2839165_SNP [dm3] 2L_2839165_SNP [dm6]	T	A	4.202e^-4	0.965	NON_SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7488738	3R_7488738_SNP [dm3] 3R_11663016_SNP [dm6]	C	T	4.208e^-4	0.965	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6090169	3L_6090169_SNP [dm3] 3L_6097069_SNP [dm6]	C	G	4.218e^-4	0.965	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
2R	6293973	2R_6293973_SNP [dm3] 2R_10406468_SNP [dm6]	C	T	4.222e^-4	0.965	DOWNSTREAM CG12898 INTRON CG42732
2R	17863228	2R_17863228_DEL [dm3] 2R_21975723_DEL [dm6]	ACA	A	4.224e^-4	0.965	UTR_3_PRIME CG9304 UPSTREAM Gr58c
X	18213695	X_18213695_SNP [dm3] X_18319662_SNP [dm6]	C	T	4.225e^-4	0.965	INTRON CG6023
3L	2398348	3L_2398348_SNP [dm3] 3L_2398348_SNP [dm6]	G	A	4.231e^-4	0.965	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	26679969	3R_26679969_SNP [dm3] 3R_30854247_SNP [dm6]	C	G	4.243e^-4	0.965	UTR_3_PRIME tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8006653	3L_8006653_SNP [dm3] 3L_8013553_SNP [dm6]	A	G	4.244e^-4	0.965	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12141421	3L_12141421_SNP [dm3] 3L_12148321_SNP [dm6]	A	G	4.254e^-4	0.965	UPSTREAM eap INTRON Nrx-IV
2R	6295489	2R_6295489_SNP [dm3] 2R_10407984_SNP [dm6]	A	G	4.262e^-4	0.965	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
X	13227993	X_13227993_SNP [dm3] X_13333960_SNP [dm6]	A	G	4.268e^-4	0.965	INTERGENIC
X	8224407	X_8224407_SNP [dm3] X_8330374_SNP [dm6]	G	A	4.269e^-4	0.965	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2398353	3L_2398353_DEL [dm3] 3L_2398353_DEL [dm6]	GG	G	4.289e^-4	0.965	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	16412293	2L_16412293_SNP [dm3] 2L_16412293_SNP [dm6]	T	C	4.290e^-4	0.965	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6268118	2L_6268118_SNP [dm3] 2L_6268118_SNP [dm6]	C	T	4.300e^-4	0.965	INTRON Ddr
3R	2186828	3R_2186828_INS [dm3] 3R_6361106_INS [dm6]	A	ACAAA	4.303e^-4	0.965	UTR_3_PRIME Pak DOWNSTREAM Pak & 1 other
2R	3840102	2R_3840102_SNP [dm3] 2R_7952597_SNP [dm6]	C	A	4.311e^-4	0.965	INTRON CG14764
2L	9856695	2L_9856695_SNP [dm3] 2L_9856695_SNP [dm6]	G	C	4.318e^-4	0.965	INTRON nAChRalpha6
3R	26673175	3R_26673175_SNP [dm3] 3R_30847453_SNP [dm6]	T	A	4.322e^-4	0.965	INTERGENIC
3L	16270212	3L_16270212_SNP [dm3] 3L_16277112_SNP [dm6]	A	C	4.343e^-4	0.965	UPSTREAM CG13065 INTERGENIC
3L	9515078	3L_9515078_SNP [dm3] 3L_9521978_SNP [dm6]	G	T	4.358e^-4	0.965	INTRON CG33700
3L	11105315	3L_11105315_SNP [dm3] 3L_11112215_SNP [dm6]	G	A	4.364e^-4	0.965	DOWNSTREAM Sod & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	8613956	3R_8613956_INS [dm3] 3R_12788234_INS [dm6]	T	TTTCCCT	4.370e^-4	0.965	INTERGENIC
2L	3696739	2L_3696739_SNP [dm3] 2L_3696739_SNP [dm6]	A	G	4.378e^-4	0.965	UPSTREAM CG16712 DOWNSTREAM CG3604 INTERGENIC
2R	6771323	2R_6771323_SNP [dm3] 2R_10883818_SNP [dm6]	A	C	4.380e^-4	0.965	NON_SYNONYMOUS_CODING CG18003 DOWNSTREAM Pex6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16669534	3L_16669534_SNP [dm3] 3L_16676434_SNP [dm6]	A	C	4.380e^-4	0.965	UTR_3_PRIME Lasp DOWNSTREAM CG13032
2L	12313918	2L_12313918_SNP [dm3] 2L_12313918_SNP [dm6]	C	T	4.389e^-4	0.965	DOWNSTREAM aret INTERGENIC
3L	8006594	3L_8006594_SNP [dm3] 3L_8013494_SNP [dm6]	G	A	4.392e^-4	0.965	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	15236213	3L_15236213_SNP [dm3] 3L_15243113_SNP [dm6]	T	A	4.396e^-4	0.965	DOWNSTREAM Tollo INTERGENIC
3L	16270132	3L_16270132_SNP [dm3] 3L_16277032_SNP [dm6]	T	G	4.398e^-4	0.965	UPSTREAM CG13065 INTERGENIC
3L	11852542	3L_11852542_SNP [dm3] 3L_11859442_SNP [dm6]	A	C	4.408e^-4	0.965	INTRON CG44837
3R	26661723	3R_26661723_SNP [dm3] 3R_30836001_SNP [dm6]	G	A	4.409e^-4	0.965	INTRON CG15544
2L	1138644	2L_1138644_SNP [dm3] 2L_1138644_SNP [dm6]	G	A	4.418e^-4	0.965	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_chinmo
3R	25691004	3R_25691004_SNP [dm3] 3R_29865282_SNP [dm6]	T	C	4.419e^-4	0.965	UTR_5_PRIME Zip99C
3R	9354937	3R_9354937_SNP [dm3] 3R_13529215_SNP [dm6]	G	A	4.419e^-4	0.965	UTR_5_PRIME CG42778
2L	2736871	2L_2736871_SNP [dm3] 2L_2736871_SNP [dm6]	T	A	4.424e^-4	0.965	UPSTREAM mir-4914 INTRON CG31689
3R	16712748	3R_16712748_SNP [dm3] 3R_20887026_SNP [dm6]	G	T	4.431e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19203422	2R_19203422_SNP [dm3] 2R_23315899_SNP [dm6]	T	A	4.431e^-4	0.965	INTERGENIC
3R	18322269	3R_18322269_SNP [dm3] 3R_22496547_SNP [dm6]	T	C	4.439e^-4	0.965	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17043827	2R_17043827_SNP [dm3] 2R_21156322_SNP [dm6]	G	A	4.445e^-4	0.965	INTRON CG30389
2L	2241133	2L_2241133_SNP [dm3] 2L_2241133_SNP [dm6]	C	A	4.452e^-4	0.965	UPSTREAM Tengl1 INTERGENIC
3R	10381861	3R_10381861_SNP [dm3] 3R_14556139_SNP [dm6]	G	A	4.458e^-4	0.965	UPSTREAM Pde6 INTRON Pde6
3L	11106886	3L_11106886_SNP [dm3] 3L_11113786_SNP [dm6]	T	C	4.470e^-4	0.965	UPSTREAM Sod DOWNSTREAM fd68A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10550605	3R_10550605_INS [dm3] 3R_14724883_INS [dm6]	A	AA	4.480e^-4	0.965	UTR_3_PRIME CG7530 UPSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	18798242	3R_18798242_SNP [dm3] 3R_22972520_SNP [dm6]	G	A	4.487e^-4	0.965	INTERGENIC
3L	11882581	3L_11882581_SNP [dm3] 3L_11889481_SNP [dm6]	T	G	4.493e^-4	0.965	UPSTREAM CG5897 INTRON CG44837
X	4503242	X_4503242_SNP [dm3] X_4609209_SNP [dm6]	C	A	4.499e^-4	0.965	INTRON CR32773
3R	26716469	3R_26716469_SNP [dm3] 3R_30890747_SNP [dm6]	A	G	4.508e^-4	0.965	INTERGENIC
2L	7256499	2L_7256499_SNP [dm3] 2L_7256499_SNP [dm6]	T	G	4.516e^-4	0.965	SYNONYMOUS_CODING Wnt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7279335	3L_7279335_SNP [dm3] 3L_7286235_SNP [dm6]	A	G	4.533e^-4	0.965	INTRON unc-13-4A
3L	6090171	3L_6090171_SNP [dm3] 3L_6097071_SNP [dm6]	G	C	4.535e^-4	0.965	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
3L	11049427	3L_11049427_SNP [dm3] 3L_11056327_SNP [dm6]	G	A	4.537e^-4	0.965	UPSTREAM CG7888 INTRON CG7888
3L	11112363	3L_11112363_SNP [dm3] 3L_11119263_SNP [dm6]	G	A	4.541e^-4	0.965	UTR_5_PRIME fd68A UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	15095319	2R_15095319_SNP [dm3] 2R_19207814_SNP [dm6]	C	T	4.541e^-4	0.965	INTRON hppy
2R	19022162	2R_19022162_SNP [dm3] 2R_23134639_SNP [dm6]	G	A	4.543e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17641899	3R_17641899_DEL [dm3] 3R_21816177_DEL [dm6]	GC	G	4.547e^-4	0.965	INTRON CASK
3R	14878819	3R_14878819_SNP [dm3] 3R_19053097_SNP [dm6]	A	G	4.551e^-4	0.965	INTRON cdi
3R	15192106	3R_15192106_DEL [dm3] 3R_19366384_DEL [dm6]	GG	G	4.556e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3170392	X_3170392_SNP [dm3] X_3276359_SNP [dm6]	C	T	4.559e^-4	0.965	INTRON dnc
3R	7555374	3R_7555374_SNP [dm3] 3R_11729652_SNP [dm6]	C	A	4.563e^-4	0.965	NON_SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13975813	3R_13975813_SNP [dm3] 3R_18150091_SNP [dm6]	G	A	4.563e^-4	0.965	INTERGENIC
3L	9519573	3L_9519573_SNP [dm3] 3L_9526473_SNP [dm6]	A	T	4.565e^-4	0.965	UPSTREAM CG33700 INTERGENIC
3L	17673148	3L_17673148_SNP [dm3] 3L_17680048_SNP [dm6]	A	C	4.566e^-4	0.965	INTRON CG34251
2R	4178577	2R_4178577_INS [dm3] 2R_8291072_INS [dm6]	G	GCCACGG	4.578e^-4	0.965	INTERGENIC
3R	17742637	3R_17742637_SNP [dm3] 3R_21916915_SNP [dm6]	G	T	4.579e^-4	0.965	INTERGENIC
2L	20439416	2L_20439416_SNP [dm3] 2L_20439416_SNP [dm6]	A	G	4.590e^-4	0.965	UPSTREAM CR43607 INTRON CG31688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19361445	X_19361445_DEL [dm3] X_19467412_DEL [dm6]	CAGTTCATTCGATCGTCATT...	C	4.596e^-4	0.965	INTRON kek5
3R	26523715	3R_26523715_SNP [dm3] 3R_30697993_SNP [dm6]	C	T	4.601e^-4	0.965	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26673168	3R_26673168_SNP [dm3] 3R_30847446_SNP [dm6]	G	C	4.602e^-4	0.965	INTERGENIC
3L	2398289	3L_2398289_SNP [dm3] 3L_2398289_SNP [dm6]	T	C	4.606e^-4	0.965	INTRON CG45186	TF binding site mE1_TFBS_inv
X	737543	X_737543_SNP [dm3] X_843510_SNP [dm6]	T	C	4.617e^-4	0.965	INTRON CG43867	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	5722385	3R_5722385_SNP [dm3] 3R_9896663_SNP [dm6]	G	T	4.626e^-4	0.965	INTRON Glut4EF
2R	19143357	2R_19143357_SNP [dm3] 2R_23255834_SNP [dm6]	T	G	4.634e^-4	0.965	INTERGENIC
2R	3163933	2R_3163933_SNP [dm3] 2R_7276428_SNP [dm6]	G	A	4.637e^-4	0.965	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5425214	X_5425214_SNP [dm3] X_5531181_SNP [dm6]	A	T	4.638e^-4	0.965	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11237010	X_11237010_SNP [dm3] X_11342977_SNP [dm6]	A	C	4.643e^-4	0.965	INTRON CG34348
2L	10676378	2L_10676378_SNP [dm3] 2L_10676378_SNP [dm6]	C	A	4.647e^-4	0.965	UPSTREAM CG17104 INTERGENIC	transposable element FlyBase
2R	18571401	2R_18571401_SNP [dm3] 2R_22683896_SNP [dm6]	G	T	4.648e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	7095591	2L_7095591_SNP [dm3] 2L_7095591_SNP [dm6]	T	A	4.648e^-4	0.965	INTERGENIC
3R	8509013	3R_8509013_SNP [dm3] 3R_12683291_SNP [dm6]	G	A	4.651e^-4	0.965	INTRON kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3794651	2L_3794651_SNP [dm3] 2L_3794651_SNP [dm6]	A	G	4.652e^-4	0.965	SYNONYMOUS_CODING CG3921
2R	4205831	2R_4205831_INS [dm3] 2R_8318326_INS [dm6]	C	CAAC	4.653e^-4	0.965	INTERGENIC
X	21133194	X_21133194_INS [dm3] X_21262167_INS [dm6]	T	TT	4.660e^-4	0.965	INTRON CG32521
X	16925014	X_16925014_SNP [dm3] X_17030981_SNP [dm6]	T	C	4.664e^-4	0.965	INTRON CG45002
3R	18235091	3R_18235091_SNP [dm3] 3R_22409369_SNP [dm6]	C	A	4.665e^-4	0.965	DOWNSTREAM CG13855 INTRON CG13850
3R	27214027	3R_27214027_SNP [dm3] 3R_31388305_SNP [dm6]	A	G	4.671e^-4	0.965	INTRON CG1607	TF binding site mE1_TFBS_cad
X	11930604	X_11930604_SNP [dm3] X_12036571_SNP [dm6]	G	C	4.673e^-4	0.965	INTERGENIC
3R	17202090	3R_17202090_SNP [dm3] 3R_21376368_SNP [dm6]	C	T	4.674e^-4	0.965	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	25846387	3R_25846387_SNP [dm3] 3R_30020665_SNP [dm6]	A	T	4.678e^-4	0.965	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
2R	19167140	2R_19167140_SNP [dm3] 2R_23279617_SNP [dm6]	C	T	4.682e^-4	0.965	INTERGENIC
2R	19168411	2R_19168411_SNP [dm3] 2R_23280888_SNP [dm6]	T	G	4.682e^-4	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8817360	2L_8817360_SNP [dm3] 2L_8817360_SNP [dm6]	C	A	4.686e^-4	0.965	INTERGENIC
3R	16730806	3R_16730806_SNP [dm3] 3R_20905084_SNP [dm6]	T	A	4.686e^-4	0.965	SYNONYMOUS_CODING TotX INTRON CG5621
3R	25690995	3R_25690995_SNP [dm3] 3R_29865273_SNP [dm6]	G	T	4.688e^-4	0.965	UTR_5_PRIME Zip99C
X	6637062	X_6637062_SNP [dm3] X_6743029_SNP [dm6]	T	C	4.693e^-4	0.965	UPSTREAM snoRNA:Psi28S-3436b & 2 others DOWNSTREAM snoRNA:Psi28S-1232 INTRON RpL17	TF binding site BDTNP1_TFBS_twi
3L	11424044	3L_11424044_DEL [dm3] 3L_11430944_DEL [dm6]	TTAAGAAATT	T	4.693e^-4	0.965	INTERGENIC
X	18211982	X_18211982_SNP [dm3] X_18317949_SNP [dm6]	C	T	4.706e^-4	0.965	INTRON CG6023
2L	6211304	2L_6211304_SNP [dm3] 2L_6211304_SNP [dm6]	T	A	4.711e^-4	0.965	DOWNSTREAM CG34380 INTERGENIC
3R	13928351	3R_13928351_SNP [dm3] 3R_18102629_SNP [dm6]	A	C	4.712e^-4	0.965	INTRON sr
2L	9171437	2L_9171437_SNP [dm3] 2L_9171437_SNP [dm6]	C	T	4.715e^-4	0.965	INTRON tai
3L	8907511	3L_8907511_SNP [dm3] 3L_8914411_SNP [dm6]	C	A	4.718e^-4	0.965	UPSTREAM CR43970 INTRON Tsp66E	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7859164	3L_7859164_SNP [dm3] 3L_7866064_SNP [dm6]	C	A	4.718e^-4	0.965	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	11927298	2R_11927298_SNP [dm3] 2R_16039793_SNP [dm6]	C	T	4.727e^-4	0.965	INTRON SP2353	TF binding site mE1_TFBS_cad
3L	11105237	3L_11105237_SNP [dm3] 3L_11112137_SNP [dm6]	G	A	4.728e^-4	0.965	DOWNSTREAM Sod & 1 other INTERGENIC
2R	3918008	2R_3918008_SNP [dm3] 2R_8030503_SNP [dm6]	A	C	4.736e^-4	0.965	UPSTREAM CR43724 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	16270070	3L_16270070_SNP [dm3] 3L_16276970_SNP [dm6]	A	C	4.752e^-4	0.966	UPSTREAM CG13065 INTERGENIC
3L	2360602	3L_2360602_SNP [dm3] 3L_2360602_SNP [dm6]	A	G	4.752e^-4	0.966	NON_SYNONYMOUS_CODING CG13801
X	20759541	X_20759541_SNP [dm3] X_20888514_SNP [dm6]	T	A	4.757e^-4	0.966	INTRON shakB
3L	10507206	3L_10507206_SNP [dm3] 3L_10514106_SNP [dm6]	G	A	4.766e^-4	0.966	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8910037	3L_8910037_SNP [dm3] 3L_8916937_SNP [dm6]	A	G	4.767e^-4	0.966	INTRON Tsp66E
3R	17210402	3R_17210402_SNP [dm3] 3R_21384680_SNP [dm6]	T	C	4.772e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs
2R	18574510	2R_18574510_SNP [dm3] 2R_22687005_SNP [dm6]	T	G	4.775e^-4	0.966	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3093356	2R_3093356_SNP [dm3] 2R_7205851_SNP [dm6]	T	G	4.794e^-4	0.967	INTRON pk
2R	7793524	2R_7793524_SNP [dm3] 2R_11906019_SNP [dm6]	C	G	4.798e^-4	0.967	SYNONYMOUS_CODING CG13183
2L	6317748	2L_6317748_SNP [dm3] 2L_6317748_SNP [dm6]	T	C	4.807e^-4	0.967	INTRON Ddr
X	10212145	X_10212145_SNP [dm3] X_10318112_SNP [dm6]	G	A	4.812e^-4	0.967	INTRON alpha-Man-I
3L	14497312	3L_14497312_INS [dm3] 3L_14504212_INS [dm6]	G	GG	4.819e^-4	0.967	INTRON bbg	transposable element FlyBase
3R	4677592	3R_4677592_SNP [dm3] 3R_8851870_SNP [dm6]	T	C	4.825e^-4	0.967	INTRON pyd
3L	1645340	3L_1645340_SNP [dm3] 3L_1645340_SNP [dm6]	A	G	4.828e^-4	0.967	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18844728	3R_18844728_SNP [dm3] 3R_23019006_SNP [dm6]	A	G	4.832e^-4	0.967	INTERGENIC
X	8275117	X_8275117_SNP [dm3] X_8381084_SNP [dm6]	A	G	4.833e^-4	0.967	INTERGENIC
2L	1254643	2L_1254643_SNP [dm3] 2L_1254643_SNP [dm6]	G	T	4.848e^-4	0.967	INTERGENIC
3L	13926018	3L_13926018_SNP [dm3] 3L_13932918_SNP [dm6]	T	C	4.859e^-4	0.967	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2R	15525688	2R_15525688_SNP [dm3] 2R_19638183_SNP [dm6]	A	C	4.860e^-4	0.967	DOWNSTREAM CG18367 & 2 others INTERGENIC
3R	24194562	3R_24194562_SNP [dm3] 3R_28368840_SNP [dm6]	C	A	4.868e^-4	0.967	INTERGENIC
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	4.888e^-4	0.967	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2845115	3L_2845115_DEL [dm3] 3L_2845115_DEL [dm6]	AGACACACACA...	A	4.899e^-4	0.967	INTRON CG43444	TF binding site mE1_TFBS_Trl
2R	17000336	2R_17000336_SNP [dm3] 2R_21112831_SNP [dm6]	G	A	4.911e^-4	0.967	INTRON ktub
X	16908240	X_16908240_SNP [dm3] X_17014207_SNP [dm6]	C	A	4.920e^-4	0.967	INTRON CG45002
3L	5367039	3L_5367039_SNP [dm3] 3L_5373939_SNP [dm6]	T	A	4.925e^-4	0.967	INTERGENIC
3L	1322131	3L_1322131_SNP [dm3] 3L_1322131_SNP [dm6]	G	A	4.929e^-4	0.967	SYNONYMOUS_CODING CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
3L	2346379	3L_2346379_SNP [dm3] 3L_2346379_SNP [dm6]	G	A	4.930e^-4	0.967	DOWNSTREAM MsR1 INTERGENIC
2L	10786571	2L_10786571_INS [dm3] 2L_10786571_INS [dm6]	T	TTCT	4.934e^-4	0.967	UPSTREAM CR44582 INTRON CG31869
2L	395753	2L_395753_SNP [dm3] 2L_395753_SNP [dm6]	T	G	4.942e^-4	0.967	UPSTREAM CR43718 DOWNSTREAM CG4213 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15428598	3R_15428598_SNP [dm3] 3R_19602876_SNP [dm6]	G	A	4.949e^-4	0.967	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
2R	6865091	2R_6865091_SNP [dm3] 2R_10977586_SNP [dm6]	G	A	4.951e^-4	0.967	DOWNSTREAM luna INTERGENIC
3L	14814768	3L_14814768_SNP [dm3] 3L_14821668_SNP [dm6]	A	T	4.951e^-4	0.967	INTRON CG17839
X	6496145	X_6496145_SNP [dm3] X_6602112_SNP [dm6]	T	C	4.958e^-4	0.967	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5426364	2L_5426364_SNP [dm3] 2L_5426364_SNP [dm6]	G	T	4.959e^-4	0.967	INTERGENIC
X	15466864	X_15466864_SNP [dm3] X_15572831_SNP [dm6]	G	C	4.975e^-4	0.967	SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17489501	2R_17489501_SNP [dm3] 2R_21601996_SNP [dm6]	T	C	4.980e^-4	0.967	INTERGENIC
X	20759542	X_20759542_SNP [dm3] X_20888515_SNP [dm6]	C	A	4.981e^-4	0.967	INTRON shakB
3L	4642611	3L_4642611_SNP [dm3] 3L_4642611_SNP [dm6]	T	C	4.984e^-4	0.967	SYNONYMOUS_CODING axo INTRON axo
3L	7858707	3L_7858707_SNP [dm3] 3L_7865607_SNP [dm6]	C	A	4.985e^-4	0.967	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3L	7000622	3L_7000622_SNP [dm3] 3L_7007522_SNP [dm6]	A	G	4.989e^-4	0.967	INTRON Mp
X	15466522	X_15466522_SNP [dm3] X_15572489_SNP [dm6]	G	A	4.991e^-4	0.967	UPSTREAM CG15643 INTRON CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3163335	2R_3163335_SNP [dm3] 2R_7275830_SNP [dm6]	C	A	4.991e^-4	0.967	NON_SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12141417	3L_12141417_SNP [dm3] 3L_12148317_SNP [dm6]	A	G	4.994e^-4	0.967	UPSTREAM eap INTRON Nrx-IV
3R	7488704	3R_7488704_SNP [dm3] 3R_11662982_SNP [dm6]	A	C	4.994e^-4	0.967	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15699904	3R_15699904_SNP [dm3] 3R_19874182_SNP [dm6]	T	G	4.995e^-4	0.967	INTRON CG4562
X	12190110	X_12190110_SNP [dm3] X_12296077_SNP [dm6]	G	A	5.011e^-4	0.967	INTRON Ten-a
3R	17169062	3R_17169062_SNP [dm3] 3R_21343340_SNP [dm6]	C	T	5.014e^-4	0.967	INTRON CG16791	TF binding site BDTNP1_TFBS_da
3L	5442723	3L_5442723_INS [dm3] 3L_5449623_INS [dm6]	A	AA	5.018e^-4	0.967	INTERGENIC
2L	1021528	2L_1021528_SNP [dm3] 2L_1021528_SNP [dm6]	G	T	5.027e^-4	0.967	INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	19214909	3L_19214909_SNP [dm3] 3L_19221809_SNP [dm6]	G	T	5.027e^-4	0.967	INTRON fz2
3L	12141397	3L_12141397_SNP [dm3] 3L_12148297_SNP [dm6]	A	T	5.030e^-4	0.967	UPSTREAM eap INTRON Nrx-IV
3L	1026733	3L_1026733_SNP [dm3] 3L_1026733_SNP [dm6]	A	G	5.030e^-4	0.967	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17892651	3R_17892651_SNP [dm3] 3R_22066929_SNP [dm6]	T	C	5.031e^-4	0.967	INTRON how
3L	7861027	3L_7861027_SNP [dm3] 3L_7867927_SNP [dm6]	T	G	5.035e^-4	0.967	UPSTREAM Pdp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10403043	3L_10403043_SNP [dm3] 3L_10409943_SNP [dm6]	G	A	5.037e^-4	0.967	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17210433	3R_17210433_SNP [dm3] 3R_21384711_SNP [dm6]	C	G	5.051e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs
X	18213811	X_18213811_SNP [dm3] X_18319778_SNP [dm6]	G	A	5.052e^-4	0.967	INTRON CG6023	transposable element FlyBase
3L	11106358	3L_11106358_SNP [dm3] 3L_11113258_SNP [dm6]	A	G	5.053e^-4	0.967	DOWNSTREAM fd68A INTRON Sod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	23891828	3R_23891828_SNP [dm3] 3R_28066106_SNP [dm6]	T	C	5.062e^-4	0.967	INTRON CG34362
3R	17197859	3R_17197859_SNP [dm3] 3R_21372137_SNP [dm6]	G	A	5.066e^-4	0.967	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	20364785	X_20364785_SNP [dm3] X_20493758_SNP [dm6]	C	T	5.066e^-4	0.967	INTRON RhoGAP19D
X	10911639	X_10911639_SNP [dm3] X_11017606_SNP [dm6]	A	C	5.082e^-4	0.967	INTRON CG42339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12142045	3L_12142045_SNP [dm3] 3L_12148945_SNP [dm6]	T	C	5.083e^-4	0.967	UPSTREAM eap INTRON Nrx-IV
X	18519657	X_18519657_DEL [dm3] X_18625624_DEL [dm6]	CTTGGGAC	C	5.083e^-4	0.967	SPLICE_SITE_REGION wgn INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11142067	2L_11142067_SNP [dm3] 2L_11142067_SNP [dm6]	A	T	5.089e^-4	0.967	INTRON Gyc32E
2L	6396353	2L_6396353_SNP [dm3] 2L_6396353_SNP [dm6]	G	A	5.093e^-4	0.967	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18235848	3R_18235848_SNP [dm3] 3R_22410126_SNP [dm6]	C	G	5.112e^-4	0.967	NON_SYNONYMOUS_CODING CG13850	TF binding site mE1_TFBS_sens
3L	2841115	3L_2841115_SNP [dm3] 3L_2841115_SNP [dm6]	A	T	5.120e^-4	0.967	INTRON CG43444
3L	7858808	3L_7858808_SNP [dm3] 3L_7865708_SNP [dm6]	C	G	5.125e^-4	0.967	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	18429261	X_18429261_SNP [dm3] X_18535228_SNP [dm6]	C	T	5.126e^-4	0.967	UTR_5_PRIME Bx INTRON Bx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15465969	X_15465969_SNP [dm3] X_15571936_SNP [dm6]	A	G	5.132e^-4	0.967	UTR_5_PRIME CG15643 DOWNSTREAM CG9213	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	15465983	X_15465983_SNP [dm3] X_15571950_SNP [dm6]	A	G	5.132e^-4	0.967	UTR_5_PRIME CG15643 DOWNSTREAM CG9213	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12252639	3L_12252639_SNP [dm3] 3L_12259539_SNP [dm6]	T	G	5.145e^-4	0.967	INTRON app
3L	1646778	3L_1646778_SNP [dm3] 3L_1646778_SNP [dm6]	T	G	5.157e^-4	0.967	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11820806	3L_11820806_SNP [dm3] 3L_11827706_SNP [dm6]	G	T	5.169e^-4	0.967	NON_SYNONYMOUS_CODING CycA
2R	16873216	2R_16873216_SNP [dm3] 2R_20985711_SNP [dm6]	G	A	5.171e^-4	0.967	SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6628577	2L_6628577_SNP [dm3] 2L_6628577_SNP [dm6]	A	G	5.175e^-4	0.967	SYNONYMOUS_CODING Oatp26F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16513840	2R_16513840_SNP [dm3] 2R_20626335_SNP [dm6]	A	G	5.177e^-4	0.967	SYNONYMOUS_CODING CG16742
3L	4173664	3L_4173664_SNP [dm3] 3L_4173664_SNP [dm6]	G	A	5.180e^-4	0.967	UTR_3_PRIME Ero1L UPSTREAM CG18675	TF binding site mE1_TFBS_sens
3R	8504738	3R_8504738_SNP [dm3] 3R_12679016_SNP [dm6]	T	C	5.186e^-4	0.967	UTR_5_PRIME mbo DOWNSTREAM Cyp313a4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad

By genomic position
Variant impact
Gene name

W2 Vial 4 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results