DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.490e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

510 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	3766135	2R_3766135_SNP [dm3] 2R_7878630_SNP [dm6]	C	A	2.537e^-5	0.868	INTRON Dgk
2R	5289894	2R_5289894_SNP [dm3] 2R_9402389_SNP [dm6]	C	T	2.537e^-5	0.868	INTRON wun	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	12260779	2L_12260779_SNP [dm3] 2L_12260779_SNP [dm6]	T	C	2.754e^-5	0.868	INTRON aret
2L	12260801	2L_12260801_DEL [dm3] 2L_12260801_DEL [dm6]	ACTTTCCA	A	2.754e^-5	0.868	INTRON aret
2L	12260853	2L_12260853_SNP [dm3] 2L_12260853_SNP [dm6]	A	T	2.754e^-5	0.868	INTRON aret
2L	12260866	2L_12260866_SNP [dm3] 2L_12260866_SNP [dm6]	T	A	2.754e^-5	0.868	INTRON aret
2R	3771872	2R_3771872_SNP [dm3] 2R_7884367_SNP [dm6]	G	A	3.488e^-5	0.868	INTRON Dgk
2L	12260810	2L_12260810_SNP [dm3] 2L_12260810_SNP [dm6]	C	G	4.389e^-5	0.868	INTRON aret
2R	2958232	2R_2958232_DEL [dm3] 2R_7070727_DEL [dm6]	AA	A	7.429e^-5	0.868	UTR_3_PRIME CG12831 UPSTREAM tRNA:CR30298 DOWNSTREAM tRNA:CR30299 & 1 other
X	6090968	X_6090968_SNP [dm3] X_6196935_SNP [dm6]	C	T	8.006e^-5	0.868	NON_SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
2L	19914150	2L_19914150_SNP [dm3] 2L_19914150_SNP [dm6]	C	T	9.005e^-5	0.868	UPSTREAM Victoria INTRON sick
2L	8000439	2L_8000439_SNP [dm3] 2L_8000439_SNP [dm6]	T	A	9.005e^-5	0.868	SPLICE_SITE_REGION Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6110370	3L_6110370_SNP [dm3] 3L_6117270_SNP [dm6]	G	A	9.285e^-5	0.868	INTRON Ets65A
2L	19914141	2L_19914141_SNP [dm3] 2L_19914141_SNP [dm6]	A	C	9.815e^-5	0.868	UPSTREAM Victoria INTRON sick
2L	19878723	2L_19878723_SNP [dm3] 2L_19878723_SNP [dm6]	T	G	1.024e^-4	0.868	INTRON sick
2R	3006922	2R_3006922_SNP [dm3] 2R_7119417_SNP [dm6]	G	T	1.025e^-4	0.868	INTRON esn
2R	4956040	2R_4956040_SNP [dm3] 2R_9068535_SNP [dm6]	G	T	1.025e^-4	0.868	UPSTREAM ana INTRON ana
3L	11458536	3L_11458536_INS [dm3] 3L_11465436_INS [dm6]	T	TT	1.108e^-4	0.868	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	19019165	2L_19019165_SNP [dm3] 2L_19019165_SNP [dm6]	A	C	1.145e^-4	0.868	DOWNSTREAM CR44184 INTERGENIC
2L	19019177	2L_19019177_SNP [dm3] 2L_19019177_SNP [dm6]	T	G	1.145e^-4	0.868	DOWNSTREAM CR44184 INTERGENIC
2L	19019180	2L_19019180_SNP [dm3] 2L_19019180_SNP [dm6]	C	A	1.145e^-4	0.868	DOWNSTREAM CR44184 INTERGENIC
2L	19685598	2L_19685598_SNP [dm3] 2L_19685598_SNP [dm6]	A	T	1.145e^-4	0.868	INTRON Lar	TF binding site BDTNP1_TFBS_Med
2R	3519173	2R_3519173_SNP [dm3] 2R_7631668_SNP [dm6]	T	C	1.297e^-4	0.868	INTRON CG43340 EXON CR45131	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cnc
X	17073108	X_17073108_SNP [dm3] X_17179075_SNP [dm6]	T	C	1.300e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19901020	2R_19901020_SNP [dm3] 2R_24013497_SNP [dm6]	T	C	1.305e^-4	0.868	INTRON Unc-89
3L	5123281	3L_5123281_SNP [dm3] 3L_5130181_SNP [dm6]	A	G	1.305e^-4	0.868	NON_SYNONYMOUS_CODING CG4597
2L	20331779	2L_20331779_SNP [dm3] 2L_20331779_SNP [dm6]	T	C	1.447e^-4	0.868	INTRON spir
3R	16252124	3R_16252124_SNP [dm3] 3R_20426402_SNP [dm6]	G	A	1.492e^-4	0.868	INTRON Gfrl
3R	16252166	3R_16252166_SNP [dm3] 3R_20426444_SNP [dm6]	A	T	1.492e^-4	0.868	INTRON Gfrl
3R	16252434	3R_16252434_SNP [dm3] 3R_20426712_SNP [dm6]	G	A	1.492e^-4	0.868	INTRON Gfrl
2R	8245338	2R_8245338_SNP [dm3] 2R_12357833_SNP [dm6]	C	T	1.570e^-4	0.868	SYNONYMOUS_CODING CG30049
2R	18397773	2R_18397773_SNP [dm3] 2R_22510268_SNP [dm6]	T	G	1.605e^-4	0.868	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	18551246	2R_18551246_SNP [dm3] 2R_22663741_SNP [dm6]	T	A	1.608e^-4	0.868	UTR_5_PRIME CG4250 DOWNSTREAM CG42566
2R	18551247	2R_18551247_SNP [dm3] 2R_22663742_SNP [dm6]	A	T	1.608e^-4	0.868	START_GAINED CG4250 UTR_5_PRIME CG4250 DOWNSTREAM CG42566
2R	7548726	2R_7548726_SNP [dm3] 2R_11661221_SNP [dm6]	C	T	1.608e^-4	0.868	UPSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_dl
X	14635549	X_14635549_DEL [dm3] X_14741516_DEL [dm6]	GTG	G	1.618e^-4	0.868	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2R	12224235	2R_12224235_SNP [dm3] 2R_16336730_SNP [dm6]	C	A	1.655e^-4	0.868	UTR_5_PRIME Hmgs UPSTREAM Hmgs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12224282	2R_12224282_SNP [dm3] 2R_16336777_SNP [dm6]	A	G	1.655e^-4	0.868	START_GAINED Hmgs UTR_5_PRIME Hmgs UPSTREAM Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12224309	2R_12224309_SNP [dm3] 2R_16336804_SNP [dm6]	T	A	1.655e^-4	0.868	UTR_5_PRIME Hmgs UPSTREAM Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14099070	2R_14099070_SNP [dm3] 2R_18211565_SNP [dm6]	T	C	1.655e^-4	0.868	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	14099073	2R_14099073_SNP [dm3] 2R_18211568_SNP [dm6]	T	C	1.655e^-4	0.868	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	14099084	2R_14099084_SNP [dm3] 2R_18211579_SNP [dm6]	G	A	1.655e^-4	0.868	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	14099134	2R_14099134_SNP [dm3] 2R_18211629_SNP [dm6]	T	A	1.655e^-4	0.868	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	14099185	2R_14099185_SNP [dm3] 2R_18211680_SNP [dm6]	T	C	1.655e^-4	0.868	DOWNSTREAM CR45147 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17643407	2R_17643407_DEL [dm3] 2R_21755902_DEL [dm6]	GGTTCTTCAGCAATAATT...	G	1.655e^-4	0.868	INTERGENIC
2R	4729629	2R_4729629_SNP [dm3] 2R_8842124_SNP [dm6]	G	A	1.655e^-4	0.868	INTRON sns
3L	14173946	3L_14173946_SNP [dm3] 3L_14180846_SNP [dm6]	T	A	1.655e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	2503881	3L_2503881_SNP [dm3] 3L_2503881_SNP [dm6]	G	T	1.655e^-4	0.868	UPSTREAM CG16758 EXON CR45425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2665843	3L_2665843_SNP [dm3] 3L_2665843_SNP [dm6]	T	C	1.655e^-4	0.868	INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	10497912	3R_10497912_SNP [dm3] 3R_14672190_SNP [dm6]	C	T	1.655e^-4	0.868	INTRON Meltrin	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14880310	3R_14880310_SNP [dm3] 3R_19054588_SNP [dm6]	T	C	1.655e^-4	0.868	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5045687	3R_5045687_SNP [dm3] 3R_9219965_SNP [dm6]	A	T	1.655e^-4	0.868	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	10650403	X_10650403_SNP [dm3] X_10756370_SNP [dm6]	G	A	1.655e^-4	0.868	INTRON Rph	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2840745	X_2840745_SNP [dm3] X_2946712_SNP [dm6]	T	A	1.655e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840760	X_2840760_SNP [dm3] X_2946727_SNP [dm6]	G	A	1.655e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840773	X_2840773_SNP [dm3] X_2946740_SNP [dm6]	G	T	1.655e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840774	X_2840774_SNP [dm3] X_2946741_SNP [dm6]	A	T	1.655e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840835	X_2840835_SNP [dm3] X_2946802_SNP [dm6]	G	T	1.655e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	8085559	X_8085559_SNP [dm3] X_8191526_SNP [dm6]	G	C	1.655e^-4	0.868	INTRON sdt	TF binding site mE1_TFBS_bab1
2L	1190156	2L_1190156_SNP [dm3] 2L_1190156_SNP [dm6]	C	T	1.759e^-4	0.868	INTRON CG5001
2R	12997538	2R_12997538_SNP [dm3] 2R_17110033_SNP [dm6]	C	T	1.794e^-4	0.868	SYNONYMOUS_CODING CG15611 INTRON CG15611
2R	16106217	2R_16106217_SNP [dm3] 2R_20218712_SNP [dm6]	G	T	1.794e^-4	0.868	INTERGENIC
2R	17261934	2R_17261934_SNP [dm3] 2R_21374429_SNP [dm6]	C	T	1.794e^-4	0.868	INTRON cv-2
2R	18397857	2R_18397857_SNP [dm3] 2R_22510352_SNP [dm6]	T	C	1.794e^-4	0.868	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	18398296	2R_18398296_SNP [dm3] 2R_22510791_SNP [dm6]	A	G	1.794e^-4	0.868	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	18398355	2R_18398355_SNP [dm3] 2R_22510850_SNP [dm6]	A	G	1.794e^-4	0.868	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	19949613	2L_19949613_SNP [dm3] 2L_19949613_SNP [dm6]	G	A	1.851e^-4	0.868	INTRON sick	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	13293542	3R_13293542_SNP [dm3] 3R_17467820_SNP [dm6]	G	A	1.863e^-4	0.868	INTERGENIC
2R	4955979	2R_4955979_SNP [dm3] 2R_9068474_SNP [dm6]	A	G	1.871e^-4	0.868	UPSTREAM ana INTRON ana
X	9207266	X_9207266_SNP [dm3] X_9313233_SNP [dm6]	C	T	1.913e^-4	0.868	INTERGENIC
X	14066751	X_14066751_SNP [dm3] X_14172718_SNP [dm6]	A	G	1.955e^-4	0.868	UPSTREAM betaNACtes1 INTERGENIC
3R	11310580	3R_11310580_SNP [dm3] 3R_15484858_SNP [dm6]	T	C	1.955e^-4	0.868	UTR_3_PRIME Trissin DOWNSTREAM Trissin & 1 other
3R	7466032	3R_7466032_SNP [dm3] 3R_11640310_SNP [dm6]	G	A	1.955e^-4	0.868	INTRON Csk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12260876	2L_12260876_DEL [dm3] 2L_12260876_DEL [dm6]	GCGCCA	G	1.958e^-4	0.868	INTRON aret
2R	4956227	2R_4956227_SNP [dm3] 2R_9068722_SNP [dm6]	T	A	1.966e^-4	0.868	UPSTREAM ana INTRON ana
2R	4956243	2R_4956243_SNP [dm3] 2R_9068738_SNP [dm6]	T	C	1.966e^-4	0.868	UPSTREAM ana INTRON ana
3R	11819017	3R_11819017_SNP [dm3] 3R_15993295_SNP [dm6]	G	A	1.966e^-4	0.868	UTR_5_PRIME srp UPSTREAM srp EXON CR44133	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	11819324	3R_11819324_SNP [dm3] 3R_15993602_SNP [dm6]	T	A	1.966e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819325	3R_11819325_DEL [dm3] 3R_15993603_DEL [dm6]	ATGTGTATTTAAT...	A	1.966e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819341	3R_11819341_SNP [dm3] 3R_15993619_SNP [dm6]	T	A	1.966e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819343	3R_11819343_DEL [dm3] 3R_15993621_DEL [dm6]	TTTA	T	1.966e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819805	3R_11819805_SNP [dm3] 3R_15994083_SNP [dm6]	C	T	1.966e^-4	0.868	UPSTREAM srp DOWNSTREAM CR44133 INTRON srp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12260870	2L_12260870_SNP [dm3] 2L_12260870_SNP [dm6]	T	G	2.026e^-4	0.868	INTRON aret
3R	14199351	3R_14199351_SNP [dm3] 3R_18373629_SNP [dm6]	T	A	2.065e^-4	0.868	UPSTREAM gl & 1 other DOWNSTREAM CG14310 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5301853	X_5301853_SNP [dm3] X_5407820_SNP [dm6]	C	T	2.105e^-4	0.868	SYNONYMOUS_CODING NAAT1	TF binding site BDTNP1_TFBS_twi
2L	16488589	2L_16488589_SNP [dm3] 2L_16488589_SNP [dm6]	A	G	2.199e^-4	0.868	SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv
2L	16488622	2L_16488622_SNP [dm3] 2L_16488622_SNP [dm6]	G	A	2.199e^-4	0.868	SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv
X	4244729	X_4244729_SNP [dm3] X_4350696_SNP [dm6]	T	G	2.229e^-4	0.868	INTRON norpA
2L	21813316	2L_21813316_DEL [dm3] 2L_21813316_DEL [dm6]	ATGATTAAGTCGATGAA...	A	2.229e^-4	0.868	INTERGENIC
2R	5849012	2R_5849012_SNP [dm3] 2R_9961507_SNP [dm6]	T	G	2.239e^-4	0.868	INTRON Pal1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7812006	3R_7812006_SNP [dm3] 3R_11986284_SNP [dm6]	A	G	2.245e^-4	0.868	INTRON mfas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20310913	2L_20310913_DEL [dm3] 2L_20310913_DEL [dm6]	TT	T	2.264e^-4	0.868	UPSTREAM spir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10077936	3R_10077936_DEL [dm3] 3R_14252214_DEL [dm6]	ATT	GA	2.342e^-4	0.868	INTRON Aats-met
3R	10077940	3R_10077940_SNP [dm3] 3R_14252218_SNP [dm6]	A	T	2.342e^-4	0.868	INTRON Aats-met
3R	18799823	3R_18799823_SNP [dm3] 3R_22974101_SNP [dm6]	C	A	2.342e^-4	0.868	INTERGENIC
3R	18799828	3R_18799828_SNP [dm3] 3R_22974106_SNP [dm6]	T	C	2.342e^-4	0.868	INTERGENIC
3R	18799834	3R_18799834_SNP [dm3] 3R_22974112_SNP [dm6]	C	G	2.342e^-4	0.868	INTERGENIC
3R	18799851	3R_18799851_SNP [dm3] 3R_22974129_SNP [dm6]	A	G	2.342e^-4	0.868	INTERGENIC
X	16283217	X_16283217_SNP [dm3] X_16389184_SNP [dm6]	G	T	2.406e^-4	0.868	UTR_3_PRIME TH1 DOWNSTREAM CG4239
2L	13630308	2L_13630308_SNP [dm3] 2L_13630308_SNP [dm6]	C	G	2.417e^-4	0.868	INTRON kuz
2L	5652592	2L_5652592_SNP [dm3] 2L_5652592_SNP [dm6]	C	T	2.482e^-4	0.868	INTRON CG31646
2L	7764691	2L_7764691_SNP [dm3] 2L_7764691_SNP [dm6]	G	A	2.496e^-4	0.868	SPLICE_SITE_REGION CG7196 INTRON CG7196
2L	3973467	2L_3973467_SNP [dm3] 2L_3973467_SNP [dm6]	A	G	2.506e^-4	0.868	INTRON fred
3L	12498233	3L_12498233_SNP [dm3] 3L_12505133_SNP [dm6]	G	A	2.539e^-4	0.868	SYNONYMOUS_CODING vih DOWNSTREAM CG10654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12498236	3L_12498236_SNP [dm3] 3L_12505136_SNP [dm6]	C	T	2.539e^-4	0.868	SYNONYMOUS_CODING vih DOWNSTREAM CG10654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	22877101	3L_22877101_SNP [dm3] 3L_22884001_SNP [dm6]	G	C	2.614e^-4	0.868	INTRON slif
3R	15920105	3R_15920105_SNP [dm3] 3R_20094383_SNP [dm6]	G	A	2.614e^-4	0.868	INTERGENIC
3R	15920108	3R_15920108_SNP [dm3] 3R_20094386_SNP [dm6]	C	G	2.614e^-4	0.868	INTERGENIC
3R	15920213	3R_15920213_SNP [dm3] 3R_20094491_SNP [dm6]	G	A	2.614e^-4	0.868	INTERGENIC
3R	15920245	3R_15920245_SNP [dm3] 3R_20094523_SNP [dm6]	A	G	2.614e^-4	0.868	INTERGENIC
X	10000179	X_10000179_SNP [dm3] X_10106146_SNP [dm6]	G	C	2.663e^-4	0.868	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20931629	X_20931629_SNP [dm3] X_21060602_SNP [dm6]	C	T	2.663e^-4	0.868	UTR_5_PRIME bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run
2R	12224496	2R_12224496_SNP [dm3] 2R_16336991_SNP [dm6]	T	A	2.694e^-4	0.868	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18551253	2R_18551253_SNP [dm3] 2R_22663748_SNP [dm6]	G	C	2.694e^-4	0.868	NON_SYNONYMOUS_CODING CG4250 DOWNSTREAM CG42566
2R	18551255	2R_18551255_SNP [dm3] 2R_22663750_SNP [dm6]	G	T	2.694e^-4	0.868	NON_SYNONYMOUS_CODING CG4250 DOWNSTREAM CG42566
2R	18551257	2R_18551257_DEL [dm3] 2R_22663752_DEL [dm6]	AGAACTTTCAATACGAGA...	T	2.694e^-4	0.868	DOWNSTREAM CG42566
3L	2503884	3L_2503884_SNP [dm3] 3L_2503884_SNP [dm6]	A	G	2.694e^-4	0.868	UPSTREAM CG16758 EXON CR45425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4971726	3L_4971726_SNP [dm3] 3L_4971726_SNP [dm6]	G	T	2.694e^-4	0.868	INTRON Con
X	17028127	X_17028127_SNP [dm3] X_17134094_SNP [dm6]	T	C	2.705e^-4	0.868	INTRON CG5004
2R	17115693	2R_17115693_SNP [dm3] 2R_21228188_SNP [dm6]	T	C	2.755e^-4	0.868	INTRON ASPP
2L	645508	2L_645508_SNP [dm3] 2L_645508_SNP [dm6]	G	T	2.765e^-4	0.868	NON_SYNONYMOUS_CODING ds
2L	659689	2L_659689_SNP [dm3] 2L_659689_SNP [dm6]	C	A	2.765e^-4	0.868	INTRON ds
3L	2092151	3L_2092151_SNP [dm3] 3L_2092151_SNP [dm6]	T	C	2.947e^-4	0.868	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2092193	3L_2092193_SNP [dm3] 3L_2092193_SNP [dm6]	T	C	2.947e^-4	0.868	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13465176	3R_13465176_SNP [dm3] 3R_17639454_SNP [dm6]	A	G	2.947e^-4	0.868	INTRON CG43175 EXON CR45222
3R	18815672	3R_18815672_SNP [dm3] 3R_22989950_SNP [dm6]	C	T	2.947e^-4	0.868	NON_SYNONYMOUS_CODING Or94b INTRON Nha2	TF binding site mE1_TFBS_cad
X	17184149	X_17184149_DEL [dm3] X_17290116_DEL [dm6]	CGTGTAATAATGTATTATAA...	C	2.947e^-4	0.868	INTRON CG5445 & 1 other
X	5301727	X_5301727_INS [dm3] X_5407694_INS [dm6]	T	TA	2.980e^-4	0.868	SPLICE_SITE_REGION NAAT1 INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	11633751	2L_11633751_SNP [dm3] 2L_11633751_SNP [dm6]	C	T	2.992e^-4	0.868	INTERGENIC
2L	1957195	2L_1957195_SNP [dm3] 2L_1957195_SNP [dm6]	C	G	3.049e^-4	0.868	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14108953	3L_14108953_SNP [dm3] 3L_14115853_SNP [dm6]	C	T	3.058e^-4	0.868	INTRON Sox21b
3L	14108963	3L_14108963_SNP [dm3] 3L_14115863_SNP [dm6]	T	C	3.058e^-4	0.868	INTRON Sox21b
3L	12488618	3L_12488618_SNP [dm3] 3L_12495518_SNP [dm6]	A	C	3.071e^-4	0.868	INTRON CG10657	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	12628603	3L_12628603_SNP [dm3] 3L_12635503_SNP [dm6]	G	A	3.071e^-4	0.868	INTRON CR32111	TF binding site mE1_TFBS_HSA
X	17028063	X_17028063_SNP [dm3] X_17134030_SNP [dm6]	C	T	3.071e^-4	0.868	INTRON CG5004
2R	17961440	2R_17961440_SNP [dm3] 2R_22073935_SNP [dm6]	A	C	3.083e^-4	0.868	UPSTREAM CG11474 INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5650919	X_5650919_SNP [dm3] X_5756886_SNP [dm6]	T	G	3.086e^-4	0.868	UPSTREAM CR45528 INTRON CG15771	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2R	3771282	2R_3771282_SNP [dm3] 2R_7883777_SNP [dm6]	C	T	3.104e^-4	0.868	INTRON Dgk
2L	11633663	2L_11633663_SNP [dm3] 2L_11633663_SNP [dm6]	C	G	3.262e^-4	0.868	INTERGENIC
2L	11633666	2L_11633666_SNP [dm3] 2L_11633666_SNP [dm6]	C	A	3.262e^-4	0.868	INTERGENIC
2R	16188462	2R_16188462_SNP [dm3] 2R_20300957_SNP [dm6]	A	T	3.266e^-4	0.868	INTERGENIC
2R	16188774	2R_16188774_SNP [dm3] 2R_20301269_SNP [dm6]	A	C	3.266e^-4	0.868	UPSTREAM CR44640 INTERGENIC
2R	16188835	2R_16188835_SNP [dm3] 2R_20301330_SNP [dm6]	A	G	3.266e^-4	0.868	UPSTREAM CR44640 INTERGENIC
2R	17261925	2R_17261925_SNP [dm3] 2R_21374420_SNP [dm6]	A	G	3.266e^-4	0.868	INTRON cv-2
3L	3195509	3L_3195509_SNP [dm3] 3L_3195509_SNP [dm6]	C	T	3.271e^-4	0.868	SYNONYMOUS_CODING Hsp83	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	17212027	2L_17212027_SNP [dm3] 2L_17212027_SNP [dm6]	T	C	3.296e^-4	0.868	INTRON beat-IIIc
3L	7210471	3L_7210471_SNP [dm3] 3L_7217371_SNP [dm6]	A	C	3.441e^-4	0.868	INTERGENIC
3L	18309888	3L_18309888_SNP [dm3] 3L_18316788_SNP [dm6]	T	A	3.445e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3529346	2R_3529346_SNP [dm3] 2R_7641841_SNP [dm6]	A	C	3.455e^-4	0.868	SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
3R	18799776	3R_18799776_SNP [dm3] 3R_22974054_SNP [dm6]	G	A	3.520e^-4	0.868	INTERGENIC
3R	18799783	3R_18799783_SNP [dm3] 3R_22974061_SNP [dm6]	G	A	3.520e^-4	0.868	INTERGENIC
3R	18799788	3R_18799788_SNP [dm3] 3R_22974066_SNP [dm6]	C	T	3.520e^-4	0.868	INTERGENIC
3R	18799803	3R_18799803_SNP [dm3] 3R_22974081_SNP [dm6]	G	A	3.520e^-4	0.868	INTERGENIC
3R	18799815	3R_18799815_SNP [dm3] 3R_22974093_SNP [dm6]	A	G	3.520e^-4	0.868	INTERGENIC
3R	18814261	3R_18814261_SNP [dm3] 3R_22988539_SNP [dm6]	C	A	3.520e^-4	0.868	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
3R	18814275	3R_18814275_SNP [dm3] 3R_22988553_SNP [dm6]	C	A	3.520e^-4	0.868	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
3R	26449850	3R_26449850_SNP [dm3] 3R_30624128_SNP [dm6]	A	G	3.520e^-4	0.868	DOWNSTREAM CR44136 INTERGENIC
3R	26449955	3R_26449955_INS [dm3] 3R_30624233_INS [dm6]	A	AA	3.520e^-4	0.868	DOWNSTREAM CR44136 INTERGENIC
3R	26449989	3R_26449989_SNP [dm3] 3R_30624267_SNP [dm6]	G	T	3.520e^-4	0.868	DOWNSTREAM CR44136 INTERGENIC
3R	7053563	3R_7053563_SNP [dm3] 3R_11227841_SNP [dm6]	A	G	3.576e^-4	0.868	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	16252615	3R_16252615_SNP [dm3] 3R_20426893_SNP [dm6]	T	C	3.632e^-4	0.868	INTRON Gfrl
3L	19445631	3L_19445631_SNP [dm3] 3L_19452531_SNP [dm6]	T	C	3.633e^-4	0.868	INTERGENIC
2L	11647832	2L_11647832_SNP [dm3] 2L_11647832_SNP [dm6]	G	A	3.651e^-4	0.868	SYNONYMOUS_CODING CG6614	TF binding site mE1_TFBS_sens
3R	7053593	3R_7053593_SNP [dm3] 3R_11227871_SNP [dm6]	A	C	3.658e^-4	0.868	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	17073062	X_17073062_SNP [dm3] X_17179029_SNP [dm6]	T	A	3.673e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7781283	2L_7781283_SNP [dm3] 2L_7781283_SNP [dm6]	T	C	3.680e^-4	0.868	UTR_3_PRIME Uro UPSTREAM CG7164
2R	3614372	2R_3614372_SNP [dm3] 2R_7726867_SNP [dm6]	A	T	3.698e^-4	0.868	UPSTREAM CG18812 INTRON CG18812
2R	4939994	2R_4939994_SNP [dm3] 2R_9052489_SNP [dm6]	T	A	3.769e^-4	0.868	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13665641	2L_13665641_SNP [dm3] 2L_13665641_SNP [dm6]	C	T	3.822e^-4	0.868	UTR_5_PRIME CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8759316	2L_8759316_SNP [dm3] 2L_8759316_SNP [dm6]	A	G	3.822e^-4	0.868	INTERGENIC
3L	15218174	3L_15218174_SNP [dm3] 3L_15225074_SNP [dm6]	C	T	3.822e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	22583989	3R_22583989_SNP [dm3] 3R_26758267_SNP [dm6]	A	G	3.844e^-4	0.868	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24295863	3R_24295863_DEL [dm3] 3R_28470141_DEL [dm6]	TTGAGT	T	3.874e^-4	0.868	INTRON beat-VI	TF binding site mE1_TFBS_inv
2L	19019437	2L_19019437_SNP [dm3] 2L_19019437_SNP [dm6]	G	A	3.882e^-4	0.868	EXON CR44184
2L	7200118	2L_7200118_DEL [dm3] 2L_7200118_DEL [dm6]	AA	A	3.882e^-4	0.868	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
2R	4725971	2R_4725971_SNP [dm3] 2R_8838466_SNP [dm6]	T	A	3.933e^-4	0.868	INTRON sns	TF binding site mE1_TFBS_chinmo
2R	12254473	2R_12254473_SNP [dm3] 2R_16366968_SNP [dm6]	G	T	4.001e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16359733	2R_16359733_SNP [dm3] 2R_20472228_SNP [dm6]	T	C	4.109e^-4	0.868	SYNONYMOUS_CODING CG12484
2L	11372106	2L_11372106_SNP [dm3] 2L_11372106_SNP [dm6]	C	T	4.173e^-4	0.868	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11372121	2L_11372121_SNP [dm3] 2L_11372121_SNP [dm6]	A	C	4.173e^-4	0.868	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13642439	3R_13642439_SNP [dm3] 3R_17816717_SNP [dm6]	C	T	4.202e^-4	0.868	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20312944	2L_20312944_SNP [dm3] 2L_20312944_SNP [dm6]	A	G	4.228e^-4	0.868	INTRON spir
2R	3766111	2R_3766111_SNP [dm3] 2R_7878606_SNP [dm6]	T	C	4.264e^-4	0.868	INTRON Dgk
2R	4967685	2R_4967685_SNP [dm3] 2R_9080180_SNP [dm6]	A	C	4.277e^-4	0.868	INTRON CG8083
2R	4928900	2R_4928900_SNP [dm3] 2R_9041395_SNP [dm6]	A	G	4.298e^-4	0.868	SYNONYMOUS_CODING Ance-4 DOWNSTREAM PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4927589	2R_4927589_SNP [dm3] 2R_9040084_SNP [dm6]	C	A	4.310e^-4	0.868	INTRON Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	4927743	2R_4927743_SNP [dm3] 2R_9040238_SNP [dm6]	T	C	4.310e^-4	0.868	INTRON Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3473152	3L_3473152_SNP [dm3] 3L_3473152_SNP [dm6]	G	A	4.382e^-4	0.868	INTRON CG42324
2L	2560405	2L_2560405_INS [dm3] 2L_2560405_INS [dm6]	A	AC	4.445e^-4	0.868	INTERGENIC
3R	15920111	3R_15920111_SNP [dm3] 3R_20094389_SNP [dm6]	C	A	4.476e^-4	0.868	INTERGENIC
3R	15920276	3R_15920276_SNP [dm3] 3R_20094554_SNP [dm6]	C	T	4.476e^-4	0.868	INTERGENIC
2R	4192708	2R_4192708_SNP [dm3] 2R_8305203_SNP [dm6]	G	C	4.478e^-4	0.868	DOWNSTREAM CR44447 INTERGENIC
2L	10025454	2L_10025454_SNP [dm3] 2L_10025454_SNP [dm6]	A	G	4.525e^-4	0.868	INTERGENIC
3L	4856375	3L_4856375_SNP [dm3] 3L_4856375_SNP [dm6]	C	T	4.529e^-4	0.868	INTERGENIC
2L	11706965	2L_11706965_SNP [dm3] 2L_11706965_SNP [dm6]	T	C	4.671e^-4	0.868	INTERGENIC
2L	7812567	2L_7812567_SNP [dm3] 2L_7812567_SNP [dm6]	C	T	4.671e^-4	0.868	INTRON LanB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7812580	2L_7812580_DEL [dm3] 2L_7812580_DEL [dm6]	ACTA	G	4.671e^-4	0.868	INTRON LanB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7812600	2L_7812600_SNP [dm3] 2L_7812600_SNP [dm6]	T	A	4.671e^-4	0.868	INTRON LanB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7812621	2L_7812621_SNP [dm3] 2L_7812621_SNP [dm6]	T	A	4.671e^-4	0.868	INTRON LanB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12602932	2R_12602932_SNP [dm3] 2R_16715427_SNP [dm6]	A	T	4.685e^-4	0.868	INTRON CG30463
2R	13009348	2R_13009348_SNP [dm3] 2R_17121843_SNP [dm6]	T	G	4.685e^-4	0.868	EXON CR45272
3L	4377211	3L_4377211_SNP [dm3] 3L_4377211_SNP [dm6]	C	A	4.685e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	4377294	3L_4377294_SNP [dm3] 3L_4377294_SNP [dm6]	G	A	4.685e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
X	8544350	X_8544350_SNP [dm3] X_8650317_SNP [dm6]	C	G	4.685e^-4	0.868	UTR_5_PRIME oc INTRON oc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14412871	2L_14412871_SNP [dm3] 2L_14412871_SNP [dm6]	A	T	4.698e^-4	0.868	INTERGENIC
2L	10255619	2L_10255619_SNP [dm3] 2L_10255619_SNP [dm6]	C	T	4.717e^-4	0.868	DOWNSTREAM Ror & 1 other INTRON CG5676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	16136300	2L_16136300_SNP [dm3] 2L_16136300_SNP [dm6]	C	G	4.717e^-4	0.868	UPSTREAM CR44871 INTERGENIC
2L	7198936	2L_7198936_INS [dm3] 2L_7198936_INS [dm6]	C	CC	4.717e^-4	0.868	INTRON CG4502
3L	17618476	3L_17618476_SNP [dm3] 3L_17625376_SNP [dm6]	G	A	4.750e^-4	0.868	INTRON CG7510	TF binding site mE1_TFBS_inv
2R	11817921	2R_11817921_SNP [dm3] 2R_15930416_SNP [dm6]	A	C	4.850e^-4	0.868	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	11818023	2R_11818023_SNP [dm3] 2R_15930518_SNP [dm6]	T	A	4.850e^-4	0.868	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	16740002	2R_16740002_SNP [dm3] 2R_20852497_SNP [dm6]	C	T	4.887e^-4	0.868	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13673608	3R_13673608_SNP [dm3] 3R_17847886_SNP [dm6]	C	T	4.889e^-4	0.868	INTRON tinc
2R	12862704	2R_12862704_SNP [dm3] 2R_16975199_SNP [dm6]	T	G	4.971e^-4	0.868	INTRON Cbp53E
2R	12862712	2R_12862712_SNP [dm3] 2R_16975207_SNP [dm6]	T	C	4.971e^-4	0.868	INTRON Cbp53E
2R	12862727	2R_12862727_SNP [dm3] 2R_16975222_SNP [dm6]	C	G	4.971e^-4	0.868	INTRON Cbp53E
X	634139	X_634139_INS [dm3] X_740106_INS [dm6]	A	AAA	5.105e^-4	0.868	INTRON sdk
3L	14108711	3L_14108711_SNP [dm3] 3L_14115611_SNP [dm6]	G	A	5.188e^-4	0.868	INTRON Sox21b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19126397	2R_19126397_SNP [dm3] 2R_23238874_SNP [dm6]	G	A	5.238e^-4	0.868	INTERGENIC
X	19092385	X_19092385_SNP [dm3] X_19198352_SNP [dm6]	T	C	5.280e^-4	0.868	SYNONYMOUS_CODING CG7990 UTR_3_PRIME CG7990 DOWNSTREAM CG7990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19092677	X_19092677_SNP [dm3] X_19198644_SNP [dm6]	C	T	5.280e^-4	0.868	SYNONYMOUS_CODING CG7990 UTR_3_PRIME CG7990 DOWNSTREAM CG7990
2R	14346939	2R_14346939_SNP [dm3] 2R_18459434_SNP [dm6]	A	T	5.285e^-4	0.868	DOWNSTREAM CG30116 INTRON CG30116
2R	14346942	2R_14346942_SNP [dm3] 2R_18459437_SNP [dm6]	G	T	5.285e^-4	0.868	DOWNSTREAM CG30116 INTRON CG30116
3L	9688562	3L_9688562_SNP [dm3] 3L_9695462_SNP [dm6]	T	G	5.296e^-4	0.868	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12224604	2R_12224604_SNP [dm3] 2R_16337099_SNP [dm6]	T	C	5.351e^-4	0.868	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5365746	X_5365746_SNP [dm3] X_5471713_SNP [dm6]	T	C	5.359e^-4	0.868	INTRON SPR
3L	7151877	3L_7151877_SNP [dm3] 3L_7158777_SNP [dm6]	A	G	5.403e^-4	0.868	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2R	16739392	2R_16739392_SNP [dm3] 2R_20851887_SNP [dm6]	G	T	5.405e^-4	0.868	SYNONYMOUS_CODING CG9993
2R	16739401	2R_16739401_SNP [dm3] 2R_20851896_SNP [dm6]	G	A	5.405e^-4	0.868	SYNONYMOUS_CODING CG9993
3L	18639507	3L_18639507_SNP [dm3] 3L_18646407_SNP [dm6]	A	G	5.405e^-4	0.868	INTRON MYPT-75D
3L	17050122	3L_17050122_SNP [dm3] 3L_17057022_SNP [dm6]	T	C	5.409e^-4	0.868	UTR_5_PRIME CG7724	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	14429579	2L_14429579_SNP [dm3] 2L_14429579_SNP [dm6]	T	G	5.453e^-4	0.868	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9850037	3L_9850037_SNP [dm3] 3L_9856937_SNP [dm6]	C	T	5.481e^-4	0.868	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9850057	3L_9850057_SNP [dm3] 3L_9856957_SNP [dm6]	T	C	5.481e^-4	0.868	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	15558209	X_15558209_SNP [dm3] X_15664176_SNP [dm6]	T	C	5.490e^-4	0.868	DOWNSTREAM CG8119 INTRON CR43299 EXON CR43299	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8871554	2L_8871554_SNP [dm3] 2L_8871554_SNP [dm6]	C	G	5.510e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9928060	2L_9928060_SNP [dm3] 2L_9928060_SNP [dm6]	T	C	5.638e^-4	0.868	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17574901	X_17574901_SNP [dm3] X_17680868_SNP [dm6]	T	C	5.681e^-4	0.868	INTRON chas	TF binding site mE1_TFBS_HSA
X	17574902	X_17574902_SNP [dm3] X_17680869_SNP [dm6]	A	G	5.681e^-4	0.868	INTRON chas	TF binding site mE1_TFBS_HSA
X	17574978	X_17574978_DEL [dm3] X_17680945_DEL [dm6]	GACTCCAACTCCGACTCGAA...	G	5.681e^-4	0.868	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22583947	3R_22583947_SNP [dm3] 3R_26758225_SNP [dm6]	T	C	5.682e^-4	0.868	UPSTREAM CR45562 INTERGENIC
3R	22585304	3R_22585304_SNP [dm3] 3R_26759582_SNP [dm6]	T	A	5.682e^-4	0.868	INTERGENIC
3R	24908282	3R_24908282_SNP [dm3] 3R_29082560_SNP [dm6]	T	A	5.682e^-4	0.868	INTRON CG11873	TF binding site mE1_TFBS_inv
3R	24908306	3R_24908306_SNP [dm3] 3R_29082584_SNP [dm6]	G	A	5.682e^-4	0.868	INTRON CG11873	TF binding site mE1_TFBS_inv
3R	24908312	3R_24908312_SNP [dm3] 3R_29082590_SNP [dm6]	C	T	5.682e^-4	0.868	INTRON CG11873	TF binding site mE1_TFBS_inv
2R	19126354	2R_19126354_INS [dm3] 2R_23238831_INS [dm6]	T	TGATG	5.685e^-4	0.868	INTERGENIC
2L	15463800	2L_15463800_INS [dm3] 2L_15463800_INS [dm6]	A	ATAGTATAGTA...	5.733e^-4	0.868	DOWNSTREAM CR44863 INTERGENIC
2L	17343082	2L_17343082_SNP [dm3] 2L_17343082_SNP [dm6]	T	A	5.733e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6232215	2L_6232215_SNP [dm3] 2L_6232215_SNP [dm6]	C	G	5.733e^-4	0.868	DOWNSTREAM CR44823 INTERGENIC
2L	6232237	2L_6232237_SNP [dm3] 2L_6232237_SNP [dm6]	G	A	5.733e^-4	0.868	DOWNSTREAM CR44823 INTERGENIC
2L	8476204	2L_8476204_SNP [dm3] 2L_8476204_SNP [dm6]	A	G	5.733e^-4	0.868	INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8476226	2L_8476226_SNP [dm3] 2L_8476226_SNP [dm6]	C	A	5.733e^-4	0.868	INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8476233	2L_8476233_INS [dm3] 2L_8476233_INS [dm6]	T	TAACAAT	5.733e^-4	0.868	INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8476242	2L_8476242_SNP [dm3] 2L_8476242_SNP [dm6]	G	T	5.733e^-4	0.868	INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14389630	3L_14389630_SNP [dm3] 3L_14396530_SNP [dm6]	T	C	5.752e^-4	0.868	INTERGENIC
3L	9826640	3L_9826640_SNP [dm3] 3L_9833540_SNP [dm6]	G	A	5.752e^-4	0.868	UTR_3_PRIME CG43897 DOWNSTREAM I-2
2R	13009235	2R_13009235_SNP [dm3] 2R_17121730_SNP [dm6]	T	C	5.782e^-4	0.868	EXON CR45272
2L	20331692	2L_20331692_SNP [dm3] 2L_20331692_SNP [dm6]	T	G	5.800e^-4	0.868	INTRON spir
X	15272002	X_15272002_SNP [dm3] X_15377969_SNP [dm6]	A	C	5.820e^-4	0.868	INTRON acj6
2R	13197778	2R_13197778_SNP [dm3] 2R_17310273_SNP [dm6]	C	G	5.843e^-4	0.868	INTRON mbl
2R	13198033	2R_13198033_SNP [dm3] 2R_17310528_SNP [dm6]	G	A	5.843e^-4	0.868	INTRON mbl
2R	13199979	2R_13199979_SNP [dm3] 2R_17312474_SNP [dm6]	G	T	5.843e^-4	0.868	INTRON mbl
2R	13200005	2R_13200005_SNP [dm3] 2R_17312500_SNP [dm6]	A	C	5.843e^-4	0.868	INTRON mbl
2R	13201445	2R_13201445_SNP [dm3] 2R_17313940_SNP [dm6]	A	T	5.843e^-4	0.868	INTRON mbl
2R	13201548	2R_13201548_SNP [dm3] 2R_17314043_SNP [dm6]	C	A	5.843e^-4	0.868	INTRON mbl
2R	13201590	2R_13201590_SNP [dm3] 2R_17314085_SNP [dm6]	A	G	5.843e^-4	0.868	INTRON mbl
2R	13201742	2R_13201742_SNP [dm3] 2R_17314237_SNP [dm6]	G	A	5.843e^-4	0.868	INTRON mbl
2R	17032794	2R_17032794_SNP [dm3] 2R_21145289_SNP [dm6]	G	A	5.843e^-4	0.868	SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
2R	17978686	2R_17978686_SNP [dm3] 2R_22091181_SNP [dm6]	A	G	5.843e^-4	0.868	NON_SYNONYMOUS_CODING CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073
2R	18986646	2R_18986646_SNP [dm3] 2R_23099123_SNP [dm6]	T	A	5.843e^-4	0.868	DOWNSTREAM RpL37b INTERGENIC
2R	18986765	2R_18986765_SNP [dm3] 2R_23099242_SNP [dm6]	T	C	5.843e^-4	0.868	DOWNSTREAM RpL37b INTERGENIC
3R	26597739	3R_26597739_SNP [dm3] 3R_30772017_SNP [dm6]	G	A	5.843e^-4	0.868	INTRON zfh1
3L	18320681	3L_18320681_SNP [dm3] 3L_18327581_SNP [dm6]	T	G	5.953e^-4	0.868	INTERGENIC
X	2840795	X_2840795_SNP [dm3] X_2946762_SNP [dm6]	C	A	5.953e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
2L	8172078	2L_8172078_SNP [dm3] 2L_8172078_SNP [dm6]	G	A	5.995e^-4	0.868	INTRON Piezo
2L	10345700	2L_10345700_SNP [dm3] 2L_10345700_SNP [dm6]	T	A	6.007e^-4	0.868	INTRON CG5022
3R	4716657	3R_4716657_SNP [dm3] 3R_8890935_SNP [dm6]	A	T	6.007e^-4	0.868	INTRON pyd
2R	18182966	2R_18182966_SNP [dm3] 2R_22295461_SNP [dm6]	A	T	6.026e^-4	0.868	SYNONYMOUS_CODING CG5819
X	17135333	X_17135333_SNP [dm3] X_17241300_SNP [dm6]	C	A	6.041e^-4	0.868	UTR_3_PRIME CG8915 INTRON f
2L	13538162	2L_13538162_SNP [dm3] 2L_13538162_SNP [dm6]	G	A	6.088e^-4	0.868	INTRON B4
3R	6988710	3R_6988710_SNP [dm3] 3R_11162988_SNP [dm6]	A	C	6.149e^-4	0.868	SYNONYMOUS_CODING CG4757
X	2794259	X_2794259_DEL [dm3] X_2900226_DEL [dm6]	ATTTA	A	6.177e^-4	0.868	INTRON kirre
2L	10258700	2L_10258700_SNP [dm3] 2L_10258700_SNP [dm6]	A	T	6.200e^-4	0.868	INTRON Pten
2L	10258716	2L_10258716_SNP [dm3] 2L_10258716_SNP [dm6]	G	C	6.200e^-4	0.868	INTRON Pten
2L	10258725	2L_10258725_SNP [dm3] 2L_10258725_SNP [dm6]	C	T	6.200e^-4	0.868	SPLICE_SITE_REGION Pten INTRON Pten
2L	11334522	2L_11334522_SNP [dm3] 2L_11334522_SNP [dm6]	A	C	6.255e^-4	0.868	INTERGENIC
2L	14655044	2L_14655044_SNP [dm3] 2L_14655044_SNP [dm6]	G	A	6.255e^-4	0.868	INTRON osp
2L	17078205	2L_17078205_SNP [dm3] 2L_17078205_SNP [dm6]	C	T	6.255e^-4	0.868	INTERGENIC
2L	7834216	2L_7834216_SNP [dm3] 2L_7834216_SNP [dm6]	T	C	6.255e^-4	0.868	DOWNSTREAM mts INTERGENIC
2R	14314987	2R_14314987_SNP [dm3] 2R_18427482_SNP [dm6]	A	G	6.261e^-4	0.868	SYNONYMOUS_CODING CG12263	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	19936044	2R_19936044_SNP [dm3] 2R_24048521_SNP [dm6]	T	A	6.261e^-4	0.868	UPSTREAM sei INTRON sei & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19936067	2R_19936067_SNP [dm3] 2R_24048544_SNP [dm6]	T	C	6.261e^-4	0.868	UPSTREAM sei INTRON sei & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	4715942	2R_4715942_SNP [dm3] 2R_8828437_SNP [dm6]	G	A	6.268e^-4	0.868	DOWNSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_chinmo
2R	19584032	2R_19584032_SNP [dm3] 2R_23696509_SNP [dm6]	A	G	6.301e^-4	0.868	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19585638	2R_19585638_SNP [dm3] 2R_23698115_SNP [dm6]	C	A	6.301e^-4	0.868	UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19585779	2R_19585779_SNP [dm3] 2R_23698256_SNP [dm6]	C	T	6.301e^-4	0.868	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19585927	2R_19585927_SNP [dm3] 2R_23698404_SNP [dm6]	C	A	6.301e^-4	0.868	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13380565	3L_13380565_SNP [dm3] 3L_13387465_SNP [dm6]	G	T	6.301e^-4	0.868	SYNONYMOUS_CODING CG10171 DOWNSTREAM Poc1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13380567	3L_13380567_SNP [dm3] 3L_13387467_SNP [dm6]	G	A	6.301e^-4	0.868	NON_SYNONYMOUS_CODING CG10171 DOWNSTREAM Poc1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17361239	3L_17361239_SNP [dm3] 3L_17368139_SNP [dm6]	T	A	6.301e^-4	0.868	UTR_3_PRIME Cad74A DOWNSTREAM CR45688
3L	17361240	3L_17361240_SNP [dm3] 3L_17368140_SNP [dm6]	C	T	6.301e^-4	0.868	UTR_3_PRIME Cad74A DOWNSTREAM CR45688
3R	26431773	3R_26431773_SNP [dm3] 3R_30606051_SNP [dm6]	C	T	6.301e^-4	0.868	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3R	26431969	3R_26431969_SNP [dm3] 3R_30606247_SNP [dm6]	T	A	6.301e^-4	0.868	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
X	6330658	X_6330658_SNP [dm3] X_6436625_SNP [dm6]	A	C	6.301e^-4	0.868	INTRON CG42340
3R	4455805	3R_4455805_SNP [dm3] 3R_8630083_SNP [dm6]	C	T	6.425e^-4	0.868	DOWNSTREAM 5-HT2B INTERGENIC
3R	7020906	3R_7020906_SNP [dm3] 3R_11195184_SNP [dm6]	G	A	6.514e^-4	0.868	UPSTREAM CG18577 INTERGENIC
3R	7020954	3R_7020954_SNP [dm3] 3R_11195232_SNP [dm6]	G	T	6.514e^-4	0.868	UPSTREAM CG18577 INTERGENIC
3R	7020962	3R_7020962_SNP [dm3] 3R_11195240_SNP [dm6]	C	T	6.514e^-4	0.868	UPSTREAM CG18577 INTERGENIC
X	16433597	X_16433597_SNP [dm3] X_16539564_SNP [dm6]	C	A	6.518e^-4	0.868	SYNONYMOUS_CODING CG9903
2L	9430211	2L_9430211_SNP [dm3] 2L_9430211_SNP [dm6]	A	G	6.571e^-4	0.868	SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10893555	2L_10893555_SNP [dm3] 2L_10893555_SNP [dm6]	A	C	6.583e^-4	0.868	INTERGENIC
3L	6692501	3L_6692501_SNP [dm3] 3L_6699401_SNP [dm6]	G	A	6.688e^-4	0.868	INTRON SP1173
3R	18884892	3R_18884892_SNP [dm3] 3R_23059170_SNP [dm6]	G	A	6.688e^-4	0.868	SYNONYMOUS_CODING sav UPSTREAM CG17119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15218399	3L_15218399_SNP [dm3] 3L_15225299_SNP [dm6]	A	G	6.731e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	21231950	3R_21231950_SNP [dm3] 3R_25406228_SNP [dm6]	G	A	6.743e^-4	0.868	INTRON Fur1	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7073182	2L_7073182_DEL [dm3] 2L_7073182_DEL [dm6]	AA	G	6.806e^-4	0.868	INTRON Pvf2
3R	18181793	3R_18181793_SNP [dm3] 3R_22356071_SNP [dm6]	C	T	6.872e^-4	0.868	SYNONYMOUS_CODING rdhB UPSTREAM Sar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5753620	2L_5753620_SNP [dm3] 2L_5753620_SNP [dm6]	A	T	6.959e^-4	0.868	INTRON CG11030
3L	4043386	3L_4043386_SNP [dm3] 3L_4043386_SNP [dm6]	T	C	7.000e^-4	0.868	DOWNSTREAM Rcd5 INTERGENIC
3R	14845898	3R_14845898_SNP [dm3] 3R_19020176_SNP [dm6]	A	G	7.030e^-4	0.868	DOWNSTREAM gukh INTRON gukh
X	16904496	X_16904496_SNP [dm3] X_17010463_SNP [dm6]	A	C	7.037e^-4	0.868	INTRON CG45002
2L	20329874	2L_20329874_SNP [dm3] 2L_20329874_SNP [dm6]	T	C	7.041e^-4	0.868	INTRON spir
2R	12224597	2R_12224597_SNP [dm3] 2R_16337092_SNP [dm6]	T	C	7.044e^-4	0.868	UPSTREAM Vha44 INTRON Hmgs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26857036	3R_26857036_SNP [dm3] 3R_31031314_SNP [dm6]	G	T	7.044e^-4	0.868	INTERGENIC
2L	15341334	2L_15341334_SNP [dm3] 2L_15341334_SNP [dm6]	C	T	7.064e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15377102	X_15377102_SNP [dm3] X_15483069_SNP [dm6]	A	C	7.164e^-4	0.868	INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14260970	3R_14260970_SNP [dm3] 3R_18435248_SNP [dm6]	A	T	7.165e^-4	0.868	INTRON fru
2L	6232579	2L_6232579_SNP [dm3] 2L_6232579_SNP [dm6]	A	G	7.215e^-4	0.868	DOWNSTREAM CR44823 INTERGENIC
3R	26432812	3R_26432812_SNP [dm3] 3R_30607090_SNP [dm6]	G	T	7.215e^-4	0.868	DOWNSTREAM PH4alphaNE3 INTRON CG31016	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26432892	3R_26432892_SNP [dm3] 3R_30607170_SNP [dm6]	C	T	7.215e^-4	0.868	SYNONYMOUS_CODING CG31016	TF binding site mE1_TFBS_HSA
X	20563163	X_20563163_SNP [dm3] X_20692136_SNP [dm6]	C	T	7.215e^-4	0.868	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	16363050	3L_16363050_SNP [dm3] 3L_16369950_SNP [dm6]	G	A	7.218e^-4	0.868	SYNONYMOUS_CODING CG18814 DOWNSTREAM CG4842 & 1 other
3L	16363053	3L_16363053_SNP [dm3] 3L_16369953_SNP [dm6]	T	C	7.218e^-4	0.868	SYNONYMOUS_CODING CG18814 DOWNSTREAM CG4842 & 1 other
3L	4377077	3L_4377077_SNP [dm3] 3L_4377077_SNP [dm6]	G	C	7.218e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	4377085	3L_4377085_SNP [dm3] 3L_4377085_SNP [dm6]	C	T	7.218e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	4377154	3L_4377154_SNP [dm3] 3L_4377154_SNP [dm6]	G	T	7.218e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	4377325	3L_4377325_SNP [dm3] 3L_4377325_SNP [dm6]	G	A	7.218e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	4377343	3L_4377343_SNP [dm3] 3L_4377343_SNP [dm6]	C	A	7.218e^-4	0.868	DOWNSTREAM CR44360 INTRON DopEcR
3L	6659099	3L_6659099_SNP [dm3] 3L_6665999_SNP [dm6]	A	G	7.218e^-4	0.868	UPSTREAM eIF4E-4 DOWNSTREAM CR45173 & 1 other INTERGENIC
2R	18392538	2R_18392538_SNP [dm3] 2R_22505033_SNP [dm6]	G	A	7.259e^-4	0.868	INTRON px	TF binding site BDTNP1_TFBS_twi
2R	19516388	2R_19516388_SNP [dm3] 2R_23628865_SNP [dm6]	C	T	7.259e^-4	0.868	INTERGENIC
X	17072267	X_17072267_SNP [dm3] X_17178234_SNP [dm6]	G	A	7.259e^-4	0.868	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17073523	X_17073523_SNP [dm3] X_17179490_SNP [dm6]	A	T	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17073666	X_17073666_DEL [dm3] X_17179633_DEL [dm6]	GTATCGGATCGGAT...	G	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17073981	X_17073981_SNP [dm3] X_17179948_SNP [dm6]	A	T	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074177	X_17074177_SNP [dm3] X_17180144_SNP [dm6]	T	A	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074180	X_17074180_SNP [dm3] X_17180147_SNP [dm6]	T	C	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074185	X_17074185_SNP [dm3] X_17180152_SNP [dm6]	T	A	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074197	X_17074197_DEL [dm3] X_17180164_DEL [dm6]	ATTT	A	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074303	X_17074303_SNP [dm3] X_17180270_SNP [dm6]	T	A	7.259e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074603	X_17074603_SNP [dm3] X_17180570_SNP [dm6]	C	G	7.259e^-4	0.868	INTRON baz
X	16169518	X_16169518_SNP [dm3] X_16275485_SNP [dm6]	T	C	7.290e^-4	0.868	UPSTREAM Prosalpha4 INTRON kat80	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16757429	2L_16757429_SNP [dm3] 2L_16757429_SNP [dm6]	C	T	7.295e^-4	0.868	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
3L	4197657	3L_4197657_SNP [dm3] 3L_4197657_SNP [dm6]	T	C	7.295e^-4	0.868	INTRON CG43367
3L	4197661	3L_4197661_SNP [dm3] 3L_4197661_SNP [dm6]	A	T	7.295e^-4	0.868	INTRON CG43367
3L	4197676	3L_4197676_SNP [dm3] 3L_4197676_SNP [dm6]	C	T	7.295e^-4	0.868	SPLICE_SITE_REGION CG43367 INTRON CG43367
3R	22508483	3R_22508483_DEL [dm3] 3R_26682761_DEL [dm6]	CAT	C	7.325e^-4	0.868	UPSTREAM beat-VII INTERGENIC
2R	9275696	2R_9275696_SNP [dm3] 2R_13388191_SNP [dm6]	G	T	7.334e^-4	0.868	INTERGENIC
2R	18058505	2R_18058505_SNP [dm3] 2R_22171000_SNP [dm6]	A	G	7.389e^-4	0.868	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14923716	3L_14923716_SNP [dm3] 3L_14930616_SNP [dm6]	G	A	7.389e^-4	0.868	INTRON DCX-EMAP
2L	15182240	2L_15182240_SNP [dm3] 2L_15182240_SNP [dm6]	C	A	7.555e^-4	0.868	INTRON CG4168	TF binding site mE1_TFBS_cad
2L	10602700	2L_10602700_INS [dm3] 2L_10602700_INS [dm6]	T	TT	7.585e^-4	0.868	INTRON Trim9
2L	15187337	2L_15187337_SNP [dm3] 2L_15187337_SNP [dm6]	T	A	7.613e^-4	0.868	INTRON CG4168
2L	17636056	2L_17636056_SNP [dm3] 2L_17636056_SNP [dm6]	T	G	7.613e^-4	0.868	INTERGENIC
3L	16875744	3L_16875744_SNP [dm3] 3L_16882644_SNP [dm6]	A	G	7.616e^-4	0.868	INTRON Lmpt
3R	11819375	3R_11819375_SNP [dm3] 3R_15993653_SNP [dm6]	G	A	7.627e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819478	3R_11819478_SNP [dm3] 3R_15993756_SNP [dm6]	C	T	7.627e^-4	0.868	UPSTREAM srp DOWNSTREAM CR44133 INTRON srp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22508403	3R_22508403_SNP [dm3] 3R_26682681_SNP [dm6]	G	C	7.665e^-4	0.868	UPSTREAM beat-VII INTERGENIC
2R	6431324	2R_6431324_SNP [dm3] 2R_10543819_SNP [dm6]	A	C	7.691e^-4	0.868	UPSTREAM lola INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	2840786	X_2840786_SNP [dm3] X_2946753_SNP [dm6]	T	C	7.691e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	19931559	X_19931559_SNP [dm3] X_20037526_SNP [dm6]	G	A	7.761e^-4	0.868	INTRON Dop2R
X	15285657	X_15285657_SNP [dm3] X_15391624_SNP [dm6]	G	A	7.818e^-4	0.868	INTRON Cngl
3R	11819317	3R_11819317_SNP [dm3] 3R_15993595_SNP [dm6]	T	G	7.838e^-4	0.868	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	12972022	3L_12972022_SNP [dm3] 3L_12978922_SNP [dm6]	T	A	7.914e^-4	0.868	INTERGENIC
3L	18320662	3L_18320662_DEL [dm3] 3L_18327562_DEL [dm6]	AAGGTTATAAAACTTAAT...	A	7.914e^-4	0.868	INTERGENIC
X	2840797	X_2840797_SNP [dm3] X_2946764_SNP [dm6]	C	A	7.914e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840809	X_2840809_SNP [dm3] X_2946776_SNP [dm6]	G	A	7.914e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840810	X_2840810_SNP [dm3] X_2946777_SNP [dm6]	G	T	7.914e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840823	X_2840823_SNP [dm3] X_2946790_SNP [dm6]	T	A	7.914e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	2840833	X_2840833_INS [dm3] X_2946800_INS [dm6]	T	TATTTGTCAAATTGACACGT...	7.914e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
2R	14723268	2R_14723268_SNP [dm3] 2R_18835763_SNP [dm6]	C	A	7.927e^-4	0.868	UPSTREAM CG15098 INTRON CG15083
2R	19931117	2R_19931117_SNP [dm3] 2R_24043594_SNP [dm6]	G	C	7.927e^-4	0.868	SYNONYMOUS_CODING IntS1 DOWNSTREAM tsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16606189	X_16606189_SNP [dm3] X_16712156_SNP [dm6]	T	C	7.927e^-4	0.868	NON_SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17620613	X_17620613_SNP [dm3] X_17726580_SNP [dm6]	T	C	7.927e^-4	0.868	INTRON CG42684
X	17620737	X_17620737_SNP [dm3] X_17726704_SNP [dm6]	G	C	7.927e^-4	0.868	INTRON CG42684
X	17620828	X_17620828_SNP [dm3] X_17726795_SNP [dm6]	A	G	7.927e^-4	0.868	INTRON CG42684
2R	8245103	2R_8245103_SNP [dm3] 2R_12357598_SNP [dm6]	G	C	7.937e^-4	0.868	SYNONYMOUS_CODING CG30049
3R	18384049	3R_18384049_SNP [dm3] 3R_22558327_SNP [dm6]	C	G	7.947e^-4	0.868	DOWNSTREAM CG5278 INTERGENIC
2L	4905409	2L_4905409_SNP [dm3] 2L_4905409_SNP [dm6]	T	C	7.984e^-4	0.868	INTRON CG2837	TF binding site mE1_TFBS_cad
3R	27362486	3R_27362486_SNP [dm3] 3R_31536764_SNP [dm6]	T	A	8.123e^-4	0.868	INTERGENIC
2R	9493781	2R_9493781_SNP [dm3] 2R_13606276_SNP [dm6]	T	C	8.140e^-4	0.868	UPSTREAM CG34236 INTERGENIC
3R	26431939	3R_26431939_SNP [dm3] 3R_30606217_SNP [dm6]	C	T	8.142e^-4	0.868	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
X	17621055	X_17621055_SNP [dm3] X_17727022_SNP [dm6]	G	T	8.247e^-4	0.868	INTRON CG42684
3L	17048838	3L_17048838_SNP [dm3] 3L_17055738_SNP [dm6]	T	C	8.263e^-4	0.868	DOWNSTREAM rogdi INTRON CG7724
3R	26178772	3R_26178772_SNP [dm3] 3R_30353050_SNP [dm6]	T	C	8.263e^-4	0.868	INTRON hdc
3R	5263870	3R_5263870_SNP [dm3] 3R_9438148_SNP [dm6]	G	T	8.263e^-4	0.868	INTRON ps
2L	805091	2L_805091_SNP [dm3] 2L_805091_SNP [dm6]	G	A	8.310e^-4	0.868	INTERGENIC
2R	11818667	2R_11818667_SNP [dm3] 2R_15931162_SNP [dm6]	G	A	8.401e^-4	0.868	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8609950	2R_8609950_SNP [dm3] 2R_12722445_SNP [dm6]	G	T	8.401e^-4	0.868	UTR_5_PRIME CG42663
3L	2182053	3L_2182053_SNP [dm3] 3L_2182053_SNP [dm6]	T	A	8.401e^-4	0.868	INTERGENIC
3L	4728781	3L_4728781_SNP [dm3] 3L_4728781_SNP [dm6]	G	A	8.401e^-4	0.868	INTRON RhoGEF64C
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	8.438e^-4	0.868	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12315601	2R_12315601_SNP [dm3] 2R_16428096_SNP [dm6]	A	G	8.489e^-4	0.868	INTRON Sema-2b
3L	3551161	3L_3551161_INS [dm3] 3L_3551161_INS [dm6]	A	ACAATTATAATGGTT...	8.489e^-4	0.868	INTRON Eip63E
3L	4948958	3L_4948958_SNP [dm3] 3L_4948958_SNP [dm6]	A	G	8.489e^-4	0.868	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11080831	2L_11080831_SNP [dm3] 2L_11080831_SNP [dm6]	A	G	8.503e^-4	0.868	INTRON AstC
2L	19904647	2L_19904647_SNP [dm3] 2L_19904647_SNP [dm6]	G	A	8.509e^-4	0.868	INTRON sick
3L	11958766	3L_11958766_SNP [dm3] 3L_11965666_SNP [dm6]	C	G	8.511e^-4	0.868	INTRON prc
X	20406926	X_20406926_SNP [dm3] X_20535899_SNP [dm6]	A	T	8.516e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	705412	2L_705412_SNP [dm3] 2L_705412_SNP [dm6]	A	T	8.526e^-4	0.868	INTRON ds	TF binding site mE1_TFBS_HSA
2L	17212431	2L_17212431_SNP [dm3] 2L_17212431_SNP [dm6]	C	T	8.572e^-4	0.868	INTRON beat-IIIc
2L	17212899	2L_17212899_DEL [dm3] 2L_17212899_DEL [dm6]	GTTGT	A	8.572e^-4	0.868	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA
2L	17212910	2L_17212910_DEL [dm3] 2L_17212910_DEL [dm6]	AAAGATTTGATTTA...	A	8.572e^-4	0.868	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA
2R	19900984	2R_19900984_DEL [dm3] 2R_24013461_DEL [dm6]	AGTGGAACCACA...	A	8.605e^-4	0.868	INTRON Unc-89
3R	22690496	3R_22690496_SNP [dm3] 3R_26864774_SNP [dm6]	A	G	8.606e^-4	0.868	SYNONYMOUS_CODING ball DOWNSTREAM IntS12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18693564	2L_18693564_SNP [dm3] 2L_18693564_SNP [dm6]	C	T	8.632e^-4	0.868	INTRON CG10383
X	16039736	X_16039736_SNP [dm3] X_16145703_SNP [dm6]	T	A	8.688e^-4	0.868	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
X	16039817	X_16039817_SNP [dm3] X_16145784_SNP [dm6]	T	A	8.688e^-4	0.868	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2R	13009076	2R_13009076_SNP [dm3] 2R_17121571_SNP [dm6]	A	G	8.705e^-4	0.868	EXON CR45272
2R	16106218	2R_16106218_SNP [dm3] 2R_20218713_SNP [dm6]	C	T	8.705e^-4	0.868	INTERGENIC
2R	16106349	2R_16106349_SNP [dm3] 2R_20218844_SNP [dm6]	T	A	8.705e^-4	0.868	INTERGENIC
2R	16106373	2R_16106373_SNP [dm3] 2R_20218868_SNP [dm6]	T	A	8.705e^-4	0.868	INTERGENIC
X	18480062	X_18480062_SNP [dm3] X_18586029_SNP [dm6]	T	G	8.705e^-4	0.868	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5575305	X_5575305_SNP [dm3] X_5681272_SNP [dm6]	G	A	8.769e^-4	0.868	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
2R	17576500	2R_17576500_SNP [dm3] 2R_21688995_SNP [dm6]	G	A	8.797e^-4	0.868	UTR_5_PRIME CG10307 UPSTREAM CG30285	TF binding site mE1_TFBS_Trl
2L	1243653	2L_1243653_SNP [dm3] 2L_1243653_SNP [dm6]	C	T	8.844e^-4	0.868	DOWNSTREAM CG5397 INTERGENIC
2L	6520736	2L_6520736_SNP [dm3] 2L_6520736_SNP [dm6]	T	C	8.844e^-4	0.868	INTRON CG31637
2L	11858736	2L_11858736_SNP [dm3] 2L_11858736_SNP [dm6]	C	A	8.852e^-4	0.868	INTRON Pde1c
2L	11858739	2L_11858739_SNP [dm3] 2L_11858739_SNP [dm6]	A	G	8.852e^-4	0.868	INTRON Pde1c
2L	2739121	2L_2739121_SNP [dm3] 2L_2739121_SNP [dm6]	A	G	8.916e^-4	0.868	SYNONYMOUS_CODING CG31689 UPSTREAM Hrs
2L	2739130	2L_2739130_SNP [dm3] 2L_2739130_SNP [dm6]	A	G	8.916e^-4	0.868	SYNONYMOUS_CODING CG31689 UPSTREAM Hrs
2L	8851989	2L_8851989_SNP [dm3] 2L_8851989_SNP [dm6]	C	T	8.923e^-4	0.868	DOWNSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3309301	3L_3309301_SNP [dm3] 3L_3309301_SNP [dm6]	G	A	8.951e^-4	0.868	UPSTREAM ZnT63C INTRON ZnT63C
2L	18993669	2L_18993669_SNP [dm3] 2L_18993669_SNP [dm6]	A	C	8.960e^-4	0.868	UTR_3_PRIME CG10650	TF binding site mE1_TFBS_cad
2L	18993683	2L_18993683_SNP [dm3] 2L_18993683_SNP [dm6]	G	A	8.960e^-4	0.868	UTR_3_PRIME CG10650	TF binding site mE1_TFBS_cad
2L	19696676	2L_19696676_SNP [dm3] 2L_19696676_SNP [dm6]	G	C	8.960e^-4	0.868	INTRON Lar
3L	11509292	3L_11509292_SNP [dm3] 3L_11516192_SNP [dm6]	A	C	8.960e^-4	0.868	INTRON CG7512
3L	17051193	3L_17051193_SNP [dm3] 3L_17058093_SNP [dm6]	G	A	8.960e^-4	0.868	SYNONYMOUS_CODING CG7724 DOWNSTREAM Rbp6	TF binding site mE1_TFBS_cad
X	17073991	X_17073991_SNP [dm3] X_17179958_SNP [dm6]	A	C	8.963e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	17074234	X_17074234_SNP [dm3] X_17180201_SNP [dm6]	T	G	8.963e^-4	0.868	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	10145335	X_10145335_SNP [dm3] X_10251302_SNP [dm6]	T	C	8.982e^-4	0.868	INTRON Hk
X	12207298	X_12207298_SNP [dm3] X_12313265_SNP [dm6]	G	C	8.982e^-4	0.868	INTRON Ten-a
X	5998298	X_5998298_SNP [dm3] X_6104265_SNP [dm6]	T	G	8.982e^-4	0.868	UTR_3_PRIME Ca-alpha1T DOWNSTREAM Nep1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5998406	X_5998406_SNP [dm3] X_6104373_SNP [dm6]	G	A	8.982e^-4	0.868	UTR_3_PRIME Ca-alpha1T DOWNSTREAM Nep1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5998466	X_5998466_SNP [dm3] X_6104433_SNP [dm6]	T	G	8.982e^-4	0.868	UTR_3_PRIME Ca-alpha1T DOWNSTREAM Nep1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9024741	X_9024741_INS [dm3] X_9130708_INS [dm6]	G	GG	8.982e^-4	0.868	INTRON fend	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6623413	2L_6623413_SNP [dm3] 2L_6623413_SNP [dm6]	T	G	9.040e^-4	0.868	NON_SYNONYMOUS_CODING CG34345
X	4922686	X_4922686_SNP [dm3] X_5028653_SNP [dm6]	G	T	9.078e^-4	0.868	INTRON CR44833
3L	14726755	3L_14726755_SNP [dm3] 3L_14733655_SNP [dm6]	G	C	9.121e^-4	0.868	UPSTREAM CG13471 INTRON ome
3R	16252247	3R_16252247_SNP [dm3] 3R_20426525_SNP [dm6]	A	G	9.221e^-4	0.868	INTRON Gfrl
3R	21419678	3R_21419678_INS [dm3] 3R_25593956_INS [dm6]	T	TA	9.235e^-4	0.868	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21419683	3R_21419683_SNP [dm3] 3R_25593961_SNP [dm6]	T	C	9.235e^-4	0.868	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12972034	3L_12972034_SNP [dm3] 3L_12978934_SNP [dm6]	G	C	9.260e^-4	0.868	INTERGENIC
2R	12378736	2R_12378736_SNP [dm3] 2R_16491231_SNP [dm6]	C	G	9.321e^-4	0.868	UTR_5_PRIME S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	12568552	2R_12568552_SNP [dm3] 2R_16681047_SNP [dm6]	A	C	9.321e^-4	0.868	SYNONYMOUS_CODING CG30463
2R	12568564	2R_12568564_SNP [dm3] 2R_16681059_SNP [dm6]	G	C	9.321e^-4	0.868	SYNONYMOUS_CODING CG30463
2R	16301219	2R_16301219_SNP [dm3] 2R_20413714_SNP [dm6]	C	T	9.321e^-4	0.868	INTERGENIC
2R	18593666	2R_18593666_SNP [dm3] 2R_22706161_SNP [dm6]	T	A	9.321e^-4	0.868	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
2R	18593667	2R_18593667_SNP [dm3] 2R_22706162_SNP [dm6]	G	T	9.321e^-4	0.868	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
X	8950936	X_8950936_DEL [dm3] X_9056903_DEL [dm6]	TTA	T	9.321e^-4	0.868	INTRON CG15365	TF binding site mE1_TFBS_chinmo
X	8950941	X_8950941_SNP [dm3] X_9056908_SNP [dm6]	A	C	9.321e^-4	0.868	INTRON CG15365	TF binding site mE1_TFBS_chinmo
X	8950943	X_8950943_DEL [dm3] X_9056910_DEL [dm6]	TTAAA	T	9.321e^-4	0.868	INTRON CG15365	TF binding site mE1_TFBS_chinmo
3L	7335479	3L_7335479_SNP [dm3] 3L_7342379_SNP [dm6]	G	A	9.359e^-4	0.868	SYNONYMOUS_CODING CG8596 DOWNSTREAM lark	TF binding site mE1_TFBS_cad
2R	18279841	2R_18279841_SNP [dm3] 2R_22392336_SNP [dm6]	C	G	9.390e^-4	0.868	SYNONYMOUS_CODING CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17213466	2L_17213466_SNP [dm3] 2L_17213466_SNP [dm6]	G	A	9.403e^-4	0.868	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17213786	2L_17213786_SNP [dm3] 2L_17213786_SNP [dm6]	C	T	9.403e^-4	0.868	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10000097	X_10000097_SNP [dm3] X_10106064_SNP [dm6]	A	C	9.418e^-4	0.868	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	750328	3L_750328_SNP [dm3] 3L_750328_SNP [dm6]	A	G	9.466e^-4	0.868	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2L	13700892	2L_13700892_SNP [dm3] 2L_13700892_SNP [dm6]	G	T	9.475e^-4	0.868	INTRON CG31814
2L	13700894	2L_13700894_SNP [dm3] 2L_13700894_SNP [dm6]	T	C	9.475e^-4	0.868	INTRON CG31814
2L	13700947	2L_13700947_DEL [dm3] 2L_13700947_DEL [dm6]	ATGCCTTTTAAA...	A	9.475e^-4	0.868	INTRON CG31814
2L	13700991	2L_13700991_DEL [dm3] 2L_13700991_DEL [dm6]	AT	A	9.475e^-4	0.868	INTRON CG31814
2L	13700995	2L_13700995_DEL [dm3] 2L_13700995_DEL [dm6]	AAATATATA	GC	9.475e^-4	0.868	INTRON CG31814
3R	19953816	3R_19953816_SNP [dm3] 3R_24128094_SNP [dm6]	C	T	9.517e^-4	0.868	UTR_3_PRIME Rootletin & 1 other
3R	18884903	3R_18884903_SNP [dm3] 3R_23059181_SNP [dm6]	A	G	9.517e^-4	0.868	SYNONYMOUS_CODING sav UPSTREAM CG17119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12176006	2L_12176006_SNP [dm3] 2L_12176006_SNP [dm6]	G	A	9.537e^-4	0.868	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2R	10469008	2R_10469008_SNP [dm3] 2R_14581503_SNP [dm6]	G	T	9.537e^-4	0.868	INTRON ttv
3L	1281044	3L_1281044_SNP [dm3] 3L_1281044_SNP [dm6]	C	T	9.537e^-4	0.868	INTRON CG32333
3L	1408005	3L_1408005_SNP [dm3] 3L_1408005_SNP [dm6]	A	G	9.537e^-4	0.868	INTRON Ptp61F
3R	18137269	3R_18137269_SNP [dm3] 3R_22311547_SNP [dm6]	C	T	9.537e^-4	0.868	UTR_3_PRIME CG34377	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22200566	3R_22200566_SNP [dm3] 3R_26374844_SNP [dm6]	G	T	9.537e^-4	0.868	INTERGENIC
3R	24496359	3R_24496359_INS [dm3] 3R_28670637_INS [dm6]	G	GGGT	9.537e^-4	0.868	UPSTREAM CG9989 DOWNSTREAM CG33346 INTERGENIC
X	14696353	X_14696353_SNP [dm3] X_14802320_SNP [dm6]	T	G	9.537e^-4	0.868	INTRON rut
X	19862621	X_19862621_SNP [dm3] X_19968588_SNP [dm6]	C	T	9.537e^-4	0.868	UTR_3_PRIME Nep3 DOWNSTREAM Nep3
X	4317639	X_4317639_SNP [dm3] X_4423606_SNP [dm6]	T	A	9.537e^-4	0.868	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	2382032	X_2382032_SNP [dm3] X_2487999_SNP [dm6]	A	G	9.591e^-4	0.868	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo
2L	9729674	2L_9729674_SNP [dm3] 2L_9729674_SNP [dm6]	A	G	9.598e^-4	0.868	UPSTREAM CG13116 INTRON Nckx30C
2L	7201087	2L_7201087_SNP [dm3] 2L_7201087_SNP [dm6]	T	A	9.664e^-4	0.868	INTRON CG4502
2L	8226253	2L_8226253_SNP [dm3] 2L_8226253_SNP [dm6]	A	G	9.664e^-4	0.868	SYNONYMOUS_CODING Pvr
2R	10411937	2R_10411937_SNP [dm3] 2R_14524432_SNP [dm6]	C	G	9.675e^-4	0.868	INTERGENIC
2R	10429873	2R_10429873_SNP [dm3] 2R_14542368_SNP [dm6]	C	T	9.675e^-4	0.868	INTRON ttv
2R	10429878	2R_10429878_SNP [dm3] 2R_14542373_SNP [dm6]	C	A	9.675e^-4	0.868	INTRON ttv
2R	10429889	2R_10429889_SNP [dm3] 2R_14542384_SNP [dm6]	T	G	9.675e^-4	0.868	INTRON ttv
2R	10429916	2R_10429916_SNP [dm3] 2R_14542411_SNP [dm6]	G	A	9.675e^-4	0.868	INTRON ttv
2R	4777673	2R_4777673_SNP [dm3] 2R_8890168_SNP [dm6]	T	C	9.675e^-4	0.868	SYNONYMOUS_CODING CG8272	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	2840665	X_2840665_SNP [dm3] X_2946632_SNP [dm6]	C	A	9.675e^-4	0.868	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
3L	7335881	3L_7335881_SNP [dm3] 3L_7342781_SNP [dm6]	G	A	9.689e^-4	0.868	SYNONYMOUS_CODING CG8596 DOWNSTREAM lark	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7336372	3L_7336372_SNP [dm3] 3L_7343272_SNP [dm6]	A	G	9.689e^-4	0.868	SYNONYMOUS_CODING CG8596	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	9.779e^-4	0.868	UTR_5_PRIME CG5819 INTRON CG5819
X	17184453	X_17184453_SNP [dm3] X_17290420_SNP [dm6]	T	C	9.779e^-4	0.868	INTRON CG5445 & 1 other
X	19947700	X_19947700_SNP [dm3] X_20053667_SNP [dm6]	G	A	9.779e^-4	0.868	INTRON Dop2R
3R	26095383	3R_26095383_SNP [dm3] 3R_30269661_SNP [dm6]	C	G	9.779e^-4	0.868	INTERGENIC
3L	13370655	3L_13370655_SNP [dm3] 3L_13377555_SNP [dm6]	G	T	9.794e^-4	0.868	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3849098	2L_3849098_SNP [dm3] 2L_3849098_SNP [dm6]	A	C	9.804e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	20624387	2L_20624387_SNP [dm3] 2L_20624387_SNP [dm6]	G	C	9.806e^-4	0.868	INTRON CR44909
3L	14757005	3L_14757005_SNP [dm3] 3L_14763905_SNP [dm6]	C	T	9.808e^-4	0.868	UTR_5_PRIME CG9384	TF binding site mE1_TFBS_cad
2L	6091130	2L_6091130_INS [dm3] 2L_6091130_INS [dm6]	A	ACATA	9.869e^-4	0.868	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	12410131	3R_12410131_SNP [dm3] 3R_16584409_SNP [dm6]	T	A	9.879e^-4	0.868	UPSTREAM Scp2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17213966	2L_17213966_SNP [dm3] 2L_17213966_SNP [dm6]	G	A	9.902e^-4	0.868	INTRON beat-IIIc	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6267352	3R_6267352_SNP [dm3] 3R_10441630_SNP [dm6]	A	C	9.942e^-4	0.868	INTERGENIC

By genomic position
Variant impact
Gene name

MBeta phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results