DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.347e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0715855

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.881	0.0896
In_3R_P	2.7143	0.0995

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

632 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7883981	2R_7883981_DEL [dm3] 2R_11996476_DEL [dm6]	CCTGACAAGATAA...	T	2.215e^-5	0.952	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2R	1708743	2R_1708743_SNP [dm3] 2R_5821238_SNP [dm6]	A	G	3.311e^-5	0.952	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2071035	X_2071035_SNP [dm3] X_2177002_SNP [dm6]	G	A	4.809e^-5	0.952	SYNONYMOUS_CODING Cyp4d2 EXON CR44690
3L	18419998	3L_18419998_SNP [dm3] 3L_18426898_SNP [dm6]	A	G	5.075e^-5	0.952	INTERGENIC
3L	18420044	3L_18420044_SNP [dm3] 3L_18426944_SNP [dm6]	A	G	5.075e^-5	0.952	INTERGENIC
3L	18420164	3L_18420164_SNP [dm3] 3L_18427064_SNP [dm6]	A	C	5.075e^-5	0.952	INTERGENIC
3L	14209041	3L_14209041_SNP [dm3] 3L_14215941_SNP [dm6]	C	A	6.073e^-5	0.952	INTRON nuf
3L	10715464	3L_10715464_SNP [dm3] 3L_10722364_SNP [dm6]	C	T	6.362e^-5	0.952	INTERGENIC
2R	8508752	2R_8508752_INS [dm3] 2R_12621247_INS [dm6]	A	AA	7.141e^-5	0.952	UTR_3_PRIME Galphaq DOWNSTREAM Galphaq
3L	1613273	3L_1613273_SNP [dm3] 3L_1613273_SNP [dm6]	A	T	7.980e^-5	0.952	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
3L	16801950	3L_16801950_SNP [dm3] 3L_16808850_SNP [dm6]	T	G	9.016e^-5	0.952	SYNONYMOUS_CODING nudC DOWNSTREAM CG13024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	10029833	2R_10029833_SNP [dm3] 2R_14142328_SNP [dm6]	C	G	9.160e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
X	5409592	X_5409592_SNP [dm3] X_5515559_SNP [dm6]	T	C	9.461e^-5	0.952	INTERGENIC
3L	1701602	3L_1701602_SNP [dm3] 3L_1701602_SNP [dm6]	A	T	1.031e^-4	0.952	SYNONYMOUS_CODING CG13931 INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5484356	X_5484356_SNP [dm3] X_5590323_SNP [dm6]	G	A	1.031e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9456384	X_9456384_SNP [dm3] X_9562351_SNP [dm6]	C	G	1.141e^-4	0.952	NON_SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1381957	2L_1381957_SNP [dm3] 2L_1381957_SNP [dm6]	A	G	1.158e^-4	0.952	SYNONYMOUS_CODING lea UPSTREAM CR44898 EXON CR44897	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14268914	2R_14268914_SNP [dm3] 2R_18381409_SNP [dm6]	C	G	1.403e^-4	0.952	UTR_3_PRIME CG43202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	1.435e^-4	0.952	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27204728	3R_27204728_SNP [dm3] 3R_31379006_SNP [dm6]	T	A	1.465e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13354858	2L_13354858_SNP [dm3] 2L_13354858_SNP [dm6]	A	T	1.578e^-4	0.952	UTR_5_PRIME CG9395 INTRON CG9395	TF binding site mE1_TFBS_Trl
X	13576722	X_13576722_DEL [dm3] X_13682689_DEL [dm6]	TGA	T	1.579e^-4	0.952	UPSTREAM CG11158 INTERGENIC
X	13576735	X_13576735_DEL [dm3] X_13682702_DEL [dm6]	TG	T	1.579e^-4	0.952	UPSTREAM CG11158 INTERGENIC
3L	679529	3L_679529_SNP [dm3] 3L_679529_SNP [dm6]	G	A	1.617e^-4	0.952	NON_SYNONYMOUS_CODING CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	679543	3L_679543_SNP [dm3] 3L_679543_SNP [dm6]	A	T	1.617e^-4	0.952	NON_SYNONYMOUS_CODING CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	679564	3L_679564_SNP [dm3] 3L_679564_SNP [dm6]	C	G	1.617e^-4	0.952	NON_SYNONYMOUS_CODING CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	679569	3L_679569_SNP [dm3] 3L_679569_SNP [dm6]	A	G	1.617e^-4	0.952	SYNONYMOUS_CODING CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8999028	3L_8999028_SNP [dm3] 3L_9005928_SNP [dm6]	G	A	1.617e^-4	0.952	SYNONYMOUS_CODING Doc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12678466	3L_12678466_SNP [dm3] 3L_12685366_SNP [dm6]	G	C	1.655e^-4	0.952	INTERGENIC
2R	12131054	2R_12131054_SNP [dm3] 2R_16243549_SNP [dm6]	A	G	1.674e^-4	0.952	UTR_3_PRIME CngA	TF binding site mE1_TFBS_inv
2R	9853361	2R_9853361_SNP [dm3] 2R_13965856_SNP [dm6]	G	A	1.674e^-4	0.952	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9853371	2R_9853371_SNP [dm3] 2R_13965866_SNP [dm6]	G	A	1.674e^-4	0.952	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4971178	3L_4971178_SNP [dm3] 3L_4971178_SNP [dm6]	G	A	1.674e^-4	0.952	INTRON Con
X	10559165	X_10559165_SNP [dm3] X_10665132_SNP [dm6]	G	A	1.674e^-4	0.952	INTRON X11Lbeta
X	16840856	X_16840856_SNP [dm3] X_16946823_SNP [dm6]	T	C	1.674e^-4	0.952	INTRON RhoGAP15B	TF binding site mE1_TFBS_zfh1
X	16841640	X_16841640_SNP [dm3] X_16947607_SNP [dm6]	A	G	1.674e^-4	0.952	DOWNSTREAM CG13000 INTRON RhoGAP15B
X	16841666	X_16841666_SNP [dm3] X_16947633_SNP [dm6]	T	G	1.674e^-4	0.952	DOWNSTREAM CG13000 INTRON RhoGAP15B
X	16841682	X_16841682_SNP [dm3] X_16947649_SNP [dm6]	C	A	1.674e^-4	0.952	DOWNSTREAM CG13000 INTRON RhoGAP15B
X	16842407	X_16842407_SNP [dm3] X_16948374_SNP [dm6]	G	C	1.674e^-4	0.952	NON_SYNONYMOUS_CODING CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6924102	2R_6924102_SNP [dm3] 2R_11036597_SNP [dm6]	C	G	1.702e^-4	0.952	INTRON luna
2R	19143044	2R_19143044_SNP [dm3] 2R_23255521_SNP [dm6]	T	C	1.746e^-4	0.952	INTERGENIC
X	13576720	X_13576720_SNP [dm3] X_13682687_SNP [dm6]	G	A	1.751e^-4	0.952	UPSTREAM CG11158 INTERGENIC
X	13576721	X_13576721_SNP [dm3] X_13682688_SNP [dm6]	A	T	1.751e^-4	0.952	UPSTREAM CG11158 INTERGENIC
3R	14346895	3R_14346895_SNP [dm3] 3R_18521173_SNP [dm6]	T	C	1.882e^-4	0.952	INTRON fru
3L	8856179	3L_8856179_SNP [dm3] 3L_8863079_SNP [dm6]	C	T	1.885e^-4	0.952	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	16795414	2L_16795414_SNP [dm3] 2L_16795414_SNP [dm6]	C	T	1.915e^-4	0.952	SYNONYMOUS_CODING Ugt36Ba
2L	7004183	2L_7004183_SNP [dm3] 2L_7004183_SNP [dm6]	C	G	1.919e^-4	0.952	INTRON uif	TF binding site BDTNP1_TFBS_dl
2R	16891892	2R_16891892_SNP [dm3] 2R_21004387_SNP [dm6]	C	T	1.924e^-4	0.952	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11558445	X_11558445_SNP [dm3] X_11664412_SNP [dm6]	T	C	1.924e^-4	0.952	INTRON Ptp10D
X	11558448	X_11558448_SNP [dm3] X_11664415_SNP [dm6]	C	T	1.924e^-4	0.952	INTRON Ptp10D
X	11558451	X_11558451_SNP [dm3] X_11664418_SNP [dm6]	C	T	1.924e^-4	0.952	INTRON Ptp10D
2R	9853362	2R_9853362_SNP [dm3] 2R_13965857_SNP [dm6]	T	C	1.966e^-4	0.952	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11587511	2R_11587511_SNP [dm3] 2R_15700006_SNP [dm6]	T	C	1.970e^-4	0.952	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18271908	3L_18271908_SNP [dm3] 3L_18278808_SNP [dm6]	A	C	1.981e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	13444972	X_13444972_SNP [dm3] X_13550939_SNP [dm6]	A	C	1.981e^-4	0.952	INTERGENIC
X	5409591	X_5409591_SNP [dm3] X_5515558_SNP [dm6]	C	T	1.982e^-4	0.952	INTERGENIC
2R	4496087	2R_4496087_SNP [dm3] 2R_8608582_SNP [dm6]	T	C	2.046e^-4	0.952	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6758704	3L_6758704_SNP [dm3] 3L_6765604_SNP [dm6]	G	A	2.131e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	8127826	X_8127826_SNP [dm3] X_8233793_SNP [dm6]	G	A	2.142e^-4	0.952	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8127868	X_8127868_SNP [dm3] X_8233835_SNP [dm6]	C	A	2.142e^-4	0.952	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	2320148	X_2320148_SNP [dm3] X_2426115_SNP [dm6]	C	T	2.230e^-4	0.952	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC	transposable element FlyBase
3L	1608120	3L_1608120_SNP [dm3] 3L_1608120_SNP [dm6]	G	C	2.233e^-4	0.952	NON_SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	12648515	X_12648515_SNP [dm3] X_12754482_SNP [dm6]	C	T	2.233e^-4	0.952	EXON CR44619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	4962248	2R_4962248_SNP [dm3] 2R_9074743_SNP [dm6]	G	A	2.272e^-4	0.952	INTRON ana
3R	10284730	3R_10284730_SNP [dm3] 3R_14459008_SNP [dm6]	T	C	2.300e^-4	0.952	INTRON cv-c
3R	3642548	3R_3642548_SNP [dm3] 3R_7816826_SNP [dm6]	G	A	2.300e^-4	0.952	INTRON CG34384
2R	10269884	2R_10269884_SNP [dm3] 2R_14382379_SNP [dm6]	C	T	2.333e^-4	0.952	SYNONYMOUS_CODING Dh44-R1
2R	10269890	2R_10269890_SNP [dm3] 2R_14382385_SNP [dm6]	C	T	2.333e^-4	0.952	SYNONYMOUS_CODING Dh44-R1
2R	19977451	2R_19977451_SNP [dm3] 2R_24089928_SNP [dm6]	T	C	2.333e^-4	0.952	SYNONYMOUS_CODING snama DOWNSTREAM snama
3R	24419837	3R_24419837_SNP [dm3] 3R_28594115_SNP [dm6]	A	G	2.379e^-4	0.952	EXON CR43440
3R	24419847	3R_24419847_SNP [dm3] 3R_28594125_SNP [dm6]	T	C	2.379e^-4	0.952	EXON CR43440
3R	24787956	3R_24787956_SNP [dm3] 3R_28962234_SNP [dm6]	A	T	2.379e^-4	0.952	INTRON CG14521
3R	24788083	3R_24788083_SNP [dm3] 3R_28962361_SNP [dm6]	G	C	2.379e^-4	0.952	INTRON CG14521
3R	7105516	3R_7105516_SNP [dm3] 3R_11279794_SNP [dm6]	A	T	2.379e^-4	0.952	INTRON CR31386
2R	1700442	2R_1700442_SNP [dm3] 2R_5812937_SNP [dm6]	C	A	2.393e^-4	0.952	INTRON dpr12	TF binding site mE1_TFBS_chinmo
X	16844610	X_16844610_SNP [dm3] X_16950577_SNP [dm6]	G	T	2.442e^-4	0.952	INTRON RhoGAP15B
3R	9978236	3R_9978236_SNP [dm3] 3R_14152514_SNP [dm6]	G	A	2.554e^-4	0.952	SYNONYMOUS_CODING CG42500 UPSTREAM CG14355 DOWNSTREAM CG9722
X	17814402	X_17814402_SNP [dm3] X_17920369_SNP [dm6]	C	G	2.557e^-4	0.952	INTRON CG6847
2L	736882	2L_736882_SNP [dm3] 2L_736882_SNP [dm6]	A	T	2.627e^-4	0.952	DOWNSTREAM Eaat2 INTERGENIC
2L	9424216	2L_9424216_SNP [dm3] 2L_9424216_SNP [dm6]	T	G	2.644e^-4	0.952	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1613197	3L_1613197_SNP [dm3] 3L_1613197_SNP [dm6]	C	T	2.655e^-4	0.952	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
3L	19461976	3L_19461976_SNP [dm3] 3L_19468876_SNP [dm6]	A	G	2.655e^-4	0.952	DOWNSTREAM CG32214 INTERGENIC
3L	5234005	3L_5234005_SNP [dm3] 3L_5240905_SNP [dm6]	C	T	2.655e^-4	0.952	INTRON shep
3L	8033348	3L_8033348_SNP [dm3] 3L_8040248_SNP [dm6]	A	G	2.655e^-4	0.952	INTRON nmo
3L	8033368	3L_8033368_SNP [dm3] 3L_8040268_SNP [dm6]	C	T	2.655e^-4	0.952	INTRON nmo
3L	9257439	3L_9257439_SNP [dm3] 3L_9264339_SNP [dm6]	G	A	2.655e^-4	0.952	INTRON GluRIB
3L	9282104	3L_9282104_SNP [dm3] 3L_9289004_SNP [dm6]	T	G	2.661e^-4	0.952	DOWNSTREAM GluRIB INTERGENIC
2L	13354916	2L_13354916_SNP [dm3] 2L_13354916_SNP [dm6]	T	G	2.670e^-4	0.952	UTR_5_PRIME CG9395 INTRON CG9395	TF binding site mE1_TFBS_Trl
X	11103607	X_11103607_SNP [dm3] X_11209574_SNP [dm6]	T	C	2.722e^-4	0.952	INTERGENIC
X	11103616	X_11103616_SNP [dm3] X_11209583_SNP [dm6]	A	G	2.722e^-4	0.952	INTERGENIC
2R	10029505	2R_10029505_SNP [dm3] 2R_14142000_SNP [dm6]	A	T	2.756e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	10029374	2R_10029374_DEL [dm3] 2R_14141869_DEL [dm6]	TT	T	2.769e^-4	0.952	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	11707907	2R_11707907_SNP [dm3] 2R_15820402_SNP [dm6]	C	T	2.769e^-4	0.952	NON_SYNONYMOUS_CODING CG33465 INTRON tun
3L	15621088	3L_15621088_SNP [dm3] 3L_15627988_SNP [dm6]	T	A	2.772e^-4	0.952	INTRON comm3
X	2359121	X_2359121_SNP [dm3] X_2465088_SNP [dm6]	A	G	2.777e^-4	0.952	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	13576797	X_13576797_SNP [dm3] X_13682764_SNP [dm6]	T	A	2.797e^-4	0.952	UPSTREAM CG11158 INTERGENIC
3L	13185079	3L_13185079_SNP [dm3] 3L_13191979_SNP [dm6]	C	T	2.832e^-4	0.952	INTERGENIC
X	14101213	X_14101213_DEL [dm3] X_14207180_DEL [dm6]	TT	T	2.832e^-4	0.952	INTRON l_1_G0007 & 1 other
3L	18152242	3L_18152242_SNP [dm3] 3L_18159142_SNP [dm6]	A	G	2.867e^-4	0.952	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	11988121	X_11988121_DEL [dm3] X_12094088_DEL [dm6]	ATGTGAAACGTAACTGCACT...	A	2.867e^-4	0.952	INTRON CR43960 & 1 other
2R	12363215	2R_12363215_SNP [dm3] 2R_16475710_SNP [dm6]	T	C	2.874e^-4	0.952	INTERGENIC
3L	8869987	3L_8869987_SNP [dm3] 3L_8876887_SNP [dm6]	T	A	2.874e^-4	0.952	INTRON dally
X	5746907	X_5746907_SNP [dm3] X_5852874_SNP [dm6]	C	T	2.874e^-4	0.952	UPSTREAM CG43136 INTERGENIC
3R	8852401	3R_8852401_SNP [dm3] 3R_13026679_SNP [dm6]	A	T	2.888e^-4	0.952	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
X	13576718	X_13576718_SNP [dm3] X_13682685_SNP [dm6]	C	A	2.893e^-4	0.952	UPSTREAM CG11158 INTERGENIC
2R	16500120	2R_16500120_SNP [dm3] 2R_20612615_SNP [dm6]	C	T	2.896e^-4	0.952	INTRON Hil
3L	12292811	3L_12292811_SNP [dm3] 3L_12299711_SNP [dm6]	A	T	2.896e^-4	0.952	INTERGENIC
2R	15040920	2R_15040920_SNP [dm3] 2R_19153415_SNP [dm6]	T	C	2.947e^-4	0.952	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1716575	2R_1716575_SNP [dm3] 2R_5829070_SNP [dm6]	G	A	2.978e^-4	0.952	INTRON dpr12	TF binding site mE1_TFBS_chinmo
X	12320021	X_12320021_SNP [dm3] X_12425988_SNP [dm6]	A	C	2.994e^-4	0.952	INTERGENIC
3L	15672948	3L_15672948_SNP [dm3] 3L_15679848_SNP [dm6]	T	C	2.997e^-4	0.952	SYNONYMOUS_CODING CG7304
2R	1326247	2R_1326247_SNP [dm3] 2R_5438742_SNP [dm6]	A	G	3.048e^-4	0.952	INTRON laccase2	transposable element FlyBase
2L	7166812	2L_7166812_SNP [dm3] 2L_7166812_SNP [dm6]	A	G	3.093e^-4	0.952	INTERGENIC
X	11103649	X_11103649_SNP [dm3] X_11209616_SNP [dm6]	G	A	3.193e^-4	0.952	INTERGENIC
3L	6758639	3L_6758639_SNP [dm3] 3L_6765539_SNP [dm6]	G	A	3.194e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	13576729	X_13576729_SNP [dm3] X_13682696_SNP [dm6]	T	C	3.249e^-4	0.952	UPSTREAM CG11158 INTERGENIC
2R	4166456	2R_4166456_SNP [dm3] 2R_8278951_SNP [dm6]	A	C	3.258e^-4	0.952	DOWNSTREAM CR44280 INTERGENIC
3R	11777767	3R_11777767_SNP [dm3] 3R_15952045_SNP [dm6]	G	T	3.283e^-4	0.952	UPSTREAM CG31088 INTRON Sap47	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	14346844	3R_14346844_SNP [dm3] 3R_18521122_SNP [dm6]	C	A	3.283e^-4	0.952	INTRON fru
3R	14346875	3R_14346875_SNP [dm3] 3R_18521153_SNP [dm6]	T	C	3.283e^-4	0.952	INTRON fru
3R	24787989	3R_24787989_SNP [dm3] 3R_28962267_SNP [dm6]	C	T	3.283e^-4	0.952	INTRON CG14521
2L	11947403	2L_11947403_SNP [dm3] 2L_11947403_SNP [dm6]	A	C	3.319e^-4	0.952	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	12829962	2R_12829962_SNP [dm3] 2R_16942457_SNP [dm6]	T	A	3.375e^-4	0.952	INTRON Pkc53E
2R	1715182	2R_1715182_SNP [dm3] 2R_5827677_SNP [dm6]	C	T	3.375e^-4	0.952	INTRON dpr12
2R	20130303	2R_20130303_SNP [dm3] 2R_24242780_SNP [dm6]	A	G	3.375e^-4	0.952	UPSTREAM nord INTERGENIC
2R	20130445	2R_20130445_SNP [dm3] 2R_24242922_SNP [dm6]	C	T	3.375e^-4	0.952	UPSTREAM nord INTERGENIC
X	9184441	X_9184441_SNP [dm3] X_9290408_SNP [dm6]	A	G	3.418e^-4	0.952	INTRON lz	TF binding site mE1_TFBS_Kr
2L	19385818	2L_19385818_SNP [dm3] 2L_19385818_SNP [dm6]	T	C	3.432e^-4	0.952	INTRON fon
2L	19385832	2L_19385832_SNP [dm3] 2L_19385832_SNP [dm6]	C	T	3.432e^-4	0.952	INTRON fon
2R	858966	2R_858966_SNP [dm3] 2R_4971461_SNP [dm6]	A	T	3.435e^-4	0.952	INTRON Ir41a
2R	7752086	2R_7752086_SNP [dm3] 2R_11864581_SNP [dm6]	T	C	3.480e^-4	0.952	NON_SYNONYMOUS_CODING CG42531 SYNONYMOUS_CODING CG42531 DOWNSTREAM Damm
2R	12287320	2R_12287320_SNP [dm3] 2R_16399815_SNP [dm6]	A	C	3.491e^-4	0.952	INTRON Sema-2b
3L	12218395	3L_12218395_SNP [dm3] 3L_12225295_SNP [dm6]	A	C	3.491e^-4	0.952	INTRON app
2R	10030444	2R_10030444_SNP [dm3] 2R_14142939_SNP [dm6]	C	G	3.505e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14222595	3L_14222595_SNP [dm3] 3L_14229495_SNP [dm6]	A	T	3.505e^-4	0.952	INTRON nuf
3L	14222598	3L_14222598_SNP [dm3] 3L_14229498_SNP [dm6]	C	T	3.505e^-4	0.952	INTRON nuf
3L	1611853	3L_1611853_SNP [dm3] 3L_1611853_SNP [dm6]	A	G	3.505e^-4	0.952	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1326287	2R_1326287_SNP [dm3] 2R_5438782_SNP [dm6]	T	C	3.619e^-4	0.952	INTRON laccase2	transposable element FlyBase
2L	1962977	2L_1962977_SNP [dm3] 2L_1962977_SNP [dm6]	A	G	3.669e^-4	0.952	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13712004	2L_13712004_SNP [dm3] 2L_13712004_SNP [dm6]	G	A	3.705e^-4	0.952	INTRON CG31814
2R	1716364	2R_1716364_SNP [dm3] 2R_5828859_SNP [dm6]	T	G	3.721e^-4	0.952	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11336864	3L_11336864_DEL [dm3] 3L_11343764_DEL [dm6]	AAGCGGTGCGG...	A	3.732e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	4967299	3L_4967299_SNP [dm3] 3L_4967299_SNP [dm6]	G	A	3.732e^-4	0.952	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11843407	3L_11843407_SNP [dm3] 3L_11850307_SNP [dm6]	T	C	3.786e^-4	0.952	DOWNSTREAM CG44837 INTERGENIC
2R	16883227	2R_16883227_SNP [dm3] 2R_20995722_SNP [dm6]	C	T	3.801e^-4	0.952	SYNONYMOUS_CODING Prosalpha3 UPSTREAM CG10543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	680550	3L_680550_DEL [dm3] 3L_680550_DEL [dm6]	TAT	T	3.906e^-4	0.952	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	14346884	3R_14346884_SNP [dm3] 3R_18521162_SNP [dm6]	G	A	3.936e^-4	0.952	INTRON fru
2L	4079567	2L_4079567_SNP [dm3] 2L_4079567_SNP [dm6]	T	C	3.951e^-4	0.952	SYNONYMOUS_CODING ed
2L	5551004	2L_5551004_SNP [dm3] 2L_5551004_SNP [dm6]	A	C	3.951e^-4	0.952	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	5551006	2L_5551006_SNP [dm3] 2L_5551006_SNP [dm6]	G	A	3.951e^-4	0.952	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	13031001	2L_13031001_SNP [dm3] 2L_13031001_SNP [dm6]	T	C	3.976e^-4	0.952	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	13031010	2L_13031010_SNP [dm3] 2L_13031010_SNP [dm6]	A	G	3.976e^-4	0.952	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14596230	2L_14596230_SNP [dm3] 2L_14596230_SNP [dm6]	A	G	3.986e^-4	0.952	INTERGENIC
2L	2517729	2L_2517729_SNP [dm3] 2L_2517729_SNP [dm6]	T	G	3.986e^-4	0.952	SYNONYMOUS_CODING CG3528
2R	6971069	2R_6971069_SNP [dm3] 2R_11083564_SNP [dm6]	C	T	4.000e^-4	0.952	INTRON luna
2L	7004544	2L_7004544_SNP [dm3] 2L_7004544_SNP [dm6]	A	G	4.030e^-4	0.952	INTRON uif
3L	10890602	3L_10890602_SNP [dm3] 3L_10897502_SNP [dm6]	C	A	4.030e^-4	0.952	INTRON Aps
2R	15850544	2R_15850544_SNP [dm3] 2R_19963039_SNP [dm6]	T	G	4.081e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad
X	8886716	X_8886716_SNP [dm3] X_8992683_SNP [dm6]	C	G	4.092e^-4	0.952	DOWNSTREAM mir-31b INTRON rdgA & 1 other
3L	12491065	3L_12491065_SNP [dm3] 3L_12497965_SNP [dm6]	T	C	4.109e^-4	0.952	UPSTREAM CG10657 & 1 other DOWNSTREAM CG10638 INTERGENIC
2R	15123468	2R_15123468_SNP [dm3] 2R_19235963_SNP [dm6]	G	A	4.125e^-4	0.952	SYNONYMOUS_CODING cora	TF binding site mE1_TFBS_chinmo
2L	6582744	2L_6582744_SNP [dm3] 2L_6582744_SNP [dm6]	A	T	4.133e^-4	0.952	INTRON CG11319
3L	8894003	3L_8894003_SNP [dm3] 3L_8900903_SNP [dm6]	A	T	4.145e^-4	0.952	INTRON TrpA1
3L	7007767	3L_7007767_SNP [dm3] 3L_7014667_SNP [dm6]	C	T	4.167e^-4	0.952	UTR_5_PRIME Mp INTRON Mp
2L	16801051	2L_16801051_SNP [dm3] 2L_16801051_SNP [dm6]	G	T	4.181e^-4	0.952	NON_SYNONYMOUS_CODING Ugt36Bc DOWNSTREAM CG13280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4392703	2R_4392703_SNP [dm3] 2R_8505198_SNP [dm6]	A	G	4.181e^-4	0.952	INTRON mtt
3L	17980687	3L_17980687_SNP [dm3] 3L_17987587_SNP [dm6]	G	A	4.193e^-4	0.952	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
X	2628002	X_2628002_SNP [dm3] X_2733969_SNP [dm6]	G	A	4.228e^-4	0.952	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11185597	2L_11185597_SNP [dm3] 2L_11185597_SNP [dm6]	G	A	4.232e^-4	0.952	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14884037	3L_14884037_SNP [dm3] 3L_14890937_SNP [dm6]	A	C	4.246e^-4	0.952	UPSTREAM CR45398 INTERGENIC
2R	14451771	2R_14451771_SNP [dm3] 2R_18564266_SNP [dm6]	G	C	4.262e^-4	0.952	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1884928	3L_1884928_SNP [dm3] 3L_1884928_SNP [dm6]	A	G	4.262e^-4	0.952	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	855830	2R_855830_SNP [dm3] 2R_4968325_SNP [dm6]	C	T	4.275e^-4	0.952	INTRON Ir41a	transposable element FlyBase
2R	4479172	2R_4479172_SNP [dm3] 2R_8591667_SNP [dm6]	T	C	4.300e^-4	0.952	SYNONYMOUS_CODING CG14752 UPSTREAM CG43183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10291723	3R_10291723_SNP [dm3] 3R_14466001_SNP [dm6]	C	A	4.307e^-4	0.952	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15171835	3R_15171835_SNP [dm3] 3R_19346113_SNP [dm6]	T	G	4.307e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18057858	3R_18057858_SNP [dm3] 3R_22232136_SNP [dm6]	A	T	4.307e^-4	0.952	INTRON SKIP
3R	9919515	3R_9919515_DEL [dm3] 3R_14093793_DEL [dm6]	AAAT	A	4.307e^-4	0.952	INTRON CCHa1
X	21283691	X_21283691_SNP [dm3] X_21412664_SNP [dm6]	A	G	4.326e^-4	0.952	INTERGENIC
X	21283710	X_21283710_INS [dm3] X_21412683_INS [dm6]	G	GTAACCATGG	4.326e^-4	0.952	INTERGENIC
X	21283751	X_21283751_SNP [dm3] X_21412724_SNP [dm6]	C	T	4.326e^-4	0.952	INTERGENIC
X	21283755	X_21283755_SNP [dm3] X_21412728_SNP [dm6]	T	A	4.326e^-4	0.952	INTERGENIC
X	21283758	X_21283758_SNP [dm3] X_21412731_SNP [dm6]	C	T	4.326e^-4	0.952	INTERGENIC
2R	16881978	2R_16881978_SNP [dm3] 2R_20994473_SNP [dm6]	C	T	4.358e^-4	0.952	UPSTREAM Prosalpha3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	8899333	2L_8899333_SNP [dm3] 2L_8899333_SNP [dm6]	C	T	4.412e^-4	0.952	UTR_5_PRIME CG34398 INTRON CG34398	TF binding site mE1_TFBS_Trl
2L	10471776	2L_10471776_SNP [dm3] 2L_10471776_SNP [dm6]	G	T	4.433e^-4	0.952	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12156544	X_12156544_SNP [dm3] X_12262511_SNP [dm6]	T	C	4.451e^-4	0.952	INTRON Ten-a
3L	17990568	3L_17990568_SNP [dm3] 3L_17997468_SNP [dm6]	G	T	4.465e^-4	0.952	INTRON Eip75B
3L	17990580	3L_17990580_SNP [dm3] 3L_17997480_SNP [dm6]	A	T	4.465e^-4	0.952	INTRON Eip75B
3L	17990601	3L_17990601_DEL [dm3] 3L_17997501_DEL [dm6]	TG	T	4.465e^-4	0.952	INTRON Eip75B
3L	6611858	3L_6611858_SNP [dm3] 3L_6618758_SNP [dm6]	C	A	4.465e^-4	0.952	UTR_3_PRIME CG8398 DOWNSTREAM CG8398
3L	18420998	3L_18420998_SNP [dm3] 3L_18427898_SNP [dm6]	T	C	4.466e^-4	0.952	INTERGENIC
2L	10897287	2L_10897287_SNP [dm3] 2L_10897287_SNP [dm6]	C	G	4.515e^-4	0.952	INTERGENIC
2R	1533495	2R_1533495_SNP [dm3] 2R_5645990_SNP [dm6]	C	A	4.558e^-4	0.952	INTRON CG11665	transposable element FlyBase
2L	9403046	2L_9403046_SNP [dm3] 2L_9403046_SNP [dm6]	T	A	4.569e^-4	0.952	INTRON Shawl
2L	9403049	2L_9403049_SNP [dm3] 2L_9403049_SNP [dm6]	T	G	4.569e^-4	0.952	INTRON Shawl
2L	9403054	2L_9403054_SNP [dm3] 2L_9403054_SNP [dm6]	G	A	4.569e^-4	0.952	INTRON Shawl
3L	9868529	3L_9868529_SNP [dm3] 3L_9875429_SNP [dm6]	C	T	4.594e^-4	0.952	UPSTREAM CR45406 INTERGENIC
3R	8620550	3R_8620550_SNP [dm3] 3R_12794828_SNP [dm6]	G	T	4.602e^-4	0.952	INTERGENIC
3R	24656158	3R_24656158_SNP [dm3] 3R_28830436_SNP [dm6]	C	G	4.657e^-4	0.952	INTRON WASp
2R	4392617	2R_4392617_DEL [dm3] 2R_8505112_DEL [dm6]	CTGTTGCCCAGGTC...	C	4.664e^-4	0.952	INTRON mtt
3R	14346777	3R_14346777_SNP [dm3] 3R_18521055_SNP [dm6]	G	T	4.789e^-4	0.952	INTRON fru
3L	17297728	3L_17297728_SNP [dm3] 3L_17304628_SNP [dm6]	A	G	4.794e^-4	0.952	INTERGENIC
3R	24790934	3R_24790934_SNP [dm3] 3R_28965212_SNP [dm6]	T	C	4.794e^-4	0.952	INTRON CG14521
3R	3650996	3R_3650996_SNP [dm3] 3R_7825274_SNP [dm6]	T	A	4.794e^-4	0.952	INTRON CG34384
X	11103927	X_11103927_SNP [dm3] X_11209894_SNP [dm6]	A	C	4.868e^-4	0.952	INTERGENIC
X	11102736	X_11102736_SNP [dm3] X_11208703_SNP [dm6]	C	A	4.874e^-4	0.952	INTERGENIC
X	12648505	X_12648505_SNP [dm3] X_12754472_SNP [dm6]	T	A	4.891e^-4	0.952	EXON CR44619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	24790666	3R_24790666_SNP [dm3] 3R_28964944_SNP [dm6]	C	T	4.903e^-4	0.952	INTRON CG14521
3L	18420983	3L_18420983_SNP [dm3] 3L_18427883_SNP [dm6]	G	A	4.912e^-4	0.952	INTERGENIC
2R	1212911	2R_1212911_SNP [dm3] 2R_5325406_SNP [dm6]	A	C	4.912e^-4	0.952	INTRON sxc
2L	5838673	2L_5838673_SNP [dm3] 2L_5838673_SNP [dm6]	A	G	4.938e^-4	0.952	INTRON TrissinR
3L	10303888	3L_10303888_DEL [dm3] 3L_10310788_DEL [dm6]	AGAGAGACA	A	4.968e^-4	0.952	INTERGENIC
3R	10848926	3R_10848926_SNP [dm3] 3R_15023204_SNP [dm6]	C	T	4.980e^-4	0.952	INTERGENIC
X	13011767	X_13011767_INS [dm3] X_13117734_INS [dm6]	C	CC	4.993e^-4	0.952	INTRON CG42237
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	4.999e^-4	0.952	DOWNSTREAM CG17129 INTERGENIC
3L	679759	3L_679759_SNP [dm3] 3L_679759_SNP [dm6]	A	G	4.999e^-4	0.952	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	742482	3L_742482_SNP [dm3] 3L_742482_SNP [dm6]	A	G	4.999e^-4	0.952	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8904353	2R_8904353_SNP [dm3] 2R_13016848_SNP [dm6]	T	G	5.016e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2417548	3L_2417548_SNP [dm3] 3L_2417548_SNP [dm6]	T	G	5.016e^-4	0.952	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3L	13218439	3L_13218439_SNP [dm3] 3L_13225339_SNP [dm6]	T	C	5.026e^-4	0.952	INTERGENIC
3L	6791516	3L_6791516_SNP [dm3] 3L_6798416_SNP [dm6]	G	A	5.026e^-4	0.952	INTERGENIC
2L	8391099	2L_8391099_SNP [dm3] 2L_8391099_SNP [dm6]	A	G	5.030e^-4	0.952	SYNONYMOUS_CODING CG42820
X	22407675	X_22407675_SNP [dm3] X_23005839_SNP [dm6]	A	C	5.035e^-4	0.952	INTERGENIC	transposable element FlyBase
2R	9853323	2R_9853323_SNP [dm3] 2R_13965818_SNP [dm6]	T	A	5.068e^-4	0.952	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18339262	3L_18339262_SNP [dm3] 3L_18346162_SNP [dm6]	A	T	5.068e^-4	0.952	INTERGENIC
3L	7124718	3L_7124718_SNP [dm3] 3L_7131618_SNP [dm6]	C	T	5.068e^-4	0.952	UPSTREAM Dbi DOWNSTREAM CG8628 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8198802	3L_8198802_SNP [dm3] 3L_8205702_SNP [dm6]	A	T	5.068e^-4	0.952	INTERGENIC
3L	8198811	3L_8198811_SNP [dm3] 3L_8205711_SNP [dm6]	A	G	5.068e^-4	0.952	INTERGENIC
X	16220290	X_16220290_SNP [dm3] X_16326257_SNP [dm6]	G	A	5.068e^-4	0.952	SYNONYMOUS_CODING CalpC DOWNSTREAM CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	16843899	X_16843899_SNP [dm3] X_16949866_SNP [dm6]	T	G	5.068e^-4	0.952	INTRON RhoGAP15B
X	16843906	X_16843906_SNP [dm3] X_16949873_SNP [dm6]	T	A	5.068e^-4	0.952	INTRON RhoGAP15B
X	16843907	X_16843907_SNP [dm3] X_16949874_SNP [dm6]	T	G	5.068e^-4	0.952	INTRON RhoGAP15B
2R	12551612	2R_12551612_INS [dm3] 2R_16664107_INS [dm6]	G	GG	5.095e^-4	0.952	UTR_5_PRIME Picot UPSTREAM Picot
X	11103943	X_11103943_SNP [dm3] X_11209910_SNP [dm6]	G	A	5.175e^-4	0.952	INTERGENIC
3L	16990948	3L_16990948_SNP [dm3] 3L_16997848_SNP [dm6]	G	A	5.176e^-4	0.952	SYNONYMOUS_CODING CG3764 DOWNSTREAM mir-2500	TF binding site mE1_TFBS_chinmo
3R	24787856	3R_24787856_SNP [dm3] 3R_28962134_SNP [dm6]	G	A	5.176e^-4	0.952	INTRON CG14521
3R	24787898	3R_24787898_SNP [dm3] 3R_28962176_SNP [dm6]	T	C	5.176e^-4	0.952	INTRON CG14521
3R	24787928	3R_24787928_SNP [dm3] 3R_28962206_SNP [dm6]	G	A	5.176e^-4	0.952	INTRON CG14521
3R	24788156	3R_24788156_SNP [dm3] 3R_28962434_SNP [dm6]	A	C	5.176e^-4	0.952	INTRON CG14521
X	13576732	X_13576732_SNP [dm3] X_13682699_SNP [dm6]	C	A	5.176e^-4	0.952	UPSTREAM CG11158 INTERGENIC
2L	5924613	2L_5924613_SNP [dm3] 2L_5924613_SNP [dm6]	T	C	5.200e^-4	0.952	UPSTREAM CG9016 DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13028793	2L_13028793_SNP [dm3] 2L_13028793_SNP [dm6]	T	A	5.203e^-4	0.952	INTRON CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10029516	2R_10029516_SNP [dm3] 2R_14142011_SNP [dm6]	C	T	5.248e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	16832683	X_16832683_SNP [dm3] X_16938650_SNP [dm6]	A	C	5.257e^-4	0.952	UTR_3_PRIME wus DOWNSTREAM CG4928
2L	10744561	2L_10744561_SNP [dm3] 2L_10744561_SNP [dm6]	T	C	5.293e^-4	0.952	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124
2R	17271855	2R_17271855_SNP [dm3] 2R_21384350_SNP [dm6]	T	G	5.311e^-4	0.952	UTR_5_PRIME CG10795 DOWNSTREAM EfSec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17272079	2R_17272079_SNP [dm3] 2R_21384574_SNP [dm6]	T	A	5.311e^-4	0.952	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16577868	X_16577868_SNP [dm3] X_16683835_SNP [dm6]	A	T	5.311e^-4	0.952	UTR_5_PRIME Axs DOWNSTREAM Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	6938155	2L_6938155_SNP [dm3] 2L_6938155_SNP [dm6]	A	G	5.326e^-4	0.952	SPLICE_SITE_REGION CG18304 INTRON CG18304	TF binding site mE1_TFBS_chinmo
2L	6938188	2L_6938188_SNP [dm3] 2L_6938188_SNP [dm6]	A	C	5.326e^-4	0.952	INTRON CG18304	TF binding site mE1_TFBS_chinmo
2L	6938191	2L_6938191_SNP [dm3] 2L_6938191_SNP [dm6]	T	A	5.326e^-4	0.952	INTRON CG18304	TF binding site mE1_TFBS_chinmo
2L	6938194	2L_6938194_SNP [dm3] 2L_6938194_SNP [dm6]	C	T	5.326e^-4	0.952	INTRON CG18304	TF binding site mE1_TFBS_chinmo
2L	6938782	2L_6938782_SNP [dm3] 2L_6938782_SNP [dm6]	T	C	5.326e^-4	0.952	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11586186	2R_11586186_SNP [dm3] 2R_15698681_SNP [dm6]	G	A	5.330e^-4	0.952	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	11586353	2R_11586353_SNP [dm3] 2R_15698848_SNP [dm6]	C	T	5.330e^-4	0.952	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18300302	2R_18300302_SNP [dm3] 2R_22412797_SNP [dm6]	T	G	5.330e^-4	0.952	UTR_3_PRIME qkr58E-1 DOWNSTREAM qkr58E-1 & 1 other	TF binding site BDTNP1_TFBS_Med
2R	9264253	2R_9264253_SNP [dm3] 2R_13376748_SNP [dm6]	C	T	5.330e^-4	0.952	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	14566069	3L_14566069_SNP [dm3] 3L_14572969_SNP [dm6]	G	A	5.330e^-4	0.952	INTERGENIC
3L	20615333	3L_20615333_SNP [dm3] 3L_20622233_SNP [dm6]	T	C	5.330e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16598484	X_16598484_SNP [dm3] X_16704451_SNP [dm6]	A	T	5.330e^-4	0.952	UPSTREAM CG9673 INTRON CG4678 & 1 other
X	4334831	X_4334831_SNP [dm3] X_4440798_SNP [dm6]	T	A	5.330e^-4	0.952	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	4672731	2L_4672731_SNP [dm3] 2L_4672731_SNP [dm6]	A	T	5.342e^-4	0.952	INTERGENIC
3L	15199034	3L_15199034_INS [dm3] 3L_15205934_INS [dm6]	A	AT	5.357e^-4	0.952	INTERGENIC
3L	1603839	3L_1603839_SNP [dm3] 3L_1603839_SNP [dm6]	C	G	5.363e^-4	0.952	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	8335824	3L_8335824_SNP [dm3] 3L_8342724_SNP [dm6]	A	G	5.427e^-4	0.952	UTR_3_PRIME CG7083 INTRON DNApol-alpha50
2R	859172	2R_859172_SNP [dm3] 2R_4971667_SNP [dm6]	T	A	5.484e^-4	0.952	INTRON Ir41a
2L	17431178	2L_17431178_SNP [dm3] 2L_17431178_SNP [dm6]	T	A	5.486e^-4	0.952	INTRON Dif
2L	17431180	2L_17431180_SNP [dm3] 2L_17431180_SNP [dm6]	T	A	5.486e^-4	0.952	INTRON Dif
2L	18209521	2L_18209521_SNP [dm3] 2L_18209521_SNP [dm6]	C	G	5.488e^-4	0.952	UPSTREAM CG31802 INTRON CG42750
2L	18217690	2L_18217690_SNP [dm3] 2L_18217690_SNP [dm6]	C	T	5.488e^-4	0.952	INTRON CG42750
2L	18228830	2L_18228830_SNP [dm3] 2L_18228830_SNP [dm6]	G	T	5.488e^-4	0.952	INTRON CG42750
2L	18228838	2L_18228838_SNP [dm3] 2L_18228838_SNP [dm6]	A	G	5.488e^-4	0.952	INTRON CG42750
2L	18228842	2L_18228842_SNP [dm3] 2L_18228842_SNP [dm6]	A	G	5.488e^-4	0.952	INTRON CG42750
2L	18228863	2L_18228863_SNP [dm3] 2L_18228863_SNP [dm6]	T	C	5.488e^-4	0.952	INTRON CG42750
2L	18228870	2L_18228870_SNP [dm3] 2L_18228870_SNP [dm6]	T	A	5.488e^-4	0.952	INTRON CG42750
2L	18228874	2L_18228874_SNP [dm3] 2L_18228874_SNP [dm6]	G	A	5.488e^-4	0.952	INTRON CG42750
2L	18228886	2L_18228886_SNP [dm3] 2L_18228886_SNP [dm6]	C	T	5.488e^-4	0.952	INTRON CG42750
2L	18234532	2L_18234532_SNP [dm3] 2L_18234532_SNP [dm6]	A	G	5.488e^-4	0.952	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	18235380	2L_18235380_SNP [dm3] 2L_18235380_SNP [dm6]	T	C	5.488e^-4	0.952	INTRON CG42750	TF binding site BDTNP1_TFBS_prd
2L	18235492	2L_18235492_SNP [dm3] 2L_18235492_SNP [dm6]	C	T	5.488e^-4	0.952	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19809455	2R_19809455_SNP [dm3] 2R_23921932_SNP [dm6]	A	G	5.493e^-4	0.952	INTRON kcc
2R	19809464	2R_19809464_SNP [dm3] 2R_23921941_SNP [dm6]	A	T	5.493e^-4	0.952	INTRON kcc
X	21945523	X_21945523_SNP [dm3] X_22543687_SNP [dm6]	G	A	5.508e^-4	0.952	SYNONYMOUS_CODING CG17599	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4632157	2R_4632157_SNP [dm3] 2R_8744652_SNP [dm6]	T	A	5.526e^-4	0.952	UPSTREAM CR44277 INTRON CG8740
2R	4632246	2R_4632246_SNP [dm3] 2R_8744741_SNP [dm6]	T	G	5.526e^-4	0.952	UPSTREAM CR44277 INTRON CG8740
X	11102737	X_11102737_SNP [dm3] X_11208704_SNP [dm6]	T	A	5.529e^-4	0.952	INTERGENIC
2R	5336853	2R_5336853_SNP [dm3] 2R_9449348_SNP [dm6]	T	A	5.598e^-4	0.952	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13031046	2L_13031046_SNP [dm3] 2L_13031046_SNP [dm6]	T	C	5.599e^-4	0.952	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	12207516	2L_12207516_DEL [dm3] 2L_12207516_DEL [dm6]	TT	T	5.599e^-4	0.952	UPSTREAM CG31759 INTRON aret
2L	3663566	2L_3663566_SNP [dm3] 2L_3663566_SNP [dm6]	G	T	5.688e^-4	0.952	INTRON CG34340	TF binding site mE1_TFBS_HSA
3L	6338493	3L_6338493_SNP [dm3] 3L_6345393_SNP [dm6]	C	T	5.706e^-4	0.952	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7166798	2L_7166798_SNP [dm3] 2L_7166798_SNP [dm6]	A	T	5.710e^-4	0.952	INTERGENIC
2R	10345113	2R_10345113_SNP [dm3] 2R_14457608_SNP [dm6]	G	A	5.722e^-4	0.952	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	10345129	2R_10345129_SNP [dm3] 2R_14457624_SNP [dm6]	A	T	5.722e^-4	0.952	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	10345142	2R_10345142_SNP [dm3] 2R_14457637_SNP [dm6]	A	T	5.722e^-4	0.952	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	14179640	2R_14179640_SNP [dm3] 2R_18292135_SNP [dm6]	T	A	5.722e^-4	0.952	UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10203165	3L_10203165_SNP [dm3] 3L_10210065_SNP [dm6]	A	G	5.722e^-4	0.952	INTERGENIC
3L	12665116	3L_12665116_SNP [dm3] 3L_12672016_SNP [dm6]	G	A	5.722e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8622208	X_8622208_SNP [dm3] X_8728175_SNP [dm6]	T	C	5.722e^-4	0.952	INTERGENIC
3L	4972555	3L_4972555_SNP [dm3] 3L_4972555_SNP [dm6]	G	T	5.743e^-4	0.952	INTRON Con
2L	1934271	2L_1934271_SNP [dm3] 2L_1934271_SNP [dm6]	T	C	5.753e^-4	0.952	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	5.768e^-4	0.952	INTRON luna
3R	10396169	3R_10396169_SNP [dm3] 3R_14570447_SNP [dm6]	C	T	5.791e^-4	0.952	UPSTREAM Cys DOWNSTREAM CG7987 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6460069	2R_6460069_SNP [dm3] 2R_10572564_SNP [dm6]	A	G	5.825e^-4	0.952	INTRON psq
3L	10170861	3L_10170861_SNP [dm3] 3L_10177761_SNP [dm6]	A	G	5.825e^-4	0.952	INTRON dpr10
3L	19388080	3L_19388080_SNP [dm3] 3L_19394980_SNP [dm6]	T	C	5.825e^-4	0.952	INTRON CG32206
3L	2828529	3L_2828529_SNP [dm3] 3L_2828529_SNP [dm6]	C	T	5.825e^-4	0.952	INTRON CG43444
2L	16052032	2L_16052032_SNP [dm3] 2L_16052032_SNP [dm6]	G	A	5.859e^-4	0.952	INTRON beat-Ia
3R	24787937	3R_24787937_SNP [dm3] 3R_28962215_SNP [dm6]	T	C	5.907e^-4	0.952	INTRON CG14521
3L	13185183	3L_13185183_SNP [dm3] 3L_13192083_SNP [dm6]	C	T	5.930e^-4	0.952	INTERGENIC
2L	6770306	2L_6770306_SNP [dm3] 2L_6770306_SNP [dm6]	T	C	5.994e^-4	0.952	INTRON CG11321
3L	17025878	3L_17025878_SNP [dm3] 3L_17032778_SNP [dm6]	A	C	5.995e^-4	0.952	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17025880	3L_17025880_SNP [dm3] 3L_17032780_SNP [dm6]	G	A	5.995e^-4	0.952	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4095495	3L_4095495_SNP [dm3] 3L_4095495_SNP [dm6]	T	G	5.995e^-4	0.952	INTRON CG14995
3R	27244069	3R_27244069_SNP [dm3] 3R_31418347_SNP [dm6]	A	G	5.995e^-4	0.952	INTRON Gprk2
3R	27244079	3R_27244079_SNP [dm3] 3R_31418357_SNP [dm6]	T	G	5.995e^-4	0.952	INTRON Gprk2
3R	27244080	3R_27244080_SNP [dm3] 3R_31418358_SNP [dm6]	T	G	5.995e^-4	0.952	INTRON Gprk2
3L	13249650	3L_13249650_SNP [dm3] 3L_13256550_SNP [dm6]	G	T	6.000e^-4	0.952	INTRON caps
3R	8852394	3R_8852394_SNP [dm3] 3R_13026672_SNP [dm6]	A	T	6.003e^-4	0.952	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
3R	8866140	3R_8866140_SNP [dm3] 3R_13040418_SNP [dm6]	C	A	6.003e^-4	0.952	SYNONYMOUS_CODING snk UTR_3_PRIME snk DOWNSTREAM CG11668	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4962838	3L_4962838_SNP [dm3] 3L_4962838_SNP [dm6]	G	T	6.013e^-4	0.952	INTRON Con	TF binding site mE1_TFBS_cnc
3L	4962948	3L_4962948_SNP [dm3] 3L_4962948_SNP [dm6]	T	C	6.013e^-4	0.952	INTRON Con	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	4966101	3L_4966101_SNP [dm3] 3L_4966101_SNP [dm6]	C	A	6.013e^-4	0.952	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4966114	3L_4966114_SNP [dm3] 3L_4966114_SNP [dm6]	C	T	6.013e^-4	0.952	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20621731	3L_20621731_SNP [dm3] 3L_20628631_SNP [dm6]	A	T	6.032e^-4	0.952	UPSTREAM CR44683 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	11292592	2R_11292592_SNP [dm3] 2R_15405087_SNP [dm6]	A	G	6.052e^-4	0.952	INTRON CG43729 EXON CR45020	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	6.078e^-4	0.952	INTERGENIC
2R	17976291	2R_17976291_SNP [dm3] 2R_22088786_SNP [dm6]	C	T	6.078e^-4	0.952	UPSTREAM CG13502 DOWNSTREAM CG43393 INTERGENIC
2R	10329676	2R_10329676_SNP [dm3] 2R_14442171_SNP [dm6]	A	G	6.110e^-4	0.952	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	15544591	2R_15544591_SNP [dm3] 2R_19657086_SNP [dm6]	G	C	6.110e^-4	0.952	UPSTREAM CG15125 EXON CR44214
2R	15544602	2R_15544602_SNP [dm3] 2R_19657097_SNP [dm6]	A	T	6.110e^-4	0.952	UPSTREAM CG15125 EXON CR44214
3L	9794886	3L_9794886_SNP [dm3] 3L_9801786_SNP [dm6]	A	G	6.110e^-4	0.952	SYNONYMOUS_CODING Ilp3 INTRON CG32052	TF binding site mE1_TFBS_cad
3L	14491753	3L_14491753_SNP [dm3] 3L_14498653_SNP [dm6]	T	C	6.120e^-4	0.952	INTRON bbg	TF binding site mE1_TFBS_inv
2L	17229569	2L_17229569_SNP [dm3] 2L_17229569_SNP [dm6]	T	A	6.121e^-4	0.952	INTRON beat-IIIc
3R	14346930	3R_14346930_SNP [dm3] 3R_18521208_SNP [dm6]	A	G	6.127e^-4	0.952	INTRON fru
2L	17464648	2L_17464648_SNP [dm3] 2L_17464648_SNP [dm6]	C	G	6.149e^-4	0.952	INTRON BicD
2L	5487871	2L_5487871_SNP [dm3] 2L_5487871_SNP [dm6]	G	C	6.180e^-4	0.952	DOWNSTREAM CR45287 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11103521	X_11103521_DEL [dm3] X_11209488_DEL [dm6]	ATATG	A	6.198e^-4	0.952	INTERGENIC
3R	10393352	3R_10393352_SNP [dm3] 3R_14567630_SNP [dm6]	G	C	6.221e^-4	0.952	UTR_3_PRIME CG8066 UPSTREAM CG31313 DOWNSTREAM CG8066	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	10401993	3R_10401993_SNP [dm3] 3R_14576271_SNP [dm6]	C	A	6.221e^-4	0.952	UPSTREAM CG7987 & 1 other DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7774440	3R_7774440_SNP [dm3] 3R_11948718_SNP [dm6]	C	T	6.221e^-4	0.952	UPSTREAM CG31211 INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6248062	2L_6248062_SNP [dm3] 2L_6248062_SNP [dm6]	C	A	6.232e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7893215	3L_7893215_SNP [dm3] 3L_7900115_SNP [dm6]	T	G	6.237e^-4	0.952	NON_SYNONYMOUS_CODING pbl UPSTREAM pbl INTRON pbl
3L	6791693	3L_6791693_SNP [dm3] 3L_6798593_SNP [dm6]	C	A	6.248e^-4	0.952	INTERGENIC
2L	14853251	2L_14853251_SNP [dm3] 2L_14853251_SNP [dm6]	T	A	6.254e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3103216	3L_3103216_SNP [dm3] 3L_3103216_SNP [dm6]	C	T	6.254e^-4	0.952	INTRON Cht7
2R	14514511	2R_14514511_SNP [dm3] 2R_18627006_SNP [dm6]	C	T	6.263e^-4	0.952	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2R	16288802	2R_16288802_SNP [dm3] 2R_20401297_SNP [dm6]	T	C	6.292e^-4	0.952	INTERGENIC
2R	16302185	2R_16302185_SNP [dm3] 2R_20414680_SNP [dm6]	C	A	6.292e^-4	0.952	INTERGENIC
2L	546761	2L_546761_SNP [dm3] 2L_546761_SNP [dm6]	G	A	6.323e^-4	0.952	SYNONYMOUS_CODING nAChRbeta3 UTR_3_PRIME Ets21C DOWNSTREAM Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12039628	3L_12039628_SNP [dm3] 3L_12046528_SNP [dm6]	A	T	6.340e^-4	0.952	INTRON rols
2L	2069173	2L_2069173_SNP [dm3] 2L_2069173_SNP [dm6]	C	T	6.388e^-4	0.952	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2R	1368883	2R_1368883_INS [dm3] 2R_5481378_INS [dm6]	T	TTAAGGAGGGCAAAT...	6.393e^-4	0.952	INTRON CG30440	transposable element FlyBase
2L	2558706	2L_2558706_SNP [dm3] 2L_2558706_SNP [dm6]	G	A	6.419e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15946189	3L_15946189_SNP [dm3] 3L_15953089_SNP [dm6]	C	T	6.453e^-4	0.952	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17029213	2R_17029213_SNP [dm3] 2R_21141708_SNP [dm6]	T	C	6.488e^-4	0.952	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	11408702	3L_11408702_SNP [dm3] 3L_11415602_SNP [dm6]	A	G	6.488e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20211788	X_20211788_SNP [dm3] X_20340761_SNP [dm6]	G	C	6.488e^-4	0.952	INTERGENIC
X	16835060	X_16835060_SNP [dm3] X_16941027_SNP [dm6]	C	T	6.490e^-4	0.952	UPSTREAM wus DOWNSTREAM CG13001 INTERGENIC
2R	11588679	2R_11588679_SNP [dm3] 2R_15701174_SNP [dm6]	G	C	6.505e^-4	0.952	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11588680	2R_11588680_SNP [dm3] 2R_15701175_SNP [dm6]	C	T	6.505e^-4	0.952	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1929600	3L_1929600_SNP [dm3] 3L_1929600_SNP [dm6]	T	C	6.532e^-4	0.952	INTRON Dbx
3L	1929663	3L_1929663_SNP [dm3] 3L_1929663_SNP [dm6]	T	C	6.532e^-4	0.952	INTRON Dbx
3L	1929701	3L_1929701_SNP [dm3] 3L_1929701_SNP [dm6]	A	T	6.532e^-4	0.952	INTRON Dbx
3L	1929741	3L_1929741_SNP [dm3] 3L_1929741_SNP [dm6]	G	A	6.532e^-4	0.952	INTRON Dbx
X	16832597	X_16832597_SNP [dm3] X_16938564_SNP [dm6]	A	T	6.532e^-4	0.952	UTR_3_PRIME wus DOWNSTREAM CG4928
2L	2870096	2L_2870096_SNP [dm3] 2L_2870096_SNP [dm6]	A	G	6.597e^-4	0.952	SYNONYMOUS_CODING CG8813 INTRON CG31694	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	6.628e^-4	0.952	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
X	12410948	X_12410948_SNP [dm3] X_12516915_SNP [dm6]	G	T	6.628e^-4	0.952	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2L	770277	2L_770277_SNP [dm3] 2L_770277_SNP [dm6]	G	C	6.683e^-4	0.952	INTERGENIC
2L	770291	2L_770291_SNP [dm3] 2L_770291_SNP [dm6]	T	A	6.683e^-4	0.952	INTERGENIC
2L	770295	2L_770295_SNP [dm3] 2L_770295_SNP [dm6]	T	A	6.683e^-4	0.952	INTERGENIC
2L	2863129	2L_2863129_SNP [dm3] 2L_2863129_SNP [dm6]	T	G	6.713e^-4	0.952	INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17615302	2R_17615302_SNP [dm3] 2R_21727797_SNP [dm6]	C	T	6.762e^-4	0.952	EXON CR44750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2417577	3L_2417577_SNP [dm3] 3L_2417577_SNP [dm6]	G	T	6.844e^-4	0.952	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3L	11695621	3L_11695621_SNP [dm3] 3L_11702521_SNP [dm6]	A	G	6.910e^-4	0.952	INTRON CG11658
3L	2155516	3L_2155516_SNP [dm3] 3L_2155516_SNP [dm6]	G	A	6.910e^-4	0.952	INTRON CG15822
X	22145470	X_22145470_SNP [dm3] X_22743634_SNP [dm6]	G	A	6.910e^-4	0.952	INTRON CR44997
X	22147267	X_22147267_SNP [dm3] X_22745431_SNP [dm6]	A	T	6.910e^-4	0.952	INTRON CR44997
X	22147493	X_22147493_SNP [dm3] X_22745657_SNP [dm6]	C	A	6.910e^-4	0.952	INTRON CR44997
2L	13422304	2L_13422304_SNP [dm3] 2L_13422304_SNP [dm6]	G	T	6.915e^-4	0.952	INTRON CG42784
X	3325410	X_3325410_SNP [dm3] X_3431377_SNP [dm6]	A	T	6.944e^-4	0.952	INTRON CR44999 & 1 other
X	3325411	X_3325411_SNP [dm3] X_3431378_SNP [dm6]	A	T	6.944e^-4	0.952	INTRON CR44999 & 1 other
X	5796603	X_5796603_DEL [dm3] X_5902570_DEL [dm6]	TT	T	7.042e^-4	0.952	INTRON Act5C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12028487	X_12028487_SNP [dm3] X_12134454_SNP [dm6]	T	G	7.044e^-4	0.952	INTRON Ten-a
3R	17785255	3R_17785255_SNP [dm3] 3R_21959533_SNP [dm6]	A	G	7.067e^-4	0.952	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1
3L	4278980	3L_4278980_SNP [dm3] 3L_4278980_SNP [dm6]	G	T	7.093e^-4	0.952	NON_SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4279010	3L_4279010_SNP [dm3] 3L_4279010_SNP [dm6]	A	T	7.093e^-4	0.952	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9919424	3R_9919424_SNP [dm3] 3R_14093702_SNP [dm6]	T	A	7.140e^-4	0.952	INTRON CCHa1
3L	6758630	3L_6758630_SNP [dm3] 3L_6765530_SNP [dm6]	A	G	7.204e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	7.210e^-4	0.952	INTRON CG42750
2L	18222758	2L_18222758_DEL [dm3] 2L_18222758_DEL [dm6]	ATTGATAATT	C	7.210e^-4	0.952	INTRON CG42750
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	7.239e^-4	0.952	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
X	21283475	X_21283475_SNP [dm3] X_21412448_SNP [dm6]	A	C	7.253e^-4	0.952	INTERGENIC
X	21283478	X_21283478_SNP [dm3] X_21412451_SNP [dm6]	A	G	7.253e^-4	0.952	INTERGENIC
3R	1459222	3R_1459222_SNP [dm3] 3R_5633500_SNP [dm6]	G	T	7.275e^-4	0.952	UPSTREAM CG12171 DOWNSTREAM CG31549 INTERGENIC
2R	4586527	2R_4586527_SNP [dm3] 2R_8699022_SNP [dm6]	T	G	7.279e^-4	0.952	DOWNSTREAM CG8738 INTERGENIC
X	22407673	X_22407673_SNP [dm3] X_23005837_SNP [dm6]	G	T	7.298e^-4	0.952	INTERGENIC	transposable element FlyBase
3L	11426876	3L_11426876_SNP [dm3] 3L_11433776_SNP [dm6]	G	A	7.302e^-4	0.952	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2417586	3L_2417586_SNP [dm3] 3L_2417586_SNP [dm6]	T	G	7.302e^-4	0.952	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl
2L	2861182	2L_2861182_SNP [dm3] 2L_2861182_SNP [dm6]	T	C	7.373e^-4	0.952	INTRON CG2991	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	6828203	2L_6828203_SNP [dm3] 2L_6828203_SNP [dm6]	C	T	7.373e^-4	0.952	INTRON sens-2	TF binding site mE1_TFBS_cad
X	5750650	X_5750650_SNP [dm3] X_5856617_SNP [dm6]	T	C	7.386e^-4	0.952	INTERGENIC
3L	11838019	3L_11838019_SNP [dm3] 3L_11844919_SNP [dm6]	T	G	7.394e^-4	0.952	INTERGENIC
2L	10826449	2L_10826449_SNP [dm3] 2L_10826449_SNP [dm6]	A	G	7.402e^-4	0.952	INTRON Nos
3L	1613238	3L_1613238_SNP [dm3] 3L_1613238_SNP [dm6]	T	C	7.419e^-4	0.952	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
2L	13841632	2L_13841632_SNP [dm3] 2L_13841632_SNP [dm6]	A	G	7.438e^-4	0.952	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2R	9444958	2R_9444958_SNP [dm3] 2R_13557453_SNP [dm6]	A	T	7.489e^-4	0.952	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444972	2R_9444972_SNP [dm3] 2R_13557467_SNP [dm6]	A	C	7.489e^-4	0.952	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444978	2R_9444978_SNP [dm3] 2R_13557473_SNP [dm6]	A	T	7.489e^-4	0.952	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12829695	2R_12829695_SNP [dm3] 2R_16942190_SNP [dm6]	A	G	7.490e^-4	0.952	INTRON Pkc53E
2R	12829712	2R_12829712_SNP [dm3] 2R_16942207_SNP [dm6]	C	T	7.490e^-4	0.952	INTRON Pkc53E
2R	12829739	2R_12829739_SNP [dm3] 2R_16942234_SNP [dm6]	T	C	7.490e^-4	0.952	SYNONYMOUS_CODING Pkc53E
2R	18088285	2R_18088285_SNP [dm3] 2R_22200780_SNP [dm6]	G	A	7.490e^-4	0.952	UPSTREAM CR45376 INTRON Swim
2R	18735589	2R_18735589_SNP [dm3] 2R_22848066_SNP [dm6]	C	T	7.490e^-4	0.952	SYNONYMOUS_CODING CG13531 DOWNSTREAM CG3649
2L	3663534	2L_3663534_SNP [dm3] 2L_3663534_SNP [dm6]	A	T	7.493e^-4	0.952	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24787811	3R_24787811_SNP [dm3] 3R_28962089_SNP [dm6]	G	A	7.501e^-4	0.952	INTRON CG14521
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	7.501e^-4	0.952	INTRON CG14521
3R	7107598	3R_7107598_SNP [dm3] 3R_11281876_SNP [dm6]	C	T	7.501e^-4	0.952	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9035795	3R_9035795_SNP [dm3] 3R_13210073_SNP [dm6]	A	G	7.501e^-4	0.952	SPLICE_SITE_REGION CG8483 SYNONYMOUS_CODING CG8483
X	5409516	X_5409516_SNP [dm3] X_5515483_SNP [dm6]	G	C	7.504e^-4	0.952	INTERGENIC
X	5409519	X_5409519_SNP [dm3] X_5515486_SNP [dm6]	G	A	7.504e^-4	0.952	INTERGENIC
2L	20311976	2L_20311976_SNP [dm3] 2L_20311976_SNP [dm6]	C	A	7.512e^-4	0.952	NON_SYNONYMOUS_CODING spir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11496856	2R_11496856_SNP [dm3] 2R_15609351_SNP [dm6]	C	T	7.543e^-4	0.952	INTERGENIC
X	12028438	X_12028438_SNP [dm3] X_12134405_SNP [dm6]	T	C	7.543e^-4	0.952	INTRON Ten-a
X	12028441	X_12028441_SNP [dm3] X_12134408_SNP [dm6]	A	C	7.543e^-4	0.952	INTRON Ten-a
X	12028483	X_12028483_SNP [dm3] X_12134450_SNP [dm6]	A	C	7.543e^-4	0.952	INTRON Ten-a
X	12028490	X_12028490_SNP [dm3] X_12134457_SNP [dm6]	G	A	7.543e^-4	0.952	INTRON Ten-a
X	12028496	X_12028496_SNP [dm3] X_12134463_SNP [dm6]	A	G	7.543e^-4	0.952	INTRON Ten-a
X	12028499	X_12028499_SNP [dm3] X_12134466_SNP [dm6]	A	G	7.543e^-4	0.952	INTRON Ten-a
X	12028509	X_12028509_INS [dm3] X_12134476_INS [dm6]	T	TCCTTTTTAAG...	7.543e^-4	0.952	INTRON Ten-a
X	12028511	X_12028511_SNP [dm3] X_12134478_SNP [dm6]	G	C	7.543e^-4	0.952	INTRON Ten-a
3R	26135888	3R_26135888_SNP [dm3] 3R_30310166_SNP [dm6]	A	G	7.546e^-4	0.952	INTRON hdc
3L	18084796	3L_18084796_SNP [dm3] 3L_18091696_SNP [dm6]	G	T	7.549e^-4	0.952	INTRON CG13698
2R	1904206	2R_1904206_SNP [dm3] 2R_6016701_SNP [dm6]	C	T	7.591e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	13185090	3L_13185090_SNP [dm3] 3L_13191990_SNP [dm6]	G	C	7.622e^-4	0.952	INTERGENIC
3L	13185127	3L_13185127_DEL [dm3] 3L_13192027_DEL [dm6]	AA	A	7.622e^-4	0.952	INTERGENIC
3L	13185182	3L_13185182_SNP [dm3] 3L_13192082_SNP [dm6]	G	A	7.622e^-4	0.952	INTERGENIC
2L	13031117	2L_13031117_SNP [dm3] 2L_13031117_SNP [dm6]	A	G	7.653e^-4	0.952	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	1458036	3R_1458036_SNP [dm3] 3R_5632314_SNP [dm6]	G	A	7.671e^-4	0.952	UTR_5_PRIME CG31549 UPSTREAM CG31549 DOWNSTREAM CG31551	TF binding site mE1_TFBS_cad
3L	10224499	3L_10224499_SNP [dm3] 3L_10231399_SNP [dm6]	T	A	7.674e^-4	0.952	INTERGENIC
3L	1606804	3L_1606804_SNP [dm3] 3L_1606804_SNP [dm6]	A	G	7.679e^-4	0.952	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	503899	3L_503899_SNP [dm3] 3L_503899_SNP [dm6]	G	T	7.684e^-4	0.952	INTRON klar
3L	6800662	3L_6800662_SNP [dm3] 3L_6807562_SNP [dm6]	C	T	7.684e^-4	0.952	INTERGENIC
3L	6800663	3L_6800663_SNP [dm3] 3L_6807563_SNP [dm6]	G	A	7.684e^-4	0.952	INTERGENIC
2R	9910020	2R_9910020_SNP [dm3] 2R_14022515_SNP [dm6]	G	A	7.767e^-4	0.952	INTRON mam
X	7612504	X_7612504_SNP [dm3] X_7718471_SNP [dm6]	A	T	7.767e^-4	0.952	UPSTREAM CG15478 INTERGENIC
X	3967788	X_3967788_SNP [dm3] X_4073755_SNP [dm6]	G	A	7.805e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22249562	3R_22249562_SNP [dm3] 3R_26423840_SNP [dm6]	T	G	7.814e^-4	0.952	DOWNSTREAM CG6503 INTERGENIC
3R	25065838	3R_25065838_SNP [dm3] 3R_29240116_SNP [dm6]	G	C	7.859e^-4	0.952	DOWNSTREAM CG31445 INTRON CG31427
2R	12854289	2R_12854289_SNP [dm3] 2R_16966784_SNP [dm6]	T	C	7.909e^-4	0.952	INTERGENIC
2R	12854330	2R_12854330_SNP [dm3] 2R_16966825_SNP [dm6]	A	T	7.909e^-4	0.952	INTERGENIC
2R	17878888	2R_17878888_SNP [dm3] 2R_21991383_SNP [dm6]	G	T	7.909e^-4	0.952	INTRON CG34370
2R	7611203	2R_7611203_SNP [dm3] 2R_11723698_SNP [dm6]	A	C	7.910e^-4	0.952	INTRON pyr
X	2799072	X_2799072_SNP [dm3] X_2905039_SNP [dm6]	A	T	7.936e^-4	0.952	INTRON kirre
2L	2702836	2L_2702836_SNP [dm3] 2L_2702836_SNP [dm6]	A	G	7.984e^-4	0.952	INTRON CG31690
2L	6293449	2L_6293449_SNP [dm3] 2L_6293449_SNP [dm6]	C	T	7.984e^-4	0.952	INTRON Ddr
2L	19593141	2L_19593141_SNP [dm3] 2L_19593141_SNP [dm6]	A	C	8.006e^-4	0.952	INTRON Lar
2R	18092105	2R_18092105_SNP [dm3] 2R_22204600_SNP [dm6]	G	A	8.025e^-4	0.952	SYNONYMOUS_CODING CG3292
2R	18092190	2R_18092190_SNP [dm3] 2R_22204685_SNP [dm6]	G	A	8.025e^-4	0.952	SYNONYMOUS_CODING CG3292
3L	18130991	3L_18130991_SNP [dm3] 3L_18137891_SNP [dm6]	A	C	8.025e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10252475	2L_10252475_SNP [dm3] 2L_10252475_SNP [dm6]	T	C	8.062e^-4	0.952	DOWNSTREAM CG31717 INTRON Ror
2L	16039893	2L_16039893_SNP [dm3] 2L_16039893_SNP [dm6]	A	T	8.062e^-4	0.952	UTR_3_PRIME beat-Ic
2L	16039895	2L_16039895_SNP [dm3] 2L_16039895_SNP [dm6]	C	T	8.062e^-4	0.952	UTR_3_PRIME beat-Ic
2R	15906261	2R_15906261_SNP [dm3] 2R_20018756_SNP [dm6]	T	C	8.096e^-4	0.952	INTERGENIC
3L	7116759	3L_7116759_SNP [dm3] 3L_7123659_SNP [dm6]	C	T	8.096e^-4	0.952	DOWNSTREAM form3 INTRON msl-3
3L	11368709	3L_11368709_SNP [dm3] 3L_11375609_SNP [dm6]	C	A	8.100e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4962973	3L_4962973_SNP [dm3] 3L_4962973_SNP [dm6]	T	A	8.100e^-4	0.952	INTRON Con	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12829976	2R_12829976_SNP [dm3] 2R_16942471_SNP [dm6]	C	T	8.108e^-4	0.952	SPLICE_SITE_REGION Pkc53E INTRON Pkc53E
2R	12829826	2R_12829826_SNP [dm3] 2R_16942321_SNP [dm6]	A	G	8.130e^-4	0.952	SYNONYMOUS_CODING Pkc53E
2L	1529578	2L_1529578_SNP [dm3] 2L_1529578_SNP [dm6]	G	T	8.134e^-4	0.952	INTERGENIC
3L	12900253	3L_12900253_SNP [dm3] 3L_12907153_SNP [dm6]	G	A	8.181e^-4	0.952	INTERGENIC
2L	7004267	2L_7004267_SNP [dm3] 2L_7004267_SNP [dm6]	A	T	8.202e^-4	0.952	INTRON uif	TF binding site BDTNP1_TFBS_dl
3L	4357302	3L_4357302_SNP [dm3] 3L_4357302_SNP [dm6]	G	C	8.218e^-4	0.952	INTRON Cip4
3L	4357331	3L_4357331_SNP [dm3] 3L_4357331_SNP [dm6]	G	C	8.218e^-4	0.952	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	4479169	2R_4479169_SNP [dm3] 2R_8591664_SNP [dm6]	C	G	8.221e^-4	0.952	SYNONYMOUS_CODING CG14752 UPSTREAM CG43183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9868567	3L_9868567_SNP [dm3] 3L_9875467_SNP [dm6]	G	A	8.263e^-4	0.952	UPSTREAM CR45406 INTERGENIC
X	11031628	X_11031628_SNP [dm3] X_11137595_SNP [dm6]	T	G	8.269e^-4	0.952	UPSTREAM Klp10A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	11031633	X_11031633_SNP [dm3] X_11137600_SNP [dm6]	C	A	8.269e^-4	0.952	UPSTREAM Klp10A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	19632163	X_19632163_SNP [dm3] X_19738130_SNP [dm6]	G	A	8.269e^-4	0.952	INTRON CG14234	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
3L	2463239	3L_2463239_SNP [dm3] 3L_2463239_SNP [dm6]	A	G	8.288e^-4	0.952	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8389054	2L_8389054_SNP [dm3] 2L_8389054_SNP [dm6]	A	G	8.297e^-4	0.952	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
X	16834610	X_16834610_SNP [dm3] X_16940577_SNP [dm6]	A	G	8.331e^-4	0.952	UTR_5_PRIME wus DOWNSTREAM CG13001
3R	19964611	3R_19964611_SNP [dm3] 3R_24138889_SNP [dm6]	C	A	8.357e^-4	0.952	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21851608	3R_21851608_SNP [dm3] 3R_26025886_SNP [dm6]	G	A	8.357e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18228916	2L_18228916_SNP [dm3] 2L_18228916_SNP [dm6]	T	C	8.407e^-4	0.952	INTRON CG42750
2L	2204611	2L_2204611_SNP [dm3] 2L_2204611_SNP [dm6]	C	T	8.420e^-4	0.952	INTRON CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6262613	2L_6262613_INS [dm3] 2L_6262613_INS [dm6]	T	TT	8.434e^-4	0.952	DOWNSTREAM CG13983 INTRON Ddr
2L	9487363	2L_9487363_SNP [dm3] 2L_9487363_SNP [dm6]	T	A	8.442e^-4	0.952	INTERGENIC
2L	14894747	2L_14894747_SNP [dm3] 2L_14894747_SNP [dm6]	C	T	8.444e^-4	0.952	INTERGENIC
2L	8149014	2L_8149014_SNP [dm3] 2L_8149014_SNP [dm6]	G	C	8.444e^-4	0.952	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13169940	2R_13169940_SNP [dm3] 2R_17282435_SNP [dm6]	A	G	8.466e^-4	0.952	INTRON mbl
X	21426458	X_21426458_SNP [dm3] X_21555431_SNP [dm6]	G	A	8.554e^-4	0.952	INTERGENIC	transposable element FlyBase
2L	16575310	2L_16575310_SNP [dm3] 2L_16575310_SNP [dm6]	T	C	8.598e^-4	0.952	INTRON CG42389
2L	2517732	2L_2517732_SNP [dm3] 2L_2517732_SNP [dm6]	A	G	8.598e^-4	0.952	SYNONYMOUS_CODING CG3528
2R	19104977	2R_19104977_SNP [dm3] 2R_23217454_SNP [dm6]	T	C	8.657e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8531231	2R_8531231_SNP [dm3] 2R_12643726_SNP [dm6]	C	A	8.690e^-4	0.952	INTRON CG8785
2L	8339100	2L_8339100_SNP [dm3] 2L_8339100_SNP [dm6]	G	A	8.777e^-4	0.952	INTRON CG14274
2R	14749793	2R_14749793_INS [dm3] 2R_18862288_INS [dm6]	G	GCTTG	8.778e^-4	0.952	UPSTREAM CG43069 & 1 other INTERGENIC
2R	14749798	2R_14749798_SNP [dm3] 2R_18862293_SNP [dm6]	T	G	8.778e^-4	0.952	UPSTREAM CG43069 & 1 other INTERGENIC
2R	17277532	2R_17277532_SNP [dm3] 2R_21390027_SNP [dm6]	G	A	8.778e^-4	0.952	DOWNSTREAM Acox57D-p INTRON Acox57D-d
2R	17277673	2R_17277673_SNP [dm3] 2R_21390168_SNP [dm6]	T	C	8.778e^-4	0.952	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2R	7044421	2R_7044421_SNP [dm3] 2R_11156916_SNP [dm6]	T	C	8.778e^-4	0.952	INTRON CG13229
2R	7044474	2R_7044474_SNP [dm3] 2R_11156969_SNP [dm6]	A	G	8.778e^-4	0.952	INTRON CG13229
3L	12250454	3L_12250454_SNP [dm3] 3L_12257354_SNP [dm6]	T	C	8.778e^-4	0.952	INTRON app
3L	18441814	3L_18441814_SNP [dm3] 3L_18448714_SNP [dm6]	A	T	8.778e^-4	0.952	INTERGENIC
3L	18441884	3L_18441884_SNP [dm3] 3L_18448784_SNP [dm6]	G	T	8.778e^-4	0.952	INTERGENIC
3L	18441958	3L_18441958_SNP [dm3] 3L_18448858_SNP [dm6]	A	T	8.778e^-4	0.952	INTERGENIC
3L	18441959	3L_18441959_SNP [dm3] 3L_18448859_SNP [dm6]	C	A	8.778e^-4	0.952	INTERGENIC
X	21913197	X_21913197_SNP [dm3] X_22511361_SNP [dm6]	T	A	8.778e^-4	0.952	INTERGENIC
2R	8529431	2R_8529431_SNP [dm3] 2R_12641926_SNP [dm6]	G	A	8.810e^-4	0.952	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
2R	8529497	2R_8529497_SNP [dm3] 2R_12641992_SNP [dm6]	T	A	8.810e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	8529499	2R_8529499_SNP [dm3] 2R_12641994_SNP [dm6]	T	A	8.810e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad
3L	10890575	3L_10890575_SNP [dm3] 3L_10897475_SNP [dm6]	A	T	8.810e^-4	0.952	INTRON Aps
2L	7373149	2L_7373149_SNP [dm3] 2L_7373149_SNP [dm6]	T	G	8.811e^-4	0.952	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	4425777	3L_4425777_SNP [dm3] 3L_4425777_SNP [dm6]	G	A	8.818e^-4	0.952	SYNONYMOUS_CODING CG15020
2L	12824615	2L_12824615_DEL [dm3] 2L_12824615_DEL [dm6]	TC	A	8.828e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11844195	3L_11844195_SNP [dm3] 3L_11851095_SNP [dm6]	T	G	8.832e^-4	0.952	UTR_3_PRIME CG44837
3L	11846545	3L_11846545_SNP [dm3] 3L_11853445_SNP [dm6]	A	C	8.832e^-4	0.952	INTRON CG44837
3L	11847162	3L_11847162_SNP [dm3] 3L_11854062_SNP [dm6]	C	G	8.832e^-4	0.952	INTRON CG44837
3L	11847208	3L_11847208_SNP [dm3] 3L_11854108_SNP [dm6]	A	T	8.832e^-4	0.952	INTRON CG44837
3L	11847215	3L_11847215_SNP [dm3] 3L_11854115_SNP [dm6]	G	A	8.832e^-4	0.952	INTRON CG44837
3L	11847224	3L_11847224_SNP [dm3] 3L_11854124_SNP [dm6]	A	T	8.832e^-4	0.952	INTRON CG44837
2R	4493576	2R_4493576_SNP [dm3] 2R_8606071_SNP [dm6]	T	A	8.840e^-4	0.952	INTRON rgr	TF binding site mE1_TFBS_cad
3R	25676357	3R_25676357_SNP [dm3] 3R_29850635_SNP [dm6]	C	T	8.845e^-4	0.952	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	3574810	3L_3574810_SNP [dm3] 3L_3574810_SNP [dm6]	G	C	8.876e^-4	0.952	INTRON Eip63E
3L	18149757	3L_18149757_SNP [dm3] 3L_18156657_SNP [dm6]	G	A	8.876e^-4	0.952	SYNONYMOUS_CODING CG13699
2L	18217562	2L_18217562_SNP [dm3] 2L_18217562_SNP [dm6]	A	T	8.898e^-4	0.952	INTRON CG42750
2R	17290700	2R_17290700_DEL [dm3] 2R_21403195_DEL [dm6]	CAAGGACATCCAC...	C	8.905e^-4	0.952	INTRON Sdc
X	14151226	X_14151226_SNP [dm3] X_14257193_SNP [dm6]	C	G	8.943e^-4	0.952	NON_SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11484859	2R_11484859_SNP [dm3] 2R_15597354_SNP [dm6]	C	T	8.997e^-4	0.952	INTERGENIC
2R	4451876	2R_4451876_SNP [dm3] 2R_8564371_SNP [dm6]	T	C	9.016e^-4	0.952	NON_SYNONYMOUS_CODING Cyp6a14
2R	9962951	2R_9962951_SNP [dm3] 2R_14075446_SNP [dm6]	T	A	9.023e^-4	0.952	INTRON Prosap
2R	9447161	2R_9447161_SNP [dm3] 2R_13559656_SNP [dm6]	G	A	9.054e^-4	0.952	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9447173	2R_9447173_DEL [dm3] 2R_13559668_DEL [dm6]	AA	A	9.054e^-4	0.952	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11341889	2L_11341889_SNP [dm3] 2L_11341889_SNP [dm6]	T	A	9.063e^-4	0.952	DOWNSTREAM CG14926 INTERGENIC
2L	6770573	2L_6770573_SNP [dm3] 2L_6770573_SNP [dm6]	A	T	9.063e^-4	0.952	INTRON CG11321
2L	19379352	2L_19379352_SNP [dm3] 2L_19379352_SNP [dm6]	T	C	9.078e^-4	0.952	INTERGENIC
2R	4166453	2R_4166453_SNP [dm3] 2R_8278948_SNP [dm6]	A	T	9.092e^-4	0.952	DOWNSTREAM CR44280 INTERGENIC
3L	9282099	3L_9282099_SNP [dm3] 3L_9288999_SNP [dm6]	T	A	9.107e^-4	0.952	DOWNSTREAM GluRIB INTERGENIC
2R	10346040	2R_10346040_SNP [dm3] 2R_14458535_SNP [dm6]	G	T	9.116e^-4	0.952	UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7228216	3L_7228216_SNP [dm3] 3L_7235116_SNP [dm6]	C	T	9.165e^-4	0.952	SYNONYMOUS_CODING CG14826	TF binding site mE1_TFBS_HSA
3L	7894693	3L_7894693_SNP [dm3] 3L_7901593_SNP [dm6]	A	G	9.171e^-4	0.952	INTRON pbl
3L	7894698	3L_7894698_DEL [dm3] 3L_7901598_DEL [dm6]	AA	G	9.171e^-4	0.952	INTRON pbl
X	22306534	X_22306534_SNP [dm3] X_22904698_SNP [dm6]	T	G	9.171e^-4	0.952	INTERGENIC
3L	7794248	3L_7794248_SNP [dm3] 3L_7801148_SNP [dm6]	C	G	9.185e^-4	0.952	INTRON CG32369
3L	9547680	3L_9547680_DEL [dm3] 3L_9554580_DEL [dm6]	TT	T	9.191e^-4	0.952	INTRON CG42673
3L	4297269	3L_4297269_SNP [dm3] 3L_4297269_SNP [dm6]	A	G	9.192e^-4	0.952	INTRON dyl
3R	10392825	3R_10392825_SNP [dm3] 3R_14567103_SNP [dm6]	T	A	9.207e^-4	0.952	DOWNSTREAM CG14852 & 1 other INTRON CG31313	TF binding site mE1_TFBS_cad
3R	10392836	3R_10392836_SNP [dm3] 3R_14567114_SNP [dm6]	T	G	9.207e^-4	0.952	DOWNSTREAM CG14852 & 1 other INTRON CG31313	TF binding site mE1_TFBS_cad
3L	16033447	3L_16033447_SNP [dm3] 3L_16040347_SNP [dm6]	A	T	9.218e^-4	0.952	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	9369593	2L_9369593_SNP [dm3] 2L_9369593_SNP [dm6]	A	G	9.223e^-4	0.952	DOWNSTREAM Shawl INTERGENIC
X	19371875	X_19371875_SNP [dm3] X_19477842_SNP [dm6]	G	C	9.224e^-4	0.952	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14077026	3L_14077026_SNP [dm3] 3L_14083926_SNP [dm6]	C	A	9.283e^-4	0.952	DOWNSTREAM btl INTRON CG8100
3L	14077035	3L_14077035_SNP [dm3] 3L_14083935_SNP [dm6]	A	T	9.283e^-4	0.952	DOWNSTREAM btl INTRON CG8100
3L	11941298	3L_11941298_SNP [dm3] 3L_11948198_SNP [dm6]	G	T	9.325e^-4	0.952	NON_SYNONYMOUS_CODING CG7252	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18230382	2L_18230382_SNP [dm3] 2L_18230382_SNP [dm6]	A	G	9.338e^-4	0.952	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19541685	X_19541685_SNP [dm3] X_19647652_SNP [dm6]	A	C	9.347e^-4	0.952	NON_SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	19343973	2R_19343973_SNP [dm3] 2R_23456450_SNP [dm6]	C	G	9.394e^-4	0.952	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
2R	19343996	2R_19343996_SNP [dm3] 2R_23456473_SNP [dm6]	G	C	9.394e^-4	0.952	UTR_5_PRIME CG43795	TF binding site mE1_TFBS_chinmo
2R	19344030	2R_19344030_SNP [dm3] 2R_23456507_SNP [dm6]	G	C	9.394e^-4	0.952	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo
3L	1136228	3L_1136228_SNP [dm3] 3L_1136228_SNP [dm6]	T	G	9.394e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
X	16841571	X_16841571_SNP [dm3] X_16947538_SNP [dm6]	A	G	9.394e^-4	0.952	DOWNSTREAM CG13000 INTRON RhoGAP15B
2L	7167889	2L_7167889_DEL [dm3] 2L_7167889_DEL [dm6]	GA	T	9.407e^-4	0.952	INTERGENIC
2R	11496861	2R_11496861_DEL [dm3] 2R_15609356_DEL [dm6]	AA	A	9.452e^-4	0.952	INTERGENIC
2R	18839070	2R_18839070_SNP [dm3] 2R_22951547_SNP [dm6]	T	C	9.452e^-4	0.952	DOWNSTREAM CR32835 EXON CR32835
2R	6103343	2R_6103343_SNP [dm3] 2R_10215838_SNP [dm6]	T	G	9.466e^-4	0.952	INTRON Hr46 & 1 other
X	13445665	X_13445665_SNP [dm3] X_13551632_SNP [dm6]	C	T	9.466e^-4	0.952	DOWNSTREAM CG11816 INTERGENIC
X	21283482	X_21283482_SNP [dm3] X_21412455_SNP [dm6]	T	C	9.489e^-4	0.952	INTERGENIC
X	21283840	X_21283840_SNP [dm3] X_21412813_SNP [dm6]	A	G	9.489e^-4	0.952	INTERGENIC
2L	770067	2L_770067_INS [dm3] 2L_770067_INS [dm6]	T	TTACTAT	9.574e^-4	0.952	INTERGENIC
2L	770213	2L_770213_SNP [dm3] 2L_770213_SNP [dm6]	A	G	9.574e^-4	0.952	INTERGENIC
2L	770255	2L_770255_SNP [dm3] 2L_770255_SNP [dm6]	T	C	9.574e^-4	0.952	INTERGENIC
2L	770287	2L_770287_SNP [dm3] 2L_770287_SNP [dm6]	G	A	9.574e^-4	0.952	INTERGENIC
2R	7766302	2R_7766302_SNP [dm3] 2R_11878797_SNP [dm6]	A	G	9.596e^-4	0.952	SYNONYMOUS_CODING CG13185
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	9.596e^-4	0.952	INTERGENIC
3R	17144624	3R_17144624_SNP [dm3] 3R_21318902_SNP [dm6]	C	G	9.596e^-4	0.952	UTR_3_PRIME CG16791
3R	17144636	3R_17144636_SNP [dm3] 3R_21318914_SNP [dm6]	A	T	9.596e^-4	0.952	UTR_3_PRIME CG16791
3R	8093014	3R_8093014_SNP [dm3] 3R_12267292_SNP [dm6]	A	C	9.596e^-4	0.952	INTRON svp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	892538	3L_892538_INS [dm3] 3L_892538_INS [dm6]	A	ATA	9.609e^-4	0.952	UTR_3_PRIME CG32479	TF binding site mE1_TFBS_HSA
X	17816210	X_17816210_SNP [dm3] X_17922177_SNP [dm6]	T	G	9.609e^-4	0.952	INTRON CG6847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19385845	2L_19385845_SNP [dm3] 2L_19385845_SNP [dm6]	C	A	9.610e^-4	0.952	INTRON fon
3R	22260868	3R_22260868_SNP [dm3] 3R_26435146_SNP [dm6]	T	G	9.693e^-4	0.952	INTERGENIC
3R	22260918	3R_22260918_SNP [dm3] 3R_26435196_SNP [dm6]	A	C	9.693e^-4	0.952	INTERGENIC
3L	1438784	3L_1438784_SNP [dm3] 3L_1438784_SNP [dm6]	A	C	9.721e^-4	0.952	UPSTREAM SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	14632585	X_14632585_SNP [dm3] X_14738552_SNP [dm6]	T	G	9.722e^-4	0.952	INTRON NetB
X	14632607	X_14632607_SNP [dm3] X_14738574_SNP [dm6]	C	G	9.722e^-4	0.952	INTRON NetB
X	14632618	X_14632618_SNP [dm3] X_14738585_SNP [dm6]	C	T	9.722e^-4	0.952	INTRON NetB
X	14632626	X_14632626_SNP [dm3] X_14738593_SNP [dm6]	T	C	9.722e^-4	0.952	INTRON NetB
X	14632630	X_14632630_SNP [dm3] X_14738597_SNP [dm6]	C	T	9.722e^-4	0.952	INTRON NetB
2L	1677424	2L_1677424_SNP [dm3] 2L_1677424_SNP [dm6]	G	A	9.722e^-4	0.952	INTRON chinmo
3R	22249633	3R_22249633_SNP [dm3] 3R_26423911_SNP [dm6]	T	C	9.728e^-4	0.952	DOWNSTREAM CG6503 INTERGENIC
3R	25162263	3R_25162263_SNP [dm3] 3R_29336541_SNP [dm6]	A	G	9.728e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10030354	2R_10030354_SNP [dm3] 2R_14142849_SNP [dm6]	A	G	9.748e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10030518	2R_10030518_SNP [dm3] 2R_14143013_SNP [dm6]	T	C	9.748e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18120553	2R_18120553_SNP [dm3] 2R_22233048_SNP [dm6]	C	T	9.748e^-4	0.952	INTERGENIC
3L	4985538	3L_4985538_SNP [dm3] 3L_4985538_SNP [dm6]	C	T	9.748e^-4	0.952	INTRON Con
3L	4985540	3L_4985540_SNP [dm3] 3L_4985540_SNP [dm6]	T	C	9.748e^-4	0.952	INTRON Con
3R	15171827	3R_15171827_SNP [dm3] 3R_19346105_SNP [dm6]	C	T	9.748e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	27152141	3R_27152141_SNP [dm3] 3R_31326419_SNP [dm6]	T	G	9.748e^-4	0.952	INTRON CG34347
3R	5739864	3R_5739864_SNP [dm3] 3R_9914142_SNP [dm6]	C	A	9.748e^-4	0.952	INTRON Glut4EF
3R	5739879	3R_5739879_SNP [dm3] 3R_9914157_SNP [dm6]	G	C	9.748e^-4	0.952	INTRON Glut4EF
3R	9682700	3R_9682700_SNP [dm3] 3R_13856978_SNP [dm6]	C	T	9.748e^-4	0.952	INTERGENIC
X	11102360	X_11102360_SNP [dm3] X_11208327_SNP [dm6]	T	A	9.748e^-4	0.952	INTERGENIC
X	21280834	X_21280834_SNP [dm3] X_21409807_SNP [dm6]	T	C	9.748e^-4	0.952	EXON CR45003
3R	13669846	3R_13669846_SNP [dm3] 3R_17844124_SNP [dm6]	A	C	9.807e^-4	0.952	INTRON tinc
2L	13312041	2L_13312041_SNP [dm3] 2L_13312041_SNP [dm6]	G	A	9.817e^-4	0.952	INTRON CG43778
2L	13312083	2L_13312083_SNP [dm3] 2L_13312083_SNP [dm6]	A	T	9.817e^-4	0.952	INTRON CG43778
3L	10537663	3L_10537663_SNP [dm3] 3L_10544563_SNP [dm6]	T	G	9.818e^-4	0.952	INTRON A2bp1
2L	5595847	2L_5595847_SNP [dm3] 2L_5595847_SNP [dm6]	T	C	9.842e^-4	0.952	UPSTREAM CG18266 INTERGENIC
3R	9035756	3R_9035756_DEL [dm3] 3R_13210034_DEL [dm6]	AATAATTAACATAATTA...	A	9.849e^-4	0.952	INTRON CG8483
2L	19385897	2L_19385897_SNP [dm3] 2L_19385897_SNP [dm6]	C	A	9.857e^-4	0.952	INTRON fon
X	4569195	X_4569195_SNP [dm3] X_4675162_SNP [dm6]	C	T	9.883e^-4	0.952	INTRON rap
2L	17269770	2L_17269770_SNP [dm3] 2L_17269770_SNP [dm6]	T	C	9.887e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11466293	3L_11466293_SNP [dm3] 3L_11473193_SNP [dm6]	G	A	9.887e^-4	0.952	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11466307	3L_11466307_SNP [dm3] 3L_11473207_SNP [dm6]	A	T	9.887e^-4	0.952	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11466313	3L_11466313_INS [dm3] 3L_11473213_INS [dm6]	A	AAAA	9.887e^-4	0.952	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11466597	3L_11466597_SNP [dm3] 3L_11473497_SNP [dm6]	C	G	9.887e^-4	0.952	SYNONYMOUS_CODING Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11466759	3L_11466759_SNP [dm3] 3L_11473659_SNP [dm6]	G	A	9.887e^-4	0.952	SYNONYMOUS_CODING Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7725376	2R_7725376_SNP [dm3] 2R_11837871_SNP [dm6]	A	T	9.898e^-4	0.952	INTRON Sobp	TF binding site BDTNP1_TFBS_prd
X	14379696	X_14379696_SNP [dm3] X_14485663_SNP [dm6]	C	T	9.898e^-4	0.952	INTERGENIC
3L	1950467	3L_1950467_INS [dm3] 3L_1950467_INS [dm6]	A	AA	9.936e^-4	0.952	UTR_3_PRIME mv DOWNSTREAM Cnb
2R	11415031	2R_11415031_SNP [dm3] 2R_15527526_SNP [dm6]	C	T	9.942e^-4	0.952	INTRON Khc-73	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11415065	2R_11415065_SNP [dm3] 2R_15527560_SNP [dm6]	G	A	9.942e^-4	0.952	INTRON Khc-73	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	8934777	X_8934777_SNP [dm3] X_9040744_SNP [dm6]	A	C	9.942e^-4	0.952	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
X	8934813	X_8934813_SNP [dm3] X_9040780_SNP [dm6]	A	T	9.942e^-4	0.952	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
X	8934822	X_8934822_SNP [dm3] X_9040789_SNP [dm6]	T	A	9.942e^-4	0.952	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
X	8934823	X_8934823_SNP [dm3] X_9040790_SNP [dm6]	G	A	9.942e^-4	0.952	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
X	8934829	X_8934829_SNP [dm3] X_9040796_SNP [dm6]	A	G	9.942e^-4	0.952	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
2R	17675638	2R_17675638_INS [dm3] 2R_21788133_INS [dm6]	C	CT	9.962e^-4	0.952	INTERGENIC
3L	15157969	3L_15157969_SNP [dm3] 3L_15164869_SNP [dm6]	A	C	9.974e^-4	0.952	INTERGENIC

By genomic position
Variant impact
Gene name

Climb_Week4 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results