DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.405e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0374

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	2.8307	0.0925

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1554 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2920865	X_2920865_SNP [dm3] X_3026832_SNP [dm6]	T	C	3.943e^-6	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	21731074	3R_21731074_SNP [dm3] 3R_25905352_SNP [dm6]	T	G	6.332e^-6	0.971	DOWNSTREAM CR43259 INTRON CR43259
X	6131505	X_6131505_SNP [dm3] X_6237472_SNP [dm6]	C	T	6.334e^-6	0.971	UTR_5_PRIME CG14445
2R	1387657	2R_1387657_SNP [dm3] 2R_5500152_SNP [dm6]	G	A	7.468e^-6	0.971	INTRON CG30438
2R	1387659	2R_1387659_SNP [dm3] 2R_5500154_SNP [dm6]	A	T	7.468e^-6	0.971	INTRON CG30438
3R	21731114	3R_21731114_SNP [dm3] 3R_25905392_SNP [dm6]	C	T	7.813e^-6	0.971	DOWNSTREAM CR43259 INTRON CR43259
3R	18536272	3R_18536272_SNP [dm3] 3R_22710550_SNP [dm6]	C	T	7.885e^-6	0.971	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3L	8902611	3L_8902611_SNP [dm3] 3L_8909511_SNP [dm6]	C	A	8.196e^-6	0.971	NON_SYNONYMOUS_CODING mfr START_GAINED mfr UTR_5_PRIME mfr
3L	8902612	3L_8902612_SNP [dm3] 3L_8909512_SNP [dm6]	G	A	8.196e^-6	0.971	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
2R	5589488	2R_5589488_SNP [dm3] 2R_9701983_SNP [dm6]	A	T	9.198e^-6	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6131500	X_6131500_SNP [dm3] X_6237467_SNP [dm6]	C	T	9.386e^-6	0.971	START_GAINED CG14445 UTR_5_PRIME CG14445
3R	21731122	3R_21731122_SNP [dm3] 3R_25905400_SNP [dm6]	G	C	1.022e^-5	0.971	DOWNSTREAM CR43259 INTRON CR43259
2R	14594137	2R_14594137_SNP [dm3] 2R_18706632_SNP [dm6]	G	A	1.210e^-5	0.971	SYNONYMOUS_CODING CG15073 DOWNSTREAM Sik3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4844209	3L_4844209_DEL [dm3] 3L_4844209_DEL [dm6]	CAGGGTATACAG...	TC	1.348e^-5	0.971	INTERGENIC
2L	4441337	2L_4441337_SNP [dm3] 2L_4441337_SNP [dm6]	A	C	1.544e^-5	0.971	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8535192	2R_8535192_SNP [dm3] 2R_12647687_SNP [dm6]	C	A	1.650e^-5	0.971	INTRON CG8785
2L	8998844	2L_8998844_SNP [dm3] 2L_8998844_SNP [dm6]	A	T	1.872e^-5	0.971	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6140310	2R_6140310_SNP [dm3] 2R_10252805_SNP [dm6]	A	G	1.911e^-5	0.971	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2R	14595128	2R_14595128_SNP [dm3] 2R_18707623_SNP [dm6]	T	C	2.043e^-5	0.971	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
X	2920682	X_2920682_SNP [dm3] X_3026649_SNP [dm6]	C	T	2.182e^-5	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	2920298	X_2920298_SNP [dm3] X_3026265_SNP [dm6]	A	G	2.566e^-5	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	2920684	X_2920684_SNP [dm3] X_3026651_SNP [dm6]	C	T	2.723e^-5	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	24966802	3R_24966802_SNP [dm3] 3R_29141080_SNP [dm6]	A	G	2.794e^-5	0.971	INTRON CG14516
2L	19636480	2L_19636480_SNP [dm3] 2L_19636480_SNP [dm6]	G	A	3.059e^-5	0.971	INTRON Lar
2L	19636675	2L_19636675_SNP [dm3] 2L_19636675_SNP [dm6]	T	G	3.059e^-5	0.971	INTRON Lar
2R	14612464	2R_14612464_SNP [dm3] 2R_18724959_SNP [dm6]	G	C	3.110e^-5	0.971	INTRON Hs3st-A
3R	27007138	3R_27007138_SNP [dm3] 3R_31181416_SNP [dm6]	A	G	3.196e^-5	0.971	SYNONYMOUS_CODING mesh
3L	2563078	3L_2563078_SNP [dm3] 3L_2563078_SNP [dm6]	G	T	3.213e^-5	0.971	INTRON msn
3L	2166648	3L_2166648_SNP [dm3] 3L_2166648_SNP [dm6]	T	G	3.217e^-5	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2340579	3L_2340579_SNP [dm3] 3L_2340579_SNP [dm6]	T	A	3.287e^-5	0.971	INTRON MsR1	TF binding site mE1_TFBS_inv
3L	8902519	3L_8902519_SNP [dm3] 3L_8909419_SNP [dm6]	T	C	3.619e^-5	0.971	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
2R	13167385	2R_13167385_SNP [dm3] 2R_17279880_SNP [dm6]	A	G	3.724e^-5	0.971	INTRON mbl
X	18085554	X_18085554_SNP [dm3] X_18191521_SNP [dm6]	A	T	3.870e^-5	0.971	INTRON Frq2
X	15742905	X_15742905_SNP [dm3] X_15848872_SNP [dm6]	A	G	4.175e^-5	0.971	DOWNSTREAM UBL3 INTRON sun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10636238	3L_10636238_SNP [dm3] 3L_10643138_SNP [dm6]	C	T	4.276e^-5	0.971	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
2R	17616555	2R_17616555_SNP [dm3] 2R_21729050_SNP [dm6]	T	A	4.381e^-5	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23187116	3R_23187116_SNP [dm3] 3R_27361394_SNP [dm6]	T	C	4.473e^-5	0.971	INTRON CG42534	TF binding site mE1_TFBS_chinmo
2R	14595125	2R_14595125_SNP [dm3] 2R_18707620_SNP [dm6]	G	A	4.565e^-5	0.971	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
3L	2423839	3L_2423839_SNP [dm3] 3L_2423839_SNP [dm6]	T	C	4.655e^-5	0.971	INTRON CG45186
3R	24966904	3R_24966904_SNP [dm3] 3R_29141182_SNP [dm6]	T	A	4.754e^-5	0.971	INTRON CG14516
2L	8268560	2L_8268560_SNP [dm3] 2L_8268560_SNP [dm6]	A	G	4.857e^-5	0.971	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17616634	2R_17616634_SNP [dm3] 2R_21729129_SNP [dm6]	T	A	4.926e^-5	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26543185	3R_26543185_SNP [dm3] 3R_30717463_SNP [dm6]	G	A	5.115e^-5	0.971	INTERGENIC
3L	8902483	3L_8902483_SNP [dm3] 3L_8909383_SNP [dm6]	G	T	5.170e^-5	0.971	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
3R	19725573	3R_19725573_SNP [dm3] 3R_23899851_SNP [dm6]	G	A	5.233e^-5	0.971	INTRON sba	TF binding site mE1_TFBS_chinmo
3L	2415768	3L_2415768_SNP [dm3] 3L_2415768_SNP [dm6]	C	T	5.360e^-5	0.971	INTRON CG45186
2R	16235937	2R_16235937_SNP [dm3] 2R_20348432_SNP [dm6]	A	T	5.759e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC
2R	16235938	2R_16235938_SNP [dm3] 2R_20348433_SNP [dm6]	G	T	5.759e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC
2R	16235942	2R_16235942_INS [dm3] 2R_20348437_INS [dm6]	T	TCTACT	5.759e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16235944	2R_16235944_SNP [dm3] 2R_20348439_SNP [dm6]	A	T	5.759e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2989040	3L_2989040_SNP [dm3] 3L_2989040_SNP [dm6]	A	G	5.801e^-5	0.971	INTERGENIC
2R	16173467	2R_16173467_SNP [dm3] 2R_20285962_SNP [dm6]	G	C	5.913e^-5	0.971	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3R	23186898	3R_23186898_SNP [dm3] 3R_27361176_SNP [dm6]	G	T	5.944e^-5	0.971	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	13894735	3R_13894735_SNP [dm3] 3R_18069013_SNP [dm6]	A	G	5.962e^-5	0.971	INTERGENIC
X	18086547	X_18086547_SNP [dm3] X_18192514_SNP [dm6]	T	C	5.973e^-5	0.971	SYNONYMOUS_CODING Frq2
3L	10608513	3L_10608513_SNP [dm3] 3L_10615413_SNP [dm6]	A	C	6.018e^-5	0.971	INTERGENIC
2R	2479146	2R_2479146_SNP [dm3] 2R_6591641_SNP [dm6]	A	T	6.120e^-5	0.971	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12904333	X_12904333_SNP [dm3] X_13010300_SNP [dm6]	G	A	6.218e^-5	0.971	INTRON rad
X	2920593	X_2920593_SNP [dm3] X_3026560_SNP [dm6]	C	T	6.259e^-5	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2R	6787083	2R_6787083_INS [dm3] 2R_10899578_INS [dm6]	T	TGT	6.483e^-5	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	11279067	X_11279067_SNP [dm3] X_11385034_SNP [dm6]	A	T	6.512e^-5	0.971	INTRON dlg1
3R	23502672	3R_23502672_SNP [dm3] 3R_27676950_SNP [dm6]	T	A	6.563e^-5	0.971	UTR_3_PRIME unc80 UPSTREAM CG5590	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA
2R	17340540	2R_17340540_SNP [dm3] 2R_21453035_SNP [dm6]	T	A	6.787e^-5	0.971	INTRON Sdc
3L	10366808	3L_10366808_SNP [dm3] 3L_10373708_SNP [dm6]	A	T	6.792e^-5	0.971	INTERGENIC
X	5704094	X_5704094_SNP [dm3] X_5810061_SNP [dm6]	T	C	6.792e^-5	0.971	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
X	5704180	X_5704180_SNP [dm3] X_5810147_SNP [dm6]	A	G	6.792e^-5	0.971	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
2R	14187663	2R_14187663_SNP [dm3] 2R_18300158_SNP [dm6]	C	G	6.870e^-5	0.971	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16235907	2R_16235907_SNP [dm3] 2R_20348402_SNP [dm6]	A	T	6.870e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC
2R	16235941	2R_16235941_SNP [dm3] 2R_20348436_SNP [dm6]	C	T	6.870e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC
2R	16235969	2R_16235969_SNP [dm3] 2R_20348464_SNP [dm6]	T	C	6.870e^-5	0.971	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6786723	2R_6786723_INS [dm3] 2R_10899218_INS [dm6]	G	GAAGCACCTTGTAAA...	6.870e^-5	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3L	12546540	3L_12546540_SNP [dm3] 3L_12553440_SNP [dm6]	T	C	6.870e^-5	0.971	INTRON sowah
3L	12546600	3L_12546600_SNP [dm3] 3L_12553500_SNP [dm6]	C	A	6.870e^-5	0.971	INTRON sowah
3L	2421111	3L_2421111_SNP [dm3] 3L_2421111_SNP [dm6]	G	C	6.870e^-5	0.971	INTRON CG45186
3L	2424224	3L_2424224_SNP [dm3] 3L_2424224_SNP [dm6]	A	G	6.870e^-5	0.971	INTRON CG45186
3L	3891061	3L_3891061_SNP [dm3] 3L_3891061_SNP [dm6]	C	T	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	3891062	3L_3891062_SNP [dm3] 3L_3891062_SNP [dm6]	C	T	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	3891065	3L_3891065_INS [dm3] 3L_3891065_INS [dm6]	T	TTTATTT	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	3891067	3L_3891067_MNP [dm3] 3L_3891067_MNP [dm6]	GGA	TAT	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	3891073	3L_3891073_SNP [dm3] 3L_3891073_SNP [dm6]	C	A	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	3891079	3L_3891079_INS [dm3] 3L_3891079_INS [dm6]	T	TT	6.870e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
X	14195932	X_14195932_SNP [dm3] X_14301899_SNP [dm6]	G	T	6.870e^-5	0.971	INTERGENIC
X	21064066	X_21064066_SNP [dm3] X_21193039_SNP [dm6]	C	T	6.870e^-5	0.971	UPSTREAM CG14579 INTERGENIC
3L	14078008	3L_14078008_SNP [dm3] 3L_14084908_SNP [dm6]	T	C	6.883e^-5	0.971	SYNONYMOUS_CODING CG8100
2R	17616629	2R_17616629_SNP [dm3] 2R_21729124_SNP [dm6]	A	G	7.026e^-5	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6786716	2R_6786716_SNP [dm3] 2R_10899211_SNP [dm6]	C	A	7.109e^-5	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3R	23390630	3R_23390630_SNP [dm3] 3R_27564908_SNP [dm6]	G	A	7.131e^-5	0.971	UTR_3_PRIME wdb DOWNSTREAM wdb
3R	23390707	3R_23390707_SNP [dm3] 3R_27564985_SNP [dm6]	A	T	7.131e^-5	0.971	UTR_3_PRIME wdb DOWNSTREAM wdb
X	21994369	X_21994369_SNP [dm3] X_22592533_SNP [dm6]	G	C	7.160e^-5	0.971	INTRON Cda4	transposable element FlyBase
2L	3519038	2L_3519038_SNP [dm3] 2L_3519038_SNP [dm6]	T	C	7.175e^-5	0.971	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6213142	2R_6213142_SNP [dm3] 2R_10325637_SNP [dm6]	C	A	7.185e^-5	0.971	INTRON CG42732
3L	9716674	3L_9716674_SNP [dm3] 3L_9723574_SNP [dm6]	C	T	7.202e^-5	0.971	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6138867	3L_6138867_SNP [dm3] 3L_6145767_SNP [dm6]	A	G	7.306e^-5	0.971	UPSTREAM Lcp65Ab2 DOWNSTREAM Lcp65Ac INTERGENIC
3L	6138876	3L_6138876_SNP [dm3] 3L_6145776_SNP [dm6]	A	C	7.306e^-5	0.971	UPSTREAM Lcp65Ab2 DOWNSTREAM Lcp65Ac INTERGENIC
X	2920539	X_2920539_SNP [dm3] X_3026506_SNP [dm6]	A	G	7.424e^-5	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	4441707	2L_4441707_SNP [dm3] 2L_4441707_SNP [dm6]	G	C	7.504e^-5	0.971	SYNONYMOUS_CODING Sfp24F UPSTREAM CG15431 & 1 other	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Trl
2L	16187537	2L_16187537_SNP [dm3] 2L_16187537_SNP [dm6]	A	T	7.537e^-5	0.971	UTR_3_PRIME Ca-alpha1D INTRON Ca-alpha1D
3L	9716347	3L_9716347_SNP [dm3] 3L_9723247_SNP [dm6]	T	G	7.635e^-5	0.971	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5380340	3L_5380340_SNP [dm3] 3L_5387240_SNP [dm6]	C	T	7.720e^-5	0.971	INTERGENIC
3R	25915643	3R_25915643_SNP [dm3] 3R_30089921_SNP [dm6]	C	A	7.814e^-5	0.971	INTRON sima	TF binding site mE1_TFBS_Trl
X	14196685	X_14196685_SNP [dm3] X_14302652_SNP [dm6]	C	G	8.086e^-5	0.971	INTERGENIC
3R	18593828	3R_18593828_SNP [dm3] 3R_22768106_SNP [dm6]	T	C	8.187e^-5	0.971	UPSTREAM CG13841 DOWNSTREAM CG43091 & 1 other INTRON Usp12-46 & 1 other
2R	17150108	2R_17150108_INS [dm3] 2R_21262603_INS [dm6]	C	CGGGCC	8.274e^-5	0.971	INTRON Rgk3
2R	14836625	2R_14836625_SNP [dm3] 2R_18949120_SNP [dm6]	A	T	8.275e^-5	0.971	INTRON sano
2L	4360549	2L_4360549_SNP [dm3] 2L_4360549_SNP [dm6]	C	A	8.298e^-5	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22238844	3L_22238844_SNP [dm3] 3L_22245744_SNP [dm6]	C	T	8.360e^-5	0.971	UTR_3_PRIME olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4094871	2L_4094871_SNP [dm3] 2L_4094871_SNP [dm6]	C	G	8.415e^-5	0.971	INTRON ed	TF binding site BDTNP1_TFBS_twi
3L	3751336	3L_3751336_SNP [dm3] 3L_3751336_SNP [dm6]	A	G	8.444e^-5	0.971	INTRON CG32264
3R	13372862	3R_13372862_SNP [dm3] 3R_17547140_SNP [dm6]	G	A	8.672e^-5	0.971	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21994343	X_21994343_DEL [dm3] X_22592507_DEL [dm6]	ATATATATGTA...	A	8.702e^-5	0.971	INTRON Cda4	transposable element FlyBase
3R	11548635	3R_11548635_SNP [dm3] 3R_15722913_SNP [dm6]	T	G	8.852e^-5	0.971	INTERGENIC
3R	11548652	3R_11548652_SNP [dm3] 3R_15722930_SNP [dm6]	T	A	8.852e^-5	0.971	INTERGENIC
2R	6132262	2R_6132262_SNP [dm3] 2R_10244757_SNP [dm6]	T	C	8.901e^-5	0.971	INTRON Hdc
3L	17243001	3L_17243001_SNP [dm3] 3L_17249901_SNP [dm6]	T	C	8.930e^-5	0.971	INTRON CR43870	TF binding site mE1_TFBS_inv
2L	4873459	2L_4873459_SNP [dm3] 2L_4873459_SNP [dm6]	C	T	8.965e^-5	0.971	INTRON pog
2R	6212603	2R_6212603_SNP [dm3] 2R_10325098_SNP [dm6]	G	A	8.996e^-5	0.971	INTRON CG42732
2R	6212619	2R_6212619_SNP [dm3] 2R_10325114_SNP [dm6]	T	C	8.996e^-5	0.971	INTRON CG42732
3R	23390623	3R_23390623_SNP [dm3] 3R_27564901_SNP [dm6]	T	C	9.029e^-5	0.971	UTR_3_PRIME wdb DOWNSTREAM wdb
2L	8268561	2L_8268561_SNP [dm3] 2L_8268561_SNP [dm6]	A	G	9.117e^-5	0.971	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16433882	X_16433882_SNP [dm3] X_16539849_SNP [dm6]	A	G	9.300e^-5	0.971	SYNONYMOUS_CODING CG9903	TF binding site mE1_TFBS_chinmo
3L	2710143	3L_2710143_SNP [dm3] 3L_2710143_SNP [dm6]	T	G	9.342e^-5	0.971	INTRON Fife
3L	3891064	3L_3891064_SNP [dm3] 3L_3891064_SNP [dm6]	A	T	9.342e^-5	0.971	DOWNSTREAM CR45422 INTERGENIC
3L	20495211	3L_20495211_SNP [dm3] 3L_20502111_SNP [dm6]	G	A	9.374e^-5	0.971	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3L	6124345	3L_6124345_INS [dm3] 3L_6131245_INS [dm6]	T	TA	9.394e^-5	0.971	UTR_3_PRIME Cpr65Au UPSTREAM Lcp65Ag3 DOWNSTREAM Cpr65Au
3L	5943460	3L_5943460_SNP [dm3] 3L_5950360_SNP [dm6]	G	A	9.440e^-5	0.971	START_GAINED CG33993 UTR_5_PRIME CG33993	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20098801	2R_20098801_SNP [dm3] 2R_24211278_SNP [dm6]	G	A	9.494e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	5125823	2R_5125823_SNP [dm3] 2R_9238318_SNP [dm6]	T	A	9.604e^-5	0.971	INTRON hig & 1 other
2L	16187540	2L_16187540_SNP [dm3] 2L_16187540_SNP [dm6]	G	A	9.664e^-5	0.971	UTR_3_PRIME Ca-alpha1D INTRON Ca-alpha1D
X	9411856	X_9411856_SNP [dm3] X_9517823_SNP [dm6]	A	G	9.706e^-5	0.971	INTRON CG32700
2L	4995676	2L_4995676_SNP [dm3] 2L_4995676_SNP [dm6]	A	G	9.745e^-5	0.971	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1781710	3L_1781710_SNP [dm3] 3L_1781710_SNP [dm6]	A	G	9.749e^-5	0.971	INTRON alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15540673	X_15540673_INS [dm3] X_15646640_INS [dm6]	A	ATCAGTTGACCATA...	9.796e^-5	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	10924592	3R_10924592_SNP [dm3] 3R_15098870_SNP [dm6]	C	T	9.830e^-5	0.971	SYNONYMOUS_CODING CG42788	TF binding site BDTNP1_TFBS_sna
3L	7185666	3L_7185666_SNP [dm3] 3L_7192566_SNP [dm6]	T	C	9.869e^-5	0.971	INTERGENIC
2R	14082355	2R_14082355_SNP [dm3] 2R_18194850_SNP [dm6]	A	C	9.960e^-5	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7203860	3L_7203860_SNP [dm3] 3L_7210760_SNP [dm6]	T	A	9.991e^-5	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19636310	2L_19636310_SNP [dm3] 2L_19636310_SNP [dm6]	C	T	1.001e^-4	0.971	INTRON Lar
2L	19636320	2L_19636320_SNP [dm3] 2L_19636320_SNP [dm6]	A	G	1.001e^-4	0.971	INTRON Lar
3L	10437247	3L_10437247_SNP [dm3] 3L_10444147_SNP [dm6]	C	A	1.010e^-4	0.971	INTERGENIC
X	15540648	X_15540648_SNP [dm3] X_15646615_SNP [dm6]	G	A	1.010e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17374192	2R_17374192_SNP [dm3] 2R_21486687_SNP [dm6]	T	C	1.019e^-4	0.971	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
3R	4848228	3R_4848228_SNP [dm3] 3R_9022506_SNP [dm6]	G	C	1.024e^-4	0.971	SYNONYMOUS_CODING neur EXON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2509145	3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6]	A	T	1.033e^-4	0.971	INTRON Spn
2R	14086932	2R_14086932_SNP [dm3] 2R_18199427_SNP [dm6]	C	G	1.045e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25621427	3R_25621427_SNP [dm3] 3R_29795705_SNP [dm6]	C	T	1.061e^-4	0.971	UTR_3_PRIME CG7837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6138897	3L_6138897_SNP [dm3] 3L_6145797_SNP [dm6]	A	G	1.065e^-4	0.971	UPSTREAM Lcp65Ab2 DOWNSTREAM Lcp65Ac INTERGENIC
2R	17340849	2R_17340849_SNP [dm3] 2R_21453344_SNP [dm6]	G	T	1.076e^-4	0.971	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	4619392	2L_4619392_INS [dm3] 2L_4619392_INS [dm6]	A	ATTGTA	1.081e^-4	0.971	UPSTREAM CR44609 INTERGENIC
3R	16028733	3R_16028733_SNP [dm3] 3R_20203011_SNP [dm6]	A	G	1.089e^-4	0.971	INTERGENIC
2L	4163968	2L_4163968_SNP [dm3] 2L_4163968_SNP [dm6]	T	C	1.114e^-4	0.971	DOWNSTREAM Or24a INTERGENIC
2R	20629358	2R_20629358_SNP [dm3] 2R_24741835_SNP [dm6]	T	C	1.128e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3959847	2L_3959847_SNP [dm3] 2L_3959847_SNP [dm6]	T	C	1.132e^-4	0.971	INTRON fred
2R	9660385	2R_9660385_SNP [dm3] 2R_13772880_SNP [dm6]	G	C	1.137e^-4	0.971	INTRON Cpr50Ca
2R	6787234	2R_6787234_SNP [dm3] 2R_10899729_SNP [dm6]	T	C	1.160e^-4	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11035935	3L_11035935_SNP [dm3] 3L_11042835_SNP [dm6]	G	T	1.168e^-4	0.971	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	15328874	3R_15328874_SNP [dm3] 3R_19503152_SNP [dm6]	T	C	1.184e^-4	0.971	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2R	5603436	2R_5603436_SNP [dm3] 2R_9715931_SNP [dm6]	T	C	1.186e^-4	0.971	UTR_3_PRIME dap DOWNSTREAM sqa
2L	4095701	2L_4095701_SNP [dm3] 2L_4095701_SNP [dm6]	C	A	1.189e^-4	0.971	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	27174809	3R_27174809_SNP [dm3] 3R_31349087_SNP [dm6]	G	T	1.190e^-4	0.971	INTRON CG34347	regulatory region REDfly_CRMs
3L	15053503	3L_15053503_SNP [dm3] 3L_15060403_SNP [dm6]	A	G	1.193e^-4	0.971	DOWNSTREAM CG13460 INTRON Sytbeta
2R	6045829	2R_6045829_INS [dm3] 2R_10158324_INS [dm6]	T	TT	1.208e^-4	0.971	UTR_5_PRIME mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2639900	3L_2639900_SNP [dm3] 3L_2639900_SNP [dm6]	C	T	1.217e^-4	0.971	INTRON MEP-1 & 1 other	TF binding site mE1_TFBS_chinmo
2R	6181284	2R_6181284_SNP [dm3] 2R_10293779_SNP [dm6]	C	T	1.228e^-4	0.971	INTRON CAP	TF binding site mE1_TFBS_sens
2L	4650212	2L_4650212_SNP [dm3] 2L_4650212_SNP [dm6]	T	A	1.232e^-4	0.971	INTERGENIC
3L	5435931	3L_5435931_SNP [dm3] 3L_5442831_SNP [dm6]	A	G	1.235e^-4	0.971	DOWNSTREAM CG34391 INTERGENIC
2R	5125795	2R_5125795_SNP [dm3] 2R_9238290_SNP [dm6]	T	A	1.249e^-4	0.971	INTRON hig & 1 other
3L	19793351	3L_19793351_SNP [dm3] 3L_19800251_SNP [dm6]	G	T	1.299e^-4	0.971	NON_SYNONYMOUS_CODING CG14102 INTRON Ir76a
3L	6038499	3L_6038499_SNP [dm3] 3L_6045399_SNP [dm6]	G	A	1.301e^-4	0.971	INTERGENIC
3L	9232427	3L_9232427_SNP [dm3] 3L_9239327_SNP [dm6]	A	T	1.304e^-4	0.971	INTERGENIC
X	2821095	X_2821095_SNP [dm3] X_2927062_SNP [dm6]	A	G	1.319e^-4	0.971	INTRON kirre & 1 other
3L	6707405	3L_6707405_SNP [dm3] 3L_6714305_SNP [dm6]	T	G	1.328e^-4	0.971	UTR_3_PRIME ple
X	14992893	X_14992893_SNP [dm3] X_15098860_SNP [dm6]	G	A	1.348e^-4	0.971	SYNONYMOUS_CODING Rab3-GEF	TF binding site mE1_TFBS_chinmo
X	13129066	X_13129066_SNP [dm3] X_13235033_SNP [dm6]	A	T	1.369e^-4	0.971	DOWNSTREAM CG32639 INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	15540200	X_15540200_SNP [dm3] X_15646167_SNP [dm6]	A	G	1.373e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	4464684	X_4464684_SNP [dm3] X_4570651_SNP [dm6]	T	A	1.384e^-4	0.971	DOWNSTREAM CG12684 INTRON CR32773
2R	14082957	2R_14082957_SNP [dm3] 2R_18195452_SNP [dm6]	G	A	1.391e^-4	0.971	INTERGENIC
2L	4995752	2L_4995752_SNP [dm3] 2L_4995752_SNP [dm6]	T	C	1.411e^-4	0.971	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18470410	3R_18470410_SNP [dm3] 3R_22644688_SNP [dm6]	A	T	1.431e^-4	0.971	INTRON CG45058
X	11746660	X_11746660_DEL [dm3] X_11852627_DEL [dm6]	TT	T	1.434e^-4	0.971	UPSTREAM p24-1 DOWNSTREAM CG10347 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17647666	2R_17647666_SNP [dm3] 2R_21760161_SNP [dm6]	T	C	1.437e^-4	0.971	INTERGENIC
2L	11618697	2L_11618697_SNP [dm3] 2L_11618697_SNP [dm6]	A	C	1.451e^-4	0.971	INTRON kek2
2R	12912358	2R_12912358_SNP [dm3] 2R_17024853_SNP [dm6]	C	A	1.460e^-4	0.971	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9992058	2L_9992058_SNP [dm3] 2L_9992058_SNP [dm6]	G	A	1.468e^-4	0.971	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10437255	3L_10437255_SNP [dm3] 3L_10444155_SNP [dm6]	C	T	1.481e^-4	0.971	INTERGENIC
X	8653223	X_8653223_SNP [dm3] X_8759190_SNP [dm6]	T	C	1.494e^-4	0.971	INTRON Lim1	TF binding site mE1_TFBS_chinmo
2R	1417877	2R_1417877_SNP [dm3] 2R_5530372_SNP [dm6]	G	A	1.496e^-4	0.971	INTRON CG30438	transposable element FlyBase
3L	3751421	3L_3751421_SNP [dm3] 3L_3751421_SNP [dm6]	T	G	1.502e^-4	0.971	INTRON CG32264
3L	6954561	3L_6954561_SNP [dm3] 3L_6961461_SNP [dm6]	A	C	1.503e^-4	0.971	INTRON sgl
3L	19857366	3L_19857366_SNP [dm3] 3L_19864266_SNP [dm6]	A	G	1.509e^-4	0.971	INTERGENIC	transposable element FlyBase
X	11950510	X_11950510_SNP [dm3] X_12056477_SNP [dm6]	T	C	1.530e^-4	0.971	NON_SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
3R	13890166	3R_13890166_SNP [dm3] 3R_18064444_SNP [dm6]	G	C	1.538e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1317442	2L_1317442_SNP [dm3] 2L_1317442_SNP [dm6]	G	A	1.552e^-4	0.971	INTERGENIC
3R	15397174	3R_15397174_SNP [dm3] 3R_19571452_SNP [dm6]	A	C	1.561e^-4	0.971	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6786990	2R_6786990_SNP [dm3] 2R_10899485_SNP [dm6]	T	C	1.565e^-4	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21994364	X_21994364_SNP [dm3] X_22592528_SNP [dm6]	A	G	1.565e^-4	0.971	INTRON Cda4	transposable element FlyBase
3L	12205334	3L_12205334_SNP [dm3] 3L_12212234_SNP [dm6]	G	C	1.579e^-4	0.971	SYNONYMOUS_CODING app DOWNSTREAM app INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3519146	2L_3519146_SNP [dm3] 2L_3519146_SNP [dm6]	A	G	1.587e^-4	0.971	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12114276	2R_12114276_SNP [dm3] 2R_16226771_SNP [dm6]	G	T	1.595e^-4	0.971	UTR_5_PRIME CG15706 UPSTREAM CG15706 INTRON CG15706 & 1 other
3R	9861978	3R_9861978_SNP [dm3] 3R_14036256_SNP [dm6]	G	A	1.605e^-4	0.971	UTR_5_PRIME CG9922 UPSTREAM CG9922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4095702	2L_4095702_SNP [dm3] 2L_4095702_SNP [dm6]	T	C	1.609e^-4	0.971	INTRON ed	TF binding site BDTNP1_TFBS_twi
3L	6103275	3L_6103275_SNP [dm3] 3L_6110175_SNP [dm6]	G	C	1.620e^-4	0.971	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	4095973	2L_4095973_SNP [dm3] 2L_4095973_SNP [dm6]	G	C	1.623e^-4	0.971	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14082361	2R_14082361_SNP [dm3] 2R_18194856_SNP [dm6]	T	A	1.627e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5232097	3L_5232097_SNP [dm3] 3L_5238997_SNP [dm6]	G	A	1.628e^-4	0.971	INTRON shep
3L	15085129	3L_15085129_SNP [dm3] 3L_15092029_SNP [dm6]	T	C	1.634e^-4	0.971	SYNONYMOUS_CODING CG6945 INTRON cp309	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2989253	3L_2989253_SNP [dm3] 3L_2989253_SNP [dm6]	T	G	1.635e^-4	0.971	INTERGENIC
X	18085946	X_18085946_SNP [dm3] X_18191913_SNP [dm6]	T	G	1.636e^-4	0.971	INTRON Frq2	TF binding site mE1_TFBS_chinmo
2R	14116088	2R_14116088_SNP [dm3] 2R_18228583_SNP [dm6]	C	T	1.638e^-4	0.971	EXON CR45310 & 1 other
3R	25915654	3R_25915654_SNP [dm3] 3R_30089932_SNP [dm6]	A	C	1.654e^-4	0.971	INTRON sima	TF binding site mE1_TFBS_Trl
3R	18173981	3R_18173981_SNP [dm3] 3R_22348259_SNP [dm6]	C	A	1.674e^-4	0.971	INTERGENIC
X	13298329	X_13298329_SNP [dm3] X_13404296_SNP [dm6]	C	T	1.680e^-4	0.971	UPSTREAM GstT4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4076888	3L_4076888_SNP [dm3] 3L_4076888_SNP [dm6]	T	C	1.683e^-4	0.971	INTRON Gad1
3R	17357979	3R_17357979_SNP [dm3] 3R_21532257_SNP [dm6]	C	T	1.697e^-4	0.971	EXON CR43372
3R	15482963	3R_15482963_SNP [dm3] 3R_19657241_SNP [dm6]	A	G	1.697e^-4	0.971	UPSTREAM CG6184 INTRON CG6184	TF binding site BDTNP1_TFBS_dl
3R	14602906	3R_14602906_SNP [dm3] 3R_18777184_SNP [dm6]	A	C	1.702e^-4	0.971	INTRON CG7720
2R	17616650	2R_17616650_SNP [dm3] 2R_21729145_SNP [dm6]	G	A	1.712e^-4	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
X	16896426	X_16896426_SNP [dm3] X_17002393_SNP [dm6]	C	A	1.727e^-4	0.971	INTRON CG45002
3L	2989069	3L_2989069_SNP [dm3] 3L_2989069_SNP [dm6]	T	C	1.729e^-4	0.971	INTERGENIC
3R	23157518	3R_23157518_SNP [dm3] 3R_27331796_SNP [dm6]	A	T	1.735e^-4	0.971	UPSTREAM CG3330 INTERGENIC
3R	17843006	3R_17843006_SNP [dm3] 3R_22017284_SNP [dm6]	G	A	1.741e^-4	0.971	INTRON CG6439	TF binding site mE1_TFBS_sens
2R	20629336	2R_20629336_DEL [dm3] 2R_24741813_DEL [dm6]	ATA	A	1.767e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17616639	2R_17616639_SNP [dm3] 2R_21729134_SNP [dm6]	G	A	1.776e^-4	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6851126	2L_6851126_SNP [dm3] 2L_6851126_SNP [dm6]	G	T	1.790e^-4	0.971	INTERGENIC
3L	2761913	3L_2761913_SNP [dm3] 3L_2761913_SNP [dm6]	T	A	1.792e^-4	0.971	UPSTREAM Mrtf INTRON Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9112800	X_9112800_SNP [dm3] X_9218767_SNP [dm6]	A	T	1.793e^-4	0.971	SPLICE_SITE_REGION t INTRON t	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2919881	X_2919881_SNP [dm3] X_3025848_SNP [dm6]	A	G	1.805e^-4	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	18660104	2L_18660104_SNP [dm3] 2L_18660104_SNP [dm6]	G	C	1.824e^-4	0.971	INTRON MESR3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10905511	2L_10905511_SNP [dm3] 2L_10905511_SNP [dm6]	T	A	1.828e^-4	0.971	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	12457996	X_12457996_SNP [dm3] X_12563963_SNP [dm6]	T	A	1.847e^-4	0.971	INTRON CG43921
3R	19140110	3R_19140110_SNP [dm3] 3R_23314388_SNP [dm6]	A	G	1.850e^-4	0.971	UPSTREAM pnt INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12543392	3L_12543392_SNP [dm3] 3L_12550292_SNP [dm6]	C	G	1.859e^-4	0.971	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10832108	3R_10832108_SNP [dm3] 3R_15006386_SNP [dm6]	A	T	1.859e^-4	0.971	INTERGENIC
2L	10676566	2L_10676566_SNP [dm3] 2L_10676566_SNP [dm6]	A	C	1.866e^-4	0.971	UPSTREAM CG17104 INTERGENIC
3R	13811081	3R_13811081_SNP [dm3] 3R_17985359_SNP [dm6]	A	T	1.867e^-4	0.971	INTRON cpo
2R	16585596	2R_16585596_SNP [dm3] 2R_20698091_SNP [dm6]	A	T	1.889e^-4	0.971	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2426390	3L_2426390_SNP [dm3] 3L_2426390_SNP [dm6]	C	T	1.889e^-4	0.971	INTRON CG45186	TF binding site mE1_TFBS_bab1
3R	17843007	3R_17843007_SNP [dm3] 3R_22017285_SNP [dm6]	A	C	1.889e^-4	0.971	INTRON CG6439	TF binding site mE1_TFBS_sens
3R	21284298	3R_21284298_SNP [dm3] 3R_25458576_SNP [dm6]	C	T	1.889e^-4	0.971	INTRON Fur1
3L	3522822	3L_3522822_SNP [dm3] 3L_3522822_SNP [dm6]	C	T	1.903e^-4	0.971	DOWNSTREAM CR45043 INTRON Eip63E
3L	11035936	3L_11035936_INS [dm3] 3L_11042836_INS [dm6]	T	TTAATCTTAAG...	1.904e^-4	0.971	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	8775781	2L_8775781_SNP [dm3] 2L_8775781_SNP [dm6]	A	G	1.906e^-4	0.971	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6141806	2R_6141806_SNP [dm3] 2R_10254301_SNP [dm6]	A	T	1.908e^-4	0.971	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27146970	3R_27146970_SNP [dm3] 3R_31321248_SNP [dm6]	C	T	1.911e^-4	0.971	INTRON CG34347
2L	8758730	2L_8758730_SNP [dm3] 2L_8758730_SNP [dm6]	G	C	1.919e^-4	0.971	INTERGENIC
2L	3519203	2L_3519203_SNP [dm3] 2L_3519203_SNP [dm6]	G	A	1.927e^-4	0.971	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8881922	2L_8881922_SNP [dm3] 2L_8881922_SNP [dm6]	T	C	1.958e^-4	0.971	INTERGENIC
2R	6787104	2R_6787104_SNP [dm3] 2R_10899599_SNP [dm6]	G	C	1.961e^-4	0.971	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25613477	3R_25613477_SNP [dm3] 3R_29787755_SNP [dm6]	A	C	1.962e^-4	0.971	INTRON kay
3R	25613486	3R_25613486_DEL [dm3] 3R_29787764_DEL [dm6]	TAGGAGAAT	T	1.962e^-4	0.971	INTRON kay
3R	25590316	3R_25590316_SNP [dm3] 3R_29764594_SNP [dm6]	A	C	1.965e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6139997	2R_6139997_SNP [dm3] 2R_10252492_SNP [dm6]	C	T	1.969e^-4	0.971	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	15487224	3R_15487224_SNP [dm3] 3R_19661502_SNP [dm6]	A	T	1.973e^-4	0.971	INTRON ort
2L	9605960	2L_9605960_SNP [dm3] 2L_9605960_SNP [dm6]	T	C	1.981e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26504450	3R_26504450_SNP [dm3] 3R_30678728_SNP [dm6]	A	G	1.983e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	6568786	3L_6568786_SNP [dm3] 3L_6575686_SNP [dm6]	C	T	2.029e^-4	0.971	INTRON CG18769 & 1 other
2R	17785336	2R_17785336_SNP [dm3] 2R_21897831_SNP [dm6]	C	T	2.035e^-4	0.971	INTRON Fili
3R	13950139	3R_13950139_SNP [dm3] 3R_18124417_SNP [dm6]	A	C	2.043e^-4	0.971	INTRON sr
3L	10067524	3L_10067524_SNP [dm3] 3L_10074424_SNP [dm6]	T	A	2.044e^-4	0.971	INTRON dpr6
2R	14421839	2R_14421839_SNP [dm3] 2R_18534334_SNP [dm6]	C	T	2.047e^-4	0.971	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
3L	2163873	3L_2163873_SNP [dm3] 3L_2163873_SNP [dm6]	A	T	2.056e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2163879	3L_2163879_SNP [dm3] 3L_2163879_SNP [dm6]	T	C	2.056e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	11630130	3L_11630130_SNP [dm3] 3L_11637030_SNP [dm6]	G	C	2.077e^-4	0.971	INTRON CG32091
X	8430554	X_8430554_SNP [dm3] X_8536521_SNP [dm6]	T	C	2.100e^-4	0.971	INTRON Nrg
3L	2666434	3L_2666434_SNP [dm3] 3L_2666434_SNP [dm6]	T	G	2.111e^-4	0.971	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
3R	24964838	3R_24964838_SNP [dm3] 3R_29139116_SNP [dm6]	C	T	2.129e^-4	0.971	UTR_5_PRIME CG14516 UPSTREAM CG14516 & 1 other INTRON CG14516	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	2919989	X_2919989_SNP [dm3] X_3025956_SNP [dm6]	C	A	2.140e^-4	0.971	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17860957	2R_17860957_SNP [dm3] 2R_21973452_SNP [dm6]	A	T	2.150e^-4	0.971	NON_SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8902518	3L_8902518_SNP [dm3] 3L_8909418_SNP [dm6]	G	A	2.151e^-4	0.971	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
3L	9716343	3L_9716343_SNP [dm3] 3L_9723243_SNP [dm6]	A	C	2.159e^-4	0.971	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3518561	2L_3518561_SNP [dm3] 2L_3518561_SNP [dm6]	C	T	2.162e^-4	0.971	SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8746255	3L_8746255_SNP [dm3] 3L_8753155_SNP [dm6]	T	A	2.167e^-4	0.971	UPSTREAM Fhos INTERGENIC
X	3032887	X_3032887_SNP [dm3] X_3138854_SNP [dm6]	G	A	2.214e^-4	0.971	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18085964	X_18085964_DEL [dm3] X_18191931_DEL [dm6]	AC	A	2.227e^-4	0.971	INTRON Frq2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3522489	3L_3522489_SNP [dm3] 3L_3522489_SNP [dm6]	C	G	2.238e^-4	0.971	DOWNSTREAM CR45043 INTRON Eip63E
3L	1439447	3L_1439447_SNP [dm3] 3L_1439447_SNP [dm6]	T	A	2.252e^-4	0.971	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	5232071	3L_5232071_SNP [dm3] 3L_5238971_SNP [dm6]	C	A	2.255e^-4	0.971	INTRON shep
3L	19314444	3L_19314444_SNP [dm3] 3L_19321344_SNP [dm6]	A	G	2.261e^-4	0.971	INTRON pip
2R	6046528	2R_6046528_SNP [dm3] 2R_10159023_SNP [dm6]	T	G	2.268e^-4	0.971	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	15449062	3R_15449062_SNP [dm3] 3R_19623340_SNP [dm6]	A	T	2.273e^-4	0.971	UTR_5_PRIME CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3L	10238007	3L_10238007_SNP [dm3] 3L_10244907_SNP [dm6]	T	C	2.282e^-4	0.971	UPSTREAM Or67c INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	16911714	2R_16911714_SNP [dm3] 2R_21024209_SNP [dm6]	G	A	2.291e^-4	0.971	SYNONYMOUS_CODING RIC-3 UTR_3_PRIME RIC-3 UPSTREAM CG9350
3R	21861845	3R_21861845_SNP [dm3] 3R_26036123_SNP [dm6]	G	T	2.292e^-4	0.971	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4425324	2L_4425324_SNP [dm3] 2L_4425324_SNP [dm6]	T	G	2.310e^-4	0.971	INTRON CG15431
3L	11527270	3L_11527270_SNP [dm3] 3L_11534170_SNP [dm6]	T	C	2.320e^-4	0.971	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2630461	3L_2630461_SNP [dm3] 3L_2630461_SNP [dm6]	A	T	2.330e^-4	0.971	UPSTREAM Pxn EXON CR45660
3R	26597934	3R_26597934_SNP [dm3] 3R_30772212_SNP [dm6]	G	A	2.335e^-4	0.971	INTRON zfh1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9656328	2R_9656328_SNP [dm3] 2R_13768823_SNP [dm6]	C	G	2.371e^-4	0.971	INTERGENIC
3R	10304650	3R_10304650_SNP [dm3] 3R_14478928_SNP [dm6]	G	A	2.374e^-4	0.971	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	15027991	2R_15027991_SNP [dm3] 2R_19140486_SNP [dm6]	A	G	2.382e^-4	0.971	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15027995	2R_15027995_SNP [dm3] 2R_19140490_SNP [dm6]	A	G	2.382e^-4	0.971	NON_SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12243843	3R_12243843_SNP [dm3] 3R_16418121_SNP [dm6]	T	C	2.385e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15313450	3L_15313450_SNP [dm3] 3L_15320350_SNP [dm6]	T	C	2.386e^-4	0.971	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15027994	2R_15027994_SNP [dm3] 2R_19140489_SNP [dm6]	T	C	2.394e^-4	0.971	SYNONYMOUS_CODING CG15111	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6045788	2R_6045788_SNP [dm3] 2R_10158283_SNP [dm6]	G	A	2.406e^-4	0.971	UTR_5_PRIME mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	6180252	2R_6180252_SNP [dm3] 2R_10292747_SNP [dm6]	G	C	2.407e^-4	0.971	NON_SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
3R	12506549	3R_12506549_SNP [dm3] 3R_16680827_SNP [dm6]	C	T	2.413e^-4	0.971	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	4121274	3L_4121274_SNP [dm3] 3L_4121274_SNP [dm6]	T	A	2.425e^-4	0.971	INTRON Chd64
2L	9878430	2L_9878430_SNP [dm3] 2L_9878430_SNP [dm6]	G	A	2.436e^-4	0.971	INTRON nAChRalpha6
2R	20207527	2R_20207527_SNP [dm3] 2R_24320004_SNP [dm6]	A	G	2.452e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20414710	3R_20414710_SNP [dm3] 3R_24588988_SNP [dm6]	G	A	2.471e^-4	0.971	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	19463700	3L_19463700_SNP [dm3] 3L_19470600_SNP [dm6]	A	G	2.471e^-4	0.971	INTERGENIC	transposable element FlyBase
3L	20495555	3L_20495555_SNP [dm3] 3L_20502455_SNP [dm6]	G	A	2.478e^-4	0.971	DOWNSTREAM CG18281 INTRON CG32425
2R	8690149	2R_8690149_SNP [dm3] 2R_12802644_SNP [dm6]	T	A	2.488e^-4	0.971	DOWNSTREAM sca INTERGENIC
2R	8535037	2R_8535037_SNP [dm3] 2R_12647532_SNP [dm6]	C	G	2.495e^-4	0.971	INTRON CG8785
3R	19187385	3R_19187385_SNP [dm3] 3R_23361663_SNP [dm6]	T	C	2.516e^-4	0.971	DOWNSTREAM CG4408 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20029872	3L_20029872_SNP [dm3] 3L_20036772_SNP [dm6]	C	A	2.517e^-4	0.971	INTERGENIC
3L	12380860	3L_12380860_SNP [dm3] 3L_12387760_SNP [dm6]	A	G	2.530e^-4	0.971	UTR_5_PRIME Ncc69 INTRON Ncc69
3L	2424562	3L_2424562_SNP [dm3] 3L_2424562_SNP [dm6]	C	G	2.537e^-4	0.971	INTRON CG45186
3L	6699997	3L_6699997_SNP [dm3] 3L_6706897_SNP [dm6]	T	A	2.569e^-4	0.971	UPSTREAM CG8519 INTRON CG8519
3L	13056383	3L_13056383_SNP [dm3] 3L_13063283_SNP [dm6]	T	A	2.572e^-4	0.971	DOWNSTREAM CG34428 INTRON CG34429
3L	18736619	3L_18736619_SNP [dm3] 3L_18743519_SNP [dm6]	C	G	2.577e^-4	0.971	UPSTREAM CG6885 INTERGENIC
2R	14447694	2R_14447694_SNP [dm3] 2R_18560189_SNP [dm6]	G	T	2.583e^-4	0.971	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4335331	2L_4335331_SNP [dm3] 2L_4335331_SNP [dm6]	C	G	2.594e^-4	0.971	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15978037	3R_15978037_INS [dm3] 3R_20152315_INS [dm6]	A	ATTGTGGGGACA...	2.607e^-4	0.971	INTERGENIC
X	5479889	X_5479889_SNP [dm3] X_5585856_SNP [dm6]	G	A	2.619e^-4	0.971	INTERGENIC
3L	20981228	3L_20981228_SNP [dm3] 3L_20988128_SNP [dm6]	A	T	2.623e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	3474848	2R_3474848_SNP [dm3] 2R_7587343_SNP [dm6]	T	G	2.630e^-4	0.971	UPSTREAM blow DOWNSTREAM CG1360 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17449868	3R_17449868_SNP [dm3] 3R_21624146_SNP [dm6]	T	C	2.649e^-4	0.971	INTRON E2f
3R	17651290	3R_17651290_SNP [dm3] 3R_21825568_SNP [dm6]	A	C	2.661e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	25915628	3R_25915628_DEL [dm3] 3R_30089906_DEL [dm6]	CTCCTCCTCTT...	C	2.665e^-4	0.971	INTRON sima	TF binding site mE1_TFBS_Trl
3R	21861857	3R_21861857_SNP [dm3] 3R_26036135_SNP [dm6]	T	C	2.665e^-4	0.971	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9716346	3L_9716346_SNP [dm3] 3L_9723246_SNP [dm6]	T	A	2.686e^-4	0.971	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11035943	3L_11035943_SNP [dm3] 3L_11042843_SNP [dm6]	G	A	2.704e^-4	0.971	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	12918231	2R_12918231_SNP [dm3] 2R_17030726_SNP [dm6]	A	T	2.712e^-4	0.971	INTRON RhoGEF2
3R	18731656	3R_18731656_SNP [dm3] 3R_22905934_SNP [dm6]	T	C	2.723e^-4	0.971	INTRON klg
2R	5125848	2R_5125848_SNP [dm3] 2R_9238343_SNP [dm6]	G	A	2.732e^-4	0.971	SYNONYMOUS_CODING Cyp4p2 INTRON hig
3L	2419982	3L_2419982_SNP [dm3] 3L_2419982_SNP [dm6]	G	A	2.738e^-4	0.971	INTRON CG45186
2R	14594821	2R_14594821_SNP [dm3] 2R_18707316_SNP [dm6]	A	G	2.743e^-4	0.971	DOWNSTREAM CG15087 INTRON CG15073	TF binding site mE1_TFBS_sens
X	21994366	X_21994366_SNP [dm3] X_22592530_SNP [dm6]	C	T	2.750e^-4	0.971	INTRON Cda4	transposable element FlyBase
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	2.754e^-4	0.971	INTERGENIC
2L	5015156	2L_5015156_SNP [dm3] 2L_5015156_SNP [dm6]	A	T	2.758e^-4	0.971	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2168056	3L_2168056_SNP [dm3] 3L_2168056_SNP [dm6]	T	C	2.761e^-4	0.971	SYNONYMOUS_CODING CG15879
3R	26513747	3R_26513747_SNP [dm3] 3R_30688025_SNP [dm6]	G	A	2.782e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3062373	X_3062373_SNP [dm3] X_3168340_SNP [dm6]	T	G	2.787e^-4	0.971	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5127490	2R_5127490_SNP [dm3] 2R_9239985_SNP [dm6]	C	G	2.797e^-4	0.971	UPSTREAM Cyp4p1 DOWNSTREAM Cyp4p2 INTRON hig	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19463720	3L_19463720_SNP [dm3] 3L_19470620_SNP [dm6]	G	C	2.806e^-4	0.971	INTERGENIC	transposable element FlyBase
3L	13064228	3L_13064228_SNP [dm3] 3L_13071128_SNP [dm6]	T	A	2.816e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	13064397	3L_13064397_SNP [dm3] 3L_13071297_SNP [dm6]	C	T	2.816e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	12243844	3R_12243844_SNP [dm3] 3R_16418122_SNP [dm6]	A	G	2.819e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	12510375	3R_12510375_SNP [dm3] 3R_16684653_SNP [dm6]	G	A	2.848e^-4	0.971	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	1115949	2L_1115949_SNP [dm3] 2L_1115949_SNP [dm6]	A	G	2.860e^-4	0.971	INTRON Pino
2L	5912854	2L_5912854_SNP [dm3] 2L_5912854_SNP [dm6]	C	T	2.880e^-4	0.971	SYNONYMOUS_CODING bchs
3R	19482993	3R_19482993_SNP [dm3] 3R_23657271_SNP [dm6]	A	G	2.880e^-4	0.971	INTRON CG31145
3R	21393689	3R_21393689_SNP [dm3] 3R_25567967_SNP [dm6]	A	G	2.881e^-4	0.971	INTRON msi
2R	19017389	2R_19017389_SNP [dm3] 2R_23129866_SNP [dm6]	C	T	2.883e^-4	0.971	INTRON CG3215
X	2221789	X_2221789_SNP [dm3] X_2327756_SNP [dm6]	T	C	2.904e^-4	0.971	INTRON phl & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1452322	X_1452322_SNP [dm3] X_1558289_SNP [dm6]	A	T	2.910e^-4	0.971	UTR_5_PRIME Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo
2L	19818129	2L_19818129_SNP [dm3] 2L_19818129_SNP [dm6]	C	A	2.917e^-4	0.971	INTRON sick	transposable element FlyBase
2L	849403	2L_849403_SNP [dm3] 2L_849403_SNP [dm6]	T	G	2.942e^-4	0.971	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	21122251	2L_21122251_SNP [dm3] 2L_21122251_SNP [dm6]	C	T	2.947e^-4	0.971	SPLICE_SITE_REGION Nhe2 SYNONYMOUS_CODING Nhe2 DOWNSTREAM Nhe2
2R	19022709	2R_19022709_SNP [dm3] 2R_23135186_SNP [dm6]	C	A	2.983e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14084645	2R_14084645_DEL [dm3] 2R_18197140_DEL [dm6]	CATAAAAATG	C	2.992e^-4	0.971	INTERGENIC
3R	3274861	3R_3274861_SNP [dm3] 3R_7449139_SNP [dm6]	A	C	3.005e^-4	0.971	INTERGENIC
3L	5943089	3L_5943089_INS [dm3] 3L_5949989_INS [dm6]	A	AA	3.008e^-4	0.971	INTRON CG33993	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7195223	2R_7195223_SNP [dm3] 2R_11307718_SNP [dm6]	T	A	3.010e^-4	0.971	UPSTREAM CG7745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11240781	3R_11240781_SNP [dm3] 3R_15415059_SNP [dm6]	G	C	3.020e^-4	0.971	UTR_3_PRIME Atx2 INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6865422	2R_6865422_DEL [dm3] 2R_10977917_DEL [dm6]	AA	A	3.022e^-4	0.971	DOWNSTREAM luna INTERGENIC
X	9112756	X_9112756_SNP [dm3] X_9218723_SNP [dm6]	A	T	3.026e^-4	0.971	INTRON t	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11548732	3R_11548732_SNP [dm3] 3R_15723010_SNP [dm6]	T	C	3.046e^-4	0.971	INTERGENIC
3L	5994336	3L_5994336_SNP [dm3] 3L_6001236_SNP [dm6]	C	G	3.053e^-4	0.971	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	978539	3L_978539_SNP [dm3] 3L_978539_SNP [dm6]	T	C	3.054e^-4	0.971	INTRON Glut1
3R	24529334	3R_24529334_INS [dm3] 3R_28703612_INS [dm6]	T	TTT	3.067e^-4	0.971	INTRON htt
2L	3518628	2L_3518628_SNP [dm3] 2L_3518628_SNP [dm6]	T	G	3.078e^-4	0.971	NON_SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6043620	2R_6043620_SNP [dm3] 2R_10156115_SNP [dm6]	T	A	3.079e^-4	0.971	UTR_3_PRIME mlt DOWNSTREAM mlt INTRON KCNQ
X	2398059	X_2398059_SNP [dm3] X_2504026_SNP [dm6]	G	C	3.082e^-4	0.971	INTRON trol
2L	7606964	2L_7606964_SNP [dm3] 2L_7606964_SNP [dm6]	A	G	3.092e^-4	0.971	SYNONYMOUS_CODING Cyp4d21
2L	7606970	2L_7606970_SNP [dm3] 2L_7606970_SNP [dm6]	C	T	3.092e^-4	0.971	SYNONYMOUS_CODING Cyp4d21
2L	7606973	2L_7606973_SNP [dm3] 2L_7606973_SNP [dm6]	G	A	3.092e^-4	0.971	SYNONYMOUS_CODING Cyp4d21
X	11279020	X_11279020_INS [dm3] X_11384987_INS [dm6]	T	TGTGTGT	3.103e^-4	0.971	INTRON dlg1
3L	2228606	3L_2228606_SNP [dm3] 3L_2228606_SNP [dm6]	G	T	3.109e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13811183	3R_13811183_SNP [dm3] 3R_17985461_SNP [dm6]	T	C	3.150e^-4	0.971	INTRON cpo
2R	8556916	2R_8556916_SNP [dm3] 2R_12669411_SNP [dm6]	A	C	3.159e^-4	0.971	INTRON nemy
2R	10846192	2R_10846192_SNP [dm3] 2R_14958687_SNP [dm6]	T	C	3.167e^-4	0.971	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16722436	3R_16722436_SNP [dm3] 3R_20896714_SNP [dm6]	C	T	3.169e^-4	0.971	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	3.170e^-4	0.971	INTRON CG44153 & 1 other
2L	1871647	2L_1871647_SNP [dm3] 2L_1871647_SNP [dm6]	G	C	3.178e^-4	0.971	DOWNSTREAM CG7295 INTRON CG31663
3R	8706267	3R_8706267_SNP [dm3] 3R_12880545_SNP [dm6]	C	T	3.185e^-4	0.971	INTERGENIC
3R	22706543	3R_22706543_SNP [dm3] 3R_26880821_SNP [dm6]	T	C	3.185e^-4	0.971	SYNONYMOUS_CODING ro UPSTREAM T48 DOWNSTREAM CG5500	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11242390	3R_11242390_SNP [dm3] 3R_15416668_SNP [dm6]	G	A	3.187e^-4	0.971	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 2 others
3R	11216401	3R_11216401_SNP [dm3] 3R_15390679_SNP [dm6]	G	A	3.190e^-4	0.971	INTRON Rbp
2R	19809862	2R_19809862_SNP [dm3] 2R_23922339_SNP [dm6]	A	T	3.212e^-4	0.971	INTRON kcc	TF binding site mE1_TFBS_cad
2R	19809865	2R_19809865_SNP [dm3] 2R_23922342_SNP [dm6]	T	C	3.212e^-4	0.971	INTRON kcc	TF binding site mE1_TFBS_cad
2R	19809880	2R_19809880_SNP [dm3] 2R_23922357_SNP [dm6]	A	G	3.212e^-4	0.971	INTRON kcc	TF binding site mE1_TFBS_cad
3L	16985760	3L_16985760_SNP [dm3] 3L_16992660_SNP [dm6]	C	T	3.217e^-4	0.971	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
3L	19324549	3L_19324549_SNP [dm3] 3L_19331449_SNP [dm6]	A	T	3.226e^-4	0.971	INTRON pip
3R	10106221	3R_10106221_SNP [dm3] 3R_14280499_SNP [dm6]	A	G	3.258e^-4	0.971	INTRON trx
2L	3518429	2L_3518429_SNP [dm3] 2L_3518429_SNP [dm6]	T	A	3.271e^-4	0.971	SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13887077	2R_13887077_SNP [dm3] 2R_17999572_SNP [dm6]	G	C	3.304e^-4	0.971	INTRON dpr13
3L	18680185	3L_18680185_SNP [dm3] 3L_18687085_SNP [dm6]	T	C	3.306e^-4	0.971	UPSTREAM Cyp12c1 INTERGENIC
3L	16573520	3L_16573520_SNP [dm3] 3L_16580420_SNP [dm6]	T	C	3.308e^-4	0.971	UTR_3_PRIME Smn UPSTREAM nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	19193307	3L_19193307_SNP [dm3] 3L_19200207_SNP [dm6]	A	T	3.319e^-4	0.971	INTRON fz2
2L	9990729	2L_9990729_SNP [dm3] 2L_9990729_SNP [dm6]	C	A	3.324e^-4	0.971	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2166168	3L_2166168_SNP [dm3] 3L_2166168_SNP [dm6]	A	C	3.325e^-4	0.971	INTERGENIC
X	17863436	X_17863436_SNP [dm3] X_17969403_SNP [dm6]	T	C	3.328e^-4	0.971	INTRON Sh	TF binding site mE1_TFBS_kn
X	17863456	X_17863456_SNP [dm3] X_17969423_SNP [dm6]	C	A	3.328e^-4	0.971	INTRON Sh	TF binding site mE1_TFBS_kn
2R	17340546	2R_17340546_SNP [dm3] 2R_21453041_SNP [dm6]	A	G	3.350e^-4	0.971	INTRON Sdc
3L	2981374	3L_2981374_SNP [dm3] 3L_2981374_SNP [dm6]	C	T	3.350e^-4	0.971	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6040784	2R_6040784_SNP [dm3] 2R_10153279_SNP [dm6]	G	A	3.354e^-4	0.971	UPSTREAM CR45133 INTRON KCNQ & 1 other
2L	9528925	2L_9528925_SNP [dm3] 2L_9528925_SNP [dm6]	C	G	3.359e^-4	0.971	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
3R	16984509	3R_16984509_SNP [dm3] 3R_21158787_SNP [dm6]	C	T	3.376e^-4	0.971	DOWNSTREAM CG10824 INTRON SNF4Agamma
2L	7638643	2L_7638643_SNP [dm3] 2L_7638643_SNP [dm6]	A	G	3.382e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25629999	3R_25629999_SNP [dm3] 3R_29804277_SNP [dm6]	A	T	3.393e^-4	0.971	SYNONYMOUS_CODING CG7789 DOWNSTREAM ncd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9159677	2L_9159677_SNP [dm3] 2L_9159677_SNP [dm6]	T	C	3.398e^-4	0.971	INTRON CG32982
2L	6018625	2L_6018625_SNP [dm3] 2L_6018625_SNP [dm6]	A	C	3.418e^-4	0.971	INTRON H2.0	TF binding site mE1_TFBS_cad
2L	8249106	2L_8249106_SNP [dm3] 2L_8249106_SNP [dm6]	A	G	3.498e^-4	0.971	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	17616643	2R_17616643_SNP [dm3] 2R_21729138_SNP [dm6]	G	T	3.504e^-4	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23119403	3R_23119403_SNP [dm3] 3R_27293681_SNP [dm6]	C	T	3.504e^-4	0.971	DOWNSTREAM CG3339 INTERGENIC
2L	19424013	2L_19424013_SNP [dm3] 2L_19424013_SNP [dm6]	A	C	3.523e^-4	0.971	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12346092	3L_12346092_SNP [dm3] 3L_12352992_SNP [dm6]	G	C	3.525e^-4	0.971	INTERGENIC
3L	12346105	3L_12346105_SNP [dm3] 3L_12353005_SNP [dm6]	T	C	3.525e^-4	0.971	INTERGENIC
X	3033208	X_3033208_SNP [dm3] X_3139175_SNP [dm6]	C	A	3.526e^-4	0.971	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2345163	3L_2345163_SNP [dm3] 3L_2345163_SNP [dm6]	A	C	3.528e^-4	0.971	UTR_3_PRIME MsR1
3L	20492122	3L_20492122_SNP [dm3] 3L_20499022_SNP [dm6]	A	G	3.539e^-4	0.971	UPSTREAM CG18281 INTRON CG32425
3L	18849394	3L_18849394_INS [dm3] 3L_18856294_INS [dm6]	T	TT	3.539e^-4	0.971	UPSTREAM CR45388 INTERGENIC
X	15263432	X_15263432_SNP [dm3] X_15369399_SNP [dm6]	A	T	3.549e^-4	0.971	INTRON acj6
3L	12052465	3L_12052465_SNP [dm3] 3L_12059365_SNP [dm6]	A	G	3.550e^-4	0.971	INTRON rols
2R	9363835	2R_9363835_SNP [dm3] 2R_13476330_SNP [dm6]	C	A	3.554e^-4	0.971	INTRON arr
3L	1381787	3L_1381787_SNP [dm3] 3L_1381787_SNP [dm6]	C	G	3.562e^-4	0.971	INTRON Ptp61F & 1 other
2R	3474812	2R_3474812_SNP [dm3] 2R_7587307_SNP [dm6]	G	A	3.579e^-4	0.971	UPSTREAM blow DOWNSTREAM CG1360 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15559401	2R_15559401_SNP [dm3] 2R_19671896_SNP [dm6]	C	G	3.583e^-4	0.971	INTRON isopeptidase-T-3	TF binding site mE1_TFBS_sens
2R	15559413	2R_15559413_SNP [dm3] 2R_19671908_SNP [dm6]	C	T	3.583e^-4	0.971	SPLICE_SITE_REGION isopeptidase-T-3 SYNONYMOUS_CODING isopeptidase-T-3	TF binding site mE1_TFBS_sens
3R	22652007	3R_22652007_SNP [dm3] 3R_26826285_SNP [dm6]	T	G	3.583e^-4	0.971	INTRON Tl
3R	22652008	3R_22652008_SNP [dm3] 3R_26826286_SNP [dm6]	G	T	3.583e^-4	0.971	INTRON Tl
3L	2170282	3L_2170282_SNP [dm3] 3L_2170282_SNP [dm6]	A	C	3.599e^-4	0.971	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8012005	2L_8012005_SNP [dm3] 2L_8012005_SNP [dm6]	C	T	3.605e^-4	0.971	UPSTREAM Tg INTRON Tg
X	3784831	X_3784831_SNP [dm3] X_3890798_SNP [dm6]	A	T	3.622e^-4	0.971	DOWNSTREAM CG15239 & 1 other INTERGENIC
2R	15094501	2R_15094501_SNP [dm3] 2R_19206996_SNP [dm6]	C	A	3.622e^-4	0.971	INTRON hppy
3L	14336276	3L_14336276_SNP [dm3] 3L_14343176_SNP [dm6]	A	T	3.634e^-4	0.971	INTRON fz
X	1453933	X_1453933_SNP [dm3] X_1559900_SNP [dm6]	C	T	3.690e^-4	0.971	INTRON Mur2B
2R	5119960	2R_5119960_SNP [dm3] 2R_9232455_SNP [dm6]	G	T	3.710e^-4	0.971	INTRON hig	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4338223	X_4338223_SNP [dm3] X_4444190_SNP [dm6]	C	A	3.714e^-4	0.971	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
2R	12355663	2R_12355663_SNP [dm3] 2R_16468158_SNP [dm6]	G	C	3.731e^-4	0.971	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3R	25326348	3R_25326348_SNP [dm3] 3R_29500626_SNP [dm6]	C	A	3.733e^-4	0.971	INTRON Trc8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18776015	3R_18776015_SNP [dm3] 3R_22950293_SNP [dm6]	G	C	3.734e^-4	0.971	INTRON klg
3L	3751337	3L_3751337_SNP [dm3] 3L_3751337_SNP [dm6]	A	T	3.735e^-4	0.971	INTRON CG32264
2R	19156865	2R_19156865_SNP [dm3] 2R_23269342_SNP [dm6]	T	G	3.735e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12422334	3L_12422334_SNP [dm3] 3L_12429234_SNP [dm6]	T	A	3.753e^-4	0.971	INTRON toe
3L	9050741	3L_9050741_SNP [dm3] 3L_9057641_SNP [dm6]	C	A	3.759e^-4	0.971	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_Trl
3R	23186892	3R_23186892_DEL [dm3] 3R_27361170_DEL [dm6]	CAAG	C	3.775e^-4	0.971	CODON_DELETION CG42534	TF binding site mE1_TFBS_chinmo
X	7313116	X_7313116_SNP [dm3] X_7419083_SNP [dm6]	A	T	3.775e^-4	0.971	INTRON CG9657
2R	18487464	2R_18487464_SNP [dm3] 2R_22599959_SNP [dm6]	G	A	3.799e^-4	0.971	NON_SYNONYMOUS_CODING CG4269 DOWNSTREAM CG4294
2R	14612546	2R_14612546_SNP [dm3] 2R_18725041_SNP [dm6]	C	T	3.800e^-4	0.971	INTRON Hs3st-A
3L	8546058	3L_8546058_SNP [dm3] 3L_8552958_SNP [dm6]	T	A	3.803e^-4	0.971	INTRON rhea
3L	5657827	3L_5657827_SNP [dm3] 3L_5664727_SNP [dm6]	C	G	3.819e^-4	0.971	UPSTREAM sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21569828	3R_21569828_SNP [dm3] 3R_25744106_SNP [dm6]	T	C	3.836e^-4	0.971	INTRON LpR1
2L	2668495	2L_2668495_SNP [dm3] 2L_2668495_SNP [dm6]	C	T	3.836e^-4	0.971	INTERGENIC
2R	15542758	2R_15542758_SNP [dm3] 2R_19655253_SNP [dm6]	T	A	3.839e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	23157209	3R_23157209_SNP [dm3] 3R_27331487_SNP [dm6]	T	A	3.849e^-4	0.971	UPSTREAM CG3330 INTERGENIC
2L	10556409	2L_10556409_SNP [dm3] 2L_10556409_SNP [dm6]	G	A	3.853e^-4	0.971	INTRON Trim9
X	19778485	X_19778485_SNP [dm3] X_19884452_SNP [dm6]	T	C	3.854e^-4	0.971	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	17747864	2R_17747864_SNP [dm3] 2R_21860359_SNP [dm6]	C	A	3.858e^-4	0.971	UPSTREAM CG9294 INTERGENIC
3L	20455404	3L_20455404_SNP [dm3] 3L_20462304_SNP [dm6]	T	C	3.860e^-4	0.971	DOWNSTREAM mag INTRON CG5195
2R	17115470	2R_17115470_SNP [dm3] 2R_21227965_SNP [dm6]	C	G	3.861e^-4	0.971	INTRON ASPP
3L	14963327	3L_14963327_SNP [dm3] 3L_14970227_SNP [dm6]	A	G	3.870e^-4	0.971	UTR_3_PRIME Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9112794	X_9112794_SNP [dm3] X_9218761_SNP [dm6]	A	G	3.893e^-4	0.971	INTRON t	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11187162	X_11187162_SNP [dm3] X_11293129_SNP [dm6]	C	T	3.894e^-4	0.971	INTRON CG44422
2R	17616321	2R_17616321_SNP [dm3] 2R_21728816_SNP [dm6]	C	T	3.905e^-4	0.971	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	24522562	3R_24522562_SNP [dm3] 3R_28696840_SNP [dm6]	A	C	3.920e^-4	0.971	SYNONYMOUS_CODING htt DOWNSTREAM CG9990	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16290107	2L_16290107_SNP [dm3] 2L_16290107_SNP [dm6]	G	A	3.926e^-4	0.971	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
X	21088475	X_21088475_SNP [dm3] X_21217448_SNP [dm6]	T	A	3.927e^-4	0.971	UPSTREAM CG32523 INTRON CG32521
2R	13610619	2R_13610619_SNP [dm3] 2R_17723114_SNP [dm6]	A	G	3.935e^-4	0.971	UTR_3_PRIME CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	19537776	3R_19537776_SNP [dm3] 3R_23712054_SNP [dm6]	G	T	3.943e^-4	0.971	DOWNSTREAM CG10301 & 1 other INTRON CG10300
3R	19537819	3R_19537819_SNP [dm3] 3R_23712097_SNP [dm6]	C	T	3.943e^-4	0.971	SYNONYMOUS_CODING CG10300 DOWNSTREAM CG10301 & 1 other
3L	11035939	3L_11035939_SNP [dm3] 3L_11042839_SNP [dm6]	T	G	3.959e^-4	0.971	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	6045607	2R_6045607_SNP [dm3] 2R_10158102_SNP [dm6]	C	T	3.971e^-4	0.971	UTR_5_PRIME mlt INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	7667984	X_7667984_DEL [dm3] X_7773951_DEL [dm6]	TTTTCT	A	3.971e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17651360	3R_17651360_SNP [dm3] 3R_21825638_SNP [dm6]	G	A	3.971e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2L	6160400	2L_6160400_SNP [dm3] 2L_6160400_SNP [dm6]	A	T	3.976e^-4	0.971	UTR_5_PRIME CG13989	TF binding site mE1_TFBS_inv
2L	6160410	2L_6160410_SNP [dm3] 2L_6160410_SNP [dm6]	G	T	3.976e^-4	0.971	UTR_5_PRIME CG13989	TF binding site mE1_TFBS_inv
2L	5915603	2L_5915603_SNP [dm3] 2L_5915603_SNP [dm6]	A	G	3.982e^-4	0.971	SYNONYMOUS_CODING bchs
2L	3589603	2L_3589603_SNP [dm3] 2L_3589603_SNP [dm6]	T	G	4.007e^-4	0.971	INTRON CR43823	TF binding site BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA
2R	12343889	2R_12343889_SNP [dm3] 2R_16456384_SNP [dm6]	G	A	4.013e^-4	0.971	INTERGENIC
3L	20981224	3L_20981224_SNP [dm3] 3L_20988124_SNP [dm6]	T	A	4.017e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17170022	2L_17170022_SNP [dm3] 2L_17170022_SNP [dm6]	G	A	4.017e^-4	0.971	SYNONYMOUS_CODING beat-IIIa UTR_5_PRIME CG34106
3L	15193583	3L_15193583_SNP [dm3] 3L_15200483_SNP [dm6]	C	T	4.024e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	8010327	2L_8010327_SNP [dm3] 2L_8010327_SNP [dm6]	G	A	4.037e^-4	0.971	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5878369	X_5878369_SNP [dm3] X_5984336_SNP [dm6]	C	A	4.056e^-4	0.971	NON_SYNONYMOUS_CODING Grip
3R	5772530	3R_5772530_SNP [dm3] 3R_9946808_SNP [dm6]	T	C	4.104e^-4	0.971	INTRON Glut4EF
3L	2171121	3L_2171121_SNP [dm3] 3L_2171121_SNP [dm6]	T	C	4.105e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
2L	3069864	2L_3069864_SNP [dm3] 2L_3069864_SNP [dm6]	G	A	4.112e^-4	0.971	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27392675	3R_27392675_SNP [dm3] 3R_31566953_SNP [dm6]	G	T	4.114e^-4	0.971	DOWNSTREAM nyo INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18593421	3R_18593421_SNP [dm3] 3R_22767699_SNP [dm6]	T	C	4.120e^-4	0.971	UTR_5_PRIME CG13841 DOWNSTREAM CG43091 INTRON Usp12-46 & 1 other
2L	4650232	2L_4650232_SNP [dm3] 2L_4650232_SNP [dm6]	T	C	4.122e^-4	0.971	INTERGENIC
2L	9885890	2L_9885890_SNP [dm3] 2L_9885890_SNP [dm6]	G	T	4.122e^-4	0.971	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3R	17616134	3R_17616134_SNP [dm3] 3R_21790412_SNP [dm6]	C	T	4.139e^-4	0.971	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2R	17341586	2R_17341586_SNP [dm3] 2R_21454081_SNP [dm6]	C	A	4.139e^-4	0.971	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	18383130	3R_18383130_SNP [dm3] 3R_22557408_SNP [dm6]	G	A	4.149e^-4	0.971	DOWNSTREAM bond & 1 other INTERGENIC
3L	2438169	3L_2438169_MNP [dm3] 3L_2438169_MNP [dm6]	ACG	TTC	4.161e^-4	0.971	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15556279	2R_15556279_SNP [dm3] 2R_19668774_SNP [dm6]	A	T	4.166e^-4	0.971	INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	15556296	2R_15556296_SNP [dm3] 2R_19668791_SNP [dm6]	C	T	4.166e^-4	0.971	SPLICE_SITE_REGION hrg UTR_5_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	15556304	2R_15556304_SNP [dm3] 2R_19668799_SNP [dm6]	C	A	4.166e^-4	0.971	UTR_5_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15556314	2R_15556314_SNP [dm3] 2R_19668809_SNP [dm6]	A	G	4.166e^-4	0.971	UTR_5_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15787767	2L_15787767_SNP [dm3] 2L_15787767_SNP [dm6]	A	T	4.166e^-4	0.971	NON_SYNONYMOUS_CODING CG18109
2L	15787787	2L_15787787_SNP [dm3] 2L_15787787_SNP [dm6]	T	C	4.166e^-4	0.971	NON_SYNONYMOUS_CODING CG18109
3L	2342960	3L_2342960_SNP [dm3] 3L_2342960_SNP [dm6]	T	A	4.166e^-4	0.971	SYNONYMOUS_CODING MsR1
2R	15559861	2R_15559861_SNP [dm3] 2R_19672356_SNP [dm6]	C	A	4.170e^-4	0.971	SYNONYMOUS_CODING isopeptidase-T-3
3R	17225190	3R_17225190_SNP [dm3] 3R_21399468_SNP [dm6]	G	A	4.176e^-4	0.971	SYNONYMOUS_CODING CG6475
3L	2340609	3L_2340609_SNP [dm3] 3L_2340609_SNP [dm6]	C	G	4.181e^-4	0.971	INTRON MsR1	TF binding site mE1_TFBS_inv
2L	10676533	2L_10676533_SNP [dm3] 2L_10676533_SNP [dm6]	T	G	4.184e^-4	0.971	UPSTREAM CG17104 INTERGENIC
2L	6421983	2L_6421983_SNP [dm3] 2L_6421983_SNP [dm6]	T	C	4.209e^-4	0.971	INTRON Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18776271	3R_18776271_SNP [dm3] 3R_22950549_SNP [dm6]	A	G	4.230e^-4	0.971	INTRON klg
3R	18776272	3R_18776272_SNP [dm3] 3R_22950550_SNP [dm6]	A	C	4.230e^-4	0.971	INTRON klg
3R	18776276	3R_18776276_SNP [dm3] 3R_22950554_SNP [dm6]	C	T	4.230e^-4	0.971	INTRON klg
3L	6709787	3L_6709787_SNP [dm3] 3L_6716687_SNP [dm6]	G	A	4.236e^-4	0.971	SYNONYMOUS_CODING ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6778293	2R_6778293_SNP [dm3] 2R_10890788_SNP [dm6]	T	A	4.245e^-4	0.971	INTRON CG30020
2R	13001336	2R_13001336_SNP [dm3] 2R_17113831_SNP [dm6]	G	C	4.245e^-4	0.971	NON_SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad
3L	10366798	3L_10366798_SNP [dm3] 3L_10373698_SNP [dm6]	A	T	4.248e^-4	0.971	INTERGENIC
3L	10366836	3L_10366836_SNP [dm3] 3L_10373736_SNP [dm6]	T	A	4.248e^-4	0.971	INTERGENIC
3L	2873465	3L_2873465_SNP [dm3] 3L_2873465_SNP [dm6]	A	C	4.257e^-4	0.971	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	9180152	X_9180152_SNP [dm3] X_9286119_SNP [dm6]	C	T	4.263e^-4	0.971	SYNONYMOUS_CODING lz
3R	17781235	3R_17781235_DEL [dm3] 3R_21955513_DEL [dm6]	CCACACCAC	C	4.273e^-4	0.971	INTRON Eip93F
X	12447033	X_12447033_SNP [dm3] X_12553000_SNP [dm6]	C	A	4.293e^-4	0.971	UPSTREAM Cpr11B INTRON CG43921
X	5724766	X_5724766_SNP [dm3] X_5830733_SNP [dm6]	T	A	4.313e^-4	0.971	INTRON CG15765
3L	843104	3L_843104_SNP [dm3] 3L_843104_SNP [dm6]	T	G	4.337e^-4	0.971	SYNONYMOUS_CODING Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
2R	17480787	2R_17480787_SNP [dm3] 2R_21593282_SNP [dm6]	A	G	4.348e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6135773	2R_6135773_SNP [dm3] 2R_10248268_SNP [dm6]	C	G	4.352e^-4	0.971	UPSTREAM CG12209 & 1 other INTRON CG12914
X	18309295	X_18309295_SNP [dm3] X_18415262_SNP [dm6]	G	T	4.360e^-4	0.971	UPSTREAM CG15056 INTERGENIC
2L	4163944	2L_4163944_SNP [dm3] 2L_4163944_SNP [dm6]	T	G	4.362e^-4	0.971	DOWNSTREAM Or24a INTERGENIC
2L	5915618	2L_5915618_SNP [dm3] 2L_5915618_SNP [dm6]	A	G	4.369e^-4	0.971	SYNONYMOUS_CODING bchs
2R	15102383	2R_15102383_SNP [dm3] 2R_19214878_SNP [dm6]	G	A	4.372e^-4	0.971	INTRON hppy
3R	25519522	3R_25519522_SNP [dm3] 3R_29693800_SNP [dm6]	T	C	4.387e^-4	0.971	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo
3L	11188014	3L_11188014_SNP [dm3] 3L_11194914_SNP [dm6]	A	C	4.389e^-4	0.971	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
X	5867190	X_5867190_SNP [dm3] X_5973157_SNP [dm6]	A	G	4.400e^-4	0.971	INTRON Grip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6018876	2L_6018876_SNP [dm3] 2L_6018876_SNP [dm6]	T	G	4.450e^-4	0.971	SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	1356055	3L_1356055_SNP [dm3] 3L_1356055_SNP [dm6]	C	A	4.469e^-4	0.971	INTRON Ptp61F	TF binding site mE1_TFBS_inv
X	5726674	X_5726674_SNP [dm3] X_5832641_SNP [dm6]	T	C	4.478e^-4	0.971	UPSTREAM CR43264 DOWNSTREAM tRNA:CR32761:Psi INTRON CG15765
2R	15442419	2R_15442419_SNP [dm3] 2R_19554914_SNP [dm6]	G	A	4.486e^-4	0.971	INTRON sm
2R	11606229	2R_11606229_SNP [dm3] 2R_15718724_SNP [dm6]	C	T	4.490e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15459566	3L_15459566_SNP [dm3] 3L_15466466_SNP [dm6]	A	G	4.500e^-4	0.971	INTERGENIC
3R	17615722	3R_17615722_SNP [dm3] 3R_21790000_SNP [dm6]	C	A	4.500e^-4	0.971	INTRON CASK	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10635917	3L_10635917_SNP [dm3] 3L_10642817_SNP [dm6]	A	C	4.513e^-4	0.971	NON_SYNONYMOUS_CODING CG14154 UPSTREAM CG14153 INTRON CG32066
2R	16968840	2R_16968840_SNP [dm3] 2R_21081335_SNP [dm6]	A	G	4.520e^-4	0.971	INTRON Treh
3R	10596496	3R_10596496_SNP [dm3] 3R_14770774_SNP [dm6]	G	C	4.532e^-4	0.971	INTRON jvl
2R	16939478	2R_16939478_SNP [dm3] 2R_21051973_SNP [dm6]	G	A	4.544e^-4	0.971	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14752954	3L_14752954_SNP [dm3] 3L_14759854_SNP [dm6]	T	C	4.549e^-4	0.971	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10795094	2R_10795094_INS [dm3] 2R_14907589_INS [dm6]	T	TGTGTCTTTT	4.552e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795101	2R_10795101_SNP [dm3] 2R_14907596_SNP [dm6]	A	T	4.552e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795115	2R_10795115_INS [dm3] 2R_14907610_INS [dm6]	T	TTTATTTCATTTAGTGT...	4.552e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795123	2R_10795123_SNP [dm3] 2R_14907618_SNP [dm6]	A	T	4.552e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5885097	X_5885097_SNP [dm3] X_5991064_SNP [dm6]	T	C	4.554e^-4	0.971	SYNONYMOUS_CODING CG5966	TF binding site mE1_TFBS_chinmo
X	17288487	X_17288487_SNP [dm3] X_17394454_SNP [dm6]	A	G	4.574e^-4	0.971	INTERGENIC
2R	9679806	2R_9679806_SNP [dm3] 2R_13792301_SNP [dm6]	A	G	4.575e^-4	0.971	EXON CR43811
3L	13186534	3L_13186534_SNP [dm3] 3L_13193434_SNP [dm6]	G	A	4.582e^-4	0.971	INTERGENIC
3R	21396743	3R_21396743_SNP [dm3] 3R_25571021_SNP [dm6]	A	C	4.588e^-4	0.971	INTRON msi
2R	6181060	2R_6181060_SNP [dm3] 2R_10293555_SNP [dm6]	T	C	4.606e^-4	0.971	INTRON CAP
X	18086318	X_18086318_SNP [dm3] X_18192285_SNP [dm6]	G	A	4.607e^-4	0.971	INTRON Frq2	TF binding site mE1_TFBS_chinmo
3L	5964137	3L_5964137_SNP [dm3] 3L_5971037_SNP [dm6]	A	T	4.620e^-4	0.971	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6129852	2R_6129852_SNP [dm3] 2R_10242347_SNP [dm6]	C	A	4.626e^-4	0.971	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6357292	3L_6357292_SNP [dm3] 3L_6364192_SNP [dm6]	G	C	4.631e^-4	0.971	INTERGENIC
3L	6357294	3L_6357294_SNP [dm3] 3L_6364194_SNP [dm6]	A	G	4.631e^-4	0.971	INTERGENIC
3L	18934457	3L_18934457_SNP [dm3] 3L_18941357_SNP [dm6]	T	G	4.633e^-4	0.971	INTRON CG32204
2L	7590972	2L_7590972_SNP [dm3] 2L_7590972_SNP [dm6]	A	T	4.637e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	7590980	2L_7590980_SNP [dm3] 2L_7590980_SNP [dm6]	A	T	4.637e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	1951963	2L_1951963_SNP [dm3] 2L_1951963_SNP [dm6]	G	A	4.640e^-4	0.971	NON_SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12262247	2R_12262247_SNP [dm3] 2R_16374742_SNP [dm6]	C	T	4.653e^-4	0.971	INTERGENIC
3L	2459587	3L_2459587_SNP [dm3] 3L_2459587_SNP [dm6]	A	G	4.658e^-4	0.971	SPLICE_SITE_REGION CG45186 INTRON CG45186
3L	17668305	3L_17668305_SNP [dm3] 3L_17675205_SNP [dm6]	C	A	4.663e^-4	0.971	INTRON CG34251
3L	17668323	3L_17668323_SNP [dm3] 3L_17675223_SNP [dm6]	T	G	4.663e^-4	0.971	INTRON CG34251
3L	17668330	3L_17668330_SNP [dm3] 3L_17675230_SNP [dm6]	A	T	4.663e^-4	0.971	INTRON CG34251
3L	17668341	3L_17668341_SNP [dm3] 3L_17675241_SNP [dm6]	A	C	4.663e^-4	0.971	INTRON CG34251
3L	17668357	3L_17668357_SNP [dm3] 3L_17675257_SNP [dm6]	T	C	4.663e^-4	0.971	INTRON CG34251
3R	27263998	3R_27263998_SNP [dm3] 3R_31438276_SNP [dm6]	A	G	4.663e^-4	0.971	INTRON Gprk2
3L	12052471	3L_12052471_SNP [dm3] 3L_12059371_SNP [dm6]	G	A	4.676e^-4	0.971	INTRON rols
2L	10676532	2L_10676532_SNP [dm3] 2L_10676532_SNP [dm6]	G	T	4.694e^-4	0.971	UPSTREAM CG17104 INTERGENIC
2L	10676567	2L_10676567_SNP [dm3] 2L_10676567_SNP [dm6]	T	A	4.694e^-4	0.971	UPSTREAM CG17104 INTERGENIC
2L	10676593	2L_10676593_INS [dm3] 2L_10676593_INS [dm6]	T	TAACGAATTAGTT...	4.694e^-4	0.971	UPSTREAM CG17104 INTERGENIC
2L	10676608	2L_10676608_SNP [dm3] 2L_10676608_SNP [dm6]	T	G	4.694e^-4	0.971	UPSTREAM CG17104 INTERGENIC
3R	13400135	3R_13400135_SNP [dm3] 3R_17574413_SNP [dm6]	A	T	4.705e^-4	0.971	INTERGENIC
2L	16568754	2L_16568754_SNP [dm3] 2L_16568754_SNP [dm6]	G	A	4.725e^-4	0.971	INTRON CG42389
2R	16210940	2R_16210940_SNP [dm3] 2R_20323435_SNP [dm6]	C	G	4.732e^-4	0.971	NON_SYNONYMOUS_CODING CG8920	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6040787	2R_6040787_SNP [dm3] 2R_10153282_SNP [dm6]	T	G	4.737e^-4	0.971	UPSTREAM CR45133 INTRON KCNQ & 1 other
3L	11630030	3L_11630030_SNP [dm3] 3L_11636930_SNP [dm6]	C	T	4.746e^-4	0.971	INTRON CG32091
3L	11630062	3L_11630062_SNP [dm3] 3L_11636962_SNP [dm6]	C	T	4.746e^-4	0.971	INTRON CG32091
3R	11710977	3R_11710977_SNP [dm3] 3R_15885255_SNP [dm6]	C	A	4.771e^-4	0.971	INTERGENIC
2L	9137605	2L_9137605_SNP [dm3] 2L_9137605_SNP [dm6]	A	T	4.778e^-4	0.971	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv
2L	3507003	2L_3507003_SNP [dm3] 2L_3507003_SNP [dm6]	C	G	4.784e^-4	0.971	INTRON tim
3L	13488671	3L_13488671_SNP [dm3] 3L_13495571_SNP [dm6]	A	C	4.810e^-4	0.971	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15977929	3R_15977929_SNP [dm3] 3R_20152207_SNP [dm6]	C	G	4.823e^-4	0.971	INTERGENIC
3L	3656599	3L_3656599_SNP [dm3] 3L_3656599_SNP [dm6]	A	G	4.835e^-4	0.971	INTERGENIC
2R	15410227	2R_15410227_SNP [dm3] 2R_19522722_SNP [dm6]	A	G	4.859e^-4	0.971	UTR_3_PRIME sm
3R	15394476	3R_15394476_SNP [dm3] 3R_19568754_SNP [dm6]	C	A	4.860e^-4	0.971	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15727747	2R_15727747_SNP [dm3] 2R_19840242_SNP [dm6]	G	T	4.869e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16425624	3L_16425624_SNP [dm3] 3L_16432524_SNP [dm6]	G	A	4.874e^-4	0.971	INTRON CG33158 & 1 other
2L	6311533	2L_6311533_SNP [dm3] 2L_6311533_SNP [dm6]	A	G	4.876e^-4	0.971	INTRON Ddr
3L	15790278	3L_15790278_SNP [dm3] 3L_15797178_SNP [dm6]	T	A	4.888e^-4	0.971	INTERGENIC
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	4.915e^-4	0.971	INTRON 5-HT1A
3L	12219177	3L_12219177_SNP [dm3] 3L_12226077_SNP [dm6]	C	T	4.925e^-4	0.971	INTRON app
3R	24966601	3R_24966601_DEL [dm3] 3R_29140879_DEL [dm6]	GTATATAAAG	G	4.931e^-4	0.971	INTRON CG14516
2R	6151728	2R_6151728_SNP [dm3] 2R_10264223_SNP [dm6]	G	A	4.939e^-4	0.971	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	7606757	2R_7606757_SNP [dm3] 2R_11719252_SNP [dm6]	C	T	4.942e^-4	0.971	INTRON pyr
X	1452320	X_1452320_SNP [dm3] X_1558287_SNP [dm6]	T	C	4.961e^-4	0.971	UTR_5_PRIME Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo
2R	6046593	2R_6046593_SNP [dm3] 2R_10159088_SNP [dm6]	A	T	4.963e^-4	0.971	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	10926968	2L_10926968_SNP [dm3] 2L_10926968_SNP [dm6]	A	T	4.970e^-4	0.971	INTRON dpr2
3L	2981371	3L_2981371_SNP [dm3] 3L_2981371_SNP [dm6]	T	C	4.974e^-4	0.971	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14093506	3L_14093506_SNP [dm3] 3L_14100406_SNP [dm6]	C	T	4.977e^-4	0.971	INTERGENIC
2R	6292774	2R_6292774_SNP [dm3] 2R_10405269_SNP [dm6]	G	A	4.985e^-4	0.971	INTRON CG42732
3R	27146638	3R_27146638_SNP [dm3] 3R_31320916_SNP [dm6]	C	A	4.992e^-4	0.971	INTRON CG34347
3R	22323779	3R_22323779_SNP [dm3] 3R_26498057_SNP [dm6]	T	C	5.010e^-4	0.971	INTRON plum
2R	10221371	2R_10221371_SNP [dm3] 2R_14333866_SNP [dm6]	C	T	5.023e^-4	0.971	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2007231	3L_2007231_SNP [dm3] 3L_2007231_SNP [dm6]	A	G	5.027e^-4	0.971	INTERGENIC
2R	20634302	2R_20634302_SNP [dm3] 2R_24746779_SNP [dm6]	C	T	5.039e^-4	0.971	INTRON CG30421
2R	6131225	2R_6131225_SNP [dm3] 2R_10243720_SNP [dm6]	G	C	5.047e^-4	0.971	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2R	15094265	2R_15094265_SNP [dm3] 2R_19206760_SNP [dm6]	G	C	5.050e^-4	0.971	INTRON hppy
X	11187166	X_11187166_SNP [dm3] X_11293133_SNP [dm6]	G	C	5.051e^-4	0.971	INTRON CG44422
3L	2008231	3L_2008231_SNP [dm3] 3L_2008231_SNP [dm6]	C	G	5.055e^-4	0.971	DOWNSTREAM CR44535 INTERGENIC
2L	20652694	2L_20652694_SNP [dm3] 2L_20652694_SNP [dm6]	G	A	5.057e^-4	0.971	SYNONYMOUS_CODING bru
3R	23875646	3R_23875646_SNP [dm3] 3R_28049924_SNP [dm6]	C	T	5.070e^-4	0.971	SYNONYMOUS_CODING CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	11187167	X_11187167_SNP [dm3] X_11293134_SNP [dm6]	A	G	5.074e^-4	0.971	INTRON CG44422
2L	10926966	2L_10926966_SNP [dm3] 2L_10926966_SNP [dm6]	T	A	5.094e^-4	0.971	INTRON dpr2
3L	12422324	3L_12422324_SNP [dm3] 3L_12429224_SNP [dm6]	A	T	5.104e^-4	0.971	INTRON toe
3L	12422337	3L_12422337_SNP [dm3] 3L_12429237_SNP [dm6]	T	A	5.104e^-4	0.971	INTRON toe
X	13333594	X_13333594_SNP [dm3] X_13439561_SNP [dm6]	T	C	5.105e^-4	0.971	INTERGENIC
2L	5838000	2L_5838000_SNP [dm3] 2L_5838000_SNP [dm6]	G	A	5.106e^-4	0.971	INTRON TrissinR
2R	12891921	2R_12891921_SNP [dm3] 2R_17004416_SNP [dm6]	G	A	5.115e^-4	0.971	SYNONYMOUS_CODING NiPp1 DOWNSTREAM CG6796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1439448	3L_1439448_SNP [dm3] 3L_1439448_SNP [dm6]	T	G	5.120e^-4	0.971	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
2R	16208767	2R_16208767_DEL [dm3] 2R_20321262_DEL [dm6]	ACTCAATGTGA...	A	5.144e^-4	0.971	INTRON CG8920
X	4972920	X_4972920_SNP [dm3] X_5078887_SNP [dm6]	A	G	5.144e^-4	0.971	SYNONYMOUS_CODING CG32767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5662627	X_5662627_DEL [dm3] X_5768594_DEL [dm6]	TTGTGATATT	GAAC	5.155e^-4	0.971	INTRON CG42699 & 1 other
2L	15758143	2L_15758143_SNP [dm3] 2L_15758143_SNP [dm6]	A	G	5.173e^-4	0.971	SPLICE_SITE_REGION Gli SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2339049	3L_2339049_SNP [dm3] 3L_2339049_SNP [dm6]	G	A	5.184e^-4	0.971	INTRON MsR1
2R	8536463	2R_8536463_SNP [dm3] 2R_12648958_SNP [dm6]	C	G	5.203e^-4	0.971	UPSTREAM CG8785 INTERGENIC
2R	12912145	2R_12912145_SNP [dm3] 2R_17024640_SNP [dm6]	A	C	5.222e^-4	0.971	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390	TF binding site mE1_TFBS_sens
2R	9161980	2R_9161980_SNP [dm3] 2R_13274475_SNP [dm6]	T	A	5.226e^-4	0.971	INTRON Dh31-R
3L	2981365	3L_2981365_SNP [dm3] 3L_2981365_SNP [dm6]	A	G	5.227e^-4	0.971	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14594894	2R_14594894_SNP [dm3] 2R_18707389_SNP [dm6]	A	G	5.270e^-4	0.971	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
3R	14027244	3R_14027244_SNP [dm3] 3R_18201522_SNP [dm6]	A	G	5.275e^-4	0.971	INTRON CG7985
3R	13890156	3R_13890156_SNP [dm3] 3R_18064434_SNP [dm6]	T	A	5.291e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19416663	2L_19416663_SNP [dm3] 2L_19416663_SNP [dm6]	T	A	5.301e^-4	0.971	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	20630519	2R_20630519_SNP [dm3] 2R_24742996_SNP [dm6]	G	A	5.328e^-4	0.971	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5017783	3L_5017783_SNP [dm3] 3L_5017783_SNP [dm6]	T	C	5.335e^-4	0.971	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11533974	3R_11533974_DEL [dm3] 3R_15708252_DEL [dm6]	AA	A	5.338e^-4	0.971	UTR_3_PRIME CG5404
3L	14914078	3L_14914078_SNP [dm3] 3L_14920978_SNP [dm6]	A	C	5.370e^-4	0.971	UPSTREAM DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	5262945	3R_5262945_SNP [dm3] 3R_9437223_SNP [dm6]	G	A	5.384e^-4	0.971	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	11186888	X_11186888_SNP [dm3] X_11292855_SNP [dm6]	G	T	5.390e^-4	0.971	INTRON CG44422
3L	2461987	3L_2461987_SNP [dm3] 3L_2461987_SNP [dm6]	T	C	5.396e^-4	0.971	UPSTREAM CG45186 INTRON CG45186
3L	2462235	3L_2462235_SNP [dm3] 3L_2462235_SNP [dm6]	G	A	5.396e^-4	0.971	UPSTREAM CG45186 INTRON CG45186
2R	19809881	2R_19809881_SNP [dm3] 2R_23922358_SNP [dm6]	T	A	5.398e^-4	0.971	INTRON kcc	TF binding site mE1_TFBS_cad
X	4469567	X_4469567_SNP [dm3] X_4575534_SNP [dm6]	T	C	5.405e^-4	0.971	INTRON CR32773
2R	20097961	2R_20097961_SNP [dm3] 2R_24210438_SNP [dm6]	A	G	5.407e^-4	0.971	INTERGENIC
2L	7843678	2L_7843678_SNP [dm3] 2L_7843678_SNP [dm6]	C	A	5.416e^-4	0.971	INTERGENIC
2R	14170316	2R_14170316_SNP [dm3] 2R_18282811_SNP [dm6]	T	A	5.416e^-4	0.971	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17480786	2R_17480786_SNP [dm3] 2R_21593281_SNP [dm6]	A	G	5.423e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12803864	2R_12803864_SNP [dm3] 2R_16916359_SNP [dm6]	C	T	5.425e^-4	0.971	INTERGENIC
3L	10369632	3L_10369632_SNP [dm3] 3L_10376532_SNP [dm6]	G	T	5.426e^-4	0.971	INTERGENIC
3L	10369633	3L_10369633_SNP [dm3] 3L_10376533_SNP [dm6]	A	T	5.426e^-4	0.971	INTERGENIC
3L	10369677	3L_10369677_SNP [dm3] 3L_10376577_SNP [dm6]	T	A	5.426e^-4	0.971	INTERGENIC
3L	10770819	3L_10770819_SNP [dm3] 3L_10777719_SNP [dm6]	T	A	5.426e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	19666923	3L_19666923_SNP [dm3] 3L_19673823_SNP [dm6]	C	A	5.426e^-4	0.971	INTERGENIC
X	9225231	X_9225231_SNP [dm3] X_9331198_SNP [dm6]	A	C	5.426e^-4	0.971	UTR_3_PRIME CG34449 UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3R	21862388	3R_21862388_SNP [dm3] 3R_26036666_SNP [dm6]	G	T	5.430e^-4	0.971	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19629378	3R_19629378_DEL [dm3] 3R_23803656_DEL [dm6]	GG	G	5.430e^-4	0.971	UPSTREAM CG34355 INTRON CG33111
2R	2083068	2R_2083068_SNP [dm3] 2R_6195563_SNP [dm6]	A	G	5.431e^-4	0.971	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	1451429	X_1451429_SNP [dm3] X_1557396_SNP [dm6]	G	A	5.434e^-4	0.971	SYNONYMOUS_CODING Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1451453	X_1451453_SNP [dm3] X_1557420_SNP [dm6]	C	G	5.434e^-4	0.971	SYNONYMOUS_CODING Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10085995	2L_10085995_SNP [dm3] 2L_10085995_SNP [dm6]	G	A	5.436e^-4	0.971	INTRON CG44153
2L	10085998	2L_10085998_SNP [dm3] 2L_10085998_SNP [dm6]	T	C	5.436e^-4	0.971	INTRON CG44153
2L	10086002	2L_10086002_SNP [dm3] 2L_10086002_SNP [dm6]	A	G	5.436e^-4	0.971	INTRON CG44153
3L	8904097	3L_8904097_SNP [dm3] 3L_8910997_SNP [dm6]	G	A	5.440e^-4	0.971	UTR_5_PRIME mfr INTRON mfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24411643	3R_24411643_INS [dm3] 3R_28585921_INS [dm6]	C	CCTGGC	5.441e^-4	0.971	UPSTREAM MRE23 & 1 other INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	19253405	3R_19253405_SNP [dm3] 3R_23427683_SNP [dm6]	T	C	5.456e^-4	0.971	INTRON CG4374
3R	19253415	3R_19253415_SNP [dm3] 3R_23427693_SNP [dm6]	G	A	5.456e^-4	0.971	INTRON CG4374
3R	19253433	3R_19253433_SNP [dm3] 3R_23427711_SNP [dm6]	T	C	5.456e^-4	0.971	INTRON CG4374
3R	15458855	3R_15458855_SNP [dm3] 3R_19633133_SNP [dm6]	A	C	5.459e^-4	0.971	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4067457	3L_4067457_SNP [dm3] 3L_4067457_SNP [dm6]	T	C	5.468e^-4	0.971	SYNONYMOUS_CODING wit
2L	5682618	2L_5682618_SNP [dm3] 2L_5682618_SNP [dm6]	C	T	5.469e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	849423	2L_849423_SNP [dm3] 2L_849423_SNP [dm6]	T	G	5.477e^-4	0.971	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16056813	2R_16056813_SNP [dm3] 2R_20169308_SNP [dm6]	A	T	5.505e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9300360	X_9300360_SNP [dm3] X_9406327_SNP [dm6]	C	A	5.506e^-4	0.971	INTRON mgl
3R	23119341	3R_23119341_SNP [dm3] 3R_27293619_SNP [dm6]	T	G	5.538e^-4	0.971	DOWNSTREAM CG3339 INTERGENIC
2R	15679382	2R_15679382_SNP [dm3] 2R_19791877_SNP [dm6]	A	T	5.557e^-4	0.971	INTERGENIC
3L	8676335	3L_8676335_SNP [dm3] 3L_8683235_SNP [dm6]	G	A	5.564e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	5.566e^-4	0.971	INTRON CG32103
2R	17344479	2R_17344479_SNP [dm3] 2R_21456974_SNP [dm6]	T	C	5.568e^-4	0.971	INTRON Sdc
X	3820054	X_3820054_SNP [dm3] X_3926021_SNP [dm6]	C	T	5.583e^-4	0.971	INTRON CG42541
2L	915137	2L_915137_SNP [dm3] 2L_915137_SNP [dm6]	C	G	5.585e^-4	0.971	NON_SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	5976363	X_5976363_SNP [dm3] X_6082330_SNP [dm6]	A	C	5.590e^-4	0.971	UPSTREAM CG4660 DOWNSTREAM raptor & 1 other INTERGENIC
3R	20410005	3R_20410005_SNP [dm3] 3R_24584283_SNP [dm6]	T	G	5.634e^-4	0.971	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9383663	2L_9383663_SNP [dm3] 2L_9383663_SNP [dm6]	C	T	5.667e^-4	0.971	INTRON Shawl
X	8116851	X_8116851_SNP [dm3] X_8222818_SNP [dm6]	A	G	5.692e^-4	0.971	INTRON sdt	TF binding site mE1_TFBS_bab1
3R	22243862	3R_22243862_SNP [dm3] 3R_26418140_SNP [dm6]	T	G	5.699e^-4	0.971	INTERGENIC
3L	15193460	3L_15193460_SNP [dm3] 3L_15200360_SNP [dm6]	C	A	5.704e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	2503397	3L_2503397_SNP [dm3] 3L_2503397_SNP [dm6]	A	G	5.709e^-4	0.971	UTR_5_PRIME CG16758 UPSTREAM CR45425 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2620242	3L_2620242_SNP [dm3] 3L_2620242_SNP [dm6]	T	A	5.709e^-4	0.971	INTRON Pxn
3L	2620249	3L_2620249_SNP [dm3] 3L_2620249_SNP [dm6]	G	C	5.709e^-4	0.971	INTRON Pxn
X	21066280	X_21066280_SNP [dm3] X_21195253_SNP [dm6]	G	A	5.709e^-4	0.971	DOWNSTREAM CG14579 INTERGENIC
3R	18673323	3R_18673323_SNP [dm3] 3R_22847601_SNP [dm6]	A	T	5.710e^-4	0.971	INTERGENIC
3R	21284231	3R_21284231_SNP [dm3] 3R_25458509_SNP [dm6]	C	A	5.743e^-4	0.971	INTRON Fur1
3L	9515692	3L_9515692_SNP [dm3] 3L_9522592_SNP [dm6]	G	A	5.744e^-4	0.971	INTRON CG33700
3R	18618259	3R_18618259_SNP [dm3] 3R_22792537_SNP [dm6]	A	C	5.751e^-4	0.971	SYNONYMOUS_CODING CG7029	TF binding site mE1_TFBS_cad
3R	15397249	3R_15397249_SNP [dm3] 3R_19571527_SNP [dm6]	G	T	5.763e^-4	0.971	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2171108	3L_2171108_SNP [dm3] 3L_2171108_SNP [dm6]	T	C	5.763e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
X	18168959	X_18168959_SNP [dm3] X_18274926_SNP [dm6]	C	T	5.773e^-4	0.971	INTERGENIC
3L	8199232	3L_8199232_SNP [dm3] 3L_8206132_SNP [dm6]	C	T	5.775e^-4	0.971	INTERGENIC
3L	9940033	3L_9940033_SNP [dm3] 3L_9946933_SNP [dm6]	T	G	5.775e^-4	0.971	INTRON CG34356
2L	4360550	2L_4360550_SNP [dm3] 2L_4360550_SNP [dm6]	C	A	5.798e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10795083	2R_10795083_SNP [dm3] 2R_14907578_SNP [dm6]	T	G	5.821e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795155	2R_10795155_SNP [dm3] 2R_14907650_SNP [dm6]	G	A	5.821e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12413346	2R_12413346_SNP [dm3] 2R_16525841_SNP [dm6]	G	C	5.821e^-4	0.971	INTRON Sema-2a
2R	12413967	2R_12413967_SNP [dm3] 2R_16526462_SNP [dm6]	G	A	5.821e^-4	0.971	INTRON Sema-2a
3R	10113434	3R_10113434_SNP [dm3] 3R_14287712_SNP [dm6]	T	C	5.825e^-4	0.971	UPSTREAM trx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23370161	3R_23370161_SNP [dm3] 3R_27544439_SNP [dm6]	T	C	5.840e^-4	0.971	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
2R	19167560	2R_19167560_SNP [dm3] 2R_23280037_SNP [dm6]	A	G	5.846e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2424800	3L_2424800_SNP [dm3] 3L_2424800_SNP [dm6]	C	G	5.857e^-4	0.971	INTRON CG45186
3L	2424801	3L_2424801_SNP [dm3] 3L_2424801_SNP [dm6]	T	G	5.857e^-4	0.971	INTRON CG45186
3L	15193576	3L_15193576_SNP [dm3] 3L_15200476_SNP [dm6]	T	A	5.861e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	18758494	3R_18758494_SNP [dm3] 3R_22932772_SNP [dm6]	G	C	5.865e^-4	0.971	INTRON klg
3R	24509889	3R_24509889_SNP [dm3] 3R_28684167_SNP [dm6]	C	A	5.865e^-4	0.971	INTRON CG9990
3R	24509890	3R_24509890_SNP [dm3] 3R_28684168_SNP [dm6]	C	T	5.865e^-4	0.971	INTRON CG9990
3L	2008237	3L_2008237_INS [dm3] 3L_2008237_INS [dm6]	A	AC	5.866e^-4	0.971	DOWNSTREAM CR44535 INTERGENIC
X	11123328	X_11123328_DEL [dm3] X_11229295_DEL [dm6]	TTCTGCT	T	5.867e^-4	0.971	INTRON CG44422
3L	10635114	3L_10635114_SNP [dm3] 3L_10642014_SNP [dm6]	T	A	5.889e^-4	0.971	UTR_5_PRIME CG14154 INTRON CG32066 & 1 other
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	5.894e^-4	0.971	INTRON 5-HT1A
X	5434074	X_5434074_SNP [dm3] X_5540041_SNP [dm6]	C	G	5.919e^-4	0.971	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	22135667	3R_22135667_SNP [dm3] 3R_26309945_SNP [dm6]	A	C	5.934e^-4	0.971	INTERGENIC
3R	25918246	3R_25918246_SNP [dm3] 3R_30092524_SNP [dm6]	C	A	5.937e^-4	0.971	INTRON sima
3L	10722323	3L_10722323_SNP [dm3] 3L_10729223_SNP [dm6]	T	A	5.942e^-4	0.971	INTERGENIC
3L	10722324	3L_10722324_SNP [dm3] 3L_10729224_SNP [dm6]	T	A	5.942e^-4	0.971	INTERGENIC
3L	12231843	3L_12231843_SNP [dm3] 3L_12238743_SNP [dm6]	T	A	5.958e^-4	0.971	INTRON app
2R	20098319	2R_20098319_SNP [dm3] 2R_24210796_SNP [dm6]	C	T	5.960e^-4	0.971	INTERGENIC
2L	5693762	2L_5693762_SNP [dm3] 2L_5693762_SNP [dm6]	T	A	5.996e^-4	0.971	INTERGENIC
3L	12637814	3L_12637814_SNP [dm3] 3L_12644714_SNP [dm6]	A	G	5.997e^-4	0.971	INTRON CR32111	regulatory region REDfly_CRMs
2R	16331679	2R_16331679_SNP [dm3] 2R_20444174_SNP [dm6]	T	C	6.016e^-4	0.971	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24491693	3R_24491693_SNP [dm3] 3R_28665971_SNP [dm6]	T	C	6.020e^-4	0.971	INTERGENIC
3R	18609764	3R_18609764_SNP [dm3] 3R_22784042_SNP [dm6]	T	G	6.034e^-4	0.971	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18970568	3R_18970568_SNP [dm3] 3R_23144846_SNP [dm6]	A	G	6.037e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	15193574	3L_15193574_SNP [dm3] 3L_15200474_SNP [dm6]	A	C	6.041e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	14171743	2R_14171743_SNP [dm3] 2R_18284238_SNP [dm6]	C	A	6.048e^-4	0.971	SYNONYMOUS_CODING sbb DOWNSTREAM sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22706483	3R_22706483_SNP [dm3] 3R_26880761_SNP [dm6]	C	G	6.068e^-4	0.971	SYNONYMOUS_CODING ro UPSTREAM T48 DOWNSTREAM CG5500	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2172014	3L_2172014_SNP [dm3] 3L_2172014_SNP [dm6]	A	C	6.069e^-4	0.971	DOWNSTREAM CG15820 EXON CR15821
2L	10676539	2L_10676539_SNP [dm3] 2L_10676539_SNP [dm6]	T	C	6.076e^-4	0.971	UPSTREAM CG17104 INTERGENIC
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	6.079e^-4	0.971	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	20799234	3R_20799234_SNP [dm3] 3R_24973512_SNP [dm6]	G	A	6.085e^-4	0.971	INTERGENIC
3R	22242017	3R_22242017_SNP [dm3] 3R_26416295_SNP [dm6]	G	T	6.091e^-4	0.971	DOWNSTREAM CG5432 INTERGENIC
3R	22242029	3R_22242029_SNP [dm3] 3R_26416307_SNP [dm6]	G	A	6.091e^-4	0.971	DOWNSTREAM CG5432 INTERGENIC
X	5564167	X_5564167_SNP [dm3] X_5670134_SNP [dm6]	T	G	6.092e^-4	0.971	SYNONYMOUS_CODING CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4169301	2L_4169301_SNP [dm3] 2L_4169301_SNP [dm6]	G	A	6.102e^-4	0.971	INTERGENIC
3L	15479369	3L_15479369_SNP [dm3] 3L_15486269_SNP [dm6]	G	A	6.110e^-4	0.971	UPSTREAM Ran-like INTERGENIC
2R	6135741	2R_6135741_SNP [dm3] 2R_10248236_SNP [dm6]	G	C	6.110e^-4	0.971	SYNONYMOUS_CODING CG12914 UPSTREAM CG12209 & 1 other
2R	14461837	2R_14461837_SNP [dm3] 2R_18574332_SNP [dm6]	G	T	6.111e^-4	0.971	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13810944	3R_13810944_SNP [dm3] 3R_17985222_SNP [dm6]	A	G	6.115e^-4	0.971	INTRON cpo
3L	19463719	3L_19463719_SNP [dm3] 3L_19470619_SNP [dm6]	G	A	6.117e^-4	0.971	INTERGENIC	transposable element FlyBase
3L	9305050	3L_9305050_DEL [dm3] 3L_9311950_DEL [dm6]	GTGACGCTCTG...	G	6.118e^-4	0.971	INTERGENIC
2L	10676600	2L_10676600_SNP [dm3] 2L_10676600_SNP [dm6]	T	C	6.127e^-4	0.971	UPSTREAM CG17104 INTERGENIC
3R	16778707	3R_16778707_SNP [dm3] 3R_20952985_SNP [dm6]	C	T	6.131e^-4	0.971	INTRON Atpalpha	TF binding site BDTNP1_TFBS_da
X	4426830	X_4426830_SNP [dm3] X_4532797_SNP [dm6]	T	C	6.132e^-4	0.971	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_chinmo
2R	14936809	2R_14936809_SNP [dm3] 2R_19049304_SNP [dm6]	A	G	6.138e^-4	0.971	INTERGENIC
3L	2162282	3L_2162282_SNP [dm3] 3L_2162282_SNP [dm6]	T	A	6.143e^-4	0.971	INTRON CG15822
3L	2162283	3L_2162283_SNP [dm3] 3L_2162283_SNP [dm6]	C	G	6.143e^-4	0.971	INTRON CG15822
3L	2163115	3L_2163115_SNP [dm3] 3L_2163115_SNP [dm6]	C	A	6.143e^-4	0.971	INTRON CG15822
3L	2163270	3L_2163270_SNP [dm3] 3L_2163270_SNP [dm6]	C	G	6.143e^-4	0.971	INTRON CG15822
3L	2163782	3L_2163782_SNP [dm3] 3L_2163782_SNP [dm6]	C	T	6.143e^-4	0.971	UTR_5_PRIME CG15822
3L	2163826	3L_2163826_SNP [dm3] 3L_2163826_SNP [dm6]	C	A	6.143e^-4	0.971	UTR_5_PRIME CG15822
3L	2163884	3L_2163884_SNP [dm3] 3L_2163884_SNP [dm6]	A	G	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2163915	3L_2163915_SNP [dm3] 3L_2163915_SNP [dm6]	T	C	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2164271	3L_2164271_SNP [dm3] 3L_2164271_SNP [dm6]	C	T	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2164273	3L_2164273_SNP [dm3] 3L_2164273_SNP [dm6]	A	T	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2164502	3L_2164502_SNP [dm3] 3L_2164502_SNP [dm6]	A	T	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2164510	3L_2164510_SNP [dm3] 3L_2164510_SNP [dm6]	T	G	6.143e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	2166724	3L_2166724_SNP [dm3] 3L_2166724_SNP [dm6]	G	A	6.143e^-4	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2166976	3L_2166976_SNP [dm3] 3L_2166976_SNP [dm6]	C	T	6.143e^-4	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2167055	3L_2167055_SNP [dm3] 3L_2167055_SNP [dm6]	T	C	6.143e^-4	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2167299	3L_2167299_SNP [dm3] 3L_2167299_SNP [dm6]	G	A	6.143e^-4	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2167522	3L_2167522_SNP [dm3] 3L_2167522_SNP [dm6]	G	T	6.143e^-4	0.971	DOWNSTREAM CG15879 INTERGENIC
3L	2167738	3L_2167738_SNP [dm3] 3L_2167738_SNP [dm6]	A	C	6.143e^-4	0.971	UTR_3_PRIME CG15879
3L	2168029	3L_2168029_SNP [dm3] 3L_2168029_SNP [dm6]	G	C	6.143e^-4	0.971	SYNONYMOUS_CODING CG15879
3L	2168092	3L_2168092_SNP [dm3] 3L_2168092_SNP [dm6]	T	A	6.143e^-4	0.971	SYNONYMOUS_CODING CG15879
3L	2168347	3L_2168347_SNP [dm3] 3L_2168347_SNP [dm6]	G	A	6.143e^-4	0.971	SYNONYMOUS_CODING CG15879
3L	2169193	3L_2169193_SNP [dm3] 3L_2169193_SNP [dm6]	A	G	6.143e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3L	2169406	3L_2169406_SNP [dm3] 3L_2169406_SNP [dm6]	C	G	6.143e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3L	2169429	3L_2169429_INS [dm3] 3L_2169429_INS [dm6]	GT	AAATGATTA	6.143e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3L	2169551	3L_2169551_SNP [dm3] 3L_2169551_SNP [dm6]	T	C	6.143e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3L	2169746	3L_2169746_SNP [dm3] 3L_2169746_SNP [dm6]	A	C	6.143e^-4	0.971	NON_SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3L	2170201	3L_2170201_SNP [dm3] 3L_2170201_SNP [dm6]	T	C	6.143e^-4	0.971	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2170263	3L_2170263_SNP [dm3] 3L_2170263_SNP [dm6]	C	A	6.143e^-4	0.971	NON_SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2170294	3L_2170294_SNP [dm3] 3L_2170294_SNP [dm6]	G	A	6.143e^-4	0.971	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2170975	3L_2170975_SNP [dm3] 3L_2170975_SNP [dm6]	A	C	6.143e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	2170976	3L_2170976_SNP [dm3] 3L_2170976_SNP [dm6]	T	A	6.143e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	2171092	3L_2171092_SNP [dm3] 3L_2171092_SNP [dm6]	C	T	6.143e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	2172144	3L_2172144_SNP [dm3] 3L_2172144_SNP [dm6]	G	C	6.143e^-4	0.971	DOWNSTREAM CG15820 INTRON CR15821
3L	2172845	3L_2172845_SNP [dm3] 3L_2172845_SNP [dm6]	A	C	6.143e^-4	0.971	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC
3L	2172899	3L_2172899_SNP [dm3] 3L_2172899_SNP [dm6]	G	A	6.143e^-4	0.971	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC
3L	2173687	3L_2173687_SNP [dm3] 3L_2173687_SNP [dm6]	A	G	6.143e^-4	0.971	SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
X	14352211	X_14352211_SNP [dm3] X_14458178_SNP [dm6]	T	C	6.143e^-4	0.971	INTRON dpr8
3R	17449888	3R_17449888_SNP [dm3] 3R_21624166_SNP [dm6]	A	G	6.148e^-4	0.971	INTRON E2f
3R	24824071	3R_24824071_SNP [dm3] 3R_28998349_SNP [dm6]	G	A	6.153e^-4	0.971	INTRON wat
2L	7623129	2L_7623129_SNP [dm3] 2L_7623129_SNP [dm6]	T	C	6.163e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14090608	2R_14090608_SNP [dm3] 2R_18203103_SNP [dm6]	A	T	6.164e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5151546	X_5151546_SNP [dm3] X_5257513_SNP [dm6]	C	A	6.181e^-4	0.971	INTERGENIC
2L	8182261	2L_8182261_SNP [dm3] 2L_8182261_SNP [dm6]	T	C	6.191e^-4	0.971	DOWNSTREAM Piezo INTRON Piezo
2R	9439741	2R_9439741_SNP [dm3] 2R_13552236_SNP [dm6]	G	C	6.192e^-4	0.971	NON_SYNONYMOUS_CODING CG33156 START_GAINED CG33156 UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5555089	X_5555089_SNP [dm3] X_5661056_SNP [dm6]	G	T	6.206e^-4	0.971	NON_SYNONYMOUS_CODING CG42265	TF binding site mE1_TFBS_chinmo
2R	12114374	2R_12114374_SNP [dm3] 2R_16226869_SNP [dm6]	A	T	6.207e^-4	0.971	UPSTREAM CG15706 INTRON CG15706 & 1 other
2L	9093372	2L_9093372_SNP [dm3] 2L_9093372_SNP [dm6]	C	T	6.212e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	17615606	3R_17615606_SNP [dm3] 3R_21789884_SNP [dm6]	C	T	6.215e^-4	0.971	INTRON CASK	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9477925	2R_9477925_DEL [dm3] 2R_13590420_DEL [dm6]	TCTAATATAACAT...	T	6.222e^-4	0.971	INTRON CG6191 & 1 other
2R	6139417	2R_6139417_SNP [dm3] 2R_10251912_SNP [dm6]	G	T	6.222e^-4	0.971	INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10453762	2R_10453762_SNP [dm3] 2R_14566257_SNP [dm6]	A	T	6.246e^-4	0.971	INTRON ttv
2L	7638644	2L_7638644_SNP [dm3] 2L_7638644_SNP [dm6]	A	G	6.248e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12414381	2R_12414381_SNP [dm3] 2R_16526876_SNP [dm6]	A	G	6.269e^-4	0.971	INTRON Sema-2a
2R	12890981	2R_12890981_SNP [dm3] 2R_17003476_SNP [dm6]	G	A	6.269e^-4	0.971	NON_SYNONYMOUS_CODING CG6796 DOWNSTREAM NiPp1
3L	624408	3L_624408_SNP [dm3] 3L_624408_SNP [dm6]	T	A	6.269e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5195632	X_5195632_SNP [dm3] X_5301599_SNP [dm6]	C	T	6.271e^-4	0.971	SYNONYMOUS_CODING CG42749	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8541145	X_8541145_DEL [dm3] X_8647112_DEL [dm6]	TCAAT	T	6.272e^-4	0.971	INTRON oc
3L	12231794	3L_12231794_SNP [dm3] 3L_12238694_SNP [dm6]	T	C	6.274e^-4	0.971	INTRON app
3L	12231798	3L_12231798_SNP [dm3] 3L_12238698_SNP [dm6]	A	G	6.274e^-4	0.971	INTRON app
2L	7956358	2L_7956358_SNP [dm3] 2L_7956358_SNP [dm6]	A	G	6.287e^-4	0.971	INTRON Snoo	TF binding site mE1_TFBS_inv
X	3194956	X_3194956_SNP [dm3] X_3300923_SNP [dm6]	G	A	6.294e^-4	0.971	INTRON dnc
2L	17444643	2L_17444643_SNP [dm3] 2L_17444643_SNP [dm6]	A	G	6.310e^-4	0.971	INTRON dl
2L	20809751	2L_20809751_SNP [dm3] 2L_20809751_SNP [dm6]	T	C	6.326e^-4	0.971	UPSTREAM CG9328 INTRON CG9328	TF binding site mE1_TFBS_chinmo
2L	3598033	2L_3598033_INS [dm3] 2L_3598033_INS [dm6]	T	TCG	6.326e^-4	0.971	INTERGENIC
2L	3598036	2L_3598036_SNP [dm3] 2L_3598036_SNP [dm6]	T	A	6.326e^-4	0.971	INTERGENIC
2L	3598040	2L_3598040_SNP [dm3] 2L_3598040_SNP [dm6]	G	A	6.326e^-4	0.971	INTERGENIC
2L	3598043	2L_3598043_SNP [dm3] 2L_3598043_SNP [dm6]	T	A	6.326e^-4	0.971	INTERGENIC
2L	9092794	2L_9092794_SNP [dm3] 2L_9092794_SNP [dm6]	C	T	6.326e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9092935	2L_9092935_SNP [dm3] 2L_9092935_SNP [dm6]	A	G	6.326e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	4686978	2R_4686978_SNP [dm3] 2R_8799473_SNP [dm6]	C	G	6.326e^-4	0.971	INTRON sns	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5564339	2R_5564339_SNP [dm3] 2R_9676834_SNP [dm6]	G	T	6.326e^-4	0.971	INTRON Mmp2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11950133	3L_11950133_SNP [dm3] 3L_11957033_SNP [dm6]	A	C	6.351e^-4	0.971	SYNONYMOUS_CODING CG11570 DOWNSTREAM CG7248
2R	12480694	2R_12480694_SNP [dm3] 2R_16593189_SNP [dm6]	G	C	6.362e^-4	0.971	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23151230	3R_23151230_SNP [dm3] 3R_27325508_SNP [dm6]	C	T	6.364e^-4	0.971	INTERGENIC
2R	15102358	2R_15102358_SNP [dm3] 2R_19214853_SNP [dm6]	G	A	6.381e^-4	0.971	INTRON hppy
2L	735523	2L_735523_SNP [dm3] 2L_735523_SNP [dm6]	C	T	6.391e^-4	0.971	INTERGENIC
3R	11711032	3R_11711032_SNP [dm3] 3R_15885310_SNP [dm6]	G	T	6.398e^-4	0.971	INTERGENIC
3L	11619365	3L_11619365_SNP [dm3] 3L_11626265_SNP [dm6]	T	G	6.401e^-4	0.971	UPSTREAM PCID2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4407487	2L_4407487_SNP [dm3] 2L_4407487_SNP [dm6]	C	G	6.402e^-4	0.971	NON_SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5137958	X_5137958_SNP [dm3] X_5243925_SNP [dm6]	G	A	6.407e^-4	0.971	NON_SYNONYMOUS_CODING rg INTRON CG15465 & 1 other
3L	1620333	3L_1620333_SNP [dm3] 3L_1620333_SNP [dm6]	A	C	6.413e^-4	0.971	UTR_3_PRIME CG33230 INTRON ABCB7
2R	13651038	2R_13651038_SNP [dm3] 2R_17763533_SNP [dm6]	G	T	6.440e^-4	0.971	SYNONYMOUS_CODING CG5009
2L	5973833	2L_5973833_SNP [dm3] 2L_5973833_SNP [dm6]	T	C	6.449e^-4	0.971	INTRON chic
2R	9443975	2R_9443975_SNP [dm3] 2R_13556470_SNP [dm6]	C	T	6.457e^-4	0.971	SYNONYMOUS_CODING link DOWNSTREAM Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9243226	2R_9243226_SNP [dm3] 2R_13355721_SNP [dm6]	C	G	6.458e^-4	0.971	INTERGENIC
2R	9477914	2R_9477914_INS [dm3] 2R_13590409_INS [dm6]	C	CCTGC	6.475e^-4	0.971	INTRON CG6191 & 1 other
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	6.483e^-4	0.971	INTRON rg & 1 other
2L	10486572	2L_10486572_SNP [dm3] 2L_10486572_SNP [dm6]	C	T	6.488e^-4	0.971	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13265327	3R_13265327_SNP [dm3] 3R_17439605_SNP [dm6]	T	G	6.490e^-4	0.971	INTRON CG5873 & 1 other
3L	2424809	3L_2424809_SNP [dm3] 3L_2424809_SNP [dm6]	C	T	6.501e^-4	0.971	INTRON CG45186
2L	16187520	2L_16187520_SNP [dm3] 2L_16187520_SNP [dm6]	A	G	6.524e^-4	0.971	UTR_3_PRIME Ca-alpha1D INTRON Ca-alpha1D
2R	9803607	2R_9803607_SNP [dm3] 2R_13916102_SNP [dm6]	T	G	6.527e^-4	0.971	INTRON shot
2L	12801692	2L_12801692_SNP [dm3] 2L_12801692_SNP [dm6]	A	C	6.529e^-4	0.971	INTERGENIC
2L	8754551	2L_8754551_SNP [dm3] 2L_8754551_SNP [dm6]	G	A	6.537e^-4	0.971	INTERGENIC
3L	14536106	3L_14536106_SNP [dm3] 3L_14543006_SNP [dm6]	A	C	6.541e^-4	0.971	INTRON CG9238
3L	14536121	3L_14536121_SNP [dm3] 3L_14543021_SNP [dm6]	C	T	6.541e^-4	0.971	INTRON CG9238
3L	5277866	3L_5277866_SNP [dm3] 3L_5284766_SNP [dm6]	C	T	6.541e^-4	0.971	INTERGENIC
3L	2860852	3L_2860852_SNP [dm3] 3L_2860852_SNP [dm6]	C	T	6.546e^-4	0.971	INTRON CG43444
3R	6309456	3R_6309456_SNP [dm3] 3R_10483734_SNP [dm6]	G	A	6.555e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3735854	2L_3735854_SNP [dm3] 2L_3735854_SNP [dm6]	A	G	6.557e^-4	0.971	INTRON CG10019
3L	14204517	3L_14204517_SNP [dm3] 3L_14211417_SNP [dm6]	T	A	6.557e^-4	0.971	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4246415	2L_4246415_SNP [dm3] 2L_4246415_SNP [dm6]	A	G	6.584e^-4	0.971	EXON CR44059
3R	25924543	3R_25924543_SNP [dm3] 3R_30098821_SNP [dm6]	C	T	6.590e^-4	0.971	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1758338	2L_1758338_INS [dm3] 2L_1758338_INS [dm6]	T	TATACTCATTT...	6.593e^-4	0.971	UTR_3_PRIME CG17650	regulatory region REDfly_CRMs
3R	24368268	3R_24368268_SNP [dm3] 3R_28542546_SNP [dm6]	A	G	6.596e^-4	0.971	SYNONYMOUS_CODING CG12413
2R	14421389	2R_14421389_SNP [dm3] 2R_18533884_SNP [dm6]	A	G	6.612e^-4	0.971	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2171117	3L_2171117_SNP [dm3] 3L_2171117_SNP [dm6]	C	A	6.614e^-4	0.971	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
2L	3517706	2L_3517706_SNP [dm3] 2L_3517706_SNP [dm6]	A	G	6.626e^-4	0.971	SYNONYMOUS_CODING CG3213 DOWNSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9885776	2L_9885776_SNP [dm3] 2L_9885776_SNP [dm6]	T	C	6.632e^-4	0.971	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
2R	2067924	2R_2067924_SNP [dm3] 2R_6180419_SNP [dm6]	T	C	6.639e^-4	0.971	DOWNSTREAM CG11211 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	19423965	2L_19423965_SNP [dm3] 2L_19423965_SNP [dm6]	T	C	6.642e^-4	0.971	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	12414328	2R_12414328_SNP [dm3] 2R_16526823_SNP [dm6]	G	A	6.644e^-4	0.971	INTRON Sema-2a
2R	12414377	2R_12414377_SNP [dm3] 2R_16526872_SNP [dm6]	G	A	6.644e^-4	0.971	INTRON Sema-2a
2R	12414436	2R_12414436_SNP [dm3] 2R_16526931_SNP [dm6]	A	G	6.644e^-4	0.971	INTRON Sema-2a
2R	12414438	2R_12414438_SNP [dm3] 2R_16526933_SNP [dm6]	A	T	6.644e^-4	0.971	INTRON Sema-2a
2R	12414450	2R_12414450_SNP [dm3] 2R_16526945_SNP [dm6]	C	T	6.644e^-4	0.971	INTRON Sema-2a
2R	12890980	2R_12890980_SNP [dm3] 2R_17003475_SNP [dm6]	G	T	6.644e^-4	0.971	SYNONYMOUS_CODING CG6796 DOWNSTREAM NiPp1
2R	12891010	2R_12891010_SNP [dm3] 2R_17003505_SNP [dm6]	C	G	6.644e^-4	0.971	SYNONYMOUS_CODING CG6796 DOWNSTREAM NiPp1
2R	12891087	2R_12891087_SNP [dm3] 2R_17003582_SNP [dm6]	A	C	6.644e^-4	0.971	UTR_3_PRIME CG6796 & 1 other
3L	14255804	3L_14255804_SNP [dm3] 3L_14262704_SNP [dm6]	G	T	6.644e^-4	0.971	INTERGENIC
3L	15072341	3L_15072341_SNP [dm3] 3L_15079241_SNP [dm6]	A	G	6.644e^-4	0.971	UTR_5_PRIME cp309 UPSTREAM Or71a INTRON cp309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16195930	3L_16195930_SNP [dm3] 3L_16202830_SNP [dm6]	A	T	6.644e^-4	0.971	DOWNSTREAM CG33690 INTERGENIC
3L	16442520	3L_16442520_SNP [dm3] 3L_16449420_SNP [dm6]	G	A	6.644e^-4	0.971	INTRON CG33158 & 1 other
3L	17332234	3L_17332234_SNP [dm3] 3L_17339134_SNP [dm6]	C	T	6.644e^-4	0.971	UTR_5_PRIME CG6479 DOWNSTREAM tRNA:CR32173 INTRON CG6479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3859757	3L_3859757_SNP [dm3] 3L_3859757_SNP [dm6]	G	T	6.644e^-4	0.971	INTRON Awh	TF binding site mE1_TFBS_cad
X	14755668	X_14755668_SNP [dm3] X_14861635_SNP [dm6]	G	A	6.644e^-4	0.971	INTRON Flo2
X	14756163	X_14756163_SNP [dm3] X_14862130_SNP [dm6]	A	G	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14756330	X_14756330_SNP [dm3] X_14862297_SNP [dm6]	G	T	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14756338	X_14756338_SNP [dm3] X_14862305_SNP [dm6]	T	G	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14756381	X_14756381_SNP [dm3] X_14862348_SNP [dm6]	C	T	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14756636	X_14756636_SNP [dm3] X_14862603_SNP [dm6]	T	C	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14756809	X_14756809_SNP [dm3] X_14862776_SNP [dm6]	G	A	6.644e^-4	0.971	DOWNSTREAM CG9518 INTRON Flo2
X	14757325	X_14757325_SNP [dm3] X_14863292_SNP [dm6]	T	A	6.644e^-4	0.971	UTR_3_PRIME CG9518 INTRON Flo2
X	14758427	X_14758427_SNP [dm3] X_14864394_SNP [dm6]	G	A	6.644e^-4	0.971	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site mE1_TFBS_sens
X	14758445	X_14758445_SNP [dm3] X_14864412_SNP [dm6]	A	G	6.644e^-4	0.971	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site mE1_TFBS_sens
X	14758460	X_14758460_SNP [dm3] X_14864427_SNP [dm6]	A	G	6.644e^-4	0.971	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site mE1_TFBS_sens
3R	22288808	3R_22288808_SNP [dm3] 3R_26463086_SNP [dm6]	G	A	6.660e^-4	0.971	INTRON CG5455	TF binding site mE1_TFBS_Trl
3L	4547232	3L_4547232_SNP [dm3] 3L_4547232_SNP [dm6]	C	T	6.663e^-4	0.971	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	821605	3L_821605_SNP [dm3] 3L_821605_SNP [dm6]	C	T	6.666e^-4	0.971	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19622288	3R_19622288_SNP [dm3] 3R_23796566_SNP [dm6]	G	A	6.679e^-4	0.971	INTRON mbc	TF binding site mE1_TFBS_sens
3L	5613183	3L_5613183_SNP [dm3] 3L_5620083_SNP [dm6]	A	G	6.684e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	20906762	3R_20906762_SNP [dm3] 3R_25081040_SNP [dm6]	A	T	6.692e^-4	0.971	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11474357	3L_11474357_SNP [dm3] 3L_11481257_SNP [dm6]	A	C	6.697e^-4	0.971	INTERGENIC
3R	24523394	3R_24523394_SNP [dm3] 3R_28697672_SNP [dm6]	C	A	6.702e^-4	0.971	INTRON htt
3R	11239885	3R_11239885_SNP [dm3] 3R_15414163_SNP [dm6]	A	G	6.702e^-4	0.971	SYNONYMOUS_CODING Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24703147	3R_24703147_SNP [dm3] 3R_28877425_SNP [dm6]	C	T	6.703e^-4	0.971	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo
X	5698226	X_5698226_SNP [dm3] X_5804193_SNP [dm6]	G	A	6.705e^-4	0.971	UPSTREAM Cpr5C INTERGENIC
X	5564183	X_5564183_SNP [dm3] X_5670150_SNP [dm6]	G	C	6.708e^-4	0.971	UTR_3_PRIME CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl
X	18087028	X_18087028_SNP [dm3] X_18192995_SNP [dm6]	G	A	6.719e^-4	0.971	INTRON Frq2
X	18087073	X_18087073_SNP [dm3] X_18193040_SNP [dm6]	A	T	6.719e^-4	0.971	INTRON Frq2
X	18087075	X_18087075_SNP [dm3] X_18193042_SNP [dm6]	G	A	6.719e^-4	0.971	INTRON Frq2
X	18087077	X_18087077_SNP [dm3] X_18193044_SNP [dm6]	T	C	6.719e^-4	0.971	INTRON Frq2
X	18087086	X_18087086_SNP [dm3] X_18193053_SNP [dm6]	A	G	6.719e^-4	0.971	INTRON Frq2
X	18087099	X_18087099_DEL [dm3] X_18193066_DEL [dm6]	TGTAGTATCGCCAACATATT...	T	6.719e^-4	0.971	INTRON Frq2
2R	3474767	2R_3474767_SNP [dm3] 2R_7587262_SNP [dm6]	A	T	6.729e^-4	0.971	UPSTREAM blow DOWNSTREAM CG1360 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16332751	2R_16332751_SNP [dm3] 2R_20445246_SNP [dm6]	T	C	6.768e^-4	0.971	INTRON CG12484
3L	11769842	3L_11769842_SNP [dm3] 3L_11776742_SNP [dm6]	A	T	6.783e^-4	0.971	UPSTREAM CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad
3L	10405595	3L_10405595_SNP [dm3] 3L_10412495_SNP [dm6]	C	T	6.793e^-4	0.971	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	10405614	3L_10405614_SNP [dm3] 3L_10412514_SNP [dm6]	C	G	6.793e^-4	0.971	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	17651321	3R_17651321_SNP [dm3] 3R_21825599_SNP [dm6]	A	C	6.794e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	19253434	3R_19253434_SNP [dm3] 3R_23427712_SNP [dm6]	T	C	6.807e^-4	0.971	INTRON CG4374
3R	20410290	3R_20410290_SNP [dm3] 3R_24584568_SNP [dm6]	C	T	6.809e^-4	0.971	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3R	12237649	3R_12237649_SNP [dm3] 3R_16411927_SNP [dm6]	G	A	6.811e^-4	0.971	INTERGENIC
3L	2164089	3L_2164089_SNP [dm3] 3L_2164089_SNP [dm6]	A	C	6.826e^-4	0.971	UPSTREAM CG15822 INTERGENIC
3L	5862919	3L_5862919_SNP [dm3] 3L_5869819_SNP [dm6]	G	A	6.828e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11149553	3L_11149553_SNP [dm3] 3L_11156453_SNP [dm6]	G	C	6.830e^-4	0.971	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2169092	3L_2169092_SNP [dm3] 3L_2169092_SNP [dm6]	G	C	6.838e^-4	0.971	UTR_5_PRIME CG15879 DOWNSTREAM CG5704
3L	2169211	3L_2169211_SNP [dm3] 3L_2169211_SNP [dm6]	G	T	6.838e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3L	2172874	3L_2172874_SNP [dm3] 3L_2172874_SNP [dm6]	G	A	6.838e^-4	0.971	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC
3R	25542803	3R_25542803_SNP [dm3] 3R_29717081_SNP [dm6]	G	T	6.838e^-4	0.971	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25543034	3R_25543034_SNP [dm3] 3R_29717312_SNP [dm6]	A	G	6.838e^-4	0.971	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	17646983	X_17646983_SNP [dm3] X_17752950_SNP [dm6]	G	C	6.838e^-4	0.971	DOWNSTREAM CG42684 INTERGENIC
3L	2882246	3L_2882246_SNP [dm3] 3L_2882246_SNP [dm6]	C	A	6.840e^-4	0.971	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	2882249	3L_2882249_SNP [dm3] 3L_2882249_SNP [dm6]	T	A	6.840e^-4	0.971	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	15247881	2R_15247881_SNP [dm3] 2R_19360376_SNP [dm6]	T	C	6.844e^-4	0.971	SYNONYMOUS_CODING CG11961
2R	6129784	2R_6129784_SNP [dm3] 2R_10242279_SNP [dm6]	A	T	6.854e^-4	0.971	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16196086	2L_16196086_SNP [dm3] 2L_16196086_SNP [dm6]	G	T	6.856e^-4	0.971	UPSTREAM CR44734 EXON CR44735	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19637496	2L_19637496_SNP [dm3] 2L_19637496_SNP [dm6]	A	T	6.859e^-4	0.971	INTRON Lar
2R	17618532	2R_17618532_INS [dm3] 2R_21731027_INS [dm6]	T	TT	6.869e^-4	0.971	INTERGENIC
3L	16207193	3L_16207193_SNP [dm3] 3L_16214093_SNP [dm6]	T	C	6.873e^-4	0.971	NON_SYNONYMOUS_CODING CG13073 EXON CR43891	TF binding site mE1_TFBS_HSA
3L	2172349	3L_2172349_SNP [dm3] 3L_2172349_SNP [dm6]	A	G	6.877e^-4	0.971	DOWNSTREAM CG15820 EXON CR15821
3L	2173688	3L_2173688_SNP [dm3] 3L_2173688_SNP [dm6]	G	T	6.877e^-4	0.971	SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3L	16375867	3L_16375867_SNP [dm3] 3L_16382767_SNP [dm6]	G	C	6.878e^-4	0.971	INTRON CG4729
3L	16375875	3L_16375875_SNP [dm3] 3L_16382775_SNP [dm6]	A	T	6.878e^-4	0.971	INTRON CG4729
2L	9973180	2L_9973180_INS [dm3] 2L_9973180_INS [dm6]	T	TCGGGGCACTA...	6.882e^-4	0.971	INTERGENIC
2L	15813979	2L_15813979_SNP [dm3] 2L_15813979_SNP [dm6]	A	C	6.889e^-4	0.971	INTERGENIC
2R	10981304	2R_10981304_SNP [dm3] 2R_15093799_SNP [dm6]	A	T	6.896e^-4	0.971	INTERGENIC
3R	17769542	3R_17769542_SNP [dm3] 3R_21943820_SNP [dm6]	G	A	6.900e^-4	0.971	INTERGENIC
2R	1379492	2R_1379492_SNP [dm3] 2R_5491987_SNP [dm6]	G	A	6.921e^-4	0.971	INTRON CG30440
3L	9809343	3L_9809343_SNP [dm3] 3L_9816243_SNP [dm6]	G	A	6.938e^-4	0.971	UTR_5_PRIME CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14786631	3R_14786631_SNP [dm3] 3R_18960909_SNP [dm6]	C	T	6.941e^-4	0.971	INTRON CG42613 & 1 other
3L	15883606	3L_15883606_DEL [dm3] 3L_15890506_DEL [dm6]	TT	T	6.944e^-4	0.971	INTRON pHCl
3L	2458632	3L_2458632_SNP [dm3] 3L_2458632_SNP [dm6]	A	C	6.952e^-4	0.971	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15730652	3L_15730652_DEL [dm3] 3L_15737552_DEL [dm6]	GT	G	6.955e^-4	0.971	INTERGENIC
2R	13610777	2R_13610777_SNP [dm3] 2R_17723272_SNP [dm6]	C	T	6.956e^-4	0.971	UTR_3_PRIME CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	8989955	3L_8989955_SNP [dm3] 3L_8996855_SNP [dm6]	C	A	6.965e^-4	0.971	SPLICE_SITE_REGION smg UTR_5_PRIME smg UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22327300	3R_22327300_SNP [dm3] 3R_26501578_SNP [dm6]	C	A	6.965e^-4	0.971	INTRON plum
2R	16060614	2R_16060614_SNP [dm3] 2R_20173109_SNP [dm6]	G	T	6.966e^-4	0.971	INTERGENIC
3L	2169073	3L_2169073_SNP [dm3] 3L_2169073_SNP [dm6]	C	A	6.976e^-4	0.971	UTR_5_PRIME CG15879 DOWNSTREAM CG5704
3L	2424388	3L_2424388_SNP [dm3] 3L_2424388_SNP [dm6]	T	C	6.987e^-4	0.971	INTRON CG45186
2L	10751601	2L_10751601_SNP [dm3] 2L_10751601_SNP [dm6]	T	A	7.007e^-4	0.971	INTRON CG17124	TF binding site mE1_TFBS_cad
X	10132868	X_10132868_SNP [dm3] X_10238835_SNP [dm6]	C	T	7.008e^-4	0.971	UTR_3_PRIME Hk	TF binding site mE1_TFBS_chinmo
2R	16210895	2R_16210895_SNP [dm3] 2R_20323390_SNP [dm6]	C	T	7.010e^-4	0.971	SYNONYMOUS_CODING CG8920	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5232159	3L_5232159_SNP [dm3] 3L_5239059_SNP [dm6]	A	C	7.024e^-4	0.971	INTRON shep
2L	7120101	2L_7120101_SNP [dm3] 2L_7120101_SNP [dm6]	G	A	7.042e^-4	0.971	INTRON Pvf3
2L	8182276	2L_8182276_SNP [dm3] 2L_8182276_SNP [dm6]	G	T	7.048e^-4	0.971	DOWNSTREAM Piezo INTRON Piezo
3L	3534669	3L_3534669_DEL [dm3] 3L_3534669_DEL [dm6]	TCGT	T	7.051e^-4	0.971	INTRON Eip63E
3L	821968	3L_821968_SNP [dm3] 3L_821968_SNP [dm6]	C	A	7.053e^-4	0.971	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4274565	X_4274565_SNP [dm3] X_4380532_SNP [dm6]	A	C	7.059e^-4	0.971	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7992195	2L_7992195_SNP [dm3] 2L_7992195_SNP [dm6]	C	A	7.094e^-4	0.971	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7992208	2L_7992208_SNP [dm3] 2L_7992208_SNP [dm6]	G	A	7.094e^-4	0.971	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6082595	2R_6082595_SNP [dm3] 2R_10195090_SNP [dm6]	T	C	7.105e^-4	0.971	INTERGENIC
2R	6082598	2R_6082598_SNP [dm3] 2R_10195093_SNP [dm6]	G	T	7.105e^-4	0.971	INTERGENIC
2R	6082599	2R_6082599_SNP [dm3] 2R_10195094_SNP [dm6]	A	T	7.105e^-4	0.971	INTERGENIC
3L	2266261	3L_2266261_SNP [dm3] 3L_2266261_SNP [dm6]	G	A	7.110e^-4	0.971	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9498965	3R_9498965_SNP [dm3] 3R_13673243_SNP [dm6]	A	G	7.119e^-4	0.971	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	11123674	X_11123674_SNP [dm3] X_11229641_SNP [dm6]	A	T	7.137e^-4	0.971	INTRON CG44422
3L	13293954	3L_13293954_SNP [dm3] 3L_13300854_SNP [dm6]	A	G	7.143e^-4	0.971	UPSTREAM CG43147 & 1 other INTERGENIC
3R	14786638	3R_14786638_SNP [dm3] 3R_18960916_SNP [dm6]	G	A	7.143e^-4	0.971	INTRON CG42613 & 1 other
2R	10795129	2R_10795129_SNP [dm3] 2R_14907624_SNP [dm6]	G	A	7.155e^-4	0.971	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15564092	2R_15564092_SNP [dm3] 2R_19676587_SNP [dm6]	T	A	7.167e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4657214	2R_4657214_SNP [dm3] 2R_8769709_SNP [dm6]	A	G	7.169e^-4	0.971	UPSTREAM CR44278 INTERGENIC
3R	16158379	3R_16158379_DEL [dm3] 3R_20332657_DEL [dm6]	TT	T	7.173e^-4	0.971	INTERGENIC
3R	8943823	3R_8943823_SNP [dm3] 3R_13118101_SNP [dm6]	T	C	7.185e^-4	0.971	INTRON timeout
3R	8967758	3R_8967758_SNP [dm3] 3R_13142036_SNP [dm6]	T	G	7.185e^-4	0.971	INTRON timeout & 2 others
3R	9364348	3R_9364348_SNP [dm3] 3R_13538626_SNP [dm6]	A	G	7.185e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18087046	X_18087046_SNP [dm3] X_18193013_SNP [dm6]	G	C	7.210e^-4	0.971	INTRON Frq2
3L	8904207	3L_8904207_SNP [dm3] 3L_8911107_SNP [dm6]	G	T	7.225e^-4	0.971	NON_SYNONYMOUS_CODING mfr UTR_5_PRIME mfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2450114	2R_2450114_SNP [dm3] 2R_6562609_SNP [dm6]	G	T	7.230e^-4	0.971	INTRON jing	TF binding site mE1_TFBS_cad
2R	17457469	2R_17457469_SNP [dm3] 2R_21569964_SNP [dm6]	A	G	7.279e^-4	0.971	INTRON CG10440
2R	18889453	2R_18889453_SNP [dm3] 2R_23001930_SNP [dm6]	T	A	7.300e^-4	0.971	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	16092795	X_16092795_SNP [dm3] X_16198762_SNP [dm6]	C	G	7.300e^-4	0.971	INTERGENIC
X	8876049	X_8876049_SNP [dm3] X_8982016_SNP [dm6]	A	T	7.310e^-4	0.971	INTRON rdgA & 1 other
2R	14421626	2R_14421626_SNP [dm3] 2R_18534121_SNP [dm6]	C	T	7.310e^-4	0.971	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17306468	2R_17306468_SNP [dm3] 2R_21418963_SNP [dm6]	T	C	7.317e^-4	0.971	INTRON Sdc
2R	6385911	2R_6385911_SNP [dm3] 2R_10498406_SNP [dm6]	A	T	7.317e^-4	0.971	INTRON lola
X	10785477	X_10785477_INS [dm3] X_10891444_INS [dm6]	T	TT	7.317e^-4	0.971	UPSTREAM Ork1 & 1 other EXON CR45616
X	15556851	X_15556851_SNP [dm3] X_15662818_SNP [dm6]	C	A	7.317e^-4	0.971	SYNONYMOUS_CODING CG8119 EXON CR43299	TF binding site mE1_TFBS_sens
2R	18503534	2R_18503534_SNP [dm3] 2R_22616029_SNP [dm6]	T	C	7.320e^-4	0.971	INTRON CG33143	TF binding site mE1_TFBS_sbb
3R	16788353	3R_16788353_MNP [dm3] 3R_20962631_MNP [dm6]	ATA	TAT	7.328e^-4	0.971	INTRON Atpalpha
X	13694956	X_13694956_DEL [dm3] X_13800923_DEL [dm6]	ACTTTAAGAACAAC...	A	7.329e^-4	0.971	INTRON inaE
3L	11213645	3L_11213645_SNP [dm3] 3L_11220545_SNP [dm6]	A	T	7.331e^-4	0.971	INTRON CG42671	TF binding site mE1_TFBS_cad
3L	12848973	3L_12848973_SNP [dm3] 3L_12855873_SNP [dm6]	C	G	7.331e^-4	0.971	NON_SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14169719	2R_14169719_SNP [dm3] 2R_18282214_SNP [dm6]	A	G	7.351e^-4	0.971	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7673138	X_7673138_SNP [dm3] X_7779105_SNP [dm6]	T	A	7.352e^-4	0.971	INTRON CG32718
2R	19155637	2R_19155637_SNP [dm3] 2R_23268114_SNP [dm6]	A	C	7.356e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25541122	3R_25541122_SNP [dm3] 3R_29715400_SNP [dm6]	C	T	7.384e^-4	0.971	UPSTREAM Dup99B DOWNSTREAM Obp99d & 1 other INTERGENIC
3R	21284183	3R_21284183_SNP [dm3] 3R_25458461_SNP [dm6]	T	C	7.400e^-4	0.971	INTRON Fur1
3L	14202453	3L_14202453_SNP [dm3] 3L_14209353_SNP [dm6]	C	T	7.403e^-4	0.971	INTRON nuf
3L	2345081	3L_2345081_SNP [dm3] 3L_2345081_SNP [dm6]	T	A	7.412e^-4	0.971	UTR_3_PRIME MsR1
3L	2169215	3L_2169215_SNP [dm3] 3L_2169215_SNP [dm6]	G	A	7.414e^-4	0.971	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
2L	2701880	2L_2701880_SNP [dm3] 2L_2701880_SNP [dm6]	C	A	7.424e^-4	0.971	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2701910	2L_2701910_SNP [dm3] 2L_2701910_SNP [dm6]	T	C	7.424e^-4	0.971	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17344718	2R_17344718_DEL [dm3] 2R_21457213_DEL [dm6]	ACACA	A	7.426e^-4	0.971	INTRON Sdc

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.034e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.089809
In_3R_P	0.080408
In_3R_K	0.000404

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	2.832	0.0924

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1291 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8412490	2R_8412490_DEL [dm3] 2R_12524985_DEL [dm6]	GG	G	1.531e^-6	0.917	INTERGENIC
2L	20661287	2L_20661287_SNP [dm3] 2L_20661287_SNP [dm6]	C	T	5.171e^-6	0.917	INTRON CG31678
3L	7185666	3L_7185666_SNP [dm3] 3L_7192566_SNP [dm6]	T	C	6.789e^-6	0.917	INTERGENIC
3L	16294190	3L_16294190_SNP [dm3] 3L_16301090_SNP [dm6]	T	C	1.004e^-5	0.917	UPSTREAM CG4982 INTERGENIC
2R	6023147	2R_6023147_SNP [dm3] 2R_10135642_SNP [dm6]	G	A	1.193e^-5	0.917	SYNONYMOUS_CODING gem
3L	11986163	3L_11986163_SNP [dm3] 3L_11993063_SNP [dm6]	G	A	1.383e^-5	0.917	START_GAINED viaf UTR_5_PRIME viaf DOWNSTREAM Grip163
2R	17150108	2R_17150108_INS [dm3] 2R_21262603_INS [dm6]	C	CGGGCC	1.392e^-5	0.917	INTRON Rgk3
3R	25895134	3R_25895134_SNP [dm3] 3R_30069412_SNP [dm6]	G	A	1.526e^-5	0.917	INTRON sima
3L	6986423	3L_6986423_SNP [dm3] 3L_6993323_SNP [dm6]	A	C	3.443e^-5	0.917	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad
3L	14074793	3L_14074793_SNP [dm3] 3L_14081693_SNP [dm6]	T	C	3.573e^-5	0.917	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3L	5316350	3L_5316350_SNP [dm3] 3L_5323250_SNP [dm6]	A	T	4.055e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13167385	2R_13167385_SNP [dm3] 2R_17279880_SNP [dm6]	A	G	4.201e^-5	0.917	INTRON mbl
3L	20738860	3L_20738860_SNP [dm3] 3L_20745760_SNP [dm6]	G	A	4.698e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17273367	2R_17273367_SNP [dm3] 2R_21385862_SNP [dm6]	A	T	4.744e^-5	0.917	UPSTREAM Acox57D-p INTRON EfSec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17273435	2R_17273435_SNP [dm3] 2R_21385930_SNP [dm6]	G	A	4.744e^-5	0.917	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10237720	2R_10237720_SNP [dm3] 2R_14350215_SNP [dm6]	G	A	4.801e^-5	0.917	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26162341	3R_26162341_SNP [dm3] 3R_30336619_SNP [dm6]	T	C	4.958e^-5	0.917	INTRON hdc
3L	7188620	3L_7188620_SNP [dm3] 3L_7195520_SNP [dm6]	G	A	5.005e^-5	0.917	INTERGENIC
X	18112255	X_18112255_SNP [dm3] X_18218222_SNP [dm6]	G	A	5.644e^-5	0.917	INTRON CG33639
3L	3788204	3L_3788204_SNP [dm3] 3L_3788204_SNP [dm6]	C	G	5.818e^-5	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13974149	X_13974149_SNP [dm3] X_14080116_SNP [dm6]	T	A	6.077e^-5	0.917	INTERGENIC
3L	15047164	3L_15047164_SNP [dm3] 3L_15054064_SNP [dm6]	G	C	6.310e^-5	0.917	NON_SYNONYMOUS_CODING CG18649 UPSTREAM CG43680 & 1 other INTRON Sytbeta
2R	9437047	2R_9437047_SNP [dm3] 2R_13549542_SNP [dm6]	G	A	6.392e^-5	0.917	SPLICE_SITE_REGION CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
3R	26162365	3R_26162365_SNP [dm3] 3R_30336643_SNP [dm6]	T	A	6.431e^-5	0.917	INTRON hdc
2R	15102383	2R_15102383_SNP [dm3] 2R_19214878_SNP [dm6]	G	A	6.500e^-5	0.917	INTRON hppy
3L	12242211	3L_12242211_SNP [dm3] 3L_12249111_SNP [dm6]	A	T	6.565e^-5	0.917	INTRON app	TF binding site mE1_TFBS_cad
2R	14598055	2R_14598055_SNP [dm3] 2R_18710550_SNP [dm6]	A	C	6.749e^-5	0.917	SYNONYMOUS_CODING CG15087 UPSTREAM pncr016:2R	TF binding site BDTNP1_TFBS_dl
2L	18629462	2L_18629462_SNP [dm3] 2L_18629462_SNP [dm6]	T	C	7.009e^-5	0.917	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12490868	2R_12490868_SNP [dm3] 2R_16603363_SNP [dm6]	T	C	7.356e^-5	0.917	INTRON CG8303
3L	5916686	3L_5916686_SNP [dm3] 3L_5923586_SNP [dm6]	T	C	8.232e^-5	0.917	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
X	11746660	X_11746660_DEL [dm3] X_11852627_DEL [dm6]	TT	T	8.378e^-5	0.917	UPSTREAM p24-1 DOWNSTREAM CG10347 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9275611	2R_9275611_SNP [dm3] 2R_13388106_SNP [dm6]	T	C	8.525e^-5	0.917	INTERGENIC
3R	25915643	3R_25915643_SNP [dm3] 3R_30089921_SNP [dm6]	C	A	8.615e^-5	0.917	INTRON sima	TF binding site mE1_TFBS_Trl
2R	8349947	2R_8349947_SNP [dm3] 2R_12462442_SNP [dm6]	A	C	8.808e^-5	0.917	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	9437074	2R_9437074_SNP [dm3] 2R_13549569_SNP [dm6]	T	C	8.967e^-5	0.917	INTRON CG33156	TF binding site mE1_TFBS_inv
2L	9028068	2L_9028068_SNP [dm3] 2L_9028068_SNP [dm6]	C	T	9.035e^-5	0.917	INTRON CG9582 & 1 other
2R	14857585	2R_14857585_SNP [dm3] 2R_18970080_SNP [dm6]	G	C	9.094e^-5	0.917	INTRON prod	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7188344	3L_7188344_SNP [dm3] 3L_7195244_SNP [dm6]	G	A	9.246e^-5	0.917	INTERGENIC
3L	7188425	3L_7188425_SNP [dm3] 3L_7195325_SNP [dm6]	A	C	9.246e^-5	0.917	INTERGENIC
X	1088689	X_1088689_SNP [dm3] X_1194656_SNP [dm6]	C	T	9.415e^-5	0.917	INTRON CG11380	TF binding site mE1_TFBS_chinmo
X	1089177	X_1089177_SNP [dm3] X_1195144_SNP [dm6]	G	A	9.415e^-5	0.917	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20738863	3L_20738863_INS [dm3] 3L_20745763_INS [dm6]	A	AA	9.428e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14469904	2R_14469904_SNP [dm3] 2R_18582399_SNP [dm6]	C	G	9.451e^-5	0.917	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	8385505	3L_8385505_SNP [dm3] 3L_8392405_SNP [dm6]	T	A	9.481e^-5	0.917	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9558534	3L_9558534_SNP [dm3] 3L_9565434_SNP [dm6]	A	C	9.605e^-5	0.917	INTRON CG42673
2L	8907757	2L_8907757_SNP [dm3] 2L_8907757_SNP [dm6]	C	T	9.708e^-5	0.917	INTRON CG34398
2L	8907784	2L_8907784_SNP [dm3] 2L_8907784_SNP [dm6]	A	G	9.708e^-5	0.917	INTRON CG34398
3L	19165711	3L_19165711_SNP [dm3] 3L_19172611_SNP [dm6]	T	C	9.862e^-5	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	26162413	3R_26162413_SNP [dm3] 3R_30336691_SNP [dm6]	G	A	1.010e^-4	0.917	INTRON hdc
3L	19165621	3L_19165621_SNP [dm3] 3L_19172521_SNP [dm6]	A	G	1.019e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	19165639	3L_19165639_SNP [dm3] 3L_19172539_SNP [dm6]	T	C	1.019e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	19165653	3L_19165653_SNP [dm3] 3L_19172553_SNP [dm6]	T	A	1.019e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	19165659	3L_19165659_SNP [dm3] 3L_19172559_SNP [dm6]	G	T	1.019e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	19165672	3L_19165672_SNP [dm3] 3L_19172572_SNP [dm6]	T	C	1.019e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6568814	3L_6568814_SNP [dm3] 3L_6575714_SNP [dm6]	A	T	1.025e^-4	0.917	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
X	11073560	X_11073560_SNP [dm3] X_11179527_SNP [dm6]	C	T	1.039e^-4	0.917	INTERGENIC
3L	19165622	3L_19165622_SNP [dm3] 3L_19172522_SNP [dm6]	A	T	1.111e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	411468	3L_411468_SNP [dm3] 3L_411468_SNP [dm6]	T	G	1.112e^-4	0.917	INTERGENIC
3R	10924592	3R_10924592_SNP [dm3] 3R_15098870_SNP [dm6]	C	T	1.117e^-4	0.917	SYNONYMOUS_CODING CG42788	TF binding site BDTNP1_TFBS_sna
3R	6820443	3R_6820443_SNP [dm3] 3R_10994721_SNP [dm6]	G	A	1.130e^-4	0.917	INTRON CG34114
3L	937234	3L_937234_SNP [dm3] 3L_937234_SNP [dm6]	T	C	1.132e^-4	0.917	INTRON Glut1
3L	11630130	3L_11630130_SNP [dm3] 3L_11637030_SNP [dm6]	G	C	1.152e^-4	0.917	INTRON CG32091
3L	12010553	3L_12010553_SNP [dm3] 3L_12017453_SNP [dm6]	C	T	1.217e^-4	0.917	INTRON rols
2R	5559491	2R_5559491_SNP [dm3] 2R_9671986_SNP [dm6]	C	G	1.221e^-4	0.917	INTRON Mmp2
3R	21053501	3R_21053501_SNP [dm3] 3R_25227779_SNP [dm6]	C	T	1.226e^-4	0.917	INTRON Cad96Cb
X	18112121	X_18112121_DEL [dm3] X_18218088_DEL [dm6]	GGTTGATGCTGAGTTTATCG...	TA	1.232e^-4	0.917	INTRON CG33639
3L	14154559	3L_14154559_SNP [dm3] 3L_14161459_SNP [dm6]	C	T	1.247e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
3L	9335230	3L_9335230_SNP [dm3] 3L_9342130_SNP [dm6]	G	T	1.274e^-4	0.917	INTRON PGRP-LC	TF binding site mE1_TFBS_cad
3L	15187557	3L_15187557_SNP [dm3] 3L_15194457_SNP [dm6]	C	T	1.316e^-4	0.917	INTERGENIC
2R	13166580	2R_13166580_SNP [dm3] 2R_17279075_SNP [dm6]	G	A	1.352e^-4	0.917	INTRON mbl
X	18112197	X_18112197_SNP [dm3] X_18218164_SNP [dm6]	G	T	1.363e^-4	0.917	INTRON CG33639
3R	21731074	3R_21731074_SNP [dm3] 3R_25905352_SNP [dm6]	T	G	1.371e^-4	0.917	DOWNSTREAM CR43259 INTRON CR43259
X	6517273	X_6517273_SNP [dm3] X_6623240_SNP [dm6]	C	G	1.387e^-4	0.917	INTRON pigs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15990118	2L_15990118_SNP [dm3] 2L_15990118_SNP [dm6]	A	T	1.403e^-4	0.917	DOWNSTREAM CR43412 INTERGENIC
2R	5613002	2R_5613002_SNP [dm3] 2R_9725497_SNP [dm6]	G	A	1.410e^-4	0.917	INTRON sqa
3L	19193307	3L_19193307_SNP [dm3] 3L_19200207_SNP [dm6]	A	T	1.412e^-4	0.917	INTRON fz2
2R	18710365	2R_18710365_SNP [dm3] 2R_22822842_SNP [dm6]	T	A	1.434e^-4	0.917	DOWNSTREAM CG30271 INTRON CG42284
3L	12081623	3L_12081623_SNP [dm3] 3L_12088523_SNP [dm6]	G	T	1.442e^-4	0.917	UPSTREAM CG17154 INTERGENIC
3L	12081688	3L_12081688_SNP [dm3] 3L_12088588_SNP [dm6]	G	C	1.442e^-4	0.917	UPSTREAM CG17154 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17234094	3R_17234094_SNP [dm3] 3R_21408372_SNP [dm6]	G	A	1.455e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17234115	3R_17234115_SNP [dm3] 3R_21408393_SNP [dm6]	C	A	1.455e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4152864	2R_4152864_SNP [dm3] 2R_8265359_SNP [dm6]	T	G	1.463e^-4	0.917	UPSTREAM CG30376 DOWNSTREAM CG30375 INTERGENIC
3L	19165634	3L_19165634_SNP [dm3] 3L_19172534_SNP [dm6]	G	C	1.482e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26177822	3R_26177822_SNP [dm3] 3R_30352100_SNP [dm6]	A	G	1.483e^-4	0.917	INTRON hdc
3R	18793946	3R_18793946_SNP [dm3] 3R_22968224_SNP [dm6]	A	T	1.523e^-4	0.917	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8349940	2R_8349940_SNP [dm3] 2R_12462435_SNP [dm6]	A	G	1.524e^-4	0.917	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	8349945	2R_8349945_SNP [dm3] 2R_12462440_SNP [dm6]	A	C	1.524e^-4	0.917	INTRON Lac	TF binding site BDTNP1_TFBS_dl
X	6247777	X_6247777_SNP [dm3] X_6353744_SNP [dm6]	A	G	1.531e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19901003	2R_19901003_SNP [dm3] 2R_24013480_SNP [dm6]	T	C	1.533e^-4	0.917	INTRON Unc-89
X	9745646	X_9745646_INS [dm3] X_9851613_INS [dm6]	A	AA	1.535e^-4	0.917	UTR_3_PRIME CG32698
3R	6820454	3R_6820454_SNP [dm3] 3R_10994732_SNP [dm6]	C	G	1.536e^-4	0.917	INTRON CG34114
2L	20661436	2L_20661436_SNP [dm3] 2L_20661436_SNP [dm6]	C	T	1.543e^-4	0.917	INTRON CG31678
X	3033882	X_3033882_SNP [dm3] X_3139849_SNP [dm6]	C	T	1.566e^-4	0.917	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13314275	3R_13314275_SNP [dm3] 3R_17488553_SNP [dm6]	C	G	1.569e^-4	0.917	INTRON Dscam3
3R	13314300	3R_13314300_SNP [dm3] 3R_17488578_SNP [dm6]	T	A	1.569e^-4	0.917	INTRON Dscam3
3R	13314301	3R_13314301_SNP [dm3] 3R_17488579_SNP [dm6]	C	A	1.569e^-4	0.917	INTRON Dscam3
3R	13314323	3R_13314323_SNP [dm3] 3R_17488601_SNP [dm6]	C	A	1.569e^-4	0.917	INTRON Dscam3
2L	6505209	2L_6505209_SNP [dm3] 2L_6505209_SNP [dm6]	A	T	1.576e^-4	0.917	INTRON CG31637
3R	19500427	3R_19500427_SNP [dm3] 3R_23674705_SNP [dm6]	G	A	1.578e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_inv
3L	21553283	3L_21553283_SNP [dm3] 3L_21560183_SNP [dm6]	C	A	1.586e^-4	0.917	SPLICE_SITE_REGION CapaR INTRON CapaR
2R	14513408	2R_14513408_SNP [dm3] 2R_18625903_SNP [dm6]	A	G	1.590e^-4	0.917	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
3L	19165691	3L_19165691_SNP [dm3] 3L_19172591_SNP [dm6]	C	A	1.604e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	16750660	X_16750660_DEL [dm3] X_16856627_DEL [dm6]	CACATTTAGTTAGCATAATT...	C	1.613e^-4	0.917	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8377932	3L_8377932_SNP [dm3] 3L_8384832_SNP [dm6]	A	T	1.616e^-4	0.917	INTRON ImpE1	TF binding site mE1_TFBS_chinmo
2R	10795094	2R_10795094_INS [dm3] 2R_14907589_INS [dm6]	T	TGTGTCTTTT	1.622e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795101	2R_10795101_SNP [dm3] 2R_14907596_SNP [dm6]	A	T	1.622e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795115	2R_10795115_INS [dm3] 2R_14907610_INS [dm6]	T	TTTATTTCATTTAGTGT...	1.622e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795123	2R_10795123_SNP [dm3] 2R_14907618_SNP [dm6]	A	T	1.622e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9789281	2R_9789281_SNP [dm3] 2R_13901776_SNP [dm6]	G	A	1.624e^-4	0.917	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	19601116	2L_19601116_SNP [dm3] 2L_19601116_SNP [dm6]	T	C	1.667e^-4	0.917	INTRON CR44978 & 1 other
2L	18622680	2L_18622680_SNP [dm3] 2L_18622680_SNP [dm6]	C	T	1.668e^-4	0.917	INTRON MESR3
2L	18622685	2L_18622685_SNP [dm3] 2L_18622685_SNP [dm6]	T	C	1.668e^-4	0.917	INTRON MESR3
3L	12205334	3L_12205334_SNP [dm3] 3L_12212234_SNP [dm6]	G	C	1.695e^-4	0.917	SYNONYMOUS_CODING app DOWNSTREAM app INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4335331	2L_4335331_SNP [dm3] 2L_4335331_SNP [dm6]	C	G	1.697e^-4	0.917	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1583830	3L_1583830_SNP [dm3] 3L_1583830_SNP [dm6]	T	C	1.700e^-4	0.917	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1583844	3L_1583844_SNP [dm3] 3L_1583844_SNP [dm6]	C	T	1.700e^-4	0.917	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6505298	2L_6505298_SNP [dm3] 2L_6505298_SNP [dm6]	A	T	1.713e^-4	0.917	INTRON CG31637
3R	13314339	3R_13314339_SNP [dm3] 3R_17488617_SNP [dm6]	G	T	1.733e^-4	0.917	INTRON Dscam3
3L	14958482	3L_14958482_SNP [dm3] 3L_14965382_SNP [dm6]	A	C	1.746e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13397908	3L_13397908_SNP [dm3] 3L_13404808_SNP [dm6]	T	G	1.752e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14086932	2R_14086932_SNP [dm3] 2R_18199427_SNP [dm6]	C	G	1.763e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17172143	2R_17172143_SNP [dm3] 2R_21284638_SNP [dm6]	C	T	1.778e^-4	0.917	DOWNSTREAM CG10505 INTRON MFS16
X	11071781	X_11071781_SNP [dm3] X_11177748_SNP [dm6]	T	A	1.782e^-4	0.917	INTERGENIC
3L	15791963	3L_15791963_SNP [dm3] 3L_15798863_SNP [dm6]	G	A	1.785e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6505156	2L_6505156_SNP [dm3] 2L_6505156_SNP [dm6]	C	G	1.796e^-4	0.917	INTRON CG31637
2R	9322965	2R_9322965_SNP [dm3] 2R_13435460_SNP [dm6]	G	A	1.822e^-4	0.917	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3L	13228133	3L_13228133_SNP [dm3] 3L_13235033_SNP [dm6]	A	G	1.827e^-4	0.917	INTRON caps
3L	14121705	3L_14121705_SNP [dm3] 3L_14128605_SNP [dm6]	T	A	1.827e^-4	0.917	INTRON Sox21b
3L	7273321	3L_7273321_SNP [dm3] 3L_7280221_SNP [dm6]	A	G	1.827e^-4	0.917	INTRON unc-13-4A
2L	8748283	2L_8748283_SNP [dm3] 2L_8748283_SNP [dm6]	C	A	1.835e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	7946729	2R_7946729_SNP [dm3] 2R_12059224_SNP [dm6]	G	A	1.839e^-4	0.917	INTRON Drep-3
3L	5916691	3L_5916691_SNP [dm3] 3L_5923591_SNP [dm6]	C	T	1.847e^-4	0.917	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14676754	3L_14676754_DEL [dm3] 3L_14683654_DEL [dm6]	AA	A	1.848e^-4	0.917	INTRON ome
3R	24579135	3R_24579135_SNP [dm3] 3R_28753413_SNP [dm6]	C	T	1.861e^-4	0.917	INTERGENIC
3R	17148837	3R_17148837_DEL [dm3] 3R_21323115_DEL [dm6]	TAT	T	1.878e^-4	0.917	INTRON CG16791
3R	17234181	3R_17234181_SNP [dm3] 3R_21408459_SNP [dm6]	A	T	1.889e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15085129	3L_15085129_SNP [dm3] 3L_15092029_SNP [dm6]	T	C	1.897e^-4	0.917	SYNONYMOUS_CODING CG6945 INTRON cp309	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5589488	2R_5589488_SNP [dm3] 2R_9701983_SNP [dm6]	A	T	1.900e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11673243	X_11673243_SNP [dm3] X_11779210_SNP [dm6]	C	T	1.900e^-4	0.917	UPSTREAM dy INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23666493	3R_23666493_SNP [dm3] 3R_27840771_SNP [dm6]	T	C	1.936e^-4	0.917	INTRON CG34353
X	3784917	X_3784917_SNP [dm3] X_3890884_SNP [dm6]	G	A	1.945e^-4	0.917	DOWNSTREAM CG15239 & 1 other INTERGENIC
2R	19936507	2R_19936507_SNP [dm3] 2R_24048984_SNP [dm6]	A	G	1.948e^-4	0.917	UPSTREAM sei & 1 other INTRON sei	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22032967	3R_22032967_SNP [dm3] 3R_26207245_SNP [dm6]	T	C	1.953e^-4	0.917	INTRON CR44320
X	16750651	X_16750651_SNP [dm3] X_16856618_SNP [dm6]	C	T	1.953e^-4	0.917	INTRON CG13003	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5703586	X_5703586_SNP [dm3] X_5809553_SNP [dm6]	T	C	1.953e^-4	0.917	SYNONYMOUS_CODING Prosbeta2R1 UPSTREAM CR45529	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5703604	X_5703604_SNP [dm3] X_5809571_SNP [dm6]	A	G	1.953e^-4	0.917	SYNONYMOUS_CODING Prosbeta2R1 UPSTREAM CR45529	TF binding site mE1_TFBS_chinmo
3L	7177613	3L_7177613_SNP [dm3] 3L_7184513_SNP [dm6]	G	C	1.954e^-4	0.917	INTRON Dscam2
X	11748967	X_11748967_SNP [dm3] X_11854934_SNP [dm6]	T	G	1.976e^-4	0.917	UPSTREAM ATP7 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2876626	3L_2876626_SNP [dm3] 3L_2876626_SNP [dm6]	C	A	1.992e^-4	0.917	INTRON CG43444
3L	4341201	3L_4341201_SNP [dm3] 3L_4341201_SNP [dm6]	C	G	2.026e^-4	0.917	INTRON Cip4
3L	4341206	3L_4341206_SNP [dm3] 3L_4341206_SNP [dm6]	G	C	2.026e^-4	0.917	INTRON Cip4
3R	27148910	3R_27148910_SNP [dm3] 3R_31323188_SNP [dm6]	G	A	2.036e^-4	0.917	INTRON CG34347
3L	899002	3L_899002_SNP [dm3] 3L_899002_SNP [dm6]	G	T	2.036e^-4	0.917	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	899004	3L_899004_SNP [dm3] 3L_899004_SNP [dm6]	G	A	2.036e^-4	0.917	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	18418022	2L_18418022_INS [dm3] 2L_18418022_INS [dm6]	A	AGGGCGTTAT	2.040e^-4	0.917	INTERGENIC
2R	9824290	2R_9824290_SNP [dm3] 2R_13936785_SNP [dm6]	C	T	2.076e^-4	0.917	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20658896	2L_20658896_SNP [dm3] 2L_20658896_SNP [dm6]	C	T	2.090e^-4	0.917	SYNONYMOUS_CODING CG2614 DOWNSTREAM CG31678
3L	2702581	3L_2702581_SNP [dm3] 3L_2702581_SNP [dm6]	C	T	2.101e^-4	0.917	INTRON Fife
2L	16290107	2L_16290107_SNP [dm3] 2L_16290107_SNP [dm6]	G	A	2.103e^-4	0.917	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
3R	27280055	3R_27280055_SNP [dm3] 3R_31454333_SNP [dm6]	C	A	2.106e^-4	0.917	INTRON Gprk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	18622681	2L_18622681_SNP [dm3] 2L_18622681_SNP [dm6]	A	C	2.110e^-4	0.917	INTRON MESR3
2L	18729399	2L_18729399_SNP [dm3] 2L_18729399_SNP [dm6]	A	G	2.123e^-4	0.917	INTRON CG10348
3R	9496589	3R_9496589_SNP [dm3] 3R_13670867_SNP [dm6]	C	A	2.138e^-4	0.917	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14121611	3L_14121611_SNP [dm3] 3L_14128511_SNP [dm6]	A	T	2.140e^-4	0.917	INTRON Sox21b
X	1076587	X_1076587_SNP [dm3] X_1182554_SNP [dm6]	A	T	2.140e^-4	0.917	SYNONYMOUS_CODING CG14627	TF binding site mE1_TFBS_chinmo
3R	21731122	3R_21731122_SNP [dm3] 3R_25905400_SNP [dm6]	G	C	2.147e^-4	0.917	DOWNSTREAM CR43259 INTRON CR43259
3R	21731053	3R_21731053_SNP [dm3] 3R_25905331_SNP [dm6]	G	C	2.172e^-4	0.917	DOWNSTREAM CR43259 INTRON CR43259
2L	18388556	2L_18388556_SNP [dm3] 2L_18388556_SNP [dm6]	C	T	2.172e^-4	0.917	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20552961	3L_20552961_SNP [dm3] 3L_20559861_SNP [dm6]	G	C	2.182e^-4	0.917	INTERGENIC
2R	5895992	2R_5895992_SNP [dm3] 2R_10008487_SNP [dm6]	A	G	2.185e^-4	0.917	INTRON Pka-R2
3R	12095904	3R_12095904_SNP [dm3] 3R_16270182_SNP [dm6]	C	T	2.187e^-4	0.917	NON_SYNONYMOUS_CODING Mat89Ba	TF binding site mE1_TFBS_sens
3L	9007471	3L_9007471_SNP [dm3] 3L_9014371_SNP [dm6]	T	G	2.191e^-4	0.917	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14958789	3L_14958789_SNP [dm3] 3L_14965689_SNP [dm6]	A	T	2.192e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8388972	2L_8388972_SNP [dm3] 2L_8388972_SNP [dm6]	C	T	2.213e^-4	0.917	NON_SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
2R	6599000	2R_6599000_SNP [dm3] 2R_10711495_SNP [dm6]	G	A	2.216e^-4	0.917	SYNONYMOUS_CODING stan
3L	5916670	3L_5916670_SNP [dm3] 3L_5923570_SNP [dm6]	C	T	2.226e^-4	0.917	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5916674	3L_5916674_SNP [dm3] 3L_5923574_SNP [dm6]	T	C	2.226e^-4	0.917	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5916675	3L_5916675_SNP [dm3] 3L_5923575_SNP [dm6]	A	G	2.226e^-4	0.917	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11319792	3L_11319792_SNP [dm3] 3L_11326692_SNP [dm6]	C	A	2.237e^-4	0.917	INTERGENIC
3L	5885655	3L_5885655_SNP [dm3] 3L_5892555_SNP [dm6]	A	G	2.240e^-4	0.917	INTERGENIC
3R	20892523	3R_20892523_SNP [dm3] 3R_25066801_SNP [dm6]	C	T	2.248e^-4	0.917	UTR_3_PRIME OstStt3 DOWNSTREAM PQBP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18687819	3L_18687819_SNP [dm3] 3L_18694719_SNP [dm6]	C	A	2.248e^-4	0.917	UPSTREAM CR43987 INTRON CG6893
2R	2767890	2R_2767890_SNP [dm3] 2R_6880385_SNP [dm6]	G	T	2.252e^-4	0.917	NON_SYNONYMOUS_CODING Spn42Db UPSTREAM Spn42Dc DOWNSTREAM CR44169	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23989460	3R_23989460_SNP [dm3] 3R_28163738_SNP [dm6]	C	A	2.257e^-4	0.917	INTRON CG34354
3L	5896796	3L_5896796_SNP [dm3] 3L_5903696_SNP [dm6]	G	A	2.262e^-4	0.917	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
3L	14760922	3L_14760922_SNP [dm3] 3L_14767822_SNP [dm6]	G	C	2.266e^-4	0.917	NON_SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
3L	5924685	3L_5924685_SNP [dm3] 3L_5931585_SNP [dm6]	A	G	2.273e^-4	0.917	INTRON Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	17065698	2R_17065698_SNP [dm3] 2R_21178193_SNP [dm6]	C	T	2.275e^-4	0.917	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16643566	3R_16643566_SNP [dm3] 3R_20817844_SNP [dm6]	T	C	2.277e^-4	0.917	INTRON CG17270
3L	11769860	3L_11769860_SNP [dm3] 3L_11776760_SNP [dm6]	A	G	2.278e^-4	0.917	UPSTREAM CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad
3L	8742072	3L_8742072_SNP [dm3] 3L_8748972_SNP [dm6]	G	T	2.280e^-4	0.917	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26939081	3R_26939081_SNP [dm3] 3R_31113359_SNP [dm6]	G	T	2.288e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11769842	3L_11769842_SNP [dm3] 3L_11776742_SNP [dm6]	A	T	2.290e^-4	0.917	UPSTREAM CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad
2R	9322959	2R_9322959_SNP [dm3] 2R_13435454_SNP [dm6]	C	T	2.295e^-4	0.917	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3L	14963481	3L_14963481_INS [dm3] 3L_14970381_INS [dm6]	A	AA	2.296e^-4	0.917	DOWNSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15792019	3L_15792019_SNP [dm3] 3L_15798919_SNP [dm6]	G	A	2.320e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6505401	2L_6505401_SNP [dm3] 2L_6505401_SNP [dm6]	G	T	2.330e^-4	0.917	INTRON CG31637
2L	7416627	2L_7416627_SNP [dm3] 2L_7416627_SNP [dm6]	C	A	2.333e^-4	0.917	INTRON chm	TF binding site BDTNP1_TFBS_dl
2R	12868165	2R_12868165_SNP [dm3] 2R_16980660_SNP [dm6]	C	T	2.338e^-4	0.917	INTRON Cbp53E
2R	12868169	2R_12868169_SNP [dm3] 2R_16980664_SNP [dm6]	A	T	2.338e^-4	0.917	INTRON Cbp53E
3L	6064252	3L_6064252_SNP [dm3] 3L_6071152_SNP [dm6]	G	A	2.364e^-4	0.917	SYNONYMOUS_CODING CG42269 UPSTREAM CG6602	TF binding site mE1_TFBS_chinmo
2R	17283346	2R_17283346_SNP [dm3] 2R_21395841_SNP [dm6]	C	A	2.394e^-4	0.917	INTRON Sdc
2R	13389475	2R_13389475_SNP [dm3] 2R_17501970_SNP [dm6]	G	T	2.403e^-4	0.917	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14615778	2R_14615778_SNP [dm3] 2R_18728273_SNP [dm6]	G	A	2.405e^-4	0.917	NON_SYNONYMOUS_CODING List UTR_3_PRIME List INTRON Hs3st-A
2R	17654425	2R_17654425_SNP [dm3] 2R_21766920_SNP [dm6]	T	A	2.405e^-4	0.917	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
2L	11618697	2L_11618697_SNP [dm3] 2L_11618697_SNP [dm6]	A	C	2.405e^-4	0.917	INTRON kek2
X	6469764	X_6469764_SNP [dm3] X_6575731_SNP [dm6]	A	T	2.436e^-4	0.917	INTRON CG34417
3L	5859645	3L_5859645_SNP [dm3] 3L_5866545_SNP [dm6]	C	A	2.450e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20681180	2R_20681180_DEL [dm3] 2R_24793657_DEL [dm6]	TT	T	2.455e^-4	0.917	UPSTREAM CR43257 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16914482	3L_16914482_SNP [dm3] 3L_16921382_SNP [dm6]	C	G	2.465e^-4	0.917	INTRON Lmpt
X	5479889	X_5479889_SNP [dm3] X_5585856_SNP [dm6]	G	A	2.467e^-4	0.917	INTERGENIC
2R	10795083	2R_10795083_SNP [dm3] 2R_14907578_SNP [dm6]	T	G	2.485e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795129	2R_10795129_SNP [dm3] 2R_14907624_SNP [dm6]	G	A	2.485e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795155	2R_10795155_SNP [dm3] 2R_14907650_SNP [dm6]	G	A	2.485e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19204280	3R_19204280_SNP [dm3] 3R_23378558_SNP [dm6]	A	T	2.494e^-4	0.917	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
3R	19204289	3R_19204289_SNP [dm3] 3R_23378567_SNP [dm6]	G	C	2.494e^-4	0.917	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
2L	20642240	2L_20642240_SNP [dm3] 2L_20642240_SNP [dm6]	C	T	2.509e^-4	0.917	DOWNSTREAM CG17470 & 1 other INTERGENIC
X	20034102	X_20034102_SNP [dm3] X_20140069_SNP [dm6]	A	G	2.512e^-4	0.917	NON_SYNONYMOUS_CODING CG42583 UPSTREAM CG34332
X	20034118	X_20034118_SNP [dm3] X_20140085_SNP [dm6]	T	A	2.512e^-4	0.917	NON_SYNONYMOUS_CODING CG42583 UPSTREAM CG34332
3R	18474086	3R_18474086_SNP [dm3] 3R_22648364_SNP [dm6]	C	G	2.514e^-4	0.917	INTRON CG45058
X	6377684	X_6377684_SNP [dm3] X_6483651_SNP [dm6]	T	A	2.514e^-4	0.917	INTRON CG42340
2R	20364019	2R_20364019_SNP [dm3] 2R_24476496_SNP [dm6]	C	T	2.541e^-4	0.917	DOWNSTREAM CG16837 INTRON CG13579
2R	20364033	2R_20364033_SNP [dm3] 2R_24476510_SNP [dm6]	T	A	2.541e^-4	0.917	DOWNSTREAM CG16837 INTRON CG13579
3L	16486169	3L_16486169_DEL [dm3] 3L_16493069_DEL [dm6]	ATG	A	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16486183	3L_16486183_SNP [dm3] 3L_16493083_SNP [dm6]	A	C	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16486193	3L_16486193_SNP [dm3] 3L_16493093_SNP [dm6]	T	A	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16486196	3L_16486196_INS [dm3] 3L_16493096_INS [dm6]	T	TA	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16486198	3L_16486198_SNP [dm3] 3L_16493098_SNP [dm6]	C	G	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16486214	3L_16486214_SNP [dm3] 3L_16493114_SNP [dm6]	G	A	2.544e^-4	0.917	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	19852048	3R_19852048_SNP [dm3] 3R_24026326_SNP [dm6]	T	A	2.544e^-4	0.917	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19852066	3R_19852066_SNP [dm3] 3R_24026344_SNP [dm6]	T	C	2.544e^-4	0.917	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16914263	3L_16914263_SNP [dm3] 3L_16921163_SNP [dm6]	C	T	2.546e^-4	0.917	INTRON Lmpt
3L	16914267	3L_16914267_SNP [dm3] 3L_16921167_SNP [dm6]	T	C	2.546e^-4	0.917	INTRON Lmpt
3R	27700030	3R_27700030_SNP [dm3] 3R_31874308_SNP [dm6]	C	G	2.552e^-4	0.917	INTRON heph
X	13818214	X_13818214_SNP [dm3] X_13924181_SNP [dm6]	T	G	2.570e^-4	0.917	INTRON mamo
3R	27700180	3R_27700180_SNP [dm3] 3R_31874458_SNP [dm6]	A	G	2.575e^-4	0.917	INTRON heph
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	2.591e^-4	0.917	UPSTREAM CR44343 INTERGENIC
2R	8176149	2R_8176149_SNP [dm3] 2R_12288644_SNP [dm6]	A	G	2.591e^-4	0.917	INTRON CG42700
3R	21053504	3R_21053504_SNP [dm3] 3R_25227782_SNP [dm6]	G	A	2.604e^-4	0.917	INTRON Cad96Cb
X	3032887	X_3032887_SNP [dm3] X_3138854_SNP [dm6]	G	A	2.612e^-4	0.917	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9322940	2R_9322940_SNP [dm3] 2R_13435435_SNP [dm6]	C	T	2.613e^-4	0.917	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3L	12045345	3L_12045345_SNP [dm3] 3L_12052245_SNP [dm6]	T	G	2.620e^-4	0.917	INTRON rols
3R	18970568	3R_18970568_SNP [dm3] 3R_23144846_SNP [dm6]	A	G	2.639e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	8349905	2R_8349905_SNP [dm3] 2R_12462400_SNP [dm6]	G	A	2.653e^-4	0.917	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	5612982	2R_5612982_SNP [dm3] 2R_9725477_SNP [dm6]	T	A	2.656e^-4	0.917	INTRON sqa
2R	5613542	2R_5613542_SNP [dm3] 2R_9726037_SNP [dm6]	G	T	2.656e^-4	0.917	INTRON sqa
2R	11546104	2R_11546104_SNP [dm3] 2R_15658599_SNP [dm6]	G	A	2.662e^-4	0.917	INTRON fus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	18086841	X_18086841_SNP [dm3] X_18192808_SNP [dm6]	A	G	2.726e^-4	0.917	INTRON Frq2
3R	22515445	3R_22515445_SNP [dm3] 3R_26689723_SNP [dm6]	A	C	2.732e^-4	0.917	INTERGENIC
2L	19814596	2L_19814596_SNP [dm3] 2L_19814596_SNP [dm6]	G	T	2.742e^-4	0.917	UPSTREAM CG13962 INTRON sick
2R	15102358	2R_15102358_SNP [dm3] 2R_19214853_SNP [dm6]	G	A	2.744e^-4	0.917	INTRON hppy
3L	3788319	3L_3788319_SNP [dm3] 3L_3788319_SNP [dm6]	A	G	2.749e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15773537	3R_15773537_SNP [dm3] 3R_19947815_SNP [dm6]	A	G	2.779e^-4	0.917	UPSTREAM CG4783 INTRON Hs6st
2R	5431925	2R_5431925_SNP [dm3] 2R_9544420_SNP [dm6]	A	T	2.786e^-4	0.917	UTR_3_PRIME CG1888 DOWNSTREAM CG1888	TF binding site BDTNP1_TFBS_dl
3R	25928031	3R_25928031_SNP [dm3] 3R_30102309_SNP [dm6]	C	T	2.793e^-4	0.917	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16985760	3L_16985760_SNP [dm3] 3L_16992660_SNP [dm6]	C	T	2.799e^-4	0.917	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
X	5976363	X_5976363_SNP [dm3] X_6082330_SNP [dm6]	A	C	2.847e^-4	0.917	UPSTREAM CG4660 DOWNSTREAM raptor & 1 other INTERGENIC
3L	7190303	3L_7190303_SNP [dm3] 3L_7197203_SNP [dm6]	C	T	2.856e^-4	0.917	INTERGENIC
3R	22135667	3R_22135667_SNP [dm3] 3R_26309945_SNP [dm6]	A	C	2.869e^-4	0.917	INTERGENIC
X	1089214	X_1089214_SNP [dm3] X_1195181_SNP [dm6]	C	T	2.869e^-4	0.917	NON_SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19138442	3R_19138442_SNP [dm3] 3R_23312720_SNP [dm6]	C	T	2.877e^-4	0.917	INTRON pnt
3R	11212143	3R_11212143_SNP [dm3] 3R_15386421_SNP [dm6]	G	T	2.878e^-4	0.917	INTRON Rbp	TF binding site mE1_TFBS_cad
3L	14149777	3L_14149777_SNP [dm3] 3L_14156677_SNP [dm6]	A	C	2.883e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9201065	2R_9201065_SNP [dm3] 2R_13313560_SNP [dm6]	G	A	2.906e^-4	0.917	INTERGENIC
X	1076230	X_1076230_SNP [dm3] X_1182197_SNP [dm6]	G	T	2.906e^-4	0.917	SYNONYMOUS_CODING CG14627 DOWNSTREAM CG11379	TF binding site mE1_TFBS_chinmo
X	1076614	X_1076614_SNP [dm3] X_1182581_SNP [dm6]	T	C	2.906e^-4	0.917	SYNONYMOUS_CODING CG14627	TF binding site mE1_TFBS_chinmo
X	1076950	X_1076950_SNP [dm3] X_1182917_SNP [dm6]	T	A	2.906e^-4	0.917	UTR_3_PRIME CG14627
X	1077162	X_1077162_SNP [dm3] X_1183129_SNP [dm6]	C	T	2.906e^-4	0.917	UTR_3_PRIME CG14627
X	1077164	X_1077164_SNP [dm3] X_1183131_SNP [dm6]	C	A	2.906e^-4	0.917	UTR_3_PRIME CG14627
X	1077165	X_1077165_INS [dm3] X_1183132_INS [dm6]	A	AGTTTTTTTCATTGG...	2.906e^-4	0.917	UTR_3_PRIME CG14627
X	1078181	X_1078181_SNP [dm3] X_1184148_SNP [dm6]	G	A	2.906e^-4	0.917	UPSTREAM CG14626 DOWNSTREAM CG14627 INTERGENIC
X	1079329	X_1079329_SNP [dm3] X_1185296_SNP [dm6]	G	C	2.906e^-4	0.917	INTRON CG14626
X	1079347	X_1079347_SNP [dm3] X_1185314_SNP [dm6]	G	T	2.906e^-4	0.917	INTRON CG14626
X	1081242	X_1081242_SNP [dm3] X_1187209_SNP [dm6]	T	A	2.906e^-4	0.917	INTRON CG14626	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1082566	X_1082566_SNP [dm3] X_1188533_SNP [dm6]	G	C	2.906e^-4	0.917	UTR_3_PRIME CG14626
X	1083911	X_1083911_SNP [dm3] X_1189878_SNP [dm6]	G	T	2.906e^-4	0.917	INTERGENIC
X	1085811	X_1085811_SNP [dm3] X_1191778_SNP [dm6]	A	G	2.906e^-4	0.917	INTRON CG11380
X	1087447	X_1087447_SNP [dm3] X_1193414_SNP [dm6]	T	C	2.906e^-4	0.917	INTRON CG11380
X	1088973	X_1088973_SNP [dm3] X_1194940_SNP [dm6]	G	A	2.906e^-4	0.917	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1090801	X_1090801_SNP [dm3] X_1196768_SNP [dm6]	A	G	2.906e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC
X	1090848	X_1090848_SNP [dm3] X_1196815_SNP [dm6]	T	G	2.906e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC
X	1091125	X_1091125_SNP [dm3] X_1197092_SNP [dm6]	G	A	2.906e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091747	X_1091747_SNP [dm3] X_1197714_SNP [dm6]	T	C	2.906e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1091797	X_1091797_SNP [dm3] X_1197764_SNP [dm6]	C	T	2.906e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1091802	X_1091802_SNP [dm3] X_1197769_SNP [dm6]	C	T	2.906e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1091811	X_1091811_SNP [dm3] X_1197778_SNP [dm6]	C	T	2.906e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1091826	X_1091826_SNP [dm3] X_1197793_SNP [dm6]	G	A	2.906e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1093713	X_1093713_SNP [dm3] X_1199680_SNP [dm6]	T	C	2.906e^-4	0.917	INTRON CG14625
X	1093845	X_1093845_SNP [dm3] X_1199812_SNP [dm6]	A	T	2.906e^-4	0.917	INTRON CG14625
X	1093885	X_1093885_SNP [dm3] X_1199852_SNP [dm6]	T	C	2.906e^-4	0.917	INTRON CG14625
X	1093954	X_1093954_SNP [dm3] X_1199921_SNP [dm6]	G	T	2.906e^-4	0.917	INTRON CG14625
X	1094618	X_1094618_SNP [dm3] X_1200585_SNP [dm6]	T	C	2.906e^-4	0.917	INTRON CG14625
X	549018	X_549018_SNP [dm3] X_654985_SNP [dm6]	T	C	2.906e^-4	0.917	UPSTREAM Hmt4-20 INTRON Hmt4-20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	887050	X_887050_SNP [dm3] X_993017_SNP [dm6]	A	T	2.906e^-4	0.917	INTERGENIC
3L	14048652	3L_14048652_SNP [dm3] 3L_14055552_SNP [dm6]	A	C	2.911e^-4	0.917	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4856745	2R_4856745_SNP [dm3] 2R_8969240_SNP [dm6]	T	C	2.944e^-4	0.917	DOWNSTREAM CG8213 INTERGENIC
3L	14676838	3L_14676838_SNP [dm3] 3L_14683738_SNP [dm6]	G	T	2.984e^-4	0.917	INTRON ome
3L	7087435	3L_7087435_SNP [dm3] 3L_7094335_SNP [dm6]	T	C	2.985e^-4	0.917	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3R	24579046	3R_24579046_SNP [dm3] 3R_28753324_SNP [dm6]	G	T	2.990e^-4	0.917	INTERGENIC
X	20034130	X_20034130_SNP [dm3] X_20140097_SNP [dm6]	T	C	2.991e^-4	0.917	NON_SYNONYMOUS_CODING CG42583 UPSTREAM CG34332
3R	14237860	3R_14237860_SNP [dm3] 3R_18412138_SNP [dm6]	G	C	2.992e^-4	0.917	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	21731114	3R_21731114_SNP [dm3] 3R_25905392_SNP [dm6]	C	T	2.994e^-4	0.917	DOWNSTREAM CR43259 INTRON CR43259
2R	7962348	2R_7962348_SNP [dm3] 2R_12074843_SNP [dm6]	G	C	3.018e^-4	0.917	INTRON CG8888
3L	4341073	3L_4341073_SNP [dm3] 3L_4341073_SNP [dm6]	A	G	3.038e^-4	0.917	INTRON Cip4
X	1087483	X_1087483_SNP [dm3] X_1193450_SNP [dm6]	G	T	3.058e^-4	0.917	INTRON CG11380	TF binding site mE1_TFBS_HSA
X	1087501	X_1087501_SNP [dm3] X_1193468_SNP [dm6]	G	A	3.058e^-4	0.917	INTRON CG11380	TF binding site mE1_TFBS_HSA
X	1087504	X_1087504_SNP [dm3] X_1193471_SNP [dm6]	C	T	3.058e^-4	0.917	INTRON CG11380	TF binding site mE1_TFBS_HSA
X	1087507	X_1087507_SNP [dm3] X_1193474_SNP [dm6]	T	G	3.058e^-4	0.917	INTRON CG11380	TF binding site mE1_TFBS_HSA
3L	2509145	3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6]	A	T	3.059e^-4	0.917	INTRON Spn
3R	11709496	3R_11709496_SNP [dm3] 3R_15883774_SNP [dm6]	G	C	3.074e^-4	0.917	INTERGENIC
3R	17761230	3R_17761230_SNP [dm3] 3R_21935508_SNP [dm6]	G	A	3.076e^-4	0.917	INTERGENIC
2L	16466405	2L_16466405_SNP [dm3] 2L_16466405_SNP [dm6]	C	A	3.078e^-4	0.917	DOWNSTREAM dac INTERGENIC	regulatory region REDfly_CRMs
2L	20652656	2L_20652656_SNP [dm3] 2L_20652656_SNP [dm6]	G	T	3.082e^-4	0.917	NON_SYNONYMOUS_CODING bru
3R	25585859	3R_25585859_SNP [dm3] 3R_29760137_SNP [dm6]	A	G	3.083e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8385541	3L_8385541_SNP [dm3] 3L_8392441_SNP [dm6]	T	C	3.096e^-4	0.917	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	1091295	X_1091295_SNP [dm3] X_1197262_SNP [dm6]	G	A	3.114e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11144926	3L_11144926_SNP [dm3] 3L_11151826_SNP [dm6]	T	G	3.128e^-4	0.917	INTRON CG32082
3L	16914260	3L_16914260_SNP [dm3] 3L_16921160_SNP [dm6]	G	T	3.130e^-4	0.917	INTRON Lmpt
X	2200278	X_2200278_INS [dm3] X_2306245_INS [dm6]	A	ATTA	3.137e^-4	0.917	INTRON phl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	2284532	X_2284532_INS [dm3] X_2390499_INS [dm6]	T	AC	3.166e^-4	0.917	INTERGENIC
2R	10986796	2R_10986796_SNP [dm3] 2R_15099291_SNP [dm6]	G	T	3.174e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16407390	3R_16407390_SNP [dm3] 3R_20581668_SNP [dm6]	C	T	3.182e^-4	0.917	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
X	1082929	X_1082929_SNP [dm3] X_1188896_SNP [dm6]	C	A	3.193e^-4	0.917	DOWNSTREAM CG14626 INTERGENIC
X	1091676	X_1091676_SNP [dm3] X_1197643_SNP [dm6]	T	C	3.193e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14081228	2R_14081228_SNP [dm3] 2R_18193723_SNP [dm6]	G	T	3.224e^-4	0.917	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	20034103	X_20034103_SNP [dm3] X_20140070_SNP [dm6]	T	A	3.227e^-4	0.917	NON_SYNONYMOUS_CODING CG42583 UPSTREAM CG34332
3L	15197904	3L_15197904_SNP [dm3] 3L_15204804_SNP [dm6]	A	T	3.235e^-4	0.917	INTERGENIC
3L	5885615	3L_5885615_SNP [dm3] 3L_5892515_SNP [dm6]	T	G	3.236e^-4	0.917	INTERGENIC
2R	9829028	2R_9829028_SNP [dm3] 2R_13941523_SNP [dm6]	G	T	3.241e^-4	0.917	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3788214	3L_3788214_SNP [dm3] 3L_3788214_SNP [dm6]	T	G	3.254e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14237782	3R_14237782_INS [dm3] 3R_18412060_INS [dm6]	G	GCGAA	3.257e^-4	0.917	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11142189	3L_11142189_SNP [dm3] 3L_11149089_SNP [dm6]	A	T	3.259e^-4	0.917	DOWNSTREAM CG6216 INTRON CG32082
3L	7384326	3L_7384326_SNP [dm3] 3L_7391226_SNP [dm6]	G	T	3.259e^-4	0.917	UTR_5_PRIME CG8563
3R	22071753	3R_22071753_SNP [dm3] 3R_26246031_SNP [dm6]	A	T	3.259e^-4	0.917	INTRON CR42745
3R	23297804	3R_23297804_SNP [dm3] 3R_27472082_SNP [dm6]	A	T	3.259e^-4	0.917	INTERGENIC
X	14392716	X_14392716_SNP [dm3] X_14498683_SNP [dm6]	C	A	3.259e^-4	0.917	INTERGENIC
X	4998689	X_4998689_SNP [dm3] X_5104656_SNP [dm6]	G	C	3.259e^-4	0.917	INTRON rg & 1 other
X	6247644	X_6247644_SNP [dm3] X_6353611_SNP [dm6]	G	A	3.259e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	6248815	X_6248815_SNP [dm3] X_6354782_SNP [dm6]	G	A	3.259e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
2R	18301834	2R_18301834_SNP [dm3] 2R_22414329_SNP [dm6]	G	T	3.259e^-4	0.917	INTRON qkr58E-1	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	27280059	3R_27280059_SNP [dm3] 3R_31454337_SNP [dm6]	G	A	3.267e^-4	0.917	INTRON Gprk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10905511	2L_10905511_SNP [dm3] 2L_10905511_SNP [dm6]	T	A	3.279e^-4	0.917	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	7561425	2R_7561425_SNP [dm3] 2R_11673920_SNP [dm6]	G	A	3.282e^-4	0.917	NON_SYNONYMOUS_CODING Tret1-1 INTRON Roc2
2R	7561428	2R_7561428_SNP [dm3] 2R_11673923_SNP [dm6]	C	G	3.282e^-4	0.917	NON_SYNONYMOUS_CODING Tret1-1 INTRON Roc2
3R	17181119	3R_17181119_SNP [dm3] 3R_21355397_SNP [dm6]	C	A	3.287e^-4	0.917	SYNONYMOUS_CODING mod_mdg4_ UTR_3_PRIME mod_mdg4_ DOWNSTREAM pre-mod_mdg4_-K & 6 others INTRON mod_mdg4_
3L	11264765	3L_11264765_SNP [dm3] 3L_11271665_SNP [dm6]	A	C	3.292e^-4	0.917	INTERGENIC
3L	14757402	3L_14757402_SNP [dm3] 3L_14764302_SNP [dm6]	C	T	3.300e^-4	0.917	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
3R	20892358	3R_20892358_SNP [dm3] 3R_25066636_SNP [dm6]	C	T	3.301e^-4	0.917	UTR_3_PRIME PQBP1 DOWNSTREAM OstStt3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13453467	3L_13453467_SNP [dm3] 3L_13460367_SNP [dm6]	G	A	3.315e^-4	0.917	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27146970	3R_27146970_SNP [dm3] 3R_31321248_SNP [dm6]	C	T	3.317e^-4	0.917	INTRON CG34347
2R	18678296	2R_18678296_SNP [dm3] 2R_22790791_SNP [dm6]	T	A	3.317e^-4	0.917	INTRON CG42260
3L	14424972	3L_14424972_SNP [dm3] 3L_14431872_SNP [dm6]	T	C	3.320e^-4	0.917	INTRON bbg
3L	2702612	3L_2702612_SNP [dm3] 3L_2702612_SNP [dm6]	T	A	3.333e^-4	0.917	INTRON Fife
3R	24550666	3R_24550666_SNP [dm3] 3R_28724944_SNP [dm6]	G	A	3.336e^-4	0.917	INTRON htt
2R	19128558	2R_19128558_INS [dm3] 2R_23241035_INS [dm6]	A	AA	3.341e^-4	0.917	INTERGENIC
X	14093466	X_14093466_SNP [dm3] X_14199433_SNP [dm6]	C	T	3.342e^-4	0.917	SYNONYMOUS_CODING yl UPSTREAM mir-4917 & 1 other	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21833379	3R_21833379_SNP [dm3] 3R_26007657_SNP [dm6]	A	C	3.455e^-4	0.917	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12231734	3L_12231734_SNP [dm3] 3L_12238634_SNP [dm6]	A	C	3.460e^-4	0.917	INTRON app
3L	12231762	3L_12231762_SNP [dm3] 3L_12238662_SNP [dm6]	G	A	3.460e^-4	0.917	INTRON app
2L	15742725	2L_15742725_DEL [dm3] 2L_15742725_DEL [dm6]	GCGATAATATCC...	G	3.466e^-4	0.917	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
X	6248771	X_6248771_SNP [dm3] X_6354738_SNP [dm6]	T	C	3.474e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5231038	3L_5231038_SNP [dm3] 3L_5237938_SNP [dm6]	A	C	3.486e^-4	0.917	INTRON shep
2L	9166000	2L_9166000_SNP [dm3] 2L_9166000_SNP [dm6]	A	C	3.499e^-4	0.917	SYNONYMOUS_CODING CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18991825	3R_18991825_SNP [dm3] 3R_23166103_SNP [dm6]	T	A	3.502e^-4	0.917	INTERGENIC
3R	18991835	3R_18991835_SNP [dm3] 3R_23166113_SNP [dm6]	T	A	3.502e^-4	0.917	INTERGENIC
2L	18250700	2L_18250700_SNP [dm3] 2L_18250700_SNP [dm6]	G	T	3.507e^-4	0.917	UPSTREAM CG43406 INTRON CG42750
3L	3788212	3L_3788212_SNP [dm3] 3L_3788212_SNP [dm6]	T	G	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788215	3L_3788215_SNP [dm3] 3L_3788215_SNP [dm6]	T	A	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788217	3L_3788217_SNP [dm3] 3L_3788217_SNP [dm6]	C	T	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788222	3L_3788222_SNP [dm3] 3L_3788222_SNP [dm6]	A	T	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788224	3L_3788224_SNP [dm3] 3L_3788224_SNP [dm6]	A	T	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788227	3L_3788227_SNP [dm3] 3L_3788227_SNP [dm6]	A	T	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788234	3L_3788234_INS [dm3] 3L_3788234_INS [dm6]	T	TTACGGAACTATATT...	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3788246	3L_3788246_SNP [dm3] 3L_3788246_SNP [dm6]	T	C	3.522e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23836690	3R_23836690_INS [dm3] 3R_28010968_INS [dm6]	T	TT	3.523e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3834248	2L_3834248_SNP [dm3] 2L_3834248_SNP [dm6]	A	G	3.533e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	10500654	X_10500654_SNP [dm3] X_10606621_SNP [dm6]	A	T	3.539e^-4	0.917	NON_SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_dl
3L	6066234	3L_6066234_SNP [dm3] 3L_6073134_SNP [dm6]	C	G	3.560e^-4	0.917	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG13295
2R	19125551	2R_19125551_SNP [dm3] 2R_23238028_SNP [dm6]	T	A	3.572e^-4	0.917	INTERGENIC
X	9044473	X_9044473_SNP [dm3] X_9150440_SNP [dm6]	G	C	3.572e^-4	0.917	NON_SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6065530	3L_6065530_SNP [dm3] 3L_6072430_SNP [dm6]	T	G	3.586e^-4	0.917	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14743199	3L_14743199_SNP [dm3] 3L_14750099_SNP [dm6]	T	C	3.587e^-4	0.917	DOWNSTREAM Trl INTRON Trl & 1 other
3L	11319829	3L_11319829_SNP [dm3] 3L_11326729_SNP [dm6]	T	A	3.589e^-4	0.917	INTERGENIC
3L	9137849	3L_9137849_SNP [dm3] 3L_9144749_SNP [dm6]	G	T	3.589e^-4	0.917	UTR_3_PRIME nwk DOWNSTREAM mir-4940
3L	3026694	3L_3026694_SNP [dm3] 3L_3026694_SNP [dm6]	G	A	3.604e^-4	0.917	UPSTREAM aly INTERGENIC
3L	3026696	3L_3026696_INS [dm3] 3L_3026696_INS [dm6]	T	TA	3.604e^-4	0.917	UPSTREAM aly INTERGENIC
2R	16056801	2R_16056801_SNP [dm3] 2R_20169296_SNP [dm6]	A	G	3.610e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6065517	3L_6065517_SNP [dm3] 3L_6072417_SNP [dm6]	C	A	3.612e^-4	0.917	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_sens
3L	6065543	3L_6065543_SNP [dm3] 3L_6072443_SNP [dm6]	G	T	3.612e^-4	0.917	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6598976	2R_6598976_SNP [dm3] 2R_10711471_SNP [dm6]	T	C	3.616e^-4	0.917	SYNONYMOUS_CODING stan
3R	26597644	3R_26597644_SNP [dm3] 3R_30771922_SNP [dm6]	G	A	3.621e^-4	0.917	INTRON zfh1
X	13696865	X_13696865_SNP [dm3] X_13802832_SNP [dm6]	T	A	3.630e^-4	0.917	INTRON inaE
3R	26163469	3R_26163469_SNP [dm3] 3R_30337747_SNP [dm6]	C	T	3.641e^-4	0.917	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18703628	2R_18703628_SNP [dm3] 2R_22816123_SNP [dm6]	A	T	3.645e^-4	0.917	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
2R	18703697	2R_18703697_SNP [dm3] 2R_22816192_SNP [dm6]	T	A	3.645e^-4	0.917	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
X	14540075	X_14540075_SNP [dm3] X_14646042_SNP [dm6]	A	G	3.645e^-4	0.917	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9859733	3L_9859733_SNP [dm3] 3L_9866633_SNP [dm6]	C	T	3.658e^-4	0.917	INTRON CG8108
2R	19451101	2R_19451101_SNP [dm3] 2R_23563578_SNP [dm6]	G	C	3.662e^-4	0.917	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15197895	3L_15197895_SNP [dm3] 3L_15204795_SNP [dm6]	T	C	3.667e^-4	0.917	INTERGENIC
3R	19500420	3R_19500420_SNP [dm3] 3R_23674698_SNP [dm6]	A	G	3.667e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19500428	3R_19500428_SNP [dm3] 3R_23674706_SNP [dm6]	T	A	3.667e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26939076	3R_26939076_SNP [dm3] 3R_31113354_SNP [dm6]	T	C	3.669e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14743209	3L_14743209_SNP [dm3] 3L_14750109_SNP [dm6]	A	T	3.674e^-4	0.917	DOWNSTREAM Trl INTRON Trl & 1 other
3R	16336823	3R_16336823_SNP [dm3] 3R_20511101_SNP [dm6]	G	A	3.675e^-4	0.917	UPSTREAM CG4288 INTRON CG4288
2R	1387657	2R_1387657_SNP [dm3] 2R_5500152_SNP [dm6]	G	A	3.683e^-4	0.917	INTRON CG30438
2R	1387659	2R_1387659_SNP [dm3] 2R_5500154_SNP [dm6]	A	T	3.683e^-4	0.917	INTRON CG30438
3R	13266188	3R_13266188_SNP [dm3] 3R_17440466_SNP [dm6]	A	G	3.686e^-4	0.917	INTRON CG5873 & 1 other
X	17288487	X_17288487_SNP [dm3] X_17394454_SNP [dm6]	A	G	3.695e^-4	0.917	INTERGENIC
3L	17128792	3L_17128792_SNP [dm3] 3L_17135692_SNP [dm6]	A	T	3.704e^-4	0.917	INTRON Rbp6
3R	21477362	3R_21477362_SNP [dm3] 3R_25651640_SNP [dm6]	G	C	3.704e^-4	0.917	DOWNSTREAM mir-92b INTERGENIC
2R	9277621	2R_9277621_SNP [dm3] 2R_13390116_SNP [dm6]	A	T	3.708e^-4	0.917	NON_SYNONYMOUS_CODING CG43691
3L	15607412	3L_15607412_SNP [dm3] 3L_15614312_SNP [dm6]	G	C	3.710e^-4	0.917	INTRON comm3
X	20452687	X_20452687_SNP [dm3] X_20581660_SNP [dm6]	C	T	3.713e^-4	0.917	INTERGENIC
2L	1940322	2L_1940322_SNP [dm3] 2L_1940322_SNP [dm6]	C	T	3.743e^-4	0.917	SYNONYMOUS_CODING CG7337 INTRON CG7337
3L	9610257	3L_9610257_SNP [dm3] 3L_9617157_SNP [dm6]	G	T	3.783e^-4	0.917	UTR_5_PRIME LanB2	TF binding site mE1_TFBS_inv
3R	21726167	3R_21726167_SNP [dm3] 3R_25900445_SNP [dm6]	T	G	3.833e^-4	0.917	START_GAINED CG31091 UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2R	15094552	2R_15094552_INS [dm3] 2R_19207047_INS [dm6]	A	ATGGGGGTTTT...	3.839e^-4	0.917	INTRON hppy
3L	16573520	3L_16573520_SNP [dm3] 3L_16580420_SNP [dm6]	T	C	3.850e^-4	0.917	UTR_3_PRIME Smn UPSTREAM nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14385223	2R_14385223_SNP [dm3] 2R_18497718_SNP [dm6]	G	A	3.857e^-4	0.917	INTRON CG30116
2R	15094529	2R_15094529_SNP [dm3] 2R_19207024_SNP [dm6]	G	T	3.859e^-4	0.917	INTRON hppy
2R	19167290	2R_19167290_SNP [dm3] 2R_23279767_SNP [dm6]	G	A	3.859e^-4	0.917	INTERGENIC
3L	3270034	3L_3270034_SNP [dm3] 3L_3270034_SNP [dm6]	A	C	3.871e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2003998	3L_2003998_SNP [dm3] 3L_2003998_SNP [dm6]	T	A	3.906e^-4	0.917	INTRON CG42841
2R	18664031	2R_18664031_SNP [dm3] 2R_22776526_SNP [dm6]	G	A	3.906e^-4	0.917	INTRON CG42260
2R	13165802	2R_13165802_SNP [dm3] 2R_17278297_SNP [dm6]	C	G	3.918e^-4	0.917	INTRON mbl
3L	11264680	3L_11264680_SNP [dm3] 3L_11271580_SNP [dm6]	A	T	3.940e^-4	0.917	INTERGENIC
3L	11264682	3L_11264682_SNP [dm3] 3L_11271582_SNP [dm6]	T	A	3.940e^-4	0.917	INTERGENIC
3L	11264684	3L_11264684_SNP [dm3] 3L_11271584_SNP [dm6]	C	T	3.940e^-4	0.917	INTERGENIC
3L	11264686	3L_11264686_SNP [dm3] 3L_11271586_SNP [dm6]	C	A	3.940e^-4	0.917	INTERGENIC
3L	11264687	3L_11264687_SNP [dm3] 3L_11271587_SNP [dm6]	G	A	3.940e^-4	0.917	INTERGENIC
3L	11264710	3L_11264710_SNP [dm3] 3L_11271610_SNP [dm6]	G	A	3.940e^-4	0.917	INTERGENIC
3L	11264732	3L_11264732_SNP [dm3] 3L_11271632_SNP [dm6]	G	T	3.940e^-4	0.917	INTERGENIC
3L	10368699	3L_10368699_SNP [dm3] 3L_10375599_SNP [dm6]	T	C	3.963e^-4	0.917	INTERGENIC
3L	11319854	3L_11319854_SNP [dm3] 3L_11326754_SNP [dm6]	A	G	3.984e^-4	0.917	INTERGENIC
3R	18793904	3R_18793904_SNP [dm3] 3R_22968182_SNP [dm6]	C	T	3.994e^-4	0.917	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15410202	2R_15410202_SNP [dm3] 2R_19522697_SNP [dm6]	A	G	3.995e^-4	0.917	UTR_3_PRIME sm
3R	9157413	3R_9157413_INS [dm3] 3R_13331691_INS [dm6]	T	TAAGTGTTTAACTAAATGGC...	4.016e^-4	0.917	INTRON PK2-R2
3L	936241	3L_936241_SNP [dm3] 3L_936241_SNP [dm6]	A	C	4.021e^-4	0.917	INTRON Glut1	TF binding site mE1_TFBS_chinmo
2R	17311283	2R_17311283_SNP [dm3] 2R_21423778_SNP [dm6]	T	C	4.023e^-4	0.917	INTRON Sdc
3R	3974612	3R_3974612_SNP [dm3] 3R_8148890_SNP [dm6]	T	C	4.027e^-4	0.917	UTR_3_PRIME grn
2R	19124802	2R_19124802_SNP [dm3] 2R_23237279_SNP [dm6]	T	A	4.031e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6682606	2R_6682606_SNP [dm3] 2R_10795101_SNP [dm6]	T	A	4.032e^-4	0.917	INTRON CG33144
3L	12263183	3L_12263183_SNP [dm3] 3L_12270083_SNP [dm6]	G	T	4.046e^-4	0.917	UTR_3_PRIME Pbgs DOWNSTREAM CG32100
3L	3788218	3L_3788218_INS [dm3] 3L_3788218_INS [dm6]	A	AGTT	4.059e^-4	0.917	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17234045	3R_17234045_SNP [dm3] 3R_21408323_SNP [dm6]	A	T	4.068e^-4	0.917	UTR_3_PRIME CheB93a UPSTREAM CheB93b	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	10852639	X_10852639_SNP [dm3] X_10958606_SNP [dm6]	C	A	4.084e^-4	0.917	INTRON Myo10A
3L	14958435	3L_14958435_INS [dm3] 3L_14965335_INS [dm6]	T	TTTCT	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958442	3L_14958442_SNP [dm3] 3L_14965342_SNP [dm6]	G	C	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958454	3L_14958454_INS [dm3] 3L_14965354_INS [dm6]	G	GTTA	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958457	3L_14958457_SNP [dm3] 3L_14965357_SNP [dm6]	A	C	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958462	3L_14958462_INS [dm3] 3L_14965362_INS [dm6]	G	TCCAAGACAAAC...	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958468	3L_14958468_SNP [dm3] 3L_14965368_SNP [dm6]	T	A	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958471	3L_14958471_SNP [dm3] 3L_14965371_SNP [dm6]	A	G	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958473	3L_14958473_SNP [dm3] 3L_14965373_SNP [dm6]	A	G	4.092e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5589438	3L_5589438_SNP [dm3] 3L_5596338_SNP [dm6]	T	C	4.092e^-4	0.917	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4844209	3L_4844209_DEL [dm3] 3L_4844209_DEL [dm6]	CAGGGTATACAG...	TC	4.103e^-4	0.917	INTERGENIC
3L	14765152	3L_14765152_SNP [dm3] 3L_14772052_SNP [dm6]	C	A	4.104e^-4	0.917	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4736089	3L_4736089_SNP [dm3] 3L_4736089_SNP [dm6]	T	C	4.104e^-4	0.917	INTRON RhoGEF64C
3L	19169189	3L_19169189_SNP [dm3] 3L_19176089_SNP [dm6]	G	A	4.107e^-4	0.917	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13163963	2R_13163963_SNP [dm3] 2R_17276458_SNP [dm6]	G	C	4.113e^-4	0.917	INTRON mbl
2R	13167464	2R_13167464_SNP [dm3] 2R_17279959_SNP [dm6]	C	G	4.113e^-4	0.917	INTRON mbl
2R	14836625	2R_14836625_SNP [dm3] 2R_18949120_SNP [dm6]	A	T	4.116e^-4	0.917	INTRON sano
3L	7929967	3L_7929967_SNP [dm3] 3L_7936867_SNP [dm6]	C	A	4.129e^-4	0.917	UTR_3_PRIME Srp9 UPSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7929973	3L_7929973_SNP [dm3] 3L_7936873_SNP [dm6]	A	G	4.129e^-4	0.917	UTR_3_PRIME Srp9 UPSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7987284	2R_7987284_SNP [dm3] 2R_12099779_SNP [dm6]	A	G	4.133e^-4	0.917	INTRON jeb	TF binding site mE1_TFBS_Trl
2R	7542864	2R_7542864_SNP [dm3] 2R_11655359_SNP [dm6]	A	T	4.137e^-4	0.917	SPLICE_SITE_REGION CG13198 INTRON Roc2 & 1 other
X	16794493	X_16794493_SNP [dm3] X_16900460_SNP [dm6]	A	G	4.174e^-4	0.917	INTERGENIC
3L	8683533	3L_8683533_DEL [dm3] 3L_8690433_DEL [dm6]	GG	G	4.177e^-4	0.917	INTERGENIC
2R	19931012	2R_19931012_SNP [dm3] 2R_24043489_SNP [dm6]	A	G	4.189e^-4	0.917	SYNONYMOUS_CODING IntS1 DOWNSTREAM tsr	TF binding site mE1_TFBS_sens
X	1078252	X_1078252_SNP [dm3] X_1184219_SNP [dm6]	T	C	4.190e^-4	0.917	UPSTREAM CG14626 DOWNSTREAM CG14627 INTERGENIC	TF binding site mE1_TFBS_sens
X	497489	X_497489_SNP [dm3] X_603456_SNP [dm6]	A	G	4.208e^-4	0.917	INTRON CG13366
3L	11320272	3L_11320272_SNP [dm3] 3L_11327172_SNP [dm6]	T	A	4.209e^-4	0.917	INTERGENIC
2R	13301549	2R_13301549_DEL [dm3] 2R_17414044_DEL [dm6]	CC	C	4.213e^-4	0.917	UTR_3_PRIME cnk DOWNSTREAM Prosalpha5
2L	5900268	2L_5900268_SNP [dm3] 2L_5900268_SNP [dm6]	T	G	4.215e^-4	0.917	EXON CR44579
2R	12868224	2R_12868224_SNP [dm3] 2R_16980719_SNP [dm6]	G	A	4.215e^-4	0.917	INTRON Cbp53E
2R	18333983	2R_18333983_SNP [dm3] 2R_22446478_SNP [dm6]	T	C	4.215e^-4	0.917	INTERGENIC
2R	18333993	2R_18333993_SNP [dm3] 2R_22446488_SNP [dm6]	T	G	4.215e^-4	0.917	INTERGENIC
2R	18515504	2R_18515504_SNP [dm3] 2R_22627999_SNP [dm6]	A	G	4.215e^-4	0.917	INTRON CG33143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19167023	2R_19167023_SNP [dm3] 2R_23279500_SNP [dm6]	T	C	4.215e^-4	0.917	INTERGENIC
2R	9551922	2R_9551922_SNP [dm3] 2R_13664417_SNP [dm6]	C	T	4.215e^-4	0.917	UPSTREAM CG6209 & 1 other INTRON fas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15197883	3L_15197883_INS [dm3] 3L_15204783_INS [dm6]	G	ATTCAGTATT	4.215e^-4	0.917	INTERGENIC
3L	15197914	3L_15197914_SNP [dm3] 3L_15204814_SNP [dm6]	A	T	4.215e^-4	0.917	INTERGENIC
3L	15197918	3L_15197918_INS [dm3] 3L_15204818_INS [dm6]	G	GACCTACTATAAGCGAGAGA...	4.215e^-4	0.917	INTERGENIC
3L	15197927	3L_15197927_SNP [dm3] 3L_15204827_SNP [dm6]	C	G	4.215e^-4	0.917	INTERGENIC
3L	15197997	3L_15197997_SNP [dm3] 3L_15204897_SNP [dm6]	C	T	4.215e^-4	0.917	INTERGENIC
3L	15197999	3L_15197999_SNP [dm3] 3L_15204899_SNP [dm6]	A	T	4.215e^-4	0.917	INTERGENIC
3L	15198002	3L_15198002_DEL [dm3] 3L_15204902_DEL [dm6]	AAAATTAAGAAG...	A	4.215e^-4	0.917	INTERGENIC
3L	8375820	3L_8375820_SNP [dm3] 3L_8382720_SNP [dm6]	C	A	4.215e^-4	0.917	INTRON ImpE1	TF binding site mE1_TFBS_inv
3R	18476065	3R_18476065_SNP [dm3] 3R_22650343_SNP [dm6]	T	C	4.215e^-4	0.917	INTRON CG45058
3R	18476323	3R_18476323_SNP [dm3] 3R_22650601_SNP [dm6]	G	A	4.215e^-4	0.917	INTRON CG45058
3R	18476349	3R_18476349_SNP [dm3] 3R_22650627_SNP [dm6]	G	A	4.215e^-4	0.917	INTRON CG45058
3R	18476352	3R_18476352_SNP [dm3] 3R_22650630_SNP [dm6]	G	A	4.215e^-4	0.917	INTRON CG45058
3R	18476354	3R_18476354_SNP [dm3] 3R_22650632_SNP [dm6]	T	C	4.215e^-4	0.917	INTRON CG45058
3R	18476367	3R_18476367_SNP [dm3] 3R_22650645_SNP [dm6]	A	G	4.215e^-4	0.917	INTRON CG45058
3R	18476405	3R_18476405_SNP [dm3] 3R_22650683_SNP [dm6]	T	A	4.215e^-4	0.917	INTRON CG45058
3R	18476422	3R_18476422_SNP [dm3] 3R_22650700_SNP [dm6]	C	T	4.215e^-4	0.917	INTRON CG45058
3R	18476423	3R_18476423_SNP [dm3] 3R_22650701_SNP [dm6]	A	T	4.215e^-4	0.917	INTRON CG45058
3R	21704020	3R_21704020_SNP [dm3] 3R_25878298_SNP [dm6]	T	A	4.215e^-4	0.917	INTRON Tsp96F
3R	22032834	3R_22032834_SNP [dm3] 3R_26207112_SNP [dm6]	C	T	4.215e^-4	0.917	INTRON CR44320
3R	24581578	3R_24581578_SNP [dm3] 3R_28755856_SNP [dm6]	C	T	4.215e^-4	0.917	DOWNSTREAM CG9997 INTRON CG9997
3R	24655866	3R_24655866_SNP [dm3] 3R_28830144_SNP [dm6]	G	C	4.215e^-4	0.917	INTRON WASp
3R	24655870	3R_24655870_SNP [dm3] 3R_28830148_SNP [dm6]	G	A	4.215e^-4	0.917	INTRON WASp
X	16026499	X_16026499_SNP [dm3] X_16132466_SNP [dm6]	C	T	4.215e^-4	0.917	INTRON disco-r
X	17625136	X_17625136_SNP [dm3] X_17731103_SNP [dm6]	T	G	4.215e^-4	0.917	INTRON CG42684
2R	15695644	2R_15695644_SNP [dm3] 2R_19808139_SNP [dm6]	G	T	4.219e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11103918	3L_11103918_SNP [dm3] 3L_11110818_SNP [dm6]	T	C	4.219e^-4	0.917	INTRON CG7638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4856735	2R_4856735_SNP [dm3] 2R_8969230_SNP [dm6]	A	G	4.221e^-4	0.917	DOWNSTREAM CG8213 INTERGENIC
3L	14958604	3L_14958604_SNP [dm3] 3L_14965504_SNP [dm6]	G	C	4.237e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958612	3L_14958612_SNP [dm3] 3L_14965512_SNP [dm6]	T	A	4.237e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958629	3L_14958629_SNP [dm3] 3L_14965529_SNP [dm6]	C	T	4.237e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958695	3L_14958695_SNP [dm3] 3L_14965595_SNP [dm6]	A	G	4.237e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	17692045	X_17692045_SNP [dm3] X_17798012_SNP [dm6]	G	T	4.243e^-4	0.917	INTRON OdsH
3L	14958483	3L_14958483_SNP [dm3] 3L_14965383_SNP [dm6]	C	T	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958488	3L_14958488_SNP [dm3] 3L_14965388_SNP [dm6]	G	C	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958492	3L_14958492_SNP [dm3] 3L_14965392_SNP [dm6]	G	C	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958505	3L_14958505_SNP [dm3] 3L_14965405_SNP [dm6]	C	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958511	3L_14958511_SNP [dm3] 3L_14965411_SNP [dm6]	T	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958529	3L_14958529_SNP [dm3] 3L_14965429_SNP [dm6]	C	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958533	3L_14958533_SNP [dm3] 3L_14965433_SNP [dm6]	C	T	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958534	3L_14958534_SNP [dm3] 3L_14965434_SNP [dm6]	A	T	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958537	3L_14958537_SNP [dm3] 3L_14965437_SNP [dm6]	C	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958559	3L_14958559_DEL [dm3] 3L_14965459_DEL [dm6]	TATAA	C	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958572	3L_14958572_MNP [dm3] 3L_14965472_MNP [dm6]	AGAG	TCGA	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958591	3L_14958591_SNP [dm3] 3L_14965491_SNP [dm6]	G	T	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958599	3L_14958599_SNP [dm3] 3L_14965499_SNP [dm6]	G	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958638	3L_14958638_SNP [dm3] 3L_14965538_SNP [dm6]	C	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958647	3L_14958647_INS [dm3] 3L_14965547_INS [dm6]	A	AATA	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958656	3L_14958656_SNP [dm3] 3L_14965556_SNP [dm6]	C	G	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958661	3L_14958661_SNP [dm3] 3L_14965561_SNP [dm6]	G	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958669	3L_14958669_SNP [dm3] 3L_14965569_SNP [dm6]	C	T	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958724	3L_14958724_SNP [dm3] 3L_14965624_SNP [dm6]	C	A	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958725	3L_14958725_INS [dm3] 3L_14965625_INS [dm6]	A	AA	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958739	3L_14958739_SNP [dm3] 3L_14965639_SNP [dm6]	G	C	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958782	3L_14958782_SNP [dm3] 3L_14965682_SNP [dm6]	C	G	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958786	3L_14958786_SNP [dm3] 3L_14965686_SNP [dm6]	C	G	4.245e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18356505	2R_18356505_SNP [dm3] 2R_22469000_SNP [dm6]	T	C	4.247e^-4	0.917	INTRON CG10384
2R	6082595	2R_6082595_SNP [dm3] 2R_10195090_SNP [dm6]	T	C	4.249e^-4	0.917	INTERGENIC
2R	6082598	2R_6082598_SNP [dm3] 2R_10195093_SNP [dm6]	G	T	4.249e^-4	0.917	INTERGENIC
2R	6082599	2R_6082599_SNP [dm3] 2R_10195094_SNP [dm6]	A	T	4.249e^-4	0.917	INTERGENIC
2L	12798904	2L_12798904_SNP [dm3] 2L_12798904_SNP [dm6]	C	T	4.252e^-4	0.917	INTERGENIC
X	11272842	X_11272842_SNP [dm3] X_11378809_SNP [dm6]	T	C	4.261e^-4	0.917	INTRON dlg1
2L	19416663	2L_19416663_SNP [dm3] 2L_19416663_SNP [dm6]	T	A	4.261e^-4	0.917	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	8412597	2R_8412597_SNP [dm3] 2R_12525092_SNP [dm6]	T	C	4.261e^-4	0.917	INTERGENIC
3L	6896682	3L_6896682_SNP [dm3] 3L_6903582_SNP [dm6]	T	A	4.262e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6896700	3L_6896700_SNP [dm3] 3L_6903600_SNP [dm6]	T	G	4.262e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7466034	2L_7466034_DEL [dm3] 2L_7466034_DEL [dm6]	TA	T	4.266e^-4	0.917	UPSTREAM CG6055 INTERGENIC
X	18085554	X_18085554_SNP [dm3] X_18191521_SNP [dm6]	A	T	4.290e^-4	0.917	INTRON Frq2
2L	20650105	2L_20650105_SNP [dm3] 2L_20650105_SNP [dm6]	G	T	4.297e^-4	0.917	UPSTREAM CG2611 DOWNSTREAM bru & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10795163	2R_10795163_SNP [dm3] 2R_14907658_SNP [dm6]	A	C	4.327e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14048691	3L_14048691_SNP [dm3] 3L_14055591_SNP [dm6]	A	G	4.333e^-4	0.917	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15574584	X_15574584_SNP [dm3] X_15680551_SNP [dm6]	A	C	4.343e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25915628	3R_25915628_DEL [dm3] 3R_30089906_DEL [dm6]	CTCCTCCTCTT...	C	4.352e^-4	0.917	INTRON sima	TF binding site mE1_TFBS_Trl
3L	14281367	3L_14281367_SNP [dm3] 3L_14288267_SNP [dm6]	T	A	4.354e^-4	0.917	INTRON fz	TF binding site mE1_TFBS_HSA
3L	12032802	3L_12032802_SNP [dm3] 3L_12039702_SNP [dm6]	T	A	4.367e^-4	0.917	INTRON rols	TF binding site mE1_TFBS_inv
2R	6292774	2R_6292774_SNP [dm3] 2R_10405269_SNP [dm6]	G	A	4.377e^-4	0.917	INTRON CG42732
3R	25193394	3R_25193394_SNP [dm3] 3R_29367672_SNP [dm6]	G	A	4.399e^-4	0.917	INTERGENIC
2R	19937479	2R_19937479_SNP [dm3] 2R_24049956_SNP [dm6]	G	T	4.402e^-4	0.917	NON_SYNONYMOUS_CODING sei
3L	5316545	3L_5316545_SNP [dm3] 3L_5323445_SNP [dm6]	T	C	4.403e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10812108	3L_10812108_SNP [dm3] 3L_10819008_SNP [dm6]	G	C	4.404e^-4	0.917	INTERGENIC
2L	18250731	2L_18250731_SNP [dm3] 2L_18250731_SNP [dm6]	C	A	4.405e^-4	0.917	UPSTREAM CG43406 INTRON CG42750
2R	5299559	2R_5299559_SNP [dm3] 2R_9412054_SNP [dm6]	A	T	4.411e^-4	0.917	INTRON wun
2L	12798890	2L_12798890_SNP [dm3] 2L_12798890_SNP [dm6]	A	T	4.416e^-4	0.917	INTERGENIC
2L	12798898	2L_12798898_SNP [dm3] 2L_12798898_SNP [dm6]	C	T	4.416e^-4	0.917	INTERGENIC
2L	12798899	2L_12798899_SNP [dm3] 2L_12798899_SNP [dm6]	G	A	4.416e^-4	0.917	INTERGENIC
3R	24028104	3R_24028104_SNP [dm3] 3R_28202382_SNP [dm6]	C	T	4.422e^-4	0.917	INTRON CG34354
3L	15883606	3L_15883606_DEL [dm3] 3L_15890506_DEL [dm6]	TT	T	4.433e^-4	0.917	INTRON pHCl
3L	3023509	3L_3023509_SNP [dm3] 3L_3023509_SNP [dm6]	T	A	4.433e^-4	0.917	DOWNSTREAM aly INTERGENIC
3L	846079	3L_846079_SNP [dm3] 3L_846079_SNP [dm6]	G	C	4.439e^-4	0.917	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18622350	2L_18622350_SNP [dm3] 2L_18622350_SNP [dm6]	G	A	4.466e^-4	0.917	INTRON MESR3
2L	13048832	2L_13048832_SNP [dm3] 2L_13048832_SNP [dm6]	A	T	4.487e^-4	0.917	INTRON CG9932
2L	13048842	2L_13048842_SNP [dm3] 2L_13048842_SNP [dm6]	T	C	4.487e^-4	0.917	INTRON CG9932
2L	13048912	2L_13048912_SNP [dm3] 2L_13048912_SNP [dm6]	A	T	4.487e^-4	0.917	INTRON CG9932
2L	13048983	2L_13048983_SNP [dm3] 2L_13048983_SNP [dm6]	A	G	4.487e^-4	0.917	INTRON CG9932
2L	13049304	2L_13049304_SNP [dm3] 2L_13049304_SNP [dm6]	T	C	4.487e^-4	0.917	INTRON CG9932
X	5976362	X_5976362_SNP [dm3] X_6082329_SNP [dm6]	C	T	4.501e^-4	0.917	UPSTREAM CG4660 DOWNSTREAM raptor & 1 other INTERGENIC
3L	12623391	3L_12623391_SNP [dm3] 3L_12630291_SNP [dm6]	A	C	4.505e^-4	0.917	INTRON CR32111
2R	10990129	2R_10990129_SNP [dm3] 2R_15102624_SNP [dm6]	G	T	4.520e^-4	0.917	INTERGENIC
3L	17748458	3L_17748458_SNP [dm3] 3L_17755358_SNP [dm6]	G	A	4.527e^-4	0.917	SYNONYMOUS_CODING Msi INTRON Adgf-A
3R	26165011	3R_26165011_DEL [dm3] 3R_30339289_DEL [dm6]	TTAT	T	4.532e^-4	0.917	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11669559	3L_11669559_SNP [dm3] 3L_11676459_SNP [dm6]	T	G	4.536e^-4	0.917	INTRON CG32085
3R	25915654	3R_25915654_SNP [dm3] 3R_30089932_SNP [dm6]	A	C	4.559e^-4	0.917	INTRON sima	TF binding site mE1_TFBS_Trl
X	13129066	X_13129066_SNP [dm3] X_13235033_SNP [dm6]	A	T	4.573e^-4	0.917	DOWNSTREAM CG32639 INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	18182463	2R_18182463_SNP [dm3] 2R_22294958_SNP [dm6]	T	C	4.582e^-4	0.917	SYNONYMOUS_CODING CG5819
2R	18182478	2R_18182478_SNP [dm3] 2R_22294973_SNP [dm6]	G	A	4.582e^-4	0.917	SYNONYMOUS_CODING CG5819
3L	9382794	3L_9382794_SNP [dm3] 3L_9389694_SNP [dm6]	T	A	4.586e^-4	0.917	INTRON CG4080
X	15574549	X_15574549_SNP [dm3] X_15680516_SNP [dm6]	A	C	4.605e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15574558	X_15574558_SNP [dm3] X_15680525_SNP [dm6]	G	A	4.605e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15574563	X_15574563_DEL [dm3] X_15680530_DEL [dm6]	TTAACATACCAACAATGA...	T	4.605e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1089984	X_1089984_SNP [dm3] X_1195951_SNP [dm6]	C	G	4.606e^-4	0.917	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad
2R	17835484	2R_17835484_SNP [dm3] 2R_21947979_SNP [dm6]	C	A	4.611e^-4	0.917	INTERGENIC
3L	19314444	3L_19314444_SNP [dm3] 3L_19321344_SNP [dm6]	A	G	4.629e^-4	0.917	INTRON pip
2R	9363835	2R_9363835_SNP [dm3] 2R_13476330_SNP [dm6]	C	A	4.639e^-4	0.917	INTRON arr
2R	19901018	2R_19901018_SNP [dm3] 2R_24013495_SNP [dm6]	C	A	4.642e^-4	0.917	INTRON Unc-89
2L	8268530	2L_8268530_SNP [dm3] 2L_8268530_SNP [dm6]	A	G	4.666e^-4	0.917	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27701942	3R_27701942_SNP [dm3] 3R_31876220_SNP [dm6]	T	C	4.684e^-4	0.917	INTRON heph
3L	14760910	3L_14760910_SNP [dm3] 3L_14767810_SNP [dm6]	T	A	4.692e^-4	0.917	NON_SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
3L	999997	3L_999997_SNP [dm3] 3L_999997_SNP [dm6]	C	G	4.708e^-4	0.917	INTRON trio
3R	24892905	3R_24892905_SNP [dm3] 3R_29067183_SNP [dm6]	G	A	4.713e^-4	0.917	INTRON CG11873
2R	15410227	2R_15410227_SNP [dm3] 2R_19522722_SNP [dm6]	A	G	4.713e^-4	0.917	UTR_3_PRIME sm
3L	2195651	3L_2195651_SNP [dm3] 3L_2195651_SNP [dm6]	G	A	4.723e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6505151	2L_6505151_SNP [dm3] 2L_6505151_SNP [dm6]	A	G	4.727e^-4	0.917	INTRON CG31637
3L	12067576	3L_12067576_SNP [dm3] 3L_12074476_SNP [dm6]	C	T	4.766e^-4	0.917	INTRON Sema-5c
3R	25825013	3R_25825013_SNP [dm3] 3R_29999291_SNP [dm6]	T	C	4.796e^-4	0.917	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9322961	2R_9322961_SNP [dm3] 2R_13435456_SNP [dm6]	A	G	4.818e^-4	0.917	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3L	13114975	3L_13114975_SNP [dm3] 3L_13121875_SNP [dm6]	A	G	4.826e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20637012	2L_20637012_SNP [dm3] 2L_20637012_SNP [dm6]	T	C	4.829e^-4	0.917	INTERGENIC	transposable element FlyBase
2L	20645564	2L_20645564_SNP [dm3] 2L_20645564_SNP [dm6]	A	T	4.829e^-4	0.917	UPSTREAM CG2608 & 1 other INTRON phr6-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20654288	2L_20654288_SNP [dm3] 2L_20654288_SNP [dm6]	C	T	4.829e^-4	0.917	SYNONYMOUS_CODING bru	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	20658748	2L_20658748_SNP [dm3] 2L_20658748_SNP [dm6]	C	T	4.829e^-4	0.917	SYNONYMOUS_CODING CG2614 DOWNSTREAM CG31678
2L	20661659	2L_20661659_SNP [dm3] 2L_20661659_SNP [dm6]	T	C	4.829e^-4	0.917	INTRON CG31678
2L	20668706	2L_20668706_SNP [dm3] 2L_20668706_SNP [dm6]	A	T	4.829e^-4	0.917	UPSTREAM CG31678 DOWNSTREAM CR45004 INTRON CG31678	TF binding site mE1_TFBS_HSA
2L	20668950	2L_20668950_SNP [dm3] 2L_20668950_SNP [dm6]	G	A	4.829e^-4	0.917	UPSTREAM CG31678 DOWNSTREAM CR45004 INTRON CG31678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20672521	2L_20672521_SNP [dm3] 2L_20672521_SNP [dm6]	T	C	4.829e^-4	0.917	INTRON CG31678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3530575	3L_3530575_SNP [dm3] 3L_3530575_SNP [dm6]	A	C	4.852e^-4	0.917	INTRON Eip63E
2R	16540073	2R_16540073_SNP [dm3] 2R_20652568_SNP [dm6]	C	T	4.876e^-4	0.917	UTR_3_PRIME CG16799 DOWNSTREAM CG16799 INTRON Lrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	16540086	2R_16540086_SNP [dm3] 2R_20652581_SNP [dm6]	T	A	4.876e^-4	0.917	UTR_3_PRIME CG16799 DOWNSTREAM CG16799 INTRON Lrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	11669552	3L_11669552_SNP [dm3] 3L_11676452_SNP [dm6]	G	C	4.876e^-4	0.917	INTRON CG32085
3L	11669555	3L_11669555_SNP [dm3] 3L_11676455_SNP [dm6]	A	G	4.876e^-4	0.917	INTRON CG32085
3L	11669557	3L_11669557_SNP [dm3] 3L_11676457_SNP [dm6]	G	A	4.876e^-4	0.917	INTRON CG32085
X	11279067	X_11279067_SNP [dm3] X_11385034_SNP [dm6]	A	T	4.880e^-4	0.917	INTRON dlg1
3R	25927392	3R_25927392_SNP [dm3] 3R_30101670_SNP [dm6]	A	T	4.890e^-4	0.917	INTRON sima
3R	25927436	3R_25927436_SNP [dm3] 3R_30101714_SNP [dm6]	G	C	4.890e^-4	0.917	INTRON sima
X	13818209	X_13818209_SNP [dm3] X_13924176_SNP [dm6]	T	C	4.891e^-4	0.917	INTRON mamo
2L	8195586	2L_8195586_SNP [dm3] 2L_8195586_SNP [dm6]	T	C	4.902e^-4	0.917	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_sens
2L	8195603	2L_8195603_SNP [dm3] 2L_8195603_SNP [dm6]	C	T	4.902e^-4	0.917	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8195609	2L_8195609_SNP [dm3] 2L_8195609_SNP [dm6]	G	A	4.902e^-4	0.917	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3450853	2L_3450853_SNP [dm3] 2L_3450853_SNP [dm6]	G	A	4.906e^-4	0.917	SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7256684	3L_7256684_SNP [dm3] 3L_7263584_SNP [dm6]	A	C	4.907e^-4	0.917	INTRON CG14830
3L	7256689	3L_7256689_SNP [dm3] 3L_7263589_SNP [dm6]	C	T	4.907e^-4	0.917	INTRON CG14830
3R	19283364	3R_19283364_SNP [dm3] 3R_23457642_SNP [dm6]	G	C	4.907e^-4	0.917	INTRON CG4374	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21697102	3R_21697102_SNP [dm3] 3R_25871380_SNP [dm6]	C	A	4.907e^-4	0.917	UTR_3_PRIME CG5890
3R	25926073	3R_25926073_SNP [dm3] 3R_30100351_SNP [dm6]	A	T	4.907e^-4	0.917	INTRON sima	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25927156	3R_25927156_SNP [dm3] 3R_30101434_SNP [dm6]	T	C	4.907e^-4	0.917	INTRON sima
2R	12912145	2R_12912145_SNP [dm3] 2R_17024640_SNP [dm6]	A	C	4.917e^-4	0.917	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390	TF binding site mE1_TFBS_sens
X	5704094	X_5704094_SNP [dm3] X_5810061_SNP [dm6]	T	C	4.928e^-4	0.917	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
X	5704180	X_5704180_SNP [dm3] X_5810147_SNP [dm6]	A	G	4.928e^-4	0.917	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
X	2895885	X_2895885_SNP [dm3] X_3001852_SNP [dm6]	C	T	4.955e^-4	0.917	INTRON kirre
3R	21652657	3R_21652657_SNP [dm3] 3R_25826935_SNP [dm6]	G	T	4.959e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21652666	3R_21652666_SNP [dm3] 3R_25826944_SNP [dm6]	T	G	4.959e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9549264	2R_9549264_SNP [dm3] 2R_13661759_SNP [dm6]	A	G	4.975e^-4	0.917	SYNONYMOUS_CODING CG6209 INTRON fas	TF binding site BDTNP1_TFBS_hb
3R	6821059	3R_6821059_DEL [dm3] 3R_10995337_DEL [dm6]	TAT	T	4.997e^-4	0.917	INTRON CG34114
3L	2166648	3L_2166648_SNP [dm3] 3L_2166648_SNP [dm6]	T	G	5.023e^-4	0.917	DOWNSTREAM CG15879 INTERGENIC
2L	3846185	2L_3846185_SNP [dm3] 2L_3846185_SNP [dm6]	C	T	5.027e^-4	0.917	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6331696	2R_6331696_SNP [dm3] 2R_10444191_SNP [dm6]	G	T	5.052e^-4	0.917	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9764872	3L_9764872_SNP [dm3] 3L_9771772_SNP [dm6]	G	A	5.059e^-4	0.917	UTR_5_PRIME CG8177 INTRON CG8177
3L	14958460	3L_14958460_SNP [dm3] 3L_14965360_SNP [dm6]	C	A	5.059e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13049214	2L_13049214_DEL [dm3] 2L_13049214_DEL [dm6]	GT	G	5.066e^-4	0.917	INTRON CG9932
3R	20892205	3R_20892205_SNP [dm3] 3R_25066483_SNP [dm6]	C	T	5.083e^-4	0.917	SYNONYMOUS_CODING PQBP1 UPSTREAM veli DOWNSTREAM OstStt3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10577798	3L_10577798_SNP [dm3] 3L_10584698_SNP [dm6]	A	G	5.094e^-4	0.917	INTRON A2bp1
3R	27170687	3R_27170687_SNP [dm3] 3R_31344965_SNP [dm6]	A	C	5.098e^-4	0.917	INTRON CG34347
3R	22026905	3R_22026905_SNP [dm3] 3R_26201183_SNP [dm6]	G	T	5.100e^-4	0.917	INTRON CR44320
3R	14574026	3R_14574026_SNP [dm3] 3R_18748304_SNP [dm6]	A	C	5.117e^-4	0.917	INTRON gwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14154558	3L_14154558_SNP [dm3] 3L_14161458_SNP [dm6]	G	A	5.133e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
3L	14154591	3L_14154591_SNP [dm3] 3L_14161491_SNP [dm6]	A	T	5.133e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
2L	9186500	2L_9186500_SNP [dm3] 2L_9186500_SNP [dm6]	G	A	5.147e^-4	0.917	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3029489	3L_3029489_SNP [dm3] 3L_3029489_SNP [dm6]	G	A	5.161e^-4	0.917	INTERGENIC
3L	12346092	3L_12346092_SNP [dm3] 3L_12352992_SNP [dm6]	G	C	5.172e^-4	0.917	INTERGENIC
3L	12346105	3L_12346105_SNP [dm3] 3L_12353005_SNP [dm6]	T	C	5.172e^-4	0.917	INTERGENIC
X	13041242	X_13041242_SNP [dm3] X_13147209_SNP [dm6]	A	G	5.176e^-4	0.917	INTRON CG32645
X	11741264	X_11741264_SNP [dm3] X_11847231_SNP [dm6]	T	C	5.186e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11741314	X_11741314_SNP [dm3] X_11847281_SNP [dm6]	A	C	5.186e^-4	0.917	INTERGENIC
2L	17183081	2L_17183081_SNP [dm3] 2L_17183081_SNP [dm6]	G	A	5.190e^-4	0.917	SYNONYMOUS_CODING CG31750
3R	14908136	3R_14908136_SNP [dm3] 3R_19082414_SNP [dm6]	A	T	5.195e^-4	0.917	INTRON cdi
3R	18536272	3R_18536272_SNP [dm3] 3R_22710550_SNP [dm6]	C	T	5.203e^-4	0.917	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3R	21652654	3R_21652654_SNP [dm3] 3R_25826932_SNP [dm6]	A	C	5.223e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6954561	3L_6954561_SNP [dm3] 3L_6961461_SNP [dm6]	A	C	5.224e^-4	0.917	INTRON sgl
2L	8910771	2L_8910771_SNP [dm3] 2L_8910771_SNP [dm6]	T	C	5.225e^-4	0.917	INTRON CG34398
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	5.231e^-4	0.917	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15574392	X_15574392_SNP [dm3] X_15680359_SNP [dm6]	T	C	5.234e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27172479	3R_27172479_SNP [dm3] 3R_31346757_SNP [dm6]	T	C	5.248e^-4	0.917	INTRON CG34347
3L	11625989	3L_11625989_SNP [dm3] 3L_11632889_SNP [dm6]	C	G	5.270e^-4	0.917	INTRON CG32091 EXON CR45158
2L	20640694	2L_20640694_SNP [dm3] 2L_20640694_SNP [dm6]	A	C	5.277e^-4	0.917	UTR_3_PRIME CG31680 UPSTREAM Sfp38D
3L	16425624	3L_16425624_SNP [dm3] 3L_16432524_SNP [dm6]	G	A	5.283e^-4	0.917	INTRON CG33158 & 1 other
2L	4619392	2L_4619392_INS [dm3] 2L_4619392_INS [dm6]	A	ATTGTA	5.289e^-4	0.917	UPSTREAM CR44609 INTERGENIC
3L	5686210	3L_5686210_INS [dm3] 3L_5693110_INS [dm6]	T	TTT	5.319e^-4	0.917	INTRON sif
3R	9034297	3R_9034297_SNP [dm3] 3R_13208575_SNP [dm6]	C	G	5.324e^-4	0.917	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10230622	3L_10230622_SNP [dm3] 3L_10237522_SNP [dm6]	A	T	5.325e^-4	0.917	DOWNSTREAM CR44542 INTERGENIC
3L	6093982	3L_6093982_SNP [dm3] 3L_6100882_SNP [dm6]	T	C	5.339e^-4	0.917	INTRON Ets65A
2R	14595128	2R_14595128_SNP [dm3] 2R_18707623_SNP [dm6]	T	C	5.344e^-4	0.917	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
3R	24367553	3R_24367553_SNP [dm3] 3R_28541831_SNP [dm6]	A	G	5.344e^-4	0.917	DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	24368538	3R_24368538_SNP [dm3] 3R_28542816_SNP [dm6]	G	C	5.344e^-4	0.917	NON_SYNONYMOUS_CODING CG12413	TF binding site mE1_TFBS_chinmo
X	18085964	X_18085964_DEL [dm3] X_18191931_DEL [dm6]	AC	A	5.344e^-4	0.917	INTRON Frq2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	5.348e^-4	0.917	INTRON CG34347
X	15574503	X_15574503_SNP [dm3] X_15680470_SNP [dm6]	T	A	5.349e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11969578	3L_11969578_SNP [dm3] 3L_11976478_SNP [dm6]	T	C	5.362e^-4	0.917	SYNONYMOUS_CODING CG43896 DOWNSTREAM CG14125	TF binding site mE1_TFBS_chinmo
3L	11969658	3L_11969658_SNP [dm3] 3L_11976558_SNP [dm6]	A	G	5.362e^-4	0.917	DOWNSTREAM CG14125 INTRON CG43896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20098319	2R_20098319_SNP [dm3] 2R_24210796_SNP [dm6]	C	T	5.382e^-4	0.917	INTERGENIC
2R	16528382	2R_16528382_SNP [dm3] 2R_20640877_SNP [dm6]	T	C	5.401e^-4	0.917	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	16528386	2R_16528386_SNP [dm3] 2R_20640881_SNP [dm6]	G	A	5.401e^-4	0.917	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	16528406	2R_16528406_SNP [dm3] 2R_20640901_SNP [dm6]	A	T	5.401e^-4	0.917	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	11747382	X_11747382_SNP [dm3] X_11853349_SNP [dm6]	A	G	5.416e^-4	0.917	UPSTREAM p24-1 INTRON CG10347	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	11747390	X_11747390_SNP [dm3] X_11853357_SNP [dm6]	G	T	5.416e^-4	0.917	UPSTREAM p24-1 INTRON CG10347	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	11117559	X_11117559_SNP [dm3] X_11223526_SNP [dm6]	A	T	5.430e^-4	0.917	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2R	10224312	2R_10224312_SNP [dm3] 2R_14336807_SNP [dm6]	C	G	5.449e^-4	0.917	INTRON Shroom	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	908235	3L_908235_SNP [dm3] 3L_908235_SNP [dm6]	G	A	5.453e^-4	0.917	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3867569	3L_3867569_SNP [dm3] 3L_3867569_SNP [dm6]	C	T	5.453e^-4	0.917	INTERGENIC
2R	6707055	2R_6707055_SNP [dm3] 2R_10819550_SNP [dm6]	G	A	5.460e^-4	0.917	UTR_5_PRIME dgo UPSTREAM Prosbeta5 INTRON dgo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6896681	3L_6896681_SNP [dm3] 3L_6903581_SNP [dm6]	T	A	5.469e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6896721	3L_6896721_SNP [dm3] 3L_6903621_SNP [dm6]	T	C	5.469e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19095459	2L_19095459_SNP [dm3] 2L_19095459_SNP [dm6]	C	T	5.476e^-4	0.917	INTRON Lim3	TF binding site mE1_TFBS_cad
X	607456	X_607456_SNP [dm3] X_713423_SNP [dm6]	T	C	5.476e^-4	0.917	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3211751	X_3211751_SNP [dm3] X_3317718_SNP [dm6]	G	A	5.499e^-4	0.917	INTRON dnc & 1 other
3L	9868439	3L_9868439_INS [dm3] 3L_9875339_INS [dm6]	T	TGAAGCA	5.501e^-4	0.917	UPSTREAM CR45406 INTERGENIC
2R	18356508	2R_18356508_SNP [dm3] 2R_22469003_SNP [dm6]	T	C	5.507e^-4	0.917	INTRON CG10384
3R	16788353	3R_16788353_MNP [dm3] 3R_20962631_MNP [dm6]	ATA	TAT	5.560e^-4	0.917	INTRON Atpalpha
3L	14093265	3L_14093265_SNP [dm3] 3L_14100165_SNP [dm6]	T	C	5.562e^-4	0.917	INTERGENIC
3R	16811180	3R_16811180_SNP [dm3] 3R_20985458_SNP [dm6]	A	T	5.581e^-4	0.917	UPSTREAM Calx INTRON Calx
2R	20342413	2R_20342413_SNP [dm3] 2R_24454890_SNP [dm6]	C	T	5.589e^-4	0.917	UPSTREAM CG13579 INTERGENIC
3L	5195492	3L_5195492_SNP [dm3] 3L_5202392_SNP [dm6]	G	C	5.592e^-4	0.917	UPSTREAM shep INTRON shep
3R	9749035	3R_9749035_SNP [dm3] 3R_13923313_SNP [dm6]	G	C	5.595e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14742985	3L_14742985_SNP [dm3] 3L_14749885_SNP [dm6]	A	G	5.601e^-4	0.917	DOWNSTREAM Trl INTRON Trl & 1 other
2R	9834326	2R_9834326_SNP [dm3] 2R_13946821_SNP [dm6]	A	G	5.606e^-4	0.917	UTR_3_PRIME AGO1 DOWNSTREAM AGO1
2R	15479141	2R_15479141_SNP [dm3] 2R_19591636_SNP [dm6]	T	C	5.607e^-4	0.917	INTRON sm
2R	9241488	2R_9241488_SNP [dm3] 2R_13353983_SNP [dm6]	G	C	5.612e^-4	0.917	INTRON CR44206 & 1 other
2R	8584156	2R_8584156_SNP [dm3] 2R_12696651_SNP [dm6]	C	G	5.650e^-4	0.917	INTERGENIC
2R	8584157	2R_8584157_SNP [dm3] 2R_12696652_SNP [dm6]	G	A	5.650e^-4	0.917	INTERGENIC
2R	8584159	2R_8584159_SNP [dm3] 2R_12696654_SNP [dm6]	A	G	5.650e^-4	0.917	INTERGENIC
3L	14972183	3L_14972183_SNP [dm3] 3L_14979083_SNP [dm6]	G	A	5.656e^-4	0.917	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	3846232	2L_3846232_SNP [dm3] 2L_3846232_SNP [dm6]	A	T	5.658e^-4	0.917	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19515496	3L_19515496_SNP [dm3] 3L_19522396_SNP [dm6]	G	A	5.664e^-4	0.917	INTRON Cpr76Bc
2R	12312951	2R_12312951_SNP [dm3] 2R_16425446_SNP [dm6]	C	T	5.692e^-4	0.917	INTRON Sema-2b
3L	11182721	3L_11182721_SNP [dm3] 3L_11189621_SNP [dm6]	T	A	5.693e^-4	0.917	INTRON GlcAT-P
2L	10258476	2L_10258476_SNP [dm3] 2L_10258476_SNP [dm6]	C	T	5.699e^-4	0.917	INTRON Pten
2L	10258477	2L_10258477_SNP [dm3] 2L_10258477_SNP [dm6]	G	A	5.699e^-4	0.917	INTRON Pten
X	6247863	X_6247863_SNP [dm3] X_6353830_SNP [dm6]	T	A	5.699e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	6247864	X_6247864_SNP [dm3] X_6353831_SNP [dm6]	G	T	5.699e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	6248712	X_6248712_SNP [dm3] X_6354679_SNP [dm6]	T	C	5.699e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6248795	X_6248795_SNP [dm3] X_6354762_SNP [dm6]	C	T	5.699e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6248860	X_6248860_SNP [dm3] X_6354827_SNP [dm6]	T	C	5.699e^-4	0.917	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
3L	12045376	3L_12045376_SNP [dm3] 3L_12052276_SNP [dm6]	T	C	5.712e^-4	0.917	INTRON rols
2L	16801269	2L_16801269_SNP [dm3] 2L_16801269_SNP [dm6]	T	G	5.721e^-4	0.917	SYNONYMOUS_CODING Ugt36Bc DOWNSTREAM CG13280	TF binding site mE1_TFBS_cad
3L	12312373	3L_12312373_SNP [dm3] 3L_12319273_SNP [dm6]	C	A	5.724e^-4	0.917	INTERGENIC
3R	22515437	3R_22515437_SNP [dm3] 3R_26689715_SNP [dm6]	T	G	5.725e^-4	0.917	INTERGENIC
3R	24655881	3R_24655881_SNP [dm3] 3R_28830159_SNP [dm6]	G	A	5.753e^-4	0.917	INTRON WASp
3L	9305050	3L_9305050_DEL [dm3] 3L_9311950_DEL [dm6]	GTGACGCTCTG...	G	5.774e^-4	0.917	INTERGENIC
2L	13358759	2L_13358759_SNP [dm3] 2L_13358759_SNP [dm6]	C	T	5.777e^-4	0.917	INTERGENIC
2L	13358770	2L_13358770_SNP [dm3] 2L_13358770_SNP [dm6]	T	C	5.777e^-4	0.917	INTERGENIC
3R	14604281	3R_14604281_SNP [dm3] 3R_18778559_SNP [dm6]	G	A	5.782e^-4	0.917	INTRON CG7720
2L	9340930	2L_9340930_SNP [dm3] 2L_9340930_SNP [dm6]	A	G	5.782e^-4	0.917	UTR_3_PRIME Eaat1	TF binding site mE1_TFBS_cad
3L	15312944	3L_15312944_SNP [dm3] 3L_15319844_SNP [dm6]	T	C	5.799e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12401446	3R_12401446_SNP [dm3] 3R_16575724_SNP [dm6]	T	C	5.804e^-4	0.917	INTRON Scp2	TF binding site mE1_TFBS_cad
X	2993106	X_2993106_SNP [dm3] X_3099073_SNP [dm6]	G	A	5.812e^-4	0.917	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12132448	2R_12132448_SNP [dm3] 2R_16244943_SNP [dm6]	A	G	5.824e^-4	0.917	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17273373	2R_17273373_SNP [dm3] 2R_21385868_SNP [dm6]	G	A	5.841e^-4	0.917	UPSTREAM Acox57D-p INTRON EfSec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5924693	3L_5924693_SNP [dm3] 3L_5931593_SNP [dm6]	T	A	5.846e^-4	0.917	INTRON Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	6216351	2R_6216351_SNP [dm3] 2R_10328846_SNP [dm6]	C	T	5.847e^-4	0.917	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17779436	3L_17779436_SNP [dm3] 3L_17786336_SNP [dm6]	A	C	5.850e^-4	0.917	INTERGENIC
2R	14200237	2R_14200237_SNP [dm3] 2R_18312732_SNP [dm6]	T	A	5.851e^-4	0.917	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5451313	2L_5451313_SNP [dm3] 2L_5451313_SNP [dm6]	T	C	5.882e^-4	0.917	INTERGENIC
3L	978539	3L_978539_SNP [dm3] 3L_978539_SNP [dm6]	T	C	5.884e^-4	0.917	INTRON Glut1
3L	19515309	3L_19515309_SNP [dm3] 3L_19522209_SNP [dm6]	A	G	5.909e^-4	0.917	INTRON Cpr76Bc
3L	2882246	3L_2882246_SNP [dm3] 3L_2882246_SNP [dm6]	C	A	5.912e^-4	0.917	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	2882249	3L_2882249_SNP [dm3] 3L_2882249_SNP [dm6]	T	A	5.912e^-4	0.917	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	13165403	2R_13165403_INS [dm3] 2R_17277898_INS [dm6]	G	GG	5.929e^-4	0.917	INTRON mbl
2R	14598019	2R_14598019_SNP [dm3] 2R_18710514_SNP [dm6]	T	C	5.945e^-4	0.917	SYNONYMOUS_CODING CG15087 UPSTREAM pncr016:2R	TF binding site BDTNP1_TFBS_dl
3L	6066110	3L_6066110_SNP [dm3] 3L_6073010_SNP [dm6]	G	A	5.945e^-4	0.917	SYNONYMOUS_CODING CG6602 DOWNSTREAM CG13295
3L	6066120	3L_6066120_SNP [dm3] 3L_6073020_SNP [dm6]	G	C	5.945e^-4	0.917	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG13295
3L	12563332	3L_12563332_DEL [dm3] 3L_12570232_DEL [dm6]	AA	A	5.947e^-4	0.917	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5854043	2R_5854043_SNP [dm3] 2R_9966538_SNP [dm6]	A	T	5.968e^-4	0.917	UPSTREAM CG12133 INTERGENIC
3L	1853324	3L_1853324_SNP [dm3] 3L_1853324_SNP [dm6]	C	T	5.975e^-4	0.917	INTRON CG13936
2R	9664018	2R_9664018_SNP [dm3] 2R_13776513_SNP [dm6]	T	G	5.979e^-4	0.917	INTRON Cpr50Ca	TF binding site mE1_TFBS_cad
3L	5898772	3L_5898772_SNP [dm3] 3L_5905672_SNP [dm6]	G	C	5.994e^-4	0.917	NON_SYNONYMOUS_CODING CG10486 INTRON CG10486
3R	11772645	3R_11772645_SNP [dm3] 3R_15946923_SNP [dm6]	G	A	5.995e^-4	0.917	INTRON Sap47
3R	18967135	3R_18967135_SNP [dm3] 3R_23141413_SNP [dm6]	C	T	5.996e^-4	0.917	NON_SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14760912	3L_14760912_SNP [dm3] 3L_14767812_SNP [dm6]	G	A	6.009e^-4	0.917	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
2R	1378679	2R_1378679_SNP [dm3] 2R_5491174_SNP [dm6]	G	T	6.014e^-4	0.917	INTRON CG30440
X	16977892	X_16977892_SNP [dm3] X_17083859_SNP [dm6]	G	A	6.021e^-4	0.917	SYNONYMOUS_CODING CG8945 DOWNSTREAM CG4955
2R	5612038	2R_5612038_SNP [dm3] 2R_9724533_SNP [dm6]	C	G	6.048e^-4	0.917	INTRON sqa
3R	21829685	3R_21829685_SNP [dm3] 3R_26003963_SNP [dm6]	A	T	6.060e^-4	0.917	UPSTREAM CR45038 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21833089	3R_21833089_SNP [dm3] 3R_26007367_SNP [dm6]	T	A	6.060e^-4	0.917	UPSTREAM CR45039 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21833467	3R_21833467_SNP [dm3] 3R_26007745_SNP [dm6]	A	G	6.060e^-4	0.917	UPSTREAM CR45039 INTERGENIC
3R	21834032	3R_21834032_SNP [dm3] 3R_26008310_SNP [dm6]	C	T	6.060e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21834148	3R_21834148_SNP [dm3] 3R_26008426_SNP [dm6]	G	T	6.060e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21836334	3R_21836334_SNP [dm3] 3R_26010612_SNP [dm6]	C	T	6.060e^-4	0.917	UPSTREAM E_spl_malpha-BFM INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	22426112	3L_22426112_SNP [dm3] 3L_22433012_SNP [dm6]	T	C	6.080e^-4	0.917	INTERGENIC
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	6.087e^-4	0.917	INTERGENIC
2L	5934895	2L_5934895_SNP [dm3] 2L_5934895_SNP [dm6]	C	T	6.093e^-4	0.917	INTRON dsf	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26078982	3R_26078982_SNP [dm3] 3R_30253260_SNP [dm6]	T	C	6.116e^-4	0.917	SYNONYMOUS_CODING CG18404 DOWNSTREAM CG9682	TF binding site mE1_TFBS_HSA
3L	2195349	3L_2195349_SNP [dm3] 3L_2195349_SNP [dm6]	T	C	6.128e^-4	0.917	INTERGENIC
3L	813718	3L_813718_SNP [dm3] 3L_813718_SNP [dm6]	G	A	6.130e^-4	0.917	EXON CR44537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15839573	2R_15839573_SNP [dm3] 2R_19952068_SNP [dm6]	G	A	6.130e^-4	0.917	DOWNSTREAM CG10822 INTERGENIC
3R	24495618	3R_24495618_SNP [dm3] 3R_28669896_SNP [dm6]	A	G	6.138e^-4	0.917	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3R	24495625	3R_24495625_SNP [dm3] 3R_28669903_SNP [dm6]	T	A	6.138e^-4	0.917	NON_SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2L	17532521	2L_17532521_SNP [dm3] 2L_17532521_SNP [dm6]	C	T	6.151e^-4	0.917	UPSTREAM CG15145 INTERGENIC
2R	11772539	2R_11772539_DEL [dm3] 2R_15885034_DEL [dm6]	TTTAGCTT	T	6.153e^-4	0.917	INTRON sli
3R	14329140	3R_14329140_SNP [dm3] 3R_18503418_SNP [dm6]	T	A	6.176e^-4	0.917	INTRON fru
2R	10795109	2R_10795109_SNP [dm3] 2R_14907604_SNP [dm6]	T	A	6.188e^-4	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5896723	2R_5896723_SNP [dm3] 2R_10009218_SNP [dm6]	C	A	6.205e^-4	0.917	INTRON Pka-R2
2R	12918489	2R_12918489_SNP [dm3] 2R_17030984_SNP [dm6]	T	A	6.208e^-4	0.917	INTRON RhoGEF2
3L	14864818	3L_14864818_SNP [dm3] 3L_14871718_SNP [dm6]	T	C	6.223e^-4	0.917	INTRON CG17839
3L	14958649	3L_14958649_SNP [dm3] 3L_14965549_SNP [dm6]	C	T	6.231e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958723	3L_14958723_SNP [dm3] 3L_14965623_SNP [dm6]	T	C	6.231e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14958763	3L_14958763_SNP [dm3] 3L_14965663_SNP [dm6]	A	T	6.231e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14154590	3L_14154590_SNP [dm3] 3L_14161490_SNP [dm6]	T	A	6.232e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
3L	12401380	3L_12401380_SNP [dm3] 3L_12408280_SNP [dm6]	C	T	6.271e^-4	0.917	UTR_5_PRIME CG32103 INTRON CG32103	TF binding site mE1_TFBS_cad
2L	20671802	2L_20671802_SNP [dm3] 2L_20671802_SNP [dm6]	C	A	6.278e^-4	0.917	INTRON CG31678	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18991774	3R_18991774_DEL [dm3] 3R_23166052_DEL [dm6]	CAAATAAA	T	6.296e^-4	0.917	INTERGENIC
3R	24370747	3R_24370747_SNP [dm3] 3R_28545025_SNP [dm6]	C	A	6.299e^-4	0.917	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	996589	3L_996589_SNP [dm3] 3L_996589_SNP [dm6]	C	T	6.311e^-4	0.917	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other	TF binding site mE1_TFBS_HSA
2R	18333911	2R_18333911_SNP [dm3] 2R_22446406_SNP [dm6]	C	T	6.315e^-4	0.917	INTERGENIC
2R	9460866	2R_9460866_SNP [dm3] 2R_13573361_SNP [dm6]	T	C	6.330e^-4	0.917	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3L	14864665	3L_14864665_SNP [dm3] 3L_14871565_SNP [dm6]	T	G	6.352e^-4	0.917	INTRON CG17839
3R	25587452	3R_25587452_SNP [dm3] 3R_29761730_SNP [dm6]	C	T	6.357e^-4	0.917	INTERGENIC
2R	20234227	2R_20234227_SNP [dm3] 2R_24346704_SNP [dm6]	A	T	6.364e^-4	0.917	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9749012	3R_9749012_SNP [dm3] 3R_13923290_SNP [dm6]	T	C	6.365e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6562834	2R_6562834_SNP [dm3] 2R_10675329_SNP [dm6]	A	C	6.371e^-4	0.917	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3025765	3L_3025765_SNP [dm3] 3L_3025765_SNP [dm6]	G	A	6.372e^-4	0.917	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	8430554	X_8430554_SNP [dm3] X_8536521_SNP [dm6]	T	C	6.385e^-4	0.917	INTRON Nrg
3R	17234159	3R_17234159_SNP [dm3] 3R_21408437_SNP [dm6]	T	C	6.386e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17473013	2R_17473013_SNP [dm3] 2R_21585508_SNP [dm6]	C	A	6.394e^-4	0.917	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11746607	X_11746607_SNP [dm3] X_11852574_SNP [dm6]	G	A	6.396e^-4	0.917	UPSTREAM p24-1 DOWNSTREAM CG10347 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	10626496	2R_10626496_SNP [dm3] 2R_14738991_SNP [dm6]	C	T	6.402e^-4	0.917	DOWNSTREAM CG12858 EXON CR43428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7287638	2L_7287638_SNP [dm3] 2L_7287638_SNP [dm6]	T	C	6.411e^-4	0.917	INTERGENIC
2L	17042952	2L_17042952_SNP [dm3] 2L_17042952_SNP [dm6]	C	A	6.430e^-4	0.917	INTRON CR43802 EXON CR43802
2L	17042953	2L_17042953_SNP [dm3] 2L_17042953_SNP [dm6]	A	G	6.430e^-4	0.917	INTRON CR43802 EXON CR43802
3L	15053503	3L_15053503_SNP [dm3] 3L_15060403_SNP [dm6]	A	G	6.444e^-4	0.917	DOWNSTREAM CG13460 INTRON Sytbeta
3L	11969642	3L_11969642_SNP [dm3] 3L_11976542_SNP [dm6]	C	T	6.449e^-4	0.917	DOWNSTREAM CG14125 INTRON CG43896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12201493	3L_12201493_SNP [dm3] 3L_12208393_SNP [dm6]	T	A	6.456e^-4	0.917	DOWNSTREAM app INTRON app
2L	20638426	2L_20638426_DEL [dm3] 2L_20638426_DEL [dm6]	ATTACTTGGAAAACCGTTTT...	A	6.485e^-4	0.917	UPSTREAM CR43158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	20640992	2L_20640992_SNP [dm3] 2L_20640992_SNP [dm6]	T	C	6.485e^-4	0.917	DOWNSTREAM CG31680 INTRON Sfp38D
2L	20664745	2L_20664745_SNP [dm3] 2L_20664745_SNP [dm6]	C	A	6.485e^-4	0.917	UTR_5_PRIME CG31678 UPSTREAM CR45004 INTRON CG31678
2R	8556916	2R_8556916_SNP [dm3] 2R_12669411_SNP [dm6]	A	C	6.489e^-4	0.917	INTRON nemy
3R	24370643	3R_24370643_SNP [dm3] 3R_28544921_SNP [dm6]	A	T	6.510e^-4	0.917	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	15540648	X_15540648_SNP [dm3] X_15646615_SNP [dm6]	G	A	6.540e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19424013	2L_19424013_SNP [dm3] 2L_19424013_SNP [dm6]	A	C	6.555e^-4	0.917	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	3784790	X_3784790_SNP [dm3] X_3890757_SNP [dm6]	T	C	6.567e^-4	0.917	DOWNSTREAM CG15239 & 1 other INTERGENIC
3R	10891322	3R_10891322_SNP [dm3] 3R_15065600_SNP [dm6]	A	G	6.570e^-4	0.917	INTRON dpr9
2R	16828752	2R_16828752_SNP [dm3] 2R_20941247_SNP [dm6]	A	G	6.572e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25587447	3R_25587447_SNP [dm3] 3R_29761725_SNP [dm6]	T	C	6.587e^-4	0.917	INTERGENIC
2R	13897266	2R_13897266_SNP [dm3] 2R_18009761_SNP [dm6]	G	A	6.600e^-4	0.917	INTERGENIC
2R	15511838	2R_15511838_SNP [dm3] 2R_19624333_SNP [dm6]	C	T	6.601e^-4	0.917	INTRON sm	TF binding site mE1_TFBS_cad
3R	27263998	3R_27263998_SNP [dm3] 3R_31438276_SNP [dm6]	A	G	6.607e^-4	0.917	INTRON Gprk2
2R	4713112	2R_4713112_SNP [dm3] 2R_8825607_SNP [dm6]	T	C	6.635e^-4	0.917	UPSTREAM CG30350 INTRON sns
2R	12912358	2R_12912358_SNP [dm3] 2R_17024853_SNP [dm6]	C	A	6.648e^-4	0.917	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6977935	2R_6977935_SNP [dm3] 2R_11090430_SNP [dm6]	A	G	6.679e^-4	0.917	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19917254	2R_19917254_SNP [dm3] 2R_24029731_SNP [dm6]	C	T	6.687e^-4	0.917	SYNONYMOUS_CODING CG3163 UPSTREAM HSPC300 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	16888404	X_16888404_DEL [dm3] X_16994371_DEL [dm6]	AGAGGTT	A	6.688e^-4	0.917	INTRON CG45002
2R	15056261	2R_15056261_SNP [dm3] 2R_19168756_SNP [dm6]	A	C	6.691e^-4	0.917	INTRON CG10737
3L	8696862	3L_8696862_SNP [dm3] 3L_8703762_SNP [dm6]	G	A	6.732e^-4	0.917	INTERGENIC
3L	8696870	3L_8696870_SNP [dm3] 3L_8703770_SNP [dm6]	G	C	6.732e^-4	0.917	INTERGENIC
3L	8696872	3L_8696872_SNP [dm3] 3L_8703772_SNP [dm6]	C	G	6.732e^-4	0.917	INTERGENIC
3L	6573087	3L_6573087_SNP [dm3] 3L_6579987_SNP [dm6]	C	T	6.736e^-4	0.917	INTRON CG18769 & 1 other
2R	6023388	2R_6023388_SNP [dm3] 2R_10135883_SNP [dm6]	A	G	6.744e^-4	0.917	INTRON gem
3L	18190971	3L_18190971_SNP [dm3] 3L_18197871_SNP [dm6]	A	T	6.747e^-4	0.917	DOWNSTREAM CR45234 INTERGENIC
X	4763743	X_4763743_SNP [dm3] X_4869710_SNP [dm6]	A	T	6.750e^-4	0.917	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12904333	X_12904333_SNP [dm3] X_13010300_SNP [dm6]	G	A	6.752e^-4	0.917	INTRON rad
2L	7449491	2L_7449491_SNP [dm3] 2L_7449491_SNP [dm6]	A	C	6.754e^-4	0.917	UTR_5_PRIME santa-maria INTRON santa-maria
X	20802014	X_20802014_SNP [dm3] X_20930987_SNP [dm6]	T	C	6.772e^-4	0.917	UTR_3_PRIME CG11227
3L	14972201	3L_14972201_SNP [dm3] 3L_14979101_SNP [dm6]	G	A	6.778e^-4	0.917	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	16976888	X_16976888_SNP [dm3] X_17082855_SNP [dm6]	T	C	6.781e^-4	0.917	SYNONYMOUS_CODING CG4955 INTRON CG8945
3L	12261957	3L_12261957_SNP [dm3] 3L_12268857_SNP [dm6]	A	T	6.831e^-4	0.917	NON_SYNONYMOUS_CODING CG32100 DOWNSTREAM Pbgs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12231711	3L_12231711_SNP [dm3] 3L_12238611_SNP [dm6]	A	G	6.863e^-4	0.917	INTRON app
3R	20889561	3R_20889561_SNP [dm3] 3R_25063839_SNP [dm6]	C	T	6.864e^-4	0.917	SYNONYMOUS_CODING Unc-13-4B DOWNSTREAM veli
3L	20078873	3L_20078873_DEL [dm3] 3L_20085773_DEL [dm6]	TA	T	6.878e^-4	0.917	INTRON sNPF-R
2R	14595125	2R_14595125_SNP [dm3] 2R_18707620_SNP [dm6]	G	A	6.884e^-4	0.917	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
3L	4736106	3L_4736106_SNP [dm3] 3L_4736106_SNP [dm6]	T	A	6.885e^-4	0.917	INTRON RhoGEF64C
2L	602481	2L_602481_SNP [dm3] 2L_602481_SNP [dm6]	T	G	6.885e^-4	0.917	UPSTREAM CG13689 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5299769	2R_5299769_DEL [dm3] 2R_9412264_DEL [dm6]	AA	A	6.886e^-4	0.917	INTRON wun
3L	13938433	3L_13938433_SNP [dm3] 3L_13945333_SNP [dm6]	G	T	6.911e^-4	0.917	INTRON CG32137
2R	8406208	2R_8406208_SNP [dm3] 2R_12518703_SNP [dm6]	G	A	6.934e^-4	0.917	SYNONYMOUS_CODING CG8818 UPSTREAM CG8569	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8924183	2L_8924183_SNP [dm3] 2L_8924183_SNP [dm6]	T	C	6.959e^-4	0.917	INTRON CG34398
X	6254943	X_6254943_SNP [dm3] X_6360910_SNP [dm6]	A	G	6.960e^-4	0.917	UTR_3_PRIME kdn DOWNSTREAM swaPsi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5913999	2L_5913999_SNP [dm3] 2L_5913999_SNP [dm6]	T	C	6.968e^-4	0.917	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	11166986	3L_11166986_SNP [dm3] 3L_11173886_SNP [dm6]	C	A	6.969e^-4	0.917	SYNONYMOUS_CODING CG14142	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13730074	3L_13730074_SNP [dm3] 3L_13736974_SNP [dm6]	C	A	6.998e^-4	0.917	INTRON bru-3	TF binding site mE1_TFBS_ftz_f1
3R	22670805	3R_22670805_SNP [dm3] 3R_26845083_SNP [dm6]	C	T	7.006e^-4	0.917	INTRON Lerp
2L	20664280	2L_20664280_SNP [dm3] 2L_20664280_SNP [dm6]	C	G	7.010e^-4	0.917	UPSTREAM CR45004 INTRON CG31678
3L	2195534	3L_2195534_DEL [dm3] 3L_2195534_DEL [dm6]	AAT	A	7.015e^-4	0.917	INTERGENIC
2R	18183353	2R_18183353_SNP [dm3] 2R_22295848_SNP [dm6]	C	T	7.032e^-4	0.917	INTRON CG5819	TF binding site mE1_TFBS_cad
3L	9595047	3L_9595047_SNP [dm3] 3L_9601947_SNP [dm6]	C	A	7.042e^-4	0.917	SYNONYMOUS_CODING CG3306 UPSTREAM CG3088
X	19778485	X_19778485_SNP [dm3] X_19884452_SNP [dm6]	T	C	7.056e^-4	0.917	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	17156753	2L_17156753_SNP [dm3] 2L_17156753_SNP [dm6]	C	T	7.065e^-4	0.917	INTRON beat-IIIa & 1 other
3L	2161132	3L_2161132_SNP [dm3] 3L_2161132_SNP [dm6]	A	G	7.076e^-4	0.917	INTRON CG15822
X	12089220	X_12089220_SNP [dm3] X_12195187_SNP [dm6]	G	A	7.080e^-4	0.917	INTRON Ten-a
2L	15742797	2L_15742797_SNP [dm3] 2L_15742797_SNP [dm6]	G	A	7.103e^-4	0.917	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	10405595	3L_10405595_SNP [dm3] 3L_10412495_SNP [dm6]	C	T	7.110e^-4	0.917	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	10405614	3L_10405614_SNP [dm3] 3L_10412514_SNP [dm6]	C	G	7.110e^-4	0.917	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	1634249	2L_1634249_SNP [dm3] 2L_1634249_SNP [dm6]	T	A	7.119e^-4	0.917	INTERGENIC
3L	14743150	3L_14743150_DEL [dm3] 3L_14750050_DEL [dm6]	AA	A	7.124e^-4	0.917	DOWNSTREAM Trl INTRON Trl & 1 other
2R	9789755	2R_9789755_SNP [dm3] 2R_13902250_SNP [dm6]	G	A	7.142e^-4	0.917	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18474570	3R_18474570_SNP [dm3] 3R_22648848_SNP [dm6]	T	A	7.142e^-4	0.917	INTRON CG45058
3R	18475324	3R_18475324_SNP [dm3] 3R_22649602_SNP [dm6]	T	A	7.142e^-4	0.917	INTRON CG45058
3R	21679286	3R_21679286_SNP [dm3] 3R_25853564_SNP [dm6]	G	A	7.142e^-4	0.917	SYNONYMOUS_CODING CG5886
3R	22032514	3R_22032514_SNP [dm3] 3R_26206792_SNP [dm6]	G	A	7.142e^-4	0.917	INTRON CR44320
3R	22032681	3R_22032681_SNP [dm3] 3R_26206959_SNP [dm6]	G	A	7.142e^-4	0.917	INTRON CR44320
X	10533615	X_10533615_SNP [dm3] X_10639582_SNP [dm6]	T	A	7.142e^-4	0.917	INTRON X11Lbeta
X	10589281	X_10589281_SNP [dm3] X_10695248_SNP [dm6]	C	G	7.142e^-4	0.917	INTRON X11Lbeta
3L	12231857	3L_12231857_DEL [dm3] 3L_12238757_DEL [dm6]	ACGGCTATTTCTA...	A	7.145e^-4	0.917	INTRON app
2R	13314048	2R_13314048_SNP [dm3] 2R_17426543_SNP [dm6]	G	A	7.150e^-4	0.917	SYNONYMOUS_CODING CG6550 DOWNSTREAM l_2_k01209	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23297812	3R_23297812_SNP [dm3] 3R_27472090_SNP [dm6]	T	C	7.170e^-4	0.917	INTERGENIC
3R	24909768	3R_24909768_SNP [dm3] 3R_29084046_SNP [dm6]	T	A	7.170e^-4	0.917	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9664005	2R_9664005_SNP [dm3] 2R_13776500_SNP [dm6]	G	C	7.196e^-4	0.917	INTRON Cpr50Ca	TF binding site mE1_TFBS_cad
2R	9145105	2R_9145105_SNP [dm3] 2R_13257600_SNP [dm6]	T	A	7.206e^-4	0.917	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
3L	1381787	3L_1381787_SNP [dm3] 3L_1381787_SNP [dm6]	C	G	7.217e^-4	0.917	INTRON Ptp61F & 1 other
2R	12918620	2R_12918620_SNP [dm3] 2R_17031115_SNP [dm6]	G	T	7.218e^-4	0.917	INTRON RhoGEF2
3L	7087246	3L_7087246_SNP [dm3] 3L_7094146_SNP [dm6]	A	T	7.220e^-4	0.917	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087269	3L_7087269_SNP [dm3] 3L_7094169_SNP [dm6]	T	G	7.220e^-4	0.917	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_sbb
3L	13556360	3L_13556360_SNP [dm3] 3L_13563260_SNP [dm6]	A	T	7.223e^-4	0.917	INTRON bru-3
3R	22404245	3R_22404245_SNP [dm3] 3R_26578523_SNP [dm6]	C	T	7.228e^-4	0.917	INTRON scrib
3L	12231843	3L_12231843_SNP [dm3] 3L_12238743_SNP [dm6]	T	A	7.229e^-4	0.917	INTRON app
3L	2166168	3L_2166168_SNP [dm3] 3L_2166168_SNP [dm6]	A	C	7.257e^-4	0.917	INTERGENIC
2L	12148960	2L_12148960_SNP [dm3] 2L_12148960_SNP [dm6]	A	T	7.270e^-4	0.917	INTRON CG31760
3R	24876136	3R_24876136_SNP [dm3] 3R_29050414_SNP [dm6]	C	T	7.276e^-4	0.917	SYNONYMOUS_CODING CG11837 UPSTREAM CG11841
3L	19515388	3L_19515388_SNP [dm3] 3L_19522288_SNP [dm6]	C	T	7.283e^-4	0.917	INTRON Cpr76Bc
2R	14704773	2R_14704773_SNP [dm3] 2R_18817268_SNP [dm6]	A	C	7.288e^-4	0.917	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13179432	2R_13179432_SNP [dm3] 2R_17291927_SNP [dm6]	G	C	7.351e^-4	0.917	INTRON mbl
3R	25355218	3R_25355218_SNP [dm3] 3R_29529496_SNP [dm6]	T	C	7.361e^-4	0.917	INTERGENIC
X	2427400	X_2427400_SNP [dm3] X_2533367_SNP [dm6]	A	G	7.368e^-4	0.917	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3026751	3L_3026751_DEL [dm3] 3L_3026751_DEL [dm6]	AT	G	7.385e^-4	0.917	UPSTREAM aly INTERGENIC
2R	12914456	2R_12914456_SNP [dm3] 2R_17026951_SNP [dm6]	A	G	7.392e^-4	0.917	UPSTREAM RhoGEF2 DOWNSTREAM Ark EXON CR44390	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25620492	3R_25620492_SNP [dm3] 3R_29794770_SNP [dm6]	G	T	7.397e^-4	0.917	DOWNSTREAM kay & 1 other INTRON sro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13048851	2L_13048851_SNP [dm3] 2L_13048851_SNP [dm6]	T	C	7.403e^-4	0.917	INTRON CG9932
2L	13048953	2L_13048953_SNP [dm3] 2L_13048953_SNP [dm6]	T	C	7.403e^-4	0.917	INTRON CG9932
2R	6238689	2R_6238689_SNP [dm3] 2R_10351184_SNP [dm6]	G	T	7.414e^-4	0.917	DOWNSTREAM CG43172 & 1 other INTRON CG42732
X	15574562	X_15574562_SNP [dm3] X_15680529_SNP [dm6]	A	G	7.422e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25976951	3R_25976951_SNP [dm3] 3R_30151229_SNP [dm6]	C	G	7.426e^-4	0.917	UPSTREAM CG15529 INTERGENIC
2L	15813979	2L_15813979_SNP [dm3] 2L_15813979_SNP [dm6]	A	C	7.426e^-4	0.917	INTERGENIC
3R	23184792	3R_23184792_SNP [dm3] 3R_27359070_SNP [dm6]	T	C	7.426e^-4	0.917	UPSTREAM CG42534 INTRON CG42534
2R	4699952	2R_4699952_SNP [dm3] 2R_8812447_SNP [dm6]	G	A	7.431e^-4	0.917	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8453654	3R_8453654_SNP [dm3] 3R_12627932_SNP [dm6]	A	C	7.433e^-4	0.917	UPSTREAM Snx3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	16057698	2R_16057698_DEL [dm3] 2R_20170193_DEL [dm6]	TT	T	7.446e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18946978	2L_18946978_SNP [dm3] 2L_18946978_SNP [dm6]	G	A	7.453e^-4	0.917	DOWNSTREAM CR44740 EXON CR42848	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2172349	3L_2172349_SNP [dm3] 3L_2172349_SNP [dm6]	A	G	7.458e^-4	0.917	DOWNSTREAM CG15820 EXON CR15821
3L	2173688	3L_2173688_SNP [dm3] 3L_2173688_SNP [dm6]	G	T	7.458e^-4	0.917	SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
2L	6244828	2L_6244828_SNP [dm3] 2L_6244828_SNP [dm6]	A	G	7.459e^-4	0.917	INTERGENIC
2R	14615822	2R_14615822_SNP [dm3] 2R_18728317_SNP [dm6]	C	G	7.467e^-4	0.917	SYNONYMOUS_CODING List UTR_3_PRIME List INTRON Hs3st-A
2L	13358765	2L_13358765_SNP [dm3] 2L_13358765_SNP [dm6]	A	T	7.471e^-4	0.917	INTERGENIC
2L	13358779	2L_13358779_SNP [dm3] 2L_13358779_SNP [dm6]	C	A	7.471e^-4	0.917	INTERGENIC
3R	18970565	3R_18970565_DEL [dm3] 3R_23144843_DEL [dm6]	GC	A	7.472e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
X	3141044	X_3141044_SNP [dm3] X_3247011_SNP [dm6]	A	C	7.475e^-4	0.917	INTRON dnc
3R	20393719	3R_20393719_SNP [dm3] 3R_24567997_SNP [dm6]	C	A	7.495e^-4	0.917	INTRON CG13624
3R	17233908	3R_17233908_INS [dm3] 3R_21408186_INS [dm6]	G	GCAG	7.507e^-4	0.917	UTR_3_PRIME CheB93a UPSTREAM CheB93b	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17234305	3R_17234305_SNP [dm3] 3R_21408583_SNP [dm6]	G	A	7.507e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17234455	3R_17234455_INS [dm3] 3R_21408733_INS [dm6]	A	AA	7.507e^-4	0.917	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17473030	2R_17473030_SNP [dm3] 2R_21585525_SNP [dm6]	C	G	7.512e^-4	0.917	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17473032	2R_17473032_SNP [dm3] 2R_21585527_SNP [dm6]	G	A	7.512e^-4	0.917	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2911463	3L_2911463_SNP [dm3] 3L_2911463_SNP [dm6]	T	A	7.518e^-4	0.917	INTRON Shab
3L	2989660	3L_2989660_SNP [dm3] 3L_2989660_SNP [dm6]	G	T	7.518e^-4	0.917	INTERGENIC
3R	18475552	3R_18475552_SNP [dm3] 3R_22649830_SNP [dm6]	T	C	7.518e^-4	0.917	INTRON CG45058
3R	26805233	3R_26805233_SNP [dm3] 3R_30979511_SNP [dm6]	G	A	7.518e^-4	0.917	INTRON 5-HT7
3R	27148897	3R_27148897_SNP [dm3] 3R_31323175_SNP [dm6]	T	A	7.521e^-4	0.917	INTRON CG34347
3L	9815344	3L_9815344_SNP [dm3] 3L_9822244_SNP [dm6]	C	A	7.540e^-4	0.917	INTRON CG43897
2R	8584036	2R_8584036_SNP [dm3] 2R_12696531_SNP [dm6]	G	T	7.545e^-4	0.917	INTERGENIC
2R	8584177	2R_8584177_SNP [dm3] 2R_12696672_SNP [dm6]	A	G	7.545e^-4	0.917	INTERGENIC
X	11071856	X_11071856_SNP [dm3] X_11177823_SNP [dm6]	C	T	7.553e^-4	0.917	INTERGENIC
2R	8584162	2R_8584162_SNP [dm3] 2R_12696657_SNP [dm6]	C	T	7.564e^-4	0.917	INTERGENIC
3R	23941729	3R_23941729_SNP [dm3] 3R_28116007_SNP [dm6]	C	A	7.576e^-4	0.917	INTERGENIC
2L	18729354	2L_18729354_SNP [dm3] 2L_18729354_SNP [dm6]	A	G	7.577e^-4	0.917	INTRON CG10348
3R	26177870	3R_26177870_SNP [dm3] 3R_30352148_SNP [dm6]	C	T	7.580e^-4	0.917	INTRON hdc
3L	12052471	3L_12052471_SNP [dm3] 3L_12059371_SNP [dm6]	G	A	7.605e^-4	0.917	INTRON rols
3L	10232177	3L_10232177_SNP [dm3] 3L_10239077_SNP [dm6]	C	T	7.607e^-4	0.917	INTERGENIC
3L	6038499	3L_6038499_SNP [dm3] 3L_6045399_SNP [dm6]	G	A	7.639e^-4	0.917	INTERGENIC
X	8786796	X_8786796_INS [dm3] X_8892763_INS [dm6]	T	TT	7.642e^-4	0.917	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_Trl
3L	1391278	3L_1391278_SNP [dm3] 3L_1391278_SNP [dm6]	G	A	7.650e^-4	0.917	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6699729	3L_6699729_SNP [dm3] 3L_6706629_SNP [dm6]	C	G	7.652e^-4	0.917	UPSTREAM CG8519 INTRON CG8519
3R	17235231	3R_17235231_SNP [dm3] 3R_21409509_SNP [dm6]	A	G	7.655e^-4	0.917	SYNONYMOUS_CODING CheB93b DOWNSTREAM lbl
3R	21833443	3R_21833443_SNP [dm3] 3R_26007721_SNP [dm6]	A	T	7.665e^-4	0.917	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14676704	3L_14676704_DEL [dm3] 3L_14683604_DEL [dm6]	GAT	G	7.673e^-4	0.917	INTRON ome
3L	14676817	3L_14676817_SNP [dm3] 3L_14683717_SNP [dm6]	C	T	7.673e^-4	0.917	INTRON ome
3L	18296263	3L_18296263_SNP [dm3] 3L_18303163_SNP [dm6]	T	A	7.693e^-4	0.917	UTR_3_PRIME grim
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	7.698e^-4	0.917	INTRON CG32103
3L	21949797	3L_21949797_SNP [dm3] 3L_21956697_SNP [dm6]	G	A	7.706e^-4	0.917	SYNONYMOUS_CODING CG7458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6493745	2L_6493745_SNP [dm3] 2L_6493745_SNP [dm6]	C	T	7.706e^-4	0.917	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26865879	3R_26865879_SNP [dm3] 3R_31040157_SNP [dm6]	C	A	7.738e^-4	0.917	SYNONYMOUS_CODING CanA1	TF binding site mE1_TFBS_sbb
3L	19108422	3L_19108422_SNP [dm3] 3L_19115322_SNP [dm6]	T	C	7.738e^-4	0.917	INTRON CG14082
3L	5194870	3L_5194870_SNP [dm3] 3L_5201770_SNP [dm6]	A	C	7.738e^-4	0.917	UPSTREAM shep INTRON shep
3L	1412066	3L_1412066_SNP [dm3] 3L_1412066_SNP [dm6]	T	A	7.739e^-4	0.917	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site mE1_TFBS_sens
3L	7190617	3L_7190617_SNP [dm3] 3L_7197517_SNP [dm6]	C	G	7.763e^-4	0.917	INTERGENIC
3L	19515343	3L_19515343_SNP [dm3] 3L_19522243_SNP [dm6]	G	C	7.769e^-4	0.917	INTRON Cpr76Bc
3R	23941318	3R_23941318_SNP [dm3] 3R_28115596_SNP [dm6]	G	C	7.777e^-4	0.917	INTERGENIC
2L	6445964	2L_6445964_SNP [dm3] 2L_6445964_SNP [dm6]	C	T	7.785e^-4	0.917	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad
2R	10986057	2R_10986057_SNP [dm3] 2R_15098552_SNP [dm6]	C	T	7.802e^-4	0.917	INTERGENIC
3L	6067738	3L_6067738_SNP [dm3] 3L_6074638_SNP [dm6]	C	A	7.808e^-4	0.917	NON_SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6459334	2L_6459334_SNP [dm3] 2L_6459334_SNP [dm6]	A	G	7.812e^-4	0.917	UTR_3_PRIME CG16947 DOWNSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3L	13477741	3L_13477741_SNP [dm3] 3L_13484641_SNP [dm6]	G	A	7.836e^-4	0.917	SYNONYMOUS_CODING Abp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13478778	3L_13478778_SNP [dm3] 3L_13485678_SNP [dm6]	G	T	7.836e^-4	0.917	SYNONYMOUS_CODING Abp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	6821262	3R_6821262_SNP [dm3] 3R_10995540_SNP [dm6]	C	G	7.836e^-4	0.917	INTRON CG34114
2R	15692432	2R_15692432_SNP [dm3] 2R_19804927_SNP [dm6]	C	T	7.842e^-4	0.917	INTERGENIC
2R	15692514	2R_15692514_SNP [dm3] 2R_19805009_SNP [dm6]	C	T	7.842e^-4	0.917	INTERGENIC
3R	27581414	3R_27581414_SNP [dm3] 3R_31755692_SNP [dm6]	G	A	7.866e^-4	0.917	SYNONYMOUS_CODING CG2187 UPSTREAM salt
2R	5586230	2R_5586230_SNP [dm3] 2R_9698725_SNP [dm6]	G	A	7.873e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14582905	2R_14582905_SNP [dm3] 2R_18695400_SNP [dm6]	C	G	7.886e^-4	0.917	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
3R	18643144	3R_18643144_SNP [dm3] 3R_22817422_SNP [dm6]	A	G	7.893e^-4	0.917	INTERGENIC
3L	14958785	3L_14958785_SNP [dm3] 3L_14965685_SNP [dm6]	G	T	7.897e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9427708	2R_9427708_SNP [dm3] 2R_13540203_SNP [dm6]	A	T	7.904e^-4	0.917	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
X	20801972	X_20801972_DEL [dm3] X_20930945_DEL [dm6]	CTTAAT	C	7.909e^-4	0.917	DOWNSTREAM CG11227 INTERGENIC
3L	11893329	3L_11893329_SNP [dm3] 3L_11900229_SNP [dm6]	T	C	7.913e^-4	0.917	INTRON CG44837 EXON CR43624
2L	1317439	2L_1317439_SNP [dm3] 2L_1317439_SNP [dm6]	A	C	7.915e^-4	0.917	INTERGENIC
3L	6064993	3L_6064993_SNP [dm3] 3L_6071893_SNP [dm6]	C	T	7.917e^-4	0.917	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
2R	6082618	2R_6082618_SNP [dm3] 2R_10195113_SNP [dm6]	T	C	7.918e^-4	0.917	INTERGENIC
X	3031179	X_3031179_SNP [dm3] X_3137146_SNP [dm6]	C	A	7.922e^-4	0.917	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	1084130	X_1084130_SNP [dm3] X_1190097_SNP [dm6]	T	C	7.922e^-4	0.917	INTERGENIC
X	1089825	X_1089825_SNP [dm3] X_1195792_SNP [dm6]	C	G	7.922e^-4	0.917	SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1090513	X_1090513_SNP [dm3] X_1196480_SNP [dm6]	T	C	7.922e^-4	0.917	UTR_3_PRIME CG11380
X	1091201	X_1091201_SNP [dm3] X_1197168_SNP [dm6]	C	T	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091238	X_1091238_DEL [dm3] X_1197205_DEL [dm6]	GG	G	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091294	X_1091294_SNP [dm3] X_1197261_SNP [dm6]	G	A	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091303	X_1091303_SNP [dm3] X_1197270_SNP [dm6]	A	G	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091407	X_1091407_SNP [dm3] X_1197374_SNP [dm6]	T	G	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1091435	X_1091435_SNP [dm3] X_1197402_SNP [dm6]	A	G	7.922e^-4	0.917	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo

By genomic position
Variant impact
Gene name

mean phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results