DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.875e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1496 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	2.905e^-6	0.444	UPSTREAM mir-274 INTRON CG32085
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.611e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11649711	3L_11649711_SNP [dm3] 3L_11656611_SNP [dm6]	T	A	4.371e^-6	0.444	UPSTREAM mir-274 INTRON CG32085
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	4.653e^-6	0.444	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
3R	9956819	3R_9956819_SNP [dm3] 3R_14131097_SNP [dm6]	G	C	4.677e^-6	0.444	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	5.293e^-6	0.444	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	5.293e^-6	0.444	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	5.293e^-6	0.444	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709565	3L_709565_SNP [dm3] 3L_709565_SNP [dm6]	C	T	5.293e^-6	0.444	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	5.293e^-6	0.444	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	5.293e^-6	0.444	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5434922	2L_5434922_SNP [dm3] 2L_5434922_SNP [dm6]	C	A	5.932e^-6	0.475	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	8.301e^-6	0.589	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	8.301e^-6	0.589	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	709492	3L_709492_SNP [dm3] 3L_709492_SNP [dm6]	T	C	8.431e^-6	0.589	SPLICE_SITE_REGION CkIIalpha-i3 SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	8.694e^-6	0.589	INTERGENIC
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	9.562e^-6	0.623	UPSTREAM mir-274 INTRON CG32085
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.081e^-5	0.651	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.081e^-5	0.651	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.111e^-5	0.651	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8423297	X_8423297_SNP [dm3] X_8529264_SNP [dm6]	C	A	1.147e^-5	0.651	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	16330220	3L_16330220_SNP [dm3] 3L_16337120_SNP [dm6]	T	A	1.234e^-5	0.679	INTERGENIC
3L	13341789	3L_13341789_SNP [dm3] 3L_13348689_SNP [dm6]	C	T	1.340e^-5	0.703	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	709494	3L_709494_SNP [dm3] 3L_709494_SNP [dm6]	G	T	1.400e^-5	0.703	NON_SYNONYMOUS_CODING CkIIalpha-i3 SPLICE_SITE_REGION CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	1.442e^-5	0.703	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	13877789	2L_13877789_SNP [dm3] 2L_13877789_SNP [dm6]	T	G	1.553e^-5	0.703	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13877790	2L_13877790_SNP [dm3] 2L_13877790_SNP [dm6]	G	C	1.553e^-5	0.703	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19696335	2L_19696335_SNP [dm3] 2L_19696335_SNP [dm6]	C	A	1.569e^-5	0.703	INTRON Lar
3L	16325313	3L_16325313_SNP [dm3] 3L_16332213_SNP [dm6]	T	G	1.590e^-5	0.703	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13471274	3R_13471274_SNP [dm3] 3R_17645552_SNP [dm6]	C	T	1.598e^-5	0.703	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	1.832e^-5	0.752	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709450	3L_709450_SNP [dm3] 3L_709450_SNP [dm6]	G	A	1.832e^-5	0.752	SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	6355104	3R_6355104_SNP [dm3] 3R_10529382_SNP [dm6]	G	T	1.842e^-5	0.752	INTRON hth
2L	13876299	2L_13876299_SNP [dm3] 2L_13876299_SNP [dm6]	G	C	1.884e^-5	0.752	INTRON CenG1A
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.923e^-5	0.752	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19607996	2L_19607996_SNP [dm3] 2L_19607996_SNP [dm6]	G	C	2.074e^-5	0.794	INTRON Lar	TF binding site BDTNP1_TFBS_da
2R	15046118	2R_15046118_SNP [dm3] 2R_19158613_SNP [dm6]	T	C	2.245e^-5	0.837	INTRON ena	TF binding site mE1_TFBS_inv
2L	16125414	2L_16125414_SNP [dm3] 2L_16125414_SNP [dm6]	G	C	2.316e^-5	0.837	INTERGENIC
2R	12289145	2R_12289145_SNP [dm3] 2R_16401640_SNP [dm6]	T	A	2.350e^-5	0.837	INTRON Sema-2b
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	2.562e^-5	0.837	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5650232	3L_5650232_SNP [dm3] 3L_5657132_SNP [dm6]	T	C	2.574e^-5	0.837	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5650256	3L_5650256_SNP [dm3] 3L_5657156_SNP [dm6]	G	C	2.574e^-5	0.837	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	2.576e^-5	0.837	INTRON Wnt6
2R	4904810	2R_4904810_SNP [dm3] 2R_9017305_SNP [dm6]	C	T	2.576e^-5	0.837	UPSTREAM CG13747 & 1 other INTERGENIC
X	19364133	X_19364133_SNP [dm3] X_19470100_SNP [dm6]	A	G	2.617e^-5	0.837	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
X	21931868	X_21931868_SNP [dm3] X_22530032_SNP [dm6]	C	T	2.679e^-5	0.842	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	25391719	3R_25391719_DEL [dm3] 3R_29565997_DEL [dm6]	GTGG	G	2.749e^-5	0.843	DOWNSTREAM Dr INTERGENIC
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	2.779e^-5	0.843	INTRON CenG1A
X	9421316	X_9421316_SNP [dm3] X_9527283_SNP [dm6]	A	C	3.182e^-5	0.868	INTRON CG32700
3L	7016299	3L_7016299_SNP [dm3] 3L_7023199_SNP [dm6]	T	C	3.315e^-5	0.868	INTRON Mp
2L	5158849	2L_5158849_SNP [dm3] 2L_5158849_SNP [dm6]	G	A	3.580e^-5	0.868	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
3R	25370157	3R_25370157_SNP [dm3] 3R_29544435_SNP [dm6]	C	T	3.699e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
X	19520168	X_19520168_SNP [dm3] X_19626135_SNP [dm6]	G	A	3.726e^-5	0.868	NON_SYNONYMOUS_CODING CG14212 DOWNSTREAM MKP-4 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13473654	3R_13473654_SNP [dm3] 3R_17647932_SNP [dm6]	C	G	3.784e^-5	0.868	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7949869	3L_7949869_SNP [dm3] 3L_7956769_SNP [dm6]	A	C	3.787e^-5	0.868	INTERGENIC
2L	3277518	2L_3277518_SNP [dm3] 2L_3277518_SNP [dm6]	T	G	3.817e^-5	0.868	INTRON CG3332	TF binding site mE1_TFBS_cad
2L	3277531	2L_3277531_SNP [dm3] 2L_3277531_SNP [dm6]	C	T	3.817e^-5	0.868	INTRON CG3332	TF binding site mE1_TFBS_cad
3L	13241256	3L_13241256_SNP [dm3] 3L_13248156_SNP [dm6]	C	T	3.888e^-5	0.868	SYNONYMOUS_CODING CG32119 INTRON caps
3L	9815207	3L_9815207_SNP [dm3] 3L_9822107_SNP [dm6]	T	A	3.900e^-5	0.868	INTRON CG43897
2L	13745184	2L_13745184_SNP [dm3] 2L_13745184_SNP [dm6]	T	A	4.253e^-5	0.868	INTERGENIC
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	4.265e^-5	0.868	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19604568	2L_19604568_SNP [dm3] 2L_19604568_SNP [dm6]	A	T	4.478e^-5	0.868	INTRON Lar & 1 other
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	4.763e^-5	0.868	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	4.921e^-5	0.868	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18124962	3L_18124962_SNP [dm3] 3L_18131862_SNP [dm6]	G	A	5.136e^-5	0.868	SYNONYMOUS_CODING Cyp312a1
2L	16239362	2L_16239362_SNP [dm3] 2L_16239362_SNP [dm6]	T	A	5.332e^-5	0.868	SYNONYMOUS_CODING CG42817
3R	25603939	3R_25603939_SNP [dm3] 3R_29778217_SNP [dm6]	A	G	5.542e^-5	0.868	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	13877686	2L_13877686_SNP [dm3] 2L_13877686_SNP [dm6]	C	T	5.673e^-5	0.868	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16571227	2R_16571227_SNP [dm3] 2R_20683722_SNP [dm6]	T	G	5.707e^-5	0.868	INTERGENIC
2L	3387669	2L_3387669_SNP [dm3] 2L_3387669_SNP [dm6]	A	G	5.709e^-5	0.868	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
3L	11650223	3L_11650223_SNP [dm3] 3L_11657123_SNP [dm6]	A	G	5.833e^-5	0.868	DOWNSTREAM mir-274 INTRON CG32085
2R	2422710	2R_2422710_SNP [dm3] 2R_6535205_SNP [dm6]	T	C	5.874e^-5	0.868	INTRON jing
2L	5513325	2L_5513325_SNP [dm3] 2L_5513325_SNP [dm6]	A	C	5.895e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1025009	2L_1025009_SNP [dm3] 2L_1025009_SNP [dm6]	G	T	5.906e^-5	0.868	INTRON IA-2
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	6.147e^-5	0.868	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10935834	X_10935834_SNP [dm3] X_11041801_SNP [dm6]	A	G	6.295e^-5	0.868	INTERGENIC
3R	17877895	3R_17877895_SNP [dm3] 3R_22052173_SNP [dm6]	T	A	6.347e^-5	0.868	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	13473665	3R_13473665_SNP [dm3] 3R_17647943_SNP [dm6]	T	C	6.387e^-5	0.868	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	746873	2L_746873_SNP [dm3] 2L_746873_SNP [dm6]	G	C	6.492e^-5	0.868	INTERGENIC
2R	10820287	2R_10820287_SNP [dm3] 2R_14932782_SNP [dm6]	C	T	6.538e^-5	0.868	UPSTREAM CG12853 INTRON CG10253
3L	709696	3L_709696_SNP [dm3] 3L_709696_SNP [dm6]	C	T	6.543e^-5	0.868	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	13411499	2L_13411499_SNP [dm3] 2L_13411499_SNP [dm6]	C	G	6.562e^-5	0.868	SYNONYMOUS_CODING Vm34Ca DOWNSTREAM CG7110
2L	13875995	2L_13875995_SNP [dm3] 2L_13875995_SNP [dm6]	A	G	6.585e^-5	0.868	INTRON CenG1A
2L	13716643	2L_13716643_SNP [dm3] 2L_13716643_SNP [dm6]	T	G	6.612e^-5	0.868	INTRON CG31814
2L	10513960	2L_10513960_SNP [dm3] 2L_10513960_SNP [dm6]	T	C	6.991e^-5	0.868	INTRON Fatp & 1 other
3L	709732	3L_709732_SNP [dm3] 3L_709732_SNP [dm6]	T	C	7.057e^-5	0.868	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	2717863	2R_2717863_SNP [dm3] 2R_6830358_SNP [dm6]	G	T	7.090e^-5	0.868	DOWNSTREAM CG34215 INTRON CG15236
3L	12447176	3L_12447176_SNP [dm3] 3L_12454076_SNP [dm6]	G	T	7.125e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12447179	3L_12447179_SNP [dm3] 3L_12454079_SNP [dm6]	T	A	7.125e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10315356	3L_10315356_SNP [dm3] 3L_10322256_SNP [dm6]	T	G	7.492e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18255489	X_18255489_SNP [dm3] X_18361456_SNP [dm6]	G	A	7.592e^-5	0.868	SYNONYMOUS_CODING CG6106
2L	9489983	2L_9489983_SNP [dm3] 2L_9489983_SNP [dm6]	T	C	7.667e^-5	0.868	INTERGENIC
3R	13473998	3R_13473998_SNP [dm3] 3R_17648276_SNP [dm6]	C	A	7.814e^-5	0.868	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	13716844	2L_13716844_SNP [dm3] 2L_13716844_SNP [dm6]	C	G	7.898e^-5	0.868	INTRON CG31814
2L	10562564	2L_10562564_SNP [dm3] 2L_10562564_SNP [dm6]	G	T	8.001e^-5	0.868	INTRON Trim9
2R	19024962	2R_19024962_INS [dm3] 2R_23137439_INS [dm6]	A	AA	8.084e^-5	0.868	INTERGENIC
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	8.119e^-5	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	13471268	3R_13471268_SNP [dm3] 3R_17645546_SNP [dm6]	G	C	8.150e^-5	0.868	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19854015	2L_19854015_SNP [dm3] 2L_19854015_SNP [dm6]	G	A	8.289e^-5	0.868	INTRON sick
2L	13910746	2L_13910746_SNP [dm3] 2L_13910746_SNP [dm6]	C	T	8.599e^-5	0.868	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3L	14890743	3L_14890743_SNP [dm3] 3L_14897643_SNP [dm6]	A	C	8.677e^-5	0.868	INTERGENIC
2L	6391147	2L_6391147_SNP [dm3] 2L_6391147_SNP [dm6]	A	G	8.844e^-5	0.868	SYNONYMOUS_CODING CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9495592	3L_9495592_SNP [dm3] 3L_9502492_SNP [dm6]	T	C	8.859e^-5	0.868	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	18849428	X_18849428_SNP [dm3] X_18955395_SNP [dm6]	C	G	8.875e^-5	0.868	INTRON CG43759
X	18849530	X_18849530_SNP [dm3] X_18955497_SNP [dm6]	G	A	8.875e^-5	0.868	INTRON CG43759
X	18849532	X_18849532_SNP [dm3] X_18955499_SNP [dm6]	A	G	8.875e^-5	0.868	INTRON CG43759
X	18849542	X_18849542_SNP [dm3] X_18955509_SNP [dm6]	T	A	8.875e^-5	0.868	INTRON CG43759
X	18849579	X_18849579_SNP [dm3] X_18955546_SNP [dm6]	A	G	8.875e^-5	0.868	INTRON CG43759
2L	767684	2L_767684_SNP [dm3] 2L_767684_SNP [dm6]	G	A	9.051e^-5	0.868	INTERGENIC
3L	18091924	3L_18091924_SNP [dm3] 3L_18098824_SNP [dm6]	C	T	9.067e^-5	0.868	INTRON CG13698
2L	4950677	2L_4950677_SNP [dm3] 2L_4950677_SNP [dm6]	T	C	9.099e^-5	0.868	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5338140	3L_5338140_SNP [dm3] 3L_5345040_SNP [dm6]	A	G	9.197e^-5	0.868	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18110792	3L_18110792_SNP [dm3] 3L_18117692_SNP [dm6]	C	T	9.244e^-5	0.868	UTR_3_PRIME CG32195 INTRON CG7341
2L	3380673	2L_3380673_SNP [dm3] 2L_3380673_SNP [dm6]	T	A	9.262e^-5	0.868	INTERGENIC
2L	5513310	2L_5513310_INS [dm3] 2L_5513310_INS [dm6]	A	ACA	9.450e^-5	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	9.587e^-5	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15271806	2R_15271806_SNP [dm3] 2R_19384301_SNP [dm6]	C	T	9.729e^-5	0.868	NON_SYNONYMOUS_CODING CG10073
2L	22254890	2L_22254890_SNP [dm3] 2L_22254890_SNP [dm6]	G	T	9.779e^-5	0.868	INTRON Tif-IA
2L	13412120	2L_13412120_SNP [dm3] 2L_13412120_SNP [dm6]	T	G	9.809e^-5	0.868	UPSTREAM CG16848 & 1 other INTERGENIC
2R	5355981	2R_5355981_SNP [dm3] 2R_9468476_SNP [dm6]	G	C	9.921e^-5	0.868	INTRON Camta
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	9.960e^-5	0.868	INTERGENIC
X	4642847	X_4642847_SNP [dm3] X_4748814_SNP [dm6]	T	C	9.982e^-5	0.868	INTERGENIC
3R	14971533	3R_14971533_SNP [dm3] 3R_19145811_SNP [dm6]	G	C	1.005e^-4	0.868	SYNONYMOUS_CODING Ppcs
3L	4954573	3L_4954573_SNP [dm3] 3L_4954573_SNP [dm6]	G	A	1.012e^-4	0.868	INTRON Con
2R	16188909	2R_16188909_SNP [dm3] 2R_20301404_SNP [dm6]	G	T	1.042e^-4	0.868	UPSTREAM CR44640 INTERGENIC
2L	964006	2L_964006_SNP [dm3] 2L_964006_SNP [dm6]	C	G	1.054e^-4	0.868	INTERGENIC
X	15091413	X_15091413_SNP [dm3] X_15197380_SNP [dm6]	G	A	1.078e^-4	0.868	INTERGENIC
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.083e^-4	0.868	INTRON fry	TF binding site mE1_TFBS_cad
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	1.083e^-4	0.868	INTRON fry	TF binding site mE1_TFBS_cad
3L	18197148	3L_18197148_SNP [dm3] 3L_18204048_SNP [dm6]	A	T	1.083e^-4	0.868	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17882407	2L_17882407_SNP [dm3] 2L_17882407_SNP [dm6]	T	C	1.122e^-4	0.868	INTERGENIC
2R	7027520	2R_7027520_SNP [dm3] 2R_11140015_SNP [dm6]	T	G	1.131e^-4	0.868	UTR_3_PRIME CG13229 DOWNSTREAM BBS4
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.138e^-4	0.868	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.173e^-4	0.868	INTERGENIC
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.179e^-4	0.868	UPSTREAM CR45341 INTRON CG17292
2L	13411777	2L_13411777_SNP [dm3] 2L_13411777_SNP [dm6]	C	T	1.183e^-4	0.868	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
3L	10315322	3L_10315322_SNP [dm3] 3L_10322222_SNP [dm6]	A	G	1.191e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	1.198e^-4	0.868	SYNONYMOUS_CODING 5-HT1A
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	1.206e^-4	0.868	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	16994418	2L_16994418_SNP [dm3] 2L_16994418_SNP [dm6]	T	C	1.221e^-4	0.868	DOWNSTREAM beat-IIIb INTERGENIC
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	1.246e^-4	0.868	INTRON sick	TF binding site mE1_TFBS_cad
2L	8762745	2L_8762745_SNP [dm3] 2L_8762745_SNP [dm6]	T	G	1.263e^-4	0.868	INTERGENIC
2L	7374398	2L_7374398_SNP [dm3] 2L_7374398_SNP [dm6]	T	C	1.280e^-4	0.868	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	18221229	3L_18221229_SNP [dm3] 3L_18228129_SNP [dm6]	G	C	1.281e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1100883	2L_1100883_SNP [dm3] 2L_1100883_SNP [dm6]	A	G	1.284e^-4	0.868	INTRON CG4629
X	20403404	X_20403404_SNP [dm3] X_20532377_SNP [dm6]	G	T	1.286e^-4	0.868	INTERGENIC
X	18849580	X_18849580_SNP [dm3] X_18955547_SNP [dm6]	A	T	1.300e^-4	0.868	INTRON CG43759
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	1.301e^-4	0.868	INTRON ktub
2L	5466864	2L_5466864_SNP [dm3] 2L_5466864_SNP [dm6]	T	C	1.335e^-4	0.868	UTR_3_PRIME mid DOWNSTREAM mid	TF binding site mE1_TFBS_HSA
3L	11185431	3L_11185431_SNP [dm3] 3L_11192331_SNP [dm6]	A	G	1.344e^-4	0.868	INTRON GlcAT-P
3L	14512699	3L_14512699_SNP [dm3] 3L_14519599_SNP [dm6]	G	A	1.351e^-4	0.868	DOWNSTREAM CG4613 INTRON bbg
3L	14512706	3L_14512706_SNP [dm3] 3L_14519606_SNP [dm6]	A	C	1.351e^-4	0.868	DOWNSTREAM CG4613 INTRON bbg
2L	3692670	2L_3692670_SNP [dm3] 2L_3692670_SNP [dm6]	G	A	1.362e^-4	0.868	UPSTREAM CG16704 DOWNSTREAM CG3513 & 2 others INTERGENIC
2L	13414010	2L_13414010_SNP [dm3] 2L_13414010_SNP [dm6]	A	C	1.377e^-4	0.868	NON_SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
2L	15733620	2L_15733620_SNP [dm3] 2L_15733620_SNP [dm6]	T	C	1.388e^-4	0.868	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26047429	3R_26047429_SNP [dm3] 3R_30221707_SNP [dm6]	T	A	1.405e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14226808	3L_14226808_SNP [dm3] 3L_14233708_SNP [dm6]	A	G	1.420e^-4	0.868	NON_SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	1.428e^-4	0.868	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11234734	3R_11234734_SNP [dm3] 3R_15409012_SNP [dm6]	T	C	1.440e^-4	0.868	START_GAINED Atx2 UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11234777	3R_11234777_SNP [dm3] 3R_15409055_SNP [dm6]	C	T	1.440e^-4	0.868	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14947132	X_14947132_SNP [dm3] X_15053099_SNP [dm6]	C	A	1.444e^-4	0.868	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13330702	3L_13330702_SNP [dm3] 3L_13337602_SNP [dm6]	G	C	1.459e^-4	0.868	INTERGENIC
2L	19527247	2L_19527247_SNP [dm3] 2L_19527247_SNP [dm6]	C	G	1.477e^-4	0.868	UTR_3_PRIME CG10165 UPSTREAM CG10166 DOWNSTREAM CG10165 INTRON CG10137
2L	19527301	2L_19527301_SNP [dm3] 2L_19527301_SNP [dm6]	C	A	1.477e^-4	0.868	UTR_3_PRIME CG10165 UPSTREAM CG10166 INTRON CG10137
2L	19527710	2L_19527710_SNP [dm3] 2L_19527710_SNP [dm6]	A	G	1.477e^-4	0.868	INTRON CG10137 & 1 other
2L	19528054	2L_19528054_SNP [dm3] 2L_19528054_SNP [dm6]	T	C	1.477e^-4	0.868	INTRON CG10137 & 1 other
2R	13163582	2R_13163582_SNP [dm3] 2R_17276077_SNP [dm6]	T	C	1.498e^-4	0.868	INTRON mbl
3R	26871242	3R_26871242_SNP [dm3] 3R_31045520_SNP [dm6]	G	A	1.503e^-4	0.868	UPSTREAM CG33920 INTRON CanA1
X	5544356	X_5544356_SNP [dm3] X_5650323_SNP [dm6]	G	A	1.513e^-4	0.868	DOWNSTREAM CG42265 INTERGENIC
3L	13269262	3L_13269262_SNP [dm3] 3L_13276162_SNP [dm6]	A	G	1.520e^-4	0.868	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
3L	15606722	3L_15606722_SNP [dm3] 3L_15613622_SNP [dm6]	T	C	1.531e^-4	0.868	SYNONYMOUS_CODING comm3 UPSTREAM CG13449
3L	3131764	3L_3131764_SNP [dm3] 3L_3131764_SNP [dm6]	T	C	1.540e^-4	0.868	INTRON CG11537	TF binding site mE1_TFBS_Kr
3L	13330711	3L_13330711_SNP [dm3] 3L_13337611_SNP [dm6]	T	A	1.543e^-4	0.868	INTERGENIC
X	13624147	X_13624147_SNP [dm3] X_13730114_SNP [dm6]	A	G	1.579e^-4	0.868	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14111218	2L_14111218_SNP [dm3] 2L_14111218_SNP [dm6]	A	G	1.580e^-4	0.868	UPSTREAM CG31769 INTERGENIC
3R	13472395	3R_13472395_SNP [dm3] 3R_17646673_SNP [dm6]	T	C	1.598e^-4	0.868	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	1.604e^-4	0.868	INTRON nAChRalpha6
2L	19439624	2L_19439624_SNP [dm3] 2L_19439624_SNP [dm6]	A	T	1.616e^-4	0.868	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19073621	2R_19073621_SNP [dm3] 2R_23186098_SNP [dm6]	G	C	1.623e^-4	0.868	DOWNSTREAM CG13539 INTRON CG34371
2L	13231337	2L_13231337_SNP [dm3] 2L_13231337_SNP [dm6]	A	G	1.624e^-4	0.868	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9128514	2R_9128514_SNP [dm3] 2R_13241009_SNP [dm6]	G	T	1.630e^-4	0.868	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14708185	X_14708185_INS [dm3] X_14814152_INS [dm6]	A	AA	1.640e^-4	0.868	INTRON rut
3L	11577403	3L_11577403_SNP [dm3] 3L_11584303_SNP [dm6]	G	A	1.650e^-4	0.868	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
3R	10267064	3R_10267064_SNP [dm3] 3R_14441342_SNP [dm6]	G	T	1.650e^-4	0.868	INTRON cv-c
3L	10557017	3L_10557017_SNP [dm3] 3L_10563917_SNP [dm6]	C	T	1.660e^-4	0.868	INTRON A2bp1
2L	8064014	2L_8064014_SNP [dm3] 2L_8064014_SNP [dm6]	C	T	1.679e^-4	0.868	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16402092	2L_16402092_SNP [dm3] 2L_16402092_SNP [dm6]	G	A	1.684e^-4	0.868	INTRON CG5888
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	1.691e^-4	0.868	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
2L	20702984	2L_20702984_SNP [dm3] 2L_20702984_SNP [dm6]	A	G	1.716e^-4	0.868	INTRON Hr38
2L	15732893	2L_15732893_SNP [dm3] 2L_15732893_SNP [dm6]	A	T	1.734e^-4	0.868	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4418733	3L_4418733_SNP [dm3] 3L_4418733_SNP [dm6]	A	G	1.734e^-4	0.868	START_GAINED DOR UTR_5_PRIME DOR INTRON DOR	TF binding site mE1_TFBS_chinmo
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	1.741e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3380094	2L_3380094_SNP [dm3] 2L_3380094_SNP [dm6]	C	A	1.744e^-4	0.868	INTERGENIC
2L	3380110	2L_3380110_SNP [dm3] 2L_3380110_SNP [dm6]	T	A	1.744e^-4	0.868	INTERGENIC
2L	19542898	2L_19542898_DEL [dm3] 2L_19542898_DEL [dm6]	CA	G	1.747e^-4	0.868		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7659801	2L_7659801_SNP [dm3] 2L_7659801_SNP [dm6]	T	C	1.761e^-4	0.868	UPSTREAM Slob INTRON Slob	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4650173	2L_4650173_SNP [dm3] 2L_4650173_SNP [dm6]	T	A	1.779e^-4	0.868	INTERGENIC
3R	14449968	3R_14449968_SNP [dm3] 3R_18624246_SNP [dm6]	C	A	1.780e^-4	0.868	INTRON qin
2L	7371585	2L_7371585_SNP [dm3] 2L_7371585_SNP [dm6]	C	A	1.799e^-4	0.868	INTRON Wnt10
X	13623922	X_13623922_SNP [dm3] X_13729889_SNP [dm6]	G	A	1.801e^-4	0.868	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7062426	3L_7062426_SNP [dm3] 3L_7069326_SNP [dm6]	C	G	1.808e^-4	0.868	UPSTREAM CG32391 INTRON CG8641
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.837e^-4	0.868	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12968846	3R_12968846_SNP [dm3] 3R_17143124_SNP [dm6]	A	T	1.838e^-4	0.868	UPSTREAM TwdlW INTERGENIC
X	19364153	X_19364153_SNP [dm3] X_19470120_SNP [dm6]	C	T	1.839e^-4	0.868	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	1.859e^-4	0.868	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13156322	3R_13156322_SNP [dm3] 3R_17330600_SNP [dm6]	C	G	1.863e^-4	0.868	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5513802	2L_5513802_INS [dm3] 2L_5513802_INS [dm6]	A	AA	1.879e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	22160471	3L_22160471_SNP [dm3] 3L_22167371_SNP [dm6]	A	G	1.884e^-4	0.868	INTRON olf413
2R	16400509	2R_16400509_SNP [dm3] 2R_20513004_SNP [dm6]	C	T	1.890e^-4	0.868	SPLICE_SITE_REGION CG13426 SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
3R	23487764	3R_23487764_SNP [dm3] 3R_27662042_SNP [dm6]	G	C	1.906e^-4	0.868	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23487765	3R_23487765_SNP [dm3] 3R_27662043_SNP [dm6]	T	C	1.906e^-4	0.868	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1325960	2R_1325960_SNP [dm3] 2R_5438455_SNP [dm6]	T	C	1.926e^-4	0.868	INTRON laccase2	transposable element FlyBase
3R	14732129	3R_14732129_SNP [dm3] 3R_18906407_SNP [dm6]	T	A	1.933e^-4	0.868	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2135350	3R_2135350_SNP [dm3] 3R_6309628_SNP [dm6]	A	G	1.939e^-4	0.868	UPSTREAM CG31560 & 1 other INTERGENIC
3L	16363371	3L_16363371_SNP [dm3] 3L_16370271_SNP [dm6]	T	A	1.946e^-4	0.868	DOWNSTREAM CG4842 & 1 other INTRON CG18814
2R	18604862	2R_18604862_SNP [dm3] 2R_22717357_SNP [dm6]	T	A	1.954e^-4	0.868	UTR_3_PRIME jbug DOWNSTREAM CG30268
2R	19735599	2R_19735599_SNP [dm3] 2R_23848076_SNP [dm6]	G	C	1.960e^-4	0.868	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
3L	4685922	3L_4685922_SNP [dm3] 3L_4685922_SNP [dm6]	A	T	1.961e^-4	0.868	INTRON axo
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	1.987e^-4	0.868	SYNONYMOUS_CODING 5-HT1A
3L	5650096	3L_5650096_SNP [dm3] 3L_5656996_SNP [dm6]	A	C	1.992e^-4	0.868	UPSTREAM sif INTRON lin-28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19974125	2L_19974125_SNP [dm3] 2L_19974125_SNP [dm6]	G	A	1.995e^-4	0.868	INTRON CG43861
2L	19756071	2L_19756071_SNP [dm3] 2L_19756071_SNP [dm6]	T	C	1.999e^-4	0.868	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
3R	16649858	3R_16649858_SNP [dm3] 3R_20824136_SNP [dm6]	T	A	2.000e^-4	0.868	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25608446	3R_25608446_SNP [dm3] 3R_29782724_SNP [dm6]	A	T	2.012e^-4	0.868	UTR_5_PRIME kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	19675350	2L_19675350_SNP [dm3] 2L_19675350_SNP [dm6]	C	T	2.030e^-4	0.868	INTRON Lar
2L	5514630	2L_5514630_SNP [dm3] 2L_5514630_SNP [dm6]	C	G	2.031e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11669478	3L_11669478_SNP [dm3] 3L_11676378_SNP [dm6]	A	T	2.053e^-4	0.868	INTRON CG32085
X	16871558	X_16871558_SNP [dm3] X_16977525_SNP [dm6]	G	A	2.076e^-4	0.868	INTRON CG45002
2L	962094	2L_962094_SNP [dm3] 2L_962094_SNP [dm6]	G	A	2.090e^-4	0.868	INTERGENIC
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.094e^-4	0.868	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.094e^-4	0.868	INTERGENIC
3L	12632958	3L_12632958_SNP [dm3] 3L_12639858_SNP [dm6]	T	C	2.110e^-4	0.868	INTRON CR32111
2L	8055465	2L_8055465_SNP [dm3] 2L_8055465_SNP [dm6]	T	G	2.126e^-4	0.868	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8055468	2L_8055468_SNP [dm3] 2L_8055468_SNP [dm6]	C	T	2.126e^-4	0.868	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9825822	2L_9825822_SNP [dm3] 2L_9825822_SNP [dm6]	C	A	2.128e^-4	0.868	INTRON nAChRalpha6
2L	16124820	2L_16124820_SNP [dm3] 2L_16124820_SNP [dm6]	T	C	2.132e^-4	0.868	INTERGENIC
2L	8188889	2L_8188889_SNP [dm3] 2L_8188889_SNP [dm6]	C	A	2.136e^-4	0.868	INTRON Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7319363	X_7319363_SNP [dm3] X_7425330_SNP [dm6]	A	T	2.139e^-4	0.868	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	5961775	2L_5961775_SNP [dm3] 2L_5961775_SNP [dm6]	T	G	2.149e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13155903	2L_13155903_SNP [dm3] 2L_13155903_SNP [dm6]	T	A	2.150e^-4	0.868	INTERGENIC
2L	4952225	2L_4952225_SNP [dm3] 2L_4952225_SNP [dm6]	C	T	2.154e^-4	0.868	DOWNSTREAM Jon25Bii INTERGENIC	TF binding site mE1_TFBS_cad
2L	263222	2L_263222_SNP [dm3] 2L_263222_SNP [dm6]	G	A	2.155e^-4	0.868	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 & 1 other INTRON CG3645
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	2.169e^-4	0.868	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	2.174e^-4	0.868	INTRON ana	regulatory region REDfly_CRMs
2L	19533892	2L_19533892_SNP [dm3] 2L_19533892_SNP [dm6]	C	A	2.183e^-4	0.868	DOWNSTREAM CG10137 INTRON CG33116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	19533965	2L_19533965_INS [dm3] 2L_19533965_INS [dm6]	T	TTGCTT	2.183e^-4	0.868	DOWNSTREAM CG10137 INTRON CG33116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	19949326	2L_19949326_SNP [dm3] 2L_19949326_SNP [dm6]	T	C	2.198e^-4	0.868	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19974108	2L_19974108_SNP [dm3] 2L_19974108_SNP [dm6]	G	T	2.203e^-4	0.868	INTRON CG43861
2R	10029374	2R_10029374_DEL [dm3] 2R_14141869_DEL [dm6]	TT	T	2.208e^-4	0.868	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	19577867	2L_19577867_SNP [dm3] 2L_19577867_SNP [dm6]	C	A	2.215e^-4	0.868	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	21312867	3L_21312867_SNP [dm3] 3L_21319767_SNP [dm6]	G	T	2.230e^-4	0.868	START_GAINED Rab26 UTR_5_PRIME Rab26 UPSTREAM Rab26	TF binding site mE1_TFBS_Trl
3L	16050182	3L_16050182_INS [dm3] 3L_16057082_INS [dm6]	T	TT	2.246e^-4	0.868	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2L	7389894	2L_7389894_SNP [dm3] 2L_7389894_SNP [dm6]	G	T	2.259e^-4	0.868	SYNONYMOUS_CODING gudu
2L	8030792	2L_8030792_SNP [dm3] 2L_8030792_SNP [dm6]	T	C	2.283e^-4	0.868	UTR_5_PRIME Cka UPSTREAM Cka DOWNSTREAM baf INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10165866	3R_10165866_SNP [dm3] 3R_14340144_SNP [dm6]	G	T	2.289e^-4	0.868	INTRON NK7.1
2L	10181577	2L_10181577_SNP [dm3] 2L_10181577_SNP [dm6]	C	A	2.289e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	10181718	2L_10181718_SNP [dm3] 2L_10181718_SNP [dm6]	C	T	2.289e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181723	2L_10181723_SNP [dm3] 2L_10181723_SNP [dm6]	A	G	2.289e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181732	2L_10181732_SNP [dm3] 2L_10181732_SNP [dm6]	T	A	2.289e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	19608896	2L_19608896_SNP [dm3] 2L_19608896_SNP [dm6]	A	G	2.290e^-4	0.868	INTRON Lar
X	11116709	X_11116709_SNP [dm3] X_11222676_SNP [dm6]	T	C	2.298e^-4	0.868	UTR_3_PRIME CG44422 INTRON CG44422
X	8180606	X_8180606_SNP [dm3] X_8286573_SNP [dm6]	A	T	2.298e^-4	0.868	INTRON nAChRalpha3
3R	5374907	3R_5374907_DEL [dm3] 3R_9549185_DEL [dm6]	GG	G	2.309e^-4	0.868	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16302031	2R_16302031_SNP [dm3] 2R_20414526_SNP [dm6]	A	C	2.309e^-4	0.868	INTERGENIC
X	14741973	X_14741973_SNP [dm3] X_14847940_SNP [dm6]	G	A	2.317e^-4	0.868	SYNONYMOUS_CODING CG9522 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9606736	2L_9606736_SNP [dm3] 2L_9606736_SNP [dm6]	T	G	2.321e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	23333221	3R_23333221_SNP [dm3] 3R_27507499_SNP [dm6]	C	T	2.336e^-4	0.868	INTERGENIC
2L	10562571	2L_10562571_SNP [dm3] 2L_10562571_SNP [dm6]	A	G	2.345e^-4	0.868	INTRON Trim9
3L	10366069	3L_10366069_SNP [dm3] 3L_10372969_SNP [dm6]	C	T	2.352e^-4	0.868	INTERGENIC
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	2.360e^-4	0.868	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	7389023	2L_7389023_SNP [dm3] 2L_7389023_SNP [dm6]	T	C	2.367e^-4	0.868	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389026	2L_7389026_SNP [dm3] 2L_7389026_SNP [dm6]	C	T	2.367e^-4	0.868	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389300	2L_7389300_DEL [dm3] 2L_7389300_DEL [dm6]	GGCATTGGATAAAGTGCTTC...	A	2.367e^-4	0.868	INTRON gudu
X	4937732	X_4937732_SNP [dm3] X_5043699_SNP [dm6]	C	G	2.373e^-4	0.868	INTRON CR44833
X	4937865	X_4937865_SNP [dm3] X_5043832_SNP [dm6]	T	C	2.373e^-4	0.868	INTRON CR44833
2L	19533970	2L_19533970_SNP [dm3] 2L_19533970_SNP [dm6]	C	T	2.379e^-4	0.868	DOWNSTREAM CG10137 INTRON CG33116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	13413915	2L_13413915_SNP [dm3] 2L_13413915_SNP [dm6]	C	T	2.390e^-4	0.868	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3R	9955163	3R_9955163_SNP [dm3] 3R_14129441_SNP [dm6]	A	G	2.396e^-4	0.868	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20687356	2L_20687356_SNP [dm3] 2L_20687356_SNP [dm6]	G	A	2.432e^-4	0.868	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14905574	X_14905574_SNP [dm3] X_15011541_SNP [dm6]	C	T	2.440e^-4	0.868	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	19439560	2L_19439560_SNP [dm3] 2L_19439560_SNP [dm6]	C	A	2.460e^-4	0.868	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9513327	3L_9513327_SNP [dm3] 3L_9520227_SNP [dm6]	C	G	2.468e^-4	0.868	INTRON CG33700
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	2.483e^-4	0.868	INTRON dnc
2L	7380401	2L_7380401_SNP [dm3] 2L_7380401_SNP [dm6]	G	A	2.503e^-4	0.868	SYNONYMOUS_CODING ninaC
2R	10035311	2R_10035311_SNP [dm3] 2R_14147806_SNP [dm6]	C	A	2.515e^-4	0.868	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	7732217	X_7732217_SNP [dm3] X_7838184_SNP [dm6]	T	A	2.519e^-4	0.868	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	2.524e^-4	0.868	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4843704	3L_4843704_SNP [dm3] 3L_4843704_SNP [dm6]	C	A	2.529e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	2.531e^-4	0.868	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	2.531e^-4	0.868	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	13166374	3R_13166374_SNP [dm3] 3R_17340652_SNP [dm6]	T	C	2.538e^-4	0.868	INTRON beat-IIa
3R	13166376	3R_13166376_SNP [dm3] 3R_17340654_SNP [dm6]	A	G	2.538e^-4	0.868	INTRON beat-IIa
2L	4588587	2L_4588587_SNP [dm3] 2L_4588587_SNP [dm6]	G	A	2.538e^-4	0.868	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12817346	2L_12817346_INS [dm3] 2L_12817346_INS [dm6]	T	TATGTGT	2.540e^-4	0.868	UTR_3_PRIME kek1
3L	11184085	3L_11184085_SNP [dm3] 3L_11190985_SNP [dm6]	T	C	2.564e^-4	0.868	INTRON GlcAT-P
2R	12394311	2R_12394311_SNP [dm3] 2R_16506806_SNP [dm6]	C	T	2.582e^-4	0.868	INTRON Sema-2a
X	11506563	X_11506563_SNP [dm3] X_11612530_SNP [dm6]	T	C	2.587e^-4	0.868	NON_SYNONYMOUS_CODING CG1703 UPSTREAM CG2247	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6436061	3L_6436061_SNP [dm3] 3L_6442961_SNP [dm6]	G	C	2.595e^-4	0.868	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	3874495	3L_3874495_SNP [dm3] 3L_3874495_SNP [dm6]	T	C	2.601e^-4	0.868	INTERGENIC
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	2.603e^-4	0.868	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
2R	5897100	2R_5897100_SNP [dm3] 2R_10009595_SNP [dm6]	T	A	2.608e^-4	0.868	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi
2R	16945775	2R_16945775_SNP [dm3] 2R_21058270_SNP [dm6]	C	T	2.610e^-4	0.868	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5434784	2L_5434784_SNP [dm3] 2L_5434784_SNP [dm6]	T	C	2.615e^-4	0.868	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	5434804	2L_5434804_SNP [dm3] 2L_5434804_SNP [dm6]	A	G	2.615e^-4	0.868	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	5434806	2L_5434806_SNP [dm3] 2L_5434806_SNP [dm6]	A	G	2.615e^-4	0.868	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10437409	2R_10437409_SNP [dm3] 2R_14549904_SNP [dm6]	G	C	2.619e^-4	0.868	INTRON ttv
3L	9428857	3L_9428857_SNP [dm3] 3L_9435757_SNP [dm6]	C	T	2.653e^-4	0.868	UPSTREAM CG42526 INTRON MTF-1	TF binding site mE1_TFBS_cad
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	2.669e^-4	0.868	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	19487155	2R_19487155_SNP [dm3] 2R_23599632_SNP [dm6]	T	C	2.676e^-4	0.868	SYNONYMOUS_CODING CG42560 UTR_3_PRIME CG42559 DOWNSTREAM apt
2R	13745412	2R_13745412_SNP [dm3] 2R_17857907_SNP [dm6]	A	G	2.677e^-4	0.868	INTRON olf186-F
2R	13745441	2R_13745441_SNP [dm3] 2R_17857936_SNP [dm6]	T	A	2.677e^-4	0.868	INTRON olf186-F
2R	13745445	2R_13745445_SNP [dm3] 2R_17857940_SNP [dm6]	T	A	2.677e^-4	0.868	INTRON olf186-F
3L	11525598	3L_11525598_SNP [dm3] 3L_11532498_SNP [dm6]	G	T	2.683e^-4	0.868	INTRON Mob2
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	2.712e^-4	0.868	INTRON CG8861
X	7961514	X_7961514_SNP [dm3] X_8067481_SNP [dm6]	C	G	2.714e^-4	0.868	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16050178	3L_16050178_SNP [dm3] 3L_16057078_SNP [dm6]	T	A	2.726e^-4	0.868	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
3L	6097187	3L_6097187_DEL [dm3] 3L_6104087_DEL [dm6]	CTC	C	2.730e^-4	0.868	INTRON Ets65A	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13118125	3L_13118125_SNP [dm3] 3L_13125025_SNP [dm6]	G	C	2.747e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16427338	2R_16427338_SNP [dm3] 2R_20539833_SNP [dm6]	T	G	2.751e^-4	0.868	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16427344	2R_16427344_INS [dm3] 2R_20539839_INS [dm6]	T	TATATATATATATATATA...	2.751e^-4	0.868	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22328190	2L_22328190_SNP [dm3] 2L_22328190_SNP [dm6]	A	T	2.756e^-4	0.868	INTRON CG17018	transposable element FlyBase
2L	14075418	2L_14075418_SNP [dm3] 2L_14075418_SNP [dm6]	A	G	2.766e^-4	0.868	INTRON nAChRalpha5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14100089	2L_14100089_SNP [dm3] 2L_14100089_SNP [dm6]	T	C	2.767e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13927635	2L_13927635_SNP [dm3] 2L_13927635_SNP [dm6]	G	A	2.770e^-4	0.868	INTRON Ance-3
3L	15606719	3L_15606719_SNP [dm3] 3L_15613619_SNP [dm6]	T	C	2.774e^-4	0.868	SYNONYMOUS_CODING comm3 UPSTREAM CG13449
3L	1903336	3L_1903336_SNP [dm3] 3L_1903336_SNP [dm6]	G	A	2.777e^-4	0.868	INTRON CG1887
2L	19570448	2L_19570448_DEL [dm3] 2L_19570448_DEL [dm6]	GATG	G	2.782e^-4	0.868	UPSTREAM mir-2a-2 & 2 others INTRON spi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20686855	2L_20686855_SNP [dm3] 2L_20686855_SNP [dm6]	C	T	2.797e^-4	0.868	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad
2R	2432304	2R_2432304_SNP [dm3] 2R_6544799_SNP [dm6]	T	C	2.800e^-4	0.868	INTRON jing	TF binding site BDTNP1_TFBS_dl
3R	11234648	3R_11234648_SNP [dm3] 3R_15408926_SNP [dm6]	C	G	2.808e^-4	0.868	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19889488	2R_19889488_SNP [dm3] 2R_24001965_SNP [dm6]	A	T	2.871e^-4	0.868	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19551007	2R_19551007_SNP [dm3] 2R_23663484_SNP [dm6]	A	C	2.875e^-4	0.868	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5931309	2L_5931309_SNP [dm3] 2L_5931309_SNP [dm6]	T	C	2.875e^-4	0.868	INTRON dsf
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	2.900e^-4	0.868	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
3L	4418948	3L_4418948_SNP [dm3] 3L_4418948_SNP [dm6]	C	T	2.912e^-4	0.868	SYNONYMOUS_CODING DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1719584	2L_1719584_SNP [dm3] 2L_1719584_SNP [dm6]	T	C	2.918e^-4	0.868	INTRON Rim2
X	3222045	X_3222045_SNP [dm3] X_3328012_SNP [dm6]	A	T	2.931e^-4	0.868	INTRON CR44886 & 1 other
3R	2976678	3R_2976678_SNP [dm3] 3R_7150956_SNP [dm6]	C	T	2.952e^-4	0.868	UTR_5_PRIME gfzf UPSTREAM Sas-4 INTRON CG2656	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.958e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4106411	2L_4106411_SNP [dm3] 2L_4106411_SNP [dm6]	T	A	2.963e^-4	0.868	INTRON ed
X	11408411	X_11408411_SNP [dm3] X_11514378_SNP [dm6]	G	A	2.965e^-4	0.868	INTRON Drak
2L	12807199	2L_12807199_SNP [dm3] 2L_12807199_SNP [dm6]	C	T	2.972e^-4	0.868	DOWNSTREAM CR43818 INTERGENIC
2L	12807227	2L_12807227_SNP [dm3] 2L_12807227_SNP [dm6]	A	G	2.972e^-4	0.868	DOWNSTREAM CR43818 INTERGENIC
2R	17757736	2R_17757736_SNP [dm3] 2R_21870231_SNP [dm6]	G	T	2.972e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10755525	3L_10755525_SNP [dm3] 3L_10762425_SNP [dm6]	T	C	2.972e^-4	0.868	INTERGENIC
3L	7320583	3L_7320583_SNP [dm3] 3L_7327483_SNP [dm6]	G	A	2.991e^-4	0.868	SYNONYMOUS_CODING CG8602	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23398874	3R_23398874_DEL [dm3] 3R_27573152_DEL [dm6]	TGGGTACACTCGC...	T	3.008e^-4	0.868	INTRON wdb
2L	5434894	2L_5434894_SNP [dm3] 2L_5434894_SNP [dm6]	T	G	3.014e^-4	0.868	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_Kr
X	14944691	X_14944691_SNP [dm3] X_15050658_SNP [dm6]	C	G	3.017e^-4	0.868	NON_SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19722858	2R_19722858_SNP [dm3] 2R_23835335_SNP [dm6]	T	C	3.020e^-4	0.868	SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21377343	3L_21377343_SNP [dm3] 3L_21384243_SNP [dm6]	T	C	3.022e^-4	0.868	INTRON rgn	TF binding site mE1_TFBS_inv
X	8226987	X_8226987_SNP [dm3] X_8332954_SNP [dm6]	C	G	3.022e^-4	0.868	INTRON nAChRalpha3
3L	6317914	3L_6317914_SNP [dm3] 3L_6324814_SNP [dm6]	G	C	3.031e^-4	0.868	UPSTREAM Or65b INTERGENIC
2L	11940656	2L_11940656_SNP [dm3] 2L_11940656_SNP [dm6]	A	T	3.034e^-4	0.868	INTERGENIC
2L	8921717	2L_8921717_SNP [dm3] 2L_8921717_SNP [dm6]	A	G	3.068e^-4	0.868	INTRON CG34398	TF binding site mE1_TFBS_sbb
2L	6841546	2L_6841546_SNP [dm3] 2L_6841546_SNP [dm6]	A	G	3.076e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	3.093e^-4	0.868	INTRON Lar
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	3.098e^-4	0.868	INTRON fry	TF binding site mE1_TFBS_cad
2L	19569595	2L_19569595_SNP [dm3] 2L_19569595_SNP [dm6]	T	C	3.109e^-4	0.868	UPSTREAM mir-2a-2 DOWNSTREAM mir-2a-1 & 1 other INTRON spi
3L	13342181	3L_13342181_SNP [dm3] 3L_13349081_SNP [dm6]	A	T	3.114e^-4	0.868	UPSTREAM CG17687 INTERGENIC
3L	1031024	3L_1031024_SNP [dm3] 3L_1031024_SNP [dm6]	C	T	3.118e^-4	0.868	INTRON trio
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	3.120e^-4	0.868	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
3L	3506121	3L_3506121_SNP [dm3] 3L_3506121_SNP [dm6]	T	G	3.154e^-4	0.868	NON_SYNONYMOUS_CODING CG42324 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	3.154e^-4	0.868	INTERGENIC
3R	23499447	3R_23499447_SNP [dm3] 3R_27673725_SNP [dm6]	T	C	3.156e^-4	0.868	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3R	14598055	3R_14598055_SNP [dm3] 3R_18772333_SNP [dm6]	C	T	3.160e^-4	0.868	INTRON CG7720
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	3.165e^-4	0.868	UTR_3_PRIME CG32726 UPSTREAM CG15036
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	3.170e^-4	0.868	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	3.174e^-4	0.868	INTRON Elk
X	14708500	X_14708500_SNP [dm3] X_14814467_SNP [dm6]	A	G	3.179e^-4	0.868	INTRON rut
2R	27702	2R_27702_SNP [dm3] 2R_4140197_SNP [dm6]	C	T	3.181e^-4	0.868	INTERGENIC
2L	12807245	2L_12807245_SNP [dm3] 2L_12807245_SNP [dm6]	T	A	3.191e^-4	0.868	DOWNSTREAM CR43818 INTERGENIC
2R	10820197	2R_10820197_SNP [dm3] 2R_14932692_SNP [dm6]	T	A	3.200e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2L	8031070	2L_8031070_SNP [dm3] 2L_8031070_SNP [dm6]	T	G	3.204e^-4	0.868	UTR_5_PRIME Cka DOWNSTREAM baf INTRON CG7367 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16871593	X_16871593_SNP [dm3] X_16977560_SNP [dm6]	C	G	3.210e^-4	0.868	INTRON CG45002
3L	9194682	3L_9194682_SNP [dm3] 3L_9201582_SNP [dm6]	T	C	3.211e^-4	0.868	INTERGENIC
2L	1161236	2L_1161236_SNP [dm3] 2L_1161236_SNP [dm6]	G	A	3.221e^-4	0.868	INTRON CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15985409	X_15985409_SNP [dm3] X_16091376_SNP [dm6]	T	A	3.236e^-4	0.868	UTR_5_PRIME Tob	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13545568	X_13545568_SNP [dm3] X_13651535_SNP [dm6]	T	C	3.241e^-4	0.868	INTRON NFAT
3L	4796852	3L_4796852_SNP [dm3] 3L_4796852_SNP [dm6]	T	G	3.250e^-4	0.868	DOWNSTREAM RhoGEF64C INTERGENIC
3L	15320685	3L_15320685_SNP [dm3] 3L_15327585_SNP [dm6]	A	T	3.269e^-4	0.868	INTERGENIC
2L	12415429	2L_12415429_SNP [dm3] 2L_12415429_SNP [dm6]	A	T	3.274e^-4	0.868	INTRON vir-1
2L	12415444	2L_12415444_SNP [dm3] 2L_12415444_SNP [dm6]	C	T	3.274e^-4	0.868	INTRON vir-1
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	3.281e^-4	0.868	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	14615080	3R_14615080_SNP [dm3] 3R_18789358_SNP [dm6]	T	A	3.289e^-4	0.868	INTRON CG7720	TF binding site mE1_TFBS_inv
2R	8607984	2R_8607984_SNP [dm3] 2R_12720479_SNP [dm6]	T	G	3.320e^-4	0.868	INTRON CG42663
3L	5909680	3L_5909680_SNP [dm3] 3L_5916580_SNP [dm6]	T	C	3.329e^-4	0.868	INTRON CG13288
3L	14718287	3L_14718287_SNP [dm3] 3L_14725187_SNP [dm6]	G	A	3.330e^-4	0.868	INTRON ome
3L	1115985	3L_1115985_SNP [dm3] 3L_1115985_SNP [dm6]	T	C	3.337e^-4	0.868	INTERGENIC
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	3.344e^-4	0.868	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	6084492	2L_6084492_SNP [dm3] 2L_6084492_SNP [dm6]	G	C	3.364e^-4	0.868	INTRON Kr-h1	TF binding site mE1_TFBS_HSA
X	15422753	X_15422753_SNP [dm3] X_15528720_SNP [dm6]	T	C	3.367e^-4	0.868	INTRON Ac13E
X	18981177	X_18981177_DEL [dm3] X_19087144_DEL [dm6]	AGAATGCATTCCATGTA...	A	3.385e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7373182	2L_7373182_SNP [dm3] 2L_7373182_SNP [dm6]	A	T	3.394e^-4	0.868	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	4405811	3L_4405811_SNP [dm3] 3L_4405811_SNP [dm6]	T	C	3.405e^-4	0.868	NON_SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12131548	2R_12131548_SNP [dm3] 2R_16244043_SNP [dm6]	C	T	3.415e^-4	0.868	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_inv
3L	3504595	3L_3504595_SNP [dm3] 3L_3504595_SNP [dm6]	G	T	3.417e^-4	0.868	INTRON CG42324
2L	15732891	2L_15732891_SNP [dm3] 2L_15732891_SNP [dm6]	A	T	3.447e^-4	0.868	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7159379	2R_7159379_SNP [dm3] 2R_11271874_SNP [dm6]	A	T	3.473e^-4	0.868	INTRON Cpr47Ef
2R	7159396	2R_7159396_SNP [dm3] 2R_11271891_SNP [dm6]	A	C	3.473e^-4	0.868	INTRON Cpr47Ef
2R	2346665	2R_2346665_INS [dm3] 2R_6459160_INS [dm6]	T	TCAC	3.474e^-4	0.868	INTERGENIC	transposable element FlyBase
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	3.478e^-4	0.868	INTRON olf186-F
2R	2664589	2R_2664589_SNP [dm3] 2R_6777084_SNP [dm6]	T	C	3.480e^-4	0.868	UPSTREAM Epac INTRON Epac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14207180	3L_14207180_SNP [dm3] 3L_14214080_SNP [dm6]	G	A	3.480e^-4	0.868	INTRON nuf
3L	18123195	3L_18123195_SNP [dm3] 3L_18130095_SNP [dm6]	C	T	3.481e^-4	0.868	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
2R	16427367	2R_16427367_SNP [dm3] 2R_20539862_SNP [dm6]	T	G	3.484e^-4	0.868	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7659795	2L_7659795_SNP [dm3] 2L_7659795_SNP [dm6]	T	C	3.516e^-4	0.868	UPSTREAM Slob INTRON Slob	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18221084	3L_18221084_SNP [dm3] 3L_18227984_SNP [dm6]	T	G	3.531e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8025574	2L_8025574_SNP [dm3] 2L_8025574_SNP [dm6]	G	C	3.532e^-4	0.868	SYNONYMOUS_CODING Tg
2R	6224845	2R_6224845_SNP [dm3] 2R_10337340_SNP [dm6]	T	C	3.536e^-4	0.868	INTRON CG42732
2L	8705405	2L_8705405_SNP [dm3] 2L_8705405_SNP [dm6]	T	A	3.542e^-4	0.868	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_HSA
X	21931082	X_21931082_INS [dm3] X_22529246_INS [dm6]	T	TGT	3.558e^-4	0.868	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA
3R	5091823	3R_5091823_SNP [dm3] 3R_9266101_SNP [dm6]	T	A	3.579e^-4	0.868	UPSTREAM Vps16A INTRON Aats-trp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8321056	3L_8321056_INS [dm3] 3L_8327956_INS [dm6]	C	CTC	3.588e^-4	0.868	UTR_3_PRIME CG34461 UPSTREAM CG34462 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	3.591e^-4	0.868	INTERGENIC
3R	15200505	3R_15200505_SNP [dm3] 3R_19374783_SNP [dm6]	C	A	3.592e^-4	0.868	UTR_5_PRIME CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	9489982	2L_9489982_SNP [dm3] 2L_9489982_SNP [dm6]	C	A	3.611e^-4	0.868	INTERGENIC
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	3.611e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	3.611e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320993	X_11320993_SNP [dm3] X_11426960_SNP [dm6]	G	A	3.611e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	3.611e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16658080	3L_16658080_DEL [dm3] 3L_16664980_DEL [dm6]	TT	T	3.612e^-4	0.868	INTRON Galphaf
3L	1360120	3L_1360120_SNP [dm3] 3L_1360120_SNP [dm6]	C	G	3.617e^-4	0.868	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10326926	2L_10326926_SNP [dm3] 2L_10326926_SNP [dm6]	T	C	3.620e^-4	0.868	SYNONYMOUS_CODING RnrL	TF binding site mE1_TFBS_sens
2R	20409194	2R_20409194_SNP [dm3] 2R_24521671_SNP [dm6]	G	T	3.620e^-4	0.868	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4937015	X_4937015_SNP [dm3] X_5042982_SNP [dm6]	A	T	3.621e^-4	0.868	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5967063	X_5967063_SNP [dm3] X_6073030_SNP [dm6]	G	T	3.631e^-4	0.868	UPSTREAM Tsp5D INTRON Tsp5D
X	6534899	X_6534899_SNP [dm3] X_6640866_SNP [dm6]	T	C	3.634e^-4	0.868	INTRON pigs
3L	708682	3L_708682_SNP [dm3] 3L_708682_SNP [dm6]	A	T	3.635e^-4	0.868	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	14274726	2R_14274726_SNP [dm3] 2R_18387221_SNP [dm6]	A	T	3.653e^-4	0.868	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
2L	14445460	2L_14445460_SNP [dm3] 2L_14445460_SNP [dm6]	T	C	3.655e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19696330	2L_19696330_SNP [dm3] 2L_19696330_SNP [dm6]	T	C	3.666e^-4	0.868	INTRON Lar
3L	4410440	3L_4410440_SNP [dm3] 3L_4410440_SNP [dm6]	A	T	3.672e^-4	0.868	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	1719382	2L_1719382_INS [dm3] 2L_1719382_INS [dm6]	G	GG	3.682e^-4	0.868	INTRON Rim2
2L	5514506	2L_5514506_SNP [dm3] 2L_5514506_SNP [dm6]	T	C	3.684e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10268293	3L_10268293_SNP [dm3] 3L_10275193_SNP [dm6]	G	A	3.685e^-4	0.868	DOWNSTREAM Or67d INTERGENIC
3L	10268305	3L_10268305_SNP [dm3] 3L_10275205_SNP [dm6]	G	C	3.685e^-4	0.868	DOWNSTREAM Or67d INTERGENIC
2R	14116219	2R_14116219_SNP [dm3] 2R_18228714_SNP [dm6]	C	A	3.687e^-4	0.868	DOWNSTREAM CR45310 EXON CR45311
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	3.693e^-4	0.868	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
3L	9838034	3L_9838034_SNP [dm3] 3L_9844934_SNP [dm6]	T	G	3.713e^-4	0.868	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18981202	X_18981202_SNP [dm3] X_19087169_SNP [dm6]	A	G	3.714e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16571309	2R_16571309_SNP [dm3] 2R_20683804_SNP [dm6]	G	C	3.717e^-4	0.868	INTERGENIC
X	11320962	X_11320962_DEL [dm3] X_11426929_DEL [dm6]	TAA	T	3.718e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320968	X_11320968_DEL [dm3] X_11426935_DEL [dm6]	AATCTAATTAA...	CG	3.718e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19731432	2R_19731432_SNP [dm3] 2R_23843909_SNP [dm6]	G	A	3.725e^-4	0.868	SYNONYMOUS_CODING Snap29 UPSTREAM shu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4674884	2R_4674884_SNP [dm3] 2R_8787379_SNP [dm6]	A	G	3.725e^-4	0.868	INTERGENIC
3L	9815093	3L_9815093_SNP [dm3] 3L_9821993_SNP [dm6]	C	G	3.736e^-4	0.868	INTRON CG43897
2R	12832291	2R_12832291_INS [dm3] 2R_16944786_INS [dm6]	A	ACCATA	3.750e^-4	0.868	UTR_3_PRIME Pkc53E UPSTREAM CG15614
2L	5434787	2L_5434787_SNP [dm3] 2L_5434787_SNP [dm6]	T	A	3.759e^-4	0.868	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	12527304	2L_12527304_SNP [dm3] 2L_12527304_SNP [dm6]	G	T	3.759e^-4	0.868	INTRON bun
2R	6224869	2R_6224869_SNP [dm3] 2R_10337364_SNP [dm6]	T	A	3.767e^-4	0.868	INTRON CG42732
2R	1605496	2R_1605496_SNP [dm3] 2R_5717991_SNP [dm6]	C	T	3.774e^-4	0.868	INTRON ap	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	16148329	X_16148329_SNP [dm3] X_16254296_SNP [dm6]	T	G	3.778e^-4	0.868	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	41405	2L_41405_SNP [dm3] 2L_41405_SNP [dm6]	T	A	3.781e^-4	0.868	INTRON Cda5
2L	19406520	2L_19406520_SNP [dm3] 2L_19406520_SNP [dm6]	G	A	3.782e^-4	0.868	INTRON Pax
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	3.782e^-4	0.868	UTR_3_PRIME psh UPSTREAM Hayan
2R	18937350	2R_18937350_SNP [dm3] 2R_23049827_SNP [dm6]	G	T	3.797e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20198450	3R_20198450_SNP [dm3] 3R_24372728_SNP [dm6]	T	A	3.798e^-4	0.868	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG17781	TF binding site mE1_TFBS_chinmo
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	3.806e^-4	0.868	INTRON vir-1
X	7961274	X_7961274_SNP [dm3] X_8067241_SNP [dm6]	T	A	3.810e^-4	0.868	SYNONYMOUS_CODING mys
3L	12411288	3L_12411288_SNP [dm3] 3L_12418188_SNP [dm6]	G	C	3.823e^-4	0.868	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	19439559	2L_19439559_SNP [dm3] 2L_19439559_SNP [dm6]	T	C	3.828e^-4	0.868	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	881603	2L_881603_SNP [dm3] 2L_881603_SNP [dm6]	A	G	3.829e^-4	0.868	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	22090826	2L_22090826_SNP [dm3] 2L_22090826_SNP [dm6]	G	T	3.838e^-4	0.868	INTERGENIC	transposable element FlyBase
3L	12724658	3L_12724658_SNP [dm3] 3L_12731558_SNP [dm6]	C	G	3.854e^-4	0.868	INTERGENIC
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	3.866e^-4	0.868	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	3.866e^-4	0.868	INTRON dsx
2L	7575321	2L_7575321_SNP [dm3] 2L_7575321_SNP [dm6]	A	T	3.880e^-4	0.868	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
3L	3732728	3L_3732728_SNP [dm3] 3L_3732728_SNP [dm6]	A	G	3.905e^-4	0.868	INTRON CG32264
3R	5267763	3R_5267763_SNP [dm3] 3R_9442041_SNP [dm6]	T	A	3.938e^-4	0.868	INTRON ps
3L	5649252	3L_5649252_SNP [dm3] 3L_5656152_SNP [dm6]	C	T	3.941e^-4	0.868	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	20880990	X_20880990_DEL [dm3] X_21009963_DEL [dm6]	AA	A	3.959e^-4	0.868	INTERGENIC
X	5966910	X_5966910_SNP [dm3] X_6072877_SNP [dm6]	T	C	3.978e^-4	0.868	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
2R	1715544	2R_1715544_SNP [dm3] 2R_5828039_SNP [dm6]	C	T	3.988e^-4	0.868	INTRON dpr12
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	3.995e^-4	0.868	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11337537	3L_11337537_DEL [dm3] 3L_11344437_DEL [dm6]	TT	T	3.996e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	4.001e^-4	0.868	INTRON CG7720
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	4.010e^-4	0.868	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20335700	2L_20335700_SNP [dm3] 2L_20335700_SNP [dm6]	G	A	4.020e^-4	0.868	INTRON spir
X	18849538	X_18849538_SNP [dm3] X_18955505_SNP [dm6]	A	G	4.022e^-4	0.868	INTRON CG43759
2R	18504707	2R_18504707_DEL [dm3] 2R_22617202_DEL [dm6]	CC	C	4.024e^-4	0.868	INTRON CG33143	TF binding site mE1_TFBS_cad
2L	12527657	2L_12527657_SNP [dm3] 2L_12527657_SNP [dm6]	T	A	4.041e^-4	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	11701064	X_11701064_SNP [dm3] X_11807031_SNP [dm6]	G	A	4.055e^-4	0.868	UTR_5_PRIME Hsc70-3 UPSTREAM Hsc70-3	TF binding site BDTNP1_TFBS_dl
3R	10196529	3R_10196529_SNP [dm3] 3R_14370807_SNP [dm6]	G	C	4.065e^-4	0.868	DOWNSTREAM snoRNA:Me18S-G1189 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19733116	2L_19733116_SNP [dm3] 2L_19733116_SNP [dm6]	C	G	4.067e^-4	0.868	INTRON CG10462
X	15026715	X_15026715_SNP [dm3] X_15132682_SNP [dm6]	C	T	4.082e^-4	0.868	INTRON drd
2L	16108573	2L_16108573_SNP [dm3] 2L_16108573_SNP [dm6]	T	C	4.111e^-4	0.868	INTERGENIC
3R	15049813	3R_15049813_SNP [dm3] 3R_19224091_SNP [dm6]	A	G	4.113e^-4	0.868	INTRON vib
3R	16649938	3R_16649938_SNP [dm3] 3R_20824216_SNP [dm6]	C	G	4.119e^-4	0.868	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16649958	3R_16649958_SNP [dm3] 3R_20824236_SNP [dm6]	A	G	4.119e^-4	0.868	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13413897	2L_13413897_SNP [dm3] 2L_13413897_SNP [dm6]	T	C	4.147e^-4	0.868	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3R	13470734	3R_13470734_SNP [dm3] 3R_17645012_SNP [dm6]	T	C	4.162e^-4	0.868	NON_SYNONYMOUS_CODING CG43175 UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568	TF binding site mE1_TFBS_cad
2R	16831281	2R_16831281_SNP [dm3] 2R_20943776_SNP [dm6]	C	T	4.165e^-4	0.868	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16124956	2L_16124956_SNP [dm3] 2L_16124956_SNP [dm6]	G	A	4.169e^-4	0.868	INTERGENIC
3R	26909529	3R_26909529_SNP [dm3] 3R_31083807_SNP [dm6]	A	T	4.172e^-4	0.868	DOWNSTREAM Sox100B INTERGENIC
2R	18282385	2R_18282385_SNP [dm3] 2R_22394880_SNP [dm6]	T	A	4.180e^-4	0.868	DOWNSTREAM CG13506 INTRON babos
3R	13156329	3R_13156329_SNP [dm3] 3R_17330607_SNP [dm6]	C	A	4.185e^-4	0.868	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4591737	2L_4591737_SNP [dm3] 2L_4591737_SNP [dm6]	A	G	4.196e^-4	0.868	UTR_5_PRIME dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11320860	X_11320860_SNP [dm3] X_11426827_SNP [dm6]	A	T	4.216e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7389018	2L_7389018_SNP [dm3] 2L_7389018_SNP [dm6]	T	C	4.219e^-4	0.868	SYNONYMOUS_CODING gudu UPSTREAM CG5149
3L	767345	3L_767345_SNP [dm3] 3L_767345_SNP [dm6]	T	A	4.227e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8715897	2L_8715897_SNP [dm3] 2L_8715897_SNP [dm6]	C	T	4.231e^-4	0.868	INTRON raw
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	4.264e^-4	0.868	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3R	9955988	3R_9955988_SNP [dm3] 3R_14130266_SNP [dm6]	A	G	4.307e^-4	0.868	DOWNSTREAM CG14356 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	11233087	3L_11233087_SNP [dm3] 3L_11239987_SNP [dm6]	G	T	4.307e^-4	0.868	INTERGENIC
X	14942469	X_14942469_SNP [dm3] X_15048436_SNP [dm6]	G	A	4.308e^-4	0.868	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
2R	6224784	2R_6224784_SNP [dm3] 2R_10337279_SNP [dm6]	T	C	4.312e^-4	0.868	INTRON CG42732	TF binding site mE1_TFBS_cad
2R	6224786	2R_6224786_SNP [dm3] 2R_10337281_SNP [dm6]	C	A	4.312e^-4	0.868	INTRON CG42732	TF binding site mE1_TFBS_cad
2R	6224813	2R_6224813_SNP [dm3] 2R_10337308_SNP [dm6]	C	A	4.312e^-4	0.868	INTRON CG42732
2R	6225334	2R_6225334_SNP [dm3] 2R_10337829_SNP [dm6]	G	T	4.312e^-4	0.868	INTRON CG42732
X	11408373	X_11408373_SNP [dm3] X_11514340_SNP [dm6]	C	G	4.321e^-4	0.868	INTRON Drak
2L	17457632	2L_17457632_SNP [dm3] 2L_17457632_SNP [dm6]	G	T	4.332e^-4	0.868	SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2L	17457657	2L_17457657_SNP [dm3] 2L_17457657_SNP [dm6]	A	G	4.332e^-4	0.868	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
X	15337294	X_15337294_SNP [dm3] X_15443261_SNP [dm6]	T	G	4.348e^-4	0.868	INTERGENIC
X	14458770	X_14458770_SNP [dm3] X_14564737_SNP [dm6]	G	A	4.367e^-4	0.868	INTERGENIC
3L	9513355	3L_9513355_SNP [dm3] 3L_9520255_SNP [dm6]	C	G	4.373e^-4	0.868	INTRON CG33700
X	14583209	X_14583209_SNP [dm3] X_14689176_SNP [dm6]	G	T	4.379e^-4	0.868	UTR_3_PRIME NetB
3R	14739112	3R_14739112_SNP [dm3] 3R_18913390_SNP [dm6]	A	C	4.384e^-4	0.868	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	10458241	2R_10458241_SNP [dm3] 2R_14570736_SNP [dm6]	C	T	4.388e^-4	0.868	DOWNSTREAM LamC INTRON ttv
3L	6097247	3L_6097247_DEL [dm3] 3L_6104147_DEL [dm6]	AGAAAGAAATTATAATT...	A	4.393e^-4	0.868	INTRON Ets65A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16114795	X_16114795_SNP [dm3] X_16220762_SNP [dm6]	A	C	4.398e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9166630	3R_9166630_SNP [dm3] 3R_13340908_SNP [dm6]	T	C	4.398e^-4	0.868	INTRON PK2-R1
3R	14616574	3R_14616574_SNP [dm3] 3R_18790852_SNP [dm6]	G	T	4.399e^-4	0.868	INTRON CG7720
2L	10181695	2L_10181695_SNP [dm3] 2L_10181695_SNP [dm6]	C	A	4.407e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181696	2L_10181696_SNP [dm3] 2L_10181696_SNP [dm6]	A	C	4.407e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	12384815	2L_12384815_SNP [dm3] 2L_12384815_SNP [dm6]	C	T	4.407e^-4	0.868	INTRON bru-2
3R	17866211	3R_17866211_SNP [dm3] 3R_22040489_SNP [dm6]	A	C	4.414e^-4	0.868	INTERGENIC
3L	4386145	3L_4386145_SNP [dm3] 3L_4386145_SNP [dm6]	G	A	4.414e^-4	0.868	INTRON slow
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	4.417e^-4	0.868	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	3096331	3L_3096331_SNP [dm3] 3L_3096331_SNP [dm6]	A	T	4.418e^-4	0.868	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5511534	2L_5511534_SNP [dm3] 2L_5511534_SNP [dm6]	T	A	4.428e^-4	0.868	INTERGENIC
3L	4796795	3L_4796795_SNP [dm3] 3L_4796795_SNP [dm6]	T	C	4.433e^-4	0.868	DOWNSTREAM RhoGEF64C INTERGENIC
2L	12527344	2L_12527344_SNP [dm3] 2L_12527344_SNP [dm6]	C	A	4.435e^-4	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	12541103	X_12541103_SNP [dm3] X_12647070_SNP [dm6]	G	A	4.438e^-4	0.868	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6337871	X_6337871_SNP [dm3] X_6443838_SNP [dm6]	T	G	4.438e^-4	0.868	INTRON CG42340
3L	13342187	3L_13342187_SNP [dm3] 3L_13349087_SNP [dm6]	C	T	4.445e^-4	0.868	UPSTREAM CG17687 INTERGENIC
3R	25547001	3R_25547001_SNP [dm3] 3R_29721279_SNP [dm6]	C	T	4.448e^-4	0.868	SYNONYMOUS_CODING CG15506
3L	14781552	3L_14781552_SNP [dm3] 3L_14788452_SNP [dm6]	T	G	4.457e^-4	0.868	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24427738	3R_24427738_SNP [dm3] 3R_28602016_SNP [dm6]	A	T	4.471e^-4	0.868	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 1 other INTRON Hrb98DE EXON snoRNA:Psi28S-3405b
3L	18221087	3L_18221087_SNP [dm3] 3L_18227987_SNP [dm6]	T	C	4.495e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4317869	2L_4317869_SNP [dm3] 2L_4317869_SNP [dm6]	A	T	4.495e^-4	0.868	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4182643	2R_4182643_SNP [dm3] 2R_8295138_SNP [dm6]	C	T	4.496e^-4	0.868	INTERGENIC
X	596110	X_596110_SNP [dm3] X_702077_SNP [dm6]	T	A	4.502e^-4	0.868	INTRON sdk
X	610269	X_610269_SNP [dm3] X_716236_SNP [dm6]	G	A	4.502e^-4	0.868	INTRON sdk
3L	21387508	3L_21387508_SNP [dm3] 3L_21394408_SNP [dm6]	T	A	4.506e^-4	0.868	INTRON rgn
3L	14850828	3L_14850828_SNP [dm3] 3L_14857728_SNP [dm6]	G	T	4.520e^-4	0.868	INTRON CG17839
3L	4405706	3L_4405706_SNP [dm3] 3L_4405706_SNP [dm6]	C	T	4.542e^-4	0.868	DOWNSTREAM Syx17 INTRON CG15019	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19618853	X_19618853_SNP [dm3] X_19724820_SNP [dm6]	G	A	4.558e^-4	0.868	SYNONYMOUS_CODING CG12531	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	4.579e^-4	0.868	INTRON CG12207
X	19520853	X_19520853_SNP [dm3] X_19626820_SNP [dm6]	C	T	4.583e^-4	0.868	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
X	596387	X_596387_SNP [dm3] X_702354_SNP [dm6]	A	G	4.592e^-4	0.868	INTRON sdk	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	18934539	X_18934539_SNP [dm3] X_19040506_SNP [dm6]	G	C	4.599e^-4	0.868	INTERGENIC
2L	3388307	2L_3388307_SNP [dm3] 2L_3388307_SNP [dm6]	C	A	4.601e^-4	0.868	UPSTREAM Sfp23F INTRON CG42460
2L	16798719	2L_16798719_SNP [dm3] 2L_16798719_SNP [dm6]	T	G	4.606e^-4	0.868	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
3R	25638254	3R_25638254_SNP [dm3] 3R_29812532_SNP [dm6]	A	G	4.607e^-4	0.868	INTRON ca	TF binding site mE1_TFBS_chinmo
2L	7091248	2L_7091248_SNP [dm3] 2L_7091248_SNP [dm6]	A	T	4.616e^-4	0.868	INTERGENIC
2L	19129461	2L_19129461_INS [dm3] 2L_19129461_INS [dm6]	A	AAAGA	4.626e^-4	0.868	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18144487	2R_18144487_SNP [dm3] 2R_22256982_SNP [dm6]	A	G	4.626e^-4	0.868	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18745569	2L_18745569_SNP [dm3] 2L_18745569_SNP [dm6]	G	A	4.635e^-4	0.868	INTERGENIC
3L	12411303	3L_12411303_SNP [dm3] 3L_12418203_SNP [dm6]	A	T	4.641e^-4	0.868	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	21382353	3R_21382353_SNP [dm3] 3R_25556631_SNP [dm6]	C	T	4.658e^-4	0.868	INTRON msi
2L	12730685	2L_12730685_SNP [dm3] 2L_12730685_SNP [dm6]	G	C	4.675e^-4	0.868	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2623136	2L_2623136_SNP [dm3] 2L_2623136_SNP [dm6]	T	A	4.708e^-4	0.868	INTERGENIC
2L	14952322	2L_14952322_SNP [dm3] 2L_14952322_SNP [dm6]	T	G	4.714e^-4	0.868	INTRON CG42313
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	4.727e^-4	0.868	INTRON CG15270
X	15153535	X_15153535_SNP [dm3] X_15259502_SNP [dm6]	T	A	4.739e^-4	0.868	INTERGENIC
2L	12415091	2L_12415091_SNP [dm3] 2L_12415091_SNP [dm6]	A	G	4.744e^-4	0.868	INTRON vir-1
2L	13925848	2L_13925848_DEL [dm3] 2L_13925848_DEL [dm6]	GACCGT	G	4.765e^-4	0.868	INTRON Ance-3
3R	24820064	3R_24820064_SNP [dm3] 3R_28994342_SNP [dm6]	A	C	4.802e^-4	0.868	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8986584	2L_8986584_SNP [dm3] 2L_8986584_SNP [dm6]	G	A	4.808e^-4	0.868	INTRON rost
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	4.809e^-4	0.868	INTERGENIC
2L	56423	2L_56423_SNP [dm3] 2L_56423_SNP [dm6]	C	T	4.813e^-4	0.868	INTRON Cda5
2L	8232627	2L_8232627_SNP [dm3] 2L_8232627_SNP [dm6]	C	T	4.817e^-4	0.868	INTRON Pvr
2L	17247765	2L_17247765_SNP [dm3] 2L_17247765_SNP [dm6]	T	G	4.824e^-4	0.868	DOWNSTREAM CR44395 INTRON beat-IIIc
3L	9003178	3L_9003178_SNP [dm3] 3L_9010078_SNP [dm6]	G	T	4.833e^-4	0.868	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11940370	2L_11940370_SNP [dm3] 2L_11940370_SNP [dm6]	G	A	4.833e^-4	0.868	INTERGENIC
2R	10344067	2R_10344067_SNP [dm3] 2R_14456562_SNP [dm6]	G	C	4.839e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344070	2R_10344070_SNP [dm3] 2R_14456565_SNP [dm6]	G	C	4.839e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344071	2R_10344071_INS [dm3] 2R_14456566_INS [dm6]	A	ACT	4.839e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344131	2R_10344131_SNP [dm3] 2R_14456626_SNP [dm6]	A	G	4.839e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344148	2R_10344148_SNP [dm3] 2R_14456643_SNP [dm6]	C	T	4.839e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16180619	2L_16180619_SNP [dm3] 2L_16180619_SNP [dm6]	G	A	4.852e^-4	0.868	INTRON Ca-alpha1D
2L	4860143	2L_4860143_SNP [dm3] 2L_4860143_SNP [dm6]	A	C	4.853e^-4	0.868	INTRON pog
2L	19645671	2L_19645671_SNP [dm3] 2L_19645671_SNP [dm6]	G	A	4.854e^-4	0.868	INTRON Lar
2L	19645704	2L_19645704_SNP [dm3] 2L_19645704_SNP [dm6]	A	C	4.854e^-4	0.868	INTRON Lar
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	4.860e^-4	0.868	INTRON beat-Ic
X	11408422	X_11408422_SNP [dm3] X_11514389_SNP [dm6]	T	A	4.881e^-4	0.868	INTRON Drak
3R	14389510	3R_14389510_SNP [dm3] 3R_18563788_SNP [dm6]	C	T	4.888e^-4	0.868	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	12347433	2R_12347433_SNP [dm3] 2R_16459928_SNP [dm6]	G	A	4.891e^-4	0.868	INTERGENIC
3L	11057869	3L_11057869_SNP [dm3] 3L_11064769_SNP [dm6]	C	T	4.905e^-4	0.868	UTR_5_PRIME CG32075 UPSTREAM SuUR & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7670229	2R_7670229_SNP [dm3] 2R_11782724_SNP [dm6]	C	T	4.909e^-4	0.868	INTRON ths
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	4.914e^-4	0.868	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2L	1432378	2L_1432378_SNP [dm3] 2L_1432378_SNP [dm6]	G	A	4.928e^-4	0.868	UPSTREAM snRNA:U3:22A INTERGENIC
3L	19430066	3L_19430066_SNP [dm3] 3L_19436966_SNP [dm6]	C	T	4.928e^-4	0.868	INTERGENIC
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	4.943e^-4	0.868	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
3R	26305699	3R_26305699_SNP [dm3] 3R_30479977_SNP [dm6]	T	A	4.962e^-4	0.868	INTRON PH4alphaEFB
2L	19853060	2L_19853060_SNP [dm3] 2L_19853060_SNP [dm6]	C	T	4.971e^-4	0.868	INTRON sick
2L	19572534	2L_19572534_DEL [dm3] 2L_19572534_DEL [dm6]	GGG	G	4.979e^-4	0.868	UTR_5_PRIME spi INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19572836	2L_19572836_SNP [dm3] 2L_19572836_SNP [dm6]	A	T	4.979e^-4	0.868	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14618873	3L_14618873_SNP [dm3] 3L_14625773_SNP [dm6]	G	A	4.992e^-4	0.868	INTRON CG9628	TF binding site BDTNP1_TFBS_z
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	4.997e^-4	0.868	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	605534	X_605534_SNP [dm3] X_711501_SNP [dm6]	A	G	5.020e^-4	0.868	INTRON sdk
2R	15877093	2R_15877093_SNP [dm3] 2R_19989588_SNP [dm6]	C	T	5.026e^-4	0.868	INTERGENIC
2R	18543468	2R_18543468_SNP [dm3] 2R_22655963_SNP [dm6]	T	C	5.031e^-4	0.868	SYNONYMOUS_CODING CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 DOWNSTREAM CG43325 EXON CR45268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13412263	2L_13412263_SNP [dm3] 2L_13412263_SNP [dm6]	T	A	5.046e^-4	0.868	UPSTREAM CG16848 & 1 other INTERGENIC
2R	13745318	2R_13745318_INS [dm3] 2R_17857813_INS [dm6]	T	TTGATCATATCTCCT...	5.048e^-4	0.868	INTRON olf186-F
2L	1786822	2L_1786822_SNP [dm3] 2L_1786822_SNP [dm6]	C	T	5.064e^-4	0.868	INTERGENIC
X	5001451	X_5001451_DEL [dm3] X_5107418_DEL [dm6]	CAAAAT	A	5.065e^-4	0.868	INTRON rg & 1 other
3L	14204912	3L_14204912_SNP [dm3] 3L_14211812_SNP [dm6]	A	G	5.069e^-4	0.868	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2R	11220158	2R_11220158_SNP [dm3] 2R_15332653_SNP [dm6]	T	C	5.076e^-4	0.868	INTRON Hr51
2L	12906845	2L_12906845_SNP [dm3] 2L_12906845_SNP [dm6]	A	G	5.085e^-4	0.868	INTERGENIC
X	11117721	X_11117721_SNP [dm3] X_11223688_SNP [dm6]	A	G	5.093e^-4	0.868	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
X	4966354	X_4966354_SNP [dm3] X_5072321_SNP [dm6]	G	A	5.106e^-4	0.868	UTR_3_PRIME CG32767
2L	7333841	2L_7333841_SNP [dm3] 2L_7333841_SNP [dm6]	G	A	5.118e^-4	0.868	UTR_5_PRIME Wnt6
2L	19123022	2L_19123022_DEL [dm3] 2L_19123022_DEL [dm6]	TG	T	5.126e^-4	0.868	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	19123063	2L_19123063_SNP [dm3] 2L_19123063_SNP [dm6]	C	G	5.126e^-4	0.868	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
X	743216	X_743216_SNP [dm3] X_849183_SNP [dm6]	C	T	5.129e^-4	0.868	INTRON CG43867	TF binding site mE1_TFBS_HSA
3L	6292678	3L_6292678_SNP [dm3] 3L_6299578_SNP [dm6]	T	A	5.131e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6788658	3L_6788658_SNP [dm3] 3L_6795558_SNP [dm6]	T	C	5.131e^-4	0.868	DOWNSTREAM vvl INTERGENIC
3L	6788736	3L_6788736_SNP [dm3] 3L_6795636_SNP [dm6]	T	C	5.131e^-4	0.868	DOWNSTREAM vvl INTERGENIC
2L	12807255	2L_12807255_SNP [dm3] 2L_12807255_SNP [dm6]	A	G	5.131e^-4	0.868	DOWNSTREAM CR43818 INTERGENIC
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	5.136e^-4	0.868	UTR_5_PRIME CG1718
X	21171394	X_21171394_SNP [dm3] X_21300367_SNP [dm6]	C	A	5.136e^-4	0.868	UTR_5_PRIME CG1718
X	5966984	X_5966984_DEL [dm3] X_6072951_DEL [dm6]	AAATA	A	5.140e^-4	0.868	UTR_5_PRIME Tsp5D INTRON Tsp5D
2L	19844206	2L_19844206_SNP [dm3] 2L_19844206_SNP [dm6]	C	T	5.147e^-4	0.868	INTRON sick
2L	19844207	2L_19844207_SNP [dm3] 2L_19844207_SNP [dm6]	T	C	5.147e^-4	0.868	INTRON sick
2L	16121406	2L_16121406_SNP [dm3] 2L_16121406_SNP [dm6]	G	A	5.152e^-4	0.868	INTERGENIC
2L	13868114	2L_13868114_SNP [dm3] 2L_13868114_SNP [dm6]	G	T	5.179e^-4	0.868	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8485661	3L_8485661_DEL [dm3] 3L_8492561_DEL [dm6]	GG	G	5.180e^-4	0.868	INTRON CG43163
3L	13709205	3L_13709205_SNP [dm3] 3L_13716105_SNP [dm6]	A	G	5.192e^-4	0.868	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3316559	3L_3316559_SNP [dm3] 3L_3316559_SNP [dm6]	T	G	5.192e^-4	0.868	UPSTREAM Drsl5 DOWNSTREAM Drsl4 INTERGENIC
X	9505336	X_9505336_SNP [dm3] X_9611303_SNP [dm6]	C	T	5.209e^-4	0.868	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	5.219e^-4	0.868	INTERGENIC
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	5.219e^-4	0.868	INTERGENIC
3L	14204021	3L_14204021_SNP [dm3] 3L_14210921_SNP [dm6]	T	G	5.219e^-4	0.868	INTRON nuf	TF binding site BDTNP1_TFBS_dl
2L	19554118	2L_19554118_SNP [dm3] 2L_19554118_SNP [dm6]	G	A	5.238e^-4	0.868	SYNONYMOUS_CODING Tep4
3L	18198369	3L_18198369_SNP [dm3] 3L_18205269_SNP [dm6]	C	G	5.244e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	596112	X_596112_SNP [dm3] X_702079_SNP [dm6]	C	T	5.251e^-4	0.868	INTRON sdk
2R	3078428	2R_3078428_SNP [dm3] 2R_7190923_SNP [dm6]	T	C	5.264e^-4	0.868	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	5.264e^-4	0.868	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	13342242	3L_13342242_SNP [dm3] 3L_13349142_SNP [dm6]	C	T	5.265e^-4	0.868	UPSTREAM CG17687 INTERGENIC
2L	10496105	2L_10496105_SNP [dm3] 2L_10496105_SNP [dm6]	A	G	5.274e^-4	0.868	INTRON Myo31DF
X	19600198	X_19600198_SNP [dm3] X_19706165_SNP [dm6]	T	C	5.286e^-4	0.868	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
2R	17761515	2R_17761515_SNP [dm3] 2R_21874010_SNP [dm6]	C	G	5.287e^-4	0.868	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11337498	3L_11337498_SNP [dm3] 3L_11344398_SNP [dm6]	T	A	5.287e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11337502	3L_11337502_SNP [dm3] 3L_11344402_SNP [dm6]	A	T	5.287e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7207735	3L_7207735_SNP [dm3] 3L_7214635_SNP [dm6]	G	A	5.287e^-4	0.868	INTERGENIC
3L	14161768	3L_14161768_SNP [dm3] 3L_14168668_SNP [dm6]	A	C	5.294e^-4	0.868	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5826670	3L_5826670_INS [dm3] 3L_5833570_INS [dm6]	G	GTAATAAAATATTATTG...	5.297e^-4	0.868	INTRON vn	TF binding site mE1_TFBS_HSA
2L	7337049	2L_7337049_DEL [dm3] 2L_7337049_DEL [dm6]	TT	T	5.303e^-4	0.868	INTRON Wnt6
2L	7337056	2L_7337056_DEL [dm3] 2L_7337056_DEL [dm6]	GGGTCCGGAAATAGCGAAAA...	T	5.303e^-4	0.868	INTRON Wnt6
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	5.303e^-4	0.868	INTRON Wnt6
2L	7337418	2L_7337418_SNP [dm3] 2L_7337418_SNP [dm6]	G	T	5.303e^-4	0.868	INTRON Wnt6
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	5.303e^-4	0.868	INTRON Wnt6
2L	7339170	2L_7339170_SNP [dm3] 2L_7339170_SNP [dm6]	A	G	5.303e^-4	0.868	INTRON Wnt6
2L	7339406	2L_7339406_SNP [dm3] 2L_7339406_SNP [dm6]	C	T	5.303e^-4	0.868	INTRON Wnt6
2L	7339683	2L_7339683_SNP [dm3] 2L_7339683_SNP [dm6]	C	T	5.303e^-4	0.868	INTRON Wnt6
2L	7339702	2L_7339702_SNP [dm3] 2L_7339702_SNP [dm6]	C	G	5.303e^-4	0.868	INTRON Wnt6
2L	7340121	2L_7340121_SNP [dm3] 2L_7340121_SNP [dm6]	A	T	5.303e^-4	0.868	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7341713	2L_7341713_SNP [dm3] 2L_7341713_SNP [dm6]	A	T	5.303e^-4	0.868	INTRON Wnt6
2L	7341740	2L_7341740_SNP [dm3] 2L_7341740_SNP [dm6]	C	T	5.303e^-4	0.868	INTRON Wnt6
2L	7341804	2L_7341804_SNP [dm3] 2L_7341804_SNP [dm6]	C	T	5.303e^-4	0.868	INTRON Wnt6
2L	7341907	2L_7341907_SNP [dm3] 2L_7341907_SNP [dm6]	C	A	5.303e^-4	0.868	INTRON Wnt6
3L	5140000	3L_5140000_SNP [dm3] 3L_5146900_SNP [dm6]	T	C	5.303e^-4	0.868	SYNONYMOUS_CODING Aats-ala-m UPSTREAM CG10671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
3R	15076224	3R_15076224_SNP [dm3] 3R_19250502_SNP [dm6]	C	T	5.306e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21845989	2L_21845989_SNP [dm3] 2L_21845989_SNP [dm6]	T	G	5.336e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	65405	2L_65405_SNP [dm3] 2L_65405_SNP [dm6]	G	T	5.351e^-4	0.868	UPSTREAM CR45339 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7388951	2L_7388951_SNP [dm3] 2L_7388951_SNP [dm6]	G	A	5.356e^-4	0.868	SYNONYMOUS_CODING gudu UPSTREAM CG5149
3L	4306204	3L_4306204_SNP [dm3] 3L_4306204_SNP [dm6]	C	A	5.357e^-4	0.868	INTRON dyl
2L	2689262	2L_2689262_SNP [dm3] 2L_2689262_SNP [dm6]	T	A	5.365e^-4	0.868	INTRON CG31690
3R	21138684	3R_21138684_SNP [dm3] 3R_25312962_SNP [dm6]	G	T	5.372e^-4	0.868	INTRON CG31087
3R	25953422	3R_25953422_SNP [dm3] 3R_30127700_SNP [dm6]	A	G	5.373e^-4	0.868	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	11234636	3R_11234636_SNP [dm3] 3R_15408914_SNP [dm6]	T	C	5.376e^-4	0.868	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7912392	3R_7912392_SNP [dm3] 3R_12086670_SNP [dm6]	G	A	5.390e^-4	0.868	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18517298	2R_18517298_SNP [dm3] 2R_22629793_SNP [dm6]	A	G	5.397e^-4	0.868	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	14445636	2L_14445636_SNP [dm3] 2L_14445636_SNP [dm6]	T	C	5.397e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8167816	2L_8167816_SNP [dm3] 2L_8167816_SNP [dm6]	G	T	5.405e^-4	0.868	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19466098	X_19466098_SNP [dm3] X_19572065_SNP [dm6]	G	A	5.405e^-4	0.868	SYNONYMOUS_CODING Tao	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	5.417e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320942	X_11320942_SNP [dm3] X_11426909_SNP [dm6]	C	T	5.417e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	5.417e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	5.417e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13412254	2L_13412254_SNP [dm3] 2L_13412254_SNP [dm6]	C	G	5.422e^-4	0.868	UPSTREAM CG16848 & 1 other INTERGENIC
2L	8975102	2L_8975102_SNP [dm3] 2L_8975102_SNP [dm6]	A	T	5.423e^-4	0.868	START_GAINED CG9541 UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	5.427e^-4	0.868	INTRON CG32521
3R	11810698	3R_11810698_SNP [dm3] 3R_15984976_SNP [dm6]	C	G	5.457e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11234298	3L_11234298_SNP [dm3] 3L_11241198_SNP [dm6]	T	C	5.459e^-4	0.868	INTERGENIC
2R	10511959	2R_10511959_DEL [dm3] 2R_14624454_DEL [dm6]	TT	T	5.478e^-4	0.868	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19715538	2L_19715538_SNP [dm3] 2L_19715538_SNP [dm6]	T	A	5.495e^-4	0.868	INTRON Lar	TF binding site BDTNP1_TFBS_sna
3L	11043943	3L_11043943_SNP [dm3] 3L_11050843_SNP [dm6]	A	C	5.499e^-4	0.868	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
3L	11043959	3L_11043959_SNP [dm3] 3L_11050859_SNP [dm6]	G	C	5.499e^-4	0.868	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
2R	19551009	2R_19551009_INS [dm3] 2R_23663486_INS [dm6]	A	GC	5.507e^-4	0.868	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7975800	3L_7975800_SNP [dm3] 3L_7982700_SNP [dm6]	C	T	5.511e^-4	0.868	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21758962	3R_21758962_SNP [dm3] 3R_25933240_SNP [dm6]	A	G	5.520e^-4	0.868	INTRON CCAP-R
3R	21758981	3R_21758981_SNP [dm3] 3R_25933259_SNP [dm6]	A	G	5.520e^-4	0.868	INTRON CCAP-R
2R	16018987	2R_16018987_SNP [dm3] 2R_20131482_SNP [dm6]	G	T	5.522e^-4	0.868	INTERGENIC
2L	262249	2L_262249_SNP [dm3] 2L_262249_SNP [dm6]	A	T	5.527e^-4	0.868	UTR_3_PRIME CG17075 INTRON CG3645 EXON CR44219
3R	26615086	3R_26615086_SNP [dm3] 3R_30789364_SNP [dm6]	A	C	5.530e^-4	0.868	DOWNSTREAM wts & 1 other INTERGENIC
3L	7736729	3L_7736729_SNP [dm3] 3L_7743629_SNP [dm6]	G	T	5.534e^-4	0.868	UPSTREAM Snmp2 INTRON CG32373
3L	7736738	3L_7736738_SNP [dm3] 3L_7743638_SNP [dm6]	G	A	5.534e^-4	0.868	UPSTREAM Snmp2 INTRON CG32373
3L	1385378	3L_1385378_SNP [dm3] 3L_1385378_SNP [dm6]	C	T	5.540e^-4	0.868	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	4942061	3R_4942061_SNP [dm3] 3R_9116339_SNP [dm6]	C	A	5.552e^-4	0.868	INTRON pum
2L	19938190	2L_19938190_SNP [dm3] 2L_19938190_SNP [dm6]	T	C	5.577e^-4	0.868	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	5.588e^-4	0.868	INTRON vir-1
3L	2890001	3L_2890001_SNP [dm3] 3L_2890001_SNP [dm6]	G	A	5.597e^-4	0.868	INTRON spz5
3R	19540177	3R_19540177_SNP [dm3] 3R_23714455_SNP [dm6]	A	G	5.606e^-4	0.868	INTRON nau
2L	17597106	2L_17597106_SNP [dm3] 2L_17597106_SNP [dm6]	C	T	5.625e^-4	0.868	INTRON Sytalpha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16108598	2L_16108598_SNP [dm3] 2L_16108598_SNP [dm6]	A	T	5.634e^-4	0.868	INTERGENIC
2L	16108602	2L_16108602_DEL [dm3] 2L_16108602_DEL [dm6]	AGG	A	5.634e^-4	0.868	INTERGENIC
X	9505372	X_9505372_SNP [dm3] X_9611339_SNP [dm6]	A	G	5.644e^-4	0.868	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	5.646e^-4	0.868	INTRON Trpm
3R	2498344	3R_2498344_SNP [dm3] 3R_6672622_SNP [dm6]	C	T	5.646e^-4	0.868	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	11976399	3L_11976399_SNP [dm3] 3L_11983299_SNP [dm6]	T	C	5.649e^-4	0.868	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12527355	2L_12527355_SNP [dm3] 2L_12527355_SNP [dm6]	A	G	5.669e^-4	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	13981351	2L_13981351_SNP [dm3] 2L_13981351_SNP [dm6]	A	G	5.696e^-4	0.868	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10269901	2L_10269901_SNP [dm3] 2L_10269901_SNP [dm6]	C	T	5.699e^-4	0.868	UTR_3_PRIME CG4957 UPSTREAM Mulk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7389342	2L_7389342_SNP [dm3] 2L_7389342_SNP [dm6]	A	T	5.704e^-4	0.868	INTRON gudu
X	3301608	X_3301608_SNP [dm3] X_3407575_SNP [dm6]	G	A	5.721e^-4	0.868	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5810361	3L_5810361_SNP [dm3] 3L_5817261_SNP [dm6]	C	T	5.725e^-4	0.868	INTRON vn	regulatory region REDfly_CRMs
2L	8916196	2L_8916196_SNP [dm3] 2L_8916196_SNP [dm6]	T	A	5.726e^-4	0.868	INTRON CG34398
3L	10606676	3L_10606676_SNP [dm3] 3L_10613576_SNP [dm6]	A	C	5.738e^-4	0.868	INTERGENIC
2R	17172498	2R_17172498_SNP [dm3] 2R_21284993_SNP [dm6]	T	C	5.762e^-4	0.868	SYNONYMOUS_CODING MFS16 DOWNSTREAM CG10505
3R	10218968	3R_10218968_SNP [dm3] 3R_14393246_SNP [dm6]	G	A	5.774e^-4	0.868	SYNONYMOUS_CODING cv-c
2L	938603	2L_938603_SNP [dm3] 2L_938603_SNP [dm6]	A	G	5.789e^-4	0.868	INTRON CG4341
2R	16018621	2R_16018621_SNP [dm3] 2R_20131116_SNP [dm6]	C	T	5.797e^-4	0.868	INTERGENIC
2R	16018995	2R_16018995_SNP [dm3] 2R_20131490_SNP [dm6]	A	G	5.797e^-4	0.868	INTERGENIC
X	11320959	X_11320959_SNP [dm3] X_11426926_SNP [dm6]	A	C	5.797e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4405708	3L_4405708_SNP [dm3] 3L_4405708_SNP [dm6]	C	T	5.803e^-4	0.868	DOWNSTREAM Syx17 INTRON CG15019	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	5.803e^-4	0.868	SYNONYMOUS_CODING Strn-Mlck
2L	8715022	2L_8715022_SNP [dm3] 2L_8715022_SNP [dm6]	C	T	5.804e^-4	0.868	UPSTREAM raw INTRON raw
2L	7341240	2L_7341240_SNP [dm3] 2L_7341240_SNP [dm6]	T	C	5.812e^-4	0.868	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	7341286	2L_7341286_SNP [dm3] 2L_7341286_SNP [dm6]	T	G	5.812e^-4	0.868	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	7379933	2L_7379933_SNP [dm3] 2L_7379933_SNP [dm6]	C	A	5.813e^-4	0.868	SYNONYMOUS_CODING ninaC
3L	5706417	3L_5706417_SNP [dm3] 3L_5713317_SNP [dm6]	G	T	5.816e^-4	0.868	UPSTREAM CG44521 INTRON sif
3L	14074325	3L_14074325_SNP [dm3] 3L_14081225_SNP [dm6]	G	A	5.821e^-4	0.868	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3R	13962076	3R_13962076_SNP [dm3] 3R_18136354_SNP [dm6]	A	T	5.851e^-4	0.868	DOWNSTREAM sr INTERGENIC
3L	7949874	3L_7949874_SNP [dm3] 3L_7956774_SNP [dm6]	A	C	5.852e^-4	0.868	INTERGENIC
3L	11577451	3L_11577451_SNP [dm3] 3L_11584351_SNP [dm6]	G	A	5.854e^-4	0.868	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
2R	18525613	2R_18525613_SNP [dm3] 2R_22638108_SNP [dm6]	C	G	5.860e^-4	0.868	UPSTREAM Cdk9 DOWNSTREAM CG3732 INTRON bonsai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11337506	3L_11337506_SNP [dm3] 3L_11344406_SNP [dm6]	G	A	5.865e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	7374447	2L_7374447_SNP [dm3] 2L_7374447_SNP [dm6]	T	A	5.877e^-4	0.868	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	10943743	3L_10943743_SNP [dm3] 3L_10950643_SNP [dm6]	C	T	5.884e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11153179	3L_11153179_SNP [dm3] 3L_11160079_SNP [dm6]	G	A	5.910e^-4	0.868	NON_SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
X	11320940	X_11320940_SNP [dm3] X_11426907_SNP [dm6]	C	A	5.916e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4709584	2L_4709584_DEL [dm3] 2L_4709584_DEL [dm6]	AC	A	5.947e^-4	0.868	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1568023	2L_1568023_SNP [dm3] 2L_1568023_SNP [dm6]	T	C	5.948e^-4	0.868	INTRON haf
3L	14781524	3L_14781524_SNP [dm3] 3L_14788424_SNP [dm6]	A	C	5.957e^-4	0.868	SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10315428	3L_10315428_SNP [dm3] 3L_10322328_SNP [dm6]	C	A	5.977e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9128381	2R_9128381_SNP [dm3] 2R_13240876_SNP [dm6]	G	T	5.978e^-4	0.868	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12384827	2L_12384827_SNP [dm3] 2L_12384827_SNP [dm6]	C	G	5.995e^-4	0.868	INTRON bru-2
2L	5511377	2L_5511377_DEL [dm3] 2L_5511377_DEL [dm6]	TTATAACATAAATAAGTGGC...	T	6.011e^-4	0.868	INTERGENIC
3R	10512188	3R_10512188_SNP [dm3] 3R_14686466_SNP [dm6]	A	T	6.012e^-4	0.868	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19439965	2L_19439965_SNP [dm3] 2L_19439965_SNP [dm6]	C	T	6.017e^-4	0.868	UPSTREAM CG10237 INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5956650	2L_5956650_SNP [dm3] 2L_5956650_SNP [dm6]	A	G	6.020e^-4	0.868	SYNONYMOUS_CODING CG13998 UPSTREAM Vm26Ab & 1 other	TF binding site mE1_TFBS_cad
2L	5956821	2L_5956821_SNP [dm3] 2L_5956821_SNP [dm6]	T	G	6.020e^-4	0.868	UPSTREAM Vm26Ab & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3R	25734957	3R_25734957_SNP [dm3] 3R_29909235_SNP [dm6]	G	C	6.025e^-4	0.868	SYNONYMOUS_CODING CG31036
2R	10820146	2R_10820146_SNP [dm3] 2R_14932641_SNP [dm6]	A	G	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820199	2R_10820199_SNP [dm3] 2R_14932694_SNP [dm6]	C	T	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820203	2R_10820203_SNP [dm3] 2R_14932698_SNP [dm6]	A	T	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820209	2R_10820209_SNP [dm3] 2R_14932704_SNP [dm6]	C	A	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820226	2R_10820226_SNP [dm3] 2R_14932721_SNP [dm6]	A	T	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820227	2R_10820227_SNP [dm3] 2R_14932722_SNP [dm6]	A	T	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820250	2R_10820250_SNP [dm3] 2R_14932745_SNP [dm6]	A	G	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820263	2R_10820263_SNP [dm3] 2R_14932758_SNP [dm6]	C	G	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820277	2R_10820277_SNP [dm3] 2R_14932772_SNP [dm6]	G	A	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2R	10820279	2R_10820279_SNP [dm3] 2R_14932774_SNP [dm6]	A	T	6.031e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
X	17098430	X_17098430_DEL [dm3] X_17204397_DEL [dm6]	CC	C	6.040e^-4	0.868	DOWNSTREAM CG5070 INTERGENIC
2R	20172293	2R_20172293_SNP [dm3] 2R_24284770_SNP [dm6]	C	T	6.040e^-4	0.868	INTRON nvy
3R	6298128	3R_6298128_DEL [dm3] 3R_10472406_DEL [dm6]	TT	T	6.053e^-4	0.868	INTERGENIC
X	11116689	X_11116689_SNP [dm3] X_11222656_SNP [dm6]	A	G	6.074e^-4	0.868	UTR_3_PRIME CG44422 INTRON CG44422
X	5001474	X_5001474_SNP [dm3] X_5107441_SNP [dm6]	A	G	6.074e^-4	0.868	INTRON rg & 1 other
X	5001477	X_5001477_SNP [dm3] X_5107444_SNP [dm6]	T	C	6.074e^-4	0.868	INTRON rg & 1 other
X	8180625	X_8180625_SNP [dm3] X_8286592_SNP [dm6]	T	G	6.074e^-4	0.868	INTRON nAChRalpha3
2R	19449722	2R_19449722_SNP [dm3] 2R_23562199_SNP [dm6]	T	A	6.077e^-4	0.868	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6286954	3R_6286954_SNP [dm3] 3R_10461232_SNP [dm6]	C	T	6.081e^-4	0.868	EXON CR44939	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	15304707	3R_15304707_SNP [dm3] 3R_19478985_SNP [dm6]	C	T	6.082e^-4	0.868	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3777174	X_3777174_SNP [dm3] X_3883141_SNP [dm6]	A	G	6.108e^-4	0.868	DOWNSTREAM VhaAC39-1 INTERGENIC
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	6.109e^-4	0.868	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3L	5650243	3L_5650243_SNP [dm3] 3L_5657143_SNP [dm6]	T	C	6.112e^-4	0.868	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2795314	X_2795314_SNP [dm3] X_2901281_SNP [dm6]	C	T	6.121e^-4	0.868	INTRON kirre
2L	19676126	2L_19676126_SNP [dm3] 2L_19676126_SNP [dm6]	A	G	6.122e^-4	0.868	INTRON Lar
X	3301609	X_3301609_SNP [dm3] X_3407576_SNP [dm6]	C	T	6.126e^-4	0.868	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8649477	3L_8649477_SNP [dm3] 3L_8656377_SNP [dm6]	A	G	6.137e^-4	0.868	INTERGENIC
2R	10344155	2R_10344155_SNP [dm3] 2R_14456650_SNP [dm6]	C	G	6.142e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4410409	3L_4410409_DEL [dm3] 3L_4410409_DEL [dm6]	CTAAT	A	6.148e^-4	0.868	INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	10519317	2L_10519317_SNP [dm3] 2L_10519317_SNP [dm6]	T	C	6.148e^-4	0.868	DOWNSTREAM Lrr47 INTERGENIC
3L	18221088	3L_18221088_SNP [dm3] 3L_18227988_SNP [dm6]	T	C	6.149e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15120809	3R_15120809_SNP [dm3] 3R_19295087_SNP [dm6]	C	T	6.154e^-4	0.868	INTERGENIC
2L	1593310	2L_1593310_SNP [dm3] 2L_1593310_SNP [dm6]	A	G	6.167e^-4	0.868	INTRON haf
3L	9513307	3L_9513307_SNP [dm3] 3L_9520207_SNP [dm6]	G	A	6.175e^-4	0.868	INTRON CG33700
X	21931285	X_21931285_SNP [dm3] X_22529449_SNP [dm6]	C	T	6.184e^-4	0.868	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9493469	3L_9493469_SNP [dm3] 3L_9500369_SNP [dm6]	C	A	6.194e^-4	0.868	INTRON path
3L	9493470	3L_9493470_SNP [dm3] 3L_9500370_SNP [dm6]	T	C	6.194e^-4	0.868	INTRON path
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	6.195e^-4	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	6.195e^-4	0.868	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	5218134	X_5218134_SNP [dm3] X_5324101_SNP [dm6]	T	C	6.199e^-4	0.868	SYNONYMOUS_CODING Mcm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	11184066	3L_11184066_DEL [dm3] 3L_11190966_DEL [dm6]	TGACAAATCTCAGGGAAA...	T	6.203e^-4	0.868	INTRON GlcAT-P
3L	9128449	3L_9128449_SNP [dm3] 3L_9135349_SNP [dm6]	C	T	6.217e^-4	0.868	SYNONYMOUS_CODING Dhpr UPSTREAM bol DOWNSTREAM Use1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13189904	3R_13189904_SNP [dm3] 3R_17364182_SNP [dm6]	T	G	6.232e^-4	0.868	INTRON beat-IIa
3L	11314544	3L_11314544_SNP [dm3] 3L_11321444_SNP [dm6]	T	C	6.233e^-4	0.868	SYNONYMOUS_CODING CG6168
3R	10585177	3R_10585177_SNP [dm3] 3R_14759455_SNP [dm6]	C	T	6.233e^-4	0.868	INTRON jvl
3R	12274601	3R_12274601_SNP [dm3] 3R_16448879_SNP [dm6]	A	T	6.233e^-4	0.868	INTRON Pak3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18123825	3L_18123825_SNP [dm3] 3L_18130725_SNP [dm6]	C	T	6.235e^-4	0.868	SYNONYMOUS_CODING Cyp312a1
2L	7154262	2L_7154262_SNP [dm3] 2L_7154262_SNP [dm6]	G	A	6.244e^-4	0.868	INTRON Pvf3
2L	3387655	2L_3387655_SNP [dm3] 2L_3387655_SNP [dm6]	T	A	6.254e^-4	0.868	SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	3387656	2L_3387656_SNP [dm3] 2L_3387656_SNP [dm6]	G	A	6.254e^-4	0.868	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
X	17106140	X_17106140_SNP [dm3] X_17212107_SNP [dm6]	C	G	6.260e^-4	0.868	UPSTREAM CG18258 INTERGENIC
X	20292536	X_20292536_SNP [dm3] X_20421509_SNP [dm6]	G	A	6.261e^-4	0.868	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
X	20292541	X_20292541_SNP [dm3] X_20421514_SNP [dm6]	G	A	6.261e^-4	0.868	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
3L	2889773	3L_2889773_SNP [dm3] 3L_2889773_SNP [dm6]	T	A	6.268e^-4	0.868	INTRON spz5
X	3776065	X_3776065_SNP [dm3] X_3882032_SNP [dm6]	T	C	6.272e^-4	0.868	INTRON VhaAC39-1	TF binding site mE1_TFBS_cad
X	3776070	X_3776070_SNP [dm3] X_3882037_SNP [dm6]	T	A	6.272e^-4	0.868	INTRON VhaAC39-1	TF binding site mE1_TFBS_cad
2L	14124906	2L_14124906_SNP [dm3] 2L_14124906_SNP [dm6]	G	T	6.275e^-4	0.868	INTERGENIC
2R	10820244	2R_10820244_SNP [dm3] 2R_14932739_SNP [dm6]	A	C	6.280e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
2L	2681779	2L_2681779_SNP [dm3] 2L_2681779_SNP [dm6]	A	G	6.281e^-4	0.868	INTRON CG31690
2L	8716410	2L_8716410_SNP [dm3] 2L_8716410_SNP [dm6]	G	C	6.287e^-4	0.868	INTRON raw
3L	11648578	3L_11648578_SNP [dm3] 3L_11655478_SNP [dm6]	A	C	6.290e^-4	0.868	INTRON CG32085
2L	19574705	2L_19574705_DEL [dm3] 2L_19574705_DEL [dm6]	TT	T	6.300e^-4	0.868	INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1591462	3L_1591462_INS [dm3] 3L_1591462_INS [dm6]	T	TT	6.308e^-4	0.868	INTRON CG13917
2R	11143996	2R_11143996_SNP [dm3] 2R_15256491_SNP [dm6]	T	A	6.311e^-4	0.868	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2L	10181727	2L_10181727_SNP [dm3] 2L_10181727_SNP [dm6]	A	C	6.315e^-4	0.868	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
X	7050978	X_7050978_MNP [dm3] X_7156945_MNP [dm6]	TTG	GCA	6.316e^-4	0.868	INTRON CG9650	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19693063	2L_19693063_SNP [dm3] 2L_19693063_SNP [dm6]	A	T	6.316e^-4	0.868	INTRON Lar	TF binding site BDTNP1_TFBS_dl
2L	9088576	2L_9088576_SNP [dm3] 2L_9088576_SNP [dm6]	T	C	6.317e^-4	0.868	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20403371	X_20403371_SNP [dm3] X_20532344_SNP [dm6]	T	A	6.330e^-4	0.868	INTERGENIC
3L	9252258	3L_9252258_SNP [dm3] 3L_9259158_SNP [dm6]	A	T	6.352e^-4	0.868	INTRON GluRIB	TF binding site mE1_TFBS_HSA
2L	9598527	2L_9598527_SNP [dm3] 2L_9598527_SNP [dm6]	T	C	6.355e^-4	0.868	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	10872181	X_10872181_SNP [dm3] X_10978148_SNP [dm6]	G	A	6.363e^-4	0.868	INTRON CG42339
2L	19834878	2L_19834878_SNP [dm3] 2L_19834878_SNP [dm6]	A	C	6.369e^-4	0.868	INTRON sick
3R	7941012	3R_7941012_SNP [dm3] 3R_12115290_SNP [dm6]	A	G	6.373e^-4	0.868	INTERGENIC
2R	2735815	2R_2735815_SNP [dm3] 2R_6848310_SNP [dm6]	C	T	6.373e^-4	0.868	INTERGENIC
2L	7961608	2L_7961608_SNP [dm3] 2L_7961608_SNP [dm6]	G	C	6.374e^-4	0.868	INTRON Snoo
3L	6788724	3L_6788724_SNP [dm3] 3L_6795624_SNP [dm6]	A	G	6.380e^-4	0.868	DOWNSTREAM vvl INTERGENIC
3R	15334111	3R_15334111_SNP [dm3] 3R_19508389_SNP [dm6]	T	A	6.387e^-4	0.868	UPSTREAM Dys INTRON Dys
2L	4831949	2L_4831949_SNP [dm3] 2L_4831949_SNP [dm6]	A	G	6.396e^-4	0.868	INTRON Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14167285	X_14167285_SNP [dm3] X_14273252_SNP [dm6]	G	A	6.416e^-4	0.868	INTRON na
2R	16243780	2R_16243780_INS [dm3] 2R_20356275_INS [dm6]	A	AAAACGAA	6.419e^-4	0.868	INTERGENIC
3L	11596613	3L_11596613_SNP [dm3] 3L_11603513_SNP [dm6]	A	G	6.427e^-4	0.868	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10607795	3L_10607795_SNP [dm3] 3L_10614695_SNP [dm6]	C	G	6.427e^-4	0.868	INTERGENIC
3L	4796526	3L_4796526_SNP [dm3] 3L_4796526_SNP [dm6]	A	C	6.436e^-4	0.868	DOWNSTREAM RhoGEF64C INTERGENIC
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	6.453e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13739276	2R_13739276_SNP [dm3] 2R_17851771_SNP [dm6]	G	A	6.474e^-4	0.868	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	881620	2L_881620_SNP [dm3] 2L_881620_SNP [dm6]	A	G	6.475e^-4	0.868	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	881627	2L_881627_SNP [dm3] 2L_881627_SNP [dm6]	T	A	6.475e^-4	0.868	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	2261960	2L_2261960_SNP [dm3] 2L_2261960_SNP [dm6]	A	T	6.481e^-4	0.868	INTERGENIC
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	6.484e^-4	0.868	UPSTREAM CG2577 INTERGENIC
3L	16050413	3L_16050413_SNP [dm3] 3L_16057313_SNP [dm6]	C	T	6.497e^-4	0.868	INTRON Mbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8461269	3L_8461269_SNP [dm3] 3L_8468169_SNP [dm6]	G	A	6.506e^-4	0.868	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad
X	4448827	X_4448827_SNP [dm3] X_4554794_SNP [dm6]	A	G	6.525e^-4	0.868	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19530531	2L_19530531_SNP [dm3] 2L_19530531_SNP [dm6]	A	G	6.527e^-4	0.868	UPSTREAM CG10165 INTRON CG10137	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	18854737	3L_18854737_SNP [dm3] 3L_18861637_SNP [dm6]	G	A	6.539e^-4	0.868	DOWNSTREAM mir-315 INTERGENIC
2L	10312989	2L_10312989_SNP [dm3] 2L_10312989_SNP [dm6]	C	T	6.540e^-4	0.868	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12807291	2L_12807291_SNP [dm3] 2L_12807291_SNP [dm6]	C	T	6.540e^-4	0.868	DOWNSTREAM CR43818 INTERGENIC
2L	16994576	2L_16994576_SNP [dm3] 2L_16994576_SNP [dm6]	G	C	6.540e^-4	0.868	DOWNSTREAM beat-IIIb INTERGENIC
2L	967642	2L_967642_SNP [dm3] 2L_967642_SNP [dm6]	T	G	6.540e^-4	0.868	INTERGENIC
2R	17277983	2R_17277983_SNP [dm3] 2R_21390478_SNP [dm6]	C	G	6.540e^-4	0.868	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2R	6758389	2R_6758389_SNP [dm3] 2R_10870884_SNP [dm6]	G	A	6.540e^-4	0.868	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7613824	2R_7613824_SNP [dm3] 2R_11726319_SNP [dm6]	C	T	6.540e^-4	0.868	UTR_3_PRIME pyr	TF binding site mE1_TFBS_cad
3L	1144751	3L_1144751_SNP [dm3] 3L_1144751_SNP [dm6]	C	A	6.540e^-4	0.868	INTRON bab2
3L	1145625	3L_1145625_SNP [dm3] 3L_1145625_SNP [dm6]	A	G	6.540e^-4	0.868	INTRON bab2
3L	11526005	3L_11526005_SNP [dm3] 3L_11532905_SNP [dm6]	C	T	6.540e^-4	0.868	INTRON Mob2
3L	12020149	3L_12020149_SNP [dm3] 3L_12027049_SNP [dm6]	T	C	6.540e^-4	0.868	SYNONYMOUS_CODING rols UPSTREAM CR43994
3L	1323437	3L_1323437_SNP [dm3] 3L_1323437_SNP [dm6]	A	T	6.540e^-4	0.868	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1336557	3L_1336557_SNP [dm3] 3L_1336557_SNP [dm6]	A	G	6.540e^-4	0.868	INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	13949230	3L_13949230_SNP [dm3] 3L_13956130_SNP [dm6]	T	C	6.540e^-4	0.868	INTRON CG32137
3L	7829955	3L_7829955_SNP [dm3] 3L_7836855_SNP [dm6]	T	A	6.540e^-4	0.868	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	8620572	3L_8620572_SNP [dm3] 3L_8627472_SNP [dm6]	T	A	6.540e^-4	0.868	SYNONYMOUS_CODING Zasp66
3R	10579161	3R_10579161_SNP [dm3] 3R_14753439_SNP [dm6]	C	T	6.540e^-4	0.868	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12148968	3R_12148968_SNP [dm3] 3R_16323246_SNP [dm6]	C	G	6.540e^-4	0.868	UPSTREAM CG6901 INTRON Sulf1
3R	4266100	3R_4266100_SNP [dm3] 3R_8440378_SNP [dm6]	C	A	6.540e^-4	0.868	INTRON CG45263
X	21090164	X_21090164_SNP [dm3] X_21219137_SNP [dm6]	T	C	6.540e^-4	0.868	DOWNSTREAM CG32523 INTRON CG32521
X	21225083	X_21225083_SNP [dm3] X_21354056_SNP [dm6]	A	G	6.540e^-4	0.868	INTRON sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21269666	X_21269666_SNP [dm3] X_21398639_SNP [dm6]	G	A	6.540e^-4	0.868	INTERGENIC
X	21318313	X_21318313_SNP [dm3] X_21447286_SNP [dm6]	T	A	6.540e^-4	0.868	INTRON CG42343	TF binding site mE1_TFBS_chinmo
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	6.540e^-4	0.868	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	6.540e^-4	0.868	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	6.540e^-4	0.868	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	6.540e^-4	0.868	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5721050	X_5721050_SNP [dm3] X_5827017_SNP [dm6]	C	T	6.540e^-4	0.868	INTRON CG15765
3L	3544170	3L_3544170_SNP [dm3] 3L_3544170_SNP [dm6]	A	G	6.551e^-4	0.868	INTRON Eip63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7332999	2L_7332999_SNP [dm3] 2L_7332999_SNP [dm6]	C	G	6.564e^-4	0.868	UPSTREAM Wnt6 INTERGENIC
3L	5190791	3L_5190791_SNP [dm3] 3L_5197691_SNP [dm6]	C	A	6.565e^-4	0.868	INTRON shep
2L	8233211	2L_8233211_SNP [dm3] 2L_8233211_SNP [dm6]	T	A	6.579e^-4	0.868	INTRON Pvr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	19601508	2L_19601508_SNP [dm3] 2L_19601508_SNP [dm6]	C	A	6.598e^-4	0.868	INTRON CR44978 & 1 other
3L	11062625	3L_11062625_SNP [dm3] 3L_11069525_SNP [dm6]	G	A	6.615e^-4	0.868	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
3L	2909181	3L_2909181_SNP [dm3] 3L_2909181_SNP [dm6]	C	A	6.616e^-4	0.868	INTRON Shab
2R	17559492	2R_17559492_SNP [dm3] 2R_21671987_SNP [dm6]	A	C	6.618e^-4	0.868	SYNONYMOUS_CODING CG15676 DOWNSTREAM NC2alpha
X	9168933	X_9168933_SNP [dm3] X_9274900_SNP [dm6]	A	T	6.631e^-4	0.868	DOWNSTREAM c11.1 & 1 other INTRON CG16892	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	7969202	X_7969202_SNP [dm3] X_8075169_SNP [dm6]	G	A	6.634e^-4	0.868	UTR_5_PRIME Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9598594	2L_9598594_SNP [dm3] 2L_9598594_SNP [dm6]	T	A	6.636e^-4	0.868	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	119371	2R_119371_SNP [dm3] 2R_4231866_SNP [dm6]	G	C	6.650e^-4	0.868	INTERGENIC
2R	12794	2R_12794_SNP [dm3] 2R_4125289_SNP [dm6]	C	T	6.650e^-4	0.868	INTERGENIC
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	6.650e^-4	0.868	INTERGENIC
2R	181373	2R_181373_SNP [dm3] 2R_4293868_SNP [dm6]	G	T	6.650e^-4	0.868	INTERGENIC
2R	41533	2R_41533_SNP [dm3] 2R_4154028_SNP [dm6]	A	T	6.650e^-4	0.868	INTERGENIC
2R	46886	2R_46886_SNP [dm3] 2R_4159381_SNP [dm6]	G	T	6.650e^-4	0.868	INTERGENIC
2R	53706	2R_53706_SNP [dm3] 2R_4166201_SNP [dm6]	C	A	6.650e^-4	0.868	INTERGENIC
2R	69462	2R_69462_SNP [dm3] 2R_4181957_SNP [dm6]	G	T	6.650e^-4	0.868	INTERGENIC
2R	70664	2R_70664_SNP [dm3] 2R_4183159_SNP [dm6]	A	T	6.650e^-4	0.868	INTERGENIC
X	5682960	X_5682960_SNP [dm3] X_5788927_SNP [dm6]	G	A	6.651e^-4	0.868	UTR_3_PRIME CG42699 UPSTREAM CG15767
2R	10820187	2R_10820187_SNP [dm3] 2R_14932682_SNP [dm6]	T	A	6.669e^-4	0.868	UPSTREAM CG12853 INTRON CG10253
3R	26755582	3R_26755582_SNP [dm3] 3R_30929860_SNP [dm6]	T	C	6.686e^-4	0.868	SYNONYMOUS_CODING Ptx1 UTR_3_PRIME Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7097665	3R_7097665_INS [dm3] 3R_11271943_INS [dm6]	G	GG	6.694e^-4	0.868	INTRON CR31386
X	19600188	X_19600188_SNP [dm3] X_19706155_SNP [dm6]	G	C	6.700e^-4	0.868	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
X	15126824	X_15126824_SNP [dm3] X_15232791_SNP [dm6]	G	A	6.708e^-4	0.868	INTERGENIC
X	21271395	X_21271395_INS [dm3] X_21400368_INS [dm6]	G	GT	6.708e^-4	0.868	EXON CR45500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21273370	X_21273370_SNP [dm3] X_21402343_SNP [dm6]	A	G	6.708e^-4	0.868	UTR_3_PRIME CG1678 DOWNSTREAM CG1678
3R	19087945	3R_19087945_SNP [dm3] 3R_23262223_SNP [dm6]	C	T	6.714e^-4	0.868	UTR_3_PRIME orb
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	6.730e^-4	0.868	INTRON Ppn
2L	7327633	2L_7327633_SNP [dm3] 2L_7327633_SNP [dm6]	C	T	6.738e^-4	0.868	INTERGENIC
2R	20196825	2R_20196825_SNP [dm3] 2R_24309302_SNP [dm6]	A	G	6.739e^-4	0.868	INTRON betaTub60D	regulatory region REDfly_CRMs
X	19466155	X_19466155_SNP [dm3] X_19572122_SNP [dm6]	A	G	6.739e^-4	0.868	SYNONYMOUS_CODING Tao	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8957927	2L_8957927_SNP [dm3] 2L_8957927_SNP [dm6]	G	C	6.757e^-4	0.868	UTR_5_PRIME CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12896928	3R_12896928_SNP [dm3] 3R_17071206_SNP [dm6]	G	A	6.765e^-4	0.868	SYNONYMOUS_CODING Ns1 DOWNSTREAM Dad
2L	21382413	2L_21382413_SNP [dm3] 2L_21382413_SNP [dm6]	A	T	6.775e^-4	0.868	INTRON nrv3
3L	12382348	3L_12382348_SNP [dm3] 3L_12389248_SNP [dm6]	A	T	6.793e^-4	0.868	INTRON Ncc69
2R	5395543	2R_5395543_SNP [dm3] 2R_9508038_SNP [dm6]	C	T	6.795e^-4	0.868	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2L	11842681	2L_11842681_SNP [dm3] 2L_11842681_SNP [dm6]	T	C	6.803e^-4	0.868	UPSTREAM CG14933 & 2 others INTRON Pde1c
2L	7452433	2L_7452433_SNP [dm3] 2L_7452433_SNP [dm6]	A	T	6.807e^-4	0.868	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	11854074	3L_11854074_SNP [dm3] 3L_11860974_SNP [dm6]	G	C	6.808e^-4	0.868	INTRON CG44837
3R	25603205	3R_25603205_SNP [dm3] 3R_29777483_SNP [dm6]	A	G	6.816e^-4	0.868	INTRON kay	TF binding site BDTNP1_TFBS_z
2R	15592065	2R_15592065_SNP [dm3] 2R_19704560_SNP [dm6]	T	G	6.821e^-4	0.868	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	17170801	2R_17170801_SNP [dm3] 2R_21283296_SNP [dm6]	A	G	6.833e^-4	0.868	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17170802	2R_17170802_SNP [dm3] 2R_21283297_SNP [dm6]	T	C	6.833e^-4	0.868	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4576142	2L_4576142_SNP [dm3] 2L_4576142_SNP [dm6]	G	C	6.836e^-4	0.868	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8400970	X_8400970_SNP [dm3] X_8506937_SNP [dm6]	T	A	6.840e^-4	0.868	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10912796	X_10912796_SNP [dm3] X_11018763_SNP [dm6]	C	T	6.840e^-4	0.868	INTRON CG42339
3L	21282436	3L_21282436_SNP [dm3] 3L_21289336_SNP [dm6]	A	C	6.840e^-4	0.868	NON_SYNONYMOUS_CODING pzg	TF binding site mE1_TFBS_chinmo
2R	19724121	2R_19724121_DEL [dm3] 2R_23836598_DEL [dm6]	CACCACCACCATCATTAGC...	C	6.847e^-4	0.868		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10703084	3R_10703084_SNP [dm3] 3R_14877362_SNP [dm6]	A	G	6.852e^-4	0.868	INTERGENIC
X	16871762	X_16871762_SNP [dm3] X_16977729_SNP [dm6]	T	A	6.879e^-4	0.868	INTRON CG45002
2R	10344115	2R_10344115_SNP [dm3] 2R_14456610_SNP [dm6]	C	G	6.880e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344121	2R_10344121_SNP [dm3] 2R_14456616_SNP [dm6]	T	C	6.880e^-4	0.868	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26646106	3R_26646106_SNP [dm3] 3R_30820384_SNP [dm6]	G	A	6.893e^-4	0.868	INTRON cindr	TF binding site mE1_TFBS_disco mE1_TFBS_Trl
3R	5095953	3R_5095953_SNP [dm3] 3R_9270231_SNP [dm6]	A	C	6.903e^-4	0.868	DOWNSTREAM Vps16A INTERGENIC
3L	10607798	3L_10607798_SNP [dm3] 3L_10614698_SNP [dm6]	C	G	6.924e^-4	0.868	INTERGENIC
3L	10607801	3L_10607801_SNP [dm3] 3L_10614701_SNP [dm6]	G	T	6.924e^-4	0.868	INTERGENIC
3L	10607808	3L_10607808_SNP [dm3] 3L_10614708_SNP [dm6]	C	T	6.924e^-4	0.868	INTERGENIC
3L	10607809	3L_10607809_SNP [dm3] 3L_10614709_SNP [dm6]	A	T	6.924e^-4	0.868	INTERGENIC
3L	10607813	3L_10607813_SNP [dm3] 3L_10614713_SNP [dm6]	A	T	6.924e^-4	0.868	INTERGENIC
3L	10607814	3L_10607814_SNP [dm3] 3L_10614714_SNP [dm6]	G	T	6.924e^-4	0.868	INTERGENIC
X	2688807	X_2688807_SNP [dm3] X_2794774_SNP [dm6]	T	G	6.925e^-4	0.868	INTRON kirre & 1 other	regulatory region REDfly_CRMs
2L	13745710	2L_13745710_SNP [dm3] 2L_13745710_SNP [dm6]	G	C	6.926e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	13911064	2L_13911064_SNP [dm3] 2L_13911064_SNP [dm6]	G	A	6.926e^-4	0.868	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2L	1712391	2L_1712391_SNP [dm3] 2L_1712391_SNP [dm6]	C	A	6.926e^-4	0.868	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_chinmo
2L	2011847	2L_2011847_SNP [dm3] 2L_2011847_SNP [dm6]	A	G	6.926e^-4	0.868	UPSTREAM tRNA:CR31940 INTRON CG4238
2L	4624434	2L_4624434_SNP [dm3] 2L_4624434_SNP [dm6]	G	A	6.926e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
2L	745209	2L_745209_SNP [dm3] 2L_745209_SNP [dm6]	A	G	6.926e^-4	0.868	UPSTREAM Eaat2 INTERGENIC
2L	745300	2L_745300_SNP [dm3] 2L_745300_SNP [dm6]	T	A	6.926e^-4	0.868	UPSTREAM Eaat2 INTERGENIC
3L	13230726	3L_13230726_SNP [dm3] 3L_13237626_SNP [dm6]	A	G	6.926e^-4	0.868	INTRON caps	TF binding site mE1_TFBS_HSA
3R	13176162	3R_13176162_SNP [dm3] 3R_17350440_SNP [dm6]	G	C	6.926e^-4	0.868	INTRON beat-IIa
3R	13961955	3R_13961955_SNP [dm3] 3R_18136233_SNP [dm6]	G	T	6.926e^-4	0.868	DOWNSTREAM sr INTERGENIC
3R	13961960	3R_13961960_SNP [dm3] 3R_18136238_SNP [dm6]	G	C	6.926e^-4	0.868	DOWNSTREAM sr INTERGENIC
3R	13961967	3R_13961967_SNP [dm3] 3R_18136245_SNP [dm6]	T	C	6.926e^-4	0.868	DOWNSTREAM sr INTERGENIC
3R	14751575	3R_14751575_SNP [dm3] 3R_18925853_SNP [dm6]	G	A	6.926e^-4	0.868	INTRON Xrp1	TF binding site mE1_TFBS_cad
3R	22264175	3R_22264175_SNP [dm3] 3R_26438453_SNP [dm6]	G	C	6.926e^-4	0.868	INTERGENIC
3R	3363251	3R_3363251_SNP [dm3] 3R_7537529_SNP [dm6]	C	T	6.926e^-4	0.868	SYNONYMOUS_CODING alpha-Est4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18236100	X_18236100_SNP [dm3] X_18342067_SNP [dm6]	G	A	6.926e^-4	0.868	INTRON CG6123
2R	10382734	2R_10382734_SNP [dm3] 2R_14495229_SNP [dm6]	C	T	6.927e^-4	0.868	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2L	12094088	2L_12094088_SNP [dm3] 2L_12094088_SNP [dm6]	C	T	6.927e^-4	0.868	SYNONYMOUS_CODING Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3296481	3L_3296481_SNP [dm3] 3L_3296481_SNP [dm6]	G	A	6.940e^-4	0.868	NON_SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5712721	3L_5712721_SNP [dm3] 3L_5719621_SNP [dm6]	A	G	6.953e^-4	0.868	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
2L	19571178	2L_19571178_SNP [dm3] 2L_19571178_SNP [dm6]	T	A	6.953e^-4	0.868	UPSTREAM mir-2b-2 INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19926808	2R_19926808_SNP [dm3] 2R_24039285_SNP [dm6]	T	A	6.958e^-4	0.868	SYNONYMOUS_CODING IntS1
2L	7388888	2L_7388888_SNP [dm3] 2L_7388888_SNP [dm6]	A	G	6.963e^-4	0.868	SYNONYMOUS_CODING gudu UPSTREAM CG5149
3R	13471918	3R_13471918_SNP [dm3] 3R_17646196_SNP [dm6]	T	A	6.965e^-4	0.868	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15877001	2R_15877001_SNP [dm3] 2R_19989496_SNP [dm6]	G	A	6.978e^-4	0.868	INTERGENIC
X	13622816	X_13622816_SNP [dm3] X_13728783_SNP [dm6]	T	C	6.979e^-4	0.868	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_HSA
2L	19915382	2L_19915382_SNP [dm3] 2L_19915382_SNP [dm6]	G	A	7.002e^-4	0.868	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13621585	2R_13621585_SNP [dm3] 2R_17734080_SNP [dm6]	G	T	7.004e^-4	0.868	NON_SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	11633563	3L_11633563_SNP [dm3] 3L_11640463_SNP [dm6]	C	T	7.012e^-4	0.868	INTRON CG32091
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	7.014e^-4	0.868	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17031433	2R_17031433_SNP [dm3] 2R_21143928_SNP [dm6]	A	G	7.042e^-4	0.868	NON_SYNONYMOUS_CODING Xbp1 DOWNSTREAM CG9406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	19598506	X_19598506_SNP [dm3] X_19704473_SNP [dm6]	G	A	7.044e^-4	0.868	SYNONYMOUS_CODING CG14230 UPSTREAM CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11233233	3L_11233233_SNP [dm3] 3L_11240133_SNP [dm6]	C	G	7.044e^-4	0.868	INTERGENIC
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	7.049e^-4	0.868	DOWNSTREAM Sur INTERGENIC
2R	10804238	2R_10804238_SNP [dm3] 2R_14916733_SNP [dm6]	A	G	7.050e^-4	0.868	INTRON CG10249
2L	21891525	2L_21891525_SNP [dm3] 2L_21891525_SNP [dm6]	A	G	7.050e^-4	0.868	UPSTREAM CR45362 INTERGENIC
X	588325	X_588325_SNP [dm3] X_694292_SNP [dm6]	T	C	7.062e^-4	0.868	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	20573621	3R_20573621_SNP [dm3] 3R_24747899_SNP [dm6]	A	G	7.062e^-4	0.868	SYNONYMOUS_CODING tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	24888731	3R_24888731_SNP [dm3] 3R_29063009_SNP [dm6]	T	A	7.065e^-4	0.868	UPSTREAM CG11873 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	8015354	2R_8015354_SNP [dm3] 2R_12127849_SNP [dm6]	C	G	7.088e^-4	0.868	INTERGENIC
3L	15009391	3L_15009391_SNP [dm3] 3L_15016291_SNP [dm6]	G	C	7.088e^-4	0.868	UTR_3_PRIME Sytbeta
X	747289	X_747289_SNP [dm3] X_853256_SNP [dm6]	A	C	7.090e^-4	0.868	INTRON CG43867
2L	19842535	2L_19842535_DEL [dm3] 2L_19842535_DEL [dm6]	AAACTA	A	7.093e^-4	0.868	INTRON sick
2L	19843838	2L_19843838_SNP [dm3] 2L_19843838_SNP [dm6]	T	C	7.114e^-4	0.868	INTRON sick
2L	6464065	2L_6464065_SNP [dm3] 2L_6464065_SNP [dm6]	A	C	7.116e^-4	0.868	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	7.119e^-4	0.868	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	19898616	2L_19898616_SNP [dm3] 2L_19898616_SNP [dm6]	C	T	7.126e^-4	0.868	INTRON sick
2L	4362372	2L_4362372_SNP [dm3] 2L_4362372_SNP [dm6]	A	T	7.131e^-4	0.868	UTR_5_PRIME Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.413e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1333 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	4.748e^-6	0.811	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22254890	2L_22254890_SNP [dm3] 2L_22254890_SNP [dm6]	G	T	5.597e^-6	0.811	INTRON Tif-IA
2L	1025009	2L_1025009_SNP [dm3] 2L_1025009_SNP [dm6]	G	T	7.361e^-6	0.811	INTRON IA-2
2R	15046118	2R_15046118_SNP [dm3] 2R_19158613_SNP [dm6]	T	C	8.714e^-6	0.811	INTRON ena	TF binding site mE1_TFBS_inv
2L	3380094	2L_3380094_SNP [dm3] 2L_3380094_SNP [dm6]	C	A	8.922e^-6	0.811	INTERGENIC
2L	3380110	2L_3380110_SNP [dm3] 2L_3380110_SNP [dm6]	T	A	8.922e^-6	0.811	INTERGENIC
3L	18091924	3L_18091924_SNP [dm3] 3L_18098824_SNP [dm6]	C	T	9.838e^-6	0.811	INTRON CG13698
3L	11649711	3L_11649711_SNP [dm3] 3L_11656611_SNP [dm6]	T	A	1.031e^-5	0.811	UPSTREAM mir-274 INTRON CG32085
3R	6355104	3R_6355104_SNP [dm3] 3R_10529382_SNP [dm6]	G	T	1.074e^-5	0.811	INTRON hth
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	1.075e^-5	0.811	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.121e^-5	0.811	INTRON Elk
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	1.282e^-5	0.811	UPSTREAM mir-274 INTRON CG32085
3L	16699848	3L_16699848_SNP [dm3] 3L_16706748_SNP [dm6]	G	A	2.003e^-5	0.811	DOWNSTREAM CG9692 INTRON Lasp & 1 other
2R	2422710	2R_2422710_SNP [dm3] 2R_6535205_SNP [dm6]	T	C	2.082e^-5	0.811	INTRON jing
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	2.152e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	2.568e^-5	0.811	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	2.568e^-5	0.811	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	2.568e^-5	0.811	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709565	3L_709565_SNP [dm3] 3L_709565_SNP [dm6]	C	T	2.568e^-5	0.811	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.568e^-5	0.811	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.568e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4685922	3L_4685922_SNP [dm3] 3L_4685922_SNP [dm6]	A	T	2.662e^-5	0.811	INTRON axo
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	2.851e^-5	0.811	UPSTREAM mir-274 INTRON CG32085
X	18255489	X_18255489_SNP [dm3] X_18361456_SNP [dm6]	G	A	2.859e^-5	0.811	SYNONYMOUS_CODING CG6106
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.887e^-5	0.811	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.887e^-5	0.811	INTERGENIC
3L	13341789	3L_13341789_SNP [dm3] 3L_13348689_SNP [dm6]	C	T	3.265e^-5	0.811	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7016299	3L_7016299_SNP [dm3] 3L_7023199_SNP [dm6]	T	C	3.310e^-5	0.811	INTRON Mp
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	3.317e^-5	0.811	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.319e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	3.319e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11810421	3R_11810421_SNP [dm3] 3R_15984699_SNP [dm6]	T	C	3.320e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	709492	3L_709492_SNP [dm3] 3L_709492_SNP [dm6]	T	C	4.051e^-5	0.811	SPLICE_SITE_REGION CkIIalpha-i3 SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	20702984	2L_20702984_SNP [dm3] 2L_20702984_SNP [dm6]	A	G	4.133e^-5	0.811	INTRON Hr38
2R	19024678	2R_19024678_SNP [dm3] 2R_23137155_SNP [dm6]	A	T	4.186e^-5	0.811	INTERGENIC
X	5544356	X_5544356_SNP [dm3] X_5650323_SNP [dm6]	G	A	4.319e^-5	0.811	DOWNSTREAM CG42265 INTERGENIC
2L	13745184	2L_13745184_SNP [dm3] 2L_13745184_SNP [dm6]	T	A	4.323e^-5	0.811	INTERGENIC
2L	7389023	2L_7389023_SNP [dm3] 2L_7389023_SNP [dm6]	T	C	4.352e^-5	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389026	2L_7389026_SNP [dm3] 2L_7389026_SNP [dm6]	C	T	4.352e^-5	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389300	2L_7389300_DEL [dm3] 2L_7389300_DEL [dm6]	GGCATTGGATAAAGTGCTTC...	A	4.352e^-5	0.811	INTRON gudu
2L	7389018	2L_7389018_SNP [dm3] 2L_7389018_SNP [dm6]	T	C	4.488e^-5	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	22328190	2L_22328190_SNP [dm3] 2L_22328190_SNP [dm6]	A	T	4.509e^-5	0.811	INTRON CG17018	transposable element FlyBase
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	4.606e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	2689262	2L_2689262_SNP [dm3] 2L_2689262_SNP [dm6]	T	A	5.228e^-5	0.811	INTRON CG31690
3L	12306071	3L_12306071_SNP [dm3] 3L_12312971_SNP [dm6]	C	A	5.421e^-5	0.811	INTERGENIC
2L	14445460	2L_14445460_SNP [dm3] 2L_14445460_SNP [dm6]	T	C	5.643e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	18849428	X_18849428_SNP [dm3] X_18955395_SNP [dm6]	C	G	5.806e^-5	0.811	INTRON CG43759
X	18849530	X_18849530_SNP [dm3] X_18955497_SNP [dm6]	G	A	5.806e^-5	0.811	INTRON CG43759
X	18849532	X_18849532_SNP [dm3] X_18955499_SNP [dm6]	A	G	5.806e^-5	0.811	INTRON CG43759
X	18849542	X_18849542_SNP [dm3] X_18955509_SNP [dm6]	T	A	5.806e^-5	0.811	INTRON CG43759
X	18849579	X_18849579_SNP [dm3] X_18955546_SNP [dm6]	A	G	5.806e^-5	0.811	INTRON CG43759
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	5.820e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	5.820e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	2346665	2R_2346665_INS [dm3] 2R_6459160_INS [dm6]	T	TCAC	5.838e^-5	0.811	INTERGENIC	transposable element FlyBase
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	5.963e^-5	0.811	INTRON ktub
2R	15271806	2R_15271806_SNP [dm3] 2R_19384301_SNP [dm6]	C	T	5.993e^-5	0.811	NON_SYNONYMOUS_CODING CG10073
X	8226987	X_8226987_SNP [dm3] X_8332954_SNP [dm6]	C	G	6.018e^-5	0.811	INTRON nAChRalpha3
3L	709494	3L_709494_SNP [dm3] 3L_709494_SNP [dm6]	G	T	6.059e^-5	0.811	NON_SYNONYMOUS_CODING CkIIalpha-i3 SPLICE_SITE_REGION CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	6.113e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19696335	2L_19696335_SNP [dm3] 2L_19696335_SNP [dm6]	C	A	6.167e^-5	0.811	INTRON Lar
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	6.464e^-5	0.811	INTRON Wnt6
X	8423297	X_8423297_SNP [dm3] X_8529264_SNP [dm6]	C	A	6.966e^-5	0.811	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	5650232	3L_5650232_SNP [dm3] 3L_5657132_SNP [dm6]	T	C	6.969e^-5	0.811	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5650256	3L_5650256_SNP [dm3] 3L_5657156_SNP [dm6]	G	C	6.969e^-5	0.811	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	7.267e^-5	0.811	INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	7.267e^-5	0.811	INTERGENIC
X	11116709	X_11116709_SNP [dm3] X_11222676_SNP [dm6]	T	C	7.318e^-5	0.811	UTR_3_PRIME CG44422 INTRON CG44422
X	8180606	X_8180606_SNP [dm3] X_8286573_SNP [dm6]	A	T	7.318e^-5	0.811	INTRON nAChRalpha3
2L	12906845	2L_12906845_SNP [dm3] 2L_12906845_SNP [dm6]	A	G	7.438e^-5	0.811	INTERGENIC
3R	2441023	3R_2441023_DEL [dm3] 3R_6615301_DEL [dm6]	AAG	A	7.443e^-5	0.811	INTERGENIC
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	7.612e^-5	0.811	INTERGENIC
2R	9128514	2R_9128514_SNP [dm3] 2R_13241009_SNP [dm6]	G	T	7.671e^-5	0.811	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	7.895e^-5	0.811	INTRON Lar
3L	12306014	3L_12306014_SNP [dm3] 3L_12312914_SNP [dm6]	T	A	7.942e^-5	0.811	DOWNSTREAM CG44355 INTERGENIC
3L	12306020	3L_12306020_SNP [dm3] 3L_12312920_SNP [dm6]	T	C	7.942e^-5	0.811	DOWNSTREAM CG44355 INTERGENIC
X	6562883	X_6562883_SNP [dm3] X_6668850_SNP [dm6]	C	G	8.114e^-5	0.811	UTR_3_PRIME CG3198 DOWNSTREAM Ctr1A	TF binding site BDTNP1_TFBS_dl
X	15091413	X_15091413_SNP [dm3] X_15197380_SNP [dm6]	G	A	8.539e^-5	0.811	INTERGENIC
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	8.694e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10562564	2L_10562564_SNP [dm3] 2L_10562564_SNP [dm6]	G	T	8.736e^-5	0.811	INTRON Trim9
2R	19024962	2R_19024962_INS [dm3] 2R_23137439_INS [dm6]	A	AA	8.903e^-5	0.811	INTERGENIC
2L	13414010	2L_13414010_SNP [dm3] 2L_13414010_SNP [dm6]	A	C	8.949e^-5	0.811	NON_SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	9.029e^-5	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	14708185	X_14708185_INS [dm3] X_14814152_INS [dm6]	A	AA	9.030e^-5	0.811	INTRON rut
3R	14732129	3R_14732129_SNP [dm3] 3R_18906407_SNP [dm6]	T	A	9.101e^-5	0.811	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13241256	3L_13241256_SNP [dm3] 3L_13248156_SNP [dm6]	C	T	9.211e^-5	0.811	SYNONYMOUS_CODING CG32119 INTRON caps
2L	14444637	2L_14444637_SNP [dm3] 2L_14444637_SNP [dm6]	T	G	9.417e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12832291	2R_12832291_INS [dm3] 2R_16944786_INS [dm6]	A	ACCATA	9.680e^-5	0.811	UTR_3_PRIME Pkc53E UPSTREAM CG15614
X	18849580	X_18849580_SNP [dm3] X_18955547_SNP [dm6]	A	T	9.710e^-5	0.811	INTRON CG43759
2L	16239362	2L_16239362_SNP [dm3] 2L_16239362_SNP [dm6]	T	A	9.767e^-5	0.811	SYNONYMOUS_CODING CG42817
2L	10181577	2L_10181577_SNP [dm3] 2L_10181577_SNP [dm6]	C	A	9.786e^-5	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	10181718	2L_10181718_SNP [dm3] 2L_10181718_SNP [dm6]	C	T	9.786e^-5	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181723	2L_10181723_SNP [dm3] 2L_10181723_SNP [dm6]	A	G	9.786e^-5	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181732	2L_10181732_SNP [dm3] 2L_10181732_SNP [dm6]	T	A	9.786e^-5	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	16994418	2L_16994418_SNP [dm3] 2L_16994418_SNP [dm6]	T	C	9.798e^-5	0.811	DOWNSTREAM beat-IIIb INTERGENIC
3L	16330220	3L_16330220_SNP [dm3] 3L_16337120_SNP [dm6]	T	A	9.940e^-5	0.811	INTERGENIC
2R	13475745	2R_13475745_SNP [dm3] 2R_17588240_SNP [dm6]	C	T	9.996e^-5	0.811	NON_SYNONYMOUS_CODING RhoGAP54D
3L	12305992	3L_12305992_SNP [dm3] 3L_12312892_SNP [dm6]	C	A	1.000e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
3L	12306008	3L_12306008_SNP [dm3] 3L_12312908_SNP [dm6]	T	A	1.000e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	1.002e^-4	0.811	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	13412372	2L_13412372_SNP [dm3] 2L_13412372_SNP [dm6]	A	C	1.003e^-4	0.811	UPSTREAM CG16848 & 1 other INTERGENIC
X	10935834	X_10935834_SNP [dm3] X_11041801_SNP [dm6]	A	G	1.009e^-4	0.811	INTERGENIC
2L	14444762	2L_14444762_SNP [dm3] 2L_14444762_SNP [dm6]	G	T	1.033e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	9598594	2L_9598594_SNP [dm3] 2L_9598594_SNP [dm6]	T	A	1.052e^-4	0.811	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7320583	3L_7320583_SNP [dm3] 3L_7327483_SNP [dm6]	G	A	1.056e^-4	0.811	SYNONYMOUS_CODING CG8602	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7389342	2L_7389342_SNP [dm3] 2L_7389342_SNP [dm6]	A	T	1.060e^-4	0.811	INTRON gudu
X	6562903	X_6562903_SNP [dm3] X_6668870_SNP [dm6]	A	G	1.070e^-4	0.811	UTR_3_PRIME CG3198 DOWNSTREAM Ctr1A	TF binding site BDTNP1_TFBS_dl
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	1.073e^-4	0.811	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.074e^-4	0.811	UPSTREAM CR45341 INTRON CG17292
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	1.085e^-4	0.811	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	6002214	2R_6002214_SNP [dm3] 2R_10114709_SNP [dm6]	C	T	1.090e^-4	0.811	INTRON Pfk
3L	10315322	3L_10315322_SNP [dm3] 3L_10322222_SNP [dm6]	A	G	1.093e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19675350	2L_19675350_SNP [dm3] 2L_19675350_SNP [dm6]	C	T	1.096e^-4	0.811	INTRON Lar
3L	12306030	3L_12306030_SNP [dm3] 3L_12312930_SNP [dm6]	A	T	1.102e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
3L	12306067	3L_12306067_SNP [dm3] 3L_12312967_SNP [dm6]	G	T	1.102e^-4	0.811	INTERGENIC
X	9421316	X_9421316_SNP [dm3] X_9527283_SNP [dm6]	A	C	1.109e^-4	0.811	INTRON CG32700
3L	12305954	3L_12305954_DEL [dm3] 3L_12312854_DEL [dm6]	ATTATAGCAAAA...	A	1.120e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
X	9104267	X_9104267_SNP [dm3] X_9210234_SNP [dm6]	T	C	1.135e^-4	0.811	SYNONYMOUS_CODING CG12119
2R	20409194	2R_20409194_SNP [dm3] 2R_24521671_SNP [dm6]	G	T	1.135e^-4	0.811	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19206286	2L_19206286_SNP [dm3] 2L_19206286_SNP [dm6]	G	A	1.137e^-4	0.811	SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	1.138e^-4	0.811	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2L	13411952	2L_13411952_SNP [dm3] 2L_13411952_SNP [dm6]	A	G	1.160e^-4	0.811	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
3L	12305944	3L_12305944_SNP [dm3] 3L_12312844_SNP [dm6]	A	T	1.164e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2R	13163582	2R_13163582_SNP [dm3] 2R_17276077_SNP [dm6]	T	C	1.181e^-4	0.811	INTRON mbl
3L	12305620	3L_12305620_SNP [dm3] 3L_12312520_SNP [dm6]	C	T	1.205e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2R	13739276	2R_13739276_SNP [dm3] 2R_17851771_SNP [dm6]	G	A	1.208e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	6360684	3R_6360684_SNP [dm3] 3R_10534962_SNP [dm6]	C	T	1.209e^-4	0.811	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	3628909	3L_3628909_SNP [dm3] 3L_3628909_SNP [dm6]	T	G	1.213e^-4	0.811	INTRON dar1
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.224e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20599583	3L_20599583_SNP [dm3] 3L_20606483_SNP [dm6]	T	A	1.238e^-4	0.811	INTRON knrl
3L	9194705	3L_9194705_SNP [dm3] 3L_9201605_SNP [dm6]	T	C	1.239e^-4	0.811	INTERGENIC
X	21931868	X_21931868_SNP [dm3] X_22530032_SNP [dm6]	C	T	1.242e^-4	0.811	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	13745412	2R_13745412_SNP [dm3] 2R_17857907_SNP [dm6]	A	G	1.247e^-4	0.811	INTRON olf186-F
2R	13745441	2R_13745441_SNP [dm3] 2R_17857936_SNP [dm6]	T	A	1.247e^-4	0.811	INTRON olf186-F
2R	13745445	2R_13745445_SNP [dm3] 2R_17857940_SNP [dm6]	T	A	1.247e^-4	0.811	INTRON olf186-F
3L	5139886	3L_5139886_SNP [dm3] 3L_5146786_SNP [dm6]	G	A	1.263e^-4	0.811	SYNONYMOUS_CODING Aats-ala-m UPSTREAM CG10671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
3R	17877895	3R_17877895_SNP [dm3] 3R_22052173_SNP [dm6]	T	A	1.271e^-4	0.811	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	22210616	2L_22210616_SNP [dm3] 2L_22210616_SNP [dm6]	G	C	1.301e^-4	0.811	INTRON Ir40a
X	16076092	X_16076092_SNP [dm3] X_16182059_SNP [dm6]	C	T	1.304e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_sens
X	16076093	X_16076093_SNP [dm3] X_16182060_SNP [dm6]	A	T	1.304e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18123825	3L_18123825_SNP [dm3] 3L_18130725_SNP [dm6]	C	T	1.328e^-4	0.811	SYNONYMOUS_CODING Cyp312a1
3R	13333386	3R_13333386_SNP [dm3] 3R_17507664_SNP [dm6]	A	T	1.333e^-4	0.811	INTERGENIC
2L	2653952	2L_2653952_SNP [dm3] 2L_2653952_SNP [dm6]	T	C	1.371e^-4	0.811	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
X	18934539	X_18934539_SNP [dm3] X_19040506_SNP [dm6]	G	C	1.379e^-4	0.811	INTERGENIC
2R	13957672	2R_13957672_SNP [dm3] 2R_18070167_SNP [dm6]	A	T	1.391e^-4	0.811	INTRON CG34386
2R	9810502	2R_9810502_DEL [dm3] 2R_13922997_DEL [dm6]	CC	C	1.393e^-4	0.811	INTRON shot	TF binding site mE1_TFBS_D
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.393e^-4	0.811	INTERGENIC
X	2795314	X_2795314_SNP [dm3] X_2901281_SNP [dm6]	C	T	1.429e^-4	0.811	INTRON kirre
3R	25954087	3R_25954087_SNP [dm3] 3R_30128365_SNP [dm6]	G	A	1.436e^-4	0.811	DOWNSTREAM CG31029 INTRON Ppi1	TF binding site mE1_TFBS_chinmo
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	1.438e^-4	0.811	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709450	3L_709450_SNP [dm3] 3L_709450_SNP [dm6]	G	A	1.438e^-4	0.811	SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	12466631	2R_12466631_SNP [dm3] 2R_16579126_SNP [dm6]	A	G	1.446e^-4	0.811	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11601223	2L_11601223_SNP [dm3] 2L_11601223_SNP [dm6]	G	C	1.466e^-4	0.811	INTRON kek2
2L	7388951	2L_7388951_SNP [dm3] 2L_7388951_SNP [dm6]	G	A	1.468e^-4	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	10181695	2L_10181695_SNP [dm3] 2L_10181695_SNP [dm6]	C	A	1.501e^-4	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181696	2L_10181696_SNP [dm3] 2L_10181696_SNP [dm6]	A	C	1.501e^-4	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	19234661	2L_19234661_SNP [dm3] 2L_19234661_SNP [dm6]	T	C	1.510e^-4	0.811	INTERGENIC
2L	10956485	2L_10956485_SNP [dm3] 2L_10956485_SNP [dm6]	G	A	1.522e^-4	0.811	INTRON dpr2
2L	7332646	2L_7332646_SNP [dm3] 2L_7332646_SNP [dm6]	T	A	1.527e^-4	0.811	INTERGENIC
3R	6358111	3R_6358111_SNP [dm3] 3R_10532389_SNP [dm6]	A	G	1.531e^-4	0.811	INTRON hth
3R	20531458	3R_20531458_SNP [dm3] 3R_24705736_SNP [dm6]	C	G	1.535e^-4	0.811	SPLICE_SITE_REGION slo INTRON slo	TF binding site mE1_TFBS_chinmo
3R	20531479	3R_20531479_SNP [dm3] 3R_24705757_SNP [dm6]	G	A	1.535e^-4	0.811	INTRON slo	TF binding site mE1_TFBS_chinmo
3L	12306052	3L_12306052_SNP [dm3] 3L_12312952_SNP [dm6]	C	G	1.540e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2L	18863158	2L_18863158_INS [dm3] 2L_18863158_INS [dm6]	G	GATGAAG	1.548e^-4	0.811	INTRON tup
3L	10640601	3L_10640601_SNP [dm3] 3L_10647501_SNP [dm6]	A	G	1.561e^-4	0.811	INTRON CG32066
2L	7885047	2L_7885047_SNP [dm3] 2L_7885047_SNP [dm6]	C	G	1.573e^-4	0.811	UTR_3_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7885490	2L_7885490_SNP [dm3] 2L_7885490_SNP [dm6]	C	T	1.573e^-4	0.811	UPSTREAM CG34132 & 1 other INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16529985	2L_16529985_SNP [dm3] 2L_16529985_SNP [dm6]	A	T	1.587e^-4	0.811	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	10820287	2R_10820287_SNP [dm3] 2R_14932782_SNP [dm6]	C	T	1.591e^-4	0.811	UPSTREAM CG12853 INTRON CG10253
X	9168933	X_9168933_SNP [dm3] X_9274900_SNP [dm6]	A	T	1.601e^-4	0.811	DOWNSTREAM c11.1 & 1 other INTRON CG16892	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10315356	3L_10315356_SNP [dm3] 3L_10322256_SNP [dm6]	T	G	1.610e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7389894	2L_7389894_SNP [dm3] 2L_7389894_SNP [dm6]	G	T	1.613e^-4	0.811	SYNONYMOUS_CODING gudu
3L	12305951	3L_12305951_SNP [dm3] 3L_12312851_SNP [dm6]	A	G	1.615e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
3L	12305952	3L_12305952_SNP [dm3] 3L_12312852_SNP [dm6]	G	T	1.615e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
X	19520168	X_19520168_SNP [dm3] X_19626135_SNP [dm6]	G	A	1.624e^-4	0.811	NON_SYNONYMOUS_CODING CG14212 DOWNSTREAM MKP-4 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19025081	2R_19025081_SNP [dm3] 2R_23137558_SNP [dm6]	C	T	1.631e^-4	0.811	INTERGENIC
3R	13934463	3R_13934463_SNP [dm3] 3R_18108741_SNP [dm6]	T	C	1.636e^-4	0.811	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
X	10872181	X_10872181_SNP [dm3] X_10978148_SNP [dm6]	G	A	1.648e^-4	0.811	INTRON CG42339
3L	13343644	3L_13343644_SNP [dm3] 3L_13350544_SNP [dm6]	A	G	1.648e^-4	0.811	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7388404	2L_7388404_INS [dm3] 2L_7388404_INS [dm6]	T	TAAAAGAT	1.658e^-4	0.811	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7388441	2L_7388441_SNP [dm3] 2L_7388441_SNP [dm6]	A	G	1.658e^-4	0.811	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7389278	2L_7389278_SNP [dm3] 2L_7389278_SNP [dm6]	C	A	1.658e^-4	0.811	SYNONYMOUS_CODING gudu
2L	7389981	2L_7389981_SNP [dm3] 2L_7389981_SNP [dm6]	A	G	1.658e^-4	0.811	SYNONYMOUS_CODING gudu
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	1.658e^-4	0.811	INTRON olf186-F
2L	13413915	2L_13413915_SNP [dm3] 2L_13413915_SNP [dm6]	C	T	1.665e^-4	0.811	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3R	10196529	3R_10196529_SNP [dm3] 3R_14370807_SNP [dm6]	G	C	1.681e^-4	0.811	DOWNSTREAM snoRNA:Me18S-G1189 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10562571	2L_10562571_SNP [dm3] 2L_10562571_SNP [dm6]	A	G	1.697e^-4	0.811	INTRON Trim9
3L	16050413	3L_16050413_SNP [dm3] 3L_16057313_SNP [dm6]	C	T	1.699e^-4	0.811	INTRON Mbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18282388	2R_18282388_SNP [dm3] 2R_22394883_SNP [dm6]	G	A	1.716e^-4	0.811	DOWNSTREAM CG13506 INTRON babos
2L	7389426	2L_7389426_SNP [dm3] 2L_7389426_SNP [dm6]	C	G	1.722e^-4	0.811	SYNONYMOUS_CODING gudu
2L	7389681	2L_7389681_SNP [dm3] 2L_7389681_SNP [dm6]	G	A	1.722e^-4	0.811	SYNONYMOUS_CODING gudu
2L	4113066	2L_4113066_SNP [dm3] 2L_4113066_SNP [dm6]	T	C	1.730e^-4	0.811	INTRON ed
2L	7333841	2L_7333841_SNP [dm3] 2L_7333841_SNP [dm6]	G	A	1.751e^-4	0.811	UTR_5_PRIME Wnt6
2R	13745318	2R_13745318_INS [dm3] 2R_17857813_INS [dm6]	T	TTGATCATATCTCCT...	1.753e^-4	0.811	INTRON olf186-F
X	16076100	X_16076100_SNP [dm3] X_16182067_SNP [dm6]	T	A	1.761e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_sens
X	3301608	X_3301608_SNP [dm3] X_3407575_SNP [dm6]	G	A	1.767e^-4	0.811	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20312847	2R_20312847_SNP [dm3] 2R_24425324_SNP [dm6]	T	A	1.776e^-4	0.811	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	1.780e^-4	0.811	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2L	9489983	2L_9489983_SNP [dm3] 2L_9489983_SNP [dm6]	T	C	1.806e^-4	0.811	INTERGENIC
X	17316781	X_17316781_SNP [dm3] X_17422748_SNP [dm6]	A	G	1.810e^-4	0.811	UTR_3_PRIME CG12994 UPSTREAM CG8611 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14947132	X_14947132_SNP [dm3] X_15053099_SNP [dm6]	C	A	1.814e^-4	0.811	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7900203	X_7900203_SNP [dm3] X_8006170_SNP [dm6]	T	C	1.835e^-4	0.811	INTRON Tbh
X	7319363	X_7319363_SNP [dm3] X_7425330_SNP [dm6]	A	T	1.839e^-4	0.811	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	13843941	2L_13843941_SNP [dm3] 2L_13843941_SNP [dm6]	G	A	1.851e^-4	0.811	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A
X	3301609	X_3301609_SNP [dm3] X_3407576_SNP [dm6]	C	T	1.862e^-4	0.811	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14444583	2L_14444583_INS [dm3] 2L_14444583_INS [dm6]	T	TT	1.866e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14444588	2L_14444588_SNP [dm3] 2L_14444588_SNP [dm6]	A	T	1.866e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17172498	2R_17172498_SNP [dm3] 2R_21284993_SNP [dm6]	T	C	1.866e^-4	0.811	SYNONYMOUS_CODING MFS16 DOWNSTREAM CG10505
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.877e^-4	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	16018433	2R_16018433_SNP [dm3] 2R_20130928_SNP [dm6]	A	G	1.882e^-4	0.811	INTERGENIC
X	13545568	X_13545568_SNP [dm3] X_13651535_SNP [dm6]	T	C	1.904e^-4	0.811	INTRON NFAT
3L	16280246	3L_16280246_INS [dm3] 3L_16287146_INS [dm6]	G	GG	1.909e^-4	0.811	DOWNSTREAM CG13046 INTERGENIC
3L	769191	3L_769191_SNP [dm3] 3L_769191_SNP [dm6]	G	A	1.925e^-4	0.811	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	770738	3L_770738_SNP [dm3] 3L_770738_SNP [dm6]	C	T	1.925e^-4	0.811	DOWNSTREAM tRNA:CR32481 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	489376	2L_489376_SNP [dm3] 2L_489376_SNP [dm6]	C	T	1.932e^-4	0.811	INTRON ush
X	11701064	X_11701064_SNP [dm3] X_11807031_SNP [dm6]	G	A	1.978e^-4	0.811	UTR_5_PRIME Hsc70-3 UPSTREAM Hsc70-3	TF binding site BDTNP1_TFBS_dl
X	9158100	X_9158100_SNP [dm3] X_9264067_SNP [dm6]	G	T	1.979e^-4	0.811	SYNONYMOUS_CODING Erk7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6159384	X_6159384_SNP [dm3] X_6265351_SNP [dm6]	C	A	1.981e^-4	0.811	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23314755	3R_23314755_SNP [dm3] 3R_27489033_SNP [dm6]	G	A	2.002e^-4	0.811	INTRON Gr98a
3R	23314757	3R_23314757_SNP [dm3] 3R_27489035_SNP [dm6]	C	A	2.002e^-4	0.811	INTRON Gr98a
2R	1325960	2R_1325960_SNP [dm3] 2R_5438455_SNP [dm6]	T	C	2.023e^-4	0.811	INTRON laccase2	transposable element FlyBase
3L	12305972	3L_12305972_SNP [dm3] 3L_12312872_SNP [dm6]	G	C	2.023e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
3L	12305981	3L_12305981_INS [dm3] 3L_12312881_INS [dm6]	A	AA	2.023e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2L	7387641	2L_7387641_SNP [dm3] 2L_7387641_SNP [dm6]	T	A	2.030e^-4	0.811	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7388439	2L_7388439_SNP [dm3] 2L_7388439_SNP [dm6]	T	A	2.042e^-4	0.811	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6280663	2R_6280663_SNP [dm3] 2R_10393158_SNP [dm6]	C	T	2.050e^-4	0.811	INTRON CG42732
X	4981245	X_4981245_SNP [dm3] X_5087212_SNP [dm6]	A	G	2.059e^-4	0.811	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_kn mE1_TFBS_Trl
2L	13413897	2L_13413897_SNP [dm3] 2L_13413897_SNP [dm6]	T	C	2.060e^-4	0.811	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3R	19041019	3R_19041019_INS [dm3] 3R_23215297_INS [dm6]	A	AGCAGTCTTTG...	2.077e^-4	0.811	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	1363386	2R_1363386_SNP [dm3] 2R_5475881_SNP [dm6]	T	C	2.086e^-4	0.811	INTRON CG30440
X	19466098	X_19466098_SNP [dm3] X_19572065_SNP [dm6]	G	A	2.099e^-4	0.811	SYNONYMOUS_CODING Tao	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11808585	2R_11808585_SNP [dm3] 2R_15921080_SNP [dm6]	T	C	2.116e^-4	0.811	INTRON sli	TF binding site BDTNP1_TFBS_dl
2R	7027520	2R_7027520_SNP [dm3] 2R_11140015_SNP [dm6]	T	G	2.136e^-4	0.811	UTR_3_PRIME CG13229 DOWNSTREAM BBS4
2R	17170801	2R_17170801_SNP [dm3] 2R_21283296_SNP [dm6]	A	G	2.150e^-4	0.811	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17170802	2R_17170802_SNP [dm3] 2R_21283297_SNP [dm6]	T	C	2.150e^-4	0.811	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5158849	2L_5158849_SNP [dm3] 2L_5158849_SNP [dm6]	G	A	2.173e^-4	0.811	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
X	14741973	X_14741973_SNP [dm3] X_14847940_SNP [dm6]	G	A	2.202e^-4	0.811	SYNONYMOUS_CODING CG9522 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	2.216e^-4	0.811	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7341240	2L_7341240_SNP [dm3] 2L_7341240_SNP [dm6]	T	C	2.246e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	7341286	2L_7341286_SNP [dm3] 2L_7341286_SNP [dm6]	T	G	2.246e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	5434922	2L_5434922_SNP [dm3] 2L_5434922_SNP [dm6]	C	A	2.250e^-4	0.811	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17761515	2R_17761515_SNP [dm3] 2R_21874010_SNP [dm6]	C	G	2.259e^-4	0.811	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11337498	3L_11337498_SNP [dm3] 3L_11344398_SNP [dm6]	T	A	2.259e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11337502	3L_11337502_SNP [dm3] 3L_11344402_SNP [dm6]	A	T	2.259e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7207735	3L_7207735_SNP [dm3] 3L_7214635_SNP [dm6]	G	A	2.259e^-4	0.811	INTERGENIC
3R	9726514	3R_9726514_DEL [dm3] 3R_13900792_DEL [dm6]	GTT	C	2.273e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19025083	2R_19025083_DEL [dm3] 2R_23137560_DEL [dm6]	TTTTATCT	T	2.273e^-4	0.811	INTERGENIC
3L	18105542	3L_18105542_SNP [dm3] 3L_18112442_SNP [dm6]	T	C	2.273e^-4	0.811	UPSTREAM CG7341 & 1 other INTRON mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7885474	2L_7885474_SNP [dm3] 2L_7885474_SNP [dm6]	C	T	2.303e^-4	0.811	UPSTREAM CG34132 & 1 other INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2653921	2L_2653921_SNP [dm3] 2L_2653921_SNP [dm6]	C	T	2.319e^-4	0.811	UTR_3_PRIME Prosbeta4R1 UPSTREAM Or23a
2L	7337049	2L_7337049_DEL [dm3] 2L_7337049_DEL [dm6]	TT	T	2.333e^-4	0.811	INTRON Wnt6
2L	7337056	2L_7337056_DEL [dm3] 2L_7337056_DEL [dm6]	GGGTCCGGAAATAGCGAAAA...	T	2.333e^-4	0.811	INTRON Wnt6
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	2.333e^-4	0.811	INTRON Wnt6
2L	7337418	2L_7337418_SNP [dm3] 2L_7337418_SNP [dm6]	G	T	2.333e^-4	0.811	INTRON Wnt6
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	2.333e^-4	0.811	INTRON Wnt6
2L	7339170	2L_7339170_SNP [dm3] 2L_7339170_SNP [dm6]	A	G	2.333e^-4	0.811	INTRON Wnt6
2L	7339406	2L_7339406_SNP [dm3] 2L_7339406_SNP [dm6]	C	T	2.333e^-4	0.811	INTRON Wnt6
2L	7339683	2L_7339683_SNP [dm3] 2L_7339683_SNP [dm6]	C	T	2.333e^-4	0.811	INTRON Wnt6
2L	7339702	2L_7339702_SNP [dm3] 2L_7339702_SNP [dm6]	C	G	2.333e^-4	0.811	INTRON Wnt6
2L	7340121	2L_7340121_SNP [dm3] 2L_7340121_SNP [dm6]	A	T	2.333e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7341713	2L_7341713_SNP [dm3] 2L_7341713_SNP [dm6]	A	T	2.333e^-4	0.811	INTRON Wnt6
2L	7341740	2L_7341740_SNP [dm3] 2L_7341740_SNP [dm6]	C	T	2.333e^-4	0.811	INTRON Wnt6
2L	7341804	2L_7341804_SNP [dm3] 2L_7341804_SNP [dm6]	C	T	2.333e^-4	0.811	INTRON Wnt6
2L	7341907	2L_7341907_SNP [dm3] 2L_7341907_SNP [dm6]	C	A	2.333e^-4	0.811	INTRON Wnt6
3L	5140000	3L_5140000_SNP [dm3] 3L_5146900_SNP [dm6]	T	C	2.333e^-4	0.811	SYNONYMOUS_CODING Aats-ala-m UPSTREAM CG10671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2L	19645671	2L_19645671_SNP [dm3] 2L_19645671_SNP [dm6]	G	A	2.352e^-4	0.811	INTRON Lar
2L	19645704	2L_19645704_SNP [dm3] 2L_19645704_SNP [dm6]	A	C	2.352e^-4	0.811	INTRON Lar
X	6203178	X_6203178_SNP [dm3] X_6309145_SNP [dm6]	G	A	2.365e^-4	0.811	UPSTREAM CG15894 INTERGENIC
2R	18610658	2R_18610658_DEL [dm3] 2R_22723153_DEL [dm6]	AA	A	2.389e^-4	0.811	INTRON jbug
2L	5386814	2L_5386814_SNP [dm3] 2L_5386814_SNP [dm6]	C	G	2.403e^-4	0.811	UPSTREAM CR44745 INTERGENIC
2L	19676126	2L_19676126_SNP [dm3] 2L_19676126_SNP [dm6]	A	G	2.410e^-4	0.811	INTRON Lar
2R	16790314	2R_16790314_SNP [dm3] 2R_20902809_SNP [dm6]	T	G	2.423e^-4	0.811	UTR_5_PRIME otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4302639	3L_4302639_SNP [dm3] 3L_4302639_SNP [dm6]	A	G	2.431e^-4	0.811	INTRON dyl
2R	13156606	2R_13156606_SNP [dm3] 2R_17269101_SNP [dm6]	A	G	2.441e^-4	0.811	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	2.443e^-4	0.811	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13623922	X_13623922_SNP [dm3] X_13729889_SNP [dm6]	G	A	2.449e^-4	0.811	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13306655	3R_13306655_SNP [dm3] 3R_17480933_SNP [dm6]	A	G	2.461e^-4	0.811	INTRON Dscam3
X	4937732	X_4937732_SNP [dm3] X_5043699_SNP [dm6]	C	G	2.473e^-4	0.811	INTRON CR44833
X	4937865	X_4937865_SNP [dm3] X_5043832_SNP [dm6]	T	C	2.473e^-4	0.811	INTRON CR44833
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	2.477e^-4	0.811	UTR_3_PRIME CG32726 UPSTREAM CG15036
2L	20686855	2L_20686855_SNP [dm3] 2L_20686855_SNP [dm6]	C	T	2.486e^-4	0.811	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad
2R	10382734	2R_10382734_SNP [dm3] 2R_14495229_SNP [dm6]	C	T	2.501e^-4	0.811	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.527e^-4	0.811	INTRON CG42346
2L	20714980	2L_20714980_SNP [dm3] 2L_20714980_SNP [dm6]	G	A	2.528e^-4	0.811	UPSTREAM Hr38 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16052313	3L_16052313_SNP [dm3] 3L_16059213_SNP [dm6]	T	C	2.529e^-4	0.811	INTRON Mbs
2L	10921498	2L_10921498_SNP [dm3] 2L_10921498_SNP [dm6]	C	T	2.531e^-4	0.811	INTRON dpr2
3R	13979052	3R_13979052_SNP [dm3] 3R_18153330_SNP [dm6]	T	C	2.535e^-4	0.811	SYNONYMOUS_CODING CG14316
X	19520853	X_19520853_SNP [dm3] X_19626820_SNP [dm6]	C	T	2.546e^-4	0.811	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
X	5966984	X_5966984_DEL [dm3] X_6072951_DEL [dm6]	AAATA	A	2.566e^-4	0.811	UTR_5_PRIME Tsp5D INTRON Tsp5D
2R	13362398	2R_13362398_SNP [dm3] 2R_17474893_SNP [dm6]	C	T	2.569e^-4	0.811	UTR_3_PRIME qkr54B DOWNSTREAM CG6520 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	2.598e^-4	0.811	INTRON vir-1
2R	16996189	2R_16996189_INS [dm3] 2R_21108684_INS [dm6]	T	TGCGGCATGCCT...	2.604e^-4	0.811	INTRON ktub
2R	13739315	2R_13739315_SNP [dm3] 2R_17851810_SNP [dm6]	T	A	2.606e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	5650096	3L_5650096_SNP [dm3] 3L_5656996_SNP [dm6]	A	C	2.621e^-4	0.811	UPSTREAM sif INTRON lin-28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16280216	3L_16280216_SNP [dm3] 3L_16287116_SNP [dm6]	T	C	2.625e^-4	0.811	DOWNSTREAM CG13046 INTERGENIC
X	10357553	X_10357553_SNP [dm3] X_10463520_SNP [dm6]	C	T	2.636e^-4	0.811	UTR_3_PRIME nocte DOWNSTREAM nocte	TF binding site BDTNP1_TFBS_dl
3L	18682301	3L_18682301_SNP [dm3] 3L_18689201_SNP [dm6]	T	C	2.646e^-4	0.811	INTERGENIC
3L	18682309	3L_18682309_SNP [dm3] 3L_18689209_SNP [dm6]	C	T	2.646e^-4	0.811	INTERGENIC
3L	18682316	3L_18682316_SNP [dm3] 3L_18689216_SNP [dm6]	T	A	2.646e^-4	0.811	INTERGENIC
3L	18682342	3L_18682342_DEL [dm3] 3L_18689242_DEL [dm6]	AGTCA	A	2.646e^-4	0.811	INTERGENIC
3L	17688570	3L_17688570_SNP [dm3] 3L_17695470_SNP [dm6]	A	C	2.646e^-4	0.811	INTRON Ccn
X	22329143	X_22329143_SNP [dm3] X_22927307_SNP [dm6]	T	A	2.651e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17507267	2L_17507267_SNP [dm3] 2L_17507267_SNP [dm6]	A	G	2.651e^-4	0.811	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	17172506	2R_17172506_SNP [dm3] 2R_21285001_SNP [dm6]	A	C	2.668e^-4	0.811	SYNONYMOUS_CODING MFS16 DOWNSTREAM CG10505
3R	9956819	3R_9956819_SNP [dm3] 3R_14131097_SNP [dm6]	G	C	2.682e^-4	0.811	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	14006751	3L_14006751_SNP [dm3] 3L_14013651_SNP [dm6]	G	C	2.686e^-4	0.811	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	8461269	3L_8461269_SNP [dm3] 3L_8468169_SNP [dm6]	G	A	2.691e^-4	0.811	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad
2R	7159379	2R_7159379_SNP [dm3] 2R_11271874_SNP [dm6]	A	T	2.695e^-4	0.811	INTRON Cpr47Ef
2R	7159396	2R_7159396_SNP [dm3] 2R_11271891_SNP [dm6]	A	C	2.695e^-4	0.811	INTRON Cpr47Ef
2L	4024281	2L_4024281_SNP [dm3] 2L_4024281_SNP [dm6]	A	C	2.704e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1289360	3L_1289360_SNP [dm3] 3L_1289360_SNP [dm6]	C	G	2.706e^-4	0.811	INTRON CG32333	TF binding site mE1_TFBS_chinmo
2R	18910124	2R_18910124_SNP [dm3] 2R_23022601_SNP [dm6]	C	T	2.718e^-4	0.811	INTRON twi & 1 other
2R	19041581	2R_19041581_SNP [dm3] 2R_23154058_SNP [dm6]	T	C	2.718e^-4	0.811	DOWNSTREAM CG43207 INTRON CG9899
3R	8598181	3R_8598181_SNP [dm3] 3R_12772459_SNP [dm6]	A	T	2.721e^-4	0.811	INTRON beat-Vc
2R	11683370	2R_11683370_SNP [dm3] 2R_15795865_SNP [dm6]	T	C	2.743e^-4	0.811	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	11337506	3L_11337506_SNP [dm3] 3L_11344406_SNP [dm6]	G	A	2.758e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	20687356	2L_20687356_SNP [dm3] 2L_20687356_SNP [dm6]	G	A	2.779e^-4	0.811	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9128381	2R_9128381_SNP [dm3] 2R_13240876_SNP [dm6]	G	T	2.787e^-4	0.811	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6292678	3L_6292678_SNP [dm3] 3L_6299578_SNP [dm6]	T	A	2.803e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6788658	3L_6788658_SNP [dm3] 3L_6795558_SNP [dm6]	T	C	2.803e^-4	0.811	DOWNSTREAM vvl INTERGENIC
3L	6788736	3L_6788736_SNP [dm3] 3L_6795636_SNP [dm6]	T	C	2.803e^-4	0.811	DOWNSTREAM vvl INTERGENIC
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	2.807e^-4	0.811	INTRON Ca-alpha1D
2L	13735521	2L_13735521_SNP [dm3] 2L_13735521_SNP [dm6]	C	G	2.809e^-4	0.811	UPSTREAM CG31813 INTERGENIC
3L	22557109	3L_22557109_INS [dm3] 3L_22564009_INS [dm6]	A	AA	2.810e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	2.816e^-4	0.811	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	1901310	3L_1901310_SNP [dm3] 3L_1901310_SNP [dm6]	C	T	2.816e^-4	0.811	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	5095953	3R_5095953_SNP [dm3] 3R_9270231_SNP [dm6]	A	C	2.861e^-4	0.811	DOWNSTREAM Vps16A INTERGENIC
2R	2432304	2R_2432304_SNP [dm3] 2R_6544799_SNP [dm6]	T	C	2.901e^-4	0.811	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	7332999	2L_7332999_SNP [dm3] 2L_7332999_SNP [dm6]	C	G	2.904e^-4	0.811	UPSTREAM Wnt6 INTERGENIC
3L	5192198	3L_5192198_SNP [dm3] 3L_5199098_SNP [dm6]	G	A	2.907e^-4	0.811	INTRON shep
3R	14615080	3R_14615080_SNP [dm3] 3R_18789358_SNP [dm6]	T	A	2.908e^-4	0.811	INTRON CG7720	TF binding site mE1_TFBS_inv
X	14708500	X_14708500_SNP [dm3] X_14814467_SNP [dm6]	A	G	2.908e^-4	0.811	INTRON rut
3L	13330702	3L_13330702_SNP [dm3] 3L_13337602_SNP [dm6]	G	C	2.915e^-4	0.811	INTERGENIC
2L	7884840	2L_7884840_SNP [dm3] 2L_7884840_SNP [dm6]	T	A	2.923e^-4	0.811	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7884866	2L_7884866_SNP [dm3] 2L_7884866_SNP [dm6]	T	A	2.923e^-4	0.811	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7884867	2L_7884867_SNP [dm3] 2L_7884867_SNP [dm6]	C	A	2.923e^-4	0.811	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11337537	3L_11337537_DEL [dm3] 3L_11344437_DEL [dm6]	TT	T	2.951e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	14226808	3L_14226808_SNP [dm3] 3L_14233708_SNP [dm6]	A	G	2.963e^-4	0.811	NON_SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19735599	2R_19735599_SNP [dm3] 2R_23848076_SNP [dm6]	G	C	2.980e^-4	0.811	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
3L	12305980	3L_12305980_SNP [dm3] 3L_12312880_SNP [dm6]	T	A	2.986e^-4	0.811	DOWNSTREAM CG44355 INTERGENIC
2L	19915382	2L_19915382_SNP [dm3] 2L_19915382_SNP [dm6]	G	A	3.040e^-4	0.811	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	3.044e^-4	0.811	SYNONYMOUS_CODING CG6091
2R	6002427	2R_6002427_SNP [dm3] 2R_10114922_SNP [dm6]	A	G	3.067e^-4	0.811	SYNONYMOUS_CODING Pfk
3R	17384021	3R_17384021_SNP [dm3] 3R_21558299_SNP [dm6]	C	G	3.077e^-4	0.811	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	767580	2L_767580_SNP [dm3] 2L_767580_SNP [dm6]	A	G	3.081e^-4	0.811	INTERGENIC
3L	5192292	3L_5192292_SNP [dm3] 3L_5199192_SNP [dm6]	T	C	3.081e^-4	0.811	INTRON shep
2R	2321946	2R_2321946_SNP [dm3] 2R_6434441_SNP [dm6]	C	A	3.088e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10326926	2L_10326926_SNP [dm3] 2L_10326926_SNP [dm6]	T	C	3.094e^-4	0.811	SYNONYMOUS_CODING RnrL	TF binding site mE1_TFBS_sens
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.102e^-4	0.811	INTRON CG17839
2R	15092315	2R_15092315_SNP [dm3] 2R_19204810_SNP [dm6]	C	T	3.107e^-4	0.811	INTRON hppy
2R	15092337	2R_15092337_SNP [dm3] 2R_19204832_SNP [dm6]	T	C	3.107e^-4	0.811	INTRON hppy
2L	4591737	2L_4591737_SNP [dm3] 2L_4591737_SNP [dm6]	A	G	3.108e^-4	0.811	UTR_5_PRIME dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	746873	2L_746873_SNP [dm3] 2L_746873_SNP [dm6]	G	C	3.114e^-4	0.811	INTERGENIC
2R	6001779	2R_6001779_SNP [dm3] 2R_10114274_SNP [dm6]	T	C	3.140e^-4	0.811	INTRON Pfk
2L	5466864	2L_5466864_SNP [dm3] 2L_5466864_SNP [dm6]	T	C	3.147e^-4	0.811	UTR_3_PRIME mid DOWNSTREAM mid	TF binding site mE1_TFBS_HSA
3L	4341201	3L_4341201_SNP [dm3] 3L_4341201_SNP [dm6]	C	G	3.166e^-4	0.811	INTRON Cip4
3L	4341206	3L_4341206_SNP [dm3] 3L_4341206_SNP [dm6]	G	C	3.166e^-4	0.811	INTRON Cip4
3L	6788724	3L_6788724_SNP [dm3] 3L_6795624_SNP [dm6]	A	G	3.166e^-4	0.811	DOWNSTREAM vvl INTERGENIC
2R	1349147	2R_1349147_SNP [dm3] 2R_5461642_SNP [dm6]	T	G	3.182e^-4	0.811	INTERGENIC	transposable element FlyBase
2R	16584519	2R_16584519_SNP [dm3] 2R_20697014_SNP [dm6]	G	C	3.185e^-4	0.811	INTERGENIC
2L	7389762	2L_7389762_SNP [dm3] 2L_7389762_SNP [dm6]	A	G	3.198e^-4	0.811	SYNONYMOUS_CODING gudu
X	18849538	X_18849538_SNP [dm3] X_18955505_SNP [dm6]	A	G	3.208e^-4	0.811	INTRON CG43759
X	20215352	X_20215352_INS [dm3] X_20344325_INS [dm6]	A	AGTTGGACAGTCGGACA...	3.211e^-4	0.811	INTERGENIC	transposable element FlyBase
2R	16831281	2R_16831281_SNP [dm3] 2R_20943776_SNP [dm6]	C	T	3.212e^-4	0.811	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14444720	2L_14444720_SNP [dm3] 2L_14444720_SNP [dm6]	T	A	3.236e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	1631339	2L_1631339_SNP [dm3] 2L_1631339_SNP [dm6]	T	G	3.262e^-4	0.811	INTERGENIC
2R	15592065	2R_15592065_SNP [dm3] 2R_19704560_SNP [dm6]	T	G	3.275e^-4	0.811	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2L	962094	2L_962094_SNP [dm3] 2L_962094_SNP [dm6]	G	A	3.277e^-4	0.811	INTERGENIC
2R	16931578	2R_16931578_SNP [dm3] 2R_21044073_SNP [dm6]	G	A	3.285e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10512188	3R_10512188_SNP [dm3] 3R_14686466_SNP [dm6]	A	T	3.292e^-4	0.811	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5966910	X_5966910_SNP [dm3] X_6072877_SNP [dm6]	T	C	3.315e^-4	0.811	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
X	11117696	X_11117696_SNP [dm3] X_11223663_SNP [dm6]	T	C	3.334e^-4	0.811	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
X	11117705	X_11117705_SNP [dm3] X_11223672_SNP [dm6]	C	T	3.334e^-4	0.811	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	3.335e^-4	0.811	INTRON wat
2L	10181727	2L_10181727_SNP [dm3] 2L_10181727_SNP [dm6]	A	C	3.342e^-4	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	9089773	3L_9089773_SNP [dm3] 3L_9096673_SNP [dm6]	C	T	3.344e^-4	0.811	UPSTREAM CG13315 DOWNSTREAM bol INTERGENIC
2R	1605496	2R_1605496_SNP [dm3] 2R_5717991_SNP [dm6]	C	T	3.352e^-4	0.811	INTRON ap	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	11116689	X_11116689_SNP [dm3] X_11222656_SNP [dm6]	A	G	3.362e^-4	0.811	UTR_3_PRIME CG44422 INTRON CG44422
X	5001474	X_5001474_SNP [dm3] X_5107441_SNP [dm6]	A	G	3.362e^-4	0.811	INTRON rg & 1 other
X	5001477	X_5001477_SNP [dm3] X_5107444_SNP [dm6]	T	C	3.362e^-4	0.811	INTRON rg & 1 other
X	8180625	X_8180625_SNP [dm3] X_8286592_SNP [dm6]	T	G	3.362e^-4	0.811	INTRON nAChRalpha3
3R	1917459	3R_1917459_SNP [dm3] 3R_6091737_SNP [dm6]	A	T	3.381e^-4	0.811	INTRON Gasp
2R	6111369	2R_6111369_SNP [dm3] 2R_10223864_SNP [dm6]	A	G	3.404e^-4	0.811	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3L	16658080	3L_16658080_DEL [dm3] 3L_16664980_DEL [dm6]	TT	T	3.419e^-4	0.811	INTRON Galphaf
2R	12289145	2R_12289145_SNP [dm3] 2R_16401640_SNP [dm6]	T	A	3.420e^-4	0.811	INTRON Sema-2b
3R	15304707	3R_15304707_SNP [dm3] 3R_19478985_SNP [dm6]	C	T	3.422e^-4	0.811	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10943743	3L_10943743_SNP [dm3] 3L_10950643_SNP [dm6]	C	T	3.422e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6788386	X_6788386_SNP [dm3] X_6894353_SNP [dm6]	T	G	3.422e^-4	0.811	INTERGENIC
2R	3315699	2R_3315699_SNP [dm3] 2R_7428194_SNP [dm6]	C	A	3.445e^-4	0.811	NON_SYNONYMOUS_CODING CG11145 INTRON so	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13739211	2R_13739211_SNP [dm3] 2R_17851706_SNP [dm6]	A	T	3.449e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2R	13739214	2R_13739214_SNP [dm3] 2R_17851709_SNP [dm6]	A	G	3.449e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2R	13739318	2R_13739318_SNP [dm3] 2R_17851813_SNP [dm6]	T	C	3.449e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	3277518	2L_3277518_SNP [dm3] 2L_3277518_SNP [dm6]	T	G	3.450e^-4	0.811	INTRON CG3332	TF binding site mE1_TFBS_cad
2L	3277531	2L_3277531_SNP [dm3] 2L_3277531_SNP [dm6]	C	T	3.450e^-4	0.811	INTRON CG3332	TF binding site mE1_TFBS_cad
X	5248137	X_5248137_SNP [dm3] X_5354104_SNP [dm6]	A	T	3.459e^-4	0.811	INTRON SK
X	5248142	X_5248142_SNP [dm3] X_5354109_SNP [dm6]	C	T	3.459e^-4	0.811	INTRON SK
2L	19696330	2L_19696330_SNP [dm3] 2L_19696330_SNP [dm6]	T	C	3.461e^-4	0.811	INTRON Lar
3L	7207859	3L_7207859_SNP [dm3] 3L_7214759_SNP [dm6]	C	T	3.486e^-4	0.811	INTERGENIC
2L	6084492	2L_6084492_SNP [dm3] 2L_6084492_SNP [dm6]	G	C	3.488e^-4	0.811	INTRON Kr-h1	TF binding site mE1_TFBS_HSA
2R	13409006	2R_13409006_SNP [dm3] 2R_17521501_SNP [dm6]	G	A	3.493e^-4	0.811	INTRON Patronin
2L	1575786	2L_1575786_SNP [dm3] 2L_1575786_SNP [dm6]	G	C	3.501e^-4	0.811	INTRON haf
2R	17735834	2R_17735834_SNP [dm3] 2R_21848329_SNP [dm6]	C	T	3.515e^-4	0.811	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17735875	2R_17735875_SNP [dm3] 2R_21848370_SNP [dm6]	C	T	3.515e^-4	0.811	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10731932	3L_10731932_SNP [dm3] 3L_10738832_SNP [dm6]	T	A	3.519e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3350812	2R_3350812_SNP [dm3] 2R_7463307_SNP [dm6]	C	A	3.524e^-4	0.811	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7339932	2L_7339932_SNP [dm3] 2L_7339932_SNP [dm6]	C	T	3.524e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_Trl
2L	7341382	2L_7341382_SNP [dm3] 2L_7341382_SNP [dm6]	C	T	3.524e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	7341564	2L_7341564_SNP [dm3] 2L_7341564_SNP [dm6]	T	A	3.524e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	5192306	3L_5192306_SNP [dm3] 3L_5199206_SNP [dm6]	G	A	3.529e^-4	0.811	INTRON shep
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	3.537e^-4	0.811	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14444636	2L_14444636_SNP [dm3] 2L_14444636_SNP [dm6]	G	T	3.541e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3732728	3L_3732728_SNP [dm3] 3L_3732728_SNP [dm6]	A	G	3.572e^-4	0.811	INTRON CG32264
2L	7389219	2L_7389219_SNP [dm3] 2L_7389219_SNP [dm6]	C	A	3.574e^-4	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	3.580e^-4	0.811	INTERGENIC
3R	25608446	3R_25608446_SNP [dm3] 3R_29782724_SNP [dm6]	A	T	3.592e^-4	0.811	UTR_5_PRIME kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16831261	2R_16831261_SNP [dm3] 2R_20943756_SNP [dm6]	A	C	3.593e^-4	0.811	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16018621	2R_16018621_SNP [dm3] 2R_20131116_SNP [dm6]	C	T	3.608e^-4	0.811	INTERGENIC
2R	16018995	2R_16018995_SNP [dm3] 2R_20131490_SNP [dm6]	A	G	3.608e^-4	0.811	INTERGENIC
3L	4795099	3L_4795099_SNP [dm3] 3L_4795099_SNP [dm6]	T	G	3.623e^-4	0.811	INTRON RhoGEF64C
3L	283605	3L_283605_SNP [dm3] 3L_283605_SNP [dm6]	C	A	3.650e^-4	0.811	INTRON RhoGEF3
3L	13292224	3L_13292224_DEL [dm3] 3L_13299124_DEL [dm6]	TTAAAATAGTAAGCT...	A	3.655e^-4	0.811	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	11872695	2R_11872695_SNP [dm3] 2R_15985190_SNP [dm6]	A	G	3.677e^-4	0.811	SYNONYMOUS_CODING Strn-Mlck
2L	13412120	2L_13412120_SNP [dm3] 2L_13412120_SNP [dm6]	T	G	3.682e^-4	0.811	UPSTREAM CG16848 & 1 other INTERGENIC
2L	4588587	2L_4588587_SNP [dm3] 2L_4588587_SNP [dm6]	G	A	3.686e^-4	0.811	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	3.687e^-4	0.811	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6604525	X_6604525_INS [dm3] X_6710492_INS [dm6]	T	TCT	3.694e^-4	0.811	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7876356	2L_7876356_SNP [dm3] 2L_7876356_SNP [dm6]	T	C	3.720e^-4	0.811	INTRON spz3
2L	7876373	2L_7876373_SNP [dm3] 2L_7876373_SNP [dm6]	C	T	3.720e^-4	0.811	INTRON spz3
2L	7888205	2L_7888205_SNP [dm3] 2L_7888205_SNP [dm6]	G	A	3.720e^-4	0.811	SPLICE_SITE_REGION Spn28Da SYNONYMOUS_CODING Spn28Da UPSTREAM CG7102	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	5543840	X_5543840_SNP [dm3] X_5649807_SNP [dm6]	A	G	3.737e^-4	0.811	DOWNSTREAM CG42265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12447176	3L_12447176_SNP [dm3] 3L_12454076_SNP [dm6]	G	T	3.745e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12447179	3L_12447179_SNP [dm3] 3L_12454079_SNP [dm6]	T	A	3.745e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7887946	2L_7887946_SNP [dm3] 2L_7887946_SNP [dm6]	G	A	3.754e^-4	0.811	UPSTREAM CG7102 INTRON Spn28Da	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	11596348	2L_11596348_SNP [dm3] 2L_11596348_SNP [dm6]	A	G	3.786e^-4	0.811	INTRON kek2
3L	11854074	3L_11854074_SNP [dm3] 3L_11860974_SNP [dm6]	G	C	3.789e^-4	0.811	INTRON CG44837
3L	770549	3L_770549_SNP [dm3] 3L_770549_SNP [dm6]	G	A	3.790e^-4	0.811	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5909680	3L_5909680_SNP [dm3] 3L_5916580_SNP [dm6]	T	C	3.823e^-4	0.811	INTRON CG13288
X	20331489	X_20331489_SNP [dm3] X_20460462_SNP [dm6]	G	A	3.830e^-4	0.811	INTRON CG32506
2R	13739280	2R_13739280_SNP [dm3] 2R_17851775_SNP [dm6]	C	T	3.834e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2R	13739344	2R_13739344_SNP [dm3] 2R_17851839_SNP [dm6]	G	A	3.834e^-4	0.811	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	14167285	X_14167285_SNP [dm3] X_14273252_SNP [dm6]	G	A	3.843e^-4	0.811	INTRON na
2L	1568023	2L_1568023_SNP [dm3] 2L_1568023_SNP [dm6]	T	C	3.847e^-4	0.811	INTRON haf
2L	19693063	2L_19693063_SNP [dm3] 2L_19693063_SNP [dm6]	A	T	3.849e^-4	0.811	INTRON Lar	TF binding site BDTNP1_TFBS_dl
3R	14877717	3R_14877717_SNP [dm3] 3R_19051995_SNP [dm6]	G	C	3.865e^-4	0.811	INTRON cdi
3R	14877719	3R_14877719_SNP [dm3] 3R_19051997_SNP [dm6]	G	T	3.865e^-4	0.811	INTRON cdi
2L	4597463	2L_4597463_SNP [dm3] 2L_4597463_SNP [dm6]	C	T	3.877e^-4	0.811	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19572534	2L_19572534_DEL [dm3] 2L_19572534_DEL [dm6]	GGG	G	3.900e^-4	0.811	UTR_5_PRIME spi INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19572836	2L_19572836_SNP [dm3] 2L_19572836_SNP [dm6]	A	T	3.900e^-4	0.811	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11240861	3L_11240861_SNP [dm3] 3L_11247761_SNP [dm6]	C	A	3.905e^-4	0.811	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	8195512	X_8195512_SNP [dm3] X_8301479_SNP [dm6]	T	C	3.932e^-4	0.811	INTRON nAChRalpha3
3L	18197148	3L_18197148_SNP [dm3] 3L_18204048_SNP [dm6]	A	T	3.933e^-4	0.811	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	19589949	2L_19589949_SNP [dm3] 2L_19589949_SNP [dm6]	A	G	3.938e^-4	0.811	INTRON Lar
2R	12131548	2R_12131548_SNP [dm3] 2R_16244043_SNP [dm6]	C	T	3.960e^-4	0.811	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_inv
X	6628436	X_6628436_SNP [dm3] X_6734403_SNP [dm6]	G	T	3.978e^-4	0.811	INTRON CG3168 & 1 other
2L	14445636	2L_14445636_SNP [dm3] 2L_14445636_SNP [dm6]	T	C	4.016e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18124962	3L_18124962_SNP [dm3] 3L_18131862_SNP [dm6]	G	A	4.019e^-4	0.811	SYNONYMOUS_CODING Cyp312a1
2L	19854015	2L_19854015_SNP [dm3] 2L_19854015_SNP [dm6]	G	A	4.027e^-4	0.811	INTRON sick
X	11116565	X_11116565_SNP [dm3] X_11222532_SNP [dm6]	T	G	4.052e^-4	0.811	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
3L	1564233	3L_1564233_SNP [dm3] 3L_1564233_SNP [dm6]	T	C	4.066e^-4	0.811	UTR_5_PRIME CG7879
2L	13877789	2L_13877789_SNP [dm3] 2L_13877789_SNP [dm6]	T	G	4.083e^-4	0.811	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13877790	2L_13877790_SNP [dm3] 2L_13877790_SNP [dm6]	G	C	4.083e^-4	0.811	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22069408	X_22069408_SNP [dm3] X_22667572_SNP [dm6]	T	A	4.086e^-4	0.811	INTRON CR44997
3R	9531153	3R_9531153_SNP [dm3] 3R_13705431_SNP [dm6]	A	T	4.087e^-4	0.811	UPSTREAM Adgf-D INTERGENIC
2R	7959098	2R_7959098_SNP [dm3] 2R_12071593_SNP [dm6]	T	C	4.088e^-4	0.811	INTRON CG8888
2R	11143996	2R_11143996_SNP [dm3] 2R_15256491_SNP [dm6]	T	A	4.090e^-4	0.811	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2R	15046042	2R_15046042_SNP [dm3] 2R_19158537_SNP [dm6]	T	G	4.115e^-4	0.811	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15046049	2R_15046049_DEL [dm3] 2R_19158544_DEL [dm6]	ATACA	A	4.115e^-4	0.811	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3284184	2R_3284184_SNP [dm3] 2R_7396679_SNP [dm6]	A	C	4.124e^-4	0.811	UPSTREAM CG1707 DOWNSTREAM Eaf & 1 other INTERGENIC	transposable element FlyBase
2R	13621585	2R_13621585_SNP [dm3] 2R_17734080_SNP [dm6]	G	T	4.127e^-4	0.811	NON_SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	3096331	3L_3096331_SNP [dm3] 3L_3096331_SNP [dm6]	A	T	4.150e^-4	0.811	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7889316	2L_7889316_SNP [dm3] 2L_7889316_SNP [dm6]	G	C	4.157e^-4	0.811	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2R	6343064	2R_6343064_SNP [dm3] 2R_10455559_SNP [dm6]	G	A	4.184e^-4	0.811	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
X	14944691	X_14944691_SNP [dm3] X_15050658_SNP [dm6]	C	G	4.184e^-4	0.811	NON_SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	767684	2L_767684_SNP [dm3] 2L_767684_SNP [dm6]	G	A	4.188e^-4	0.811	INTERGENIC
3R	21388682	3R_21388682_SNP [dm3] 3R_25562960_SNP [dm6]	A	T	4.190e^-4	0.811	INTRON msi
X	11117721	X_11117721_SNP [dm3] X_11223688_SNP [dm6]	A	G	4.205e^-4	0.811	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2L	16124820	2L_16124820_SNP [dm3] 2L_16124820_SNP [dm6]	T	C	4.208e^-4	0.811	INTERGENIC
X	22329142	X_22329142_SNP [dm3] X_22927306_SNP [dm6]	A	C	4.210e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14877721	3R_14877721_INS [dm3] 3R_19051999_INS [dm6]	A	AACATGGTCCTGGAG...	4.215e^-4	0.811	INTRON cdi
3R	14971533	3R_14971533_SNP [dm3] 3R_19145811_SNP [dm6]	G	C	4.233e^-4	0.811	SYNONYMOUS_CODING Ppcs
2R	19141214	2R_19141214_SNP [dm3] 2R_23253691_SNP [dm6]	T	C	4.256e^-4	0.811	INTERGENIC
2L	7341738	2L_7341738_SNP [dm3] 2L_7341738_SNP [dm6]	C	T	4.272e^-4	0.811	INTRON Wnt6
3R	12945601	3R_12945601_SNP [dm3] 3R_17119879_SNP [dm6]	G	A	4.276e^-4	0.811	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl
2L	5511534	2L_5511534_SNP [dm3] 2L_5511534_SNP [dm6]	T	A	4.280e^-4	0.811	INTERGENIC
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	4.288e^-4	0.811	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1279060	3L_1279060_SNP [dm3] 3L_1279060_SNP [dm6]	A	T	4.294e^-4	0.811	INTRON CG32333
X	7879067	X_7879067_SNP [dm3] X_7985034_SNP [dm6]	T	C	4.298e^-4	0.811	SYNONYMOUS_CODING sn
2R	16400509	2R_16400509_SNP [dm3] 2R_20513004_SNP [dm6]	C	T	4.310e^-4	0.811	SPLICE_SITE_REGION CG13426 SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
3L	11240663	3L_11240663_SNP [dm3] 3L_11247563_SNP [dm6]	G	C	4.325e^-4	0.811	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6358075	3R_6358075_SNP [dm3] 3R_10532353_SNP [dm6]	C	T	4.328e^-4	0.811	INTRON hth
2L	13412035	2L_13412035_SNP [dm3] 2L_13412035_SNP [dm6]	T	C	4.338e^-4	0.811	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	4.339e^-4	0.811	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4595254	X_4595254_SNP [dm3] X_4701221_SNP [dm6]	A	G	4.368e^-4	0.811	UTR_3_PRIME ctp	TF binding site BDTNP1_TFBS_dl
2L	9489982	2L_9489982_SNP [dm3] 2L_9489982_SNP [dm6]	C	A	4.379e^-4	0.811	INTERGENIC
3R	12968846	3R_12968846_SNP [dm3] 3R_17143124_SNP [dm6]	A	T	4.382e^-4	0.811	UPSTREAM TwdlW INTERGENIC
3L	10942227	3L_10942227_SNP [dm3] 3L_10949127_SNP [dm6]	C	A	4.383e^-4	0.811	INTERGENIC
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	4.394e^-4	0.811	INTRON Wnt6
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	4.394e^-4	0.811	SYNONYMOUS_CODING 5-HT1A
X	10357636	X_10357636_SNP [dm3] X_10463603_SNP [dm6]	T	G	4.395e^-4	0.811	UTR_3_PRIME nocte DOWNSTREAM nocte	TF binding site BDTNP1_TFBS_dl
X	2963370	X_2963370_SNP [dm3] X_3069337_SNP [dm6]	C	A	4.413e^-4	0.811	INTRON kirre
2R	16642537	2R_16642537_SNP [dm3] 2R_20755032_SNP [dm6]	G	T	4.415e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16018987	2R_16018987_SNP [dm3] 2R_20131482_SNP [dm6]	G	T	4.419e^-4	0.811	INTERGENIC
3R	19043705	3R_19043705_SNP [dm3] 3R_23217983_SNP [dm6]	T	C	4.423e^-4	0.811	NON_SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
2L	3877917	2L_3877917_SNP [dm3] 2L_3877917_SNP [dm6]	T	A	4.423e^-4	0.811	INTRON capu
2L	3877918	2L_3877918_SNP [dm3] 2L_3877918_SNP [dm6]	C	T	4.423e^-4	0.811	INTRON capu
X	22327763	X_22327763_SNP [dm3] X_22925927_SNP [dm6]	G	T	4.425e^-4	0.811	INTERGENIC	transposable element FlyBase
2L	11645049	2L_11645049_SNP [dm3] 2L_11645049_SNP [dm6]	T	G	4.427e^-4	0.811	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
2L	7389822	2L_7389822_SNP [dm3] 2L_7389822_SNP [dm6]	C	T	4.430e^-4	0.811	SYNONYMOUS_CODING gudu
3R	21385360	3R_21385360_SNP [dm3] 3R_25559638_SNP [dm6]	C	T	4.433e^-4	0.811	INTRON msi
2R	16188909	2R_16188909_SNP [dm3] 2R_20301404_SNP [dm6]	G	T	4.436e^-4	0.811	UPSTREAM CR44640 INTERGENIC
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	4.449e^-4	0.811	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	6002182	2R_6002182_SNP [dm3] 2R_10114677_SNP [dm6]	C	T	4.463e^-4	0.811	INTRON Pfk
3L	769149	3L_769149_SNP [dm3] 3L_769149_SNP [dm6]	A	G	4.473e^-4	0.811	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	13411499	2L_13411499_SNP [dm3] 2L_13411499_SNP [dm6]	C	G	4.483e^-4	0.811	SYNONYMOUS_CODING Vm34Ca DOWNSTREAM CG7110
2L	7387617	2L_7387617_SNP [dm3] 2L_7387617_SNP [dm6]	C	A	4.497e^-4	0.811	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387624	2L_7387624_SNP [dm3] 2L_7387624_SNP [dm6]	A	G	4.497e^-4	0.811	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387626	2L_7387626_SNP [dm3] 2L_7387626_SNP [dm6]	A	T	4.497e^-4	0.811	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387644	2L_7387644_SNP [dm3] 2L_7387644_SNP [dm6]	G	T	4.497e^-4	0.811	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10934955	3L_10934955_SNP [dm3] 3L_10941855_SNP [dm6]	T	C	4.508e^-4	0.811	INTERGENIC
2L	11645571	2L_11645571_SNP [dm3] 2L_11645571_SNP [dm6]	G	A	4.536e^-4	0.811	INTRON CG6614
2R	5691309	2R_5691309_SNP [dm3] 2R_9803804_SNP [dm6]	A	C	4.537e^-4	0.811	INTRON CG1688
2R	5691376	2R_5691376_SNP [dm3] 2R_9803871_SNP [dm6]	G	C	4.537e^-4	0.811	INTRON CG1688
2R	15054124	2R_15054124_SNP [dm3] 2R_19166619_SNP [dm6]	C	A	4.551e^-4	0.811	INTRON CG10737
2L	8975102	2L_8975102_SNP [dm3] 2L_8975102_SNP [dm6]	A	T	4.569e^-4	0.811	START_GAINED CG9541 UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16945775	2R_16945775_SNP [dm3] 2R_21058270_SNP [dm6]	C	T	4.594e^-4	0.811	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	19185764	2L_19185764_SNP [dm3] 2L_19185764_SNP [dm6]	A	C	4.607e^-4	0.811	UPSTREAM pigeon & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19189371	2L_19189371_SNP [dm3] 2L_19189371_SNP [dm6]	G	A	4.607e^-4	0.811	UPSTREAM drl INTRON pigeon	TF binding site mE1_TFBS_HSA
2L	19191432	2L_19191432_INS [dm3] 2L_19191432_INS [dm6]	T	TACC	4.607e^-4	0.811	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19191435	2L_19191435_DEL [dm3] 2L_19191435_DEL [dm6]	AG	A	4.607e^-4	0.811	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19191438	2L_19191438_SNP [dm3] 2L_19191438_SNP [dm6]	T	G	4.607e^-4	0.811	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9356372	2L_9356372_SNP [dm3] 2L_9356372_SNP [dm6]	C	G	4.617e^-4	0.811	INTERGENIC
X	11116967	X_11116967_INS [dm3] X_11222934_INS [dm6]	AAAAAA	CTGTTTT	4.625e^-4	0.811	UTR_3_PRIME CG44422 INTRON CG44422
2L	7875242	2L_7875242_SNP [dm3] 2L_7875242_SNP [dm6]	A	G	4.639e^-4	0.811	SYNONYMOUS_CODING spz3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7922194	2L_7922194_SNP [dm3] 2L_7922194_SNP [dm6]	C	T	4.639e^-4	0.811	INTRON Snoo
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	4.640e^-4	0.811	INTRON beat-Ic
2R	4904810	2R_4904810_SNP [dm3] 2R_9017305_SNP [dm6]	C	T	4.641e^-4	0.811	UPSTREAM CG13747 & 1 other INTERGENIC
2L	8055465	2L_8055465_SNP [dm3] 2L_8055465_SNP [dm6]	T	G	4.655e^-4	0.811	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8055468	2L_8055468_SNP [dm3] 2L_8055468_SNP [dm6]	C	T	4.655e^-4	0.811	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11645554	2L_11645554_SNP [dm3] 2L_11645554_SNP [dm6]	G	A	4.662e^-4	0.811	INTRON CG6614
2L	11645570	2L_11645570_SNP [dm3] 2L_11645570_SNP [dm6]	A	C	4.662e^-4	0.811	INTRON CG6614
2R	10035311	2R_10035311_SNP [dm3] 2R_14147806_SNP [dm6]	C	A	4.664e^-4	0.811	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	10285658	X_10285658_SNP [dm3] X_10391625_SNP [dm6]	C	T	4.665e^-4	0.811	INTRON flw
X	10285676	X_10285676_SNP [dm3] X_10391643_SNP [dm6]	A	G	4.665e^-4	0.811	INTRON flw
X	10285725	X_10285725_SNP [dm3] X_10391692_SNP [dm6]	A	C	4.665e^-4	0.811	INTRON flw
3L	5826670	3L_5826670_INS [dm3] 3L_5833570_INS [dm6]	G	GTAATAAAATATTATTG...	4.690e^-4	0.811	INTRON vn	TF binding site mE1_TFBS_HSA
3L	709732	3L_709732_SNP [dm3] 3L_709732_SNP [dm6]	T	C	4.696e^-4	0.811	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	4.699e^-4	0.811	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	8338644	2L_8338644_SNP [dm3] 2L_8338644_SNP [dm6]	G	A	4.703e^-4	0.811	SYNONYMOUS_CODING CG14274
2L	13761076	2L_13761076_SNP [dm3] 2L_13761076_SNP [dm6]	T	C	4.705e^-4	0.811	INTRON TM9SF4
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	4.710e^-4	0.811	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2789570	2R_2789570_SNP [dm3] 2R_6902065_SNP [dm6]	A	C	4.717e^-4	0.811	INTRON CG30158
X	22265563	X_22265563_SNP [dm3] X_22863727_SNP [dm6]	G	T	4.721e^-4	0.811	INTRON CG42346
2R	15947442	2R_15947442_SNP [dm3] 2R_20059937_SNP [dm6]	C	T	4.730e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22265487	X_22265487_SNP [dm3] X_22863651_SNP [dm6]	C	G	4.734e^-4	0.811	INTRON CG42346
2R	15592066	2R_15592066_SNP [dm3] 2R_19704561_SNP [dm6]	G	T	4.742e^-4	0.811	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	11869587	2R_11869587_SNP [dm3] 2R_15982082_SNP [dm6]	C	T	4.748e^-4	0.811	SYNONYMOUS_CODING Strn-Mlck
2L	8025574	2L_8025574_SNP [dm3] 2L_8025574_SNP [dm6]	G	C	4.748e^-4	0.811	SYNONYMOUS_CODING Tg
3L	3504595	3L_3504595_SNP [dm3] 3L_3504595_SNP [dm6]	G	T	4.752e^-4	0.811	INTRON CG42324
2R	15045961	2R_15045961_SNP [dm3] 2R_19158456_SNP [dm6]	A	G	4.785e^-4	0.811	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20403404	X_20403404_SNP [dm3] X_20532377_SNP [dm6]	G	T	4.787e^-4	0.811	INTERGENIC
2L	8338676	2L_8338676_SNP [dm3] 2L_8338676_SNP [dm6]	A	G	4.788e^-4	0.811	INTRON CG14274
2L	7341597	2L_7341597_SNP [dm3] 2L_7341597_SNP [dm6]	A	T	4.796e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	709696	3L_709696_SNP [dm3] 3L_709696_SNP [dm6]	C	T	4.797e^-4	0.811	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	15335173	3R_15335173_SNP [dm3] 3R_19509451_SNP [dm6]	T	G	4.801e^-4	0.811	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	2793455	2R_2793455_SNP [dm3] 2R_6905950_SNP [dm6]	T	C	4.813e^-4	0.811	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
2L	7889290	2L_7889290_SNP [dm3] 2L_7889290_SNP [dm6]	G	A	4.829e^-4	0.811	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2L	7889291	2L_7889291_SNP [dm3] 2L_7889291_SNP [dm6]	A	T	4.829e^-4	0.811	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2L	7889358	2L_7889358_SNP [dm3] 2L_7889358_SNP [dm6]	A	G	4.829e^-4	0.811	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
3R	25468097	3R_25468097_SNP [dm3] 3R_29642375_SNP [dm6]	G	T	4.835e^-4	0.811	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3R	25468099	3R_25468099_SNP [dm3] 3R_29642377_SNP [dm6]	G	A	4.835e^-4	0.811	INTRON Dop1R2	TF binding site mE1_TFBS_cad
2R	11874249	2R_11874249_SNP [dm3] 2R_15986744_SNP [dm6]	A	T	4.839e^-4	0.811	UPSTREAM CR45021 INTRON Strn-Mlck
2L	19853060	2L_19853060_SNP [dm3] 2L_19853060_SNP [dm6]	C	T	4.844e^-4	0.811	INTRON sick
2L	19686469	2L_19686469_DEL [dm3] 2L_19686469_DEL [dm6]	GCGTA	G	4.854e^-4	0.811	INTRON Lar
2L	19686527	2L_19686527_SNP [dm3] 2L_19686527_SNP [dm6]	T	C	4.854e^-4	0.811	INTRON Lar
2L	608315	2L_608315_SNP [dm3] 2L_608315_SNP [dm6]	G	A	4.864e^-4	0.811	DOWNSTREAM CR43649 INTERGENIC
2R	13651903	2R_13651903_SNP [dm3] 2R_17764398_SNP [dm6]	T	A	4.864e^-4	0.811	UTR_3_PRIME CG5009 DOWNSTREAM OstDelta
3L	11976584	3L_11976584_SNP [dm3] 3L_11983484_SNP [dm6]	C	T	4.874e^-4	0.811	NON_SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo
X	14905574	X_14905574_SNP [dm3] X_15011541_SNP [dm6]	C	T	4.877e^-4	0.811	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	5513325	2L_5513325_SNP [dm3] 2L_5513325_SNP [dm6]	A	C	4.883e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	4966354	X_4966354_SNP [dm3] X_5072321_SNP [dm6]	G	A	4.887e^-4	0.811	UTR_3_PRIME CG32767
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	4.891e^-4	0.811	INTRON wat
2L	7886270	2L_7886270_SNP [dm3] 2L_7886270_SNP [dm6]	G	T	4.897e^-4	0.811	UPSTREAM SmE DOWNSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	4937844	X_4937844_SNP [dm3] X_5043811_SNP [dm6]	C	A	4.907e^-4	0.811	INTRON CR44833
3R	19041003	3R_19041003_SNP [dm3] 3R_23215281_SNP [dm6]	T	A	4.910e^-4	0.811	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041014	3R_19041014_SNP [dm3] 3R_23215292_SNP [dm6]	C	G	4.910e^-4	0.811	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041070	3R_19041070_SNP [dm3] 3R_23215348_SNP [dm6]	T	A	4.910e^-4	0.811	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041076	3R_19041076_INS [dm3] 3R_23215354_INS [dm6]	T	TAT	4.910e^-4	0.811	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	13910746	2L_13910746_SNP [dm3] 2L_13910746_SNP [dm6]	C	T	4.923e^-4	0.811	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3R	14739161	3R_14739161_INS [dm3] 3R_18913439_INS [dm6]	A	ACATACATA	4.923e^-4	0.811	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	22265505	X_22265505_SNP [dm3] X_22863669_SNP [dm6]	C	T	4.924e^-4	0.811	INTRON CG42346
3L	11525598	3L_11525598_SNP [dm3] 3L_11532498_SNP [dm6]	G	T	4.932e^-4	0.811	INTRON Mob2
2R	19724121	2R_19724121_DEL [dm3] 2R_23836598_DEL [dm6]	CACCACCACCATCATTAGC...	C	4.939e^-4	0.811		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5513310	2L_5513310_INS [dm3] 2L_5513310_INS [dm6]	A	ACA	4.946e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14781582	3L_14781582_SNP [dm3] 3L_14788482_SNP [dm6]	C	T	4.958e^-4	0.811	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10606676	3L_10606676_SNP [dm3] 3L_10613576_SNP [dm6]	A	C	4.961e^-4	0.811	INTERGENIC
2L	7919233	2L_7919233_DEL [dm3] 2L_7919233_DEL [dm6]	AA	A	4.978e^-4	0.811	INTRON Snoo
3L	14512699	3L_14512699_SNP [dm3] 3L_14519599_SNP [dm6]	G	A	5.001e^-4	0.811	DOWNSTREAM CG4613 INTRON bbg
3L	14512706	3L_14512706_SNP [dm3] 3L_14519606_SNP [dm6]	A	C	5.001e^-4	0.811	DOWNSTREAM CG4613 INTRON bbg
2R	3096641	2R_3096641_SNP [dm3] 2R_7209136_SNP [dm6]	C	T	5.003e^-4	0.811	SYNONYMOUS_CODING pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4056871	3L_4056871_SNP [dm3] 3L_4056871_SNP [dm6]	A	G	5.006e^-4	0.811	INTRON CG1136	TF binding site mE1_TFBS_cad
X	9585721	X_9585721_SNP [dm3] X_9691688_SNP [dm6]	G	A	5.024e^-4	0.811	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	9585733	X_9585733_INS [dm3] X_9691700_INS [dm6]	C	CAT	5.024e^-4	0.811	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	6050546	3R_6050546_SNP [dm3] 3R_10224824_SNP [dm6]	A	G	5.026e^-4	0.811	UPSTREAM CG34107 & 2 others INTERGENIC
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	5.029e^-4	0.811	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	5.033e^-4	0.811	INTRON nAChRalpha6
2L	10964087	2L_10964087_SNP [dm3] 2L_10964087_SNP [dm6]	C	G	5.037e^-4	0.811	UTR_5_PRIME dpr2 DOWNSTREAM CG33129	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	9814900	X_9814900_SNP [dm3] X_9920867_SNP [dm6]	A	T	5.045e^-4	0.811	INTERGENIC
X	8527234	X_8527234_SNP [dm3] X_8633201_SNP [dm6]	C	T	5.050e^-4	0.811	SYNONYMOUS_CODING oc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16050178	3L_16050178_SNP [dm3] 3L_16057078_SNP [dm6]	T	A	5.053e^-4	0.811	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
3R	21872650	3R_21872650_SNP [dm3] 3R_26046928_SNP [dm6]	G	T	5.072e^-4	0.811	INTRON gro
2L	19238291	2L_19238291_SNP [dm3] 2L_19238291_SNP [dm6]	C	T	5.113e^-4	0.811	INTERGENIC
2L	4481037	2L_4481037_SNP [dm3] 2L_4481037_SNP [dm6]	A	G	5.113e^-4	0.811	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19604568	2L_19604568_SNP [dm3] 2L_19604568_SNP [dm6]	A	T	5.130e^-4	0.811	INTRON Lar & 1 other
3L	3029337	3L_3029337_SNP [dm3] 3L_3029337_SNP [dm6]	C	A	5.131e^-4	0.811	INTERGENIC
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	5.134e^-4	0.811	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
X	12264955	X_12264955_DEL [dm3] X_12370922_DEL [dm6]	CC	C	5.134e^-4	0.811	INTERGENIC
3L	3439440	3L_3439440_SNP [dm3] 3L_3439440_SNP [dm6]	A	G	5.181e^-4	0.811	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7574202	3L_7574202_SNP [dm3] 3L_7581102_SNP [dm6]	G	A	5.205e^-4	0.811	INTERGENIC
2L	12384815	2L_12384815_SNP [dm3] 2L_12384815_SNP [dm6]	C	T	5.226e^-4	0.811	INTRON bru-2
3L	3296481	3L_3296481_SNP [dm3] 3L_3296481_SNP [dm6]	G	A	5.239e^-4	0.811	NON_SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13962076	3R_13962076_SNP [dm3] 3R_18136354_SNP [dm6]	A	T	5.254e^-4	0.811	DOWNSTREAM sr INTERGENIC
3R	25603243	3R_25603243_DEL [dm3] 3R_29777521_DEL [dm6]	ATAGAT	A	5.259e^-4	0.811	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	7328870	2L_7328870_SNP [dm3] 2L_7328870_SNP [dm6]	A	T	5.264e^-4	0.811	DOWNSTREAM CR45304 INTERGENIC
3L	12382348	3L_12382348_SNP [dm3] 3L_12389248_SNP [dm6]	A	T	5.270e^-4	0.811	INTRON Ncc69
2R	13107988	2R_13107988_SNP [dm3] 2R_17220483_SNP [dm6]	C	A	5.272e^-4	0.811	INTRON mbl
3R	19043868	3R_19043868_SNP [dm3] 3R_23218146_SNP [dm6]	T	G	5.282e^-4	0.811	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
2R	11817318	2R_11817318_DEL [dm3] 2R_15929813_DEL [dm6]	GA	G	5.291e^-4	0.811	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12385843	2L_12385843_SNP [dm3] 2L_12385843_SNP [dm6]	G	A	5.308e^-4	0.811	INTRON bru-2
X	5001451	X_5001451_DEL [dm3] X_5107418_DEL [dm6]	CAAAAT	A	5.313e^-4	0.811	INTRON rg & 1 other
X	22274168	X_22274168_DEL [dm3] X_22872332_DEL [dm6]	AA	A	5.313e^-4	0.811	UPSTREAM CG34334 & 1 other INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11976399	3L_11976399_SNP [dm3] 3L_11983299_SNP [dm6]	T	C	5.329e^-4	0.811	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2654033	2L_2654033_SNP [dm3] 2L_2654033_SNP [dm6]	C	T	5.345e^-4	0.811	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2L	2654034	2L_2654034_SNP [dm3] 2L_2654034_SNP [dm6]	G	A	5.345e^-4	0.811	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
3L	11062625	3L_11062625_SNP [dm3] 3L_11069525_SNP [dm6]	G	A	5.348e^-4	0.811	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
2L	19696451	2L_19696451_SNP [dm3] 2L_19696451_SNP [dm6]	T	A	5.349e^-4	0.811	INTRON Lar
3R	14843148	3R_14843148_SNP [dm3] 3R_19017426_SNP [dm6]	A	C	5.413e^-4	0.811	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1161236	2L_1161236_SNP [dm3] 2L_1161236_SNP [dm6]	G	A	5.417e^-4	0.811	INTRON CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	769090	3L_769090_SNP [dm3] 3L_769090_SNP [dm6]	C	T	5.422e^-4	0.811	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	15757959	3L_15757959_SNP [dm3] 3L_15764859_SNP [dm6]	C	G	5.423e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14126940	2R_14126940_SNP [dm3] 2R_18239435_SNP [dm6]	G	A	5.432e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7389070	2L_7389070_SNP [dm3] 2L_7389070_SNP [dm6]	A	C	5.447e^-4	0.811	NON_SYNONYMOUS_CODING gudu UPSTREAM CG5149
2R	16302031	2R_16302031_SNP [dm3] 2R_20414526_SNP [dm6]	A	C	5.454e^-4	0.811	INTERGENIC
3L	1371210	3L_1371210_SNP [dm3] 3L_1371210_SNP [dm6]	T	C	5.467e^-4	0.811	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
2R	5943862	2R_5943862_SNP [dm3] 2R_10056357_SNP [dm6]	G	A	5.476e^-4	0.811	UPSTREAM magu INTRON magu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11976438	3L_11976438_SNP [dm3] 3L_11983338_SNP [dm6]	A	T	5.481e^-4	0.811	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19123022	2L_19123022_DEL [dm3] 2L_19123022_DEL [dm6]	TG	T	5.488e^-4	0.811	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	19123063	2L_19123063_SNP [dm3] 2L_19123063_SNP [dm6]	C	G	5.488e^-4	0.811	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	5.511e^-4	0.811	DOWNSTREAM Sur INTERGENIC
3L	12632958	3L_12632958_SNP [dm3] 3L_12639858_SNP [dm6]	T	C	5.516e^-4	0.811	INTRON CR32111
2L	19569595	2L_19569595_SNP [dm3] 2L_19569595_SNP [dm6]	T	C	5.518e^-4	0.811	UPSTREAM mir-2a-2 DOWNSTREAM mir-2a-1 & 1 other INTRON spi
2L	19184037	2L_19184037_SNP [dm3] 2L_19184037_SNP [dm6]	T	A	5.535e^-4	0.811	UTR_3_PRIME gammaTub37C UPSTREAM CR17567	TF binding site mE1_TFBS_cad
3R	25883810	3R_25883810_SNP [dm3] 3R_30058088_SNP [dm6]	C	T	5.550e^-4	0.811	UTR_3_PRIME CG34317 & 1 other UPSTREAM sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7453068	2L_7453068_SNP [dm3] 2L_7453068_SNP [dm6]	G	A	5.550e^-4	0.811	SYNONYMOUS_CODING Gr28a	TF binding site mE1_TFBS_HSA
X	20403448	X_20403448_SNP [dm3] X_20532421_SNP [dm6]	C	T	5.574e^-4	0.811	INTERGENIC
3L	3100248	3L_3100248_SNP [dm3] 3L_3100248_SNP [dm6]	C	T	5.574e^-4	0.811	INTRON Cht7
3L	17750910	3L_17750910_SNP [dm3] 3L_17757810_SNP [dm6]	G	T	5.582e^-4	0.811	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3131764	3L_3131764_SNP [dm3] 3L_3131764_SNP [dm6]	T	C	5.593e^-4	0.811	INTRON CG11537	TF binding site mE1_TFBS_Kr
3R	15049813	3R_15049813_SNP [dm3] 3R_19224091_SNP [dm6]	A	G	5.612e^-4	0.811	INTRON vib
X	11506563	X_11506563_SNP [dm3] X_11612530_SNP [dm6]	T	C	5.624e^-4	0.811	NON_SYNONYMOUS_CODING CG1703 UPSTREAM CG2247	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6628403	X_6628403_SNP [dm3] X_6734370_SNP [dm6]	C	T	5.635e^-4	0.811	INTRON CG3168 & 1 other
2L	9309764	2L_9309764_SNP [dm3] 2L_9309764_SNP [dm6]	A	C	5.638e^-4	0.811	INTERGENIC
3L	18221229	3L_18221229_SNP [dm3] 3L_18228129_SNP [dm6]	G	C	5.654e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	5.662e^-4	0.811	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	13366259	X_13366259_SNP [dm3] X_13472226_SNP [dm6]	A	G	5.668e^-4	0.811	INTRON Neto
2R	8619677	2R_8619677_SNP [dm3] 2R_12732172_SNP [dm6]	T	G	5.671e^-4	0.811	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3096558	2R_3096558_SNP [dm3] 2R_7209053_SNP [dm6]	C	A	5.671e^-4	0.811	NON_SYNONYMOUS_CODING pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5810361	3L_5810361_SNP [dm3] 3L_5817261_SNP [dm6]	C	T	5.678e^-4	0.811	INTRON vn	regulatory region REDfly_CRMs
2R	7493307	2R_7493307_SNP [dm3] 2R_11605802_SNP [dm6]	A	G	5.698e^-4	0.811	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	3714669	X_3714669_SNP [dm3] X_3820636_SNP [dm6]	C	T	5.708e^-4	0.811	DOWNSTREAM tRNA:CR32785 INTRON ec
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	5.709e^-4	0.811	INTRON CG2269
3L	12716967	3L_12716967_SNP [dm3] 3L_12723867_SNP [dm6]	T	G	5.722e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	5.736e^-4	0.811	INTRON nAChRalpha3
2R	1575840	2R_1575840_SNP [dm3] 2R_5688335_SNP [dm6]	C	G	5.739e^-4	0.811	INTRON scaf
2R	15046036	2R_15046036_SNP [dm3] 2R_19158531_SNP [dm6]	G	C	5.745e^-4	0.811	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5511377	2L_5511377_DEL [dm3] 2L_5511377_DEL [dm6]	TTATAACATAAATAAGTGGC...	T	5.755e^-4	0.811	INTERGENIC
2R	8513335	2R_8513335_SNP [dm3] 2R_12625830_SNP [dm6]	C	A	5.769e^-4	0.811	UTR_5_PRIME CG17760 DOWNSTREAM CG30054
X	10872188	X_10872188_SNP [dm3] X_10978155_SNP [dm6]	T	C	5.776e^-4	0.811	INTRON CG42339
3R	2135350	3R_2135350_SNP [dm3] 3R_6309628_SNP [dm6]	A	G	5.777e^-4	0.811	UPSTREAM CG31560 & 1 other INTERGENIC
3L	17414577	3L_17414577_SNP [dm3] 3L_17421477_SNP [dm6]	G	A	5.779e^-4	0.811	START_GAINED blot UTR_5_PRIME blot DOWNSTREAM Sec3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11155493	2L_11155493_SNP [dm3] 2L_11155493_SNP [dm6]	A	G	5.782e^-4	0.811	DOWNSTREAM Ca-beta INTRON CG6287	TF binding site mE1_TFBS_Trl
2L	11155646	2L_11155646_SNP [dm3] 2L_11155646_SNP [dm6]	A	C	5.782e^-4	0.811	UTR_5_PRIME CG6287 DOWNSTREAM Ca-beta	TF binding site mE1_TFBS_Trl
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	5.798e^-4	0.811	INTERGENIC
X	6628446	X_6628446_SNP [dm3] X_6734413_SNP [dm6]	C	T	5.811e^-4	0.811	INTRON CG3168 & 1 other
2L	5618676	2L_5618676_SNP [dm3] 2L_5618676_SNP [dm6]	C	G	5.827e^-4	0.811	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10934793	3L_10934793_SNP [dm3] 3L_10941693_SNP [dm6]	T	C	5.834e^-4	0.811	INTERGENIC
X	8227006	X_8227006_DEL [dm3] X_8332973_DEL [dm6]	CCACTTCG	C	5.849e^-4	0.811	INTRON nAChRalpha3
2L	5513802	2L_5513802_INS [dm3] 2L_5513802_INS [dm6]	A	AA	5.850e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	16931653	2R_16931653_SNP [dm3] 2R_21044148_SNP [dm6]	C	G	5.856e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15592083	2R_15592083_SNP [dm3] 2R_19704578_SNP [dm6]	C	T	5.860e^-4	0.811	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
X	5382272	X_5382272_SNP [dm3] X_5488239_SNP [dm6]	G	A	5.865e^-4	0.811	INTRON SPR
2L	8358952	2L_8358952_SNP [dm3] 2L_8358952_SNP [dm6]	C	T	5.867e^-4	0.811	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8986584	2L_8986584_SNP [dm3] 2L_8986584_SNP [dm6]	G	A	5.870e^-4	0.811	INTRON rost
3R	13212685	3R_13212685_SNP [dm3] 3R_17386963_SNP [dm6]	G	A	5.887e^-4	0.811	SYNONYMOUS_CODING lute INTRON Brf	TF binding site mE1_TFBS_chinmo
X	16344120	X_16344120_SNP [dm3] X_16450087_SNP [dm6]	G	A	5.913e^-4	0.811	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
2L	19601508	2L_19601508_SNP [dm3] 2L_19601508_SNP [dm6]	C	A	5.916e^-4	0.811	INTRON CR44978 & 1 other
3L	14890743	3L_14890743_SNP [dm3] 3L_14897643_SNP [dm6]	A	C	5.917e^-4	0.811	INTERGENIC
3R	23312352	3R_23312352_SNP [dm3] 3R_27486630_SNP [dm6]	A	G	5.919e^-4	0.811	INTERGENIC
3R	23312358	3R_23312358_SNP [dm3] 3R_27486636_SNP [dm6]	T	C	5.919e^-4	0.811	INTERGENIC
2L	4113030	2L_4113030_SNP [dm3] 2L_4113030_SNP [dm6]	C	G	5.927e^-4	0.811	INTRON ed
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	5.947e^-4	0.811	UPSTREAM CG12003 INTRON CG7879
3R	14677023	3R_14677023_SNP [dm3] 3R_18851301_SNP [dm6]	A	G	5.957e^-4	0.811	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	19025075	2R_19025075_SNP [dm3] 2R_23137552_SNP [dm6]	G	A	5.964e^-4	0.811	INTERGENIC
2R	19025110	2R_19025110_SNP [dm3] 2R_23137587_SNP [dm6]	G	C	5.964e^-4	0.811	INTERGENIC
3L	1277267	3L_1277267_SNP [dm3] 3L_1277267_SNP [dm6]	C	A	5.974e^-4	0.811	INTRON CG32333
2R	12627316	2R_12627316_SNP [dm3] 2R_16739811_SNP [dm6]	T	A	5.976e^-4	0.811	INTERGENIC
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	5.978e^-4	0.811	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7388888	2L_7388888_SNP [dm3] 2L_7388888_SNP [dm6]	A	G	5.981e^-4	0.811	SYNONYMOUS_CODING gudu UPSTREAM CG5149
X	5973256	X_5973256_SNP [dm3] X_6079223_SNP [dm6]	T	C	5.987e^-4	0.811	NON_SYNONYMOUS_CODING CG4660
2L	18316577	2L_18316577_SNP [dm3] 2L_18316577_SNP [dm6]	C	A	5.996e^-4	0.811	INTERGENIC
X	4937818	X_4937818_SNP [dm3] X_5043785_SNP [dm6]	A	G	6.018e^-4	0.811	INTRON CR44833
X	4937824	X_4937824_SNP [dm3] X_5043791_SNP [dm6]	A	T	6.018e^-4	0.811	INTRON CR44833
2R	10369019	2R_10369019_SNP [dm3] 2R_14481514_SNP [dm6]	A	T	6.020e^-4	0.811	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23487764	3R_23487764_SNP [dm3] 3R_27662042_SNP [dm6]	G	C	6.021e^-4	0.811	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23487765	3R_23487765_SNP [dm3] 3R_27662043_SNP [dm6]	T	C	6.021e^-4	0.811	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18802798	X_18802798_SNP [dm3] X_18908765_SNP [dm6]	T	C	6.027e^-4	0.811	INTRON CG7378
X	9956424	X_9956424_SNP [dm3] X_10062391_SNP [dm6]	A	G	6.030e^-4	0.811	SYNONYMOUS_CODING Gr9a INTRON CG15312
3L	1899674	3L_1899674_SNP [dm3] 3L_1899674_SNP [dm6]	G	A	6.032e^-4	0.811	DOWNSTREAM CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_da
2R	16186636	2R_16186636_SNP [dm3] 2R_20299131_SNP [dm6]	C	A	6.039e^-4	0.811	INTERGENIC
3L	10243247	3L_10243247_SNP [dm3] 3L_10250147_SNP [dm6]	A	T	6.079e^-4	0.811	INTERGENIC
3R	9686515	3R_9686515_SNP [dm3] 3R_13860793_SNP [dm6]	T	G	6.083e^-4	0.811	INTERGENIC
2R	14598495	2R_14598495_SNP [dm3] 2R_18710990_SNP [dm6]	A	G	6.084e^-4	0.811	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14445075	2L_14445075_SNP [dm3] 2L_14445075_SNP [dm6]	C	G	6.110e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	768683	3L_768683_SNP [dm3] 3L_768683_SNP [dm6]	C	T	6.124e^-4	0.811	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	6.131e^-4	0.811	INTRON Rbp2
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	6.140e^-4	0.811	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	6.140e^-4	0.811	INTRON dsx
2R	9344320	2R_9344320_SNP [dm3] 2R_13456815_SNP [dm6]	T	G	6.145e^-4	0.811	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22594460	3L_22594460_SNP [dm3] 3L_22601360_SNP [dm6]	A	G	6.145e^-4	0.811	INTRON CG14459
3L	22598682	3L_22598682_SNP [dm3] 3L_22605582_SNP [dm6]	C	A	6.145e^-4	0.811	UPSTREAM CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad
3L	22599913	3L_22599913_SNP [dm3] 3L_22606813_SNP [dm6]	C	G	6.145e^-4	0.811	SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22622322	3L_22622322_SNP [dm3] 3L_22629222_SNP [dm6]	G	C	6.145e^-4	0.811	INTRON CG14459
3L	22622544	3L_22622544_SNP [dm3] 3L_22629444_SNP [dm6]	C	A	6.145e^-4	0.811	INTRON CG14459
3R	19449095	3R_19449095_SNP [dm3] 3R_23623373_SNP [dm6]	C	A	6.145e^-4	0.811	INTRON CG31145
3R	23314770	3R_23314770_SNP [dm3] 3R_27489048_SNP [dm6]	T	A	6.146e^-4	0.811	INTRON Gr98a
2L	5527016	2L_5527016_SNP [dm3] 2L_5527016_SNP [dm6]	A	T	6.158e^-4	0.811	UTR_5_PRIME CG31648 UPSTREAM CR44793 INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10704568	2L_10704568_SNP [dm3] 2L_10704568_SNP [dm6]	A	G	6.166e^-4	0.811	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	4855192	2L_4855192_SNP [dm3] 2L_4855192_SNP [dm6]	T	C	6.169e^-4	0.811	INTRON pog
3L	11355468	3L_11355468_SNP [dm3] 3L_11362368_SNP [dm6]	G	A	6.169e^-4	0.811	UTR_3_PRIME CG6163 DOWNSTREAM CG6163
3L	18654660	3L_18654660_INS [dm3] 3L_18661560_INS [dm6]	A	AACAGCA	6.169e^-4	0.811	UTR_5_PRIME MYPT-75D
3L	6974308	3L_6974308_SNP [dm3] 3L_6981208_SNP [dm6]	C	T	6.169e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6974644	3L_6974644_SNP [dm3] 3L_6981544_SNP [dm6]	T	C	6.169e^-4	0.811	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6974827	3L_6974827_DEL [dm3] 3L_6981727_DEL [dm6]	TA	G	6.169e^-4	0.811	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6974849	3L_6974849_SNP [dm3] 3L_6981749_SNP [dm6]	A	G	6.169e^-4	0.811	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7219465	3L_7219465_SNP [dm3] 3L_7226365_SNP [dm6]	A	G	6.169e^-4	0.811	INTERGENIC
3L	7219475	3L_7219475_SNP [dm3] 3L_7226375_SNP [dm6]	C	T	6.169e^-4	0.811	INTERGENIC
3L	7219658	3L_7219658_SNP [dm3] 3L_7226558_SNP [dm6]	T	C	6.169e^-4	0.811	INTERGENIC
3L	8038937	3L_8038937_SNP [dm3] 3L_8045837_SNP [dm6]	T	G	6.169e^-4	0.811	INTRON nmo
3L	9406157	3L_9406157_SNP [dm3] 3L_9413057_SNP [dm6]	T	A	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967 INTRON CG3689
3L	9406196	3L_9406196_DEL [dm3] 3L_9413096_DEL [dm6]	TT	T	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967 INTRON CG3689
3L	9406200	3L_9406200_DEL [dm3] 3L_9413100_DEL [dm6]	AC	A	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967 INTRON CG3689
3L	9406222	3L_9406222_SNP [dm3] 3L_9413122_SNP [dm6]	G	A	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967 INTRON CG3689
3L	9406231	3L_9406231_SNP [dm3] 3L_9413131_SNP [dm6]	T	G	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967 INTRON CG3689
3L	9406468	3L_9406468_SNP [dm3] 3L_9413368_SNP [dm6]	A	T	6.169e^-4	0.811	DOWNSTREAM CG3967 INTRON CG3689
3L	9406615	3L_9406615_SNP [dm3] 3L_9413515_SNP [dm6]	T	G	6.169e^-4	0.811	UTR_3_PRIME CG3689 DOWNSTREAM CG3967
3R	15082025	3R_15082025_SNP [dm3] 3R_19256303_SNP [dm6]	C	A	6.169e^-4	0.811	UPSTREAM CG14280 INTERGENIC
3R	20887538	3R_20887538_SNP [dm3] 3R_25061816_SNP [dm6]	T	A	6.169e^-4	0.811	SYNONYMOUS_CODING Unc-13-4B
3R	20901459	3R_20901459_SNP [dm3] 3R_25075737_SNP [dm6]	C	A	6.169e^-4	0.811	SYNONYMOUS_CODING CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20975466	3R_20975466_SNP [dm3] 3R_25149744_SNP [dm6]	C	T	6.169e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	6280844	3R_6280844_SNP [dm3] 3R_10455122_SNP [dm6]	G	A	6.169e^-4	0.811	INTERGENIC
3R	6285741	3R_6285741_SNP [dm3] 3R_10460019_SNP [dm6]	C	T	6.169e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6806733	3R_6806733_SNP [dm3] 3R_10981011_SNP [dm6]	T	C	6.169e^-4	0.811	INTRON CG34114	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5681334	X_5681334_INS [dm3] X_5787301_INS [dm6]	T	TGATTATT	6.169e^-4	0.811	INTRON CG42699
X	5681340	X_5681340_SNP [dm3] X_5787307_SNP [dm6]	C	T	6.169e^-4	0.811	INTRON CG42699
X	5681343	X_5681343_SNP [dm3] X_5787310_SNP [dm6]	A	T	6.169e^-4	0.811	INTRON CG42699
X	5681346	X_5681346_SNP [dm3] X_5787313_SNP [dm6]	T	A	6.169e^-4	0.811	INTRON CG42699
X	5681350	X_5681350_INS [dm3] X_5787317_INS [dm6]	T	TCTCGTCGTTGTGT...	6.169e^-4	0.811	INTRON CG42699
2L	12527304	2L_12527304_SNP [dm3] 2L_12527304_SNP [dm6]	G	T	6.172e^-4	0.811	INTRON bun
2L	4106411	2L_4106411_SNP [dm3] 2L_4106411_SNP [dm6]	T	A	6.179e^-4	0.811	INTRON ed
X	10912796	X_10912796_SNP [dm3] X_11018763_SNP [dm6]	C	T	6.181e^-4	0.811	INTRON CG42339
2L	13735514	2L_13735514_SNP [dm3] 2L_13735514_SNP [dm6]	C	T	6.187e^-4	0.811	UPSTREAM CG31813 INTERGENIC
2L	10181684	2L_10181684_SNP [dm3] 2L_10181684_SNP [dm6]	A	C	6.190e^-4	0.811	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
X	14904432	X_14904432_SNP [dm3] X_15010399_SNP [dm6]	G	A	6.190e^-4	0.811	UTR_3_PRIME hiw DOWNSTREAM hiw & 1 other	TF binding site BDTNP1_TFBS_dl
X	4514344	X_4514344_SNP [dm3] X_4620311_SNP [dm6]	G	T	6.201e^-4	0.811	NON_SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4033240	3R_4033240_SNP [dm3] 3R_8207518_SNP [dm6]	C	G	6.205e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17216611	X_17216611_SNP [dm3] X_17322578_SNP [dm6]	C	T	6.209e^-4	0.811	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	17216663	X_17216663_SNP [dm3] X_17322630_SNP [dm6]	T	G	6.209e^-4	0.811	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	6.213e^-4	0.811	INTRON CR32773
2R	7493345	2R_7493345_SNP [dm3] 2R_11605840_SNP [dm6]	C	A	6.218e^-4	0.811	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10905762	3L_10905762_SNP [dm3] 3L_10912662_SNP [dm6]	A	T	6.222e^-4	0.811	INTERGENIC
2R	15591953	2R_15591953_SNP [dm3] 2R_19704448_SNP [dm6]	C	T	6.233e^-4	0.811	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3L	5338140	3L_5338140_SNP [dm3] 3L_5345040_SNP [dm6]	A	G	6.254e^-4	0.811	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12807199	2L_12807199_SNP [dm3] 2L_12807199_SNP [dm6]	C	T	6.261e^-4	0.811	DOWNSTREAM CR43818 INTERGENIC
2L	12807227	2L_12807227_SNP [dm3] 2L_12807227_SNP [dm6]	A	G	6.261e^-4	0.811	DOWNSTREAM CR43818 INTERGENIC
2R	17757736	2R_17757736_SNP [dm3] 2R_21870231_SNP [dm6]	G	T	6.261e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10755525	3L_10755525_SNP [dm3] 3L_10762425_SNP [dm6]	T	C	6.261e^-4	0.811	INTERGENIC
X	14708468	X_14708468_SNP [dm3] X_14814435_SNP [dm6]	G	A	6.269e^-4	0.811	INTRON rut
2L	4950677	2L_4950677_SNP [dm3] 2L_4950677_SNP [dm6]	T	C	6.273e^-4	0.811	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13108011	2R_13108011_SNP [dm3] 2R_17220506_SNP [dm6]	C	G	6.285e^-4	0.811	INTRON mbl
2L	2293924	2L_2293924_SNP [dm3] 2L_2293924_SNP [dm6]	A	T	6.290e^-4	0.811	INTERGENIC
2L	12807245	2L_12807245_SNP [dm3] 2L_12807245_SNP [dm6]	T	A	6.293e^-4	0.811	DOWNSTREAM CR43818 INTERGENIC
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	6.298e^-4	0.811	UPSTREAM CG2577 INTERGENIC
3R	7984044	3R_7984044_SNP [dm3] 3R_12158322_SNP [dm6]	A	G	6.298e^-4	0.811	INTRON dpr15
2R	18604862	2R_18604862_SNP [dm3] 2R_22717357_SNP [dm6]	T	A	6.300e^-4	0.811	UTR_3_PRIME jbug DOWNSTREAM CG30268
2R	18546443	2R_18546443_SNP [dm3] 2R_22658938_SNP [dm6]	A	G	6.309e^-4	0.811	SYNONYMOUS_CODING CG13510 UTR_5_PRIME CG13511 & 1 other UPSTREAM CG13511
3L	1453486	3L_1453486_SNP [dm3] 3L_1453486_SNP [dm6]	T	A	6.309e^-4	0.811	INTRON Ptp61F
3L	13591135	3L_13591135_INS [dm3] 3L_13598035_INS [dm6]	G	GC	6.316e^-4	0.811	INTRON bru-3
3L	11062735	3L_11062735_SNP [dm3] 3L_11069635_SNP [dm6]	G	T	6.322e^-4	0.811	UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other INTRON CG6310
2L	18972313	2L_18972313_SNP [dm3] 2L_18972313_SNP [dm6]	G	A	6.364e^-4	0.811	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	20702250	2L_20702250_SNP [dm3] 2L_20702250_SNP [dm6]	A	T	6.378e^-4	0.811	INTRON Hr38
2L	19915407	2L_19915407_SNP [dm3] 2L_19915407_SNP [dm6]	G	T	6.379e^-4	0.811	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24420475	3R_24420475_SNP [dm3] 3R_28594753_SNP [dm6]	C	T	6.406e^-4	0.811	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17247765	2L_17247765_SNP [dm3] 2L_17247765_SNP [dm6]	T	G	6.408e^-4	0.811	DOWNSTREAM CR44395 INTRON beat-IIIc
3R	13980082	3R_13980082_SNP [dm3] 3R_18154360_SNP [dm6]	G	A	6.419e^-4	0.811	DOWNSTREAM CG14316 INTERGENIC
2L	7887230	2L_7887230_SNP [dm3] 2L_7887230_SNP [dm6]	G	A	6.428e^-4	0.811	UTR_5_PRIME CG7102 DOWNSTREAM Spn28Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16050182	3L_16050182_INS [dm3] 3L_16057082_INS [dm6]	T	TT	6.443e^-4	0.811	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2L	10570672	2L_10570672_SNP [dm3] 2L_10570672_SNP [dm6]	A	G	6.456e^-4	0.811	INTRON Trim9
2R	4923031	2R_4923031_SNP [dm3] 2R_9035526_SNP [dm6]	A	C	6.458e^-4	0.811	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	6.477e^-4	0.811	INTRON tun	regulatory region REDfly_CRMs
3R	6990239	3R_6990239_SNP [dm3] 3R_11164517_SNP [dm6]	A	G	6.481e^-4	0.811	NON_SYNONYMOUS_CODING Ugt86Dg
2R	10432443	2R_10432443_SNP [dm3] 2R_14544938_SNP [dm6]	T	A	6.482e^-4	0.811	NON_SYNONYMOUS_CODING CG30076 INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3340062	2R_3340062_DEL [dm3] 2R_7452557_DEL [dm6]	TCAT	T	6.497e^-4	0.811	DOWNSTREAM CR45320 INTERGENIC
X	9543795	X_9543795_SNP [dm3] X_9649762_SNP [dm6]	T	C	6.559e^-4	0.811	UTR_5_PRIME l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	6.563e^-4	0.811	SYNONYMOUS_CODING 5-HT1A
3L	1569431	3L_1569431_SNP [dm3] 3L_1569431_SNP [dm6]	A	G	6.586e^-4	0.811	UTR_5_PRIME CG12004 UPSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11062628	3L_11062628_SNP [dm3] 3L_11069528_SNP [dm6]	A	G	6.600e^-4	0.811	SYNONYMOUS_CODING CG6310 UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other
X	7998184	X_7998184_SNP [dm3] X_8104151_SNP [dm6]	A	G	6.610e^-4	0.811	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
3L	8649477	3L_8649477_SNP [dm3] 3L_8656377_SNP [dm6]	A	G	6.622e^-4	0.811	INTERGENIC
3L	18198369	3L_18198369_SNP [dm3] 3L_18205269_SNP [dm6]	C	G	6.631e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16325313	3L_16325313_SNP [dm3] 3L_16332213_SNP [dm6]	T	G	6.641e^-4	0.811	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25558986	3R_25558986_SNP [dm3] 3R_29733264_SNP [dm6]	A	C	6.645e^-4	0.811	UTR_3_PRIME Kul
3L	6788695	3L_6788695_SNP [dm3] 3L_6795595_SNP [dm6]	T	C	6.646e^-4	0.811	DOWNSTREAM vvl INTERGENIC
3L	5141420	3L_5141420_SNP [dm3] 3L_5148320_SNP [dm6]	A	G	6.647e^-4	0.811	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
3R	25547001	3R_25547001_SNP [dm3] 3R_29721279_SNP [dm6]	C	T	6.660e^-4	0.811	SYNONYMOUS_CODING CG15506
2R	13734736	2R_13734736_SNP [dm3] 2R_17847231_SNP [dm6]	T	C	6.668e^-4	0.811	UTR_5_PRIME olf186-M INTRON olf186-F
3L	8488193	3L_8488193_SNP [dm3] 3L_8495093_SNP [dm6]	G	T	6.671e^-4	0.811	INTRON CG43163
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	6.679e^-4	0.811	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4747303	2L_4747303_SNP [dm3] 2L_4747303_SNP [dm6]	A	G	6.686e^-4	0.811	INTRON CG15630
2L	2325690	2L_2325690_SNP [dm3] 2L_2325690_SNP [dm6]	G	C	6.688e^-4	0.811	INTRON CG9967 & 1 other
2R	10317536	2R_10317536_SNP [dm3] 2R_14430031_SNP [dm6]	A	G	6.702e^-4	0.811	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12640707	X_12640707_SNP [dm3] X_12746674_SNP [dm6]	C	T	6.714e^-4	0.811	SYNONYMOUS_CODING CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	19517158	2L_19517158_SNP [dm3] 2L_19517158_SNP [dm6]	C	A	6.724e^-4	0.811	START_GAINED CG10186 UTR_5_PRIME CG10186 UPSTREAM CG10186 DOWNSTREAM CR43363
X	7083128	X_7083128_SNP [dm3] X_7189095_SNP [dm6]	A	T	6.728e^-4	0.811	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	16461933	2L_16461933_SNP [dm3] 2L_16461933_SNP [dm6]	T	C	6.731e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17454300	2L_17454300_SNP [dm3] 2L_17454300_SNP [dm6]	T	C	6.750e^-4	0.811	UTR_3_PRIME CG6639 INTRON CG5050	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7915345	2L_7915345_SNP [dm3] 2L_7915345_SNP [dm6]	C	A	6.792e^-4	0.811	INTRON Snoo	TF binding site BDTNP1_TFBS_twi
X	15126824	X_15126824_SNP [dm3] X_15232791_SNP [dm6]	G	A	6.793e^-4	0.811	INTERGENIC
X	21271395	X_21271395_INS [dm3] X_21400368_INS [dm6]	G	GT	6.793e^-4	0.811	EXON CR45500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21273370	X_21273370_SNP [dm3] X_21402343_SNP [dm6]	A	G	6.793e^-4	0.811	UTR_3_PRIME CG1678 DOWNSTREAM CG1678
3L	11059722	3L_11059722_SNP [dm3] 3L_11066622_SNP [dm6]	G	A	6.797e^-4	0.811	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3L	11059776	3L_11059776_SNP [dm3] 3L_11066676_SNP [dm6]	C	T	6.797e^-4	0.811	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3R	24186904	3R_24186904_SNP [dm3] 3R_28361182_SNP [dm6]	A	T	6.802e^-4	0.811	INTERGENIC
X	15547775	X_15547775_SNP [dm3] X_15653742_SNP [dm6]	T	C	6.806e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	22231242	X_22231242_SNP [dm3] X_22829406_SNP [dm6]	A	T	6.808e^-4	0.811	INTRON fog	TF binding site BDTNP1_TFBS_dl
3L	12093236	3L_12093236_INS [dm3] 3L_12100136_INS [dm6]	G	GCATC	6.809e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18282385	2R_18282385_SNP [dm3] 2R_22394880_SNP [dm6]	T	A	6.810e^-4	0.811	DOWNSTREAM CG13506 INTRON babos
3L	18110792	3L_18110792_SNP [dm3] 3L_18117692_SNP [dm6]	C	T	6.814e^-4	0.811	UTR_3_PRIME CG32195 INTRON CG7341
2L	13876299	2L_13876299_SNP [dm3] 2L_13876299_SNP [dm6]	G	C	6.820e^-4	0.811	INTRON CenG1A
2L	19601425	2L_19601425_SNP [dm3] 2L_19601425_SNP [dm6]	A	G	6.844e^-4	0.811	INTRON CR44978 & 1 other
3R	1906835	3R_1906835_SNP [dm3] 3R_6081113_SNP [dm6]	G	A	6.844e^-4	0.811	INTERGENIC
2L	16366209	2L_16366209_SNP [dm3] 2L_16366209_SNP [dm6]	G	A	6.857e^-4	0.811	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19518213	2L_19518213_SNP [dm3] 2L_19518213_SNP [dm6]	C	A	6.857e^-4	0.811	UPSTREAM CG10132 INTRON CR43363
2L	19518248	2L_19518248_INS [dm3] 2L_19518248_INS [dm6]	T	TA	6.857e^-4	0.811	UPSTREAM CG10132 INTRON CR43363
2R	21067786	2R_21067786_SNP [dm3] 2R_25180263_SNP [dm6]	C	T	6.864e^-4	0.811	INTERGENIC
X	6825735	X_6825735_SNP [dm3] X_6931702_SNP [dm6]	T	A	6.867e^-4	0.811	INTRON CG14431
3L	12241151	3L_12241151_INS [dm3] 3L_12248051_INS [dm6]	G	GG	6.878e^-4	0.811	INTRON app
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	6.897e^-4	0.811	INTRON CenG1A
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	6.899e^-4	0.811	INTRON CG8861
2L	8074413	2L_8074413_SNP [dm3] 2L_8074413_SNP [dm6]	C	T	6.918e^-4	0.811	UTR_3_PRIME Mcr DOWNSTREAM Trf
X	11237615	X_11237615_SNP [dm3] X_11343582_SNP [dm6]	G	A	6.926e^-4	0.811	SYNONYMOUS_CODING CG34348 DOWNSTREAM CG1597
3L	11057868	3L_11057868_SNP [dm3] 3L_11064768_SNP [dm6]	T	C	6.927e^-4	0.811	UTR_5_PRIME CG32075 UPSTREAM SuUR & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7424690	3L_7424690_SNP [dm3] 3L_7431590_SNP [dm6]	G	A	6.930e^-4	0.811	INTRON CG42458
3L	7424696	3L_7424696_SNP [dm3] 3L_7431596_SNP [dm6]	G	A	6.930e^-4	0.811	INTRON CG42458
2L	14433679	2L_14433679_SNP [dm3] 2L_14433679_SNP [dm6]	A	T	6.943e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22160471	3L_22160471_SNP [dm3] 3L_22167371_SNP [dm6]	A	G	6.948e^-4	0.811	INTRON olf413
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	6.964e^-4	0.811	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	23054110	3L_23054110_SNP [dm3] 3L_23061010_SNP [dm6]	T	C	6.972e^-4	0.811	INTERGENIC
2R	19735454	2R_19735454_SNP [dm3] 2R_23847931_SNP [dm6]	C	T	6.981e^-4	0.811	UTR_3_PRIME ytr DOWNSTREAM CG5554
2R	19735459	2R_19735459_INS [dm3] 2R_23847936_INS [dm6]	T	TCATTTGGGTTTC...	6.981e^-4	0.811	UTR_3_PRIME ytr DOWNSTREAM CG5554
2L	10802968	2L_10802968_SNP [dm3] 2L_10802968_SNP [dm6]	G	A	6.984e^-4	0.811	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_inv
2R	20272767	2R_20272767_SNP [dm3] 2R_24385244_SNP [dm6]	A	C	6.985e^-4	0.811	INTRON mAChR-A	TF binding site mE1_TFBS_cad
3L	20174999	3L_20174999_SNP [dm3] 3L_20181899_SNP [dm6]	T	A	6.985e^-4	0.811	INTRON CG42674
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	6.985e^-4	0.811	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20179123	3L_20179123_SNP [dm3] 3L_20186023_SNP [dm6]	T	A	6.985e^-4	0.811	UPSTREAM CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10312989	2L_10312989_SNP [dm3] 2L_10312989_SNP [dm6]	C	T	6.991e^-4	0.811	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12807291	2L_12807291_SNP [dm3] 2L_12807291_SNP [dm6]	C	T	6.991e^-4	0.811	DOWNSTREAM CR43818 INTERGENIC
2L	16994576	2L_16994576_SNP [dm3] 2L_16994576_SNP [dm6]	G	C	6.991e^-4	0.811	DOWNSTREAM beat-IIIb INTERGENIC
2L	967642	2L_967642_SNP [dm3] 2L_967642_SNP [dm6]	T	G	6.991e^-4	0.811	INTERGENIC
2R	17277983	2R_17277983_SNP [dm3] 2R_21390478_SNP [dm6]	C	G	6.991e^-4	0.811	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2R	6758389	2R_6758389_SNP [dm3] 2R_10870884_SNP [dm6]	G	A	6.991e^-4	0.811	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7613824	2R_7613824_SNP [dm3] 2R_11726319_SNP [dm6]	C	T	6.991e^-4	0.811	UTR_3_PRIME pyr	TF binding site mE1_TFBS_cad
3L	1144751	3L_1144751_SNP [dm3] 3L_1144751_SNP [dm6]	C	A	6.991e^-4	0.811	INTRON bab2
3L	1145625	3L_1145625_SNP [dm3] 3L_1145625_SNP [dm6]	A	G	6.991e^-4	0.811	INTRON bab2
3L	11526005	3L_11526005_SNP [dm3] 3L_11532905_SNP [dm6]	C	T	6.991e^-4	0.811	INTRON Mob2
3L	12020149	3L_12020149_SNP [dm3] 3L_12027049_SNP [dm6]	T	C	6.991e^-4	0.811	SYNONYMOUS_CODING rols UPSTREAM CR43994
3L	1323437	3L_1323437_SNP [dm3] 3L_1323437_SNP [dm6]	A	T	6.991e^-4	0.811	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1336557	3L_1336557_SNP [dm3] 3L_1336557_SNP [dm6]	A	G	6.991e^-4	0.811	INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	13949230	3L_13949230_SNP [dm3] 3L_13956130_SNP [dm6]	T	C	6.991e^-4	0.811	INTRON CG32137
3L	7829955	3L_7829955_SNP [dm3] 3L_7836855_SNP [dm6]	T	A	6.991e^-4	0.811	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	8620572	3L_8620572_SNP [dm3] 3L_8627472_SNP [dm6]	T	A	6.991e^-4	0.811	SYNONYMOUS_CODING Zasp66
3R	10579161	3R_10579161_SNP [dm3] 3R_14753439_SNP [dm6]	C	T	6.991e^-4	0.811	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12148968	3R_12148968_SNP [dm3] 3R_16323246_SNP [dm6]	C	G	6.991e^-4	0.811	UPSTREAM CG6901 INTRON Sulf1
3R	4266100	3R_4266100_SNP [dm3] 3R_8440378_SNP [dm6]	C	A	6.991e^-4	0.811	INTRON CG45263
X	21090164	X_21090164_SNP [dm3] X_21219137_SNP [dm6]	T	C	6.991e^-4	0.811	DOWNSTREAM CG32523 INTRON CG32521
X	21225083	X_21225083_SNP [dm3] X_21354056_SNP [dm6]	A	G	6.991e^-4	0.811	INTRON sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21269666	X_21269666_SNP [dm3] X_21398639_SNP [dm6]	G	A	6.991e^-4	0.811	INTERGENIC
X	21318313	X_21318313_SNP [dm3] X_21447286_SNP [dm6]	T	A	6.991e^-4	0.811	INTRON CG42343	TF binding site mE1_TFBS_chinmo
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	6.991e^-4	0.811	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	6.991e^-4	0.811	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	6.991e^-4	0.811	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	6.991e^-4	0.811	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5721050	X_5721050_SNP [dm3] X_5827017_SNP [dm6]	C	T	6.991e^-4	0.811	INTRON CG15765
2R	4371805	2R_4371805_SNP [dm3] 2R_8484300_SNP [dm6]	G	T	7.005e^-4	0.811	UPSTREAM mtt INTRON mtt
2L	11401882	2L_11401882_SNP [dm3] 2L_11401882_SNP [dm6]	A	T	7.011e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	14451086	2L_14451086_SNP [dm3] 2L_14451086_SNP [dm6]	C	T	7.023e^-4	0.811	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	13833347	2R_13833347_SNP [dm3] 2R_17945842_SNP [dm6]	C	A	7.037e^-4	0.811	INTERGENIC
3L	11545080	3L_11545080_SNP [dm3] 3L_11551980_SNP [dm6]	A	C	7.038e^-4	0.811	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	4642796	3L_4642796_SNP [dm3] 3L_4642796_SNP [dm6]	T	G	7.049e^-4	0.811	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	7.054e^-4	0.811	INTRON sick	TF binding site mE1_TFBS_cad
2R	19024614	2R_19024614_SNP [dm3] 2R_23137091_SNP [dm6]	G	T	7.054e^-4	0.811	INTERGENIC
X	22262761	X_22262761_SNP [dm3] X_22860925_SNP [dm6]	A	G	7.061e^-4	0.811	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2R	12631759	2R_12631759_SNP [dm3] 2R_16744254_SNP [dm6]	T	A	7.066e^-4	0.811	DOWNSTREAM Sfp53D & 1 other INTERGENIC
2R	19025120	2R_19025120_SNP [dm3] 2R_23137597_SNP [dm6]	T	C	7.081e^-4	0.811	UPSTREAM CG30192 INTERGENIC
3L	13702145	3L_13702145_SNP [dm3] 3L_13709045_SNP [dm6]	C	G	7.085e^-4	0.811	INTRON bru-3
3L	1176396	3L_1176396_SNP [dm3] 3L_1176396_SNP [dm6]	T	G	7.099e^-4	0.811	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6568874	2R_6568874_SNP [dm3] 2R_10681369_SNP [dm6]	T	A	7.104e^-4	0.811	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12807255	2L_12807255_SNP [dm3] 2L_12807255_SNP [dm6]	A	G	7.119e^-4	0.811	DOWNSTREAM CR43818 INTERGENIC
3L	13343437	3L_13343437_SNP [dm3] 3L_13350337_SNP [dm6]	G	T	7.126e^-4	0.811	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9957403	X_9957403_SNP [dm3] X_10063370_SNP [dm6]	G	A	7.139e^-4	0.811	DOWNSTREAM Gr9a INTRON CG15312
3L	8459232	3L_8459232_SNP [dm3] 3L_8466132_SNP [dm6]	T	C	7.143e^-4	0.811	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4180739	2L_4180739_SNP [dm3] 2L_4180739_SNP [dm6]	A	G	7.155e^-4	0.811	INTERGENIC
2R	2343284	2R_2343284_MNP [dm3] 2R_6455779_MNP [dm6]	GTTG	ACCC	7.170e^-4	0.811	INTERGENIC	transposable element FlyBase
2R	8607984	2R_8607984_SNP [dm3] 2R_12720479_SNP [dm6]	T	G	7.171e^-4	0.811	INTRON CG42663
3L	3768930	3L_3768930_SNP [dm3] 3L_3768930_SNP [dm6]	T	C	7.177e^-4	0.811	INTRON CG32264
2R	17339580	2R_17339580_SNP [dm3] 2R_21452075_SNP [dm6]	A	G	7.186e^-4	0.811	INTRON Sdc
3R	24427738	3R_24427738_SNP [dm3] 3R_28602016_SNP [dm6]	A	T	7.195e^-4	0.811	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 1 other INTRON Hrb98DE EXON snoRNA:Psi28S-3405b
2L	14434598	2L_14434598_SNP [dm3] 2L_14434598_SNP [dm6]	T	C	7.202e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8762745	2L_8762745_SNP [dm3] 2L_8762745_SNP [dm6]	T	G	7.217e^-4	0.811	INTERGENIC
2L	19518267	2L_19518267_INS [dm3] 2L_19518267_INS [dm6]	A	ACATTAACGGCCGTAGGACC...	7.225e^-4	0.811	UPSTREAM CG10132 EXON CR43363
3R	13211282	3R_13211282_SNP [dm3] 3R_17385560_SNP [dm6]	A	G	7.230e^-4	0.811	UPSTREAM lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	7342759	2L_7342759_SNP [dm3] 2L_7342759_SNP [dm6]	C	A	7.233e^-4	0.811	INTRON Wnt6	TF binding site mE1_TFBS_inv
2L	5486641	2L_5486641_SNP [dm3] 2L_5486641_SNP [dm6]	A	C	7.241e^-4	0.811	UPSTREAM CR45287 INTERGENIC
3L	11240738	3L_11240738_SNP [dm3] 3L_11247638_SNP [dm6]	G	T	7.257e^-4	0.811	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15737284	2L_15737284_SNP [dm3] 2L_15737284_SNP [dm6]	C	G	7.262e^-4	0.811	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	1786822	2L_1786822_SNP [dm3] 2L_1786822_SNP [dm6]	C	T	7.265e^-4	0.811	INTERGENIC
2L	2011962	2L_2011962_SNP [dm3] 2L_2011962_SNP [dm6]	C	T	7.284e^-4	0.811	INTRON CG4238
2R	13955173	2R_13955173_SNP [dm3] 2R_18067668_SNP [dm6]	G	T	7.284e^-4	0.811	INTRON CG34386
3L	18654677	3L_18654677_SNP [dm3] 3L_18661577_SNP [dm6]	C	T	7.284e^-4	0.811	UTR_5_PRIME MYPT-75D
3R	12723790	3R_12723790_DEL [dm3] 3R_16898068_DEL [dm6]	ACCATGGTT	A	7.284e^-4	0.811	DOWNSTREAM CR43617 INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
X	18062117	X_18062117_SNP [dm3] X_18168084_SNP [dm6]	A	T	7.284e^-4	0.811	INTRON Frq1
2R	8716071	2R_8716071_SNP [dm3] 2R_12828566_SNP [dm6]	C	T	7.285e^-4	0.811	INTERGENIC
2L	1719114	2L_1719114_SNP [dm3] 2L_1719114_SNP [dm6]	C	T	7.287e^-4	0.811	INTRON Rim2
3L	1108341	3L_1108341_SNP [dm3] 3L_1108341_SNP [dm6]	C	T	7.287e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11924542	3L_11924542_SNP [dm3] 3L_11931442_SNP [dm6]	C	T	7.287e^-4	0.811	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11924551	3L_11924551_SNP [dm3] 3L_11931451_SNP [dm6]	T	A	7.287e^-4	0.811	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11937940	3L_11937940_SNP [dm3] 3L_11944840_SNP [dm6]	T	C	7.287e^-4	0.811	UTR_5_PRIME CG5883
3L	1214092	3L_1214092_SNP [dm3] 3L_1214092_SNP [dm6]	G	C	7.287e^-4	0.811	DOWNSTREAM LysE INTRON mwh
3L	13017533	3L_13017533_SNP [dm3] 3L_13024433_SNP [dm6]	T	C	7.287e^-4	0.811	SYNONYMOUS_CODING RpS12 DOWNSTREAM snoRNA:Me28S-A774b & 2 others	TF binding site mE1_TFBS_cad
3L	20212101	3L_20212101_SNP [dm3] 3L_20219001_SNP [dm6]	C	T	7.287e^-4	0.811	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3L	5191752	3L_5191752_SNP [dm3] 3L_5198652_SNP [dm6]	G	A	7.287e^-4	0.811	INTRON shep
3R	13211266	3R_13211266_SNP [dm3] 3R_17385544_SNP [dm6]	A	T	7.287e^-4	0.811	UPSTREAM lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	13211269	3R_13211269_SNP [dm3] 3R_17385547_SNP [dm6]	A	G	7.287e^-4	0.811	UPSTREAM lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	21601409	3R_21601409_SNP [dm3] 3R_25775687_SNP [dm6]	A	T	7.287e^-4	0.811	NON_SYNONYMOUS_CODING CG17196 UPSTREAM CG17197 & 1 other DOWNSTREAM CG17195
3R	3676587	3R_3676587_SNP [dm3] 3R_7850865_SNP [dm6]	A	C	7.287e^-4	0.811	INTRON CG34384	TF binding site mE1_TFBS_Trl
X	22262007	X_22262007_SNP [dm3] X_22860171_SNP [dm6]	C	T	7.287e^-4	0.811	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22262113	X_22262113_SNP [dm3] X_22860277_SNP [dm6]	C	G	7.287e^-4	0.811	INTRON CG42346	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22262474	X_22262474_SNP [dm3] X_22860638_SNP [dm6]	C	G	7.287e^-4	0.811	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	22262672	X_22262672_SNP [dm3] X_22860836_SNP [dm6]	T	C	7.287e^-4	0.811	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13591132	3L_13591132_SNP [dm3] 3L_13598032_SNP [dm6]	T	C	7.303e^-4	0.811	INTRON bru-3
X	7319392	X_7319392_SNP [dm3] X_7425359_SNP [dm6]	T	C	7.309e^-4	0.811	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	767635	2L_767635_SNP [dm3] 2L_767635_SNP [dm6]	A	G	7.315e^-4	0.811	INTERGENIC
2R	16580769	2R_16580769_SNP [dm3] 2R_20693264_SNP [dm6]	A	G	7.325e^-4	0.811	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
X	3258020	X_3258020_SNP [dm3] X_3363987_SNP [dm6]	T	C	7.338e^-4	0.811	INTERGENIC
2R	19926808	2R_19926808_SNP [dm3] 2R_24039285_SNP [dm6]	T	A	7.351e^-4	0.811	SYNONYMOUS_CODING IntS1
X	4937015	X_4937015_SNP [dm3] X_5042982_SNP [dm6]	A	T	7.354e^-4	0.811	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12724658	3L_12724658_SNP [dm3] 3L_12731558_SNP [dm6]	C	G	7.358e^-4	0.811	INTERGENIC
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	7.360e^-4	0.811	UTR_5_PRIME CG15706
2L	964006	2L_964006_SNP [dm3] 2L_964006_SNP [dm6]	C	G	7.365e^-4	0.811	INTERGENIC
X	21354726	X_21354726_SNP [dm3] X_21483699_SNP [dm6]	C	T	7.367e^-4	0.811	UPSTREAM CR45511 INTERGENIC
2R	16145036	2R_16145036_SNP [dm3] 2R_20257531_SNP [dm6]	T	A	7.368e^-4	0.811	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10695790	3L_10695790_SNP [dm3] 3L_10702690_SNP [dm6]	T	A	7.386e^-4	0.811	INTERGENIC
2R	18144487	2R_18144487_SNP [dm3] 2R_22256982_SNP [dm6]	A	G	7.387e^-4	0.811	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19452087	X_19452087_SNP [dm3] X_19558054_SNP [dm6]	G	A	7.392e^-4	0.811	UPSTREAM mir-4966 & 3 others DOWNSTREAM mir-2499 INTERGENIC
2L	7389624	2L_7389624_SNP [dm3] 2L_7389624_SNP [dm6]	C	G	7.392e^-4	0.811	SYNONYMOUS_CODING gudu
2L	7388357	2L_7388357_SNP [dm3] 2L_7388357_SNP [dm6]	T	G	7.401e^-4	0.811	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16132455	2L_16132455_SNP [dm3] 2L_16132455_SNP [dm6]	C	G	7.402e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13411984	2L_13411984_SNP [dm3] 2L_13411984_SNP [dm6]	A	T	7.411e^-4	0.811	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
3R	10628088	3R_10628088_SNP [dm3] 3R_14802366_SNP [dm6]	C	T	7.420e^-4	0.811	SYNONYMOUS_CODING CG14857	TF binding site mE1_TFBS_cad
3R	6362434	3R_6362434_SNP [dm3] 3R_10536712_SNP [dm6]	G	C	7.430e^-4	0.811	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	11314544	3L_11314544_SNP [dm3] 3L_11321444_SNP [dm6]	T	C	7.453e^-4	0.811	SYNONYMOUS_CODING CG6168
3R	10585177	3R_10585177_SNP [dm3] 3R_14759455_SNP [dm6]	C	T	7.453e^-4	0.811	INTRON jvl
3R	12274601	3R_12274601_SNP [dm3] 3R_16448879_SNP [dm6]	A	T	7.453e^-4	0.811	INTRON Pak3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8984990	2L_8984990_SNP [dm3] 2L_8984990_SNP [dm6]	C	G	7.461e^-4	0.811	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4674884	2R_4674884_SNP [dm3] 2R_8787379_SNP [dm6]	A	G	7.468e^-4	0.811	INTERGENIC
3L	7337504	3L_7337504_DEL [dm3] 3L_7344404_DEL [dm6]	CCC	C	7.470e^-4	0.811	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	7.472e^-4	0.811	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
3R	14032718	3R_14032718_SNP [dm3] 3R_18206996_SNP [dm6]	A	T	7.473e^-4	0.811	INTRON CG7985
3L	16363371	3L_16363371_SNP [dm3] 3L_16370271_SNP [dm6]	T	A	7.478e^-4	0.811	DOWNSTREAM CG4842 & 1 other INTRON CG18814
3L	9412062	3L_9412062_SNP [dm3] 3L_9418962_SNP [dm6]	G	A	7.482e^-4	0.811	SYNONYMOUS_CODING CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	7.495e^-4	0.811	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	2735815	2R_2735815_SNP [dm3] 2R_6848310_SNP [dm6]	C	T	7.514e^-4	0.811	INTERGENIC
2R	7482896	2R_7482896_SNP [dm3] 2R_11595391_SNP [dm6]	A	C	7.528e^-4	0.811	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

absoluteCS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results