DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.813e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2045 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8141858	2R_8141858_SNP [dm3] 2R_12254353_SNP [dm6]	A	T	1.194e^-6	0.819	SPLICE_SITE_REGION CG13168 UTR_5_PRIME CG13168
3R	22280917	3R_22280917_SNP [dm3] 3R_26455195_SNP [dm6]	T	C	1.466e^-6	0.819	DOWNSTREAM Pdf & 2 others INTERGENIC
3L	10588484	3L_10588484_INS [dm3] 3L_10595384_INS [dm6]	T	TT	1.976e^-6	0.819	INTERGENIC
3L	12756205	3L_12756205_SNP [dm3] 3L_12763105_SNP [dm6]	G	A	2.289e^-6	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8141859	2R_8141859_SNP [dm3] 2R_12254354_SNP [dm6]	A	T	2.973e^-6	0.819	SPLICE_SITE_REGION CG13168 START_GAINED CG13168 UTR_5_PRIME CG13168
2L	15031843	2L_15031843_SNP [dm3] 2L_15031843_SNP [dm6]	T	A	3.412e^-6	0.819	UPSTREAM CG31832 INTRON GABA-B-R1
3R	6278986	3R_6278986_SNP [dm3] 3R_10453264_SNP [dm6]	T	G	4.280e^-6	0.819	INTERGENIC
2R	8143442	2R_8143442_SNP [dm3] 2R_12255937_SNP [dm6]	T	A	5.571e^-6	0.819	DOWNSTREAM CG13168 INTERGENIC
X	12730510	X_12730510_SNP [dm3] X_12836477_SNP [dm6]	C	A	5.611e^-6	0.819	INTRON Pde9
3L	12755893	3L_12755893_SNP [dm3] 3L_12762793_SNP [dm6]	A	C	6.066e^-6	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14940692	3R_14940692_SNP [dm3] 3R_19114970_SNP [dm6]	T	A	6.353e^-6	0.819	INTRON CG6040
2L	885738	2L_885738_SNP [dm3] 2L_885738_SNP [dm6]	G	C	8.586e^-6	0.819	UPSTREAM CG15824 INTERGENIC
3L	10588645	3L_10588645_DEL [dm3] 3L_10595545_DEL [dm6]	GG	G	8.629e^-6	0.819	INTERGENIC
X	11021623	X_11021623_SNP [dm3] X_11127590_SNP [dm6]	G	T	9.110e^-6	0.819	SYNONYMOUS_CODING Gtp-bp DOWNSTREAM Rpt3	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3529676	X_3529676_SNP [dm3] X_3635643_SNP [dm6]	A	C	1.094e^-5	0.819	INTRON AstA-R1
2R	8141880	2R_8141880_SNP [dm3] 2R_12254375_SNP [dm6]	A	C	1.109e^-5	0.819	INTRON CG13168
3L	749007	3L_749007_SNP [dm3] 3L_749007_SNP [dm6]	A	G	1.126e^-5	0.819	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14996840	2R_14996840_SNP [dm3] 2R_19109335_SNP [dm6]	G	A	1.183e^-5	0.819	INTRON 5-HT1A
2R	10889145	2R_10889145_SNP [dm3] 2R_15001640_SNP [dm6]	T	C	1.272e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	16666807	2R_16666807_SNP [dm3] 2R_20779302_SNP [dm6]	A	T	1.291e^-5	0.819	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2R	76537	2R_76537_SNP [dm3] 2R_4189032_SNP [dm6]	T	C	1.294e^-5	0.819	UPSTREAM CG40127 INTERGENIC
3R	22282264	3R_22282264_SNP [dm3] 3R_26456542_SNP [dm6]	A	C	1.345e^-5	0.819	UPSTREAM CG14237 & 1 other INTERGENIC
3R	9746531	3R_9746531_SNP [dm3] 3R_13920809_SNP [dm6]	C	T	1.378e^-5	0.819	INTERGENIC
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	1.386e^-5	0.819	INTRON aret
2R	8141876	2R_8141876_SNP [dm3] 2R_12254371_SNP [dm6]	A	G	1.403e^-5	0.819	INTRON CG13168
3L	23430259	3L_23430259_SNP [dm3] 3L_23437159_SNP [dm6]	A	T	1.413e^-5	0.819	INTERGENIC
3L	12753034	3L_12753034_SNP [dm3] 3L_12759934_SNP [dm6]	T	G	1.413e^-5	0.819	INTRON CG32113
2L	4121650	2L_4121650_SNP [dm3] 2L_4121650_SNP [dm6]	A	G	1.566e^-5	0.819	UPSTREAM Sr-CI DOWNSTREAM Sr-CIII INTERGENIC
3L	12756169	3L_12756169_SNP [dm3] 3L_12763069_SNP [dm6]	C	T	1.633e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9616759	2L_9616759_SNP [dm3] 2L_9616759_SNP [dm6]	A	C	1.662e^-5	0.819	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8047217	3R_8047217_DEL [dm3] 3R_12221495_DEL [dm6]	AGGTA	A	1.680e^-5	0.819	UPSTREAM CG10014 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9874062	2L_9874062_SNP [dm3] 2L_9874062_SNP [dm6]	C	T	1.691e^-5	0.819	INTRON nAChRalpha6
X	7438840	X_7438840_SNP [dm3] X_7544807_SNP [dm6]	T	C	1.710e^-5	0.819	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10919711	2R_10919711_SNP [dm3] 2R_15032206_SNP [dm6]	C	T	1.730e^-5	0.819	INTRON hbs	TF binding site BDTNP1_TFBS_twi
X	7439033	X_7439033_SNP [dm3] X_7545000_SNP [dm6]	A	C	1.772e^-5	0.819	INTRON CG32719	TF binding site mE1_TFBS_Trl
3L	18242176	3L_18242176_SNP [dm3] 3L_18249076_SNP [dm6]	A	C	1.780e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12752982	3L_12752982_SNP [dm3] 3L_12759882_SNP [dm6]	C	T	1.785e^-5	0.819	NON_SYNONYMOUS_CODING CG32113
3R	15839063	3R_15839063_SNP [dm3] 3R_20013341_SNP [dm6]	T	A	1.793e^-5	0.819	UPSTREAM CG4836 INTRON CG17190
3R	4444479	3R_4444479_SNP [dm3] 3R_8618757_SNP [dm6]	T	A	1.868e^-5	0.819	INTRON 5-HT2B
3L	5860181	3L_5860181_SNP [dm3] 3L_5867081_SNP [dm6]	C	A	1.892e^-5	0.819	INTERGENIC
2R	9120685	2R_9120685_SNP [dm3] 2R_13233180_SNP [dm6]	T	C	1.965e^-5	0.819	INTRON CG4670	TF binding site mE1_TFBS_cad
3L	12755788	3L_12755788_SNP [dm3] 3L_12762688_SNP [dm6]	C	T	2.034e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA
2R	16666693	2R_16666693_SNP [dm3] 2R_20779188_SNP [dm6]	A	G	2.075e^-5	0.819	SYNONYMOUS_CODING CG43711
2L	9616849	2L_9616849_SNP [dm3] 2L_9616849_SNP [dm6]	G	A	2.115e^-5	0.819	UTR_5_PRIME GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	3530568	X_3530568_SNP [dm3] X_3636535_SNP [dm6]	T	A	2.189e^-5	0.819	INTRON AstA-R1	transposable element FlyBase
X	5442715	X_5442715_SNP [dm3] X_5548682_SNP [dm6]	A	G	2.219e^-5	0.819	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	7055577	2R_7055577_SNP [dm3] 2R_11168072_SNP [dm6]	A	T	2.417e^-5	0.819	INTRON shn & 1 other
2L	12552325	2L_12552325_SNP [dm3] 2L_12552325_SNP [dm6]	A	T	2.425e^-5	0.819	INTERGENIC
3L	748989	3L_748989_SNP [dm3] 3L_748989_SNP [dm6]	A	G	2.464e^-5	0.819	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11247764	2R_11247764_SNP [dm3] 2R_15360259_SNP [dm6]	G	C	2.476e^-5	0.819	INTRON unc-5
3L	18352929	3L_18352929_SNP [dm3] 3L_18359829_SNP [dm6]	A	G	2.520e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22208901	2L_22208901_SNP [dm3] 2L_22208901_SNP [dm6]	C	A	2.607e^-5	0.819	INTRON Ir40a	transposable element FlyBase
2R	8139295	2R_8139295_SNP [dm3] 2R_12251790_SNP [dm6]	G	T	2.631e^-5	0.819	INTERGENIC
3L	887366	3L_887366_SNP [dm3] 3L_887366_SNP [dm6]	T	G	2.709e^-5	0.819	UPSTREAM CG32479 INTRON CG32479
3R	12438806	3R_12438806_SNP [dm3] 3R_16613084_SNP [dm6]	A	T	2.723e^-5	0.819	SYNONYMOUS_CODING CG12783 DOWNSTREAM CG10340
3L	9617491	3L_9617491_SNP [dm3] 3L_9624391_SNP [dm6]	T	A	2.752e^-5	0.819	DOWNSTREAM LanB2 INTRON CG3335
X	5388686	X_5388686_SNP [dm3] X_5494653_SNP [dm6]	C	A	2.753e^-5	0.819	SYNONYMOUS_CODING frma DOWNSTREAM SPR
X	14759189	X_14759189_SNP [dm3] X_14865156_SNP [dm6]	A	G	2.760e^-5	0.819	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16665509	2R_16665509_SNP [dm3] 2R_20778004_SNP [dm6]	A	C	2.761e^-5	0.819	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	22284611	3R_22284611_SNP [dm3] 3R_26458889_SNP [dm6]	C	A	2.817e^-5	0.819	INTRON CG14238
2R	8143747	2R_8143747_SNP [dm3] 2R_12256242_SNP [dm6]	T	A	2.881e^-5	0.819	DOWNSTREAM CG13168 INTERGENIC
X	20941182	X_20941182_SNP [dm3] X_21070155_SNP [dm6]	A	T	2.898e^-5	0.819	INTRON bves	TF binding site BDTNP1_TFBS_twi
3R	20774714	3R_20774714_SNP [dm3] 3R_24948992_SNP [dm6]	G	C	2.905e^-5	0.819	INTRON CG13646
3L	887357	3L_887357_SNP [dm3] 3L_887357_SNP [dm6]	G	A	2.906e^-5	0.819	UPSTREAM CG32479 INTRON CG32479
3L	887358	3L_887358_SNP [dm3] 3L_887358_SNP [dm6]	G	A	2.988e^-5	0.819	UPSTREAM CG32479 INTRON CG32479
2R	8140770	2R_8140770_SNP [dm3] 2R_12253265_SNP [dm6]	C	T	2.998e^-5	0.819	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6151000	2L_6151000_SNP [dm3] 2L_6151000_SNP [dm6]	T	C	2.999e^-5	0.819	UPSTREAM Muc26B INTERGENIC
2R	16667689	2R_16667689_SNP [dm3] 2R_20780184_SNP [dm6]	G	T	3.000e^-5	0.819	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3L	6523672	3L_6523672_DEL [dm3] 3L_6530572_DEL [dm6]	TGAAG	T	3.028e^-5	0.819	UPSTREAM CG32396 INTRON sfl
2L	9439202	2L_9439202_SNP [dm3] 2L_9439202_SNP [dm6]	T	C	3.079e^-5	0.819	DOWNSTREAM CG33723 INTRON numb
X	3530291	X_3530291_SNP [dm3] X_3636258_SNP [dm6]	A	G	3.121e^-5	0.819	INTRON AstA-R1
3L	12752556	3L_12752556_SNP [dm3] 3L_12759456_SNP [dm6]	A	G	3.176e^-5	0.819	SYNONYMOUS_CODING CG32113
X	3530224	X_3530224_SNP [dm3] X_3636191_SNP [dm6]	G	A	3.265e^-5	0.819	INTRON AstA-R1
3L	10904778	3L_10904778_SNP [dm3] 3L_10911678_SNP [dm6]	C	T	3.277e^-5	0.819	INTERGENIC
3L	12754861	3L_12754861_SNP [dm3] 3L_12761761_SNP [dm6]	C	T	3.437e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7718150	3L_7718150_SNP [dm3] 3L_7725050_SNP [dm6]	G	A	3.445e^-5	0.819	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5442720	X_5442720_SNP [dm3] X_5548687_SNP [dm6]	A	G	3.561e^-5	0.819	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	3530299	X_3530299_SNP [dm3] X_3636266_SNP [dm6]	T	A	3.616e^-5	0.819	INTRON AstA-R1
2R	7053182	2R_7053182_SNP [dm3] 2R_11165677_SNP [dm6]	C	G	3.619e^-5	0.819	INTRON shn & 1 other
X	7444982	X_7444982_DEL [dm3] X_7550949_DEL [dm6]	AA	A	3.645e^-5	0.819	INTERGENIC
3R	6284752	3R_6284752_SNP [dm3] 3R_10459030_SNP [dm6]	A	G	3.670e^-5	0.819	INTERGENIC
2L	12552183	2L_12552183_SNP [dm3] 2L_12552183_SNP [dm6]	G	A	3.691e^-5	0.819	INTERGENIC
2L	12552184	2L_12552184_SNP [dm3] 2L_12552184_SNP [dm6]	A	G	3.691e^-5	0.819	INTERGENIC
3L	10456079	3L_10456079_SNP [dm3] 3L_10462979_SNP [dm6]	A	G	3.819e^-5	0.819	SYNONYMOUS_CODING Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1685015	3L_1685015_SNP [dm3] 3L_1685015_SNP [dm6]	C	T	3.886e^-5	0.819	INTRON CG7991
2L	3279070	2L_3279070_SNP [dm3] 2L_3279070_SNP [dm6]	T	C	3.936e^-5	0.819	INTRON CG3332
3R	13158337	3R_13158337_SNP [dm3] 3R_17332615_SNP [dm6]	G	A	4.007e^-5	0.819	SYNONYMOUS_CODING beat-IIa
X	7439140	X_7439140_SNP [dm3] X_7545107_SNP [dm6]	C	T	4.085e^-5	0.819	INTRON CG32719
X	3530084	X_3530084_SNP [dm3] X_3636051_SNP [dm6]	A	G	4.104e^-5	0.819	INTRON AstA-R1
X	16148529	X_16148529_SNP [dm3] X_16254496_SNP [dm6]	C	T	4.104e^-5	0.819	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7439090	X_7439090_SNP [dm3] X_7545057_SNP [dm6]	T	A	4.177e^-5	0.819	INTRON CG32719
2R	8140268	2R_8140268_SNP [dm3] 2R_12252763_SNP [dm6]	G	A	4.186e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	749107	3L_749107_SNP [dm3] 3L_749107_SNP [dm6]	A	G	4.222e^-5	0.819	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12755797	3L_12755797_SNP [dm3] 3L_12762697_SNP [dm6]	C	T	4.223e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA
2L	9873958	2L_9873958_SNP [dm3] 2L_9873958_SNP [dm6]	A	G	4.227e^-5	0.819	INTRON nAChRalpha6
3L	12755980	3L_12755980_SNP [dm3] 3L_12762880_SNP [dm6]	C	T	4.411e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16613806	2R_16613806_SNP [dm3] 2R_20726301_SNP [dm6]	A	G	4.453e^-5	0.819	INTRON dpr
3L	895902	3L_895902_SNP [dm3] 3L_895902_SNP [dm6]	T	G	4.501e^-5	0.819	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
2L	959705	2L_959705_SNP [dm3] 2L_959705_SNP [dm6]	A	T	4.606e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3530451	X_3530451_SNP [dm3] X_3636418_SNP [dm6]	G	A	4.690e^-5	0.819	INTRON AstA-R1
2L	9439257	2L_9439257_SNP [dm3] 2L_9439257_SNP [dm6]	T	C	4.737e^-5	0.819	DOWNSTREAM CG33723 INTRON numb
3L	5884141	3L_5884141_SNP [dm3] 3L_5891041_SNP [dm6]	C	G	4.779e^-5	0.819	INTERGENIC
2L	12603558	2L_12603558_SNP [dm3] 2L_12603558_SNP [dm6]	A	T	4.793e^-5	0.819	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	20574389	X_20574389_SNP [dm3] X_20703362_SNP [dm6]	C	T	4.839e^-5	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	12752287	3L_12752287_SNP [dm3] 3L_12759187_SNP [dm6]	T	C	4.867e^-5	0.819	NON_SYNONYMOUS_CODING CG32113
2L	15835300	2L_15835300_SNP [dm3] 2L_15835300_SNP [dm6]	C	T	5.002e^-5	0.819	SYNONYMOUS_CODING CG18518 UPSTREAM CR45368
X	7444974	X_7444974_SNP [dm3] X_7550941_SNP [dm6]	C	A	5.011e^-5	0.819	INTERGENIC
3R	6300333	3R_6300333_SNP [dm3] 3R_10474611_SNP [dm6]	T	A	5.032e^-5	0.819	INTERGENIC
X	3529537	X_3529537_SNP [dm3] X_3635504_SNP [dm6]	C	T	5.079e^-5	0.819	INTRON AstA-R1
3L	7720477	3L_7720477_SNP [dm3] 3L_7727377_SNP [dm6]	C	A	5.092e^-5	0.819	UPSTREAM CG7457 DOWNSTREAM CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16665531	2R_16665531_INS [dm3] 2R_20778026_INS [dm6]	G	GTTTAG	5.141e^-5	0.819	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3L	890785	3L_890785_SNP [dm3] 3L_890785_SNP [dm6]	G	T	5.179e^-5	0.819	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12755758	3L_12755758_SNP [dm3] 3L_12762658_SNP [dm6]	A	G	5.200e^-5	0.819	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA
3R	19701428	3R_19701428_SNP [dm3] 3R_23875706_SNP [dm6]	A	C	5.208e^-5	0.819	INTRON Pli
3R	6254419	3R_6254419_SNP [dm3] 3R_10428697_SNP [dm6]	C	T	5.225e^-5	0.819	INTERGENIC
X	7444979	X_7444979_SNP [dm3] X_7550946_SNP [dm6]	A	T	5.249e^-5	0.819	INTERGENIC
2L	4831599	2L_4831599_SNP [dm3] 2L_4831599_SNP [dm6]	C	T	5.261e^-5	0.819	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10023038	X_10023038_SNP [dm3] X_10129005_SNP [dm6]	A	C	5.263e^-5	0.819	INTRON CR44894 & 1 other
3L	10163806	3L_10163806_SNP [dm3] 3L_10170706_SNP [dm6]	T	C	5.415e^-5	0.819	INTRON dpr10
3R	6850636	3R_6850636_SNP [dm3] 3R_11024914_SNP [dm6]	G	T	5.427e^-5	0.819	INTRON CG34114
3R	17167400	3R_17167400_SNP [dm3] 3R_21341678_SNP [dm6]	G	T	5.446e^-5	0.819	INTRON CG16791	TF binding site BDTNP1_TFBS_da
3L	10692129	3L_10692129_SNP [dm3] 3L_10699029_SNP [dm6]	C	T	5.475e^-5	0.819	INTERGENIC
3L	5860166	3L_5860166_SNP [dm3] 3L_5867066_SNP [dm6]	G	C	5.478e^-5	0.819	INTERGENIC
3L	2502727	3L_2502727_SNP [dm3] 3L_2502727_SNP [dm6]	C	T	5.486e^-5	0.819	SPLICE_SITE_REGION CG16758 UTR_5_PRIME CG16758 INTRON CG16758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21457268	3R_21457268_SNP [dm3] 3R_25631546_SNP [dm6]	A	T	5.539e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3787061	3L_3787061_SNP [dm3] 3L_3787061_SNP [dm6]	T	A	5.596e^-5	0.819	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16666838	2R_16666838_SNP [dm3] 2R_20779333_SNP [dm6]	C	T	5.638e^-5	0.819	NON_SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2R	7044261	2R_7044261_SNP [dm3] 2R_11156756_SNP [dm6]	G	A	5.735e^-5	0.819	INTRON CG13229
X	4565321	X_4565321_SNP [dm3] X_4671288_SNP [dm6]	G	C	5.750e^-5	0.819	INTRON rap
2R	8140764	2R_8140764_SNP [dm3] 2R_12253259_SNP [dm6]	C	T	5.775e^-5	0.819	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15472659	2R_15472659_SNP [dm3] 2R_19585154_SNP [dm6]	A	G	5.785e^-5	0.819	INTRON sm
3L	3625935	3L_3625935_SNP [dm3] 3L_3625935_SNP [dm6]	C	A	5.805e^-5	0.819	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20774627	3R_20774627_SNP [dm3] 3R_24948905_SNP [dm6]	C	T	5.838e^-5	0.819	SYNONYMOUS_CODING CG13646
2L	953638	2L_953638_SNP [dm3] 2L_953638_SNP [dm6]	T	C	5.865e^-5	0.819	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9442941	X_9442941_SNP [dm3] X_9548908_SNP [dm6]	A	G	5.950e^-5	0.819	INTRON CG32700
3L	12763558	3L_12763558_SNP [dm3] 3L_12770458_SNP [dm6]	T	A	5.973e^-5	0.819	NON_SYNONYMOUS_CODING Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16387035	2L_16387035_SNP [dm3] 2L_16387035_SNP [dm6]	G	A	5.980e^-5	0.819	INTERGENIC
2L	960188	2L_960188_SNP [dm3] 2L_960188_SNP [dm6]	A	C	6.190e^-5	0.825	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3984221	2R_3984221_SNP [dm3] 2R_8096716_SNP [dm6]	G	A	6.239e^-5	0.825	NON_SYNONYMOUS_CODING CG8713 DOWNSTREAM CG8712
2R	10889139	2R_10889139_SNP [dm3] 2R_15001634_SNP [dm6]	A	C	6.251e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	18160821	2R_18160821_SNP [dm3] 2R_22273316_SNP [dm6]	G	A	6.295e^-5	0.825	INTRON dve	TF binding site mE1_TFBS_chinmo
3L	4678024	3L_4678024_SNP [dm3] 3L_4678024_SNP [dm6]	G	A	6.329e^-5	0.825	SYNONYMOUS_CODING CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8140886	2R_8140886_SNP [dm3] 2R_12253381_SNP [dm6]	T	C	6.394e^-5	0.825	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4985638	3R_4985638_SNP [dm3] 3R_9159916_SNP [dm6]	G	T	6.519e^-5	0.825	INTRON pum
X	3529346	X_3529346_SNP [dm3] X_3635313_SNP [dm6]	T	A	6.545e^-5	0.825	INTRON AstA-R1
2R	8140905	2R_8140905_SNP [dm3] 2R_12253400_SNP [dm6]	T	A	6.556e^-5	0.825	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12079171	3L_12079171_SNP [dm3] 3L_12086071_SNP [dm6]	C	T	6.573e^-5	0.825	INTERGENIC
2L	9615409	2L_9615409_SNP [dm3] 2L_9615409_SNP [dm6]	G	A	6.609e^-5	0.825	SYNONYMOUS_CODING Trx-2
2R	8143441	2R_8143441_SNP [dm3] 2R_12255936_SNP [dm6]	A	T	6.648e^-5	0.825	DOWNSTREAM CG13168 INTERGENIC
2R	8143445	2R_8143445_INS [dm3] 2R_12255940_INS [dm6]	T	TT	6.648e^-5	0.825	DOWNSTREAM CG13168 INTERGENIC
X	7489390	X_7489390_SNP [dm3] X_7595357_SNP [dm6]	A	C	6.778e^-5	0.825	INTERGENIC	regulatory region REDfly_CRMs
2L	5331607	2L_5331607_SNP [dm3] 2L_5331607_SNP [dm6]	C	T	6.786e^-5	0.825	SYNONYMOUS_CODING fusl
3L	1286947	3L_1286947_SNP [dm3] 3L_1286947_SNP [dm6]	T	A	6.795e^-5	0.825	INTRON CG32333
2R	13502728	2R_13502728_SNP [dm3] 2R_17615223_SNP [dm6]	G	A	6.817e^-5	0.825	INTRON CG10936	TF binding site mE1_TFBS_inv
3L	1282686	3L_1282686_SNP [dm3] 3L_1282686_SNP [dm6]	C	T	6.821e^-5	0.825	INTRON CG32333
3R	6272334	3R_6272334_SNP [dm3] 3R_10446612_SNP [dm6]	C	T	7.131e^-5	0.846	INTERGENIC
2R	5681217	2R_5681217_SNP [dm3] 2R_9793712_SNP [dm6]	C	T	7.134e^-5	0.846	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
2R	7423227	2R_7423227_SNP [dm3] 2R_11535722_SNP [dm6]	A	G	7.180e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12137576	2L_12137576_SNP [dm3] 2L_12137576_SNP [dm6]	A	G	7.190e^-5	0.846	UPSTREAM Gr33a INTERGENIC
2R	4940486	2R_4940486_SNP [dm3] 2R_9052981_SNP [dm6]	C	A	7.215e^-5	0.846	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12756007	3L_12756007_SNP [dm3] 3L_12762907_SNP [dm6]	T	C	7.394e^-5	0.861	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9873483	2L_9873483_SNP [dm3] 2L_9873483_SNP [dm6]	G	A	7.474e^-5	0.865	INTRON nAChRalpha6
2R	16455457	2R_16455457_SNP [dm3] 2R_20567952_SNP [dm6]	C	G	7.556e^-5	0.869	INTRON qsm	TF binding site mE1_TFBS_chinmo
2L	10181684	2L_10181684_SNP [dm3] 2L_10181684_SNP [dm6]	A	C	7.644e^-5	0.872	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2R	8140742	2R_8140742_DEL [dm3] 2R_12253237_DEL [dm6]	TGCTAGCTCATTT...	T	7.778e^-5	0.872	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16613805	2R_16613805_SNP [dm3] 2R_20726300_SNP [dm6]	A	G	7.800e^-5	0.872	INTRON dpr
3R	16348289	3R_16348289_SNP [dm3] 3R_20522567_SNP [dm6]	T	A	7.810e^-5	0.872	INTERGENIC
2L	9615439	2L_9615439_SNP [dm3] 2L_9615439_SNP [dm6]	C	T	7.833e^-5	0.872	SYNONYMOUS_CODING Trx-2
2R	8143576	2R_8143576_SNP [dm3] 2R_12256071_SNP [dm6]	C	T	7.892e^-5	0.872	DOWNSTREAM CG13168 INTERGENIC
3L	12752178	3L_12752178_SNP [dm3] 3L_12759078_SNP [dm6]	T	C	8.013e^-5	0.872	INTRON CG32113
2L	4015838	2L_4015838_SNP [dm3] 2L_4015838_SNP [dm6]	C	T	8.095e^-5	0.872	INTERGENIC
3L	12752156	3L_12752156_SNP [dm3] 3L_12759056_SNP [dm6]	C	G	8.205e^-5	0.872	INTRON CG32113
2R	6892065	2R_6892065_SNP [dm3] 2R_11004560_SNP [dm6]	C	A	8.214e^-5	0.872	INTRON luna
2R	16667923	2R_16667923_SNP [dm3] 2R_20780418_SNP [dm6]	T	A	8.304e^-5	0.872	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6151055	2L_6151055_SNP [dm3] 2L_6151055_SNP [dm6]	T	A	8.312e^-5	0.872	UPSTREAM Muc26B INTERGENIC
2R	7029197	2R_7029197_SNP [dm3] 2R_11141692_SNP [dm6]	T	G	8.380e^-5	0.872	SYNONYMOUS_CODING CG13229
3L	12753745	3L_12753745_SNP [dm3] 3L_12760645_SNP [dm6]	A	G	8.395e^-5	0.872	NON_SYNONYMOUS_CODING CG32113
2R	8143438	2R_8143438_SNP [dm3] 2R_12255933_SNP [dm6]	T	A	8.449e^-5	0.872	DOWNSTREAM CG13168 INTERGENIC
2L	3264118	2L_3264118_SNP [dm3] 2L_3264118_SNP [dm6]	T	C	8.477e^-5	0.872	DOWNSTREAM CR45706 INTERGENIC
3L	7874019	3L_7874019_SNP [dm3] 3L_7880919_SNP [dm6]	T	A	8.487e^-5	0.872	INTRON CG32365
2L	7710187	2L_7710187_SNP [dm3] 2L_7710187_SNP [dm6]	G	C	8.538e^-5	0.872	SYNONYMOUS_CODING Tep3 UPSTREAM Ntl INTRON CR44990	TF binding site mE1_TFBS_cad
3R	6850641	3R_6850641_INS [dm3] 3R_11024919_INS [dm6]	A	AATATA	8.622e^-5	0.872	INTRON CG34114
2R	12466987	2R_12466987_SNP [dm3] 2R_16579482_SNP [dm6]	C	T	8.730e^-5	0.872	UTR_5_PRIME Cdk4 UPSTREAM Cdk4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12755522	3L_12755522_SNP [dm3] 3L_12762422_SNP [dm6]	C	T	8.818e^-5	0.872	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12751991	3L_12751991_SNP [dm3] 3L_12758891_SNP [dm6]	T	A	8.820e^-5	0.872	INTRON CG32113
2R	18613146	2R_18613146_SNP [dm3] 2R_22725641_SNP [dm6]	A	G	8.909e^-5	0.872	INTRON jbug
2R	18320697	2R_18320697_SNP [dm3] 2R_22433192_SNP [dm6]	T	C	9.030e^-5	0.872	INTERGENIC
2R	16667773	2R_16667773_SNP [dm3] 2R_20780268_SNP [dm6]	T	G	9.054e^-5	0.872	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
3L	867876	3L_867876_SNP [dm3] 3L_867876_SNP [dm6]	G	T	9.063e^-5	0.872	INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3530121	X_3530121_SNP [dm3] X_3636088_SNP [dm6]	T	C	9.081e^-5	0.872	INTRON AstA-R1
2L	9874001	2L_9874001_SNP [dm3] 2L_9874001_SNP [dm6]	T	A	9.098e^-5	0.872	INTRON nAChRalpha6
2R	8155250	2R_8155250_SNP [dm3] 2R_12267745_SNP [dm6]	G	T	9.167e^-5	0.872	INTRON Cam
2R	16666843	2R_16666843_SNP [dm3] 2R_20779338_SNP [dm6]	G	A	9.202e^-5	0.872	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
3R	21457267	3R_21457267_SNP [dm3] 3R_25631545_SNP [dm6]	G	A	9.249e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1639847	2L_1639847_SNP [dm3] 2L_1639847_SNP [dm6]	A	T	9.306e^-5	0.872	INTERGENIC
3L	5860146	3L_5860146_SNP [dm3] 3L_5867046_SNP [dm6]	C	T	9.306e^-5	0.872	INTERGENIC
X	7433006	X_7433006_SNP [dm3] X_7538973_SNP [dm6]	A	C	9.311e^-5	0.872	INTRON CG32719
3L	12091886	3L_12091886_SNP [dm3] 3L_12098786_SNP [dm6]	A	T	9.325e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19700311	X_19700311_SNP [dm3] X_19806278_SNP [dm6]	C	T	9.458e^-5	0.872	INTERGENIC
X	3530148	X_3530148_SNP [dm3] X_3636115_SNP [dm6]	A	G	9.483e^-5	0.872	INTRON AstA-R1
3L	13012147	3L_13012147_SNP [dm3] 3L_13019047_SNP [dm6]	C	T	9.553e^-5	0.872	SYNONYMOUS_CODING ste14 DOWNSTREAM AdenoK EXON CR45445
3R	24147113	3R_24147113_SNP [dm3] 3R_28321391_SNP [dm6]	T	C	9.791e^-5	0.872	NON_SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12755904	3L_12755904_SNP [dm3] 3L_12762804_SNP [dm6]	A	G	9.868e^-5	0.872	NON_SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	888960	3L_888960_INS [dm3] 3L_888960_INS [dm6]	C	CAAGTGGACCGGC...	9.925e^-5	0.872		TF binding site mE1_TFBS_chinmo
2L	9873997	2L_9873997_SNP [dm3] 2L_9873997_SNP [dm6]	A	T	9.933e^-5	0.872	INTRON nAChRalpha6
3R	6254531	3R_6254531_SNP [dm3] 3R_10428809_SNP [dm6]	G	C	1.005e^-4	0.872	INTERGENIC
3R	6850646	3R_6850646_SNP [dm3] 3R_11024924_SNP [dm6]	A	T	1.008e^-4	0.872	INTRON CG34114
2R	17098498	2R_17098498_SNP [dm3] 2R_21210993_SNP [dm6]	G	A	1.010e^-4	0.872	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
X	4877956	X_4877956_SNP [dm3] X_4983923_SNP [dm6]	T	C	1.016e^-4	0.872	INTRON CR44833	regulatory region REDfly_CRMs
2R	18806320	2R_18806320_SNP [dm3] 2R_22918797_SNP [dm6]	G	A	1.018e^-4	0.872	UPSTREAM CG30187 DOWNSTREAM Nup214 INTERGENIC
3L	6517628	3L_6517628_SNP [dm3] 3L_6524528_SNP [dm6]	A	T	1.023e^-4	0.872	INTRON sfl
2R	14996567	2R_14996567_SNP [dm3] 2R_19109062_SNP [dm6]	T	C	1.027e^-4	0.872	SYNONYMOUS_CODING 5-HT1A
2R	19530243	2R_19530243_SNP [dm3] 2R_23642720_SNP [dm6]	T	G	1.029e^-4	0.872	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	7438942	X_7438942_SNP [dm3] X_7544909_SNP [dm6]	T	C	1.032e^-4	0.872	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9612633	3L_9612633_SNP [dm3] 3L_9619533_SNP [dm6]	G	A	1.040e^-4	0.872	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
X	570997	X_570997_SNP [dm3] X_676964_SNP [dm6]	A	C	1.043e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22279814	3R_22279814_SNP [dm3] 3R_26454092_SNP [dm6]	G	A	1.055e^-4	0.872	UTR_3_PRIME CG5447 UPSTREAM CG43117
X	3530304	X_3530304_SNP [dm3] X_3636271_SNP [dm6]	C	A	1.066e^-4	0.872	INTRON AstA-R1
X	15258250	X_15258250_INS [dm3] X_15364217_INS [dm6]	G	GAGC	1.092e^-4	0.872	INTRON acj6
X	15258252	X_15258252_SNP [dm3] X_15364219_SNP [dm6]	A	G	1.092e^-4	0.872	INTRON acj6
3L	6519841	3L_6519841_SNP [dm3] 3L_6526741_SNP [dm6]	G	A	1.094e^-4	0.872	INTRON sfl
2R	10175892	2R_10175892_SNP [dm3] 2R_14288387_SNP [dm6]	A	C	1.098e^-4	0.872	UPSTREAM Ih INTRON Ih
X	13198403	X_13198403_DEL [dm3] X_13304370_DEL [dm6]	CGGCCGCCCGCCC...	C	1.104e^-4	0.872	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6850650	3R_6850650_SNP [dm3] 3R_11024928_SNP [dm6]	C	A	1.111e^-4	0.872	INTRON CG34114
3L	12999466	3L_12999466_SNP [dm3] 3L_13006366_SNP [dm6]	T	C	1.114e^-4	0.872	UPSTREAM CG11263 INTERGENIC
X	8240572	X_8240572_INS [dm3] X_8346539_INS [dm6]	C	CGC	1.119e^-4	0.872	INTRON nAChRalpha3
3L	15746081	3L_15746081_SNP [dm3] 3L_15752981_SNP [dm6]	T	C	1.120e^-4	0.872	INTERGENIC
X	15338508	X_15338508_SNP [dm3] X_15444475_SNP [dm6]	T	A	1.129e^-4	0.872	INTERGENIC
2R	19530247	2R_19530247_SNP [dm3] 2R_23642724_SNP [dm6]	C	T	1.136e^-4	0.872	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	12137597	2L_12137597_SNP [dm3] 2L_12137597_SNP [dm6]	C	T	1.141e^-4	0.872	UPSTREAM Gr33a INTERGENIC
3L	12083098	3L_12083098_SNP [dm3] 3L_12089998_SNP [dm6]	T	G	1.142e^-4	0.872	DOWNSTREAM CG17154 INTERGENIC
2R	8132190	2R_8132190_SNP [dm3] 2R_12244685_SNP [dm6]	G	A	1.143e^-4	0.872	UTR_5_PRIME CG43244
2L	5331242	2L_5331242_SNP [dm3] 2L_5331242_SNP [dm6]	G	A	1.145e^-4	0.872	DOWNSTREAM TotM INTRON fusl
X	14760221	X_14760221_SNP [dm3] X_14866188_SNP [dm6]	T	G	1.149e^-4	0.872	UTR_5_PRIME CG9518 INTRON Flo2
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	1.151e^-4	0.872	DOWNSTREAM Sur INTERGENIC
2R	6122968	2R_6122968_SNP [dm3] 2R_10235463_SNP [dm6]	A	G	1.151e^-4	0.872	UPSTREAM CG12912 & 1 other INTRON Hr46
2L	7715589	2L_7715589_SNP [dm3] 2L_7715589_SNP [dm6]	A	T	1.153e^-4	0.872	NON_SYNONYMOUS_CODING CG33296
2R	17677673	2R_17677673_SNP [dm3] 2R_21790168_SNP [dm6]	T	G	1.160e^-4	0.872	SYNONYMOUS_CODING lox2
2R	7180216	2R_7180216_SNP [dm3] 2R_11292711_SNP [dm6]	A	T	1.169e^-4	0.872	SPLICE_SITE_REGION CG30033 SYNONYMOUS_CODING CG30033 INTRON dare	TF binding site mE1_TFBS_sens
2L	5679157	2L_5679157_SNP [dm3] 2L_5679157_SNP [dm6]	C	G	1.176e^-4	0.872	UTR_3_PRIME CG12511
2R	16845292	2R_16845292_SNP [dm3] 2R_20957787_SNP [dm6]	A	G	1.182e^-4	0.872	INTRON hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7039004	2R_7039004_SNP [dm3] 2R_11151499_SNP [dm6]	C	T	1.183e^-4	0.872	INTRON CG13229
3R	15839291	3R_15839291_SNP [dm3] 3R_20013569_SNP [dm6]	A	G	1.187e^-4	0.872	UPSTREAM CG4836 & 1 other INTERGENIC
3L	3787144	3L_3787144_SNP [dm3] 3L_3787144_SNP [dm6]	T	G	1.211e^-4	0.872	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7845349	2L_7845349_SNP [dm3] 2L_7845349_SNP [dm6]	T	G	1.214e^-4	0.872	UTR_3_PRIME CG14535
2R	10941247	2R_10941247_SNP [dm3] 2R_15053742_SNP [dm6]	C	T	1.234e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21030991	3R_21030991_SNP [dm3] 3R_25205269_SNP [dm6]	G	C	1.244e^-4	0.872	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	23980597	3R_23980597_SNP [dm3] 3R_28154875_SNP [dm6]	A	G	1.244e^-4	0.872	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	13012153	3L_13012153_SNP [dm3] 3L_13019053_SNP [dm6]	T	C	1.250e^-4	0.872	SYNONYMOUS_CODING ste14 DOWNSTREAM AdenoK EXON CR45445
3R	20724529	3R_20724529_SNP [dm3] 3R_24898807_SNP [dm6]	T	C	1.254e^-4	0.872	NON_SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15839309	3R_15839309_SNP [dm3] 3R_20013587_SNP [dm6]	T	C	1.255e^-4	0.872	UPSTREAM CG4836 & 1 other INTERGENIC
X	19091953	X_19091953_SNP [dm3] X_19197920_SNP [dm6]	G	A	1.259e^-4	0.872	UTR_3_PRIME CG7990
2R	7180199	2R_7180199_SNP [dm3] 2R_11292694_SNP [dm6]	A	T	1.261e^-4	0.872	INTRON dare & 1 other	TF binding site mE1_TFBS_sens
3R	8082655	3R_8082655_SNP [dm3] 3R_12256933_SNP [dm6]	T	C	1.261e^-4	0.872	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	6255457	3R_6255457_SNP [dm3] 3R_10429735_SNP [dm6]	T	A	1.280e^-4	0.872	INTERGENIC
2R	8142248	2R_8142248_SNP [dm3] 2R_12254743_SNP [dm6]	A	G	1.282e^-4	0.872	SYNONYMOUS_CODING CG13168
3R	21510634	3R_21510634_SNP [dm3] 3R_25684912_SNP [dm6]	T	G	1.291e^-4	0.872	DOWNSTREAM CLS INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	6446439	2L_6446439_SNP [dm3] 2L_6446439_SNP [dm6]	G	T	1.296e^-4	0.872	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	887413	3L_887413_SNP [dm3] 3L_887413_SNP [dm6]	T	C	1.298e^-4	0.872	UPSTREAM CG32479 INTRON CG32479
3R	16967060	3R_16967060_SNP [dm3] 3R_21141338_SNP [dm6]	G	A	1.299e^-4	0.872	DOWNSTREAM meigo INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14569461	3R_14569461_SNP [dm3] 3R_18743739_SNP [dm6]	T	G	1.303e^-4	0.872	UPSTREAM Mekk1 DOWNSTREAM CG7718 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10163837	3L_10163837_SNP [dm3] 3L_10170737_SNP [dm6]	T	G	1.309e^-4	0.872	INTRON dpr10
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	1.318e^-4	0.872	DOWNSTREAM CR44545 INTERGENIC
3L	887227	3L_887227_SNP [dm3] 3L_887227_SNP [dm6]	T	A	1.322e^-4	0.872	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_dl
2L	1495876	2L_1495876_SNP [dm3] 2L_1495876_SNP [dm6]	G	C	1.331e^-4	0.872	NON_SYNONYMOUS_CODING CG31926 DOWNSTREAM CG33128
2R	8137578	2R_8137578_SNP [dm3] 2R_12250073_SNP [dm6]	G	A	1.333e^-4	0.872	INTERGENIC
2R	17275397	2R_17275397_SNP [dm3] 2R_21387892_SNP [dm6]	A	C	1.339e^-4	0.872	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
3L	5008821	3L_5008821_SNP [dm3] 3L_5008821_SNP [dm6]	G	A	1.349e^-4	0.872	INTRON Con
3L	12752155	3L_12752155_SNP [dm3] 3L_12759055_SNP [dm6]	C	A	1.352e^-4	0.872	INTRON CG32113
X	7489241	X_7489241_SNP [dm3] X_7595208_SNP [dm6]	G	T	1.353e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3L	11458965	3L_11458965_DEL [dm3] 3L_11465865_DEL [dm6]	CC	C	1.370e^-4	0.872	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	18817629	2L_18817629_SNP [dm3] 2L_18817629_SNP [dm6]	C	A	1.371e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20774597	3R_20774597_SNP [dm3] 3R_24948875_SNP [dm6]	T	C	1.372e^-4	0.872	SYNONYMOUS_CODING CG13646
3L	398147	3L_398147_SNP [dm3] 3L_398147_SNP [dm6]	A	T	1.379e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	16455486	2R_16455486_SNP [dm3] 2R_20567981_SNP [dm6]	T	C	1.381e^-4	0.872	INTRON qsm	TF binding site mE1_TFBS_chinmo
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	1.382e^-4	0.872	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2L	10639633	2L_10639633_SNP [dm3] 2L_10639633_SNP [dm6]	T	A	1.382e^-4	0.872	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2L	10639634	2L_10639634_SNP [dm3] 2L_10639634_SNP [dm6]	T	C	1.382e^-4	0.872	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2L	4965104	2L_4965104_SNP [dm3] 2L_4965104_SNP [dm6]	C	T	1.394e^-4	0.872	SYNONYMOUS_CODING CG34124 UPSTREAM CG34125 EXON CR43824	TF binding site mE1_TFBS_cad
X	7489608	X_7489608_DEL [dm3] X_7595575_DEL [dm6]	CTCGGCTACCTTTTCAC...	C	1.394e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
2L	16504053	2L_16504053_INS [dm3] 2L_16504053_INS [dm6]	T	TC	1.395e^-4	0.872	INTRON Tpr2
2R	16666690	2R_16666690_SNP [dm3] 2R_20779185_SNP [dm6]	T	C	1.400e^-4	0.872	SYNONYMOUS_CODING CG43711
2R	19530238	2R_19530238_INS [dm3] 2R_23642715_INS [dm6]	A	GCCAAAG	1.403e^-4	0.872	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	20774747	3R_20774747_SNP [dm3] 3R_24949025_SNP [dm6]	A	G	1.405e^-4	0.872	INTRON CG13646
2R	5681218	2R_5681218_SNP [dm3] 2R_9793713_SNP [dm6]	T	C	1.407e^-4	0.872	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
2R	8153391	2R_8153391_DEL [dm3] 2R_12265886_DEL [dm6]	TTG	T	1.408e^-4	0.872	INTRON Cam
X	564349	X_564349_DEL [dm3] X_670316_DEL [dm6]	TCACCACAGGGGGCGGCGGG...	T	1.415e^-4	0.872	INTERGENIC
X	3352289	X_3352289_DEL [dm3] X_3458256_DEL [dm6]	TT	T	1.431e^-4	0.872	DOWNSTREAM CG16782 INTRON CR44999
2R	8139152	2R_8139152_DEL [dm3] 2R_12251647_DEL [dm6]	CGAGAACTGGGCTGGGTGCC...	C	1.431e^-4	0.872	INTERGENIC
3L	5860163	3L_5860163_SNP [dm3] 3L_5867063_SNP [dm6]	A	T	1.433e^-4	0.872	INTERGENIC
2L	9615546	2L_9615546_SNP [dm3] 2L_9615546_SNP [dm6]	A	G	1.437e^-4	0.872	SYNONYMOUS_CODING Trx-2 UPSTREAM GlcAT-S
2R	16667900	2R_16667900_DEL [dm3] 2R_20780395_DEL [dm6]	GGAAT	G	1.440e^-4	0.872	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8140921	2R_8140921_SNP [dm3] 2R_12253416_SNP [dm6]	T	C	1.454e^-4	0.872	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3571794	3L_3571794_SNP [dm3] 3L_3571794_SNP [dm6]	C	A	1.462e^-4	0.872	INTRON Eip63E
X	11912492	X_11912492_INS [dm3] X_12018459_INS [dm6]	T	TT	1.463e^-4	0.872	UPSTREAM CG15735 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	3508363	3L_3508363_SNP [dm3] 3L_3508363_SNP [dm6]	G	A	1.465e^-4	0.872	NON_SYNONYMOUS_CODING CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9164720	3R_9164720_SNP [dm3] 3R_13338998_SNP [dm6]	A	G	1.471e^-4	0.872	INTRON PK2-R1
2L	9874025	2L_9874025_SNP [dm3] 2L_9874025_SNP [dm6]	C	A	1.472e^-4	0.872	INTRON nAChRalpha6
3L	8744136	3L_8744136_SNP [dm3] 3L_8751036_SNP [dm6]	T	A	1.480e^-4	0.872	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9789350	2R_9789350_SNP [dm3] 2R_13901845_SNP [dm6]	T	C	1.482e^-4	0.872	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	14366999	X_14366999_SNP [dm3] X_14472966_SNP [dm6]	G	A	1.486e^-4	0.872	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15846391	2L_15846391_SNP [dm3] 2L_15846391_SNP [dm6]	A	G	1.496e^-4	0.872	UPSTREAM CR43763 INTERGENIC
X	14760485	X_14760485_SNP [dm3] X_14866452_SNP [dm6]	C	T	1.501e^-4	0.872	UTR_5_PRIME CG9518 INTRON Flo2
X	14760486	X_14760486_SNP [dm3] X_14866453_SNP [dm6]	C	T	1.501e^-4	0.872	UTR_5_PRIME CG9518 INTRON Flo2
X	20817125	X_20817125_SNP [dm3] X_20946098_SNP [dm6]	G	T	1.502e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15776837	2R_15776837_SNP [dm3] 2R_19889332_SNP [dm6]	T	A	1.508e^-4	0.872	INTERGENIC
3R	4985662	3R_4985662_SNP [dm3] 3R_9159940_SNP [dm6]	A	T	1.519e^-4	0.872	INTRON pum
2R	18072500	2R_18072500_SNP [dm3] 2R_22184995_SNP [dm6]	G	C	1.521e^-4	0.872	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10181600	2L_10181600_SNP [dm3] 2L_10181600_SNP [dm6]	C	G	1.524e^-4	0.872	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
3R	18261114	3R_18261114_SNP [dm3] 3R_22435392_SNP [dm6]	A	G	1.525e^-4	0.872	INTRON CG13847
2L	3056518	2L_3056518_SNP [dm3] 2L_3056518_SNP [dm6]	C	A	1.527e^-4	0.872	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13522848	3R_13522848_SNP [dm3] 3R_17697126_SNP [dm6]	C	G	1.532e^-4	0.872	INTRON osa	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	3645037	2L_3645037_SNP [dm3] 2L_3645037_SNP [dm6]	A	T	1.532e^-4	0.872	INTRON for
3R	12929201	3R_12929201_SNP [dm3] 3R_17103479_SNP [dm6]	T	C	1.543e^-4	0.872	INTRON cher
X	626476	X_626476_SNP [dm3] X_732443_SNP [dm6]	A	T	1.544e^-4	0.872	INTRON sdk
2R	8151558	2R_8151558_SNP [dm3] 2R_12264053_SNP [dm6]	T	C	1.556e^-4	0.872	UPSTREAM Cam INTRON Cam
X	14366970	X_14366970_SNP [dm3] X_14472937_SNP [dm6]	T	C	1.557e^-4	0.872	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12736899	3L_12736899_SNP [dm3] 3L_12743799_SNP [dm6]	C	T	1.560e^-4	0.872	SYNONYMOUS_CODING CG32112
X	14367471	X_14367471_SNP [dm3] X_14473438_SNP [dm6]	G	T	1.568e^-4	0.872	SYNONYMOUS_CODING CG9411	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17322667	3L_17322667_SNP [dm3] 3L_17329567_SNP [dm6]	C	T	1.586e^-4	0.872	UPSTREAM Or74a INTERGENIC
2L	3648513	2L_3648513_SNP [dm3] 2L_3648513_SNP [dm6]	G	C	1.595e^-4	0.872	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20375355	3R_20375355_SNP [dm3] 3R_24549633_SNP [dm6]	A	G	1.596e^-4	0.872	INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1281434	3L_1281434_SNP [dm3] 3L_1281434_SNP [dm6]	G	T	1.597e^-4	0.872	INTRON CG32333
3R	24974112	3R_24974112_SNP [dm3] 3R_29148390_SNP [dm6]	G	A	1.600e^-4	0.872	UTR_5_PRIME Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	8134290	2R_8134290_SNP [dm3] 2R_12246785_SNP [dm6]	A	C	1.613e^-4	0.872	EXON CR44315
3L	12751619	3L_12751619_SNP [dm3] 3L_12758519_SNP [dm6]	T	G	1.615e^-4	0.872	INTRON CG32113	TF binding site mE1_TFBS_inv
3R	18813829	3R_18813829_SNP [dm3] 3R_22988107_SNP [dm6]	C	T	1.623e^-4	0.872	SYNONYMOUS_CODING Or94a INTRON Nha2
X	3528865	X_3528865_SNP [dm3] X_3634832_SNP [dm6]	C	A	1.623e^-4	0.872	INTRON AstA-R1
3L	2080672	3L_2080672_SNP [dm3] 3L_2080672_SNP [dm6]	T	C	1.628e^-4	0.872	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6911322	3R_6911322_SNP [dm3] 3R_11085600_SNP [dm6]	A	G	1.633e^-4	0.872	UPSTREAM CR44940 INTERGENIC
3R	19592587	3R_19592587_SNP [dm3] 3R_23766865_SNP [dm6]	A	G	1.635e^-4	0.872	SYNONYMOUS_CODING CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	6519484	3L_6519484_SNP [dm3] 3L_6526384_SNP [dm6]	T	C	1.637e^-4	0.872	INTRON sfl
X	16795361	X_16795361_SNP [dm3] X_16901328_SNP [dm6]	C	T	1.638e^-4	0.872	DOWNSTREAM CR44754 INTERGENIC
2R	6874668	2R_6874668_DEL [dm3] 2R_10987163_DEL [dm6]	GG	G	1.645e^-4	0.872	INTRON luna
3L	12719939	3L_12719939_SNP [dm3] 3L_12726839_SNP [dm6]	T	C	1.646e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7718567	3L_7718567_SNP [dm3] 3L_7725467_SNP [dm6]	T	C	1.648e^-4	0.872	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16198071	2R_16198071_SNP [dm3] 2R_20310566_SNP [dm6]	C	A	1.652e^-4	0.872	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8147432	2R_8147432_DEL [dm3] 2R_12259927_DEL [dm6]	GGACG	G	1.654e^-4	0.872	UPSTREAM Cam INTRON Cam & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12750374	3L_12750374_SNP [dm3] 3L_12757274_SNP [dm6]	T	C	1.655e^-4	0.872	SYNONYMOUS_CODING CG32113
3L	1133875	3L_1133875_SNP [dm3] 3L_1133875_SNP [dm6]	C	T	1.657e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3R	9164242	3R_9164242_INS [dm3] 3R_13338520_INS [dm6]	A	AA	1.658e^-4	0.872	UTR_5_PRIME PK2-R1
2R	16667884	2R_16667884_SNP [dm3] 2R_20780379_SNP [dm6]	A	G	1.667e^-4	0.872	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14366912	X_14366912_SNP [dm3] X_14472879_SNP [dm6]	G	A	1.674e^-4	0.872	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13181560	3R_13181560_SNP [dm3] 3R_17355838_SNP [dm6]	A	T	1.690e^-4	0.872	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2R	16670126	2R_16670126_SNP [dm3] 2R_20782621_SNP [dm6]	G	A	1.691e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_sens
2R	8120916	2R_8120916_SNP [dm3] 2R_12233411_SNP [dm6]	G	A	1.698e^-4	0.872	DOWNSTREAM CR44313 INTERGENIC
X	8278282	X_8278282_SNP [dm3] X_8384249_SNP [dm6]	C	A	1.702e^-4	0.872	INTERGENIC
3R	18483582	3R_18483582_SNP [dm3] 3R_22657860_SNP [dm6]	G	A	1.704e^-4	0.872	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18813820	3R_18813820_SNP [dm3] 3R_22988098_SNP [dm6]	C	T	1.705e^-4	0.872	SYNONYMOUS_CODING Or94a INTRON Nha2
3L	18190065	3L_18190065_SNP [dm3] 3L_18196965_SNP [dm6]	T	C	1.711e^-4	0.872	DOWNSTREAM CR45234 INTERGENIC
X	14377234	X_14377234_SNP [dm3] X_14483201_SNP [dm6]	C	T	1.713e^-4	0.872	INTERGENIC
2L	22566847	2L_22566847_SNP [dm3] 2L_22674115_SNP [dm6]	C	T	1.713e^-4	0.872	INTRON CG40006
X	11560355	X_11560355_SNP [dm3] X_11666322_SNP [dm6]	G	T	1.722e^-4	0.872	INTRON Ptp10D
2R	6235829	2R_6235829_SNP [dm3] 2R_10348324_SNP [dm6]	G	T	1.725e^-4	0.872	INTRON CG42732
2L	22567617	2L_22567617_SNP [dm3] 2L_22674885_SNP [dm6]	G	C	1.727e^-4	0.872	INTRON CG40006
3L	8022396	3L_8022396_SNP [dm3] 3L_8029296_SNP [dm6]	C	A	1.731e^-4	0.872	UPSTREAM tRNA:CR32370 INTRON nmo	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	15841761	2L_15841761_SNP [dm3] 2L_15841761_SNP [dm6]	A	T	1.740e^-4	0.872	UPSTREAM CR45694 INTERGENIC
X	20900549	X_20900549_INS [dm3] X_21029522_INS [dm6]	A	ATGATTTGCGTA...	1.742e^-4	0.872	UTR_3_PRIME CG1529 DOWNSTREAM CG1529
3L	18190066	3L_18190066_SNP [dm3] 3L_18196966_SNP [dm6]	G	T	1.749e^-4	0.872	DOWNSTREAM CR45234 INTERGENIC
X	21358024	X_21358024_SNP [dm3] X_21486997_SNP [dm6]	C	G	1.751e^-4	0.872	INTERGENIC	transposable element FlyBase
2L	1472819	2L_1472819_SNP [dm3] 2L_1472819_SNP [dm6]	A	C	1.753e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1495930	2L_1495930_SNP [dm3] 2L_1495930_SNP [dm6]	G	A	1.758e^-4	0.872	NON_SYNONYMOUS_CODING CG31926 DOWNSTREAM CG33128	TF binding site mE1_TFBS_sens
3R	17913561	3R_17913561_SNP [dm3] 3R_22087839_SNP [dm6]	T	A	1.760e^-4	0.872	DOWNSTREAM CG5791 INTRON CG5778
3R	15400754	3R_15400754_SNP [dm3] 3R_19575032_SNP [dm6]	A	C	1.767e^-4	0.872	INTRON Dys
3L	7449825	3L_7449825_SNP [dm3] 3L_7456725_SNP [dm6]	C	T	1.769e^-4	0.872	SYNONYMOUS_CODING ppk26
2R	12466735	2R_12466735_SNP [dm3] 2R_16579230_SNP [dm6]	A	T	1.774e^-4	0.872	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	17273282	2R_17273282_SNP [dm3] 2R_21385777_SNP [dm6]	G	C	1.779e^-4	0.872	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl
3L	3787887	3L_3787887_SNP [dm3] 3L_3787887_SNP [dm6]	T	G	1.782e^-4	0.872	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17098670	2R_17098670_SNP [dm3] 2R_21211165_SNP [dm6]	A	G	1.782e^-4	0.872	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	18813994	3R_18813994_SNP [dm3] 3R_22988272_SNP [dm6]	T	C	1.790e^-4	0.872	SYNONYMOUS_CODING Or94a INTRON Nha2
3L	11702873	3L_11702873_SNP [dm3] 3L_11709773_SNP [dm6]	C	A	1.791e^-4	0.872	NON_SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12751115	3L_12751115_SNP [dm3] 3L_12758015_SNP [dm6]	C	T	1.798e^-4	0.872	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3787935	3L_3787935_SNP [dm3] 3L_3787935_SNP [dm6]	A	G	1.799e^-4	0.872	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	509293	X_509293_SNP [dm3] X_615260_SNP [dm6]	T	C	1.803e^-4	0.872	SYNONYMOUS_CODING CG13366 UTR_5_PRIME CG13366	TF binding site BDTNP1_TFBS_dl
2R	10887402	2R_10887402_SNP [dm3] 2R_14999897_SNP [dm6]	A	G	1.803e^-4	0.872	INTERGENIC
2R	16666136	2R_16666136_SNP [dm3] 2R_20778631_SNP [dm6]	T	C	1.805e^-4	0.872	NON_SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
3L	6528543	3L_6528543_SNP [dm3] 3L_6535443_SNP [dm6]	C	T	1.816e^-4	0.872	INTRON sfl
2L	9615473	2L_9615473_SNP [dm3] 2L_9615473_SNP [dm6]	T	G	1.823e^-4	0.872	UPSTREAM GlcAT-S INTRON Trx-2
3L	1117678	3L_1117678_SNP [dm3] 3L_1117678_SNP [dm6]	A	C	1.827e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17098468	2R_17098468_SNP [dm3] 2R_21210963_SNP [dm6]	T	C	1.828e^-4	0.872	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	20775177	3R_20775177_SNP [dm3] 3R_24949455_SNP [dm6]	G	C	1.830e^-4	0.872	SYNONYMOUS_CODING CG13646
3L	1056664	3L_1056664_SNP [dm3] 3L_1056664_SNP [dm6]	C	G	1.830e^-4	0.872	INTRON bab1
2L	11769612	2L_11769612_SNP [dm3] 2L_11769612_SNP [dm6]	A	G	1.831e^-4	0.872	INTERGENIC
2L	9873867	2L_9873867_SNP [dm3] 2L_9873867_SNP [dm6]	T	G	1.831e^-4	0.872	INTRON nAChRalpha6
2R	18596915	2R_18596915_SNP [dm3] 2R_22709410_SNP [dm6]	C	T	1.839e^-4	0.872	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CR43735
3R	2907084	3R_2907084_SNP [dm3] 3R_7081362_SNP [dm6]	A	G	1.839e^-4	0.872	UPSTREAM Ref1 & 1 other INTERGENIC	transposable element FlyBase
X	10279301	X_10279301_SNP [dm3] X_10385268_SNP [dm6]	A	G	1.842e^-4	0.872	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4831376	2L_4831376_SNP [dm3] 2L_4831376_SNP [dm6]	C	G	1.842e^-4	0.872	UPSTREAM CG2976 INTRON Ir25a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1549266	2L_1549266_SNP [dm3] 2L_1549266_SNP [dm6]	A	G	1.847e^-4	0.872	INTERGENIC
X	19861542	X_19861542_SNP [dm3] X_19967509_SNP [dm6]	G	A	1.852e^-4	0.872	UTR_3_PRIME Nep3
3L	13241424	3L_13241424_SNP [dm3] 3L_13248324_SNP [dm6]	A	C	1.861e^-4	0.872	SYNONYMOUS_CODING CG32119 INTRON caps
3L	14962751	3L_14962751_SNP [dm3] 3L_14969651_SNP [dm6]	C	T	1.863e^-4	0.872	SYNONYMOUS_CODING Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10219429	2L_10219429_SNP [dm3] 2L_10219429_SNP [dm6]	A	G	1.865e^-4	0.872	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	16666488	2R_16666488_SNP [dm3] 2R_20778983_SNP [dm6]	C	T	1.865e^-4	0.872	NON_SYNONYMOUS_CODING CG43711	TF binding site mE1_TFBS_HSA
X	19091980	X_19091980_SNP [dm3] X_19197947_SNP [dm6]	G	A	1.867e^-4	0.872	UTR_3_PRIME CG7990
2R	8153382	2R_8153382_SNP [dm3] 2R_12265877_SNP [dm6]	G	T	1.882e^-4	0.872	INTRON Cam
3R	7107095	3R_7107095_SNP [dm3] 3R_11281373_SNP [dm6]	T	C	1.886e^-4	0.872	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13242483	3L_13242483_SNP [dm3] 3L_13249383_SNP [dm6]	T	C	1.895e^-4	0.872	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
X	3529410	X_3529410_INS [dm3] X_3635377_INS [dm6]	G	GG	1.896e^-4	0.872	INTRON AstA-R1
2R	7392063	2R_7392063_SNP [dm3] 2R_11504558_SNP [dm6]	G	A	1.898e^-4	0.872	INTRON inv
2L	4831494	2L_4831494_SNP [dm3] 2L_4831494_SNP [dm6]	C	A	1.901e^-4	0.872	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26515570	3R_26515570_SNP [dm3] 3R_30689848_SNP [dm6]	C	A	1.909e^-4	0.872	UPSTREAM Spn100A INTERGENIC
2L	10639556	2L_10639556_DEL [dm3] 2L_10639556_DEL [dm6]	AA	A	1.911e^-4	0.872	UPSTREAM CG31872 EXON CR45351
2R	11755482	2R_11755482_SNP [dm3] 2R_15867977_SNP [dm6]	T	C	1.919e^-4	0.872	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
X	18929169	X_18929169_SNP [dm3] X_19035136_SNP [dm6]	T	A	1.921e^-4	0.872	INTERGENIC
2L	2994887	2L_2994887_SNP [dm3] 2L_2994887_SNP [dm6]	C	A	1.926e^-4	0.872	SYNONYMOUS_CODING CG3558
2L	22016483	2L_22016483_SNP [dm3] 2L_22016483_SNP [dm6]	C	A	1.928e^-4	0.872	SYNONYMOUS_CODING CG31693	TF binding site mE1_TFBS_sens
3L	6511281	3L_6511281_DEL [dm3] 3L_6518181_DEL [dm6]	ACA	TG	1.928e^-4	0.872	INTRON sfl	TF binding site mE1_TFBS_cad
X	12730603	X_12730603_SNP [dm3] X_12836570_SNP [dm6]	A	C	1.932e^-4	0.872	INTRON Pde9
2R	6889658	2R_6889658_SNP [dm3] 2R_11002153_SNP [dm6]	T	C	1.937e^-4	0.872	INTRON luna
3L	1286335	3L_1286335_SNP [dm3] 3L_1286335_SNP [dm6]	G	A	1.938e^-4	0.872	INTRON CG32333
2L	3056576	2L_3056576_SNP [dm3] 2L_3056576_SNP [dm6]	A	G	1.938e^-4	0.872	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6527356	3L_6527356_DEL [dm3] 3L_6534256_DEL [dm6]	AA	A	1.940e^-4	0.872	INTRON sfl
3L	12752187	3L_12752187_SNP [dm3] 3L_12759087_SNP [dm6]	A	C	1.950e^-4	0.872	INTRON CG32113
2R	16667934	2R_16667934_SNP [dm3] 2R_20780429_SNP [dm6]	A	G	1.950e^-4	0.872	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3787077	3L_3787077_SNP [dm3] 3L_3787077_SNP [dm6]	C	T	1.950e^-4	0.872	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	7444873	X_7444873_SNP [dm3] X_7550840_SNP [dm6]	A	T	1.951e^-4	0.872	INTERGENIC
2R	5634446	2R_5634446_SNP [dm3] 2R_9746941_SNP [dm6]	A	C	1.951e^-4	0.872	UTR_5_PRIME sqa
2L	15750215	2L_15750215_SNP [dm3] 2L_15750215_SNP [dm6]	A	G	1.952e^-4	0.872	INTRON l_2_35Di
3L	7718267	3L_7718267_SNP [dm3] 3L_7725167_SNP [dm6]	A	G	1.956e^-4	0.872	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8326894	3L_8326894_SNP [dm3] 3L_8333794_SNP [dm6]	G	A	1.959e^-4	0.872	INTERGENIC
X	8620007	X_8620007_SNP [dm3] X_8725974_SNP [dm6]	C	A	1.966e^-4	0.872	DOWNSTREAM CR43297 INTERGENIC	TF binding site mE1_TFBS_sens
2L	22246695	2L_22246695_SNP [dm3] 2L_22246695_SNP [dm6]	G	A	1.971e^-4	0.872	UTR_3_PRIME CG3262 DOWNSTREAM RpL21	TF binding site mE1_TFBS_HSA
X	7489757	X_7489757_SNP [dm3] X_7595724_SNP [dm6]	C	T	1.972e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3R	21430560	3R_21430560_DEL [dm3] 3R_25604838_DEL [dm6]	GGTTATTAGATCCTAACATT...	G	1.976e^-4	0.872	UTR_3_PRIME msi INTRON ymp
2R	16613816	2R_16613816_SNP [dm3] 2R_20726311_SNP [dm6]	A	T	1.993e^-4	0.873	INTRON dpr
2R	11249196	2R_11249196_INS [dm3] 2R_15361691_INS [dm6]	A	ATAAAA	1.995e^-4	0.873	INTRON unc-5
2L	8868774	2L_8868774_INS [dm3] 2L_8868774_INS [dm6]	T	TATAAATATATATA...	1.996e^-4	0.873	DOWNSTREAM CR44414 INTERGENIC
3R	9290150	3R_9290150_SNP [dm3] 3R_13464428_SNP [dm6]	G	C	2.000e^-4	0.873	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
3L	9617485	3L_9617485_SNP [dm3] 3L_9624385_SNP [dm6]	A	T	2.003e^-4	0.873	DOWNSTREAM LanB2 INTRON CG3335
X	7444975	X_7444975_SNP [dm3] X_7550942_SNP [dm6]	T	C	2.005e^-4	0.873	INTERGENIC
2R	11246618	2R_11246618_SNP [dm3] 2R_15359113_SNP [dm6]	A	T	2.015e^-4	0.873	INTRON unc-5
2R	15472706	2R_15472706_SNP [dm3] 2R_19585201_SNP [dm6]	A	T	2.018e^-4	0.873	INTRON sm
3R	22992944	3R_22992944_SNP [dm3] 3R_27167222_SNP [dm6]	C	T	2.027e^-4	0.873	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
2L	12804353	2L_12804353_SNP [dm3] 2L_12804353_SNP [dm6]	T	C	2.028e^-4	0.873	INTERGENIC
2L	3055998	2L_3055998_SNP [dm3] 2L_3055998_SNP [dm6]	A	G	2.029e^-4	0.873	UTR_3_PRIME v_2_k05816 UPSTREAM CG3523 DOWNSTREAM v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9449983	X_9449983_SNP [dm3] X_9555950_SNP [dm6]	A	G	2.046e^-4	0.878	SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	11544911	3R_11544911_SNP [dm3] 3R_15719189_SNP [dm6]	C	T	2.056e^-4	0.878	INTERGENIC
2R	19384507	2R_19384507_SNP [dm3] 2R_23496984_SNP [dm6]	C	T	2.065e^-4	0.878	INTERGENIC
2L	9427439	2L_9427439_SNP [dm3] 2L_9427439_SNP [dm6]	T	G	2.074e^-4	0.878	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
3R	9281317	3R_9281317_SNP [dm3] 3R_13455595_SNP [dm6]	T	G	2.075e^-4	0.878	INTRON CG14372 EXON CR17025
2R	18409439	2R_18409439_SNP [dm3] 2R_22521934_SNP [dm6]	A	G	2.076e^-4	0.878	INTRON px	TF binding site mE1_TFBS_HSA
2R	7082479	2R_7082479_SNP [dm3] 2R_11194974_SNP [dm6]	G	A	2.081e^-4	0.878	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	2.082e^-4	0.878	SYNONYMOUS_CODING Strn-Mlck
2R	19375742	2R_19375742_SNP [dm3] 2R_23488219_SNP [dm6]	A	T	2.085e^-4	0.878	INTRON CG43795
X	9959805	X_9959805_SNP [dm3] X_10065772_SNP [dm6]	G	T	2.107e^-4	0.878	INTRON CG15312
2L	10700035	2L_10700035_SNP [dm3] 2L_10700035_SNP [dm6]	C	T	2.113e^-4	0.878	INTRON Lip1	TF binding site mE1_TFBS_cad
2R	3791019	2R_3791019_SNP [dm3] 2R_7903514_SNP [dm6]	A	G	2.120e^-4	0.878	INTRON CG30377
3L	9935539	3L_9935539_SNP [dm3] 3L_9942439_SNP [dm6]	C	T	2.120e^-4	0.878	INTRON CG34356
3L	9935549	3L_9935549_SNP [dm3] 3L_9942449_SNP [dm6]	T	C	2.120e^-4	0.878	INTRON CG34356
2L	8325978	2L_8325978_SNP [dm3] 2L_8325978_SNP [dm6]	A	G	2.130e^-4	0.878	UPSTREAM CG7781 INTERGENIC
X	13203324	X_13203324_DEL [dm3] X_13309291_DEL [dm6]	CCA	C	2.130e^-4	0.878	INTRON IP3K2
2R	8153872	2R_8153872_SNP [dm3] 2R_12266367_SNP [dm6]	A	C	2.132e^-4	0.878	INTRON Cam
3R	17913335	3R_17913335_SNP [dm3] 3R_22087613_SNP [dm6]	G	A	2.143e^-4	0.878	SYNONYMOUS_CODING CG5791 INTRON CG5778
3R	15838603	3R_15838603_SNP [dm3] 3R_20012881_SNP [dm6]	T	C	2.145e^-4	0.878	UPSTREAM CG4836 INTRON CG17190
3L	12750296	3L_12750296_SNP [dm3] 3L_12757196_SNP [dm6]	C	G	2.149e^-4	0.878	SYNONYMOUS_CODING CG32113
3L	5277029	3L_5277029_SNP [dm3] 3L_5283929_SNP [dm6]	G	C	2.153e^-4	0.878	INTERGENIC
3L	11201860	3L_11201860_SNP [dm3] 3L_11208760_SNP [dm6]	G	A	2.156e^-4	0.878	SYNONYMOUS_CODING Ube3a	TF binding site mE1_TFBS_cad
2L	844267	2L_844267_SNP [dm3] 2L_844267_SNP [dm6]	G	C	2.164e^-4	0.878	INTRON drongo
X	20357107	X_20357107_SNP [dm3] X_20486080_SNP [dm6]	G	A	2.170e^-4	0.878	UPSTREAM CG15461 INTRON RhoGAP19D
3R	17913553	3R_17913553_INS [dm3] 3R_22087831_INS [dm6]	G	AA	2.180e^-4	0.878	DOWNSTREAM CG5791 INTRON CG5778
3R	17913555	3R_17913555_MNP [dm3] 3R_22087833_MNP [dm6]	GTTTT	AAAAC	2.180e^-4	0.878	DOWNSTREAM CG5791 INTRON CG5778
3R	17913562	3R_17913562_DEL [dm3] 3R_22087840_DEL [dm6]	ATTC	A	2.180e^-4	0.878	DOWNSTREAM CG5791 INTRON CG5778
3R	17913567	3R_17913567_SNP [dm3] 3R_22087845_SNP [dm6]	G	A	2.180e^-4	0.878	DOWNSTREAM CG5791 INTRON CG5778
3R	17913568	3R_17913568_SNP [dm3] 3R_22087846_SNP [dm6]	T	A	2.180e^-4	0.878	DOWNSTREAM CG5791 INTRON CG5778
3L	12758187	3L_12758187_SNP [dm3] 3L_12765087_SNP [dm6]	C	T	2.183e^-4	0.878	INTRON CG32113	TF binding site mE1_TFBS_cad
2L	18678514	2L_18678514_SNP [dm3] 2L_18678514_SNP [dm6]	G	A	2.189e^-4	0.878	UPSTREAM CG31751 INTRON CG31751
3L	12708938	3L_12708938_SNP [dm3] 3L_12715838_SNP [dm6]	T	A	2.196e^-4	0.878	INTERGENIC
3L	18165584	3L_18165584_SNP [dm3] 3L_18172484_SNP [dm6]	A	G	2.198e^-4	0.878	INTRON W
3L	12761333	3L_12761333_SNP [dm3] 3L_12768233_SNP [dm6]	A	T	2.202e^-4	0.878	NON_SYNONYMOUS_CODING CG32113 DOWNSTREAM Hip1
3L	15300752	3L_15300752_SNP [dm3] 3L_15307652_SNP [dm6]	C	T	2.212e^-4	0.88	INTRON CG7255
2R	18922500	2R_18922500_SNP [dm3] 2R_23034977_SNP [dm6]	T	C	2.215e^-4	0.88	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14608659	2R_14608659_SNP [dm3] 2R_18721154_SNP [dm6]	G	A	2.221e^-4	0.881	DOWNSTREAM mir-4982 INTRON Hs3st-A
X	19554582	X_19554582_SNP [dm3] X_19660549_SNP [dm6]	T	C	2.254e^-4	0.881	SYNONYMOUS_CODING CG14223	TF binding site mE1_TFBS_chinmo
X	557374	X_557374_SNP [dm3] X_663341_SNP [dm6]	G	C	2.259e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16345323	2R_16345323_SNP [dm3] 2R_20457818_SNP [dm6]	C	A	2.260e^-4	0.881	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	18320699	2R_18320699_SNP [dm3] 2R_22433194_SNP [dm6]	A	T	2.263e^-4	0.881	INTERGENIC
3L	12756325	3L_12756325_SNP [dm3] 3L_12763225_SNP [dm6]	A	G	2.268e^-4	0.881	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15839086	3R_15839086_SNP [dm3] 3R_20013364_SNP [dm6]	T	A	2.272e^-4	0.881	UPSTREAM CG4836 INTRON CG17190
3L	3786997	3L_3786997_SNP [dm3] 3L_3786997_SNP [dm6]	C	A	2.273e^-4	0.881	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11211407	2L_11211407_SNP [dm3] 2L_11211407_SNP [dm6]	A	G	2.276e^-4	0.881	UPSTREAM ab INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	8131292	2R_8131292_SNP [dm3] 2R_12243787_SNP [dm6]	G	C	2.281e^-4	0.881	DOWNSTREAM CG43244 & 1 other INTERGENIC
X	13189644	X_13189644_SNP [dm3] X_13295611_SNP [dm6]	G	A	2.283e^-4	0.881	SYNONYMOUS_CODING CG1764
2R	5562319	2R_5562319_SNP [dm3] 2R_9674814_SNP [dm6]	A	T	2.296e^-4	0.881	INTRON Mmp2	TF binding site mE1_TFBS_inv
2L	9618143	2L_9618143_SNP [dm3] 2L_9618143_SNP [dm6]	T	C	2.298e^-4	0.881	INTRON GlcAT-S
3L	6619197	3L_6619197_SNP [dm3] 3L_6626097_SNP [dm6]	A	G	2.303e^-4	0.881	INTRON GluRIA
X	17365751	X_17365751_SNP [dm3] X_17471718_SNP [dm6]	T	A	2.305e^-4	0.881	INTRON CG43658
3L	2548640	3L_2548640_SNP [dm3] 3L_2548640_SNP [dm6]	A	C	2.308e^-4	0.881	INTRON Spn
2L	8895661	2L_8895661_DEL [dm3] 2L_8895661_DEL [dm6]	CTGTTTAGAGTGTTAGC...	C	2.317e^-4	0.881	INTERGENIC
3L	2548595	3L_2548595_DEL [dm3] 3L_2548595_DEL [dm6]	CCA	C	2.317e^-4	0.881	INTRON Spn
3L	2548609	3L_2548609_SNP [dm3] 3L_2548609_SNP [dm6]	G	A	2.317e^-4	0.881	INTRON Spn
3L	2548620	3L_2548620_SNP [dm3] 3L_2548620_SNP [dm6]	G	A	2.317e^-4	0.881	INTRON Spn
2L	4121639	2L_4121639_DEL [dm3] 2L_4121639_DEL [dm6]	CTTGTAA	C	2.327e^-4	0.881	UPSTREAM Sr-CI DOWNSTREAM Sr-CIII INTERGENIC
3R	21386953	3R_21386953_SNP [dm3] 3R_25561231_SNP [dm6]	C	G	2.328e^-4	0.881	INTRON msi
3L	3787110	3L_3787110_SNP [dm3] 3L_3787110_SNP [dm6]	T	G	2.330e^-4	0.881	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
X	19554525	X_19554525_SNP [dm3] X_19660492_SNP [dm6]	T	C	2.331e^-4	0.881	SYNONYMOUS_CODING CG14223	TF binding site mE1_TFBS_chinmo
3R	16637261	3R_16637261_SNP [dm3] 3R_20811539_SNP [dm6]	T	G	2.335e^-4	0.881	DOWNSTREAM Syp INTRON Fancd2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12753813	3L_12753813_SNP [dm3] 3L_12760713_SNP [dm6]	T	C	2.373e^-4	0.887	SYNONYMOUS_CODING CG32113
2R	8140562	2R_8140562_DEL [dm3] 2R_12253057_DEL [dm6]	AA	A	2.375e^-4	0.887	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5699771	3L_5699771_SNP [dm3] 3L_5706671_SNP [dm6]	C	G	2.381e^-4	0.887	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8149282	2R_8149282_DEL [dm3] 2R_12261777_DEL [dm6]	CTTTTCGCGCAAGAATTTT...	C	2.381e^-4	0.887	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4940452	2R_4940452_SNP [dm3] 2R_9052947_SNP [dm6]	C	A	2.382e^-4	0.887	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	6247228	3R_6247228_SNP [dm3] 3R_10421506_SNP [dm6]	T	C	2.384e^-4	0.887	INTERGENIC
2L	15865259	2L_15865259_SNP [dm3] 2L_15865259_SNP [dm6]	T	G	2.402e^-4	0.887	INTRON CG42792
3L	11280778	3L_11280778_SNP [dm3] 3L_11287678_SNP [dm6]	C	T	2.403e^-4	0.887	DOWNSTREAM CG6175 INTERGENIC
X	3083255	X_3083255_SNP [dm3] X_3189222_SNP [dm6]	T	A	2.412e^-4	0.887	INTRON dnc	TF binding site BDTNP1_TFBS_z
3R	18814288	3R_18814288_SNP [dm3] 3R_22988566_SNP [dm6]	T	A	2.414e^-4	0.887	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
X	17365522	X_17365522_SNP [dm3] X_17471489_SNP [dm6]	C	T	2.428e^-4	0.887	INTRON CG43658
2L	15941399	2L_15941399_SNP [dm3] 2L_15941399_SNP [dm6]	C	T	2.434e^-4	0.887	UPSTREAM CG12448 INTRON beat-Ib
X	11951029	X_11951029_SNP [dm3] X_12056996_SNP [dm6]	A	G	2.457e^-4	0.887	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
2R	18596872	2R_18596872_SNP [dm3] 2R_22709367_SNP [dm6]	G	T	2.471e^-4	0.887	UPSTREAM CR43735 INTRON CG30275
2R	16665468	2R_16665468_SNP [dm3] 2R_20777963_SNP [dm6]	G	A	2.479e^-4	0.887	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	5887459	3R_5887459_SNP [dm3] 3R_10061737_SNP [dm6]	T	A	2.484e^-4	0.887	UPSTREAM CG33630 DOWNSTREAM Npc2c EXON CR45205 & 1 other
2L	3046464	2L_3046464_SNP [dm3] 2L_3046464_SNP [dm6]	T	G	2.489e^-4	0.887	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad
3L	5884330	3L_5884330_SNP [dm3] 3L_5891230_SNP [dm6]	C	T	2.492e^-4	0.887	INTERGENIC
3R	27585138	3R_27585138_SNP [dm3] 3R_31759416_SNP [dm6]	C	T	2.503e^-4	0.887	UTR_3_PRIME Smvt UPSTREAM CG2187 DOWNSTREAM CR44263
2L	959392	2L_959392_SNP [dm3] 2L_959392_SNP [dm6]	T	A	2.505e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22230436	3R_22230436_SNP [dm3] 3R_26404714_SNP [dm6]	C	T	2.521e^-4	0.887	INTERGENIC
3L	1880120	3L_1880120_SNP [dm3] 3L_1880120_SNP [dm6]	A	G	2.522e^-4	0.887	INTRON CG13937
2L	6864542	2L_6864542_SNP [dm3] 2L_6864542_SNP [dm6]	A	T	2.525e^-4	0.887	UTR_5_PRIME Nha1 INTRON Nha1
2R	16667893	2R_16667893_SNP [dm3] 2R_20780388_SNP [dm6]	A	G	2.527e^-4	0.887	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9226084	X_9226084_SNP [dm3] X_9332051_SNP [dm6]	A	G	2.546e^-4	0.887	INTRON CG34449
3R	26515561	3R_26515561_SNP [dm3] 3R_30689839_SNP [dm6]	C	A	2.559e^-4	0.887	UPSTREAM Spn100A INTERGENIC
3L	6364810	3L_6364810_SNP [dm3] 3L_6371710_SNP [dm6]	A	G	2.587e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3352227	X_3352227_SNP [dm3] X_3458194_SNP [dm6]	C	A	2.600e^-4	0.887	DOWNSTREAM CG16782 INTRON CR44999
3L	12755110	3L_12755110_SNP [dm3] 3L_12762010_SNP [dm6]	C	G	2.610e^-4	0.887	SYNONYMOUS_CODING CG32113
2L	6837631	2L_6837631_SNP [dm3] 2L_6837631_SNP [dm6]	A	G	2.613e^-4	0.887	INTRON sens-2
3L	6522434	3L_6522434_SNP [dm3] 3L_6529334_SNP [dm6]	C	G	2.616e^-4	0.887	INTRON sfl
3L	894814	3L_894814_SNP [dm3] 3L_894814_SNP [dm6]	T	G	2.620e^-4	0.887	UTR_3_PRIME CG32479
3R	22992934	3R_22992934_DEL [dm3] 3R_27167212_DEL [dm6]	GCA	G	2.620e^-4	0.887	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
2L	3279483	2L_3279483_SNP [dm3] 2L_3279483_SNP [dm6]	A	G	2.630e^-4	0.887	UPSTREAM CG3332 INTRON CG3332
3L	5860174	3L_5860174_SNP [dm3] 3L_5867074_SNP [dm6]	C	A	2.630e^-4	0.887	INTERGENIC
2R	7180243	2R_7180243_SNP [dm3] 2R_11292738_SNP [dm6]	A	T	2.631e^-4	0.887	SYNONYMOUS_CODING CG30033 INTRON dare	TF binding site mE1_TFBS_sens
3R	20352791	3R_20352791_SNP [dm3] 3R_24527069_SNP [dm6]	A	C	2.631e^-4	0.887	SYNONYMOUS_CODING CG13618 UPSTREAM CG6607
2R	17884757	2R_17884757_SNP [dm3] 2R_21997252_SNP [dm6]	A	G	2.641e^-4	0.887	INTRON CG34370
2L	10181713	2L_10181713_SNP [dm3] 2L_10181713_SNP [dm6]	T	G	2.642e^-4	0.887	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	1432732	3L_1432732_SNP [dm3] 3L_1432732_SNP [dm6]	A	G	2.644e^-4	0.887	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19132967	2R_19132967_SNP [dm3] 2R_23245444_SNP [dm6]	T	C	2.644e^-4	0.887	UPSTREAM yip3 INTERGENIC
2R	16613723	2R_16613723_INS [dm3] 2R_20726218_INS [dm6]	A	ATTGTA	2.650e^-4	0.887	SPLICE_SITE_REGION dpr INTRON dpr
3R	18814267	3R_18814267_SNP [dm3] 3R_22988545_SNP [dm6]	T	C	2.657e^-4	0.887	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
2L	3046451	2L_3046451_SNP [dm3] 2L_3046451_SNP [dm6]	A	T	2.660e^-4	0.887	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad
3R	22230411	3R_22230411_SNP [dm3] 3R_26404689_SNP [dm6]	G	C	2.662e^-4	0.887	INTERGENIC
X	11912608	X_11912608_SNP [dm3] X_12018575_SNP [dm6]	T	C	2.667e^-4	0.887	UPSTREAM CG15735 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	22566878	2L_22566878_SNP [dm3] 2L_22674146_SNP [dm6]	C	T	2.672e^-4	0.887	INTRON CG40006
3L	14156044	3L_14156044_SNP [dm3] 3L_14162944_SNP [dm6]	A	T	2.682e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14156045	3L_14156045_SNP [dm3] 3L_14162945_SNP [dm6]	G	A	2.682e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15031954	2L_15031954_SNP [dm3] 2L_15031954_SNP [dm6]	A	G	2.685e^-4	0.887	UPSTREAM CG31832 INTRON GABA-B-R1
3L	5281469	3L_5281469_SNP [dm3] 3L_5288369_SNP [dm6]	G	A	2.698e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19029609	3R_19029609_SNP [dm3] 3R_23203887_SNP [dm6]	T	C	2.701e^-4	0.887	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10332070	2R_10332070_SNP [dm3] 2R_14444565_SNP [dm6]	C	A	2.707e^-4	0.887	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7718372	3L_7718372_SNP [dm3] 3L_7725272_SNP [dm6]	A	C	2.710e^-4	0.887	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6850619	3R_6850619_SNP [dm3] 3R_11024897_SNP [dm6]	A	G	2.713e^-4	0.887	INTRON CG34114
2L	3418285	2L_3418285_SNP [dm3] 2L_3418285_SNP [dm6]	G	T	2.714e^-4	0.887	DOWNSTREAM CG31952 INTRON pgant2
3L	18190095	3L_18190095_SNP [dm3] 3L_18196995_SNP [dm6]	A	G	2.716e^-4	0.887	DOWNSTREAM CR45234 INTERGENIC
X	13189696	X_13189696_SNP [dm3] X_13295663_SNP [dm6]	G	T	2.723e^-4	0.887	INTRON CG1764
3L	9935845	3L_9935845_SNP [dm3] 3L_9942745_SNP [dm6]	G	C	2.724e^-4	0.887	INTRON CG34356
3L	4054572	3L_4054572_SNP [dm3] 3L_4054572_SNP [dm6]	T	C	2.725e^-4	0.887	INTRON CG1136
3L	5860177	3L_5860177_SNP [dm3] 3L_5867077_SNP [dm6]	T	A	2.733e^-4	0.887	INTERGENIC
2L	22242766	2L_22242766_DEL [dm3] 2L_22242766_DEL [dm6]	GAAGAGATACTGGG...	G	2.738e^-4	0.887	UTR_3_PRIME CG3262	TF binding site mE1_TFBS_inv
3R	12439026	3R_12439026_INS [dm3] 3R_16613304_INS [dm6]	T	TC	2.739e^-4	0.887	DOWNSTREAM CG10340 INTRON CG12783
2R	7046027	2R_7046027_SNP [dm3] 2R_11158522_SNP [dm6]	G	A	2.740e^-4	0.887	UPSTREAM shn INTRON CG13229
X	15863056	X_15863056_SNP [dm3] X_15969023_SNP [dm6]	A	T	2.744e^-4	0.887	INTRON mmd
X	9905199	X_9905199_SNP [dm3] X_10011166_SNP [dm6]	C	A	2.748e^-4	0.887	SPLICE_SITE_REGION CG2990 INTRON CG2990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9905224	X_9905224_SNP [dm3] X_10011191_SNP [dm6]	G	A	2.748e^-4	0.887	SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1501244	2L_1501244_SNP [dm3] 2L_1501244_SNP [dm6]	G	T	2.750e^-4	0.887	NON_SYNONYMOUS_CODING CG7420 UPSTREAM CG18131 EXON CR44064
2R	19657807	2R_19657807_SNP [dm3] 2R_23770284_SNP [dm6]	G	A	2.762e^-4	0.887	INTRON CG9850	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18352979	3L_18352979_INS [dm3] 3L_18359879_INS [dm6]	T	TT	2.762e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9563600	3L_9563600_SNP [dm3] 3L_9570500_SNP [dm6]	A	C	2.784e^-4	0.887	INTRON CG42673
2R	10160469	2R_10160469_SNP [dm3] 2R_14272964_SNP [dm6]	C	T	2.789e^-4	0.887	SYNONYMOUS_CODING conv
X	21075999	X_21075999_DEL [dm3] X_21204972_DEL [dm6]	AA	A	2.805e^-4	0.887	DOWNSTREAM CG32521 INTERGENIC
X	8278372	X_8278372_SNP [dm3] X_8384339_SNP [dm6]	T	G	2.811e^-4	0.887	INTERGENIC
3L	904188	3L_904188_SNP [dm3] 3L_904188_SNP [dm6]	T	C	2.815e^-4	0.887	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	8334594	3L_8334594_SNP [dm3] 3L_8341494_SNP [dm6]	C	T	2.817e^-4	0.887	SYNONYMOUS_CODING CG7083 INTRON DNApol-alpha50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7718114	3L_7718114_SNP [dm3] 3L_7725014_SNP [dm6]	A	G	2.820e^-4	0.887	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2873604	2L_2873604_SNP [dm3] 2L_2873604_SNP [dm6]	C	G	2.821e^-4	0.887	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10332556	2L_10332556_SNP [dm3] 2L_10332556_SNP [dm6]	T	C	2.822e^-4	0.887	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16348983	3R_16348983_INS [dm3] 3R_20523261_INS [dm6]	C	CTAAAAAATAGG...	2.823e^-4	0.887	INTERGENIC
2R	15386676	2R_15386676_SNP [dm3] 2R_19499171_SNP [dm6]	G	T	2.827e^-4	0.887	INTRON CG15120
2L	22009295	2L_22009295_SNP [dm3] 2L_22009295_SNP [dm6]	G	T	2.839e^-4	0.887	INTERGENIC
X	18928990	X_18928990_SNP [dm3] X_19034957_SNP [dm6]	T	C	2.844e^-4	0.887	INTERGENIC
2L	20293863	2L_20293863_SNP [dm3] 2L_20293863_SNP [dm6]	T	A	2.848e^-4	0.887	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21727068	3R_21727068_SNP [dm3] 3R_25901346_SNP [dm6]	T	C	2.851e^-4	0.887	NON_SYNONYMOUS_CODING CG31091
2R	89612	2R_89612_SNP [dm3] 2R_4202107_SNP [dm6]	G	T	2.851e^-4	0.887	INTERGENIC
3L	3495573	3L_3495573_SNP [dm3] 3L_3495573_SNP [dm6]	C	G	2.864e^-4	0.887	INTRON CG42324
3R	22287383	3R_22287383_SNP [dm3] 3R_26461661_SNP [dm6]	G	T	2.867e^-4	0.887	DOWNSTREAM CG14238 INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9450644	2R_9450644_SNP [dm3] 2R_13563139_SNP [dm6]	C	G	2.870e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4050276	2L_4050276_SNP [dm3] 2L_4050276_SNP [dm6]	A	T	2.870e^-4	0.887	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27596770	3R_27596770_SNP [dm3] 3R_31771048_SNP [dm6]	C	T	2.872e^-4	0.887	SYNONYMOUS_CODING CG2135	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12750431	3L_12750431_SNP [dm3] 3L_12757331_SNP [dm6]	T	C	2.876e^-4	0.887	SYNONYMOUS_CODING CG32113
3L	12752091	3L_12752091_SNP [dm3] 3L_12758991_SNP [dm6]	T	C	2.881e^-4	0.887	NON_SYNONYMOUS_CODING CG32113
3L	853449	3L_853449_SNP [dm3] 3L_853449_SNP [dm6]	A	G	2.886e^-4	0.887	DOWNSTREAM CG13890 INTRON dpr20
X	9959807	X_9959807_SNP [dm3] X_10065774_SNP [dm6]	T	C	2.889e^-4	0.887	INTRON CG15312
3R	22286730	3R_22286730_SNP [dm3] 3R_26461008_SNP [dm6]	C	T	2.893e^-4	0.887	UPSTREAM CG5455 DOWNSTREAM CG14238 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14760215	X_14760215_SNP [dm3] X_14866182_SNP [dm6]	T	C	2.896e^-4	0.887	START_GAINED CG9518 UTR_5_PRIME CG9518 INTRON Flo2
2R	10888163	2R_10888163_SNP [dm3] 2R_15000658_SNP [dm6]	G	A	2.900e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13189537	X_13189537_SNP [dm3] X_13295504_SNP [dm6]	C	T	2.900e^-4	0.887	INTRON CG1764
3L	9701065	3L_9701065_SNP [dm3] 3L_9707965_SNP [dm6]	G	A	2.917e^-4	0.887	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13522843	3R_13522843_SNP [dm3] 3R_17697121_SNP [dm6]	G	T	2.920e^-4	0.887	INTRON osa	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1218539	2L_1218539_SNP [dm3] 2L_1218539_SNP [dm6]	C	G	2.922e^-4	0.887	UPSTREAM CR43263 & 1 other INTERGENIC
3L	12753753	3L_12753753_SNP [dm3] 3L_12760653_SNP [dm6]	A	G	2.922e^-4	0.887	SYNONYMOUS_CODING CG32113
X	10065165	X_10065165_SNP [dm3] X_10171132_SNP [dm6]	G	T	2.924e^-4	0.887	INTRON CG43902 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	14922846	3R_14922846_SNP [dm3] 3R_19097124_SNP [dm6]	T	C	2.936e^-4	0.887	UTR_5_PRIME CG6040 DOWNSTREAM ATPsyn-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4343529	3L_4343529_SNP [dm3] 3L_4343529_SNP [dm6]	A	G	2.940e^-4	0.887	INTRON Cip4
X	9450034	X_9450034_SNP [dm3] X_9556001_SNP [dm6]	T	C	2.945e^-4	0.887	SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	10887547	2R_10887547_SNP [dm3] 2R_15000042_SNP [dm6]	T	C	2.957e^-4	0.887	INTERGENIC
3L	12724449	3L_12724449_DEL [dm3] 3L_12731349_DEL [dm6]	GAATTTGAAAATCTT...	A	2.961e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	76539	2R_76539_SNP [dm3] 2R_4189034_SNP [dm6]	T	G	2.970e^-4	0.887	UPSTREAM CG40127 INTERGENIC
2R	17273270	2R_17273270_SNP [dm3] 2R_21385765_SNP [dm6]	T	C	2.972e^-4	0.887	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl
2R	18156797	2R_18156797_SNP [dm3] 2R_22269292_SNP [dm6]	C	G	2.979e^-4	0.887	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	573103	X_573103_SNP [dm3] X_679070_SNP [dm6]	C	G	2.986e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1271727	2L_1271727_INS [dm3] 2L_1271727_INS [dm6]	T	TCAAAAGTT	2.988e^-4	0.887	INTRON robo3
3R	13706744	3R_13706744_SNP [dm3] 3R_17881022_SNP [dm6]	C	T	2.993e^-4	0.887	INTRON Rim	TF binding site mE1_TFBS_chinmo
3R	11596755	3R_11596755_SNP [dm3] 3R_15771033_SNP [dm6]	A	C	3.003e^-4	0.887	INTERGENIC
2R	18923713	2R_18923713_SNP [dm3] 2R_23036190_SNP [dm6]	G	A	3.008e^-4	0.887	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
2R	16228904	2R_16228904_SNP [dm3] 2R_20341399_SNP [dm6]	G	C	3.008e^-4	0.887	UPSTREAM CG16739 INTERGENIC
X	7428585	X_7428585_DEL [dm3] X_7534552_DEL [dm6]	ACTCCA	A	3.008e^-4	0.887	INTRON CG32719
3L	5678506	3L_5678506_SNP [dm3] 3L_5685406_SNP [dm6]	G	A	3.013e^-4	0.887	INTRON sif
3R	17560453	3R_17560453_SNP [dm3] 3R_21734731_SNP [dm6]	G	T	3.016e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22229665	3R_22229665_SNP [dm3] 3R_26403943_SNP [dm6]	C	T	3.017e^-4	0.887	UPSTREAM ppk15 INTERGENIC
2R	8981010	2R_8981010_SNP [dm3] 2R_13093505_SNP [dm6]	A	G	3.017e^-4	0.887	INTERGENIC
2L	22311636	2L_22311636_SNP [dm3] 2L_22311636_SNP [dm6]	G	A	3.022e^-4	0.887	UPSTREAM CG17018 INTRON CG17018	transposable element FlyBase
3L	14458378	3L_14458378_SNP [dm3] 3L_14465278_SNP [dm6]	G	A	3.024e^-4	0.887	INTRON bbg
X	564281	X_564281_DEL [dm3] X_670248_DEL [dm6]	TGCGCCCAGTTTT...	T	3.025e^-4	0.887	INTERGENIC
3L	10692108	3L_10692108_SNP [dm3] 3L_10699008_SNP [dm6]	T	C	3.027e^-4	0.887	INTERGENIC
2R	15472532	2R_15472532_SNP [dm3] 2R_19585027_SNP [dm6]	T	A	3.027e^-4	0.887	INTRON sm
X	629896	X_629896_SNP [dm3] X_735863_SNP [dm6]	C	A	3.030e^-4	0.887	INTRON sdk
2L	15060810	2L_15060810_SNP [dm3] 2L_15060810_SNP [dm6]	G	C	3.040e^-4	0.887	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3268170	2R_3268170_SNP [dm3] 2R_7380665_SNP [dm6]	T	A	3.048e^-4	0.887	INTRON Dscam1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13444901	3L_13444901_SNP [dm3] 3L_13451801_SNP [dm6]	C	T	3.052e^-4	0.887	INTRON CG10738	TF binding site mE1_TFBS_disco
2R	16666915	2R_16666915_SNP [dm3] 2R_20779410_SNP [dm6]	C	T	3.053e^-4	0.887	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2R	18155487	2R_18155487_INS [dm3] 2R_22267982_INS [dm6]	T	TCT	3.054e^-4	0.887	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9913290	2L_9913290_SNP [dm3] 2L_9913290_SNP [dm6]	A	G	3.055e^-4	0.887	SYNONYMOUS_CODING Srp54 UPSTREAM Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2993612	2L_2993612_SNP [dm3] 2L_2993612_SNP [dm6]	A	T	3.058e^-4	0.887	UTR_5_PRIME CG3558 UPSTREAM okr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4432807	2R_4432807_SNP [dm3] 2R_8545302_SNP [dm6]	G	T	3.059e^-4	0.887	INTERGENIC
2R	12475362	2R_12475362_SNP [dm3] 2R_16587857_SNP [dm6]	A	G	3.065e^-4	0.887	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9615865	2L_9615865_SNP [dm3] 2L_9615865_SNP [dm6]	T	C	3.075e^-4	0.887	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S
3L	18956853	3L_18956853_SNP [dm3] 3L_18963753_SNP [dm6]	G	T	3.080e^-4	0.887	INTERGENIC
X	12365211	X_12365211_SNP [dm3] X_12471178_SNP [dm6]	C	T	3.085e^-4	0.887	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22230461	3R_22230461_SNP [dm3] 3R_26404739_SNP [dm6]	C	T	3.103e^-4	0.887	INTERGENIC
2L	6049780	2L_6049780_INS [dm3] 2L_6049780_INS [dm6]	C	CAAAA	3.106e^-4	0.887	INTRON CG12393	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22775761	3R_22775761_SNP [dm3] 3R_26950039_SNP [dm6]	T	C	3.110e^-4	0.887	UTR_3_PRIME CG6330 DOWNSTREAM CG6330 & 1 other
X	3083164	X_3083164_SNP [dm3] X_3189131_SNP [dm6]	C	T	3.111e^-4	0.887	INTRON dnc	TF binding site BDTNP1_TFBS_z
X	12365202	X_12365202_SNP [dm3] X_12471169_SNP [dm6]	G	T	3.112e^-4	0.887	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15839260	3R_15839260_SNP [dm3] 3R_20013538_SNP [dm6]	T	G	3.113e^-4	0.887	UPSTREAM CG4836 & 1 other INTERGENIC
2L	15860281	2L_15860281_SNP [dm3] 2L_15860281_SNP [dm6]	A	T	3.118e^-4	0.887	INTERGENIC
3L	4503830	3L_4503830_SNP [dm3] 3L_4503830_SNP [dm6]	A	C	3.122e^-4	0.887	DOWNSTREAM NT1 INTRON NT1
2R	14511355	2R_14511355_SNP [dm3] 2R_18623850_SNP [dm6]	A	G	3.126e^-4	0.887	DOWNSTREAM CG5335 INTRON Atg7
2R	18252727	2R_18252727_SNP [dm3] 2R_22365222_SNP [dm6]	G	T	3.135e^-4	0.887	INTRON Liprin-gamma
X	12168289	X_12168289_SNP [dm3] X_12274256_SNP [dm6]	T	A	3.136e^-4	0.887	UPSTREAM CG45603 INTRON Ten-a
X	7422255	X_7422255_SNP [dm3] X_7528222_SNP [dm6]	C	T	3.137e^-4	0.887	UPSTREAM CG43138 INTRON CG32719
X	15427413	X_15427413_SNP [dm3] X_15533380_SNP [dm6]	A	G	3.139e^-4	0.887	INTRON Ac13E
X	17365750	X_17365750_SNP [dm3] X_17471717_SNP [dm6]	T	A	3.139e^-4	0.887	INTRON CG43658
2R	8132584	2R_8132584_DEL [dm3] 2R_12245079_DEL [dm6]	CTTTGCCATACATTC...	C	3.142e^-4	0.887	UPSTREAM CG43244 INTERGENIC
2R	11755479	2R_11755479_SNP [dm3] 2R_15867974_SNP [dm6]	A	T	3.142e^-4	0.887	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	4009460	2L_4009460_SNP [dm3] 2L_4009460_SNP [dm6]	G	T	3.149e^-4	0.887	DOWNSTREAM CG43774 INTERGENIC
2L	4009514	2L_4009514_SNP [dm3] 2L_4009514_SNP [dm6]	C	G	3.149e^-4	0.887	DOWNSTREAM CG43774 INTERGENIC
3R	10574234	3R_10574234_SNP [dm3] 3R_14748512_SNP [dm6]	T	C	3.155e^-4	0.887	UPSTREAM jvl INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6279267	3R_6279267_SNP [dm3] 3R_10453545_SNP [dm6]	C	A	3.158e^-4	0.887	INTERGENIC
3R	16337091	3R_16337091_SNP [dm3] 3R_20511369_SNP [dm6]	A	G	3.160e^-4	0.887	INTRON CG4288
2L	2073982	2L_2073982_SNP [dm3] 2L_2073982_SNP [dm6]	G	A	3.162e^-4	0.887	INTRON dpr3
3L	1258943	3L_1258943_SNP [dm3] 3L_1258943_SNP [dm6]	C	T	3.165e^-4	0.887	INTRON CG9134
3L	12750601	3L_12750601_SNP [dm3] 3L_12757501_SNP [dm6]	T	A	3.166e^-4	0.887	INTRON CG32113
3L	12751782	3L_12751782_SNP [dm3] 3L_12758682_SNP [dm6]	C	A	3.177e^-4	0.887	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
3R	22265908	3R_22265908_SNP [dm3] 3R_26440186_SNP [dm6]	A	T	3.181e^-4	0.887	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15855127	2L_15855127_SNP [dm3] 2L_15855127_SNP [dm6]	C	A	3.188e^-4	0.887	INTRON Tektin-A
2L	15388548	2L_15388548_SNP [dm3] 2L_15388548_SNP [dm6]	C	A	3.198e^-4	0.887	INTERGENIC
3R	25648000	3R_25648000_SNP [dm3] 3R_29822278_SNP [dm6]	T	G	3.218e^-4	0.887	INTRON neo
2L	22023762	2L_22023762_SNP [dm3] 2L_22023762_SNP [dm6]	G	A	3.226e^-4	0.887	NON_SYNONYMOUS_CODING tio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1281373	3L_1281373_SNP [dm3] 3L_1281373_SNP [dm6]	T	G	3.227e^-4	0.887	INTRON CG32333
3L	12726239	3L_12726239_SNP [dm3] 3L_12733139_SNP [dm6]	A	G	3.229e^-4	0.887	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	2196266	3L_2196266_SNP [dm3] 3L_2196266_SNP [dm6]	C	T	3.229e^-4	0.887	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16348882	3R_16348882_SNP [dm3] 3R_20523160_SNP [dm6]	G	A	3.237e^-4	0.887	INTERGENIC
3R	17167398	3R_17167398_SNP [dm3] 3R_21341676_SNP [dm6]	G	C	3.243e^-4	0.887	INTRON CG16791	TF binding site BDTNP1_TFBS_da
3L	12752451	3L_12752451_SNP [dm3] 3L_12759351_SNP [dm6]	G	A	3.245e^-4	0.887	SYNONYMOUS_CODING CG32113
2R	17098497	2R_17098497_SNP [dm3] 2R_21210992_SNP [dm6]	A	G	3.246e^-4	0.887	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	4069879	3R_4069879_SNP [dm3] 3R_8244157_SNP [dm6]	C	A	3.248e^-4	0.887	UTR_5_PRIME CG33722 UPSTREAM CG9636 INTRON CG33722 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	7449822	3L_7449822_SNP [dm3] 3L_7456722_SNP [dm6]	A	G	3.255e^-4	0.887	SYNONYMOUS_CODING ppk26
3L	7854651	3L_7854651_SNP [dm3] 3L_7861551_SNP [dm6]	A	G	3.258e^-4	0.887	INTRON Pdp1
3R	14569355	3R_14569355_SNP [dm3] 3R_18743633_SNP [dm6]	G	C	3.259e^-4	0.887	UPSTREAM Mekk1 DOWNSTREAM CG7718 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16857917	2R_16857917_SNP [dm3] 2R_20970412_SNP [dm6]	C	T	3.263e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10176409	2R_10176409_SNP [dm3] 2R_14288904_SNP [dm6]	T	G	3.274e^-4	0.887	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11074747	2R_11074747_SNP [dm3] 2R_15187242_SNP [dm6]	C	G	3.278e^-4	0.887	INTRON igl
3L	6519476	3L_6519476_SNP [dm3] 3L_6526376_SNP [dm6]	T	A	3.283e^-4	0.887	INTRON sfl
2R	8140944	2R_8140944_SNP [dm3] 2R_12253439_SNP [dm6]	C	T	3.287e^-4	0.887	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7449801	3L_7449801_SNP [dm3] 3L_7456701_SNP [dm6]	A	G	3.291e^-4	0.887	SYNONYMOUS_CODING ppk26
2L	9874000	2L_9874000_SNP [dm3] 2L_9874000_SNP [dm6]	A	T	3.291e^-4	0.887	INTRON nAChRalpha6
3L	11329805	3L_11329805_SNP [dm3] 3L_11336705_SNP [dm6]	A	T	3.300e^-4	0.887	INTERGENIC
3R	21626136	3R_21626136_SNP [dm3] 3R_25800414_SNP [dm6]	G	A	3.304e^-4	0.887	INTERGENIC
X	7431791	X_7431791_SNP [dm3] X_7537758_SNP [dm6]	G	A	3.307e^-4	0.887	UPSTREAM CG32720 INTRON CG32719	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	16489554	2R_16489554_SNP [dm3] 2R_20602049_SNP [dm6]	C	T	3.307e^-4	0.887	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7246266	3L_7246266_SNP [dm3] 3L_7253166_SNP [dm6]	G	T	3.314e^-4	0.887	DOWNSTREAM CR43470 INTRON CG14830
3L	5860192	3L_5860192_SNP [dm3] 3L_5867092_SNP [dm6]	T	A	3.320e^-4	0.887	INTERGENIC
3L	9248644	3L_9248644_INS [dm3] 3L_9255544_INS [dm6]	C	CAAAAAA	3.326e^-4	0.887	INTRON GluRIB
2L	8831407	2L_8831407_SNP [dm3] 2L_8831407_SNP [dm6]	G	A	3.326e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5678529	3L_5678529_DEL [dm3] 3L_5685429_DEL [dm6]	TGT	T	3.327e^-4	0.887	INTRON sif
3L	12737850	3L_12737850_SNP [dm3] 3L_12744750_SNP [dm6]	G	A	3.327e^-4	0.887	SPLICE_SITE_REGION CG32112 UPSTREAM CG32109 INTRON CG32112
2L	1495741	2L_1495741_SNP [dm3] 2L_1495741_SNP [dm6]	C	A	3.335e^-4	0.887	UTR_5_PRIME CG31926 DOWNSTREAM CG33128
2L	15860285	2L_15860285_SNP [dm3] 2L_15860285_SNP [dm6]	A	T	3.337e^-4	0.887	INTERGENIC
2L	2839875	2L_2839875_SNP [dm3] 2L_2839875_SNP [dm6]	T	A	3.338e^-4	0.887	UPSTREAM CG2975 DOWNSTREAM CR45342 & 1 other INTERGENIC
2L	19125462	2L_19125462_SNP [dm3] 2L_19125462_SNP [dm6]	C	A	3.344e^-4	0.887	SYNONYMOUS_CODING l_2_37Cb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	745992	3L_745992_DEL [dm3] 3L_745992_DEL [dm6]	TTATAGT	T	3.345e^-4	0.887	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4009440	2L_4009440_SNP [dm3] 2L_4009440_SNP [dm6]	A	G	3.351e^-4	0.887	DOWNSTREAM CG43774 INTERGENIC
X	8144531	X_8144531_SNP [dm3] X_8250498_SNP [dm6]	G	T	3.358e^-4	0.887	SYNONYMOUS_CODING ND75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18652973	3R_18652973_SNP [dm3] 3R_22827251_SNP [dm6]	C	G	3.360e^-4	0.887	EXON CR44350
2R	6470355	2R_6470355_SNP [dm3] 2R_10582850_SNP [dm6]	A	G	3.362e^-4	0.887	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	8088451	3R_8088451_SNP [dm3] 3R_12262729_SNP [dm6]	T	C	3.364e^-4	0.887	NON_SYNONYMOUS_CODING CG44037 INTRON svp
X	7436558	X_7436558_SNP [dm3] X_7542525_SNP [dm6]	T	A	3.368e^-4	0.887	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12466448	2R_12466448_SNP [dm3] 2R_16578943_SNP [dm6]	G	A	3.369e^-4	0.887	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	15859794	2L_15859794_SNP [dm3] 2L_15859794_SNP [dm6]	A	G	3.375e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	9821846	2R_9821846_SNP [dm3] 2R_13934341_SNP [dm6]	A	T	3.383e^-4	0.887	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_ttk
2R	7015560	2R_7015560_SNP [dm3] 2R_11128055_SNP [dm6]	A	T	3.386e^-4	0.887	INTERGENIC
2L	15840654	2L_15840654_SNP [dm3] 2L_15840654_SNP [dm6]	T	G	3.387e^-4	0.887	DOWNSTREAM CR45694 INTERGENIC
3L	9621044	3L_9621044_SNP [dm3] 3L_9627944_SNP [dm6]	A	T	3.389e^-4	0.887	SYNONYMOUS_CODING Or67b UPSTREAM CG8336 DOWNSTREAM CG3335
2L	10219783	2L_10219783_SNP [dm3] 2L_10219783_SNP [dm6]	A	T	3.395e^-4	0.887	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
X	9446846	X_9446846_SNP [dm3] X_9552813_SNP [dm6]	G	A	3.396e^-4	0.887	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	6300320	3R_6300320_DEL [dm3] 3R_10474598_DEL [dm6]	GCTGTTGTTG	G	3.396e^-4	0.887	INTERGENIC
3L	9616563	3L_9616563_SNP [dm3] 3L_9623463_SNP [dm6]	C	A	3.399e^-4	0.887	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5678667	3L_5678667_SNP [dm3] 3L_5685567_SNP [dm6]	C	T	3.403e^-4	0.887	INTRON sif
3R	18261012	3R_18261012_SNP [dm3] 3R_22435290_SNP [dm6]	C	T	3.411e^-4	0.887	INTRON CG13847
3L	10784886	3L_10784886_SNP [dm3] 3L_10791786_SNP [dm6]	C	T	3.413e^-4	0.887	INTERGENIC
3L	5097054	3L_5097054_SNP [dm3] 3L_5097054_SNP [dm6]	A	C	3.414e^-4	0.887	INTERGENIC
3L	5097059	3L_5097059_SNP [dm3] 3L_5097059_SNP [dm6]	C	G	3.414e^-4	0.887	INTERGENIC
3R	9277421	3R_9277421_SNP [dm3] 3R_13451699_SNP [dm6]	G	T	3.421e^-4	0.887	INTRON CG14372
3L	5839105	3L_5839105_SNP [dm3] 3L_5846005_SNP [dm6]	A	T	3.428e^-4	0.887	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11570162	3L_11570162_SNP [dm3] 3L_11577062_SNP [dm6]	T	G	3.430e^-4	0.887	UTR_3_PRIME CG33271 UPSTREAM CG33489
3L	12737352	3L_12737352_SNP [dm3] 3L_12744252_SNP [dm6]	A	C	3.437e^-4	0.887	SYNONYMOUS_CODING CG32112
3L	5860140	3L_5860140_SNP [dm3] 3L_5867040_SNP [dm6]	G	A	3.448e^-4	0.887	INTERGENIC
2L	2538529	2L_2538529_SNP [dm3] 2L_2538529_SNP [dm6]	C	T	3.449e^-4	0.887	INTERGENIC
3R	9333788	3R_9333788_SNP [dm3] 3R_13508066_SNP [dm6]	G	A	3.449e^-4	0.887	INTERGENIC
3L	12736734	3L_12736734_SNP [dm3] 3L_12743634_SNP [dm6]	G	A	3.454e^-4	0.887	INTRON CG32112
2R	2428672	2R_2428672_SNP [dm3] 2R_6541167_SNP [dm6]	G	A	3.462e^-4	0.888	INTRON jing
2L	3543522	2L_3543522_SNP [dm3] 2L_3543522_SNP [dm6]	C	T	3.466e^-4	0.888	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	17913690	3R_17913690_SNP [dm3] 3R_22087968_SNP [dm6]	T	C	3.471e^-4	0.888	DOWNSTREAM CG5791 INTRON CG5778
3R	21687604	3R_21687604_DEL [dm3] 3R_25861882_DEL [dm6]	TTATCAGAA	T	3.480e^-4	0.889	INTRON CG5890
2R	12466889	2R_12466889_SNP [dm3] 2R_16579384_SNP [dm6]	A	C	3.500e^-4	0.89	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
2R	4902516	2R_4902516_SNP [dm3] 2R_9015011_SNP [dm6]	A	G	3.526e^-4	0.89	INTRON CG13744
2L	15855112	2L_15855112_SNP [dm3] 2L_15855112_SNP [dm6]	C	A	3.534e^-4	0.89	INTRON Tektin-A
3R	20724440	3R_20724440_SNP [dm3] 3R_24898718_SNP [dm6]	G	A	3.535e^-4	0.89	SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4035855	3L_4035855_SNP [dm3] 3L_4035855_SNP [dm6]	C	G	3.536e^-4	0.89	SYNONYMOUS_CODING Gr64f DOWNSTREAM Gr64d & 1 other	TF binding site BDTNP1_TFBS_slp1
X	18929045	X_18929045_SNP [dm3] X_19035012_SNP [dm6]	T	G	3.537e^-4	0.89	INTERGENIC
3L	13241322	3L_13241322_SNP [dm3] 3L_13248222_SNP [dm6]	T	C	3.537e^-4	0.89	SYNONYMOUS_CODING CG32119 INTRON caps
2L	5331084	2L_5331084_SNP [dm3] 2L_5331084_SNP [dm6]	C	G	3.541e^-4	0.89	SYNONYMOUS_CODING fusl DOWNSTREAM TotM
2R	14523896	2R_14523896_SNP [dm3] 2R_18636391_SNP [dm6]	A	G	3.545e^-4	0.89	SYNONYMOUS_CODING CG30122	TF binding site mE1_TFBS_inv
3R	20772993	3R_20772993_SNP [dm3] 3R_24947271_SNP [dm6]	A	G	3.550e^-4	0.89	SYNONYMOUS_CODING Nmnat UPSTREAM CG13646 DOWNSTREAM Nmnat
2R	11485201	2R_11485201_SNP [dm3] 2R_15597696_SNP [dm6]	G	A	3.552e^-4	0.89	INTERGENIC
3L	7718052	3L_7718052_SNP [dm3] 3L_7724952_SNP [dm6]	C	G	3.565e^-4	0.89	NON_SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8121304	2R_8121304_INS [dm3] 2R_12233799_INS [dm6]	A	AA	3.572e^-4	0.89	DOWNSTREAM CR44313 INTERGENIC
2R	7430997	2R_7430997_SNP [dm3] 2R_11543492_SNP [dm6]	A	C	3.581e^-4	0.89	INTERGENIC
2R	8981009	2R_8981009_SNP [dm3] 2R_13093504_SNP [dm6]	C	G	3.583e^-4	0.89	INTERGENIC
X	8144573	X_8144573_SNP [dm3] X_8250540_SNP [dm6]	G	A	3.583e^-4	0.89	SYNONYMOUS_CODING ND75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4121626	2L_4121626_SNP [dm3] 2L_4121626_SNP [dm6]	C	T	3.586e^-4	0.89	UTR_3_PRIME Sr-CIII UPSTREAM Sr-CI
2L	7715684	2L_7715684_SNP [dm3] 2L_7715684_SNP [dm6]	A	T	3.588e^-4	0.89	INTRON CG33296	TF binding site mE1_TFBS_inv
3L	9614934	3L_9614934_SNP [dm3] 3L_9621834_SNP [dm6]	C	T	3.596e^-4	0.89	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7432306	X_7432306_SNP [dm3] X_7538273_SNP [dm6]	C	T	3.611e^-4	0.89	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9618838	2L_9618838_SNP [dm3] 2L_9618838_SNP [dm6]	A	C	3.624e^-4	0.89	INTRON GlcAT-S
3L	12085601	3L_12085601_SNP [dm3] 3L_12092501_SNP [dm6]	G	C	3.625e^-4	0.89	INTERGENIC
2R	16198095	2R_16198095_SNP [dm3] 2R_20310590_SNP [dm6]	A	G	3.626e^-4	0.89	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18647712	3L_18647712_SNP [dm3] 3L_18654612_SNP [dm6]	T	A	3.632e^-4	0.89	INTRON MYPT-75D
2R	19586558	2R_19586558_DEL [dm3] 2R_23699035_DEL [dm6]	TCCATCGCT	T	3.654e^-4	0.89	UTR_3_PRIME CG4091 DOWNSTREAM mRpL43
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	3.654e^-4	0.89	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3R	10494656	3R_10494656_SNP [dm3] 3R_14668934_SNP [dm6]	G	A	3.657e^-4	0.89	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3046469	2L_3046469_SNP [dm3] 2L_3046469_SNP [dm6]	T	G	3.659e^-4	0.89	UPSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad
3R	23663026	3R_23663026_DEL [dm3] 3R_27837304_DEL [dm6]	AAG	A	3.668e^-4	0.89	INTRON CG34353
2R	8695804	2R_8695804_SNP [dm3] 2R_12808299_SNP [dm6]	A	G	3.670e^-4	0.89	DOWNSTREAM CG17580 INTERGENIC
2R	863750	2R_863750_SNP [dm3] 2R_4976245_SNP [dm6]	C	T	3.682e^-4	0.89	INTRON Ir41a
X	3531150	X_3531150_SNP [dm3] X_3637117_SNP [dm6]	T	G	3.684e^-4	0.89	INTRON AstA-R1
3L	11329811	3L_11329811_SNP [dm3] 3L_11336711_SNP [dm6]	G	T	3.686e^-4	0.89	INTERGENIC
2R	8981005	2R_8981005_SNP [dm3] 2R_13093500_SNP [dm6]	C	T	3.687e^-4	0.89	INTERGENIC
2R	8134222	2R_8134222_SNP [dm3] 2R_12246717_SNP [dm6]	T	G	3.697e^-4	0.89	EXON CR44315
2R	6917959	2R_6917959_SNP [dm3] 2R_11030454_SNP [dm6]	C	T	3.700e^-4	0.89	INTRON luna
2R	7029733	2R_7029733_DEL [dm3] 2R_11142228_DEL [dm6]	ATG	A	3.703e^-4	0.89	INTRON CG13229
3L	12750567	3L_12750567_SNP [dm3] 3L_12757467_SNP [dm6]	T	A	3.707e^-4	0.89	INTRON CG32113
3L	21392259	3L_21392259_SNP [dm3] 3L_21399159_SNP [dm6]	T	C	3.708e^-4	0.89	INTRON rgn
3R	19911281	3R_19911281_SNP [dm3] 3R_24085559_SNP [dm6]	T	A	3.719e^-4	0.89	INTRON 4EHP
2L	6373347	2L_6373347_SNP [dm3] 2L_6373347_SNP [dm6]	T	C	3.726e^-4	0.89	UTR_5_PRIME slam UPSTREAM slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2928260	3R_2928260_SNP [dm3] 3R_7102538_SNP [dm6]	T	A	3.736e^-4	0.89	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	12365365	X_12365365_SNP [dm3] X_12471332_SNP [dm6]	A	T	3.739e^-4	0.89	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10887366	2R_10887366_SNP [dm3] 2R_14999861_SNP [dm6]	A	G	3.743e^-4	0.89	INTERGENIC
X	10681768	X_10681768_SNP [dm3] X_10787735_SNP [dm6]	A	T	3.752e^-4	0.89	UPSTREAM sesB & 1 other DOWNSTREAM Imp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19091984	X_19091984_SNP [dm3] X_19197951_SNP [dm6]	G	T	3.754e^-4	0.89	UTR_3_PRIME CG7990
X	12365640	X_12365640_SNP [dm3] X_12471607_SNP [dm6]	C	T	3.756e^-4	0.89	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12366208	X_12366208_SNP [dm3] X_12472175_SNP [dm6]	T	A	3.756e^-4	0.89	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8153746	2R_8153746_SNP [dm3] 2R_12266241_SNP [dm6]	G	A	3.762e^-4	0.89	INTRON Cam
3L	10835694	3L_10835694_SNP [dm3] 3L_10842594_SNP [dm6]	T	C	3.768e^-4	0.89	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15855002	2L_15855002_SNP [dm3] 2L_15855002_SNP [dm6]	G	C	3.770e^-4	0.89	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
3R	18814025	3R_18814025_SNP [dm3] 3R_22988303_SNP [dm6]	C	T	3.780e^-4	0.89	SYNONYMOUS_CODING Or94a UPSTREAM Or94b INTRON Nha2
3R	22947314	3R_22947314_SNP [dm3] 3R_27121592_SNP [dm6]	G	A	3.782e^-4	0.89	DOWNSTREAM CG6059 & 1 other INTERGENIC
X	554900	X_554900_SNP [dm3] X_660867_SNP [dm6]	T	A	3.783e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11338517	3L_11338517_SNP [dm3] 3L_11345417_SNP [dm6]	G	T	3.786e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7436549	X_7436549_SNP [dm3] X_7542516_SNP [dm6]	G	T	3.797e^-4	0.89	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11458729	3L_11458729_SNP [dm3] 3L_11465629_SNP [dm6]	A	T	3.800e^-4	0.89	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	22276623	2L_22276623_SNP [dm3] 2L_22276623_SNP [dm6]	A	C	3.800e^-4	0.89	INTERGENIC	transposable element FlyBase
2L	10219786	2L_10219786_SNP [dm3] 2L_10219786_SNP [dm6]	A	T	3.805e^-4	0.89	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
3L	18647690	3L_18647690_SNP [dm3] 3L_18654590_SNP [dm6]	A	C	3.806e^-4	0.89	INTRON MYPT-75D
2L	1545456	2L_1545456_SNP [dm3] 2L_1545456_SNP [dm6]	T	G	3.808e^-4	0.89	INTERGENIC
X	12360284	X_12360284_SNP [dm3] X_12466251_SNP [dm6]	C	A	3.810e^-4	0.89	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16403358	2R_16403358_SNP [dm3] 2R_20515853_SNP [dm6]	A	G	3.813e^-4	0.89	INTERGENIC
3L	8326917	3L_8326917_SNP [dm3] 3L_8333817_SNP [dm6]	A	G	3.814e^-4	0.89	INTERGENIC
X	6257184	X_6257184_SNP [dm3] X_6363151_SNP [dm6]	G	A	3.816e^-4	0.89	UPSTREAM swaPsi DOWNSTREAM swa EXON swaPsi	TF binding site mE1_TFBS_inv
3R	23663059	3R_23663059_SNP [dm3] 3R_27837337_SNP [dm6]	T	G	3.817e^-4	0.89	INTRON CG34353
3L	2193691	3L_2193691_SNP [dm3] 3L_2193691_SNP [dm6]	G	A	3.827e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17768796	2L_17768796_SNP [dm3] 2L_17768796_SNP [dm6]	A	C	3.835e^-4	0.89	INTRON CadN
2R	11074753	2R_11074753_SNP [dm3] 2R_15187248_SNP [dm6]	T	G	3.835e^-4	0.89	INTRON igl
3R	26937747	3R_26937747_SNP [dm3] 3R_31112025_SNP [dm6]	G	A	3.844e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10887549	2R_10887549_SNP [dm3] 2R_15000044_SNP [dm6]	A	T	3.847e^-4	0.89	INTERGENIC
2R	6741926	2R_6741926_SNP [dm3] 2R_10854421_SNP [dm6]	C	T	3.851e^-4	0.89	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
X	12165465	X_12165465_SNP [dm3] X_12271432_SNP [dm6]	G	A	3.854e^-4	0.89	INTRON Ten-a
3R	5887411	3R_5887411_SNP [dm3] 3R_10061689_SNP [dm6]	G	A	3.856e^-4	0.89	UPSTREAM CG33630 DOWNSTREAM Npc2c EXON CR45205 & 1 other
2R	5561745	2R_5561745_SNP [dm3] 2R_9674240_SNP [dm6]	G	C	3.857e^-4	0.89	INTRON Mmp2
2L	1266122	2L_1266122_SNP [dm3] 2L_1266122_SNP [dm6]	A	G	3.861e^-4	0.89	INTRON robo3
2R	15680738	2R_15680738_SNP [dm3] 2R_19793233_SNP [dm6]	T	C	3.865e^-4	0.89	INTERGENIC
X	5899907	X_5899907_SNP [dm3] X_6005874_SNP [dm6]	T	G	3.867e^-4	0.89	DOWNSTREAM CR44498 INTERGENIC
X	554818	X_554818_INS [dm3] X_660785_INS [dm6]	C	CTAACTATTT	3.874e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17800704	2R_17800704_SNP [dm3] 2R_21913199_SNP [dm6]	T	C	3.885e^-4	0.89	INTRON Fili
3L	12767447	3L_12767447_SNP [dm3] 3L_12774347_SNP [dm6]	C	G	3.894e^-4	0.89	NON_SYNONYMOUS_CODING CG32106 UPSTREAM Hip1	TF binding site mE1_TFBS_sens
3R	18263474	3R_18263474_SNP [dm3] 3R_22437752_SNP [dm6]	A	T	3.895e^-4	0.89	INTERGENIC
3R	23663061	3R_23663061_SNP [dm3] 3R_27837339_SNP [dm6]	T	C	3.896e^-4	0.89	INTRON CG34353
X	21072057	X_21072057_SNP [dm3] X_21201030_SNP [dm6]	A	G	3.902e^-4	0.89	INTERGENIC
3R	9333787	3R_9333787_SNP [dm3] 3R_13508065_SNP [dm6]	G	A	3.904e^-4	0.89	INTERGENIC
3L	15065964	3L_15065964_SNP [dm3] 3L_15072864_SNP [dm6]	C	T	3.907e^-4	0.89	NON_SYNONYMOUS_CODING cp309 UPSTREAM cp309	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	7432101	X_7432101_SNP [dm3] X_7538068_SNP [dm6]	A	G	3.907e^-4	0.89	INTRON CG32719	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	7029643	2R_7029643_SNP [dm3] 2R_11142138_SNP [dm6]	C	T	3.912e^-4	0.89	INTRON CG13229
3L	3597912	3L_3597912_SNP [dm3] 3L_3597912_SNP [dm6]	C	T	3.916e^-4	0.89	INTRON Eip63E	TF binding site mE1_TFBS_cad
2R	16558411	2R_16558411_SNP [dm3] 2R_20670906_SNP [dm6]	C	T	3.924e^-4	0.89	START_GAINED CG30152 UTR_5_PRIME CG30152 & 1 other UPSTREAM CG30152 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3582890	2L_3582890_SNP [dm3] 2L_3582890_SNP [dm6]	G	A	3.928e^-4	0.89	INTERGENIC
2L	9026134	2L_9026134_SNP [dm3] 2L_9026134_SNP [dm6]	T	G	3.931e^-4	0.89	UPSTREAM CG9582 INTRON CG9582 EXON CR44352
2L	15596288	2L_15596288_SNP [dm3] 2L_15596288_SNP [dm6]	G	T	3.934e^-4	0.89	INTERGENIC
3L	12750309	3L_12750309_SNP [dm3] 3L_12757209_SNP [dm6]	C	G	3.935e^-4	0.89	NON_SYNONYMOUS_CODING CG32113
3L	12064679	3L_12064679_SNP [dm3] 3L_12071579_SNP [dm6]	A	G	3.936e^-4	0.89	SPLICE_SITE_REGION Sema-5c INTRON Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7432088	X_7432088_SNP [dm3] X_7538055_SNP [dm6]	A	G	3.968e^-4	0.891	INTRON CG32719	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	12523964	2R_12523964_SNP [dm3] 2R_16636459_SNP [dm6]	A	C	3.971e^-4	0.891	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15846433	2L_15846433_SNP [dm3] 2L_15846433_SNP [dm6]	G	T	3.973e^-4	0.891	UPSTREAM CR43763 INTERGENIC
2L	15847387	2L_15847387_SNP [dm3] 2L_15847387_SNP [dm6]	A	C	3.985e^-4	0.891	DOWNSTREAM CR43763 INTERGENIC
3L	22697835	3L_22697835_SNP [dm3] 3L_22704735_SNP [dm6]	G	T	3.992e^-4	0.891	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12800357	2L_12800357_SNP [dm3] 2L_12800357_SNP [dm6]	A	G	4.000e^-4	0.891	INTERGENIC
3L	18370172	3L_18370172_SNP [dm3] 3L_18377072_SNP [dm6]	A	T	4.013e^-4	0.891	INTERGENIC
3L	10782678	3L_10782678_SNP [dm3] 3L_10789578_SNP [dm6]	A	G	4.014e^-4	0.891	EXON CR44545
3R	22880144	3R_22880144_SNP [dm3] 3R_27054422_SNP [dm6]	A	C	4.017e^-4	0.891	INTRON RYa-R
3L	2104943	3L_2104943_SNP [dm3] 3L_2104943_SNP [dm6]	G	T	4.018e^-4	0.891	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3R	24458206	3R_24458206_SNP [dm3] 3R_28632484_SNP [dm6]	G	A	4.025e^-4	0.891	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8133913	2R_8133913_SNP [dm3] 2R_12246408_SNP [dm6]	T	C	4.031e^-4	0.891	DOWNSTREAM CR44315 INTERGENIC
2L	12726526	2L_12726526_SNP [dm3] 2L_12726526_SNP [dm6]	C	T	4.041e^-4	0.891	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	20940921	X_20940921_SNP [dm3] X_21069894_SNP [dm6]	C	T	4.046e^-4	0.891	INTRON bves
2L	952804	2L_952804_SNP [dm3] 2L_952804_SNP [dm6]	G	A	4.052e^-4	0.891	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18922507	2R_18922507_SNP [dm3] 2R_23034984_SNP [dm6]	C	T	4.052e^-4	0.891	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	11075992	2R_11075992_SNP [dm3] 2R_15188487_SNP [dm6]	G	A	4.061e^-4	0.891	INTRON igl
3R	16349000	3R_16349000_INS [dm3] 3R_20523278_INS [dm6]	A	AT	4.062e^-4	0.891	INTERGENIC
2L	9155825	2L_9155825_SNP [dm3] 2L_9155825_SNP [dm6]	T	A	4.069e^-4	0.891	INTRON CG32982
2L	14558042	2L_14558042_SNP [dm3] 2L_14558042_SNP [dm6]	A	G	4.070e^-4	0.891	EXON CR44854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18480810	3R_18480810_SNP [dm3] 3R_22655088_SNP [dm6]	A	T	4.083e^-4	0.891	INTRON CG45058
2R	14609379	2R_14609379_SNP [dm3] 2R_18721874_SNP [dm6]	G	T	4.085e^-4	0.891	INTRON Hs3st-A
2R	7039065	2R_7039065_SNP [dm3] 2R_11151560_SNP [dm6]	C	T	4.086e^-4	0.891	INTRON CG13229
2R	6916667	2R_6916667_DEL [dm3] 2R_11029162_DEL [dm6]	ACTGTACAACGTATCAGAG...	C	4.090e^-4	0.891	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4121676	2L_4121676_SNP [dm3] 2L_4121676_SNP [dm6]	G	C	4.092e^-4	0.891	UPSTREAM Sr-CI DOWNSTREAM Sr-CIII INTERGENIC
3L	12744145	3L_12744145_DEL [dm3] 3L_12751045_DEL [dm6]	TGTGTAAAG	T	4.095e^-4	0.891	UPSTREAM Klc INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
3R	21027333	3R_21027333_SNP [dm3] 3R_25201611_SNP [dm6]	G	A	4.097e^-4	0.891	SYNONYMOUS_CODING Cad96Ca INTRON CG13654
2R	11772894	2R_11772894_SNP [dm3] 2R_15885389_SNP [dm6]	G	A	4.099e^-4	0.891	SYNONYMOUS_CODING sli	TF binding site mE1_TFBS_sens
2R	50493	2R_50493_DEL [dm3] 2R_4162988_DEL [dm6]	TT	T	4.101e^-4	0.891	INTERGENIC
3L	3787532	3L_3787532_SNP [dm3] 3L_3787532_SNP [dm6]	T	A	4.104e^-4	0.891	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5871488	2L_5871488_SNP [dm3] 2L_5871488_SNP [dm6]	G	A	4.104e^-4	0.891	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	10576664	3R_10576664_SNP [dm3] 3R_14750942_SNP [dm6]	G	A	4.130e^-4	0.891	DOWNSTREAM CG7362 INTRON jvl & 1 other
3L	4265084	3L_4265084_SNP [dm3] 3L_4265084_SNP [dm6]	T	A	4.159e^-4	0.891	INTRON CG1273
3L	11426712	3L_11426712_SNP [dm3] 3L_11433612_SNP [dm6]	C	G	4.163e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15978400	2L_15978400_SNP [dm3] 2L_15978400_SNP [dm6]	T	C	4.168e^-4	0.891	INTERGENIC
3L	2196286	3L_2196286_SNP [dm3] 3L_2196286_SNP [dm6]	G	T	4.171e^-4	0.891	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	10394100	X_10394100_SNP [dm3] X_10500067_SNP [dm6]	C	T	4.177e^-4	0.891	INTRON spri
3L	20599678	3L_20599678_SNP [dm3] 3L_20606578_SNP [dm6]	T	C	4.179e^-4	0.891	INTRON knrl
3L	1448601	3L_1448601_SNP [dm3] 3L_1448601_SNP [dm6]	G	T	4.179e^-4	0.891	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	1448631	3L_1448631_SNP [dm3] 3L_1448631_SNP [dm6]	G	A	4.179e^-4	0.891	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	1448639	3L_1448639_DEL [dm3] 3L_1448639_DEL [dm6]	AGA	A	4.179e^-4	0.891	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	1448644	3L_1448644_INS [dm3] 3L_1448644_INS [dm6]	T	TG	4.179e^-4	0.891	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	1448686	3L_1448686_SNP [dm3] 3L_1448686_SNP [dm6]	C	T	4.179e^-4	0.891	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2R	10768381	2R_10768381_SNP [dm3] 2R_14880876_SNP [dm6]	C	T	4.193e^-4	0.891	NON_SYNONYMOUS_CODING Cyp6a9	TF binding site mE1_TFBS_inv
X	7878295	X_7878295_SNP [dm3] X_7984262_SNP [dm6]	C	T	4.195e^-4	0.891	SYNONYMOUS_CODING sn	TF binding site mE1_TFBS_chinmo
3L	12722873	3L_12722873_SNP [dm3] 3L_12729773_SNP [dm6]	G	A	4.198e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12751154	3L_12751154_SNP [dm3] 3L_12758054_SNP [dm6]	A	C	4.200e^-4	0.891	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7685350	3L_7685350_SNP [dm3] 3L_7692250_SNP [dm6]	T	C	4.208e^-4	0.891	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
2R	2426247	2R_2426247_SNP [dm3] 2R_6538742_SNP [dm6]	C	A	4.210e^-4	0.891	INTRON jing
2L	15865336	2L_15865336_SNP [dm3] 2L_15865336_SNP [dm6]	T	G	4.213e^-4	0.891	NON_SYNONYMOUS_CODING CG42792
2L	3062298	2L_3062298_SNP [dm3] 2L_3062298_SNP [dm6]	C	A	4.216e^-4	0.891	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5008687	3L_5008687_SNP [dm3] 3L_5008687_SNP [dm6]	T	A	4.219e^-4	0.891	INTRON Con
2L	18955327	2L_18955327_SNP [dm3] 2L_18955327_SNP [dm6]	T	A	4.229e^-4	0.891	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	8153887	2R_8153887_SNP [dm3] 2R_12266382_SNP [dm6]	G	A	4.230e^-4	0.891	INTRON Cam
3L	1133136	3L_1133136_DEL [dm3] 3L_1133136_DEL [dm6]	GCACCGGGTTTTCCGG...	G	4.248e^-4	0.891	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8323062	3L_8323062_SNP [dm3] 3L_8329962_SNP [dm6]	A	C	4.269e^-4	0.891	NON_SYNONYMOUS_CODING CG34462
3R	17139851	3R_17139851_SNP [dm3] 3R_21314129_SNP [dm6]	A	T	4.270e^-4	0.891	EXON Hsromega
3R	26616439	3R_26616439_SNP [dm3] 3R_30790717_SNP [dm6]	T	G	4.273e^-4	0.891	UTR_3_PRIME wts DOWNSTREAM mir-1013
X	19091077	X_19091077_SNP [dm3] X_19197044_SNP [dm6]	T	C	4.278e^-4	0.891	UTR_3_PRIME CG7990
2L	1494751	2L_1494751_SNP [dm3] 2L_1494751_SNP [dm6]	G	C	4.291e^-4	0.891	SYNONYMOUS_CODING CG33128 UPSTREAM CG31926 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7050830	2R_7050830_SNP [dm3] 2R_11163325_SNP [dm6]	G	T	4.296e^-4	0.891	INTRON shn & 1 other
3L	12755527	3L_12755527_SNP [dm3] 3L_12762427_SNP [dm6]	A	C	4.299e^-4	0.891	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10101095	2L_10101095_SNP [dm3] 2L_10101095_SNP [dm6]	A	G	4.301e^-4	0.891	INTRON CG34109 & 1 other
3L	4696165	3L_4696165_SNP [dm3] 3L_4696165_SNP [dm6]	G	A	4.303e^-4	0.891	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21075799	X_21075799_SNP [dm3] X_21204772_SNP [dm6]	T	C	4.307e^-4	0.891	DOWNSTREAM CG32521 INTERGENIC
2R	6912876	2R_6912876_SNP [dm3] 2R_11025371_SNP [dm6]	C	A	4.309e^-4	0.891	INTRON luna
2R	11074751	2R_11074751_SNP [dm3] 2R_15187246_SNP [dm6]	G	A	4.309e^-4	0.891	INTRON igl
3L	5852034	3L_5852034_DEL [dm3] 3L_5858934_DEL [dm6]	AA	A	4.309e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10878350	2R_10878350_SNP [dm3] 2R_14990845_SNP [dm6]	T	A	4.311e^-4	0.891	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	17985177	3R_17985177_SNP [dm3] 3R_22159455_SNP [dm6]	A	T	4.324e^-4	0.891	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	12751160	3L_12751160_SNP [dm3] 3L_12758060_SNP [dm6]	C	A	4.328e^-4	0.891	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3658823	2L_3658823_SNP [dm3] 2L_3658823_SNP [dm6]	T	G	4.328e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16433614	X_16433614_SNP [dm3] X_16539581_SNP [dm6]	C	A	4.328e^-4	0.891	NON_SYNONYMOUS_CODING CG9903
3R	13668572	3R_13668572_SNP [dm3] 3R_17842850_SNP [dm6]	A	G	4.338e^-4	0.891	INTRON tinc
2L	22021107	2L_22021107_SNP [dm3] 2L_22021107_SNP [dm6]	A	G	4.340e^-4	0.891	NON_SYNONYMOUS_CODING tio DOWNSTREAM CR33987	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26515596	3R_26515596_SNP [dm3] 3R_30689874_SNP [dm6]	T	A	4.341e^-4	0.891	UPSTREAM Spn100A INTERGENIC
2R	7427862	2R_7427862_SNP [dm3] 2R_11540357_SNP [dm6]	A	C	4.342e^-4	0.891	INTERGENIC
3L	12751897	3L_12751897_SNP [dm3] 3L_12758797_SNP [dm6]	T	C	4.346e^-4	0.891	INTRON CG32113
2R	17677701	2R_17677701_SNP [dm3] 2R_21790196_SNP [dm6]	C	T	4.354e^-4	0.891	SYNONYMOUS_CODING lox2
2L	5681421	2L_5681421_SNP [dm3] 2L_5681421_SNP [dm6]	A	T	4.357e^-4	0.891	INTERGENIC
2R	11284893	2R_11284893_SNP [dm3] 2R_15397388_SNP [dm6]	G	C	4.363e^-4	0.891	INTERGENIC
2R	16666882	2R_16666882_SNP [dm3] 2R_20779377_SNP [dm6]	A	T	4.363e^-4	0.891	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2L	9233333	2L_9233333_SNP [dm3] 2L_9233333_SNP [dm6]	A	C	4.371e^-4	0.891	INTRON tai
2L	22692498	2L_22692498_SNP [dm3] 2L_22799766_SNP [dm6]	T	A	4.379e^-4	0.891	INTERGENIC
2R	9943181	2R_9943181_SNP [dm3] 2R_14055676_SNP [dm6]	C	T	4.381e^-4	0.891	INTRON mam	TF binding site mE1_TFBS_cad
2R	9595662	2R_9595662_SNP [dm3] 2R_13708157_SNP [dm6]	A	G	4.381e^-4	0.891	INTRON fas
3L	12680553	3L_12680553_SNP [dm3] 3L_12687453_SNP [dm6]	G	A	4.385e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8413558	X_8413558_SNP [dm3] X_8519525_SNP [dm6]	C	A	4.403e^-4	0.891	INTRON Nrg	TF binding site mE1_TFBS_HSA
2R	4931454	2R_4931454_SNP [dm3] 2R_9043949_SNP [dm6]	T	G	4.404e^-4	0.891	SYNONYMOUS_CODING PPO2 DOWNSTREAM CG13743	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	916178	3L_916178_SNP [dm3] 3L_916178_SNP [dm6]	A	G	4.407e^-4	0.891	INTRON Glut1
2L	20293866	2L_20293866_SNP [dm3] 2L_20293866_SNP [dm6]	T	G	4.408e^-4	0.891	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26515590	3R_26515590_SNP [dm3] 3R_30689868_SNP [dm6]	T	A	4.412e^-4	0.891	UPSTREAM Spn100A INTERGENIC
2R	14526195	2R_14526195_SNP [dm3] 2R_18638690_SNP [dm6]	G	A	4.416e^-4	0.891	UPSTREAM tRNA:CR30227 INTRON CG30122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	9621505	3L_9621505_SNP [dm3] 3L_9628405_SNP [dm6]	A	G	4.420e^-4	0.891	UPSTREAM CG8336 INTRON Or67b
2L	879628	2L_879628_SNP [dm3] 2L_879628_SNP [dm6]	G	A	4.422e^-4	0.891	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1502750	2L_1502750_SNP [dm3] 2L_1502750_SNP [dm6]	T	C	4.422e^-4	0.891	UTR_5_PRIME CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18328661	2R_18328661_SNP [dm3] 2R_22441156_SNP [dm6]	T	C	4.432e^-4	0.891	INTERGENIC
2R	6122920	2R_6122920_SNP [dm3] 2R_10235415_SNP [dm6]	T	A	4.437e^-4	0.891	UPSTREAM CG12912 & 1 other INTRON Hr46
3R	17140251	3R_17140251_SNP [dm3] 3R_21314529_SNP [dm6]	C	T	4.438e^-4	0.891	EXON Hsromega
3L	9937526	3L_9937526_SNP [dm3] 3L_9944426_SNP [dm6]	A	G	4.444e^-4	0.891	INTRON CG34356
2R	17273225	2R_17273225_SNP [dm3] 2R_21385720_SNP [dm6]	C	T	4.445e^-4	0.891	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p
2L	3052527	2L_3052527_SNP [dm3] 2L_3052527_SNP [dm6]	T	C	4.448e^-4	0.891	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
3L	12761335	3L_12761335_SNP [dm3] 3L_12768235_SNP [dm6]	C	T	4.448e^-4	0.891	SYNONYMOUS_CODING CG32113 DOWNSTREAM Hip1
3L	10288246	3L_10288246_SNP [dm3] 3L_10295146_SNP [dm6]	T	A	4.455e^-4	0.891	INTERGENIC
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	4.461e^-4	0.891	INTRON CG34114
3R	14567642	3R_14567642_SNP [dm3] 3R_18741920_SNP [dm6]	G	T	4.462e^-4	0.891	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5860241	3L_5860241_SNP [dm3] 3L_5867141_SNP [dm6]	T	A	4.472e^-4	0.891	INTERGENIC
3R	26076925	3R_26076925_SNP [dm3] 3R_30251203_SNP [dm6]	A	T	4.477e^-4	0.891	DOWNSTREAM CG34299 INTRON CG9682
2L	4831554	2L_4831554_SNP [dm3] 2L_4831554_SNP [dm6]	A	G	4.485e^-4	0.891	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18092391	3L_18092391_SNP [dm3] 3L_18099291_SNP [dm6]	T	A	4.489e^-4	0.891	INTRON CG13698
3L	17360109	3L_17360109_SNP [dm3] 3L_17367009_SNP [dm6]	A	G	4.489e^-4	0.891	DOWNSTREAM Cad74A EXON CR45688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11912585	X_11912585_INS [dm3] X_12018552_INS [dm6]	A	AAATT	4.497e^-4	0.891	UPSTREAM CG15735 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	11566531	3R_11566531_SNP [dm3] 3R_15740809_SNP [dm6]	G	T	4.504e^-4	0.891	INTERGENIC
2L	10212297	2L_10212297_SNP [dm3] 2L_10212297_SNP [dm6]	G	A	4.510e^-4	0.891	INTRON CG4901
2L	2839882	2L_2839882_SNP [dm3] 2L_2839882_SNP [dm6]	A	C	4.518e^-4	0.891	UPSTREAM CG2975 DOWNSTREAM CR45342 & 1 other INTERGENIC
2L	2993587	2L_2993587_SNP [dm3] 2L_2993587_SNP [dm6]	A	G	4.523e^-4	0.891	UTR_5_PRIME CG3558 UPSTREAM okr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1286960	3L_1286960_SNP [dm3] 3L_1286960_SNP [dm6]	G	A	4.524e^-4	0.891	INTRON CG32333
2R	16155408	2R_16155408_SNP [dm3] 2R_20267903_SNP [dm6]	G	A	4.525e^-4	0.891	NON_SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21357562	X_21357562_SNP [dm3] X_21486535_SNP [dm6]	G	C	4.531e^-4	0.891	INTERGENIC
3R	22282195	3R_22282195_SNP [dm3] 3R_26456473_SNP [dm6]	A	G	4.548e^-4	0.891	UPSTREAM CG14237 & 1 other INTERGENIC
2R	8131275	2R_8131275_SNP [dm3] 2R_12243770_SNP [dm6]	A	C	4.563e^-4	0.891	DOWNSTREAM CG43244 & 1 other INTERGENIC
3L	17319375	3L_17319375_SNP [dm3] 3L_17326275_SNP [dm6]	C	T	4.566e^-4	0.891	UPSTREAM CG13725 INTERGENIC
X	15323363	X_15323363_SNP [dm3] X_15429330_SNP [dm6]	G	T	4.568e^-4	0.891	INTRON Cngl
2L	9868590	2L_9868590_SNP [dm3] 2L_9868590_SNP [dm6]	C	T	4.572e^-4	0.891	INTRON nAChRalpha6
3L	9621525	3L_9621525_SNP [dm3] 3L_9628425_SNP [dm6]	C	A	4.591e^-4	0.891	UPSTREAM CG8336 INTRON Or67b
3L	2080585	3L_2080585_SNP [dm3] 3L_2080585_SNP [dm6]	A	G	4.595e^-4	0.891	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7081260	2R_7081260_SNP [dm3] 2R_11193755_SNP [dm6]	T	C	4.599e^-4	0.891	INTRON shn
2R	16198100	2R_16198100_SNP [dm3] 2R_20310595_SNP [dm6]	G	A	4.601e^-4	0.891	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2994586	2L_2994586_SNP [dm3] 2L_2994586_SNP [dm6]	T	A	4.602e^-4	0.891	INTRON CG3558	TF binding site BDTNP1_TFBS_sna
3L	9621499	3L_9621499_DEL [dm3] 3L_9628399_DEL [dm6]	AA	A	4.604e^-4	0.891	UPSTREAM CG8336 INTRON Or67b
3L	12728265	3L_12728265_SNP [dm3] 3L_12735165_SNP [dm6]	T	C	4.604e^-4	0.891	NON_SYNONYMOUS_CODING Ptp69D UPSTREAM SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	10053726	X_10053726_SNP [dm3] X_10159693_SNP [dm6]	T	C	4.606e^-4	0.891	INTRON CR44894 & 1 other
2L	16022344	2L_16022344_SNP [dm3] 2L_16022344_SNP [dm6]	T	C	4.608e^-4	0.891	INTRON beat-Ic
3L	5678310	3L_5678310_SNP [dm3] 3L_5685210_SNP [dm6]	T	A	4.611e^-4	0.891	INTRON sif
X	20357118	X_20357118_SNP [dm3] X_20486091_SNP [dm6]	A	G	4.615e^-4	0.891	UPSTREAM CG15461 INTRON RhoGAP19D
2L	9164533	2L_9164533_SNP [dm3] 2L_9164533_SNP [dm6]	C	A	4.617e^-4	0.891	SYNONYMOUS_CODING CG13108 DOWNSTREAM CG32982 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6285050	3R_6285050_SNP [dm3] 3R_10459328_SNP [dm6]	G	T	4.623e^-4	0.891	INTERGENIC
X	9442983	X_9442983_SNP [dm3] X_9548950_SNP [dm6]	A	C	4.632e^-4	0.891	INTRON CG32700
2L	22056188	2L_22056188_SNP [dm3] 2L_22056188_SNP [dm6]	A	G	4.641e^-4	0.891	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3468550	2L_3468550_SNP [dm3] 2L_3468550_SNP [dm6]	G	C	4.642e^-4	0.891	SYNONYMOUS_CODING CG3238	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27669701	3R_27669701_SNP [dm3] 3R_31843979_SNP [dm6]	C	T	4.643e^-4	0.891	UTR_3_PRIME RhoGAP100F
3L	12999457	3L_12999457_SNP [dm3] 3L_13006357_SNP [dm6]	T	A	4.652e^-4	0.891	UPSTREAM CG11263 INTERGENIC
2L	736277	2L_736277_SNP [dm3] 2L_736277_SNP [dm6]	A	G	4.654e^-4	0.891	DOWNSTREAM Eaat2 INTERGENIC
3L	12748492	3L_12748492_SNP [dm3] 3L_12755392_SNP [dm6]	T	C	4.657e^-4	0.891	SYNONYMOUS_CODING CG32113 UPSTREAM CG10973	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	4.661e^-4	0.891	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3L	15166302	3L_15166302_DEL [dm3] 3L_15173202_DEL [dm6]	TACAT	T	4.664e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8347901	2L_8347901_SNP [dm3] 2L_8347901_SNP [dm6]	A	T	4.672e^-4	0.891	INTRON CG7778
3R	26068329	3R_26068329_SNP [dm3] 3R_30242607_SNP [dm6]	A	T	4.677e^-4	0.891	SPLICE_SITE_REGION CG9737 INTRON CG9737
2L	9550605	2L_9550605_SNP [dm3] 2L_9550605_SNP [dm6]	C	G	4.691e^-4	0.891	UTR_5_PRIME jp INTRON jp	TF binding site mE1_TFBS_cad
3R	14569474	3R_14569474_SNP [dm3] 3R_18743752_SNP [dm6]	G	A	4.693e^-4	0.891	UPSTREAM Mekk1 DOWNSTREAM CG7718 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17879049	2R_17879049_SNP [dm3] 2R_21991544_SNP [dm6]	A	G	4.705e^-4	0.891	INTRON CG34370
3L	3786955	3L_3786955_SNP [dm3] 3L_3786955_SNP [dm6]	C	G	4.706e^-4	0.891	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9809499	2L_9809499_SNP [dm3] 2L_9809499_SNP [dm6]	G	T	4.727e^-4	0.891	INTRON nAChRalpha6
3R	23663024	3R_23663024_SNP [dm3] 3R_27837302_SNP [dm6]	G	C	4.729e^-4	0.891	INTRON CG34353
2L	8325955	2L_8325955_SNP [dm3] 2L_8325955_SNP [dm6]	A	T	4.730e^-4	0.891	UPSTREAM CG7781 INTERGENIC
2R	12615416	2R_12615416_SNP [dm3] 2R_16727911_SNP [dm6]	G	A	4.733e^-4	0.891	INTRON CG30463
2L	22617658	2L_22617658_SNP [dm3] 2L_22724926_SNP [dm6]	G	T	4.734e^-4	0.891	INTRON CG40006
2L	15817411	2L_15817411_SNP [dm3] 2L_15817411_SNP [dm6]	T	A	4.736e^-4	0.891	INTERGENIC
3R	17140247	3R_17140247_SNP [dm3] 3R_21314525_SNP [dm6]	A	C	4.741e^-4	0.891	EXON Hsromega
3R	16694755	3R_16694755_SNP [dm3] 3R_20869033_SNP [dm6]	A	C	4.742e^-4	0.891	INTERGENIC
2L	15873897	2L_15873897_SNP [dm3] 2L_15873897_SNP [dm6]	A	T	4.752e^-4	0.891	INTERGENIC
X	13189483	X_13189483_SNP [dm3] X_13295450_SNP [dm6]	T	C	4.754e^-4	0.891	INTRON CG1764
X	15160428	X_15160428_SNP [dm3] X_15266395_SNP [dm6]	A	T	4.756e^-4	0.891	INTERGENIC
2L	2996134	2L_2996134_SNP [dm3] 2L_2996134_SNP [dm6]	T	C	4.757e^-4	0.891	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo
2R	15759939	2R_15759939_SNP [dm3] 2R_19872434_SNP [dm6]	G	C	4.757e^-4	0.891	INTERGENIC	TF binding site mE1_TFBS_sens
X	9442984	X_9442984_SNP [dm3] X_9548951_SNP [dm6]	T	C	4.761e^-4	0.891	INTRON CG32700
X	21359021	X_21359021_SNP [dm3] X_21487994_SNP [dm6]	G	A	4.766e^-4	0.891	INTERGENIC
3R	23936578	3R_23936578_SNP [dm3] 3R_28110856_SNP [dm6]	C	A	4.771e^-4	0.891	INTERGENIC
3R	26076971	3R_26076971_SNP [dm3] 3R_30251249_SNP [dm6]	C	T	4.776e^-4	0.891	SPLICE_SITE_REGION CG9682 SYNONYMOUS_CODING CG9682 DOWNSTREAM CG34299
2R	10176180	2R_10176180_SNP [dm3] 2R_14288675_SNP [dm6]	T	C	4.787e^-4	0.891	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_inv
2R	8145339	2R_8145339_SNP [dm3] 2R_12257834_SNP [dm6]	A	G	4.793e^-4	0.891	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

0.5μg/mL survivorship phenotype phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results