©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
X | 19496052 | X_19496052_INS [dm3] X_19602019_INS [dm6] | T | TTT | 7.939e-9 | 0.015 |
UPSTREAM
CG14220 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med
|
|
2L | 14846877 | 2L_14846877_SNP [dm3] 2L_14846877_SNP [dm6] | T | C | 8.444e-7 | 0.251 |
NON_SYNONYMOUS_CODING
CG15279 INTRON CG15279 |
||
2L | 17619907 | 2L_17619907_SNP [dm3] 2L_17619907_SNP [dm6] | C | T | 8.489e-7 | 0.251 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
2L | 19715057 | 2L_19715057_DEL [dm3] 2L_19715057_DEL [dm6] | CACCGGGC | C | 8.626e-7 | 0.251 |
INTRON
Lar |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 4134760 | 3R_4134760_SNP [dm3] 3R_8309038_SNP [dm6] | A | G | 9.637e-7 | 0.251 |
SYNONYMOUS_CODING
CG11693 UPSTREAM mir-4918 & 1 other |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
|
|
3R | 22520225 | 3R_22520225_INS [dm3] 3R_26694503_INS [dm6] | G | GTTGG | 1.075e-6 | 0.251 |
UPSTREAM
TwdlQ INTERGENIC |
||
2R | 7280573 | 2R_7280573_DEL [dm3] 2R_11393068_DEL [dm6] | CAAGTGATC | C | 1.228e-6 | 0.251 |
INTRON
sprt |
||
2R | 16762358 | 2R_16762358_SNP [dm3] 2R_20874853_SNP [dm6] | C | T | 1.284e-6 | 0.251 |
NON_SYNONYMOUS_CODING
Ipk1 INTRON Ipk1 |
||
3R | 25222566 | 3R_25222566_SNP [dm3] 3R_29396844_SNP [dm6] | C | T | 1.389e-6 | 0.251 |
INTRON
Ptp99A |
||
2L | 21064263 | 2L_21064263_SNP [dm3] 2L_21064263_SNP [dm6] | T | C | 1.420e-6 | 0.251 |
INTRON
CG9265 |
TF binding site
mE1_TFBS_cnc mE1_TFBS_HSA
|
|
2L | 3405028 | 2L_3405028_SNP [dm3] 2L_3405028_SNP [dm6] | A | G | 1.602e-6 | 0.251 |
UTR_3_PRIME
pgant2 |
||
2L | 12289242 | 2L_12289242_SNP [dm3] 2L_12289242_SNP [dm6] | T | C | 1.740e-6 | 0.251 |
UTR_5_PRIME
aret INTRON aret |
TF binding site
mE1_TFBS_HSA mE1_TFBS_inv
|
|
3R | 1206780 | 3R_1206780_DEL [dm3] 3R_5381058_DEL [dm6] | AA | A | 1.837e-6 | 0.251 |
INTRON
kkv |
||
2L | 12279048 | 2L_12279048_SNP [dm3] 2L_12279048_SNP [dm6] | G | A | 2.025e-6 | 0.251 |
INTRON
aret |
||
X | 4472554 | X_4472554_INS [dm3] X_4578521_INS [dm6] | C | CA | 2.196e-6 | 0.251 |
INTRON
CR32773 |
TF binding site
BDTNP1_TFBS_da
|
|
3R | 25222382 | 3R_25222382_DEL [dm3] 3R_29396660_DEL [dm6] | AG | A | 2.467e-6 | 0.251 |
INTRON
Ptp99A |
||
3R | 15241503 | 3R_15241503_SNP [dm3] 3R_19415781_SNP [dm6] | T | C | 2.469e-6 | 0.251 |
UTR_5_PRIME
CG31221 |
||
2L | 4819399 | 2L_4819399_DEL [dm3] 2L_4819399_DEL [dm6] | AA | A | 2.472e-6 | 0.251 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_cad
|
|
2L | 13975947 | 2L_13975947_DEL [dm3] 2L_13975947_DEL [dm6] | ATAA | A | 2.669e-6 | 0.251 |
INTRON
NimC1 |
||
2L | 5074858 | 2L_5074858_DEL [dm3] 2L_5074858_DEL [dm6] | AA | A | 2.872e-6 | 0.251 |
INTRON
pgant5 |
||
3R | 25222390 | 3R_25222390_SNP [dm3] 3R_29396668_SNP [dm6] | A | T | 2.904e-6 | 0.251 |
INTRON
Ptp99A |
||
3R | 25222387 | 3R_25222387_INS [dm3] 3R_29396665_INS [dm6] | GC | AGATA | 3.092e-6 | 0.251 |
INTRON
Ptp99A |
||
3R | 26709662 | 3R_26709662_SNP [dm3] 3R_30883940_SNP [dm6] | A | G | 3.157e-6 | 0.251 |
UPSTREAM
CG15547 INTRON Sap-r |
TF binding site
mE1_TFBS_cad
|
|
2L | 21050757 | 2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6] | TTATAGAT | T | 3.212e-6 | 0.251 |
INTRON
CG42238 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_cad
|
|
3R | 25222291 | 3R_25222291_SNP [dm3] 3R_29396569_SNP [dm6] | C | A | 3.562e-6 | 0.252 |
INTRON
Ptp99A |
||
3R | 25222391 | 3R_25222391_SNP [dm3] 3R_29396669_SNP [dm6] | C | G | 3.617e-6 | 0.252 |
INTRON
Ptp99A |
||
X | 16519235 | X_16519235_DEL [dm3] X_16625202_DEL [dm6] | AA | A | 3.679e-6 | 0.252 |
UTR_3_PRIME
Rok INTRON Rok |
||
2R | 19616121 | 2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6] | GG | A | 3.890e-6 | 0.252 |
INTRON
Sesn |
||
2L | 12209977 | 2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6] | G | C | 3.901e-6 | 0.252 |
UTR_3_PRIME
CG31759 INTRON aret |
||
2L | 18587275 | 2L_18587275_SNP [dm3] 2L_18587275_SNP [dm6] | T | G | 4.221e-6 | 0.264 |
INTRON
Pde11 |
||
2L | 4679653 | 2L_4679653_SNP [dm3] 2L_4679653_SNP [dm6] | G | A | 4.477e-6 | 0.271 |
INTERGENIC
|
||
2L | 12552342 | 2L_12552342_SNP [dm3] 2L_12552342_SNP [dm6] | T | A | 4.621e-6 | 0.271 |
INTERGENIC
|
||
3R | 20661039 | 3R_20661039_SNP [dm3] 3R_24835317_SNP [dm6] | T | C | 4.832e-6 | 0.271 |
UPSTREAM
CR45216 & 1 other INTRON sosie |
TF binding site
BDTNP1_TFBS_dl
|
|
2L | 8854866 | 2L_8854866_SNP [dm3] 2L_8854866_SNP [dm6] | A | C | 5.270e-6 | 0.271 |
INTERGENIC
|
||
2L | 19004441 | 2L_19004441_SNP [dm3] 2L_19004441_SNP [dm6] | T | A | 5.353e-6 | 0.271 |
INTRON
CG31793 |
TF binding site
mE1_TFBS_chinmo
|
|
2R | 16707647 | 2R_16707647_DEL [dm3] 2R_20820142_DEL [dm6] | ACGCGCACCATA... | A | 5.477e-6 | 0.271 |
INTERGENIC
|
||
2L | 8854896 | 2L_8854896_INS [dm3] 2L_8854896_INS [dm6] | A | CCCCAACTTAT... | 5.585e-6 | 0.271 |
INTERGENIC
|
||
3R | 26710866 | 3R_26710866_SNP [dm3] 3R_30885144_SNP [dm6] | G | C | 5.856e-6 | 0.271 |
SYNONYMOUS_CODING
Sap-r |
TF binding site
mE1_TFBS_cad mE1_TFBS_sens
|
|
2L | 4679586 | 2L_4679586_SNP [dm3] 2L_4679586_SNP [dm6] | G | C | 6.013e-6 | 0.271 |
INTERGENIC
|
||
3R | 13270270 | 3R_13270270_DEL [dm3] 3R_17444548_DEL [dm6] | TGT | T | 6.154e-6 | 0.271 |
INTRON
CG5873 |
||
2L | 21944642 | 2L_21944642_INS [dm3] 2L_21944642_INS [dm6] | C | CTTAAGCT | 6.181e-6 | 0.271 |
INTERGENIC
|
||
2L | 21944643 | 2L_21944643_DEL [dm3] 2L_21944643_DEL [dm6] | AC | A | 6.181e-6 | 0.271 |
INTERGENIC
|
||
2L | 4820028 | 2L_4820028_DEL [dm3] 2L_4820028_DEL [dm6] | CATTGTC | C | 6.283e-6 | 0.271 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
|
|
2L | 4059197 | 2L_4059197_SNP [dm3] 2L_4059197_SNP [dm6] | C | T | 6.368e-6 | 0.271 |
INTRON
ed |
||
2L | 12210043 | 2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6] | AATTCG | A | 7.079e-6 | 0.295 |
UTR_3_PRIME
CG31759 DOWNSTREAM CG31759 INTRON aret |
||
2L | 4679336 | 2L_4679336_SNP [dm3] 2L_4679336_SNP [dm6] | A | G | 8.175e-6 | 0.318 |
INTERGENIC
|
||
2R | 16762359 | 2R_16762359_SNP [dm3] 2R_20874854_SNP [dm6] | C | T | 8.186e-6 | 0.318 |
NON_SYNONYMOUS_CODING
Ipk1 INTRON Ipk1 |
||
2R | 1329977 | 2R_1329977_SNP [dm3] 2R_5442472_SNP [dm6] | T | A | 8.443e-6 | 0.318 |
INTRON
laccase2 |
transposable element
FlyBase
|
|
2L | 19806150 | 2L_19806150_SNP [dm3] 2L_19806150_SNP [dm6] | A | G | 8.517e-6 | 0.318 |
INTRON
sick |
||
3L | 975783 | 3L_975783_SNP [dm3] 3L_975783_SNP [dm6] | A | G | 8.548e-6 | 0.318 |
INTRON
Glut1 |
||
3R | 22741710 | 3R_22741710_SNP [dm3] 3R_26915988_SNP [dm6] | C | T | 8.804e-6 | 0.318 |
INTRON
sda |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
|
|
3R | 19750711 | 3R_19750711_INS [dm3] 3R_23924989_INS [dm6] | C | CC | 9.270e-6 | 0.318 |
DOWNSTREAM
CG31141 INTRON Ndc1 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 7898797 | 2L_7898797_INS [dm3] 2L_7898797_INS [dm6] | T | TAT | 9.428e-6 | 0.318 |
INTRON
Snoo |
TF binding site
mE1_TFBS_cad
|
|
2L | 21933009 | 2L_21933009_DEL [dm3] 2L_21933009_DEL [dm6] | CC | C | 9.512e-6 | 0.318 |
INTERGENIC
|
TF binding site
mE1_TFBS_chinmo
|
|
2L | 12552355 | 2L_12552355_SNP [dm3] 2L_12552355_SNP [dm6] | T | C | 9.709e-6 | 0.318 |
INTERGENIC
|
||
2R | 17809045 | 2R_17809045_SNP [dm3] 2R_21921540_SNP [dm6] | G | A | 9.709e-6 | 0.318 |
UTR_5_PRIME
Fili |
TF binding site
mE1_TFBS_inv
|
|
2R | 17998499 | 2R_17998499_SNP [dm3] 2R_22110994_SNP [dm6] | C | G | 1.008e-5 | 0.318 |
INTRON
Vrp1 |
TF binding site
mE1_TFBS_cad
|
|
3R | 9629705 | 3R_9629705_DEL [dm3] 3R_13803983_DEL [dm6] | TAAATCTACCATTATCACTA... | T | 1.032e-5 | 0.318 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
3L | 12107226 | 3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6] | T | A | 1.038e-5 | 0.318 |
INTERGENIC
|
||
2L | 20960756 | 2L_20960756_INS [dm3] 2L_20960756_INS [dm6] | C | CAGTGC | 1.093e-5 | 0.318 |
INTERGENIC
|
||
2L | 3217742 | 2L_3217742_DEL [dm3] 2L_3217742_DEL [dm6] | TA | T | 1.108e-5 | 0.318 |
INTERGENIC
|
||
2L | 650344 | 2L_650344_DEL [dm3] 2L_650344_DEL [dm6] | TT | T | 1.113e-5 | 0.318 |
INTRON
ds |
||
3R | 26709682 | 3R_26709682_SNP [dm3] 3R_30883960_SNP [dm6] | T | A | 1.118e-5 | 0.318 |
UPSTREAM
CG15547 INTRON Sap-r |
TF binding site
mE1_TFBS_cad
|
|
2R | 19358438 | 2R_19358438_INS [dm3] 2R_23470915_INS [dm6] | T | TAGAT | 1.125e-5 | 0.318 |
INTRON
CG43795 & 1 other |
||
3R | 24741850 | 3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6] | G | T | 1.127e-5 | 0.318 |
INTRON
Doa |
||
2R | 8268259 | 2R_8268259_DEL [dm3] 2R_12380754_DEL [dm6] | ATC | A | 1.128e-5 | 0.318 |
UPSTREAM
CG13155 INTERGENIC |
||
3L | 14675527 | 3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6] | ATTTTTCA | A | 1.144e-5 | 0.318 |
INTRON
ome |
||
2L | 19011676 | 2L_19011676_INS [dm3] 2L_19011676_INS [dm6] | T | TT | 1.153e-5 | 0.318 |
UPSTREAM
CR45292 DOWNSTREAM robl37BC INTERGENIC |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo
|
|
2L | 12552322 | 2L_12552322_SNP [dm3] 2L_12552322_SNP [dm6] | C | T | 1.184e-5 | 0.322 |
INTERGENIC
|
||
3R | 25979460 | 3R_25979460_INS [dm3] 3R_30153738_INS [dm6] | A | AATTGATGGTA... | 1.216e-5 | 0.322 |
DOWNSTREAM
CG15529 INTRON CG11498 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
|
|
2L | 1711319 | 2L_1711319_SNP [dm3] 2L_1711319_SNP [dm6] | T | A | 1.226e-5 | 0.322 |
UTR_3_PRIME
mRpL48 & 1 other UPSTREAM CG17660 DOWNSTREAM frtz |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_cad
|
|
2L | 12552395 | 2L_12552395_SNP [dm3] 2L_12552395_SNP [dm6] | G | C | 1.260e-5 | 0.322 |
INTERGENIC
|
||
3R | 13807712 | 3R_13807712_INS [dm3] 3R_17981990_INS [dm6] | C | CC | 1.285e-5 | 0.322 |
INTRON
cpo |
||
2L | 12552359 | 2L_12552359_SNP [dm3] 2L_12552359_SNP [dm6] | G | A | 1.287e-5 | 0.322 |
INTERGENIC
|
||
2R | 18284264 | 2R_18284264_SNP [dm3] 2R_22396759_SNP [dm6] | A | G | 1.309e-5 | 0.322 |
INTRON
babos |
TF binding site
BDTNP1_TFBS_dl
|
|
2L | 12309657 | 2L_12309657_SNP [dm3] 2L_12309657_SNP [dm6] | G | T | 1.330e-5 | 0.322 |
INTRON
aret |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
3L | 21861112 | 3L_21861112_SNP [dm3] 3L_21868012_SNP [dm6] | A | C | 1.360e-5 | 0.322 |
INTRON
mub |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
X | 12624080 | X_12624080_DEL [dm3] X_12730047_DEL [dm6] | AA | A | 1.366e-5 | 0.322 |
INTRON
Smr & 1 other |
TF binding site
mE1_TFBS_GATAe
|
|
3L | 11652581 | 3L_11652581_SNP [dm3] 3L_11659481_SNP [dm6] | G | A | 1.389e-5 | 0.322 |
INTRON
CG32085 |
||
2L | 2625695 | 2L_2625695_SNP [dm3] 2L_2625695_SNP [dm6] | C | A | 1.405e-5 | 0.322 |
EXON
CR45705 |
||
2R | 1127765 | 2R_1127765_DEL [dm3] 2R_5240260_DEL [dm6] | TGTTTCGATCTAATGGGGAG... | T | 1.408e-5 | 0.322 |
INTRON
Nipped-A |
TF binding site
BDTNP1_TFBS_dl
|
|
X | 7293956 | X_7293956_DEL [dm3] X_7399923_DEL [dm6] | TTTT | G | 1.447e-5 | 0.322 |
INTRON
CG1677 & 1 other |
TF binding site
BDTNP1_TFBS_prd mE1_TFBS_sbb
|
|
2L | 21291021 | 2L_21291021_SNP [dm3] 2L_21291021_SNP [dm6] | T | C | 1.466e-5 | 0.322 |
SYNONYMOUS_CODING
Gr39a UPSTREAM Gr39a INTRON Mio |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
2R | 18122805 | 2R_18122805_SNP [dm3] 2R_22235300_SNP [dm6] | G | T | 1.500e-5 | 0.322 |
DOWNSTREAM
CR44755 INTERGENIC |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 13108034 | 2L_13108034_SNP [dm3] 2L_13108034_SNP [dm6] | T | A | 1.511e-5 | 0.322 |
SYNONYMOUS_CODING
CG5142 |
TF binding site
mE1_TFBS_chinmo
|
|
3L | 3867643 | 3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6] | G | C | 1.518e-5 | 0.322 |
INTERGENIC
|
||
3L | 12336855 | 3L_12336855_SNP [dm3] 3L_12343755_SNP [dm6] | A | G | 1.520e-5 | 0.322 |
INTRON
CrzR |
||
2L | 3217451 | 2L_3217451_SNP [dm3] 2L_3217451_SNP [dm6] | G | C | 1.555e-5 | 0.322 |
INTERGENIC
|
||
2R | 13163427 | 2R_13163427_SNP [dm3] 2R_17275922_SNP [dm6] | G | A | 1.585e-5 | 0.322 |
SYNONYMOUS_CODING
mbl |
TF binding site
mE1_TFBS_HSA
|
|
3R | 12605734 | 3R_12605734_SNP [dm3] 3R_16780012_SNP [dm6] | T | C | 1.621e-5 | 0.322 |
INTERGENIC
|
||
X | 7997438 | X_7997438_DEL [dm3] X_8103405_DEL [dm6] | CTTCGCC | C | 1.658e-5 | 0.322 |
UTR_3_PRIME
Gclc |
||
2L | 2443910 | 2L_2443910_DEL [dm3] 2L_2443910_DEL [dm6] | TATAAATGCAAGTGA... | T | 1.669e-5 | 0.322 |
INTRON
dpp |
enhancer
FlyBase
regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA |
|
3R | 15489993 | 3R_15489993_SNP [dm3] 3R_19664271_SNP [dm6] | C | A | 1.671e-5 | 0.322 |
UPSTREAM
CG7432 DOWNSTREAM ort INTERGENIC |
||
2L | 6779679 | 2L_6779679_INS [dm3] 2L_6779679_INS [dm6] | C | TCG | 1.700e-5 | 0.322 |
INTRON
nrv1 |
||
2L | 12289447 | 2L_12289447_SNP [dm3] 2L_12289447_SNP [dm6] | T | G | 1.754e-5 | 0.322 |
INTRON
aret |
||
2L | 21935017 | 2L_21935017_SNP [dm3] 2L_21935017_SNP [dm6] | A | C | 1.754e-5 | 0.322 |
INTERGENIC
|
||
3R | 27235324 | 3R_27235324_DEL [dm3] 3R_31409602_DEL [dm6] | TAAACGTATTT... | T | 1.793e-5 | 0.322 |
INTRON
Gprk2 |
||
X | 16679364 | X_16679364_DEL [dm3] X_16785331_DEL [dm6] | CGGATGTTTCTGAACGCAAA... | C | 1.920e-5 | 0.322 |
UTR_3_PRIME
CG9609 DOWNSTREAM mRpL22 |
||
2L | 16877705 | 2L_16877705_SNP [dm3] 2L_16877705_SNP [dm6] | C | T | 1.923e-5 | 0.322 |
DOWNSTREAM
CG32832 EXON CR31781 |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
3L | 17023818 | 3L_17023818_SNP [dm3] 3L_17030718_SNP [dm6] | G | T | 1.937e-5 | 0.322 |
SYNONYMOUS_CODING
Ilp8 DOWNSTREAM CG7730 |