DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.132e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01208
In_2R_NS	0.02021

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.3914	0.0151
In_2R_NS	6.1328	0.0466

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1999 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16532066	3L_16532066_DEL [dm3] 3L_16538966_DEL [dm6]	CA	C	6.559e^-7	0.292	INTRON CG43373
2R	15248610	2R_15248610_SNP [dm3] 2R_19361105_SNP [dm6]	A	C	6.770e^-7	0.292	SYNONYMOUS_CODING CG11961
2R	15248616	2R_15248616_SNP [dm3] 2R_19361111_SNP [dm6]	T	C	6.770e^-7	0.292	SYNONYMOUS_CODING CG11961
3L	16532158	3L_16532158_SNP [dm3] 3L_16539058_SNP [dm6]	C	G	6.961e^-7	0.292	INTRON CG43373
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	8.863e^-7	0.292	INTRON Myo10A
3R	11018344	3R_11018344_SNP [dm3] 3R_15192622_SNP [dm6]	T	G	1.061e^-6	0.292	SYNONYMOUS_CODING CG6752 UPSTREAM mir-3644
2L	9405390	2L_9405390_SNP [dm3] 2L_9405390_SNP [dm6]	G	A	1.091e^-6	0.292	INTRON Shawl
2R	16304273	2R_16304273_SNP [dm3] 2R_20416768_SNP [dm6]	C	A	3.948e^-6	0.843	INTERGENIC
2L	580962	2L_580962_SNP [dm3] 2L_580962_SNP [dm6]	A	G	4.048e^-6	0.843	INTERGENIC
2L	7958966	2L_7958966_SNP [dm3] 2L_7958966_SNP [dm6]	G	T	4.997e^-6	0.876	INTRON Snoo
3L	16532177	3L_16532177_SNP [dm3] 3L_16539077_SNP [dm6]	C	A	5.153e^-6	0.876	INTRON CG43373
2R	12680355	2R_12680355_SNP [dm3] 2R_16792850_SNP [dm6]	T	A	5.793e^-6	0.876	DOWNSTREAM CG15615 & 1 other INTRON CG15919
2R	10178671	2R_10178671_SNP [dm3] 2R_14291166_SNP [dm6]	T	C	6.579e^-6	0.876	NON_SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	16114803	2R_16114803_SNP [dm3] 2R_20227298_SNP [dm6]	A	G	6.695e^-6	0.876	INTERGENIC
2R	15248685	2R_15248685_SNP [dm3] 2R_19361180_SNP [dm6]	C	G	7.347e^-6	0.876	SYNONYMOUS_CODING CG11961
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	8.149e^-6	0.876	INTRON MESK2
2R	10536054	2R_10536054_SNP [dm3] 2R_14648549_SNP [dm6]	C	G	8.155e^-6	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18104074	3L_18104074_SNP [dm3] 3L_18110974_SNP [dm6]	A	G	8.405e^-6	0.876	SYNONYMOUS_CODING mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19129166	2L_19129166_INS [dm3] 2L_19129166_INS [dm6]	T	TGATTT	8.984e^-6	0.887	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	9.887e^-6	0.895	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12680354	2R_12680354_SNP [dm3] 2R_16792849_SNP [dm6]	C	T	1.206e^-5	0.895	DOWNSTREAM CG15615 & 1 other INTRON CG15919
3R	10807234	3R_10807234_SNP [dm3] 3R_14981512_SNP [dm6]	C	G	1.356e^-5	0.895	INTERGENIC
2R	14753586	2R_14753586_SNP [dm3] 2R_18866081_SNP [dm6]	G	A	1.515e^-5	0.895	SYNONYMOUS_CODING Dpt UPSTREAM CG43071
2L	16303852	2L_16303852_SNP [dm3] 2L_16303852_SNP [dm6]	C	T	1.571e^-5	0.895	SYNONYMOUS_CODING c_2_M UPSTREAM CG5869
2R	6975347	2R_6975347_INS [dm3] 2R_11087842_INS [dm6]	T	TCGTCTAGGTT...	1.627e^-5	0.895	UPSTREAM CG43189 INTRON luna & 1 other	TF binding site mE1_TFBS_Kr
2R	17685083	2R_17685083_DEL [dm3] 2R_21797578_DEL [dm6]	GTC	G	1.699e^-5	0.895	DOWNSTREAM CG34204 & 1 other INTERGENIC
2L	3222769	2L_3222769_SNP [dm3] 2L_3222769_SNP [dm6]	T	A	1.738e^-5	0.895	INTERGENIC
X	9803224	X_9803224_DEL [dm3] X_9909191_DEL [dm6]	ATCTTAAGTA	A	1.788e^-5	0.895	UTR_3_PRIME CG1986 DOWNSTREAM CG1986	insulator Insulator_Class_II.mE01
2R	12786317	2R_12786317_SNP [dm3] 2R_16898812_SNP [dm6]	A	G	1.804e^-5	0.895	SYNONYMOUS_CODING inaC
X	8578764	X_8578764_INS [dm3] X_8684731_INS [dm6]	T	TC	1.816e^-5	0.895	UPSTREAM CG11284 INTRON CG11284
2L	11937868	2L_11937868_SNP [dm3] 2L_11937868_SNP [dm6]	G	A	1.920e^-5	0.895	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
3R	18590013	3R_18590013_SNP [dm3] 3R_22764291_SNP [dm6]	A	C	1.955e^-5	0.895	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14753589	2R_14753589_SNP [dm3] 2R_18866084_SNP [dm6]	C	A	2.067e^-5	0.895	NON_SYNONYMOUS_CODING Dpt UPSTREAM CG43071
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	2.175e^-5	0.895	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	16282719	3L_16282719_SNP [dm3] 3L_16289619_SNP [dm6]	T	G	2.192e^-5	0.895	DOWNSTREAM CG13045 INTERGENIC
2R	17378918	2R_17378918_SNP [dm3] 2R_21491413_SNP [dm6]	T	G	2.211e^-5	0.895	INTRON Fkbp14
2L	533659	2L_533659_SNP [dm3] 2L_533659_SNP [dm6]	T	C	2.242e^-5	0.895	INTRON ush	TF binding site mE1_TFBS_inv
X	5516317	X_5516317_SNP [dm3] X_5622284_SNP [dm6]	G	A	2.273e^-5	0.895	SPLICE_SITE_REGION Mlc-c UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c EXON mir-3645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	18038355	2R_18038355_INS [dm3] 2R_22150850_INS [dm6]	A	ATA	2.293e^-5	0.895	INTRON a
2R	3529348	2R_3529348_SNP [dm3] 2R_7641843_SNP [dm6]	A	G	2.311e^-5	0.895	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2L	11158255	2L_11158255_SNP [dm3] 2L_11158255_SNP [dm6]	G	A	2.376e^-5	0.895	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	2.465e^-5	0.895	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26080981	3R_26080981_SNP [dm3] 3R_30255259_SNP [dm6]	C	A	2.539e^-5	0.895	INTERGENIC
2R	15248383	2R_15248383_SNP [dm3] 2R_19360878_SNP [dm6]	T	C	2.545e^-5	0.895	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7402798	2R_7402798_SNP [dm3] 2R_11515293_SNP [dm6]	A	T	2.705e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19037162	3R_19037162_SNP [dm3] 3R_23211440_SNP [dm6]	G	T	2.748e^-5	0.895	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	7619434	2L_7619434_SNP [dm3] 2L_7619434_SNP [dm6]	C	A	2.868e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17230695	2R_17230695_SNP [dm3] 2R_21343190_SNP [dm6]	C	A	2.886e^-5	0.895	SYNONYMOUS_CODING CG15666
2R	17924105	2R_17924105_SNP [dm3] 2R_22036600_SNP [dm6]	A	C	2.902e^-5	0.895	DOWNSTREAM CG9308 INTRON CG34370
2L	20958231	2L_20958231_SNP [dm3] 2L_20958231_SNP [dm6]	T	A	2.954e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17231213	2R_17231213_SNP [dm3] 2R_21343708_SNP [dm6]	T	A	2.972e^-5	0.895	INTRON CG15666
X	11667828	X_11667828_SNP [dm3] X_11773795_SNP [dm6]	T	A	3.028e^-5	0.895	INTRON dy
2R	14752617	2R_14752617_SNP [dm3] 2R_18865112_SNP [dm6]	T	G	3.072e^-5	0.895	UPSTREAM Dpt DOWNSTREAM CG43070 INTRON CG43071
3L	18115607	3L_18115607_SNP [dm3] 3L_18122507_SNP [dm6]	A	T	3.076e^-5	0.895	UPSTREAM CG42853 INTERGENIC
2R	20128717	2R_20128717_SNP [dm3] 2R_24241194_SNP [dm6]	C	A	3.081e^-5	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15248394	2R_15248394_SNP [dm3] 2R_19360889_SNP [dm6]	T	C	3.082e^-5	0.895	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7231135	3L_7231135_SNP [dm3] 3L_7238035_SNP [dm6]	A	T	3.126e^-5	0.895	NON_SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9886390	3L_9886390_SNP [dm3] 3L_9893290_SNP [dm6]	C	T	3.183e^-5	0.895	UTR_3_PRIME CalpB & 2 others DOWNSTREAM CG14164 & 1 other
2R	18182229	2R_18182229_SNP [dm3] 2R_22294724_SNP [dm6]	T	G	3.196e^-5	0.895	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6340801	2R_6340801_SNP [dm3] 2R_10453296_SNP [dm6]	C	T	3.269e^-5	0.895	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2R	15248382	2R_15248382_SNP [dm3] 2R_19360877_SNP [dm6]	T	C	3.291e^-5	0.895	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16258329	X_16258329_SNP [dm3] X_16364296_SNP [dm6]	T	C	3.305e^-5	0.895	SYNONYMOUS_CODING nonA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12681104	2R_12681104_SNP [dm3] 2R_16793599_SNP [dm6]	C	A	3.306e^-5	0.895	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
3R	10807767	3R_10807767_SNP [dm3] 3R_14982045_SNP [dm6]	G	A	3.307e^-5	0.895	INTERGENIC
3L	1363811	3L_1363811_INS [dm3] 3L_1363811_INS [dm6]	C	CT	3.308e^-5	0.895	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16175836	2R_16175836_SNP [dm3] 2R_20288331_SNP [dm6]	T	G	3.369e^-5	0.895	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
2L	16628423	2L_16628423_SNP [dm3] 2L_16628423_SNP [dm6]	T	C	3.378e^-5	0.895	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	15248486	2R_15248486_SNP [dm3] 2R_19360981_SNP [dm6]	A	C	3.404e^-5	0.895	INTRON CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9803183	X_9803183_SNP [dm3] X_9909150_SNP [dm6]	A	G	3.458e^-5	0.895	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	4074310	3L_4074310_SNP [dm3] 3L_4074310_SNP [dm6]	T	C	3.471e^-5	0.895	UTR_3_PRIME Gad1 UPSTREAM Faa
2R	15248397	2R_15248397_SNP [dm3] 2R_19360892_SNP [dm6]	C	T	3.528e^-5	0.895	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	581295	2L_581295_SNP [dm3] 2L_581295_SNP [dm6]	T	C	3.537e^-5	0.895	INTERGENIC
3L	2292149	3L_2292149_SNP [dm3] 3L_2292149_SNP [dm6]	T	G	3.564e^-5	0.895	INTRON MsR2
2L	7781627	2L_7781627_SNP [dm3] 2L_7781627_SNP [dm6]	G	A	3.633e^-5	0.895	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
X	10681768	X_10681768_SNP [dm3] X_10787735_SNP [dm6]	A	T	3.670e^-5	0.895	UPSTREAM sesB & 1 other DOWNSTREAM Imp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6026096	2L_6026096_SNP [dm3] 2L_6026096_SNP [dm6]	G	A	3.733e^-5	0.895	INTRON CG9109
3R	7125049	3R_7125049_SNP [dm3] 3R_11299327_SNP [dm6]	A	T	3.745e^-5	0.895	INTRON CR31386
2R	16114766	2R_16114766_SNP [dm3] 2R_20227261_SNP [dm6]	G	T	3.814e^-5	0.895	INTERGENIC
3L	15077130	3L_15077130_SNP [dm3] 3L_15084030_SNP [dm6]	T	C	3.816e^-5	0.895	NON_SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad
X	11687956	X_11687956_SNP [dm3] X_11793923_SNP [dm6]	C	A	3.904e^-5	0.895	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
3R	24863791	3R_24863791_SNP [dm3] 3R_29038069_SNP [dm6]	C	A	3.931e^-5	0.895	INTRON Slu7	TF binding site mE1_TFBS_sens
2R	8822651	2R_8822651_SNP [dm3] 2R_12935146_SNP [dm6]	A	C	3.956e^-5	0.895	INTRON CG13322	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	11628555	3L_11628555_SNP [dm3] 3L_11635455_SNP [dm6]	C	T	3.960e^-5	0.895	INTRON CG32091
3L	11390032	3L_11390032_SNP [dm3] 3L_11396932_SNP [dm6]	C	T	4.009e^-5	0.895	UPSTREAM CG44362 INTERGENIC
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	4.168e^-5	0.902	UTR_3_PRIME CG1986
2L	12516588	2L_12516588_SNP [dm3] 2L_12516588_SNP [dm6]	A	G	4.182e^-5	0.902	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12883596	3L_12883596_SNP [dm3] 3L_12890496_SNP [dm6]	C	T	4.265e^-5	0.902	UPSTREAM CR45748 INTRON CG43894
3L	12883597	3L_12883597_SNP [dm3] 3L_12890497_SNP [dm6]	G	A	4.265e^-5	0.902	UPSTREAM CR45748 INTRON CG43894
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	4.315e^-5	0.902	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
3L	5495045	3L_5495045_SNP [dm3] 3L_5501945_SNP [dm6]	G	A	4.620e^-5	0.902	UPSTREAM CR44519 INTERGENIC
2R	1316513	2R_1316513_SNP [dm3] 2R_5429008_SNP [dm6]	G	A	4.728e^-5	0.902	INTRON laccase2	transposable element FlyBase
X	6965031	X_6965031_SNP [dm3] X_7070998_SNP [dm6]	T	C	4.729e^-5	0.902	INTRON CG4607
2R	12085705	2R_12085705_SNP [dm3] 2R_16198200_SNP [dm6]	C	T	4.734e^-5	0.902	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8467604	2R_8467604_SNP [dm3] 2R_12580099_SNP [dm6]	A	T	4.782e^-5	0.902	INTRON Sin3A
2L	901470	2L_901470_SNP [dm3] 2L_901470_SNP [dm6]	T	A	4.786e^-5	0.902	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1710777	3L_1710777_SNP [dm3] 3L_1710777_SNP [dm6]	G	T	4.862e^-5	0.902	INTRON CG7991	TF binding site mE1_TFBS_chinmo
X	19887748	X_19887748_SNP [dm3] X_19993715_SNP [dm6]	A	G	4.972e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9714769	3L_9714769_SNP [dm3] 3L_9721669_SNP [dm6]	T	G	5.113e^-5	0.902	SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13980790	2L_13980790_SNP [dm3] 2L_13980790_SNP [dm6]	T	G	5.134e^-5	0.902	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
2L	9646224	2L_9646224_SNP [dm3] 2L_9646224_SNP [dm6]	T	C	5.189e^-5	0.902	INTRON Apoltp
3R	24938247	3R_24938247_SNP [dm3] 3R_29112525_SNP [dm6]	A	G	5.314e^-5	0.902	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
X	19887739	X_19887739_SNP [dm3] X_19993706_SNP [dm6]	G	A	5.435e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12883585	3L_12883585_SNP [dm3] 3L_12890485_SNP [dm6]	T	A	5.495e^-5	0.902	UPSTREAM CR45748 INTRON CG43894
X	8955803	X_8955803_SNP [dm3] X_9061770_SNP [dm6]	A	T	5.510e^-5	0.902	UPSTREAM CG15365 INTRON CG15365
2L	10347713	2L_10347713_SNP [dm3] 2L_10347713_SNP [dm6]	A	C	5.570e^-5	0.902	DOWNSTREAM CG34367 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14958995	3L_14958995_SNP [dm3] 3L_14965895_SNP [dm6]	T	C	5.571e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
3R	26018588	3R_26018588_SNP [dm3] 3R_30192866_SNP [dm6]	T	A	5.584e^-5	0.902	INTERGENIC
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	5.630e^-5	0.902	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3L	1363163	3L_1363163_SNP [dm3] 3L_1363163_SNP [dm6]	G	A	5.661e^-5	0.902	INTRON Ptp61F
2R	19399431	2R_19399431_SNP [dm3] 2R_23511908_SNP [dm6]	G	T	5.694e^-5	0.902	NON_SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
3R	8701835	3R_8701835_SNP [dm3] 3R_12876113_SNP [dm6]	C	G	5.793e^-5	0.902	INTERGENIC
2L	5876151	2L_5876151_SNP [dm3] 2L_5876151_SNP [dm6]	T	A	6.011e^-5	0.902	INTRON rau
X	20159392	X_20159392_DEL [dm3] X_20288365_DEL [dm6]	ACCTCCAAGAA...	A	6.040e^-5	0.902	INTERGENIC
2L	16628444	2L_16628444_SNP [dm3] 2L_16628444_SNP [dm6]	G	A	6.091e^-5	0.902	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1363173	3L_1363173_SNP [dm3] 3L_1363173_SNP [dm6]	G	A	6.104e^-5	0.902	INTRON Ptp61F
3L	14241992	3L_14241992_SNP [dm3] 3L_14248892_SNP [dm6]	C	T	6.178e^-5	0.902	INTERGENIC
X	15795311	X_15795311_SNP [dm3] X_15901278_SNP [dm6]	C	T	6.221e^-5	0.902	INTRON shi
X	20159376	X_20159376_DEL [dm3] X_20288349_DEL [dm6]	AAAAAGACAAAGG...	A	6.229e^-5	0.902	INTERGENIC
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	6.248e^-5	0.902	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	6.248e^-5	0.902	INTRON CG42668
3L	1673072	3L_1673072_SNP [dm3] 3L_1673072_SNP [dm6]	G	C	6.321e^-5	0.902	UPSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3692526	2L_3692526_SNP [dm3] 2L_3692526_SNP [dm6]	G	T	6.338e^-5	0.902	SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	3692527	2L_3692527_SNP [dm3] 2L_3692527_SNP [dm6]	A	G	6.338e^-5	0.902	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	581667	2L_581667_SNP [dm3] 2L_581667_SNP [dm6]	A	T	6.346e^-5	0.902	INTERGENIC
3L	12472001	3L_12472001_SNP [dm3] 3L_12478901_SNP [dm6]	T	G	6.360e^-5	0.902	INTRON CG10663
2L	1345219	2L_1345219_SNP [dm3] 2L_1345219_SNP [dm6]	T	C	6.367e^-5	0.902	DOWNSTREAM CR45005 & 2 others INTERGENIC
3L	9563360	3L_9563360_SNP [dm3] 3L_9570260_SNP [dm6]	G	A	6.411e^-5	0.902	INTRON CG42673
2R	16793008	2R_16793008_SNP [dm3] 2R_20905503_SNP [dm6]	A	G	6.418e^-5	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18399732	2R_18399732_SNP [dm3] 2R_22512227_SNP [dm6]	A	G	6.497e^-5	0.902	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
3L	15184023	3L_15184023_SNP [dm3] 3L_15190923_SNP [dm6]	A	T	6.501e^-5	0.902	EXON CR44562
2L	10503744	2L_10503744_SNP [dm3] 2L_10503744_SNP [dm6]	A	G	6.632e^-5	0.902	INTRON Myo31DF
2R	1219517	2R_1219517_SNP [dm3] 2R_5332012_SNP [dm6]	T	C	6.674e^-5	0.902	INTERGENIC	transposable element FlyBase
3R	9710682	3R_9710682_SNP [dm3] 3R_13884960_SNP [dm6]	T	C	6.709e^-5	0.902	INTERGENIC
3R	18590007	3R_18590007_SNP [dm3] 3R_22764285_SNP [dm6]	T	C	6.712e^-5	0.902	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10601307	2L_10601307_SNP [dm3] 2L_10601307_SNP [dm6]	T	G	6.733e^-5	0.902	INTRON Trim9
3R	22071938	3R_22071938_SNP [dm3] 3R_26246216_SNP [dm6]	T	G	6.866e^-5	0.902	INTRON CR42745
3L	7231158	3L_7231158_SNP [dm3] 3L_7238058_SNP [dm6]	T	C	6.977e^-5	0.902	SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16166844	3R_16166844_SNP [dm3] 3R_20341122_SNP [dm6]	G	A	6.980e^-5	0.902	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	901405	2L_901405_SNP [dm3] 2L_901405_SNP [dm6]	G	T	6.984e^-5	0.902	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	10601264	2L_10601264_SNP [dm3] 2L_10601264_SNP [dm6]	T	C	7.030e^-5	0.902	INTRON Trim9
2R	14270525	2R_14270525_SNP [dm3] 2R_18383020_SNP [dm6]	G	C	7.121e^-5	0.902	SYNONYMOUS_CODING IM23 UPSTREAM IM1
2L	901487	2L_901487_SNP [dm3] 2L_901487_SNP [dm6]	G	A	7.183e^-5	0.902	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18439537	2R_18439537_SNP [dm3] 2R_22552032_SNP [dm6]	A	T	7.337e^-5	0.902	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	1363177	3L_1363177_SNP [dm3] 3L_1363177_SNP [dm6]	T	A	7.378e^-5	0.902	INTRON Ptp61F
3R	6526720	3R_6526720_SNP [dm3] 3R_10700998_SNP [dm6]	C	G	7.444e^-5	0.902	SPLICE_SITE_REGION pug INTRON pug	TF binding site mE1_TFBS_chinmo
3R	16165961	3R_16165961_SNP [dm3] 3R_20340239_SNP [dm6]	G	A	7.501e^-5	0.902	NON_SYNONYMOUS_CODING Ir92a
3R	24856529	3R_24856529_SNP [dm3] 3R_29030807_SNP [dm6]	A	G	7.526e^-5	0.902	UTR_3_PRIME CG1951 UPSTREAM CR45044 DOWNSTREAM Ssl2
2R	19506180	2R_19506180_SNP [dm3] 2R_23618657_SNP [dm6]	C	T	7.587e^-5	0.902	INTERGENIC
2L	7631175	2L_7631175_SNP [dm3] 2L_7631175_SNP [dm6]	C	A	7.648e^-5	0.902	INTERGENIC
3L	1110145	3L_1110145_SNP [dm3] 3L_1110145_SNP [dm6]	G	A	7.671e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	3104141	X_3104141_SNP [dm3] X_3210108_SNP [dm6]	A	G	7.679e^-5	0.902	INTRON dnc
2L	10169685	2L_10169685_SNP [dm3] 2L_10169685_SNP [dm6]	A	T	7.705e^-5	0.902	INTRON CG44153
3L	6571470	3L_6571470_SNP [dm3] 3L_6578370_SNP [dm6]	G	T	7.706e^-5	0.902	INTRON CG18769 & 1 other
3R	8188542	3R_8188542_SNP [dm3] 3R_12362820_SNP [dm6]	A	G	7.794e^-5	0.902	SYNONYMOUS_CODING CG4115 UPSTREAM snmRNA:419 DOWNSTREAM Tim17a1
3L	8206945	3L_8206945_SNP [dm3] 3L_8213845_SNP [dm6]	G	A	7.876e^-5	0.902	DOWNSTREAM CG8006 INTERGENIC
X	16700589	X_16700589_SNP [dm3] X_16806556_SNP [dm6]	A	G	7.920e^-5	0.902	DOWNSTREAM CG13005 INTRON ppk28 & 1 other
3L	1699420	3L_1699420_SNP [dm3] 3L_1699420_SNP [dm6]	C	T	8.049e^-5	0.902	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	10855888	X_10855888_SNP [dm3] X_10961855_SNP [dm6]	A	T	8.274e^-5	0.902	INTRON Myo10A
2R	3432158	2R_3432158_SNP [dm3] 2R_7544653_SNP [dm6]	C	A	8.342e^-5	0.902	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8891130	3L_8891130_SNP [dm3] 3L_8898030_SNP [dm6]	A	G	8.369e^-5	0.902	SPLICE_SITE_REGION TrpA1 INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15248464	2R_15248464_SNP [dm3] 2R_19360959_SNP [dm6]	T	C	8.493e^-5	0.902	INTRON CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1601351	2R_1601351_SNP [dm3] 2R_5713846_SNP [dm6]	C	T	8.507e^-5	0.902	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13964945	X_13964945_INS [dm3] X_14070912_INS [dm6]	A	AA	8.508e^-5	0.902	DOWNSTREAM tRNA:S474:12Eh INTERGENIC
2R	1219258	2R_1219258_SNP [dm3] 2R_5331753_SNP [dm6]	T	C	8.517e^-5	0.902	INTERGENIC	transposable element FlyBase
2R	15213287	2R_15213287_SNP [dm3] 2R_19325782_SNP [dm6]	C	A	8.670e^-5	0.902	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11667804	X_11667804_SNP [dm3] X_11773771_SNP [dm6]	A	G	8.767e^-5	0.902	INTRON dy
3L	8949981	3L_8949981_SNP [dm3] 3L_8956881_SNP [dm6]	T	C	8.801e^-5	0.902	SPLICE_SITE_DONOR mRpL12 DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5070009	2L_5070009_SNP [dm3] 2L_5070009_SNP [dm6]	C	T	8.840e^-5	0.902	UPSTREAM RpL37A DOWNSTREAM CR45305 INTRON qtc
2R	12242473	2R_12242473_SNP [dm3] 2R_16354968_SNP [dm6]	C	A	8.895e^-5	0.902	INTRON CG30098
2L	15045678	2L_15045678_SNP [dm3] 2L_15045678_SNP [dm6]	T	A	9.024e^-5	0.902	INTRON ck
3L	1363632	3L_1363632_DEL [dm3] 3L_1363632_DEL [dm6]	CC	C	9.110e^-5	0.902	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18598182	3R_18598182_SNP [dm3] 3R_22772460_SNP [dm6]	C	A	9.133e^-5	0.902	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	3442689	2R_3442689_SNP [dm3] 2R_7555184_SNP [dm6]	C	G	9.167e^-5	0.902	SYNONYMOUS_CODING Corin
3R	16166816	3R_16166816_SNP [dm3] 3R_20341094_SNP [dm6]	T	C	9.203e^-5	0.902	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16750644	2R_16750644_SNP [dm3] 2R_20863139_SNP [dm6]	C	A	9.240e^-5	0.902	UPSTREAM CG15227 INTERGENIC
2R	18551006	2R_18551006_SNP [dm3] 2R_22663501_SNP [dm6]	C	G	9.252e^-5	0.902	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2R	15248163	2R_15248163_SNP [dm3] 2R_19360658_SNP [dm6]	T	A	9.379e^-5	0.902	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16114574	2R_16114574_SNP [dm3] 2R_20227069_SNP [dm6]	A	T	9.504e^-5	0.902	INTERGENIC
2R	3527902	2R_3527902_SNP [dm3] 2R_7640397_SNP [dm6]	C	T	9.511e^-5	0.902	SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad
2L	8131557	2L_8131557_SNP [dm3] 2L_8131557_SNP [dm6]	C	T	9.564e^-5	0.902	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	17259715	2L_17259715_SNP [dm3] 2L_17259715_SNP [dm6]	C	A	9.629e^-5	0.902	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3L	6567363	3L_6567363_INS [dm3] 3L_6574263_INS [dm6]	T	TCTCTCTTT	9.673e^-5	0.902	INTRON CG18769 & 1 other
2L	10686264	2L_10686264_SNP [dm3] 2L_10686264_SNP [dm6]	T	C	9.719e^-5	0.902	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	16049394	2R_16049394_SNP [dm3] 2R_20161889_SNP [dm6]	G	T	9.810e^-5	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18399769	2R_18399769_DEL [dm3] 2R_22512264_DEL [dm6]	AGTTCTTTGT	C	9.869e^-5	0.902	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	9803377	X_9803377_SNP [dm3] X_9909344_SNP [dm6]	T	A	9.897e^-5	0.902	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3R	17089495	3R_17089495_SNP [dm3] 3R_21263773_SNP [dm6]	A	G	9.906e^-5	0.902	DOWNSTREAM ETHR INTRON ETHR
3R	16512263	3R_16512263_SNP [dm3] 3R_20686541_SNP [dm6]	A	C	9.911e^-5	0.902	INTERGENIC
3R	24797725	3R_24797725_SNP [dm3] 3R_28972003_SNP [dm6]	T	C	9.931e^-5	0.902	EXON CR45669
3R	16145147	3R_16145147_SNP [dm3] 3R_20319425_SNP [dm6]	G	A	9.960e^-5	0.902	INTRON CG42668
3R	16145260	3R_16145260_SNP [dm3] 3R_20319538_SNP [dm6]	A	C	1.005e^-4	0.902	INTRON CG42668
2L	10288522	2L_10288522_SNP [dm3] 2L_10288522_SNP [dm6]	A	C	1.011e^-4	0.902	INTRON CG5604
2L	7088676	2L_7088676_SNP [dm3] 2L_7088676_SNP [dm6]	T	A	1.018e^-4	0.902	INTERGENIC	transposable element FlyBase
3L	13082467	3L_13082467_SNP [dm3] 3L_13089367_SNP [dm6]	C	T	1.020e^-4	0.902	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1363178	3L_1363178_INS [dm3] 3L_1363178_INS [dm6]	A	ATGGGCACCTAATTACTTTG...	1.024e^-4	0.902	INTRON Ptp61F
X	17276858	X_17276858_SNP [dm3] X_17382825_SNP [dm6]	C	G	1.038e^-4	0.902	INTERGENIC
2R	15248070	2R_15248070_SNP [dm3] 2R_19360565_SNP [dm6]	G	A	1.043e^-4	0.902	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9714826	3L_9714826_SNP [dm3] 3L_9721726_SNP [dm6]	A	G	1.045e^-4	0.902	NON_SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11628450	3L_11628450_INS [dm3] 3L_11635350_INS [dm6]	G	GTTTTAACTTCAG...	1.046e^-4	0.902	INTRON CG32091
3R	25974169	3R_25974169_SNP [dm3] 3R_30148447_SNP [dm6]	G	T	1.056e^-4	0.902	INTRON AdoR
3L	3493299	3L_3493299_SNP [dm3] 3L_3493299_SNP [dm6]	G	A	1.063e^-4	0.902	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8206917	3L_8206917_SNP [dm3] 3L_8213817_SNP [dm6]	G	A	1.069e^-4	0.902	DOWNSTREAM CG8006 INTERGENIC
2L	2859519	2L_2859519_SNP [dm3] 2L_2859519_SNP [dm6]	C	A	1.070e^-4	0.902	INTRON CG2991
3L	5781169	3L_5781169_SNP [dm3] 3L_5788069_SNP [dm6]	C	T	1.078e^-4	0.902	INTERGENIC
3L	6567356	3L_6567356_SNP [dm3] 3L_6574256_SNP [dm6]	T	C	1.082e^-4	0.902	INTRON CG18769 & 1 other
3L	3334573	3L_3334573_SNP [dm3] 3L_3334573_SNP [dm6]	G	A	1.082e^-4	0.902	UTR_5_PRIME CG14969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22859924	3R_22859924_SNP [dm3] 3R_27034202_SNP [dm6]	T	G	1.084e^-4	0.902	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9430908	3L_9430908_SNP [dm3] 3L_9437808_SNP [dm6]	T	G	1.093e^-4	0.902	SYNONYMOUS_CODING MTF-1 DOWNSTREAM Bet3 INTRON MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19793574	2R_19793574_SNP [dm3] 2R_23906051_SNP [dm6]	C	T	1.094e^-4	0.902	DOWNSTREAM CG13562 INTRON Nap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_sens
2L	13757214	2L_13757214_SNP [dm3] 2L_13757214_SNP [dm6]	T	C	1.108e^-4	0.902	DOWNSTREAM CR44846 INTRON TM9SF4
2L	587302	2L_587302_SNP [dm3] 2L_587302_SNP [dm6]	C	T	1.109e^-4	0.902	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5404144	X_5404144_SNP [dm3] X_5510111_SNP [dm6]	C	T	1.110e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11628460	3L_11628460_SNP [dm3] 3L_11635360_SNP [dm6]	T	A	1.133e^-4	0.902	INTRON CG32091
2L	4296683	2L_4296683_SNP [dm3] 2L_4296683_SNP [dm6]	G	T	1.138e^-4	0.902	INTRON tutl
3R	24418101	3R_24418101_SNP [dm3] 3R_28592379_SNP [dm6]	G	A	1.140e^-4	0.902	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	18270183	2R_18270183_SNP [dm3] 2R_22382678_SNP [dm6]	A	T	1.148e^-4	0.902	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11662833	X_11662833_SNP [dm3] X_11768800_SNP [dm6]	A	G	1.161e^-4	0.902	UTR_3_PRIME m DOWNSTREAM dy
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	1.168e^-4	0.902	INTRON fru	TF binding site BDTNP1_TFBS_da
2L	20070325	2L_20070325_SNP [dm3] 2L_20070325_SNP [dm6]	T	C	1.168e^-4	0.902	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	1.175e^-4	0.902	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12770143	3L_12770143_SNP [dm3] 3L_12777043_SNP [dm6]	C	G	1.183e^-4	0.902	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	988963	2L_988963_SNP [dm3] 2L_988963_SNP [dm6]	G	T	1.188e^-4	0.902	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18099195	3L_18099195_SNP [dm3] 3L_18106095_SNP [dm6]	A	T	1.196e^-4	0.902	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6026092	2L_6026092_SNP [dm3] 2L_6026092_SNP [dm6]	A	T	1.198e^-4	0.902	INTRON CG9109
2L	1452534	2L_1452534_SNP [dm3] 2L_1452534_SNP [dm6]	A	T	1.202e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10256595	X_10256595_DEL [dm3] X_10362562_DEL [dm6]	TTCTT	T	1.204e^-4	0.902	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14754322	2R_14754322_INS [dm3] 2R_18866817_INS [dm6]	T	TTGCTTTTTCTT...	1.205e^-4	0.902	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
X	9203759	X_9203759_INS [dm3] X_9309726_INS [dm6]	T	TCGTTTCCCTCCCTGA...	1.210e^-4	0.902	INTERGENIC
3L	8523531	3L_8523531_SNP [dm3] 3L_8530431_SNP [dm6]	T	A	1.216e^-4	0.902	INTRON foi	TF binding site mE1_TFBS_cad
2L	9415607	2L_9415607_SNP [dm3] 2L_9415607_SNP [dm6]	A	G	1.218e^-4	0.902	UPSTREAM Shawl & 1 other INTERGENIC
3R	22813578	3R_22813578_SNP [dm3] 3R_26987856_SNP [dm6]	A	C	1.221e^-4	0.902	UPSTREAM CG31075 INTRON CG31075
3L	11196587	3L_11196587_SNP [dm3] 3L_11203487_SNP [dm6]	C	T	1.222e^-4	0.902	INTRON Plod
X	21280250	X_21280250_SNP [dm3] X_21409223_SNP [dm6]	T	C	1.229e^-4	0.902	DOWNSTREAM CR45003 INTERGENIC
3L	16282567	3L_16282567_SNP [dm3] 3L_16289467_SNP [dm6]	A	T	1.240e^-4	0.902	DOWNSTREAM CG13045 INTERGENIC	transposable element FlyBase
3L	14959473	3L_14959473_SNP [dm3] 3L_14966373_SNP [dm6]	A	T	1.245e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	17002092	2R_17002092_SNP [dm3] 2R_21114587_SNP [dm6]	G	A	1.249e^-4	0.902	INTRON ktub
3R	22813708	3R_22813708_SNP [dm3] 3R_26987986_SNP [dm6]	T	C	1.258e^-4	0.902	UPSTREAM CG31075 INTRON CG31075
2R	16793031	2R_16793031_SNP [dm3] 2R_20905526_SNP [dm6]	C	T	1.265e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14754449	2R_14754449_SNP [dm3] 2R_18866944_SNP [dm6]	G	T	1.274e^-4	0.902	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	16572904	2L_16572904_SNP [dm3] 2L_16572904_SNP [dm6]	C	T	1.278e^-4	0.902	INTRON CG42389
2L	848341	2L_848341_SNP [dm3] 2L_848341_SNP [dm6]	C	A	1.278e^-4	0.902	INTRON drongo	TF binding site mE1_TFBS_sens
2R	17924704	2R_17924704_SNP [dm3] 2R_22037199_SNP [dm6]	A	C	1.282e^-4	0.902	INTRON CG34370
2L	5876194	2L_5876194_SNP [dm3] 2L_5876194_SNP [dm6]	A	T	1.302e^-4	0.902	INTRON rau
2L	10344117	2L_10344117_SNP [dm3] 2L_10344117_SNP [dm6]	C	A	1.305e^-4	0.902	UTR_3_PRIME Sps2 UPSTREAM CG5022	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20017836	2L_20017836_SNP [dm3] 2L_20017836_SNP [dm6]	C	A	1.307e^-4	0.902	UPSTREAM CG43861 INTERGENIC
2L	14449740	2L_14449740_SNP [dm3] 2L_14449740_SNP [dm6]	T	A	1.323e^-4	0.902	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	17924709	2R_17924709_SNP [dm3] 2R_22037204_SNP [dm6]	T	A	1.324e^-4	0.902	INTRON CG34370
2R	18439539	2R_18439539_SNP [dm3] 2R_22552034_SNP [dm6]	C	T	1.332e^-4	0.902	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	4615031	3L_4615031_SNP [dm3] 3L_4615031_SNP [dm6]	G	C	1.332e^-4	0.902	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	2744793	3L_2744793_SNP [dm3] 3L_2744793_SNP [dm6]	C	T	1.335e^-4	0.902	INTRON Mrtf
3L	1363862	3L_1363862_SNP [dm3] 3L_1363862_SNP [dm6]	G	C	1.336e^-4	0.902	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
2R	18550983	2R_18550983_SNP [dm3] 2R_22663478_SNP [dm6]	A	G	1.341e^-4	0.902	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	15304430	2L_15304430_SNP [dm3] 2L_15304430_SNP [dm6]	T	C	1.344e^-4	0.902	INTERGENIC
3L	19563618	3L_19563618_SNP [dm3] 3L_19570518_SNP [dm6]	A	T	1.344e^-4	0.902	INTRON Shal	TF binding site mE1_TFBS_cad
3L	6681685	3L_6681685_SNP [dm3] 3L_6688585_SNP [dm6]	T	C	1.345e^-4	0.902	DOWNSTREAM SP1173 INTERGENIC
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	1.363e^-4	0.902	SYNONYMOUS_CODING slpr
2L	15841306	2L_15841306_SNP [dm3] 2L_15841306_SNP [dm6]	G	T	1.365e^-4	0.902	EXON CR45694
2L	848353	2L_848353_SNP [dm3] 2L_848353_SNP [dm6]	T	A	1.371e^-4	0.902	INTRON drongo	TF binding site mE1_TFBS_sens
2L	1294745	2L_1294745_SNP [dm3] 2L_1294745_SNP [dm6]	G	T	1.375e^-4	0.902	UTR_3_PRIME robo3 DOWNSTREAM robo3
3L	7106567	3L_7106567_SNP [dm3] 3L_7113467_SNP [dm6]	G	A	1.384e^-4	0.902	INTRON form3
3L	8804227	3L_8804227_SNP [dm3] 3L_8811127_SNP [dm6]	G	A	1.386e^-4	0.902	NON_SYNONYMOUS_CODING CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3572309	2L_3572309_SNP [dm3] 2L_3572309_SNP [dm6]	C	T	1.392e^-4	0.902	INTERGENIC
X	12355444	X_12355444_SNP [dm3] X_12461411_SNP [dm6]	C	T	1.402e^-4	0.902	INTRON Rab40
X	16765410	X_16765410_SNP [dm3] X_16871377_SNP [dm6]	C	T	1.402e^-4	0.902	INTRON CG13003
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	1.407e^-4	0.902	INTRON CG42668
3R	10807334	3R_10807334_DEL [dm3] 3R_14981612_DEL [dm6]	AA	A	1.412e^-4	0.902	INTERGENIC
3R	26018559	3R_26018559_SNP [dm3] 3R_30192837_SNP [dm6]	C	T	1.415e^-4	0.902	INTERGENIC
3R	20014008	3R_20014008_SNP [dm3] 3R_24188286_SNP [dm6]	A	G	1.427e^-4	0.902	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2R	16114572	2R_16114572_SNP [dm3] 2R_20227067_SNP [dm6]	G	T	1.428e^-4	0.902	INTERGENIC
2R	17924701	2R_17924701_SNP [dm3] 2R_22037196_SNP [dm6]	A	G	1.432e^-4	0.902	INTRON CG34370
2R	16114768	2R_16114768_SNP [dm3] 2R_20227263_SNP [dm6]	G	A	1.434e^-4	0.902	INTERGENIC
3L	2351752	3L_2351752_SNP [dm3] 3L_2351752_SNP [dm6]	A	G	1.435e^-4	0.902	INTERGENIC
2L	7088772	2L_7088772_SNP [dm3] 2L_7088772_SNP [dm6]	A	T	1.446e^-4	0.902	INTERGENIC	transposable element FlyBase
X	14614898	X_14614898_SNP [dm3] X_14720865_SNP [dm6]	T	G	1.449e^-4	0.902	INTRON NetB
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	1.455e^-4	0.902	INTRON CanA-14F
2L	1452686	2L_1452686_SNP [dm3] 2L_1452686_SNP [dm6]	G	A	1.457e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8467613	2R_8467613_SNP [dm3] 2R_12580108_SNP [dm6]	T	C	1.459e^-4	0.902	SPLICE_SITE_REGION Sin3A INTRON Sin3A
2R	16013041	2R_16013041_SNP [dm3] 2R_20125536_SNP [dm6]	A	G	1.459e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7088875	2L_7088875_SNP [dm3] 2L_7088875_SNP [dm6]	A	T	1.465e^-4	0.902	INTERGENIC
2L	8895446	2L_8895446_SNP [dm3] 2L_8895446_SNP [dm6]	A	G	1.467e^-4	0.902	INTERGENIC
2R	11064095	2R_11064095_SNP [dm3] 2R_15176590_SNP [dm6]	T	C	1.468e^-4	0.902	INTRON igl
3R	6526815	3R_6526815_SNP [dm3] 3R_10701093_SNP [dm6]	C	T	1.469e^-4	0.902	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_chinmo
2R	16013051	2R_16013051_SNP [dm3] 2R_20125546_SNP [dm6]	C	A	1.470e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14270070	2R_14270070_SNP [dm3] 2R_18382565_SNP [dm6]	T	G	1.472e^-4	0.902	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	19618799	2R_19618799_SNP [dm3] 2R_23731276_SNP [dm6]	G	T	1.478e^-4	0.902	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	19775294	3R_19775294_SNP [dm3] 3R_23949572_SNP [dm6]	G	T	1.479e^-4	0.902	INTERGENIC
3L	11650121	3L_11650121_SNP [dm3] 3L_11657021_SNP [dm6]	T	G	1.484e^-4	0.902	DOWNSTREAM mir-274 INTRON CG32085
2R	14751660	2R_14751660_SNP [dm3] 2R_18864155_SNP [dm6]	T	C	1.486e^-4	0.902	NON_SYNONYMOUS_CODING CG43070 DOWNSTREAM CG43069 & 1 other INTRON CG43070
3L	13663710	3L_13663710_SNP [dm3] 3L_13670610_SNP [dm6]	G	C	1.495e^-4	0.902	INTRON bru-3
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	1.497e^-4	0.902	INTRON Mob2
2L	8548036	2L_8548036_SNP [dm3] 2L_8548036_SNP [dm6]	T	C	1.516e^-4	0.902	INTRON Sema-1a
X	20028096	X_20028096_DEL [dm3] X_20134063_DEL [dm6]	CTGA	C	1.517e^-4	0.902	INTRON CG15322
2R	6027906	2R_6027906_SNP [dm3] 2R_10140401_SNP [dm6]	T	C	1.520e^-4	0.902	SYNONYMOUS_CODING Or46a UPSTREAM Or46a EXON CR43467
3R	22808398	3R_22808398_SNP [dm3] 3R_26982676_SNP [dm6]	C	T	1.527e^-4	0.902	INTRON CG14253
2L	10405275	2L_10405275_SNP [dm3] 2L_10405275_SNP [dm6]	T	A	1.529e^-4	0.902	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4184462	2R_4184462_SNP [dm3] 2R_8296957_SNP [dm6]	T	A	1.537e^-4	0.902	INTERGENIC
2L	5455445	2L_5455445_SNP [dm3] 2L_5455445_SNP [dm6]	G	T	1.555e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17522253	3R_17522253_SNP [dm3] 3R_21696531_SNP [dm6]	T	C	1.557e^-4	0.902	INTRON CG31176
2L	10723776	2L_10723776_SNP [dm3] 2L_10723776_SNP [dm6]	A	T	1.570e^-4	0.902	UPSTREAM CG6431 INTERGENIC
2L	5455367	2L_5455367_SNP [dm3] 2L_5455367_SNP [dm6]	A	C	1.580e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11495081	2R_11495081_SNP [dm3] 2R_15607576_SNP [dm6]	G	A	1.600e^-4	0.902	INTERGENIC
2L	20374085	2L_20374085_SNP [dm3] 2L_20374085_SNP [dm6]	C	T	1.600e^-4	0.902	UPSTREAM Ugt37a1 INTERGENIC
2L	20369899	2L_20369899_SNP [dm3] 2L_20369899_SNP [dm6]	T	A	1.604e^-4	0.902	INTERGENIC
2R	15248031	2R_15248031_SNP [dm3] 2R_19360526_SNP [dm6]	C	T	1.607e^-4	0.902	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA
3L	18147224	3L_18147224_SNP [dm3] 3L_18154124_SNP [dm6]	G	C	1.609e^-4	0.902	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26021430	3R_26021430_SNP [dm3] 3R_30195708_SNP [dm6]	C	T	1.616e^-4	0.902	DOWNSTREAM CG9743 INTRON CG15531
3R	3619793	3R_3619793_SNP [dm3] 3R_7794071_SNP [dm6]	T	A	1.619e^-4	0.902	UTR_5_PRIME CG2641 DOWNSTREAM CG10086	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15841805	2R_15841805_SNP [dm3] 2R_19954300_SNP [dm6]	C	A	1.619e^-4	0.902	NON_SYNONYMOUS_CODING CG44622
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	1.626e^-4	0.902	INTRON CR43372
X	2148087	X_2148087_SNP [dm3] X_2254054_SNP [dm6]	G	A	1.642e^-4	0.902	NON_SYNONYMOUS_CODING CG3091 DOWNSTREAM CG3078	TF binding site mE1_TFBS_sens
X	12906563	X_12906563_SNP [dm3] X_13012530_SNP [dm6]	A	G	1.648e^-4	0.902	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14751659	2R_14751659_SNP [dm3] 2R_18864154_SNP [dm6]	T	C	1.652e^-4	0.902	NON_SYNONYMOUS_CODING CG43070 DOWNSTREAM CG43069 & 1 other INTRON CG43070
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	1.655e^-4	0.902	INTRON Ten-a
2R	12776061	2R_12776061_SNP [dm3] 2R_16888556_SNP [dm6]	G	A	1.674e^-4	0.902	INTRON CG8910
2R	15213519	2R_15213519_SNP [dm3] 2R_19326014_SNP [dm6]	G	T	1.674e^-4	0.902	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3L	15488772	3L_15488772_SNP [dm3] 3L_15495672_SNP [dm6]	G	A	1.679e^-4	0.902	UPSTREAM CG12355 & 1 other INTERGENIC
2L	5769649	2L_5769649_SNP [dm3] 2L_5769649_SNP [dm6]	T	G	1.681e^-4	0.902	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3R	16165980	3R_16165980_SNP [dm3] 3R_20340258_SNP [dm6]	T	C	1.688e^-4	0.902	SYNONYMOUS_CODING Ir92a
3R	26024576	3R_26024576_SNP [dm3] 3R_30198854_SNP [dm6]	T	G	1.688e^-4	0.902	NON_SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17486441	2R_17486441_SNP [dm3] 2R_21598936_SNP [dm6]	A	G	1.690e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16772051	X_16772051_SNP [dm3] X_16878018_SNP [dm6]	G	A	1.695e^-4	0.902	INTERGENIC
2R	17476886	2R_17476886_SNP [dm3] 2R_21589381_SNP [dm6]	G	T	1.698e^-4	0.902	UPSTREAM CG33225 INTERGENIC
3R	16145865	3R_16145865_SNP [dm3] 3R_20320143_SNP [dm6]	C	T	1.701e^-4	0.902	INTRON CG42668
2R	1219298	2R_1219298_SNP [dm3] 2R_5331793_SNP [dm6]	A	T	1.705e^-4	0.902	INTERGENIC	transposable element FlyBase
2R	18270184	2R_18270184_SNP [dm3] 2R_22382679_SNP [dm6]	A	C	1.733e^-4	0.902	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9714814	3L_9714814_SNP [dm3] 3L_9721714_SNP [dm6]	C	A	1.745e^-4	0.902	NON_SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7829535	2L_7829535_SNP [dm3] 2L_7829535_SNP [dm6]	T	C	1.757e^-4	0.902	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17358439	3R_17358439_SNP [dm3] 3R_21532717_SNP [dm6]	T	C	1.758e^-4	0.902	EXON CR43372
3L	634628	3L_634628_SNP [dm3] 3L_634628_SNP [dm6]	A	T	1.762e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8895476	2L_8895476_SNP [dm3] 2L_8895476_SNP [dm6]	A	C	1.763e^-4	0.902	INTERGENIC
3L	12886294	3L_12886294_SNP [dm3] 3L_12893194_SNP [dm6]	G	T	1.768e^-4	0.902	INTRON CG14118
2L	14893989	2L_14893989_SNP [dm3] 2L_14893989_SNP [dm6]	C	T	1.771e^-4	0.902	INTERGENIC
3L	8315903	3L_8315903_SNP [dm3] 3L_8322803_SNP [dm6]	C	T	1.783e^-4	0.902	DOWNSTREAM CG13670 INTERGENIC
3L	14962405	3L_14962405_INS [dm3] 3L_14969305_INS [dm6]	G	GCA	1.786e^-4	0.902	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16114620	2R_16114620_SNP [dm3] 2R_20227115_SNP [dm6]	G	T	1.787e^-4	0.902	INTERGENIC
2L	7829662	2L_7829662_SNP [dm3] 2L_7829662_SNP [dm6]	C	T	1.800e^-4	0.902	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1470108	2L_1470108_SNP [dm3] 2L_1470108_SNP [dm6]	C	G	1.803e^-4	0.902	INTERGENIC
2L	2624252	2L_2624252_SNP [dm3] 2L_2624252_SNP [dm6]	G	T	1.803e^-4	0.902	INTERGENIC
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	1.836e^-4	0.902	INTRON Rab40
2L	7088882	2L_7088882_SNP [dm3] 2L_7088882_SNP [dm6]	C	A	1.842e^-4	0.902	INTERGENIC
2L	8894907	2L_8894907_SNP [dm3] 2L_8894907_SNP [dm6]	C	T	1.844e^-4	0.902	INTERGENIC
X	10907920	X_10907920_SNP [dm3] X_11013887_SNP [dm6]	A	G	1.845e^-4	0.902	INTRON CG42339
2L	12713845	2L_12713845_SNP [dm3] 2L_12713845_SNP [dm6]	G	C	1.845e^-4	0.902	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
3R	25858284	3R_25858284_SNP [dm3] 3R_30032562_SNP [dm6]	A	C	1.850e^-4	0.902	INTRON Axn	TF binding site mE1_TFBS_cad
2R	16704190	2R_16704190_SNP [dm3] 2R_20816685_SNP [dm6]	A	G	1.851e^-4	0.902	INTERGENIC
3L	6681698	3L_6681698_INS [dm3] 3L_6688598_INS [dm6]	T	TT	1.856e^-4	0.902	DOWNSTREAM SP1173 INTERGENIC
3R	23865305	3R_23865305_SNP [dm3] 3R_28039583_SNP [dm6]	C	G	1.858e^-4	0.902	INTRON CG34362
3L	11512236	3L_11512236_SNP [dm3] 3L_11519136_SNP [dm6]	A	G	1.865e^-4	0.902	SYNONYMOUS_CODING Fuca DOWNSTREAM CG7512
2R	14755006	2R_14755006_SNP [dm3] 2R_18867501_SNP [dm6]	C	T	1.868e^-4	0.902	NON_SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
3R	22811374	3R_22811374_SNP [dm3] 3R_26985652_SNP [dm6]	C	T	1.878e^-4	0.902	UTR_3_PRIME CG14253 & 1 other	TF binding site mE1_TFBS_cad
2R	12316631	2R_12316631_SNP [dm3] 2R_16429126_SNP [dm6]	A	T	1.879e^-4	0.902	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2L	10020901	2L_10020901_SNP [dm3] 2L_10020901_SNP [dm6]	C	T	1.887e^-4	0.902	INTERGENIC
3R	24938695	3R_24938695_SNP [dm3] 3R_29112973_SNP [dm6]	A	C	1.893e^-4	0.902	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15249092	2R_15249092_SNP [dm3] 2R_19361587_SNP [dm6]	A	G	1.894e^-4	0.902	SYNONYMOUS_CODING CG11961
2L	16615307	2L_16615307_SNP [dm3] 2L_16615307_SNP [dm6]	T	A	1.918e^-4	0.902	INTRON CG42389
X	16937006	X_16937006_SNP [dm3] X_17042973_SNP [dm6]	C	T	1.923e^-4	0.902	INTRON CG45002
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	1.924e^-4	0.902	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
2L	5455378	2L_5455378_SNP [dm3] 2L_5455378_SNP [dm6]	A	G	1.927e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20342578	X_20342578_SNP [dm3] X_20471551_SNP [dm6]	G	A	1.937e^-4	0.902	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2R	8447104	2R_8447104_SNP [dm3] 2R_12559599_SNP [dm6]	C	T	1.937e^-4	0.902	SYNONYMOUS_CODING fra
2R	10324237	2R_10324237_SNP [dm3] 2R_14436732_SNP [dm6]	G	A	1.952e^-4	0.902	INTRON Oaz
3L	16282795	3L_16282795_SNP [dm3] 3L_16289695_SNP [dm6]	C	A	1.952e^-4	0.902	DOWNSTREAM CG13045 INTERGENIC
2L	5455370	2L_5455370_SNP [dm3] 2L_5455370_SNP [dm6]	A	T	1.963e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22812941	3R_22812941_SNP [dm3] 3R_26987219_SNP [dm6]	G	T	1.966e^-4	0.902	INTRON CG31075	TF binding site mE1_TFBS_cad
2L	7957859	2L_7957859_SNP [dm3] 2L_7957859_SNP [dm6]	A	T	1.966e^-4	0.902	INTRON Snoo
X	2984321	X_2984321_SNP [dm3] X_3090288_SNP [dm6]	T	C	1.970e^-4	0.902	INTRON kirre
2R	19499584	2R_19499584_SNP [dm3] 2R_23612061_SNP [dm6]	T	G	1.972e^-4	0.902	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4825199	2L_4825199_SNP [dm3] 2L_4825199_SNP [dm6]	C	G	1.973e^-4	0.902	INTRON CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17570209	3R_17570209_SNP [dm3] 3R_21744487_SNP [dm6]	T	G	1.975e^-4	0.902	UPSTREAM CG31343 DOWNSTREAM CG5849 INTERGENIC
2L	18651667	2L_18651667_SNP [dm3] 2L_18651667_SNP [dm6]	G	A	1.982e^-4	0.902	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6021736	3L_6021736_SNP [dm3] 3L_6028636_SNP [dm6]	A	G	1.982e^-4	0.902	INTERGENIC
3R	11294803	3R_11294803_SNP [dm3] 3R_15469081_SNP [dm6]	C	A	1.996e^-4	0.902	INTRON AdamTS-A
3L	7056794	3L_7056794_SNP [dm3] 3L_7063694_SNP [dm6]	G	A	1.997e^-4	0.902	INTRON CG8641
2L	5119017	2L_5119017_SNP [dm3] 2L_5119017_SNP [dm6]	T	A	2.011e^-4	0.902	INTRON Msp300
3L	9397247	3L_9397247_SNP [dm3] 3L_9404147_SNP [dm6]	G	T	2.015e^-4	0.902	UPSTREAM Cpr67B INTERGENIC
2L	7686150	2L_7686150_SNP [dm3] 2L_7686150_SNP [dm6]	G	C	2.022e^-4	0.902	NON_SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
2R	12680909	2R_12680909_SNP [dm3] 2R_16793404_SNP [dm6]	G	A	2.026e^-4	0.902	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
2L	10686250	2L_10686250_MNP [dm3] 2L_10686250_MNP [dm6]	ACT	TAC	2.030e^-4	0.902	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
3L	17039729	3L_17039729_SNP [dm3] 3L_17046629_SNP [dm6]	C	T	2.031e^-4	0.902	INTRON TpnC73F
3L	2399650	3L_2399650_SNP [dm3] 3L_2399650_SNP [dm6]	C	T	2.031e^-4	0.902	UPSTREAM CG45186 INTRON CG45186
X	14614886	X_14614886_SNP [dm3] X_14720853_SNP [dm6]	G	A	2.035e^-4	0.902	INTRON NetB
3R	19132181	3R_19132181_SNP [dm3] 3R_23306459_SNP [dm6]	A	G	2.035e^-4	0.902	INTRON pnt
3L	9430935	3L_9430935_SNP [dm3] 3L_9437835_SNP [dm6]	A	G	2.035e^-4	0.902	SYNONYMOUS_CODING MTF-1 DOWNSTREAM Bet3 INTRON MTF-1	TF binding site mE1_TFBS_cad
3R	22188440	3R_22188440_INS [dm3] 3R_26362718_INS [dm6]	C	CA	2.039e^-4	0.902	DOWNSTREAM CG33970 INTERGENIC
3R	26019493	3R_26019493_SNP [dm3] 3R_30193771_SNP [dm6]	A	G	2.051e^-4	0.902	INTERGENIC
X	3145196	X_3145196_SNP [dm3] X_3251163_SNP [dm6]	A	G	2.075e^-4	0.902	DOWNSTREAM Sgs4 INTRON dnc
3R	21193955	3R_21193955_SNP [dm3] 3R_25368233_SNP [dm6]	G	T	2.076e^-4	0.902	INTRON Fur1
2L	7719935	2L_7719935_SNP [dm3] 2L_7719935_SNP [dm6]	G	A	2.077e^-4	0.902	SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
2R	6637902	2R_6637902_SNP [dm3] 2R_10750397_SNP [dm6]	G	T	2.080e^-4	0.902	INTRON CG33144
3R	18589869	3R_18589869_SNP [dm3] 3R_22764147_SNP [dm6]	C	T	2.090e^-4	0.902	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
3R	18600053	3R_18600053_SNP [dm3] 3R_22774331_SNP [dm6]	A	T	2.093e^-4	0.902	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	13853670	3R_13853670_SNP [dm3] 3R_18027948_SNP [dm6]	T	A	2.106e^-4	0.902	INTERGENIC
3L	1343830	3L_1343830_SNP [dm3] 3L_1343830_SNP [dm6]	A	T	2.110e^-4	0.902	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	16165997	3R_16165997_SNP [dm3] 3R_20340275_SNP [dm6]	G	A	2.112e^-4	0.902	NON_SYNONYMOUS_CODING Ir92a
X	3902732	X_3902732_SNP [dm3] X_4008699_SNP [dm6]	A	G	2.115e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6746754	2R_6746754_SNP [dm3] 2R_10859249_SNP [dm6]	A	G	2.129e^-4	0.902	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3L	2620595	3L_2620595_SNP [dm3] 3L_2620595_SNP [dm6]	T	C	2.134e^-4	0.902	INTRON Pxn
2R	15248133	2R_15248133_SNP [dm3] 2R_19360628_SNP [dm6]	C	T	2.134e^-4	0.902	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8449097	2L_8449097_SNP [dm3] 2L_8449097_SNP [dm6]	C	T	2.138e^-4	0.902	SPLICE_SITE_REGION U26 SYNONYMOUS_CODING U26 DOWNSTREAM fu12
3R	6526821	3R_6526821_SNP [dm3] 3R_10701099_SNP [dm6]	G	A	2.140e^-4	0.902	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_chinmo
3R	19070239	3R_19070239_SNP [dm3] 3R_23244517_SNP [dm6]	A	G	2.148e^-4	0.902	INTRON CG4467
2L	3346723	2L_3346723_SNP [dm3] 2L_3346723_SNP [dm6]	G	A	2.162e^-4	0.902	INTRON E23
2R	14753297	2R_14753297_SNP [dm3] 2R_18865792_SNP [dm6]	A	C	2.166e^-4	0.902	UTR_5_PRIME Dpt UPSTREAM CG43071	regulatory region REDfly_CRMs
2L	833734	2L_833734_SNP [dm3] 2L_833734_SNP [dm6]	G	T	2.167e^-4	0.902	UTR_3_PRIME drongo DOWNSTREAM dock
2R	13271621	2R_13271621_SNP [dm3] 2R_17384116_SNP [dm6]	T	C	2.174e^-4	0.902	INTERGENIC
2L	18652226	2L_18652226_SNP [dm3] 2L_18652226_SNP [dm6]	T	G	2.175e^-4	0.902	SPLICE_SITE_REGION Cyp310a1 INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25455931	3R_25455931_SNP [dm3] 3R_29630209_SNP [dm6]	C	T	2.175e^-4	0.902	DOWNSTREAM Dop1R2 INTERGENIC
2L	11651680	2L_11651680_SNP [dm3] 2L_11651680_SNP [dm6]	T	A	2.178e^-4	0.902	NON_SYNONYMOUS_CODING CG12307 UPSTREAM CG4983
2L	3635567	2L_3635567_SNP [dm3] 2L_3635567_SNP [dm6]	A	G	2.186e^-4	0.902	INTRON for
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	2.188e^-4	0.902	INTRON Rab40
2L	534985	2L_534985_SNP [dm3] 2L_534985_SNP [dm6]	G	A	2.191e^-4	0.902	INTRON ush
3L	9397259	3L_9397259_SNP [dm3] 3L_9404159_SNP [dm6]	A	G	2.205e^-4	0.902	UPSTREAM Cpr67B INTERGENIC
2L	21025359	2L_21025359_SNP [dm3] 2L_21025359_SNP [dm6]	G	T	2.210e^-4	0.902	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5267657	2L_5267657_SNP [dm3] 2L_5267657_SNP [dm6]	C	T	2.211e^-4	0.902	NON_SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
2R	12633118	2R_12633118_SNP [dm3] 2R_16745613_SNP [dm6]	G	A	2.214e^-4	0.902	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2R	16758801	2R_16758801_SNP [dm3] 2R_20871296_SNP [dm6]	T	C	2.218e^-4	0.902	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11383845	2L_11383845_SNP [dm3] 2L_11383845_SNP [dm6]	G	A	2.222e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
2R	7334229	2R_7334229_SNP [dm3] 2R_11446724_SNP [dm6]	T	A	2.223e^-4	0.902	INTRON qvr
2L	7088704	2L_7088704_SNP [dm3] 2L_7088704_SNP [dm6]	C	G	2.224e^-4	0.902	INTERGENIC	transposable element FlyBase
X	16773060	X_16773060_SNP [dm3] X_16879027_SNP [dm6]	G	A	2.230e^-4	0.902	INTERGENIC
2R	19706310	2R_19706310_SNP [dm3] 2R_23818787_SNP [dm6]	T	C	2.230e^-4	0.902	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	16441782	3R_16441782_INS [dm3] 3R_20616060_INS [dm6]	T	TTTTAGTTTT	2.232e^-4	0.902	INTRON CG15923
X	15966871	X_15966871_SNP [dm3] X_16072838_SNP [dm6]	G	A	2.233e^-4	0.902	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18520773	2R_18520773_SNP [dm3] 2R_22633268_SNP [dm6]	T	G	2.237e^-4	0.902	UTR_3_PRIME CG33143 DOWNSTREAM CG17807
2L	11666187	2L_11666187_SNP [dm3] 2L_11666187_SNP [dm6]	G	T	2.237e^-4	0.902	DOWNSTREAM CR44481 INTERGENIC
3R	24938469	3R_24938469_SNP [dm3] 3R_29112747_SNP [dm6]	A	T	2.241e^-4	0.902	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	24938561	3R_24938561_SNP [dm3] 3R_29112839_SNP [dm6]	C	T	2.241e^-4	0.902	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10323801	2R_10323801_SNP [dm3] 2R_14436296_SNP [dm6]	C	G	2.243e^-4	0.902	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	14928945	3L_14928945_SNP [dm3] 3L_14935845_SNP [dm6]	C	T	2.247e^-4	0.902	INTRON DCX-EMAP
3R	25455944	3R_25455944_SNP [dm3] 3R_29630222_SNP [dm6]	G	T	2.252e^-4	0.902	DOWNSTREAM Dop1R2 INTERGENIC
2L	7856556	2L_7856556_SNP [dm3] 2L_7856556_SNP [dm6]	G	A	2.265e^-4	0.902	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11420223	2R_11420223_SNP [dm3] 2R_15532718_SNP [dm6]	A	G	2.273e^-4	0.902	UPSTREAM Khc-73 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19648432	3R_19648432_SNP [dm3] 3R_23822710_SNP [dm6]	C	A	2.307e^-4	0.902	INTRON CG34355
3L	12287697	3L_12287697_SNP [dm3] 3L_12294597_SNP [dm6]	C	G	2.313e^-4	0.902	INTRON CG4328
2L	10344275	2L_10344275_SNP [dm3] 2L_10344275_SNP [dm6]	T	C	2.318e^-4	0.902	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9228688	X_9228688_SNP [dm3] X_9334655_SNP [dm6]	G	A	2.319e^-4	0.902	INTRON CG34449	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4825367	2L_4825367_SNP [dm3] 2L_4825367_SNP [dm6]	G	A	2.326e^-4	0.902	INTRON CG15628
2L	4825370	2L_4825370_MNP [dm3] 2L_4825370_MNP [dm6]	CTC	TCA	2.326e^-4	0.902	INTRON CG15628
3L	7920461	3L_7920461_SNP [dm3] 3L_7927361_SNP [dm6]	A	G	2.329e^-4	0.902	INTRON syd
3R	16144918	3R_16144918_SNP [dm3] 3R_20319196_SNP [dm6]	C	T	2.336e^-4	0.902	INTRON CG42668
3L	9962577	3L_9962577_SNP [dm3] 3L_9969477_SNP [dm6]	G	A	2.336e^-4	0.902	INTRON Nc	TF binding site mE1_TFBS_cad
2L	1455727	2L_1455727_SNP [dm3] 2L_1455727_SNP [dm6]	T	G	2.346e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7046694	3L_7046694_SNP [dm3] 3L_7053594_SNP [dm6]	G	A	2.346e^-4	0.902	DOWNSTREAM Mp INTERGENIC
X	6691938	X_6691938_SNP [dm3] X_6797905_SNP [dm6]	G	A	2.368e^-4	0.902	INTRON C3G
3R	26023960	3R_26023960_SNP [dm3] 3R_30198238_SNP [dm6]	T	G	2.377e^-4	0.902	INTRON CG9743
2L	4743427	2L_4743427_SNP [dm3] 2L_4743427_SNP [dm6]	C	T	2.387e^-4	0.902	INTRON CG15630
3L	14795228	3L_14795228_SNP [dm3] 3L_14802128_SNP [dm6]	G	C	2.398e^-4	0.902	UTR_5_PRIME NHP2 DOWNSTREAM gnu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12725735	2L_12725735_SNP [dm3] 2L_12725735_SNP [dm6]	C	T	2.399e^-4	0.902	SYNONYMOUS_CODING MRP
3L	1363638	3L_1363638_SNP [dm3] 3L_1363638_SNP [dm6]	A	T	2.402e^-4	0.902	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15642854	3R_15642854_SNP [dm3] 3R_19817132_SNP [dm6]	A	T	2.402e^-4	0.902	INTRON bnl	TF binding site BDTNP1_TFBS_twi
2L	1362261	2L_1362261_SNP [dm3] 2L_1362261_SNP [dm6]	A	C	2.403e^-4	0.902	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17924838	2R_17924838_SNP [dm3] 2R_22037333_SNP [dm6]	A	G	2.408e^-4	0.902	INTRON CG34370
2L	15175615	2L_15175615_SNP [dm3] 2L_15175615_SNP [dm6]	A	C	2.409e^-4	0.902	INTRON CG4168
2R	11806383	2R_11806383_SNP [dm3] 2R_15918878_SNP [dm6]	A	T	2.417e^-4	0.902	INTRON sli	TF binding site mE1_TFBS_HSA
X	6515761	X_6515761_DEL [dm3] X_6621728_DEL [dm6]	TTTTTT	T	2.421e^-4	0.902	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12680486	2R_12680486_SNP [dm3] 2R_16792981_SNP [dm6]	G	A	2.426e^-4	0.902	SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
2R	13753506	2R_13753506_SNP [dm3] 2R_17866001_SNP [dm6]	A	T	2.429e^-4	0.902	UPSTREAM thr DOWNSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	11659145	3L_11659145_SNP [dm3] 3L_11666045_SNP [dm6]	G	A	2.430e^-4	0.902	INTRON CG32085
2L	8623138	2L_8623138_SNP [dm3] 2L_8623138_SNP [dm6]	A	T	2.432e^-4	0.902	INTRON Sema-1a
3L	1649801	3L_1649801_SNP [dm3] 3L_1649801_SNP [dm6]	T	C	2.434e^-4	0.902	INTRON CG13920
3R	26604264	3R_26604264_SNP [dm3] 3R_30778542_SNP [dm6]	A	T	2.439e^-4	0.902	INTRON zfh1
2R	13753490	2R_13753490_SNP [dm3] 2R_17865985_SNP [dm6]	C	T	2.442e^-4	0.902	UPSTREAM thr DOWNSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	16615338	2L_16615338_SNP [dm3] 2L_16615338_SNP [dm6]	A	T	2.443e^-4	0.902	INTRON CG42389
3R	11013047	3R_11013047_SNP [dm3] 3R_15187325_SNP [dm6]	C	G	2.451e^-4	0.902	INTRON Gyc88E
2R	19195343	2R_19195343_SNP [dm3] 2R_23307820_SNP [dm6]	C	A	2.452e^-4	0.902	DOWNSTREAM Prosbeta5R1 INTERGENIC
3L	2418233	3L_2418233_SNP [dm3] 3L_2418233_SNP [dm6]	A	G	2.460e^-4	0.902	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7660346	2L_7660346_SNP [dm3] 2L_7660346_SNP [dm6]	A	T	2.464e^-4	0.902	UPSTREAM Slob INTRON Slob
X	13964375	X_13964375_SNP [dm3] X_14070342_SNP [dm6]	C	T	2.464e^-4	0.902	UPSTREAM tRNA:S474:12Eh INTERGENIC
3R	10994235	3R_10994235_SNP [dm3] 3R_15168513_SNP [dm6]	G	A	2.467e^-4	0.902	INTRON Gyc88E
3L	9962582	3L_9962582_SNP [dm3] 3L_9969482_SNP [dm6]	G	A	2.469e^-4	0.902	INTRON Nc	TF binding site mE1_TFBS_cad
2R	14755401	2R_14755401_SNP [dm3] 2R_18867896_SNP [dm6]	A	G	2.473e^-4	0.902	UTR_3_PRIME CG43109 DOWNSTREAM DptB
X	16765402	X_16765402_SNP [dm3] X_16871369_SNP [dm6]	A	G	2.475e^-4	0.902	INTRON CG13003
2L	19100085	2L_19100085_SNP [dm3] 2L_19100085_SNP [dm6]	G	A	2.475e^-4	0.902	INTRON Lim3
X	15249529	X_15249529_INS [dm3] X_15355496_INS [dm6]	T	TGGCAGCTTT	2.476e^-4	0.902	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
X	13966999	X_13966999_SNP [dm3] X_14072966_SNP [dm6]	A	C	2.479e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	11804889	2R_11804889_INS [dm3] 2R_15917384_INS [dm6]	T	TT	2.499e^-4	0.902	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	11041727	2R_11041727_SNP [dm3] 2R_15154222_SNP [dm6]	A	T	2.509e^-4	0.902	INTERGENIC
2L	2630063	2L_2630063_SNP [dm3] 2L_2630063_SNP [dm6]	A	G	2.536e^-4	0.902	INTERGENIC
3L	1343826	3L_1343826_SNP [dm3] 3L_1343826_SNP [dm6]	T	G	2.543e^-4	0.902	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	1343827	3L_1343827_INS [dm3] 3L_1343827_INS [dm6]	G	GCTC	2.543e^-4	0.902	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	8804232	3L_8804232_SNP [dm3] 3L_8811132_SNP [dm6]	A	T	2.545e^-4	0.902	SYNONYMOUS_CODING CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14618712	X_14618712_SNP [dm3] X_14724679_SNP [dm6]	G	T	2.553e^-4	0.902	INTRON NetB
2L	9619002	2L_9619002_SNP [dm3] 2L_9619002_SNP [dm6]	T	G	2.567e^-4	0.902	INTRON GlcAT-S
2L	9619005	2L_9619005_DEL [dm3] 2L_9619005_DEL [dm6]	GT	A	2.567e^-4	0.902	INTRON GlcAT-S
2R	7451848	2R_7451848_SNP [dm3] 2R_11564343_SNP [dm6]	C	G	2.568e^-4	0.902	INTERGENIC
3L	9397264	3L_9397264_SNP [dm3] 3L_9404164_SNP [dm6]	T	G	2.569e^-4	0.902	UPSTREAM Cpr67B INTERGENIC
2R	9686589	2R_9686589_SNP [dm3] 2R_13799084_SNP [dm6]	A	G	2.579e^-4	0.902	INTRON Cpr50Cb
X	15966694	X_15966694_SNP [dm3] X_16072661_SNP [dm6]	C	A	2.591e^-4	0.902	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3R	15749944	3R_15749944_SNP [dm3] 3R_19924222_SNP [dm6]	A	G	2.601e^-4	0.902	INTRON CG4462
3L	9827806	3L_9827806_SNP [dm3] 3L_9834706_SNP [dm6]	T	A	2.616e^-4	0.902	UTR_3_PRIME I-2 DOWNSTREAM CG43897
2L	2643137	2L_2643137_SNP [dm3] 2L_2643137_SNP [dm6]	T	C	2.621e^-4	0.902	INTERGENIC
2L	7242356	2L_7242356_SNP [dm3] 2L_7242356_SNP [dm6]	G	A	2.640e^-4	0.902	INTRON Ndae1
2L	10506935	2L_10506935_SNP [dm3] 2L_10506935_SNP [dm6]	A	C	2.645e^-4	0.902	UPSTREAM CG6094 & 1 other DOWNSTREAM CG7384 EXON CR44224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2417964	3L_2417964_SNP [dm3] 3L_2417964_SNP [dm6]	G	C	2.653e^-4	0.902	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19706335	2R_19706335_DEL [dm3] 2R_23818812_DEL [dm6]	TATG	GCC	2.662e^-4	0.902	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14020261	3R_14020261_SNP [dm3] 3R_18194539_SNP [dm6]	C	T	2.662e^-4	0.902	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
2R	6073743	2R_6073743_SNP [dm3] 2R_10186238_SNP [dm6]	T	C	2.663e^-4	0.902	INTRON KCNQ
2L	4205094	2L_4205094_SNP [dm3] 2L_4205094_SNP [dm6]	A	G	2.664e^-4	0.902	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18182166	2R_18182166_SNP [dm3] 2R_22294661_SNP [dm6]	A	T	2.672e^-4	0.902	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22822232	3R_22822232_SNP [dm3] 3R_26996510_SNP [dm6]	T	A	2.684e^-4	0.902	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
2R	15249140	2R_15249140_SNP [dm3] 2R_19361635_SNP [dm6]	T	C	2.686e^-4	0.902	SYNONYMOUS_CODING CG11961
2L	7686140	2L_7686140_SNP [dm3] 2L_7686140_SNP [dm6]	G	A	2.699e^-4	0.902	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
2L	7686143	2L_7686143_SNP [dm3] 2L_7686143_SNP [dm6]	C	T	2.699e^-4	0.902	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
X	20819266	X_20819266_SNP [dm3] X_20948239_SNP [dm6]	C	G	2.710e^-4	0.902	INTERGENIC
2R	17545626	2R_17545626_SNP [dm3] 2R_21658121_SNP [dm6]	A	T	2.712e^-4	0.902	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTRON CG10320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11013201	3R_11013201_SNP [dm3] 3R_15187479_SNP [dm6]	C	T	2.724e^-4	0.902	SYNONYMOUS_CODING Gyc88E
3L	10751318	3L_10751318_SNP [dm3] 3L_10758218_SNP [dm6]	C	A	2.731e^-4	0.902	INTERGENIC
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	2.733e^-4	0.902	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	9646922	2L_9646922_SNP [dm3] 2L_9646922_SNP [dm6]	A	C	2.738e^-4	0.902	INTRON Apoltp
2R	6483413	2R_6483413_INS [dm3] 2R_10595908_INS [dm6]	G	GATTTG	2.740e^-4	0.902	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	5365756	2R_5365756_SNP [dm3] 2R_9478251_SNP [dm6]	A	C	2.744e^-4	0.902	UTR_3_PRIME Camta DOWNSTREAM Camta
3L	6111740	3L_6111740_SNP [dm3] 3L_6118640_SNP [dm6]	T	G	2.755e^-4	0.902	INTRON Ets65A
3L	14958938	3L_14958938_SNP [dm3] 3L_14965838_SNP [dm6]	T	G	2.759e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	10338656	3L_10338656_SNP [dm3] 3L_10345556_SNP [dm6]	C	T	2.762e^-4	0.902	INTERGENIC
X	14614896	X_14614896_SNP [dm3] X_14720863_SNP [dm6]	C	T	2.763e^-4	0.902	INTRON NetB
3R	20405065	3R_20405065_SNP [dm3] 3R_24579343_SNP [dm6]	G	A	2.768e^-4	0.902	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15521389	2L_15521389_SNP [dm3] 2L_15521389_SNP [dm6]	A	G	2.769e^-4	0.902	UPSTREAM CR43761 INTERGENIC
3R	17358544	3R_17358544_SNP [dm3] 3R_21532822_SNP [dm6]	T	A	2.774e^-4	0.902	INTRON CR43372
2R	6318533	2R_6318533_SNP [dm3] 2R_10431028_SNP [dm6]	A	G	2.780e^-4	0.902	NON_SYNONYMOUS_CODING RanBPM UTR_5_PRIME RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18147161	3L_18147161_SNP [dm3] 3L_18154061_SNP [dm6]	A	G	2.783e^-4	0.902	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19285729	3L_19285729_SNP [dm3] 3L_19292629_SNP [dm6]	G	A	2.788e^-4	0.902	UTR_5_PRIME Gbs-76A UPSTREAM Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	7089108	2L_7089108_SNP [dm3] 2L_7089108_SNP [dm6]	A	T	2.795e^-4	0.902	INTERGENIC
3L	9303851	3L_9303851_DEL [dm3] 3L_9310751_DEL [dm6]	TT	T	2.796e^-4	0.902	INTERGENIC
3L	3943542	3L_3943542_SNP [dm3] 3L_3943542_SNP [dm6]	G	A	2.797e^-4	0.902	UTR_5_PRIME CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	15213274	2R_15213274_SNP [dm3] 2R_19325769_SNP [dm6]	C	T	2.799e^-4	0.902	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15425524	3R_15425524_SNP [dm3] 3R_19599802_SNP [dm6]	C	T	2.806e^-4	0.902	UPSTREAM Cpr92A & 1 other INTERGENIC
2L	4296635	2L_4296635_SNP [dm3] 2L_4296635_SNP [dm6]	G	A	2.808e^-4	0.902	INTRON tutl
2R	17688669	2R_17688669_SNP [dm3] 2R_21801164_SNP [dm6]	G	A	2.813e^-4	0.902	UPSTREAM CG4386 INTERGENIC
3R	18600224	3R_18600224_SNP [dm3] 3R_22774502_SNP [dm6]	G	A	2.814e^-4	0.902	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17865612	2R_17865612_SNP [dm3] 2R_21978107_SNP [dm6]	G	A	2.814e^-4	0.902	DOWNSTREAM Gr58b & 1 other INTERGENIC
2R	17545556	2R_17545556_SNP [dm3] 2R_21658051_SNP [dm6]	G	A	2.819e^-4	0.902	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545559	2R_17545559_SNP [dm3] 2R_21658054_SNP [dm6]	G	C	2.819e^-4	0.902	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545568	2R_17545568_SNP [dm3] 2R_21658063_SNP [dm6]	A	G	2.819e^-4	0.902	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545583	2R_17545583_SNP [dm3] 2R_21658078_SNP [dm6]	C	T	2.819e^-4	0.902	UTR_5_PRIME CG10320 UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17545754	2R_17545754_SNP [dm3] 2R_21658249_SNP [dm6]	C	A	2.819e^-4	0.902	UTR_5_PRIME CG10320 UPSTREAM CG10320 DOWNSTREAM CG10082 & 1 other INTRON CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14270076	2R_14270076_SNP [dm3] 2R_18382571_SNP [dm6]	A	T	2.831e^-4	0.902	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	2418229	3L_2418229_SNP [dm3] 3L_2418229_SNP [dm6]	T	A	2.831e^-4	0.902	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10394480	2L_10394480_SNP [dm3] 2L_10394480_SNP [dm6]	A	C	2.846e^-4	0.902	SYNONYMOUS_CODING Mdh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	2.847e^-4	0.902	INTRON Rab40
2R	15249364	2R_15249364_SNP [dm3] 2R_19361859_SNP [dm6]	C	G	2.849e^-4	0.902	SYNONYMOUS_CODING CG11961
2L	5492606	2L_5492606_SNP [dm3] 2L_5492606_SNP [dm6]	T	G	2.853e^-4	0.902	INTERGENIC
X	14441417	X_14441417_SNP [dm3] X_14547384_SNP [dm6]	A	C	2.859e^-4	0.902	INTERGENIC
3R	13984641	3R_13984641_SNP [dm3] 3R_18158919_SNP [dm6]	A	G	2.861e^-4	0.902	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2R	3529181	2R_3529181_SNP [dm3] 2R_7641676_SNP [dm6]	C	A	2.865e^-4	0.902	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2R	18182284	2R_18182284_SNP [dm3] 2R_22294779_SNP [dm6]	C	T	2.872e^-4	0.902	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
3L	12239779	3L_12239779_SNP [dm3] 3L_12246679_SNP [dm6]	G	T	2.874e^-4	0.902	UPSTREAM CR43991 INTRON app
2L	1343257	2L_1343257_SNP [dm3] 2L_1343257_SNP [dm6]	G	A	2.880e^-4	0.902	DOWNSTREAM CG33922 INTERGENIC
3L	2399649	3L_2399649_SNP [dm3] 3L_2399649_SNP [dm6]	C	T	2.884e^-4	0.902	UPSTREAM CG45186 INTRON CG45186
2L	7944847	2L_7944847_SNP [dm3] 2L_7944847_SNP [dm6]	T	C	2.894e^-4	0.902	INTRON Snoo
3L	8319604	3L_8319604_SNP [dm3] 3L_8326504_SNP [dm6]	G	T	2.899e^-4	0.902	INTRON CG34461
3L	3668688	3L_3668688_SNP [dm3] 3L_3668688_SNP [dm6]	G	C	2.909e^-4	0.902	INTERGENIC
X	5617943	X_5617943_INS [dm3] X_5723910_INS [dm6]	A	AA	2.930e^-4	0.902	UPSTREAM CG32758 INTRON CG32758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9801291	2R_9801291_SNP [dm3] 2R_13913786_SNP [dm6]	G	T	2.930e^-4	0.902	INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2687537	2L_2687537_INS [dm3] 2L_2687537_INS [dm6]	A	ATATACA	2.934e^-4	0.902	INTRON CG31690
3R	17034157	3R_17034157_SNP [dm3] 3R_21208435_SNP [dm6]	C	G	2.937e^-4	0.902	UPSTREAM SNF4Agamma INTRON SNF4Agamma
2R	13223077	2R_13223077_SNP [dm3] 2R_17335572_SNP [dm6]	G	T	2.937e^-4	0.902	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3692413	2L_3692413_SNP [dm3] 2L_3692413_SNP [dm6]	C	T	2.945e^-4	0.902	DOWNSTREAM CG3513 & 2 others INTRON CG16704
2L	3692417	2L_3692417_SNP [dm3] 2L_3692417_SNP [dm6]	T	G	2.945e^-4	0.902	DOWNSTREAM CG3513 & 2 others INTRON CG16704
2R	17385212	2R_17385212_SNP [dm3] 2R_21497707_SNP [dm6]	C	T	2.946e^-4	0.902	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	20819265	X_20819265_SNP [dm3] X_20948238_SNP [dm6]	C	T	2.946e^-4	0.902	INTERGENIC
2L	3635565	2L_3635565_SNP [dm3] 2L_3635565_SNP [dm6]	A	T	2.953e^-4	0.902	INTRON for
2L	10686277	2L_10686277_SNP [dm3] 2L_10686277_SNP [dm6]	A	T	2.967e^-4	0.902	UTR_3_PRIME CG7296 DOWNSTREAM CG7296
2L	7620553	2L_7620553_DEL [dm3] 2L_7620553_DEL [dm6]	TA	T	2.975e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16114580	2R_16114580_SNP [dm3] 2R_20227075_SNP [dm6]	A	T	2.977e^-4	0.902	INTERGENIC
2L	8142437	2L_8142437_SNP [dm3] 2L_8142437_SNP [dm6]	A	C	2.986e^-4	0.902	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
3L	5638590	3L_5638590_SNP [dm3] 3L_5645490_SNP [dm6]	A	T	2.996e^-4	0.902	INTRON Blimp-1
X	9809493	X_9809493_SNP [dm3] X_9915460_SNP [dm6]	C	T	2.996e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	6925895	2L_6925895_SNP [dm3] 2L_6925895_SNP [dm6]	C	T	3.002e^-4	0.902	UTR_3_PRIME Hrb27C INTRON Hrb27C
3L	7057687	3L_7057687_SNP [dm3] 3L_7064587_SNP [dm6]	C	T	3.015e^-4	0.902	INTRON CG8641
X	5516599	X_5516599_SNP [dm3] X_5622566_SNP [dm6]	C	T	3.021e^-4	0.902	UPSTREAM l_1_G0045 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	16299970	3L_16299970_SNP [dm3] 3L_16306870_SNP [dm6]	A	T	3.023e^-4	0.902	SYNONYMOUS_CODING CG13063 UPSTREAM CG13043 DOWNSTREAM CG13042
2R	13875645	2R_13875645_SNP [dm3] 2R_17988140_SNP [dm6]	T	C	3.030e^-4	0.902	INTRON dpr13
X	14615465	X_14615465_DEL [dm3] X_14721432_DEL [dm6]	GTTTCCAGCTCCG...	G	3.037e^-4	0.902	INTRON NetB
X	11668223	X_11668223_SNP [dm3] X_11774190_SNP [dm6]	G	A	3.042e^-4	0.902	INTRON dy	TF binding site mE1_TFBS_chinmo
3R	22815752	3R_22815752_SNP [dm3] 3R_26990030_SNP [dm6]	A	G	3.043e^-4	0.902	UPSTREAM CG31076 INTERGENIC
2L	10750432	2L_10750432_SNP [dm3] 2L_10750432_SNP [dm6]	A	C	3.050e^-4	0.902	INTRON CG17124
2L	2418348	2L_2418348_SNP [dm3] 2L_2418348_SNP [dm6]	G	T	3.067e^-4	0.902	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3L	634107	3L_634107_DEL [dm3] 3L_634107_DEL [dm6]	GTTG	G	3.069e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14754408	2R_14754408_SNP [dm3] 2R_18866903_SNP [dm6]	A	G	3.076e^-4	0.902	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	5622368	2L_5622368_SNP [dm3] 2L_5622368_SNP [dm6]	T	C	3.081e^-4	0.902	INTRON Cyp6a16
2R	13527319	2R_13527319_SNP [dm3] 2R_17639814_SNP [dm6]	T	A	3.082e^-4	0.902	UPSTREAM CG10936 INTERGENIC
2R	19349621	2R_19349621_SNP [dm3] 2R_23462098_SNP [dm6]	G	A	3.084e^-4	0.902	INTRON CG43795	TF binding site mE1_TFBS_inv
2L	12236504	2L_12236504_SNP [dm3] 2L_12236504_SNP [dm6]	T	A	3.087e^-4	0.902	INTRON aret
3L	5022015	3L_5022015_SNP [dm3] 3L_5022015_SNP [dm6]	A	C	3.089e^-4	0.902	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	14756254	2R_14756254_SNP [dm3] 2R_18868749_SNP [dm6]	A	G	3.091e^-4	0.902	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
X	7888700	X_7888700_SNP [dm3] X_7994667_SNP [dm6]	G	T	3.093e^-4	0.902	INTERGENIC
2R	16114687	2R_16114687_SNP [dm3] 2R_20227182_SNP [dm6]	A	G	3.093e^-4	0.902	INTERGENIC
X	16564658	X_16564658_SNP [dm3] X_16670625_SNP [dm6]	G	C	3.096e^-4	0.902	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16114576	2R_16114576_SNP [dm3] 2R_20227071_SNP [dm6]	C	T	3.100e^-4	0.902	INTERGENIC
2R	14753702	2R_14753702_SNP [dm3] 2R_18866197_SNP [dm6]	A	T	3.100e^-4	0.902	UTR_3_PRIME Dpt UPSTREAM CG43071
3L	10262274	3L_10262274_SNP [dm3] 3L_10269174_SNP [dm6]	C	T	3.103e^-4	0.902	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3R	22815772	3R_22815772_SNP [dm3] 3R_26990050_SNP [dm6]	G	A	3.104e^-4	0.902	UPSTREAM CG31076 INTERGENIC
2R	3439893	2R_3439893_SNP [dm3] 2R_7552388_SNP [dm6]	C	A	3.105e^-4	0.902	INTRON Corin
2R	6180653	2R_6180653_SNP [dm3] 2R_10293148_SNP [dm6]	G	A	3.107e^-4	0.902	INTRON CAP
X	19887736	X_19887736_SNP [dm3] X_19993703_SNP [dm6]	T	A	3.111e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14753650	2R_14753650_DEL [dm3] 2R_18866145_DEL [dm6]	TA	T	3.118e^-4	0.902	UTR_3_PRIME Dpt UPSTREAM CG43071
2R	17487969	2R_17487969_SNP [dm3] 2R_21600464_SNP [dm6]	T	C	3.126e^-4	0.902	INTERGENIC
2L	10394299	2L_10394299_SNP [dm3] 2L_10394299_SNP [dm6]	C	T	3.130e^-4	0.902	NON_SYNONYMOUS_CODING Mdh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8466887	2R_8466887_SNP [dm3] 2R_12579382_SNP [dm6]	A	G	3.133e^-4	0.902	INTRON Sin3A
2R	17486688	2R_17486688_SNP [dm3] 2R_21599183_SNP [dm6]	A	G	3.152e^-4	0.902	INTERGENIC
2R	13497858	2R_13497858_SNP [dm3] 2R_17610353_SNP [dm6]	A	C	3.170e^-4	0.902	INTRON CG10936
2L	10292934	2L_10292934_INS [dm3] 2L_10292934_INS [dm6]	A	AA	3.178e^-4	0.902	UPSTREAM CG5604 INTRON Hand	regulatory region REDfly_CRMs
2L	7620571	2L_7620571_SNP [dm3] 2L_7620571_SNP [dm6]	T	G	3.187e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16708242	3R_16708242_SNP [dm3] 3R_20882520_SNP [dm6]	C	G	3.188e^-4	0.902	INTERGENIC
2L	3572177	2L_3572177_SNP [dm3] 2L_3572177_SNP [dm6]	G	C	3.189e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19793598	2R_19793598_SNP [dm3] 2R_23906075_SNP [dm6]	G	A	3.193e^-4	0.902	SYNONYMOUS_CODING Nap1 DOWNSTREAM CG13562	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17685140	3R_17685140_SNP [dm3] 3R_21859418_SNP [dm6]	C	T	3.196e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11666234	2L_11666234_SNP [dm3] 2L_11666234_SNP [dm6]	T	A	3.197e^-4	0.902	DOWNSTREAM CR44481 INTERGENIC
2L	4055620	2L_4055620_SNP [dm3] 2L_4055620_SNP [dm6]	A	C	3.198e^-4	0.902	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	24217853	3R_24217853_SNP [dm3] 3R_28392131_SNP [dm6]	G	T	3.200e^-4	0.902	INTERGENIC
X	15563821	X_15563821_SNP [dm3] X_15669788_SNP [dm6]	C	A	3.207e^-4	0.902	UTR_5_PRIME CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
2L	1452260	2L_1452260_SNP [dm3] 2L_1452260_SNP [dm6]	G	A	3.210e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18600209	3R_18600209_SNP [dm3] 3R_22774487_SNP [dm6]	A	G	3.211e^-4	0.902	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9439334	3L_9439334_SNP [dm3] 3L_9446234_SNP [dm6]	A	C	3.213e^-4	0.902	SYNONYMOUS_CODING CG33926 UPSTREAM CG3529	TF binding site mE1_TFBS_cad
3L	1363184	3L_1363184_SNP [dm3] 3L_1363184_SNP [dm6]	A	G	3.218e^-4	0.902	INTRON Ptp61F
X	9510253	X_9510253_SNP [dm3] X_9616220_SNP [dm6]	T	C	3.221e^-4	0.902	UTR_5_PRIME CG42797 INTRON CG42797
3R	19775289	3R_19775289_SNP [dm3] 3R_23949567_SNP [dm6]	G	C	3.227e^-4	0.902	INTERGENIC
3L	633009	3L_633009_SNP [dm3] 3L_633009_SNP [dm6]	C	A	3.227e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3163858	X_3163858_SNP [dm3] X_3269825_SNP [dm6]	C	G	3.235e^-4	0.902	INTRON dnc
2L	2542660	2L_2542660_SNP [dm3] 2L_2542660_SNP [dm6]	C	A	3.242e^-4	0.902	INTERGENIC
3L	7688821	3L_7688821_SNP [dm3] 3L_7695721_SNP [dm6]	T	C	3.253e^-4	0.902	UPSTREAM CG44195 DOWNSTREAM Ank2 INTRON CG32373 & 1 other
2R	4158724	2R_4158724_SNP [dm3] 2R_8271219_SNP [dm6]	A	G	3.256e^-4	0.902	INTERGENIC
3L	17255971	3L_17255971_SNP [dm3] 3L_17262871_SNP [dm6]	T	C	3.259e^-4	0.902	INTRON CR43870
X	12355441	X_12355441_SNP [dm3] X_12461408_SNP [dm6]	T	C	3.261e^-4	0.902	INTRON Rab40
2R	6329448	2R_6329448_SNP [dm3] 2R_10441943_SNP [dm6]	T	A	3.267e^-4	0.902	INTRON Galphao
3R	25396970	3R_25396970_SNP [dm3] 3R_29571248_SNP [dm6]	T	C	3.269e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26030795	3R_26030795_SNP [dm3] 3R_30205073_SNP [dm6]	A	G	3.271e^-4	0.902	INTERGENIC
2R	14756238	2R_14756238_SNP [dm3] 2R_18868733_SNP [dm6]	C	T	3.274e^-4	0.902	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
3R	11013204	3R_11013204_SNP [dm3] 3R_15187482_SNP [dm6]	C	T	3.277e^-4	0.902	SYNONYMOUS_CODING Gyc88E
2L	8945213	2L_8945213_SNP [dm3] 2L_8945213_SNP [dm6]	T	C	3.278e^-4	0.902	INTRON C1GalTA	TF binding site mE1_TFBS_cad
2L	8881831	2L_8881831_SNP [dm3] 2L_8881831_SNP [dm6]	T	A	3.294e^-4	0.902	INTERGENIC
2L	19321041	2L_19321041_SNP [dm3] 2L_19321041_SNP [dm6]	G	A	3.294e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6681748	3L_6681748_SNP [dm3] 3L_6688648_SNP [dm6]	A	T	3.295e^-4	0.902	DOWNSTREAM SP1173 INTERGENIC
2L	7944750	2L_7944750_SNP [dm3] 2L_7944750_SNP [dm6]	A	G	3.298e^-4	0.902	INTRON Snoo
2L	10980755	2L_10980755_SNP [dm3] 2L_10980755_SNP [dm6]	G	A	3.299e^-4	0.902	SYNONYMOUS_CODING SCAR	TF binding site mE1_TFBS_cad
2R	17519988	2R_17519988_SNP [dm3] 2R_21632483_SNP [dm6]	T	A	3.324e^-4	0.902	INTRON CG15674 EXON CR42547
2R	14753686	2R_14753686_SNP [dm3] 2R_18866181_SNP [dm6]	G	T	3.330e^-4	0.902	UTR_3_PRIME Dpt UPSTREAM CG43071
2L	4961021	2L_4961021_SNP [dm3] 2L_4961021_SNP [dm6]	G	A	3.339e^-4	0.902	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2617779	2L_2617779_SNP [dm3] 2L_2617779_SNP [dm6]	G	A	3.340e^-4	0.902	INTERGENIC
3R	16145252	3R_16145252_SNP [dm3] 3R_20319530_SNP [dm6]	T	C	3.350e^-4	0.902	INTRON CG42668
3R	16145922	3R_16145922_SNP [dm3] 3R_20320200_SNP [dm6]	A	C	3.356e^-4	0.902	INTRON CG42668
3L	17938407	3L_17938407_SNP [dm3] 3L_17945307_SNP [dm6]	A	C	3.357e^-4	0.902	INTRON CG43174
3L	9279052	3L_9279052_SNP [dm3] 3L_9285952_SNP [dm6]	C	T	3.374e^-4	0.902	UTR_3_PRIME GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14270156	2R_14270156_SNP [dm3] 2R_18382651_SNP [dm6]	C	G	3.384e^-4	0.902	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
X	8346196	X_8346196_SNP [dm3] X_8452163_SNP [dm6]	T	C	3.389e^-4	0.902	NON_SYNONYMOUS_CODING org-1	TF binding site mE1_TFBS_cad
3L	10220365	3L_10220365_SNP [dm3] 3L_10227265_SNP [dm6]	A	G	3.408e^-4	0.902	INTERGENIC
2L	10344270	2L_10344270_SNP [dm3] 2L_10344270_SNP [dm6]	C	T	3.413e^-4	0.902	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3436951	3R_3436951_SNP [dm3] 3R_7611229_SNP [dm6]	C	G	3.414e^-4	0.902	INTRON CG34127
X	14332856	X_14332856_SNP [dm3] X_14438823_SNP [dm6]	G	A	3.424e^-4	0.902	INTRON dpr8
2R	12670067	2R_12670067_SNP [dm3] 2R_16782562_SNP [dm6]	A	G	3.428e^-4	0.902	NON_SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6082931	X_6082931_SNP [dm3] X_6188898_SNP [dm6]	G	T	3.430e^-4	0.902	INTRON Ca-alpha1T
3L	9231862	3L_9231862_SNP [dm3] 3L_9238762_SNP [dm6]	G	A	3.431e^-4	0.902	INTERGENIC
2R	14752050	2R_14752050_SNP [dm3] 2R_18864545_SNP [dm6]	T	A	3.433e^-4	0.902	UTR_3_PRIME CG43070 DOWNSTREAM CG43071
3L	14923414	3L_14923414_SNP [dm3] 3L_14930314_SNP [dm6]	A	G	3.434e^-4	0.902	INTRON DCX-EMAP
X	18583047	X_18583047_SNP [dm3] X_18689014_SNP [dm6]	A	C	3.451e^-4	0.902	UTR_3_PRIME Cyp18a1 DOWNSTREAM Cyp18a1 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8341207	3L_8341207_SNP [dm3] 3L_8348107_SNP [dm6]	C	T	3.458e^-4	0.902	INTRON GAPcenA	TF binding site mE1_TFBS_cad
2L	14410632	2L_14410632_INS [dm3] 2L_14410632_INS [dm6]	A	AGACACAA	3.459e^-4	0.902	DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3486929	2R_3486929_SNP [dm3] 2R_7599424_SNP [dm6]	A	C	3.460e^-4	0.902	INTRON CG1358	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10342435	3L_10342435_MNP [dm3] 3L_10349335_MNP [dm6]	TCTG	CTGC	3.461e^-4	0.902	INTRON CR44327
2L	9410259	2L_9410259_SNP [dm3] 2L_9410259_SNP [dm6]	C	T	3.469e^-4	0.902	INTRON Shawl
3L	12859930	3L_12859930_INS [dm3] 3L_12866830_INS [dm6]	T	CA	3.474e^-4	0.902	INTERGENIC
3L	915242	3L_915242_DEL [dm3] 3L_915242_DEL [dm6]	TCTTCCCCGTT...	T	3.474e^-4	0.902	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	7088871	2L_7088871_SNP [dm3] 2L_7088871_SNP [dm6]	C	T	3.478e^-4	0.902	INTERGENIC
3R	15750002	3R_15750002_SNP [dm3] 3R_19924280_SNP [dm6]	T	C	3.479e^-4	0.902	INTRON CG4462
3R	16145881	3R_16145881_SNP [dm3] 3R_20320159_SNP [dm6]	C	T	3.481e^-4	0.902	INTRON CG42668
3R	25474405	3R_25474405_SNP [dm3] 3R_29648683_SNP [dm6]	G	T	3.482e^-4	0.902	INTRON Dop1R2
2R	1031029	2R_1031029_SNP [dm3] 2R_5143524_SNP [dm6]	C	A	3.483e^-4	0.902	INTERGENIC	transposable element FlyBase
X	12087522	X_12087522_SNP [dm3] X_12193489_SNP [dm6]	G	A	3.488e^-4	0.902	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	13767106	3R_13767106_SNP [dm3] 3R_17941384_SNP [dm6]	G	T	3.495e^-4	0.902	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8820587	2R_8820587_SNP [dm3] 2R_12933082_SNP [dm6]	G	T	3.498e^-4	0.902	SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4825500	2L_4825500_SNP [dm3] 2L_4825500_SNP [dm6]	G	A	3.501e^-4	0.902	INTRON CG15628
2R	7429781	2R_7429781_SNP [dm3] 2R_11542276_SNP [dm6]	G	T	3.504e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10393507	2L_10393507_SNP [dm3] 2L_10393507_SNP [dm6]	T	C	3.506e^-4	0.902	DOWNSTREAM da & 1 other INTERGENIC
2R	12670084	2R_12670084_SNP [dm3] 2R_16782579_SNP [dm6]	T	C	3.507e^-4	0.902	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12242482	2R_12242482_SNP [dm3] 2R_16354977_SNP [dm6]	C	A	3.509e^-4	0.902	INTRON CG30098
3R	26030389	3R_26030389_SNP [dm3] 3R_30204667_SNP [dm6]	T	C	3.513e^-4	0.902	INTERGENIC
3R	22318071	3R_22318071_SNP [dm3] 3R_26492349_SNP [dm6]	C	A	3.513e^-4	0.902	INTRON plum
3L	5634603	3L_5634603_SNP [dm3] 3L_5641503_SNP [dm6]	A	T	3.519e^-4	0.902	UPSTREAM Blimp-1 INTRON Blimp-1
2R	18966599	2R_18966599_SNP [dm3] 2R_23079076_SNP [dm6]	T	C	3.522e^-4	0.902	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18600260	3R_18600260_SNP [dm3] 3R_22774538_SNP [dm6]	T	G	3.529e^-4	0.902	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13984635	3R_13984635_SNP [dm3] 3R_18158913_SNP [dm6]	A	T	3.535e^-4	0.902	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3L	16283302	3L_16283302_SNP [dm3] 3L_16290202_SNP [dm6]	G	A	3.537e^-4	0.902	UTR_3_PRIME CG13045
X	13964373	X_13964373_SNP [dm3] X_14070340_SNP [dm6]	T	G	3.539e^-4	0.902	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	11184863	3L_11184863_SNP [dm3] 3L_11191763_SNP [dm6]	G	T	3.547e^-4	0.902	INTRON GlcAT-P
3L	19576985	3L_19576985_SNP [dm3] 3L_19583885_SNP [dm6]	C	T	3.556e^-4	0.902	INTRON Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19775435	2L_19775435_SNP [dm3] 2L_19775435_SNP [dm6]	C	G	3.558e^-4	0.902	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
2R	17925648	2R_17925648_SNP [dm3] 2R_22038143_SNP [dm6]	T	C	3.564e^-4	0.902	INTRON CG34370
2R	3486888	2R_3486888_SNP [dm3] 2R_7599383_SNP [dm6]	A	C	3.566e^-4	0.902	INTRON CG1358	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15293650	X_15293650_DEL [dm3] X_15399617_DEL [dm6]	TC	T	3.568e^-4	0.902	INTRON Cngl
3R	26018638	3R_26018638_SNP [dm3] 3R_30192916_SNP [dm6]	C	A	3.568e^-4	0.902	INTERGENIC
3L	6114523	3L_6114523_DEL [dm3] 3L_6121423_DEL [dm6]	AA	T	3.573e^-4	0.902	INTRON Ets65A
X	9185052	X_9185052_DEL [dm3] X_9291019_DEL [dm6]	TCGTGTTATCTTTCACATT...	T	3.579e^-4	0.902	INTRON lz	TF binding site mE1_TFBS_Kr
2R	8446983	2R_8446983_DEL [dm3] 2R_12559478_DEL [dm6]	AA	A	3.592e^-4	0.902	INTRON fra
3R	26080872	3R_26080872_SNP [dm3] 3R_30255150_SNP [dm6]	C	A	3.602e^-4	0.902	INTERGENIC
2L	10750435	2L_10750435_SNP [dm3] 2L_10750435_SNP [dm6]	A	G	3.608e^-4	0.902	INTRON CG17124
2R	10190285	2R_10190285_SNP [dm3] 2R_14302780_SNP [dm6]	A	T	3.610e^-4	0.902	UPSTREAM tej INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	14754532	2R_14754532_SNP [dm3] 2R_18867027_SNP [dm6]	C	G	3.613e^-4	0.902	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
3L	6179030	3L_6179030_SNP [dm3] 3L_6185930_SNP [dm6]	G	T	3.615e^-4	0.902	UTR_3_PRIME D19A DOWNSTREAM CG43293
2R	17922521	2R_17922521_SNP [dm3] 2R_22035016_SNP [dm6]	T	C	3.615e^-4	0.902	SYNONYMOUS_CODING CG9308 INTRON CG34370
2R	18362591	2R_18362591_SNP [dm3] 2R_22475086_SNP [dm6]	C	A	3.619e^-4	0.902	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17397117	2R_17397117_SNP [dm3] 2R_21509612_SNP [dm6]	A	G	3.619e^-4	0.902	INTRON MESK2
3R	15872306	3R_15872306_SNP [dm3] 3R_20046584_SNP [dm6]	A	T	3.621e^-4	0.902	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 DOWNSTREAM Indy-2 INTRON CG17193
2L	11230732	2L_11230732_SNP [dm3] 2L_11230732_SNP [dm6]	C	T	3.636e^-4	0.902	INTRON ab
2L	9646212	2L_9646212_SNP [dm3] 2L_9646212_SNP [dm6]	G	T	3.640e^-4	0.902	INTRON Apoltp
X	14614863	X_14614863_SNP [dm3] X_14720830_SNP [dm6]	G	A	3.643e^-4	0.902	INTRON NetB
X	15795230	X_15795230_DEL [dm3] X_15901197_DEL [dm6]	CTATC	C	3.644e^-4	0.902	INTRON shi
3R	16165421	3R_16165421_SNP [dm3] 3R_20339699_SNP [dm6]	A	G	3.644e^-4	0.902	INTRON Ir92a
2L	10506956	2L_10506956_SNP [dm3] 2L_10506956_SNP [dm6]	C	A	3.649e^-4	0.902	UPSTREAM CG6094 & 1 other DOWNSTREAM CG7384 EXON CR44224	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19070234	3R_19070234_SNP [dm3] 3R_23244512_SNP [dm6]	A	G	3.654e^-4	0.902	INTRON CG4467
3R	14178742	3R_14178742_SNP [dm3] 3R_18353020_SNP [dm6]	C	A	3.656e^-4	0.902	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4241831	3L_4241831_INS [dm3] 3L_4241831_INS [dm6]	C	CTAAAGAATACTTTTAACTT...	3.656e^-4	0.902	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5900794	2L_5900794_SNP [dm3] 2L_5900794_SNP [dm6]	G	A	3.658e^-4	0.902	UPSTREAM CR44579 INTERGENIC
X	13537971	X_13537971_SNP [dm3] X_13643938_SNP [dm6]	G	T	3.658e^-4	0.902	INTRON NFAT
2R	18476095	2R_18476095_SNP [dm3] 2R_22588590_SNP [dm6]	G	A	3.661e^-4	0.902	INTRON dnr1
X	14332885	X_14332885_SNP [dm3] X_14438852_SNP [dm6]	T	C	3.661e^-4	0.902	INTRON dpr8
2R	3679618	2R_3679618_SNP [dm3] 2R_7792113_SNP [dm6]	T	G	3.663e^-4	0.902	UTR_3_PRIME Gapdh1 DOWNSTREAM CG12824	TF binding site mE1_TFBS_HSA
3L	19961322	3L_19961322_SNP [dm3] 3L_19968222_SNP [dm6]	A	G	3.665e^-4	0.902	INTRON Ac76E
2L	10503730	2L_10503730_SNP [dm3] 2L_10503730_SNP [dm6]	A	G	3.666e^-4	0.902	INTRON Myo31DF
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	3.672e^-4	0.902	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26050811	3R_26050811_SNP [dm3] 3R_30225089_SNP [dm6]	T	A	3.689e^-4	0.902	INTERGENIC
3L	1914851	3L_1914851_SNP [dm3] 3L_1914851_SNP [dm6]	C	T	3.706e^-4	0.902	INTERGENIC
2L	20875017	2L_20875017_SNP [dm3] 2L_20875017_SNP [dm6]	T	C	3.709e^-4	0.902	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15092897	3R_15092897_SNP [dm3] 3R_19267175_SNP [dm6]	G	A	3.712e^-4	0.902	INTERGENIC
3L	2341419	3L_2341419_SNP [dm3] 3L_2341419_SNP [dm6]	T	C	3.712e^-4	0.902	INTRON MsR1	TF binding site mE1_TFBS_inv
3R	22811454	3R_22811454_SNP [dm3] 3R_26985732_SNP [dm6]	A	C	3.720e^-4	0.902	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
2L	8967618	2L_8967618_SNP [dm3] 2L_8967618_SNP [dm6]	C	T	3.721e^-4	0.902	SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2R	4189216	2R_4189216_SNP [dm3] 2R_8301711_SNP [dm6]	T	C	3.726e^-4	0.902	INTERGENIC
3L	2790464	3L_2790464_SNP [dm3] 3L_2790464_SNP [dm6]	T	G	3.732e^-4	0.902	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8455925	2R_8455925_SNP [dm3] 2R_12568420_SNP [dm6]	C	T	3.734e^-4	0.902	SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
X	10988509	X_10988509_SNP [dm3] X_11094476_SNP [dm6]	A	G	3.736e^-4	0.902	UTR_3_PRIME CG2061 EXON CR45604
X	11667615	X_11667615_SNP [dm3] X_11773582_SNP [dm6]	T	C	3.737e^-4	0.902	INTRON dy
3L	7920767	3L_7920767_SNP [dm3] 3L_7927667_SNP [dm6]	T	A	3.737e^-4	0.902	INTRON syd	TF binding site mE1_TFBS_cad
2L	12713355	2L_12713355_SNP [dm3] 2L_12713355_SNP [dm6]	T	A	3.741e^-4	0.902	SYNONYMOUS_CODING CG5792 UPSTREAM CG5787
2L	7960585	2L_7960585_SNP [dm3] 2L_7960585_SNP [dm6]	T	C	3.743e^-4	0.902	INTRON Snoo
2L	11230628	2L_11230628_SNP [dm3] 2L_11230628_SNP [dm6]	C	G	3.753e^-4	0.902	INTRON ab
3R	14012559	3R_14012559_SNP [dm3] 3R_18186837_SNP [dm6]	G	A	3.757e^-4	0.902	SYNONYMOUS_CODING Arp5 DOWNSTREAM CG12321	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	16114584	2R_16114584_SNP [dm3] 2R_20227079_SNP [dm6]	G	C	3.759e^-4	0.902	INTERGENIC
2L	10686263	2L_10686263_SNP [dm3] 2L_10686263_SNP [dm6]	C	T	3.760e^-4	0.902	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
3L	9962594	3L_9962594_SNP [dm3] 3L_9969494_SNP [dm6]	G	A	3.766e^-4	0.902	INTRON Nc
3L	10039434	3L_10039434_SNP [dm3] 3L_10046334_SNP [dm6]	A	G	3.770e^-4	0.902	INTRON dpr6
2R	17483013	2R_17483013_SNP [dm3] 2R_21595508_SNP [dm6]	T	C	3.776e^-4	0.902	INTERGENIC
3L	11362548	3L_11362548_SNP [dm3] 3L_11369448_SNP [dm6]	C	A	3.780e^-4	0.902	INTERGENIC
2L	9410678	2L_9410678_SNP [dm3] 2L_9410678_SNP [dm6]	T	A	3.789e^-4	0.902	INTRON Shawl
3L	8907900	3L_8907900_SNP [dm3] 3L_8914800_SNP [dm6]	T	G	3.791e^-4	0.902	UPSTREAM CR43970 INTRON Tsp66E
2L	7534746	2L_7534746_SNP [dm3] 2L_7534746_SNP [dm6]	G	A	3.802e^-4	0.902	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4239857	3L_4239857_SNP [dm3] 3L_4239857_SNP [dm6]	G	C	3.806e^-4	0.902	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4240093	3L_4240093_SNP [dm3] 3L_4240093_SNP [dm6]	A	G	3.806e^-4	0.902	UPSTREAM CG14997 EXON CR45738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	13086890	2L_13086890_SNP [dm3] 2L_13086890_SNP [dm6]	A	G	3.809e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24860256	3R_24860256_SNP [dm3] 3R_29034534_SNP [dm6]	G	T	3.814e^-4	0.902	UPSTREAM Cpsf100 & 1 other DOWNSTREAM CR45044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15488663	3L_15488663_SNP [dm3] 3L_15495563_SNP [dm6]	C	T	3.818e^-4	0.902	UPSTREAM CG12355 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19880435	2L_19880435_SNP [dm3] 2L_19880435_SNP [dm6]	T	C	3.823e^-4	0.902	INTRON sick
2R	13496606	2R_13496606_SNP [dm3] 2R_17609101_SNP [dm6]	G	T	3.840e^-4	0.902	NON_SYNONYMOUS_CODING CG10936
3L	10871925	3L_10871925_SNP [dm3] 3L_10878825_SNP [dm6]	A	C	3.841e^-4	0.902	NON_SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9715763	3L_9715763_SNP [dm3] 3L_9722663_SNP [dm6]	C	T	3.855e^-4	0.902	NON_SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9410107	2L_9410107_SNP [dm3] 2L_9410107_SNP [dm6]	G	A	3.860e^-4	0.902	INTRON Shawl
2L	8895939	2L_8895939_SNP [dm3] 2L_8895939_SNP [dm6]	C	T	3.862e^-4	0.902	INTERGENIC
X	17194335	X_17194335_SNP [dm3] X_17300302_SNP [dm6]	A	G	3.868e^-4	0.902	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16456076	3R_16456076_SNP [dm3] 3R_20630354_SNP [dm6]	A	C	3.877e^-4	0.902	SPLICE_SITE_REGION Pi3K92E INTRON Pi3K92E
2L	8132290	2L_8132290_SNP [dm3] 2L_8132290_SNP [dm6]	G	T	3.881e^-4	0.902	INTRON CG8668
2L	9773943	2L_9773943_SNP [dm3] 2L_9773943_SNP [dm6]	A	G	3.882e^-4	0.902	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2L	1362170	2L_1362170_SNP [dm3] 2L_1362170_SNP [dm6]	T	A	3.883e^-4	0.902	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
3L	5021426	3L_5021426_SNP [dm3] 3L_5021426_SNP [dm6]	T	C	3.888e^-4	0.902	INTRON Con
2L	11400991	2L_11400991_SNP [dm3] 2L_11400991_SNP [dm6]	C	T	3.888e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1023559	2L_1023559_SNP [dm3] 2L_1023559_SNP [dm6]	C	T	3.904e^-4	0.902	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2R	18439482	2R_18439482_SNP [dm3] 2R_22551977_SNP [dm6]	A	G	3.912e^-4	0.902	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
3R	17358547	3R_17358547_SNP [dm3] 3R_21532825_SNP [dm6]	T	G	3.921e^-4	0.902	INTRON CR43372
2L	383450	2L_383450_SNP [dm3] 2L_383450_SNP [dm6]	T	C	3.923e^-4	0.902	INTRON al
2L	5118969	2L_5118969_SNP [dm3] 2L_5118969_SNP [dm6]	A	T	3.923e^-4	0.902	INTRON Msp300
2R	5939978	2R_5939978_SNP [dm3] 2R_10052473_SNP [dm6]	A	C	3.927e^-4	0.902	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1516152	2L_1516152_SNP [dm3] 2L_1516152_SNP [dm6]	G	T	3.949e^-4	0.902	DOWNSTREAM CG18132 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16309191	2R_16309191_SNP [dm3] 2R_20421686_SNP [dm6]	A	C	3.957e^-4	0.902	INTERGENIC
3R	18598206	3R_18598206_DEL [dm3] 3R_22772484_DEL [dm6]	ATTATTTAAA	A	3.961e^-4	0.902	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	12681619	2R_12681619_SNP [dm3] 2R_16794114_SNP [dm6]	G	A	3.970e^-4	0.902	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
2L	7242303	2L_7242303_SNP [dm3] 2L_7242303_SNP [dm6]	C	T	3.970e^-4	0.902	INTRON Ndae1
2L	12713368	2L_12713368_SNP [dm3] 2L_12713368_SNP [dm6]	T	A	3.972e^-4	0.902	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787
2L	669305	2L_669305_SNP [dm3] 2L_669305_SNP [dm6]	T	A	3.977e^-4	0.902	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	16104266	3R_16104266_SNP [dm3] 3R_20278544_SNP [dm6]	C	G	3.995e^-4	0.902	INTRON cic	TF binding site mE1_TFBS_inv
X	8006666	X_8006666_SNP [dm3] X_8112633_SNP [dm6]	C	T	3.995e^-4	0.902	INTRON Gclc
3L	8315023	3L_8315023_SNP [dm3] 3L_8321923_SNP [dm6]	G	A	4.000e^-4	0.902	NON_SYNONYMOUS_CODING CG13670
3L	11429926	3L_11429926_SNP [dm3] 3L_11436826_SNP [dm6]	G	T	4.004e^-4	0.902	DOWNSTREAM CR44548 INTERGENIC
X	19887561	X_19887561_SNP [dm3] X_19993528_SNP [dm6]	G	T	4.009e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21283609	3R_21283609_SNP [dm3] 3R_25457887_SNP [dm6]	G	C	4.019e^-4	0.902	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2L	20374049	2L_20374049_SNP [dm3] 2L_20374049_SNP [dm6]	A	G	4.030e^-4	0.902	UTR_5_PRIME Ugt37a1
3L	9397406	3L_9397406_SNP [dm3] 3L_9404306_SNP [dm6]	T	C	4.048e^-4	0.902	UPSTREAM Cpr67B INTERGENIC
3R	13523965	3R_13523965_SNP [dm3] 3R_17698243_SNP [dm6]	C	T	4.053e^-4	0.902	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
2L	13792113	2L_13792113_SNP [dm3] 2L_13792113_SNP [dm6]	T	A	4.066e^-4	0.902	NON_SYNONYMOUS_CODING CG16863	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12355417	X_12355417_SNP [dm3] X_12461384_SNP [dm6]	A	C	4.068e^-4	0.902	INTRON Rab40
2R	18747725	2R_18747725_SNP [dm3] 2R_22860202_SNP [dm6]	T	C	4.078e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21029190	2L_21029190_DEL [dm3] 2L_21029190_DEL [dm6]	TTCT	T	4.090e^-4	0.902	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15421311	X_15421311_SNP [dm3] X_15527278_SNP [dm6]	C	T	4.090e^-4	0.902	INTRON Ac13E
2R	1020514	2R_1020514_SNP [dm3] 2R_5133009_SNP [dm6]	C	G	4.093e^-4	0.902	INTERGENIC	transposable element FlyBase
2R	19349615	2R_19349615_SNP [dm3] 2R_23462092_SNP [dm6]	C	T	4.098e^-4	0.902	INTRON CG43795	TF binding site mE1_TFBS_inv
X	17678447	X_17678447_SNP [dm3] X_17784414_SNP [dm6]	A	T	4.102e^-4	0.902	INTERGENIC
X	17248404	X_17248404_SNP [dm3] X_17354371_SNP [dm6]	A	C	4.103e^-4	0.902	INTERGENIC
2L	2685132	2L_2685132_SNP [dm3] 2L_2685132_SNP [dm6]	G	A	4.111e^-4	0.902	INTRON CG31690
2R	1220321	2R_1220321_SNP [dm3] 2R_5332816_SNP [dm6]	G	A	4.114e^-4	0.902	INTERGENIC	transposable element FlyBase
2L	1305051	2L_1305051_SNP [dm3] 2L_1305051_SNP [dm6]	T	C	4.117e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18399784	2R_18399784_SNP [dm3] 2R_22512279_SNP [dm6]	T	A	4.119e^-4	0.902	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14752588	2R_14752588_SNP [dm3] 2R_18865083_SNP [dm6]	T	G	4.123e^-4	0.902	UPSTREAM Dpt DOWNSTREAM CG43070 INTRON CG43071
3L	14304486	3L_14304486_INS [dm3] 3L_14311386_INS [dm6]	A	ATATATGTAAACATTTAAAG...	4.124e^-4	0.902	INTRON fz
3L	18610567	3L_18610567_SNP [dm3] 3L_18617467_SNP [dm6]	G	A	4.125e^-4	0.902	UTR_5_PRIME CG4174 & 1 other UPSTREAM CG13380 & 1 other DOWNSTREAM not	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
2R	11604196	2R_11604196_SNP [dm3] 2R_15716691_SNP [dm6]	A	C	4.126e^-4	0.902	INTERGENIC
X	3253267	X_3253267_MNP [dm3] X_3359234_MNP [dm6]	GTC	AAT	4.132e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16114685	2R_16114685_SNP [dm3] 2R_20227180_SNP [dm6]	T	C	4.135e^-4	0.902	INTERGENIC
3R	22553995	3R_22553995_SNP [dm3] 3R_26728273_SNP [dm6]	G	T	4.137e^-4	0.902	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
3L	7955099	3L_7955099_DEL [dm3] 3L_7961999_DEL [dm6]	TT	T	4.140e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17358546	3R_17358546_SNP [dm3] 3R_21532824_SNP [dm6]	A	G	4.140e^-4	0.902	INTRON CR43372
2R	15183286	2R_15183286_DEL [dm3] 2R_19295781_DEL [dm6]	GGCATTAGTTGA...	G	4.140e^-4	0.902	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16177498	2R_16177498_SNP [dm3] 2R_20289993_SNP [dm6]	C	G	4.142e^-4	0.902	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
2L	3919826	2L_3919826_INS [dm3] 2L_3919826_INS [dm6]	T	TAAATTT	4.144e^-4	0.902	INTRON fred
3L	2551391	3L_2551391_SNP [dm3] 3L_2551391_SNP [dm6]	T	C	4.149e^-4	0.902	INTRON Spn
X	14285348	X_14285348_SNP [dm3] X_14391315_SNP [dm6]	A	C	4.153e^-4	0.902	INTRON dpr8
3L	12471366	3L_12471366_SNP [dm3] 3L_12478266_SNP [dm6]	C	T	4.154e^-4	0.902	INTRON CG10663
X	13924574	X_13924574_SNP [dm3] X_14030541_SNP [dm6]	C	A	4.157e^-4	0.902	INTERGENIC
2L	21028211	2L_21028211_SNP [dm3] 2L_21028211_SNP [dm6]	C	A	4.159e^-4	0.902	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14756701	2R_14756701_SNP [dm3] 2R_18869196_SNP [dm6]	C	G	4.160e^-4	0.902	INTERGENIC
2L	16052621	2L_16052621_SNP [dm3] 2L_16052621_SNP [dm6]	A	C	4.160e^-4	0.902	INTRON beat-Ia
X	11658949	X_11658949_SNP [dm3] X_11764916_SNP [dm6]	C	G	4.160e^-4	0.902	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	15966710	X_15966710_SNP [dm3] X_16072677_SNP [dm6]	A	G	4.168e^-4	0.902	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3R	13984674	3R_13984674_SNP [dm3] 3R_18158952_SNP [dm6]	A	G	4.169e^-4	0.902	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2R	15053454	2R_15053454_SNP [dm3] 2R_19165949_SNP [dm6]	C	A	4.171e^-4	0.902	UTR_5_PRIME CG10737 INTRON CG10737
2L	8896262	2L_8896262_SNP [dm3] 2L_8896262_SNP [dm6]	G	C	4.174e^-4	0.902	INTERGENIC
2R	12238002	2R_12238002_SNP [dm3] 2R_16350497_SNP [dm6]	A	G	4.183e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23901758	3R_23901758_DEL [dm3] 3R_28076036_DEL [dm6]	TCGCCAGAAGCGAGGGAGGG...	T	4.197e^-4	0.902	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20310795	3R_20310795_SNP [dm3] 3R_24485073_SNP [dm6]	C	G	4.200e^-4	0.902	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17686762	X_17686762_SNP [dm3] X_17792729_SNP [dm6]	C	G	4.208e^-4	0.902	INTRON OdsH
2L	5900852	2L_5900852_SNP [dm3] 2L_5900852_SNP [dm6]	A	C	4.209e^-4	0.902	UPSTREAM CR44579 INTERGENIC
2L	3572181	2L_3572181_SNP [dm3] 2L_3572181_SNP [dm6]	C	G	4.215e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16049393	2R_16049393_SNP [dm3] 2R_20161888_SNP [dm6]	G	A	4.216e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12725183	2L_12725183_SNP [dm3] 2L_12725183_SNP [dm6]	A	T	4.224e^-4	0.902	INTRON MRP
3R	16104308	3R_16104308_SNP [dm3] 3R_20278586_SNP [dm6]	A	T	4.225e^-4	0.902	INTRON cic	TF binding site mE1_TFBS_inv
3R	22814601	3R_22814601_SNP [dm3] 3R_26988879_SNP [dm6]	A	G	4.228e^-4	0.902	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2R	12242498	2R_12242498_SNP [dm3] 2R_16354993_SNP [dm6]	G	T	4.248e^-4	0.902	INTRON CG30098
3L	633953	3L_633953_SNP [dm3] 3L_633953_SNP [dm6]	C	T	4.249e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6340800	2R_6340800_SNP [dm3] 2R_10453295_SNP [dm6]	C	A	4.251e^-4	0.902	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2L	4824212	2L_4824212_SNP [dm3] 2L_4824212_SNP [dm6]	A	T	4.252e^-4	0.902	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18652020	2L_18652020_SNP [dm3] 2L_18652020_SNP [dm6]	G	T	4.255e^-4	0.902	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14756252	2R_14756252_SNP [dm3] 2R_18868747_SNP [dm6]	C	A	4.259e^-4	0.902	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2L	20874709	2L_20874709_SNP [dm3] 2L_20874709_SNP [dm6]	T	C	4.275e^-4	0.902	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	11668213	X_11668213_SNP [dm3] X_11774180_SNP [dm6]	G	A	4.280e^-4	0.902	INTRON dy	TF binding site mE1_TFBS_chinmo
X	11696430	X_11696430_SNP [dm3] X_11802397_SNP [dm6]	G	A	4.283e^-4	0.902	UTR_3_PRIME Hsc70-3 DOWNSTREAM CkIIbeta
2R	12776055	2R_12776055_SNP [dm3] 2R_16888550_SNP [dm6]	A	G	4.285e^-4	0.902	INTRON CG8910
2R	15474983	2R_15474983_SNP [dm3] 2R_19587478_SNP [dm6]	A	T	4.286e^-4	0.902	SYNONYMOUS_CODING CG42878 INTRON sm
2L	587301	2L_587301_SNP [dm3] 2L_587301_SNP [dm6]	A	C	4.287e^-4	0.902	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10324567	2R_10324567_SNP [dm3] 2R_14437062_SNP [dm6]	T	C	4.294e^-4	0.902	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8323170	2L_8323170_SNP [dm3] 2L_8323170_SNP [dm6]	T	A	4.301e^-4	0.902	INTRON CG7781
3L	8205857	3L_8205857_SNP [dm3] 3L_8212757_SNP [dm6]	T	C	4.301e^-4	0.902	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6996347	3L_6996347_SNP [dm3] 3L_7003247_SNP [dm6]	G	A	4.312e^-4	0.902	INTRON Mp
2L	9808159	2L_9808159_SNP [dm3] 2L_9808159_SNP [dm6]	A	G	4.316e^-4	0.902	INTRON nAChRalpha6
3L	15114024	3L_15114024_SNP [dm3] 3L_15120924_SNP [dm6]	A	T	4.321e^-4	0.902	SYNONYMOUS_CODING CG16959 UPSTREAM CG32847 INTRON Cep135	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8881822	2L_8881822_SNP [dm3] 2L_8881822_SNP [dm6]	T	A	4.322e^-4	0.902	INTERGENIC
X	20402991	X_20402991_SNP [dm3] X_20531964_SNP [dm6]	A	C	4.328e^-4	0.902	INTERGENIC
2L	7590176	2L_7590176_SNP [dm3] 2L_7590176_SNP [dm6]	A	T	4.328e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10750430	2L_10750430_SNP [dm3] 2L_10750430_SNP [dm6]	A	T	4.334e^-4	0.902	INTRON CG17124
3L	7841164	3L_7841164_INS [dm3] 3L_7848064_INS [dm6]	A	ACGG	4.351e^-4	0.902	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17278193	2R_17278193_SNP [dm3] 2R_21390688_SNP [dm6]	G	A	4.355e^-4	0.902	NON_SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2R	4788161	2R_4788161_SNP [dm3] 2R_8900656_SNP [dm6]	G	T	4.356e^-4	0.902	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17794921	2R_17794921_SNP [dm3] 2R_21907416_SNP [dm6]	A	G	4.356e^-4	0.902	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12872012	3L_12872012_SNP [dm3] 3L_12878912_SNP [dm6]	A	T	4.357e^-4	0.902	INTERGENIC
2R	15183301	2R_15183301_MNP [dm3] 2R_19295796_MNP [dm6]	GTC	CCA	4.359e^-4	0.902	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	905460	2L_905460_SNP [dm3] 2L_905460_SNP [dm6]	T	A	4.365e^-4	0.902	INTERGENIC
3R	22814530	3R_22814530_SNP [dm3] 3R_26988808_SNP [dm6]	T	A	4.371e^-4	0.902	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
X	17216428	X_17216428_SNP [dm3] X_17322395_SNP [dm6]	T	A	4.382e^-4	0.902	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	19069627	3R_19069627_SNP [dm3] 3R_23243905_SNP [dm6]	C	T	4.383e^-4	0.902	INTRON CG4467	TF binding site mE1_TFBS_inv
X	9118394	X_9118394_SNP [dm3] X_9224361_SNP [dm6]	A	G	4.387e^-4	0.902	INTERGENIC
2R	13951209	2R_13951209_SNP [dm3] 2R_18063704_SNP [dm6]	A	T	4.395e^-4	0.902	INTRON CG34386
2L	5531518	2L_5531518_SNP [dm3] 2L_5531518_SNP [dm6]	G	A	4.395e^-4	0.902	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11666189	2L_11666189_SNP [dm3] 2L_11666189_SNP [dm6]	A	T	4.404e^-4	0.902	DOWNSTREAM CR44481 INTERGENIC
2R	11305689	2R_11305689_SNP [dm3] 2R_15418184_SNP [dm6]	G	A	4.405e^-4	0.902	INTRON CG43729
3L	633839	3L_633839_SNP [dm3] 3L_633839_SNP [dm6]	G	T	4.406e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14995276	2R_14995276_SNP [dm3] 2R_19107771_SNP [dm6]	G	A	4.407e^-4	0.902	INTRON 5-HT1A
3R	26017576	3R_26017576_SNP [dm3] 3R_30191854_SNP [dm6]	A	C	4.408e^-4	0.902	UPSTREAM CG9747 INTERGENIC
2L	2472904	2L_2472904_SNP [dm3] 2L_2472904_SNP [dm6]	G	A	4.409e^-4	0.902	EXON CR45286	regulatory region REDfly_CRMs
2L	12713508	2L_12713508_SNP [dm3] 2L_12713508_SNP [dm6]	T	C	4.416e^-4	0.902	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
2L	2439054	2L_2439054_SNP [dm3] 2L_2439054_SNP [dm6]	A	T	4.423e^-4	0.902	INTRON dpp	regulatory region REDfly_CRMs
3L	13466926	3L_13466926_SNP [dm3] 3L_13473826_SNP [dm6]	C	A	4.424e^-4	0.902	INTRON CG10089
2L	13004481	2L_13004481_SNP [dm3] 2L_13004481_SNP [dm6]	A	T	4.428e^-4	0.902	UTR_5_PRIME Tor UPSTREAM Vha68-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25474587	3R_25474587_INS [dm3] 3R_29648865_INS [dm6]	A	AA	4.431e^-4	0.902	INTRON Dop1R2
2R	14270090	2R_14270090_SNP [dm3] 2R_18382585_SNP [dm6]	T	C	4.431e^-4	0.902	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	10277243	3L_10277243_SNP [dm3] 3L_10284143_SNP [dm6]	C	T	4.431e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11430006	3L_11430006_SNP [dm3] 3L_11436906_SNP [dm6]	T	G	4.433e^-4	0.902	DOWNSTREAM CR44548 INTERGENIC
2L	2754819	2L_2754819_SNP [dm3] 2L_2754819_SNP [dm6]	G	C	4.435e^-4	0.902	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	1076702	2R_1076702_SNP [dm3] 2R_5189197_SNP [dm6]	T	A	4.438e^-4	0.902	INTRON Nipped-A	transposable element FlyBase
3L	4241834	3L_4241834_INS [dm3] 3L_4241834_INS [dm6]	A	AAGGGCAATTGAGATAAATT...	4.439e^-4	0.902	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17802824	2R_17802824_SNP [dm3] 2R_21915319_SNP [dm6]	G	T	4.441e^-4	0.902	INTRON Fili
X	10049666	X_10049666_SNP [dm3] X_10155633_SNP [dm6]	T	A	4.465e^-4	0.902	DOWNSTREAM CG12645 INTRON CR44894
3L	18209691	3L_18209691_SNP [dm3] 3L_18216591_SNP [dm6]	G	A	4.468e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26023961	3R_26023961_SNP [dm3] 3R_30198239_SNP [dm6]	C	T	4.470e^-4	0.902	INTRON CG9743
2L	3635546	2L_3635546_SNP [dm3] 2L_3635546_SNP [dm6]	T	C	4.470e^-4	0.902	INTRON for
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	4.470e^-4	0.902	INTRON Smr	TF binding site mE1_TFBS_inv
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	4.471e^-4	0.902	INTRON CG13917
3R	8701543	3R_8701543_SNP [dm3] 3R_12875821_SNP [dm6]	T	G	4.476e^-4	0.902	INTERGENIC
3L	3006724	3L_3006724_SNP [dm3] 3L_3006724_SNP [dm6]	T	C	4.477e^-4	0.902	INTRON FMRFaR
3L	1847857	3L_1847857_SNP [dm3] 3L_1847857_SNP [dm6]	G	A	4.478e^-4	0.902	INTERGENIC
X	11695650	X_11695650_SNP [dm3] X_11801617_SNP [dm6]	A	G	4.479e^-4	0.902	DOWNSTREAM Hsc70-3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20064288	3L_20064288_SNP [dm3] 3L_20071188_SNP [dm6]	C	T	4.480e^-4	0.902	INTRON sNPF-R
3L	5329083	3L_5329083_SNP [dm3] 3L_5335983_SNP [dm6]	A	T	4.489e^-4	0.902	DOWNSTREAM CR45742 INTERGENIC
3L	12471948	3L_12471948_SNP [dm3] 3L_12478848_SNP [dm6]	T	C	4.491e^-4	0.902	INTRON CG10663
3R	16104290	3R_16104290_SNP [dm3] 3R_20278568_SNP [dm6]	G	T	4.494e^-4	0.902	INTRON cic	TF binding site mE1_TFBS_inv
3L	10007634	3L_10007634_SNP [dm3] 3L_10014534_SNP [dm6]	A	C	4.497e^-4	0.902	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	15688565	2R_15688565_SNP [dm3] 2R_19801060_SNP [dm6]	C	T	4.501e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7621802	2L_7621802_SNP [dm3] 2L_7621802_SNP [dm6]	C	T	4.506e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8895135	2L_8895135_SNP [dm3] 2L_8895135_SNP [dm6]	A	T	4.510e^-4	0.902	INTERGENIC
2L	8895708	2L_8895708_SNP [dm3] 2L_8895708_SNP [dm6]	A	G	4.518e^-4	0.902	INTERGENIC
2R	13266034	2R_13266034_DEL [dm3] 2R_17378529_DEL [dm6]	GG	G	4.518e^-4	0.902	UTR_3_PRIME mbl
3R	24727291	3R_24727291_SNP [dm3] 3R_28901569_SNP [dm6]	A	G	4.522e^-4	0.902	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13268231	2L_13268231_SNP [dm3] 2L_13268231_SNP [dm6]	C	T	4.525e^-4	0.902	INTRON CG44085
2R	9977225	2R_9977225_SNP [dm3] 2R_14089720_SNP [dm6]	A	G	4.535e^-4	0.902	UPSTREAM CG42287 INTRON Prosap
3R	24038083	3R_24038083_SNP [dm3] 3R_28212361_SNP [dm6]	G	T	4.537e^-4	0.902	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8896621	2L_8896621_SNP [dm3] 2L_8896621_SNP [dm6]	T	A	4.537e^-4	0.902	INTERGENIC
3R	22822233	3R_22822233_SNP [dm3] 3R_26996511_SNP [dm6]	T	C	4.541e^-4	0.902	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
2L	19215970	2L_19215970_SNP [dm3] 2L_19215970_SNP [dm6]	G	C	4.550e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11206628	3L_11206628_SNP [dm3] 3L_11213528_SNP [dm6]	A	C	4.553e^-4	0.902	SYNONYMOUS_CODING CG7600 UPSTREAM CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17248374	X_17248374_SNP [dm3] X_17354341_SNP [dm6]	C	T	4.556e^-4	0.902	INTERGENIC
X	15795621	X_15795621_SNP [dm3] X_15901588_SNP [dm6]	G	A	4.567e^-4	0.902	SYNONYMOUS_CODING shi
X	14441466	X_14441466_SNP [dm3] X_14547433_SNP [dm6]	C	T	4.568e^-4	0.902	INTERGENIC
3L	17254116	3L_17254116_SNP [dm3] 3L_17261016_SNP [dm6]	G	A	4.572e^-4	0.902	DOWNSTREAM CR43874 INTRON CR43870
X	14353182	X_14353182_SNP [dm3] X_14459149_SNP [dm6]	C	T	4.581e^-4	0.902	INTRON dpr8
2R	15688430	2R_15688430_SNP [dm3] 2R_19800925_SNP [dm6]	G	A	4.582e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2077210	2L_2077210_SNP [dm3] 2L_2077210_SNP [dm6]	T	C	4.591e^-4	0.902	INTRON dpr3	TF binding site mE1_TFBS_HSA
2L	9363552	2L_9363552_SNP [dm3] 2L_9363552_SNP [dm6]	G	A	4.598e^-4	0.902	UPSTREAM CR43404 INTERGENIC
2L	19214969	2L_19214969_SNP [dm3] 2L_19214969_SNP [dm6]	T	A	4.599e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8065792	X_8065792_SNP [dm3] X_8171759_SNP [dm6]	A	G	4.600e^-4	0.902	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_chinmo
3R	26017317	3R_26017317_SNP [dm3] 3R_30191595_SNP [dm6]	A	G	4.607e^-4	0.902	UPSTREAM CG9747 INTERGENIC
2L	7088684	2L_7088684_SNP [dm3] 2L_7088684_SNP [dm6]	A	T	4.607e^-4	0.902	INTERGENIC	transposable element FlyBase
3L	2620623	3L_2620623_SNP [dm3] 3L_2620623_SNP [dm6]	A	G	4.608e^-4	0.902	INTRON Pxn
2L	5734874	2L_5734874_SNP [dm3] 2L_5734874_SNP [dm6]	G	C	4.610e^-4	0.902	INTRON CG11030 & 1 other
2R	8429339	2R_8429339_DEL [dm3] 2R_12541834_DEL [dm6]	CAGAGCAAC	C	4.611e^-4	0.902	INTRON fra
3L	1277967	3L_1277967_SNP [dm3] 3L_1277967_SNP [dm6]	C	G	4.612e^-4	0.902	INTRON CG32333
X	6252110	X_6252110_SNP [dm3] X_6358077_SNP [dm6]	A	T	4.614e^-4	0.902	INTRON kdn
2R	10536181	2R_10536181_SNP [dm3] 2R_14648676_SNP [dm6]	G	A	4.615e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20322205	2L_20322205_SNP [dm3] 2L_20322205_SNP [dm6]	A	T	4.617e^-4	0.902	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7058929	3L_7058929_SNP [dm3] 3L_7065829_SNP [dm6]	A	G	4.621e^-4	0.902	UPSTREAM CG14823 INTRON CG8641
2R	8435621	2R_8435621_SNP [dm3] 2R_12548116_SNP [dm6]	A	C	4.632e^-4	0.902	INTRON fra	TF binding site mE1_TFBS_cad
2R	18362579	2R_18362579_SNP [dm3] 2R_22475074_SNP [dm6]	A	G	4.644e^-4	0.902	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15183265	2R_15183265_DEL [dm3] 2R_19295760_DEL [dm6]	AAACCATTAAAAGCTAGC...	A	4.645e^-4	0.902	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8054724	X_8054724_SNP [dm3] X_8160691_SNP [dm6]	T	C	4.650e^-4	0.902	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
2L	3635465	2L_3635465_SNP [dm3] 2L_3635465_SNP [dm6]	A	G	4.660e^-4	0.902	INTRON for
2L	7245305	2L_7245305_DEL [dm3] 2L_7245305_DEL [dm6]	TT	T	4.668e^-4	0.902	UTR_5_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2609386	3L_2609386_SNP [dm3] 3L_2609386_SNP [dm6]	G	T	4.671e^-4	0.902	DOWNSTREAM Pxn INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	955235	2R_955235_SNP [dm3] 2R_5067730_SNP [dm6]	G	T	4.672e^-4	0.902	INTRON TpnC41C
2R	1033261	2R_1033261_DEL [dm3] 2R_5145756_DEL [dm6]	AA	A	4.680e^-4	0.902	INTRON Atf6
2L	915211	2L_915211_SNP [dm3] 2L_915211_SNP [dm6]	A	G	4.680e^-4	0.902	NON_SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	24190553	3R_24190553_SNP [dm3] 3R_28364831_SNP [dm6]	A	C	4.682e^-4	0.902	INTERGENIC
X	6283846	X_6283846_INS [dm3] X_6389813_INS [dm6]	G	GAG	4.689e^-4	0.902	INTERGENIC
3R	26019640	3R_26019640_SNP [dm3] 3R_30193918_SNP [dm6]	C	T	4.703e^-4	0.902	DOWNSTREAM CG15531 INTERGENIC
3L	12879610	3L_12879610_SNP [dm3] 3L_12886510_SNP [dm6]	A	G	4.707e^-4	0.902	NON_SYNONYMOUS_CODING CG14120
X	8733941	X_8733941_SNP [dm3] X_8839908_SNP [dm6]	G	A	4.707e^-4	0.902	INTRON CG12075
X	3104130	X_3104130_SNP [dm3] X_3210097_SNP [dm6]	A	C	4.708e^-4	0.902	INTRON dnc
2L	20957041	2L_20957041_SNP [dm3] 2L_20957041_SNP [dm6]	C	T	4.717e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19968271	3L_19968271_SNP [dm3] 3L_19975171_SNP [dm6]	T	C	4.719e^-4	0.902	INTRON Ac76E
3L	16282377	3L_16282377_SNP [dm3] 3L_16289277_SNP [dm6]	T	A	4.734e^-4	0.902	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
2R	17568804	2R_17568804_SNP [dm3] 2R_21681299_SNP [dm6]	A	C	4.739e^-4	0.902	INTRON CG30263
3R	26017837	3R_26017837_SNP [dm3] 3R_30192115_SNP [dm6]	G	C	4.739e^-4	0.902	UPSTREAM CG9747 INTERGENIC
2L	8331177	2L_8331177_SNP [dm3] 2L_8331177_SNP [dm6]	G	A	4.748e^-4	0.902	INTRON CG14275
2L	2077283	2L_2077283_SNP [dm3] 2L_2077283_SNP [dm6]	T	C	4.761e^-4	0.902	INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6014869	2L_6014869_SNP [dm3] 2L_6014869_SNP [dm6]	T	C	4.764e^-4	0.902	INTRON H2.0
2L	8895705	2L_8895705_SNP [dm3] 2L_8895705_SNP [dm6]	T	C	4.774e^-4	0.902	INTERGENIC
2L	17547948	2L_17547948_SNP [dm3] 2L_17547948_SNP [dm6]	T	C	4.783e^-4	0.902	DOWNSTREAM CR45697 INTERGENIC
3L	8905474	3L_8905474_SNP [dm3] 3L_8912374_SNP [dm6]	C	A	4.787e^-4	0.902	START_GAINED mfr UTR_5_PRIME mfr UPSTREAM Tsp66E & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8905484	3L_8905484_SNP [dm3] 3L_8912384_SNP [dm6]	A	C	4.787e^-4	0.902	UTR_5_PRIME mfr UPSTREAM Tsp66E & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16615370	2L_16615370_SNP [dm3] 2L_16615370_SNP [dm6]	C	T	4.790e^-4	0.902	INTRON CG42389
X	16765268	X_16765268_SNP [dm3] X_16871235_SNP [dm6]	A	G	4.791e^-4	0.902	INTRON CG13003
2L	16166250	2L_16166250_SNP [dm3] 2L_16166250_SNP [dm6]	G	A	4.797e^-4	0.902	UTR_5_PRIME Ca-alpha1D
2L	13153640	2L_13153640_SNP [dm3] 2L_13153640_SNP [dm6]	G	A	4.800e^-4	0.902	INTERGENIC
2L	669309	2L_669309_INS [dm3] 2L_669309_INS [dm6]	A	AG	4.804e^-4	0.902	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	13753410	2R_13753410_INS [dm3] 2R_17865905_INS [dm6]	T	TT	4.809e^-4	0.902	UTR_5_PRIME thr DOWNSTREAM Mapmodulin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	10441110	3L_10441110_SNP [dm3] 3L_10448010_SNP [dm6]	C	T	4.814e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4614934	3L_4614934_SNP [dm3] 3L_4614934_SNP [dm6]	C	T	4.815e^-4	0.902	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9269646	2L_9269646_SNP [dm3] 2L_9269646_SNP [dm6]	T	C	4.815e^-4	0.902	INTRON Ggamma30A
2R	17793800	2R_17793800_SNP [dm3] 2R_21906295_SNP [dm6]	C	G	4.819e^-4	0.902	INTRON Fili
3L	14959675	3L_14959675_SNP [dm3] 3L_14966575_SNP [dm6]	C	A	4.829e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10750428	2L_10750428_SNP [dm3] 2L_10750428_SNP [dm6]	A	C	4.850e^-4	0.902	INTRON CG17124
2L	8881830	2L_8881830_SNP [dm3] 2L_8881830_SNP [dm6]	T	A	4.854e^-4	0.902	INTERGENIC
3R	22814532	3R_22814532_SNP [dm3] 3R_26988810_SNP [dm6]	A	G	4.856e^-4	0.902	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	12013583	2L_12013583_SNP [dm3] 2L_12013583_SNP [dm6]	T	C	4.858e^-4	0.902	DOWNSTREAM CG6734 EXON CR44588
2R	17351007	2R_17351007_SNP [dm3] 2R_21463502_SNP [dm6]	A	G	4.892e^-4	0.902	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19215034	2L_19215034_SNP [dm3] 2L_19215034_SNP [dm6]	C	A	4.892e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	632990	3L_632990_SNP [dm3] 3L_632990_SNP [dm6]	C	T	4.893e^-4	0.902	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19776006	3R_19776006_SNP [dm3] 3R_23950284_SNP [dm6]	C	T	4.893e^-4	0.902	INTERGENIC
X	9971828	X_9971828_SNP [dm3] X_10077795_SNP [dm6]	T	A	4.894e^-4	0.902	INTRON ZAP3
3L	5474372	3L_5474372_SNP [dm3] 3L_5481272_SNP [dm6]	G	C	4.895e^-4	0.902	SYNONYMOUS_CODING CG4835
3L	12902441	3L_12902441_SNP [dm3] 3L_12909341_SNP [dm6]	G	A	4.895e^-4	0.902	INTERGENIC
2L	9926696	2L_9926696_SNP [dm3] 2L_9926696_SNP [dm6]	G	A	4.903e^-4	0.902	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
2R	1219617	2R_1219617_SNP [dm3] 2R_5332112_SNP [dm6]	A	T	4.906e^-4	0.902	INTERGENIC	transposable element FlyBase
3R	22849076	3R_22849076_DEL [dm3] 3R_27023354_DEL [dm6]	CCAT	C	4.917e^-4	0.902	UPSTREAM CG6277 INTRON RYa-R
3L	14073038	3L_14073038_SNP [dm3] 3L_14079938_SNP [dm6]	A	G	4.919e^-4	0.902	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
2L	12148366	2L_12148366_SNP [dm3] 2L_12148366_SNP [dm6]	T	A	4.920e^-4	0.902	INTRON CG31760
X	7369802	X_7369802_SNP [dm3] X_7475769_SNP [dm6]	T	C	4.927e^-4	0.902	INTERGENIC
2L	11412639	2L_11412639_SNP [dm3] 2L_11412639_SNP [dm6]	G	A	4.947e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
X	8726888	X_8726888_SNP [dm3] X_8832855_SNP [dm6]	T	A	4.950e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5118974	2L_5118974_SNP [dm3] 2L_5118974_SNP [dm6]	G	A	4.950e^-4	0.902	INTRON Msp300
2L	9918419	2L_9918419_DEL [dm3] 2L_9918419_DEL [dm6]	TT	T	4.951e^-4	0.902	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3276769	3L_3276769_SNP [dm3] 3L_3276769_SNP [dm6]	G	C	4.952e^-4	0.902	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
X	10907907	X_10907907_DEL [dm3] X_11013874_DEL [dm6]	GGGAAGAG	G	4.954e^-4	0.902	INTRON CG42339
3R	18621721	3R_18621721_SNP [dm3] 3R_22795999_SNP [dm6]	G	A	4.954e^-4	0.902	INTERGENIC
X	20342576	X_20342576_INS [dm3] X_20471549_INS [dm6]	G	GTAG	4.960e^-4	0.902	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2L	2694092	2L_2694092_SNP [dm3] 2L_2694092_SNP [dm6]	T	C	4.972e^-4	0.902	INTRON CG31690
2L	2276236	2L_2276236_SNP [dm3] 2L_2276236_SNP [dm6]	C	T	4.983e^-4	0.902	INTRON CR43753 EXON CR43753
3R	15426599	3R_15426599_SNP [dm3] 3R_19600877_SNP [dm6]	G	A	4.984e^-4	0.902	SPLICE_SITE_REGION CG7333 INTRON CG7333

By genomic position
Variant impact
Gene name

pc_Surv_PRettgeriADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results