DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.215e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.07674

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

236 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9626545	2R_9626545_SNP [dm3] 2R_13739040_SNP [dm6]	T	G	2.943e^-4	0.893	INTRON fas
3L	13222507	3L_13222507_SNP [dm3] 3L_13229407_SNP [dm6]	T	C	2.943e^-4	0.893	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	18122988	X_18122988_SNP [dm3] X_18228955_SNP [dm6]	G	T	2.943e^-4	0.893	UPSTREAM CR45622 INTERGENIC
X	18129270	X_18129270_SNP [dm3] X_18235237_SNP [dm6]	T	C	2.943e^-4	0.893	INTERGENIC
X	6601533	X_6601533_SNP [dm3] X_6707500_SNP [dm6]	A	T	2.943e^-4	0.893	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10914352	2L_10914352_SNP [dm3] 2L_10914352_SNP [dm6]	G	A	3.107e^-4	0.893	INTERGENIC
3L	6735735	3L_6735735_SNP [dm3] 3L_6742635_SNP [dm6]	G	T	3.107e^-4	0.893	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5197510	X_5197510_SNP [dm3] X_5303477_SNP [dm6]	G	A	3.561e^-4	0.893	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG42749 INTRON CG42749
2R	9476357	2R_9476357_SNP [dm3] 2R_13588852_SNP [dm6]	G	T	3.877e^-4	0.893	INTRON CG6191 & 1 other
2R	9476380	2R_9476380_SNP [dm3] 2R_13588875_SNP [dm6]	T	C	3.877e^-4	0.893	INTRON CG6191 & 1 other
3L	17631270	3L_17631270_SNP [dm3] 3L_17638170_SNP [dm6]	G	A	3.877e^-4	0.893	UTR_3_PRIME Pep DOWNSTREAM CG7497	TF binding site mE1_TFBS_cad
2L	10926966	2L_10926966_SNP [dm3] 2L_10926966_SNP [dm6]	T	A	4.029e^-4	0.893	INTRON dpr2
2L	10926968	2L_10926968_SNP [dm3] 2L_10926968_SNP [dm6]	A	T	4.029e^-4	0.893	INTRON dpr2
2L	10926973	2L_10926973_SNP [dm3] 2L_10926973_SNP [dm6]	T	G	4.029e^-4	0.893	INTRON dpr2
2L	12409752	2L_12409752_SNP [dm3] 2L_12409752_SNP [dm6]	G	C	4.029e^-4	0.893	INTRON vir-1
2L	18571217	2L_18571217_SNP [dm3] 2L_18571217_SNP [dm6]	A	T	4.029e^-4	0.893	INTRON Pde11
2L	20264867	2L_20264867_SNP [dm3] 2L_20264867_SNP [dm6]	G	T	4.029e^-4	0.893	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20264870	2L_20264870_SNP [dm3] 2L_20264870_SNP [dm6]	G	A	4.029e^-4	0.893	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20385993	2L_20385993_SNP [dm3] 2L_20385993_SNP [dm6]	C	G	4.029e^-4	0.893	UTR_3_PRIME CG10947 DOWNSTREAM CG10947	TF binding site mE1_TFBS_cad
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	4.029e^-4	0.893	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	4.029e^-4	0.893	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17027687	2R_17027687_SNP [dm3] 2R_21140182_SNP [dm6]	A	G	4.029e^-4	0.893	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8411479	2R_8411479_SNP [dm3] 2R_12523974_SNP [dm6]	T	C	4.029e^-4	0.893	INTERGENIC
2R	8411480	2R_8411480_SNP [dm3] 2R_12523975_SNP [dm6]	C	G	4.029e^-4	0.893	INTERGENIC
2R	8501870	2R_8501870_SNP [dm3] 2R_12614365_SNP [dm6]	C	G	4.029e^-4	0.893	INTRON Galphaq & 1 other
2R	8736316	2R_8736316_SNP [dm3] 2R_12848811_SNP [dm6]	T	A	4.029e^-4	0.893	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
2R	8736320	2R_8736320_SNP [dm3] 2R_12848815_SNP [dm6]	G	A	4.029e^-4	0.893	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
2R	8736325	2R_8736325_SNP [dm3] 2R_12848820_SNP [dm6]	A	C	4.029e^-4	0.893	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
2R	8736358	2R_8736358_SNP [dm3] 2R_12848853_SNP [dm6]	C	T	4.029e^-4	0.893	NON_SYNONYMOUS_CODING CG30486 UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
3L	10741645	3L_10741645_SNP [dm3] 3L_10748545_SNP [dm6]	T	C	4.029e^-4	0.893	INTERGENIC
3L	10741695	3L_10741695_SNP [dm3] 3L_10748595_SNP [dm6]	G	A	4.029e^-4	0.893	INTERGENIC
3L	17631303	3L_17631303_SNP [dm3] 3L_17638203_SNP [dm6]	T	G	4.029e^-4	0.893	UTR_3_PRIME Pep DOWNSTREAM CG7497	TF binding site mE1_TFBS_cad
3L	2313691	3L_2313691_SNP [dm3] 3L_2313691_SNP [dm6]	G	A	4.029e^-4	0.893	INTERGENIC
3L	2313717	3L_2313717_SNP [dm3] 3L_2313717_SNP [dm6]	C	T	4.029e^-4	0.893	INTERGENIC
3L	2482976	3L_2482976_SNP [dm3] 3L_2482976_SNP [dm6]	T	G	4.029e^-4	0.893	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5718868	3L_5718868_SNP [dm3] 3L_5725768_SNP [dm6]	A	T	4.029e^-4	0.893	INTRON sif
X	18169425	X_18169425_SNP [dm3] X_18275392_SNP [dm6]	C	T	4.029e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19935527	X_19935527_SNP [dm3] X_20041494_SNP [dm6]	T	G	4.029e^-4	0.893	INTRON Dop2R
X	19935548	X_19935548_SNP [dm3] X_20041515_SNP [dm6]	G	A	4.029e^-4	0.893	INTRON Dop2R
X	19935579	X_19935579_SNP [dm3] X_20041546_SNP [dm6]	C	T	4.029e^-4	0.893	INTRON Dop2R
X	21329547	X_21329547_SNP [dm3] X_21458520_SNP [dm6]	A	T	4.029e^-4	0.893	UPSTREAM CG42343 INTERGENIC
X	21335717	X_21335717_SNP [dm3] X_21464690_SNP [dm6]	A	T	4.029e^-4	0.893	INTERGENIC
X	5706358	X_5706358_SNP [dm3] X_5812325_SNP [dm6]	A	G	4.029e^-4	0.893	SYNONYMOUS_CODING CG44329
X	5706376	X_5706376_SNP [dm3] X_5812343_SNP [dm6]	G	C	4.029e^-4	0.893	SYNONYMOUS_CODING CG44329
3L	2035099	3L_2035099_SNP [dm3] 3L_2035099_SNP [dm6]	T	A	4.405e^-4	0.893	INTERGENIC
3L	5719440	3L_5719440_SNP [dm3] 3L_5726340_SNP [dm6]	G	A	4.405e^-4	0.893	INTRON sif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9870418	3L_9870418_SNP [dm3] 3L_9877318_SNP [dm6]	A	G	4.598e^-4	0.893	DOWNSTREAM CR45406 INTERGENIC
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	4.598e^-4	0.893	DOWNSTREAM CR45406 INTERGENIC
3L	2155820	3L_2155820_INS [dm3] 3L_2155820_INS [dm6]	A	AGGA	5.156e^-4	0.893	INTRON CG15822
X	18169509	X_18169509_SNP [dm3] X_18275476_SNP [dm6]	A	T	5.156e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11617896	2L_11617896_SNP [dm3] 2L_11617896_SNP [dm6]	G	T	5.248e^-4	0.893	INTRON kek2
2R	8736687	2R_8736687_SNP [dm3] 2R_12849182_SNP [dm6]	A	T	5.248e^-4	0.893	UPSTREAM CG30486 DOWNSTREAM CG17574 EXON CR45468
2R	9466257	2R_9466257_SNP [dm3] 2R_13578752_SNP [dm6]	A	G	5.248e^-4	0.893	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21856291	3R_21856291_SNP [dm3] 3R_26030569_SNP [dm6]	T	C	5.248e^-4	0.893	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	12677075	2R_12677075_SNP [dm3] 2R_16789570_SNP [dm6]	A	G	5.438e^-4	0.893	SYNONYMOUS_CODING CG5522
3L	10741808	3L_10741808_SNP [dm3] 3L_10748708_SNP [dm6]	A	T	5.523e^-4	0.893	INTERGENIC
2L	11942092	2L_11942092_SNP [dm3] 2L_11942092_SNP [dm6]	G	A	5.549e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs
2L	13598746	2L_13598746_SNP [dm3] 2L_13598746_SNP [dm6]	T	C	5.549e^-4	0.893	INTRON kuz
2L	14428833	2L_14428833_SNP [dm3] 2L_14428833_SNP [dm6]	A	C	5.549e^-4	0.893	EXON CR44732	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15079196	2L_15079196_SNP [dm3] 2L_15079196_SNP [dm6]	T	G	5.549e^-4	0.893	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15079208	2L_15079208_SNP [dm3] 2L_15079208_SNP [dm6]	C	T	5.549e^-4	0.893	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15508400	2L_15508400_SNP [dm3] 2L_15508400_SNP [dm6]	C	T	5.549e^-4	0.893	INTERGENIC
2L	17942449	2L_17942449_SNP [dm3] 2L_17942449_SNP [dm6]	A	C	5.549e^-4	0.893	INTERGENIC
2L	17942499	2L_17942499_SNP [dm3] 2L_17942499_SNP [dm6]	C	G	5.549e^-4	0.893	INTERGENIC
2L	17942546	2L_17942546_SNP [dm3] 2L_17942546_SNP [dm6]	T	A	5.549e^-4	0.893	INTERGENIC
2L	17948724	2L_17948724_SNP [dm3] 2L_17948724_SNP [dm6]	C	T	5.549e^-4	0.893	EXON CR44398
2L	21897952	2L_21897952_SNP [dm3] 2L_21897952_SNP [dm6]	T	C	5.549e^-4	0.893	NON_SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22096002	2L_22096002_SNP [dm3] 2L_22096002_SNP [dm6]	T	C	5.549e^-4	0.893	INTERGENIC
2R	16241021	2R_16241021_SNP [dm3] 2R_20353516_SNP [dm6]	T	A	5.549e^-4	0.893	DOWNSTREAM CG11192 INTERGENIC
2R	2963586	2R_2963586_SNP [dm3] 2R_7076081_SNP [dm6]	G	A	5.549e^-4	0.893	INTERGENIC
2R	6496924	2R_6496924_SNP [dm3] 2R_10609419_SNP [dm6]	A	T	5.549e^-4	0.893	INTRON psq
2R	7058637	2R_7058637_SNP [dm3] 2R_11171132_SNP [dm6]	T	G	5.549e^-4	0.893	INTRON shn & 1 other
2R	8735866	2R_8735866_SNP [dm3] 2R_12848361_SNP [dm6]	T	C	5.549e^-4	0.893	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
2R	8736445	2R_8736445_SNP [dm3] 2R_12848940_SNP [dm6]	A	G	5.549e^-4	0.893	NON_SYNONYMOUS_CODING CG30486 UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	8736456	2R_8736456_SNP [dm3] 2R_12848951_SNP [dm6]	A	T	5.549e^-4	0.893	SYNONYMOUS_CODING CG30486 UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	8736715	2R_8736715_SNP [dm3] 2R_12849210_SNP [dm6]	T	A	5.549e^-4	0.893	UPSTREAM CG30486 DOWNSTREAM CG17574 EXON CR45468
2R	9476269	2R_9476269_SNP [dm3] 2R_13588764_SNP [dm6]	G	A	5.549e^-4	0.893	INTRON CG6191 & 1 other
2R	9476291	2R_9476291_SNP [dm3] 2R_13588786_SNP [dm6]	T	C	5.549e^-4	0.893	INTRON CG6191 & 1 other
3L	12524912	3L_12524912_INS [dm3] 3L_12531812_INS [dm6]	A	AC	5.549e^-4	0.893	INTRON Tsf2	TF binding site mE1_TFBS_sens
3L	12524915	3L_12524915_SNP [dm3] 3L_12531815_SNP [dm6]	G	A	5.549e^-4	0.893	INTRON Tsf2	TF binding site mE1_TFBS_sens
3L	12524924	3L_12524924_SNP [dm3] 3L_12531824_SNP [dm6]	A	G	5.549e^-4	0.893	INTRON Tsf2	TF binding site mE1_TFBS_sens
3L	12524931	3L_12524931_INS [dm3] 3L_12531831_INS [dm6]	A	AA	5.549e^-4	0.893	INTRON Tsf2	TF binding site mE1_TFBS_sens
3L	12524938	3L_12524938_SNP [dm3] 3L_12531838_SNP [dm6]	C	G	5.549e^-4	0.893	INTRON Tsf2	TF binding site mE1_TFBS_sens
3L	12666117	3L_12666117_SNP [dm3] 3L_12673017_SNP [dm6]	A	G	5.549e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666198	3L_12666198_SNP [dm3] 3L_12673098_SNP [dm6]	A	G	5.549e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666276	3L_12666276_SNP [dm3] 3L_12673176_SNP [dm6]	T	G	5.549e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666282	3L_12666282_SNP [dm3] 3L_12673182_SNP [dm6]	T	C	5.549e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666284	3L_12666284_SNP [dm3] 3L_12673184_SNP [dm6]	G	A	5.549e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8507392	3L_8507392_SNP [dm3] 3L_8514292_SNP [dm6]	T	C	5.549e^-4	0.893	SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8508380	3L_8508380_SNP [dm3] 3L_8515280_SNP [dm6]	A	G	5.549e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8508384	3L_8508384_SNP [dm3] 3L_8515284_SNP [dm6]	G	A	5.549e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8508387	3L_8508387_SNP [dm3] 3L_8515287_SNP [dm6]	T	C	5.549e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8508395	3L_8508395_SNP [dm3] 3L_8515295_SNP [dm6]	C	T	5.549e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	8508400	3L_8508400_SNP [dm3] 3L_8515300_SNP [dm6]	T	C	5.549e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	23000598	3R_23000598_SNP [dm3] 3R_27174876_SNP [dm6]	G	A	5.549e^-4	0.893	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
3R	23000604	3R_23000604_SNP [dm3] 3R_27174882_SNP [dm6]	A	G	5.549e^-4	0.893	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
3R	23000628	3R_23000628_SNP [dm3] 3R_27174906_SNP [dm6]	A	G	5.549e^-4	0.893	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
X	10929526	X_10929526_SNP [dm3] X_11035493_SNP [dm6]	T	C	5.549e^-4	0.893	DOWNSTREAM CG42339 INTRON CG42339
X	11830572	X_11830572_SNP [dm3] X_11936539_SNP [dm6]	A	C	5.549e^-4	0.893	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11830621	X_11830621_SNP [dm3] X_11936588_SNP [dm6]	T	C	5.549e^-4	0.893	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11830641	X_11830641_SNP [dm3] X_11936608_SNP [dm6]	C	T	5.549e^-4	0.893	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11830645	X_11830645_DEL [dm3] X_11936612_DEL [dm6]	TTGATGCTTGCATATATCCC...	CTGATGCAGT	5.549e^-4	0.893	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5333736	X_5333736_SNP [dm3] X_5439703_SNP [dm6]	G	T	5.549e^-4	0.893	INTERGENIC
3R	25168819	3R_25168819_SNP [dm3] 3R_29343097_SNP [dm6]	C	T	6.255e^-4	0.893	INTERGENIC
2L	10603978	2L_10603978_SNP [dm3] 2L_10603978_SNP [dm6]	A	T	6.489e^-4	0.893	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	14552997	2L_14552997_SNP [dm3] 2L_14552997_SNP [dm6]	C	T	6.489e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	14555400	2L_14555400_INS [dm3] 2L_14555400_INS [dm6]	A	ATGCATAATA	6.489e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	14555430	2L_14555430_SNP [dm3] 2L_14555430_SNP [dm6]	T	G	6.489e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1787658	2L_1787658_SNP [dm3] 2L_1787658_SNP [dm6]	C	T	6.489e^-4	0.893	INTERGENIC
2L	18071280	2L_18071280_SNP [dm3] 2L_18071280_SNP [dm6]	A	G	6.489e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4250931	2L_4250931_SNP [dm3] 2L_4250931_SNP [dm6]	A	G	6.489e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4250938	2L_4250938_SNP [dm3] 2L_4250938_SNP [dm6]	T	C	6.489e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12509724	2R_12509724_SNP [dm3] 2R_16622219_SNP [dm6]	T	A	6.489e^-4	0.893	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	13389106	2R_13389106_SNP [dm3] 2R_17501601_SNP [dm6]	A	G	6.489e^-4	0.893	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15274657	2R_15274657_SNP [dm3] 2R_19387152_SNP [dm6]	T	G	6.489e^-4	0.893	INTRON CG10081
2R	2773594	2R_2773594_DEL [dm3] 2R_6886089_DEL [dm6]	AA	A	6.489e^-4	0.893	UPSTREAM Spn42De INTRON Spn42De	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6746309	2R_6746309_SNP [dm3] 2R_10858804_SNP [dm6]	T	C	6.489e^-4	0.893	UPSTREAM CR44302 INTRON CG30015
2R	8377509	2R_8377509_SNP [dm3] 2R_12490004_SNP [dm6]	T	C	6.489e^-4	0.893	SYNONYMOUS_CODING fdl
2R	8377515	2R_8377515_SNP [dm3] 2R_12490010_SNP [dm6]	C	G	6.489e^-4	0.893	SYNONYMOUS_CODING fdl
3L	11267325	3L_11267325_SNP [dm3] 3L_11274225_SNP [dm6]	T	G	6.489e^-4	0.893	EXON CR44720	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12939232	3L_12939232_SNP [dm3] 3L_12946132_SNP [dm6]	C	T	6.489e^-4	0.893	INTERGENIC
3L	13044344	3L_13044344_SNP [dm3] 3L_13051244_SNP [dm6]	T	C	6.489e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	15306225	3L_15306225_SNP [dm3] 3L_15313125_SNP [dm6]	G	T	6.489e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4598266	3L_4598266_SNP [dm3] 3L_4598266_SNP [dm6]	A	G	6.489e^-4	0.893	SYNONYMOUS_CODING Src64B
3L	4598278	3L_4598278_SNP [dm3] 3L_4598278_SNP [dm6]	A	G	6.489e^-4	0.893	SYNONYMOUS_CODING Src64B
3L	792990	3L_792990_SNP [dm3] 3L_792990_SNP [dm6]	C	A	6.489e^-4	0.893	INTERGENIC
3L	9304245	3L_9304245_SNP [dm3] 3L_9311145_SNP [dm6]	G	A	6.489e^-4	0.893	INTERGENIC
3L	9304271	3L_9304271_SNP [dm3] 3L_9311171_SNP [dm6]	T	A	6.489e^-4	0.893	INTERGENIC
3L	9467655	3L_9467655_SNP [dm3] 3L_9474555_SNP [dm6]	C	T	6.489e^-4	0.893	UTR_3_PRIME CG44838 DOWNSTREAM Uch-L5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21881072	3R_21881072_SNP [dm3] 3R_26055350_SNP [dm6]	A	G	6.489e^-4	0.893	UTR_5_PRIME Dak1 DOWNSTREAM Sld5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23018623	3R_23018623_SNP [dm3] 3R_27192901_SNP [dm6]	G	T	6.489e^-4	0.893	INTRON Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	26964704	3R_26964704_SNP [dm3] 3R_31138982_SNP [dm6]	T	C	6.489e^-4	0.893	INTRON Gycbeta100B
3R	26964743	3R_26964743_SNP [dm3] 3R_31139021_SNP [dm6]	G	A	6.489e^-4	0.893	INTRON Gycbeta100B
X	16307315	X_16307315_SNP [dm3] X_16413282_SNP [dm6]	G	T	6.489e^-4	0.893	SYNONYMOUS_CODING CG4301	TF binding site mE1_TFBS_chinmo
X	16307424	X_16307424_SNP [dm3] X_16413391_SNP [dm6]	T	C	6.489e^-4	0.893	SYNONYMOUS_CODING CG4301
X	16307435	X_16307435_SNP [dm3] X_16413402_SNP [dm6]	C	T	6.489e^-4	0.893	SYNONYMOUS_CODING CG4301
X	20570392	X_20570392_SNP [dm3] X_20699365_SNP [dm6]	C	A	6.489e^-4	0.893	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	11830583	X_11830583_SNP [dm3] X_11936550_SNP [dm6]	A	C	6.515e^-4	0.893	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11083661	2L_11083661_SNP [dm3] 2L_11083661_SNP [dm6]	G	C	6.540e^-4	0.893	UTR_3_PRIME AstCC
2L	11292668	2L_11292668_SNP [dm3] 2L_11292668_SNP [dm6]	T	C	6.540e^-4	0.893	INTERGENIC
2L	11292670	2L_11292670_SNP [dm3] 2L_11292670_SNP [dm6]	G	T	6.540e^-4	0.893	INTERGENIC
2L	11292708	2L_11292708_SNP [dm3] 2L_11292708_SNP [dm6]	A	G	6.540e^-4	0.893	INTERGENIC
2L	14139088	2L_14139088_SNP [dm3] 2L_14139088_SNP [dm6]	A	G	6.540e^-4	0.893	INTRON CG17341
2L	16234943	2L_16234943_SNP [dm3] 2L_16234943_SNP [dm6]	T	C	6.540e^-4	0.893	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19364501	2L_19364501_SNP [dm3] 2L_19364501_SNP [dm6]	G	A	6.540e^-4	0.893	SYNONYMOUS_CODING CG13086
2L	22037784	2L_22037784_SNP [dm3] 2L_22037784_SNP [dm6]	G	A	6.540e^-4	0.893	UPSTREAM CG41434 INTERGENIC
2L	5638824	2L_5638824_SNP [dm3] 2L_5638824_SNP [dm6]	T	A	6.540e^-4	0.893	INTRON CG31646
2L	5638838	2L_5638838_SNP [dm3] 2L_5638838_SNP [dm6]	C	A	6.540e^-4	0.893	INTRON CG31646
2R	12677224	2R_12677224_SNP [dm3] 2R_16789719_SNP [dm6]	C	T	6.540e^-4	0.893	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16608250	2R_16608250_SNP [dm3] 2R_20720745_SNP [dm6]	G	T	6.540e^-4	0.893	INTRON dpr
2R	20510806	2R_20510806_SNP [dm3] 2R_24623283_SNP [dm6]	A	C	6.540e^-4	0.893	INTRON CG13594
2R	2794608	2R_2794608_SNP [dm3] 2R_6907103_SNP [dm6]	T	A	6.540e^-4	0.893	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2R	7200663	2R_7200663_SNP [dm3] 2R_11313158_SNP [dm6]	G	C	6.540e^-4	0.893	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	394147	3L_394147_SNP [dm3] 3L_394147_SNP [dm6]	T	C	6.540e^-4	0.893	UPSTREAM CR45378 EXON CR43969
3L	9304313	3L_9304313_SNP [dm3] 3L_9311213_SNP [dm6]	T	G	6.540e^-4	0.893	INTERGENIC
3L	9304920	3L_9304920_SNP [dm3] 3L_9311820_SNP [dm6]	A	C	6.540e^-4	0.893	INTERGENIC
3R	6627733	3R_6627733_SNP [dm3] 3R_10802011_SNP [dm6]	A	G	6.540e^-4	0.893	NON_SYNONYMOUS_CODING CG14692
3R	6627814	3R_6627814_SNP [dm3] 3R_10802092_SNP [dm6]	T	C	6.540e^-4	0.893	NON_SYNONYMOUS_CODING CG14692
3R	6627866	3R_6627866_SNP [dm3] 3R_10802144_SNP [dm6]	T	A	6.540e^-4	0.893	NON_SYNONYMOUS_CODING CG14692
2L	4374793	2L_4374793_SNP [dm3] 2L_4374793_SNP [dm6]	T	A	6.799e^-4	0.893	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	20058142	2R_20058142_SNP [dm3] 2R_24170619_SNP [dm6]	C	A	6.799e^-4	0.893	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10725293	3L_10725293_SNP [dm3] 3L_10732193_SNP [dm6]	C	T	6.799e^-4	0.893	INTERGENIC
3L	18782932	3L_18782932_SNP [dm3] 3L_18789832_SNP [dm6]	A	T	6.799e^-4	0.893	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
3L	8278244	3L_8278244_SNP [dm3] 3L_8285144_SNP [dm6]	G	T	6.799e^-4	0.893	INTRON cert	TF binding site mE1_TFBS_Trl
2R	17425393	2R_17425393_SNP [dm3] 2R_21537888_SNP [dm6]	A	T	7.551e^-4	0.893	SYNONYMOUS_CODING CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15202080	3L_15202080_DEL [dm3] 3L_15208980_DEL [dm6]	TT	T	7.551e^-4	0.893	DOWNSTREAM CG6888 INTERGENIC
X	12436971	X_12436971_INS [dm3] X_12542938_INS [dm6]	C	CCGGAGTC	7.618e^-4	0.893	INTRON CG43921
3L	8508371	3L_8508371_SNP [dm3] 3L_8515271_SNP [dm6]	A	T	7.998e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8508373	3L_8508373_SNP [dm3] 3L_8515273_SNP [dm6]	C	A	7.998e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14371533	3L_14371533_INS [dm3] 3L_14378433_INS [dm6]	C	CC	8.337e^-4	0.893	INTERGENIC
3L	8508374	3L_8508374_SNP [dm3] 3L_8515274_SNP [dm6]	A	G	8.337e^-4	0.893	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	8.401e^-4	0.893	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	8.401e^-4	0.893	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2035141	3L_2035141_SNP [dm3] 3L_2035141_SNP [dm6]	C	A	8.401e^-4	0.893	INTERGENIC
3R	26046650	3R_26046650_SNP [dm3] 3R_30220928_SNP [dm6]	T	A	8.401e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17955712	2L_17955712_SNP [dm3] 2L_17955712_SNP [dm6]	T	A	8.591e^-4	0.893	INTERGENIC
2L	7331049	2L_7331049_SNP [dm3] 2L_7331049_SNP [dm6]	T	C	8.830e^-4	0.893	INTERGENIC
2L	19196939	2L_19196939_SNP [dm3] 2L_19196939_SNP [dm6]	G	C	8.854e^-4	0.893	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19341250	2L_19341250_SNP [dm3] 2L_19341250_SNP [dm6]	G	A	8.854e^-4	0.893	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7095949	2L_7095949_SNP [dm3] 2L_7095949_SNP [dm6]	G	C	8.854e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7096036	2L_7096036_SNP [dm3] 2L_7096036_SNP [dm6]	T	C	8.854e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18630897	2R_18630897_SNP [dm3] 2R_22743392_SNP [dm6]	T	C	8.854e^-4	0.893	UTR_3_PRIME CG42260 DOWNSTREAM CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18630899	2R_18630899_SNP [dm3] 2R_22743394_SNP [dm6]	C	T	8.854e^-4	0.893	UTR_3_PRIME CG42260 DOWNSTREAM CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18630901	2R_18630901_SNP [dm3] 2R_22743396_SNP [dm6]	C	A	8.854e^-4	0.893	UTR_3_PRIME CG42260 DOWNSTREAM CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2942698	2R_2942698_SNP [dm3] 2R_7055193_SNP [dm6]	T	A	8.854e^-4	0.893	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42En INTRON Tsp42Eo
2R	2987178	2R_2987178_SNP [dm3] 2R_7099673_SNP [dm6]	G	A	8.854e^-4	0.893	INTRON esn
2R	9885899	2R_9885899_SNP [dm3] 2R_13998394_SNP [dm6]	T	C	8.854e^-4	0.893	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9885985	2R_9885985_SNP [dm3] 2R_13998480_SNP [dm6]	A	T	8.854e^-4	0.893	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886008	2R_9886008_SNP [dm3] 2R_13998503_SNP [dm6]	G	A	8.854e^-4	0.893	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886044	2R_9886044_SNP [dm3] 2R_13998539_SNP [dm6]	A	C	8.854e^-4	0.893	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	10433267	3L_10433267_SNP [dm3] 3L_10440167_SNP [dm6]	T	G	8.854e^-4	0.893	INTERGENIC
3L	13396409	3L_13396409_SNP [dm3] 3L_13403309_SNP [dm6]	A	T	8.854e^-4	0.893	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13396420	3L_13396420_SNP [dm3] 3L_13403320_SNP [dm6]	C	T	8.854e^-4	0.893	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13396727	3L_13396727_SNP [dm3] 3L_13403627_SNP [dm6]	T	C	8.854e^-4	0.893	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13396731	3L_13396731_SNP [dm3] 3L_13403631_SNP [dm6]	A	G	8.854e^-4	0.893	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15443464	3L_15443464_SNP [dm3] 3L_15450364_SNP [dm6]	C	T	8.854e^-4	0.893	INTERGENIC
3L	18200234	3L_18200234_SNP [dm3] 3L_18207134_SNP [dm6]	A	T	8.854e^-4	0.893	INTERGENIC
3L	18597662	3L_18597662_SNP [dm3] 3L_18604562_SNP [dm6]	C	T	8.854e^-4	0.893	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
3L	3050926	3L_3050926_SNP [dm3] 3L_3050926_SNP [dm6]	A	T	8.854e^-4	0.893	DOWNSTREAM Sk2 INTRON CG32485	TF binding site BDTNP1_TFBS_hb
3L	5718566	3L_5718566_SNP [dm3] 3L_5725466_SNP [dm6]	C	T	8.854e^-4	0.893	INTRON sif
3L	5718684	3L_5718684_INS [dm3] 3L_5725584_INS [dm6]	C	ACATCTGTCT	8.854e^-4	0.893	INTRON sif
3L	7054433	3L_7054433_SNP [dm3] 3L_7061333_SNP [dm6]	A	T	8.854e^-4	0.893	INTRON CG8641
3L	7054564	3L_7054564_SNP [dm3] 3L_7061464_SNP [dm6]	T	A	8.854e^-4	0.893	INTRON CG8641
3L	7054639	3L_7054639_SNP [dm3] 3L_7061539_SNP [dm6]	T	G	8.854e^-4	0.893	INTRON CG8641
3L	7054642	3L_7054642_SNP [dm3] 3L_7061542_SNP [dm6]	T	C	8.854e^-4	0.893	INTRON CG8641
3L	7054702	3L_7054702_SNP [dm3] 3L_7061602_SNP [dm6]	C	T	8.854e^-4	0.893	INTRON CG8641
3R	26956994	3R_26956994_SNP [dm3] 3R_31131272_SNP [dm6]	A	T	8.854e^-4	0.893	UPSTREAM CG15556 INTERGENIC
2L	2943856	2L_2943856_SNP [dm3] 2L_2943856_SNP [dm6]	C	A	8.894e^-4	0.893	INTRON lilli
2L	3019468	2L_3019468_SNP [dm3] 2L_3019468_SNP [dm6]	G	T	8.894e^-4	0.893	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	3019863	2L_3019863_SNP [dm3] 2L_3019863_SNP [dm6]	A	G	8.894e^-4	0.893	NON_SYNONYMOUS_CODING CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26136229	3R_26136229_SNP [dm3] 3R_30310507_SNP [dm6]	G	A	8.894e^-4	0.893	INTRON hdc
2R	4224112	2R_4224112_SNP [dm3] 2R_8336607_SNP [dm6]	C	T	9.082e^-4	0.893	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2035096	3L_2035096_SNP [dm3] 3L_2035096_SNP [dm6]	T	G	9.082e^-4	0.893	INTERGENIC
2L	19901766	2L_19901766_SNP [dm3] 2L_19901766_SNP [dm6]	G	A	9.330e^-4	0.893	INTRON sick
2R	13937771	2R_13937771_INS [dm3] 2R_18050266_INS [dm6]	T	TATTAGGAATCTCAAATTT...	9.330e^-4	0.893	UTR_3_PRIME Muc55B UPSTREAM CG14495
2R	8307972	2R_8307972_SNP [dm3] 2R_12420467_SNP [dm6]	G	A	9.330e^-4	0.893	DOWNSTREAM CG8834 INTRON CG8834	TF binding site mE1_TFBS_cad
3R	21906566	3R_21906566_SNP [dm3] 3R_26080844_SNP [dm6]	T	C	9.330e^-4	0.893	INTRON dys	TF binding site mE1_TFBS_cad
3R	21906588	3R_21906588_SNP [dm3] 3R_26080866_SNP [dm6]	A	G	9.330e^-4	0.893	INTRON dys	TF binding site mE1_TFBS_cad
3R	23000663	3R_23000663_SNP [dm3] 3R_27174941_SNP [dm6]	C	T	9.330e^-4	0.893	SPLICE_SITE_REGION Ser INTRON Ser	TF binding site mE1_TFBS_cad
3R	23000688	3R_23000688_SNP [dm3] 3R_27174966_SNP [dm6]	A	G	9.330e^-4	0.893	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23000693	3R_23000693_SNP [dm3] 3R_27174971_SNP [dm6]	C	A	9.330e^-4	0.893	INTRON Ser	TF binding site mE1_TFBS_cad
3R	24380279	3R_24380279_SNP [dm3] 3R_28554557_SNP [dm6]	T	G	9.330e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21180520	X_21180520_SNP [dm3] X_21309493_SNP [dm6]	A	T	9.330e^-4	0.893	INTRON CG1801
3R	19287727	3R_19287727_SNP [dm3] 3R_23462005_SNP [dm6]	C	G	9.357e^-4	0.893	INTRON CG4374
2R	9251246	2R_9251246_SNP [dm3] 2R_13363741_SNP [dm6]	T	C	9.677e^-4	0.893	UPSTREAM CR45312 INTERGENIC
3L	2611721	3L_2611721_SNP [dm3] 3L_2611721_SNP [dm6]	C	A	9.677e^-4	0.893	INTRON Pxn
X	14263189	X_14263189_SNP [dm3] X_14369156_SNP [dm6]	A	T	9.677e^-4	0.893	INTRON dpr8
2L	2868862	2L_2868862_SNP [dm3] 2L_2868862_SNP [dm6]	A	G	9.843e^-4	0.893	UTR_3_PRIME CG31694 UPSTREAM CG8813 DOWNSTREAM CG2991
2L	3016388	2L_3016388_SNP [dm3] 2L_3016388_SNP [dm6]	G	T	9.843e^-4	0.893	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	8878853	2L_8878853_SNP [dm3] 2L_8878853_SNP [dm6]	A	G	9.843e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5233267	2R_5233267_SNP [dm3] 2R_9345762_SNP [dm6]	G	A	9.843e^-4	0.893	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	6415627	2R_6415627_SNP [dm3] 2R_10528122_SNP [dm6]	G	A	9.843e^-4	0.893	INTRON lola
3R	14453333	3R_14453333_SNP [dm3] 3R_18627611_SNP [dm6]	C	T	9.843e^-4	0.893	DOWNSTREAM tRNA:CR31228 INTRON qin
X	13826441	X_13826441_SNP [dm3] X_13932408_SNP [dm6]	T	C	9.843e^-4	0.893	INTRON mamo
X	8662505	X_8662505_SNP [dm3] X_8768472_SNP [dm6]	A	G	9.843e^-4	0.893	INTRON Lim1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14267698	3R_14267698_SNP [dm3] 3R_18441976_SNP [dm6]	A	T	9.998e^-4	0.893	INTRON fru

By genomic position
Variant impact
Gene name

Deaths phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results