DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.771e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02011

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.1938	0.0406

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1372 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	1756321	2R_1756321_DEL [dm3] 2R_5868816_DEL [dm6]	TAGAATATTTATTCTTGATC...	T	7.178e^-7	0.467	INTERGENIC
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	8.191e^-7	0.467	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	1.057e^-6	0.467	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	1.057e^-6	0.467	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4727026	2R_4727026_SNP [dm3] 2R_8839521_SNP [dm6]	A	G	1.485e^-6	0.525	INTRON sns
2R	13045522	2R_13045522_SNP [dm3] 2R_17158017_SNP [dm6]	A	G	3.675e^-6	0.809	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
2L	15248135	2L_15248135_SNP [dm3] 2L_15248135_SNP [dm6]	A	T	5.441e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	13044615	2R_13044615_SNP [dm3] 2R_17157110_SNP [dm6]	C	T	5.960e^-6	0.809	UTR_3_PRIME CG17290 & 1 other
2L	15248273	2L_15248273_DEL [dm3] 2L_15248273_DEL [dm6]	GCAG	G	6.134e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	13002550	2R_13002550_SNP [dm3] 2R_17115045_SNP [dm6]	A	G	6.242e^-6	0.809	DOWNSTREAM CG15611 INTERGENIC
2L	15248188	2L_15248188_SNP [dm3] 2L_15248188_SNP [dm6]	A	T	6.273e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248211	2L_15248211_SNP [dm3] 2L_15248211_SNP [dm6]	C	T	6.550e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248233	2L_15248233_SNP [dm3] 2L_15248233_SNP [dm6]	G	C	6.550e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	2434700	3R_2434700_SNP [dm3] 3R_6608978_SNP [dm6]	G	A	7.364e^-6	0.809	UPSTREAM glob2 INTERGENIC
2R	13044434	2R_13044434_SNP [dm3] 2R_17156929_SNP [dm6]	A	T	8.217e^-6	0.809	UTR_3_PRIME CG17290 & 1 other
3L	8413602	3L_8413602_DEL [dm3] 3L_8420502_DEL [dm6]	ATGT	A	8.309e^-6	0.809	INTRON CG32354
2L	15248161	2L_15248161_SNP [dm3] 2L_15248161_SNP [dm6]	T	A	9.160e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248164	2L_15248164_SNP [dm3] 2L_15248164_SNP [dm6]	G	C	9.160e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248172	2L_15248172_SNP [dm3] 2L_15248172_SNP [dm6]	T	A	9.160e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248180	2L_15248180_INS [dm3] 2L_15248180_INS [dm6]	G	GT	9.160e^-6	0.809	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	10674618	3L_10674618_SNP [dm3] 3L_10681518_SNP [dm6]	T	C	1.314e^-5	0.975	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	13002549	2R_13002549_SNP [dm3] 2R_17115044_SNP [dm6]	T	G	1.436e^-5	0.975	DOWNSTREAM CG15611 INTERGENIC
2R	13002552	2R_13002552_SNP [dm3] 2R_17115047_SNP [dm6]	G	A	1.436e^-5	0.975	DOWNSTREAM CG15611 INTERGENIC
2R	6739540	2R_6739540_SNP [dm3] 2R_10852035_SNP [dm6]	T	C	1.466e^-5	0.975	INTRON CG30015
3L	4970262	3L_4970262_SNP [dm3] 3L_4970262_SNP [dm6]	T	C	1.576e^-5	0.975	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11486093	2L_11486093_SNP [dm3] 2L_11486093_SNP [dm6]	A	C	1.948e^-5	0.975	UTR_5_PRIME sala UTR_3_PRIME CG43355 UPSTREAM sala DOWNSTREAM CG43355	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13044562	2R_13044562_SNP [dm3] 2R_17157057_SNP [dm6]	T	G	2.006e^-5	0.975	UTR_3_PRIME CG17290 & 1 other
2R	13797553	2R_13797553_SNP [dm3] 2R_17910048_SNP [dm6]	G	A	2.191e^-5	0.975	INTRON Elk
2L	15248234	2L_15248234_SNP [dm3] 2L_15248234_SNP [dm6]	T	C	2.220e^-5	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	5304768	3L_5304768_SNP [dm3] 3L_5311668_SNP [dm6]	C	T	2.234e^-5	0.975	INTERGENIC
2L	3102052	2L_3102052_SNP [dm3] 2L_3102052_SNP [dm6]	T	C	2.474e^-5	0.975	INTRON toc
2L	11485417	2L_11485417_SNP [dm3] 2L_11485417_SNP [dm6]	C	T	2.476e^-5	0.975	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11587364	3R_11587364_SNP [dm3] 3R_15761642_SNP [dm6]	G	A	2.491e^-5	0.975	INTERGENIC
2R	10774709	2R_10774709_DEL [dm3] 2R_14887204_DEL [dm6]	TCTACCCT	T	2.596e^-5	0.975	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
2L	15248202	2L_15248202_SNP [dm3] 2L_15248202_SNP [dm6]	A	T	2.711e^-5	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	13797555	2R_13797555_SNP [dm3] 2R_17910050_SNP [dm6]	A	G	2.820e^-5	0.975	INTRON Elk
3L	10676402	3L_10676402_SNP [dm3] 3L_10683302_SNP [dm6]	G	A	2.975e^-5	0.975	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15635536	3L_15635536_SNP [dm3] 3L_15642436_SNP [dm6]	T	A	2.991e^-5	0.975	INTRON comm3
2R	13002520	2R_13002520_SNP [dm3] 2R_17115015_SNP [dm6]	A	G	3.043e^-5	0.975	DOWNSTREAM CG15611 INTERGENIC
X	16425477	X_16425477_SNP [dm3] X_16531444_SNP [dm6]	G	A	3.047e^-5	0.975	INTRON para	TF binding site BDTNP1_TFBS_dl
2R	6740549	2R_6740549_SNP [dm3] 2R_10853044_SNP [dm6]	A	G	3.181e^-5	0.975	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	11187892	3L_11187892_SNP [dm3] 3L_11194792_SNP [dm6]	T	C	3.232e^-5	0.975	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	11188004	3L_11188004_SNP [dm3] 3L_11194904_SNP [dm6]	T	C	3.232e^-5	0.975	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	1747397	2R_1747397_SNP [dm3] 2R_5859892_SNP [dm6]	G	A	3.379e^-5	0.975	UTR_3_PRIME dpr12
2R	12852342	2R_12852342_SNP [dm3] 2R_16964837_SNP [dm6]	A	G	3.391e^-5	0.975	EXON CR44376
3L	18142950	3L_18142950_SNP [dm3] 3L_18149850_SNP [dm6]	T	C	3.532e^-5	0.975	INTRON CG7330
2L	5743381	2L_5743381_SNP [dm3] 2L_5743381_SNP [dm6]	A	G	3.560e^-5	0.975	INTRON CG11030
2L	5743383	2L_5743383_SNP [dm3] 2L_5743383_SNP [dm6]	T	G	3.560e^-5	0.975	INTRON CG11030
2L	5743385	2L_5743385_INS [dm3] 2L_5743385_INS [dm6]	T	TTATTCCC	3.560e^-5	0.975	INTRON CG11030
X	19044435	X_19044435_DEL [dm3] X_19150402_DEL [dm6]	AA	A	3.585e^-5	0.975	INTRON RhoGAP18B
2L	11486010	2L_11486010_SNP [dm3] 2L_11486010_SNP [dm6]	A	G	3.609e^-5	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10676607	3L_10676607_SNP [dm3] 3L_10683507_SNP [dm6]	T	C	3.669e^-5	0.975	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15248160	2L_15248160_SNP [dm3] 2L_15248160_SNP [dm6]	T	C	3.684e^-5	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
X	2475865	X_2475865_SNP [dm3] X_2581832_SNP [dm6]	T	C	3.778e^-5	0.975	UPSTREAM CG13759 INTRON CG13759
2R	13044470	2R_13044470_SNP [dm3] 2R_17156965_SNP [dm6]	A	C	3.820e^-5	0.975	UTR_3_PRIME CG17290 & 1 other
2L	5732839	2L_5732839_SNP [dm3] 2L_5732839_SNP [dm6]	T	C	4.090e^-5	0.975	DOWNSTREAM CG11147 INTRON CG11030
2R	1756555	2R_1756555_SNP [dm3] 2R_5869050_SNP [dm6]	A	T	4.172e^-5	0.975	INTERGENIC
2L	5743071	2L_5743071_SNP [dm3] 2L_5743071_SNP [dm6]	A	C	4.354e^-5	0.975	INTRON CG11030
2L	5743559	2L_5743559_SNP [dm3] 2L_5743559_SNP [dm6]	G	A	4.354e^-5	0.975	INTRON CG11030
3R	3996798	3R_3996798_SNP [dm3] 3R_8171076_SNP [dm6]	G	A	4.531e^-5	0.975	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	4.539e^-5	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11207328	3R_11207328_SNP [dm3] 3R_15381606_SNP [dm6]	C	T	4.576e^-5	0.975	UTR_3_PRIME h-cup INTRON Rbp
2L	5265427	2L_5265427_SNP [dm3] 2L_5265427_SNP [dm6]	C	A	4.614e^-5	0.975	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6737616	2R_6737616_SNP [dm3] 2R_10850111_SNP [dm6]	T	C	4.708e^-5	0.975	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	17685916	2R_17685916_SNP [dm3] 2R_21798411_SNP [dm6]	G	A	4.752e^-5	0.975	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	973537	2L_973537_SNP [dm3] 2L_973537_SNP [dm6]	C	T	4.917e^-5	0.975	INTERGENIC
3L	11582093	3L_11582093_SNP [dm3] 3L_11588993_SNP [dm6]	T	G	5.075e^-5	0.975	UPSTREAM CG7377 INTERGENIC
3L	11187715	3L_11187715_SNP [dm3] 3L_11194615_SNP [dm6]	G	A	5.118e^-5	0.975	INTRON GlcAT-P
3R	2435982	3R_2435982_SNP [dm3] 3R_6610260_SNP [dm6]	T	C	5.188e^-5	0.975	INTERGENIC
2L	3083505	2L_3083505_INS [dm3] 2L_3083505_INS [dm6]	C	CGACATCC	5.237e^-5	0.975	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11189451	3L_11189451_SNP [dm3] 3L_11196351_SNP [dm6]	G	A	5.495e^-5	0.975	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7844229	2L_7844229_SNP [dm3] 2L_7844229_SNP [dm6]	G	A	5.553e^-5	0.975	DOWNSTREAM CG14535 INTERGENIC
2L	7844242	2L_7844242_SNP [dm3] 2L_7844242_SNP [dm6]	A	C	5.553e^-5	0.975	DOWNSTREAM CG14535 INTERGENIC
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	5.674e^-5	0.975	INTRON CG32103
2R	6784933	2R_6784933_INS [dm3] 2R_10897428_INS [dm6]	T	TT	5.722e^-5	0.975	DOWNSTREAM Rpb5 & 1 other INTRON CG7712	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
2L	11578470	2L_11578470_SNP [dm3] 2L_11578470_SNP [dm6]	A	G	5.732e^-5	0.975	INTERGENIC
2R	13040486	2R_13040486_SNP [dm3] 2R_17152981_SNP [dm6]	A	C	5.824e^-5	0.975	INTERGENIC
X	14787705	X_14787705_SNP [dm3] X_14893672_SNP [dm6]	A	C	5.890e^-5	0.975	INTRON Flo2 & 1 other
X	11315438	X_11315438_SNP [dm3] X_11421405_SNP [dm6]	G	T	6.088e^-5	0.975	INTERGENIC
X	11315455	X_11315455_SNP [dm3] X_11421422_SNP [dm6]	C	G	6.088e^-5	0.975	INTERGENIC
3L	4759671	3L_4759671_SNP [dm3] 3L_4759671_SNP [dm6]	C	A	6.175e^-5	0.975	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	6.175e^-5	0.975	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759743	3L_4759743_SNP [dm3] 3L_4759743_SNP [dm6]	C	T	6.175e^-5	0.975	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5743055	2L_5743055_SNP [dm3] 2L_5743055_SNP [dm6]	T	C	6.325e^-5	0.975	INTRON CG11030
2L	5743070	2L_5743070_SNP [dm3] 2L_5743070_SNP [dm6]	T	A	6.325e^-5	0.975	INTRON CG11030
2L	5743076	2L_5743076_SNP [dm3] 2L_5743076_SNP [dm6]	A	C	6.325e^-5	0.975	INTRON CG11030
2L	5743099	2L_5743099_INS [dm3] 2L_5743099_INS [dm6]	A	ATCACTTGCAAGAAAGA...	6.325e^-5	0.975	INTRON CG11030
2L	5743107	2L_5743107_SNP [dm3] 2L_5743107_SNP [dm6]	T	A	6.325e^-5	0.975	INTRON CG11030
2L	5743139	2L_5743139_SNP [dm3] 2L_5743139_SNP [dm6]	A	T	6.325e^-5	0.975	INTRON CG11030
2L	5743142	2L_5743142_SNP [dm3] 2L_5743142_SNP [dm6]	T	A	6.325e^-5	0.975	INTRON CG11030
2L	5743146	2L_5743146_INS [dm3] 2L_5743146_INS [dm6]	T	TATGTATA	6.325e^-5	0.975	INTRON CG11030
2L	5743172	2L_5743172_SNP [dm3] 2L_5743172_SNP [dm6]	T	C	6.325e^-5	0.975	INTRON CG11030
2L	5743175	2L_5743175_SNP [dm3] 2L_5743175_SNP [dm6]	A	C	6.325e^-5	0.975	INTRON CG11030
2L	5743200	2L_5743200_SNP [dm3] 2L_5743200_SNP [dm6]	G	A	6.325e^-5	0.975	INTRON CG11030
2L	5743204	2L_5743204_MNP [dm3] 2L_5743204_MNP [dm6]	CAGTT	TGAAA	6.325e^-5	0.975	INTRON CG11030
2L	5743213	2L_5743213_DEL [dm3] 2L_5743213_DEL [dm6]	TCT	AA	6.325e^-5	0.975	INTRON CG11030
2L	5743284	2L_5743284_SNP [dm3] 2L_5743284_SNP [dm6]	A	G	6.325e^-5	0.975	INTRON CG11030
2L	5743286	2L_5743286_SNP [dm3] 2L_5743286_SNP [dm6]	T	G	6.325e^-5	0.975	INTRON CG11030
2L	5743532	2L_5743532_DEL [dm3] 2L_5743532_DEL [dm6]	TGAGTTTTAGAGCA...	T	6.325e^-5	0.975	INTRON CG11030
3L	11192362	3L_11192362_SNP [dm3] 3L_11199262_SNP [dm6]	T	C	6.372e^-5	0.975	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
3L	1144590	3L_1144590_SNP [dm3] 3L_1144590_SNP [dm6]	G	C	6.414e^-5	0.975	INTRON bab2
2R	1047107	2R_1047107_SNP [dm3] 2R_5159602_SNP [dm6]	A	G	6.433e^-5	0.975	INTERGENIC	transposable element FlyBase
3L	8522953	3L_8522953_SNP [dm3] 3L_8529853_SNP [dm6]	A	G	6.653e^-5	0.975	INTRON foi
3L	13462864	3L_13462864_SNP [dm3] 3L_13469764_SNP [dm6]	T	C	6.694e^-5	0.975	UPSTREAM CG10089 INTRON CG10089
2L	7844231	2L_7844231_SNP [dm3] 2L_7844231_SNP [dm6]	T	A	6.731e^-5	0.975	DOWNSTREAM CG14535 INTERGENIC
2L	15248088	2L_15248088_SNP [dm3] 2L_15248088_SNP [dm6]	T	A	6.816e^-5	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	1756405	2R_1756405_MNP [dm3] 2R_5868900_MNP [dm6]	TTT	AAG	6.867e^-5	0.975	INTERGENIC
2R	1756408	2R_1756408_DEL [dm3] 2R_5868903_DEL [dm6]	AG	A	7.034e^-5	0.975	INTERGENIC
2R	1756412	2R_1756412_SNP [dm3] 2R_5868907_SNP [dm6]	T	G	7.034e^-5	0.975	INTERGENIC
2L	3083578	2L_3083578_SNP [dm3] 2L_3083578_SNP [dm6]	C	T	7.199e^-5	0.975	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	19512246	2R_19512246_SNP [dm3] 2R_23624723_SNP [dm6]	A	T	7.205e^-5	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14317874	3L_14317874_SNP [dm3] 3L_14324774_SNP [dm6]	G	T	7.366e^-5	0.975	INTRON fz & 1 other
3L	21151521	3L_21151521_SNP [dm3] 3L_21158421_SNP [dm6]	T	C	7.453e^-5	0.975	INTRON Ac78C	TF binding site mE1_TFBS_inv
3L	2554573	3L_2554573_SNP [dm3] 3L_2554573_SNP [dm6]	A	T	7.519e^-5	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
2L	16043751	2L_16043751_SNP [dm3] 2L_16043751_SNP [dm6]	A	T	7.679e^-5	0.975	UPSTREAM BicC INTRON BicC & 1 other
3L	13836110	3L_13836110_SNP [dm3] 3L_13843010_SNP [dm6]	G	T	7.780e^-5	0.975	UTR_5_PRIME CG8750 UPSTREAM CG8757 & 1 other
3R	22747303	3R_22747303_INS [dm3] 3R_26921581_INS [dm6]	A	AG	7.989e^-5	0.975	INTRON sda
3L	18163959	3L_18163959_SNP [dm3] 3L_18170859_SNP [dm6]	C	T	8.137e^-5	0.975	INTRON W
2R	6741762	2R_6741762_SNP [dm3] 2R_10854257_SNP [dm6]	G	A	8.195e^-5	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	14317890	3L_14317890_SNP [dm3] 3L_14324790_SNP [dm6]	C	T	8.213e^-5	0.975	INTRON fz & 1 other
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	8.253e^-5	0.975	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	19180716	2R_19180716_SNP [dm3] 2R_23293193_SNP [dm6]	A	C	8.371e^-5	0.975	INTERGENIC
2L	5743014	2L_5743014_SNP [dm3] 2L_5743014_SNP [dm6]	T	C	8.384e^-5	0.975	INTRON CG11030
2L	5743460	2L_5743460_SNP [dm3] 2L_5743460_SNP [dm6]	G	A	8.384e^-5	0.975	INTRON CG11030
2R	1739485	2R_1739485_SNP [dm3] 2R_5851980_SNP [dm6]	T	A	8.516e^-5	0.975	INTRON dpr12
2R	13044336	2R_13044336_SNP [dm3] 2R_17156831_SNP [dm6]	C	T	8.691e^-5	0.975	UTR_3_PRIME CG17290 & 1 other
X	3765012	X_3765012_SNP [dm3] X_3870979_SNP [dm6]	T	G	8.702e^-5	0.975	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	2892968	3L_2892968_SNP [dm3] 3L_2892968_SNP [dm6]	T	G	8.739e^-5	0.975	UPSTREAM spz5 INTERGENIC
3L	12406434	3L_12406434_SNP [dm3] 3L_12413334_SNP [dm6]	T	C	8.859e^-5	0.975	INTRON CG32103
2R	6470031	2R_6470031_SNP [dm3] 2R_10582526_SNP [dm6]	C	G	8.896e^-5	0.975	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16185924	2R_16185924_SNP [dm3] 2R_20298419_SNP [dm6]	C	T	9.000e^-5	0.975	INTERGENIC
3L	10685195	3L_10685195_SNP [dm3] 3L_10692095_SNP [dm6]	T	G	9.149e^-5	0.975	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
2R	6469974	2R_6469974_SNP [dm3] 2R_10582469_SNP [dm6]	G	C	9.251e^-5	0.975	INTRON psq	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	5743279	2L_5743279_SNP [dm3] 2L_5743279_SNP [dm6]	G	T	9.303e^-5	0.975	INTRON CG11030
3R	2390341	3R_2390341_SNP [dm3] 3R_6564619_SNP [dm6]	C	A	9.336e^-5	0.975	INTRON dpr11
X	2475838	X_2475838_SNP [dm3] X_2581805_SNP [dm6]	C	T	9.346e^-5	0.975	UPSTREAM CG13759 INTRON CG13759
3L	10006031	3L_10006031_SNP [dm3] 3L_10012931_SNP [dm6]	A	G	9.438e^-5	0.975	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6741790	2R_6741790_SNP [dm3] 2R_10854285_SNP [dm6]	C	T	9.489e^-5	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2L	16043780	2L_16043780_SNP [dm3] 2L_16043780_SNP [dm6]	T	A	9.642e^-5	0.975	UPSTREAM BicC INTRON BicC & 1 other
2L	15302119	2L_15302119_SNP [dm3] 2L_15302119_SNP [dm6]	T	A	9.677e^-5	0.975	INTERGENIC
2L	15302138	2L_15302138_SNP [dm3] 2L_15302138_SNP [dm6]	G	T	9.677e^-5	0.975	INTERGENIC
2L	15302152	2L_15302152_SNP [dm3] 2L_15302152_SNP [dm6]	A	G	9.677e^-5	0.975	INTERGENIC
2L	15302225	2L_15302225_SNP [dm3] 2L_15302225_SNP [dm6]	G	A	9.677e^-5	0.975	INTERGENIC
2L	15302241	2L_15302241_SNP [dm3] 2L_15302241_SNP [dm6]	A	T	9.677e^-5	0.975	INTERGENIC
2L	7192249	2L_7192249_SNP [dm3] 2L_7192249_SNP [dm6]	C	T	9.690e^-5	0.975	INTRON CG4497	TF binding site mE1_TFBS_inv
2R	6651926	2R_6651926_SNP [dm3] 2R_10764421_SNP [dm6]	C	G	9.851e^-5	0.975	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	11486051	2L_11486051_SNP [dm3] 2L_11486051_SNP [dm6]	G	T	9.853e^-5	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8322253	2L_8322253_SNP [dm3] 2L_8322253_SNP [dm6]	A	T	9.905e^-5	0.975	DOWNSTREAM CG7787 INTRON CG7781	TF binding site mE1_TFBS_cad
3R	4135967	3R_4135967_SNP [dm3] 3R_8310245_SNP [dm6]	A	T	9.923e^-5	0.975	UTR_5_PRIME CG11693 DOWNSTREAM CG11694 INTRON CG11693	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	18877372	X_18877372_SNP [dm3] X_18983339_SNP [dm6]	T	C	9.942e^-5	0.975	INTRON CG43759
2L	15248032	2L_15248032_SNP [dm3] 2L_15248032_SNP [dm6]	C	T	9.961e^-5	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	2210668	3L_2210668_SNP [dm3] 3L_2210668_SNP [dm6]	G	A	9.998e^-5	0.975	DOWNSTREAM CG15878 INTERGENIC
2R	1756660	2R_1756660_SNP [dm3] 2R_5869155_SNP [dm6]	C	T	1.004e^-4	0.975	INTERGENIC
3L	5789831	3L_5789831_SNP [dm3] 3L_5796731_SNP [dm6]	A	G	1.008e^-4	0.975	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
X	14286143	X_14286143_SNP [dm3] X_14392110_SNP [dm6]	T	C	1.008e^-4	0.975	INTRON dpr8
2L	15302128	2L_15302128_SNP [dm3] 2L_15302128_SNP [dm6]	A	C	1.023e^-4	0.975	INTERGENIC
2L	15302136	2L_15302136_SNP [dm3] 2L_15302136_SNP [dm6]	G	A	1.023e^-4	0.975	INTERGENIC
X	8633311	X_8633311_SNP [dm3] X_8739278_SNP [dm6]	A	G	1.035e^-4	0.975	INTERGENIC
3L	5372429	3L_5372429_DEL [dm3] 3L_5379329_DEL [dm6]	TGT	T	1.038e^-4	0.975	DOWNSTREAM CR45743 INTRON Ir64a
2R	6740923	2R_6740923_SNP [dm3] 2R_10853418_SNP [dm6]	A	T	1.052e^-4	0.975	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740924	2R_6740924_SNP [dm3] 2R_10853419_SNP [dm6]	A	T	1.052e^-4	0.975	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11751158	3R_11751158_SNP [dm3] 3R_15925436_SNP [dm6]	G	C	1.060e^-4	0.975	UPSTREAM CG34276 INTRON CG4221
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	1.060e^-4	0.975	UPSTREAM CG34276 INTRON CG4221
3L	14153711	3L_14153711_SNP [dm3] 3L_14160611_SNP [dm6]	C	T	1.068e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3L	18142951	3L_18142951_SNP [dm3] 3L_18149851_SNP [dm6]	G	A	1.072e^-4	0.975	INTRON CG7330
2R	6469957	2R_6469957_SNP [dm3] 2R_10582452_SNP [dm6]	C	G	1.084e^-4	0.975	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3L	12406414	3L_12406414_SNP [dm3] 3L_12413314_SNP [dm6]	G	T	1.084e^-4	0.975	INTRON CG32103
2R	12698797	2R_12698797_SNP [dm3] 2R_16811292_SNP [dm6]	G	T	1.085e^-4	0.975	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
3L	18143943	3L_18143943_SNP [dm3] 3L_18150843_SNP [dm6]	T	C	1.087e^-4	0.975	SYNONYMOUS_CODING CG7330
2L	5743497	2L_5743497_SNP [dm3] 2L_5743497_SNP [dm6]	A	T	1.103e^-4	0.975	INTRON CG11030
2L	5743509	2L_5743509_INS [dm3] 2L_5743509_INS [dm6]	A	CG	1.103e^-4	0.975	INTRON CG11030
2L	1496625	2L_1496625_SNP [dm3] 2L_1496625_SNP [dm6]	G	T	1.106e^-4	0.975	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	1.129e^-4	0.975	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
3L	2974874	3L_2974874_SNP [dm3] 3L_2974874_SNP [dm6]	T	C	1.139e^-4	0.975	DOWNSTREAM CR44530 INTERGENIC
3R	26810771	3R_26810771_SNP [dm3] 3R_30985049_SNP [dm6]	T	C	1.139e^-4	0.975	INTRON 5-HT7
2R	7058313	2R_7058313_SNP [dm3] 2R_11170808_SNP [dm6]	C	A	1.167e^-4	0.975	INTRON shn & 1 other
2R	15911936	2R_15911936_SNP [dm3] 2R_20024431_SNP [dm6]	A	G	1.177e^-4	0.975	INTERGENIC
2R	6739887	2R_6739887_SNP [dm3] 2R_10852382_SNP [dm6]	G	A	1.177e^-4	0.975	INTRON CG30015
3R	14035453	3R_14035453_SNP [dm3] 3R_18209731_SNP [dm6]	C	G	1.183e^-4	0.975	DOWNSTREAM CG44158 INTRON CG7985
2L	10974151	2L_10974151_SNP [dm3] 2L_10974151_SNP [dm6]	G	C	1.183e^-4	0.975	SYNONYMOUS_CODING abo DOWNSTREAM CG16743	TF binding site mE1_TFBS_HSA
X	7594039	X_7594039_SNP [dm3] X_7700006_SNP [dm6]	T	G	1.187e^-4	0.975	INTRON CHES-1-like
2R	6739425	2R_6739425_SNP [dm3] 2R_10851920_SNP [dm6]	G	T	1.190e^-4	0.975	INTRON CG30015
X	7592040	X_7592040_SNP [dm3] X_7698007_SNP [dm6]	T	C	1.208e^-4	0.975	INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11088463	X_11088463_INS [dm3] X_11194430_INS [dm6]	T	TCCACCTCCTCCTCCACCTC...	1.209e^-4	0.975	DOWNSTREAM CR44765 INTERGENIC
2L	7844264	2L_7844264_SNP [dm3] 2L_7844264_SNP [dm6]	T	A	1.222e^-4	0.975	DOWNSTREAM CG14535 INTERGENIC
2L	7844269	2L_7844269_INS [dm3] 2L_7844269_INS [dm6]	T	TT	1.222e^-4	0.975	DOWNSTREAM CG14535 INTERGENIC
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	1.233e^-4	0.975	INTERGENIC
2R	6740379	2R_6740379_SNP [dm3] 2R_10852874_SNP [dm6]	G	T	1.235e^-4	0.975	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	13839371	3L_13839371_SNP [dm3] 3L_13846271_SNP [dm6]	A	G	1.259e^-4	0.975	NON_SYNONYMOUS_CODING Hml DOWNSTREAM Tsp68C
X	17676978	X_17676978_SNP [dm3] X_17782945_SNP [dm6]	T	C	1.269e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17676981	X_17676981_SNP [dm3] X_17782948_SNP [dm6]	C	T	1.269e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	1.271e^-4	0.975	UTR_3_PRIME axo INTRON axo
3L	11187945	3L_11187945_SNP [dm3] 3L_11194845_SNP [dm6]	C	A	1.297e^-4	0.975	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	5202402	3L_5202402_SNP [dm3] 3L_5209302_SNP [dm6]	C	T	1.312e^-4	0.975	INTRON shep
3L	10676645	3L_10676645_SNP [dm3] 3L_10683545_SNP [dm6]	T	C	1.336e^-4	0.975	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5743077	2L_5743077_SNP [dm3] 2L_5743077_SNP [dm6]	C	A	1.342e^-4	0.975	INTRON CG11030
3L	10911507	3L_10911507_SNP [dm3] 3L_10918407_SNP [dm6]	G	T	1.343e^-4	0.975	INTERGENIC
X	4467407	X_4467407_INS [dm3] X_4573374_INS [dm6]	G	GATGG	1.354e^-4	0.975	INTRON CR32773
2L	16043771	2L_16043771_SNP [dm3] 2L_16043771_SNP [dm6]	G	C	1.357e^-4	0.975	UPSTREAM BicC INTRON BicC & 1 other
3L	1266952	3L_1266952_SNP [dm3] 3L_1266952_SNP [dm6]	G	A	1.365e^-4	0.975	INTRON CG9134
X	19044387	X_19044387_DEL [dm3] X_19150354_DEL [dm6]	TCCAG	T	1.374e^-4	0.975	INTRON RhoGAP18B
2R	1753332	2R_1753332_SNP [dm3] 2R_5865827_SNP [dm6]	A	T	1.381e^-4	0.975	INTERGENIC
3L	563139	3L_563139_DEL [dm3] 3L_563139_DEL [dm6]	GAGACAAAAACATGAAGAAA...	G	1.383e^-4	0.975	INTRON hipk
3L	4636209	3L_4636209_SNP [dm3] 3L_4636209_SNP [dm6]	A	G	1.387e^-4	0.975	DOWNSTREAM axo INTRON axo
3L	15635632	3L_15635632_SNP [dm3] 3L_15642532_SNP [dm6]	T	A	1.407e^-4	0.975	INTRON comm3
3L	4030046	3L_4030046_SNP [dm3] 3L_4030046_SNP [dm6]	A	C	1.428e^-4	0.975	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	2435983	3R_2435983_SNP [dm3] 3R_6610261_SNP [dm6]	A	C	1.442e^-4	0.975	INTERGENIC
3L	4759676	3L_4759676_DEL [dm3] 3L_4759676_DEL [dm6]	CC	C	1.443e^-4	0.975	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1743247	2R_1743247_DEL [dm3] 2R_5855742_DEL [dm6]	GACATGGGAGTCGGATTGG...	G	1.448e^-4	0.975	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15302237	2L_15302237_SNP [dm3] 2L_15302237_SNP [dm6]	T	G	1.471e^-4	0.975	INTERGENIC
2R	16897400	2R_16897400_SNP [dm3] 2R_21009895_SNP [dm6]	C	T	1.485e^-4	0.975	NON_SYNONYMOUS_CODING grau UPSTREAM CG30291	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6741630	2R_6741630_SNP [dm3] 2R_10854125_SNP [dm6]	G	A	1.513e^-4	0.975	UTR_5_PRIME CG30015 INTRON CG30015 EXON CR45136
2R	12698724	2R_12698724_SNP [dm3] 2R_16811219_SNP [dm6]	A	T	1.516e^-4	0.975	DOWNSTREAM CR44465 INTERGENIC
2R	12698725	2R_12698725_SNP [dm3] 2R_16811220_SNP [dm6]	G	T	1.516e^-4	0.975	DOWNSTREAM CR44465 INTERGENIC
2R	12698727	2R_12698727_SNP [dm3] 2R_16811222_SNP [dm6]	A	T	1.516e^-4	0.975	DOWNSTREAM CR44465 INTERGENIC
3L	10676092	3L_10676092_SNP [dm3] 3L_10682992_SNP [dm6]	G	T	1.516e^-4	0.975	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15448046	2R_15448046_SNP [dm3] 2R_19560541_SNP [dm6]	G	A	1.524e^-4	0.975	INTRON sm
3L	13853242	3L_13853242_SNP [dm3] 3L_13860142_SNP [dm6]	A	C	1.531e^-4	0.975	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3R	25999651	3R_25999651_SNP [dm3] 3R_30173929_SNP [dm6]	G	A	1.537e^-4	0.975	INTRON Mlc2
2R	12465002	2R_12465002_DEL [dm3] 2R_16577497_DEL [dm6]	GG	G	1.538e^-4	0.975	UPSTREAM CG8317 INTERGENIC
3L	11586119	3L_11586119_SNP [dm3] 3L_11593019_SNP [dm6]	A	G	1.544e^-4	0.975	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
3L	18190066	3L_18190066_SNP [dm3] 3L_18196966_SNP [dm6]	G	T	1.566e^-4	0.975	DOWNSTREAM CR45234 INTERGENIC
3L	6109445	3L_6109445_SNP [dm3] 3L_6116345_SNP [dm6]	T	A	1.569e^-4	0.975	INTRON Ets65A	TF binding site mE1_TFBS_Kr
2R	6741702	2R_6741702_DEL [dm3] 2R_10854197_DEL [dm6]	GAGCGGCTAACAGCGCTG...	G	1.570e^-4	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2R	1755750	2R_1755750_SNP [dm3] 2R_5868245_SNP [dm6]	A	T	1.580e^-4	0.975	INTERGENIC
2R	1756514	2R_1756514_INS [dm3] 2R_5869009_INS [dm6]	T	TTTTGCT	1.588e^-4	0.975	INTERGENIC
2R	14742481	2R_14742481_SNP [dm3] 2R_18854976_SNP [dm6]	T	C	1.594e^-4	0.975	SYNONYMOUS_CODING Jheh1 DOWNSTREAM Jheh2	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2R	1755571	2R_1755571_SNP [dm3] 2R_5868066_SNP [dm6]	G	A	1.607e^-4	0.975	INTERGENIC
X	3127319	X_3127319_SNP [dm3] X_3233286_SNP [dm6]	C	A	1.620e^-4	0.975	INTRON dnc
2R	1155218	2R_1155218_SNP [dm3] 2R_5267713_SNP [dm6]	G	T	1.633e^-4	0.975	INTRON d4
2R	6651924	2R_6651924_INS [dm3] 2R_10764419_INS [dm6]	A	AAA	1.635e^-4	0.975	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	19157811	X_19157811_SNP [dm3] X_19263778_SNP [dm6]	T	C	1.673e^-4	0.975	INTRON Vav	TF binding site BDTNP1_TFBS_dl
X	3765122	X_3765122_SNP [dm3] X_3871089_SNP [dm6]	T	C	1.680e^-4	0.975	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
2L	9400983	2L_9400983_SNP [dm3] 2L_9400983_SNP [dm6]	A	T	1.698e^-4	0.975	INTRON Shawl
2L	21852049	2L_21852049_SNP [dm3] 2L_21852049_SNP [dm6]	A	G	1.700e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20024714	X_20024714_INS [dm3] X_20130681_INS [dm6]	C	CTTATCTTCATC...	1.709e^-4	0.975	UTR_3_PRIME CG42582
3L	19239731	3L_19239731_SNP [dm3] 3L_19246631_SNP [dm6]	T	G	1.712e^-4	0.975	INTERGENIC
3L	2288349	3L_2288349_SNP [dm3] 3L_2288349_SNP [dm6]	G	A	1.752e^-4	0.975	INTRON MsR2
3L	2288357	3L_2288357_DEL [dm3] 3L_2288357_DEL [dm6]	GCTTTTGTTA	G	1.752e^-4	0.975	INTRON MsR2
2L	15302153	2L_15302153_SNP [dm3] 2L_15302153_SNP [dm6]	G	T	1.767e^-4	0.975	INTERGENIC
3L	4099915	3L_4099915_SNP [dm3] 3L_4099915_SNP [dm6]	T	C	1.775e^-4	0.975	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	22706140	3L_22706140_SNP [dm3] 3L_22713040_SNP [dm6]	C	T	1.784e^-4	0.975	NON_SYNONYMOUS_CODING CG11370	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8774788	X_8774788_SNP [dm3] X_8880755_SNP [dm6]	A	G	1.806e^-4	0.975	INTRON Moe
3L	1145265	3L_1145265_SNP [dm3] 3L_1145265_SNP [dm6]	A	G	1.814e^-4	0.975	INTRON bab2
X	15491223	X_15491223_SNP [dm3] X_15597190_SNP [dm6]	T	C	1.818e^-4	0.975	INTERGENIC
2L	5743085	2L_5743085_SNP [dm3] 2L_5743085_SNP [dm6]	T	G	1.825e^-4	0.975	INTRON CG11030
2R	1411492	2R_1411492_SNP [dm3] 2R_5523987_SNP [dm6]	C	T	1.831e^-4	0.975	UPSTREAM CG30438 INTRON CG30438
2R	1412161	2R_1412161_SNP [dm3] 2R_5524656_SNP [dm6]	C	T	1.831e^-4	0.975	UPSTREAM CG30438 INTRON CG30438
3R	24762360	3R_24762360_SNP [dm3] 3R_28936638_SNP [dm6]	T	C	1.833e^-4	0.975	INTRON CG14521
3R	976312	3R_976312_SNP [dm3] 3R_5150590_SNP [dm6]	A	C	1.841e^-4	0.975	UPSTREAM dpr16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22874077	3R_22874077_INS [dm3] 3R_27048355_INS [dm6]	A	ATA	1.842e^-4	0.975	UPSTREAM TwdlT INTRON RYa-R
3R	22874084	3R_22874084_SNP [dm3] 3R_27048362_SNP [dm6]	C	T	1.842e^-4	0.975	UPSTREAM TwdlT INTRON RYa-R
3R	14724823	3R_14724823_SNP [dm3] 3R_18899101_SNP [dm6]	A	G	1.859e^-4	0.975	NON_SYNONYMOUS_CODING CG14297 UPSTREAM Rh2	regulatory region REDfly_CRMs
3L	2521514	3L_2521514_DEL [dm3] 3L_2521514_DEL [dm6]	TCCAG	T	1.859e^-4	0.975	INTRON Spn
2R	12698749	2R_12698749_SNP [dm3] 2R_16811244_SNP [dm6]	A	C	1.863e^-4	0.975	DOWNSTREAM CR44465 INTERGENIC
X	11315479	X_11315479_SNP [dm3] X_11421446_SNP [dm6]	A	T	1.889e^-4	0.975	INTERGENIC
X	11315495	X_11315495_INS [dm3] X_11421462_INS [dm6]	A	AGAACAGATAT...	1.889e^-4	0.975	INTERGENIC
3L	13873844	3L_13873844_SNP [dm3] 3L_13880744_SNP [dm6]	T	A	1.898e^-4	0.975	INTRON dysc & 1 other
2R	6642513	2R_6642513_SNP [dm3] 2R_10755008_SNP [dm6]	G	C	1.911e^-4	0.975	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
2L	11485450	2L_11485450_SNP [dm3] 2L_11485450_SNP [dm6]	T	C	1.915e^-4	0.975	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21852072	2L_21852072_SNP [dm3] 2L_21852072_SNP [dm6]	A	G	1.917e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1081478	2R_1081478_SNP [dm3] 2R_5193973_SNP [dm6]	T	C	1.920e^-4	0.975	INTRON Nipped-A	transposable element FlyBase
2R	6469796	2R_6469796_SNP [dm3] 2R_10582291_SNP [dm6]	G	C	1.923e^-4	0.975	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
3L	18142845	3L_18142845_SNP [dm3] 3L_18149745_SNP [dm6]	T	G	1.947e^-4	0.975	INTRON CG7330
3L	18695273	3L_18695273_SNP [dm3] 3L_18702173_SNP [dm6]	G	A	1.950e^-4	0.975	INTERGENIC
X	18843064	X_18843064_SNP [dm3] X_18949031_SNP [dm6]	T	C	1.981e^-4	0.975	INTRON CG43759	TF binding site mE1_TFBS_cad
3R	11813702	3R_11813702_SNP [dm3] 3R_15987980_SNP [dm6]	C	G	1.984e^-4	0.975	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1756775	2R_1756775_SNP [dm3] 2R_5869270_SNP [dm6]	T	C	1.993e^-4	0.975	INTERGENIC
2R	1761920	2R_1761920_SNP [dm3] 2R_5874415_SNP [dm6]	T	C	1.993e^-4	0.975	INTERGENIC
2R	1755751	2R_1755751_SNP [dm3] 2R_5868246_SNP [dm6]	C	T	2.046e^-4	0.975	INTERGENIC
2L	13632552	2L_13632552_SNP [dm3] 2L_13632552_SNP [dm6]	C	A	2.053e^-4	0.975	DOWNSTREAM CR43410 INTRON kuz
2L	13632565	2L_13632565_SNP [dm3] 2L_13632565_SNP [dm6]	T	C	2.053e^-4	0.975	DOWNSTREAM CR43410 INTRON kuz
2L	13632570	2L_13632570_SNP [dm3] 2L_13632570_SNP [dm6]	C	G	2.053e^-4	0.975	DOWNSTREAM CR43410 INTRON kuz
2L	1496604	2L_1496604_SNP [dm3] 2L_1496604_SNP [dm6]	G	A	2.100e^-4	0.975	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2L	9271512	2L_9271512_SNP [dm3] 2L_9271512_SNP [dm6]	C	A	2.121e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A
X	16425817	X_16425817_SNP [dm3] X_16531784_SNP [dm6]	G	T	2.128e^-4	0.975	INTRON para	TF binding site BDTNP1_TFBS_dl
3L	1279076	3L_1279076_SNP [dm3] 3L_1279076_SNP [dm6]	A	C	2.129e^-4	0.975	INTRON CG32333
2L	12953184	2L_12953184_SNP [dm3] 2L_12953184_SNP [dm6]	T	C	2.163e^-4	0.975	INTERGENIC
3L	18142848	3L_18142848_SNP [dm3] 3L_18149748_SNP [dm6]	C	T	2.168e^-4	0.975	INTRON CG7330
3L	18142857	3L_18142857_SNP [dm3] 3L_18149757_SNP [dm6]	A	C	2.168e^-4	0.975	INTRON CG7330
3L	11036089	3L_11036089_SNP [dm3] 3L_11042989_SNP [dm6]	A	T	2.177e^-4	0.975	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_Kr
3L	11365439	3L_11365439_SNP [dm3] 3L_11372339_SNP [dm6]	A	T	2.183e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	12384609	3R_12384609_SNP [dm3] 3R_16558887_SNP [dm6]	A	G	2.186e^-4	0.975	INTRON CG42342
3R	2651113	3R_2651113_SNP [dm3] 3R_6825391_SNP [dm6]	T	C	2.193e^-4	0.975	SYNONYMOUS_CODING Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	6643230	2R_6643230_SNP [dm3] 2R_10755725_SNP [dm6]	T	A	2.200e^-4	0.975	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19565537	2L_19565537_SNP [dm3] 2L_19565537_SNP [dm6]	C	A	2.206e^-4	0.975	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2L	13887787	2L_13887787_SNP [dm3] 2L_13887787_SNP [dm6]	T	G	2.206e^-4	0.975	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19194626	X_19194626_SNP [dm3] X_19300593_SNP [dm6]	T	A	2.208e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
2R	15256763	2R_15256763_SNP [dm3] 2R_19369258_SNP [dm6]	G	A	2.208e^-4	0.975	SYNONYMOUS_CODING CG9416
X	19614275	X_19614275_SNP [dm3] X_19720242_SNP [dm6]	A	G	2.220e^-4	0.975	INTRON CG12531
2R	12177425	2R_12177425_SNP [dm3] 2R_16289920_SNP [dm6]	C	A	2.230e^-4	0.975	UPSTREAM CG30099 INTRON JhI-26 EXON CR43730
3L	13330222	3L_13330222_SNP [dm3] 3L_13337122_SNP [dm6]	A	T	2.236e^-4	0.975	INTERGENIC
2L	1023827	2L_1023827_SNP [dm3] 2L_1023827_SNP [dm6]	T	A	2.248e^-4	0.975	INTRON IA-2
2L	5743028	2L_5743028_SNP [dm3] 2L_5743028_SNP [dm6]	G	A	2.255e^-4	0.975	INTRON CG11030
2R	8167715	2R_8167715_SNP [dm3] 2R_12280210_SNP [dm6]	A	C	2.257e^-4	0.975	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9271506	2L_9271506_SNP [dm3] 2L_9271506_SNP [dm6]	G	A	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A
2L	9271507	2L_9271507_SNP [dm3] 2L_9271507_SNP [dm6]	T	A	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A
2L	9271508	2L_9271508_INS [dm3] 2L_9271508_INS [dm6]	T	TG	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A
2L	9271516	2L_9271516_SNP [dm3] 2L_9271516_SNP [dm6]	T	A	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A
2L	9271534	2L_9271534_SNP [dm3] 2L_9271534_SNP [dm6]	C	A	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	9271538	2L_9271538_SNP [dm3] 2L_9271538_SNP [dm6]	A	C	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	9271612	2L_9271612_SNP [dm3] 2L_9271612_SNP [dm6]	G	T	2.263e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	16377886	2L_16377886_SNP [dm3] 2L_16377886_SNP [dm6]	C	T	2.271e^-4	0.975	INTERGENIC
3L	4636097	3L_4636097_SNP [dm3] 3L_4636097_SNP [dm6]	G	A	2.275e^-4	0.975	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2L	15261722	2L_15261722_SNP [dm3] 2L_15261722_SNP [dm6]	T	G	2.282e^-4	0.975	NON_SYNONYMOUS_CODING yuri
2L	17457632	2L_17457632_SNP [dm3] 2L_17457632_SNP [dm6]	G	T	2.283e^-4	0.975	SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2L	17457657	2L_17457657_SNP [dm3] 2L_17457657_SNP [dm6]	A	G	2.283e^-4	0.975	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
3L	17097539	3L_17097539_SNP [dm3] 3L_17104439_SNP [dm6]	C	A	2.285e^-4	0.975	INTRON Rbp6
3L	8679024	3L_8679024_SNP [dm3] 3L_8685924_SNP [dm6]	G	T	2.286e^-4	0.975	INTERGENIC
2R	14681355	2R_14681355_SNP [dm3] 2R_18793850_SNP [dm6]	G	T	2.309e^-4	0.975	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1427286	2R_1427286_INS [dm3] 2R_5539781_INS [dm6]	G	GAAGGGTAATAAAACGCTCA...	2.322e^-4	0.975	INTRON CG30438
X	3762416	X_3762416_SNP [dm3] X_3868383_SNP [dm6]	C	T	2.329e^-4	0.975	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23523173	3R_23523173_SNP [dm3] 3R_27697451_SNP [dm6]	G	A	2.330e^-4	0.975	SYNONYMOUS_CODING ALiX DOWNSTREAM CG43320	TF binding site mE1_TFBS_chinmo
3R	23523230	3R_23523230_SNP [dm3] 3R_27697508_SNP [dm6]	G	A	2.330e^-4	0.975	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo
2R	4712150	2R_4712150_SNP [dm3] 2R_8824645_SNP [dm6]	G	A	2.335e^-4	0.975	INTRON sns
2L	15248285	2L_15248285_SNP [dm3] 2L_15248285_SNP [dm6]	A	G	2.341e^-4	0.975	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	8167711	2R_8167711_SNP [dm3] 2R_12280206_SNP [dm6]	C	T	2.343e^-4	0.975	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1412656	2R_1412656_SNP [dm3] 2R_5525151_SNP [dm6]	A	T	2.362e^-4	0.975	INTRON CG30438
2R	1412686	2R_1412686_SNP [dm3] 2R_5525181_SNP [dm6]	T	G	2.362e^-4	0.975	INTRON CG30438
3L	18142771	3L_18142771_INS [dm3] 3L_18149671_INS [dm6]	A	AA	2.392e^-4	0.975	INTRON CG7330
2L	10575075	2L_10575075_DEL [dm3] 2L_10575075_DEL [dm6]	TT	T	2.399e^-4	0.975	DOWNSTREAM w-cup INTRON Trim9
3L	872800	3L_872800_SNP [dm3] 3L_872800_SNP [dm6]	T	C	2.402e^-4	0.975	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	872801	3L_872801_SNP [dm3] 3L_872801_SNP [dm6]	G	C	2.402e^-4	0.975	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3548731	3L_3548731_SNP [dm3] 3L_3548731_SNP [dm6]	C	T	2.412e^-4	0.975	INTRON Eip63E
2R	3551128	2R_3551128_SNP [dm3] 2R_7663623_SNP [dm6]	T	G	2.421e^-4	0.975	UPSTREAM CG2065 DOWNSTREAM CG2070 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	872773	3L_872773_SNP [dm3] 3L_872773_SNP [dm6]	A	T	2.436e^-4	0.975	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18720375	3L_18720375_SNP [dm3] 3L_18727275_SNP [dm6]	C	A	2.439e^-4	0.975	INTERGENIC
3L	18720417	3L_18720417_SNP [dm3] 3L_18727317_SNP [dm6]	G	T	2.439e^-4	0.975	INTERGENIC
3L	18720418	3L_18720418_SNP [dm3] 3L_18727318_SNP [dm6]	G	T	2.439e^-4	0.975	INTERGENIC
3L	18720428	3L_18720428_SNP [dm3] 3L_18727328_SNP [dm6]	G	A	2.439e^-4	0.975	INTERGENIC
2R	16881321	2R_16881321_SNP [dm3] 2R_20993816_SNP [dm6]	A	G	2.442e^-4	0.975	NON_SYNONYMOUS_CODING dgt3	TF binding site mE1_TFBS_sens
3L	18142840	3L_18142840_INS [dm3] 3L_18149740_INS [dm6]	T	CCA	2.446e^-4	0.975	INTRON CG7330
2R	19416357	2R_19416357_SNP [dm3] 2R_23528834_SNP [dm6]	G	A	2.448e^-4	0.975	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	11485514	2L_11485514_SNP [dm3] 2L_11485514_SNP [dm6]	C	T	2.451e^-4	0.975	SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2434943	3R_2434943_SNP [dm3] 3R_6609221_SNP [dm6]	G	A	2.452e^-4	0.975	UPSTREAM glob2 INTERGENIC
2R	1072947	2R_1072947_SNP [dm3] 2R_5185442_SNP [dm6]	G	A	2.455e^-4	0.975	INTRON Nipped-A	transposable element FlyBase
3L	13853140	3L_13853140_SNP [dm3] 3L_13860040_SNP [dm6]	A	T	2.471e^-4	0.975	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13854094	3L_13854094_SNP [dm3] 3L_13860994_SNP [dm6]	G	A	2.471e^-4	0.975	SYNONYMOUS_CODING CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1046111	2R_1046111_SNP [dm3] 2R_5158606_SNP [dm6]	C	G	2.486e^-4	0.975	INTERGENIC	transposable element FlyBase
3R	2436136	3R_2436136_SNP [dm3] 3R_6610414_SNP [dm6]	C	G	2.488e^-4	0.975	INTERGENIC
3L	13829341	3L_13829341_SNP [dm3] 3L_13836241_SNP [dm6]	T	G	2.508e^-4	0.975	INTERGENIC
3L	18142927	3L_18142927_SNP [dm3] 3L_18149827_SNP [dm6]	C	A	2.530e^-4	0.975	INTRON CG7330
X	14253782	X_14253782_SNP [dm3] X_14359749_SNP [dm6]	A	T	2.544e^-4	0.975	INTRON dpr8
2L	5742257	2L_5742257_SNP [dm3] 2L_5742257_SNP [dm6]	A	G	2.554e^-4	0.975	INTRON CG11030	TF binding site mE1_TFBS_inv
3L	2023313	3L_2023313_SNP [dm3] 3L_2023313_SNP [dm6]	A	G	2.568e^-4	0.975	SYNONYMOUS_CODING CG42356
3R	19013997	3R_19013997_SNP [dm3] 3R_23188275_SNP [dm6]	C	T	2.585e^-4	0.975	NON_SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3080382	X_3080382_DEL [dm3] X_3186349_DEL [dm6]	CGAAC	C	2.588e^-4	0.975	INTRON dnc
3L	18143016	3L_18143016_SNP [dm3] 3L_18149916_SNP [dm6]	C	G	2.597e^-4	0.975	INTRON CG7330
3L	18143017	3L_18143017_SNP [dm3] 3L_18149917_SNP [dm6]	A	T	2.597e^-4	0.975	INTRON CG7330
3L	18143019	3L_18143019_SNP [dm3] 3L_18149919_SNP [dm6]	A	C	2.597e^-4	0.975	INTRON CG7330
3R	2433577	3R_2433577_SNP [dm3] 3R_6607855_SNP [dm6]	T	A	2.598e^-4	0.975	DOWNSTREAM glob2 INTRON glob2
3R	2433645	3R_2433645_SNP [dm3] 3R_6607923_SNP [dm6]	T	A	2.598e^-4	0.975	UTR_3_PRIME glob2 INTRON glob2
3R	25834585	3R_25834585_SNP [dm3] 3R_30008863_SNP [dm6]	T	A	2.599e^-4	0.975	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
2L	5743108	2L_5743108_SNP [dm3] 2L_5743108_SNP [dm6]	C	T	2.601e^-4	0.975	INTRON CG11030
2L	5743150	2L_5743150_SNP [dm3] 2L_5743150_SNP [dm6]	T	A	2.601e^-4	0.975	INTRON CG11030
2R	1428846	2R_1428846_SNP [dm3] 2R_5541341_SNP [dm6]	T	G	2.608e^-4	0.975	INTRON CG30438
2L	19565521	2L_19565521_SNP [dm3] 2L_19565521_SNP [dm6]	A	C	2.608e^-4	0.975	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2L	4188571	2L_4188571_SNP [dm3] 2L_4188571_SNP [dm6]	T	A	2.623e^-4	0.975	NON_SYNONYMOUS_CODING lectin-24Db UPSTREAM CG31961 DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	4188573	2L_4188573_SNP [dm3] 2L_4188573_SNP [dm6]	G	C	2.623e^-4	0.975	NON_SYNONYMOUS_CODING lectin-24Db UPSTREAM CG31961 DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	6764817	2R_6764817_SNP [dm3] 2R_10877312_SNP [dm6]	A	G	2.624e^-4	0.975	UTR_3_PRIME Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
3L	11365311	3L_11365311_SNP [dm3] 3L_11372211_SNP [dm6]	T	C	2.631e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	21757628	2L_21757628_SNP [dm3] 2L_21757628_SNP [dm6]	A	C	2.656e^-4	0.975	UPSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21758397	2L_21758397_SNP [dm3] 2L_21758397_SNP [dm6]	A	G	2.656e^-4	0.975	UPSTREAM step INTRON CG1416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5373966	3L_5373966_SNP [dm3] 3L_5380866_SNP [dm6]	T	A	2.669e^-4	0.975	INTRON Ir64a
2R	1017672	2R_1017672_SNP [dm3] 2R_5130167_SNP [dm6]	A	G	2.683e^-4	0.975	DOWNSTREAM CR43256 INTERGENIC
3L	18142905	3L_18142905_SNP [dm3] 3L_18149805_SNP [dm6]	A	T	2.690e^-4	0.975	INTRON CG7330
X	3764992	X_3764992_SNP [dm3] X_3870959_SNP [dm6]	A	C	2.733e^-4	0.975	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	13377082	3L_13377082_SNP [dm3] 3L_13383982_SNP [dm6]	G	T	2.741e^-4	0.975	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	13377100	3L_13377100_SNP [dm3] 3L_13384000_SNP [dm6]	A	T	2.741e^-4	0.975	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377128	3L_13377128_SNP [dm3] 3L_13384028_SNP [dm6]	A	G	2.741e^-4	0.975	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377129	3L_13377129_SNP [dm3] 3L_13384029_SNP [dm6]	C	G	2.741e^-4	0.975	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377150	3L_13377150_SNP [dm3] 3L_13384050_SNP [dm6]	A	C	2.741e^-4	0.975	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	18626931	2L_18626931_SNP [dm3] 2L_18626931_SNP [dm6]	T	C	2.758e^-4	0.975	INTRON MESR3	TF binding site mE1_TFBS_Trl
2R	17159191	2R_17159191_SNP [dm3] 2R_21271686_SNP [dm6]	T	A	2.761e^-4	0.975	INTRON Rgk3
2L	5737536	2L_5737536_SNP [dm3] 2L_5737536_SNP [dm6]	G	T	2.786e^-4	0.975	INTRON CG11030 & 1 other
3L	12436822	3L_12436822_SNP [dm3] 3L_12443722_SNP [dm6]	A	T	2.805e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6741907	2R_6741907_SNP [dm3] 2R_10854402_SNP [dm6]	G	C	2.818e^-4	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	13829293	3L_13829293_SNP [dm3] 3L_13836193_SNP [dm6]	G	A	2.820e^-4	0.975	INTERGENIC
3L	13836141	3L_13836141_SNP [dm3] 3L_13843041_SNP [dm6]	G	A	2.820e^-4	0.975	UPSTREAM CG8757 & 2 others INTERGENIC
2L	7780777	2L_7780777_SNP [dm3] 2L_7780777_SNP [dm6]	C	T	2.823e^-4	0.975	SYNONYMOUS_CODING Uro UPSTREAM CG7164
3L	10734120	3L_10734120_SNP [dm3] 3L_10741020_SNP [dm6]	T	A	2.837e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14383040	3L_14383040_SNP [dm3] 3L_14389940_SNP [dm6]	A	G	2.838e^-4	0.975	INTERGENIC
X	3444096	X_3444096_SNP [dm3] X_3550063_SNP [dm6]	A	G	2.852e^-4	0.975	INTRON CG32791
3L	5697337	3L_5697337_MNP [dm3] 3L_5704237_MNP [dm6]	TAT	CCA	2.861e^-4	0.975	INTRON sif
3L	5697341	3L_5697341_MNP [dm3] 3L_5704241_MNP [dm6]	GTATA	TAGGT	2.861e^-4	0.975	INTRON sif
2L	13296427	2L_13296427_SNP [dm3] 2L_13296427_SNP [dm6]	A	T	2.865e^-4	0.975	UTR_5_PRIME CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4100681	3L_4100681_DEL [dm3] 3L_4100681_DEL [dm6]	CTC	C	2.866e^-4	0.975	INTRON CG14995
2R	9615681	2R_9615681_SNP [dm3] 2R_13728176_SNP [dm6]	T	A	2.892e^-4	0.975	INTRON fas
2R	1762089	2R_1762089_SNP [dm3] 2R_5874584_SNP [dm6]	G	A	2.908e^-4	0.975	INTERGENIC
3R	5663533	3R_5663533_SNP [dm3] 3R_9837811_SNP [dm6]	G	A	2.908e^-4	0.975	INTRON Teh1
3R	26935733	3R_26935733_SNP [dm3] 3R_31110011_SNP [dm6]	T	A	2.914e^-4	0.975	UPSTREAM CG11318 INTERGENIC
2L	5737537	2L_5737537_SNP [dm3] 2L_5737537_SNP [dm6]	T	G	2.914e^-4	0.975	INTRON CG11030 & 1 other
2L	16695263	2L_16695263_SNP [dm3] 2L_16695263_SNP [dm6]	T	A	2.917e^-4	0.975	UPSTREAM grp INTRON grp
3R	5685694	3R_5685694_SNP [dm3] 3R_9859972_SNP [dm6]	A	T	2.921e^-4	0.975	INTRON Teh1
3L	14154546	3L_14154546_SNP [dm3] 3L_14161446_SNP [dm6]	G	T	2.937e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
2L	9271631	2L_9271631_SNP [dm3] 2L_9271631_SNP [dm6]	C	T	2.949e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	15974992	3R_15974992_SNP [dm3] 3R_20149270_SNP [dm6]	T	A	2.956e^-4	0.975	INTERGENIC
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	2.958e^-4	0.975	INTRON klar	TF binding site mE1_TFBS_Trl
3L	12406363	3L_12406363_SNP [dm3] 3L_12413263_SNP [dm6]	T	A	2.960e^-4	0.975	INTRON CG32103
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	2.960e^-4	0.975	INTRON CG32103
3R	2428464	3R_2428464_SNP [dm3] 3R_6602742_SNP [dm6]	G	T	2.973e^-4	0.975	DOWNSTREAM CG31482 INTERGENIC	transposable element FlyBase
3L	4245396	3L_4245396_SNP [dm3] 3L_4245396_SNP [dm6]	C	T	2.983e^-4	0.975	SYNONYMOUS_CODING pav DOWNSTREAM ago	TF binding site mE1_TFBS_sens
2L	12977807	2L_12977807_SNP [dm3] 2L_12977807_SNP [dm6]	C	T	2.996e^-4	0.975	SYNONYMOUS_CODING Vha68-2 UPSTREAM Vha68-3	TF binding site mE1_TFBS_HSA
3L	22885109	3L_22885109_SNP [dm3] 3L_22892009_SNP [dm6]	A	G	2.997e^-4	0.975	NON_SYNONYMOUS_CODING slif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14572484	2R_14572484_SNP [dm3] 2R_18684979_SNP [dm6]	T	A	3.019e^-4	0.975	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7274484	2L_7274484_SNP [dm3] 2L_7274484_SNP [dm6]	C	T	3.026e^-4	0.975	INTRON Wnt4
2R	1426683	2R_1426683_SNP [dm3] 2R_5539178_SNP [dm6]	T	C	3.038e^-4	0.975	INTRON CG30438
3L	5664449	3L_5664449_SNP [dm3] 3L_5671349_SNP [dm6]	A	C	3.075e^-4	0.975	INTRON sif
2R	12604445	2R_12604445_SNP [dm3] 2R_16716940_SNP [dm6]	C	T	3.076e^-4	0.975	INTRON CG30463
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	3.090e^-4	0.975	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
X	20028038	X_20028038_SNP [dm3] X_20134005_SNP [dm6]	G	C	3.094e^-4	0.975	NON_SYNONYMOUS_CODING CG15322
3L	13416034	3L_13416034_SNP [dm3] 3L_13422934_SNP [dm6]	T	C	3.095e^-4	0.975	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
3L	17104173	3L_17104173_SNP [dm3] 3L_17111073_SNP [dm6]	T	G	3.098e^-4	0.975	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7027314	3L_7027314_SNP [dm3] 3L_7034214_SNP [dm6]	C	T	3.098e^-4	0.975	INTRON Mp
X	3759805	X_3759805_SNP [dm3] X_3865772_SNP [dm6]	A	G	3.099e^-4	0.975	INTRON yin
X	19903330	X_19903330_SNP [dm3] X_20009297_SNP [dm6]	G	A	3.112e^-4	0.975	INTRON Dop2R
X	7067731	X_7067731_INS [dm3] X_7173698_INS [dm6]	A	ATCATCA	3.123e^-4	0.975	INTRON CG9650 & 1 other EXON CR44357
2L	9271603	2L_9271603_SNP [dm3] 2L_9271603_SNP [dm6]	T	A	3.125e^-4	0.975	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3L	746516	3L_746516_SNP [dm3] 3L_746516_SNP [dm6]	G	A	3.129e^-4	0.975	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	746528	3L_746528_SNP [dm3] 3L_746528_SNP [dm6]	T	C	3.129e^-4	0.975	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1277481	3L_1277481_SNP [dm3] 3L_1277481_SNP [dm6]	C	T	3.130e^-4	0.975	INTRON CG32333
3L	1278516	3L_1278516_SNP [dm3] 3L_1278516_SNP [dm6]	C	G	3.130e^-4	0.975	INTRON CG32333
2R	15127730	2R_15127730_SNP [dm3] 2R_19240225_SNP [dm6]	G	T	3.139e^-4	0.975	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6469808	2R_6469808_SNP [dm3] 2R_10582303_SNP [dm6]	C	G	3.140e^-4	0.975	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
3L	13857042	3L_13857042_SNP [dm3] 3L_13863942_SNP [dm6]	T	G	3.157e^-4	0.975	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6267497	2R_6267497_SNP [dm3] 2R_10379992_SNP [dm6]	A	T	3.179e^-4	0.975	UTR_5_PRIME Ir47a INTRON CG42732
3L	14161742	3L_14161742_SNP [dm3] 3L_14168642_SNP [dm6]	T	G	3.208e^-4	0.975	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2787480	3L_2787480_SNP [dm3] 3L_2787480_SNP [dm6]	C	T	3.217e^-4	0.975	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5162297	2L_5162297_SNP [dm3] 2L_5162297_SNP [dm6]	A	C	3.226e^-4	0.975	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3R	1112754	3R_1112754_SNP [dm3] 3R_5287032_SNP [dm6]	A	G	3.231e^-4	0.975	UTR_5_PRIME mtd INTRON mtd
3R	1112755	3R_1112755_SNP [dm3] 3R_5287033_SNP [dm6]	G	C	3.231e^-4	0.975	START_GAINED mtd UTR_5_PRIME mtd INTRON mtd
2R	17740207	2R_17740207_SNP [dm3] 2R_21852702_SNP [dm6]	C	A	3.235e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14002440	3L_14002440_SNP [dm3] 3L_14009340_SNP [dm6]	T	C	3.243e^-4	0.975	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19388271	2R_19388271_SNP [dm3] 2R_23500748_SNP [dm6]	A	G	3.247e^-4	0.975	DOWNSTREAM CG13558 INTERGENIC
2R	19388275	2R_19388275_SNP [dm3] 2R_23500752_SNP [dm6]	T	G	3.247e^-4	0.975	DOWNSTREAM CG13558 INTERGENIC
2R	15862901	2R_15862901_SNP [dm3] 2R_19975396_SNP [dm6]	C	T	3.266e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	514962	2L_514962_SNP [dm3] 2L_514962_SNP [dm6]	A	C	3.276e^-4	0.975	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1411398	2R_1411398_SNP [dm3] 2R_5523893_SNP [dm6]	C	G	3.277e^-4	0.975	UPSTREAM CG30438 INTRON CG30438
X	3484888	X_3484888_SNP [dm3] X_3590855_SNP [dm6]	C	G	3.283e^-4	0.975	INTRON AstA-R1
3L	8811881	3L_8811881_SNP [dm3] 3L_8818781_SNP [dm6]	A	G	3.306e^-4	0.975	INTERGENIC
3L	10529693	3L_10529693_SNP [dm3] 3L_10536593_SNP [dm6]	T	A	3.313e^-4	0.975	INTRON A2bp1
X	14101223	X_14101223_SNP [dm3] X_14207190_SNP [dm6]	C	T	3.316e^-4	0.975	INTRON l_1_G0007 & 1 other
2R	6741949	2R_6741949_INS [dm3] 2R_10854444_INS [dm6]	A	ACATTATGCTTAAA...	3.337e^-4	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2R	1752922	2R_1752922_SNP [dm3] 2R_5865417_SNP [dm6]	A	G	3.344e^-4	0.975	INTERGENIC
2L	6752117	2L_6752117_SNP [dm3] 2L_6752117_SNP [dm6]	T	C	3.355e^-4	0.975	INTRON CG11221
2R	10774664	2R_10774664_SNP [dm3] 2R_14887159_SNP [dm6]	A	G	3.360e^-4	0.975	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
2L	515184	2L_515184_SNP [dm3] 2L_515184_SNP [dm6]	G	A	3.362e^-4	0.975	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15911850	2R_15911850_SNP [dm3] 2R_20024345_SNP [dm6]	G	C	3.362e^-4	0.975	INTERGENIC
2R	15911872	2R_15911872_DEL [dm3] 2R_20024367_DEL [dm6]	TT	T	3.362e^-4	0.975	INTERGENIC
3L	18221526	3L_18221526_SNP [dm3] 3L_18228426_SNP [dm6]	T	C	3.368e^-4	0.975	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8802826	2L_8802826_SNP [dm3] 2L_8802826_SNP [dm6]	T	C	3.376e^-4	0.975	INTERGENIC
2R	14706448	2R_14706448_INS [dm3] 2R_18818943_INS [dm6]	C	CA	3.389e^-4	0.975	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13031225	3L_13031225_SNP [dm3] 3L_13038125_SNP [dm6]	G	A	3.390e^-4	0.975	SYNONYMOUS_CODING SRm160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	20671763	X_20671763_SNP [dm3] X_20800736_SNP [dm6]	A	T	3.390e^-4	0.975	INTRON shakB	TF binding site mE1_TFBS_HSA
X	3347122	X_3347122_SNP [dm3] X_3453089_SNP [dm6]	C	T	3.398e^-4	0.975	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	2615454	2R_2615454_SNP [dm3] 2R_6727949_SNP [dm6]	T	C	3.401e^-4	0.975	UTR_3_PRIME l_2_01289 INTRON l_2_01289
2R	17645567	2R_17645567_SNP [dm3] 2R_21758062_SNP [dm6]	T	C	3.412e^-4	0.975	DOWNSTREAM Grx-1 INTERGENIC
2L	3708890	2L_3708890_SNP [dm3] 2L_3708890_SNP [dm6]	T	A	3.421e^-4	0.975	INTRON cutlet	TF binding site mE1_TFBS_cad
3L	2554647	3L_2554647_SNP [dm3] 3L_2554647_SNP [dm6]	A	C	3.427e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	4068127	X_4068127_SNP [dm3] X_4174094_SNP [dm6]	T	C	3.430e^-4	0.975	INTRON Fas2
X	4068131	X_4068131_SNP [dm3] X_4174098_SNP [dm6]	G	C	3.430e^-4	0.975	INTRON Fas2
3L	19320307	3L_19320307_SNP [dm3] 3L_19327207_SNP [dm6]	A	C	3.440e^-4	0.975	INTRON pip
3L	17493227	3L_17493227_SNP [dm3] 3L_17500127_SNP [dm6]	C	A	3.453e^-4	0.975	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14333505	2L_14333505_SNP [dm3] 2L_14333505_SNP [dm6]	C	G	3.455e^-4	0.975	SYNONYMOUS_CODING ms_2_34Fe UPSTREAM CG33090
2L	8849044	2L_8849044_SNP [dm3] 2L_8849044_SNP [dm6]	C	A	3.455e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2R	1425652	2R_1425652_SNP [dm3] 2R_5538147_SNP [dm6]	A	T	3.462e^-4	0.975	INTRON CG30438	transposable element FlyBase
3R	15969924	3R_15969924_SNP [dm3] 3R_20144202_SNP [dm6]	A	G	3.475e^-4	0.975	INTERGENIC
X	5459364	X_5459364_SNP [dm3] X_5565331_SNP [dm6]	T	C	3.503e^-4	0.975	INTERGENIC
X	14286135	X_14286135_SNP [dm3] X_14392102_SNP [dm6]	C	A	3.509e^-4	0.975	INTRON dpr8
3R	14678660	3R_14678660_SNP [dm3] 3R_18852938_SNP [dm6]	A	T	3.534e^-4	0.975	INTERGENIC
3L	12310194	3L_12310194_SNP [dm3] 3L_12317094_SNP [dm6]	G	A	3.534e^-4	0.975	INTERGENIC
2L	5414519	2L_5414519_SNP [dm3] 2L_5414519_SNP [dm6]	C	A	3.536e^-4	0.975	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	3.537e^-4	0.975	INTERGENIC
3R	1869107	3R_1869107_SNP [dm3] 3R_6043385_SNP [dm6]	A	G	3.543e^-4	0.975	INTERGENIC
3R	17224149	3R_17224149_SNP [dm3] 3R_21398427_SNP [dm6]	G	A	3.547e^-4	0.975	SYNONYMOUS_CODING CG6475
3L	5344669	3L_5344669_SNP [dm3] 3L_5351569_SNP [dm6]	C	T	3.555e^-4	0.975	UPSTREAM lama INTRON lama
3L	18139912	3L_18139912_SNP [dm3] 3L_18146812_SNP [dm6]	T	A	3.569e^-4	0.975	INTERGENIC
2L	11945519	2L_11945519_SNP [dm3] 2L_11945519_SNP [dm6]	T	C	3.575e^-4	0.975	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14684443	3R_14684443_DEL [dm3] 3R_18858721_DEL [dm6]	CCAACCAAAAAAATC...	C	3.583e^-4	0.975	INTERGENIC
3L	15716417	3L_15716417_SNP [dm3] 3L_15723317_SNP [dm6]	G	A	3.587e^-4	0.975	INTRON comm
3L	4693096	3L_4693096_SNP [dm3] 3L_4693096_SNP [dm6]	G	C	3.594e^-4	0.975	UTR_5_PRIME RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	5742180	2L_5742180_SNP [dm3] 2L_5742180_SNP [dm6]	T	A	3.596e^-4	0.975	UPSTREAM CG11147 INTRON CG11030	TF binding site mE1_TFBS_inv
3R	6905168	3R_6905168_SNP [dm3] 3R_11079446_SNP [dm6]	T	C	3.608e^-4	0.975	INTERGENIC
2R	18755771	2R_18755771_SNP [dm3] 2R_22868248_SNP [dm6]	T	C	3.609e^-4	0.975	UTR_5_PRIME fd59A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16371035	2R_16371035_SNP [dm3] 2R_20483530_SNP [dm6]	G	T	3.619e^-4	0.975	INTERGENIC
3R	2467572	3R_2467572_SNP [dm3] 3R_6641850_SNP [dm6]	T	C	3.624e^-4	0.975	SPLICE_SITE_REGION CG31286 DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	3.629e^-4	0.975	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14154548	3L_14154548_SNP [dm3] 3L_14161448_SNP [dm6]	A	C	3.637e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3R	9548071	3R_9548071_SNP [dm3] 3R_13722349_SNP [dm6]	C	T	3.645e^-4	0.975	INTRON CG34383
2R	1397440	2R_1397440_SNP [dm3] 2R_5509935_SNP [dm6]	C	A	3.650e^-4	0.975	INTRON CG30438
3L	13330228	3L_13330228_SNP [dm3] 3L_13337128_SNP [dm6]	T	G	3.663e^-4	0.975	INTERGENIC
2R	6687286	2R_6687286_SNP [dm3] 2R_10799781_SNP [dm6]	G	C	3.688e^-4	0.975	DOWNSTREAM wde INTERGENIC
3R	15975030	3R_15975030_SNP [dm3] 3R_20149308_SNP [dm6]	G	A	3.688e^-4	0.975	INTERGENIC
3R	19835615	3R_19835615_SNP [dm3] 3R_24009893_SNP [dm6]	T	C	3.708e^-4	0.975	INTRON KrT95D
2L	21840147	2L_21840147_SNP [dm3] 2L_21840147_SNP [dm6]	G	A	3.712e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_sens
2L	21840156	2L_21840156_SNP [dm3] 2L_21840156_SNP [dm6]	G	T	3.712e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5684201	2L_5684201_SNP [dm3] 2L_5684201_SNP [dm6]	T	A	3.719e^-4	0.975	INTERGENIC
3L	4376078	3L_4376078_SNP [dm3] 3L_4376078_SNP [dm6]	A	T	3.729e^-4	0.975	INTRON DopEcR
3L	2210696	3L_2210696_SNP [dm3] 3L_2210696_SNP [dm6]	A	G	3.741e^-4	0.975	DOWNSTREAM CG15878 INTERGENIC
2R	4773319	2R_4773319_SNP [dm3] 2R_8885814_SNP [dm6]	C	T	3.770e^-4	0.975	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20039521	X_20039521_INS [dm3] X_20145488_INS [dm6]	T	TTTAGTGTTATT...	3.774e^-4	0.975	INTERGENIC	transposable element FlyBase
2R	9867005	2R_9867005_SNP [dm3] 2R_13979500_SNP [dm6]	A	C	3.777e^-4	0.975	START_GAINED CG6701 UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7074622	3L_7074622_SNP [dm3] 3L_7081522_SNP [dm6]	A	G	3.779e^-4	0.975	INTERGENIC
X	19044375	X_19044375_SNP [dm3] X_19150342_SNP [dm6]	A	G	3.823e^-4	0.975	INTRON RhoGAP18B
3L	11177604	3L_11177604_SNP [dm3] 3L_11184504_SNP [dm6]	A	G	3.829e^-4	0.975	INTRON GlcAT-P
3R	25999629	3R_25999629_SNP [dm3] 3R_30173907_SNP [dm6]	G	A	3.838e^-4	0.975	INTRON Mlc2
3R	974974	3R_974974_SNP [dm3] 3R_5149252_SNP [dm6]	A	G	3.847e^-4	0.975	INTERGENIC
2L	9532172	2L_9532172_SNP [dm3] 2L_9532172_SNP [dm6]	C	T	3.850e^-4	0.975	INTRON Oatp30B	TF binding site mE1_TFBS_sens
2R	15938914	2R_15938914_SNP [dm3] 2R_20051409_SNP [dm6]	G	T	3.853e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13376956	3L_13376956_SNP [dm3] 3L_13383856_SNP [dm6]	C	A	3.861e^-4	0.975	NON_SYNONYMOUS_CODING ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	13457797	3L_13457797_SNP [dm3] 3L_13464697_SNP [dm6]	T	A	3.877e^-4	0.975	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6285305	X_6285305_DEL [dm3] X_6391272_DEL [dm6]	CCA	T	3.892e^-4	0.975	INTERGENIC
2R	15909632	2R_15909632_SNP [dm3] 2R_20022127_SNP [dm6]	A	T	3.894e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4636119	3L_4636119_SNP [dm3] 3L_4636119_SNP [dm6]	A	G	3.896e^-4	0.975	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2L	10575055	2L_10575055_SNP [dm3] 2L_10575055_SNP [dm6]	A	T	3.901e^-4	0.975	DOWNSTREAM w-cup INTRON Trim9
2L	5251641	2L_5251641_SNP [dm3] 2L_5251641_SNP [dm6]	T	C	3.901e^-4	0.975	INTRON tkv
2L	5251643	2L_5251643_SNP [dm3] 2L_5251643_SNP [dm6]	G	A	3.901e^-4	0.975	INTRON tkv
X	17484757	X_17484757_SNP [dm3] X_17590724_SNP [dm6]	T	A	3.901e^-4	0.975	NON_SYNONYMOUS_CODING CG12992 INTRON CG12991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17484785	X_17484785_SNP [dm3] X_17590752_SNP [dm6]	G	C	3.901e^-4	0.975	NON_SYNONYMOUS_CODING CG12992 INTRON CG12991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1385197	2R_1385197_SNP [dm3] 2R_5497692_SNP [dm6]	A	G	3.907e^-4	0.975	INTRON CG30438
3R	24786773	3R_24786773_SNP [dm3] 3R_28961051_SNP [dm6]	A	G	3.926e^-4	0.975	INTRON CG14521
3L	2554557	3L_2554557_SNP [dm3] 3L_2554557_SNP [dm6]	G	A	3.944e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554562	3L_2554562_SNP [dm3] 3L_2554562_SNP [dm6]	T	C	3.944e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554661	3L_2554661_SNP [dm3] 3L_2554661_SNP [dm6]	C	G	3.944e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	20573621	3R_20573621_SNP [dm3] 3R_24747899_SNP [dm6]	A	G	3.953e^-4	0.975	SYNONYMOUS_CODING tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	1278453	3L_1278453_SNP [dm3] 3L_1278453_SNP [dm6]	T	C	3.955e^-4	0.975	INTRON CG32333
3L	19239739	3L_19239739_SNP [dm3] 3L_19246639_SNP [dm6]	G	T	3.963e^-4	0.975	INTERGENIC
2L	8367805	2L_8367805_SNP [dm3] 2L_8367805_SNP [dm6]	C	T	3.991e^-4	0.975	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1145287	3L_1145287_DEL [dm3] 3L_1145287_DEL [dm6]	TGTTACTACTCCGCAGCTTT...	T	3.995e^-4	0.975	INTRON bab2
3L	1145315	3L_1145315_SNP [dm3] 3L_1145315_SNP [dm6]	A	C	3.995e^-4	0.975	INTRON bab2
2R	4446882	2R_4446882_SNP [dm3] 2R_8559377_SNP [dm6]	T	C	4.005e^-4	0.975	UPSTREAM CR45308 INTERGENIC
X	11677709	X_11677709_SNP [dm3] X_11783676_SNP [dm6]	T	G	4.005e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13870787	3L_13870787_SNP [dm3] 3L_13877687_SNP [dm6]	C	T	4.006e^-4	0.975	INTRON dysc
2R	18451769	2R_18451769_SNP [dm3] 2R_22564264_SNP [dm6]	C	T	4.008e^-4	0.975	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1278304	3L_1278304_SNP [dm3] 3L_1278304_SNP [dm6]	A	G	4.008e^-4	0.975	INTRON CG32333
2L	13825507	2L_13825507_SNP [dm3] 2L_13825507_SNP [dm6]	G	A	4.034e^-4	0.975	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2424469	2L_2424469_SNP [dm3] 2L_2424469_SNP [dm6]	A	G	4.043e^-4	0.975	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424530	2L_2424530_SNP [dm3] 2L_2424530_SNP [dm6]	G	T	4.043e^-4	0.975	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424807	2L_2424807_SNP [dm3] 2L_2424807_SNP [dm6]	C	G	4.043e^-4	0.975	START_GAINED CG44139 UTR_5_PRIME CG44139 DOWNSTREAM CG9886
2L	5733573	2L_5733573_SNP [dm3] 2L_5733573_SNP [dm6]	T	G	4.053e^-4	0.975	DOWNSTREAM CG11147 INTRON CG11030
3L	3017673	3L_3017673_SNP [dm3] 3L_3017673_SNP [dm6]	T	A	4.054e^-4	0.975	UPSTREAM CG32487 INTERGENIC
3L	1323325	3L_1323325_SNP [dm3] 3L_1323325_SNP [dm6]	T	A	4.082e^-4	0.975	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA
2L	18626959	2L_18626959_SNP [dm3] 2L_18626959_SNP [dm6]	A	T	4.104e^-4	0.975	INTRON MESR3	TF binding site mE1_TFBS_Trl
3L	15609652	3L_15609652_SNP [dm3] 3L_15616552_SNP [dm6]	T	G	4.106e^-4	0.975	INTRON comm3
X	13091054	X_13091054_SNP [dm3] X_13197021_SNP [dm6]	A	C	4.111e^-4	0.975	INTRON sno	TF binding site mE1_TFBS_sens
2R	14424853	2R_14424853_SNP [dm3] 2R_18537348_SNP [dm6]	C	T	4.114e^-4	0.975	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12701588	3L_12701588_SNP [dm3] 3L_12708488_SNP [dm6]	A	G	4.117e^-4	0.975	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20533859	3R_20533859_SNP [dm3] 3R_24708137_SNP [dm6]	T	G	4.123e^-4	0.975	UTR_3_PRIME slo DOWNSTREAM slo
3L	4637268	3L_4637268_SNP [dm3] 3L_4637268_SNP [dm6]	T	C	4.133e^-4	0.975	UTR_3_PRIME axo INTRON axo
X	3759797	X_3759797_SNP [dm3] X_3865764_SNP [dm6]	C	T	4.148e^-4	0.975	INTRON yin
2R	17159189	2R_17159189_SNP [dm3] 2R_21271684_SNP [dm6]	G	A	4.157e^-4	0.975	INTRON Rgk3
3L	16415271	3L_16415271_SNP [dm3] 3L_16422171_SNP [dm6]	G	T	4.169e^-4	0.975	NON_SYNONYMOUS_CODING CG33158 DOWNSTREAM dsx-c73A	TF binding site mE1_TFBS_cad
2R	6737626	2R_6737626_SNP [dm3] 2R_10850121_SNP [dm6]	C	A	4.176e^-4	0.975	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	6765194	2R_6765194_SNP [dm3] 2R_10877689_SNP [dm6]	A	G	4.179e^-4	0.975	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
2L	11578518	2L_11578518_SNP [dm3] 2L_11578518_SNP [dm6]	C	T	4.187e^-4	0.975	INTERGENIC
3L	1279087	3L_1279087_DEL [dm3] 3L_1279087_DEL [dm6]	TATT	T	4.192e^-4	0.975	INTRON CG32333
3L	14053808	3L_14053808_SNP [dm3] 3L_14060708_SNP [dm6]	T	C	4.214e^-4	0.975	INTRON CG32138
2R	12396955	2R_12396955_SNP [dm3] 2R_16509450_SNP [dm6]	T	C	4.242e^-4	0.975	INTRON Sema-2a
3L	2787522	3L_2787522_SNP [dm3] 3L_2787522_SNP [dm6]	G	T	4.248e^-4	0.975	UTR_3_PRIME CG43444	TF binding site mE1_TFBS_HSA
2R	3019215	2R_3019215_SNP [dm3] 2R_7131710_SNP [dm6]	G	A	4.256e^-4	0.975	NON_SYNONYMOUS_CODING Cyp9b2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	525197	2L_525197_SNP [dm3] 2L_525197_SNP [dm6]	C	T	4.278e^-4	0.975	INTRON ush	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	5733619	2L_5733619_INS [dm3] 2L_5733619_INS [dm6]	T	TT	4.278e^-4	0.975	DOWNSTREAM CG11147 INTRON CG11030
2L	5733666	2L_5733666_SNP [dm3] 2L_5733666_SNP [dm6]	C	T	4.278e^-4	0.975	DOWNSTREAM CG11147 INTRON CG11030
3L	9062094	3L_9062094_SNP [dm3] 3L_9068994_SNP [dm6]	C	G	4.278e^-4	0.975	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
3R	16089418	3R_16089418_SNP [dm3] 3R_20263696_SNP [dm6]	A	G	4.278e^-4	0.975	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	26141337	3R_26141337_DEL [dm3] 3R_30315615_DEL [dm6]	CC	C	4.278e^-4	0.975	INTRON hdc
3R	7286509	3R_7286509_SNP [dm3] 3R_11460787_SNP [dm6]	G	C	4.279e^-4	0.975	UPSTREAM PGRP-LB INTRON CG17230
2R	3956973	2R_3956973_SNP [dm3] 2R_8069468_SNP [dm6]	C	T	4.287e^-4	0.975	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	22221270	X_22221270_SNP [dm3] X_22819434_SNP [dm6]	G	A	4.290e^-4	0.975	INTERGENIC
2R	16435589	2R_16435589_SNP [dm3] 2R_20548084_SNP [dm6]	A	G	4.305e^-4	0.975	NON_SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
2R	13797505	2R_13797505_SNP [dm3] 2R_17910000_SNP [dm6]	G	A	4.308e^-4	0.975	INTRON Elk
2L	9493550	2L_9493550_INS [dm3] 2L_9493550_INS [dm6]	A	AA	4.312e^-4	0.975	INTRON Gdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	4.331e^-4	0.975	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	19894083	2R_19894083_SNP [dm3] 2R_24006560_SNP [dm6]	A	G	4.334e^-4	0.975	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7873097	2L_7873097_DEL [dm3] 2L_7873097_DEL [dm6]	ACCACCTGACA...	A	4.344e^-4	0.975	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2R	6152153	2R_6152153_INS [dm3] 2R_10264648_INS [dm6]	C	CCTCACTAC	4.356e^-4	0.975	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6152158	2R_6152158_SNP [dm3] 2R_10264653_SNP [dm6]	T	A	4.356e^-4	0.975	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6152166	2R_6152166_SNP [dm3] 2R_10264661_SNP [dm6]	A	C	4.356e^-4	0.975	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13797536	2R_13797536_SNP [dm3] 2R_17910031_SNP [dm6]	A	C	4.356e^-4	0.975	INTRON Elk
2R	10667162	2R_10667162_SNP [dm3] 2R_14779657_SNP [dm6]	G	A	4.358e^-4	0.975	INTRON kn	TF binding site BDTNP1_TFBS_z
3L	4636520	3L_4636520_SNP [dm3] 3L_4636520_SNP [dm6]	A	T	4.360e^-4	0.975	DOWNSTREAM axo INTRON axo
3L	18142795	3L_18142795_SNP [dm3] 3L_18149695_SNP [dm6]	T	G	4.377e^-4	0.975	INTRON CG7330
X	3765095	X_3765095_SNP [dm3] X_3871062_SNP [dm6]	A	T	4.386e^-4	0.975	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
2R	14721884	2R_14721884_SNP [dm3] 2R_18834379_SNP [dm6]	T	C	4.393e^-4	0.975	NON_SYNONYMOUS_CODING CG15098 UPSTREAM CG15083
2R	1425655	2R_1425655_SNP [dm3] 2R_5538150_SNP [dm6]	A	T	4.396e^-4	0.975	INTRON CG30438	transposable element FlyBase
3L	18142776	3L_18142776_SNP [dm3] 3L_18149676_SNP [dm6]	A	T	4.399e^-4	0.975	INTRON CG7330
X	9799779	X_9799779_SNP [dm3] X_9905746_SNP [dm6]	G	C	4.418e^-4	0.975	INTERGENIC
2R	1411969	2R_1411969_SNP [dm3] 2R_5524464_SNP [dm6]	A	G	4.429e^-4	0.975	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
3L	13844706	3L_13844706_SNP [dm3] 3L_13851606_SNP [dm6]	A	G	4.433e^-4	0.975	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13844823	3L_13844823_SNP [dm3] 3L_13851723_SNP [dm6]	C	A	4.433e^-4	0.975	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
2R	1380484	2R_1380484_SNP [dm3] 2R_5492979_SNP [dm6]	A	T	4.434e^-4	0.975	INTRON CG30440
3L	4642522	3L_4642522_SNP [dm3] 3L_4642522_SNP [dm6]	T	G	4.448e^-4	0.975	UTR_3_PRIME axo INTRON axo
2L	9877404	2L_9877404_SNP [dm3] 2L_9877404_SNP [dm6]	T	A	4.474e^-4	0.975	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3L	2554560	3L_2554560_SNP [dm3] 3L_2554560_SNP [dm6]	A	G	4.478e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3R	21339069	3R_21339069_SNP [dm3] 3R_25513347_SNP [dm6]	A	G	4.482e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1453497	2L_1453497_SNP [dm3] 2L_1453497_SNP [dm6]	T	C	4.483e^-4	0.975	INTERGENIC
X	8909782	X_8909782_SNP [dm3] X_9015749_SNP [dm6]	C	T	4.487e^-4	0.975	INTRON CR43836 & 1 other
3L	11171089	3L_11171089_SNP [dm3] 3L_11177989_SNP [dm6]	A	G	4.495e^-4	0.975	UTR_3_PRIME GlcAT-P
3L	1145165	3L_1145165_SNP [dm3] 3L_1145165_SNP [dm6]	A	C	4.503e^-4	0.975	INTRON bab2
3R	16815175	3R_16815175_SNP [dm3] 3R_20989453_SNP [dm6]	C	G	4.507e^-4	0.975	START_GAINED Calx UTR_5_PRIME Calx UPSTREAM Calx INTRON Calx
3L	10005870	3L_10005870_SNP [dm3] 3L_10012770_SNP [dm6]	T	A	4.508e^-4	0.975	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10006007	3L_10006007_SNP [dm3] 3L_10012907_SNP [dm6]	G	C	4.508e^-4	0.975	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6152124	2R_6152124_INS [dm3] 2R_10264619_INS [dm6]	T	TAAAT	4.510e^-4	0.975	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16937903	2R_16937903_SNP [dm3] 2R_21050398_SNP [dm6]	A	G	4.515e^-4	0.975	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	14317932	3L_14317932_SNP [dm3] 3L_14324832_SNP [dm6]	G	C	4.550e^-4	0.975	INTRON fz & 1 other
3R	20028332	3R_20028332_SNP [dm3] 3R_24202610_SNP [dm6]	T	C	4.561e^-4	0.975	INTRON twin
3L	18142811	3L_18142811_INS [dm3] 3L_18149711_INS [dm6]	A	AAT	4.623e^-4	0.975	INTRON CG7330
3L	1146549	3L_1146549_SNP [dm3] 3L_1146549_SNP [dm6]	T	C	4.628e^-4	0.975	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5743589	2L_5743589_SNP [dm3] 2L_5743589_SNP [dm6]	G	A	4.630e^-4	0.975	INTRON CG11030
3R	19739521	3R_19739521_SNP [dm3] 3R_23913799_SNP [dm6]	T	G	4.631e^-4	0.975	SYNONYMOUS_CODING sba	TF binding site mE1_TFBS_Kr
3R	10273921	3R_10273921_SNP [dm3] 3R_14448199_SNP [dm6]	A	T	4.687e^-4	0.975	INTRON cv-c
2L	21779927	2L_21779927_INS [dm3] 2L_21779927_INS [dm6]	C	ATATCGATATTAATTGCGGA...	4.744e^-4	0.975	INTRON CG31612	transposable element FlyBase
2R	13995247	2R_13995247_SNP [dm3] 2R_18107742_SNP [dm6]	T	G	4.750e^-4	0.975	INTRON CG5756
2R	4077636	2R_4077636_SNP [dm3] 2R_8190131_SNP [dm6]	C	A	4.768e^-4	0.975	INTRON LRP1
X	3295798	X_3295798_SNP [dm3] X_3401765_SNP [dm6]	A	G	4.771e^-4	0.975	INTRON CR44999 & 1 other
2L	17521767	2L_17521767_SNP [dm3] 2L_17521767_SNP [dm6]	G	C	4.778e^-4	0.975	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2R	17582635	2R_17582635_SNP [dm3] 2R_21695130_SNP [dm6]	G	C	4.787e^-4	0.975	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10607802	3R_10607802_SNP [dm3] 3R_14782080_SNP [dm6]	T	A	4.787e^-4	0.975	INTRON jvl
3L	2711077	3L_2711077_SNP [dm3] 3L_2711077_SNP [dm6]	A	T	4.793e^-4	0.975	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16754916	2R_16754916_SNP [dm3] 2R_20867411_SNP [dm6]	G	T	4.799e^-4	0.975	DOWNSTREAM CG15227 INTERGENIC
2R	15911839	2R_15911839_SNP [dm3] 2R_20024334_SNP [dm6]	A	G	4.802e^-4	0.975	INTERGENIC
3L	2996066	3L_2996066_SNP [dm3] 3L_2996066_SNP [dm6]	A	G	4.807e^-4	0.975	UTR_3_PRIME CG2113
2R	10188146	2R_10188146_SNP [dm3] 2R_14300641_SNP [dm6]	C	T	4.826e^-4	0.975	SYNONYMOUS_CODING tej DOWNSTREAM Ih
3L	13869082	3L_13869082_SNP [dm3] 3L_13875982_SNP [dm6]	C	T	4.834e^-4	0.975	INTRON dysc
3L	5305132	3L_5305132_SNP [dm3] 3L_5312032_SNP [dm6]	T	A	4.840e^-4	0.975	INTERGENIC
X	19618191	X_19618191_SNP [dm3] X_19724158_SNP [dm6]	G	T	4.855e^-4	0.975	INTRON CG12531
3R	18620813	3R_18620813_SNP [dm3] 3R_22795091_SNP [dm6]	A	G	4.858e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_bab1
X	3458640	X_3458640_SNP [dm3] X_3564607_SNP [dm6]	G	T	4.875e^-4	0.975	INTRON CG32791 & 1 other
3L	4636110	3L_4636110_SNP [dm3] 3L_4636110_SNP [dm6]	T	G	4.878e^-4	0.975	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	4636132	3L_4636132_SNP [dm3] 3L_4636132_SNP [dm6]	T	A	4.878e^-4	0.975	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	1145320	3L_1145320_DEL [dm3] 3L_1145320_DEL [dm6]	TTGT	T	4.883e^-4	0.975	INTRON bab2
3R	15973478	3R_15973478_SNP [dm3] 3R_20147756_SNP [dm6]	A	G	4.889e^-4	0.975	INTERGENIC
X	11677674	X_11677674_SNP [dm3] X_11783641_SNP [dm6]	A	T	4.896e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2554567	3L_2554567_SNP [dm3] 3L_2554567_SNP [dm6]	C	A	4.899e^-4	0.975	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
2R	19387981	2R_19387981_SNP [dm3] 2R_23500458_SNP [dm6]	T	C	4.902e^-4	0.975	UTR_3_PRIME CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11191224	3L_11191224_SNP [dm3] 3L_11198124_SNP [dm6]	A	G	4.903e^-4	0.975	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
3L	18603674	3L_18603674_SNP [dm3] 3L_18610574_SNP [dm6]	T	G	4.907e^-4	0.975	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3L	9478303	3L_9478303_SNP [dm3] 3L_9485203_SNP [dm6]	C	A	4.911e^-4	0.975	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16425484	X_16425484_INS [dm3] X_16531451_INS [dm6]	A	AAGCAGAG	4.911e^-4	0.975	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11365346	3L_11365346_SNP [dm3] 3L_11372246_SNP [dm6]	G	A	4.912e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	6657355	2R_6657355_SNP [dm3] 2R_10769850_SNP [dm6]	A	G	4.912e^-4	0.975	INTRON CG33144
X	19097535	X_19097535_SNP [dm3] X_19203502_SNP [dm6]	A	C	4.936e^-4	0.975	INTRON Ulp1
2R	15844029	2R_15844029_SNP [dm3] 2R_19956524_SNP [dm6]	T	C	4.939e^-4	0.975	NON_SYNONYMOUS_CODING CG44623
3R	19964797	3R_19964797_SNP [dm3] 3R_24139075_SNP [dm6]	C	T	4.946e^-4	0.975	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7861389	3L_7861389_SNP [dm3] 3L_7868289_SNP [dm6]	G	C	4.948e^-4	0.975	UPSTREAM Pdp1 & 1 other INTERGENIC
3L	18250390	3L_18250390_SNP [dm3] 3L_18257290_SNP [dm6]	A	G	4.950e^-4	0.975	INTERGENIC
2R	6737442	2R_6737442_SNP [dm3] 2R_10849937_SNP [dm6]	A	G	4.956e^-4	0.975	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3463602	X_3463602_SNP [dm3] X_3569569_SNP [dm6]	A	G	4.957e^-4	0.975	SYNONYMOUS_CODING ppk8 INTRON ppk8 & 1 other
2L	5743697	2L_5743697_SNP [dm3] 2L_5743697_SNP [dm6]	C	A	4.966e^-4	0.975	INTRON CG11030
2R	16192884	2R_16192884_SNP [dm3] 2R_20305379_SNP [dm6]	C	T	4.969e^-4	0.975	SYNONYMOUS_CODING CG11200
3L	17023728	3L_17023728_SNP [dm3] 3L_17030628_SNP [dm6]	T	A	4.971e^-4	0.975	DOWNSTREAM CG7730 INTRON Ilp8
3L	17023748	3L_17023748_SNP [dm3] 3L_17030648_SNP [dm6]	C	A	4.971e^-4	0.975	DOWNSTREAM CG7730 INTRON Ilp8
2L	11485870	2L_11485870_SNP [dm3] 2L_11485870_SNP [dm6]	A	T	4.972e^-4	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13040054	X_13040054_SNP [dm3] X_13146021_SNP [dm6]	T	A	4.982e^-4	0.975	INTRON CG32645
2R	19704491	2R_19704491_SNP [dm3] 2R_23816968_SNP [dm6]	C	T	4.994e^-4	0.975	INTRON CG4797
2R	6737697	2R_6737697_INS [dm3] 2R_10850192_INS [dm6]	A	AGGG	4.997e^-4	0.975	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	3522204	X_3522204_INS [dm3] X_3628171_INS [dm6]	C	CC	5.010e^-4	0.975	INTRON AstA-R1
2L	19458354	2L_19458354_SNP [dm3] 2L_19458354_SNP [dm6]	T	C	5.010e^-4	0.975	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	19458361	2L_19458361_SNP [dm3] 2L_19458361_SNP [dm6]	G	T	5.010e^-4	0.975	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	19458372	2L_19458372_SNP [dm3] 2L_19458372_SNP [dm6]	A	T	5.010e^-4	0.975	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	5202141	3L_5202141_DEL [dm3] 3L_5209041_DEL [dm6]	CA	C	5.013e^-4	0.975	INTRON shep
2R	17358264	2R_17358264_INS [dm3] 2R_21470759_INS [dm6]	T	TT	5.022e^-4	0.975	INTRON Sdc
2R	3955161	2R_3955161_SNP [dm3] 2R_8067656_SNP [dm6]	T	C	5.036e^-4	0.975	UPSTREAM lig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11940630	2L_11940630_SNP [dm3] 2L_11940630_SNP [dm6]	C	T	5.042e^-4	0.975	INTERGENIC
2L	11940635	2L_11940635_SNP [dm3] 2L_11940635_SNP [dm6]	A	G	5.042e^-4	0.975	INTERGENIC
X	8093762	X_8093762_INS [dm3] X_8199729_INS [dm6]	C	CTTGAC	5.049e^-4	0.975	INTRON sdt
2R	1382355	2R_1382355_DEL [dm3] 2R_5494850_DEL [dm6]	TTAT	T	5.056e^-4	0.975	CODON_DELETION CG30440
3L	12438731	3L_12438731_SNP [dm3] 3L_12445631_SNP [dm6]	T	G	5.058e^-4	0.975	INTERGENIC
3R	6112695	3R_6112695_SNP [dm3] 3R_10286973_SNP [dm6]	G	T	5.072e^-4	0.975	INTRON CG43143
X	14286362	X_14286362_SNP [dm3] X_14392329_SNP [dm6]	T	G	5.083e^-4	0.975	INTRON dpr8
3L	2787642	3L_2787642_SNP [dm3] 3L_2787642_SNP [dm6]	A	T	5.095e^-4	0.975	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2520654	3R_2520654_SNP [dm3] 3R_6694932_SNP [dm6]	C	A	5.097e^-4	0.975	DOWNSTREAM Ccp84Ac INTERGENIC
2R	8534563	2R_8534563_SNP [dm3] 2R_12647058_SNP [dm6]	G	C	5.101e^-4	0.975	INTRON CG8785
2R	4631641	2R_4631641_SNP [dm3] 2R_8744136_SNP [dm6]	C	T	5.111e^-4	0.975	INTRON CG8740 EXON CR44277
3R	26077470	3R_26077470_SNP [dm3] 3R_30251748_SNP [dm6]	T	C	5.118e^-4	0.975	INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	2975522	3L_2975522_SNP [dm3] 3L_2975522_SNP [dm6]	C	A	5.133e^-4	0.975	EXON CR44530
3L	2975524	3L_2975524_SNP [dm3] 3L_2975524_SNP [dm6]	G	A	5.133e^-4	0.975	EXON CR44530
3R	960831	3R_960831_SNP [dm3] 3R_5135109_SNP [dm6]	C	G	5.175e^-4	0.975	INTERGENIC
3R	960832	3R_960832_SNP [dm3] 3R_5135110_SNP [dm6]	G	C	5.175e^-4	0.975	INTERGENIC
3L	10936777	3L_10936777_DEL [dm3] 3L_10943677_DEL [dm6]	CTG	C	5.180e^-4	0.975	UPSTREAM CG34050 INTERGENIC
2L	8755446	2L_8755446_SNP [dm3] 2L_8755446_SNP [dm6]	C	A	5.182e^-4	0.975	INTERGENIC
2L	5726897	2L_5726897_SNP [dm3] 2L_5726897_SNP [dm6]	A	T	5.191e^-4	0.975	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo
2R	17909874	2R_17909874_SNP [dm3] 2R_22022369_SNP [dm6]	A	G	5.201e^-4	0.975	INTRON CG34370
3L	11195249	3L_11195249_SNP [dm3] 3L_11202149_SNP [dm6]	G	C	5.212e^-4	0.975	UTR_3_PRIME CG14141 INTRON Plod
3L	10432767	3L_10432767_INS [dm3] 3L_10439667_INS [dm6]	A	AA	5.220e^-4	0.975	INTERGENIC
3L	1279081	3L_1279081_SNP [dm3] 3L_1279081_SNP [dm6]	T	C	5.231e^-4	0.975	INTRON CG32333
2R	12852964	2R_12852964_SNP [dm3] 2R_16965459_SNP [dm6]	T	G	5.233e^-4	0.975	DOWNSTREAM CR44376 INTERGENIC
2L	11518274	2L_11518274_SNP [dm3] 2L_11518274_SNP [dm6]	A	G	5.242e^-4	0.975	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
3L	2912148	3L_2912148_SNP [dm3] 3L_2912148_SNP [dm6]	C	G	5.254e^-4	0.975	INTRON Shab
3R	12384608	3R_12384608_SNP [dm3] 3R_16558886_SNP [dm6]	C	A	5.259e^-4	0.975	INTRON CG42342
2L	2323474	2L_2323474_SNP [dm3] 2L_2323474_SNP [dm6]	G	C	5.289e^-4	0.975	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3L	15896819	3L_15896819_SNP [dm3] 3L_15903719_SNP [dm6]	T	C	5.294e^-4	0.975	INTRON sff
2R	15911894	2R_15911894_SNP [dm3] 2R_20024389_SNP [dm6]	T	A	5.295e^-4	0.975	INTERGENIC
2R	15911935	2R_15911935_SNP [dm3] 2R_20024430_SNP [dm6]	C	T	5.295e^-4	0.975	INTERGENIC
2R	15911950	2R_15911950_SNP [dm3] 2R_20024445_SNP [dm6]	A	T	5.295e^-4	0.975	INTERGENIC
3L	13873953	3L_13873953_SNP [dm3] 3L_13880853_SNP [dm6]	C	A	5.303e^-4	0.975	UPSTREAM CG13737 INTRON dysc & 1 other
3R	12539359	3R_12539359_SNP [dm3] 3R_16713637_SNP [dm6]	C	T	5.309e^-4	0.975	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	5.320e^-4	0.975	INTERGENIC
3L	13548048	3L_13548048_SNP [dm3] 3L_13554948_SNP [dm6]	T	A	5.326e^-4	0.975	INTRON bru-3
2L	10296411	2L_10296411_SNP [dm3] 2L_10296411_SNP [dm6]	G	T	5.343e^-4	0.975	INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13731528	2R_13731528_SNP [dm3] 2R_17844023_SNP [dm6]	A	G	5.346e^-4	0.975	INTRON olf186-F	TF binding site mE1_TFBS_HSA
3R	1864150	3R_1864150_SNP [dm3] 3R_6038428_SNP [dm6]	C	A	5.350e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1426181	2R_1426181_SNP [dm3] 2R_5538676_SNP [dm6]	A	C	5.353e^-4	0.975	INTRON CG30438
X	3141313	X_3141313_SNP [dm3] X_3247280_SNP [dm6]	G	T	5.357e^-4	0.975	INTRON dnc
2L	11477861	2L_11477861_SNP [dm3] 2L_11477861_SNP [dm6]	T	C	5.363e^-4	0.975	INTERGENIC
2R	13001467	2R_13001467_SNP [dm3] 2R_17113962_SNP [dm6]	G	T	5.363e^-4	0.975	SYNONYMOUS_CODING CG15611	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1724726	2R_1724726_SNP [dm3] 2R_5837221_SNP [dm6]	A	G	5.363e^-4	0.975	INTRON dpr12
3R	22131897	3R_22131897_SNP [dm3] 3R_26306175_SNP [dm6]	G	T	5.368e^-4	0.975	INTERGENIC
3R	15098151	3R_15098151_SNP [dm3] 3R_19272429_SNP [dm6]	T	A	5.372e^-4	0.975	INTERGENIC
3L	11667156	3L_11667156_SNP [dm3] 3L_11674056_SNP [dm6]	A	G	5.374e^-4	0.975	INTRON CG32085
2R	3858347	2R_3858347_SNP [dm3] 2R_7970842_SNP [dm6]	C	A	5.379e^-4	0.975	SYNONYMOUS_CODING CG8726
3L	17100222	3L_17100222_SNP [dm3] 3L_17107122_SNP [dm6]	T	C	5.384e^-4	0.975	INTRON Rbp6
2L	5736303	2L_5736303_SNP [dm3] 2L_5736303_SNP [dm6]	C	T	5.388e^-4	0.975	INTRON CG11030 & 1 other	TF binding site mE1_TFBS_HSA
2L	5739825	2L_5739825_SNP [dm3] 2L_5739825_SNP [dm6]	T	A	5.388e^-4	0.975	INTRON CG11030 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3785231	X_3785231_DEL [dm3] X_3891198_DEL [dm6]	TCGCCCTTGGTCCTCTGGGC...	T	5.388e^-4	0.975	DOWNSTREAM CG15239 & 1 other INTERGENIC
2L	9400663	2L_9400663_SNP [dm3] 2L_9400663_SNP [dm6]	C	T	5.396e^-4	0.975	INTRON Shawl
2R	1755731	2R_1755731_INS [dm3] 2R_5868226_INS [dm6]	T	TT	5.405e^-4	0.975	INTERGENIC
X	6285312	X_6285312_SNP [dm3] X_6391279_SNP [dm6]	C	A	5.412e^-4	0.975	INTERGENIC
3R	2344888	3R_2344888_DEL [dm3] 3R_6519166_DEL [dm6]	CAATAAACAATCAAATAAAA...	C	5.415e^-4	0.975	INTERGENIC
3R	2378274	3R_2378274_SNP [dm3] 3R_6552552_SNP [dm6]	G	A	5.415e^-4	0.975	INTRON dpr11
3L	5985151	3L_5985151_SNP [dm3] 3L_5992051_SNP [dm6]	G	C	5.416e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	1426613	2R_1426613_SNP [dm3] 2R_5539108_SNP [dm6]	A	T	5.420e^-4	0.975	INTRON CG30438
2R	15122495	2R_15122495_SNP [dm3] 2R_19234990_SNP [dm6]	C	T	5.438e^-4	0.975	INTRON cora
3R	23312617	3R_23312617_SNP [dm3] 3R_27486895_SNP [dm6]	T	G	5.452e^-4	0.975	INTERGENIC
3R	23312623	3R_23312623_DEL [dm3] 3R_27486901_DEL [dm6]	TG	T	5.452e^-4	0.975	INTERGENIC
3R	23312626	3R_23312626_DEL [dm3] 3R_27486904_DEL [dm6]	AAATCGTTTTG...	A	5.452e^-4	0.975	INTERGENIC
3R	23312641	3R_23312641_SNP [dm3] 3R_27486919_SNP [dm6]	T	C	5.452e^-4	0.975	INTERGENIC
3R	23312643	3R_23312643_DEL [dm3] 3R_27486921_DEL [dm6]	TTTGGTAAG	T	5.452e^-4	0.975	UPSTREAM Gr98a INTERGENIC
3R	23312662	3R_23312662_DEL [dm3] 3R_27486940_DEL [dm6]	TC	T	5.452e^-4	0.975	UPSTREAM Gr98a INTERGENIC
2R	1044582	2R_1044582_SNP [dm3] 2R_5157077_SNP [dm6]	A	T	5.453e^-4	0.975	INTERGENIC	transposable element FlyBase
3L	15479166	3L_15479166_SNP [dm3] 3L_15486066_SNP [dm6]	C	A	5.461e^-4	0.975	UPSTREAM Ran-like INTERGENIC
2R	6741939	2R_6741939_SNP [dm3] 2R_10854434_SNP [dm6]	A	T	5.468e^-4	0.975	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2L	515323	2L_515323_SNP [dm3] 2L_515323_SNP [dm6]	C	T	5.488e^-4	0.975	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18143306	3L_18143306_SNP [dm3] 3L_18150206_SNP [dm6]	G	C	5.497e^-4	0.975	INTRON CG7330
3L	5976776	3L_5976776_SNP [dm3] 3L_5983676_SNP [dm6]	A	G	5.497e^-4	0.975	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	5.558e^-4	0.975	INTRON CR32773
3L	10212896	3L_10212896_SNP [dm3] 3L_10219796_SNP [dm6]	T	A	5.567e^-4	0.975	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2R	3594312	2R_3594312_SNP [dm3] 2R_7706807_SNP [dm6]	A	G	5.568e^-4	0.975	SYNONYMOUS_CODING tor
3L	12009459	3L_12009459_SNP [dm3] 3L_12016359_SNP [dm6]	C	T	5.585e^-4	0.975	INTRON rols	TF binding site BDTNP1_TFBS_da
2L	7105559	2L_7105559_DEL [dm3] 2L_7105559_DEL [dm6]	AT	A	5.597e^-4	0.975	INTRON Pvf3
2R	13384365	2R_13384365_SNP [dm3] 2R_17496860_SNP [dm6]	C	T	5.603e^-4	0.975	DOWNSTREAM CG30103 INTERGENIC
2L	4194553	2L_4194553_SNP [dm3] 2L_4194553_SNP [dm6]	C	A	5.603e^-4	0.975	INTRON CG3714
2L	17579680	2L_17579680_SNP [dm3] 2L_17579680_SNP [dm6]	A	G	5.604e^-4	0.975	EXON CR45698
2R	6435267	2R_6435267_INS [dm3] 2R_10547762_INS [dm6]	G	GTT	5.616e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11485913	2L_11485913_SNP [dm3] 2L_11485913_SNP [dm6]	T	G	5.628e^-4	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485915	2L_11485915_SNP [dm3] 2L_11485915_SNP [dm6]	C	A	5.628e^-4	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17652537	2R_17652537_SNP [dm3] 2R_21765032_SNP [dm6]	A	C	5.632e^-4	0.975	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3R	19895991	3R_19895991_SNP [dm3] 3R_24070269_SNP [dm6]	T	C	5.639e^-4	0.975	INTRON 4EHP
X	17725864	X_17725864_SNP [dm3] X_17831831_SNP [dm6]	T	C	5.645e^-4	0.975	UPSTREAM CR44691 INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8048158	2L_8048158_SNP [dm3] 2L_8048158_SNP [dm6]	C	T	5.657e^-4	0.975	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	4749821	2R_4749821_SNP [dm3] 2R_8862316_SNP [dm6]	T	C	5.666e^-4	0.975	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2475785	X_2475785_SNP [dm3] X_2581752_SNP [dm6]	A	G	5.670e^-4	0.975	UPSTREAM CG13759 INTRON CG13759
3R	15168032	3R_15168032_SNP [dm3] 3R_19342310_SNP [dm6]	C	G	5.675e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7217579	3R_7217579_SNP [dm3] 3R_11391857_SNP [dm6]	C	A	5.675e^-4	0.975	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12686545	2R_12686545_SNP [dm3] 2R_16799040_SNP [dm6]	G	T	5.710e^-4	0.975	INTERGENIC
2L	21051333	2L_21051333_SNP [dm3] 2L_21051333_SNP [dm6]	C	T	5.722e^-4	0.975	START_GAINED CG42238 UTR_5_PRIME CG42238 INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	3955020	2R_3955020_SNP [dm3] 2R_8067515_SNP [dm6]	C	T	5.731e^-4	0.975	UTR_5_PRIME CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3956137	2R_3956137_SNP [dm3] 2R_8068632_SNP [dm6]	C	G	5.731e^-4	0.975	UPSTREAM CG17977 & 1 other INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3956194	2R_3956194_SNP [dm3] 2R_8068689_SNP [dm6]	T	C	5.731e^-4	0.975	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3958119	2R_3958119_SNP [dm3] 2R_8070614_SNP [dm6]	A	T	5.731e^-4	0.975	INTRON lig
X	14787082	X_14787082_SNP [dm3] X_14893049_SNP [dm6]	G	T	5.742e^-4	0.975	INTRON Flo2 & 1 other
2R	6435226	2R_6435226_SNP [dm3] 2R_10547721_SNP [dm6]	G	A	5.770e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11481756	3L_11481756_SNP [dm3] 3L_11488656_SNP [dm6]	G	A	5.785e^-4	0.975	INTRON chrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	2425273	2L_2425273_SNP [dm3] 2L_2425273_SNP [dm6]	G	T	5.789e^-4	0.975	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	528770	2L_528770_SNP [dm3] 2L_528770_SNP [dm6]	T	C	5.789e^-4	0.975	INTRON ush	regulatory region REDfly_CRMs
2R	15912639	2R_15912639_SNP [dm3] 2R_20025134_SNP [dm6]	A	G	5.808e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2711106	3L_2711106_SNP [dm3] 3L_2711106_SNP [dm6]	G	A	5.813e^-4	0.975	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15965527	3R_15965527_SNP [dm3] 3R_20139805_SNP [dm6]	A	G	5.825e^-4	0.975	INTRON CR42836 EXON CR42836
3R	7222072	3R_7222072_DEL [dm3] 3R_11396350_DEL [dm6]	AGAAAATTACCCCAAAA...	A	5.856e^-4	0.975	UTR_3_PRIME pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15828018	2R_15828018_SNP [dm3] 2R_19940513_SNP [dm6]	T	A	5.872e^-4	0.975	EXON CR43421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	6435210	2R_6435210_SNP [dm3] 2R_10547705_SNP [dm6]	A	G	5.873e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16897460	3L_16897460_SNP [dm3] 3L_16904360_SNP [dm6]	A	G	5.884e^-4	0.975	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	20540117	X_20540117_SNP [dm3] X_20669090_SNP [dm6]	T	C	5.892e^-4	0.975	INTRON CG1835
2L	2797207	2L_2797207_INS [dm3] 2L_2797207_INS [dm6]	T	TAGTG	5.893e^-4	0.975	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_Trl
3L	5159681	3L_5159681_SNP [dm3] 3L_5166581_SNP [dm6]	C	A	5.900e^-4	0.975	INTRON shep
3L	2996074	3L_2996074_DEL [dm3] 3L_2996074_DEL [dm6]	TT	T	5.907e^-4	0.975	UTR_3_PRIME CG2113
3L	2870205	3L_2870205_SNP [dm3] 3L_2870205_SNP [dm6]	T	C	5.911e^-4	0.975	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13818798	2R_13818798_SNP [dm3] 2R_17931293_SNP [dm6]	C	T	5.944e^-4	0.975	INTERGENIC
3L	3037221	3L_3037221_SNP [dm3] 3L_3037221_SNP [dm6]	A	G	5.968e^-4	0.975	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3037222	3L_3037222_SNP [dm3] 3L_3037222_SNP [dm6]	A	G	5.968e^-4	0.975	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3037232	3L_3037232_SNP [dm3] 3L_3037232_SNP [dm6]	G	A	5.968e^-4	0.975	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3043865	3L_3043865_SNP [dm3] 3L_3043865_SNP [dm6]	T	A	5.968e^-4	0.975	DOWNSTREAM scramb2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	14572553	2R_14572553_SNP [dm3] 2R_18685048_SNP [dm6]	C	A	5.982e^-4	0.975	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18697026	3R_18697026_SNP [dm3] 3R_22871304_SNP [dm6]	G	A	6.024e^-4	0.975	INTERGENIC
2L	5518426	2L_5518426_SNP [dm3] 2L_5518426_SNP [dm6]	C	G	6.028e^-4	0.975	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	6197011	2L_6197011_SNP [dm3] 2L_6197011_SNP [dm6]	G	A	6.030e^-4	0.975	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17324232	X_17324232_SNP [dm3] X_17430199_SNP [dm6]	T	A	6.037e^-4	0.975	INTRON CG12994
3R	15071948	3R_15071948_SNP [dm3] 3R_19246226_SNP [dm6]	T	G	6.076e^-4	0.975	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15912765	2R_15912765_SNP [dm3] 2R_20025260_SNP [dm6]	A	G	6.081e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5166898	3L_5166898_DEL [dm3] 3L_5173798_DEL [dm6]	AT	C	6.087e^-4	0.975	INTRON shep
2R	6275451	2R_6275451_SNP [dm3] 2R_10387946_SNP [dm6]	A	T	6.087e^-4	0.975	INTRON CG42732
2R	13594938	2R_13594938_SNP [dm3] 2R_17707433_SNP [dm6]	C	G	6.107e^-4	0.975	NON_SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	2428465	3R_2428465_SNP [dm3] 3R_6602743_SNP [dm6]	T	A	6.124e^-4	0.975	DOWNSTREAM CG31482 INTERGENIC	transposable element FlyBase
2R	18366427	2R_18366427_DEL [dm3] 2R_22478922_DEL [dm6]	ATCTACA	C	6.125e^-4	0.975	SPLICE_SITE_REGION CG4752 INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22760723	3L_22760723_SNP [dm3] 3L_22767623_SNP [dm6]	G	C	6.134e^-4	0.975	INTRON SPoCk
2L	21863961	2L_21863961_DEL [dm3] 2L_21863961_DEL [dm6]	AA	A	6.140e^-4	0.975	DOWNSTREAM CR44918 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2449286	3R_2449286_SNP [dm3] 3R_6623564_SNP [dm6]	G	A	6.145e^-4	0.975	INTERGENIC
3L	1145319	3L_1145319_SNP [dm3] 3L_1145319_SNP [dm6]	T	C	6.151e^-4	0.975	INTRON bab2
X	1534138	X_1534138_SNP [dm3] X_1640105_SNP [dm6]	T	A	6.156e^-4	0.975	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	6.158e^-4	0.975	INTERGENIC
2L	8367765	2L_8367765_SNP [dm3] 2L_8367765_SNP [dm6]	C	T	6.160e^-4	0.975	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2R	14714371	2R_14714371_SNP [dm3] 2R_18826866_SNP [dm6]	T	C	6.165e^-4	0.975	INTRON CG15097
3L	18142796	3L_18142796_SNP [dm3] 3L_18149696_SNP [dm6]	G	A	6.177e^-4	0.975	INTRON CG7330
X	10239696	X_10239696_DEL [dm3] X_10345663_DEL [dm6]	TTTCGC	T	6.179e^-4	0.975	INTRON CG43740	TF binding site BDTNP1_TFBS_dl
3L	3517725	3L_3517725_SNP [dm3] 3L_3517725_SNP [dm6]	G	A	6.190e^-4	0.975	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
3R	26810770	3R_26810770_SNP [dm3] 3R_30985048_SNP [dm6]	C	A	6.191e^-4	0.975	INTRON 5-HT7
2L	9354250	2L_9354250_SNP [dm3] 2L_9354250_SNP [dm6]	A	G	6.203e^-4	0.975	INTERGENIC
2L	9354267	2L_9354267_SNP [dm3] 2L_9354267_SNP [dm6]	A	G	6.203e^-4	0.975	INTERGENIC
3L	1131203	3L_1131203_SNP [dm3] 3L_1131203_SNP [dm6]	A	C	6.229e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
2R	15938723	2R_15938723_INS [dm3] 2R_20051218_INS [dm6]	T	TA	6.237e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19883122	2R_19883122_SNP [dm3] 2R_23995599_SNP [dm6]	T	C	6.241e^-4	0.975	UTR_3_PRIME Unc-89 UPSTREAM CG3860	TF binding site mE1_TFBS_cad
2R	17405523	2R_17405523_SNP [dm3] 2R_21518018_SNP [dm6]	A	G	6.251e^-4	0.975	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
3L	11191321	3L_11191321_SNP [dm3] 3L_11198221_SNP [dm6]	A	C	6.252e^-4	0.975	UTR_3_PRIME Plod UPSTREAM GlcAT-P
2L	15116468	2L_15116468_SNP [dm3] 2L_15116468_SNP [dm6]	A	G	6.256e^-4	0.975	SYNONYMOUS_CODING stc	TF binding site mE1_TFBS_chinmo
3R	15090727	3R_15090727_SNP [dm3] 3R_19265005_SNP [dm6]	G	T	6.263e^-4	0.975	INTERGENIC
3R	15090745	3R_15090745_SNP [dm3] 3R_19265023_SNP [dm6]	C	T	6.263e^-4	0.975	INTERGENIC
3R	15090771	3R_15090771_SNP [dm3] 3R_19265049_SNP [dm6]	G	T	6.263e^-4	0.975	INTERGENIC
3R	15090786	3R_15090786_SNP [dm3] 3R_19265064_SNP [dm6]	G	A	6.263e^-4	0.975	INTERGENIC
2L	7872977	2L_7872977_SNP [dm3] 2L_7872977_SNP [dm6]	G	T	6.265e^-4	0.975	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2R	7051296	2R_7051296_INS [dm3] 2R_11163791_INS [dm6]	A	AA	6.266e^-4	0.975	INTRON shn & 1 other
2L	13896798	2L_13896798_SNP [dm3] 2L_13896798_SNP [dm6]	C	T	6.273e^-4	0.975	SPLICE_SITE_REGION CenG1A INTRON CenG1A	TF binding site mE1_TFBS_cad
2R	1037767	2R_1037767_SNP [dm3] 2R_5150262_SNP [dm6]	T	C	6.276e^-4	0.975	INTRON Atf6
2L	5757180	2L_5757180_DEL [dm3] 2L_5757180_DEL [dm6]	TGT	C	6.282e^-4	0.975	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6555821	2R_6555821_SNP [dm3] 2R_10668316_SNP [dm6]	G	A	6.282e^-4	0.975	INTERGENIC
3L	11516989	3L_11516989_SNP [dm3] 3L_11523889_SNP [dm6]	T	G	6.282e^-4	0.975	UTR_3_PRIME Mob2 DOWNSTREAM Mob2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
3L	11518661	3L_11518661_SNP [dm3] 3L_11525561_SNP [dm6]	T	G	6.282e^-4	0.975	INTRON Mob2	TF binding site mE1_TFBS_cad
3L	12011861	3L_12011861_SNP [dm3] 3L_12018761_SNP [dm6]	T	G	6.282e^-4	0.975	INTRON rols
3L	12011936	3L_12011936_SNP [dm3] 3L_12018836_SNP [dm6]	C	T	6.282e^-4	0.975	INTRON rols
3L	12437452	3L_12437452_SNP [dm3] 3L_12444352_SNP [dm6]	C	T	6.282e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	6.282e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15609542	3L_15609542_SNP [dm3] 3L_15616442_SNP [dm6]	T	A	6.282e^-4	0.975	INTRON comm3
3R	26077464	3R_26077464_SNP [dm3] 3R_30251742_SNP [dm6]	T	A	6.282e^-4	0.975	INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	26077509	3R_26077509_SNP [dm3] 3R_30251787_SNP [dm6]	A	G	6.282e^-4	0.975	NON_SYNONYMOUS_CODING CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	1316369	3L_1316369_SNP [dm3] 3L_1316369_SNP [dm6]	T	C	6.284e^-4	0.975	INTRON CG9153
3L	1318900	3L_1318900_SNP [dm3] 3L_1318900_SNP [dm6]	C	T	6.284e^-4	0.975	DOWNSTREAM CG9153 INTRON Myo61F
3L	1318905	3L_1318905_SNP [dm3] 3L_1318905_SNP [dm6]	T	C	6.284e^-4	0.975	DOWNSTREAM CG9153 INTRON Myo61F
X	475801	X_475801_SNP [dm3] X_581768_SNP [dm6]	G	A	6.284e^-4	0.975	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24553947	3R_24553947_SNP [dm3] 3R_28728225_SNP [dm6]	C	T	6.297e^-4	0.975	INTRON htt
X	16427613	X_16427613_SNP [dm3] X_16533580_SNP [dm6]	A	G	6.309e^-4	0.975	UPSTREAM para INTERGENIC
3R	24121253	3R_24121253_SNP [dm3] 3R_28295531_SNP [dm6]	A	G	6.311e^-4	0.975	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8546704	2R_8546704_SNP [dm3] 2R_12659199_SNP [dm6]	A	G	6.315e^-4	0.975	SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
X	3762399	X_3762399_SNP [dm3] X_3868366_SNP [dm6]	T	G	6.351e^-4	0.975	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12069501	3L_12069501_SNP [dm3] 3L_12076401_SNP [dm6]	A	T	6.359e^-4	0.975	INTRON Sema-5c
3R	23312659	3R_23312659_SNP [dm3] 3R_27486937_SNP [dm6]	G	T	6.365e^-4	0.975	UPSTREAM Gr98a INTERGENIC
2R	13544963	2R_13544963_SNP [dm3] 2R_17657458_SNP [dm6]	C	T	6.374e^-4	0.975	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8854776	3L_8854776_SNP [dm3] 3L_8861676_SNP [dm6]	A	G	6.385e^-4	0.975	INTRON dally
3R	14686201	3R_14686201_SNP [dm3] 3R_18860479_SNP [dm6]	G	A	6.388e^-4	0.975	INTERGENIC
X	19618183	X_19618183_SNP [dm3] X_19724150_SNP [dm6]	T	A	6.400e^-4	0.975	INTRON CG12531
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	6.401e^-4	0.975	INTERGENIC
2R	1427271	2R_1427271_DEL [dm3] 2R_5539766_DEL [dm6]	GTG	AA	6.406e^-4	0.975	INTRON CG30438
2R	4727109	2R_4727109_SNP [dm3] 2R_8839604_SNP [dm6]	A	T	6.445e^-4	0.975	INTRON sns
2L	11485831	2L_11485831_SNP [dm3] 2L_11485831_SNP [dm6]	A	G	6.479e^-4	0.975	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14787047	X_14787047_SNP [dm3] X_14893014_SNP [dm6]	A	T	6.481e^-4	0.975	INTRON Flo2 & 1 other
3L	12734760	3L_12734760_DEL [dm3] 3L_12741660_DEL [dm6]	TT	T	6.500e^-4	0.975	UPSTREAM CG32112 DOWNSTREAM Ptp69D INTERGENIC
3L	22749097	3L_22749097_SNP [dm3] 3L_22755997_SNP [dm6]	T	A	6.509e^-4	0.975	INTRON SPoCk
3L	2286186	3L_2286186_SNP [dm3] 3L_2286186_SNP [dm6]	G	A	6.510e^-4	0.975	INTRON MsR2
2R	15844091	2R_15844091_SNP [dm3] 2R_19956586_SNP [dm6]	T	A	6.528e^-4	0.975	SPLICE_SITE_REGION CG44623 INTRON CG44623
2R	15844103	2R_15844103_SNP [dm3] 2R_19956598_SNP [dm6]	T	C	6.528e^-4	0.975	SYNONYMOUS_CODING CG44623
2R	1092472	2R_1092472_DEL [dm3] 2R_5204967_DEL [dm6]	AGAAGA	A	6.562e^-4	0.975	INTRON Nipped-A	TF binding site mE1_TFBS_sens
2L	21851936	2L_21851936_SNP [dm3] 2L_21851936_SNP [dm6]	A	G	6.563e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16168228	2R_16168228_SNP [dm3] 2R_20280723_SNP [dm6]	A	T	6.586e^-4	0.975	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	16168304	2R_16168304_SNP [dm3] 2R_20280799_SNP [dm6]	T	C	6.586e^-4	0.975	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	12225273	2R_12225273_SNP [dm3] 2R_16337768_SNP [dm6]	A	G	6.594e^-4	0.975	UPSTREAM Hmgs INTRON Hmgs
2R	15911901	2R_15911901_INS [dm3] 2R_20024396_INS [dm6]	T	TGT	6.613e^-4	0.975	INTERGENIC
2R	15911913	2R_15911913_SNP [dm3] 2R_20024408_SNP [dm6]	A	T	6.613e^-4	0.975	INTERGENIC
2R	15911921	2R_15911921_SNP [dm3] 2R_20024416_SNP [dm6]	T	G	6.613e^-4	0.975	INTERGENIC
2R	17368981	2R_17368981_SNP [dm3] 2R_21481476_SNP [dm6]	A	T	6.638e^-4	0.975	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17368995	2R_17368995_SNP [dm3] 2R_21481490_SNP [dm6]	G	T	6.638e^-4	0.975	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13856161	3L_13856161_SNP [dm3] 3L_13863061_SNP [dm6]	C	A	6.646e^-4	0.975	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21826791	2L_21826791_SNP [dm3] 2L_21826791_SNP [dm6]	C	A	6.650e^-4	0.975	INTERGENIC	transposable element FlyBase
2R	3906767	2R_3906767_SNP [dm3] 2R_8019262_SNP [dm6]	T	G	6.651e^-4	0.975	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16873818	X_16873818_SNP [dm3] X_16979785_SNP [dm6]	C	T	6.664e^-4	0.975	INTRON CG45002
3R	11596873	3R_11596873_SNP [dm3] 3R_15771151_SNP [dm6]	T	A	6.672e^-4	0.975	INTERGENIC	transposable element FlyBase
2L	8196912	2L_8196912_SNP [dm3] 2L_8196912_SNP [dm6]	T	A	6.678e^-4	0.975	UTR_5_PRIME CG8475 UPSTREAM CG8460 EXON CR44116
2L	19565554	2L_19565554_SNP [dm3] 2L_19565554_SNP [dm6]	C	A	6.691e^-4	0.975	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2R	6152146	2R_6152146_INS [dm3] 2R_10264641_INS [dm6]	T	AAATATATACATACA...	6.711e^-4	0.975	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16331780	X_16331780_SNP [dm3] X_16437747_SNP [dm6]	C	T	6.718e^-4	0.975	UTR_3_PRIME hang & 1 other
3R	21484674	3R_21484674_SNP [dm3] 3R_25658952_SNP [dm6]	A	C	6.728e^-4	0.975	INTRON Tnks	TF binding site mE1_TFBS_inv
3L	4970164	3L_4970164_SNP [dm3] 3L_4970164_SNP [dm6]	C	T	6.739e^-4	0.975	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9867385	2R_9867385_SNP [dm3] 2R_13979880_SNP [dm6]	A	G	6.740e^-4	0.975	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11637759	2L_11637759_SNP [dm3] 2L_11637759_SNP [dm6]	A	T	6.752e^-4	0.975	INTERGENIC
2L	12402933	2L_12402933_SNP [dm3] 2L_12402933_SNP [dm6]	G	C	6.752e^-4	0.975	DOWNSTREAM Pkd2 & 1 other INTERGENIC
3R	6864623	3R_6864623_SNP [dm3] 3R_11038901_SNP [dm6]	G	C	6.766e^-4	0.975	INTRON CG34114	TF binding site mE1_TFBS_inv
X	7067765	X_7067765_SNP [dm3] X_7173732_SNP [dm6]	A	C	6.779e^-4	0.975	INTRON CG9650 & 1 other EXON CR44357
2L	6955128	2L_6955128_SNP [dm3] 2L_6955128_SNP [dm6]	G	T	6.795e^-4	0.975	NON_SYNONYMOUS_CODING CG13775 DOWNSTREAM SA
3L	16413303	3L_16413303_SNP [dm3] 3L_16420203_SNP [dm6]	G	A	6.828e^-4	0.975	NON_SYNONYMOUS_CODING CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	3896885	2R_3896885_SNP [dm3] 2R_8009380_SNP [dm6]	G	A	6.835e^-4	0.975	UTR_3_PRIME CG14762 DOWNSTREAM Odc2
3R	14517800	3R_14517800_SNP [dm3] 3R_18692078_SNP [dm6]	C	T	6.839e^-4	0.975	INTRON Muc91C
3R	14518874	3R_14518874_SNP [dm3] 3R_18693152_SNP [dm6]	A	T	6.839e^-4	0.975	UPSTREAM Muc91C DOWNSTREAM CG14300 INTERGENIC
3L	16731299	3L_16731299_SNP [dm3] 3L_16738199_SNP [dm6]	C	T	6.849e^-4	0.975	INTRON CG9701	TF binding site mE1_TFBS_cad
2L	9662575	2L_9662575_SNP [dm3] 2L_9662575_SNP [dm6]	G	A	6.852e^-4	0.975	INTERGENIC
2L	21756039	2L_21756039_SNP [dm3] 2L_21756039_SNP [dm6]	C	A	6.862e^-4	0.975	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10667213	3R_10667213_SNP [dm3] 3R_14841491_SNP [dm6]	C	G	6.886e^-4	0.975	INTRON btsz
3L	2047570	3L_2047570_SNP [dm3] 3L_2047570_SNP [dm6]	G	T	6.888e^-4	0.975	SYNONYMOUS_CODING sls
X	13040749	X_13040749_SNP [dm3] X_13146716_SNP [dm6]	T	C	6.893e^-4	0.975	INTRON CG32645
X	19194613	X_19194613_INS [dm3] X_19300580_INS [dm6]	T	TT	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194625	X_19194625_SNP [dm3] X_19300592_SNP [dm6]	G	A	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194630	X_19194630_SNP [dm3] X_19300597_SNP [dm6]	C	A	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194640	X_19194640_SNP [dm3] X_19300607_SNP [dm6]	A	G	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194645	X_19194645_SNP [dm3] X_19300612_SNP [dm6]	T	A	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194668	X_19194668_SNP [dm3] X_19300635_SNP [dm6]	T	A	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194681	X_19194681_SNP [dm3] X_19300648_SNP [dm6]	A	G	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	19194724	X_19194724_SNP [dm3] X_19300691_SNP [dm6]	C	T	6.894e^-4	0.975	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
X	11684881	X_11684881_SNP [dm3] X_11790848_SNP [dm6]	T	A	6.922e^-4	0.975	INTRON Karl EXON CR44962
3L	13365475	3L_13365475_SNP [dm3] 3L_13372375_SNP [dm6]	C	T	6.924e^-4	0.975	INTERGENIC
3L	13365482	3L_13365482_SNP [dm3] 3L_13372382_SNP [dm6]	T	C	6.924e^-4	0.975	INTERGENIC
3R	16986212	3R_16986212_SNP [dm3] 3R_21160490_SNP [dm6]	G	T	6.924e^-4	0.975	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
2R	6740302	2R_6740302_DEL [dm3] 2R_10852797_DEL [dm6]	AG	A	6.940e^-4	0.975	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	13134131	3L_13134131_SNP [dm3] 3L_13141031_SNP [dm6]	T	C	6.943e^-4	0.975	INTERGENIC
2L	19246858	2L_19246858_DEL [dm3] 2L_19246858_DEL [dm6]	GG	G	6.954e^-4	0.975	INTERGENIC
2L	19246871	2L_19246871_SNP [dm3] 2L_19246871_SNP [dm6]	T	C	6.954e^-4	0.975	INTERGENIC
3L	18142809	3L_18142809_SNP [dm3] 3L_18149709_SNP [dm6]	A	G	6.967e^-4	0.975	INTRON CG7330
3R	11771757	3R_11771757_SNP [dm3] 3R_15946035_SNP [dm6]	C	G	6.975e^-4	0.975	INTRON Sap47
3R	2428458	3R_2428458_SNP [dm3] 3R_6602736_SNP [dm6]	T	A	6.979e^-4	0.975	DOWNSTREAM CG31482 INTERGENIC	transposable element FlyBase
2R	17568019	2R_17568019_SNP [dm3] 2R_21680514_SNP [dm6]	A	G	7.000e^-4	0.975	SPLICE_SITE_REGION CG30263 SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17568024	2R_17568024_SNP [dm3] 2R_21680519_SNP [dm6]	G	A	7.000e^-4	0.975	SPLICE_SITE_REGION CG30263 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13829043	3L_13829043_SNP [dm3] 3L_13835943_SNP [dm6]	C	T	7.011e^-4	0.975	INTERGENIC
3L	21380864	3L_21380864_SNP [dm3] 3L_21387764_SNP [dm6]	C	T	7.017e^-4	0.975	INTRON rgn
2L	9022106	2L_9022106_SNP [dm3] 2L_9022106_SNP [dm6]	G	C	7.020e^-4	0.975	INTERGENIC
3L	13883096	3L_13883096_SNP [dm3] 3L_13889996_SNP [dm6]	C	A	7.022e^-4	0.975	INTRON dysc
2L	18625697	2L_18625697_SNP [dm3] 2L_18625697_SNP [dm6]	A	G	7.041e^-4	0.975	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14153905	3L_14153905_SNP [dm3] 3L_14160805_SNP [dm6]	C	A	7.043e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
2R	10803902	2R_10803902_SNP [dm3] 2R_14916397_SNP [dm6]	T	C	7.060e^-4	0.975	INTRON CG10249
3L	13835565	3L_13835565_SNP [dm3] 3L_13842465_SNP [dm6]	G	C	7.061e^-4	0.975	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13853228	3L_13853228_SNP [dm3] 3L_13860128_SNP [dm6]	C	T	7.061e^-4	0.975	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3L	14310944	3L_14310944_SNP [dm3] 3L_14317844_SNP [dm6]	T	A	7.063e^-4	0.975	INTRON fz
3R	17828468	3R_17828468_INS [dm3] 3R_22002746_INS [dm6]	A	AACA	7.069e^-4	0.975	INTRON Eip93F
3R	17828473	3R_17828473_SNP [dm3] 3R_22002751_SNP [dm6]	A	C	7.069e^-4	0.975	INTRON Eip93F
3R	22281164	3R_22281164_SNP [dm3] 3R_26455442_SNP [dm6]	A	C	7.080e^-4	0.975	DOWNSTREAM Pdf & 2 others INTERGENIC
2R	17358266	2R_17358266_SNP [dm3] 2R_21470761_SNP [dm6]	G	C	7.088e^-4	0.975	INTRON Sdc
2R	6768360	2R_6768360_SNP [dm3] 2R_10880855_SNP [dm6]	C	A	7.117e^-4	0.975	INTRON Pex6	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
2R	10774661	2R_10774661_SNP [dm3] 2R_14887156_SNP [dm6]	C	A	7.124e^-4	0.975	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
2R	12663973	2R_12663973_SNP [dm3] 2R_16776468_SNP [dm6]	T	A	7.133e^-4	0.975	DOWNSTREAM Arp53D INTERGENIC
3R	23195046	3R_23195046_SNP [dm3] 3R_27369324_SNP [dm6]	T	C	7.152e^-4	0.975	SYNONYMOUS_CODING CG42534 EXON CR43476
2L	21756747	2L_21756747_SNP [dm3] 2L_21756747_SNP [dm6]	C	A	7.160e^-4	0.975	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2L	21771062	2L_21771062_DEL [dm3] 2L_21771062_DEL [dm6]	AA	A	7.160e^-4	0.975	INTRON CG31612
2L	21829985	2L_21829985_SNP [dm3] 2L_21829985_SNP [dm6]	T	A	7.160e^-4	0.975	INTRON tsh	TF binding site BDTNP1_TFBS_dl
2L	21830020	2L_21830020_DEL [dm3] 2L_21830020_DEL [dm6]	TCATT	T	7.160e^-4	0.975	INTRON tsh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21844701	2L_21844701_SNP [dm3] 2L_21844701_SNP [dm6]	C	T	7.160e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21851310	2L_21851310_SNP [dm3] 2L_21851310_SNP [dm6]	T	A	7.160e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11177682	3L_11177682_SNP [dm3] 3L_11184582_SNP [dm6]	A	T	7.165e^-4	0.975	INTRON GlcAT-P
3L	2711078	3L_2711078_SNP [dm3] 3L_2711078_SNP [dm6]	G	A	7.175e^-4	0.975	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1318899	3L_1318899_SNP [dm3] 3L_1318899_SNP [dm6]	T	C	7.178e^-4	0.975	DOWNSTREAM CG9153 INTRON Myo61F
2R	13573630	2R_13573630_SNP [dm3] 2R_17686125_SNP [dm6]	A	C	7.186e^-4	0.975	SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2R	8536282	2R_8536282_SNP [dm3] 2R_12648777_SNP [dm6]	T	C	7.191e^-4	0.975	UPSTREAM CG8785 INTERGENIC
3L	3787717	3L_3787717_SNP [dm3] 3L_3787717_SNP [dm6]	A	T	7.207e^-4	0.975	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19675611	2R_19675611_SNP [dm3] 2R_23788088_SNP [dm6]	A	G	7.209e^-4	0.975	INTRON CG9850
X	18460626	X_18460626_SNP [dm3] X_18566593_SNP [dm6]	A	G	7.238e^-4	0.975	NON_SYNONYMOUS_CODING Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1962083	3R_1962083_SNP [dm3] 3R_6136361_SNP [dm6]	A	T	7.240e^-4	0.975	INTERGENIC
3R	5364261	3R_5364261_SNP [dm3] 3R_9538539_SNP [dm6]	G	A	7.252e^-4	0.975	UTR_3_PRIME mura
2L	16473339	2L_16473339_SNP [dm3] 2L_16473339_SNP [dm6]	G	A	7.256e^-4	0.975	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3R	26750680	3R_26750680_SNP [dm3] 3R_30924958_SNP [dm6]	G	A	7.260e^-4	0.975	INTRON Ptx1
X	16331776	X_16331776_DEL [dm3] X_16437743_DEL [dm6]	TT	T	7.276e^-4	0.975	UTR_3_PRIME hang & 1 other
3L	5159672	3L_5159672_SNP [dm3] 3L_5166572_SNP [dm6]	A	G	7.279e^-4	0.975	INTRON shep
3L	12591604	3L_12591604_SNP [dm3] 3L_12598504_SNP [dm6]	G	A	7.286e^-4	0.975	INTERGENIC
X	17865041	X_17865041_SNP [dm3] X_17971008_SNP [dm6]	A	G	7.287e^-4	0.975	INTRON Sh
3R	24762313	3R_24762313_SNP [dm3] 3R_28936591_SNP [dm6]	A	G	7.288e^-4	0.975	INTRON CG14521
3L	18814101	3L_18814101_SNP [dm3] 3L_18821001_SNP [dm6]	A	G	7.292e^-4	0.975	UPSTREAM HipHop & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18814105	3L_18814105_SNP [dm3] 3L_18821005_SNP [dm6]	A	G	7.292e^-4	0.975	UPSTREAM HipHop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11596862	3R_11596862_DEL [dm3] 3R_15771140_DEL [dm6]	CAT	A	7.292e^-4	0.975	INTERGENIC	transposable element FlyBase
3R	11596895	3R_11596895_SNP [dm3] 3R_15771173_SNP [dm6]	C	T	7.292e^-4	0.975	INTERGENIC	transposable element FlyBase
3R	11596924	3R_11596924_SNP [dm3] 3R_15771202_SNP [dm6]	C	G	7.292e^-4	0.975	INTERGENIC	transposable element FlyBase
3R	11596932	3R_11596932_SNP [dm3] 3R_15771210_SNP [dm6]	A	G	7.292e^-4	0.975	INTERGENIC	transposable element FlyBase
3R	11596937	3R_11596937_SNP [dm3] 3R_15771215_SNP [dm6]	C	A	7.292e^-4	0.975	INTERGENIC	transposable element FlyBase
2R	12552676	2R_12552676_SNP [dm3] 2R_16665171_SNP [dm6]	G	C	7.298e^-4	0.975	INTRON Picot
2R	19392614	2R_19392614_SNP [dm3] 2R_23505091_SNP [dm6]	C	A	7.300e^-4	0.975	INTERGENIC
2R	1411747	2R_1411747_DEL [dm3] 2R_5524242_DEL [dm6]	TCGAT	T	7.302e^-4	0.975	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
3L	9765644	3L_9765644_SNP [dm3] 3L_9772544_SNP [dm6]	T	A	7.302e^-4	0.975	INTRON CG8177
3L	18143035	3L_18143035_SNP [dm3] 3L_18149935_SNP [dm6]	C	T	7.302e^-4	0.975	INTRON CG7330
2R	15827415	2R_15827415_SNP [dm3] 2R_19939910_SNP [dm6]	T	C	7.318e^-4	0.975	EXON CR43421	TF binding site BDTNP1_TFBS_prd
2L	19246915	2L_19246915_SNP [dm3] 2L_19246915_SNP [dm6]	G	T	7.318e^-4	0.975	INTERGENIC
2L	19246918	2L_19246918_SNP [dm3] 2L_19246918_SNP [dm6]	A	T	7.318e^-4	0.975	INTERGENIC
2L	17492023	2L_17492023_INS [dm3] 2L_17492023_INS [dm6]	C	CAC	7.323e^-4	0.975	UTR_5_PRIME qua INTRON qua
3L	18143352	3L_18143352_SNP [dm3] 3L_18150252_SNP [dm6]	C	A	7.329e^-4	0.975	INTRON CG7330
2R	1421731	2R_1421731_SNP [dm3] 2R_5534226_SNP [dm6]	T	A	7.351e^-4	0.975	INTRON CG30438	transposable element FlyBase
2R	16965455	2R_16965455_SNP [dm3] 2R_21077950_SNP [dm6]	G	A	7.373e^-4	0.975	INTRON Treh
3L	18245814	3L_18245814_SNP [dm3] 3L_18252714_SNP [dm6]	C	T	7.374e^-4	0.975	UTR_3_PRIME CheA75a
3R	18029758	3R_18029758_SNP [dm3] 3R_22204036_SNP [dm6]	C	A	7.376e^-4	0.975	INTRON SKIP & 1 other
3L	11235268	3L_11235268_SNP [dm3] 3L_11242168_SNP [dm6]	G	C	7.377e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	10797665	2L_10797665_SNP [dm3] 2L_10797665_SNP [dm6]	A	G	7.386e^-4	0.975	INTRON CG31869
X	18268234	X_18268234_SNP [dm3] X_18374201_SNP [dm6]	C	G	7.401e^-4	0.975	DOWNSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl
X	21878461	X_21878461_SNP [dm3] X_22476625_SNP [dm6]	A	C	7.410e^-4	0.975	INTRON CG12576
3L	2894000	3L_2894000_SNP [dm3] 3L_2894000_SNP [dm6]	C	T	7.435e^-4	0.975	INTERGENIC
3L	18143699	3L_18143699_DEL [dm3] 3L_18150599_DEL [dm6]	AAGA	A	7.460e^-4	0.975	INTRON CG7330
3R	22722463	3R_22722463_SNP [dm3] 3R_26896741_SNP [dm6]	C	G	7.474e^-4	0.975	INTRON T48	regulatory region REDfly_CRMs
3R	15072006	3R_15072006_SNP [dm3] 3R_19246284_SNP [dm6]	A	T	7.487e^-4	0.975	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12859421	2R_12859421_SNP [dm3] 2R_16971916_SNP [dm6]	T	C	7.492e^-4	0.975	DOWNSTREAM CR44377 INTERGENIC
2L	16955278	2L_16955278_DEL [dm3] 2L_16955278_DEL [dm6]	TGGACTGGCA	C	7.520e^-4	0.975	INTERGENIC
3R	26781285	3R_26781285_SNP [dm3] 3R_30955563_SNP [dm6]	G	C	7.522e^-4	0.975	INTERGENIC
2L	8195614	2L_8195614_INS [dm3] 2L_8195614_INS [dm6]	A	AA	7.549e^-4	0.975	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12329481	X_12329481_SNP [dm3] X_12435448_SNP [dm6]	T	C	7.557e^-4	0.975	INTRON Pkcdelta
2R	15910629	2R_15910629_SNP [dm3] 2R_20023124_SNP [dm6]	A	G	7.563e^-4	0.975	INTERGENIC
3L	12009465	3L_12009465_SNP [dm3] 3L_12016365_SNP [dm6]	C	T	7.570e^-4	0.975	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	14386099	3L_14386099_SNP [dm3] 3L_14392999_SNP [dm6]	A	G	7.571e^-4	0.975	INTERGENIC
X	14764068	X_14764068_SNP [dm3] X_14870035_SNP [dm6]	C	T	7.582e^-4	0.975	INTRON Flo2 & 1 other
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	7.586e^-4	0.975	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6743273	2R_6743273_SNP [dm3] 2R_10855768_SNP [dm6]	A	G	7.595e^-4	0.975	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	14376911	2L_14376911_SNP [dm3] 2L_14376911_SNP [dm6]	G	C	7.609e^-4	0.975	INTERGENIC
2L	5743742	2L_5743742_SNP [dm3] 2L_5743742_SNP [dm6]	T	A	7.609e^-4	0.975	INTRON CG11030
X	9533467	X_9533467_SNP [dm3] X_9639434_SNP [dm6]	T	A	7.613e^-4	0.975	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.472e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01289

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.1938	0.0406

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1357 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	1.262e^-7	0.111	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	1.262e^-7	0.111	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	3.853e^-7	0.227	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4727026	2R_4727026_SNP [dm3] 2R_8839521_SNP [dm6]	A	G	2.204e^-6	0.726	INTRON sns
2L	11486010	2L_11486010_SNP [dm3] 2L_11486010_SNP [dm6]	A	G	2.942e^-6	0.726	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11486093	2L_11486093_SNP [dm3] 2L_11486093_SNP [dm6]	A	C	3.916e^-6	0.726	UTR_5_PRIME sala UTR_3_PRIME CG43355 UPSTREAM sala DOWNSTREAM CG43355	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8413602	3L_8413602_DEL [dm3] 3L_8420502_DEL [dm6]	ATGT	A	3.940e^-6	0.726	INTRON CG32354
3L	13836110	3L_13836110_SNP [dm3] 3L_13843010_SNP [dm6]	G	T	4.461e^-6	0.726	UTR_5_PRIME CG8750 UPSTREAM CG8757 & 1 other
2L	15248135	2L_15248135_SNP [dm3] 2L_15248135_SNP [dm6]	A	T	5.517e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	1756555	2R_1756555_SNP [dm3] 2R_5869050_SNP [dm6]	A	T	6.212e^-6	0.726	INTERGENIC
2L	15248161	2L_15248161_SNP [dm3] 2L_15248161_SNP [dm6]	T	A	6.741e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248164	2L_15248164_SNP [dm3] 2L_15248164_SNP [dm6]	G	C	6.741e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248172	2L_15248172_SNP [dm3] 2L_15248172_SNP [dm6]	T	A	6.741e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248180	2L_15248180_INS [dm3] 2L_15248180_INS [dm6]	G	GT	6.741e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248273	2L_15248273_DEL [dm3] 2L_15248273_DEL [dm6]	GCAG	G	6.992e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248188	2L_15248188_SNP [dm3] 2L_15248188_SNP [dm6]	A	T	7.007e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	11485417	2L_11485417_SNP [dm3] 2L_11485417_SNP [dm6]	C	T	7.442e^-6	0.726	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15248211	2L_15248211_SNP [dm3] 2L_15248211_SNP [dm6]	C	T	8.039e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248233	2L_15248233_SNP [dm3] 2L_15248233_SNP [dm6]	G	C	8.039e^-6	0.726	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	2434700	3R_2434700_SNP [dm3] 3R_6608978_SNP [dm6]	G	A	8.220e^-6	0.726	UPSTREAM glob2 INTERGENIC
3L	13853242	3L_13853242_SNP [dm3] 3L_13860142_SNP [dm6]	A	C	1.031e^-5	0.867	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
2L	973537	2L_973537_SNP [dm3] 2L_973537_SNP [dm6]	C	T	1.204e^-5	0.946	INTERGENIC
3L	10674618	3L_10674618_SNP [dm3] 3L_10681518_SNP [dm6]	T	C	1.232e^-5	0.946	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	1756660	2R_1756660_SNP [dm3] 2R_5869155_SNP [dm6]	C	T	1.614e^-5	0.979	INTERGENIC
3L	13853140	3L_13853140_SNP [dm3] 3L_13860040_SNP [dm6]	A	T	1.774e^-5	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13854094	3L_13854094_SNP [dm3] 3L_13860994_SNP [dm6]	G	A	1.774e^-5	0.979	SYNONYMOUS_CODING CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15248202	2L_15248202_SNP [dm3] 2L_15248202_SNP [dm6]	A	T	1.835e^-5	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	2.039e^-5	0.979	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	13829341	3L_13829341_SNP [dm3] 3L_13836241_SNP [dm6]	T	G	2.089e^-5	0.979	INTERGENIC
2L	11578470	2L_11578470_SNP [dm3] 2L_11578470_SNP [dm6]	A	G	2.136e^-5	0.979	INTERGENIC
3L	11187892	3L_11187892_SNP [dm3] 3L_11194792_SNP [dm6]	T	C	2.165e^-5	0.979	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	11188004	3L_11188004_SNP [dm3] 3L_11194904_SNP [dm6]	T	C	2.165e^-5	0.979	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	2.181e^-5	0.979	INTRON CG32103
3L	13829293	3L_13829293_SNP [dm3] 3L_13836193_SNP [dm6]	G	A	2.329e^-5	0.979	INTERGENIC
3L	13836141	3L_13836141_SNP [dm3] 3L_13843041_SNP [dm6]	G	A	2.329e^-5	0.979	UPSTREAM CG8757 & 2 others INTERGENIC
2L	3102052	2L_3102052_SNP [dm3] 2L_3102052_SNP [dm6]	T	C	2.700e^-5	0.979	INTRON toc
2L	11485450	2L_11485450_SNP [dm3] 2L_11485450_SNP [dm6]	T	C	2.713e^-5	0.979	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1756321	2R_1756321_DEL [dm3] 2R_5868816_DEL [dm6]	TAGAATATTTATTCTTGATC...	T	2.830e^-5	0.979	INTERGENIC
2R	6740549	2R_6740549_SNP [dm3] 2R_10853044_SNP [dm6]	A	G	2.855e^-5	0.979	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	15248160	2L_15248160_SNP [dm3] 2L_15248160_SNP [dm6]	T	C	2.897e^-5	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	4135967	3R_4135967_SNP [dm3] 3R_8310245_SNP [dm6]	A	T	2.972e^-5	0.979	UTR_5_PRIME CG11693 DOWNSTREAM CG11694 INTRON CG11693	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13045522	2R_13045522_SNP [dm3] 2R_17158017_SNP [dm6]	A	G	2.992e^-5	0.979	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
3L	11586119	3L_11586119_SNP [dm3] 3L_11593019_SNP [dm6]	A	G	3.011e^-5	0.979	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
2L	6752117	2L_6752117_SNP [dm3] 2L_6752117_SNP [dm6]	T	C	3.209e^-5	0.979	INTRON CG11221
2L	15248234	2L_15248234_SNP [dm3] 2L_15248234_SNP [dm6]	T	C	3.282e^-5	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	12406434	3L_12406434_SNP [dm3] 3L_12413334_SNP [dm6]	T	C	3.510e^-5	0.979	INTRON CG32103
3L	11187715	3L_11187715_SNP [dm3] 3L_11194615_SNP [dm6]	G	A	3.524e^-5	0.979	INTRON GlcAT-P
2L	3083578	2L_3083578_SNP [dm3] 2L_3083578_SNP [dm6]	C	T	3.641e^-5	0.979	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5985151	3L_5985151_SNP [dm3] 3L_5992051_SNP [dm6]	G	C	3.892e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4068127	X_4068127_SNP [dm3] X_4174094_SNP [dm6]	T	C	3.915e^-5	0.979	INTRON Fas2
X	4068131	X_4068131_SNP [dm3] X_4174098_SNP [dm6]	G	C	3.915e^-5	0.979	INTRON Fas2
2L	16043751	2L_16043751_SNP [dm3] 2L_16043751_SNP [dm6]	A	T	3.938e^-5	0.979	UPSTREAM BicC INTRON BicC & 1 other
3R	25999651	3R_25999651_SNP [dm3] 3R_30173929_SNP [dm6]	G	A	4.212e^-5	0.979	INTRON Mlc2
3L	12406414	3L_12406414_SNP [dm3] 3L_12413314_SNP [dm6]	G	T	4.275e^-5	0.979	INTRON CG32103
2R	19704491	2R_19704491_SNP [dm3] 2R_23816968_SNP [dm6]	C	T	4.316e^-5	0.979	INTRON CG4797
3R	2435982	3R_2435982_SNP [dm3] 3R_6610260_SNP [dm6]	T	C	4.482e^-5	0.979	INTERGENIC
2R	13044615	2R_13044615_SNP [dm3] 2R_17157110_SNP [dm6]	C	T	4.556e^-5	0.979	UTR_3_PRIME CG17290 & 1 other
2L	7844229	2L_7844229_SNP [dm3] 2L_7844229_SNP [dm6]	G	A	4.618e^-5	0.979	DOWNSTREAM CG14535 INTERGENIC
2L	7844242	2L_7844242_SNP [dm3] 2L_7844242_SNP [dm6]	A	C	4.618e^-5	0.979	DOWNSTREAM CG14535 INTERGENIC
3L	4099915	3L_4099915_SNP [dm3] 3L_4099915_SNP [dm6]	T	C	4.698e^-5	0.979	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	2554573	3L_2554573_SNP [dm3] 3L_2554573_SNP [dm6]	A	T	4.995e^-5	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	11189451	3L_11189451_SNP [dm3] 3L_11196351_SNP [dm6]	G	A	5.159e^-5	0.979	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3083505	2L_3083505_INS [dm3] 2L_3083505_INS [dm6]	C	CGACATCC	5.295e^-5	0.979	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	11486051	2L_11486051_SNP [dm3] 2L_11486051_SNP [dm6]	G	T	5.391e^-5	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14310944	3L_14310944_SNP [dm3] 3L_14317844_SNP [dm6]	T	A	5.421e^-5	0.979	INTRON fz
X	2475865	X_2475865_SNP [dm3] X_2581832_SNP [dm6]	T	C	5.486e^-5	0.979	UPSTREAM CG13759 INTRON CG13759
3L	13837633	3L_13837633_SNP [dm3] 3L_13844533_SNP [dm6]	T	G	5.524e^-5	0.979	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2434943	3R_2434943_SNP [dm3] 3R_6609221_SNP [dm6]	G	A	5.584e^-5	0.979	UPSTREAM glob2 INTERGENIC
2L	15248088	2L_15248088_SNP [dm3] 2L_15248088_SNP [dm6]	T	A	5.676e^-5	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	13632552	2L_13632552_SNP [dm3] 2L_13632552_SNP [dm6]	C	A	5.769e^-5	0.979	DOWNSTREAM CR43410 INTRON kuz
2L	13632565	2L_13632565_SNP [dm3] 2L_13632565_SNP [dm6]	T	C	5.769e^-5	0.979	DOWNSTREAM CR43410 INTRON kuz
2L	13632570	2L_13632570_SNP [dm3] 2L_13632570_SNP [dm6]	C	G	5.769e^-5	0.979	DOWNSTREAM CR43410 INTRON kuz
2R	18755771	2R_18755771_SNP [dm3] 2R_22868248_SNP [dm6]	T	C	6.076e^-5	0.979	UTR_5_PRIME fd59A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22747303	3R_22747303_INS [dm3] 3R_26921581_INS [dm6]	A	AG	6.125e^-5	0.979	INTRON sda
3L	13853232	3L_13853232_SNP [dm3] 3L_13860132_SNP [dm6]	C	A	6.212e^-5	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
2L	7844231	2L_7844231_SNP [dm3] 2L_7844231_SNP [dm6]	T	A	6.238e^-5	0.979	DOWNSTREAM CG14535 INTERGENIC
3L	13856161	3L_13856161_SNP [dm3] 3L_13863061_SNP [dm6]	C	A	6.297e^-5	0.979	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5985152	3L_5985152_SNP [dm3] 3L_5992052_SNP [dm6]	A	G	6.886e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6784933	2R_6784933_INS [dm3] 2R_10897428_INS [dm6]	T	TT	7.184e^-5	0.979	DOWNSTREAM Rpb5 & 1 other INTRON CG7712	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
3L	22885109	3L_22885109_SNP [dm3] 3L_22892009_SNP [dm6]	A	G	7.252e^-5	0.979	NON_SYNONYMOUS_CODING slif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13844706	3L_13844706_SNP [dm3] 3L_13851606_SNP [dm6]	A	G	7.346e^-5	0.979	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13844823	3L_13844823_SNP [dm3] 3L_13851723_SNP [dm6]	C	A	7.346e^-5	0.979	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
X	8633311	X_8633311_SNP [dm3] X_8739278_SNP [dm6]	A	G	7.555e^-5	0.979	INTERGENIC
3L	9313008	3L_9313008_SNP [dm3] 3L_9319908_SNP [dm6]	G	A	7.666e^-5	0.979	INTERGENIC
3L	18142950	3L_18142950_SNP [dm3] 3L_18149850_SNP [dm6]	T	C	7.670e^-5	0.979	INTRON CG7330
X	4068190	X_4068190_SNP [dm3] X_4174157_SNP [dm6]	A	C	7.716e^-5	0.979	INTRON Fas2
3L	13835565	3L_13835565_SNP [dm3] 3L_13842465_SNP [dm6]	G	C	7.787e^-5	0.979	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13853228	3L_13853228_SNP [dm3] 3L_13860128_SNP [dm6]	C	T	7.787e^-5	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3L	11187945	3L_11187945_SNP [dm3] 3L_11194845_SNP [dm6]	C	A	8.100e^-5	0.979	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	16043771	2L_16043771_SNP [dm3] 2L_16043771_SNP [dm6]	G	C	8.235e^-5	0.979	UPSTREAM BicC INTRON BicC & 1 other
3L	12591599	3L_12591599_SNP [dm3] 3L_12598499_SNP [dm6]	A	G	8.381e^-5	0.979	INTERGENIC
X	3765012	X_3765012_SNP [dm3] X_3870979_SNP [dm6]	T	G	8.615e^-5	0.979	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	10734120	3L_10734120_SNP [dm3] 3L_10741020_SNP [dm6]	T	A	8.652e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13829043	3L_13829043_SNP [dm3] 3L_13835943_SNP [dm6]	C	T	8.714e^-5	0.979	INTERGENIC
2L	12953184	2L_12953184_SNP [dm3] 2L_12953184_SNP [dm6]	T	C	9.056e^-5	0.979	INTERGENIC
2L	7844264	2L_7844264_SNP [dm3] 2L_7844264_SNP [dm6]	T	A	9.186e^-5	0.979	DOWNSTREAM CG14535 INTERGENIC
2L	7844269	2L_7844269_INS [dm3] 2L_7844269_INS [dm6]	T	TT	9.186e^-5	0.979	DOWNSTREAM CG14535 INTERGENIC
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	9.298e^-5	0.979	UTR_3_PRIME axo INTRON axo
2R	4631641	2R_4631641_SNP [dm3] 2R_8744136_SNP [dm6]	C	T	9.430e^-5	0.979	INTRON CG8740 EXON CR44277
3L	2210668	3L_2210668_SNP [dm3] 3L_2210668_SNP [dm6]	G	A	9.471e^-5	0.979	DOWNSTREAM CG15878 INTERGENIC
3R	18894326	3R_18894326_SNP [dm3] 3R_23068604_SNP [dm6]	G	A	9.528e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18894331	3R_18894331_SNP [dm3] 3R_23068609_SNP [dm6]	G	T	9.528e^-5	0.979	INTERGENIC
3L	13835662	3L_13835662_SNP [dm3] 3L_13842562_SNP [dm6]	T	C	9.781e^-5	0.979	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13836564	3L_13836564_SNP [dm3] 3L_13843464_SNP [dm6]	G	C	9.781e^-5	0.979	UPSTREAM Tsp68C & 1 other INTERGENIC
2R	13044434	2R_13044434_SNP [dm3] 2R_17156929_SNP [dm6]	A	T	9.812e^-5	0.979	UTR_3_PRIME CG17290 & 1 other
2R	6739540	2R_6739540_SNP [dm3] 2R_10852035_SNP [dm6]	T	C	9.837e^-5	0.979	INTRON CG30015
2R	13044562	2R_13044562_SNP [dm3] 2R_17157057_SNP [dm6]	T	G	1.001e^-4	0.979	UTR_3_PRIME CG17290 & 1 other
3L	11582093	3L_11582093_SNP [dm3] 3L_11588993_SNP [dm6]	T	G	1.011e^-4	0.979	UPSTREAM CG7377 INTERGENIC
2R	8534563	2R_8534563_SNP [dm3] 2R_12647058_SNP [dm6]	G	C	1.017e^-4	0.979	INTRON CG8785
2R	3858347	2R_3858347_SNP [dm3] 2R_7970842_SNP [dm6]	C	A	1.022e^-4	0.979	SYNONYMOUS_CODING CG8726
3L	14053808	3L_14053808_SNP [dm3] 3L_14060708_SNP [dm6]	T	C	1.024e^-4	0.979	INTRON CG32138
3L	17493227	3L_17493227_SNP [dm3] 3L_17500127_SNP [dm6]	C	A	1.029e^-4	0.979	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9532172	2L_9532172_SNP [dm3] 2L_9532172_SNP [dm6]	C	T	1.036e^-4	0.979	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3L	2912148	3L_2912148_SNP [dm3] 3L_2912148_SNP [dm6]	C	G	1.039e^-4	0.979	INTRON Shab
2R	5106039	2R_5106039_SNP [dm3] 2R_9218534_SNP [dm6]	G	A	1.057e^-4	0.979	INTERGENIC
2L	11485514	2L_11485514_SNP [dm3] 2L_11485514_SNP [dm6]	C	T	1.058e^-4	0.979	SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14035453	3R_14035453_SNP [dm3] 3R_18209731_SNP [dm6]	C	G	1.069e^-4	0.979	DOWNSTREAM CG44158 INTRON CG7985
2L	5518426	2L_5518426_SNP [dm3] 2L_5518426_SNP [dm6]	C	G	1.080e^-4	0.979	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	2436136	3R_2436136_SNP [dm3] 3R_6610414_SNP [dm6]	C	G	1.086e^-4	0.979	INTERGENIC
3L	13853114	3L_13853114_DEL [dm3] 3L_13860014_DEL [dm6]	GTAGT	G	1.098e^-4	0.979	DOWNSTREAM CG8745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	1.101e^-4	0.979	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3R	18894392	3R_18894392_SNP [dm3] 3R_23068670_SNP [dm6]	C	T	1.135e^-4	0.979	INTERGENIC
3L	13829027	3L_13829027_SNP [dm3] 3L_13835927_SNP [dm6]	G	T	1.140e^-4	0.979	INTERGENIC
3L	13829032	3L_13829032_SNP [dm3] 3L_13835932_SNP [dm6]	C	G	1.140e^-4	0.979	INTERGENIC
3L	13829037	3L_13829037_SNP [dm3] 3L_13835937_SNP [dm6]	T	G	1.140e^-4	0.979	INTERGENIC
2R	9867005	2R_9867005_SNP [dm3] 2R_13979500_SNP [dm6]	A	C	1.154e^-4	0.979	START_GAINED CG6701 UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1756775	2R_1756775_SNP [dm3] 2R_5869270_SNP [dm6]	T	C	1.166e^-4	0.979	INTERGENIC
2R	1761920	2R_1761920_SNP [dm3] 2R_5874415_SNP [dm6]	T	C	1.166e^-4	0.979	INTERGENIC
3L	6676408	3L_6676408_SNP [dm3] 3L_6683308_SNP [dm6]	C	T	1.176e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4970262	3L_4970262_SNP [dm3] 3L_4970262_SNP [dm6]	T	C	1.177e^-4	0.979	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7051296	2R_7051296_INS [dm3] 2R_11163791_INS [dm6]	A	AA	1.179e^-4	0.979	INTRON shn & 1 other
3L	12406363	3L_12406363_SNP [dm3] 3L_12413263_SNP [dm6]	T	A	1.187e^-4	0.979	INTRON CG32103
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	1.187e^-4	0.979	INTRON CG32103
2L	11452343	2L_11452343_SNP [dm3] 2L_11452343_SNP [dm6]	A	G	1.189e^-4	0.979	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11452344	2L_11452344_SNP [dm3] 2L_11452344_SNP [dm6]	G	A	1.189e^-4	0.979	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19614275	X_19614275_SNP [dm3] X_19720242_SNP [dm6]	A	G	1.206e^-4	0.979	INTRON CG12531
2L	15248032	2L_15248032_SNP [dm3] 2L_15248032_SNP [dm6]	C	T	1.245e^-4	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	13853091	3L_13853091_INS [dm3] 3L_13859991_INS [dm6]	A	AA	1.249e^-4	0.979	UTR_3_PRIME Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	12539359	3R_12539359_SNP [dm3] 3R_16713637_SNP [dm6]	C	T	1.249e^-4	0.979	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
3R	2435983	3R_2435983_SNP [dm3] 3R_6610261_SNP [dm6]	A	C	1.272e^-4	0.979	INTERGENIC
2R	14742481	2R_14742481_SNP [dm3] 2R_18854976_SNP [dm6]	T	C	1.312e^-4	0.979	SYNONYMOUS_CODING Jheh1 DOWNSTREAM Jheh2	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2L	16043780	2L_16043780_SNP [dm3] 2L_16043780_SNP [dm6]	T	A	1.318e^-4	0.979	UPSTREAM BicC INTRON BicC & 1 other
3L	2228035	3L_2228035_SNP [dm3] 3L_2228035_SNP [dm6]	C	T	1.319e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14334466	3L_14334466_SNP [dm3] 3L_14341366_SNP [dm6]	T	C	1.340e^-4	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	13883096	3L_13883096_SNP [dm3] 3L_13889996_SNP [dm6]	C	A	1.361e^-4	0.979	INTRON dysc
2R	6741790	2R_6741790_SNP [dm3] 2R_10854285_SNP [dm6]	C	T	1.382e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2R	6740923	2R_6740923_SNP [dm3] 2R_10853418_SNP [dm6]	A	T	1.388e^-4	0.979	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740924	2R_6740924_SNP [dm3] 2R_10853419_SNP [dm6]	A	T	1.388e^-4	0.979	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3996798	3R_3996798_SNP [dm3] 3R_8171076_SNP [dm6]	G	A	1.398e^-4	0.979	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3870561	X_3870561_SNP [dm3] X_3976528_SNP [dm6]	C	T	1.408e^-4	0.979	INTERGENIC
3R	2651113	3R_2651113_SNP [dm3] 3R_6825391_SNP [dm6]	T	C	1.434e^-4	0.979	SYNONYMOUS_CODING Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	6741762	2R_6741762_SNP [dm3] 2R_10854257_SNP [dm6]	G	A	1.441e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	5789831	3L_5789831_SNP [dm3] 3L_5796731_SNP [dm6]	A	G	1.444e^-4	0.979	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
X	3765122	X_3765122_SNP [dm3] X_3871089_SNP [dm6]	T	C	1.453e^-4	0.979	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	1900184	3L_1900184_SNP [dm3] 3L_1900184_SNP [dm6]	C	A	1.461e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
2R	12396955	2R_12396955_SNP [dm3] 2R_16509450_SNP [dm6]	T	C	1.462e^-4	0.979	INTRON Sema-2a
2R	1081478	2R_1081478_SNP [dm3] 2R_5193973_SNP [dm6]	T	C	1.465e^-4	0.979	INTRON Nipped-A	transposable element FlyBase
2R	12604445	2R_12604445_SNP [dm3] 2R_16716940_SNP [dm6]	C	T	1.500e^-4	0.979	INTRON CG30463
3L	8593243	3L_8593243_SNP [dm3] 3L_8600143_SNP [dm6]	T	C	1.504e^-4	0.979	SYNONYMOUS_CODING Nelf-E UPSTREAM RpL14 DOWNSTREAM CG43078
3L	10676402	3L_10676402_SNP [dm3] 3L_10683302_SNP [dm6]	G	A	1.512e^-4	0.979	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7110779	3L_7110779_SNP [dm3] 3L_7117679_SNP [dm6]	G	A	1.517e^-4	0.979	INTRON form3
X	8909782	X_8909782_SNP [dm3] X_9015749_SNP [dm6]	C	T	1.522e^-4	0.979	INTRON CR43836 & 1 other
2L	3083236	2L_3083236_SNP [dm3] 2L_3083236_SNP [dm6]	G	T	1.533e^-4	0.979	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14334482	3L_14334482_SNP [dm3] 3L_14341382_SNP [dm6]	A	G	1.537e^-4	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl
2R	13797553	2R_13797553_SNP [dm3] 2R_17910048_SNP [dm6]	G	A	1.543e^-4	0.979	INTRON Elk
3L	13850246	3L_13850246_SNP [dm3] 3L_13857146_SNP [dm6]	T	C	1.567e^-4	0.979	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13850645	3L_13850645_SNP [dm3] 3L_13857545_SNP [dm6]	C	T	1.567e^-4	0.979	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13850703	3L_13850703_SNP [dm3] 3L_13857603_SNP [dm6]	G	A	1.567e^-4	0.979	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	14386099	3L_14386099_SNP [dm3] 3L_14392999_SNP [dm6]	A	G	1.610e^-4	0.979	INTERGENIC
2R	6741702	2R_6741702_DEL [dm3] 2R_10854197_DEL [dm6]	GAGCGGCTAACAGCGCTG...	G	1.648e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2R	17582635	2R_17582635_SNP [dm3] 2R_21695130_SNP [dm6]	G	C	1.658e^-4	0.979	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10676607	3L_10676607_SNP [dm3] 3L_10683507_SNP [dm6]	T	C	1.666e^-4	0.979	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3861865	X_3861865_SNP [dm3] X_3967832_SNP [dm6]	T	C	1.675e^-4	0.979	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3L	19239731	3L_19239731_SNP [dm3] 3L_19246631_SNP [dm6]	T	G	1.680e^-4	0.979	INTERGENIC
3L	13853035	3L_13853035_SNP [dm3] 3L_13859935_SNP [dm6]	C	T	1.684e^-4	0.979	UTR_3_PRIME Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13853392	3L_13853392_SNP [dm3] 3L_13860292_SNP [dm6]	T	C	1.684e^-4	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11485913	2L_11485913_SNP [dm3] 2L_11485913_SNP [dm6]	T	G	1.712e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485915	2L_11485915_SNP [dm3] 2L_11485915_SNP [dm6]	C	A	1.712e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4636209	3L_4636209_SNP [dm3] 3L_4636209_SNP [dm6]	A	G	1.725e^-4	0.979	DOWNSTREAM axo INTRON axo
2L	8322253	2L_8322253_SNP [dm3] 2L_8322253_SNP [dm6]	A	T	1.752e^-4	0.979	DOWNSTREAM CG7787 INTRON CG7781	TF binding site mE1_TFBS_cad
3R	20028332	3R_20028332_SNP [dm3] 3R_24202610_SNP [dm6]	T	C	1.764e^-4	0.979	INTRON twin
2R	10774709	2R_10774709_DEL [dm3] 2R_14887204_DEL [dm6]	TCTACCCT	T	1.779e^-4	0.979	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
3R	18894358	3R_18894358_SNP [dm3] 3R_23068636_SNP [dm6]	G	T	1.793e^-4	0.979	INTERGENIC
2R	10188146	2R_10188146_SNP [dm3] 2R_14300641_SNP [dm6]	C	T	1.795e^-4	0.979	SYNONYMOUS_CODING tej DOWNSTREAM Ih
X	2475838	X_2475838_SNP [dm3] X_2581805_SNP [dm6]	C	T	1.799e^-4	0.979	UPSTREAM CG13759 INTRON CG13759
2R	4747543	2R_4747543_SNP [dm3] 2R_8860038_SNP [dm6]	T	C	1.818e^-4	0.979	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb mE1_TFBS_Trl
3L	14334467	3L_14334467_SNP [dm3] 3L_14341367_SNP [dm6]	G	C	1.835e^-4	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	1.836e^-4	0.979	INTERGENIC
2R	17685916	2R_17685916_SNP [dm3] 2R_21798411_SNP [dm6]	G	A	1.838e^-4	0.979	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3108154	X_3108154_INS [dm3] X_3214121_INS [dm6]	T	TT	1.858e^-4	0.979	INTRON dnc
3R	17828468	3R_17828468_INS [dm3] 3R_22002746_INS [dm6]	A	AACA	1.860e^-4	0.979	INTRON Eip93F
3R	17828473	3R_17828473_SNP [dm3] 3R_22002751_SNP [dm6]	A	C	1.860e^-4	0.979	INTRON Eip93F
3L	5304768	3L_5304768_SNP [dm3] 3L_5311668_SNP [dm6]	C	T	1.860e^-4	0.979	INTERGENIC
2R	3956973	2R_3956973_SNP [dm3] 2R_8069468_SNP [dm6]	C	T	1.864e^-4	0.979	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18451769	2R_18451769_SNP [dm3] 2R_22564264_SNP [dm6]	C	T	1.885e^-4	0.979	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13882319	3L_13882319_SNP [dm3] 3L_13889219_SNP [dm6]	A	G	1.895e^-4	0.979	INTRON dysc
3L	13882320	3L_13882320_SNP [dm3] 3L_13889220_SNP [dm6]	T	C	1.895e^-4	0.979	INTRON dysc
3L	2521514	3L_2521514_DEL [dm3] 3L_2521514_DEL [dm6]	TCCAG	T	1.898e^-4	0.979	INTRON Spn
2R	6739887	2R_6739887_SNP [dm3] 2R_10852382_SNP [dm6]	G	A	1.925e^-4	0.979	INTRON CG30015
2L	14333505	2L_14333505_SNP [dm3] 2L_14333505_SNP [dm6]	C	G	1.930e^-4	0.979	SYNONYMOUS_CODING ms_2_34Fe UPSTREAM CG33090
3L	11365750	3L_11365750_SNP [dm3] 3L_11372650_SNP [dm6]	T	C	1.931e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2023313	3L_2023313_SNP [dm3] 3L_2023313_SNP [dm6]	A	G	1.937e^-4	0.979	SYNONYMOUS_CODING CG42356
3L	8854776	3L_8854776_SNP [dm3] 3L_8861676_SNP [dm6]	A	G	1.947e^-4	0.979	INTRON dally
3L	16905597	3L_16905597_SNP [dm3] 3L_16912497_SNP [dm6]	G	A	1.949e^-4	0.979	INTRON Lmpt
3L	13870787	3L_13870787_SNP [dm3] 3L_13877687_SNP [dm6]	C	T	1.951e^-4	0.979	INTRON dysc
X	8093762	X_8093762_INS [dm3] X_8199729_INS [dm6]	C	CTTGAC	1.952e^-4	0.979	INTRON sdt
2R	6740379	2R_6740379_SNP [dm3] 2R_10852874_SNP [dm6]	G	T	1.959e^-4	0.979	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	9359136	3L_9359136_SNP [dm3] 3L_9366036_SNP [dm6]	G	A	1.972e^-4	0.979	SYNONYMOUS_CODING Klp67A DOWNSTREAM CG4447	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	960831	3R_960831_SNP [dm3] 3R_5135109_SNP [dm6]	C	G	1.983e^-4	0.979	INTERGENIC
3R	960832	3R_960832_SNP [dm3] 3R_5135110_SNP [dm6]	G	C	1.983e^-4	0.979	INTERGENIC
X	13438132	X_13438132_INS [dm3] X_13544099_INS [dm6]	A	AA	1.995e^-4	0.979	INTRON Cpr12A
X	13438136	X_13438136_INS [dm3] X_13544103_INS [dm6]	C	CTTATC	1.995e^-4	0.979	INTRON Cpr12A
X	13438160	X_13438160_SNP [dm3] X_13544127_SNP [dm6]	A	G	1.995e^-4	0.979	INTRON Cpr12A
3R	2390341	3R_2390341_SNP [dm3] 3R_6564619_SNP [dm6]	C	A	2.028e^-4	0.979	INTRON dpr11
3L	13855289	3L_13855289_SNP [dm3] 3L_13862189_SNP [dm6]	T	C	2.028e^-4	0.979	INTRON CG8745
3R	2434944	3R_2434944_SNP [dm3] 3R_6609222_SNP [dm6]	C	G	2.031e^-4	0.979	UPSTREAM glob2 INTERGENIC
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	2.043e^-4	0.979	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	11578518	2L_11578518_SNP [dm3] 2L_11578518_SNP [dm6]	C	T	2.047e^-4	0.979	INTERGENIC
3L	6677350	3L_6677350_SNP [dm3] 3L_6684250_SNP [dm6]	A	T	2.048e^-4	0.979	INTERGENIC
2R	8584173	2R_8584173_SNP [dm3] 2R_12696668_SNP [dm6]	T	G	2.057e^-4	0.979	INTERGENIC
3R	24762360	3R_24762360_SNP [dm3] 3R_28936638_SNP [dm6]	T	C	2.060e^-4	0.979	INTRON CG14521
X	3762416	X_3762416_SNP [dm3] X_3868383_SNP [dm6]	C	T	2.064e^-4	0.979	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4190518	2L_4190518_DEL [dm3] 2L_4190518_DEL [dm6]	ACA	A	2.066e^-4	0.979	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11406417	3R_11406417_SNP [dm3] 3R_15580695_SNP [dm6]	G	C	2.071e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18894359	3R_18894359_SNP [dm3] 3R_23068637_SNP [dm6]	C	T	2.092e^-4	0.979	INTERGENIC
3L	15479166	3L_15479166_SNP [dm3] 3L_15486066_SNP [dm6]	C	A	2.092e^-4	0.979	UPSTREAM Ran-like INTERGENIC
2L	17457632	2L_17457632_SNP [dm3] 2L_17457632_SNP [dm6]	G	T	2.093e^-4	0.979	SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2L	17457657	2L_17457657_SNP [dm3] 2L_17457657_SNP [dm6]	A	G	2.093e^-4	0.979	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2R	6741630	2R_6741630_SNP [dm3] 2R_10854125_SNP [dm6]	G	A	2.094e^-4	0.979	UTR_5_PRIME CG30015 INTRON CG30015 EXON CR45136
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	2.106e^-4	0.979	INTERGENIC
2R	1411398	2R_1411398_SNP [dm3] 2R_5523893_SNP [dm6]	C	G	2.118e^-4	0.979	UPSTREAM CG30438 INTRON CG30438
3L	4759671	3L_4759671_SNP [dm3] 3L_4759671_SNP [dm6]	C	A	2.123e^-4	0.979	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	2.123e^-4	0.979	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759743	3L_4759743_SNP [dm3] 3L_4759743_SNP [dm6]	C	T	2.123e^-4	0.979	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9866986	2R_9866986_SNP [dm3] 2R_13979481_SNP [dm6]	T	G	2.161e^-4	0.979	UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1425652	2R_1425652_SNP [dm3] 2R_5538147_SNP [dm6]	A	T	2.183e^-4	0.979	INTRON CG30438	transposable element FlyBase
2L	8755446	2L_8755446_SNP [dm3] 2L_8755446_SNP [dm6]	C	A	2.183e^-4	0.979	INTERGENIC
3L	13857042	3L_13857042_SNP [dm3] 3L_13863942_SNP [dm6]	T	G	2.190e^-4	0.979	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18626931	2L_18626931_SNP [dm3] 2L_18626931_SNP [dm6]	T	C	2.193e^-4	0.979	INTRON MESR3	TF binding site mE1_TFBS_Trl
3L	7110806	3L_7110806_SNP [dm3] 3L_7117706_SNP [dm6]	T	A	2.211e^-4	0.979	INTRON form3
2L	19246858	2L_19246858_DEL [dm3] 2L_19246858_DEL [dm6]	GG	G	2.224e^-4	0.979	INTERGENIC
2L	19246871	2L_19246871_SNP [dm3] 2L_19246871_SNP [dm6]	T	C	2.224e^-4	0.979	INTERGENIC
3R	2433577	3R_2433577_SNP [dm3] 3R_6607855_SNP [dm6]	T	A	2.227e^-4	0.979	DOWNSTREAM glob2 INTRON glob2
3R	2433645	3R_2433645_SNP [dm3] 3R_6607923_SNP [dm6]	T	A	2.227e^-4	0.979	UTR_3_PRIME glob2 INTRON glob2
2R	4733667	2R_4733667_SNP [dm3] 2R_8846162_SNP [dm6]	T	C	2.237e^-4	0.979	INTRON sns
2R	13040486	2R_13040486_SNP [dm3] 2R_17152981_SNP [dm6]	A	C	2.238e^-4	0.979	INTERGENIC
2R	13573630	2R_13573630_SNP [dm3] 2R_17686125_SNP [dm6]	A	C	2.268e^-4	0.979	SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2L	10974151	2L_10974151_SNP [dm3] 2L_10974151_SNP [dm6]	G	C	2.273e^-4	0.979	SYNONYMOUS_CODING abo DOWNSTREAM CG16743	TF binding site mE1_TFBS_HSA
3L	11195294	3L_11195294_SNP [dm3] 3L_11202194_SNP [dm6]	G	C	2.278e^-4	0.979	DOWNSTREAM CG14141 INTRON Plod
2R	1747397	2R_1747397_SNP [dm3] 2R_5859892_SNP [dm6]	G	A	2.279e^-4	0.979	UTR_3_PRIME dpr12
X	14253782	X_14253782_SNP [dm3] X_14359749_SNP [dm6]	A	T	2.280e^-4	0.979	INTRON dpr8
3L	11192362	3L_11192362_SNP [dm3] 3L_11199262_SNP [dm6]	T	C	2.289e^-4	0.979	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
3L	3037221	3L_3037221_SNP [dm3] 3L_3037221_SNP [dm6]	A	G	2.293e^-4	0.979	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3037222	3L_3037222_SNP [dm3] 3L_3037222_SNP [dm6]	A	G	2.293e^-4	0.979	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3037232	3L_3037232_SNP [dm3] 3L_3037232_SNP [dm6]	G	A	2.293e^-4	0.979	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3043865	3L_3043865_SNP [dm3] 3L_3043865_SNP [dm6]	T	A	2.293e^-4	0.979	DOWNSTREAM scramb2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	8593000	3L_8593000_SNP [dm3] 3L_8599900_SNP [dm6]	A	G	2.306e^-4	0.979	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
X	16425477	X_16425477_SNP [dm3] X_16531444_SNP [dm6]	G	A	2.307e^-4	0.979	INTRON para	TF binding site BDTNP1_TFBS_dl
2R	13002550	2R_13002550_SNP [dm3] 2R_17115045_SNP [dm6]	A	G	2.315e^-4	0.979	DOWNSTREAM CG15611 INTERGENIC
3L	1900205	3L_1900205_SNP [dm3] 3L_1900205_SNP [dm6]	A	G	2.329e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
2L	6066516	2L_6066516_SNP [dm3] 2L_6066516_SNP [dm6]	A	G	2.335e^-4	0.979	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11315438	X_11315438_SNP [dm3] X_11421405_SNP [dm6]	G	T	2.337e^-4	0.979	INTERGENIC
X	11315455	X_11315455_SNP [dm3] X_11421422_SNP [dm6]	C	G	2.337e^-4	0.979	INTERGENIC
2L	15302119	2L_15302119_SNP [dm3] 2L_15302119_SNP [dm6]	T	A	2.370e^-4	0.979	INTERGENIC
2L	15302138	2L_15302138_SNP [dm3] 2L_15302138_SNP [dm6]	G	T	2.370e^-4	0.979	INTERGENIC
2L	15302152	2L_15302152_SNP [dm3] 2L_15302152_SNP [dm6]	A	G	2.370e^-4	0.979	INTERGENIC
2L	15302225	2L_15302225_SNP [dm3] 2L_15302225_SNP [dm6]	G	A	2.370e^-4	0.979	INTERGENIC
2L	15302241	2L_15302241_SNP [dm3] 2L_15302241_SNP [dm6]	A	T	2.370e^-4	0.979	INTERGENIC
2L	11485831	2L_11485831_SNP [dm3] 2L_11485831_SNP [dm6]	A	G	2.375e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13835541	3L_13835541_SNP [dm3] 3L_13842441_SNP [dm6]	G	C	2.381e^-4	0.979	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
2L	7873097	2L_7873097_DEL [dm3] 2L_7873097_DEL [dm6]	ACCACCTGACA...	A	2.383e^-4	0.979	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
3L	4601220	3L_4601220_SNP [dm3] 3L_4601220_SNP [dm6]	T	A	2.385e^-4	0.979	INTRON Src64B
3L	15353733	3L_15353733_SNP [dm3] 3L_15360633_SNP [dm6]	C	T	2.391e^-4	0.979	INTERGENIC
X	3764992	X_3764992_SNP [dm3] X_3870959_SNP [dm6]	A	C	2.396e^-4	0.979	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
2R	13573631	2R_13573631_SNP [dm3] 2R_17686126_SNP [dm6]	A	G	2.397e^-4	0.979	NON_SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2R	18366427	2R_18366427_DEL [dm3] 2R_22478922_DEL [dm6]	ATCTACA	C	2.405e^-4	0.979	SPLICE_SITE_REGION CG4752 INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1385197	2R_1385197_SNP [dm3] 2R_5497692_SNP [dm6]	A	G	2.421e^-4	0.979	INTRON CG30438
3L	12310194	3L_12310194_SNP [dm3] 3L_12317094_SNP [dm6]	G	A	2.461e^-4	0.979	INTERGENIC
2R	1762089	2R_1762089_SNP [dm3] 2R_5874584_SNP [dm6]	G	A	2.464e^-4	0.979	INTERGENIC
3R	976312	3R_976312_SNP [dm3] 3R_5150590_SNP [dm6]	A	C	2.469e^-4	0.979	UPSTREAM dpr16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11671740	X_11671740_SNP [dm3] X_11777707_SNP [dm6]	A	G	2.478e^-4	0.979	INTRON dy
X	19044435	X_19044435_DEL [dm3] X_19150402_DEL [dm6]	AA	A	2.498e^-4	0.979	INTRON RhoGAP18B
3L	13882315	3L_13882315_SNP [dm3] 3L_13889215_SNP [dm6]	C	T	2.499e^-4	0.979	INTRON dysc
3L	13882346	3L_13882346_SNP [dm3] 3L_13889246_SNP [dm6]	G	A	2.499e^-4	0.979	INTRON dysc
3L	13882418	3L_13882418_SNP [dm3] 3L_13889318_SNP [dm6]	C	T	2.499e^-4	0.979	INTRON dysc
3L	13882485	3L_13882485_SNP [dm3] 3L_13889385_SNP [dm6]	A	T	2.499e^-4	0.979	INTRON dysc
3L	13882515	3L_13882515_SNP [dm3] 3L_13889415_SNP [dm6]	C	T	2.499e^-4	0.979	INTRON dysc
3L	13883085	3L_13883085_DEL [dm3] 3L_13889985_DEL [dm6]	GTGTT	G	2.499e^-4	0.979	INTRON dysc
3L	13869082	3L_13869082_SNP [dm3] 3L_13875982_SNP [dm6]	C	T	2.508e^-4	0.979	INTRON dysc
2L	19246915	2L_19246915_SNP [dm3] 2L_19246915_SNP [dm6]	G	T	2.543e^-4	0.979	INTERGENIC
2L	19246918	2L_19246918_SNP [dm3] 2L_19246918_SNP [dm6]	A	T	2.543e^-4	0.979	INTERGENIC
3L	11457754	3L_11457754_SNP [dm3] 3L_11464654_SNP [dm6]	G	A	2.544e^-4	0.979	SYNONYMOUS_CODING CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6643230	2R_6643230_SNP [dm3] 2R_10755725_SNP [dm6]	T	A	2.550e^-4	0.979	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13896798	2L_13896798_SNP [dm3] 2L_13896798_SNP [dm6]	C	T	2.552e^-4	0.979	SPLICE_SITE_REGION CenG1A INTRON CenG1A	TF binding site mE1_TFBS_cad
3L	8244847	3L_8244847_SNP [dm3] 3L_8251747_SNP [dm6]	A	T	2.559e^-4	0.979	INTRON Dscam4
3L	1900179	3L_1900179_SNP [dm3] 3L_1900179_SNP [dm6]	A	C	2.562e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
3L	1900232	3L_1900232_SNP [dm3] 3L_1900232_SNP [dm6]	C	T	2.562e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
3L	8593040	3L_8593040_SNP [dm3] 3L_8599940_SNP [dm6]	A	G	2.565e^-4	0.979	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3L	8593135	3L_8593135_SNP [dm3] 3L_8600035_SNP [dm6]	G	T	2.565e^-4	0.979	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3R	17828478	3R_17828478_SNP [dm3] 3R_22002756_SNP [dm6]	T	G	2.570e^-4	0.979	INTRON Eip93F
2R	16371035	2R_16371035_SNP [dm3] 2R_20483530_SNP [dm6]	G	T	2.604e^-4	0.979	INTERGENIC
3R	24786773	3R_24786773_SNP [dm3] 3R_28961051_SNP [dm6]	A	G	2.614e^-4	0.979	INTRON CG14521
X	3759805	X_3759805_SNP [dm3] X_3865772_SNP [dm6]	A	G	2.631e^-4	0.979	INTRON yin
2R	13380942	2R_13380942_INS [dm3] 2R_17493437_INS [dm6]	AA	CGC	2.641e^-4	0.979	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	14002133	3L_14002133_SNP [dm3] 3L_14009033_SNP [dm6]	T	G	2.641e^-4	0.979	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11406820	3R_11406820_SNP [dm3] 3R_15581098_SNP [dm6]	T	C	2.650e^-4	0.979	INTERGENIC
3R	12384609	3R_12384609_SNP [dm3] 3R_16558887_SNP [dm6]	A	G	2.654e^-4	0.979	INTRON CG42342
3R	27078864	3R_27078864_SNP [dm3] 3R_31253142_SNP [dm6]	T	A	2.656e^-4	0.979	NON_SYNONYMOUS_CODING mRpL32 UPSTREAM qless DOWNSTREAM CG1750	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13839291	3L_13839291_SNP [dm3] 3L_13846191_SNP [dm6]	C	T	2.669e^-4	0.979	UTR_5_PRIME Hml DOWNSTREAM Tsp68C
2R	3955020	2R_3955020_SNP [dm3] 2R_8067515_SNP [dm6]	C	T	2.677e^-4	0.979	UTR_5_PRIME CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3956137	2R_3956137_SNP [dm3] 2R_8068632_SNP [dm6]	C	G	2.677e^-4	0.979	UPSTREAM CG17977 & 1 other INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3956194	2R_3956194_SNP [dm3] 2R_8068689_SNP [dm6]	T	C	2.677e^-4	0.979	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3958119	2R_3958119_SNP [dm3] 2R_8070614_SNP [dm6]	A	T	2.677e^-4	0.979	INTRON lig
3R	2449286	3R_2449286_SNP [dm3] 3R_6623564_SNP [dm6]	G	A	2.678e^-4	0.979	INTERGENIC
3L	13829018	3L_13829018_SNP [dm3] 3L_13835918_SNP [dm6]	C	G	2.685e^-4	0.979	INTERGENIC
2R	16185924	2R_16185924_SNP [dm3] 2R_20298419_SNP [dm6]	C	T	2.685e^-4	0.979	INTERGENIC
2R	6741907	2R_6741907_SNP [dm3] 2R_10854402_SNP [dm6]	G	C	2.693e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	11195249	3L_11195249_SNP [dm3] 3L_11202149_SNP [dm6]	G	C	2.697e^-4	0.979	UTR_3_PRIME CG14141 INTRON Plod
3L	13828979	3L_13828979_SNP [dm3] 3L_13835879_SNP [dm6]	C	T	2.726e^-4	0.979	INTERGENIC
3L	1145165	3L_1145165_SNP [dm3] 3L_1145165_SNP [dm6]	A	C	2.739e^-4	0.979	INTRON bab2
X	13438182	X_13438182_SNP [dm3] X_13544149_SNP [dm6]	A	T	2.754e^-4	0.979	INTRON Cpr12A
X	3763687	X_3763687_SNP [dm3] X_3869654_SNP [dm6]	C	A	2.763e^-4	0.979	SPLICE_SITE_REGION yin UTR_5_PRIME CG2930 INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1425655	2R_1425655_SNP [dm3] 2R_5538150_SNP [dm6]	A	T	2.764e^-4	0.979	INTRON CG30438	transposable element FlyBase
3L	18142951	3L_18142951_SNP [dm3] 3L_18149851_SNP [dm6]	G	A	2.767e^-4	0.979	INTRON CG7330
X	3765095	X_3765095_SNP [dm3] X_3871062_SNP [dm6]	A	T	2.768e^-4	0.979	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	5697337	3L_5697337_MNP [dm3] 3L_5704237_MNP [dm6]	TAT	CCA	2.777e^-4	0.979	INTRON sif
3L	5697341	3L_5697341_MNP [dm3] 3L_5704241_MNP [dm6]	GTATA	TAGGT	2.777e^-4	0.979	INTRON sif
2R	6642513	2R_6642513_SNP [dm3] 2R_10755008_SNP [dm6]	G	C	2.777e^-4	0.979	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
3L	12727765	3L_12727765_SNP [dm3] 3L_12734665_SNP [dm6]	C	A	2.777e^-4	0.979	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15302128	2L_15302128_SNP [dm3] 2L_15302128_SNP [dm6]	A	C	2.777e^-4	0.979	INTERGENIC
2L	15302136	2L_15302136_SNP [dm3] 2L_15302136_SNP [dm6]	G	A	2.777e^-4	0.979	INTERGENIC
2L	17492023	2L_17492023_INS [dm3] 2L_17492023_INS [dm6]	C	CAC	2.780e^-4	0.979	UTR_5_PRIME qua INTRON qua
2R	4747458	2R_4747458_SNP [dm3] 2R_8859953_SNP [dm6]	T	G	2.783e^-4	0.979	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb mE1_TFBS_Trl
2L	7192249	2L_7192249_SNP [dm3] 2L_7192249_SNP [dm6]	C	T	2.808e^-4	0.979	INTRON CG4497	TF binding site mE1_TFBS_inv
X	13091054	X_13091054_SNP [dm3] X_13197021_SNP [dm6]	A	C	2.826e^-4	0.979	INTRON sno	TF binding site mE1_TFBS_sens
2R	1047107	2R_1047107_SNP [dm3] 2R_5159602_SNP [dm6]	A	G	2.826e^-4	0.979	INTERGENIC	transposable element FlyBase
3R	11813702	3R_11813702_SNP [dm3] 3R_15987980_SNP [dm6]	C	G	2.841e^-4	0.979	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26786874	3R_26786874_SNP [dm3] 3R_30961152_SNP [dm6]	T	G	2.844e^-4	0.979	NON_SYNONYMOUS_CODING CG15548
3R	14684443	3R_14684443_DEL [dm3] 3R_18858721_DEL [dm6]	CCAACCAAAAAAATC...	C	2.846e^-4	0.979	INTERGENIC
X	19614197	X_19614197_INS [dm3] X_19720164_INS [dm6]	T	TGTGT	2.853e^-4	0.979	INTRON CG12531
3L	11235268	3L_11235268_SNP [dm3] 3L_11242168_SNP [dm6]	G	C	2.859e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18221526	3L_18221526_SNP [dm3] 3L_18228426_SNP [dm6]	T	C	2.866e^-4	0.979	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1628376	2R_1628376_SNP [dm3] 2R_5740871_SNP [dm6]	G	T	2.869e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	1427271	2R_1427271_DEL [dm3] 2R_5539766_DEL [dm6]	GTG	AA	2.872e^-4	0.979	INTRON CG30438
3L	1316369	3L_1316369_SNP [dm3] 3L_1316369_SNP [dm6]	T	C	2.888e^-4	0.979	INTRON CG9153
3L	1318900	3L_1318900_SNP [dm3] 3L_1318900_SNP [dm6]	C	T	2.888e^-4	0.979	DOWNSTREAM CG9153 INTRON Myo61F
3L	1318905	3L_1318905_SNP [dm3] 3L_1318905_SNP [dm6]	T	C	2.888e^-4	0.979	DOWNSTREAM CG9153 INTRON Myo61F
X	475801	X_475801_SNP [dm3] X_581768_SNP [dm6]	G	A	2.888e^-4	0.979	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11171089	3L_11171089_SNP [dm3] 3L_11177989_SNP [dm6]	A	G	2.897e^-4	0.979	UTR_3_PRIME GlcAT-P
3L	5869808	3L_5869808_SNP [dm3] 3L_5876708_SNP [dm6]	A	G	2.907e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13842298	3L_13842298_SNP [dm3] 3L_13849198_SNP [dm6]	G	C	2.908e^-4	0.979	SYNONYMOUS_CODING Hml
2R	13002549	2R_13002549_SNP [dm3] 2R_17115044_SNP [dm6]	T	G	2.947e^-4	0.979	DOWNSTREAM CG15611 INTERGENIC
2R	13002552	2R_13002552_SNP [dm3] 2R_17115047_SNP [dm6]	G	A	2.947e^-4	0.979	DOWNSTREAM CG15611 INTERGENIC
3R	2467572	3R_2467572_SNP [dm3] 3R_6641850_SNP [dm6]	T	C	2.951e^-4	0.979	SPLICE_SITE_REGION CG31286 DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13380968	2R_13380968_SNP [dm3] 2R_17493463_SNP [dm6]	T	C	2.967e^-4	0.979	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	12559687	3R_12559687_SNP [dm3] 3R_16733965_SNP [dm6]	A	T	2.978e^-4	0.979	UTR_5_PRIME Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	1900528	3L_1900528_SNP [dm3] 3L_1900528_SNP [dm6]	A	G	2.990e^-4	0.979	UTR_3_PRIME CG1887 INTRON CG1887
3R	16986212	3R_16986212_SNP [dm3] 3R_21160490_SNP [dm6]	G	T	2.998e^-4	0.979	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
3L	13134131	3L_13134131_SNP [dm3] 3L_13141031_SNP [dm6]	T	C	2.999e^-4	0.979	INTERGENIC
3L	3945770	3L_3945770_SNP [dm3] 3L_3945770_SNP [dm6]	T	C	3.005e^-4	0.979	SYNONYMOUS_CODING CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11485870	2L_11485870_SNP [dm3] 2L_11485870_SNP [dm6]	A	T	3.012e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2210696	3L_2210696_SNP [dm3] 3L_2210696_SNP [dm6]	A	G	3.013e^-4	0.979	DOWNSTREAM CG15878 INTERGENIC
3R	12575128	3R_12575128_SNP [dm3] 3R_16749406_SNP [dm6]	C	G	3.020e^-4	0.979	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16731299	3L_16731299_SNP [dm3] 3L_16738199_SNP [dm6]	C	T	3.024e^-4	0.979	INTRON CG9701	TF binding site mE1_TFBS_cad
2R	7058313	2R_7058313_SNP [dm3] 2R_11170808_SNP [dm6]	C	A	3.024e^-4	0.979	INTRON shn & 1 other
3R	14686201	3R_14686201_SNP [dm3] 3R_18860479_SNP [dm6]	G	A	3.024e^-4	0.979	INTERGENIC
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	3.026e^-4	0.979	INTERGENIC
2L	15248285	2L_15248285_SNP [dm3] 2L_15248285_SNP [dm6]	A	G	3.038e^-4	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	11485882	2L_11485882_SNP [dm3] 2L_11485882_SNP [dm6]	A	G	3.057e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485897	2L_11485897_SNP [dm3] 2L_11485897_SNP [dm6]	C	T	3.057e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12591664	3L_12591664_SNP [dm3] 3L_12598564_SNP [dm6]	G	A	3.061e^-4	0.979	INTERGENIC
3L	12591666	3L_12591666_SNP [dm3] 3L_12598566_SNP [dm6]	A	T	3.061e^-4	0.979	INTERGENIC
3L	12591668	3L_12591668_SNP [dm3] 3L_12598568_SNP [dm6]	T	C	3.061e^-4	0.979	INTERGENIC
3L	12591671	3L_12591671_INS [dm3] 3L_12598571_INS [dm6]	A	AT	3.061e^-4	0.979	INTERGENIC
3L	12591726	3L_12591726_SNP [dm3] 3L_12598626_SNP [dm6]	A	T	3.061e^-4	0.979	INTERGENIC
X	12185990	X_12185990_SNP [dm3] X_12291957_SNP [dm6]	A	C	3.064e^-4	0.979	INTRON Ten-a
2R	6676622	2R_6676622_DEL [dm3] 2R_10789117_DEL [dm6]	ACAGCA	A	3.068e^-4	0.979	INTRON CG33144
X	3127319	X_3127319_SNP [dm3] X_3233286_SNP [dm6]	C	A	3.070e^-4	0.979	INTRON dnc
2L	13312155	2L_13312155_SNP [dm3] 2L_13312155_SNP [dm6]	A	G	3.072e^-4	0.979	INTRON CG43778
3R	17828479	3R_17828479_SNP [dm3] 3R_22002757_SNP [dm6]	T	A	3.080e^-4	0.979	INTRON Eip93F
3L	1900180	3L_1900180_SNP [dm3] 3L_1900180_SNP [dm6]	C	T	3.085e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
3L	1900185	3L_1900185_SNP [dm3] 3L_1900185_SNP [dm6]	C	T	3.085e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
2R	3955161	2R_3955161_SNP [dm3] 2R_8067656_SNP [dm6]	T	C	3.090e^-4	0.979	UPSTREAM lig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1900192	3L_1900192_SNP [dm3] 3L_1900192_SNP [dm6]	T	A	3.093e^-4	0.979	DOWNSTREAM CG1887 INTRON CG1887
3L	746516	3L_746516_SNP [dm3] 3L_746516_SNP [dm6]	G	A	3.119e^-4	0.979	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	746528	3L_746528_SNP [dm3] 3L_746528_SNP [dm6]	T	C	3.119e^-4	0.979	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12180702	X_12180702_SNP [dm3] X_12286669_SNP [dm6]	C	T	3.126e^-4	0.979	SYNONYMOUS_CODING Ten-a
2R	1746678	2R_1746678_SNP [dm3] 2R_5859173_SNP [dm6]	T	C	3.128e^-4	0.979	UTR_3_PRIME dpr12
3L	11628596	3L_11628596_SNP [dm3] 3L_11635496_SNP [dm6]	T	A	3.128e^-4	0.979	INTRON CG32091
3L	14042126	3L_14042126_SNP [dm3] 3L_14049026_SNP [dm6]	T	C	3.128e^-4	0.979	SPLICE_SITE_REGION blue INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14046366	3L_14046366_SNP [dm3] 3L_14053266_SNP [dm6]	G	T	3.128e^-4	0.979	START_GAINED CG43986 UTR_5_PRIME CG43986 UPSTREAM CG32138 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14048547	3L_14048547_SNP [dm3] 3L_14055447_SNP [dm6]	T	C	3.128e^-4	0.979	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14048630	3L_14048630_SNP [dm3] 3L_14055530_SNP [dm6]	T	A	3.128e^-4	0.979	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12575177	3R_12575177_SNP [dm3] 3R_16749455_SNP [dm6]	C	A	3.132e^-4	0.979	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	11315479	X_11315479_SNP [dm3] X_11421446_SNP [dm6]	A	T	3.134e^-4	0.979	INTERGENIC
X	11315495	X_11315495_INS [dm3] X_11421462_INS [dm6]	A	AGAACAGATAT...	3.134e^-4	0.979	INTERGENIC
2L	6956506	2L_6956506_SNP [dm3] 2L_6956506_SNP [dm6]	G	A	3.145e^-4	0.979	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	6469957	2R_6469957_SNP [dm3] 2R_10582452_SNP [dm6]	C	G	3.180e^-4	0.979	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3L	2894000	3L_2894000_SNP [dm3] 3L_2894000_SNP [dm6]	C	T	3.208e^-4	0.979	INTERGENIC
3R	14724823	3R_14724823_SNP [dm3] 3R_18899101_SNP [dm6]	A	G	3.220e^-4	0.979	NON_SYNONYMOUS_CODING CG14297 UPSTREAM Rh2	regulatory region REDfly_CRMs
3L	8413593	3L_8413593_SNP [dm3] 3L_8420493_SNP [dm6]	C	A	3.238e^-4	0.979	INTRON CG32354
3R	4825613	3R_4825613_SNP [dm3] 3R_8999891_SNP [dm6]	G	A	3.256e^-4	0.979	INTRON CG31100
3L	18142927	3L_18142927_SNP [dm3] 3L_18149827_SNP [dm6]	C	A	3.256e^-4	0.979	INTRON CG7330
X	19157811	X_19157811_SNP [dm3] X_19263778_SNP [dm6]	T	C	3.261e^-4	0.979	INTRON Vav	TF binding site BDTNP1_TFBS_dl
3R	25999629	3R_25999629_SNP [dm3] 3R_30173907_SNP [dm6]	G	A	3.263e^-4	0.979	INTRON Mlc2
3R	27281180	3R_27281180_SNP [dm3] 3R_31455458_SNP [dm6]	A	T	3.267e^-4	0.979	SPLICE_SITE_REGION Gprk2 INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	18626959	2L_18626959_SNP [dm3] 2L_18626959_SNP [dm6]	A	T	3.270e^-4	0.979	INTRON MESR3	TF binding site mE1_TFBS_Trl
3R	11751158	3R_11751158_SNP [dm3] 3R_15925436_SNP [dm6]	G	C	3.279e^-4	0.979	UPSTREAM CG34276 INTRON CG4221
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	3.279e^-4	0.979	UPSTREAM CG34276 INTRON CG4221
X	7067731	X_7067731_INS [dm3] X_7173698_INS [dm6]	A	ATCATCA	3.287e^-4	0.979	INTRON CG9650 & 1 other EXON CR44357
2R	6741949	2R_6741949_INS [dm3] 2R_10854444_INS [dm6]	A	ACATTATGCTTAAA...	3.288e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	13947080	3L_13947080_SNP [dm3] 3L_13953980_SNP [dm6]	G	A	3.291e^-4	0.979	INTRON CG32137
2R	1409958	2R_1409958_SNP [dm3] 2R_5522453_SNP [dm6]	G	A	3.292e^-4	0.979	INTRON CG30438	transposable element FlyBase
3L	872773	3L_872773_SNP [dm3] 3L_872773_SNP [dm6]	A	T	3.312e^-4	0.979	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	2468354	X_2468354_SNP [dm3] X_2574321_SNP [dm6]	C	A	3.332e^-4	0.979	INTRON Pdfr
X	7067765	X_7067765_SNP [dm3] X_7173732_SNP [dm6]	A	C	3.332e^-4	0.979	INTRON CG9650 & 1 other EXON CR44357
3L	13853007	3L_13853007_SNP [dm3] 3L_13859907_SNP [dm6]	A	G	3.340e^-4	0.979	SYNONYMOUS_CODING Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13853254	3L_13853254_SNP [dm3] 3L_13860154_SNP [dm6]	C	T	3.340e^-4	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
X	8901190	X_8901190_SNP [dm3] X_9007157_SNP [dm6]	A	G	3.341e^-4	0.979	INTRON rdgA & 1 other
3L	10533096	3L_10533096_SNP [dm3] 3L_10539996_SNP [dm6]	C	T	3.349e^-4	0.979	INTRON A2bp1
2L	3300190	2L_3300190_SNP [dm3] 2L_3300190_SNP [dm6]	C	T	3.358e^-4	0.979	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18236481	3L_18236481_SNP [dm3] 3L_18243381_SNP [dm6]	T	G	3.362e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15923397	2R_15923397_SNP [dm3] 2R_20035892_SNP [dm6]	A	G	3.383e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923447	2R_15923447_SNP [dm3] 2R_20035942_SNP [dm6]	T	C	3.383e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923456	2R_15923456_SNP [dm3] 2R_20035951_SNP [dm6]	A	T	3.383e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923516	2R_15923516_SNP [dm3] 2R_20036011_SNP [dm6]	G	A	3.383e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923524	2R_15923524_SNP [dm3] 2R_20036019_SNP [dm6]	A	C	3.383e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21138405	3R_21138405_DEL [dm3] 3R_25312683_DEL [dm6]	TAGCATTAGTGTCG...	T	3.384e^-4	0.979	INTRON CG31087
X	3758054	X_3758054_SNP [dm3] X_3864021_SNP [dm6]	A	G	3.388e^-4	0.979	NON_SYNONYMOUS_CODING yin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3762399	X_3762399_SNP [dm3] X_3868366_SNP [dm6]	T	G	3.410e^-4	0.979	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16897400	2R_16897400_SNP [dm3] 2R_21009895_SNP [dm6]	C	T	3.416e^-4	0.979	NON_SYNONYMOUS_CODING grau UPSTREAM CG30291	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16645316	3L_16645316_SNP [dm3] 3L_16652216_SNP [dm6]	G	A	3.417e^-4	0.979	INTRON Baldspot
3L	16646067	3L_16646067_SNP [dm3] 3L_16652967_SNP [dm6]	A	T	3.417e^-4	0.979	UPSTREAM snRNA:U12:73B INTRON Baldspot
3R	25063740	3R_25063740_SNP [dm3] 3R_29238018_SNP [dm6]	A	G	3.417e^-4	0.979	SYNONYMOUS_CODING CG11951 DOWNSTREAM CG31427	TF binding site mE1_TFBS_cad
2R	13814443	2R_13814443_SNP [dm3] 2R_17926938_SNP [dm6]	G	A	3.420e^-4	0.979	DOWNSTREAM Elk INTERGENIC
3L	15024881	3L_15024881_SNP [dm3] 3L_15031781_SNP [dm6]	T	C	3.426e^-4	0.979	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12406776	3L_12406776_SNP [dm3] 3L_12413676_SNP [dm6]	C	A	3.431e^-4	0.979	SYNONYMOUS_CODING CG32103
3L	1318899	3L_1318899_SNP [dm3] 3L_1318899_SNP [dm6]	T	C	3.437e^-4	0.979	DOWNSTREAM CG9153 INTRON Myo61F
3R	17352613	3R_17352613_SNP [dm3] 3R_21526891_SNP [dm6]	G	A	3.442e^-4	0.979	SYNONYMOUS_CODING CG7956 UTR_3_PRIME CG7956	TF binding site mE1_TFBS_cad
3R	17352673	3R_17352673_SNP [dm3] 3R_21526951_SNP [dm6]	C	T	3.442e^-4	0.979	UTR_3_PRIME CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3L	8592730	3L_8592730_SNP [dm3] 3L_8599630_SNP [dm6]	G	T	3.451e^-4	0.979	UTR_3_PRIME Nelf-E DOWNSTREAM CG43078
3L	8592793	3L_8592793_SNP [dm3] 3L_8599693_SNP [dm6]	G	A	3.451e^-4	0.979	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3L	12591604	3L_12591604_SNP [dm3] 3L_12598504_SNP [dm6]	G	A	3.458e^-4	0.979	INTERGENIC
3R	15071948	3R_15071948_SNP [dm3] 3R_19246226_SNP [dm6]	T	G	3.459e^-4	0.979	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13548048	3L_13548048_SNP [dm3] 3L_13554948_SNP [dm6]	T	A	3.474e^-4	0.979	INTRON bru-3
3L	18143016	3L_18143016_SNP [dm3] 3L_18149916_SNP [dm6]	C	G	3.483e^-4	0.979	INTRON CG7330
3L	18143017	3L_18143017_SNP [dm3] 3L_18149917_SNP [dm6]	A	T	3.483e^-4	0.979	INTRON CG7330
3L	18143019	3L_18143019_SNP [dm3] 3L_18149919_SNP [dm6]	A	C	3.483e^-4	0.979	INTRON CG7330
3L	18152624	3L_18152624_SNP [dm3] 3L_18159524_SNP [dm6]	A	G	3.484e^-4	0.979	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13002520	2R_13002520_SNP [dm3] 2R_17115015_SNP [dm6]	A	G	3.485e^-4	0.979	DOWNSTREAM CG15611 INTERGENIC
3L	2554557	3L_2554557_SNP [dm3] 3L_2554557_SNP [dm6]	G	A	3.501e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554562	3L_2554562_SNP [dm3] 3L_2554562_SNP [dm6]	T	C	3.501e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554661	3L_2554661_SNP [dm3] 3L_2554661_SNP [dm6]	C	G	3.501e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	13416034	3L_13416034_SNP [dm3] 3L_13422934_SNP [dm6]	T	C	3.537e^-4	0.979	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
2L	15302153	2L_15302153_SNP [dm3] 2L_15302153_SNP [dm6]	G	T	3.551e^-4	0.979	INTERGENIC
3L	14884062	3L_14884062_SNP [dm3] 3L_14890962_SNP [dm6]	G	A	3.567e^-4	0.979	UPSTREAM CR45398 INTERGENIC
2L	15302237	2L_15302237_SNP [dm3] 2L_15302237_SNP [dm6]	T	G	3.572e^-4	0.979	INTERGENIC
3L	12734760	3L_12734760_DEL [dm3] 3L_12741660_DEL [dm6]	TT	T	3.580e^-4	0.979	UPSTREAM CG32112 DOWNSTREAM Ptp69D INTERGENIC
2L	5242951	2L_5242951_SNP [dm3] 2L_5242951_SNP [dm6]	T	G	3.609e^-4	0.979	UPSTREAM tkv INTRON tkv EXON CR14033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14002440	3L_14002440_SNP [dm3] 3L_14009340_SNP [dm6]	T	C	3.612e^-4	0.979	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18151703	3L_18151703_SNP [dm3] 3L_18158603_SNP [dm6]	A	G	3.621e^-4	0.979	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4637268	3L_4637268_SNP [dm3] 3L_4637268_SNP [dm6]	T	C	3.624e^-4	0.979	UTR_3_PRIME axo INTRON axo
X	2468353	X_2468353_SNP [dm3] X_2574320_SNP [dm6]	T	C	3.632e^-4	0.979	INTRON Pdfr
3L	12591528	3L_12591528_SNP [dm3] 3L_12598428_SNP [dm6]	A	G	3.638e^-4	0.979	INTERGENIC
2R	10866282	2R_10866282_SNP [dm3] 2R_14978777_SNP [dm6]	C	A	3.638e^-4	0.979	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6741939	2R_6741939_SNP [dm3] 2R_10854434_SNP [dm6]	A	T	3.656e^-4	0.979	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3R	19013997	3R_19013997_SNP [dm3] 3R_23188275_SNP [dm6]	C	T	3.657e^-4	0.979	NON_SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13380977	2R_13380977_SNP [dm3] 2R_17493472_SNP [dm6]	C	T	3.660e^-4	0.979	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	4030046	3L_4030046_SNP [dm3] 3L_4030046_SNP [dm6]	A	C	3.686e^-4	0.979	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
2R	6470031	2R_6470031_SNP [dm3] 2R_10582526_SNP [dm6]	C	G	3.702e^-4	0.979	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2974874	3L_2974874_SNP [dm3] 3L_2974874_SNP [dm6]	T	C	3.728e^-4	0.979	DOWNSTREAM CR44530 INTERGENIC
3L	8696260	3L_8696260_MNP [dm3] 3L_8703160_MNP [dm6]	ATTTT	TCGCA	3.767e^-4	0.979	INTERGENIC
2R	13770742	2R_13770742_SNP [dm3] 2R_17883237_SNP [dm6]	A	G	3.790e^-4	0.979	UPSTREAM CG30110 INTRON Elk
3R	20573621	3R_20573621_SNP [dm3] 3R_24747899_SNP [dm6]	A	G	3.795e^-4	0.979	SYNONYMOUS_CODING tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	13873844	3L_13873844_SNP [dm3] 3L_13880744_SNP [dm6]	T	A	3.804e^-4	0.979	INTRON dysc & 1 other
2L	3731792	2L_3731792_SNP [dm3] 2L_3731792_SNP [dm6]	G	A	3.819e^-4	0.979	INTRON CG10019
3L	18142905	3L_18142905_SNP [dm3] 3L_18149805_SNP [dm6]	A	T	3.824e^-4	0.979	INTRON CG7330
3L	9865553	3L_9865553_SNP [dm3] 3L_9872453_SNP [dm6]	T	A	3.824e^-4	0.979	INTERGENIC
3L	17104173	3L_17104173_SNP [dm3] 3L_17111073_SNP [dm6]	T	G	3.833e^-4	0.979	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6835192	2L_6835192_SNP [dm3] 2L_6835192_SNP [dm6]	T	A	3.842e^-4	0.979	INTRON sens-2
3L	872800	3L_872800_SNP [dm3] 3L_872800_SNP [dm6]	T	C	3.849e^-4	0.979	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	872801	3L_872801_SNP [dm3] 3L_872801_SNP [dm6]	G	C	3.849e^-4	0.979	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18236505	3L_18236505_SNP [dm3] 3L_18243405_SNP [dm6]	A	T	3.872e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12180456	X_12180456_SNP [dm3] X_12286423_SNP [dm6]	G	A	3.878e^-4	0.979	SYNONYMOUS_CODING Ten-a
3L	2554647	3L_2554647_SNP [dm3] 3L_2554647_SNP [dm6]	A	C	3.890e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	17243478	3R_17243478_SNP [dm3] 3R_21417756_SNP [dm6]	C	A	3.892e^-4	0.979	INTRON lbl	TF binding site mE1_TFBS_cad
3R	17243483	3R_17243483_SNP [dm3] 3R_21417761_SNP [dm6]	A	T	3.892e^-4	0.979	INTRON lbl	TF binding site mE1_TFBS_cad
3R	15090727	3R_15090727_SNP [dm3] 3R_19265005_SNP [dm6]	G	T	3.905e^-4	0.979	INTERGENIC
3R	15090745	3R_15090745_SNP [dm3] 3R_19265023_SNP [dm6]	C	T	3.905e^-4	0.979	INTERGENIC
3R	15090771	3R_15090771_SNP [dm3] 3R_19265049_SNP [dm6]	G	T	3.905e^-4	0.979	INTERGENIC
3R	15090786	3R_15090786_SNP [dm3] 3R_19265064_SNP [dm6]	G	A	3.905e^-4	0.979	INTERGENIC
2R	1380484	2R_1380484_SNP [dm3] 2R_5492979_SNP [dm6]	A	T	3.909e^-4	0.979	INTRON CG30440
2L	6955128	2L_6955128_SNP [dm3] 2L_6955128_SNP [dm6]	G	T	3.933e^-4	0.979	NON_SYNONYMOUS_CODING CG13775 DOWNSTREAM SA
3L	14054078	3L_14054078_SNP [dm3] 3L_14060978_SNP [dm6]	G	C	3.946e^-4	0.979	INTRON CG32138
3L	18143352	3L_18143352_SNP [dm3] 3L_18150252_SNP [dm6]	C	A	3.947e^-4	0.979	INTRON CG7330
3L	17201776	3L_17201776_SNP [dm3] 3L_17208676_SNP [dm6]	A	T	3.962e^-4	0.979	INTRON Rbp6	TF binding site mE1_TFBS_chinmo
2R	4749821	2R_4749821_SNP [dm3] 2R_8862316_SNP [dm6]	T	C	3.964e^-4	0.979	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11207328	3R_11207328_SNP [dm3] 3R_15381606_SNP [dm6]	C	T	3.969e^-4	0.979	UTR_3_PRIME h-cup INTRON Rbp
3L	4100681	3L_4100681_DEL [dm3] 3L_4100681_DEL [dm6]	CTC	C	3.970e^-4	0.979	INTRON CG14995
2L	11485227	2L_11485227_SNP [dm3] 2L_11485227_SNP [dm6]	C	A	3.975e^-4	0.979	SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4759676	3L_4759676_DEL [dm3] 3L_4759676_DEL [dm6]	CC	C	3.988e^-4	0.979	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1900558	3L_1900558_SNP [dm3] 3L_1900558_SNP [dm6]	G	C	4.021e^-4	0.979	UTR_3_PRIME CG1887 INTRON CG1887
3R	3668597	3R_3668597_SNP [dm3] 3R_7842875_SNP [dm6]	C	T	4.024e^-4	0.979	INTRON CG34384
3R	3668601	3R_3668601_SNP [dm3] 3R_7842879_SNP [dm6]	A	C	4.024e^-4	0.979	INTRON CG34384
3R	26756746	3R_26756746_SNP [dm3] 3R_30931024_SNP [dm6]	A	C	4.027e^-4	0.979	DOWNSTREAM Ptx1 INTERGENIC
3L	10735580	3L_10735580_SNP [dm3] 3L_10742480_SNP [dm6]	A	T	4.037e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12591631	3L_12591631_SNP [dm3] 3L_12598531_SNP [dm6]	T	G	4.048e^-4	0.979	INTERGENIC
3L	12591635	3L_12591635_SNP [dm3] 3L_12598535_SNP [dm6]	T	G	4.048e^-4	0.979	INTERGENIC
3R	18927437	3R_18927437_SNP [dm3] 3R_23101715_SNP [dm6]	A	G	4.068e^-4	0.979	DOWNSTREAM CG6738 INTRON CG13830
3L	19239739	3L_19239739_SNP [dm3] 3L_19246639_SNP [dm6]	G	T	4.072e^-4	0.979	INTERGENIC
3R	12649752	3R_12649752_INS [dm3] 3R_16824030_INS [dm6]	G	GC	4.087e^-4	0.979	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	12652181	3R_12652181_SNP [dm3] 3R_16826459_SNP [dm6]	C	T	4.087e^-4	0.979	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3977897	3L_3977897_SNP [dm3] 3L_3977897_SNP [dm6]	G	A	4.115e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18148033	3R_18148033_SNP [dm3] 3R_22322311_SNP [dm6]	A	G	4.115e^-4	0.979	INTRON CG34377
2R	4713793	2R_4713793_INS [dm3] 2R_8826288_INS [dm6]	A	AA	4.128e^-4	0.979	UPSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18887951	2R_18887951_SNP [dm3] 2R_23000428_SNP [dm6]	G	A	4.145e^-4	0.979	INTRON twi
2R	6215411	2R_6215411_SNP [dm3] 2R_10327906_SNP [dm6]	A	T	4.145e^-4	0.979	INTRON CG42732
3L	13843556	3L_13843556_SNP [dm3] 3L_13850456_SNP [dm6]	C	T	4.148e^-4	0.979	SYNONYMOUS_CODING Hml
3L	13843703	3L_13843703_SNP [dm3] 3L_13850603_SNP [dm6]	C	T	4.148e^-4	0.979	SYNONYMOUS_CODING Hml
3L	13844946	3L_13844946_SNP [dm3] 3L_13851846_SNP [dm6]	G	C	4.148e^-4	0.979	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
X	8265725	X_8265725_SNP [dm3] X_8371692_SNP [dm6]	C	A	4.150e^-4	0.979	INTERGENIC
3L	9274923	3L_9274923_DEL [dm3] 3L_9281823_DEL [dm6]	ACAGTGAGAGAATCA...	A	4.151e^-4	0.979	INTRON GluRIB
2R	12541680	2R_12541680_SNP [dm3] 2R_16654175_SNP [dm6]	C	T	4.160e^-4	0.979	SYNONYMOUS_CODING Nach
3L	14386061	3L_14386061_SNP [dm3] 3L_14392961_SNP [dm6]	G	A	4.174e^-4	0.979	INTERGENIC
2R	1428846	2R_1428846_SNP [dm3] 2R_5541341_SNP [dm6]	T	G	4.198e^-4	0.979	INTRON CG30438
2L	10251255	2L_10251255_SNP [dm3] 2L_10251255_SNP [dm6]	T	C	4.205e^-4	0.979	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6742572	2R_6742572_SNP [dm3] 2R_10855067_SNP [dm6]	G	A	4.210e^-4	0.979	UPSTREAM CG30015 DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	26030154	3R_26030154_SNP [dm3] 3R_30204432_SNP [dm6]	A	G	4.220e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5976776	3L_5976776_SNP [dm3] 3L_5983676_SNP [dm6]	A	G	4.226e^-4	0.979	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	3954623	2R_3954623_DEL [dm3] 2R_8067118_DEL [dm6]	TAACTCACCAAAAATAGTTT...	T	4.253e^-4	0.979	SPLICE_SITE_DONOR CG17977 CODON_DELETION CG17977 SPLICE_SITE_REGION CG17977 UPSTREAM lig INTRON CG17977	TF binding site BDTNP1_TFBS_dl
3L	18163959	3L_18163959_SNP [dm3] 3L_18170859_SNP [dm6]	C	T	4.271e^-4	0.979	INTRON W
X	8901200	X_8901200_SNP [dm3] X_9007167_SNP [dm6]	A	C	4.275e^-4	0.979	INTRON rdgA & 1 other
X	8901226	X_8901226_INS [dm3] X_9007193_INS [dm6]	G	GCAAA	4.275e^-4	0.979	INTRON rdgA & 1 other
X	8901229	X_8901229_INS [dm3] X_9007196_INS [dm6]	T	TCA	4.275e^-4	0.979	INTRON rdgA & 1 other
X	8901236	X_8901236_DEL [dm3] X_9007203_DEL [dm6]	AA	A	4.275e^-4	0.979	INTRON rdgA & 1 other
X	8901245	X_8901245_SNP [dm3] X_9007212_SNP [dm6]	T	A	4.275e^-4	0.979	INTRON rdgA & 1 other
3L	11195231	3L_11195231_SNP [dm3] 3L_11202131_SNP [dm6]	A	G	4.278e^-4	0.979	UTR_3_PRIME CG14141 INTRON Plod
3R	18146469	3R_18146469_SNP [dm3] 3R_22320747_SNP [dm6]	T	G	4.279e^-4	0.979	INTRON CG34377
3L	2554567	3L_2554567_SNP [dm3] 3L_2554567_SNP [dm6]	C	A	4.282e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3R	15072006	3R_15072006_SNP [dm3] 3R_19246284_SNP [dm6]	A	T	4.289e^-4	0.979	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6835289	2L_6835289_SNP [dm3] 2L_6835289_SNP [dm6]	T	A	4.301e^-4	0.979	INTRON sens-2
X	9236860	X_9236860_SNP [dm3] X_9342827_SNP [dm6]	A	G	4.321e^-4	0.979	INTRON CG34449
2R	6469974	2R_6469974_SNP [dm3] 2R_10582469_SNP [dm6]	G	C	4.321e^-4	0.979	INTRON psq	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	14722198	2L_14722198_INS [dm3] 2L_14722198_INS [dm6]	T	TT	4.326e^-4	0.979	INTERGENIC
2R	16726980	2R_16726980_SNP [dm3] 2R_20839475_SNP [dm6]	T	C	4.332e^-4	0.979	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8222578	3L_8222578_SNP [dm3] 3L_8229478_SNP [dm6]	A	G	4.344e^-4	0.979	INTRON eIF4E-3
3R	6112695	3R_6112695_SNP [dm3] 3R_10286973_SNP [dm6]	G	T	4.349e^-4	0.979	INTRON CG43143
3L	2554560	3L_2554560_SNP [dm3] 3L_2554560_SNP [dm6]	A	G	4.351e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
X	3463602	X_3463602_SNP [dm3] X_3569569_SNP [dm6]	A	G	4.355e^-4	0.979	SYNONYMOUS_CODING ppk8 INTRON ppk8 & 1 other
3L	4970164	3L_4970164_SNP [dm3] 3L_4970164_SNP [dm6]	C	T	4.358e^-4	0.979	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10575075	2L_10575075_DEL [dm3] 2L_10575075_DEL [dm6]	TT	T	4.365e^-4	0.979	DOWNSTREAM w-cup INTRON Trim9
2R	1382355	2R_1382355_DEL [dm3] 2R_5494850_DEL [dm6]	TTAT	T	4.388e^-4	0.979	CODON_DELETION CG30440
3R	6628697	3R_6628697_SNP [dm3] 3R_10802975_SNP [dm6]	T	C	4.390e^-4	0.979	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
3L	14882145	3L_14882145_SNP [dm3] 3L_14889045_SNP [dm6]	C	T	4.401e^-4	0.979	INTERGENIC
3R	19895991	3R_19895991_SNP [dm3] 3R_24070269_SNP [dm6]	T	C	4.405e^-4	0.979	INTRON 4EHP
3R	2464954	3R_2464954_SNP [dm3] 3R_6639232_SNP [dm6]	G	A	4.411e^-4	0.979	INTERGENIC
3R	9773020	3R_9773020_SNP [dm3] 3R_13947298_SNP [dm6]	C	A	4.422e^-4	0.979	INTERGENIC
2L	10308691	2L_10308691_SNP [dm3] 2L_10308691_SNP [dm6]	G	A	4.431e^-4	0.979	SYNONYMOUS_CODING Cdk5alpha DOWNSTREAM CG4968
3L	15338525	3L_15338525_SNP [dm3] 3L_15345425_SNP [dm6]	A	G	4.431e^-4	0.979	INTERGENIC
3L	3978005	3L_3978005_DEL [dm3] 3L_3978005_DEL [dm6]	TCGTCCTGGCATCAGCAAAT...	T	4.431e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3978195	3L_3978195_SNP [dm3] 3L_3978195_SNP [dm6]	G	T	4.431e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3978215	3L_3978215_SNP [dm3] 3L_3978215_SNP [dm6]	T	C	4.431e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11128698	3R_11128698_SNP [dm3] 3R_15302976_SNP [dm6]	C	A	4.431e^-4	0.979	INTRON Tm1
3R	11129167	3R_11129167_SNP [dm3] 3R_15303445_SNP [dm6]	G	A	4.431e^-4	0.979	INTRON Tm1
3R	17353385	3R_17353385_SNP [dm3] 3R_21527663_SNP [dm6]	T	C	4.431e^-4	0.979	UTR_3_PRIME CG7956
3R	9408410	3R_9408410_SNP [dm3] 3R_13582688_SNP [dm6]	T	A	4.431e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_inv
X	19614203	X_19614203_SNP [dm3] X_19720170_SNP [dm6]	C	G	4.431e^-4	0.979	INTRON CG12531
X	8771407	X_8771407_SNP [dm3] X_8877374_SNP [dm6]	T	A	4.431e^-4	0.979	UPSTREAM Moe INTRON Moe
2R	1756514	2R_1756514_INS [dm3] 2R_5869009_INS [dm6]	T	TTTTGCT	4.431e^-4	0.979	INTERGENIC
X	12179934	X_12179934_SNP [dm3] X_12285901_SNP [dm6]	T	C	4.438e^-4	0.979	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3L	13855072	3L_13855072_SNP [dm3] 3L_13861972_SNP [dm6]	G	C	4.440e^-4	0.979	SYNONYMOUS_CODING CG8745
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	4.441e^-4	0.979	INTERGENIC
2R	1416716	2R_1416716_SNP [dm3] 2R_5529211_SNP [dm6]	A	T	4.441e^-4	0.979	INTRON CG30438
3L	13839631	3L_13839631_SNP [dm3] 3L_13846531_SNP [dm6]	G	A	4.449e^-4	0.979	INTRON Hml
3L	2609852	3L_2609852_DEL [dm3] 3L_2609852_DEL [dm6]	TCTACAGAACTTT...	T	4.463e^-4	0.979	UTR_3_PRIME Pxn INTRON Pxn
X	3759797	X_3759797_SNP [dm3] X_3865764_SNP [dm6]	C	T	4.463e^-4	0.979	INTRON yin
2R	4712150	2R_4712150_SNP [dm3] 2R_8824645_SNP [dm6]	G	A	4.472e^-4	0.979	INTRON sns
X	17676978	X_17676978_SNP [dm3] X_17782945_SNP [dm6]	T	C	4.476e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17676981	X_17676981_SNP [dm3] X_17782948_SNP [dm6]	C	T	4.476e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3926865	2L_3926865_SNP [dm3] 2L_3926865_SNP [dm6]	T	G	4.484e^-4	0.979	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7586060	3R_7586060_SNP [dm3] 3R_11760338_SNP [dm6]	G	A	4.497e^-4	0.979	UPSTREAM Lk6 INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	13376956	3L_13376956_SNP [dm3] 3L_13383856_SNP [dm6]	C	A	4.507e^-4	0.979	NON_SYNONYMOUS_CODING ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	15635536	3L_15635536_SNP [dm3] 3L_15642436_SNP [dm6]	T	A	4.508e^-4	0.979	INTRON comm3
2R	4077636	2R_4077636_SNP [dm3] 2R_8190131_SNP [dm6]	C	A	4.512e^-4	0.979	INTRON LRP1
X	8901175	X_8901175_DEL [dm3] X_9007142_DEL [dm6]	CAACAAA	G	4.524e^-4	0.979	INTRON rdgA & 1 other
3L	3280619	3L_3280619_SNP [dm3] 3L_3280619_SNP [dm6]	A	T	4.524e^-4	0.979	NON_SYNONYMOUS_CODING CG12017
3L	13873953	3L_13873953_SNP [dm3] 3L_13880853_SNP [dm6]	C	A	4.539e^-4	0.979	UPSTREAM CG13737 INTRON dysc & 1 other
2L	16473339	2L_16473339_SNP [dm3] 2L_16473339_SNP [dm6]	G	A	4.549e^-4	0.979	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3R	20699174	3R_20699174_SNP [dm3] 3R_24873452_SNP [dm6]	T	C	4.556e^-4	0.979	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
3R	25672660	3R_25672660_SNP [dm3] 3R_29846938_SNP [dm6]	T	C	4.588e^-4	0.979	INTRON Cad99C
2R	15838836	2R_15838836_SNP [dm3] 2R_19951331_SNP [dm6]	G	C	4.597e^-4	0.979	UPSTREAM CG10822 INTERGENIC
3L	13450433	3L_13450433_SNP [dm3] 3L_13457333_SNP [dm6]	C	T	4.626e^-4	0.979	UPSTREAM CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
3L	13870098	3L_13870098_SNP [dm3] 3L_13876998_SNP [dm6]	A	C	4.633e^-4	0.979	INTRON dysc
3L	18236484	3L_18236484_SNP [dm3] 3L_18243384_SNP [dm6]	T	G	4.645e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1277481	3L_1277481_SNP [dm3] 3L_1277481_SNP [dm6]	C	T	4.646e^-4	0.979	INTRON CG32333
3L	1278516	3L_1278516_SNP [dm3] 3L_1278516_SNP [dm6]	C	G	4.646e^-4	0.979	INTRON CG32333
3R	26261596	3R_26261596_SNP [dm3] 3R_30435874_SNP [dm6]	G	T	4.649e^-4	0.979	SPLICE_SITE_REGION CG15537 DOWNSTREAM CG15534 INTRON CG15537
2L	10251288	2L_10251288_SNP [dm3] 2L_10251288_SNP [dm6]	T	C	4.662e^-4	0.979	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13438179	X_13438179_SNP [dm3] X_13544146_SNP [dm6]	A	G	4.679e^-4	0.979	INTRON Cpr12A
3L	13839371	3L_13839371_SNP [dm3] 3L_13846271_SNP [dm6]	A	G	4.693e^-4	0.979	NON_SYNONYMOUS_CODING Hml DOWNSTREAM Tsp68C
3L	3978099	3L_3978099_SNP [dm3] 3L_3978099_SNP [dm6]	T	C	4.695e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14706448	2R_14706448_INS [dm3] 2R_18818943_INS [dm6]	C	CA	4.715e^-4	0.979	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4446882	2R_4446882_SNP [dm3] 2R_8559377_SNP [dm6]	T	C	4.719e^-4	0.979	UPSTREAM CR45308 INTERGENIC
X	11677709	X_11677709_SNP [dm3] X_11783676_SNP [dm6]	T	G	4.719e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13797555	2R_13797555_SNP [dm3] 2R_17910050_SNP [dm6]	A	G	4.723e^-4	0.979	INTRON Elk
3L	8455459	3L_8455459_SNP [dm3] 3L_8462359_SNP [dm6]	A	T	4.729e^-4	0.979	INTRON Gug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11677674	X_11677674_SNP [dm3] X_11783641_SNP [dm6]	A	T	4.733e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4825488	3R_4825488_SNP [dm3] 3R_8999766_SNP [dm6]	G	C	4.734e^-4	0.979	INTRON CG31100
2R	6737616	2R_6737616_SNP [dm3] 2R_10850111_SNP [dm6]	T	C	4.742e^-4	0.979	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	2444601	3R_2444601_SNP [dm3] 3R_6618879_SNP [dm6]	C	G	4.746e^-4	0.979	INTERGENIC
2R	1037767	2R_1037767_SNP [dm3] 2R_5150262_SNP [dm6]	T	C	4.785e^-4	0.979	INTRON Atf6
3L	15357208	3L_15357208_SNP [dm3] 3L_15364108_SNP [dm6]	C	T	4.814e^-4	0.979	INTERGENIC
3L	11365439	3L_11365439_SNP [dm3] 3L_11372339_SNP [dm6]	A	T	4.814e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	15090655	3R_15090655_SNP [dm3] 3R_19264933_SNP [dm6]	G	A	4.831e^-4	0.979	INTERGENIC
2L	13896683	2L_13896683_SNP [dm3] 2L_13896683_SNP [dm6]	C	T	4.835e^-4	0.979	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
3R	3832868	3R_3832868_SNP [dm3] 3R_8007146_SNP [dm6]	T	G	4.838e^-4	0.979	INTRON CG2767
2L	11945519	2L_11945519_SNP [dm3] 2L_11945519_SNP [dm6]	T	C	4.840e^-4	0.979	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2469667	3R_2469667_SNP [dm3] 3R_6643945_SNP [dm6]	A	G	4.853e^-4	0.979	SYNONYMOUS_CODING CG1315 DOWNSTREAM CG31286	TF binding site mE1_TFBS_HSA
2R	1755571	2R_1755571_SNP [dm3] 2R_5868066_SNP [dm6]	G	A	4.871e^-4	0.979	INTERGENIC
3R	18146475	3R_18146475_SNP [dm3] 3R_22320753_SNP [dm6]	A	T	4.903e^-4	0.979	INTRON CG34377
3R	26739149	3R_26739149_SNP [dm3] 3R_30913427_SNP [dm6]	A	G	4.907e^-4	0.979	UTR_5_PRIME Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	15938914	2R_15938914_SNP [dm3] 2R_20051409_SNP [dm6]	G	T	4.914e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21484674	3R_21484674_SNP [dm3] 3R_25658952_SNP [dm6]	A	C	4.917e^-4	0.979	INTRON Tnks	TF binding site mE1_TFBS_inv
2R	4711472	2R_4711472_SNP [dm3] 2R_8823967_SNP [dm6]	C	T	4.923e^-4	0.979	SYNONYMOUS_CODING sns
2R	13044470	2R_13044470_SNP [dm3] 2R_17156965_SNP [dm6]	A	C	4.926e^-4	0.979	UTR_3_PRIME CG17290 & 1 other
3L	12591703	3L_12591703_SNP [dm3] 3L_12598603_SNP [dm6]	C	T	4.961e^-4	0.979	INTERGENIC
3L	12591731	3L_12591731_SNP [dm3] 3L_12598631_SNP [dm6]	T	A	4.961e^-4	0.979	INTERGENIC
3R	3668613	3R_3668613_INS [dm3] 3R_7842891_INS [dm6]	A	AA	4.963e^-4	0.979	INTRON CG34384
2L	11485907	2L_11485907_DEL [dm3] 2L_11485907_DEL [dm6]	AA	C	4.984e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6629391	X_6629391_SNP [dm3] X_6735358_SNP [dm6]	T	C	4.995e^-4	0.979	INTRON CG3168 & 1 other
2L	3926659	2L_3926659_SNP [dm3] 2L_3926659_SNP [dm6]	C	T	5.011e^-4	0.979	INTRON fred	TF binding site mE1_TFBS_bab1
3R	25063700	3R_25063700_SNP [dm3] 3R_29237978_SNP [dm6]	G	A	5.015e^-4	0.979	NON_SYNONYMOUS_CODING CG11951 DOWNSTREAM CG31427	TF binding site mE1_TFBS_cad
2R	1739485	2R_1739485_SNP [dm3] 2R_5851980_SNP [dm6]	T	A	5.048e^-4	0.979	INTRON dpr12
3R	15090749	3R_15090749_SNP [dm3] 3R_19265027_SNP [dm6]	A	C	5.063e^-4	0.979	INTERGENIC
2L	13063896	2L_13063896_SNP [dm3] 2L_13063896_SNP [dm6]	A	C	5.063e^-4	0.979	INTERGENIC
2L	13063898	2L_13063898_SNP [dm3] 2L_13063898_SNP [dm6]	A	T	5.063e^-4	0.979	INTERGENIC
3R	22900512	3R_22900512_SNP [dm3] 3R_27074790_SNP [dm6]	C	T	5.075e^-4	0.979	INTERGENIC
3L	13864425	3L_13864425_SNP [dm3] 3L_13871325_SNP [dm6]	T	A	5.080e^-4	0.979	UTR_3_PRIME dysc
3L	13864776	3L_13864776_SNP [dm3] 3L_13871676_SNP [dm6]	A	T	5.080e^-4	0.979	UTR_3_PRIME dysc
3R	980090	3R_980090_SNP [dm3] 3R_5154368_SNP [dm6]	G	A	5.122e^-4	0.979	INTRON dpr16
3L	13710256	3L_13710256_SNP [dm3] 3L_13717156_SNP [dm6]	G	A	5.125e^-4	0.979	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11461101	2L_11461101_INS [dm3] 2L_11461101_INS [dm6]	T	TT	5.134e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1755750	2R_1755750_SNP [dm3] 2R_5868245_SNP [dm6]	A	T	5.144e^-4	0.979	INTERGENIC
3L	6546181	3L_6546181_SNP [dm3] 3L_6553081_SNP [dm6]	T	A	5.196e^-4	0.979	INTRON CG18769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2465762	3R_2465762_DEL [dm3] 3R_6640040_DEL [dm6]	TTATT	A	5.234e^-4	0.979	INTERGENIC
2L	16695263	2L_16695263_SNP [dm3] 2L_16695263_SNP [dm6]	T	A	5.254e^-4	0.979	UPSTREAM grp INTRON grp
3R	21339069	3R_21339069_SNP [dm3] 3R_25513347_SNP [dm6]	A	G	5.256e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18625697	2L_18625697_SNP [dm3] 2L_18625697_SNP [dm6]	A	G	5.260e^-4	0.979	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21852049	2L_21852049_SNP [dm3] 2L_21852049_SNP [dm6]	A	G	5.269e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13415946	3L_13415946_SNP [dm3] 3L_13422846_SNP [dm6]	G	C	5.271e^-4	0.979	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
3L	2787522	3L_2787522_SNP [dm3] 3L_2787522_SNP [dm6]	G	T	5.277e^-4	0.979	UTR_3_PRIME CG43444	TF binding site mE1_TFBS_HSA
3L	2894211	3L_2894211_SNP [dm3] 3L_2894211_SNP [dm6]	A	C	5.285e^-4	0.979	UPSTREAM Shab INTERGENIC
2R	1753332	2R_1753332_SNP [dm3] 2R_5865827_SNP [dm6]	A	T	5.291e^-4	0.979	INTERGENIC
2L	21852072	2L_21852072_SNP [dm3] 2L_21852072_SNP [dm6]	A	G	5.310e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10320668	2L_10320668_SNP [dm3] 2L_10320668_SNP [dm6]	A	C	5.313e^-4	0.979	INTRON CG5381
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	5.319e^-4	0.979	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
2R	1069824	2R_1069824_SNP [dm3] 2R_5182319_SNP [dm6]	T	C	5.329e^-4	0.979	INTRON Nipped-A	transposable element FlyBase
2R	9867385	2R_9867385_SNP [dm3] 2R_13979880_SNP [dm6]	A	G	5.330e^-4	0.979	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6152124	2R_6152124_INS [dm3] 2R_10264619_INS [dm6]	T	TAAAT	5.335e^-4	0.979	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25063368	3R_25063368_SNP [dm3] 3R_29237646_SNP [dm6]	A	G	5.342e^-4	0.979	INTRON CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11617100	3L_11617100_SNP [dm3] 3L_11624000_SNP [dm6]	G	A	5.368e^-4	0.979	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	11618460	3L_11618460_SNP [dm3] 3L_11625360_SNP [dm6]	T	A	5.368e^-4	0.979	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11622036	3L_11622036_SNP [dm3] 3L_11628936_SNP [dm6]	C	G	5.368e^-4	0.979	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_chinmo
3L	11624280	3L_11624280_SNP [dm3] 3L_11631180_SNP [dm6]	C	A	5.368e^-4	0.979	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3L	11626407	3L_11626407_SNP [dm3] 3L_11633307_SNP [dm6]	A	G	5.368e^-4	0.979	UPSTREAM CR45158 INTRON CG32091
3L	11626430	3L_11626430_SNP [dm3] 3L_11633330_SNP [dm6]	A	C	5.368e^-4	0.979	UPSTREAM CR45158 INTRON CG32091
2L	7872977	2L_7872977_SNP [dm3] 2L_7872977_SNP [dm6]	G	T	5.379e^-4	0.979	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2L	2323474	2L_2323474_SNP [dm3] 2L_2323474_SNP [dm6]	G	C	5.408e^-4	0.979	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3R	7600732	3R_7600732_SNP [dm3] 3R_11775010_SNP [dm6]	T	C	5.419e^-4	0.979	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7605176	3R_7605176_SNP [dm3] 3R_11779454_SNP [dm6]	C	A	5.419e^-4	0.979	UPSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_ttk
X	18091785	X_18091785_SNP [dm3] X_18197752_SNP [dm6]	G	A	5.428e^-4	0.979	INTRON Frq2	TF binding site mE1_TFBS_chinmo
2R	1402179	2R_1402179_SNP [dm3] 2R_5514674_SNP [dm6]	A	G	5.447e^-4	0.979	INTRON CG30438	transposable element FlyBase
2L	16620101	2L_16620101_DEL [dm3] 2L_16620101_DEL [dm6]	TTTTTA	T	5.448e^-4	0.979	INTRON CG42389
2L	1496625	2L_1496625_SNP [dm3] 2L_1496625_SNP [dm6]	G	T	5.459e^-4	0.979	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2R	5591493	2R_5591493_SNP [dm3] 2R_9703988_SNP [dm6]	C	T	5.461e^-4	0.979	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10932837	3L_10932837_SNP [dm3] 3L_10939737_SNP [dm6]	T	A	5.462e^-4	0.979	INTERGENIC
3L	2711077	3L_2711077_SNP [dm3] 3L_2711077_SNP [dm6]	A	T	5.470e^-4	0.979	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18151701	3L_18151701_SNP [dm3] 3L_18158601_SNP [dm6]	T	G	5.482e^-4	0.979	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12465002	2R_12465002_DEL [dm3] 2R_16577497_DEL [dm6]	GG	G	5.487e^-4	0.979	UPSTREAM CG8317 INTERGENIC
X	4068420	X_4068420_SNP [dm3] X_4174387_SNP [dm6]	A	G	5.491e^-4	0.979	INTRON Fas2
2R	4773319	2R_4773319_SNP [dm3] 2R_8885814_SNP [dm6]	C	T	5.491e^-4	0.979	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2465138	3R_2465138_SNP [dm3] 3R_6639416_SNP [dm6]	G	A	5.494e^-4	0.979	INTERGENIC
2R	8925234	2R_8925234_SNP [dm3] 2R_13037729_SNP [dm6]	G	C	5.500e^-4	0.979	INTERGENIC
2L	16366209	2L_16366209_SNP [dm3] 2L_16366209_SNP [dm6]	G	A	5.511e^-4	0.979	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1453497	2L_1453497_SNP [dm3] 2L_1453497_SNP [dm6]	T	C	5.523e^-4	0.979	INTERGENIC
3L	5976770	3L_5976770_SNP [dm3] 3L_5983670_SNP [dm6]	C	G	5.540e^-4	0.979	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13829028	3L_13829028_SNP [dm3] 3L_13835928_SNP [dm6]	A	T	5.540e^-4	0.979	INTERGENIC
3L	11365311	3L_11365311_SNP [dm3] 3L_11372211_SNP [dm6]	T	C	5.553e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cnc
X	20028038	X_20028038_SNP [dm3] X_20134005_SNP [dm6]	G	C	5.559e^-4	0.979	NON_SYNONYMOUS_CODING CG15322
3L	18143035	3L_18143035_SNP [dm3] 3L_18149935_SNP [dm6]	C	T	5.561e^-4	0.979	INTRON CG7330
3L	12406379	3L_12406379_SNP [dm3] 3L_12413279_SNP [dm6]	A	C	5.565e^-4	0.979	INTRON CG32103
3L	8811881	3L_8811881_SNP [dm3] 3L_8818781_SNP [dm6]	A	G	5.597e^-4	0.979	INTERGENIC
2L	1023827	2L_1023827_SNP [dm3] 2L_1023827_SNP [dm6]	T	A	5.597e^-4	0.979	INTRON IA-2
X	12175925	X_12175925_SNP [dm3] X_12281892_SNP [dm6]	G	T	5.609e^-4	0.979	INTRON Ten-a
X	3295798	X_3295798_SNP [dm3] X_3401765_SNP [dm6]	A	G	5.610e^-4	0.979	INTRON CR44999 & 1 other
X	16010492	X_16010492_SNP [dm3] X_16116459_SNP [dm6]	T	A	5.632e^-4	0.979	INTERGENIC
3L	11177615	3L_11177615_SNP [dm3] 3L_11184515_SNP [dm6]	A	C	5.648e^-4	0.979	INTRON GlcAT-P
3L	14043352	3L_14043352_SNP [dm3] 3L_14050252_SNP [dm6]	C	T	5.650e^-4	0.979	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13816040	3L_13816040_SNP [dm3] 3L_13822940_SNP [dm6]	T	C	5.650e^-4	0.979	INTERGENIC
2L	9422088	2L_9422088_SNP [dm3] 2L_9422088_SNP [dm6]	A	G	5.667e^-4	0.979	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13870018	3L_13870018_SNP [dm3] 3L_13876918_SNP [dm6]	A	G	5.676e^-4	0.979	INTRON dysc
3L	13870094	3L_13870094_SNP [dm3] 3L_13876994_SNP [dm6]	C	A	5.676e^-4	0.979	INTRON dysc
2R	15938815	2R_15938815_SNP [dm3] 2R_20051310_SNP [dm6]	C	T	5.684e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1724693	2L_1724693_DEL [dm3] 2L_1724693_DEL [dm6]	GCCT	AG	5.687e^-4	0.979	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5078898	3L_5078898_SNP [dm3] 3L_5078898_SNP [dm6]	G	A	5.699e^-4	0.979	UTR_5_PRIME Con
3L	18142796	3L_18142796_SNP [dm3] 3L_18149696_SNP [dm6]	G	A	5.702e^-4	0.979	INTRON CG7330
2L	5419297	2L_5419297_INS [dm3] 2L_5419297_INS [dm6]	T	TCT	5.711e^-4	0.979	INTERGENIC
X	3080656	X_3080656_INS [dm3] X_3186623_INS [dm6]	C	CC	5.711e^-4	0.979	INTRON dnc
2R	15844029	2R_15844029_SNP [dm3] 2R_19956524_SNP [dm6]	T	C	5.714e^-4	0.979	NON_SYNONYMOUS_CODING CG44623
3L	18151706	3L_18151706_SNP [dm3] 3L_18158606_SNP [dm6]	G	T	5.723e^-4	0.979	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2475785	X_2475785_SNP [dm3] X_2581752_SNP [dm6]	A	G	5.725e^-4	0.979	UPSTREAM CG13759 INTRON CG13759
2R	1746835	2R_1746835_SNP [dm3] 2R_5859330_SNP [dm6]	G	A	5.727e^-4	0.979	UTR_3_PRIME dpr12
3L	4601264	3L_4601264_DEL [dm3] 3L_4601264_DEL [dm6]	ATAG	A	5.733e^-4	0.979	INTRON Src64B
3L	18139912	3L_18139912_SNP [dm3] 3L_18146812_SNP [dm6]	T	A	5.733e^-4	0.979	INTERGENIC
3L	16407287	3L_16407287_SNP [dm3] 3L_16414187_SNP [dm6]	G	C	5.754e^-4	0.979	SYNONYMOUS_CODING TMS1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19708910	2R_19708910_SNP [dm3] 2R_23821387_SNP [dm6]	A	G	5.766e^-4	0.979	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	6502377	2L_6502377_SNP [dm3] 2L_6502377_SNP [dm6]	T	A	5.770e^-4	0.979	INTRON CG31637
3R	2497952	3R_2497952_SNP [dm3] 3R_6672230_SNP [dm6]	G	A	5.777e^-4	0.979	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	12641884	2L_12641884_SNP [dm3] 2L_12641884_SNP [dm6]	C	T	5.815e^-4	0.979	INTRON Ref2
3R	17224149	3R_17224149_SNP [dm3] 3R_21398427_SNP [dm6]	G	A	5.851e^-4	0.979	SYNONYMOUS_CODING CG6475
3L	13839083	3L_13839083_SNP [dm3] 3L_13845983_SNP [dm6]	G	A	5.859e^-4	0.979	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1
3L	15352735	3L_15352735_SNP [dm3] 3L_15359635_SNP [dm6]	A	G	5.873e^-4	0.979	INTERGENIC
2L	19100448	2L_19100448_SNP [dm3] 2L_19100448_SNP [dm6]	G	T	5.879e^-4	0.979	INTRON Lim3
2L	19100449	2L_19100449_SNP [dm3] 2L_19100449_SNP [dm6]	A	T	5.879e^-4	0.979	INTRON Lim3
3R	21533039	3R_21533039_SNP [dm3] 3R_25707317_SNP [dm6]	A	G	5.881e^-4	0.979	SYNONYMOUS_CODING LpR2 INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23180500	3R_23180500_SNP [dm3] 3R_27354778_SNP [dm6]	G	C	5.949e^-4	0.979	INTRON CG42534
2R	13324067	2R_13324067_SNP [dm3] 2R_17436562_SNP [dm6]	T	C	5.970e^-4	0.979	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13661712	3L_13661712_SNP [dm3] 3L_13668612_SNP [dm6]	T	C	5.970e^-4	0.979	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
3L	13661724	3L_13661724_SNP [dm3] 3L_13668624_SNP [dm6]	A	G	5.970e^-4	0.979	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
3L	13661733	3L_13661733_SNP [dm3] 3L_13668633_SNP [dm6]	A	T	5.970e^-4	0.979	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
2R	6469796	2R_6469796_SNP [dm3] 2R_10582291_SNP [dm6]	G	C	5.973e^-4	0.979	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
X	22410392	X_22410392_SNP [dm3] X_23008556_SNP [dm6]	G	A	5.974e^-4	0.979	DOWNSTREAM FucTC INTRON CR45009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4707635	2R_4707635_SNP [dm3] 2R_8820130_SNP [dm6]	C	T	5.976e^-4	0.979	INTRON sns
3L	3100297	3L_3100297_SNP [dm3] 3L_3100297_SNP [dm6]	T	G	6.011e^-4	0.979	INTRON Cht7
2R	1755751	2R_1755751_SNP [dm3] 2R_5868246_SNP [dm6]	C	T	6.022e^-4	0.979	INTERGENIC
2L	11658589	2L_11658589_SNP [dm3] 2L_11658589_SNP [dm6]	A	G	6.023e^-4	0.979	DOWNSTREAM CG43167 INTERGENIC
3L	12591606	3L_12591606_SNP [dm3] 3L_12598506_SNP [dm6]	C	T	6.038e^-4	0.979	INTERGENIC
2L	3615409	2L_3615409_SNP [dm3] 2L_3615409_SNP [dm6]	T	C	6.061e^-4	0.979	UPSTREAM CR44310 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2R	10525981	2R_10525981_SNP [dm3] 2R_14638476_SNP [dm6]	A	T	6.067e^-4	0.979	UPSTREAM CG43236 & 1 other INTERGENIC
2L	12209187	2L_12209187_SNP [dm3] 2L_12209187_SNP [dm6]	C	T	6.071e^-4	0.979	SYNONYMOUS_CODING CG31759 INTRON aret
X	9533467	X_9533467_SNP [dm3] X_9639434_SNP [dm6]	T	A	6.072e^-4	0.979	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14701814	2R_14701814_SNP [dm3] 2R_18814309_SNP [dm6]	T	G	6.080e^-4	0.979	UPSTREAM CR43418 INTRON CG15096
3L	13839617	3L_13839617_SNP [dm3] 3L_13846517_SNP [dm6]	C	A	6.098e^-4	0.979	INTRON Hml
3L	8684329	3L_8684329_SNP [dm3] 3L_8691229_SNP [dm6]	G	A	6.106e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16914663	X_16914663_SNP [dm3] X_17020630_SNP [dm6]	T	G	6.114e^-4	0.979	INTRON CG45002
2L	13307158	2L_13307158_SNP [dm3] 2L_13307158_SNP [dm6]	A	G	6.117e^-4	0.979	SYNONYMOUS_CODING CG16825 UPSTREAM CG43779 DOWNSTREAM CG43778 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	13776209	3L_13776209_SNP [dm3] 3L_13783109_SNP [dm6]	C	G	6.118e^-4	0.979	INTRON bru-3
3L	13836166	3L_13836166_SNP [dm3] 3L_13843066_SNP [dm6]	A	G	6.118e^-4	0.979	UPSTREAM CG8757 & 2 others INTERGENIC
3L	13836188	3L_13836188_SNP [dm3] 3L_13843088_SNP [dm6]	G	C	6.118e^-4	0.979	UPSTREAM CG8757 & 2 others INTERGENIC
3L	13839568	3L_13839568_SNP [dm3] 3L_13846468_SNP [dm6]	C	G	6.118e^-4	0.979	INTRON Hml
3R	14353802	3R_14353802_SNP [dm3] 3R_18528080_SNP [dm6]	G	A	6.127e^-4	0.979	INTRON fru
3L	5305132	3L_5305132_SNP [dm3] 3L_5312032_SNP [dm6]	T	A	6.127e^-4	0.979	INTERGENIC
2L	10251261	2L_10251261_SNP [dm3] 2L_10251261_SNP [dm6]	G	C	6.129e^-4	0.979	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15090770	3R_15090770_SNP [dm3] 3R_19265048_SNP [dm6]	T	G	6.148e^-4	0.979	INTERGENIC
3L	4242128	3L_4242128_SNP [dm3] 3L_4242128_SNP [dm6]	G	T	6.173e^-4	0.979	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17398406	X_17398406_SNP [dm3] X_17504373_SNP [dm6]	A	G	6.179e^-4	0.979	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740302	2R_6740302_DEL [dm3] 2R_10852797_DEL [dm6]	AG	A	6.189e^-4	0.979	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	8762264	2L_8762264_SNP [dm3] 2L_8762264_SNP [dm6]	T	C	6.194e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13889860	3L_13889860_SNP [dm3] 3L_13896760_SNP [dm6]	T	C	6.199e^-4	0.979	INTRON dysc
3L	13890009	3L_13890009_SNP [dm3] 3L_13896909_SNP [dm6]	C	T	6.199e^-4	0.979	INTRON dysc
3L	14556788	3L_14556788_SNP [dm3] 3L_14563688_SNP [dm6]	G	A	6.207e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9833998	3L_9833998_SNP [dm3] 3L_9840898_SNP [dm6]	C	T	6.210e^-4	0.979	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18143943	3L_18143943_SNP [dm3] 3L_18150843_SNP [dm6]	T	C	6.237e^-4	0.979	SYNONYMOUS_CODING CG7330
3L	11667156	3L_11667156_SNP [dm3] 3L_11674056_SNP [dm6]	A	G	6.248e^-4	0.979	INTRON CG32085
3L	2711106	3L_2711106_SNP [dm3] 3L_2711106_SNP [dm6]	G	A	6.262e^-4	0.979	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16250228	2R_16250228_SNP [dm3] 2R_20362723_SNP [dm6]	G	A	6.270e^-4	0.979	INTERGENIC
3L	10676645	3L_10676645_SNP [dm3] 3L_10683545_SNP [dm6]	T	C	6.271e^-4	0.979	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11587364	3R_11587364_SNP [dm3] 3R_15761642_SNP [dm6]	G	A	6.273e^-4	0.979	INTERGENIC
3L	6109445	3L_6109445_SNP [dm3] 3L_6116345_SNP [dm6]	T	A	6.273e^-4	0.979	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	14383040	3L_14383040_SNP [dm3] 3L_14389940_SNP [dm6]	A	G	6.275e^-4	0.979	INTERGENIC
3L	13449788	3L_13449788_SNP [dm3] 3L_13456688_SNP [dm6]	C	A	6.277e^-4	0.979	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15123782	3R_15123782_SNP [dm3] 3R_19298060_SNP [dm6]	T	A	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15123806	3R_15123806_SNP [dm3] 3R_19298084_SNP [dm6]	C	G	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15123857	3R_15123857_SNP [dm3] 3R_19298135_SNP [dm6]	C	A	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15123861	3R_15123861_INS [dm3] 3R_19298139_INS [dm6]	C	CTGA	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15123864	3R_15123864_MNP [dm3] 3R_19298142_MNP [dm6]	TTC	CAG	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15123870	3R_15123870_SNP [dm3] 3R_19298148_SNP [dm6]	A	T	6.280e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8901187	X_8901187_SNP [dm3] X_9007154_SNP [dm6]	G	A	6.305e^-4	0.979	INTRON rdgA & 1 other
2R	3957007	2R_3957007_SNP [dm3] 2R_8069502_SNP [dm6]	C	T	6.305e^-4	0.979	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	16087891	2R_16087891_SNP [dm3] 2R_20200386_SNP [dm6]	C	G	6.309e^-4	0.979	INTERGENIC
3L	10676092	3L_10676092_SNP [dm3] 3L_10682992_SNP [dm6]	G	T	6.315e^-4	0.979	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8407423	2R_8407423_SNP [dm3] 2R_12519918_SNP [dm6]	A	G	6.318e^-4	0.979	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2R	8407432	2R_8407432_SNP [dm3] 2R_12519927_SNP [dm6]	G	A	6.318e^-4	0.979	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2L	12028559	2L_12028559_SNP [dm3] 2L_12028559_SNP [dm6]	G	A	6.341e^-4	0.979	INTRON dmGlut	TF binding site mE1_TFBS_cad
X	5487232	X_5487232_SNP [dm3] X_5593199_SNP [dm6]	G	A	6.350e^-4	0.979	INTERGENIC
3L	7027314	3L_7027314_SNP [dm3] 3L_7034214_SNP [dm6]	C	T	6.370e^-4	0.979	INTRON Mp
2L	13306951	2L_13306951_SNP [dm3] 2L_13306951_SNP [dm6]	G	C	6.380e^-4	0.979	SYNONYMOUS_CODING CG16825 UPSTREAM CG43779 DOWNSTREAM CG43778 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13306998	2L_13306998_SNP [dm3] 2L_13306998_SNP [dm6]	G	A	6.380e^-4	0.979	NON_SYNONYMOUS_CODING CG16825 UPSTREAM CG43779 DOWNSTREAM CG43778 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18856368	2R_18856368_SNP [dm3] 2R_22968845_SNP [dm6]	T	G	6.390e^-4	0.979	INTERGENIC
3L	3548731	3L_3548731_SNP [dm3] 3L_3548731_SNP [dm6]	C	T	6.417e^-4	0.979	INTRON Eip63E
2R	6590677	2R_6590677_SNP [dm3] 2R_10703172_SNP [dm6]	A	C	6.423e^-4	0.979	INTRON stan
3L	873298	3L_873298_SNP [dm3] 3L_873298_SNP [dm6]	T	C	6.439e^-4	0.979	INTRON CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12632215	3R_12632215_SNP [dm3] 3R_16806493_SNP [dm6]	T	A	6.445e^-4	0.979	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
2R	16868560	2R_16868560_SNP [dm3] 2R_20981055_SNP [dm6]	A	C	6.452e^-4	0.979	INTRON CG9313	TF binding site mE1_TFBS_cad
2R	1768765	2R_1768765_SNP [dm3] 2R_5881260_SNP [dm6]	C	T	6.453e^-4	0.979	UPSTREAM CG44438 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1743247	2R_1743247_DEL [dm3] 2R_5855742_DEL [dm6]	GACATGGGAGTCGGATTGG...	G	6.480e^-4	0.979	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12399327	2L_12399327_SNP [dm3] 2L_12399327_SNP [dm6]	T	C	6.499e^-4	0.979	SYNONYMOUS_CODING Pkd2
2R	15827415	2R_15827415_SNP [dm3] 2R_19939910_SNP [dm6]	T	C	6.532e^-4	0.979	EXON CR43421	TF binding site BDTNP1_TFBS_prd
3R	12384608	3R_12384608_SNP [dm3] 3R_16558886_SNP [dm6]	C	A	6.533e^-4	0.979	INTRON CG42342
2R	17645567	2R_17645567_SNP [dm3] 2R_21758062_SNP [dm6]	T	C	6.533e^-4	0.979	DOWNSTREAM Grx-1 INTERGENIC
3L	18727672	3L_18727672_SNP [dm3] 3L_18734572_SNP [dm6]	A	C	6.544e^-4	0.979	INTERGENIC
2R	1403829	2R_1403829_SNP [dm3] 2R_5516324_SNP [dm6]	A	G	6.569e^-4	0.979	INTRON CG30438
3R	18450910	3R_18450910_DEL [dm3] 3R_22625188_DEL [dm6]	ACA	A	6.579e^-4	0.979	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13484467	3L_13484467_SNP [dm3] 3L_13491367_SNP [dm6]	G	T	6.582e^-4	0.979	INTRON Tgi
2L	15247917	2L_15247917_SNP [dm3] 2L_15247917_SNP [dm6]	A	T	6.587e^-4	0.979	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	17522456	2L_17522456_SNP [dm3] 2L_17522456_SNP [dm6]	G	A	6.587e^-4	0.979	SYNONYMOUS_CODING CG15143 INTRON Dhc36C	TF binding site mE1_TFBS_sens
3R	12574311	3R_12574311_SNP [dm3] 3R_16748589_SNP [dm6]	A	C	6.591e^-4	0.979	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	6.594e^-4	0.979	INTERGENIC
3R	15123774	3R_15123774_SNP [dm3] 3R_19298052_SNP [dm6]	G	A	6.596e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3037956	3L_3037956_SNP [dm3] 3L_3037956_SNP [dm6]	A	G	6.597e^-4	0.979	SYNONYMOUS_CODING CG2162 UPSTREAM CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	7284721	3R_7284721_SNP [dm3] 3R_11458999_SNP [dm6]	A	G	6.597e^-4	0.979	UPSTREAM PGRP-LB INTRON CG17230 & 1 other
3L	7692564	3L_7692564_SNP [dm3] 3L_7699464_SNP [dm6]	A	T	6.602e^-4	0.979	INTRON CG32373 & 1 other
3R	12672993	3R_12672993_INS [dm3] 3R_16847271_INS [dm6]	A	AAAAGCAGCA	6.631e^-4	0.979	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9503728	2L_9503728_SNP [dm3] 2L_9503728_SNP [dm6]	C	A	6.632e^-4	0.979	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6794919	2R_6794919_SNP [dm3] 2R_10907414_SNP [dm6]	T	A	6.660e^-4	0.979	INTERGENIC
2R	6794926	2R_6794926_SNP [dm3] 2R_10907421_SNP [dm6]	T	A	6.660e^-4	0.979	INTERGENIC
3L	15716417	3L_15716417_SNP [dm3] 3L_15723317_SNP [dm6]	G	A	6.660e^-4	0.979	INTRON comm
2L	7274484	2L_7274484_SNP [dm3] 2L_7274484_SNP [dm6]	C	T	6.663e^-4	0.979	INTRON Wnt4
3L	2288349	3L_2288349_SNP [dm3] 3L_2288349_SNP [dm6]	G	A	6.672e^-4	0.979	INTRON MsR2
3L	2288357	3L_2288357_DEL [dm3] 3L_2288357_DEL [dm6]	GCTTTTGTTA	G	6.672e^-4	0.979	INTRON MsR2
X	12677099	X_12677099_SNP [dm3] X_12783066_SNP [dm6]	G	A	6.691e^-4	0.979	INTRON CG32647
2L	1443955	2L_1443955_SNP [dm3] 2L_1443955_SNP [dm6]	G	T	6.697e^-4	0.979	DOWNSTREAM CG43402 INTERGENIC
2R	19876589	2R_19876589_SNP [dm3] 2R_23989066_SNP [dm6]	C	T	6.700e^-4	0.979	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9422432	2L_9422432_SNP [dm3] 2L_9422432_SNP [dm6]	A	C	6.709e^-4	0.979	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9354250	2L_9354250_SNP [dm3] 2L_9354250_SNP [dm6]	A	G	6.723e^-4	0.979	INTERGENIC
2L	9354267	2L_9354267_SNP [dm3] 2L_9354267_SNP [dm6]	A	G	6.723e^-4	0.979	INTERGENIC
3R	4823689	3R_4823689_SNP [dm3] 3R_8997967_SNP [dm6]	G	A	6.731e^-4	0.979	INTRON CG31100 & 1 other
2L	11940630	2L_11940630_SNP [dm3] 2L_11940630_SNP [dm6]	C	T	6.738e^-4	0.979	INTERGENIC
2L	11940635	2L_11940635_SNP [dm3] 2L_11940635_SNP [dm6]	A	G	6.738e^-4	0.979	INTERGENIC
3R	14033285	3R_14033285_SNP [dm3] 3R_18207563_SNP [dm6]	A	G	6.747e^-4	0.979	INTRON CG7985
3L	10453062	3L_10453062_SNP [dm3] 3L_10459962_SNP [dm6]	A	T	6.751e^-4	0.979	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
3R	19964797	3R_19964797_SNP [dm3] 3R_24139075_SNP [dm6]	C	T	6.755e^-4	0.979	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1377448	2R_1377448_SNP [dm3] 2R_5489943_SNP [dm6]	G	A	6.768e^-4	0.979	INTRON CG30440	transposable element FlyBase
2R	1378376	2R_1378376_SNP [dm3] 2R_5490871_SNP [dm6]	T	C	6.768e^-4	0.979	INTRON CG30440
2R	1378861	2R_1378861_SNP [dm3] 2R_5491356_SNP [dm6]	T	C	6.768e^-4	0.979	INTRON CG30440
2R	1382243	2R_1382243_SNP [dm3] 2R_5494738_SNP [dm6]	G	A	6.768e^-4	0.979	NON_SYNONYMOUS_CODING CG30440
2R	1386479	2R_1386479_SNP [dm3] 2R_5498974_SNP [dm6]	G	A	6.768e^-4	0.979	INTRON CG30438
2R	1386795	2R_1386795_DEL [dm3] 2R_5499290_DEL [dm6]	AATGAGATTTTGCATCGATG...	A	6.768e^-4	0.979	INTRON CG30438
2R	1386827	2R_1386827_SNP [dm3] 2R_5499322_SNP [dm6]	G	C	6.768e^-4	0.979	INTRON CG30438
2R	1388237	2R_1388237_SNP [dm3] 2R_5500732_SNP [dm6]	C	T	6.768e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1388856	2R_1388856_SNP [dm3] 2R_5501351_SNP [dm6]	C	G	6.768e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1389210	2R_1389210_DEL [dm3] 2R_5501705_DEL [dm6]	AACGTGTTACTACCTAC...	T	6.768e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1390496	2R_1390496_SNP [dm3] 2R_5502991_SNP [dm6]	C	A	6.768e^-4	0.979	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	1390777	2R_1390777_SNP [dm3] 2R_5503272_SNP [dm6]	G	A	6.768e^-4	0.979	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1390815	2R_1390815_DEL [dm3] 2R_5503310_DEL [dm6]	TT	T	6.768e^-4	0.979	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1391781	2R_1391781_SNP [dm3] 2R_5504276_SNP [dm6]	A	T	6.768e^-4	0.979	INTRON CG30438 & 1 other
2R	1393010	2R_1393010_SNP [dm3] 2R_5505505_SNP [dm6]	G	A	6.768e^-4	0.979	INTRON CG30438 & 1 other
2R	1393640	2R_1393640_SNP [dm3] 2R_5506135_SNP [dm6]	T	A	6.768e^-4	0.979	INTRON CG30438 & 1 other
2R	1394337	2R_1394337_SNP [dm3] 2R_5506832_SNP [dm6]	T	G	6.768e^-4	0.979	INTRON CG30438 & 1 other
2R	1394382	2R_1394382_SNP [dm3] 2R_5506877_SNP [dm6]	G	C	6.768e^-4	0.979	INTRON CG30438 & 1 other
2R	1396774	2R_1396774_SNP [dm3] 2R_5509269_SNP [dm6]	G	A	6.768e^-4	0.979	INTRON CG30438
2R	1396775	2R_1396775_SNP [dm3] 2R_5509270_SNP [dm6]	T	C	6.768e^-4	0.979	INTRON CG30438
2R	1397235	2R_1397235_SNP [dm3] 2R_5509730_SNP [dm6]	C	G	6.768e^-4	0.979	INTRON CG30438
2R	1401975	2R_1401975_SNP [dm3] 2R_5514470_SNP [dm6]	T	A	6.768e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1402592	2R_1402592_SNP [dm3] 2R_5515087_SNP [dm6]	A	G	6.768e^-4	0.979	INTRON CG30438
2R	1404629	2R_1404629_SNP [dm3] 2R_5517124_SNP [dm6]	G	A	6.768e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	19894083	2R_19894083_SNP [dm3] 2R_24006560_SNP [dm6]	A	G	6.778e^-4	0.979	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1213816	2L_1213816_SNP [dm3] 2L_1213816_SNP [dm6]	T	C	6.782e^-4	0.979	DOWNSTREAM CR45346 INTERGENIC
2L	2129063	2L_2129063_SNP [dm3] 2L_2129063_SNP [dm6]	C	T	6.792e^-4	0.979	NON_SYNONYMOUS_CODING CG4259
2R	1394599	2R_1394599_SNP [dm3] 2R_5507094_SNP [dm6]	T	G	6.797e^-4	0.979	INTRON CG30438 & 1 other
2R	1407522	2R_1407522_SNP [dm3] 2R_5520017_SNP [dm6]	A	T	6.797e^-4	0.979	INTRON CG30438
X	7630279	X_7630279_SNP [dm3] X_7736246_SNP [dm6]	T	C	6.800e^-4	0.979	SYNONYMOUS_CODING Rab39 UPSTREAM Tom40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7594039	X_7594039_SNP [dm3] X_7700006_SNP [dm6]	T	G	6.829e^-4	0.979	INTRON CHES-1-like
3L	13862422	3L_13862422_SNP [dm3] 3L_13869322_SNP [dm6]	G	T	6.839e^-4	0.979	UTR_3_PRIME dysc
3L	10529693	3L_10529693_SNP [dm3] 3L_10536593_SNP [dm6]	T	A	6.848e^-4	0.979	INTRON A2bp1
2R	6739425	2R_6739425_SNP [dm3] 2R_10851920_SNP [dm6]	G	T	6.852e^-4	0.979	INTRON CG30015
3L	13580394	3L_13580394_SNP [dm3] 3L_13587294_SNP [dm6]	C	A	6.858e^-4	0.979	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	16773113	3L_16773113_SNP [dm3] 3L_16780013_SNP [dm6]	G	C	6.875e^-4	0.979	UPSTREAM CG9705 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17568019	2R_17568019_SNP [dm3] 2R_21680514_SNP [dm6]	A	G	6.889e^-4	0.979	SPLICE_SITE_REGION CG30263 SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17568024	2R_17568024_SNP [dm3] 2R_21680519_SNP [dm6]	G	A	6.889e^-4	0.979	SPLICE_SITE_REGION CG30263 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20039521	X_20039521_INS [dm3] X_20145488_INS [dm6]	T	TTTAGTGTTATT...	6.898e^-4	0.979	INTERGENIC	transposable element FlyBase
2R	1390803	2R_1390803_SNP [dm3] 2R_5503298_SNP [dm6]	A	G	6.899e^-4	0.979	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1395891	2R_1395891_SNP [dm3] 2R_5508386_SNP [dm6]	G	A	6.899e^-4	0.979	UPSTREAM TpnC4 INTRON CG30438
X	1534138	X_1534138_SNP [dm3] X_1640105_SNP [dm6]	T	A	6.912e^-4	0.979	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
3R	18257161	3R_18257161_SNP [dm3] 3R_22431439_SNP [dm6]	C	T	6.914e^-4	0.979	INTRON CG13847
2L	17579680	2L_17579680_SNP [dm3] 2L_17579680_SNP [dm6]	A	G	6.919e^-4	0.979	EXON CR45698
3R	25947832	3R_25947832_SNP [dm3] 3R_30122110_SNP [dm6]	C	T	6.922e^-4	0.979	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10800219	2R_10800219_SNP [dm3] 2R_14912714_SNP [dm6]	T	C	6.937e^-4	0.979	UPSTREAM CG10249 INTRON CG10249	TF binding site mE1_TFBS_sens
3L	2566563	3L_2566563_SNP [dm3] 3L_2566563_SNP [dm6]	G	T	6.942e^-4	0.979	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14556565	3L_14556565_SNP [dm3] 3L_14563465_SNP [dm6]	C	G	6.942e^-4	0.979	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
X	6285305	X_6285305_DEL [dm3] X_6391272_DEL [dm6]	CCA	T	6.945e^-4	0.979	INTERGENIC
2L	12829375	2L_12829375_SNP [dm3] 2L_12829375_SNP [dm6]	A	G	6.949e^-4	0.979	INTERGENIC
3L	10835038	3L_10835038_INS [dm3] 3L_10841938_INS [dm6]	T	TTCATCTCCACCT...	6.953e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2453122	3R_2453122_SNP [dm3] 3R_6627400_SNP [dm6]	A	G	6.969e^-4	0.979	SYNONYMOUS_CODING sowi DOWNSTREAM CG15177
2L	12745638	2L_12745638_SNP [dm3] 2L_12745638_SNP [dm6]	A	G	7.007e^-4	0.979	DOWNSTREAM MRP INTERGENIC	TF binding site mE1_TFBS_inv
X	5487619	X_5487619_SNP [dm3] X_5593586_SNP [dm6]	G	A	7.009e^-4	0.979	UPSTREAM Vsx1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8696265	3L_8696265_INS [dm3] 3L_8703165_INS [dm6]	A	AA	7.011e^-4	0.979	INTERGENIC
2R	1427286	2R_1427286_INS [dm3] 2R_5539781_INS [dm6]	G	GAAGGGTAATAAAACGCTCA...	7.023e^-4	0.979	INTRON CG30438
2R	13770692	2R_13770692_SNP [dm3] 2R_17883187_SNP [dm6]	G	A	7.029e^-4	0.979	UPSTREAM CG30110 INTRON Elk
3L	14954405	3L_14954405_SNP [dm3] 3L_14961305_SNP [dm6]	G	T	7.029e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5756486	2L_5756486_SNP [dm3] 2L_5756486_SNP [dm6]	A	G	7.031e^-4	0.979	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22745589	3R_22745589_SNP [dm3] 3R_26919867_SNP [dm6]	A	T	7.037e^-4	0.979	INTRON sda	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3939192	X_3939192_SNP [dm3] X_4045159_SNP [dm6]	A	G	7.044e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2829224	2L_2829224_SNP [dm3] 2L_2829224_SNP [dm6]	A	G	7.046e^-4	0.979	INTRON Duox	TF binding site BDTNP1_TFBS_dl
3L	9207764	3L_9207764_SNP [dm3] 3L_9214664_SNP [dm6]	T	C	7.049e^-4	0.979	SYNONYMOUS_CODING CG4476
3L	11322338	3L_11322338_SNP [dm3] 3L_11329238_SNP [dm6]	A	C	7.067e^-4	0.979	INTERGENIC
3L	13837634	3L_13837634_SNP [dm3] 3L_13844534_SNP [dm6]	A	C	7.077e^-4	0.979	NON_SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13837642	3L_13837642_SNP [dm3] 3L_13844542_SNP [dm6]	C	T	7.077e^-4	0.979	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13309049	2L_13309049_SNP [dm3] 2L_13309049_SNP [dm6]	C	T	7.084e^-4	0.979	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG43778	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11485889	2L_11485889_SNP [dm3] 2L_11485889_SNP [dm6]	T	A	7.092e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485847	2L_11485847_SNP [dm3] 2L_11485847_SNP [dm6]	G	A	7.097e^-4	0.979	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13377082	3L_13377082_SNP [dm3] 3L_13383982_SNP [dm6]	G	T	7.102e^-4	0.979	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	13377100	3L_13377100_SNP [dm3] 3L_13384000_SNP [dm6]	A	T	7.102e^-4	0.979	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377128	3L_13377128_SNP [dm3] 3L_13384028_SNP [dm6]	A	G	7.102e^-4	0.979	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377129	3L_13377129_SNP [dm3] 3L_13384029_SNP [dm6]	C	G	7.102e^-4	0.979	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	13377150	3L_13377150_SNP [dm3] 3L_13384050_SNP [dm6]	A	C	7.102e^-4	0.979	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	15491223	X_15491223_SNP [dm3] X_15597190_SNP [dm6]	T	C	7.119e^-4	0.979	INTERGENIC
2R	8537421	2R_8537421_SNP [dm3] 2R_12649916_SNP [dm6]	G	A	7.128e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8244833	3L_8244833_SNP [dm3] 3L_8251733_SNP [dm6]	A	T	7.147e^-4	0.979	INTRON Dscam4
3R	15123906	3R_15123906_SNP [dm3] 3R_19298184_SNP [dm6]	A	C	7.163e^-4	0.979	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13842361	3L_13842361_SNP [dm3] 3L_13849261_SNP [dm6]	T	G	7.180e^-4	0.979	SYNONYMOUS_CODING Hml
3L	13843688	3L_13843688_SNP [dm3] 3L_13850588_SNP [dm6]	T	G	7.180e^-4	0.979	SYNONYMOUS_CODING Hml
3L	13457797	3L_13457797_SNP [dm3] 3L_13464697_SNP [dm6]	T	A	7.180e^-4	0.979	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2344888	3R_2344888_DEL [dm3] 3R_6519166_DEL [dm6]	CAATAAACAATCAAATAAAA...	C	7.193e^-4	0.979	INTERGENIC
3R	2378274	3R_2378274_SNP [dm3] 3R_6552552_SNP [dm6]	G	A	7.193e^-4	0.979	INTRON dpr11
2L	17492187	2L_17492187_SNP [dm3] 2L_17492187_SNP [dm6]	C	T	7.209e^-4	0.979	UTR_5_PRIME qua INTRON qua
2R	13876921	2R_13876921_SNP [dm3] 2R_17989416_SNP [dm6]	A	G	7.272e^-4	0.979	INTRON dpr13
3L	14717693	3L_14717693_SNP [dm3] 3L_14724593_SNP [dm6]	G	A	7.291e^-4	0.979	INTRON ome
3R	17350253	3R_17350253_SNP [dm3] 3R_21524531_SNP [dm6]	T	A	7.299e^-4	0.979	INTRON CG7956
X	2475471	X_2475471_SNP [dm3] X_2581438_SNP [dm6]	T	C	7.303e^-4	0.979	UPSTREAM Vha36-3 INTRON CG13759
3L	11624408	3L_11624408_SNP [dm3] 3L_11631308_SNP [dm6]	G	T	7.318e^-4	0.979	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
2L	3185606	2L_3185606_SNP [dm3] 2L_3185606_SNP [dm6]	C	T	7.327e^-4	0.979	INTRON CG34393
3R	26810771	3R_26810771_SNP [dm3] 3R_30985049_SNP [dm6]	T	C	7.336e^-4	0.979	INTRON 5-HT7
X	16857465	X_16857465_SNP [dm3] X_16963432_SNP [dm6]	T	C	7.358e^-4	0.979	INTRON CG9086	TF binding site mE1_TFBS_sens
2L	5161702	2L_5161702_SNP [dm3] 2L_5161702_SNP [dm6]	C	T	7.366e^-4	0.979	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9532104	2L_9532104_SNP [dm3] 2L_9532104_SNP [dm6]	T	G	7.386e^-4	0.979	INTRON Oatp30B
3R	3972650	3R_3972650_SNP [dm3] 3R_8146928_SNP [dm6]	C	T	7.399e^-4	0.979	DOWNSTREAM grn INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3770320	2L_3770320_SNP [dm3] 2L_3770320_SNP [dm6]	A	C	7.401e^-4	0.979	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	16981524	3L_16981524_SNP [dm3] 3L_16988424_SNP [dm6]	G	T	7.403e^-4	0.979	INTRON Exn
2R	4733637	2R_4733637_SNP [dm3] 2R_8846132_SNP [dm6]	G	A	7.440e^-4	0.979	INTRON sns
3L	1609956	3L_1609956_SNP [dm3] 3L_1609956_SNP [dm6]	C	T	7.443e^-4	0.979	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	17644249	2R_17644249_SNP [dm3] 2R_21756744_SNP [dm6]	C	T	7.449e^-4	0.979	UPSTREAM Grx-1 INTERGENIC
3L	6270019	3L_6270019_DEL [dm3] 3L_6276919_DEL [dm6]	TTTTCGGGTCCCTCGACAAT...	T	7.465e^-4	0.979	UTR_3_PRIME CG43168
2L	19101233	2L_19101233_INS [dm3] 2L_19101233_INS [dm6]	A	AA	7.466e^-4	0.979	UPSTREAM CG17344 & 1 other INTRON Lim3
3L	13352304	3L_13352304_SNP [dm3] 3L_13359204_SNP [dm6]	C	G	7.466e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8368712	2L_8368712_SNP [dm3] 2L_8368712_SNP [dm6]	G	T	7.472e^-4	0.979	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2R	1768508	2R_1768508_SNP [dm3] 2R_5881003_SNP [dm6]	T	A	7.474e^-4	0.979	UPSTREAM CG44438 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10850597	3L_10850597_SNP [dm3] 3L_10857497_SNP [dm6]	A	G	7.483e^-4	0.979	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3927637	2L_3927637_SNP [dm3] 2L_3927637_SNP [dm6]	G	T	7.492e^-4	0.979	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12116051	2R_12116051_SNP [dm3] 2R_16228546_SNP [dm6]	T	C	7.496e^-4	0.979	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	974974	3R_974974_SNP [dm3] 3R_5149252_SNP [dm6]	A	G	7.499e^-4	0.979	INTERGENIC
2L	6464677	2L_6464677_SNP [dm3] 2L_6464677_SNP [dm6]	A	G	7.506e^-4	0.979	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1405105	2R_1405105_SNP [dm3] 2R_5517600_SNP [dm6]	A	G	7.522e^-4	0.979	INTRON CG30438	transposable element FlyBase
3R	24762313	3R_24762313_SNP [dm3] 3R_28936591_SNP [dm6]	A	G	7.523e^-4	0.979	INTRON CG14521
2L	15801702	2L_15801702_DEL [dm3] 2L_15801702_DEL [dm6]	CCCACATGCTGGCCAGCTAA...	C	7.548e^-4	0.979	INTERGENIC
3L	13844973	3L_13844973_SNP [dm3] 3L_13851873_SNP [dm6]	T	C	7.559e^-4	0.979	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	2778769	3L_2778769_SNP [dm3] 3L_2778769_SNP [dm6]	C	T	7.564e^-4	0.979	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7844252	2L_7844252_SNP [dm3] 2L_7844252_SNP [dm6]	C	T	7.565e^-4	0.979	DOWNSTREAM CG14535 INTERGENIC
X	16893628	X_16893628_SNP [dm3] X_16999595_SNP [dm6]	T	C	7.571e^-4	0.979	INTRON CG45002
X	20824983	X_20824983_SNP [dm3] X_20953956_SNP [dm6]	T	A	7.580e^-4	0.979	INTERGENIC
2L	11518274	2L_11518274_SNP [dm3] 2L_11518274_SNP [dm6]	A	G	7.583e^-4	0.979	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2L	15148906	2L_15148906_SNP [dm3] 2L_15148906_SNP [dm6]	G	A	7.597e^-4	0.979	INTERGENIC
2R	1426181	2R_1426181_SNP [dm3] 2R_5538676_SNP [dm6]	A	C	7.614e^-4	0.979	INTRON CG30438
3L	2287668	3L_2287668_SNP [dm3] 3L_2287668_SNP [dm6]	T	C	7.618e^-4	0.979	INTRON MsR2
X	19903330	X_19903330_SNP [dm3] X_20009297_SNP [dm6]	G	A	7.623e^-4	0.979	INTRON Dop2R
3L	11481756	3L_11481756_SNP [dm3] 3L_11488656_SNP [dm6]	G	A	7.624e^-4	0.979	INTRON chrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	2449170	3R_2449170_SNP [dm3] 3R_6623448_SNP [dm6]	G	T	7.633e^-4	0.979	INTERGENIC
2L	11658644	2L_11658644_SNP [dm3] 2L_11658644_SNP [dm6]	A	G	7.646e^-4	0.979	DOWNSTREAM CG43167 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10575055	2L_10575055_SNP [dm3] 2L_10575055_SNP [dm6]	A	T	7.646e^-4	0.979	DOWNSTREAM w-cup INTRON Trim9
2R	16841712	2R_16841712_SNP [dm3] 2R_20954207_SNP [dm6]	G	C	7.656e^-4	0.979	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10774664	2R_10774664_SNP [dm3] 2R_14887159_SNP [dm6]	A	G	7.657e^-4	0.979	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
3L	12204272	3L_12204272_SNP [dm3] 3L_12211172_SNP [dm6]	C	T	7.657e^-4	0.979	UTR_3_PRIME app INTRON app
3L	12591749	3L_12591749_INS [dm3] 3L_12598649_INS [dm6]	A	AA	7.666e^-4	0.979	INTERGENIC
3L	15932923	3L_15932923_SNP [dm3] 3L_15939823_SNP [dm6]	A	C	7.667e^-4	0.979	INTRON Pka-C3
3L	1145265	3L_1145265_SNP [dm3] 3L_1145265_SNP [dm6]	A	G	7.671e^-4	0.979	INTRON bab2
X	19044387	X_19044387_DEL [dm3] X_19150354_DEL [dm6]	TCCAG	T	7.679e^-4	0.979	INTRON RhoGAP18B
2L	21054237	2L_21054237_SNP [dm3] 2L_21054237_SNP [dm6]	C	T	7.690e^-4	0.979	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_dl
3L	11195656	3L_11195656_SNP [dm3] 3L_11202556_SNP [dm6]	G	C	7.711e^-4	0.979	DOWNSTREAM CG14141 INTRON Plod
2L	5678847	2L_5678847_SNP [dm3] 2L_5678847_SNP [dm6]	T	C	7.734e^-4	0.979	SYNONYMOUS_CODING CG12511
3R	2544434	3R_2544434_DEL [dm3] 3R_6718712_DEL [dm6]	TCAGATTTAT	T	7.751e^-4	0.979	INTRON pb	regulatory region REDfly_CRMs
3R	2544445	3R_2544445_DEL [dm3] 3R_6718723_DEL [dm6]	CCGCTAAA	C	7.751e^-4	0.979	INTRON pb	regulatory region REDfly_CRMs
3L	11109215	3L_11109215_SNP [dm3] 3L_11116115_SNP [dm6]	T	A	7.769e^-4	0.979	INTRON fd68A
2L	21976904	2L_21976904_DEL [dm3] 2L_21976904_DEL [dm6]	GATAG	G	7.771e^-4	0.979	INTERGENIC
X	18452734	X_18452734_DEL [dm3] X_18558701_DEL [dm6]	AA	A	7.780e^-4	0.979	INTRON Bx
X	18452771	X_18452771_SNP [dm3] X_18558738_SNP [dm6]	C	T	7.780e^-4	0.979	INTRON Bx
X	18452799	X_18452799_SNP [dm3] X_18558766_SNP [dm6]	G	T	7.780e^-4	0.979	INTRON Bx
2R	17857798	2R_17857798_SNP [dm3] 2R_21970293_SNP [dm6]	C	T	7.790e^-4	0.979	DOWNSTREAM CG34029 INTRON ppk9
3R	17828434	3R_17828434_SNP [dm3] 3R_22002712_SNP [dm6]	A	G	7.795e^-4	0.979	INTRON Eip93F
3L	1144590	3L_1144590_SNP [dm3] 3L_1144590_SNP [dm6]	G	C	7.798e^-4	0.979	INTRON bab2
3R	4619335	3R_4619335_SNP [dm3] 3R_8793613_SNP [dm6]	A	G	7.813e^-4	0.979	INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA
X	13346440	X_13346440_SNP [dm3] X_13452407_SNP [dm6]	G	A	7.821e^-4	0.979	INTRON Neto
2L	1664316	2L_1664316_SNP [dm3] 2L_1664316_SNP [dm6]	A	T	7.828e^-4	0.979	INTRON chinmo
2L	5743381	2L_5743381_SNP [dm3] 2L_5743381_SNP [dm6]	A	G	7.849e^-4	0.979	INTRON CG11030
2L	5743383	2L_5743383_SNP [dm3] 2L_5743383_SNP [dm6]	T	G	7.849e^-4	0.979	INTRON CG11030
2L	5743385	2L_5743385_INS [dm3] 2L_5743385_INS [dm6]	T	TTATTCCC	7.849e^-4	0.979	INTRON CG11030
2L	7480747	2L_7480747_SNP [dm3] 2L_7480747_SNP [dm6]	G	A	7.850e^-4	0.979	SYNONYMOUS_CODING Ziz
2L	7480938	2L_7480938_SNP [dm3] 2L_7480938_SNP [dm6]	T	G	7.850e^-4	0.979	INTRON Ziz
3L	13870049	3L_13870049_SNP [dm3] 3L_13876949_SNP [dm6]	A	G	7.855e^-4	0.979	INTRON dysc
X	12181320	X_12181320_SNP [dm3] X_12287287_SNP [dm6]	A	G	7.857e^-4	0.979	INTRON Ten-a
2R	19550285	2R_19550285_SNP [dm3] 2R_23662762_SNP [dm6]	G	A	7.875e^-4	0.979	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
2R	15938723	2R_15938723_INS [dm3] 2R_20051218_INS [dm6]	T	TA	7.877e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2554608	3L_2554608_SNP [dm3] 3L_2554608_SNP [dm6]	T	A	7.881e^-4	0.979	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	2838419	3R_2838419_SNP [dm3] 3R_7012697_SNP [dm6]	T	G	7.881e^-4	0.979	INTERGENIC
X	3757708	X_3757708_SNP [dm3] X_3863675_SNP [dm6]	C	G	7.882e^-4	0.979	SYNONYMOUS_CODING yin UPSTREAM roX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1752922	2R_1752922_SNP [dm3] 2R_5865417_SNP [dm6]	A	G	7.884e^-4	0.979	INTERGENIC
2R	1401691	2R_1401691_SNP [dm3] 2R_5514186_SNP [dm6]	T	A	7.898e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1415509	2R_1415509_SNP [dm3] 2R_5528004_SNP [dm6]	A	G	7.898e^-4	0.979	INTRON CG30438
2R	1418332	2R_1418332_SNP [dm3] 2R_5530827_SNP [dm6]	T	A	7.898e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1422122	2R_1422122_SNP [dm3] 2R_5534617_SNP [dm6]	A	G	7.898e^-4	0.979	INTRON CG30438	transposable element FlyBase
2R	1427365	2R_1427365_SNP [dm3] 2R_5539860_SNP [dm6]	G	A	7.898e^-4	0.979	INTRON CG30438

By genomic position
Variant impact
Gene name

alive phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results