DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.872e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	8.213	0.0165

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1755 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5291464	X_5291464_SNP [dm3] X_5397431_SNP [dm6]	T	A	7.179e^-7	0.681	DOWNSTREAM SK INTRON SK
X	9916018	X_9916018_SNP [dm3] X_10021985_SNP [dm6]	A	G	9.382e^-7	0.681	INTRON Cht6
X	12585036	X_12585036_SNP [dm3] X_12691003_SNP [dm6]	T	C	1.483e^-6	0.681	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14575585	2L_14575585_SNP [dm3] 2L_14575585_SNP [dm6]	C	A	1.699e^-6	0.681	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	16956753	X_16956753_SNP [dm3] X_17062720_SNP [dm6]	T	A	1.817e^-6	0.681	INTRON CG45002
X	7769780	X_7769780_SNP [dm3] X_7875747_SNP [dm6]	T	A	2.258e^-6	0.706	INTRON Ir7c
3L	1385560	3L_1385560_SNP [dm3] 3L_1385560_SNP [dm6]	C	T	3.394e^-6	0.732	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	11010556	2L_11010556_SNP [dm3] 2L_11010556_SNP [dm6]	G	A	4.007e^-6	0.732	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	1121647	2L_1121647_SNP [dm3] 2L_1121647_SNP [dm6]	G	A	4.046e^-6	0.732	INTRON Pino
2L	10917291	2L_10917291_SNP [dm3] 2L_10917291_SNP [dm6]	A	G	4.197e^-6	0.732	UTR_3_PRIME dpr2 DOWNSTREAM dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2926968	2R_2926968_SNP [dm3] 2R_7039463_SNP [dm6]	G	T	5.045e^-6	0.732	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
2L	1121414	2L_1121414_SNP [dm3] 2L_1121414_SNP [dm6]	C	T	5.254e^-6	0.732	INTRON Pino
2R	14660338	2R_14660338_SNP [dm3] 2R_18772833_SNP [dm6]	C	T	5.425e^-6	0.732	SYNONYMOUS_CODING Mctp
2L	1121632	2L_1121632_SNP [dm3] 2L_1121632_SNP [dm6]	C	T	5.546e^-6	0.732	INTRON Pino
X	12999492	X_12999492_SNP [dm3] X_13105459_SNP [dm6]	A	G	5.877e^-6	0.732	INTRON CG43313
2R	14660502	2R_14660502_SNP [dm3] 2R_18772997_SNP [dm6]	A	T	6.708e^-6	0.732	SYNONYMOUS_CODING Mctp
X	11265066	X_11265066_SNP [dm3] X_11371033_SNP [dm6]	A	C	6.891e^-6	0.732	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16329130	3L_16329130_SNP [dm3] 3L_16336030_SNP [dm6]	C	G	7.029e^-6	0.732	INTERGENIC
2L	14574262	2L_14574262_SNP [dm3] 2L_14574262_SNP [dm6]	A	C	7.837e^-6	0.773	INTERGENIC
2R	13528713	2R_13528713_SNP [dm3] 2R_17641208_SNP [dm6]	T	G	9.754e^-6	0.803	INTERGENIC
3R	20773779	3R_20773779_SNP [dm3] 3R_24948057_SNP [dm6]	G	T	1.001e^-5	0.803	NON_SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12606656	2L_12606656_INS [dm3] 2L_12606656_INS [dm6]	A	ACTCATATATACGAGGCA...	1.007e^-5	0.803	INTRON nub	TF binding site BDTNP1_TFBS_da
2L	14575111	2L_14575111_SNP [dm3] 2L_14575111_SNP [dm6]	A	T	1.107e^-5	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11649405	3L_11649405_SNP [dm3] 3L_11656305_SNP [dm6]	A	G	1.171e^-5	0.803	UPSTREAM mir-274 INTRON CG32085
X	7584078	X_7584078_SNP [dm3] X_7690045_SNP [dm6]	A	T	1.202e^-5	0.803	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25261936	3R_25261936_SNP [dm3] 3R_29436214_SNP [dm6]	G	A	1.337e^-5	0.803	INTRON Ptp99A
2R	18361049	2R_18361049_SNP [dm3] 2R_22473544_SNP [dm6]	G	T	1.394e^-5	0.803	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
X	14824005	X_14824005_SNP [dm3] X_14929972_SNP [dm6]	G	A	1.440e^-5	0.803	UTR_5_PRIME Flo2 UPSTREAM Flo2 INTRON Flo2
3L	11649681	3L_11649681_SNP [dm3] 3L_11656581_SNP [dm6]	C	T	1.456e^-5	0.803	UPSTREAM mir-274 INTRON CG32085
3L	1385204	3L_1385204_SNP [dm3] 3L_1385204_SNP [dm6]	T	A	1.466e^-5	0.803	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
X	7769807	X_7769807_SNP [dm3] X_7875774_SNP [dm6]	C	T	1.494e^-5	0.803	INTRON Ir7c
3L	11649228	3L_11649228_SNP [dm3] 3L_11656128_SNP [dm6]	C	T	1.517e^-5	0.803	UPSTREAM mir-274 INTRON CG32085
2L	17497049	2L_17497049_SNP [dm3] 2L_17497049_SNP [dm6]	C	T	1.522e^-5	0.803	UTR_5_PRIME qua DOWNSTREAM CG15142 EXON CR45715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8347674	X_8347674_SNP [dm3] X_8453641_SNP [dm6]	T	C	1.596e^-5	0.803	INTRON org-1
3L	1666988	3L_1666988_SNP [dm3] 3L_1666988_SNP [dm6]	A	G	1.620e^-5	0.803	UPSTREAM snoRNA:Me28S-A2634c & 2 others DOWNSTREAM RpL23A & 1 other INTRON Uhg7	TF binding site BDTNP1_TFBS_z
3L	4513691	3L_4513691_SNP [dm3] 3L_4513691_SNP [dm6]	A	G	1.672e^-5	0.803	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3891955	X_3891955_SNP [dm3] X_3997922_SNP [dm6]	T	C	1.759e^-5	0.803	INTERGENIC
2L	22052815	2L_22052815_SNP [dm3] 2L_22052815_SNP [dm6]	A	C	1.787e^-5	0.803	INTERGENIC
X	6899896	X_6899896_SNP [dm3] X_7005863_SNP [dm6]	T	A	1.792e^-5	0.803	INTRON Inx7
2R	19502722	2R_19502722_SNP [dm3] 2R_23615199_SNP [dm6]	G	C	1.932e^-5	0.803	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
X	7770124	X_7770124_SNP [dm3] X_7876091_SNP [dm6]	T	C	1.998e^-5	0.803	SYNONYMOUS_CODING Ir7c DOWNSTREAM Ir7d
X	12810873	X_12810873_SNP [dm3] X_12916840_SNP [dm6]	C	A	2.031e^-5	0.803	UPSTREAM fne INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14343981	2L_14343981_SNP [dm3] 2L_14343981_SNP [dm6]	T	C	2.033e^-5	0.803	SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_cad
X	7851814	X_7851814_SNP [dm3] X_7957781_SNP [dm6]	C	T	2.042e^-5	0.803	SYNONYMOUS_CODING sws
2L	17496789	2L_17496789_SNP [dm3] 2L_17496789_SNP [dm6]	A	G	2.061e^-5	0.803	UTR_5_PRIME qua UPSTREAM CR45715	TF binding site BDTNP1_TFBS_dl
2R	15420401	2R_15420401_SNP [dm3] 2R_19532896_SNP [dm6]	C	T	2.070e^-5	0.803	INTRON sm
2L	1107504	2L_1107504_SNP [dm3] 2L_1107504_SNP [dm6]	G	A	2.094e^-5	0.803	SYNONYMOUS_CODING mtRNApol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	4406374	2R_4406374_SNP [dm3] 2R_8518869_SNP [dm6]	G	A	2.134e^-5	0.803	INTRON mtt
2R	4406385	2R_4406385_SNP [dm3] 2R_8518880_SNP [dm6]	T	C	2.134e^-5	0.803	INTRON mtt
2R	2927096	2R_2927096_SNP [dm3] 2R_7039591_SNP [dm6]	C	G	2.159e^-5	0.803	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
3L	11689492	3L_11689492_SNP [dm3] 3L_11696392_SNP [dm6]	G	A	2.250e^-5	0.803	UTR_5_PRIME CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6137174	3L_6137174_SNP [dm3] 3L_6144074_SNP [dm6]	A	T	2.261e^-5	0.803	UTR_3_PRIME Lcp65Ad UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad	TF binding site BDTNP1_TFBS_da
X	21918553	X_21918553_SNP [dm3] X_22516717_SNP [dm6]	A	G	2.271e^-5	0.803	INTRON CG17600	transposable element FlyBase
3R	16336171	3R_16336171_SNP [dm3] 3R_20510449_SNP [dm6]	G	C	2.397e^-5	0.828	UPSTREAM CG4288 INTRON CG4288
3L	603970	3L_603970_SNP [dm3] 3L_603970_SNP [dm6]	G	C	2.430e^-5	0.828	START_GAINED CG13893 UTR_5_PRIME CG13893	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7851547	X_7851547_SNP [dm3] X_7957514_SNP [dm6]	T	C	2.582e^-5	0.853	SYNONYMOUS_CODING sws DOWNSTREAM CG15330
X	7584074	X_7584074_INS [dm3] X_7690041_INS [dm6]	A	AGGGTAATA	2.592e^-5	0.853	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6137163	3L_6137163_SNP [dm3] 3L_6144063_SNP [dm6]	C	T	2.671e^-5	0.863	UTR_3_PRIME Lcp65Ad UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad	TF binding site BDTNP1_TFBS_da
3R	10013522	3R_10013522_SNP [dm3] 3R_14187800_SNP [dm6]	A	G	2.840e^-5	0.875	INTRON Dop1R1
2R	11777968	2R_11777968_SNP [dm3] 2R_15890463_SNP [dm6]	A	C	2.871e^-5	0.875	SYNONYMOUS_CODING sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5539813	X_5539813_SNP [dm3] X_5645780_SNP [dm6]	C	T	2.898e^-5	0.875	INTRON CG42492
3R	10013496	3R_10013496_SNP [dm3] 3R_14187774_SNP [dm6]	T	A	2.922e^-5	0.875	INTRON Dop1R1
3L	11649696	3L_11649696_SNP [dm3] 3L_11656596_SNP [dm6]	G	A	2.984e^-5	0.875	UPSTREAM mir-274 INTRON CG32085
X	18388782	X_18388782_SNP [dm3] X_18494749_SNP [dm6]	C	A	3.047e^-5	0.875	UPSTREAM CG15043 DOWNSTREAM GalNAc-T2 EXON CR45627	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	15212074	2R_15212074_INS [dm3] 2R_19324569_INS [dm6]	T	TT	3.051e^-5	0.875	INTRON Rgk1
2L	5682786	2L_5682786_SNP [dm3] 2L_5682786_SNP [dm6]	G	A	3.080e^-5	0.875	INTERGENIC
2R	6918847	2R_6918847_SNP [dm3] 2R_11031342_SNP [dm6]	A	C	3.171e^-5	0.883	INTRON luna
2R	4406290	2R_4406290_SNP [dm3] 2R_8518785_SNP [dm6]	C	G	3.201e^-5	0.883	INTRON mtt
2L	14355294	2L_14355294_SNP [dm3] 2L_14355294_SNP [dm6]	T	A	3.278e^-5	0.891	UTR_5_PRIME Rab14 UPSTREAM l_2_34Fd DOWNSTREAM CR44851	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13166394	2R_13166394_DEL [dm3] 2R_17278889_DEL [dm6]	TATGCATGTATATGTGT...	T	3.413e^-5	0.914	INTRON mbl
X	13512916	X_13512916_SNP [dm3] X_13618883_SNP [dm6]	T	G	3.469e^-5	0.916	NON_SYNONYMOUS_CODING Tango2 DOWNSTREAM CG2691
X	15249340	X_15249340_SNP [dm3] X_15355307_SNP [dm6]	A	T	3.649e^-5	0.936	INTRON acj6
2R	11708666	2R_11708666_SNP [dm3] 2R_15821161_SNP [dm6]	G	C	3.739e^-5	0.936	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3L	2560085	3L_2560085_SNP [dm3] 3L_2560085_SNP [dm6]	T	A	3.783e^-5	0.936	INTRON msn
2L	17550250	2L_17550250_SNP [dm3] 2L_17550250_SNP [dm6]	C	T	3.784e^-5	0.936	INTERGENIC
3R	20770921	3R_20770921_SNP [dm3] 3R_24945199_SNP [dm6]	C	T	3.833e^-5	0.936	UPSTREAM Nmnat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	3771981	X_3771981_SNP [dm3] X_3877948_SNP [dm6]	G	T	3.847e^-5	0.936	SYNONYMOUS_CODING CG2930 INTRON CG2930
X	7584093	X_7584093_SNP [dm3] X_7690060_SNP [dm6]	C	T	3.927e^-5	0.936	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14796642	X_14796642_SNP [dm3] X_14902609_SNP [dm6]	G	A	4.045e^-5	0.936	SYNONYMOUS_CODING CG9512 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3440023	2L_3440023_SNP [dm3] 2L_3440023_SNP [dm6]	T	C	4.046e^-5	0.936	INTERGENIC
3L	15299164	3L_15299164_SNP [dm3] 3L_15306064_SNP [dm6]	A	T	4.088e^-5	0.936	INTRON CG7255
2L	6277094	2L_6277094_SNP [dm3] 2L_6277094_SNP [dm6]	T	G	4.143e^-5	0.936	INTRON Ddr
X	20645164	X_20645164_INS [dm3] X_20774137_INS [dm6]	A	AGCA	4.256e^-5	0.936	INTRON shakB
X	15857022	X_15857022_SNP [dm3] X_15962989_SNP [dm6]	T	C	4.451e^-5	0.936	SPLICE_SITE_REGION mmd INTRON mmd
2R	12207845	2R_12207845_SNP [dm3] 2R_16320340_SNP [dm6]	A	G	4.469e^-5	0.936	SYNONYMOUS_CODING CG8060 DOWNSTREAM CG30096
2L	4351167	2L_4351167_SNP [dm3] 2L_4351167_SNP [dm6]	G	A	4.530e^-5	0.936	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11897616	X_11897616_SNP [dm3] X_12003583_SNP [dm6]	A	T	4.543e^-5	0.936	INTRON fw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10517453	3R_10517453_SNP [dm3] 3R_14691731_SNP [dm6]	C	T	4.549e^-5	0.936	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	13699280	2L_13699280_SNP [dm3] 2L_13699280_SNP [dm6]	A	T	4.571e^-5	0.936	INTRON CG31814	TF binding site mE1_TFBS_sbb
2L	21260021	2L_21260021_SNP [dm3] 2L_21260021_SNP [dm6]	T	A	4.580e^-5	0.936	DOWNSTREAM Hr39 INTERGENIC
2L	14575450	2L_14575450_SNP [dm3] 2L_14575450_SNP [dm6]	A	T	4.591e^-5	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	5357791	2R_5357791_SNP [dm3] 2R_9470286_SNP [dm6]	G	A	4.593e^-5	0.936	INTRON Camta
X	14824069	X_14824069_SNP [dm3] X_14930036_SNP [dm6]	G	C	4.682e^-5	0.936	UTR_5_PRIME Flo2 UPSTREAM Flo2 INTRON Flo2
X	5617055	X_5617055_SNP [dm3] X_5723022_SNP [dm6]	C	G	4.742e^-5	0.936	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad
2R	13952061	2R_13952061_SNP [dm3] 2R_18064556_SNP [dm6]	A	G	4.745e^-5	0.936	INTRON CG34386
3L	604609	3L_604609_INS [dm3] 3L_604609_INS [dm6]	A	AA	4.841e^-5	0.937	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	4761712	2L_4761712_SNP [dm3] 2L_4761712_SNP [dm6]	C	T	4.847e^-5	0.937	INTRON CG15630
3L	1666840	3L_1666840_SNP [dm3] 3L_1666840_SNP [dm6]	A	T	4.956e^-5	0.939	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
2L	1123431	2L_1123431_SNP [dm3] 2L_1123431_SNP [dm6]	G	A	4.958e^-5	0.939	INTRON Pino
3L	4511707	3L_4511707_SNP [dm3] 3L_4511707_SNP [dm6]	G	A	5.062e^-5	0.949	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2796256	2L_2796256_SNP [dm3] 2L_2796256_SNP [dm6]	C	T	5.179e^-5	0.952	UPSTREAM Syt1 INTRON Syt1
2L	19817031	2L_19817031_SNP [dm3] 2L_19817031_SNP [dm6]	A	T	5.204e^-5	0.952	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1121029	2L_1121029_SNP [dm3] 2L_1121029_SNP [dm6]	G	A	5.237e^-5	0.952	INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21867089	2L_21867089_SNP [dm3] 2L_21867089_SNP [dm6]	A	C	5.347e^-5	0.952	UPSTREAM CR44917 & 1 other INTRON CR44917 EXON CR44919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11265094	X_11265094_SNP [dm3] X_11371061_SNP [dm6]	C	G	5.438e^-5	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11265101	X_11265101_SNP [dm3] X_11371068_SNP [dm6]	T	A	5.438e^-5	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2586734	X_2586734_SNP [dm3] X_2692701_SNP [dm6]	C	A	5.470e^-5	0.952	UTR_3_PRIME per DOWNSTREAM CG2650
X	11265108	X_11265108_SNP [dm3] X_11371075_SNP [dm6]	T	C	5.514e^-5	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	6364166	3R_6364166_SNP [dm3] 3R_10538444_SNP [dm6]	A	T	5.616e^-5	0.952	INTRON hth
X	10823086	X_10823086_SNP [dm3] X_10929053_SNP [dm6]	A	G	5.793e^-5	0.952	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	4406161	2R_4406161_DEL [dm3] 2R_8518656_DEL [dm6]	GGCCT	G	6.022e^-5	0.952	INTRON mtt
2R	14265853	2R_14265853_INS [dm3] 2R_18378348_INS [dm6]	T	TT	6.050e^-5	0.952	DOWNSTREAM CR42736 INTERGENIC
2L	6461029	2L_6461029_SNP [dm3] 2L_6461029_SNP [dm6]	A	G	6.053e^-5	0.952	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6167091	3L_6167091_SNP [dm3] 3L_6173991_SNP [dm6]	A	T	6.089e^-5	0.952	UPSTREAM CG7376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	14164027	2R_14164027_SNP [dm3] 2R_18276522_SNP [dm6]	A	T	6.136e^-5	0.952	NON_SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17563128	2L_17563128_SNP [dm3] 2L_17563128_SNP [dm6]	A	T	6.252e^-5	0.952	INTERGENIC
3R	25262001	3R_25262001_SNP [dm3] 3R_29436279_SNP [dm6]	G	C	6.297e^-5	0.952	INTRON Ptp99A
2L	14574320	2L_14574320_SNP [dm3] 2L_14574320_SNP [dm6]	G	T	6.387e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6364165	3R_6364165_SNP [dm3] 3R_10538443_SNP [dm6]	G	T	6.482e^-5	0.952	INTRON hth
2R	4406198	2R_4406198_SNP [dm3] 2R_8518693_SNP [dm6]	T	A	6.551e^-5	0.952	INTRON mtt
2R	4466581	2R_4466581_SNP [dm3] 2R_8579076_SNP [dm6]	T	G	6.551e^-5	0.952	UPSTREAM CG42326 INTRON CG42326
3R	10517384	3R_10517384_SNP [dm3] 3R_14691662_SNP [dm6]	G	A	6.592e^-5	0.952	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2R	14660591	2R_14660591_SNP [dm3] 2R_18773086_SNP [dm6]	T	A	6.595e^-5	0.952	INTRON Mctp
2L	5938512	2L_5938512_SNP [dm3] 2L_5938512_SNP [dm6]	C	G	6.713e^-5	0.952	UTR_3_PRIME dsf	TF binding site mE1_TFBS_cad
2L	22054978	2L_22054978_SNP [dm3] 2L_22054978_SNP [dm6]	T	A	6.744e^-5	0.952	UPSTREAM CG34173 INTERGENIC
3L	6452915	3L_6452915_SNP [dm3] 3L_6459815_SNP [dm6]	T	C	6.890e^-5	0.952	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	14565312	2L_14565312_SNP [dm3] 2L_14565312_SNP [dm6]	C	T	6.932e^-5	0.952	INTERGENIC
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	6.987e^-5	0.952	INTRON CG42268
X	14107376	X_14107376_SNP [dm3] X_14213343_SNP [dm6]	G	A	7.016e^-5	0.952	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
2R	4467106	2R_4467106_SNP [dm3] 2R_8579601_SNP [dm6]	A	T	7.045e^-5	0.952	INTRON CG42326
3L	13623892	3L_13623892_SNP [dm3] 3L_13630792_SNP [dm6]	T	A	7.108e^-5	0.952	INTRON bru-3
2L	5507272	2L_5507272_SNP [dm3] 2L_5507272_SNP [dm6]	A	T	7.140e^-5	0.952	INTERGENIC
2R	13391998	2R_13391998_SNP [dm3] 2R_17504493_SNP [dm6]	T	G	7.318e^-5	0.952	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
3L	11648949	3L_11648949_SNP [dm3] 3L_11655849_SNP [dm6]	T	G	7.440e^-5	0.952	INTRON CG32085
2L	15285491	2L_15285491_SNP [dm3] 2L_15285491_SNP [dm6]	C	T	7.459e^-5	0.952	SYNONYMOUS_CODING CG15263
3L	12720144	3L_12720144_SNP [dm3] 3L_12727044_SNP [dm6]	C	G	7.527e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11668849	3L_11668849_SNP [dm3] 3L_11675749_SNP [dm6]	T	A	7.528e^-5	0.952	INTRON CG32085	TF binding site mE1_TFBS_cad
2R	8004845	2R_8004845_SNP [dm3] 2R_12117340_SNP [dm6]	G	A	7.837e^-5	0.952	SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18472218	3R_18472218_SNP [dm3] 3R_22646496_SNP [dm6]	T	C	7.904e^-5	0.952	INTRON CG45058
3L	3135756	3L_3135756_SNP [dm3] 3L_3135756_SNP [dm6]	T	C	7.926e^-5	0.952	INTRON CG11537
2R	3471854	2R_3471854_SNP [dm3] 2R_7584349_SNP [dm6]	A	G	8.136e^-5	0.952	UPSTREAM blow INTRON blow
X	14824025	X_14824025_INS [dm3] X_14929992_INS [dm6]	A	AA	8.224e^-5	0.952	UTR_5_PRIME Flo2 UPSTREAM Flo2 INTRON Flo2
2R	6875924	2R_6875924_SNP [dm3] 2R_10988419_SNP [dm6]	G	T	8.253e^-5	0.952	INTRON luna
2L	5813965	2L_5813965_SNP [dm3] 2L_5813965_SNP [dm6]	C	A	8.366e^-5	0.952	INTERGENIC
X	7584080	X_7584080_SNP [dm3] X_7690047_SNP [dm6]	G	A	8.381e^-5	0.952	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2394856	3L_2394856_SNP [dm3] 3L_2394856_SNP [dm6]	G	A	8.456e^-5	0.952	INTRON CG45186	TF binding site mE1_TFBS_cad
2L	1106089	2L_1106089_SNP [dm3] 2L_1106089_SNP [dm6]	A	G	8.463e^-5	0.952	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11265055	X_11265055_SNP [dm3] X_11371022_SNP [dm6]	C	T	8.563e^-5	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8003714	2R_8003714_SNP [dm3] 2R_12116209_SNP [dm6]	C	T	8.578e^-5	0.952	INTRON jeb
X	11195135	X_11195135_SNP [dm3] X_11301102_SNP [dm6]	T	A	8.650e^-5	0.952	INTRON CG44422
3L	2625732	3L_2625732_SNP [dm3] 3L_2625732_SNP [dm6]	A	T	8.660e^-5	0.952	INTRON Pxn
2L	4347483	2L_4347483_SNP [dm3] 2L_4347483_SNP [dm6]	C	A	8.808e^-5	0.952	UPSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7252692	2L_7252692_SNP [dm3] 2L_7252692_SNP [dm6]	A	T	8.823e^-5	0.952	NON_SYNONYMOUS_CODING CG13786 SPLICE_SITE_REGION CG13786
3L	6389213	3L_6389213_SNP [dm3] 3L_6396113_SNP [dm6]	G	T	8.853e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14580200	2L_14580200_SNP [dm3] 2L_14580200_SNP [dm6]	T	A	8.891e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25604200	3R_25604200_SNP [dm3] 3R_29778478_SNP [dm6]	G	C	8.919e^-5	0.952	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2L	1107040	2L_1107040_SNP [dm3] 2L_1107040_SNP [dm6]	T	C	9.079e^-5	0.952	NON_SYNONYMOUS_CODING mtRNApol
2L	14898043	2L_14898043_SNP [dm3] 2L_14898043_SNP [dm6]	T	C	9.154e^-5	0.952	INTERGENIC
2L	14575558	2L_14575558_SNP [dm3] 2L_14575558_SNP [dm6]	A	G	9.161e^-5	0.952	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	2926520	2R_2926520_SNP [dm3] 2R_7039015_SNP [dm6]	T	C	9.200e^-5	0.952	UTR_5_PRIME CG33914 UPSTREAM CR12842
3L	4083789	3L_4083789_SNP [dm3] 3L_4083789_SNP [dm6]	G	A	9.206e^-5	0.952	INTRON Gad1
2L	6270716	2L_6270716_SNP [dm3] 2L_6270716_SNP [dm6]	T	C	9.255e^-5	0.952	UPSTREAM CR42735 INTRON Ddr
3L	10284778	3L_10284778_SNP [dm3] 3L_10291678_SNP [dm6]	T	C	9.266e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10284846	3L_10284846_SNP [dm3] 3L_10291746_SNP [dm6]	T	C	9.292e^-5	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14432938	2L_14432938_DEL [dm3] 2L_14432938_DEL [dm6]	GG	G	9.381e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20201482	2R_20201482_SNP [dm3] 2R_24313959_SNP [dm6]	C	T	9.416e^-5	0.952	DOWNSTREAM betaTub60D INTERGENIC
X	19993318	X_19993318_SNP [dm3] X_20099285_SNP [dm6]	T	A	9.475e^-5	0.952	INTERGENIC
X	11971051	X_11971051_SNP [dm3] X_12077018_SNP [dm6]	A	G	9.487e^-5	0.952	INTRON CR43960 & 1 other
3L	3574592	3L_3574592_SNP [dm3] 3L_3574592_SNP [dm6]	A	T	9.683e^-5	0.952	INTRON Eip63E
2L	5689013	2L_5689013_SNP [dm3] 2L_5689013_SNP [dm6]	T	G	9.686e^-5	0.952	INTERGENIC
3L	6137128	3L_6137128_SNP [dm3] 3L_6144028_SNP [dm6]	C	T	9.710e^-5	0.952	UTR_3_PRIME Lcp65Ad UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad	TF binding site BDTNP1_TFBS_da
3L	10200856	3L_10200856_SNP [dm3] 3L_10207756_SNP [dm6]	G	A	9.751e^-5	0.952	INTERGENIC
2L	14902005	2L_14902005_SNP [dm3] 2L_14902005_SNP [dm6]	T	C	9.864e^-5	0.952	INTERGENIC
3L	2902577	3L_2902577_DEL [dm3] 3L_2902577_DEL [dm6]	TTACAGGTTT	T	9.923e^-5	0.952	INTRON Shab
3L	11668831	3L_11668831_SNP [dm3] 3L_11675731_SNP [dm6]	A	T	1.001e^-4	0.952	INTRON CG32085	TF binding site mE1_TFBS_cad
X	15192903	X_15192903_DEL [dm3] X_15298870_DEL [dm6]	AGCGTGAGTGGA...	A	1.002e^-4	0.952	UPSTREAM gce & 1 other INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9907822	3R_9907822_SNP [dm3] 3R_14082100_SNP [dm6]	A	G	1.004e^-4	0.952	UTR_3_PRIME foxo	TF binding site mE1_TFBS_HSA
2R	14660427	2R_14660427_SNP [dm3] 2R_18772922_SNP [dm6]	C	A	1.004e^-4	0.952	INTRON Mctp
2R	12160387	2R_12160387_SNP [dm3] 2R_16272882_SNP [dm6]	C	A	1.010e^-4	0.952	NON_SYNONYMOUS_CODING CG33017 UPSTREAM Khc	TF binding site mE1_TFBS_sens
3R	21850111	3R_21850111_SNP [dm3] 3R_26024389_SNP [dm6]	T	C	1.027e^-4	0.952	SYNONYMOUS_CODING E_spl_m4-BFM	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3687625	2R_3687625_SNP [dm3] 2R_7800120_SNP [dm6]	A	C	1.028e^-4	0.952	DOWNSTREAM Nop17l INTRON mus205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16299967	3L_16299967_SNP [dm3] 3L_16306867_SNP [dm6]	C	A	1.030e^-4	0.952	SYNONYMOUS_CODING CG13063 UPSTREAM CG13043 DOWNSTREAM CG13042
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	1.033e^-4	0.952	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	18602097	2L_18602097_SNP [dm3] 2L_18602097_SNP [dm6]	C	G	1.042e^-4	0.952	SYNONYMOUS_CODING CG10413	TF binding site mE1_TFBS_sens
2L	15285629	2L_15285629_SNP [dm3] 2L_15285629_SNP [dm6]	C	T	1.044e^-4	0.952	SYNONYMOUS_CODING CG15263
2R	13214539	2R_13214539_SNP [dm3] 2R_17327034_SNP [dm6]	A	G	1.048e^-4	0.952	INTRON mbl
X	7766992	X_7766992_SNP [dm3] X_7872959_SNP [dm6]	C	T	1.050e^-4	0.952	INTRON dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	17410828	X_17410828_DEL [dm3] X_17516795_DEL [dm6]	AA	A	1.058e^-4	0.952	INTRON CG43658
3L	1386217	3L_1386217_SNP [dm3] 3L_1386217_SNP [dm6]	C	T	1.062e^-4	0.952	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19505536	2R_19505536_SNP [dm3] 2R_23618013_SNP [dm6]	C	T	1.062e^-4	0.952	INTERGENIC
X	12370330	X_12370330_SNP [dm3] X_12476297_SNP [dm6]	A	C	1.068e^-4	0.952	INTRON CG42258
2L	1598163	2L_1598163_SNP [dm3] 2L_1598163_SNP [dm6]	C	T	1.069e^-4	0.952	INTRON haf & 1 other
X	13870863	X_13870863_SNP [dm3] X_13976830_SNP [dm6]	A	T	1.071e^-4	0.952	INTRON mamo
2R	13391793	2R_13391793_SNP [dm3] 2R_17504288_SNP [dm6]	T	G	1.073e^-4	0.952	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
2L	5496293	2L_5496293_SNP [dm3] 2L_5496293_SNP [dm6]	A	C	1.097e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	22070529	2L_22070529_INS [dm3] 2L_22070529_INS [dm6]	A	ATGCGAA	1.098e^-4	0.952	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase
2L	19470814	2L_19470814_SNP [dm3] 2L_19470814_SNP [dm6]	A	T	1.100e^-4	0.952	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2L	14401798	2L_14401798_SNP [dm3] 2L_14401798_SNP [dm6]	G	T	1.104e^-4	0.952	INTRON elB
2L	8330934	2L_8330934_SNP [dm3] 2L_8330934_SNP [dm6]	G	A	1.108e^-4	0.952	INTRON CG14275
3L	7925823	3L_7925823_SNP [dm3] 3L_7932723_SNP [dm6]	A	C	1.116e^-4	0.952	INTRON syd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18388787	X_18388787_SNP [dm3] X_18494754_SNP [dm6]	G	T	1.116e^-4	0.952	UPSTREAM CG15043 DOWNSTREAM GalNAc-T2 EXON CR45627	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	19402766	3R_19402766_DEL [dm3] 3R_23577044_DEL [dm6]	AA	A	1.121e^-4	0.952	INTRON beat-IV
X	5290814	X_5290814_DEL [dm3] X_5396781_DEL [dm6]	GG	G	1.123e^-4	0.952	UTR_3_PRIME SK INTRON SK
3L	13969432	3L_13969432_SNP [dm3] 3L_13976332_SNP [dm6]	T	A	1.124e^-4	0.952	SYNONYMOUS_CODING Hsc70-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15285725	2L_15285725_SNP [dm3] 2L_15285725_SNP [dm6]	G	C	1.129e^-4	0.952	SYNONYMOUS_CODING CG15263
X	16799273	X_16799273_SNP [dm3] X_16905240_SNP [dm6]	G	C	1.150e^-4	0.952	EXON CR44754
2R	11486013	2R_11486013_SNP [dm3] 2R_15598508_SNP [dm6]	A	T	1.154e^-4	0.952	INTERGENIC
2L	9911664	2L_9911664_SNP [dm3] 2L_9911664_SNP [dm6]	G	A	1.156e^-4	0.952	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	23574674	3R_23574674_SNP [dm3] 3R_27748952_SNP [dm6]	C	T	1.162e^-4	0.952	DOWNSTREAM Ets98B INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25261853	3R_25261853_SNP [dm3] 3R_29436131_SNP [dm6]	T	A	1.167e^-4	0.952	INTRON Ptp99A
X	5539812	X_5539812_SNP [dm3] X_5645779_SNP [dm6]	C	A	1.168e^-4	0.952	INTRON CG42492
2L	7252673	2L_7252673_SNP [dm3] 2L_7252673_SNP [dm6]	A	G	1.188e^-4	0.952	INTRON CG13786
3L	2550923	3L_2550923_SNP [dm3] 3L_2550923_SNP [dm6]	C	T	1.194e^-4	0.952	INTRON Spn
3L	1666896	3L_1666896_INS [dm3] 3L_1666896_INS [dm6]	T	TTAT	1.202e^-4	0.952	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM RpL23A & 1 other INTRON Uhg7 EXON snoRNA:Me28S-A2634a	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
3L	13624018	3L_13624018_SNP [dm3] 3L_13630918_SNP [dm6]	A	G	1.209e^-4	0.952	INTRON bru-3
2R	14228065	2R_14228065_SNP [dm3] 2R_18340560_SNP [dm6]	G	A	1.221e^-4	0.952	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3448965	3L_3448965_INS [dm3] 3L_3448965_INS [dm6]	A	AA	1.221e^-4	0.952	INTRON eIF5B
2L	13694901	2L_13694901_SNP [dm3] 2L_13694901_SNP [dm6]	T	C	1.223e^-4	0.952	INTRON CG31814
2L	16399273	2L_16399273_SNP [dm3] 2L_16399273_SNP [dm6]	T	C	1.228e^-4	0.952	DOWNSTREAM CG5888 INTERGENIC
3L	586244	3L_586244_SNP [dm3] 3L_586244_SNP [dm6]	G	C	1.228e^-4	0.952	INTRON Kah
3L	8312774	3L_8312774_SNP [dm3] 3L_8319674_SNP [dm6]	G	A	1.231e^-4	0.952	UPSTREAM CG43059 INTERGENIC
2R	4406415	2R_4406415_SNP [dm3] 2R_8518910_SNP [dm6]	G	A	1.232e^-4	0.952	INTRON mtt
2R	4406416	2R_4406416_SNP [dm3] 2R_8518911_SNP [dm6]	C	T	1.232e^-4	0.952	INTRON mtt
2R	14660125	2R_14660125_SNP [dm3] 2R_18772620_SNP [dm6]	G	A	1.249e^-4	0.952	SYNONYMOUS_CODING Mctp
3L	7925841	3L_7925841_SNP [dm3] 3L_7932741_SNP [dm6]	T	C	1.260e^-4	0.952	INTRON syd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12606492	2L_12606492_SNP [dm3] 2L_12606492_SNP [dm6]	A	G	1.263e^-4	0.952	INTRON nub	TF binding site BDTNP1_TFBS_da
3R	19153632	3R_19153632_SNP [dm3] 3R_23327910_SNP [dm6]	C	G	1.270e^-4	0.952	INTRON pnt
3L	10179410	3L_10179410_SNP [dm3] 3L_10186310_SNP [dm6]	C	G	1.270e^-4	0.952	UPSTREAM dpr10 INTERGENIC	TF binding site mE1_TFBS_Trl
X	14823848	X_14823848_SNP [dm3] X_14929815_SNP [dm6]	C	T	1.271e^-4	0.952	UTR_5_PRIME Flo2 UPSTREAM CG32591 & 1 other INTRON Flo2
X	20388439	X_20388439_SNP [dm3] X_20517412_SNP [dm6]	C	T	1.278e^-4	0.952	INTRON Tak1
2L	1598156	2L_1598156_SNP [dm3] 2L_1598156_SNP [dm6]	T	C	1.280e^-4	0.952	INTRON haf & 1 other
X	12431180	X_12431180_SNP [dm3] X_12537147_SNP [dm6]	C	A	1.280e^-4	0.952	INTRON CG43921
2R	5126584	2R_5126584_SNP [dm3] 2R_9239079_SNP [dm6]	A	G	1.282e^-4	0.952	UPSTREAM Cyp4p1 INTRON hig & 1 other
2L	13559466	2L_13559466_SNP [dm3] 2L_13559466_SNP [dm6]	G	A	1.288e^-4	0.952	INTRON kuz
2L	22053454	2L_22053454_SNP [dm3] 2L_22053454_SNP [dm6]	A	C	1.289e^-4	0.952	DOWNSTREAM CG34173 INTERGENIC	transposable element FlyBase
3L	10543442	3L_10543442_SNP [dm3] 3L_10550342_SNP [dm6]	G	A	1.294e^-4	0.952	INTRON A2bp1
2R	5349416	2R_5349416_SNP [dm3] 2R_9461911_SNP [dm6]	G	A	1.307e^-4	0.952	INTRON Camta
3L	835589	3L_835589_SNP [dm3] 3L_835589_SNP [dm6]	A	C	1.313e^-4	0.952	UPSTREAM CG42554 DOWNSTREAM CG42553 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5657869	2R_5657869_INS [dm3] 2R_9770364_INS [dm6]	T	TT	1.331e^-4	0.952	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18376286	2R_18376286_SNP [dm3] 2R_22488781_SNP [dm6]	G	A	1.338e^-4	0.952	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
2R	18376310	2R_18376310_SNP [dm3] 2R_22488805_SNP [dm6]	G	A	1.338e^-4	0.952	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
X	16616463	X_16616463_SNP [dm3] X_16722430_SNP [dm6]	G	C	1.339e^-4	0.952	NON_SYNONYMOUS_CODING CG32572	TF binding site mE1_TFBS_chinmo
X	16616478	X_16616478_SNP [dm3] X_16722445_SNP [dm6]	G	A	1.340e^-4	0.952	NON_SYNONYMOUS_CODING CG32572	TF binding site mE1_TFBS_chinmo
X	20321072	X_20321072_SNP [dm3] X_20450045_SNP [dm6]	C	T	1.352e^-4	0.952	INTRON CG32506
3L	1385639	3L_1385639_SNP [dm3] 3L_1385639_SNP [dm6]	A	T	1.355e^-4	0.952	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	1385695	3L_1385695_SNP [dm3] 3L_1385695_SNP [dm6]	T	A	1.355e^-4	0.952	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18363221	2R_18363221_SNP [dm3] 2R_22475716_SNP [dm6]	G	T	1.357e^-4	0.952	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
2L	14571514	2L_14571514_SNP [dm3] 2L_14571514_SNP [dm6]	A	C	1.373e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2903934	2R_2903934_SNP [dm3] 2R_7016429_SNP [dm6]	T	C	1.374e^-4	0.952	INTRON Tsp42Ee
2R	11709277	2R_11709277_SNP [dm3] 2R_15821772_SNP [dm6]	A	T	1.380e^-4	0.952	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
2L	20773361	2L_20773361_SNP [dm3] 2L_20773361_SNP [dm6]	A	G	1.398e^-4	0.952	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4406419	2R_4406419_SNP [dm3] 2R_8518914_SNP [dm6]	G	A	1.400e^-4	0.952	INTRON mtt
3L	10284834	3L_10284834_SNP [dm3] 3L_10291734_SNP [dm6]	T	C	1.404e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14580179	2L_14580179_SNP [dm3] 2L_14580179_SNP [dm6]	A	G	1.408e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19031415	2R_19031415_SNP [dm3] 2R_23143892_SNP [dm6]	A	T	1.409e^-4	0.952	NON_SYNONYMOUS_CODING Klp59D	TF binding site mE1_TFBS_cad
3L	11649800	3L_11649800_SNP [dm3] 3L_11656700_SNP [dm6]	A	G	1.409e^-4	0.952	UPSTREAM mir-274 INTRON CG32085
2L	11415052	2L_11415052_SNP [dm3] 2L_11415052_SNP [dm6]	C	A	1.409e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	2257666	3R_2257666_SNP [dm3] 3R_6431944_SNP [dm6]	C	T	1.410e^-4	0.952	INTRON gpp
X	7766928	X_7766928_SNP [dm3] X_7872895_SNP [dm6]	A	G	1.414e^-4	0.952	SYNONYMOUS_CODING dec-1 INTRON dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
3R	14170513	3R_14170513_SNP [dm3] 3R_18344791_SNP [dm6]	A	G	1.418e^-4	0.952	INTRON CG15803
2L	18609549	2L_18609549_SNP [dm3] 2L_18609549_SNP [dm6]	T	C	1.425e^-4	0.952	UTR_3_PRIME CG10333 DOWNSTREAM Atac2
2L	10915217	2L_10915217_SNP [dm3] 2L_10915217_SNP [dm6]	T	A	1.441e^-4	0.952	INTERGENIC
2L	5507326	2L_5507326_SNP [dm3] 2L_5507326_SNP [dm6]	T	A	1.443e^-4	0.952	INTERGENIC
2R	5126580	2R_5126580_SNP [dm3] 2R_9239075_SNP [dm6]	C	T	1.460e^-4	0.952	UPSTREAM Cyp4p1 INTRON hig & 1 other
X	21918637	X_21918637_SNP [dm3] X_22516801_SNP [dm6]	G	A	1.463e^-4	0.952	INTRON CG17600	transposable element FlyBase
2R	14658580	2R_14658580_SNP [dm3] 2R_18771075_SNP [dm6]	A	G	1.464e^-4	0.952	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2R	13204092	2R_13204092_SNP [dm3] 2R_17316587_SNP [dm6]	C	T	1.464e^-4	0.952	INTRON mbl
3L	2625719	3L_2625719_SNP [dm3] 3L_2625719_SNP [dm6]	T	C	1.471e^-4	0.952	INTRON Pxn
3L	11660508	3L_11660508_SNP [dm3] 3L_11667408_SNP [dm6]	T	A	1.480e^-4	0.952	INTRON CG32085
X	6641016	X_6641016_SNP [dm3] X_6746983_SNP [dm6]	C	T	1.503e^-4	0.952	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14910276	2L_14910276_SNP [dm3] 2L_14910276_SNP [dm6]	T	A	1.517e^-4	0.952	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4406404	2R_4406404_MNP [dm3] 2R_8518899_MNP [dm6]	TGG	AAA	1.524e^-4	0.952	INTRON mtt
2L	6454239	2L_6454239_SNP [dm3] 2L_6454239_SNP [dm6]	C	A	1.527e^-4	0.952	INTRON retm
2L	4419914	2L_4419914_SNP [dm3] 2L_4419914_SNP [dm6]	G	A	1.557e^-4	0.952	UPSTREAM tRNA:CR31963 INTRON CG15431
2L	22061488	2L_22061488_SNP [dm3] 2L_22061488_SNP [dm6]	G	T	1.565e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10200439	3L_10200439_INS [dm3] 3L_10207339_INS [dm6]	T	TATTAT	1.568e^-4	0.952	DOWNSTREAM CR44538 INTERGENIC
3L	6388014	3L_6388014_SNP [dm3] 3L_6394914_SNP [dm6]	A	C	1.574e^-4	0.952	INTERGENIC
2L	8662095	2L_8662095_SNP [dm3] 2L_8662095_SNP [dm6]	T	C	1.580e^-4	0.952	INTRON Sema-1a
3L	11184395	3L_11184395_SNP [dm3] 3L_11191295_SNP [dm6]	T	C	1.581e^-4	0.952	INTRON GlcAT-P
2R	4406126	2R_4406126_SNP [dm3] 2R_8518621_SNP [dm6]	T	A	1.583e^-4	0.952	INTRON mtt
X	7769894	X_7769894_SNP [dm3] X_7875861_SNP [dm6]	T	C	1.584e^-4	0.952	NON_SYNONYMOUS_CODING Ir7c
2L	19620088	2L_19620088_SNP [dm3] 2L_19620088_SNP [dm6]	A	G	1.585e^-4	0.952	INTRON Lar
2R	18189718	2R_18189718_SNP [dm3] 2R_22302213_SNP [dm6]	T	C	1.598e^-4	0.952	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
2L	2545252	2L_2545252_SNP [dm3] 2L_2545252_SNP [dm6]	T	A	1.603e^-4	0.952	INTERGENIC
3L	13969435	3L_13969435_SNP [dm3] 3L_13976335_SNP [dm6]	T	C	1.606e^-4	0.952	SYNONYMOUS_CODING Hsc70-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22074299	2L_22074299_SNP [dm3] 2L_22074299_SNP [dm6]	C	T	1.612e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	1.616e^-4	0.952	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	9340240	3L_9340240_SNP [dm3] 3L_9347140_SNP [dm6]	A	G	1.616e^-4	0.952	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	6264317	2L_6264317_SNP [dm3] 2L_6264317_SNP [dm6]	G	A	1.627e^-4	0.952	INTRON Ddr & 1 other	TF binding site mE1_TFBS_sens
X	14570801	X_14570801_SNP [dm3] X_14676768_SNP [dm6]	A	C	1.632e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8267514	2L_8267514_SNP [dm3] 2L_8267514_SNP [dm6]	C	T	1.633e^-4	0.952	INTRON Btk29A
2R	4406027	2R_4406027_SNP [dm3] 2R_8518522_SNP [dm6]	T	C	1.645e^-4	0.952	INTRON mtt
X	11265104	X_11265104_SNP [dm3] X_11371071_SNP [dm6]	C	A	1.651e^-4	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11265019	X_11265019_SNP [dm3] X_11370986_SNP [dm6]	A	T	1.656e^-4	0.952	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	887585	X_887585_SNP [dm3] X_993552_SNP [dm6]	G	T	1.661e^-4	0.952	INTERGENIC
2L	6758023	2L_6758023_SNP [dm3] 2L_6758023_SNP [dm6]	T	G	1.680e^-4	0.952	UTR_3_PRIME CG11322	TF binding site mE1_TFBS_cad
2L	1120403	2L_1120403_SNP [dm3] 2L_1120403_SNP [dm6]	T	C	1.683e^-4	0.952	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8532459	2R_8532459_INS [dm3] 2R_12644954_INS [dm6]	T	TA	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532464	2R_8532464_SNP [dm3] 2R_12644959_SNP [dm6]	A	T	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532468	2R_8532468_MNP [dm3] 2R_12644963_MNP [dm6]	AAC	TTT	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532471	2R_8532471_INS [dm3] 2R_12644966_INS [dm6]	A	ATTTATTT	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532473	2R_8532473_SNP [dm3] 2R_12644968_SNP [dm6]	C	T	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532474	2R_8532474_SNP [dm3] 2R_12644969_SNP [dm6]	A	T	1.684e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6641260	X_6641260_INS [dm3] X_6747227_INS [dm6]	T	TTGGCAT	1.687e^-4	0.952	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8269305	2L_8269305_SNP [dm3] 2L_8269305_SNP [dm6]	T	C	1.691e^-4	0.952	INTRON Btk29A
2L	11395946	2L_11395946_DEL [dm3] 2L_11395946_DEL [dm6]	TG	T	1.696e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs
2L	11395950	2L_11395950_DEL [dm3] 2L_11395950_DEL [dm6]	GAGGAGGAGCAGTGAAGA...	G	1.696e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs
2L	11395969	2L_11395969_SNP [dm3] 2L_11395969_SNP [dm6]	G	C	1.696e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs
2L	5508226	2L_5508226_SNP [dm3] 2L_5508226_SNP [dm6]	A	T	1.702e^-4	0.952	INTERGENIC
2R	3236434	2R_3236434_SNP [dm3] 2R_7348929_SNP [dm6]	G	A	1.702e^-4	0.952	SYNONYMOUS_CODING Dscam1
3L	3951902	3L_3951902_SNP [dm3] 3L_3951902_SNP [dm6]	T	A	1.723e^-4	0.952	INTRON CG14984	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14660814	2R_14660814_SNP [dm3] 2R_18773309_SNP [dm6]	G	A	1.734e^-4	0.952	SYNONYMOUS_CODING Mctp
2R	16688423	2R_16688423_SNP [dm3] 2R_20800918_SNP [dm6]	G	A	1.745e^-4	0.952	INTERGENIC
2R	2927239	2R_2927239_SNP [dm3] 2R_7039734_SNP [dm6]	C	A	1.751e^-4	0.952	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
2R	2927240	2R_2927240_SNP [dm3] 2R_7039735_SNP [dm6]	A	T	1.751e^-4	0.952	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
3R	20006089	3R_20006089_SNP [dm3] 3R_24180367_SNP [dm6]	A	T	1.754e^-4	0.952	SYNONYMOUS_CODING CG13606	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12393877	2L_12393877_SNP [dm3] 2L_12393877_SNP [dm6]	C	A	1.762e^-4	0.952	INTRON bru-2
3L	6452943	3L_6452943_SNP [dm3] 3L_6459843_SNP [dm6]	T	C	1.779e^-4	0.952	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	2550942	3L_2550942_SNP [dm3] 3L_2550942_SNP [dm6]	C	A	1.788e^-4	0.952	INTRON Spn
3R	26185358	3R_26185358_SNP [dm3] 3R_30359636_SNP [dm6]	T	C	1.790e^-4	0.952	INTRON hdc
2L	8075413	2L_8075413_SNP [dm3] 2L_8075413_SNP [dm6]	G	A	1.795e^-4	0.952	INTRON Mcr
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	1.796e^-4	0.952	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	8374703	3L_8374703_SNP [dm3] 3L_8381603_SNP [dm6]	C	G	1.809e^-4	0.952	INTRON ImpE1
2R	4406408	2R_4406408_SNP [dm3] 2R_8518903_SNP [dm6]	C	A	1.812e^-4	0.952	INTRON mtt
2L	5687973	2L_5687973_SNP [dm3] 2L_5687973_SNP [dm6]	A	G	1.816e^-4	0.952	INTERGENIC
2R	3677687	2R_3677687_SNP [dm3] 2R_7790182_SNP [dm6]	C	T	1.817e^-4	0.952	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
2L	10608870	2L_10608870_SNP [dm3] 2L_10608870_SNP [dm6]	T	C	1.824e^-4	0.952	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5687670	2L_5687670_SNP [dm3] 2L_5687670_SNP [dm6]	T	C	1.825e^-4	0.952	INTERGENIC
2L	14575400	2L_14575400_SNP [dm3] 2L_14575400_SNP [dm6]	C	T	1.825e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8532461	2R_8532461_SNP [dm3] 2R_12644956_SNP [dm6]	A	T	1.833e^-4	0.952	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6938591	2L_6938591_SNP [dm3] 2L_6938591_SNP [dm6]	T	C	1.836e^-4	0.952	NON_SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	16827429	2R_16827429_SNP [dm3] 2R_20939924_SNP [dm6]	T	C	1.836e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4513649	3L_4513649_SNP [dm3] 3L_4513649_SNP [dm6]	T	C	1.840e^-4	0.952	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13952078	2R_13952078_SNP [dm3] 2R_18064573_SNP [dm6]	C	T	1.844e^-4	0.952	INTRON CG34386
X	16616572	X_16616572_SNP [dm3] X_16722539_SNP [dm6]	G	A	1.861e^-4	0.952	SYNONYMOUS_CODING CG32572	TF binding site mE1_TFBS_chinmo
X	11290771	X_11290771_SNP [dm3] X_11396738_SNP [dm6]	A	T	1.866e^-4	0.952	INTRON dlg1
3R	25458790	3R_25458790_SNP [dm3] 3R_29633068_SNP [dm6]	G	T	1.872e^-4	0.952	INTRON Dop1R2	TF binding site mE1_TFBS_HSA
2R	14685697	2R_14685697_SNP [dm3] 2R_18798192_SNP [dm6]	G	A	1.874e^-4	0.952	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	2901890	2R_2901890_INS [dm3] 2R_7014385_INS [dm6]	A	CTATT	1.877e^-4	0.952	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13365634	3L_13365634_SNP [dm3] 3L_13372534_SNP [dm6]	A	T	1.883e^-4	0.952	INTERGENIC
3L	13100539	3L_13100539_SNP [dm3] 3L_13107439_SNP [dm6]	T	G	1.885e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	20187619	3R_20187619_SNP [dm3] 3R_24361897_SNP [dm6]	T	A	1.890e^-4	0.952	SYNONYMOUS_CODING CG33339 UPSTREAM CG5762
X	13674715	X_13674715_SNP [dm3] X_13780682_SNP [dm6]	T	A	1.891e^-4	0.952	INTRON CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17951494	2R_17951494_SNP [dm3] 2R_22063989_SNP [dm6]	C	A	1.893e^-4	0.952	INTRON Snp
2L	1112472	2L_1112472_SNP [dm3] 2L_1112472_SNP [dm6]	C	G	1.911e^-4	0.952	UPSTREAM CG14340 INTRON CG14339
2L	14580153	2L_14580153_SNP [dm3] 2L_14580153_SNP [dm6]	T	A	1.913e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1861290	2L_1861290_SNP [dm3] 2L_1861290_SNP [dm6]	T	C	1.914e^-4	0.952	INTRON CG31663
2L	21190487	2L_21190487_SNP [dm3] 2L_21190487_SNP [dm6]	T	A	1.918e^-4	0.952	INTRON Ret	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8533024	X_8533024_SNP [dm3] X_8638991_SNP [dm6]	T	G	1.920e^-4	0.952	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15718108	3L_15718108_SNP [dm3] 3L_15725008_SNP [dm6]	G	A	1.932e^-4	0.952	INTRON comm
2L	2325493	2L_2325493_DEL [dm3] 2L_2325493_DEL [dm6]	CAGATCC	C	1.933e^-4	0.952	INTRON CG9967 & 1 other
2R	11709403	2R_11709403_SNP [dm3] 2R_15821898_SNP [dm6]	T	C	1.957e^-4	0.952	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
2L	22048507	2L_22048507_SNP [dm3] 2L_22048507_SNP [dm6]	G	C	1.958e^-4	0.952	INTERGENIC	transposable element FlyBase
2L	14433833	2L_14433833_DEL [dm3] 2L_14433833_DEL [dm6]	ACAA	A	1.962e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	8700521	2L_8700521_SNP [dm3] 2L_8700521_SNP [dm6]	C	T	1.969e^-4	0.952	UPSTREAM Hnf4 INTRON Hnf4
2R	10475928	2R_10475928_SNP [dm3] 2R_14588423_SNP [dm6]	C	T	1.972e^-4	0.952	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	5126591	2R_5126591_SNP [dm3] 2R_9239086_SNP [dm6]	T	A	1.984e^-4	0.952	UPSTREAM Cyp4p1 INTRON hig & 1 other
3L	11433172	3L_11433172_SNP [dm3] 3L_11440072_SNP [dm6]	A	G	1.989e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16196906	3R_16196906_SNP [dm3] 3R_20371184_SNP [dm6]	G	A	1.992e^-4	0.952	INTERGENIC
2L	15371088	2L_15371088_SNP [dm3] 2L_15371088_SNP [dm6]	T	A	1.996e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23345875	3R_23345875_SNP [dm3] 3R_27520153_SNP [dm6]	T	A	2.006e^-4	0.952	UPSTREAM CG12885 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1666872	3L_1666872_SNP [dm3] 3L_1666872_SNP [dm6]	T	A	2.014e^-4	0.952	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
3L	11660505	3L_11660505_SNP [dm3] 3L_11667405_SNP [dm6]	A	G	2.014e^-4	0.952	INTRON CG32085
2L	4352423	2L_4352423_SNP [dm3] 2L_4352423_SNP [dm6]	T	A	2.015e^-4	0.952	UPSTREAM CG15429 DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17120601	X_17120601_SNP [dm3] X_17226568_SNP [dm6]	C	T	2.026e^-4	0.952	UTR_5_PRIME CG10598 UPSTREAM CG10598
2R	2871006	2R_2871006_SNP [dm3] 2R_6983501_SNP [dm6]	A	G	2.030e^-4	0.952	UPSTREAM CG30156 INTRON vimar & 1 other
2L	4355232	2L_4355232_SNP [dm3] 2L_4355232_SNP [dm6]	C	T	2.031e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1398529	3L_1398529_SNP [dm3] 3L_1398529_SNP [dm6]	T	G	2.036e^-4	0.952	UPSTREAM CG32320 DOWNSTREAM tRNA:E4:62Aa & 3 others INTRON Ptp61F
3R	24274181	3R_24274181_SNP [dm3] 3R_28448459_SNP [dm6]	A	G	2.036e^-4	0.952	INTRON beat-VI
3L	7318662	3L_7318662_SNP [dm3] 3L_7325562_SNP [dm6]	G	A	2.039e^-4	0.952	SYNONYMOUS_CODING Rint1 DOWNSTREAM CG8602	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2550926	3L_2550926_SNP [dm3] 3L_2550926_SNP [dm6]	C	T	2.040e^-4	0.952	INTRON Spn
2R	14660590	2R_14660590_SNP [dm3] 2R_18773085_SNP [dm6]	A	C	2.042e^-4	0.952	SPLICE_SITE_REGION Mctp INTRON Mctp
2L	22070537	2L_22070537_SNP [dm3] 2L_22070537_SNP [dm6]	C	A	2.050e^-4	0.952	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase
2L	18611774	2L_18611774_SNP [dm3] 2L_18611774_SNP [dm6]	G	A	2.053e^-4	0.952	SYNONYMOUS_CODING Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10953683	3L_10953683_SNP [dm3] 3L_10960583_SNP [dm6]	A	T	2.067e^-4	0.952	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7307357	3L_7307357_SNP [dm3] 3L_7314257_SNP [dm6]	T	G	2.076e^-4	0.952	INTERGENIC
3L	11650521	3L_11650521_SNP [dm3] 3L_11657421_SNP [dm6]	A	C	2.078e^-4	0.952	DOWNSTREAM mir-274 INTRON CG32085
2R	3356598	2R_3356598_SNP [dm3] 2R_7469093_SNP [dm6]	C	T	2.082e^-4	0.952	INTRON Aldh-III
X	7768013	X_7768013_SNP [dm3] X_7873980_SNP [dm6]	G	T	2.084e^-4	0.952	UPSTREAM dec-1 & 1 other DOWNSTREAM CR43615 INTERGENIC
X	14570763	X_14570763_SNP [dm3] X_14676730_SNP [dm6]	G	T	2.086e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3359440	2R_3359440_SNP [dm3] 2R_7471935_SNP [dm6]	T	G	2.090e^-4	0.952	INTRON Aldh-III
X	20388309	X_20388309_DEL [dm3] X_20517282_DEL [dm6]	TG	A	2.091e^-4	0.952	INTRON Tak1
X	7766862	X_7766862_SNP [dm3] X_7872829_SNP [dm6]	C	G	2.102e^-4	0.952	SYNONYMOUS_CODING dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	7766962	X_7766962_SNP [dm3] X_7872929_SNP [dm6]	G	A	2.102e^-4	0.952	SPLICE_SITE_REGION dec-1 INTRON dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	7766970	X_7766970_SNP [dm3] X_7872937_SNP [dm6]	T	G	2.102e^-4	0.952	INTRON dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	7767037	X_7767037_SNP [dm3] X_7873004_SNP [dm6]	A	G	2.102e^-4	0.952	SYNONYMOUS_CODING dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
2L	22159133	2L_22159133_DEL [dm3] 2L_22159133_DEL [dm6]	AGAA	A	2.105e^-4	0.952	UTR_3_PRIME CG42748 INTRON CG42748
3L	607637	3L_607637_SNP [dm3] 3L_607637_SNP [dm6]	C	T	2.105e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14908321	2L_14908321_DEL [dm3] 2L_14908321_DEL [dm6]	TTGGGATCT	T	2.112e^-4	0.952	UTR_3_PRIME CG42313
X	12960328	X_12960328_SNP [dm3] X_13066295_SNP [dm6]	A	C	2.112e^-4	0.952	INTRON rad
X	7766313	X_7766313_SNP [dm3] X_7872280_SNP [dm6]	T	C	2.114e^-4	0.952	SYNONYMOUS_CODING dec-1 UPSTREAM CR43615	TF binding site mE1_TFBS_chinmo
2L	8661897	2L_8661897_SNP [dm3] 2L_8661897_SNP [dm6]	G	A	2.134e^-4	0.952	INTRON Sema-1a
2L	7176018	2L_7176018_SNP [dm3] 2L_7176018_SNP [dm6]	C	T	2.136e^-4	0.952	INTERGENIC
X	3473593	X_3473593_SNP [dm3] X_3579560_SNP [dm6]	C	T	2.139e^-4	0.952	INTRON AstA-R1
2L	14401743	2L_14401743_DEL [dm3] 2L_14401743_DEL [dm6]	GG	G	2.143e^-4	0.952	INTRON elB
2L	1114933	2L_1114933_SNP [dm3] 2L_1114933_SNP [dm6]	A	G	2.154e^-4	0.952	UTR_3_PRIME Pino DOWNSTREAM CG14340
3L	19277061	3L_19277061_SNP [dm3] 3L_19283961_SNP [dm6]	G	A	2.163e^-4	0.952	SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2R	16083869	2R_16083869_SNP [dm3] 2R_20196364_SNP [dm6]	G	A	2.164e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7767002	X_7767002_SNP [dm3] X_7872969_SNP [dm6]	G	A	2.168e^-4	0.952	INTRON dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	7244126	X_7244126_SNP [dm3] X_7350093_SNP [dm6]	G	A	2.195e^-4	0.952	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19505717	2R_19505717_SNP [dm3] 2R_23618194_SNP [dm6]	T	A	2.201e^-4	0.952	INTERGENIC
X	21918557	X_21918557_SNP [dm3] X_22516721_SNP [dm6]	G	T	2.202e^-4	0.952	INTRON CG17600	transposable element FlyBase
3L	10224099	3L_10224099_SNP [dm3] 3L_10230999_SNP [dm6]	C	T	2.209e^-4	0.952	INTERGENIC
X	8427461	X_8427461_DEL [dm3] X_8533428_DEL [dm6]	GATG	G	2.210e^-4	0.952	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14433862	2L_14433862_SNP [dm3] 2L_14433862_SNP [dm6]	T	C	2.212e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	8267831	2L_8267831_SNP [dm3] 2L_8267831_SNP [dm6]	G	C	2.218e^-4	0.952	INTRON Btk29A	TF binding site mE1_TFBS_D
2L	6699717	2L_6699717_SNP [dm3] 2L_6699717_SNP [dm6]	G	A	2.218e^-4	0.952	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11649382	3L_11649382_SNP [dm3] 3L_11656282_SNP [dm6]	T	C	2.227e^-4	0.952	UPSTREAM mir-274 INTRON CG32085
X	4604899	X_4604899_SNP [dm3] X_4710866_SNP [dm6]	T	G	2.230e^-4	0.952	INTRON Proc-R
2R	16533003	2R_16533003_SNP [dm3] 2R_20645498_SNP [dm6]	C	T	2.232e^-4	0.952	SYNONYMOUS_CODING DMAP1 UPSTREAM Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21917446	X_21917446_SNP [dm3] X_22515610_SNP [dm6]	A	G	2.238e^-4	0.952	UPSTREAM CR43962 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5938671	2L_5938671_SNP [dm3] 2L_5938671_SNP [dm6]	A	T	2.249e^-4	0.952	UTR_3_PRIME dsf	TF binding site mE1_TFBS_cad
3L	6174499	3L_6174499_SNP [dm3] 3L_6181399_SNP [dm6]	C	T	2.258e^-4	0.952	SYNONYMOUS_CODING CG10274 DOWNSTREAM D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	5496906	2L_5496906_SNP [dm3] 2L_5496906_SNP [dm6]	A	T	2.260e^-4	0.952	INTERGENIC
2R	4406399	2R_4406399_SNP [dm3] 2R_8518894_SNP [dm6]	T	A	2.262e^-4	0.952	INTRON mtt
X	4604680	X_4604680_SNP [dm3] X_4710647_SNP [dm6]	T	C	2.275e^-4	0.952	INTRON Proc-R
X	4604812	X_4604812_SNP [dm3] X_4710779_SNP [dm6]	G	A	2.275e^-4	0.952	INTRON Proc-R
X	7767097	X_7767097_SNP [dm3] X_7873064_SNP [dm6]	A	G	2.275e^-4	0.952	SYNONYMOUS_CODING dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
3L	661148	3L_661148_SNP [dm3] 3L_661148_SNP [dm6]	C	A	2.286e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27043781	3R_27043781_SNP [dm3] 3R_31218059_SNP [dm6]	T	C	2.288e^-4	0.952	UPSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	17526429	2R_17526429_SNP [dm3] 2R_21638924_SNP [dm6]	G	A	2.302e^-4	0.952	DOWNSTREAM CG10321 INTERGENIC
2R	20197938	2R_20197938_SNP [dm3] 2R_24310415_SNP [dm6]	T	C	2.303e^-4	0.952	INTRON betaTub60D
X	13197140	X_13197140_SNP [dm3] X_13303107_SNP [dm6]	T	A	2.304e^-4	0.952	UPSTREAM CG1764 & 2 others INTERGENIC
3L	12804870	3L_12804870_SNP [dm3] 3L_12811770_SNP [dm6]	G	T	2.307e^-4	0.952	NON_SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad
2R	3677701	2R_3677701_SNP [dm3] 2R_7790196_SNP [dm6]	C	A	2.307e^-4	0.952	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
2R	4104516	2R_4104516_SNP [dm3] 2R_8217011_SNP [dm6]	A	G	2.309e^-4	0.952	NON_SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad
X	4604875	X_4604875_SNP [dm3] X_4710842_SNP [dm6]	G	A	2.310e^-4	0.952	INTRON Proc-R
X	4604880	X_4604880_DEL [dm3] X_4710847_DEL [dm6]	TTAA	T	2.310e^-4	0.952	INTRON Proc-R
3L	6210043	3L_6210043_SNP [dm3] 3L_6216943_SNP [dm6]	A	T	2.314e^-4	0.952	INTRON LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14401759	2L_14401759_SNP [dm3] 2L_14401759_SNP [dm6]	T	C	2.315e^-4	0.952	INTRON elB
2L	7515453	2L_7515453_SNP [dm3] 2L_7515453_SNP [dm6]	C	T	2.315e^-4	0.952	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	12212829	2R_12212829_INS [dm3] 2R_16325324_INS [dm6]	G	GGA	2.316e^-4	0.952	UTR_3_PRIME Vha44 DOWNSTREAM CG4282 & 1 other
3L	8312772	3L_8312772_SNP [dm3] 3L_8319672_SNP [dm6]	G	A	2.322e^-4	0.952	UPSTREAM CG43059 INTERGENIC
3R	21602385	3R_21602385_SNP [dm3] 3R_25776663_SNP [dm6]	A	G	2.327e^-4	0.952	SYNONYMOUS_CODING CG17195 UPSTREAM CG17196 DOWNSTREAM CG4956
2R	19340123	2R_19340123_SNP [dm3] 2R_23452600_SNP [dm6]	A	G	2.328e^-4	0.952	INTRON CG43795
2L	14360079	2L_14360079_SNP [dm3] 2L_14360079_SNP [dm6]	G	T	2.331e^-4	0.952	NON_SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18363371	2R_18363371_SNP [dm3] 2R_22475866_SNP [dm6]	T	C	2.333e^-4	0.952	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
3L	12720156	3L_12720156_SNP [dm3] 3L_12727056_SNP [dm6]	T	G	2.334e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3909130	2R_3909130_SNP [dm3] 2R_8021625_SNP [dm6]	C	T	2.334e^-4	0.952	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19820177	2L_19820177_SNP [dm3] 2L_19820177_SNP [dm6]	G	T	2.345e^-4	0.952	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21397030	2L_21397030_SNP [dm3] 2L_21397030_SNP [dm6]	G	A	2.345e^-4	0.952	INTERGENIC
X	8329069	X_8329069_SNP [dm3] X_8435036_SNP [dm6]	G	A	2.347e^-4	0.952	SYNONYMOUS_CODING CG12125	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7307389	3L_7307389_SNP [dm3] 3L_7314289_SNP [dm6]	C	T	2.351e^-4	0.952	INTERGENIC
3R	16806879	3R_16806879_SNP [dm3] 3R_20981157_SNP [dm6]	T	C	2.354e^-4	0.952	INTRON Calx
2R	2916467	2R_2916467_INS [dm3] 2R_7028962_INS [dm6]	C	GCAA	2.355e^-4	0.952	UTR_5_PRIME Tsp42Eg DOWNSTREAM Tsp42Ef
2L	10837383	2L_10837383_SNP [dm3] 2L_10837383_SNP [dm6]	C	G	2.358e^-4	0.952	UTR_5_PRIME Nos DOWNSTREAM CG6700
2R	6822141	2R_6822141_SNP [dm3] 2R_10934636_SNP [dm6]	G	T	2.360e^-4	0.952	INTERGENIC
X	7766838	X_7766838_SNP [dm3] X_7872805_SNP [dm6]	T	C	2.361e^-4	0.952	SYNONYMOUS_CODING dec-1 UPSTREAM CR43615	TF binding site mE1_TFBS_chinmo
X	6095729	X_6095729_SNP [dm3] X_6201696_SNP [dm6]	T	G	2.369e^-4	0.952	INTRON vanin-like
2R	11772830	2R_11772830_SNP [dm3] 2R_15885325_SNP [dm6]	T	A	2.369e^-4	0.952	INTRON sli	TF binding site mE1_TFBS_sens
2R	2369087	2R_2369087_SNP [dm3] 2R_6481582_SNP [dm6]	C	T	2.372e^-4	0.952	INTERGENIC
3R	18530473	3R_18530473_SNP [dm3] 3R_22704751_SNP [dm6]	G	A	2.377e^-4	0.952	SYNONYMOUS_CODING CG13842 DOWNSTREAM CG6972
2L	12356342	2L_12356342_SNP [dm3] 2L_12356342_SNP [dm6]	C	A	2.382e^-4	0.952	UPSTREAM CG17010 INTRON bru-2
X	4533661	X_4533661_SNP [dm3] X_4639628_SNP [dm6]	A	G	2.383e^-4	0.952	SYNONYMOUS_CODING CG3081 DOWNSTREAM pon	TF binding site mE1_TFBS_chinmo
3L	18264351	3L_18264351_SNP [dm3] 3L_18271251_SNP [dm6]	C	T	2.388e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	10558851	2L_10558851_SNP [dm3] 2L_10558851_SNP [dm6]	G	A	2.404e^-4	0.952	INTRON Trim9
X	14542040	X_14542040_SNP [dm3] X_14648007_SNP [dm6]	A	T	2.406e^-4	0.952	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	17666690	3R_17666690_SNP [dm3] 3R_21840968_SNP [dm6]	T	A	2.414e^-4	0.952	INTERGENIC
3L	5794533	3L_5794533_SNP [dm3] 3L_5801433_SNP [dm6]	A	G	2.418e^-4	0.952	INTRON S6k	TF binding site mE1_TFBS_cad
X	20493983	X_20493983_SNP [dm3] X_20622956_SNP [dm6]	C	A	2.419e^-4	0.952	INTRON RunxA
X	8532600	X_8532600_SNP [dm3] X_8638567_SNP [dm6]	A	G	2.420e^-4	0.952	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	10088379	3L_10088379_INS [dm3] 3L_10095279_INS [dm6]	T	TA	2.420e^-4	0.952	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2L	19059100	2L_19059100_INS [dm3] 2L_19059100_INS [dm6]	A	AA	2.421e^-4	0.952	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
2R	3274513	2R_3274513_SNP [dm3] 2R_7387008_SNP [dm6]	C	G	2.422e^-4	0.952	UTR_5_PRIME cos UPSTREAM CG11107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	7909910	X_7909910_SNP [dm3] X_8015877_SNP [dm6]	T	C	2.424e^-4	0.952	INTRON Tbh
X	21210652	X_21210652_SNP [dm3] X_21339625_SNP [dm6]	A	G	2.428e^-4	0.952	START_GAINED tty UTR_5_PRIME tty UPSTREAM fliI & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	15389511	2R_15389511_SNP [dm3] 2R_19502006_SNP [dm6]	T	G	2.430e^-4	0.952	UPSTREAM CG16926 INTERGENIC
2L	10227705	2L_10227705_SNP [dm3] 2L_10227705_SNP [dm6]	C	T	2.449e^-4	0.952	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1114935	2L_1114935_SNP [dm3] 2L_1114935_SNP [dm6]	T	C	2.450e^-4	0.952	UTR_3_PRIME Pino DOWNSTREAM CG14340
2L	4621168	2L_4621168_DEL [dm3] 2L_4621168_DEL [dm6]	TACGTACCCCTTTT...	T	2.453e^-4	0.952	DOWNSTREAM CR44609 INTERGENIC
X	4925417	X_4925417_SNP [dm3] X_5031384_SNP [dm6]	A	G	2.454e^-4	0.952	INTRON CR44833
X	15249300	X_15249300_SNP [dm3] X_15355267_SNP [dm6]	C	T	2.457e^-4	0.952	INTRON acj6
2L	14432880	2L_14432880_SNP [dm3] 2L_14432880_SNP [dm6]	G	C	2.461e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3787701	2L_3787701_SNP [dm3] 2L_3787701_SNP [dm6]	T	C	2.470e^-4	0.952	INTRON CG3921	TF binding site mE1_TFBS_Trl
2R	2712515	2R_2712515_SNP [dm3] 2R_6825010_SNP [dm6]	A	T	2.475e^-4	0.952	INTERGENIC
2L	10915215	2L_10915215_SNP [dm3] 2L_10915215_SNP [dm6]	A	T	2.478e^-4	0.952	INTERGENIC
2R	7368958	2R_7368958_SNP [dm3] 2R_11481453_SNP [dm6]	T	A	2.481e^-4	0.952	INTRON inv
2L	14340196	2L_14340196_SNP [dm3] 2L_14340196_SNP [dm6]	T	G	2.483e^-4	0.952	DOWNSTREAM CG15286 INTRON CG33090
2L	21256933	2L_21256933_SNP [dm3] 2L_21256933_SNP [dm6]	A	G	2.493e^-4	0.952	DOWNSTREAM Hr39 INTRON Hr39
2L	12125013	2L_12125013_SNP [dm3] 2L_12125013_SNP [dm6]	G	A	2.499e^-4	0.952	UTR_5_PRIME CG17211
3L	10200398	3L_10200398_SNP [dm3] 3L_10207298_SNP [dm6]	A	G	2.502e^-4	0.952	DOWNSTREAM CR44538 INTERGENIC
X	5512524	X_5512524_SNP [dm3] X_5618491_SNP [dm6]	G	A	2.510e^-4	0.952	DOWNSTREAM Mlc-c INTRON RhoGAP5A	TF binding site mE1_TFBS_chinmo
3L	4141666	3L_4141666_SNP [dm3] 3L_4141666_SNP [dm6]	C	T	2.515e^-4	0.952	UPSTREAM CG32260 DOWNSTREAM Ras64B INTRON Akh
2R	11709184	2R_11709184_SNP [dm3] 2R_15821679_SNP [dm6]	T	A	2.528e^-4	0.952	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3L	14395920	3L_14395920_SNP [dm3] 3L_14402820_SNP [dm6]	T	A	2.529e^-4	0.952	UPSTREAM CG3868 DOWNSTREAM stwl INTERGENIC
X	15696085	X_15696085_SNP [dm3] X_15802052_SNP [dm6]	G	C	2.535e^-4	0.952	NON_SYNONYMOUS_CODING PGRP-LE	TF binding site mE1_TFBS_HSA
X	4604785	X_4604785_SNP [dm3] X_4710752_SNP [dm6]	A	G	2.536e^-4	0.952	INTRON Proc-R
X	17848998	X_17848998_SNP [dm3] X_17954965_SNP [dm6]	C	T	2.542e^-4	0.952	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12362917	2L_12362917_SNP [dm3] 2L_12362917_SNP [dm6]	G	A	2.551e^-4	0.952	INTRON bru-2
X	10823056	X_10823056_SNP [dm3] X_10929023_SNP [dm6]	C	G	2.551e^-4	0.952	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19820043	2L_19820043_SNP [dm3] 2L_19820043_SNP [dm6]	G	A	2.558e^-4	0.952	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19470776	2L_19470776_SNP [dm3] 2L_19470776_SNP [dm6]	G	A	2.559e^-4	0.952	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
3R	10517412	3R_10517412_SNP [dm3] 3R_14691690_SNP [dm6]	T	C	2.561e^-4	0.952	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
X	9916026	X_9916026_DEL [dm3] X_10021993_DEL [dm6]	TT	T	2.561e^-4	0.952	INTRON Cht6
3R	26642118	3R_26642118_SNP [dm3] 3R_30816396_SNP [dm6]	C	G	2.562e^-4	0.952	INTRON cindr
X	9915465	X_9915465_INS [dm3] X_10021432_INS [dm6]	T	TGTAT	2.568e^-4	0.952	INTRON Cht6
X	14785530	X_14785530_INS [dm3] X_14891497_INS [dm6]	A	AA	2.572e^-4	0.952	INTRON Flo2 & 1 other
2L	14469924	2L_14469924_SNP [dm3] 2L_14469924_SNP [dm6]	G	C	2.573e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15853888	X_15853888_SNP [dm3] X_15959855_SNP [dm6]	C	T	2.580e^-4	0.952	INTRON mmd	TF binding site mE1_TFBS_inv
2L	7175928	2L_7175928_SNP [dm3] 2L_7175928_SNP [dm6]	G	A	2.584e^-4	0.952	INTERGENIC
2R	2416764	2R_2416764_SNP [dm3] 2R_6529259_SNP [dm6]	A	G	2.586e^-4	0.952	INTRON jing	TF binding site mE1_TFBS_cad
2L	22068187	2L_22068187_SNP [dm3] 2L_22068187_SNP [dm6]	T	C	2.594e^-4	0.952	INTERGENIC	transposable element FlyBase
3L	19064503	3L_19064503_SNP [dm3] 3L_19071403_SNP [dm6]	T	C	2.597e^-4	0.952	INTRON Mkp3
3L	11432885	3L_11432885_SNP [dm3] 3L_11439785_SNP [dm6]	C	T	2.599e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3770022	2L_3770022_SNP [dm3] 2L_3770022_SNP [dm6]	G	T	2.601e^-4	0.952	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3439043	2L_3439043_SNP [dm3] 2L_3439043_SNP [dm6]	T	C	2.607e^-4	0.952	INTERGENIC
3L	2550872	3L_2550872_SNP [dm3] 3L_2550872_SNP [dm6]	G	C	2.621e^-4	0.952	INTRON Spn
2R	3677708	2R_3677708_SNP [dm3] 2R_7790203_SNP [dm6]	C	G	2.621e^-4	0.952	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
2L	1619460	2L_1619460_SNP [dm3] 2L_1619460_SNP [dm6]	T	C	2.628e^-4	0.952	EXON CR44603
3L	1384345	3L_1384345_SNP [dm3] 3L_1384345_SNP [dm6]	G	T	2.638e^-4	0.952	INTRON Ptp61F & 1 other
3L	1384406	3L_1384406_SNP [dm3] 3L_1384406_SNP [dm6]	T	A	2.638e^-4	0.952	INTRON Ptp61F & 1 other
2R	9662540	2R_9662540_SNP [dm3] 2R_13775035_SNP [dm6]	T	C	2.642e^-4	0.952	SYNONYMOUS_CODING Cpr50Ca
3L	13357325	3L_13357325_SNP [dm3] 3L_13364225_SNP [dm6]	C	T	2.644e^-4	0.952	INTERGENIC
3L	4511684	3L_4511684_INS [dm3] 3L_4511684_INS [dm6]	T	TGTTT	2.649e^-4	0.952	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6160727	3L_6160727_SNP [dm3] 3L_6167627_SNP [dm6]	C	T	2.666e^-4	0.952	UTR_3_PRIME CG10289
2R	2925560	2R_2925560_SNP [dm3] 2R_7038055_SNP [dm6]	T	C	2.667e^-4	0.952	UTR_5_PRIME CG33914 UPSTREAM CG33914
X	8328945	X_8328945_SNP [dm3] X_8434912_SNP [dm6]	T	C	2.672e^-4	0.952	SYNONYMOUS_CODING CG12125	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8375149	3L_8375149_SNP [dm3] 3L_8382049_SNP [dm6]	A	G	2.672e^-4	0.952	INTRON ImpE1
2R	13287183	2R_13287183_SNP [dm3] 2R_17399678_SNP [dm6]	G	A	2.676e^-4	0.952	INTRON Sip1
2R	18791730	2R_18791730_SNP [dm3] 2R_22904207_SNP [dm6]	G	C	2.676e^-4	0.952	UTR_5_PRIME nahoda
3L	1386445	3L_1386445_SNP [dm3] 3L_1386445_SNP [dm6]	T	A	2.686e^-4	0.952	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	24280739	3R_24280739_SNP [dm3] 3R_28455017_SNP [dm6]	T	A	2.691e^-4	0.952	INTRON beat-VI
2R	4406428	2R_4406428_SNP [dm3] 2R_8518923_SNP [dm6]	C	T	2.701e^-4	0.952	INTRON mtt
2L	1971933	2L_1971933_SNP [dm3] 2L_1971933_SNP [dm6]	G	T	2.702e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	11432882	3L_11432882_SNP [dm3] 3L_11439782_SNP [dm6]	A	G	2.709e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16417551	2L_16417551_SNP [dm3] 2L_16417551_SNP [dm6]	G	A	2.711e^-4	0.952	DOWNSTREAM snoRNA:Me28S-A2958 INTRON CG5888	TF binding site mE1_TFBS_inv
2R	4406412	2R_4406412_SNP [dm3] 2R_8518907_SNP [dm6]	G	T	2.724e^-4	0.952	INTRON mtt
2R	8005083	2R_8005083_SNP [dm3] 2R_12117578_SNP [dm6]	T	G	2.727e^-4	0.952	NON_SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19157374	3L_19157374_SNP [dm3] 3L_19164274_SNP [dm6]	T	C	2.728e^-4	0.952	INTRON fz2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18021651	2R_18021651_INS [dm3] 2R_22134146_INS [dm6]	T	TAGA	2.737e^-4	0.952	INTERGENIC
2R	14658612	2R_14658612_SNP [dm3] 2R_18771107_SNP [dm6]	A	G	2.741e^-4	0.952	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	1182924	3L_1182924_SNP [dm3] 3L_1182924_SNP [dm6]	A	T	2.742e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	3894992	X_3894992_SNP [dm3] X_4000959_SNP [dm6]	G	A	2.752e^-4	0.952	DOWNSTREAM CR43298 INTERGENIC
2L	6460089	2L_6460089_SNP [dm3] 2L_6460089_SNP [dm6]	G	C	2.753e^-4	0.952	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1384325	3L_1384325_SNP [dm3] 3L_1384325_SNP [dm6]	G	A	2.761e^-4	0.952	INTRON Ptp61F & 1 other
X	18309162	X_18309162_SNP [dm3] X_18415129_SNP [dm6]	T	C	2.763e^-4	0.952	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
2R	13388142	2R_13388142_SNP [dm3] 2R_17500637_SNP [dm6]	T	A	2.766e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4620257	2L_4620257_SNP [dm3] 2L_4620257_SNP [dm6]	A	G	2.766e^-4	0.952	EXON CR44609
2R	17978984	2R_17978984_SNP [dm3] 2R_22091479_SNP [dm6]	G	C	2.771e^-4	0.952	UPSTREAM CG43393 & 1 other DOWNSTREAM CG11073 INTERGENIC
2R	17978987	2R_17978987_DEL [dm3] 2R_22091482_DEL [dm6]	CT	A	2.771e^-4	0.952	UPSTREAM CG43393 & 1 other DOWNSTREAM CG11073 INTERGENIC
2R	20197982	2R_20197982_SNP [dm3] 2R_24310459_SNP [dm6]	G	A	2.772e^-4	0.952	INTRON betaTub60D
2R	11779367	2R_11779367_DEL [dm3] 2R_15891862_DEL [dm6]	TACAAACCCAAAATTACATT...	T	2.775e^-4	0.952	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	2926927	2R_2926927_SNP [dm3] 2R_7039422_SNP [dm6]	T	A	2.780e^-4	0.952	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
2L	10150746	2L_10150746_SNP [dm3] 2L_10150746_SNP [dm6]	C	T	2.781e^-4	0.952	SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	13405946	2R_13405946_SNP [dm3] 2R_17518441_SNP [dm6]	T	A	2.790e^-4	0.952	UPSTREAM APC10 DOWNSTREAM CG4853 & 1 other INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2625718	3L_2625718_SNP [dm3] 3L_2625718_SNP [dm6]	A	T	2.793e^-4	0.952	INTRON Pxn
2R	19505719	2R_19505719_SNP [dm3] 2R_23618196_SNP [dm6]	A	T	2.803e^-4	0.952	INTERGENIC
2R	3236435	2R_3236435_SNP [dm3] 2R_7348930_SNP [dm6]	C	A	2.805e^-4	0.952	SYNONYMOUS_CODING Dscam1
2R	14658556	2R_14658556_SNP [dm3] 2R_18771051_SNP [dm6]	G	C	2.805e^-4	0.952	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2R	17978948	2R_17978948_SNP [dm3] 2R_22091443_SNP [dm6]	C	A	2.811e^-4	0.952	UPSTREAM CG43393 & 1 other DOWNSTREAM CG11073 INTERGENIC
X	4604788	X_4604788_SNP [dm3] X_4710755_SNP [dm6]	C	A	2.812e^-4	0.952	INTRON Proc-R
2L	7635020	2L_7635020_SNP [dm3] 2L_7635020_SNP [dm6]	C	T	2.817e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17432463	2R_17432463_SNP [dm3] 2R_21544958_SNP [dm6]	G	C	2.817e^-4	0.952	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15390965	3R_15390965_SNP [dm3] 3R_19565243_SNP [dm6]	C	T	2.818e^-4	0.952	INTRON Dys
3R	15390966	3R_15390966_SNP [dm3] 3R_19565244_SNP [dm6]	T	A	2.818e^-4	0.952	INTRON Dys
3R	8153930	3R_8153930_SNP [dm3] 3R_12328208_SNP [dm6]	T	C	2.822e^-4	0.952	DOWNSTREAM CR45584 INTERGENIC
2L	14575115	2L_14575115_SNP [dm3] 2L_14575115_SNP [dm6]	C	G	2.835e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3911188	2L_3911188_SNP [dm3] 2L_3911188_SNP [dm6]	A	G	2.835e^-4	0.952	SYNONYMOUS_CODING fred UTR_3_PRIME fred DOWNSTREAM CG31773
3L	1384410	3L_1384410_SNP [dm3] 3L_1384410_SNP [dm6]	A	C	2.843e^-4	0.952	INTRON Ptp61F & 1 other
3L	4511696	3L_4511696_SNP [dm3] 3L_4511696_SNP [dm6]	C	T	2.845e^-4	0.952	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4406422	2R_4406422_SNP [dm3] 2R_8518917_SNP [dm6]	C	A	2.849e^-4	0.952	INTRON mtt
2R	7368953	2R_7368953_SNP [dm3] 2R_11481448_SNP [dm6]	T	A	2.857e^-4	0.953	INTRON inv
2R	19505742	2R_19505742_SNP [dm3] 2R_23618219_SNP [dm6]	G	C	2.863e^-4	0.953	INTERGENIC
X	12370317	X_12370317_SNP [dm3] X_12476284_SNP [dm6]	G	A	2.871e^-4	0.954	INTRON CG42258
2R	19505745	2R_19505745_SNP [dm3] 2R_23618222_SNP [dm6]	G	A	2.879e^-4	0.954	INTERGENIC
3L	5522995	3L_5522995_SNP [dm3] 3L_5529895_SNP [dm6]	C	G	2.883e^-4	0.954	UPSTREAM Lkr INTERGENIC
2L	14355321	2L_14355321_SNP [dm3] 2L_14355321_SNP [dm6]	T	C	2.885e^-4	0.954	UTR_5_PRIME Rab14 UPSTREAM l_2_34Fd DOWNSTREAM CR44851	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13491865	3L_13491865_SNP [dm3] 3L_13498765_SNP [dm6]	C	A	2.890e^-4	0.954	INTRON Tgi
2L	1118829	2L_1118829_SNP [dm3] 2L_1118829_SNP [dm6]	A	T	2.906e^-4	0.957	UTR_5_PRIME Pino INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	19810329	2L_19810329_SNP [dm3] 2L_19810329_SNP [dm6]	C	T	2.930e^-4	0.962	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16492776	2R_16492776_SNP [dm3] 2R_20605271_SNP [dm6]	C	T	2.941e^-4	0.962	SYNONYMOUS_CODING bl UPSTREAM mir-7	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2354904	2R_2354904_SNP [dm3] 2R_6467399_SNP [dm6]	T	A	2.942e^-4	0.962	INTERGENIC	transposable element FlyBase
2L	16810282	2L_16810282_SNP [dm3] 2L_16810282_SNP [dm6]	T	A	2.944e^-4	0.962	INTRON CG13280 & 1 other
3R	21393375	3R_21393375_SNP [dm3] 3R_25567653_SNP [dm6]	A	C	2.950e^-4	0.962	INTRON msi
X	14817986	X_14817986_SNP [dm3] X_14923953_SNP [dm6]	A	T	2.953e^-4	0.962	UPSTREAM CG9503 INTRON Flo2
X	14360322	X_14360322_SNP [dm3] X_14466289_SNP [dm6]	C	T	2.958e^-4	0.962	INTERGENIC
3L	6137208	3L_6137208_SNP [dm3] 3L_6144108_SNP [dm6]	A	T	2.962e^-4	0.962	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11969995	2L_11969995_SNP [dm3] 2L_11969995_SNP [dm6]	T	G	2.967e^-4	0.962	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2887737	3L_2887737_INS [dm3] 3L_2887737_INS [dm6]	C	CGC	2.981e^-4	0.962	INTRON spz5
X	21918163	X_21918163_SNP [dm3] X_22516327_SNP [dm6]	G	T	2.988e^-4	0.962	INTRON CG17600
2L	4420080	2L_4420080_SNP [dm3] 2L_4420080_SNP [dm6]	T	C	2.992e^-4	0.962	INTRON CG15431
2L	12669020	2L_12669020_SNP [dm3] 2L_12669020_SNP [dm6]	G	T	2.995e^-4	0.962	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13559605	2L_13559605_SNP [dm3] 2L_13559605_SNP [dm6]	G	A	2.999e^-4	0.962	INTRON kuz
2R	3911095	2R_3911095_SNP [dm3] 2R_8023590_SNP [dm6]	C	T	3.009e^-4	0.962	EXON CR45267
3L	12301029	3L_12301029_SNP [dm3] 3L_12307929_SNP [dm6]	C	G	3.009e^-4	0.962	INTERGENIC
2L	8267237	2L_8267237_SNP [dm3] 2L_8267237_SNP [dm6]	C	A	3.012e^-4	0.962	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	8718149	2L_8718149_SNP [dm3] 2L_8718149_SNP [dm6]	G	A	3.012e^-4	0.962	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14902003	2L_14902003_SNP [dm3] 2L_14902003_SNP [dm6]	T	C	3.019e^-4	0.962	INTERGENIC
2L	964059	2L_964059_SNP [dm3] 2L_964059_SNP [dm6]	T	A	3.031e^-4	0.962	INTERGENIC
2L	964066	2L_964066_SNP [dm3] 2L_964066_SNP [dm6]	G	A	3.031e^-4	0.962	INTERGENIC
3R	9552840	3R_9552840_SNP [dm3] 3R_13727118_SNP [dm6]	T	C	3.033e^-4	0.962	INTRON CG34383
2R	17027871	2R_17027871_SNP [dm3] 2R_21140366_SNP [dm6]	A	T	3.042e^-4	0.963	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3031712	3L_3031712_SNP [dm3] 3L_3031712_SNP [dm6]	A	G	3.053e^-4	0.963	INTERGENIC
3L	11649492	3L_11649492_SNP [dm3] 3L_11656392_SNP [dm6]	T	A	3.056e^-4	0.963	UPSTREAM mir-274 INTRON CG32085
2R	14658648	2R_14658648_INS [dm3] 2R_18771143_INS [dm6]	C	TCTTGT	3.063e^-4	0.963	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	10749997	3L_10749997_SNP [dm3] 3L_10756897_SNP [dm6]	A	C	3.064e^-4	0.963	INTERGENIC
2L	22046476	2L_22046476_SNP [dm3] 2L_22046476_SNP [dm6]	T	C	3.070e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11649799	3L_11649799_SNP [dm3] 3L_11656699_SNP [dm6]	A	G	3.072e^-4	0.963	UPSTREAM mir-274 INTRON CG32085
2L	1146492	2L_1146492_SNP [dm3] 2L_1146492_SNP [dm6]	G	A	3.080e^-4	0.964	INTRON MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11522550	2R_11522550_SNP [dm3] 2R_15635045_SNP [dm6]	C	T	3.133e^-4	0.972	INTRON CG42524
3L	6390103	3L_6390103_SNP [dm3] 3L_6397003_SNP [dm6]	T	A	3.139e^-4	0.972	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	19088136	3L_19088136_SNP [dm3] 3L_19095036_SNP [dm6]	C	T	3.139e^-4	0.972	UTR_3_PRIME CG11577 DOWNSTREAM MESR6
2L	19817000	2L_19817000_SNP [dm3] 2L_19817000_SNP [dm6]	T	C	3.143e^-4	0.972	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	11709407	2R_11709407_SNP [dm3] 2R_15821902_SNP [dm6]	T	A	3.145e^-4	0.972	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
X	17628606	X_17628606_SNP [dm3] X_17734573_SNP [dm6]	A	T	3.148e^-4	0.972	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	25261241	3R_25261241_SNP [dm3] 3R_29435519_SNP [dm6]	A	G	3.162e^-4	0.972	INTRON Ptp99A
2L	1991776	2L_1991776_SNP [dm3] 2L_1991776_SNP [dm6]	C	A	3.167e^-4	0.972	NON_SYNONYMOUS_CODING Obp22a DOWNSTREAM CR42874
3R	26696061	3R_26696061_SNP [dm3] 3R_30870339_SNP [dm6]	A	T	3.177e^-4	0.972	DOWNSTREAM CG15545 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	11919166	2L_11919166_SNP [dm3] 2L_11919166_SNP [dm6]	A	T	3.188e^-4	0.972	INTRON Pde1c
X	14083842	X_14083842_SNP [dm3] X_14189809_SNP [dm6]	G	A	3.189e^-4	0.972	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
X	10070226	X_10070226_SNP [dm3] X_10176193_SNP [dm6]	G	T	3.192e^-4	0.972	INTRON CG43902 & 1 other
3L	10953796	3L_10953796_SNP [dm3] 3L_10960696_SNP [dm6]	G	A	3.193e^-4	0.972	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1121875	2L_1121875_SNP [dm3] 2L_1121875_SNP [dm6]	A	G	3.199e^-4	0.972	INTRON Pino
3L	885761	3L_885761_DEL [dm3] 3L_885761_DEL [dm6]	GAAGCTTC	A	3.203e^-4	0.972	INTRON CG32479
2L	14580146	2L_14580146_SNP [dm3] 2L_14580146_SNP [dm6]	A	T	3.204e^-4	0.972	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19194661	2L_19194661_SNP [dm3] 2L_19194661_SNP [dm6]	T	C	3.212e^-4	0.972	INTRON drl	regulatory region REDfly_CRMs
3R	6359099	3R_6359099_SNP [dm3] 3R_10533377_SNP [dm6]	A	G	3.214e^-4	0.972	INTRON hth
X	14118220	X_14118220_SNP [dm3] X_14224187_SNP [dm6]	A	G	3.221e^-4	0.972	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM CG11674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10284851	3L_10284851_SNP [dm3] 3L_10291751_SNP [dm6]	A	C	3.223e^-4	0.972	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6486847	X_6486847_SNP [dm3] X_6592814_SNP [dm6]	T	C	3.224e^-4	0.972	INTRON Pat1 EXON CR43832
3L	11689230	3L_11689230_SNP [dm3] 3L_11696130_SNP [dm6]	G	C	3.224e^-4	0.972	DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	3.225e^-4	0.972	INTERGENIC
2L	18439052	2L_18439052_SNP [dm3] 2L_18439052_SNP [dm6]	C	T	3.236e^-4	0.973	INTERGENIC
X	17628582	X_17628582_SNP [dm3] X_17734549_SNP [dm6]	A	G	3.240e^-4	0.973	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2L	4353858	2L_4353858_SNP [dm3] 2L_4353858_SNP [dm6]	G	T	3.247e^-4	0.973	UTR_3_PRIME CG15429	TF binding site BDTNP1_TFBS_prd
2L	14911347	2L_14911347_SNP [dm3] 2L_14911347_SNP [dm6]	C	T	3.250e^-4	0.973	INTRON CG42313
X	7244039	X_7244039_SNP [dm3] X_7350006_SNP [dm6]	T	G	3.256e^-4	0.973	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	6095784	X_6095784_SNP [dm3] X_6201751_SNP [dm6]	G	T	3.260e^-4	0.973	INTRON vanin-like
X	15432020	X_15432020_SNP [dm3] X_15537987_SNP [dm6]	G	A	3.271e^-4	0.973	INTRON Ac13E	TF binding site mE1_TFBS_cad
3L	7927801	3L_7927801_DEL [dm3] 3L_7934701_DEL [dm6]	GAATTTCTATAG...	G	3.284e^-4	0.973	UPSTREAM syd INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20198045	2R_20198045_SNP [dm3] 2R_24310522_SNP [dm6]	T	C	3.290e^-4	0.973	INTRON betaTub60D
2R	5126578	2R_5126578_SNP [dm3] 2R_9239073_SNP [dm6]	A	G	3.290e^-4	0.973	UPSTREAM Cyp4p1 INTRON hig & 1 other
3L	11649436	3L_11649436_SNP [dm3] 3L_11656336_SNP [dm6]	A	T	3.293e^-4	0.973	UPSTREAM mir-274 INTRON CG32085
3R	24274476	3R_24274476_SNP [dm3] 3R_28448754_SNP [dm6]	T	A	3.297e^-4	0.973	INTRON beat-VI
2R	3359969	2R_3359969_SNP [dm3] 2R_7472464_SNP [dm6]	T	G	3.298e^-4	0.973	INTRON Aldh-III	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4591408	2L_4591408_SNP [dm3] 2L_4591408_SNP [dm6]	T	C	3.305e^-4	0.973	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	22046844	2L_22046844_SNP [dm3] 2L_22046844_SNP [dm6]	A	T	3.314e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	26695835	3R_26695835_SNP [dm3] 3R_30870113_SNP [dm6]	T	C	3.317e^-4	0.973	DOWNSTREAM Cpr100A & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	11800459	2R_11800459_SNP [dm3] 2R_15912954_SNP [dm6]	C	T	3.319e^-4	0.973	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	5663026	2R_5663026_DEL [dm3] 2R_9775521_DEL [dm6]	ACGGTTA	A	3.322e^-4	0.973	INTRON CG1688 EXON CR44207
2L	5684208	2L_5684208_SNP [dm3] 2L_5684208_SNP [dm6]	T	C	3.339e^-4	0.975	INTERGENIC
2R	4406420	2R_4406420_SNP [dm3] 2R_8518915_SNP [dm6]	C	A	3.349e^-4	0.975	INTRON mtt
2L	7176013	2L_7176013_SNP [dm3] 2L_7176013_SNP [dm6]	C	G	3.354e^-4	0.975	INTERGENIC
3R	24927282	3R_24927282_SNP [dm3] 3R_29101560_SNP [dm6]	G	T	3.378e^-4	0.975	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11649519	3L_11649519_SNP [dm3] 3L_11656419_SNP [dm6]	C	T	3.380e^-4	0.975	UPSTREAM mir-274 INTRON CG32085
2L	6361817	2L_6361817_SNP [dm3] 2L_6361817_SNP [dm6]	C	G	3.387e^-4	0.975	DOWNSTREAM CR44778 INTERGENIC
3L	5726439	3L_5726439_SNP [dm3] 3L_5733339_SNP [dm6]	C	G	3.398e^-4	0.975	INTRON sif
2R	11779449	2R_11779449_SNP [dm3] 2R_15891944_SNP [dm6]	C	A	3.400e^-4	0.975	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3788248	2L_3788248_SNP [dm3] 2L_3788248_SNP [dm6]	G	T	3.419e^-4	0.975	INTRON CG3921
2L	19832119	2L_19832119_SNP [dm3] 2L_19832119_SNP [dm6]	A	T	3.420e^-4	0.975	INTRON sick
X	11971200	X_11971200_DEL [dm3] X_12077167_DEL [dm6]	TTAAGC	A	3.422e^-4	0.975	UTR_5_PRIME Ten-a EXON CR43960
X	13932986	X_13932986_SNP [dm3] X_14038953_SNP [dm6]	T	A	3.423e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12160380	2R_12160380_SNP [dm3] 2R_16272875_SNP [dm6]	T	A	3.427e^-4	0.975	SYNONYMOUS_CODING CG33017 UPSTREAM Khc	TF binding site mE1_TFBS_sens
2R	12160404	2R_12160404_SNP [dm3] 2R_16272899_SNP [dm6]	C	T	3.427e^-4	0.975	SYNONYMOUS_CODING CG33017 UPSTREAM Khc	TF binding site mE1_TFBS_sens
3L	10200403	3L_10200403_SNP [dm3] 3L_10207303_SNP [dm6]	T	C	3.428e^-4	0.975	DOWNSTREAM CR44538 INTERGENIC
3L	4391719	3L_4391719_SNP [dm3] 3L_4391719_SNP [dm6]	G	A	3.433e^-4	0.975	INTRON slow	TF binding site mE1_TFBS_cad
2L	5939554	2L_5939554_SNP [dm3] 2L_5939554_SNP [dm6]	T	A	3.438e^-4	0.975	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
2L	1107780	2L_1107780_SNP [dm3] 2L_1107780_SNP [dm6]	A	G	3.443e^-4	0.975	UPSTREAM CG14339 INTRON mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2R	7991412	2R_7991412_SNP [dm3] 2R_12103907_SNP [dm6]	G	A	3.450e^-4	0.975	INTRON jeb
2L	12669047	2L_12669047_SNP [dm3] 2L_12669047_SNP [dm6]	G	A	3.451e^-4	0.975	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9475137	X_9475137_SNP [dm3] X_9581104_SNP [dm6]	T	A	3.451e^-4	0.975	DOWNSTREAM CR45540 INTERGENIC
2L	8674441	2L_8674441_SNP [dm3] 2L_8674441_SNP [dm6]	G	A	3.452e^-4	0.975	INTRON Glt	TF binding site mE1_TFBS_cad
2L	22055659	2L_22055659_SNP [dm3] 2L_22055659_SNP [dm6]	C	G	3.452e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14434469	2L_14434469_SNP [dm3] 2L_14434469_SNP [dm6]	G	C	3.453e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	11709274	2R_11709274_SNP [dm3] 2R_15821769_SNP [dm6]	C	T	3.463e^-4	0.976	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
2L	5814278	2L_5814278_SNP [dm3] 2L_5814278_SNP [dm6]	G	T	3.468e^-4	0.976	INTERGENIC
X	14343043	X_14343043_SNP [dm3] X_14449010_SNP [dm6]	T	G	3.476e^-4	0.976	INTRON dpr8
3R	4882801	3R_4882801_SNP [dm3] 3R_9057079_SNP [dm6]	C	G	3.483e^-4	0.976	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	4022918	2R_4022918_SNP [dm3] 2R_8135413_SNP [dm6]	T	C	3.488e^-4	0.976	UPSTREAM Obp44a INTERGENIC
2L	6784764	2L_6784764_SNP [dm3] 2L_6784764_SNP [dm6]	G	A	3.488e^-4	0.976	INTRON nrv1
3L	11432805	3L_11432805_SNP [dm3] 3L_11439705_SNP [dm6]	C	T	3.492e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4739050	3L_4739050_SNP [dm3] 3L_4739050_SNP [dm6]	T	C	3.497e^-4	0.976	INTRON RhoGEF64C
2L	1107585	2L_1107585_SNP [dm3] 2L_1107585_SNP [dm6]	T	C	3.506e^-4	0.977	SYNONYMOUS_CODING mtRNApol UPSTREAM CG14339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
X	2339673	X_2339673_SNP [dm3] X_2445640_SNP [dm6]	G	A	3.521e^-4	0.978	INTRON boi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24272351	3R_24272351_SNP [dm3] 3R_28446629_SNP [dm6]	C	A	3.522e^-4	0.978	INTRON beat-VI
2R	2911930	2R_2911930_SNP [dm3] 2R_7024425_SNP [dm6]	C	A	3.526e^-4	0.978	UPSTREAM Tsp42Ef & 1 other INTERGENIC
3R	22214134	3R_22214134_SNP [dm3] 3R_26388412_SNP [dm6]	C	T	3.540e^-4	0.98	INTERGENIC
3L	2116514	3L_2116514_SNP [dm3] 3L_2116514_SNP [dm6]	C	T	3.545e^-4	0.98	UPSTREAM sls DOWNSTREAM zormin INTERGENIC
2R	6982489	2R_6982489_SNP [dm3] 2R_11094984_SNP [dm6]	T	C	3.580e^-4	0.984	INTRON luna	TF binding site mE1_TFBS_sens
3L	11475662	3L_11475662_SNP [dm3] 3L_11482562_SNP [dm6]	C	A	3.582e^-4	0.984	INTERGENIC
2R	6882807	2R_6882807_SNP [dm3] 2R_10995302_SNP [dm6]	C	T	3.589e^-4	0.984	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14658650	2R_14658650_SNP [dm3] 2R_18771145_SNP [dm6]	A	T	3.603e^-4	0.984	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2R	2394811	2R_2394811_SNP [dm3] 2R_6507306_SNP [dm6]	G	T	3.603e^-4	0.984	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6194789	3L_6194789_SNP [dm3] 3L_6201689_SNP [dm6]	T	G	3.608e^-4	0.984	NON_SYNONYMOUS_CODING CG8219	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24274227	3R_24274227_SNP [dm3] 3R_28448505_SNP [dm6]	T	A	3.613e^-4	0.984	INTRON beat-VI
3L	12805339	3L_12805339_SNP [dm3] 3L_12812239_SNP [dm6]	T	A	3.619e^-4	0.984	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5684203	2L_5684203_SNP [dm3] 2L_5684203_SNP [dm6]	C	G	3.624e^-4	0.984	INTERGENIC
2L	19811422	2L_19811422_SNP [dm3] 2L_19811422_SNP [dm6]	A	G	3.626e^-4	0.984	DOWNSTREAM snRNA:U4:38AB & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15730257	X_15730257_SNP [dm3] X_15836224_SNP [dm6]	C	A	3.626e^-4	0.984	UPSTREAM Chc INTRON CG32582
2L	10791103	2L_10791103_SNP [dm3] 2L_10791103_SNP [dm6]	T	C	3.628e^-4	0.984	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
2R	4023193	2R_4023193_SNP [dm3] 2R_8135688_SNP [dm6]	T	C	3.628e^-4	0.984	UPSTREAM Obp44a INTERGENIC
2L	19813524	2L_19813524_DEL [dm3] 2L_19813524_DEL [dm6]	ACATTAG	A	3.678e^-4	0.992	DOWNSTREAM CG13962 & 1 other INTRON sick
2L	12669023	2L_12669023_SNP [dm3] 2L_12669023_SNP [dm6]	T	A	3.679e^-4	0.992	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3473843	X_3473843_SNP [dm3] X_3579810_SNP [dm6]	G	A	3.682e^-4	0.992	INTRON AstA-R1
X	18894086	X_18894086_SNP [dm3] X_19000053_SNP [dm6]	T	C	3.694e^-4	0.992	INTRON CG43759
3L	13623907	3L_13623907_SNP [dm3] 3L_13630807_SNP [dm6]	C	T	3.697e^-4	0.992	INTRON bru-3
2L	1124684	2L_1124684_SNP [dm3] 2L_1124684_SNP [dm6]	G	T	3.699e^-4	0.992	INTRON Pino	TF binding site mE1_TFBS_HSA
3R	14717733	3R_14717733_SNP [dm3] 3R_18892011_SNP [dm6]	T	C	3.701e^-4	0.992	INTERGENIC
X	11967350	X_11967350_SNP [dm3] X_12073317_SNP [dm6]	C	T	3.708e^-4	0.992	UPSTREAM CG12721 INTRON CR43960 & 1 other
3L	11649448	3L_11649448_SNP [dm3] 3L_11656348_SNP [dm6]	T	C	3.714e^-4	0.992	UPSTREAM mir-274 INTRON CG32085
3L	3260632	3L_3260632_SNP [dm3] 3L_3260632_SNP [dm6]	C	T	3.730e^-4	0.992	INTRON ckd
X	16967144	X_16967144_SNP [dm3] X_17073111_SNP [dm6]	T	C	3.732e^-4	0.992	NON_SYNONYMOUS_CODING CG8949	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12394061	2L_12394061_SNP [dm3] 2L_12394061_SNP [dm6]	C	A	3.735e^-4	0.992	INTRON bru-2
3L	5081775	3L_5081775_SNP [dm3] 3L_5081775_SNP [dm6]	C	T	3.744e^-4	0.992	INTERGENIC
2R	2926496	2R_2926496_SNP [dm3] 2R_7038991_SNP [dm6]	A	C	3.749e^-4	0.992	UTR_5_PRIME CG33914 UPSTREAM CR12842
2R	13223276	2R_13223276_SNP [dm3] 2R_17335771_SNP [dm6]	C	T	3.753e^-4	0.992	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16785763	2R_16785763_SNP [dm3] 2R_20898258_SNP [dm6]	G	C	3.757e^-4	0.992	UPSTREAM otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26935775	3R_26935775_SNP [dm3] 3R_31110053_SNP [dm6]	T	A	3.763e^-4	0.992	UPSTREAM CG11318 INTERGENIC
3R	9960850	3R_9960850_SNP [dm3] 3R_14135128_SNP [dm6]	G	A	3.765e^-4	0.992	INTERGENIC
2L	11969958	2L_11969958_SNP [dm3] 2L_11969958_SNP [dm6]	T	G	3.765e^-4	0.992	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14898063	2L_14898063_SNP [dm3] 2L_14898063_SNP [dm6]	A	C	3.776e^-4	0.992	INTERGENIC
2R	16745102	2R_16745102_SNP [dm3] 2R_20857597_SNP [dm6]	C	G	3.780e^-4	0.992	INTERGENIC
2L	14908339	2L_14908339_SNP [dm3] 2L_14908339_SNP [dm6]	A	C	3.783e^-4	0.992	UTR_3_PRIME CG42313
2L	19813521	2L_19813521_SNP [dm3] 2L_19813521_SNP [dm6]	A	G	3.788e^-4	0.992	DOWNSTREAM CG13962 & 1 other INTRON sick
X	18184831	X_18184831_SNP [dm3] X_18290798_SNP [dm6]	A	T	3.793e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14179613	2R_14179613_SNP [dm3] 2R_18292108_SNP [dm6]	A	T	3.807e^-4	0.992	UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17551768	2L_17551768_SNP [dm3] 2L_17551768_SNP [dm6]	G	C	3.810e^-4	0.992	INTERGENIC
2R	18380107	2R_18380107_SNP [dm3] 2R_22492602_SNP [dm6]	G	T	3.812e^-4	0.992	SYNONYMOUS_CODING CG4610 DOWNSTREAM CG4554	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7719917	2L_7719917_SNP [dm3] 2L_7719917_SNP [dm6]	T	A	3.816e^-4	0.992	SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
2L	14366934	2L_14366934_SNP [dm3] 2L_14366934_SNP [dm6]	T	A	3.816e^-4	0.992	DOWNSTREAM spel1 INTERGENIC
3R	22371899	3R_22371899_SNP [dm3] 3R_26546177_SNP [dm6]	T	C	3.827e^-4	0.992	INTRON scrib
3R	20768130	3R_20768130_INS [dm3] 3R_24942408_INS [dm6]	A	AA	3.828e^-4	0.992	INTRON ssh	TF binding site mE1_TFBS_cad
2R	12160660	2R_12160660_SNP [dm3] 2R_16273155_SNP [dm6]	A	T	3.837e^-4	0.992	NON_SYNONYMOUS_CODING CG33017	TF binding site mE1_TFBS_sens
2R	12160662	2R_12160662_SNP [dm3] 2R_16273157_SNP [dm6]	G	A	3.837e^-4	0.992	SYNONYMOUS_CODING CG33017	TF binding site mE1_TFBS_sens
3L	16238692	3L_16238692_SNP [dm3] 3L_16245592_SNP [dm6]	A	G	3.841e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20197513	2R_20197513_SNP [dm3] 2R_24309990_SNP [dm6]	A	G	3.844e^-4	0.992	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	16011988	2L_16011988_SNP [dm3] 2L_16011988_SNP [dm6]	G	A	3.849e^-4	0.992	INTRON beat-Ic
2R	12161639	2R_12161639_SNP [dm3] 2R_16274134_SNP [dm6]	A	C	3.853e^-4	0.992	NON_SYNONYMOUS_CODING CG33017
X	13196136	X_13196136_SNP [dm3] X_13302103_SNP [dm6]	T	G	3.857e^-4	0.992	INTRON CG1764
X	21919151	X_21919151_SNP [dm3] X_22517315_SNP [dm6]	A	C	3.864e^-4	0.992	INTRON CG17600	transposable element FlyBase
2L	14580138	2L_14580138_SNP [dm3] 2L_14580138_SNP [dm6]	G	T	3.873e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5682782	2L_5682782_SNP [dm3] 2L_5682782_SNP [dm6]	G	A	3.877e^-4	0.992	INTERGENIC
3L	1979921	3L_1979921_SNP [dm3] 3L_1979921_SNP [dm6]	G	T	3.880e^-4	0.992	INTERGENIC
2L	12668972	2L_12668972_SNP [dm3] 2L_12668972_SNP [dm6]	G	A	3.899e^-4	0.992	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14575392	2L_14575392_SNP [dm3] 2L_14575392_SNP [dm6]	G	A	3.901e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5726424	3L_5726424_SNP [dm3] 3L_5733324_SNP [dm6]	G	A	3.904e^-4	0.992	INTRON sif
3L	2625648	3L_2625648_DEL [dm3] 3L_2625648_DEL [dm6]	CAAAG	T	3.905e^-4	0.992	INTRON Pxn
2L	14580271	2L_14580271_SNP [dm3] 2L_14580271_SNP [dm6]	C	T	3.905e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13699205	2L_13699205_SNP [dm3] 2L_13699205_SNP [dm6]	C	T	3.914e^-4	0.992	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11442802	2L_11442802_SNP [dm3] 2L_11442802_SNP [dm6]	G	A	3.916e^-4	0.992	INTRON salm
X	20321222	X_20321222_SNP [dm3] X_20450195_SNP [dm6]	G	A	3.924e^-4	0.992	INTRON CG32506
X	18981296	X_18981296_DEL [dm3] X_19087263_DEL [dm6]	AGACAGTTCCTG...	A	3.952e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	15730185	X_15730185_SNP [dm3] X_15836152_SNP [dm6]	T	A	3.959e^-4	0.992	UTR_5_PRIME CG32582 UPSTREAM Chc
2L	14593801	2L_14593801_SNP [dm3] 2L_14593801_SNP [dm6]	C	A	3.970e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8700500	2L_8700500_SNP [dm3] 2L_8700500_SNP [dm6]	A	T	3.975e^-4	0.992	UPSTREAM Hnf4 INTRON Hnf4
2R	16162803	2R_16162803_SNP [dm3] 2R_20275298_SNP [dm6]	A	G	3.980e^-4	0.992	SYNONYMOUS_CODING CG11788 UPSTREAM CG10444 DOWNSTREAM CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7545557	X_7545557_SNP [dm3] X_7651524_SNP [dm6]	T	A	3.983e^-4	0.992	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25097537	3R_25097537_SNP [dm3] 3R_29271815_SNP [dm6]	T	A	3.988e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
2R	12879491	2R_12879491_SNP [dm3] 2R_16991986_SNP [dm6]	T	C	3.998e^-4	0.992	INTRON Cbp53E
2L	11600853	2L_11600853_SNP [dm3] 2L_11600853_SNP [dm6]	T	A	4.001e^-4	0.992	INTRON kek2
X	21917876	X_21917876_SNP [dm3] X_22516040_SNP [dm6]	A	G	4.007e^-4	0.992	INTRON CG17600
2R	2993750	2R_2993750_SNP [dm3] 2R_7106245_SNP [dm6]	A	G	4.008e^-4	0.992	UPSTREAM esn INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8532386	2R_8532386_SNP [dm3] 2R_12644881_SNP [dm6]	A	G	4.012e^-4	0.992	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	11710603	2R_11710603_SNP [dm3] 2R_15823098_SNP [dm6]	C	T	4.012e^-4	0.992	INTRON tun	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2485481	2L_2485481_DEL [dm3] 2L_2485481_DEL [dm6]	AA	C	4.012e^-4	0.992	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	14366932	2L_14366932_SNP [dm3] 2L_14366932_SNP [dm6]	A	C	4.017e^-4	0.992	DOWNSTREAM spel1 INTERGENIC
X	7769480	X_7769480_SNP [dm3] X_7875447_SNP [dm6]	C	T	4.020e^-4	0.992	SYNONYMOUS_CODING Ir7c
3R	17149777	3R_17149777_SNP [dm3] 3R_21324055_SNP [dm6]	G	A	4.020e^-4	0.992	INTRON CG16791	TF binding site mE1_TFBS_cad
X	5379385	X_5379385_INS [dm3] X_5485352_INS [dm6]	T	TT	4.020e^-4	0.992	INTRON SPR
2R	2379381	2R_2379381_SNP [dm3] 2R_6491876_SNP [dm6]	G	A	4.023e^-4	0.992	INTERGENIC	transposable element FlyBase
X	9212541	X_9212541_SNP [dm3] X_9318508_SNP [dm6]	C	T	4.030e^-4	0.992	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14686419	3R_14686419_SNP [dm3] 3R_18860697_SNP [dm6]	T	G	4.032e^-4	0.992	INTERGENIC
X	14818898	X_14818898_SNP [dm3] X_14924865_SNP [dm6]	A	G	4.073e^-4	0.995	INTRON Flo2
X	12952896	X_12952896_SNP [dm3] X_13058863_SNP [dm6]	G	C	4.085e^-4	0.995	INTRON rad
2L	7253097	2L_7253097_SNP [dm3] 2L_7253097_SNP [dm6]	G	C	4.087e^-4	0.995	UPSTREAM CG13786 INTERGENIC
2R	4028138	2R_4028138_SNP [dm3] 2R_8140633_SNP [dm6]	G	A	4.092e^-4	0.995	INTRON Lpin	TF binding site mE1_TFBS_chinmo
X	7851867	X_7851867_SNP [dm3] X_7957834_SNP [dm6]	G	C	4.092e^-4	0.995	INTRON sws
2L	11969999	2L_11969999_SNP [dm3] 2L_11969999_SNP [dm6]	A	G	4.092e^-4	0.995	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12951187	X_12951187_SNP [dm3] X_13057154_SNP [dm6]	A	G	4.096e^-4	0.995	INTRON rad
3L	607755	3L_607755_SNP [dm3] 3L_607755_SNP [dm6]	G	T	4.100e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	607763	3L_607763_SNP [dm3] 3L_607763_SNP [dm6]	T	G	4.100e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	18264287	3L_18264287_SNP [dm3] 3L_18271187_SNP [dm6]	C	T	4.105e^-4	0.995	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14369540	2L_14369540_SNP [dm3] 2L_14369540_SNP [dm6]	A	T	4.112e^-4	0.995	INTERGENIC
3L	2550938	3L_2550938_SNP [dm3] 3L_2550938_SNP [dm6]	A	T	4.116e^-4	0.995	INTRON Spn
2R	8003935	2R_8003935_SNP [dm3] 2R_12116430_SNP [dm6]	T	G	4.123e^-4	0.995	INTRON jeb	TF binding site mE1_TFBS_cad
2L	4621096	2L_4621096_SNP [dm3] 2L_4621096_SNP [dm6]	G	C	4.124e^-4	0.995	DOWNSTREAM CR44609 INTERGENIC
X	18900694	X_18900694_INS [dm3] X_19006661_INS [dm6]	C	CCCTC	4.128e^-4	0.995	INTRON CG43759
3L	885771	3L_885771_INS [dm3] 3L_885771_INS [dm6]	T	TATGTATATATATGTATA...	4.142e^-4	0.995	INTRON CG32479
2L	4592710	2L_4592710_SNP [dm3] 2L_4592710_SNP [dm6]	C	A	4.149e^-4	0.995	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20763348	2L_20763348_SNP [dm3] 2L_20763348_SNP [dm6]	A	T	4.159e^-4	0.995	INTRON dia
2L	20763354	2L_20763354_SNP [dm3] 2L_20763354_SNP [dm6]	C	A	4.159e^-4	0.995	INTRON dia
2L	14366808	2L_14366808_INS [dm3] 2L_14366808_INS [dm6]	T	TGATTTTT	4.168e^-4	0.995	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2R	4406402	2R_4406402_SNP [dm3] 2R_8518897_SNP [dm6]	C	T	4.190e^-4	0.995	INTRON mtt
X	21918481	X_21918481_SNP [dm3] X_22516645_SNP [dm6]	T	G	4.193e^-4	0.995	INTRON CG17600	transposable element FlyBase
2L	12668946	2L_12668946_SNP [dm3] 2L_12668946_SNP [dm6]	A	G	4.193e^-4	0.995	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19813369	2L_19813369_DEL [dm3] 2L_19813369_DEL [dm6]	TGTAACTCTAAAGGCTAAAA...	T	4.197e^-4	0.995	DOWNSTREAM CG13962 & 1 other INTRON sick	transposable element FlyBase
3R	25465919	3R_25465919_SNP [dm3] 3R_29640197_SNP [dm6]	G	A	4.205e^-4	0.995	INTRON Dop1R2
2L	4621076	2L_4621076_SNP [dm3] 2L_4621076_SNP [dm6]	C	T	4.225e^-4	0.995	DOWNSTREAM CR44609 INTERGENIC
2L	2556879	2L_2556879_SNP [dm3] 2L_2556879_SNP [dm6]	T	A	4.226e^-4	0.995	DOWNSTREAM CR44113 INTERGENIC
2R	18381024	2R_18381024_SNP [dm3] 2R_22493519_SNP [dm6]	G	C	4.249e^-4	0.995	NON_SYNONYMOUS_CODING CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14575412	2L_14575412_SNP [dm3] 2L_14575412_SNP [dm6]	G	T	4.265e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4953034	2L_4953034_SNP [dm3] 2L_4953034_SNP [dm6]	T	C	4.286e^-4	0.995	SYNONYMOUS_CODING Jon25Bii	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19820041	2L_19820041_SNP [dm3] 2L_19820041_SNP [dm6]	G	A	4.301e^-4	0.995	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12127227	2R_12127227_SNP [dm3] 2R_16239722_SNP [dm6]	T	C	4.304e^-4	0.995	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1069701	2L_1069701_SNP [dm3] 2L_1069701_SNP [dm6]	T	A	4.313e^-4	0.995	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	12370361	X_12370361_SNP [dm3] X_12476328_SNP [dm6]	C	T	4.323e^-4	0.995	NON_SYNONYMOUS_CODING CG42258 INTRON CG42258
X	8780053	X_8780053_SNP [dm3] X_8886020_SNP [dm6]	C	G	4.325e^-4	0.995	INTRON Moe
3L	11649460	3L_11649460_DEL [dm3] 3L_11656360_DEL [dm6]	GGAA	G	4.331e^-4	0.995	UPSTREAM mir-274 INTRON CG32085
X	13635501	X_13635501_SNP [dm3] X_13741468_SNP [dm6]	C	G	4.335e^-4	0.995	DOWNSTREAM CG11151 INTRON Grip91 & 1 other
2R	8914698	2R_8914698_SNP [dm3] 2R_13027193_SNP [dm6]	T	C	4.358e^-4	0.995	INTERGENIC
2L	12970753	2L_12970753_SNP [dm3] 2L_12970753_SNP [dm6]	T	C	4.361e^-4	0.995	INTERGENIC
3R	25145011	3R_25145011_SNP [dm3] 3R_29319289_SNP [dm6]	G	C	4.371e^-4	0.995	NON_SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11601846	2L_11601846_SNP [dm3] 2L_11601846_SNP [dm6]	C	G	4.372e^-4	0.995	INTRON kek2
3L	5726428	3L_5726428_SNP [dm3] 3L_5733328_SNP [dm6]	A	G	4.380e^-4	0.995	INTRON sif
2R	5421287	2R_5421287_SNP [dm3] 2R_9533782_SNP [dm6]	C	A	4.381e^-4	0.995	INTRON brp	TF binding site mE1_TFBS_cad
3R	25155915	3R_25155915_SNP [dm3] 3R_29330193_SNP [dm6]	G	A	4.382e^-4	0.995	INTERGENIC
2R	7197424	2R_7197424_SNP [dm3] 2R_11309919_SNP [dm6]	T	C	4.385e^-4	0.995	UPSTREAM CG43114 DOWNSTREAM nompA & 1 other INTERGENIC
2L	15797981	2L_15797981_SNP [dm3] 2L_15797981_SNP [dm6]	G	A	4.388e^-4	0.995	INTERGENIC
3R	25626072	3R_25626072_SNP [dm3] 3R_29800350_SNP [dm6]	A	G	4.404e^-4	0.995	SYNONYMOUS_CODING Ice UPSTREAM CG7837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	19813248	2L_19813248_SNP [dm3] 2L_19813248_SNP [dm6]	C	A	4.406e^-4	0.995	DOWNSTREAM CG13962 & 1 other INTRON sick	transposable element FlyBase
3L	12172173	3L_12172173_SNP [dm3] 3L_12179073_SNP [dm6]	G	A	4.410e^-4	0.995	UPSTREAM CAH2 INTRON CAH2
2L	6109345	2L_6109345_SNP [dm3] 2L_6109345_SNP [dm6]	G	A	4.413e^-4	0.995	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12521025	2L_12521025_SNP [dm3] 2L_12521025_SNP [dm6]	T	A	4.416e^-4	0.995	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	13943696	2L_13943696_SNP [dm3] 2L_13943696_SNP [dm6]	A	T	4.422e^-4	0.995	INTRON Ance-3
2L	15285494	2L_15285494_SNP [dm3] 2L_15285494_SNP [dm6]	A	G	4.424e^-4	0.995	SYNONYMOUS_CODING CG15263
3R	6359080	3R_6359080_SNP [dm3] 3R_10533358_SNP [dm6]	C	A	4.436e^-4	0.995	INTRON hth
2L	12394059	2L_12394059_SNP [dm3] 2L_12394059_SNP [dm6]	A	G	4.452e^-4	0.995	INTRON bru-2
3R	6362403	3R_6362403_SNP [dm3] 3R_10536681_SNP [dm6]	T	A	4.455e^-4	0.995	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	16013022	2L_16013022_SNP [dm3] 2L_16013022_SNP [dm6]	G	T	4.455e^-4	0.995	INTRON beat-Ic
2L	12398246	2L_12398246_SNP [dm3] 2L_12398246_SNP [dm6]	T	A	4.462e^-4	0.995	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2L	14367575	2L_14367575_SNP [dm3] 2L_14367575_SNP [dm6]	T	C	4.462e^-4	0.995	DOWNSTREAM spel1 INTERGENIC
2R	13391711	2R_13391711_SNP [dm3] 2R_17504206_SNP [dm6]	T	A	4.472e^-4	0.995	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12808809	3L_12808809_SNP [dm3] 3L_12815709_SNP [dm6]	C	T	4.476e^-4	0.995	INTRON CG42588
X	9915458	X_9915458_SNP [dm3] X_10021425_SNP [dm6]	A	G	4.483e^-4	0.995	INTRON Cht6
2R	2927393	2R_2927393_SNP [dm3] 2R_7039888_SNP [dm6]	A	G	4.490e^-4	0.995	UPSTREAM CG33914 & 1 other DOWNSTREAM CR12842 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11971211	X_11971211_SNP [dm3] X_12077178_SNP [dm6]	A	C	4.491e^-4	0.995	UTR_5_PRIME Ten-a EXON CR43960
2R	13181512	2R_13181512_SNP [dm3] 2R_17294007_SNP [dm6]	G	A	4.492e^-4	0.995	INTRON mbl
2L	18988305	2L_18988305_SNP [dm3] 2L_18988305_SNP [dm6]	C	T	4.514e^-4	0.995	NON_SYNONYMOUS_CODING CG15170 UTR_3_PRIME CG15168	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19683869	2L_19683869_SNP [dm3] 2L_19683869_SNP [dm6]	C	G	4.531e^-4	0.995	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21919383	X_21919383_INS [dm3] X_22517547_INS [dm6]	T	TAAAAATGCATATGCATATT...	4.546e^-4	0.995	INTRON CG17600
X	12507977	X_12507977_SNP [dm3] X_12613944_SNP [dm6]	G	T	4.548e^-4	0.995	DOWNSTREAM CR45621 INTRON CG2543 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9730655	3L_9730655_SNP [dm3] 3L_9737555_SNP [dm6]	C	T	4.549e^-4	0.995	INTRON CG42268
3L	19278622	3L_19278622_SNP [dm3] 3L_19285522_SNP [dm6]	T	C	4.556e^-4	0.995	INTRON Gbs-76A
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	4.557e^-4	0.995	SYNONYMOUS_CODING Best2
2L	19810911	2L_19810911_DEL [dm3] 2L_19810911_DEL [dm6]	AA	A	4.561e^-4	0.995	DOWNSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	20760670	2L_20760670_SNP [dm3] 2L_20760670_SNP [dm6]	G	T	4.568e^-4	0.995	NON_SYNONYMOUS_CODING dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14320592	3R_14320592_SNP [dm3] 3R_18494870_SNP [dm6]	T	G	4.572e^-4	0.995	INTRON fru
2L	11907537	2L_11907537_SNP [dm3] 2L_11907537_SNP [dm6]	T	C	4.576e^-4	0.995	INTRON Pde1c
2R	2712508	2R_2712508_SNP [dm3] 2R_6825003_SNP [dm6]	A	C	4.591e^-4	0.995	INTERGENIC
3L	10224097	3L_10224097_SNP [dm3] 3L_10230997_SNP [dm6]	C	T	4.596e^-4	0.995	INTERGENIC
3R	27043889	3R_27043889_DEL [dm3] 3R_31218167_DEL [dm6]	ACCAATT	A	4.604e^-4	0.995	UPSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	16610058	X_16610058_SNP [dm3] X_16716025_SNP [dm6]	A	G	4.605e^-4	0.995	INTRON CG34325
2R	1715182	2R_1715182_SNP [dm3] 2R_5827677_SNP [dm6]	C	T	4.605e^-4	0.995	INTRON dpr12
2L	21260744	2L_21260744_SNP [dm3] 2L_21260744_SNP [dm6]	T	A	4.630e^-4	0.995	UPSTREAM l_2_k14505 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7769272	X_7769272_SNP [dm3] X_7875239_SNP [dm6]	G	A	4.634e^-4	0.995	SYNONYMOUS_CODING Ir7c
3R	24611464	3R_24611464_SNP [dm3] 3R_28785742_SNP [dm6]	G	T	4.634e^-4	0.995	INTERGENIC
2R	19508292	2R_19508292_SNP [dm3] 2R_23620769_SNP [dm6]	G	A	4.641e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26696051	3R_26696051_SNP [dm3] 3R_30870329_SNP [dm6]	A	G	4.647e^-4	0.995	DOWNSTREAM CG15545 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	20110632	2R_20110632_SNP [dm3] 2R_24223109_SNP [dm6]	C	T	4.660e^-4	0.995	INTRON CG30419
3R	24272358	3R_24272358_SNP [dm3] 3R_28446636_SNP [dm6]	T	C	4.661e^-4	0.995	INTRON beat-VI
2L	14309685	2L_14309685_SNP [dm3] 2L_14309685_SNP [dm6]	C	T	4.666e^-4	0.995	INTRON wb	TF binding site mE1_TFBS_HSA
2L	16181040	2L_16181040_SNP [dm3] 2L_16181040_SNP [dm6]	C	T	4.667e^-4	0.995	INTRON Ca-alpha1D
2L	19385897	2L_19385897_SNP [dm3] 2L_19385897_SNP [dm6]	C	A	4.668e^-4	0.995	INTRON fon
X	9834226	X_9834226_SNP [dm3] X_9940193_SNP [dm6]	T	C	4.670e^-4	0.995	INTERGENIC
2L	2820177	2L_2820177_SNP [dm3] 2L_2820177_SNP [dm6]	C	A	4.680e^-4	0.995	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11264995	X_11264995_INS [dm3] X_11370962_INS [dm6]	A	AT	4.683e^-4	0.995	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5500910	2L_5500910_SNP [dm3] 2L_5500910_SNP [dm6]	A	G	4.696e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22371765	3R_22371765_DEL [dm3] 3R_26546043_DEL [dm6]	TTTTCCCGAGCGAAACTTCT...	T	4.699e^-4	0.995	INTRON scrib
3R	22371820	3R_22371820_SNP [dm3] 3R_26546098_SNP [dm6]	C	T	4.699e^-4	0.995	INTRON scrib
X	21916829	X_21916829_INS [dm3] X_22514993_INS [dm6]	A	AC	4.701e^-4	0.995	UPSTREAM CG17600 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13196035	X_13196035_SNP [dm3] X_13302002_SNP [dm6]	A	T	4.706e^-4	0.995	INTRON CG1764
X	13956214	X_13956214_SNP [dm3] X_14062181_SNP [dm6]	C	T	4.720e^-4	0.995	UPSTREAM Ste:CG33236 INTERGENIC
2L	16717850	2L_16717850_SNP [dm3] 2L_16717850_SNP [dm6]	G	A	4.758e^-4	0.995	INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl
3R	16331881	3R_16331881_SNP [dm3] 3R_20506159_SNP [dm6]	A	T	4.776e^-4	0.995	SYNONYMOUS_CODING Or92a
2L	10292467	2L_10292467_DEL [dm3] 2L_10292467_DEL [dm6]	ATA	A	4.778e^-4	0.995	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14367139	2L_14367139_SNP [dm3] 2L_14367139_SNP [dm6]	C	T	4.784e^-4	0.995	DOWNSTREAM spel1 INTERGENIC
2L	19818724	2L_19818724_SNP [dm3] 2L_19818724_SNP [dm6]	G	T	4.785e^-4	0.995	INTRON sick
3L	7871867	3L_7871867_SNP [dm3] 3L_7878767_SNP [dm6]	C	A	4.785e^-4	0.995	INTRON CG32365	TF binding site BDTNP1_TFBS_dl
3L	12607598	3L_12607598_SNP [dm3] 3L_12614498_SNP [dm6]	T	G	4.797e^-4	0.995	INTRON caup	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	12607600	3L_12607600_SNP [dm3] 3L_12614500_SNP [dm6]	G	A	4.798e^-4	0.995	INTRON caup	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	19157571	2L_19157571_SNP [dm3] 2L_19157571_SNP [dm6]	A	T	4.800e^-4	0.995	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9449946	2R_9449946_SNP [dm3] 2R_13562441_SNP [dm6]	G	A	4.808e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	25164438	3R_25164438_DEL [dm3] 3R_29338716_DEL [dm6]	TG	T	4.814e^-4	0.995	INTERGENIC
X	4925518	X_4925518_SNP [dm3] X_5031485_SNP [dm6]	C	A	4.815e^-4	0.995	INTRON CR44833
2R	14658162	2R_14658162_SNP [dm3] 2R_18770657_SNP [dm6]	C	A	4.826e^-4	0.995	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	12236726	3L_12236726_SNP [dm3] 3L_12243626_SNP [dm6]	T	C	4.834e^-4	0.995	INTRON app
3L	6496795	3L_6496795_SNP [dm3] 3L_6503695_SNP [dm6]	C	G	4.845e^-4	0.995	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	16202530	3L_16202530_INS [dm3] 3L_16209430_INS [dm6]	T	TT	4.847e^-4	0.995	INTERGENIC
3L	11185868	3L_11185868_SNP [dm3] 3L_11192768_SNP [dm6]	G	A	4.847e^-4	0.995	INTRON GlcAT-P
2L	2321363	2L_2321363_SNP [dm3] 2L_2321363_SNP [dm6]	G	T	4.849e^-4	0.995	INTRON CG9967 & 1 other
2R	12197476	2R_12197476_SNP [dm3] 2R_16309971_SNP [dm6]	A	C	4.851e^-4	0.995	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	12431738	X_12431738_SNP [dm3] X_12537705_SNP [dm6]	A	G	4.853e^-4	0.995	INTRON CG43921
3R	9254455	3R_9254455_SNP [dm3] 3R_13428733_SNP [dm6]	T	G	4.864e^-4	0.995	DOWNSTREAM yrt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11083847	X_11083847_SNP [dm3] X_11189814_SNP [dm6]	G	C	4.869e^-4	0.995	INTERGENIC
2R	4018920	2R_4018920_SNP [dm3] 2R_8131415_SNP [dm6]	A	T	4.869e^-4	0.995	UPSTREAM Pabp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	8306988	X_8306988_SNP [dm3] X_8412955_SNP [dm6]	G	A	4.875e^-4	0.995	INTRON Trf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1107801	2L_1107801_SNP [dm3] 2L_1107801_SNP [dm6]	A	G	4.889e^-4	0.995	UPSTREAM CG14339 INTRON mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9863556	2L_9863556_SNP [dm3] 2L_9863556_SNP [dm6]	G	A	4.908e^-4	0.995	INTRON nAChRalpha6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16197729	3L_16197729_SNP [dm3] 3L_16204629_SNP [dm6]	G	C	4.911e^-4	0.995	INTERGENIC
3R	18479987	3R_18479987_SNP [dm3] 3R_22654265_SNP [dm6]	G	A	4.911e^-4	0.995	INTRON CG45058
X	12370359	X_12370359_SNP [dm3] X_12476326_SNP [dm6]	G	A	4.921e^-4	0.995	NON_SYNONYMOUS_CODING CG42258 INTRON CG42258
2L	19811535	2L_19811535_SNP [dm3] 2L_19811535_SNP [dm6]	A	G	4.940e^-4	0.995	DOWNSTREAM snRNA:U4:38AB & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11649467	3L_11649467_DEL [dm3] 3L_11656367_DEL [dm6]	CTAC	T	4.967e^-4	0.995	UPSTREAM mir-274 INTRON CG32085
2R	11697324	2R_11697324_SNP [dm3] 2R_15809819_SNP [dm6]	G	A	4.970e^-4	0.995	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13193481	3L_13193481_SNP [dm3] 3L_13200381_SNP [dm6]	G	A	4.971e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10507878	2L_10507878_SNP [dm3] 2L_10507878_SNP [dm6]	G	C	4.972e^-4	0.995	UTR_3_PRIME CG7384 & 1 other DOWNSTREAM CR44224	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	19683858	2L_19683858_SNP [dm3] 2L_19683858_SNP [dm6]	G	A	4.978e^-4	0.995	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20198031	2R_20198031_SNP [dm3] 2R_24310508_SNP [dm6]	G	A	4.980e^-4	0.995	INTRON betaTub60D
2L	11333327	2L_11333327_SNP [dm3] 2L_11333327_SNP [dm6]	A	T	4.981e^-4	0.995	UPSTREAM CR44584 INTERGENIC
2L	9350859	2L_9350859_SNP [dm3] 2L_9350859_SNP [dm6]	C	T	4.986e^-4	0.995	SYNONYMOUS_CODING CG13110 DOWNSTREAM CG43350
X	12086349	X_12086349_SNP [dm3] X_12192316_SNP [dm6]	A	G	4.988e^-4	0.995	INTRON Ten-a
3R	15290886	3R_15290886_SNP [dm3] 3R_19465164_SNP [dm6]	T	A	4.990e^-4	0.995	INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7768255	X_7768255_SNP [dm3] X_7874222_SNP [dm6]	G	A	4.992e^-4	0.995	UPSTREAM dec-1 & 1 other DOWNSTREAM CR43615 INTERGENIC
2R	12207360	2R_12207360_SNP [dm3] 2R_16319855_SNP [dm6]	T	C	4.994e^-4	0.995	SYNONYMOUS_CODING CG8060 DOWNSTREAM CG30096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12618990	X_12618990_SNP [dm3] X_12724957_SNP [dm6]	A	C	5.022e^-4	0.995	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11649635	3L_11649635_SNP [dm3] 3L_11656535_SNP [dm6]	A	G	5.022e^-4	0.995	UPSTREAM mir-274 INTRON CG32085
2R	11775267	2R_11775267_SNP [dm3] 2R_15887762_SNP [dm6]	G	A	5.023e^-4	0.995	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	2729343	2R_2729343_SNP [dm3] 2R_6841838_SNP [dm6]	G	C	5.032e^-4	0.995	EXON CR44166
2R	12849479	2R_12849479_SNP [dm3] 2R_16961974_SNP [dm6]	T	A	5.034e^-4	0.995	INTERGENIC
2L	14898098	2L_14898098_SNP [dm3] 2L_14898098_SNP [dm6]	G	A	5.035e^-4	0.995	INTERGENIC
2R	16194861	2R_16194861_SNP [dm3] 2R_20307356_SNP [dm6]	C	A	5.036e^-4	0.995	INTRON CG11200	TF binding site mE1_TFBS_inv
2R	11709256	2R_11709256_DEL [dm3] 2R_15821751_DEL [dm6]	TT	G	5.042e^-4	0.995	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3L	10001766	3L_10001766_SNP [dm3] 3L_10008666_SNP [dm6]	C	T	5.045e^-4	0.995	INTRON dpr6
2L	13074513	2L_13074513_SNP [dm3] 2L_13074513_SNP [dm6]	C	T	5.050e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_inv
X	11195041	X_11195041_SNP [dm3] X_11301008_SNP [dm6]	A	C	5.052e^-4	0.995	INTRON CG44422
2R	10475923	2R_10475923_INS [dm3] 2R_14588418_INS [dm6]	A	AATGGCAAACTT...	5.056e^-4	0.995	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1026212	3L_1026212_SNP [dm3] 3L_1026212_SNP [dm6]	C	T	5.058e^-4	0.995	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14282663	2R_14282663_SNP [dm3] 2R_18395158_SNP [dm6]	G	A	5.063e^-4	0.995	SYNONYMOUS_CODING Idgf5
2L	21059043	2L_21059043_SNP [dm3] 2L_21059043_SNP [dm6]	G	T	5.077e^-4	0.995	DOWNSTREAM Itgbetanu INTRON CG9265	TF binding site mE1_TFBS_cad
3L	7100037	3L_7100037_SNP [dm3] 3L_7106937_SNP [dm6]	G	A	5.091e^-4	0.995	INTRON form3
3L	4563963	3L_4563963_SNP [dm3] 3L_4563963_SNP [dm6]	C	A	5.103e^-4	0.995	INTRON CG42540	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12197475	2R_12197475_SNP [dm3] 2R_16309970_SNP [dm6]	G	C	5.104e^-4	0.995	NON_SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11649794	3L_11649794_SNP [dm3] 3L_11656694_SNP [dm6]	G	A	5.125e^-4	0.995	UPSTREAM mir-274 INTRON CG32085
3L	15497635	3L_15497635_SNP [dm3] 3L_15504535_SNP [dm6]	C	T	5.128e^-4	0.995	SYNONYMOUS_CODING CG7857 DOWNSTREAM CG7272 & 1 other	TF binding site mE1_TFBS_sens
3L	5927223	3L_5927223_SNP [dm3] 3L_5934123_SNP [dm6]	T	C	5.140e^-4	0.995	SYNONYMOUS_CODING CG33993
3L	6482970	3L_6482970_SNP [dm3] 3L_6489870_SNP [dm6]	C	G	5.153e^-4	0.995	SPLICE_SITE_REGION CG8270 INTRON CG8270
X	11265001	X_11265001_MNP [dm3] X_11370968_MNP [dm6]	TTA	CAT	5.156e^-4	0.995	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19157582	2L_19157582_INS [dm3] 2L_19157582_INS [dm6]	T	TGACAATATGATAT...	5.162e^-4	0.995	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20181520	2R_20181520_SNP [dm3] 2R_24293997_SNP [dm6]	T	C	5.168e^-4	0.995	UPSTREAM CG3394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26072301	3R_26072301_SNP [dm3] 3R_30246579_SNP [dm6]	G	A	5.190e^-4	0.995	NON_SYNONYMOUS_CODING CG9733
2L	15776662	2L_15776662_SNP [dm3] 2L_15776662_SNP [dm6]	T	G	5.198e^-4	0.995	SYNONYMOUS_CODING CG43760
2L	1034392	2L_1034392_SNP [dm3] 2L_1034392_SNP [dm6]	T	C	5.201e^-4	0.995	INTRON IA-2
3L	2680052	3L_2680052_SNP [dm3] 3L_2680052_SNP [dm6]	G	A	5.205e^-4	0.995	INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	17398780	3R_17398780_DEL [dm3] 3R_21573058_DEL [dm6]	AAAAGGT	A	5.215e^-4	0.995	UTR_3_PRIME InR
2R	17454740	2R_17454740_SNP [dm3] 2R_21567235_SNP [dm6]	T	C	5.223e^-4	0.995	INTRON CG10440
3L	12411201	3L_12411201_SNP [dm3] 3L_12418101_SNP [dm6]	T	C	5.224e^-4	0.995	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	8267409	2L_8267409_SNP [dm3] 2L_8267409_SNP [dm6]	T	A	5.224e^-4	0.995	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3L	5327982	3L_5327982_INS [dm3] 3L_5334882_INS [dm6]	C	CCTTC	5.234e^-4	0.995	EXON CR45742
3L	5327984	3L_5327984_MNP [dm3] 3L_5334884_MNP [dm6]	AAG	CTT	5.234e^-4	0.995	EXON CR45742
3R	22651676	3R_22651676_SNP [dm3] 3R_26825954_SNP [dm6]	A	T	5.237e^-4	0.995	INTRON Tl
3L	3260819	3L_3260819_SNP [dm3] 3L_3260819_SNP [dm6]	G	A	5.255e^-4	0.995	INTRON ckd
2L	9413590	2L_9413590_SNP [dm3] 2L_9413590_SNP [dm6]	T	C	5.261e^-4	0.995	INTRON Shawl
3L	1026191	3L_1026191_SNP [dm3] 3L_1026191_SNP [dm6]	C	T	5.297e^-4	0.995	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13984611	3R_13984611_SNP [dm3] 3R_18158889_SNP [dm6]	A	C	5.297e^-4	0.995	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3L	9990642	3L_9990642_SNP [dm3] 3L_9997542_SNP [dm6]	C	G	5.299e^-4	0.995	INTRON dpr6
2R	18178308	2R_18178308_SNP [dm3] 2R_22290803_SNP [dm6]	T	A	5.309e^-4	0.995	UPSTREAM CR43422 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12172407	3L_12172407_SNP [dm3] 3L_12179307_SNP [dm6]	T	G	5.316e^-4	0.995	UPSTREAM CAH2 INTRON CAH2
X	4988933	X_4988933_SNP [dm3] X_5094900_SNP [dm6]	T	A	5.319e^-4	0.995	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4406426	2R_4406426_SNP [dm3] 2R_8518921_SNP [dm6]	C	T	5.321e^-4	0.995	INTRON mtt
X	14818011	X_14818011_DEL [dm3] X_14923978_DEL [dm6]	TACAT	T	5.321e^-4	0.995	UPSTREAM CG9503 INTRON Flo2
X	21917484	X_21917484_SNP [dm3] X_22515648_SNP [dm6]	G	A	5.325e^-4	0.995	UPSTREAM CR43962 INTRON CG17600	TF binding site mE1_TFBS_HSA
X	9261304	X_9261304_SNP [dm3] X_9367271_SNP [dm6]	A	G	5.344e^-4	0.995	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	498388	3L_498388_SNP [dm3] 3L_498388_SNP [dm6]	T	C	5.345e^-4	0.995	INTRON klar
2R	19723923	2R_19723923_SNP [dm3] 2R_23836400_SNP [dm6]	C	T	5.351e^-4	0.995	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3633100	2R_3633100_SNP [dm3] 2R_7745595_SNP [dm6]	A	C	5.351e^-4	0.995	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	21919154	X_21919154_SNP [dm3] X_22517318_SNP [dm6]	G	T	5.357e^-4	0.995	INTRON CG17600	transposable element FlyBase
X	18309172	X_18309172_SNP [dm3] X_18415139_SNP [dm6]	C	T	5.358e^-4	0.995	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
2R	9662489	2R_9662489_SNP [dm3] 2R_13774984_SNP [dm6]	G	A	5.359e^-4	0.995	SYNONYMOUS_CODING Cpr50Ca
3L	14152568	3L_14152568_SNP [dm3] 3L_14159468_SNP [dm6]	G	T	5.361e^-4	0.995	INTERGENIC	regulatory region REDfly_CRMs
3R	27053169	3R_27053169_SNP [dm3] 3R_31227447_SNP [dm6]	T	G	5.364e^-4	0.995	NON_SYNONYMOUS_CODING CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18324142	3L_18324142_SNP [dm3] 3L_18331042_SNP [dm6]	C	T	5.370e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19157572	2L_19157572_SNP [dm3] 2L_19157572_SNP [dm6]	C	T	5.374e^-4	0.995	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2679074	3L_2679074_SNP [dm3] 3L_2679074_SNP [dm6]	G	T	5.381e^-4	0.995	SYNONYMOUS_CODING Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18479989	3R_18479989_SNP [dm3] 3R_22654267_SNP [dm6]	G	C	5.381e^-4	0.995	INTRON CG45058
3L	4974405	3L_4974405_SNP [dm3] 3L_4974405_SNP [dm6]	G	T	5.384e^-4	0.995	INTRON Con
2R	8809115	2R_8809115_SNP [dm3] 2R_12921610_SNP [dm6]	G	C	5.402e^-4	0.995	NON_SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8811412	2R_8811412_SNP [dm3] 2R_12923907_SNP [dm6]	T	C	5.402e^-4	0.995	UTR_5_PRIME CG13319 UPSTREAM sug DOWNSTREAM NAT1	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	1666792	3L_1666792_SNP [dm3] 3L_1666792_SNP [dm6]	T	A	5.407e^-4	0.995	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others EXON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	11582493	3R_11582493_SNP [dm3] 3R_15756771_SNP [dm6]	C	T	5.415e^-4	0.995	INTERGENIC
2R	17987076	2R_17987076_SNP [dm3] 2R_22099571_SNP [dm6]	A	G	5.416e^-4	0.995	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	5.424e^-4	0.995	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2R	6882816	2R_6882816_SNP [dm3] 2R_10995311_SNP [dm6]	A	G	5.429e^-4	0.995	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19243543	3L_19243543_SNP [dm3] 3L_19250443_SNP [dm6]	A	C	5.436e^-4	0.995	INTERGENIC
X	7770035	X_7770035_SNP [dm3] X_7876002_SNP [dm6]	C	T	5.437e^-4	0.995	SYNONYMOUS_CODING Ir7c DOWNSTREAM Ir7d
2R	2993749	2R_2993749_SNP [dm3] 2R_7106244_SNP [dm6]	A	T	5.444e^-4	0.995	UPSTREAM esn INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10015974	3L_10015974_SNP [dm3] 3L_10022874_SNP [dm6]	C	G	5.444e^-4	0.995	INTRON dpr6
2L	14604685	2L_14604685_SNP [dm3] 2L_14604685_SNP [dm6]	G	A	5.446e^-4	0.995	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19584653	3R_19584653_SNP [dm3] 3R_23758931_SNP [dm6]	A	G	5.452e^-4	0.995	UPSTREAM Hrd3 DOWNSTREAM CG10219 INTRON Plip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17979955	2L_17979955_SNP [dm3] 2L_17979955_SNP [dm6]	T	C	5.459e^-4	0.995	SYNONYMOUS_CODING btv
2R	2389907	2R_2389907_SNP [dm3] 2R_6502402_SNP [dm6]	A	G	5.482e^-4	0.995	UTR_5_PRIME jing	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2380370	2R_2380370_INS [dm3] 2R_6492865_INS [dm6]	A	ACAAA	5.493e^-4	0.995	INTERGENIC
3L	12156092	3L_12156092_SNP [dm3] 3L_12162992_SNP [dm6]	C	T	5.495e^-4	0.995	INTRON CG9760
3R	26696052	3R_26696052_SNP [dm3] 3R_30870330_SNP [dm6]	A	T	5.496e^-4	0.995	DOWNSTREAM CG15545 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3448456	3L_3448456_SNP [dm3] 3L_3448456_SNP [dm6]	C	T	5.510e^-4	0.995	INTRON eIF5B
X	6641228	X_6641228_SNP [dm3] X_6747195_SNP [dm6]	A	T	5.544e^-4	0.995	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10588724	2L_10588724_SNP [dm3] 2L_10588724_SNP [dm6]	T	G	5.559e^-4	0.995	INTRON Trim9
X	12436212	X_12436212_SNP [dm3] X_12542179_SNP [dm6]	C	T	5.560e^-4	0.995	INTRON CG43921
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	5.565e^-4	0.995	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
X	5617161	X_5617161_SNP [dm3] X_5723128_SNP [dm6]	G	A	5.574e^-4	0.995	SYNONYMOUS_CODING CG32758
3L	1499443	3L_1499443_SNP [dm3] 3L_1499443_SNP [dm6]	T	C	5.576e^-4	0.995	UTR_5_PRIME pUf68 UPSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site mE1_TFBS_cad
2L	1619479	2L_1619479_SNP [dm3] 2L_1619479_SNP [dm6]	A	G	5.584e^-4	0.995	EXON CR44603
X	13956224	X_13956224_SNP [dm3] X_14062191_SNP [dm6]	C	T	5.602e^-4	0.995	UPSTREAM Ste:CG33236 INTERGENIC
2L	1594791	2L_1594791_SNP [dm3] 2L_1594791_SNP [dm6]	T	C	5.606e^-4	0.995	DOWNSTREAM CG31935 INTRON haf
2L	14564842	2L_14564842_SNP [dm3] 2L_14564842_SNP [dm6]	T	A	5.606e^-4	0.995	INTERGENIC	TF binding site mE1_TFBS_Kr
X	10318098	X_10318098_SNP [dm3] X_10424065_SNP [dm6]	C	T	5.616e^-4	0.995	INTRON CG32683
2R	17029596	2R_17029596_SNP [dm3] 2R_21142091_SNP [dm6]	G	T	5.617e^-4	0.995	UTR_5_PRIME Magi UPSTREAM CG9406 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens
2L	16417492	2L_16417492_SNP [dm3] 2L_16417492_SNP [dm6]	C	G	5.622e^-4	0.995	DOWNSTREAM snoRNA:Me28S-A2958 INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20321158	2L_20321158_SNP [dm3] 2L_20321158_SNP [dm6]	C	T	5.627e^-4	0.995	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13018457	X_13018457_SNP [dm3] X_13124424_SNP [dm6]	G	A	5.629e^-4	0.995	INTRON CG32638	TF binding site BDTNP1_TFBS_twi
2L	2556890	2L_2556890_SNP [dm3] 2L_2556890_SNP [dm6]	C	T	5.634e^-4	0.995	DOWNSTREAM CR44113 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.285e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1743 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6584815	3L_6584815_SNP [dm3] 3L_6591715_SNP [dm6]	C	A	2.193e^-7	0.411	STOP_GAINED CG18769
3L	6584785	3L_6584785_SNP [dm3] 3L_6591685_SNP [dm6]	C	A	1.063e^-6	0.726	SYNONYMOUS_CODING CG18769
X	15249340	X_15249340_SNP [dm3] X_15355307_SNP [dm6]	A	T	1.161e^-6	0.726	INTRON acj6
3R	20781798	3R_20781798_SNP [dm3] 3R_24956076_SNP [dm6]	C	T	1.850e^-6	0.846	INTERGENIC
3L	11705562	3L_11705562_INS [dm3] 3L_11712462_INS [dm6]	A	ACA	2.255e^-6	0.846	UTR_3_PRIME CG14132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	15249300	X_15249300_SNP [dm3] X_15355267_SNP [dm6]	C	T	3.737e^-6	0.903	INTRON acj6
X	20343493	X_20343493_SNP [dm3] X_20472466_SNP [dm6]	G	C	4.135e^-6	0.903	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25381173	3R_25381173_SNP [dm3] 3R_29555451_SNP [dm6]	G	A	5.063e^-6	0.903	UPSTREAM Dr INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12604848	2L_12604848_SNP [dm3] 2L_12604848_SNP [dm6]	A	G	5.576e^-6	0.903	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13166394	2R_13166394_DEL [dm3] 2R_17278889_DEL [dm6]	TATGCATGTATATGTGT...	T	6.186e^-6	0.903	INTRON mbl
2R	5664060	2R_5664060_SNP [dm3] 2R_9776555_SNP [dm6]	C	G	6.455e^-6	0.903	DOWNSTREAM CR44207 INTRON CG1688
3R	22979287	3R_22979287_SNP [dm3] 3R_27153565_SNP [dm6]	G	A	7.134e^-6	0.903	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
3L	3238109	3L_3238109_SNP [dm3] 3L_3238109_SNP [dm6]	G	T	7.775e^-6	0.903	INTRON CG17746	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16745323	2R_16745323_SNP [dm3] 2R_20857818_SNP [dm6]	G	A	8.723e^-6	0.903	INTERGENIC
2L	15285958	2L_15285958_SNP [dm3] 2L_15285958_SNP [dm6]	T	C	8.850e^-6	0.903	UTR_3_PRIME CG15263
2R	5657042	2R_5657042_SNP [dm3] 2R_9769537_SNP [dm6]	A	T	8.927e^-6	0.903	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17941929	2R_17941929_SNP [dm3] 2R_22054424_SNP [dm6]	G	A	9.567e^-6	0.903	INTERGENIC
X	20339296	X_20339296_SNP [dm3] X_20468269_SNP [dm6]	G	A	9.587e^-6	0.903	UTR_5_PRIME GstT3 UPSTREAM GstT3 INTRON GstT3
3L	4141666	3L_4141666_SNP [dm3] 3L_4141666_SNP [dm6]	C	T	9.845e^-6	0.903	UPSTREAM CG32260 DOWNSTREAM Ras64B INTRON Akh
2L	14432938	2L_14432938_DEL [dm3] 2L_14432938_DEL [dm6]	GG	G	1.010e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21498923	3R_21498923_SNP [dm3] 3R_25673201_SNP [dm6]	A	T	1.011e^-5	0.903	INTRON Lgr3
2R	3471491	2R_3471491_SNP [dm3] 2R_7583986_SNP [dm6]	C	T	1.147e^-5	0.977	INTRON blow
X	11897616	X_11897616_SNP [dm3] X_12003583_SNP [dm6]	A	T	1.291e^-5	0.977	INTRON fw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1594791	2L_1594791_SNP [dm3] 2L_1594791_SNP [dm6]	T	C	1.472e^-5	0.977	DOWNSTREAM CG31935 INTRON haf
X	9916018	X_9916018_SNP [dm3] X_10021985_SNP [dm6]	A	G	1.571e^-5	0.977	INTRON Cht6
2L	14572808	2L_14572808_SNP [dm3] 2L_14572808_SNP [dm6]	A	C	1.591e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5406042	2L_5406042_SNP [dm3] 2L_5406042_SNP [dm6]	C	G	1.738e^-5	0.977	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	12585036	X_12585036_SNP [dm3] X_12691003_SNP [dm6]	T	C	1.807e^-5	0.977	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14571514	2L_14571514_SNP [dm3] 2L_14571514_SNP [dm6]	A	C	1.859e^-5	0.977	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15730257	X_15730257_SNP [dm3] X_15836224_SNP [dm6]	C	A	1.927e^-5	0.977	UPSTREAM Chc INTRON CG32582
3L	2677916	3L_2677916_SNP [dm3] 3L_2677916_SNP [dm6]	A	T	1.970e^-5	0.977	INTRON Fife
X	17644890	X_17644890_SNP [dm3] X_17750857_SNP [dm6]	T	A	2.168e^-5	0.977	INTRON CG42684	TF binding site mE1_TFBS_chinmo
2L	14604685	2L_14604685_SNP [dm3] 2L_14604685_SNP [dm6]	G	A	2.203e^-5	0.977	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	3470844	2R_3470844_SNP [dm3] 2R_7583339_SNP [dm6]	C	T	2.319e^-5	0.977	INTRON blow
3L	919538	3L_919538_SNP [dm3] 3L_919538_SNP [dm6]	C	T	2.344e^-5	0.977	INTRON Glut1
2L	10870288	2L_10870288_SNP [dm3] 2L_10870288_SNP [dm6]	G	C	2.379e^-5	0.977	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
2L	20380730	2L_20380730_SNP [dm3] 2L_20380730_SNP [dm6]	G	C	2.407e^-5	0.977	INTRON CG16798
2R	5657808	2R_5657808_SNP [dm3] 2R_9770303_SNP [dm6]	A	G	2.440e^-5	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5660224	2R_5660224_SNP [dm3] 2R_9772719_SNP [dm6]	C	A	2.440e^-5	0.977	INTRON CG1688	TF binding site mE1_TFBS_cad
2L	22046844	2L_22046844_SNP [dm3] 2L_22046844_SNP [dm6]	A	T	2.543e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	19899577	2L_19899577_SNP [dm3] 2L_19899577_SNP [dm6]	T	A	2.568e^-5	0.977	INTRON sick
2R	5668896	2R_5668896_SNP [dm3] 2R_9781391_SNP [dm6]	C	T	2.588e^-5	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13952061	2R_13952061_SNP [dm3] 2R_18064556_SNP [dm6]	A	G	2.667e^-5	0.977	INTRON CG34386
2L	15286068	2L_15286068_SNP [dm3] 2L_15286068_SNP [dm6]	T	A	2.751e^-5	0.977	DOWNSTREAM CG15263 INTERGENIC
X	20344581	X_20344581_SNP [dm3] X_20473554_SNP [dm6]	C	A	2.799e^-5	0.977	INTRON RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3124533	3L_3124533_SNP [dm3] 3L_3124533_SNP [dm6]	G	C	2.923e^-5	0.977	INTRON prominin-like
2R	5665442	2R_5665442_SNP [dm3] 2R_9777937_SNP [dm6]	A	C	3.022e^-5	0.977	INTRON CG1688
2R	13207272	2R_13207272_SNP [dm3] 2R_17319767_SNP [dm6]	G	T	3.023e^-5	0.977	INTRON mbl
2L	6290094	2L_6290094_SNP [dm3] 2L_6290094_SNP [dm6]	G	A	3.052e^-5	0.977	INTRON Ddr
2L	22052815	2L_22052815_SNP [dm3] 2L_22052815_SNP [dm6]	A	C	3.110e^-5	0.977	INTERGENIC
X	8990442	X_8990442_SNP [dm3] X_9096409_SNP [dm6]	A	T	3.164e^-5	0.977	INTRON CG7766
2R	5663617	2R_5663617_SNP [dm3] 2R_9776112_SNP [dm6]	A	G	3.169e^-5	0.977	INTRON CG1688 EXON CR44207
2R	20379369	2R_20379369_SNP [dm3] 2R_24491846_SNP [dm6]	T	C	3.251e^-5	0.977	DOWNSTREAM CG13589 INTERGENIC
2L	14574262	2L_14574262_SNP [dm3] 2L_14574262_SNP [dm6]	A	C	3.255e^-5	0.977	INTERGENIC
2L	12604856	2L_12604856_SNP [dm3] 2L_12604856_SNP [dm6]	G	C	3.464e^-5	0.977	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16509096	2L_16509096_SNP [dm3] 2L_16509096_SNP [dm6]	A	G	3.473e^-5	0.977	UTR_3_PRIME CG5953 DOWNSTREAM CG5953
3L	11649681	3L_11649681_SNP [dm3] 3L_11656581_SNP [dm6]	C	T	3.484e^-5	0.977	UPSTREAM mir-274 INTRON CG32085
3R	15951754	3R_15951754_SNP [dm3] 3R_20126032_SNP [dm6]	C	A	3.537e^-5	0.977	INTERGENIC
X	10046520	X_10046520_SNP [dm3] X_10152487_SNP [dm6]	G	A	3.570e^-5	0.977	INTRON CR44894
2R	16745102	2R_16745102_SNP [dm3] 2R_20857597_SNP [dm6]	C	G	3.606e^-5	0.977	INTERGENIC
3R	21602385	3R_21602385_SNP [dm3] 3R_25776663_SNP [dm6]	A	G	3.684e^-5	0.977	SYNONYMOUS_CODING CG17195 UPSTREAM CG17196 DOWNSTREAM CG4956
2R	13204092	2R_13204092_SNP [dm3] 2R_17316587_SNP [dm6]	C	T	3.711e^-5	0.977	INTRON mbl
2L	10588724	2L_10588724_SNP [dm3] 2L_10588724_SNP [dm6]	T	G	3.756e^-5	0.977	INTRON Trim9
2R	12227200	2R_12227200_SNP [dm3] 2R_16339695_SNP [dm6]	A	C	3.786e^-5	0.977	NON_SYNONYMOUS_CODING Hmgs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3274513	2R_3274513_SNP [dm3] 2R_7387008_SNP [dm6]	C	G	4.057e^-5	0.977	UTR_5_PRIME cos UPSTREAM CG11107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	13168118	2R_13168118_SNP [dm3] 2R_17280613_SNP [dm6]	A	T	4.059e^-5	0.977	INTRON mbl
3L	11648512	3L_11648512_SNP [dm3] 3L_11655412_SNP [dm6]	A	G	4.140e^-5	0.977	INTRON CG32085
2L	10365834	2L_10365834_SNP [dm3] 2L_10365834_SNP [dm6]	C	T	4.207e^-5	0.977	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	13725547	3R_13725547_SNP [dm3] 3R_17899825_SNP [dm6]	C	T	4.246e^-5	0.977	INTRON Rim
3R	22979292	3R_22979292_SNP [dm3] 3R_27153570_SNP [dm6]	T	C	4.250e^-5	0.977	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
2R	5664266	2R_5664266_SNP [dm3] 2R_9776761_SNP [dm6]	C	G	4.662e^-5	0.977	DOWNSTREAM CR44207 INTRON CG1688
3R	21456327	3R_21456327_SNP [dm3] 3R_25630605_SNP [dm6]	T	C	4.665e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15286188	2L_15286188_SNP [dm3] 2L_15286188_SNP [dm6]	T	G	4.680e^-5	0.977	DOWNSTREAM CG15263 INTERGENIC
2R	5646785	2R_5646785_SNP [dm3] 2R_9759280_SNP [dm6]	T	C	4.792e^-5	0.977	INTRON trpl
2R	13952078	2R_13952078_SNP [dm3] 2R_18064573_SNP [dm6]	C	T	4.884e^-5	0.977	INTRON CG34386
2R	12663959	2R_12663959_SNP [dm3] 2R_16776454_SNP [dm6]	T	C	4.923e^-5	0.977	DOWNSTREAM Arp53D INTERGENIC
3L	10359892	3L_10359892_SNP [dm3] 3L_10366792_SNP [dm6]	G	C	4.954e^-5	0.977	EXON CR44327
X	20344556	X_20344556_INS [dm3] X_20473529_INS [dm6]	A	ACA	4.957e^-5	0.977	INTRON RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15553743	2L_15553743_SNP [dm3] 2L_15553743_SNP [dm6]	A	C	5.015e^-5	0.977	INTRON kek3
3R	13725546	3R_13725546_SNP [dm3] 3R_17899824_SNP [dm6]	A	T	5.074e^-5	0.977	INTRON Rim
2R	5657605	2R_5657605_DEL [dm3] 2R_9770100_DEL [dm6]	ACCGCTGTGGTAAATTATTC...	GCCGCTGTGGTAA...	5.104e^-5	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13725553	3R_13725553_SNP [dm3] 3R_17899831_SNP [dm6]	T	G	5.228e^-5	0.977	INTRON Rim
2L	14343981	2L_14343981_SNP [dm3] 2L_14343981_SNP [dm6]	T	C	5.307e^-5	0.977	SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_cad
3L	3263488	3L_3263488_SNP [dm3] 3L_3263488_SNP [dm6]	C	G	5.479e^-5	0.977	INTRON ckd
2L	14355294	2L_14355294_SNP [dm3] 2L_14355294_SNP [dm6]	T	A	5.521e^-5	0.977	UTR_5_PRIME Rab14 UPSTREAM l_2_34Fd DOWNSTREAM CR44851	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3853079	2R_3853079_SNP [dm3] 2R_7965574_SNP [dm6]	C	T	5.653e^-5	0.977	UTR_3_PRIME nito DOWNSTREAM CG14763 INTRON nito
3R	20284796	3R_20284796_SNP [dm3] 3R_24459074_SNP [dm6]	C	A	5.813e^-5	0.977	INTERGENIC
2R	17941310	2R_17941310_SNP [dm3] 2R_22053805_SNP [dm6]	A	G	5.906e^-5	0.977	INTERGENIC
2R	5665524	2R_5665524_SNP [dm3] 2R_9778019_SNP [dm6]	G	C	5.976e^-5	0.977	INTRON CG1688
3L	11705586	3L_11705586_SNP [dm3] 3L_11712486_SNP [dm6]	T	C	6.049e^-5	0.977	UTR_3_PRIME CG14132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	8431643	X_8431643_SNP [dm3] X_8537610_SNP [dm6]	G	A	6.145e^-5	0.977	INTRON Nrg
2L	2325493	2L_2325493_DEL [dm3] 2L_2325493_DEL [dm6]	CAGATCC	C	6.192e^-5	0.977	INTRON CG9967 & 1 other
2L	15285997	2L_15285997_SNP [dm3] 2L_15285997_SNP [dm6]	A	T	6.229e^-5	0.977	UTR_3_PRIME CG15263
X	13870863	X_13870863_SNP [dm3] X_13976830_SNP [dm6]	A	T	6.297e^-5	0.977	INTRON mamo
3L	10435422	3L_10435422_SNP [dm3] 3L_10442322_SNP [dm6]	C	T	6.298e^-5	0.977	INTERGENIC
2L	14574320	2L_14574320_SNP [dm3] 2L_14574320_SNP [dm6]	G	T	6.365e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18882581	X_18882581_SNP [dm3] X_18988548_SNP [dm6]	A	T	6.414e^-5	0.977	INTRON CG43759
3L	12483361	3L_12483361_SNP [dm3] 3L_12490261_SNP [dm6]	A	G	6.513e^-5	0.977	UTR_5_PRIME CG10660 UPSTREAM CR45681 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14171440	3R_14171440_INS [dm3] 3R_18345718_INS [dm6]	C	TT	6.622e^-5	0.977	INTRON CG15803
2R	5672687	2R_5672687_SNP [dm3] 2R_9785182_SNP [dm6]	C	A	6.749e^-5	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9322451	X_9322451_SNP [dm3] X_9428418_SNP [dm6]	T	C	6.771e^-5	0.977	INTRON mgl
2R	6996065	2R_6996065_SNP [dm3] 2R_11108560_SNP [dm6]	A	T	6.816e^-5	0.977	INTRON luna
2L	20773361	2L_20773361_SNP [dm3] 2L_20773361_SNP [dm6]	A	G	6.828e^-5	0.977	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14069400	2L_14069400_SNP [dm3] 2L_14069400_SNP [dm6]	A	G	6.852e^-5	0.977	INTRON nAChRalpha5
3L	11649696	3L_11649696_SNP [dm3] 3L_11656596_SNP [dm6]	G	A	7.022e^-5	0.977	UPSTREAM mir-274 INTRON CG32085
2R	3471854	2R_3471854_SNP [dm3] 2R_7584349_SNP [dm6]	A	G	7.063e^-5	0.977	UPSTREAM blow INTRON blow
2L	10365864	2L_10365864_SNP [dm3] 2L_10365864_SNP [dm6]	A	G	7.094e^-5	0.977	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	5650382	2R_5650382_SNP [dm3] 2R_9762877_SNP [dm6]	G	A	7.201e^-5	0.977	SYNONYMOUS_CODING trpl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	5672164	2R_5672164_SNP [dm3] 2R_9784659_SNP [dm6]	G	C	7.201e^-5	0.977	INTRON CG1688
2L	8845539	2L_8845539_SNP [dm3] 2L_8845539_SNP [dm6]	G	A	7.405e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	20645702	X_20645702_SNP [dm3] X_20774675_SNP [dm6]	C	A	7.414e^-5	0.977	INTRON shakB
3R	25261936	3R_25261936_SNP [dm3] 3R_29436214_SNP [dm6]	G	A	7.438e^-5	0.977	INTRON Ptp99A
X	15730185	X_15730185_SNP [dm3] X_15836152_SNP [dm6]	T	A	7.509e^-5	0.977	UTR_5_PRIME CG32582 UPSTREAM Chc
2L	2920005	2L_2920005_INS [dm3] 2L_2920005_INS [dm6]	A	AA	7.655e^-5	0.977	INTRON lilli
3R	3895650	3R_3895650_SNP [dm3] 3R_8069928_SNP [dm6]	G	A	7.691e^-5	0.977	INTRON mAChR-B
3L	13772647	3L_13772647_SNP [dm3] 3L_13779547_SNP [dm6]	A	T	7.717e^-5	0.977	INTRON bru-3
3R	14431757	3R_14431757_SNP [dm3] 3R_18606035_SNP [dm6]	G	C	7.758e^-5	0.977	INTRON qin & 1 other
3L	11648949	3L_11648949_SNP [dm3] 3L_11655849_SNP [dm6]	T	G	7.793e^-5	0.977	INTRON CG32085
2L	11010556	2L_11010556_SNP [dm3] 2L_11010556_SNP [dm6]	G	A	7.815e^-5	0.977	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	3007354	2L_3007354_SNP [dm3] 2L_3007354_SNP [dm6]	G	T	7.873e^-5	0.977	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3317150	3L_3317150_INS [dm3] 3L_3317150_INS [dm6]	A	AACAATTATTATGA...	7.895e^-5	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
3L	2675414	3L_2675414_SNP [dm3] 3L_2675414_SNP [dm6]	G	A	7.910e^-5	0.977	INTRON Fife
2L	20358721	2L_20358721_SNP [dm3] 2L_20358721_SNP [dm6]	G	C	7.913e^-5	0.977	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	893698	3L_893698_SNP [dm3] 3L_893698_SNP [dm6]	T	C	8.025e^-5	0.977	UTR_3_PRIME CG32479 DOWNSTREAM CG32479
X	5290814	X_5290814_DEL [dm3] X_5396781_DEL [dm6]	GG	G	8.134e^-5	0.977	UTR_3_PRIME SK INTRON SK
2L	4761712	2L_4761712_SNP [dm3] 2L_4761712_SNP [dm6]	C	T	8.146e^-5	0.977	INTRON CG15630
X	6886158	X_6886158_SNP [dm3] X_6992125_SNP [dm6]	G	A	8.166e^-5	0.977	UPSTREAM ogre INTRON Inx7	TF binding site mE1_TFBS_sens
2L	16576908	2L_16576908_SNP [dm3] 2L_16576908_SNP [dm6]	G	A	8.420e^-5	0.977	INTRON CG42389
2R	12877834	2R_12877834_SNP [dm3] 2R_16990329_SNP [dm6]	G	C	8.483e^-5	0.977	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20354629	2L_20354629_SNP [dm3] 2L_20354629_SNP [dm6]	G	A	8.545e^-5	0.977	INTRON RtGEF
2L	22054978	2L_22054978_SNP [dm3] 2L_22054978_SNP [dm6]	T	A	8.588e^-5	0.977	UPSTREAM CG34173 INTERGENIC
2L	9136051	2L_9136051_SNP [dm3] 2L_9136051_SNP [dm6]	G	T	8.602e^-5	0.977	INTRON CG32982
2R	10425310	2R_10425310_SNP [dm3] 2R_14537805_SNP [dm6]	A	G	8.626e^-5	0.977	INTRON ttv
2L	20358504	2L_20358504_SNP [dm3] 2L_20358504_SNP [dm6]	G	A	8.759e^-5	0.977	SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3472412	2R_3472412_SNP [dm3] 2R_7584907_SNP [dm6]	A	T	8.906e^-5	0.977	UPSTREAM blow INTRON blow
2L	14604520	2L_14604520_SNP [dm3] 2L_14604520_SNP [dm6]	G	A	8.959e^-5	0.977	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24274181	3R_24274181_SNP [dm3] 3R_28448459_SNP [dm6]	A	G	8.996e^-5	0.977	INTRON beat-VI
3L	3141074	3L_3141074_SNP [dm3] 3L_3141074_SNP [dm6]	A	G	9.024e^-5	0.977	INTRON CG11537	TF binding site mE1_TFBS_HSA
2R	13167861	2R_13167861_SNP [dm3] 2R_17280356_SNP [dm6]	C	T	9.054e^-5	0.977	INTRON mbl
2L	6454239	2L_6454239_SNP [dm3] 2L_6454239_SNP [dm6]	C	A	9.076e^-5	0.977	INTRON retm
X	11547309	X_11547309_SNP [dm3] X_11653276_SNP [dm6]	G	T	9.148e^-5	0.977	INTRON Ptp10D
3R	14614171	3R_14614171_SNP [dm3] 3R_18788449_SNP [dm6]	T	G	9.151e^-5	0.977	INTRON CG7720
2L	7968223	2L_7968223_SNP [dm3] 2L_7968223_SNP [dm6]	G	A	9.500e^-5	0.977	INTRON Snoo
2L	3447263	2L_3447263_SNP [dm3] 2L_3447263_SNP [dm6]	A	G	9.606e^-5	0.977	SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7670519	2L_7670519_DEL [dm3] 2L_7670519_DEL [dm6]	TT	T	9.622e^-5	0.977	INTRON Slob & 1 other
2L	14359664	2L_14359664_SNP [dm3] 2L_14359664_SNP [dm6]	G	C	9.630e^-5	0.977	SYNONYMOUS_CODING Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	16384930	2L_16384930_SNP [dm3] 2L_16384930_SNP [dm6]	T	A	9.767e^-5	0.977	INTERGENIC
2L	4672592	2L_4672592_SNP [dm3] 2L_4672592_SNP [dm6]	C	A	9.768e^-5	0.977	INTERGENIC
2L	4672593	2L_4672593_SNP [dm3] 2L_4672593_SNP [dm6]	A	T	9.768e^-5	0.977	INTERGENIC
3L	1132433	3L_1132433_SNP [dm3] 3L_1132433_SNP [dm6]	T	A	9.806e^-5	0.977	INTERGENIC	regulatory region REDfly_CRMs
X	11547283	X_11547283_SNP [dm3] X_11653250_SNP [dm6]	C	T	9.906e^-5	0.977	INTRON Ptp10D
2L	5443932	2L_5443932_SNP [dm3] 2L_5443932_SNP [dm6]	T	G	9.952e^-5	0.977	INTERGENIC
2L	4807177	2L_4807177_SNP [dm3] 2L_4807177_SNP [dm6]	T	G	9.998e^-5	0.977	INTERGENIC
3R	8153930	3R_8153930_SNP [dm3] 3R_12328208_SNP [dm6]	T	C	1.013e^-4	0.977	DOWNSTREAM CR45584 INTERGENIC
2L	19551934	2L_19551934_SNP [dm3] 2L_19551934_SNP [dm6]	C	T	1.015e^-4	0.977	SYNONYMOUS_CODING Tep4	TF binding site mE1_TFBS_HSA
3L	893572	3L_893572_SNP [dm3] 3L_893572_SNP [dm6]	G	A	1.015e^-4	0.977	UTR_3_PRIME CG32479 DOWNSTREAM CG32479
X	20339355	X_20339355_SNP [dm3] X_20468328_SNP [dm6]	C	G	1.017e^-4	0.977	START_GAINED GstT3 UTR_5_PRIME GstT3 UPSTREAM GstT3 INTRON GstT3
X	20645741	X_20645741_SNP [dm3] X_20774714_SNP [dm6]	T	A	1.029e^-4	0.977	INTRON shakB
2R	3844785	2R_3844785_SNP [dm3] 2R_7957280_SNP [dm6]	G	T	1.035e^-4	0.977	NON_SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9099655	2L_9099655_SNP [dm3] 2L_9099655_SNP [dm6]	A	T	1.038e^-4	0.977	EXON CR44482
3R	4170329	3R_4170329_SNP [dm3] 3R_8344607_SNP [dm6]	G	C	1.039e^-4	0.977	DOWNSTREAM CG18193 INTRON DppIII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	16509129	2L_16509129_DEL [dm3] 2L_16509129_DEL [dm6]	TATTTCTGC	T	1.042e^-4	0.977	UTR_3_PRIME CG5953
3R	19153632	3R_19153632_SNP [dm3] 3R_23327910_SNP [dm6]	C	G	1.043e^-4	0.977	INTRON pnt
X	14706078	X_14706078_SNP [dm3] X_14812045_SNP [dm6]	A	G	1.047e^-4	0.977	INTRON rut
2L	12581726	2L_12581726_SNP [dm3] 2L_12581726_SNP [dm6]	C	T	1.055e^-4	0.977	UPSTREAM CR44595 INTRON CR44596
2L	13074459	2L_13074459_SNP [dm3] 2L_13074459_SNP [dm6]	A	C	1.055e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
X	17410828	X_17410828_DEL [dm3] X_17516795_DEL [dm6]	AA	A	1.072e^-4	0.977	INTRON CG43658
X	12674836	X_12674836_SNP [dm3] X_12780803_SNP [dm6]	A	G	1.081e^-4	0.977	INTRON CG32647
2R	6002201	2R_6002201_SNP [dm3] 2R_10114696_SNP [dm6]	T	A	1.093e^-4	0.977	INTRON Pfk
2L	10870246	2L_10870246_SNP [dm3] 2L_10870246_SNP [dm6]	A	C	1.093e^-4	0.977	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5649133	2R_5649133_SNP [dm3] 2R_9761628_SNP [dm6]	G	A	1.096e^-4	0.977	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21455025	3R_21455025_SNP [dm3] 3R_25629303_SNP [dm6]	A	G	1.097e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	19562857	3R_19562857_SNP [dm3] 3R_23737135_SNP [dm6]	A	C	1.099e^-4	0.977	INTRON Hmgcr	TF binding site mE1_TFBS_HSA
2R	16744840	2R_16744840_SNP [dm3] 2R_20857335_SNP [dm6]	T	A	1.104e^-4	0.977	INTERGENIC
2R	14116309	2R_14116309_SNP [dm3] 2R_18228804_SNP [dm6]	T	G	1.110e^-4	0.977	DOWNSTREAM CR45310 EXON CR45311
2L	10724394	2L_10724394_SNP [dm3] 2L_10724394_SNP [dm6]	T	C	1.126e^-4	0.977	INTRON CG6431
2R	5657869	2R_5657869_INS [dm3] 2R_9770364_INS [dm6]	T	TT	1.130e^-4	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13117335	2L_13117335_SNP [dm3] 2L_13117335_SNP [dm6]	C	G	1.132e^-4	0.977	INTERGENIC
2L	20389592	2L_20389592_SNP [dm3] 2L_20389592_SNP [dm6]	G	T	1.132e^-4	0.977	INTRON CG10947
3L	10179410	3L_10179410_SNP [dm3] 3L_10186310_SNP [dm6]	C	G	1.140e^-4	0.977	UPSTREAM dpr10 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2251644	3L_2251644_SNP [dm3] 3L_2251644_SNP [dm6]	A	G	1.147e^-4	0.977	SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
X	5703221	X_5703221_SNP [dm3] X_5809188_SNP [dm6]	G	A	1.148e^-4	0.977	SYNONYMOUS_CODING Prosbeta2R1	TF binding site mE1_TFBS_chinmo
2L	20356549	2L_20356549_SNP [dm3] 2L_20356549_SNP [dm6]	T	A	1.149e^-4	0.977	INTRON RtGEF	TF binding site mE1_TFBS_cad
X	9343092	X_9343092_SNP [dm3] X_9449059_SNP [dm6]	A	T	1.153e^-4	0.977	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7282614	2R_7282614_SNP [dm3] 2R_11395109_SNP [dm6]	T	C	1.157e^-4	0.977	DOWNSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15951755	3R_15951755_SNP [dm3] 3R_20126033_SNP [dm6]	G	A	1.164e^-4	0.977	INTERGENIC
2L	14122927	2L_14122927_SNP [dm3] 2L_14122927_SNP [dm6]	C	T	1.172e^-4	0.977	INTERGENIC
2L	14122930	2L_14122930_SNP [dm3] 2L_14122930_SNP [dm6]	G	A	1.172e^-4	0.977	INTERGENIC
3R	22607619	3R_22607619_SNP [dm3] 3R_26781897_SNP [dm6]	T	A	1.176e^-4	0.977	INTERGENIC
3R	26081461	3R_26081461_SNP [dm3] 3R_30255739_SNP [dm6]	T	C	1.181e^-4	0.977	INTERGENIC
3L	12720144	3L_12720144_SNP [dm3] 3L_12727044_SNP [dm6]	C	G	1.187e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2560085	3L_2560085_SNP [dm3] 3L_2560085_SNP [dm6]	T	A	1.190e^-4	0.977	INTRON msn
2L	14580200	2L_14580200_SNP [dm3] 2L_14580200_SNP [dm6]	T	A	1.220e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	22070537	2L_22070537_SNP [dm3] 2L_22070537_SNP [dm6]	C	A	1.221e^-4	0.977	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase
2L	12393877	2L_12393877_SNP [dm3] 2L_12393877_SNP [dm6]	C	A	1.228e^-4	0.977	INTRON bru-2
3R	25559540	3R_25559540_SNP [dm3] 3R_29733818_SNP [dm6]	C	A	1.231e^-4	0.977	UTR_3_PRIME Kul
3R	23729470	3R_23729470_SNP [dm3] 3R_27903748_SNP [dm6]	G	A	1.244e^-4	0.977	INTRON CG34353
3L	10422639	3L_10422639_SNP [dm3] 3L_10429539_SNP [dm6]	T	C	1.250e^-4	0.977	DOWNSTREAM Ir67b INTERGENIC
3L	2677856	3L_2677856_SNP [dm3] 3L_2677856_SNP [dm6]	A	C	1.254e^-4	0.977	INTRON Fife
3L	10068303	3L_10068303_SNP [dm3] 3L_10075203_SNP [dm6]	C	A	1.256e^-4	0.977	INTRON dpr6	TF binding site mE1_TFBS_run
2R	14101553	2R_14101553_SNP [dm3] 2R_18214048_SNP [dm6]	G	C	1.257e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12394061	2L_12394061_SNP [dm3] 2L_12394061_SNP [dm6]	C	A	1.266e^-4	0.977	INTRON bru-2
X	15192903	X_15192903_DEL [dm3] X_15298870_DEL [dm6]	AGCGTGAGTGGA...	A	1.271e^-4	0.977	UPSTREAM gce & 1 other INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10611874	2L_10611874_SNP [dm3] 2L_10611874_SNP [dm6]	A	G	1.277e^-4	0.977	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24274500	3R_24274500_SNP [dm3] 3R_28448778_SNP [dm6]	C	T	1.280e^-4	0.977	INTRON beat-VI	TF binding site mE1_TFBS_inv
2R	5663026	2R_5663026_DEL [dm3] 2R_9775521_DEL [dm6]	ACGGTTA	A	1.284e^-4	0.977	INTRON CG1688 EXON CR44207
3R	14614152	3R_14614152_INS [dm3] 3R_18788430_INS [dm6]	G	GTGG	1.286e^-4	0.977	INTRON CG7720
2R	13145766	2R_13145766_SNP [dm3] 2R_17258261_SNP [dm6]	G	T	1.287e^-4	0.977	UPSTREAM CG43108 INTRON mbl
X	5291464	X_5291464_SNP [dm3] X_5397431_SNP [dm6]	T	A	1.294e^-4	0.977	DOWNSTREAM SK INTRON SK
3L	10015847	3L_10015847_SNP [dm3] 3L_10022747_SNP [dm6]	A	G	1.295e^-4	0.977	INTRON dpr6
3R	15895360	3R_15895360_SNP [dm3] 3R_20069638_SNP [dm6]	T	A	1.297e^-4	0.977	INTERGENIC
2R	5647867	2R_5647867_DEL [dm3] 2R_9760362_DEL [dm6]	TT	T	1.304e^-4	0.977	INTRON trpl
3R	15951732	3R_15951732_SNP [dm3] 3R_20126010_SNP [dm6]	T	G	1.309e^-4	0.977	INTERGENIC
2L	13124732	2L_13124732_SNP [dm3] 2L_13124732_SNP [dm6]	G	T	1.312e^-4	0.977	INTERGENIC
X	4576835	X_4576835_SNP [dm3] X_4682802_SNP [dm6]	A	G	1.326e^-4	0.977	NON_SYNONYMOUS_CODING Pp2C1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7235526	2L_7235526_SNP [dm3] 2L_7235526_SNP [dm6]	T	G	1.329e^-4	0.977	INTRON Ndae1
3R	15951749	3R_15951749_DEL [dm3] 3R_20126027_DEL [dm6]	AT	A	1.333e^-4	0.977	INTERGENIC
2L	976267	2L_976267_SNP [dm3] 2L_976267_SNP [dm6]	G	C	1.344e^-4	0.977	INTERGENIC
3L	8711926	3L_8711926_SNP [dm3] 3L_8718826_SNP [dm6]	G	T	1.359e^-4	0.977	DOWNSTREAM SrpRbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18796425	2R_18796425_SNP [dm3] 2R_22908902_SNP [dm6]	C	G	1.364e^-4	0.977	INTRON nahoda
3L	10458150	3L_10458150_SNP [dm3] 3L_10465050_SNP [dm6]	T	A	1.380e^-4	0.977	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTERGENIC
2L	12394059	2L_12394059_SNP [dm3] 2L_12394059_SNP [dm6]	A	G	1.381e^-4	0.977	INTRON bru-2
X	11265066	X_11265066_SNP [dm3] X_11371033_SNP [dm6]	A	C	1.384e^-4	0.977	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3317215	3L_3317215_SNP [dm3] 3L_3317215_SNP [dm6]	A	C	1.387e^-4	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
2L	5405331	2L_5405331_SNP [dm3] 2L_5405331_SNP [dm6]	G	T	1.390e^-4	0.977	INTRON H15
2L	10580955	2L_10580955_SNP [dm3] 2L_10580955_SNP [dm6]	T	C	1.401e^-4	0.977	DOWNSTREAM CG34161 & 1 other INTRON Trim9
3R	26081463	3R_26081463_INS [dm3] 3R_30255741_INS [dm6]	T	TG	1.417e^-4	0.977	INTERGENIC
3R	14695559	3R_14695559_SNP [dm3] 3R_18869837_SNP [dm6]	T	A	1.418e^-4	0.977	INTERGENIC
3L	835589	3L_835589_SNP [dm3] 3L_835589_SNP [dm6]	A	C	1.431e^-4	0.977	UPSTREAM CG42554 DOWNSTREAM CG42553 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8532459	2R_8532459_INS [dm3] 2R_12644954_INS [dm6]	T	TA	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532464	2R_8532464_SNP [dm3] 2R_12644959_SNP [dm6]	A	T	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532468	2R_8532468_MNP [dm3] 2R_12644963_MNP [dm6]	AAC	TTT	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532471	2R_8532471_INS [dm3] 2R_12644966_INS [dm6]	A	ATTTATTT	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532473	2R_8532473_SNP [dm3] 2R_12644968_SNP [dm6]	C	T	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8532474	2R_8532474_SNP [dm3] 2R_12644969_SNP [dm6]	A	T	1.431e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11827904	2L_11827904_SNP [dm3] 2L_11827904_SNP [dm6]	A	G	1.431e^-4	0.977	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2L	11827853	2L_11827853_SNP [dm3] 2L_11827853_SNP [dm6]	G	A	1.435e^-4	0.977	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2L	10579100	2L_10579100_SNP [dm3] 2L_10579100_SNP [dm6]	A	T	1.437e^-4	0.977	UPSTREAM CG34160 INTRON Trim9
2R	17821127	2R_17821127_INS [dm3] 2R_21933622_INS [dm6]	A	AA	1.440e^-4	0.977	INTRON Fili
2L	14575400	2L_14575400_SNP [dm3] 2L_14575400_SNP [dm6]	C	T	1.446e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	3771981	X_3771981_SNP [dm3] X_3877948_SNP [dm6]	G	T	1.447e^-4	0.977	SYNONYMOUS_CODING CG2930 INTRON CG2930
2R	17942116	2R_17942116_SNP [dm3] 2R_22054611_SNP [dm6]	A	C	1.473e^-4	0.977	INTERGENIC
2R	5861507	2R_5861507_SNP [dm3] 2R_9974002_SNP [dm6]	T	C	1.478e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	4205941	3R_4205941_SNP [dm3] 3R_8380219_SNP [dm6]	C	G	1.486e^-4	0.977	INTRON CG45263
3L	10015363	3L_10015363_SNP [dm3] 3L_10022263_SNP [dm6]	A	T	1.491e^-4	0.977	INTRON dpr6
2R	5655260	2R_5655260_SNP [dm3] 2R_9767755_SNP [dm6]	A	G	1.498e^-4	0.977	DOWNSTREAM CR44205 INTRON CG1688	TF binding site mE1_TFBS_inv
2L	6872114	2L_6872114_SNP [dm3] 2L_6872114_SNP [dm6]	C	T	1.507e^-4	0.977	SPLICE_SITE_DONOR CR44915 UPSTREAM CR44914 INTRON CR44915
2L	6197392	2L_6197392_SNP [dm3] 2L_6197392_SNP [dm6]	C	G	1.507e^-4	0.977	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2116514	3L_2116514_SNP [dm3] 3L_2116514_SNP [dm6]	C	T	1.510e^-4	0.977	UPSTREAM sls DOWNSTREAM zormin INTERGENIC
2L	14595438	2L_14595438_SNP [dm3] 2L_14595438_SNP [dm6]	C	A	1.510e^-4	0.977	INTERGENIC
3R	15951746	3R_15951746_SNP [dm3] 3R_20126024_SNP [dm6]	G	C	1.521e^-4	0.977	INTERGENIC
2L	16384876	2L_16384876_SNP [dm3] 2L_16384876_SNP [dm6]	T	G	1.523e^-4	0.977	INTERGENIC
3R	15895404	3R_15895404_SNP [dm3] 3R_20069682_SNP [dm6]	A	G	1.529e^-4	0.977	INTERGENIC
2R	17942326	2R_17942326_SNP [dm3] 2R_22054821_SNP [dm6]	C	A	1.547e^-4	0.977	INTERGENIC
2R	17942327	2R_17942327_SNP [dm3] 2R_22054822_SNP [dm6]	G	A	1.547e^-4	0.977	INTERGENIC
2R	5662473	2R_5662473_SNP [dm3] 2R_9774968_SNP [dm6]	C	T	1.548e^-4	0.977	UPSTREAM CR44207 INTRON CG1688
2R	5662492	2R_5662492_SNP [dm3] 2R_9774987_SNP [dm6]	C	G	1.548e^-4	0.977	UPSTREAM CR44207 INTRON CG1688
3R	20286678	3R_20286678_SNP [dm3] 3R_24460956_SNP [dm6]	C	G	1.555e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8532461	2R_8532461_SNP [dm3] 2R_12644956_SNP [dm6]	A	T	1.574e^-4	0.977	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17563128	2L_17563128_SNP [dm3] 2L_17563128_SNP [dm6]	A	T	1.587e^-4	0.977	INTERGENIC
3L	10064665	3L_10064665_SNP [dm3] 3L_10071565_SNP [dm6]	A	C	1.593e^-4	0.977	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3688512	2L_3688512_SNP [dm3] 2L_3688512_SNP [dm6]	G	T	1.593e^-4	0.977	INTRON CG34340
X	18882579	X_18882579_SNP [dm3] X_18988546_SNP [dm6]	C	T	1.594e^-4	0.977	INTRON CG43759
2L	3688465	2L_3688465_SNP [dm3] 2L_3688465_SNP [dm6]	T	A	1.601e^-4	0.977	INTRON CG34340
2L	1121647	2L_1121647_SNP [dm3] 2L_1121647_SNP [dm6]	G	A	1.603e^-4	0.977	INTRON Pino
3L	10350778	3L_10350778_SNP [dm3] 3L_10357678_SNP [dm6]	C	G	1.607e^-4	0.977	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20382329	2R_20382329_SNP [dm3] 2R_24494806_SNP [dm6]	T	C	1.607e^-4	0.977	SYNONYMOUS_CODING Crtp UPSTREAM CG13590	TF binding site mE1_TFBS_chinmo
3L	1032934	3L_1032934_SNP [dm3] 3L_1032934_SNP [dm6]	G	A	1.612e^-4	0.977	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10365852	2L_10365852_SNP [dm3] 2L_10365852_SNP [dm6]	C	T	1.614e^-4	0.977	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	12999492	X_12999492_SNP [dm3] X_13105459_SNP [dm6]	A	G	1.615e^-4	0.977	INTRON CG43313
2R	9308056	2R_9308056_SNP [dm3] 2R_13420551_SNP [dm6]	G	A	1.625e^-4	0.977	SYNONYMOUS_CODING CG42321
3L	2772467	3L_2772467_SNP [dm3] 3L_2772467_SNP [dm6]	A	T	1.641e^-4	0.977	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10365915	2L_10365915_SNP [dm3] 2L_10365915_SNP [dm6]	G	A	1.647e^-4	0.977	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	4246058	3L_4246058_SNP [dm3] 3L_4246058_SNP [dm6]	G	T	1.649e^-4	0.977	UTR_3_PRIME pav DOWNSTREAM ago
2R	11702110	2R_11702110_SNP [dm3] 2R_15814605_SNP [dm6]	A	T	1.658e^-4	0.977	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	16581131	X_16581131_SNP [dm3] X_16687098_SNP [dm6]	G	A	1.670e^-4	0.977	INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14660338	2R_14660338_SNP [dm3] 2R_18772833_SNP [dm6]	C	T	1.673e^-4	0.977	SYNONYMOUS_CODING Mctp
2L	2509404	2L_2509404_SNP [dm3] 2L_2509404_SNP [dm6]	A	G	1.677e^-4	0.977	INTERGENIC
X	14131848	X_14131848_SNP [dm3] X_14237815_SNP [dm6]	G	A	1.699e^-4	0.977	UTR_5_PRIME Fbxl4 UPSTREAM CG1434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	9171514	2L_9171514_SNP [dm3] 2L_9171514_SNP [dm6]	G	A	1.716e^-4	0.977	INTRON tai
2L	4134264	2L_4134264_SNP [dm3] 2L_4134264_SNP [dm6]	T	G	1.719e^-4	0.977	INTERGENIC
2R	5646064	2R_5646064_SNP [dm3] 2R_9758559_SNP [dm6]	C	T	1.721e^-4	0.977	UPSTREAM CG1690 INTRON trpl
2R	6996054	2R_6996054_SNP [dm3] 2R_11108549_SNP [dm6]	A	G	1.726e^-4	0.977	INTRON luna
2L	12200920	2L_12200920_SNP [dm3] 2L_12200920_SNP [dm6]	T	A	1.730e^-4	0.977	UPSTREAM aret INTRON aret
3L	3138231	3L_3138231_SNP [dm3] 3L_3138231_SNP [dm6]	T	G	1.740e^-4	0.977	INTRON CG11537
2L	882783	2L_882783_SNP [dm3] 2L_882783_SNP [dm6]	A	T	1.741e^-4	0.977	NON_SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	4576837	X_4576837_SNP [dm3] X_4682804_SNP [dm6]	G	A	1.742e^-4	0.977	SYNONYMOUS_CODING Pp2C1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13202815	2R_13202815_SNP [dm3] 2R_17315310_SNP [dm6]	G	A	1.746e^-4	0.977	INTRON mbl
2R	13202850	2R_13202850_SNP [dm3] 2R_17315345_SNP [dm6]	C	T	1.746e^-4	0.977	INTRON mbl
2L	9224090	2L_9224090_SNP [dm3] 2L_9224090_SNP [dm6]	A	G	1.751e^-4	0.977	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	1357766	2L_1357766_SNP [dm3] 2L_1357766_SNP [dm6]	A	T	1.757e^-4	0.977	INTERGENIC
2L	16545876	2L_16545876_SNP [dm3] 2L_16545876_SNP [dm6]	C	T	1.761e^-4	0.977	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	20284693	3R_20284693_SNP [dm3] 3R_24458971_SNP [dm6]	A	G	1.780e^-4	0.977	INTERGENIC
3L	14381746	3L_14381746_SNP [dm3] 3L_14388646_SNP [dm6]	T	A	1.786e^-4	0.977	INTERGENIC
3R	23034228	3R_23034228_SNP [dm3] 3R_27208506_SNP [dm6]	T	C	1.795e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11689492	3L_11689492_SNP [dm3] 3L_11696392_SNP [dm6]	G	A	1.802e^-4	0.977	UTR_5_PRIME CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3317451	3L_3317451_SNP [dm3] 3L_3317451_SNP [dm6]	C	T	1.805e^-4	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
3L	8688149	3L_8688149_SNP [dm3] 3L_8695049_SNP [dm6]	G	T	1.813e^-4	0.977	INTERGENIC
2R	5657729	2R_5657729_SNP [dm3] 2R_9770224_SNP [dm6]	G	C	1.818e^-4	0.977	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14472157	X_14472157_SNP [dm3] X_14578124_SNP [dm6]	T	A	1.832e^-4	0.977	INTERGENIC
3L	3260632	3L_3260632_SNP [dm3] 3L_3260632_SNP [dm6]	C	T	1.833e^-4	0.977	INTRON ckd
2L	10150746	2L_10150746_SNP [dm3] 2L_10150746_SNP [dm6]	C	T	1.834e^-4	0.977	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	19562343	2L_19562343_SNP [dm3] 2L_19562343_SNP [dm6]	T	C	1.838e^-4	0.977	SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_sens
3L	3858354	3L_3858354_SNP [dm3] 3L_3858354_SNP [dm6]	A	C	1.843e^-4	0.977	INTRON Awh	TF binding site mE1_TFBS_cad
X	8958604	X_8958604_INS [dm3] X_9064571_INS [dm6]	T	TGTAT	1.851e^-4	0.977	INTRON CG15365
3R	25198489	3R_25198489_INS [dm3] 3R_29372767_INS [dm6]	A	ATT	1.856e^-4	0.977	INTERGENIC
2L	21190277	2L_21190277_SNP [dm3] 2L_21190277_SNP [dm6]	A	G	1.890e^-4	0.977	INTRON Ret
2L	6872001	2L_6872001_SNP [dm3] 2L_6872001_SNP [dm6]	C	G	1.893e^-4	0.977	UPSTREAM CR44914 INTRON CR44915
2L	6873189	2L_6873189_SNP [dm3] 2L_6873189_SNP [dm6]	C	T	1.893e^-4	0.977	UPSTREAM CR44915 EXON CR44914
2L	6873588	2L_6873588_SNP [dm3] 2L_6873588_SNP [dm6]	G	T	1.893e^-4	0.977	INTRON CR44914
3L	11668849	3L_11668849_SNP [dm3] 3L_11675749_SNP [dm6]	T	A	1.894e^-4	0.977	INTRON CG32085	TF binding site mE1_TFBS_cad
2R	3844624	2R_3844624_SNP [dm3] 2R_7957119_SNP [dm6]	G	A	1.904e^-4	0.977	SYNONYMOUS_CODING CG2906	TF binding site mE1_TFBS_sens
2R	13206352	2R_13206352_SNP [dm3] 2R_17318847_SNP [dm6]	G	T	1.915e^-4	0.977	INTRON mbl
2R	13202858	2R_13202858_SNP [dm3] 2R_17315353_SNP [dm6]	A	G	1.919e^-4	0.977	INTRON mbl
X	12674459	X_12674459_SNP [dm3] X_12780426_SNP [dm6]	G	T	1.935e^-4	0.977	INTRON CG32647
3L	7428958	3L_7428958_SNP [dm3] 3L_7435858_SNP [dm6]	C	T	1.937e^-4	0.977	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	10873734	X_10873734_SNP [dm3] X_10979701_SNP [dm6]	C	A	1.941e^-4	0.977	INTRON CG42339
2R	11702098	2R_11702098_SNP [dm3] 2R_15814593_SNP [dm6]	A	G	1.948e^-4	0.977	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4636405	3L_4636405_SNP [dm3] 3L_4636405_SNP [dm6]	C	T	1.953e^-4	0.977	DOWNSTREAM axo INTRON axo
X	21952681	X_21952681_INS [dm3] X_22550845_INS [dm6]	T	TCGGAATCGGATT...	1.955e^-4	0.977	INTERGENIC
2L	5073946	2L_5073946_SNP [dm3] 2L_5073946_SNP [dm6]	G	T	1.967e^-4	0.977	SYNONYMOUS_CODING pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7630468	2R_7630468_INS [dm3] 2R_11742963_INS [dm6]	A	TTT	1.967e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14172408	3R_14172408_INS [dm3] 3R_18346686_INS [dm6]	G	AGA	1.971e^-4	0.977	INTRON CG15803
2L	11827898	2L_11827898_SNP [dm3] 2L_11827898_SNP [dm6]	T	A	1.978e^-4	0.977	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2R	17527684	2R_17527684_SNP [dm3] 2R_21640179_SNP [dm6]	G	T	1.979e^-4	0.977	INTERGENIC
X	16956753	X_16956753_SNP [dm3] X_17062720_SNP [dm6]	T	A	1.981e^-4	0.977	INTRON CG45002
2L	9063993	2L_9063993_SNP [dm3] 2L_9063993_SNP [dm6]	C	G	1.982e^-4	0.977	INTRON CG31708	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22109944	3R_22109944_SNP [dm3] 3R_26284222_SNP [dm6]	T	G	1.986e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14896499	2L_14896499_SNP [dm3] 2L_14896499_SNP [dm6]	G	T	1.986e^-4	0.977	INTERGENIC
3R	26086201	3R_26086201_SNP [dm3] 3R_30260479_SNP [dm6]	G	A	1.989e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2772443	3L_2772443_SNP [dm3] 3L_2772443_SNP [dm6]	C	A	1.996e^-4	0.977	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2772446	3L_2772446_SNP [dm3] 3L_2772446_SNP [dm6]	T	C	1.996e^-4	0.977	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14092081	2L_14092081_SNP [dm3] 2L_14092081_SNP [dm6]	G	A	1.997e^-4	0.977	UTR_3_PRIME nAChRalpha5
3R	20284688	3R_20284688_SNP [dm3] 3R_24458966_SNP [dm6]	C	T	2.004e^-4	0.977	INTERGENIC
2R	20383829	2R_20383829_SNP [dm3] 2R_24496306_SNP [dm6]	T	C	2.009e^-4	0.977	NON_SYNONYMOUS_CODING Crtp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10422642	3L_10422642_SNP [dm3] 3L_10429542_SNP [dm6]	T	A	2.017e^-4	0.977	DOWNSTREAM Ir67b INTERGENIC
2R	20381191	2R_20381191_SNP [dm3] 2R_24493668_SNP [dm6]	A	T	2.019e^-4	0.977	NON_SYNONYMOUS_CODING CG13590 UPSTREAM CG13589 & 1 other
2L	1121029	2L_1121029_SNP [dm3] 2L_1121029_SNP [dm6]	G	A	2.022e^-4	0.977	INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1284980	3L_1284980_SNP [dm3] 3L_1284980_SNP [dm6]	A	G	2.034e^-4	0.977	SYNONYMOUS_CODING CG32333
3L	1552029	3L_1552029_SNP [dm3] 3L_1552029_SNP [dm6]	T	C	2.037e^-4	0.977	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20357931	2L_20357931_SNP [dm3] 2L_20357931_SNP [dm6]	G	T	2.038e^-4	0.977	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_sens
2R	715472	2R_715472_SNP [dm3] 2R_4827967_SNP [dm6]	T	G	2.040e^-4	0.977	INTERGENIC	transposable element FlyBase
2L	6277094	2L_6277094_SNP [dm3] 2L_6277094_SNP [dm6]	T	G	2.046e^-4	0.977	INTRON Ddr
X	22080234	X_22080234_INS [dm3] X_22678398_INS [dm6]	T	TCGT	2.048e^-4	0.977	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5660022	2R_5660022_SNP [dm3] 2R_9772517_SNP [dm6]	C	A	2.048e^-4	0.977	INTRON CG1688	TF binding site mE1_TFBS_cad
2L	11881869	2L_11881869_SNP [dm3] 2L_11881869_SNP [dm6]	A	G	2.053e^-4	0.977	INTRON Pde1c
X	13996305	X_13996305_SNP [dm3] X_14102272_SNP [dm6]	A	C	2.062e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26935775	3R_26935775_SNP [dm3] 3R_31110053_SNP [dm6]	T	A	2.063e^-4	0.977	UPSTREAM CG11318 INTERGENIC
2L	19817031	2L_19817031_SNP [dm3] 2L_19817031_SNP [dm6]	A	T	2.068e^-4	0.977	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8004845	2R_8004845_SNP [dm3] 2R_12117340_SNP [dm6]	G	A	2.070e^-4	0.977	SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13851834	3L_13851834_SNP [dm3] 3L_13858734_SNP [dm6]	A	T	2.073e^-4	0.977	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9171510	2L_9171510_SNP [dm3] 2L_9171510_SNP [dm6]	C	A	2.081e^-4	0.977	INTRON tai
3R	4162796	3R_4162796_SNP [dm3] 3R_8337074_SNP [dm6]	A	G	2.085e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14604571	2L_14604571_SNP [dm3] 2L_14604571_SNP [dm6]	T	C	2.087e^-4	0.977	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	14580271	2L_14580271_SNP [dm3] 2L_14580271_SNP [dm6]	C	T	2.093e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	12951187	X_12951187_SNP [dm3] X_13057154_SNP [dm6]	A	G	2.103e^-4	0.977	INTRON rad
X	5703508	X_5703508_SNP [dm3] X_5809475_SNP [dm6]	C	T	2.104e^-4	0.977	SYNONYMOUS_CODING Prosbeta2R1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5854518	2R_5854518_SNP [dm3] 2R_9967013_SNP [dm6]	T	C	2.125e^-4	0.977	UPSTREAM CG12133 INTERGENIC
X	11675961	X_11675961_SNP [dm3] X_11781928_SNP [dm6]	C	T	2.133e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17526429	2R_17526429_SNP [dm3] 2R_21638924_SNP [dm6]	G	A	2.139e^-4	0.977	DOWNSTREAM CG10321 INTERGENIC
2L	10292467	2L_10292467_DEL [dm3] 2L_10292467_DEL [dm6]	ATA	A	2.140e^-4	0.977	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	15420401	2R_15420401_SNP [dm3] 2R_19532896_SNP [dm6]	C	T	2.142e^-4	0.977	INTRON sm
X	887585	X_887585_SNP [dm3] X_993552_SNP [dm6]	G	T	2.145e^-4	0.977	INTERGENIC
2R	10684567	2R_10684567_SNP [dm3] 2R_14797062_SNP [dm6]	T	C	2.152e^-4	0.977	UPSTREAM kn INTRON kn
2L	9128054	2L_9128054_SNP [dm3] 2L_9128054_SNP [dm6]	A	T	2.155e^-4	0.977	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12674806	X_12674806_INS [dm3] X_12780773_INS [dm6]	T	TAGCATTTTA	2.159e^-4	0.977	INTRON CG32647
2L	3921182	2L_3921182_SNP [dm3] 2L_3921182_SNP [dm6]	G	C	2.167e^-4	0.977	INTRON fred
2L	14472370	2L_14472370_DEL [dm3] 2L_14472370_DEL [dm6]	TT	T	2.170e^-4	0.977	INTERGENIC
3R	21602394	3R_21602394_SNP [dm3] 3R_25776672_SNP [dm6]	G	A	2.174e^-4	0.977	SYNONYMOUS_CODING CG17195 UPSTREAM CG17196 DOWNSTREAM CG4956
2R	14659414	2R_14659414_SNP [dm3] 2R_18771909_SNP [dm6]	A	T	2.177e^-4	0.977	INTRON Mctp
2R	5670266	2R_5670266_DEL [dm3] 2R_9782761_DEL [dm6]	GT	G	2.180e^-4	0.977	INTRON CG1688	TF binding site mE1_TFBS_inv
2L	15623187	2L_15623187_SNP [dm3] 2L_15623187_SNP [dm6]	G	C	2.185e^-4	0.977	SYNONYMOUS_CODING Or35a
X	10320685	X_10320685_SNP [dm3] X_10426652_SNP [dm6]	T	G	2.187e^-4	0.977	INTRON CG32683
2L	9063902	2L_9063902_SNP [dm3] 2L_9063902_SNP [dm6]	C	T	2.190e^-4	0.977	INTRON CG31708	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3317236	3L_3317236_SNP [dm3] 3L_3317236_SNP [dm6]	C	A	2.197e^-4	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
2R	5655046	2R_5655046_SNP [dm3] 2R_9767541_SNP [dm6]	A	G	2.221e^-4	0.977	DOWNSTREAM CR44205 INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	18966091	X_18966091_SNP [dm3] X_19072058_SNP [dm6]	C	T	2.225e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	2675423	3L_2675423_SNP [dm3] 3L_2675423_SNP [dm6]	C	T	2.236e^-4	0.977	INTRON Fife
3R	22489469	3R_22489469_SNP [dm3] 3R_26663747_SNP [dm6]	A	G	2.242e^-4	0.977	INTRON beat-VII
2L	16384921	2L_16384921_DEL [dm3] 2L_16384921_DEL [dm6]	TGA	G	2.245e^-4	0.977	INTERGENIC
2L	3688511	2L_3688511_SNP [dm3] 2L_3688511_SNP [dm6]	T	C	2.255e^-4	0.977	INTRON CG34340
2L	10687939	2L_10687939_SNP [dm3] 2L_10687939_SNP [dm6]	A	T	2.261e^-4	0.977	UPSTREAM CG7296 DOWNSTREAM CG7294 INTERGENIC
3R	25201021	3R_25201021_SNP [dm3] 3R_29375299_SNP [dm6]	T	G	2.268e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	4217196	3R_4217196_SNP [dm3] 3R_8391474_SNP [dm6]	G	T	2.270e^-4	0.977	INTRON CG45263
2L	6283683	2L_6283683_SNP [dm3] 2L_6283683_SNP [dm6]	A	G	2.275e^-4	0.977	INTRON Ddr
2L	14575450	2L_14575450_SNP [dm3] 2L_14575450_SNP [dm6]	A	T	2.285e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25201023	3R_25201023_SNP [dm3] 3R_29375301_SNP [dm6]	T	C	2.287e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	13069335	X_13069335_SNP [dm3] X_13175302_SNP [dm6]	C	T	2.307e^-4	0.977	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
X	12674698	X_12674698_INS [dm3] X_12780665_INS [dm6]	A	AATACA	2.308e^-4	0.977	INTRON CG32647
X	13996337	X_13996337_SNP [dm3] X_14102304_SNP [dm6]	C	G	2.310e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24679666	3R_24679666_SNP [dm3] 3R_28853944_SNP [dm6]	G	A	2.324e^-4	0.977	UTR_3_PRIME Inx3 DOWNSTREAM Inx3 INTRON spg
X	13996307	X_13996307_SNP [dm3] X_14102274_SNP [dm6]	A	C	2.324e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14047301	2L_14047301_SNP [dm3] 2L_14047301_SNP [dm6]	C	A	2.331e^-4	0.977	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	13260334	X_13260334_SNP [dm3] X_13366301_SNP [dm6]	G	A	2.333e^-4	0.977	UTR_3_PRIME Syt12	TF binding site mE1_TFBS_HSA
2R	5854514	2R_5854514_SNP [dm3] 2R_9967009_SNP [dm6]	T	G	2.334e^-4	0.977	UPSTREAM CG12133 INTERGENIC
2L	1124684	2L_1124684_SNP [dm3] 2L_1124684_SNP [dm6]	G	T	2.338e^-4	0.977	INTRON Pino	TF binding site mE1_TFBS_HSA
2L	7216201	2L_7216201_SNP [dm3] 2L_7216201_SNP [dm6]	C	T	2.347e^-4	0.977	INTRON CG13784
2R	10865842	2R_10865842_SNP [dm3] 2R_14978337_SNP [dm6]	C	T	2.353e^-4	0.977	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	10234255	2R_10234255_SNP [dm3] 2R_14346750_SNP [dm6]	G	A	2.353e^-4	0.977	INTRON Shroom	TF binding site BDTNP1_TFBS_twi
2R	6996053	2R_6996053_SNP [dm3] 2R_11108548_SNP [dm6]	A	C	2.360e^-4	0.977	INTRON luna
2R	11692916	2R_11692916_SNP [dm3] 2R_15805411_SNP [dm6]	T	C	2.366e^-4	0.977	INTRON tun & 1 other
2R	1212882	2R_1212882_SNP [dm3] 2R_5325377_SNP [dm6]	T	C	2.371e^-4	0.977	INTRON sxc
2R	4466581	2R_4466581_SNP [dm3] 2R_8579076_SNP [dm6]	T	G	2.371e^-4	0.977	UPSTREAM CG42326 INTRON CG42326
4	633848	4_633848_SNP [dm3] 4_613222_SNP [dm6]	T	C	2.375e^-4	0.977	INTRON Eph	transposable element FlyBase
3L	2680532	3L_2680532_SNP [dm3] 3L_2680532_SNP [dm6]	G	A	2.382e^-4	0.977	INTRON Fife
3L	4039086	3L_4039086_SNP [dm3] 3L_4039086_SNP [dm6]	A	G	2.383e^-4	0.977	SYNONYMOUS_CODING CG11593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12094607	2R_12094607_SNP [dm3] 2R_16207102_SNP [dm6]	C	A	2.385e^-4	0.977	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
2L	10280162	2L_10280162_SNP [dm3] 2L_10280162_SNP [dm6]	T	C	2.389e^-4	0.977	SYNONYMOUS_CODING CG34043
2L	17550815	2L_17550815_SNP [dm3] 2L_17550815_SNP [dm6]	G	A	2.397e^-4	0.977	INTERGENIC
2R	13952220	2R_13952220_SNP [dm3] 2R_18064715_SNP [dm6]	G	A	2.401e^-4	0.977	INTRON CG34386
2L	7968284	2L_7968284_SNP [dm3] 2L_7968284_SNP [dm6]	A	T	2.405e^-4	0.977	INTRON Snoo
3R	14624304	3R_14624304_SNP [dm3] 3R_18798582_SNP [dm6]	C	A	2.411e^-4	0.977	DOWNSTREAM CG18208 INTERGENIC
2L	2853125	2L_2853125_SNP [dm3] 2L_2853125_SNP [dm6]	G	A	2.414e^-4	0.977	INTRON CG3104
3L	19445639	3L_19445639_SNP [dm3] 3L_19452539_SNP [dm6]	G	A	2.414e^-4	0.977	INTERGENIC
3L	3317157	3L_3317157_DEL [dm3] 3L_3317157_DEL [dm6]	CGT	C	2.415e^-4	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
2L	7670346	2L_7670346_SNP [dm3] 2L_7670346_SNP [dm6]	T	A	2.417e^-4	0.977	INTRON Slob & 1 other
3L	1515122	3L_1515122_SNP [dm3] 3L_1515122_SNP [dm6]	G	C	2.438e^-4	0.977	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
X	21910065	X_21910065_SNP [dm3] X_22508229_SNP [dm6]	T	A	2.445e^-4	0.977	DOWNSTREAM l_1_G0196 INTERGENIC
2L	7007071	2L_7007071_SNP [dm3] 2L_7007071_SNP [dm6]	A	T	2.445e^-4	0.977	INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15212074	2R_15212074_INS [dm3] 2R_19324569_INS [dm6]	T	TT	2.467e^-4	0.977	INTRON Rgk1
3L	2680626	3L_2680626_SNP [dm3] 3L_2680626_SNP [dm6]	T	A	2.469e^-4	0.977	INTRON Fife
3R	17691053	3R_17691053_SNP [dm3] 3R_21865331_SNP [dm6]	G	A	2.469e^-4	0.977	SYNONYMOUS_CODING lsn DOWNSTREAM CG6569	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7252673	2L_7252673_SNP [dm3] 2L_7252673_SNP [dm6]	A	G	2.475e^-4	0.977	INTRON CG13786
X	9215895	X_9215895_SNP [dm3] X_9321862_SNP [dm6]	G	A	2.476e^-4	0.977	NON_SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22070529	2L_22070529_INS [dm3] 2L_22070529_INS [dm6]	A	ATGCGAA	2.480e^-4	0.977	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase
2R	12623144	2R_12623144_SNP [dm3] 2R_16735639_SNP [dm6]	G	T	2.487e^-4	0.977	INTERGENIC
3L	20056294	3L_20056294_SNP [dm3] 3L_20063194_SNP [dm6]	T	A	2.509e^-4	0.977	INTRON sNPF-R
3L	6388014	3L_6388014_SNP [dm3] 3L_6394914_SNP [dm6]	A	C	2.513e^-4	0.977	INTERGENIC
2L	9148702	2L_9148702_SNP [dm3] 2L_9148702_SNP [dm6]	T	C	2.517e^-4	0.977	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18719226	X_18719226_SNP [dm3] X_18825193_SNP [dm6]	C	A	2.520e^-4	0.977	INTRON CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10064638	3L_10064638_SNP [dm3] 3L_10071538_SNP [dm6]	T	A	2.522e^-4	0.977	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5862019	2R_5862019_SNP [dm3] 2R_9974514_SNP [dm6]	C	A	2.524e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24041355	3R_24041355_SNP [dm3] 3R_28215633_SNP [dm6]	T	C	2.529e^-4	0.977	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	24538093	3R_24538093_SNP [dm3] 3R_28712371_SNP [dm6]	T	C	2.530e^-4	0.977	INTRON htt
X	11547251	X_11547251_DEL [dm3] X_11653218_DEL [dm6]	ATCTCTGGTGA...	A	2.531e^-4	0.977	INTRON Ptp10D
2L	1088169	2L_1088169_SNP [dm3] 2L_1088169_SNP [dm6]	T	C	2.542e^-4	0.977	INTRON CG4629
2L	8999766	2L_8999766_INS [dm3] 2L_8999766_INS [dm6]	A	AGA	2.546e^-4	0.977	UTR_3_PRIME Try29F DOWNSTREAM Try29F
3R	8985787	3R_8985787_SNP [dm3] 3R_13160065_SNP [dm6]	T	G	2.555e^-4	0.977	INTRON timeout
X	5512524	X_5512524_SNP [dm3] X_5618491_SNP [dm6]	G	A	2.563e^-4	0.977	DOWNSTREAM Mlc-c INTRON RhoGAP5A	TF binding site mE1_TFBS_chinmo
X	21091362	X_21091362_SNP [dm3] X_21220335_SNP [dm6]	C	T	2.586e^-4	0.977	INTRON CG32521
X	3894992	X_3894992_SNP [dm3] X_4000959_SNP [dm6]	G	A	2.604e^-4	0.977	DOWNSTREAM CR43298 INTERGENIC
2R	12489675	2R_12489675_SNP [dm3] 2R_16602170_SNP [dm6]	T	C	2.620e^-4	0.977	INTRON CG8303
3L	1552047	3L_1552047_SNP [dm3] 3L_1552047_SNP [dm6]	C	T	2.632e^-4	0.977	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7623555	2R_7623555_SNP [dm3] 2R_11736050_SNP [dm6]	A	G	2.632e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21454844	3R_21454844_SNP [dm3] 3R_25629122_SNP [dm6]	C	T	2.638e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2757926	3L_2757926_SNP [dm3] 3L_2757926_SNP [dm6]	C	T	2.668e^-4	0.977	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3L	3224558	3L_3224558_SNP [dm3] 3L_3224558_SNP [dm6]	A	T	2.673e^-4	0.977	UTR_3_PRIME CG17737 UPSTREAM CG11505	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1120034	3L_1120034_SNP [dm3] 3L_1120034_SNP [dm6]	C	T	2.693e^-4	0.977	INTERGENIC
3L	2675167	3L_2675167_SNP [dm3] 3L_2675167_SNP [dm6]	G	T	2.699e^-4	0.977	INTRON Fife
2R	6995991	2R_6995991_SNP [dm3] 2R_11108486_SNP [dm6]	A	T	2.714e^-4	0.977	INTRON luna
3L	4344013	3L_4344013_SNP [dm3] 3L_4344013_SNP [dm6]	T	C	2.737e^-4	0.977	INTRON Cip4
2L	7252692	2L_7252692_SNP [dm3] 2L_7252692_SNP [dm6]	A	T	2.745e^-4	0.977	NON_SYNONYMOUS_CODING CG13786 SPLICE_SITE_REGION CG13786
3L	12857858	3L_12857858_SNP [dm3] 3L_12864758_SNP [dm6]	A	T	2.749e^-4	0.977	INTERGENIC
2L	17679065	2L_17679065_SNP [dm3] 2L_17679065_SNP [dm6]	T	C	2.754e^-4	0.977	INTRON CadN
3R	20424975	3R_20424975_DEL [dm3] 3R_24599253_DEL [dm6]	TATAG	C	2.756e^-4	0.977	INTRON mld	TF binding site mE1_TFBS_HSA
X	3817992	X_3817992_SNP [dm3] X_3923959_SNP [dm6]	C	T	2.783e^-4	0.977	INTRON CG42541
3L	11650346	3L_11650346_SNP [dm3] 3L_11657246_SNP [dm6]	A	T	2.786e^-4	0.977	DOWNSTREAM mir-274 INTRON CG32085
3R	16571460	3R_16571460_SNP [dm3] 3R_20745738_SNP [dm6]	A	G	2.800e^-4	0.977	UPSTREAM CG31200 INTRON CG42322
2R	8526558	2R_8526558_SNP [dm3] 2R_12639053_SNP [dm6]	G	A	2.834e^-4	0.977	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15264367	3L_15264367_SNP [dm3] 3L_15271267_SNP [dm6]	G	A	2.837e^-4	0.977	INTERGENIC
2L	14492546	2L_14492546_SNP [dm3] 2L_14492546_SNP [dm6]	G	A	2.840e^-4	0.977	SYNONYMOUS_CODING noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16384951	2L_16384951_SNP [dm3] 2L_16384951_SNP [dm6]	C	A	2.857e^-4	0.977	INTERGENIC
2R	8617545	2R_8617545_SNP [dm3] 2R_12730040_SNP [dm6]	G	A	2.859e^-4	0.977	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2L	3758960	2L_3758960_SNP [dm3] 2L_3758960_SNP [dm6]	G	T	2.861e^-4	0.977	INTRON CG43707
3R	22714572	3R_22714572_DEL [dm3] 3R_26888850_DEL [dm6]	ATGTA	A	2.862e^-4	0.977	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15288191	2L_15288191_SNP [dm3] 2L_15288191_SNP [dm6]	G	T	2.869e^-4	0.977	INTERGENIC
3R	25971274	3R_25971274_SNP [dm3] 3R_30145552_SNP [dm6]	C	A	2.893e^-4	0.977	INTRON AdoR
3R	26994782	3R_26994782_SNP [dm3] 3R_31169060_SNP [dm6]	T	A	2.895e^-4	0.977	UTR_5_PRIME stops UPSTREAM stops INTRON Gycbeta100B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3260819	3L_3260819_SNP [dm3] 3L_3260819_SNP [dm6]	G	A	2.901e^-4	0.977	INTRON ckd
2R	13719460	2R_13719460_SNP [dm3] 2R_17831955_SNP [dm6]	T	G	2.906e^-4	0.977	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7588909	3L_7588909_SNP [dm3] 3L_7595809_SNP [dm6]	T	C	2.906e^-4	0.977	INTRON CG33275
3L	8688132	3L_8688132_SNP [dm3] 3L_8695032_SNP [dm6]	T	C	2.906e^-4	0.977	INTERGENIC
3R	25158115	3R_25158115_SNP [dm3] 3R_29332393_SNP [dm6]	A	T	2.911e^-4	0.977	INTERGENIC
2L	16479743	2L_16479743_SNP [dm3] 2L_16479743_SNP [dm6]	C	A	2.912e^-4	0.977	INTRON dac
X	13260164	X_13260164_SNP [dm3] X_13366131_SNP [dm6]	A	G	2.916e^-4	0.977	UTR_3_PRIME Syt12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16254559	3R_16254559_SNP [dm3] 3R_20428837_SNP [dm6]	G	A	2.920e^-4	0.977	INTRON Gfrl
2R	20381152	2R_20381152_SNP [dm3] 2R_24493629_SNP [dm6]	C	T	2.923e^-4	0.977	SYNONYMOUS_CODING CG13590 UPSTREAM CG13589 & 1 other
3L	2116593	3L_2116593_SNP [dm3] 3L_2116593_SNP [dm6]	C	A	2.923e^-4	0.977	UPSTREAM sls DOWNSTREAM zormin INTERGENIC
2R	6918847	2R_6918847_SNP [dm3] 2R_11031342_SNP [dm6]	A	C	2.929e^-4	0.977	INTRON luna
3R	26071623	3R_26071623_SNP [dm3] 3R_30245901_SNP [dm6]	C	T	2.932e^-4	0.977	SYNONYMOUS_CODING CG9733
3L	4140232	3L_4140232_SNP [dm3] 3L_4140232_SNP [dm6]	T	C	2.947e^-4	0.977	SYNONYMOUS_CODING Ras64B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11678681	2L_11678681_SNP [dm3] 2L_11678681_SNP [dm6]	T	A	2.947e^-4	0.977	INTERGENIC
2L	6423394	2L_6423394_SNP [dm3] 2L_6423394_SNP [dm6]	A	G	2.957e^-4	0.977	UPSTREAM Tig & 1 other INTERGENIC
2L	16161985	2L_16161985_INS [dm3] 2L_16161985_INS [dm6]	G	GAG	2.972e^-4	0.977	INTERGENIC
3R	15949843	3R_15949843_SNP [dm3] 3R_20124121_SNP [dm6]	C	A	2.981e^-4	0.977	INTERGENIC
2R	6437576	2R_6437576_SNP [dm3] 2R_10550071_SNP [dm6]	T	A	2.981e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3L	3679635	3L_3679635_DEL [dm3] 3L_3679635_DEL [dm6]	CGCCGTGGGTCGAAA...	C	2.983e^-4	0.977	INTERGENIC
3R	8357432	3R_8357432_INS [dm3] 3R_12531710_INS [dm6]	C	CCACTCGCGCC...	2.989e^-4	0.977	INTRON Octbeta3R
3R	19133663	3R_19133663_SNP [dm3] 3R_23307941_SNP [dm6]	A	G	2.993e^-4	0.977	INTRON pnt	TF binding site mE1_TFBS_inv
2L	18169658	2L_18169658_SNP [dm3] 2L_18169658_SNP [dm6]	T	A	3.014e^-4	0.977	INTRON CG42750
3R	15949859	3R_15949859_SNP [dm3] 3R_20124137_SNP [dm6]	T	A	3.020e^-4	0.977	INTERGENIC
2R	1211720	2R_1211720_SNP [dm3] 2R_5324215_SNP [dm6]	C	T	3.023e^-4	0.977	INTRON sxc
3L	3317122	3L_3317122_SNP [dm3] 3L_3317122_SNP [dm6]	T	C	3.027e^-4	0.977	UTR_3_PRIME Drsl5 DOWNSTREAM PIG-C
3L	16903595	3L_16903595_DEL [dm3] 3L_16910495_DEL [dm6]	CGCAC	C	3.029e^-4	0.977	UPSTREAM Lmpt INTRON Lmpt
2R	6889454	2R_6889454_SNP [dm3] 2R_11001949_SNP [dm6]	T	C	3.030e^-4	0.977	INTRON luna
2L	11932213	2L_11932213_SNP [dm3] 2L_11932213_SNP [dm6]	C	A	3.036e^-4	0.977	INTERGENIC
X	10109000	X_10109000_SNP [dm3] X_10214967_SNP [dm6]	G	A	3.054e^-4	0.977	UTR_3_PRIME l_1_G0230 & 1 other DOWNSTREAM l_1_G0230	TF binding site mE1_TFBS_chinmo
3L	2253406	3L_2253406_SNP [dm3] 3L_2253406_SNP [dm6]	G	T	3.066e^-4	0.977	SYNONYMOUS_CODING CG1275 DOWNSTREAM CG32305	TF binding site mE1_TFBS_cad
3L	12469669	3L_12469669_SNP [dm3] 3L_12476569_SNP [dm6]	A	G	3.067e^-4	0.977	SYNONYMOUS_CODING CG10663
2L	1970995	2L_1970995_SNP [dm3] 2L_1970995_SNP [dm6]	C	T	3.070e^-4	0.977	UPSTREAM erm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24659104	3R_24659104_SNP [dm3] 3R_28833382_SNP [dm6]	G	A	3.083e^-4	0.977	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2R	19340123	2R_19340123_SNP [dm3] 2R_23452600_SNP [dm6]	A	G	3.088e^-4	0.977	INTRON CG43795
X	11321437	X_11321437_SNP [dm3] X_11427404_SNP [dm6]	T	C	3.090e^-4	0.977	INTRON Gs2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20381173	2R_20381173_SNP [dm3] 2R_24493650_SNP [dm6]	G	T	3.094e^-4	0.977	SYNONYMOUS_CODING CG13590 UPSTREAM CG13589 & 1 other
2R	3915823	2R_3915823_SNP [dm3] 2R_8028318_SNP [dm6]	C	A	3.094e^-4	0.977	DOWNSTREAM CR43724 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20091620	2L_20091620_SNP [dm3] 2L_20091620_SNP [dm6]	C	T	3.107e^-4	0.977	UTR_5_PRIME CG10721 UPSTREAM CG10747 INTRON CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
X	12086349	X_12086349_SNP [dm3] X_12192316_SNP [dm6]	A	G	3.123e^-4	0.977	INTRON Ten-a
X	20342578	X_20342578_SNP [dm3] X_20471551_SNP [dm6]	G	A	3.125e^-4	0.977	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2L	14959572	2L_14959572_SNP [dm3] 2L_14959572_SNP [dm6]	A	C	3.129e^-4	0.977	INTRON CG42313
X	2291412	X_2291412_SNP [dm3] X_2397379_SNP [dm6]	A	T	3.138e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2680681	3L_2680681_SNP [dm3] 3L_2680681_SNP [dm6]	C	G	3.146e^-4	0.977	INTRON Fife
2L	13271050	2L_13271050_SNP [dm3] 2L_13271050_SNP [dm6]	T	A	3.155e^-4	0.977	INTRON CG44085
2R	10425353	2R_10425353_SNP [dm3] 2R_14537848_SNP [dm6]	A	C	3.159e^-4	0.977	INTRON ttv
3R	14172445	3R_14172445_SNP [dm3] 3R_18346723_SNP [dm6]	A	C	3.166e^-4	0.977	INTRON CG15803	transposable element FlyBase
3R	26537206	3R_26537206_SNP [dm3] 3R_30711484_SNP [dm6]	T	C	3.173e^-4	0.977	INTERGENIC
2L	7720042	2L_7720042_SNP [dm3] 2L_7720042_SNP [dm6]	A	T	3.175e^-4	0.977	NON_SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
X	13996334	X_13996334_SNP [dm3] X_14102301_SNP [dm6]	C	A	3.178e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13202292	2R_13202292_SNP [dm3] 2R_17314787_SNP [dm6]	G	A	3.182e^-4	0.977	INTRON mbl
3R	8357444	3R_8357444_SNP [dm3] 3R_12531722_SNP [dm6]	A	C	3.190e^-4	0.977	INTRON Octbeta3R
2R	6002200	2R_6002200_SNP [dm3] 2R_10114695_SNP [dm6]	C	G	3.194e^-4	0.977	INTRON Pfk
3L	10034526	3L_10034526_INS [dm3] 3L_10041426_INS [dm6]	T	TGAAG	3.202e^-4	0.977	DOWNSTREAM dpr6 INTRON dpr6
X	14791249	X_14791249_INS [dm3] X_14897216_INS [dm6]	A	ATTATATATA	3.204e^-4	0.977	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15951843	3R_15951843_SNP [dm3] 3R_20126121_SNP [dm6]	T	G	3.207e^-4	0.977	INTERGENIC
3R	12315575	3R_12315575_SNP [dm3] 3R_16489853_SNP [dm6]	A	G	3.215e^-4	0.977	NON_SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10044955	3R_10044955_SNP [dm3] 3R_14219233_SNP [dm6]	C	A	3.220e^-4	0.977	NON_SYNONYMOUS_CODING CG31326
2L	20091769	2L_20091769_SNP [dm3] 2L_20091769_SNP [dm6]	A	G	3.237e^-4	0.977	NON_SYNONYMOUS_CODING CG10721 UPSTREAM CG10747	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13772613	3L_13772613_SNP [dm3] 3L_13779513_SNP [dm6]	A	G	3.238e^-4	0.977	INTRON bru-3
3L	4141526	3L_4141526_SNP [dm3] 3L_4141526_SNP [dm6]	C	T	3.240e^-4	0.977	UTR_5_PRIME Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
2L	13271026	2L_13271026_SNP [dm3] 2L_13271026_SNP [dm6]	T	G	3.244e^-4	0.977	INTRON CG44085
2L	13271027	2L_13271027_SNP [dm3] 2L_13271027_SNP [dm6]	G	A	3.244e^-4	0.977	INTRON CG44085
3L	10395825	3L_10395825_SNP [dm3] 3L_10402725_SNP [dm6]	T	C	3.245e^-4	0.977	INTERGENIC
2R	11934888	2R_11934888_SNP [dm3] 2R_16047383_SNP [dm6]	G	C	3.247e^-4	0.977	UPSTREAM CG8405 DOWNSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	2545252	2L_2545252_SNP [dm3] 2L_2545252_SNP [dm6]	T	A	3.253e^-4	0.977	INTERGENIC
3R	3653456	3R_3653456_SNP [dm3] 3R_7827734_SNP [dm6]	G	T	3.254e^-4	0.977	INTRON CG34384
3R	16594415	3R_16594415_SNP [dm3] 3R_20768693_SNP [dm6]	G	A	3.278e^-4	0.977	INTRON Syp
X	2339673	X_2339673_SNP [dm3] X_2445640_SNP [dm6]	G	A	3.281e^-4	0.977	INTRON boi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19222746	X_19222746_SNP [dm3] X_19328713_SNP [dm6]	G	A	3.286e^-4	0.977	UTR_3_PRIME nAChRalpha7
2L	13271065	2L_13271065_SNP [dm3] 2L_13271065_SNP [dm6]	C	G	3.308e^-4	0.977	INTRON CG44085
2L	13806436	2L_13806436_DEL [dm3] 2L_13806436_DEL [dm6]	CC	C	3.316e^-4	0.977	INTRON CAH1
2R	4467106	2R_4467106_SNP [dm3] 2R_8579601_SNP [dm6]	A	T	3.342e^-4	0.977	INTRON CG42326
2L	12394096	2L_12394096_SNP [dm3] 2L_12394096_SNP [dm6]	T	G	3.345e^-4	0.977	INTRON bru-2
3L	15224974	3L_15224974_SNP [dm3] 3L_15231874_SNP [dm6]	G	A	3.348e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20321053	2L_20321053_SNP [dm3] 2L_20321053_SNP [dm6]	C	A	3.354e^-4	0.977	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14575392	2L_14575392_SNP [dm3] 2L_14575392_SNP [dm6]	G	A	3.357e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6087356	2L_6087356_SNP [dm3] 2L_6087356_SNP [dm6]	C	T	3.364e^-4	0.977	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl
3L	8392253	3L_8392253_SNP [dm3] 3L_8399153_SNP [dm6]	T	A	3.366e^-4	0.977	INTRON CG7120
2R	17786276	2R_17786276_SNP [dm3] 2R_21898771_SNP [dm6]	G	A	3.370e^-4	0.977	INTRON Fili
2L	19899848	2L_19899848_SNP [dm3] 2L_19899848_SNP [dm6]	A	G	3.387e^-4	0.977	INTRON sick	TF binding site mE1_TFBS_HSA
2L	8875700	2L_8875700_SNP [dm3] 2L_8875700_SNP [dm6]	A	T	3.395e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12576818	2R_12576818_SNP [dm3] 2R_16689313_SNP [dm6]	A	T	3.396e^-4	0.977	INTRON CG30463
3L	10064649	3L_10064649_SNP [dm3] 3L_10071549_SNP [dm6]	T	G	3.397e^-4	0.977	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25379895	3R_25379895_SNP [dm3] 3R_29554173_SNP [dm6]	G	A	3.398e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	2820177	2L_2820177_SNP [dm3] 2L_2820177_SNP [dm6]	C	A	3.406e^-4	0.977	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25840709	3R_25840709_SNP [dm3] 3R_30014987_SNP [dm6]	T	C	3.409e^-4	0.977	SYNONYMOUS_CODING CG7920 DOWNSTREAM Mgat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7929290	3L_7929290_SNP [dm3] 3L_7936190_SNP [dm6]	C	T	3.416e^-4	0.977	UPSTREAM Srp9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3688475	2L_3688475_SNP [dm3] 2L_3688475_SNP [dm6]	A	G	3.416e^-4	0.977	INTRON CG34340
2L	7377807	2L_7377807_SNP [dm3] 2L_7377807_SNP [dm6]	A	C	3.420e^-4	0.977	UTR_5_PRIME ninaC DOWNSTREAM Wnt10
2L	14069438	2L_14069438_SNP [dm3] 2L_14069438_SNP [dm6]	G	T	3.422e^-4	0.977	INTRON nAChRalpha5
X	16652698	X_16652698_SNP [dm3] X_16758665_SNP [dm6]	G	T	3.422e^-4	0.977	INTRON if
2L	12139497	2L_12139497_SNP [dm3] 2L_12139497_SNP [dm6]	T	G	3.426e^-4	0.977	INTRON Gr33a
3L	2690491	3L_2690491_SNP [dm3] 3L_2690491_SNP [dm6]	T	C	3.428e^-4	0.977	INTRON Fife
3L	3317104	3L_3317104_INS [dm3] 3L_3317104_INS [dm6]	T	TAAGATCGGT	3.441e^-4	0.977	UTR_3_PRIME Drsl5 DOWNSTREAM PIG-C
2R	14116338	2R_14116338_SNP [dm3] 2R_18228833_SNP [dm6]	C	T	3.441e^-4	0.977	DOWNSTREAM CR45310 EXON CR45311
3R	25198685	3R_25198685_INS [dm3] 3R_29372963_INS [dm6]	A	AA	3.446e^-4	0.977	INTERGENIC
2L	14355321	2L_14355321_SNP [dm3] 2L_14355321_SNP [dm6]	T	C	3.454e^-4	0.977	UTR_5_PRIME Rab14 UPSTREAM l_2_34Fd DOWNSTREAM CR44851	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13719467	2R_13719467_SNP [dm3] 2R_17831962_SNP [dm6]	G	A	3.461e^-4	0.977	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12674564	X_12674564_SNP [dm3] X_12780531_SNP [dm6]	C	T	3.492e^-4	0.977	INTRON CG32647
3R	21584613	3R_21584613_SNP [dm3] 3R_25758891_SNP [dm6]	T	C	3.498e^-4	0.977	NON_SYNONYMOUS_CODING LpR1 INTRON LpR1
2L	5766262	2L_5766262_SNP [dm3] 2L_5766262_SNP [dm6]	C	G	3.513e^-4	0.977	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
X	8576765	X_8576765_SNP [dm3] X_8682732_SNP [dm6]	T	A	3.515e^-4	0.977	INTRON CG11284	TF binding site BDTNP1_TFBS_twi
3L	7929383	3L_7929383_SNP [dm3] 3L_7936283_SNP [dm6]	G	A	3.516e^-4	0.977	UPSTREAM Srp9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9089593	2L_9089593_SNP [dm3] 2L_9089593_SNP [dm6]	C	T	3.523e^-4	0.977	DOWNSTREAM Toll-4 INTERGENIC
2L	3561714	2L_3561714_SNP [dm3] 2L_3561714_SNP [dm6]	C	T	3.523e^-4	0.977	UPSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20713042	3R_20713042_SNP [dm3] 3R_24887320_SNP [dm6]	C	A	3.528e^-4	0.977	INTRON CG31121	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10464877	3L_10464877_SNP [dm3] 3L_10471777_SNP [dm6]	G	T	3.535e^-4	0.977	INTERGENIC
X	9730614	X_9730614_SNP [dm3] X_9836581_SNP [dm6]	T	A	3.536e^-4	0.977	INTRON CG32698
X	9730636	X_9730636_SNP [dm3] X_9836603_SNP [dm6]	T	C	3.536e^-4	0.977	SYNONYMOUS_CODING CG32698
X	14706075	X_14706075_SNP [dm3] X_14812042_SNP [dm6]	T	C	3.548e^-4	0.977	INTRON rut
3L	21255039	3L_21255039_SNP [dm3] 3L_21261939_SNP [dm6]	A	G	3.550e^-4	0.977	INTRON Eip78C
2L	3141307	2L_3141307_SNP [dm3] 2L_3141307_SNP [dm6]	G	A	3.553e^-4	0.977	INTRON toc
2L	11881883	2L_11881883_SNP [dm3] 2L_11881883_SNP [dm6]	C	T	3.567e^-4	0.977	INTRON Pde1c
2R	6002245	2R_6002245_SNP [dm3] 2R_10114740_SNP [dm6]	G	A	3.572e^-4	0.977	INTRON Pfk
2L	9096060	2L_9096060_SNP [dm3] 2L_9096060_SNP [dm6]	C	A	3.579e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9280962	2R_9280962_SNP [dm3] 2R_13393457_SNP [dm6]	A	T	3.581e^-4	0.977	UPSTREAM AttC & 1 other INTERGENIC
3R	10283598	3R_10283598_SNP [dm3] 3R_14457876_SNP [dm6]	T	A	3.582e^-4	0.977	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	18720201	X_18720201_SNP [dm3] X_18826168_SNP [dm6]	C	A	3.592e^-4	0.977	SYNONYMOUS_CODING CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7288367	2R_7288367_SNP [dm3] 2R_11400862_SNP [dm6]	A	C	3.592e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	13074513	2L_13074513_SNP [dm3] 2L_13074513_SNP [dm6]	C	T	3.600e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14222267	2L_14222267_SNP [dm3] 2L_14222267_SNP [dm6]	T	C	3.601e^-4	0.977	INTRON Dyrk2
X	15323372	X_15323372_SNP [dm3] X_15429339_SNP [dm6]	A	G	3.609e^-4	0.977	INTRON Cngl
2R	7517120	2R_7517120_SNP [dm3] 2R_11629615_SNP [dm6]	T	C	3.617e^-4	0.977	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17943983	2R_17943983_SNP [dm3] 2R_22056478_SNP [dm6]	C	G	3.634e^-4	0.977	NON_SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
3R	19415228	3R_19415228_SNP [dm3] 3R_23589506_SNP [dm6]	G	T	3.638e^-4	0.977	DOWNSTREAM CG33337 INTRON CG10182
3L	16090472	3L_16090472_SNP [dm3] 3L_16097372_SNP [dm6]	G	T	3.638e^-4	0.977	NON_SYNONYMOUS_CODING CG13074 UPSTREAM ms_3_72Dt	TF binding site mE1_TFBS_cad
3L	603970	3L_603970_SNP [dm3] 3L_603970_SNP [dm6]	G	C	3.638e^-4	0.977	START_GAINED CG13893 UTR_5_PRIME CG13893	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2690448	3L_2690448_SNP [dm3] 3L_2690448_SNP [dm6]	T	G	3.640e^-4	0.977	INTRON Fife
3R	15290697	3R_15290697_SNP [dm3] 3R_19464975_SNP [dm6]	A	T	3.644e^-4	0.977	INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6995719	2R_6995719_SNP [dm3] 2R_11108214_SNP [dm6]	G	T	3.645e^-4	0.977	INTRON luna	TF binding site mE1_TFBS_Trl
2L	19562352	2L_19562352_SNP [dm3] 2L_19562352_SNP [dm6]	C	T	3.649e^-4	0.977	SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_sens
2R	7517121	2R_7517121_SNP [dm3] 2R_11629616_SNP [dm6]	G	C	3.661e^-4	0.977	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26086194	3R_26086194_DEL [dm3] 3R_30260472_DEL [dm6]	TC	T	3.662e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1971933	2L_1971933_SNP [dm3] 2L_1971933_SNP [dm6]	G	T	3.665e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13204674	2R_13204674_SNP [dm3] 2R_17317169_SNP [dm6]	A	T	3.669e^-4	0.977	INTRON mbl
2L	4791214	2L_4791214_SNP [dm3] 2L_4791214_SNP [dm6]	C	T	3.673e^-4	0.977	INTRON CG15630
2R	6996000	2R_6996000_SNP [dm3] 2R_11108495_SNP [dm6]	C	T	3.676e^-4	0.977	INTRON luna
3L	9173775	3L_9173775_SNP [dm3] 3L_9180675_SNP [dm6]	C	A	3.679e^-4	0.977	INTRON Rdl
2L	12982363	2L_12982363_SNP [dm3] 2L_12982363_SNP [dm6]	A	T	3.685e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12489868	2R_12489868_SNP [dm3] 2R_16602363_SNP [dm6]	T	C	3.693e^-4	0.977	INTRON CG8303
3L	3317124	3L_3317124_DEL [dm3] 3L_3317124_DEL [dm6]	TTAAATAT	T	3.696e^-4	0.977	UTR_3_PRIME Drsl5 DOWNSTREAM PIG-C
2L	20389944	2L_20389944_SNP [dm3] 2L_20389944_SNP [dm6]	A	T	3.697e^-4	0.977	INTRON CG10947	TF binding site mE1_TFBS_inv
3R	15949878	3R_15949878_SNP [dm3] 3R_20124156_SNP [dm6]	G	A	3.704e^-4	0.977	INTERGENIC
2R	5654670	2R_5654670_SNP [dm3] 2R_9767165_SNP [dm6]	C	T	3.706e^-4	0.977	SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6995976	2R_6995976_SNP [dm3] 2R_11108471_SNP [dm6]	T	C	3.709e^-4	0.977	INTRON luna
3R	10278109	3R_10278109_SNP [dm3] 3R_14452387_SNP [dm6]	G	A	3.717e^-4	0.977	INTRON cv-c	TF binding site mE1_TFBS_inv
3L	4245855	3L_4245855_SNP [dm3] 3L_4245855_SNP [dm6]	C	G	3.727e^-4	0.977	UTR_3_PRIME pav DOWNSTREAM ago
3R	4908626	3R_4908626_SNP [dm3] 3R_9082904_SNP [dm6]	C	T	3.730e^-4	0.977	INTRON pum
2L	6421061	2L_6421061_SNP [dm3] 2L_6421061_SNP [dm6]	C	G	3.735e^-4	0.977	NON_SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2736789	3L_2736789_SNP [dm3] 3L_2736789_SNP [dm6]	A	G	3.742e^-4	0.977	INTRON Mrtf
3R	18265003	3R_18265003_SNP [dm3] 3R_22439281_SNP [dm6]	C	T	3.744e^-4	0.977	DOWNSTREAM CG12499 INTERGENIC
2R	5854517	2R_5854517_SNP [dm3] 2R_9967012_SNP [dm6]	A	G	3.745e^-4	0.977	UPSTREAM CG12133 INTERGENIC
2R	5854573	2R_5854573_SNP [dm3] 2R_9967068_SNP [dm6]	G	C	3.745e^-4	0.977	UPSTREAM CG12133 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5854827	2R_5854827_SNP [dm3] 2R_9967322_SNP [dm6]	A	G	3.745e^-4	0.977	NON_SYNONYMOUS_CODING CG12133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5662242	2R_5662242_SNP [dm3] 2R_9774737_SNP [dm6]	C	A	3.769e^-4	0.977	UPSTREAM CR44207 INTRON CG1688	TF binding site mE1_TFBS_HSA
2R	14116088	2R_14116088_SNP [dm3] 2R_18228583_SNP [dm6]	C	T	3.771e^-4	0.977	EXON CR45310 & 1 other
3L	11374652	3L_11374652_SNP [dm3] 3L_11381552_SNP [dm6]	G	A	3.778e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	22046826	2L_22046826_DEL [dm3] 2L_22046826_DEL [dm6]	TT	T	3.780e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12576702	2R_12576702_DEL [dm3] 2R_16689197_DEL [dm6]	TGTGCTGGTTTTTGCCCTCT...	T	3.795e^-4	0.977	INTRON CG30463
2L	9964209	2L_9964209_SNP [dm3] 2L_9964209_SNP [dm6]	G	T	3.812e^-4	0.977	UTR_3_PRIME Dref UPSTREAM CG5850 DOWNSTREAM Dref
2L	6267386	2L_6267386_SNP [dm3] 2L_6267386_SNP [dm6]	G	A	3.815e^-4	0.977	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10283751	3R_10283751_SNP [dm3] 3R_14458029_SNP [dm6]	A	T	3.823e^-4	0.977	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13260152	X_13260152_SNP [dm3] X_13366119_SNP [dm6]	G	A	3.826e^-4	0.977	UTR_3_PRIME Syt12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9171168	2L_9171168_SNP [dm3] 2L_9171168_SNP [dm6]	C	G	3.827e^-4	0.977	INTRON tai
2R	18791730	2R_18791730_SNP [dm3] 2R_22904207_SNP [dm6]	G	C	3.828e^-4	0.977	UTR_5_PRIME nahoda
3L	10422655	3L_10422655_SNP [dm3] 3L_10429555_SNP [dm6]	C	A	3.830e^-4	0.977	DOWNSTREAM Ir67b INTERGENIC
2L	14580179	2L_14580179_SNP [dm3] 2L_14580179_SNP [dm6]	A	G	3.832e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1089384	2L_1089384_SNP [dm3] 2L_1089384_SNP [dm6]	A	T	3.833e^-4	0.977	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15919793	3R_15919793_SNP [dm3] 3R_20094071_SNP [dm6]	A	C	3.836e^-4	0.977	INTERGENIC
2R	12265227	2R_12265227_SNP [dm3] 2R_16377722_SNP [dm6]	G	T	3.843e^-4	0.977	INTERGENIC
3R	14172298	3R_14172298_DEL [dm3] 3R_18346576_DEL [dm6]	TGCCCTTTAAT...	T	3.846e^-4	0.977	INTRON CG15803
3L	19445524	3L_19445524_SNP [dm3] 3L_19452424_SNP [dm6]	G	T	3.852e^-4	0.977	INTERGENIC
3R	22980046	3R_22980046_SNP [dm3] 3R_27154324_SNP [dm6]	G	A	3.855e^-4	0.977	SYNONYMOUS_CODING Men-b
2L	14571510	2L_14571510_SNP [dm3] 2L_14571510_SNP [dm6]	C	T	3.859e^-4	0.977	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1270940	3L_1270940_SNP [dm3] 3L_1270940_SNP [dm6]	T	C	3.861e^-4	0.977	INTRON CG9134
2L	6424512	2L_6424512_SNP [dm3] 2L_6424512_SNP [dm6]	C	A	3.865e^-4	0.977	UTR_5_PRIME Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	6995715	2R_6995715_SNP [dm3] 2R_11108210_SNP [dm6]	G	C	3.870e^-4	0.977	INTRON luna	TF binding site mE1_TFBS_Trl
3R	16594416	3R_16594416_SNP [dm3] 3R_20768694_SNP [dm6]	G	A	3.883e^-4	0.977	INTRON Syp
2L	20356564	2L_20356564_SNP [dm3] 2L_20356564_SNP [dm6]	C	A	3.902e^-4	0.977	SPLICE_SITE_REGION RtGEF SYNONYMOUS_CODING RtGEF	TF binding site mE1_TFBS_cad
2L	15105324	2L_15105324_SNP [dm3] 2L_15105324_SNP [dm6]	A	T	3.906e^-4	0.977	INTERGENIC
2L	1786670	2L_1786670_SNP [dm3] 2L_1786670_SNP [dm6]	G	A	3.918e^-4	0.977	INTERGENIC
X	9209472	X_9209472_SNP [dm3] X_9315439_SNP [dm6]	T	C	3.918e^-4	0.977	DOWNSTREAM CR44534 INTERGENIC
2L	15649039	2L_15649039_SNP [dm3] 2L_15649039_SNP [dm6]	C	T	3.924e^-4	0.977	INTRON CG4587
2L	17405206	2L_17405206_SNP [dm3] 2L_17405206_SNP [dm6]	T	C	3.925e^-4	0.977	DOWNSTREAM CLIP-190 INTRON CLIP-190
3R	25377694	3R_25377694_SNP [dm3] 3R_29551972_SNP [dm6]	A	G	3.930e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_run
2R	5790593	2R_5790593_SNP [dm3] 2R_9903088_SNP [dm6]	A	G	3.931e^-4	0.977	INTRON CG1441
2R	12465736	2R_12465736_SNP [dm3] 2R_16578231_SNP [dm6]	T	G	3.937e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	12080621	2L_12080621_SNP [dm3] 2L_12080621_SNP [dm6]	A	G	3.944e^-4	0.977	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19009848	3L_19009848_SNP [dm3] 3L_19016748_SNP [dm6]	C	T	3.946e^-4	0.977	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5663721	2R_5663721_SNP [dm3] 2R_9776216_SNP [dm6]	G	T	3.948e^-4	0.977	INTRON CG1688 EXON CR44207
X	6688110	X_6688110_SNP [dm3] X_6794077_SNP [dm6]	T	C	3.950e^-4	0.977	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3135971	3L_3135971_SNP [dm3] 3L_3135971_SNP [dm6]	A	G	3.955e^-4	0.977	INTRON CG11537
X	4568094	X_4568094_SNP [dm3] X_4674061_SNP [dm6]	A	G	3.957e^-4	0.977	INTRON rap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10626432	3L_10626432_SNP [dm3] 3L_10633332_SNP [dm6]	G	A	3.981e^-4	0.977	INTRON CG34001 & 1 other
3L	10626438	3L_10626438_SNP [dm3] 3L_10633338_SNP [dm6]	G	C	3.981e^-4	0.977	INTRON CG34001 & 1 other
3L	10626450	3L_10626450_SNP [dm3] 3L_10633350_SNP [dm6]	C	A	3.981e^-4	0.977	INTRON CG34001 & 1 other
3L	10626468	3L_10626468_SNP [dm3] 3L_10633368_SNP [dm6]	T	G	3.981e^-4	0.977	INTRON CG34001 & 1 other
X	9730607	X_9730607_SNP [dm3] X_9836574_SNP [dm6]	C	A	3.982e^-4	0.977	INTRON CG32698
3L	13623864	3L_13623864_SNP [dm3] 3L_13630764_SNP [dm6]	C	T	3.983e^-4	0.977	INTRON bru-3
2R	13205715	2R_13205715_SNP [dm3] 2R_17318210_SNP [dm6]	C	T	3.987e^-4	0.977	INTRON mbl
3R	22069482	3R_22069482_SNP [dm3] 3R_26243760_SNP [dm6]	G	A	3.988e^-4	0.977	INTRON CR42745
X	907331	X_907331_SNP [dm3] X_1013298_SNP [dm6]	C	A	3.989e^-4	0.977	UTR_5_PRIME su_w[a]_ DOWNSTREAM CG14631 & 1 other
2L	11451414	2L_11451414_DEL [dm3] 2L_11451414_DEL [dm6]	TTT	T	3.993e^-4	0.977	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6268534	2L_6268534_SNP [dm3] 2L_6268534_SNP [dm6]	T	G	3.994e^-4	0.977	INTRON Ddr
X	11366495	X_11366495_SNP [dm3] X_11472462_SNP [dm6]	G	A	3.994e^-4	0.977	INTRON CG43155
2L	14575412	2L_14575412_SNP [dm3] 2L_14575412_SNP [dm6]	G	T	3.996e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9296512	3L_9296512_SNP [dm3] 3L_9303412_SNP [dm6]	A	G	3.999e^-4	0.977	INTERGENIC
3R	19402766	3R_19402766_DEL [dm3] 3R_23577044_DEL [dm6]	AA	A	4.006e^-4	0.977	INTRON beat-IV
3R	9942915	3R_9942915_SNP [dm3] 3R_14117193_SNP [dm6]	G	A	4.012e^-4	0.977	INTRON Kif19A
X	13260161	X_13260161_INS [dm3] X_13366128_INS [dm6]	A	AA	4.018e^-4	0.977	UTR_3_PRIME Syt12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16584562	2L_16584562_SNP [dm3] 2L_16584562_SNP [dm6]	A	C	4.029e^-4	0.977	INTRON CG42389
2L	7720085	2L_7720085_SNP [dm3] 2L_7720085_SNP [dm6]	A	G	4.030e^-4	0.977	SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
2R	5662670	2R_5662670_SNP [dm3] 2R_9775165_SNP [dm6]	A	G	4.041e^-4	0.977	INTRON CG1688 EXON CR44207
2L	16384914	2L_16384914_SNP [dm3] 2L_16384914_SNP [dm6]	G	T	4.055e^-4	0.977	INTERGENIC
2R	1378066	2R_1378066_SNP [dm3] 2R_5490561_SNP [dm6]	C	T	4.057e^-4	0.977	INTRON CG30440	transposable element FlyBase
2L	17418945	2L_17418945_SNP [dm3] 2L_17418945_SNP [dm6]	C	A	4.063e^-4	0.977	SYNONYMOUS_CODING Dif	TF binding site mE1_TFBS_cad
2R	714745	2R_714745_SNP [dm3] 2R_4827240_SNP [dm6]	G	A	4.070e^-4	0.977	INTERGENIC	transposable element FlyBase
2L	20380849	2L_20380849_SNP [dm3] 2L_20380849_SNP [dm6]	G	A	4.101e^-4	0.977	INTRON CG16798
2L	19813312	2L_19813312_SNP [dm3] 2L_19813312_SNP [dm6]	T	C	4.130e^-4	0.977	DOWNSTREAM CG13962 & 1 other INTRON sick	transposable element FlyBase
X	9215864	X_9215864_SNP [dm3] X_9321831_SNP [dm6]	A	G	4.134e^-4	0.977	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3276966	2L_3276966_SNP [dm3] 2L_3276966_SNP [dm6]	C	T	4.140e^-4	0.977	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad
2R	16697017	2R_16697017_SNP [dm3] 2R_20809512_SNP [dm6]	G	T	4.142e^-4	0.977	INTERGENIC
X	14780391	X_14780391_DEL [dm3] X_14886358_DEL [dm6]	CC	A	4.146e^-4	0.977	UTR_3_PRIME CG9514 INTRON Flo2	TF binding site mE1_TFBS_chinmo
3L	13851801	3L_13851801_SNP [dm3] 3L_13858701_SNP [dm6]	C	G	4.148e^-4	0.977	SPLICE_SITE_REGION Hml INTRON Hml	TF binding site mE1_TFBS_cad
X	9209473	X_9209473_SNP [dm3] X_9315440_SNP [dm6]	A	T	4.154e^-4	0.977	DOWNSTREAM CR44534 INTERGENIC
2R	19340254	2R_19340254_SNP [dm3] 2R_23452731_SNP [dm6]	C	T	4.168e^-4	0.977	INTRON CG43795
3L	10368153	3L_10368153_SNP [dm3] 3L_10375053_SNP [dm6]	T	A	4.184e^-4	0.977	INTERGENIC
3L	16090268	3L_16090268_SNP [dm3] 3L_16097168_SNP [dm6]	T	C	4.190e^-4	0.977	NON_SYNONYMOUS_CODING CG13074 UPSTREAM ms_3_72Dt	TF binding site mE1_TFBS_cad
2L	14761030	2L_14761030_SNP [dm3] 2L_14761030_SNP [dm6]	A	G	4.200e^-4	0.977	SYNONYMOUS_CODING CG4691 UPSTREAM CR44858
2R	11692905	2R_11692905_SNP [dm3] 2R_15805400_SNP [dm6]	A	T	4.212e^-4	0.977	INTRON tun & 1 other
2R	11692932	2R_11692932_SNP [dm3] 2R_15805427_SNP [dm6]	T	C	4.212e^-4	0.977	INTRON tun & 1 other
2L	17412672	2L_17412672_SNP [dm3] 2L_17412672_SNP [dm6]	G	A	4.218e^-4	0.977	UPSTREAM CG31803 DOWNSTREAM Dif INTRON CG15141
2L	9127801	2L_9127801_SNP [dm3] 2L_9127801_SNP [dm6]	G	A	4.237e^-4	0.977	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
X	15721768	X_15721768_SNP [dm3] X_15827735_SNP [dm6]	T	G	4.249e^-4	0.977	DOWNSTREAM Chc & 1 other INTERGENIC
3L	3135881	3L_3135881_SNP [dm3] 3L_3135881_SNP [dm6]	A	G	4.252e^-4	0.977	INTRON CG11537
X	5539813	X_5539813_SNP [dm3] X_5645780_SNP [dm6]	C	T	4.257e^-4	0.977	INTRON CG42492
2L	12353046	2L_12353046_SNP [dm3] 2L_12353046_SNP [dm6]	T	A	4.260e^-4	0.977	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3L	7854267	3L_7854267_SNP [dm3] 3L_7861167_SNP [dm6]	C	T	4.261e^-4	0.977	INTRON Pdp1
2L	20383925	2L_20383925_DEL [dm3] 2L_20383925_DEL [dm6]	CCTCACAC	C	4.268e^-4	0.977	INTERGENIC
3L	8361782	3L_8361782_INS [dm3] 3L_8368682_INS [dm6]	C	TAGGT	4.274e^-4	0.977	INTERGENIC
2L	1357974	2L_1357974_SNP [dm3] 2L_1357974_SNP [dm6]	G	C	4.277e^-4	0.977	DOWNSTREAM CG31659 INTERGENIC
2L	3480083	2L_3480083_SNP [dm3] 2L_3480083_SNP [dm6]	C	T	4.279e^-4	0.977	DOWNSTREAM Thor & 1 other INTERGENIC
2R	16746414	2R_16746414_SNP [dm3] 2R_20858909_SNP [dm6]	C	A	4.283e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9964203	2L_9964203_SNP [dm3] 2L_9964203_SNP [dm6]	A	T	4.287e^-4	0.977	UTR_3_PRIME Dref UPSTREAM CG5850 DOWNSTREAM Dref
2L	11205044	2L_11205044_SNP [dm3] 2L_11205044_SNP [dm6]	T	C	4.302e^-4	0.977	DOWNSTREAM CR43859 INTERGENIC
3L	8361784	3L_8361784_INS [dm3] 3L_8368684_INS [dm6]	A	AC	4.303e^-4	0.977	INTERGENIC
3L	4140525	3L_4140525_SNP [dm3] 3L_4140525_SNP [dm6]	T	G	4.313e^-4	0.977	UTR_3_PRIME Ras64B UPSTREAM Akh	TF binding site mE1_TFBS_cad
3L	15187048	3L_15187048_SNP [dm3] 3L_15193948_SNP [dm6]	C	T	4.317e^-4	0.977	INTERGENIC
3R	18836051	3R_18836051_SNP [dm3] 3R_23010329_SNP [dm6]	G	C	4.321e^-4	0.977	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo
2L	2796256	2L_2796256_SNP [dm3] 2L_2796256_SNP [dm6]	C	T	4.324e^-4	0.977	UPSTREAM Syt1 INTRON Syt1
3R	25135538	3R_25135538_SNP [dm3] 3R_29309816_SNP [dm6]	C	G	4.325e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20350993	2L_20350993_SNP [dm3] 2L_20350993_SNP [dm6]	T	C	4.326e^-4	0.977	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
3L	20067053	3L_20067053_SNP [dm3] 3L_20073953_SNP [dm6]	C	A	4.326e^-4	0.977	INTRON sNPF-R	TF binding site mE1_TFBS_cad
3L	10422644	3L_10422644_DEL [dm3] 3L_10429544_DEL [dm6]	CT	C	4.328e^-4	0.977	DOWNSTREAM Ir67b INTERGENIC
2L	2166595	2L_2166595_SNP [dm3] 2L_2166595_SNP [dm6]	G	A	4.329e^-4	0.977	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	8675725	X_8675725_INS [dm3] X_8781692_INS [dm6]	T	TA	4.332e^-4	0.977	INTRON Lim1
3R	25980067	3R_25980067_SNP [dm3] 3R_30154345_SNP [dm6]	G	T	4.334e^-4	0.977	INTRON CG11498	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14172357	3R_14172357_SNP [dm3] 3R_18346635_SNP [dm6]	G	T	4.336e^-4	0.977	INTRON CG15803
3R	15951772	3R_15951772_SNP [dm3] 3R_20126050_SNP [dm6]	C	A	4.350e^-4	0.977	INTERGENIC	transposable element FlyBase
3R	26268839	3R_26268839_SNP [dm3] 3R_30443117_SNP [dm6]	A	T	4.352e^-4	0.977	DOWNSTREAM Osi23 INTRON CG15537
2L	4442453	2L_4442453_SNP [dm3] 2L_4442453_SNP [dm6]	G	A	4.356e^-4	0.977	UTR_5_PRIME CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue INTRON CG15432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	12951205	X_12951205_SNP [dm3] X_13057172_SNP [dm6]	A	C	4.366e^-4	0.977	INTRON rad
2L	14748920	2L_14748920_SNP [dm3] 2L_14748920_SNP [dm6]	T	A	4.368e^-4	0.977	INTERGENIC
3L	4146131	3L_4146131_SNP [dm3] 3L_4146131_SNP [dm6]	A	T	4.371e^-4	0.977	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20091532	2L_20091532_SNP [dm3] 2L_20091532_SNP [dm6]	A	C	4.381e^-4	0.977	UPSTREAM CG10721 & 1 other INTRON CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25384663	3R_25384663_SNP [dm3] 3R_29558941_SNP [dm6]	C	T	4.383e^-4	0.977	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4188722	2R_4188722_SNP [dm3] 2R_8301217_SNP [dm6]	C	T	4.389e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15463770	2R_15463770_SNP [dm3] 2R_19576265_SNP [dm6]	C	T	4.389e^-4	0.977	INTRON sm
2L	7377543	2L_7377543_SNP [dm3] 2L_7377543_SNP [dm6]	C	T	4.393e^-4	0.977	UPSTREAM ninaC DOWNSTREAM Wnt10 INTERGENIC
X	10823086	X_10823086_SNP [dm3] X_10929053_SNP [dm6]	A	G	4.396e^-4	0.977	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15467452	2R_15467452_DEL [dm3] 2R_19579947_DEL [dm6]	GCG	G	4.397e^-4	0.977	INTRON sm
3R	25301850	3R_25301850_SNP [dm3] 3R_29476128_SNP [dm6]	G	A	4.401e^-4	0.977	INTRON Ptp99A
2R	5758346	2R_5758346_SNP [dm3] 2R_9870841_SNP [dm6]	A	T	4.408e^-4	0.977	UPSTREAM cbx & 1 other INTRON cbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11649228	3L_11649228_SNP [dm3] 3L_11656128_SNP [dm6]	C	T	4.418e^-4	0.977	UPSTREAM mir-274 INTRON CG32085
2R	7824558	2R_7824558_SNP [dm3] 2R_11937053_SNP [dm6]	A	G	4.421e^-4	0.977	INTERGENIC
2R	16744734	2R_16744734_SNP [dm3] 2R_20857229_SNP [dm6]	G	T	4.434e^-4	0.977	INTERGENIC
2L	20349523	2L_20349523_SNP [dm3] 2L_20349523_SNP [dm6]	A	G	4.436e^-4	0.977	SYNONYMOUS_CODING La UPSTREAM RtGEF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14091347	2L_14091347_SNP [dm3] 2L_14091347_SNP [dm6]	A	T	4.438e^-4	0.977	UTR_3_PRIME nAChRalpha5
2L	12470677	2L_12470677_SNP [dm3] 2L_12470677_SNP [dm6]	G	C	4.440e^-4	0.977	INTRON bun
2R	11797969	2R_11797969_SNP [dm3] 2R_15910464_SNP [dm6]	G	A	4.444e^-4	0.977	INTRON sli
3L	3579700	3L_3579700_SNP [dm3] 3L_3579700_SNP [dm6]	A	C	4.448e^-4	0.977	INTRON Eip63E
2R	13805482	2R_13805482_SNP [dm3] 2R_17917977_SNP [dm6]	T	A	4.460e^-4	0.977	INTRON Elk
2L	12080638	2L_12080638_SNP [dm3] 2L_12080638_SNP [dm6]	G	T	4.463e^-4	0.977	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13122116	2L_13122116_SNP [dm3] 2L_13122116_SNP [dm6]	T	G	4.466e^-4	0.977	INTERGENIC
X	15525057	X_15525057_SNP [dm3] X_15631024_SNP [dm6]	C	T	4.469e^-4	0.977	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	25301851	3R_25301851_DEL [dm3] 3R_29476129_DEL [dm6]	TGTAAA	T	4.470e^-4	0.977	INTRON Ptp99A
2R	12568158	2R_12568158_DEL [dm3] 2R_16680653_DEL [dm6]	TG	T	4.478e^-4	0.977	INTRON CG30463
2L	7216202	2L_7216202_SNP [dm3] 2L_7216202_SNP [dm6]	A	T	4.478e^-4	0.977	INTRON CG13784
3L	7635942	3L_7635942_SNP [dm3] 3L_7642842_SNP [dm6]	T	G	4.481e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6003200	2R_6003200_SNP [dm3] 2R_10115695_SNP [dm6]	G	T	4.485e^-4	0.977	SYNONYMOUS_CODING Pfk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16921428	2R_16921428_SNP [dm3] 2R_21033923_SNP [dm6]	T	C	4.496e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16205219	3L_16205219_SNP [dm3] 3L_16212119_SNP [dm6]	G	T	4.498e^-4	0.977	DOWNSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19296445	3R_19296445_SNP [dm3] 3R_23470723_SNP [dm6]	T	C	4.500e^-4	0.977	INTRON CG4374
2R	17373832	2R_17373832_SNP [dm3] 2R_21486327_SNP [dm6]	A	T	4.506e^-4	0.977	SPLICE_SITE_REGION Sara DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2751409	2L_2751409_SNP [dm3] 2L_2751409_SNP [dm6]	A	C	4.522e^-4	0.977	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17001408	2R_17001408_SNP [dm3] 2R_21113903_SNP [dm6]	G	A	4.527e^-4	0.977	INTRON ktub
X	13998105	X_13998105_SNP [dm3] X_14104072_SNP [dm6]	T	C	4.543e^-4	0.977	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24478338	3R_24478338_SNP [dm3] 3R_28652616_SNP [dm6]	A	C	4.549e^-4	0.977	INTERGENIC
2L	17855224	2L_17855224_SNP [dm3] 2L_17855224_SNP [dm6]	G	A	4.565e^-4	0.977	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20385295	2R_20385295_SNP [dm3] 2R_24497772_SNP [dm6]	T	C	4.575e^-4	0.977	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20385311	2R_20385311_SNP [dm3] 2R_24497788_SNP [dm6]	C	T	4.575e^-4	0.977	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6270716	2L_6270716_SNP [dm3] 2L_6270716_SNP [dm6]	T	C	4.588e^-4	0.977	UPSTREAM CR42735 INTRON Ddr
2R	20381245	2R_20381245_SNP [dm3] 2R_24493722_SNP [dm6]	G	A	4.595e^-4	0.977	SYNONYMOUS_CODING CG13590 UPSTREAM CG13589 & 1 other
2L	16385013	2L_16385013_SNP [dm3] 2L_16385013_SNP [dm6]	G	A	4.596e^-4	0.977	INTERGENIC
2R	17137616	2R_17137616_SNP [dm3] 2R_21250111_SNP [dm6]	C	T	4.598e^-4	0.977	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	4277258	X_4277258_SNP [dm3] X_4383225_SNP [dm6]	G	A	4.600e^-4	0.977	DOWNSTREAM CG12688 INTERGENIC
X	16306802	X_16306802_SNP [dm3] X_16412769_SNP [dm6]	C	T	4.602e^-4	0.977	INTRON CG4301	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13998119	X_13998119_SNP [dm3] X_14104086_SNP [dm6]	G	A	4.613e^-4	0.977	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13998128	X_13998128_SNP [dm3] X_14104095_SNP [dm6]	G	T	4.613e^-4	0.977	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17550250	2L_17550250_SNP [dm3] 2L_17550250_SNP [dm6]	C	T	4.613e^-4	0.977	INTERGENIC
3R	21032309	3R_21032309_SNP [dm3] 3R_25206587_SNP [dm6]	C	G	4.613e^-4	0.977	INTRON CG13654 & 1 other
3R	21032320	3R_21032320_SNP [dm3] 3R_25206598_SNP [dm6]	G	T	4.613e^-4	0.977	INTRON CG13654 & 1 other
3R	10283876	3R_10283876_SNP [dm3] 3R_14458154_SNP [dm6]	A	C	4.627e^-4	0.977	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4028138	2R_4028138_SNP [dm3] 2R_8140633_SNP [dm6]	G	A	4.631e^-4	0.977	INTRON Lpin	TF binding site mE1_TFBS_chinmo
X	18877552	X_18877552_SNP [dm3] X_18983519_SNP [dm6]	A	C	4.633e^-4	0.977	INTRON CG43759
2L	14358615	2L_14358615_SNP [dm3] 2L_14358615_SNP [dm6]	T	C	4.634e^-4	0.977	UTR_3_PRIME Rab14 UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other
3L	3189364	3L_3189364_SNP [dm3] 3L_3189364_SNP [dm6]	C	A	4.636e^-4	0.977	SYNONYMOUS_CODING CG42525 UPSTREAM CG14958	TF binding site mE1_TFBS_sens
3L	11922682	3L_11922682_SNP [dm3] 3L_11929582_SNP [dm6]	T	A	4.650e^-4	0.977	INTRON CG44837 & 1 other
2L	5821708	2L_5821708_SNP [dm3] 2L_5821708_SNP [dm6]	C	T	4.651e^-4	0.977	INTERGENIC
2L	3922110	2L_3922110_SNP [dm3] 2L_3922110_SNP [dm6]	G	A	4.652e^-4	0.977	INTRON fred
2L	11302035	2L_11302035_SNP [dm3] 2L_11302035_SNP [dm6]	G	A	4.652e^-4	0.977	INTERGENIC
3L	13623892	3L_13623892_SNP [dm3] 3L_13630792_SNP [dm6]	T	A	4.655e^-4	0.977	INTRON bru-3
2R	18376011	2R_18376011_SNP [dm3] 2R_22488506_SNP [dm6]	G	A	4.656e^-4	0.977	NON_SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
3R	20713000	3R_20713000_SNP [dm3] 3R_24887278_SNP [dm6]	C	G	4.661e^-4	0.977	INTRON CG31121	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5663719	2R_5663719_SNP [dm3] 2R_9776214_SNP [dm6]	G	C	4.662e^-4	0.977	INTRON CG1688 EXON CR44207
X	14286052	X_14286052_SNP [dm3] X_14392019_SNP [dm6]	G	A	4.664e^-4	0.977	INTRON dpr8
3R	9685487	3R_9685487_SNP [dm3] 3R_13859765_SNP [dm6]	G	T	4.671e^-4	0.977	INTERGENIC
3L	11648966	3L_11648966_DEL [dm3] 3L_11655866_DEL [dm6]	TT	T	4.671e^-4	0.977	INTRON CG32085
3L	10146305	3L_10146305_SNP [dm3] 3L_10153205_SNP [dm6]	T	A	4.678e^-4	0.977	DOWNSTREAM CG8072 INTRON dpr10
3L	2734448	3L_2734448_SNP [dm3] 3L_2734448_SNP [dm6]	G	T	4.691e^-4	0.977	UTR_5_PRIME Mrtf INTRON Mrtf
3L	2681110	3L_2681110_SNP [dm3] 3L_2681110_SNP [dm6]	C	T	4.702e^-4	0.977	INTRON Fife
X	16798462	X_16798462_SNP [dm3] X_16904429_SNP [dm6]	G	T	4.704e^-4	0.977	EXON CR44754
3R	19991332	3R_19991332_SNP [dm3] 3R_24165610_SNP [dm6]	C	T	4.720e^-4	0.977	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15853888	X_15853888_SNP [dm3] X_15959855_SNP [dm6]	C	T	4.724e^-4	0.977	INTRON mmd	TF binding site mE1_TFBS_inv
X	15432020	X_15432020_SNP [dm3] X_15537987_SNP [dm6]	G	A	4.724e^-4	0.977	INTRON Ac13E	TF binding site mE1_TFBS_cad
3R	19571027	3R_19571027_SNP [dm3] 3R_23745305_SNP [dm6]	A	C	4.738e^-4	0.977	INTRON Hmgcr
2L	1757068	2L_1757068_SNP [dm3] 2L_1757068_SNP [dm6]	T	C	4.759e^-4	0.977	UPSTREAM Gr22f INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	13418253	3L_13418253_SNP [dm3] 3L_13425153_SNP [dm6]	C	T	4.760e^-4	0.977	NON_SYNONYMOUS_CODING CG14106 UPSTREAM CG33263 DOWNSTREAM CG14105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4248502	3L_4248502_SNP [dm3] 3L_4248502_SNP [dm6]	A	G	4.766e^-4	0.977	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16652666	X_16652666_SNP [dm3] X_16758633_SNP [dm6]	A	G	4.769e^-4	0.977	INTRON if
2L	12353000	2L_12353000_SNP [dm3] 2L_12353000_SNP [dm6]	A	T	4.774e^-4	0.977	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2R	9403265	2R_9403265_SNP [dm3] 2R_13515760_SNP [dm6]	T	A	4.779e^-4	0.977	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10060899	3L_10060899_SNP [dm3] 3L_10067799_SNP [dm6]	G	C	4.792e^-4	0.977	INTRON dpr6
3L	16205224	3L_16205224_SNP [dm3] 3L_16212124_SNP [dm6]	A	T	4.802e^-4	0.977	DOWNSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13202114	2R_13202114_SNP [dm3] 2R_17314609_SNP [dm6]	A	G	4.803e^-4	0.977	INTRON mbl
3L	5628487	3L_5628487_SNP [dm3] 3L_5635387_SNP [dm6]	C	T	4.820e^-4	0.977	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3317166	3L_3317166_INS [dm3] 3L_3317166_INS [dm6]	T	TTCACCAAGTTCGTT...	4.838e^-4	0.977	DOWNSTREAM PIG-C & 1 other INTERGENIC
X	14107376	X_14107376_SNP [dm3] X_14213343_SNP [dm6]	G	A	4.840e^-4	0.977	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	14561231	3R_14561231_SNP [dm3] 3R_18735509_SNP [dm6]	T	C	4.842e^-4	0.977	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad
2L	15847946	2L_15847946_SNP [dm3] 2L_15847946_SNP [dm6]	C	T	4.846e^-4	0.977	DOWNSTREAM CR43763 INTERGENIC
2L	15830124	2L_15830124_SNP [dm3] 2L_15830124_SNP [dm6]	G	A	4.848e^-4	0.977	INTERGENIC
3L	14381391	3L_14381391_SNP [dm3] 3L_14388291_SNP [dm6]	A	C	4.860e^-4	0.977	INTERGENIC
2R	10564206	2R_10564206_SNP [dm3] 2R_14676701_SNP [dm6]	A	G	4.874e^-4	0.977	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
2L	16879230	2L_16879230_SNP [dm3] 2L_16879230_SNP [dm6]	T	C	4.874e^-4	0.977	START_GAINED CG32832 UTR_5_PRIME CG32832 UPSTREAM CG31743 & 1 other DOWNSTREAM CR31781	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9954838	3L_9954838_SNP [dm3] 3L_9961738_SNP [dm6]	T	C	4.874e^-4	0.977	SYNONYMOUS_CODING CG34356
3L	3693141	3L_3693141_SNP [dm3] 3L_3693141_SNP [dm6]	C	A	4.884e^-4	0.977	DOWNSTREAM CR43485 INTERGENIC
X	18797966	X_18797966_INS [dm3] X_18903933_INS [dm6]	T	TTTT	4.892e^-4	0.977	INTRON CG7378
3L	10373747	3L_10373747_SNP [dm3] 3L_10380647_SNP [dm6]	T	G	4.894e^-4	0.977	INTERGENIC
2R	20327346	2R_20327346_SNP [dm3] 2R_24439823_SNP [dm6]	G	A	4.895e^-4	0.977	INTERGENIC
3L	2679829	3L_2679829_SNP [dm3] 3L_2679829_SNP [dm6]	G	C	4.895e^-4	0.977	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
3R	14172464	3R_14172464_SNP [dm3] 3R_18346742_SNP [dm6]	A	T	4.903e^-4	0.977	INTRON CG15803
X	12674624	X_12674624_INS [dm3] X_12780591_INS [dm6]	T	GACA	4.908e^-4	0.977	INTRON CG32647
3R	24274244	3R_24274244_SNP [dm3] 3R_28448522_SNP [dm6]	T	A	4.912e^-4	0.977	INTRON beat-VI
3R	11424705	3R_11424705_SNP [dm3] 3R_15598983_SNP [dm6]	T	G	4.914e^-4	0.977	INTERGENIC
2R	8003714	2R_8003714_SNP [dm3] 2R_12116209_SNP [dm6]	C	T	4.922e^-4	0.977	INTRON jeb
3R	26993666	3R_26993666_SNP [dm3] 3R_31167944_SNP [dm6]	T	C	4.931e^-4	0.977	INTRON Gycbeta100B & 1 other
2L	17399201	2L_17399201_SNP [dm3] 2L_17399201_SNP [dm6]	C	T	4.935e^-4	0.977	INTRON CLIP-190
2L	22180611	2L_22180611_DEL [dm3] 2L_22180611_DEL [dm6]	AG	A	4.937e^-4	0.977	INTRON CG3635	transposable element FlyBase
3L	19142505	3L_19142505_SNP [dm3] 3L_19149405_SNP [dm6]	T	A	4.938e^-4	0.977	INTRON fz2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	14611323	3R_14611323_SNP [dm3] 3R_18785601_SNP [dm6]	C	G	4.945e^-4	0.977	INTRON CG7720
2L	14354182	2L_14354182_SNP [dm3] 2L_14354182_SNP [dm6]	C	T	4.953e^-4	0.977	SYNONYMOUS_CODING l_2_34Fd UPSTREAM Rab14	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22507654	3R_22507654_SNP [dm3] 3R_26681932_SNP [dm6]	G	A	4.974e^-4	0.977	UTR_5_PRIME beat-VII
2L	1731092	2L_1731092_SNP [dm3] 2L_1731092_SNP [dm6]	C	T	4.978e^-4	0.977	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
3R	25292746	3R_25292746_SNP [dm3] 3R_29467024_SNP [dm6]	C	T	4.979e^-4	0.977	INTRON Ptp99A
3L	823556	3L_823556_SNP [dm3] 3L_823556_SNP [dm6]	T	C	4.982e^-4	0.977	INTERGENIC
3R	23913065	3R_23913065_DEL [dm3] 3R_28087343_DEL [dm6]	CAC	C	4.992e^-4	0.977	UTR_3_PRIME CG34362	TF binding site BDTNP1_TFBS_twi
2R	5192462	2R_5192462_SNP [dm3] 2R_9304957_SNP [dm6]	G	A	5.000e^-4	0.977	INTRON Myd88	TF binding site mE1_TFBS_cad
2L	6824652	2L_6824652_SNP [dm3] 2L_6824652_SNP [dm6]	A	G	5.002e^-4	0.977	INTRON sens-2
2L	4873733	2L_4873733_SNP [dm3] 2L_4873733_SNP [dm6]	A	G	5.008e^-4	0.977	UTR_3_PRIME pog INTRON pog
3R	18268615	3R_18268615_SNP [dm3] 3R_22442893_SNP [dm6]	G	A	5.010e^-4	0.977	SYNONYMOUS_CODING CG12499
3L	2488868	3L_2488868_SNP [dm3] 3L_2488868_SNP [dm6]	G	A	5.011e^-4	0.977	UTR_5_PRIME CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2890628	3L_2890628_SNP [dm3] 3L_2890628_SNP [dm6]	G	T	5.014e^-4	0.977	INTRON spz5
2R	12465845	2R_12465845_SNP [dm3] 2R_16578340_SNP [dm6]	C	A	5.018e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	5.032e^-4	0.977	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	3448965	3L_3448965_INS [dm3] 3L_3448965_INS [dm6]	A	AA	5.036e^-4	0.977	INTRON eIF5B
2R	14658162	2R_14658162_SNP [dm3] 2R_18770657_SNP [dm6]	C	A	5.044e^-4	0.977	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2L	11969999	2L_11969999_SNP [dm3] 2L_11969999_SNP [dm6]	A	G	5.061e^-4	0.977	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10001540	3L_10001540_SNP [dm3] 3L_10008440_SNP [dm6]	G	C	5.064e^-4	0.977	INTRON dpr6
X	15721755	X_15721755_SNP [dm3] X_15827722_SNP [dm6]	T	A	5.077e^-4	0.977	DOWNSTREAM Chc & 1 other INTERGENIC
2R	3449099	2R_3449099_SNP [dm3] 2R_7561594_SNP [dm6]	G	A	5.078e^-4	0.977	UTR_3_PRIME Corin
3L	10437177	3L_10437177_SNP [dm3] 3L_10444077_SNP [dm6]	T	C	5.079e^-4	0.977	INTERGENIC
3L	11692826	3L_11692826_SNP [dm3] 3L_11699726_SNP [dm6]	G	T	5.081e^-4	0.977	UTR_3_PRIME CG11658 UPSTREAM CG6053 DOWNSTREAM CG11658
2L	1852645	2L_1852645_SNP [dm3] 2L_1852645_SNP [dm6]	T	A	5.082e^-4	0.977	INTRON wry
3L	2791256	3L_2791256_SNP [dm3] 3L_2791256_SNP [dm6]	A	C	5.089e^-4	0.977	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13204369	2R_13204369_SNP [dm3] 2R_17316864_SNP [dm6]	G	T	5.096e^-4	0.977	INTRON mbl
2R	20386258	2R_20386258_SNP [dm3] 2R_24498735_SNP [dm6]	T	A	5.107e^-4	0.977	DOWNSTREAM Ssl & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11922645	3L_11922645_SNP [dm3] 3L_11929545_SNP [dm6]	T	C	5.113e^-4	0.977	INTRON CG44837 & 1 other
X	13790823	X_13790823_INS [dm3] X_13896790_INS [dm6]	A	CTGCATAAATT...	5.117e^-4	0.977	INTRON mamo
2L	17396990	2L_17396990_SNP [dm3] 2L_17396990_SNP [dm6]	C	A	5.117e^-4	0.977	INTRON CLIP-190
X	1616140	X_1616140_DEL [dm3] X_1722107_DEL [dm6]	CCGGATGGCTGGC...	C	5.125e^-4	0.977	INTERGENIC
2R	3921156	2R_3921156_SNP [dm3] 2R_8033651_SNP [dm6]	G	A	5.126e^-4	0.977	INTRON Optix
2L	2086820	2L_2086820_SNP [dm3] 2L_2086820_SNP [dm6]	T	G	5.133e^-4	0.977	INTRON dpr3
2R	12131893	2R_12131893_SNP [dm3] 2R_16244388_SNP [dm6]	G	T	5.135e^-4	0.977	INTRON CngA	TF binding site mE1_TFBS_inv
2R	9338009	2R_9338009_SNP [dm3] 2R_13450504_SNP [dm6]	T	A	5.139e^-4	0.977	UPSTREAM cbs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20359541	2L_20359541_SNP [dm3] 2L_20359541_SNP [dm6]	A	G	5.150e^-4	0.977	DOWNSTREAM RtGEF INTRON RtGEF
X	16964274	X_16964274_SNP [dm3] X_17070241_SNP [dm6]	G	A	5.154e^-4	0.977	UTR_3_PRIME CG8949	TF binding site mE1_TFBS_cad
X	13456999	X_13456999_SNP [dm3] X_13562966_SNP [dm6]	T	C	5.155e^-4	0.977	UTR_3_PRIME CG32633 UPSTREAM Tango13 DOWNSTREAM CG32633	TF binding site mE1_TFBS_zfh1
2L	16383057	2L_16383057_SNP [dm3] 2L_16383057_SNP [dm6]	G	T	5.157e^-4	0.977	INTERGENIC
3R	23186145	3R_23186145_SNP [dm3] 3R_27360423_SNP [dm6]	T	C	5.160e^-4	0.977	SYNONYMOUS_CODING CG42534
2R	12891056	2R_12891056_SNP [dm3] 2R_17003551_SNP [dm6]	A	G	5.162e^-4	0.977	UTR_3_PRIME CG6796 DOWNSTREAM NiPp1
2L	11293790	2L_11293790_SNP [dm3] 2L_11293790_SNP [dm6]	C	T	5.163e^-4	0.977	INTERGENIC
3L	3682683	3L_3682683_SNP [dm3] 3L_3682683_SNP [dm6]	C	T	5.167e^-4	0.977	INTERGENIC
2L	21955496	2L_21955496_SNP [dm3] 2L_21955496_SNP [dm6]	A	G	5.167e^-4	0.977	INTERGENIC
2R	7458017	2R_7458017_SNP [dm3] 2R_11570512_SNP [dm6]	A	T	5.168e^-4	0.977	INTERGENIC
X	9659311	X_9659311_SNP [dm3] X_9765278_SNP [dm6]	T	A	5.180e^-4	0.977	INTERGENIC
2R	17683011	2R_17683011_SNP [dm3] 2R_21795506_SNP [dm6]	A	T	5.183e^-4	0.977	UPSTREAM CG34204 INTERGENIC
2L	14091426	2L_14091426_SNP [dm3] 2L_14091426_SNP [dm6]	A	C	5.185e^-4	0.977	UTR_3_PRIME nAChRalpha5
3L	11668831	3L_11668831_SNP [dm3] 3L_11675731_SNP [dm6]	A	T	5.186e^-4	0.977	INTRON CG32085	TF binding site mE1_TFBS_cad
3R	25158317	3R_25158317_SNP [dm3] 3R_29332595_SNP [dm6]	C	T	5.193e^-4	0.977	INTERGENIC
2L	9128083	2L_9128083_SNP [dm3] 2L_9128083_SNP [dm6]	A	G	5.196e^-4	0.977	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14069436	2L_14069436_SNP [dm3] 2L_14069436_SNP [dm6]	A	G	5.213e^-4	0.977	INTRON nAChRalpha5
2L	9137664	2L_9137664_SNP [dm3] 2L_9137664_SNP [dm6]	G	A	5.223e^-4	0.977	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv
2R	4733816	2R_4733816_SNP [dm3] 2R_8846311_SNP [dm6]	G	T	5.237e^-4	0.977	INTRON sns
X	16429889	X_16429889_SNP [dm3] X_16535856_SNP [dm6]	T	A	5.238e^-4	0.977	INTERGENIC
3L	22693638	3L_22693638_SNP [dm3] 3L_22700538_SNP [dm6]	A	G	5.256e^-4	0.977	DOWNSTREAM CG45116 INTERGENIC
3R	19325668	3R_19325668_SNP [dm3] 3R_23499946_SNP [dm6]	G	A	5.258e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11281755	3L_11281755_INS [dm3] 3L_11288655_INS [dm6]	C	CA	5.259e^-4	0.977	UTR_3_PRIME CG6175
X	3891955	X_3891955_SNP [dm3] X_3997922_SNP [dm6]	T	C	5.271e^-4	0.977	INTERGENIC
2R	4010487	2R_4010487_SNP [dm3] 2R_8122982_SNP [dm6]	A	T	5.272e^-4	0.977	UTR_5_PRIME Asap UPSTREAM Nup50	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	3471625	2R_3471625_DEL [dm3] 2R_7584120_DEL [dm6]	GGTGGATATACA...	G	5.282e^-4	0.977	INTRON blow
2R	6996094	2R_6996094_SNP [dm3] 2R_11108589_SNP [dm6]	T	G	5.287e^-4	0.977	INTRON luna
X	21861917	X_21861917_SNP [dm3] X_22460081_SNP [dm6]	G	A	5.289e^-4	0.977	INTRON CG14619	transposable element FlyBase
3L	1171048	3L_1171048_DEL [dm3] 3L_1171048_DEL [dm6]	GAACAAATTG	G	5.299e^-4	0.977	INTRON bab2	regulatory region REDfly_CRMs
3L	12855387	3L_12855387_SNP [dm3] 3L_12862287_SNP [dm6]	A	T	5.309e^-4	0.977	NON_SYNONYMOUS_CODING CG10943 UPSTREAM CG32107
2L	3688453	2L_3688453_DEL [dm3] 2L_3688453_DEL [dm6]	GGATTTGC	G	5.312e^-4	0.977	INTRON CG34340
2L	6872808	2L_6872808_SNP [dm3] 2L_6872808_SNP [dm6]	G	C	5.317e^-4	0.977	UPSTREAM CR44915 EXON CR44914
3R	14172465	3R_14172465_SNP [dm3] 3R_18346743_SNP [dm6]	A	C	5.335e^-4	0.977	INTRON CG15803
3L	1386445	3L_1386445_SNP [dm3] 3L_1386445_SNP [dm6]	T	A	5.344e^-4	0.977	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	18424050	2R_18424050_SNP [dm3] 2R_22536545_SNP [dm6]	C	A	5.345e^-4	0.977	INTRON px
3L	10042034	3L_10042034_DEL [dm3] 3L_10048934_DEL [dm6]	TACAGTTGATTGATATTTTT...	T	5.354e^-4	0.977	INTRON dpr6
3R	14626068	3R_14626068_SNP [dm3] 3R_18800346_SNP [dm6]	C	T	5.364e^-4	0.977	UTR_3_PRIME CG18208
2R	6995975	2R_6995975_SNP [dm3] 2R_11108470_SNP [dm6]	A	G	5.370e^-4	0.977	INTRON luna
2R	13181512	2R_13181512_SNP [dm3] 2R_17294007_SNP [dm6]	G	A	5.375e^-4	0.977	INTRON mbl
3L	20066908	3L_20066908_SNP [dm3] 3L_20073808_SNP [dm6]	A	G	5.384e^-4	0.977	INTRON sNPF-R
X	7680015	X_7680015_SNP [dm3] X_7785982_SNP [dm6]	A	T	5.389e^-4	0.977	INTERGENIC
3L	8401763	3L_8401763_SNP [dm3] 3L_8408663_SNP [dm6]	A	G	5.414e^-4	0.977	SPLICE_SITE_REGION Oseg1 INTRON Oseg1
X	13573416	X_13573416_SNP [dm3] X_13679383_SNP [dm6]	T	A	5.428e^-4	0.977	INTRON CG12177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12948998	3L_12948998_SNP [dm3] 3L_12955898_SNP [dm6]	T	A	5.432e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3286730	3L_3286730_DEL [dm3] 3L_3286730_DEL [dm6]	TAGGAAAAAGTCA...	T	5.439e^-4	0.977	INTRON CG12017
2L	20346932	2L_20346932_SNP [dm3] 2L_20346932_SNP [dm6]	A	C	5.447e^-4	0.977	INTRON spir	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	20349550	2L_20349550_SNP [dm3] 2L_20349550_SNP [dm6]	A	G	5.449e^-4	0.977	SYNONYMOUS_CODING La UPSTREAM RtGEF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1518819	3L_1518819_SNP [dm3] 3L_1518819_SNP [dm6]	A	G	5.454e^-4	0.977	INTRON Psa	TF binding site mE1_TFBS_sens
X	4661928	X_4661928_SNP [dm3] X_4767895_SNP [dm6]	C	G	5.455e^-4	0.977	DOWNSTREAM CG15472 INTERGENIC
2L	20574414	2L_20574414_SNP [dm3] 2L_20574414_SNP [dm6]	G	A	5.467e^-4	0.977	INTRON CR45347	TF binding site mE1_TFBS_inv
2R	715059	2R_715059_SNP [dm3] 2R_4827554_SNP [dm6]	C	T	5.467e^-4	0.977	INTERGENIC	transposable element FlyBase
2R	14574371	2R_14574371_SNP [dm3] 2R_18686866_SNP [dm6]	C	T	5.468e^-4	0.977	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16589335	2R_16589335_SNP [dm3] 2R_20701830_SNP [dm6]	A	G	5.468e^-4	0.977	INTRON dpr
X	12332053	X_12332053_SNP [dm3] X_12438020_SNP [dm6]	A	C	5.472e^-4	0.977	INTRON Pkcdelta
3L	10042031	3L_10042031_SNP [dm3] 3L_10048931_SNP [dm6]	C	A	5.498e^-4	0.977	INTRON dpr6
2L	16178062	2L_16178062_SNP [dm3] 2L_16178062_SNP [dm6]	C	T	5.503e^-4	0.977	DOWNSTREAM CR43806 INTRON Ca-alpha1D
3L	7588795	3L_7588795_SNP [dm3] 3L_7595695_SNP [dm6]	G	A	5.504e^-4	0.977	INTRON CG33275
3R	16254515	3R_16254515_SNP [dm3] 3R_20428793_SNP [dm6]	A	C	5.517e^-4	0.977	INTRON Gfrl
2L	9099007	2L_9099007_SNP [dm3] 2L_9099007_SNP [dm6]	G	A	5.523e^-4	0.977	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
2L	12606492	2L_12606492_SNP [dm3] 2L_12606492_SNP [dm6]	A	G	5.532e^-4	0.977	INTRON nub	TF binding site BDTNP1_TFBS_da
2R	11892201	2R_11892201_SNP [dm3] 2R_16004696_SNP [dm6]	G	T	5.549e^-4	0.977	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14398943	3L_14398943_SNP [dm3] 3L_14405843_SNP [dm6]	G	A	5.554e^-4	0.977	SYNONYMOUS_CODING stwl	TF binding site BDTNP1_TFBS_dl
2R	11803549	2R_11803549_SNP [dm3] 2R_15916044_SNP [dm6]	T	A	5.555e^-4	0.977	INTRON sli EXON CR44373
3R	21032475	3R_21032475_SNP [dm3] 3R_25206753_SNP [dm6]	C	A	5.564e^-4	0.977	INTRON CG13654 & 1 other
3L	1423339	3L_1423339_SNP [dm3] 3L_1423339_SNP [dm6]	T	C	5.570e^-4	0.977	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13998140	X_13998140_SNP [dm3] X_14104107_SNP [dm6]	G	A	5.573e^-4	0.977	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26972075	3R_26972075_SNP [dm3] 3R_31146353_SNP [dm6]	G	A	5.577e^-4	0.977	INTRON Gycbeta100B
3L	11307245	3L_11307245_SNP [dm3] 3L_11314145_SNP [dm6]	A	G	5.607e^-4	0.977	DOWNSTREAM CG7573 INTERGENIC
3L	2689458	3L_2689458_SNP [dm3] 3L_2689458_SNP [dm6]	T	C	5.608e^-4	0.977	INTRON Fife
X	879151	X_879151_SNP [dm3] X_985118_SNP [dm6]	A	C	5.616e^-4	0.977	INTERGENIC
X	10320746	X_10320746_SNP [dm3] X_10426713_SNP [dm6]	T	C	5.625e^-4	0.977	INTRON CG32683
X	3975996	X_3975996_SNP [dm3] X_4081963_SNP [dm6]	A	C	5.628e^-4	0.977	INTRON CG43689
3R	15883339	3R_15883339_SNP [dm3] 3R_20057617_SNP [dm6]	C	G	5.633e^-4	0.977	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16165452	2L_16165452_SNP [dm3] 2L_16165452_SNP [dm6]	G	T	5.637e^-4	0.977	UPSTREAM Ca-alpha1D INTERGENIC
2R	7824604	2R_7824604_SNP [dm3] 2R_11937099_SNP [dm6]	A	T	5.639e^-4	0.977	INTERGENIC
3R	17613047	3R_17613047_SNP [dm3] 3R_21787325_SNP [dm6]	C	T	5.640e^-4	0.977	INTRON CASK
X	14718926	X_14718926_SNP [dm3] X_14824893_SNP [dm6]	A	G	5.649e^-4	0.977	UTR_5_PRIME rut	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	879277	X_879277_SNP [dm3] X_985244_SNP [dm6]	G	A	5.655e^-4	0.977	INTERGENIC
3L	1142391	3L_1142391_SNP [dm3] 3L_1142391_SNP [dm6]	T	C	5.664e^-4	0.977	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	19587673	2L_19587673_DEL [dm3] 2L_19587673_DEL [dm6]	TGTT	T	5.666e^-4	0.977	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17942740	2R_17942740_SNP [dm3] 2R_22055235_SNP [dm6]	T	G	5.668e^-4	0.977	INTERGENIC
2R	17943794	2R_17943794_SNP [dm3] 2R_22056289_SNP [dm6]	C	G	5.668e^-4	0.977	DOWNSTREAM CG13500 INTERGENIC
2R	17943915	2R_17943915_SNP [dm3] 2R_22056410_SNP [dm6]	C	T	5.668e^-4	0.977	DOWNSTREAM CG13500 INTERGENIC
2R	17943934	2R_17943934_SNP [dm3] 2R_22056429_SNP [dm6]	C	T	5.668e^-4	0.977	DOWNSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17943960	2R_17943960_SNP [dm3] 2R_22056455_SNP [dm6]	A	G	5.668e^-4	0.977	DOWNSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13125904	2L_13125904_SNP [dm3] 2L_13125904_SNP [dm6]	G	C	5.668e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11969958	2L_11969958_SNP [dm3] 2L_11969958_SNP [dm6]	T	G	5.672e^-4	0.977	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20284775	3R_20284775_SNP [dm3] 3R_24459053_SNP [dm6]	G	A	5.673e^-4	0.977	INTERGENIC
2L	11827248	2L_11827248_SNP [dm3] 2L_11827248_SNP [dm6]	A	G	5.687e^-4	0.977	UTR_3_PRIME esc INTRON Pde1c
3R	14539128	3R_14539128_SNP [dm3] 3R_18713406_SNP [dm6]	G	A	5.689e^-4	0.977	SYNONYMOUS_CODING VAChT INTRON Cha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10146301	3L_10146301_SNP [dm3] 3L_10153201_SNP [dm6]	A	C	5.699e^-4	0.977	DOWNSTREAM CG8072 INTRON dpr10
2L	20091675	2L_20091675_SNP [dm3] 2L_20091675_SNP [dm6]	C	T	5.701e^-4	0.977	UTR_5_PRIME CG10721 UPSTREAM CG10747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
X	816451	X_816451_SNP [dm3] X_922418_SNP [dm6]	A	T	5.710e^-4	0.977	DOWNSTREAM CG3711 INTRON CG43867
X	13996331	X_13996331_SNP [dm3] X_14102298_SNP [dm6]	C	G	5.716e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4760281	X_4760281_SNP [dm3] X_4866248_SNP [dm6]	G	A	5.718e^-4	0.977	INTRON CG42594
3L	2469911	3L_2469911_SNP [dm3] 3L_2469911_SNP [dm6]	T	G	5.719e^-4	0.977	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9453587	X_9453587_SNP [dm3] X_9559554_SNP [dm6]	C	T	5.722e^-4	0.977	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_sens
2L	6460089	2L_6460089_SNP [dm3] 2L_6460089_SNP [dm6]	G	C	5.725e^-4	0.977	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12623248	2R_12623248_SNP [dm3] 2R_16735743_SNP [dm6]	G	A	5.725e^-4	0.977	INTERGENIC
2R	3468516	2R_3468516_SNP [dm3] 2R_7581011_SNP [dm6]	G	C	5.727e^-4	0.977	NON_SYNONYMOUS_CODING blow DOWNSTREAM Vps13	TF binding site mE1_TFBS_cad
3R	14626076	3R_14626076_SNP [dm3] 3R_18800354_SNP [dm6]	C	T	5.731e^-4	0.977	UTR_3_PRIME CG18208
2L	6273509	2L_6273509_SNP [dm3] 2L_6273509_SNP [dm6]	C	A	5.732e^-4	0.977	INTRON Ddr
3L	9295659	3L_9295659_SNP [dm3] 3L_9302559_SNP [dm6]	G	A	5.751e^-4	0.977	INTERGENIC
3L	8361650	3L_8361650_SNP [dm3] 3L_8368550_SNP [dm6]	T	G	5.758e^-4	0.977	INTERGENIC
X	10873695	X_10873695_SNP [dm3] X_10979662_SNP [dm6]	T	G	5.760e^-4	0.977	INTRON CG42339
2L	9964199	2L_9964199_MNP [dm3] 2L_9964199_MNP [dm6]	ACT	TTA	5.767e^-4	0.977	UTR_3_PRIME Dref UPSTREAM CG5850 DOWNSTREAM Dref
X	14286591	X_14286591_SNP [dm3] X_14392558_SNP [dm6]	T	C	5.773e^-4	0.977	INTRON dpr8
3L	10373744	3L_10373744_SNP [dm3] 3L_10380644_SNP [dm6]	T	G	5.775e^-4	0.977	INTERGENIC
3R	15951806	3R_15951806_SNP [dm3] 3R_20126084_SNP [dm6]	T	C	5.785e^-4	0.977	INTERGENIC
X	16800014	X_16800014_SNP [dm3] X_16905981_SNP [dm6]	C	G	5.796e^-4	0.977	EXON CR44754
3R	25584752	3R_25584752_SNP [dm3] 3R_29759030_SNP [dm6]	A	T	5.796e^-4	0.977	EXON CR44953	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3449100	2R_3449100_SNP [dm3] 2R_7561595_SNP [dm6]	A	T	5.801e^-4	0.977	UTR_3_PRIME Corin
3L	9937478	3L_9937478_MNP [dm3] 3L_9944378_MNP [dm6]	CTG	GAT	5.811e^-4	0.977	INTRON CG34356
3L	9937486	3L_9937486_SNP [dm3] 3L_9944386_SNP [dm6]	C	G	5.811e^-4	0.977	INTRON CG34356
X	11547052	X_11547052_DEL [dm3] X_11653019_DEL [dm6]	AA	A	5.821e^-4	0.977	INTRON Ptp10D
3R	25528976	3R_25528976_SNP [dm3] 3R_29703254_SNP [dm6]	T	C	5.822e^-4	0.977	INTERGENIC
X	9915465	X_9915465_INS [dm3] X_10021432_INS [dm6]	T	TGTAT	5.822e^-4	0.977	INTRON Cht6
3L	14563172	3L_14563172_SNP [dm3] 3L_14570072_SNP [dm6]	T	A	5.826e^-4	0.977	INTERGENIC
2L	11969995	2L_11969995_SNP [dm3] 2L_11969995_SNP [dm6]	T	G	5.856e^-4	0.977	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15623420	2L_15623420_SNP [dm3] 2L_15623420_SNP [dm6]	G	C	5.862e^-4	0.977	NON_SYNONYMOUS_CODING Or35a
3L	9292368	3L_9292368_SNP [dm3] 3L_9299268_SNP [dm6]	T	A	5.865e^-4	0.977	INTERGENIC
2L	8999898	2L_8999898_SNP [dm3] 2L_8999898_SNP [dm6]	C	A	5.886e^-4	0.977	DOWNSTREAM Try29F INTERGENIC
3R	14753644	3R_14753644_SNP [dm3] 3R_18927922_SNP [dm6]	T	C	5.889e^-4	0.977	DOWNSTREAM Xrp1 INTRON Mpc1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13259169	X_13259169_SNP [dm3] X_13365136_SNP [dm6]	T	C	5.890e^-4	0.977	SPLICE_SITE_REGION Syt12 INTRON Syt12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10425821	2R_10425821_SNP [dm3] 2R_14538316_SNP [dm6]	A	G	5.899e^-4	0.977	INTRON ttv
3R	4176738	3R_4176738_SNP [dm3] 3R_8351016_SNP [dm6]	G	A	5.905e^-4	0.977	NON_SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
2R	12128416	2R_12128416_SNP [dm3] 2R_16240911_SNP [dm6]	C	T	5.915e^-4	0.977	UPSTREAM krimp DOWNSTREAM CG15708 INTERGENIC
2L	17854711	2L_17854711_SNP [dm3] 2L_17854711_SNP [dm6]	A	G	5.921e^-4	0.977	INTRON CadN2

By genomic position
Variant impact
Gene name

Vial phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results