DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.052e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.005063

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.121	0.0284

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4097 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10308332	X_10308332_SNP [dm3] X_10414299_SNP [dm6]	A	T	1.318e^-8	0.024	INTRON CG32683
3R	15603210	3R_15603210_SNP [dm3] 3R_19777488_SNP [dm6]	C	T	2.588e^-8	0.024	UPSTREAM CG11659 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1595841	2L_1595841_SNP [dm3] 2L_1595841_SNP [dm6]	A	T	7.733e^-8	0.038	INTRON haf & 1 other
X	15329139	X_15329139_SNP [dm3] X_15435106_SNP [dm6]	A	T	8.448e^-8	0.038	INTRON Cngl
3R	21681446	3R_21681446_SNP [dm3] 3R_25855724_SNP [dm6]	T	A	1.262e^-7	0.038	UPSTREAM CG5890 INTERGENIC
2L	1623860	2L_1623860_SNP [dm3] 2L_1623860_SNP [dm6]	C	T	1.280e^-7	0.038	UPSTREAM CR44603 EXON CR44603
3R	9698043	3R_9698043_SNP [dm3] 3R_13872321_SNP [dm6]	A	C	1.508e^-7	0.038	INTRON E5
3R	13611125	3R_13611125_SNP [dm3] 3R_17785403_SNP [dm6]	A	G	1.608e^-7	0.038	INTRON CG43102
X	2934465	X_2934465_SNP [dm3] X_3040432_SNP [dm6]	G	T	2.190e^-7	0.04	INTRON kirre
2L	5864705	2L_5864705_SNP [dm3] 2L_5864705_SNP [dm6]	C	A	2.218e^-7	0.04	INTRON rau	TF binding site BDTNP1_TFBS_twi
3L	4468495	3L_4468495_SNP [dm3] 3L_4468495_SNP [dm6]	G	A	2.462e^-7	0.04	INTERGENIC
2L	3187401	2L_3187401_SNP [dm3] 2L_3187401_SNP [dm6]	G	C	2.679e^-7	0.04	INTRON CG34393
2L	273776	2L_273776_SNP [dm3] 2L_273776_SNP [dm6]	T	A	3.025e^-7	0.04	UPSTREAM CG11555 & 1 other DOWNSTREAM CG17078 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15589538	3R_15589538_SNP [dm3] 3R_19763816_SNP [dm6]	A	C	3.127e^-7	0.04	INTRON GluClalpha
2L	1348713	2L_1348713_SNP [dm3] 2L_1348713_SNP [dm6]	G	T	3.513e^-7	0.04	INTERGENIC
3L	12152193	3L_12152193_SNP [dm3] 3L_12159093_SNP [dm6]	C	A	3.606e^-7	0.04	INTRON CG9760
2L	11419135	2L_11419135_SNP [dm3] 2L_11419135_SNP [dm6]	G	A	3.663e^-7	0.04	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1331991	2L_1331991_SNP [dm3] 2L_1331991_SNP [dm6]	T	G	4.124e^-7	0.043	INTERGENIC
3L	4472584	3L_4472584_SNP [dm3] 3L_4472584_SNP [dm6]	A	T	5.320e^-7	0.052	UPSTREAM CG11349 DOWNSTREAM CG32248 INTERGENIC
2L	16613556	2L_16613556_SNP [dm3] 2L_16613556_SNP [dm6]	C	T	5.702e^-7	0.053	INTRON CG42389
2L	10581338	2L_10581338_SNP [dm3] 2L_10581338_SNP [dm6]	T	G	6.027e^-7	0.054	SYNONYMOUS_CODING CG34161 INTRON Trim9
2L	12840652	2L_12840652_SNP [dm3] 2L_12840652_SNP [dm6]	A	C	6.514e^-7	0.056	UPSTREAM CR44970 & 1 other INTERGENIC
2R	12660810	2R_12660810_SNP [dm3] 2R_16773305_SNP [dm6]	G	A	7.959e^-7	0.061	SYNONYMOUS_CODING Sod2 UPSTREAM unc-104 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1678458	2L_1678458_SNP [dm3] 2L_1678458_SNP [dm6]	A	C	7.989e^-7	0.061	INTRON chinmo
2L	1612878	2L_1612878_SNP [dm3] 2L_1612878_SNP [dm6]	G	A	8.808e^-7	0.061	SYNONYMOUS_CODING RFeSP DOWNSTREAM CG14352	TF binding site mE1_TFBS_chinmo
2L	928340	2L_928340_SNP [dm3] 2L_928340_SNP [dm6]	C	G	9.313e^-7	0.061	INTRON CG4341
2L	1622955	2L_1622955_SNP [dm3] 2L_1622955_SNP [dm6]	T	C	9.744e^-7	0.061	EXON CR44603
3L	4464319	3L_4464319_SNP [dm3] 3L_4464319_SNP [dm6]	G	A	1.008e^-6	0.061	UPSTREAM CG15024 DOWNSTREAM CG32241 INTERGENIC
2L	10477623	2L_10477623_SNP [dm3] 2L_10477623_SNP [dm6]	A	G	1.057e^-6	0.061	INTRON RluA-2	TF binding site mE1_TFBS_ttk
2L	1331968	2L_1331968_SNP [dm3] 2L_1331968_SNP [dm6]	G	A	1.058e^-6	0.061	INTERGENIC
3R	9699245	3R_9699245_SNP [dm3] 3R_13873523_SNP [dm6]	C	T	1.065e^-6	0.061	SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15380247	3R_15380247_SNP [dm3] 3R_19554525_SNP [dm6]	C	T	1.070e^-6	0.061	INTRON Dys	TF binding site mE1_TFBS_inv
3L	16701992	3L_16701992_SNP [dm3] 3L_16708892_SNP [dm6]	T	A	1.113e^-6	0.061	INTRON Lasp & 1 other
3L	16702013	3L_16702013_SNP [dm3] 3L_16708913_SNP [dm6]	G	A	1.113e^-6	0.061	INTRON Lasp & 1 other
2L	10577169	2L_10577169_SNP [dm3] 2L_10577169_SNP [dm6]	G	A	1.184e^-6	0.062	SYNONYMOUS_CODING w-cup INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6018574	2L_6018574_SNP [dm3] 2L_6018574_SNP [dm6]	A	C	1.196e^-6	0.062	INTRON H2.0	TF binding site mE1_TFBS_cad
2L	923759	2L_923759_SNP [dm3] 2L_923759_SNP [dm6]	G	T	1.254e^-6	0.063	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	16700326	3L_16700326_SNP [dm3] 3L_16707226_SNP [dm6]	A	G	1.303e^-6	0.063	DOWNSTREAM CG9692 INTRON Lasp & 1 other
2L	3186924	2L_3186924_SNP [dm3] 2L_3186924_SNP [dm6]	T	A	1.315e^-6	0.063	INTRON CG34393
2L	413813	2L_413813_SNP [dm3] 2L_413813_SNP [dm6]	G	A	1.383e^-6	0.063	UPSTREAM AP-2alpha INTRON AP-2alpha	TF binding site mE1_TFBS_GATAe mE1_TFBS_sens mE1_TFBS_Trl
2L	278396	2L_278396_SNP [dm3] 2L_278396_SNP [dm6]	G	A	1.401e^-6	0.063	UPSTREAM CG17078 INTRON smo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	413285	2L_413285_SNP [dm3] 2L_413285_SNP [dm6]	G	A	1.411e^-6	0.063	UPSTREAM AP-2alpha INTRON AP-2alpha
2R	19559685	2R_19559685_SNP [dm3] 2R_23672162_SNP [dm6]	C	A	1.438e^-6	0.063	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	1403981	3R_1403981_SNP [dm3] 3R_5578259_SNP [dm6]	C	A	1.474e^-6	0.063	NON_SYNONYMOUS_CODING CRMP UTR_3_PRIME CRMP
3R	22318053	3R_22318053_SNP [dm3] 3R_26492331_SNP [dm6]	C	T	1.540e^-6	0.064	INTRON plum
2L	1689418	2L_1689418_SNP [dm3] 2L_1689418_SNP [dm6]	G	T	1.622e^-6	0.064	INTRON chinmo	TF binding site mE1_TFBS_HSA
2L	270786	2L_270786_SNP [dm3] 2L_270786_SNP [dm6]	C	T	1.646e^-6	0.064	SYNONYMOUS_CODING CG3345 INTRON CG3645	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	446015	2L_446015_SNP [dm3] 2L_446015_SNP [dm6]	G	A	1.649e^-6	0.064	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	448307	2L_448307_SNP [dm3] 2L_448307_SNP [dm6]	C	T	1.774e^-6	0.068	UTR_3_PRIME ex & 1 other DOWNSTREAM crq
X	6121273	X_6121273_SNP [dm3] X_6227240_SNP [dm6]	G	A	2.012e^-6	0.074	SYNONYMOUS_CODING CG14446	TF binding site mE1_TFBS_chinmo
2R	4425838	2R_4425838_SNP [dm3] 2R_8538333_SNP [dm6]	G	C	2.021e^-6	0.074	INTERGENIC
3R	16538672	3R_16538672_SNP [dm3] 3R_20712950_SNP [dm6]	A	C	2.071e^-6	0.074	INTRON Oamb
3R	16538673	3R_16538673_SNP [dm3] 3R_20712951_SNP [dm6]	G	C	2.125e^-6	0.074	INTRON Oamb
2L	6163845	2L_6163845_SNP [dm3] 2L_6163845_SNP [dm6]	G	A	2.128e^-6	0.074	INTERGENIC
2L	11528370	2L_11528370_SNP [dm3] 2L_11528370_SNP [dm6]	A	G	2.238e^-6	0.076	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
2L	12857072	2L_12857072_SNP [dm3] 2L_12857072_SNP [dm6]	T	G	2.346e^-6	0.077	INTERGENIC
2L	1371388	2L_1371388_SNP [dm3] 2L_1371388_SNP [dm6]	C	A	2.414e^-6	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	21679286	3R_21679286_SNP [dm3] 3R_25853564_SNP [dm6]	G	A	2.426e^-6	0.077	SYNONYMOUS_CODING CG5886
3R	16538643	3R_16538643_SNP [dm3] 3R_20712921_SNP [dm6]	C	A	2.434e^-6	0.077	INTRON Oamb
X	2934468	X_2934468_SNP [dm3] X_3040435_SNP [dm6]	A	C	2.629e^-6	0.082	INTRON kirre
2L	16613574	2L_16613574_SNP [dm3] 2L_16613574_SNP [dm6]	G	A	2.695e^-6	0.082	INTRON CG42389
3R	16538659	3R_16538659_SNP [dm3] 3R_20712937_SNP [dm6]	A	G	2.733e^-6	0.082	INTRON Oamb
3R	15589867	3R_15589867_SNP [dm3] 3R_19764145_SNP [dm6]	A	G	2.764e^-6	0.082	INTRON GluClalpha
2L	11476672	2L_11476672_SNP [dm3] 2L_11476672_SNP [dm6]	T	A	2.851e^-6	0.082	INTERGENIC
2L	15788638	2L_15788638_SNP [dm3] 2L_15788638_SNP [dm6]	G	A	2.876e^-6	0.082	NON_SYNONYMOUS_CODING CG18109	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26369100	3R_26369100_SNP [dm3] 3R_30543378_SNP [dm6]	C	T	2.899e^-6	0.082	INTRON tmod	TF binding site BDTNP1_TFBS_twi
3R	14542130	3R_14542130_SNP [dm3] 3R_18716408_SNP [dm6]	T	A	2.962e^-6	0.083	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_kn
3R	21725180	3R_21725180_SNP [dm3] 3R_25899458_SNP [dm6]	C	T	3.311e^-6	0.091	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091
2L	1693575	2L_1693575_SNP [dm3] 2L_1693575_SNP [dm6]	G	A	3.383e^-6	0.092	INTRON chinmo
2L	21370448	2L_21370448_SNP [dm3] 2L_21370448_SNP [dm6]	G	A	3.542e^-6	0.094	UPSTREAM Gr39b & 1 other INTERGENIC
3R	16538825	3R_16538825_SNP [dm3] 3R_20713103_SNP [dm6]	G	A	3.575e^-6	0.094	INTRON Oamb
2R	19632178	2R_19632178_SNP [dm3] 2R_23744655_SNP [dm6]	G	T	3.635e^-6	0.095	INTRON egl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	17792977	2L_17792977_SNP [dm3] 2L_17792977_SNP [dm6]	A	C	3.825e^-6	0.097	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16538759	3R_16538759_SNP [dm3] 3R_20713037_SNP [dm6]	A	C	3.829e^-6	0.097	INTRON Oamb
3R	27198143	3R_27198143_SNP [dm3] 3R_31372421_SNP [dm6]	T	A	3.864e^-6	0.097	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
2L	19403038	2L_19403038_SNP [dm3] 2L_19403038_SNP [dm6]	C	T	4.040e^-6	0.099	DOWNSTREAM Pax & 1 other INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_Kr
2L	1318198	2L_1318198_SNP [dm3] 2L_1318198_SNP [dm6]	T	C	4.065e^-6	0.099	INTERGENIC
3L	12152198	3L_12152198_SNP [dm3] 3L_12159098_SNP [dm6]	A	T	4.179e^-6	0.1	INTRON CG9760
3R	878790	3R_878790_SNP [dm3] 3R_5053068_SNP [dm6]	A	T	4.230e^-6	0.1	DOWNSTREAM CR45588 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10308463	X_10308463_SNP [dm3] X_10414430_SNP [dm6]	G	C	4.506e^-6	0.105	INTRON CG32683
2L	6163779	2L_6163779_SNP [dm3] 2L_6163779_SNP [dm6]	A	G	4.555e^-6	0.105	INTERGENIC
3R	16538796	3R_16538796_DEL [dm3] 3R_20713074_DEL [dm6]	CTAAGT	G	4.576e^-6	0.105	INTRON Oamb
2L	1332056	2L_1332056_SNP [dm3] 2L_1332056_SNP [dm6]	A	T	4.789e^-6	0.108	INTERGENIC
3R	9770502	3R_9770502_SNP [dm3] 3R_13944780_SNP [dm6]	G	A	4.938e^-6	0.11	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad
3R	17648293	3R_17648293_SNP [dm3] 3R_21822571_SNP [dm6]	A	T	5.190e^-6	0.114	UTR_5_PRIME CASK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15266446	3L_15266446_SNP [dm3] 3L_15273346_SNP [dm6]	C	A	5.258e^-6	0.114	INTERGENIC
3R	16538995	3R_16538995_SNP [dm3] 3R_20713273_SNP [dm6]	C	A	5.344e^-6	0.114	INTRON Oamb
3R	23887952	3R_23887952_SNP [dm3] 3R_28062230_SNP [dm6]	T	C	5.396e^-6	0.114	INTRON CG34362
3L	16698143	3L_16698143_SNP [dm3] 3L_16705043_SNP [dm6]	C	T	5.424e^-6	0.114	SYNONYMOUS_CODING CG9692 UTR_5_PRIME CG9692 INTRON Lasp & 1 other
2L	16802237	2L_16802237_SNP [dm3] 2L_16802237_SNP [dm6]	G	A	5.468e^-6	0.114	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
3R	16538766	3R_16538766_SNP [dm3] 3R_20713044_SNP [dm6]	A	T	5.570e^-6	0.115	INTRON Oamb
2L	924891	2L_924891_SNP [dm3] 2L_924891_SNP [dm6]	T	A	6.158e^-6	0.119	INTRON CG4341
2L	924892	2L_924892_SNP [dm3] 2L_924892_SNP [dm6]	G	A	6.183e^-6	0.119	INTRON CG4341
3R	22450092	3R_22450092_SNP [dm3] 3R_26624370_SNP [dm6]	T	C	6.208e^-6	0.119	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
3L	15266421	3L_15266421_SNP [dm3] 3L_15273321_SNP [dm6]	C	A	6.262e^-6	0.119	INTERGENIC
2R	1687881	2R_1687881_SNP [dm3] 2R_5800376_SNP [dm6]	A	G	6.328e^-6	0.119	INTERGENIC
3L	16701144	3L_16701144_SNP [dm3] 3L_16708044_SNP [dm6]	A	G	6.352e^-6	0.119	INTRON Lasp & 1 other
3R	14857031	3R_14857031_SNP [dm3] 3R_19031309_SNP [dm6]	C	A	6.399e^-6	0.119	UPSTREAM CG6013 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12036495	3L_12036495_SNP [dm3] 3L_12043395_SNP [dm6]	C	A	6.582e^-6	0.119	SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2R	4420823	2R_4420823_SNP [dm3] 2R_8533318_SNP [dm6]	C	G	6.670e^-6	0.119	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10582328	2L_10582328_SNP [dm3] 2L_10582328_SNP [dm6]	G	A	6.768e^-6	0.119	UPSTREAM CG34161 INTRON Trim9
X	6120991	X_6120991_SNP [dm3] X_6226958_SNP [dm6]	A	G	6.850e^-6	0.119	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1601141	2L_1601141_SNP [dm3] 2L_1601141_SNP [dm6]	T	C	6.936e^-6	0.119	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15380238	3R_15380238_SNP [dm3] 3R_19554516_SNP [dm6]	C	T	7.015e^-6	0.119	INTRON Dys	TF binding site mE1_TFBS_inv
2L	4376676	2L_4376676_SNP [dm3] 2L_4376676_SNP [dm6]	C	G	7.028e^-6	0.119	INTRON Traf4	TF binding site mE1_TFBS_cad
2L	882933	2L_882933_SNP [dm3] 2L_882933_SNP [dm6]	G	A	7.050e^-6	0.119	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4406720	2L_4406720_SNP [dm3] 2L_4406720_SNP [dm6]	C	A	7.112e^-6	0.119	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	15601043	3R_15601043_SNP [dm3] 3R_19775321_SNP [dm6]	A	T	7.123e^-6	0.119	DOWNSTREAM CG11659 & 1 other INTERGENIC
2L	11528253	2L_11528253_SNP [dm3] 2L_11528253_SNP [dm6]	A	C	7.181e^-6	0.119	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
2L	1701683	2L_1701683_SNP [dm3] 2L_1701683_SNP [dm6]	T	C	7.209e^-6	0.119	UTR_3_PRIME chinmo
2R	9215698	2R_9215698_SNP [dm3] 2R_13328193_SNP [dm6]	A	C	7.211e^-6	0.119	INTERGENIC
2L	2931502	2L_2931502_SNP [dm3] 2L_2931502_SNP [dm6]	G	T	7.239e^-6	0.119	INTRON lilli
2R	4426542	2R_4426542_SNP [dm3] 2R_8539037_SNP [dm6]	C	T	7.275e^-6	0.119	INTERGENIC
3R	17418243	3R_17418243_SNP [dm3] 3R_21592521_SNP [dm6]	A	G	7.307e^-6	0.119	UPSTREAM InR INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16538764	3R_16538764_SNP [dm3] 3R_20713042_SNP [dm6]	C	G	7.474e^-6	0.119	INTRON Oamb
2L	19775630	2L_19775630_INS [dm3] 2L_19775630_INS [dm6]	A	AA	7.493e^-6	0.119	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
2R	16136053	2R_16136053_SNP [dm3] 2R_20248548_SNP [dm6]	G	A	7.495e^-6	0.119	SYNONYMOUS_CODING CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
3L	16700705	3L_16700705_DEL [dm3] 3L_16707605_DEL [dm6]	AGGCA	A	7.630e^-6	0.119	INTRON Lasp & 1 other
2L	4386239	2L_4386239_SNP [dm3] 2L_4386239_SNP [dm6]	A	G	7.688e^-6	0.119	UTR_3_PRIME Psf2 UPSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	955629	2L_955629_INS [dm3] 2L_955629_INS [dm6]	G	GGATG	7.689e^-6	0.119	INTRON CG4341
3R	22450088	3R_22450088_SNP [dm3] 3R_26624366_SNP [dm6]	T	C	7.696e^-6	0.119	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2L	12140361	2L_12140361_INS [dm3] 2L_12140361_INS [dm6]	T	TGAAAATTAACAA...	7.813e^-6	0.12	UTR_3_PRIME Gr33a
3L	8172829	3L_8172829_SNP [dm3] 3L_8179729_SNP [dm6]	C	T	7.997e^-6	0.122	INTRON mthl7
3R	15221515	3R_15221515_SNP [dm3] 3R_19395793_SNP [dm6]	T	A	8.280e^-6	0.125	DOWNSTREAM CG3739 INTRON Ino80
2R	1666968	2R_1666968_SNP [dm3] 2R_5779463_SNP [dm6]	C	T	8.370e^-6	0.126	INTRON ZnT41F
2L	410595	2L_410595_SNP [dm3] 2L_410595_SNP [dm6]	G	A	8.438e^-6	0.126	SYNONYMOUS_CODING AP-2alpha	TF binding site mE1_TFBS_cad
3R	17418297	3R_17418297_SNP [dm3] 3R_21592575_SNP [dm6]	G	A	8.578e^-6	0.126	SPLICE_SITE_REGION CR43653 UPSTREAM InR INTRON InR EXON CR43653	TF binding site mE1_TFBS_Trl
2L	1356172	2L_1356172_SNP [dm3] 2L_1356172_SNP [dm6]	G	T	8.665e^-6	0.126	UPSTREAM CG5565 INTERGENIC
2R	9087723	2R_9087723_SNP [dm3] 2R_13200218_SNP [dm6]	T	A	8.683e^-6	0.126	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1630027	2L_1630027_SNP [dm3] 2L_1630027_SNP [dm6]	T	G	8.753e^-6	0.126	INTERGENIC
2L	4375411	2L_4375411_SNP [dm3] 2L_4375411_SNP [dm6]	A	C	8.864e^-6	0.127	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22960308	3R_22960308_INS [dm3] 3R_27134586_INS [dm6]	A	ATTGTA	8.920e^-6	0.127	INTRON CG6051
2L	1671342	2L_1671342_SNP [dm3] 2L_1671342_SNP [dm6]	T	G	8.996e^-6	0.127	INTRON chinmo
2L	885916	2L_885916_SNP [dm3] 2L_885916_SNP [dm6]	A	G	9.062e^-6	0.127	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21167694	3R_21167694_SNP [dm3] 3R_25341972_SNP [dm6]	G	A	9.237e^-6	0.127	NON_SYNONYMOUS_CODING rha
2L	10576988	2L_10576988_SNP [dm3] 2L_10576988_SNP [dm6]	T	C	9.247e^-6	0.127	NON_SYNONYMOUS_CODING w-cup INTRON Trim9	TF binding site mE1_TFBS_sens
3R	15589830	3R_15589830_SNP [dm3] 3R_19764108_SNP [dm6]	A	C	9.410e^-6	0.129	INTRON GluClalpha
2L	4379592	2L_4379592_SNP [dm3] 2L_4379592_SNP [dm6]	C	T	9.500e^-6	0.129	SYNONYMOUS_CODING Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1246943	2L_1246943_SNP [dm3] 2L_1246943_SNP [dm6]	C	T	9.590e^-6	0.129	INTERGENIC
2L	4401562	2L_4401562_SNP [dm3] 2L_4401562_SNP [dm6]	G	T	9.595e^-6	0.129	NON_SYNONYMOUS_CODING CG33003	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26377531	3R_26377531_SNP [dm3] 3R_30551809_SNP [dm6]	C	G	9.693e^-6	0.129	INTRON tmod
3R	17418259	3R_17418259_SNP [dm3] 3R_21592537_SNP [dm6]	G	A	1.021e^-5	0.132	UPSTREAM InR INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4417559	2L_4417559_SNP [dm3] 2L_4417559_SNP [dm6]	C	T	1.023e^-5	0.132	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	10716665	2L_10716665_SNP [dm3] 2L_10716665_SNP [dm6]	T	C	1.038e^-5	0.132	INTERGENIC
2R	13890885	2R_13890885_SNP [dm3] 2R_18003380_SNP [dm6]	A	G	1.044e^-5	0.132	INTRON dpr13
2L	2898833	2L_2898833_SNP [dm3] 2L_2898833_SNP [dm6]	A	G	1.049e^-5	0.132	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	21675426	3R_21675426_DEL [dm3] 3R_25849704_DEL [dm6]	GTATG	G	1.050e^-5	0.132	DOWNSTREAM CG14545 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3781756	3L_3781756_SNP [dm3] 3L_3781756_SNP [dm6]	C	A	1.052e^-5	0.132	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18968555	2L_18968555_SNP [dm3] 2L_18968555_SNP [dm6]	C	T	1.052e^-5	0.132	UTR_5_PRIME Nak UPSTREAM Tango6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	882928	2L_882928_SNP [dm3] 2L_882928_SNP [dm6]	T	A	1.077e^-5	0.135	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10414351	2L_10414351_SNP [dm3] 2L_10414351_SNP [dm6]	A	T	1.083e^-5	0.135	UPSTREAM CG5355 & 1 other INTRON Klp31E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	12524674	2L_12524674_DEL [dm3] 2L_12524674_DEL [dm6]	GAAAACGC	CT	1.090e^-5	0.135	INTRON bun
2R	18596000	2R_18596000_SNP [dm3] 2R_22708495_SNP [dm6]	C	T	1.134e^-5	0.139	DOWNSTREAM Obp58d INTRON CG30275 EXON CR43735
2L	12531012	2L_12531012_SNP [dm3] 2L_12531012_SNP [dm6]	G	T	1.143e^-5	0.139	INTRON bun
2L	11372788	2L_11372788_SNP [dm3] 2L_11372788_SNP [dm6]	A	T	1.159e^-5	0.14	INTRON salr	TF binding site mE1_TFBS_chinmo
3R	15601001	3R_15601001_SNP [dm3] 3R_19775279_SNP [dm6]	C	T	1.188e^-5	0.142	DOWNSTREAM CG11659 & 1 other INTERGENIC
2L	7854262	2L_7854262_SNP [dm3] 2L_7854262_SNP [dm6]	C	T	1.193e^-5	0.142	INTRON CG14535
2L	3770233	2L_3770233_SNP [dm3] 2L_3770233_SNP [dm6]	G	A	1.202e^-5	0.142	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	4402260	2L_4402260_SNP [dm3] 2L_4402260_SNP [dm6]	G	A	1.208e^-5	0.142	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1318220	2L_1318220_SNP [dm3] 2L_1318220_SNP [dm6]	C	T	1.221e^-5	0.143	INTERGENIC
3L	12583796	3L_12583796_SNP [dm3] 3L_12590696_SNP [dm6]	G	A	1.238e^-5	0.143	INTRON ara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26376586	3R_26376586_MNP [dm3] 3R_30550864_MNP [dm6]	ACA	TTT	1.240e^-5	0.143	INTRON tmod
3R	17073095	3R_17073095_SNP [dm3] 3R_21247373_SNP [dm6]	A	G	1.243e^-5	0.143	UTR_5_PRIME ETHR
2L	2931511	2L_2931511_SNP [dm3] 2L_2931511_SNP [dm6]	A	C	1.261e^-5	0.144	INTRON lilli
2L	922246	2L_922246_SNP [dm3] 2L_922246_SNP [dm6]	C	A	1.263e^-5	0.144	UPSTREAM CG4341 INTERGENIC
2L	4356930	2L_4356930_SNP [dm3] 2L_4356930_SNP [dm6]	G	A	1.281e^-5	0.144	INTERGENIC
2L	10557860	2L_10557860_SNP [dm3] 2L_10557860_SNP [dm6]	C	A	1.289e^-5	0.144	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20827575	3R_20827575_SNP [dm3] 3R_25001853_SNP [dm6]	A	C	1.293e^-5	0.144	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14704569	2R_14704569_SNP [dm3] 2R_18817064_SNP [dm6]	T	A	1.315e^-5	0.144	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_inv
3R	21148732	3R_21148732_SNP [dm3] 3R_25323010_SNP [dm6]	G	A	1.315e^-5	0.144	UPSTREAM CG10562 DOWNSTREAM CHKov1 INTERGENIC
3L	8172842	3L_8172842_SNP [dm3] 3L_8179742_SNP [dm6]	G	A	1.317e^-5	0.144	INTRON mthl7
3R	23886931	3R_23886931_SNP [dm3] 3R_28061209_SNP [dm6]	T	C	1.321e^-5	0.144	INTRON CG34362
2L	7455809	2L_7455809_SNP [dm3] 2L_7455809_SNP [dm6]	C	T	1.341e^-5	0.145	INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	908874	3R_908874_DEL [dm3] 3R_5083152_DEL [dm6]	GCC	T	1.348e^-5	0.145	UTR_3_PRIME corto DOWNSTREAM corto
2L	400680	2L_400680_SNP [dm3] 2L_400680_SNP [dm6]	G	A	1.355e^-5	0.145	INTRON CG4213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6672325	2R_6672325_SNP [dm3] 2R_10784820_SNP [dm6]	A	G	1.364e^-5	0.145	DOWNSTREAM CR44300 INTRON CG33144 EXON CR44299
3R	26103224	3R_26103224_SNP [dm3] 3R_30277502_SNP [dm6]	T	C	1.381e^-5	0.145	UPSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8440242	X_8440242_SNP [dm3] X_8546209_SNP [dm6]	G	T	1.381e^-5	0.145	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9947280	3L_9947280_SNP [dm3] 3L_9954180_SNP [dm6]	G	C	1.390e^-5	0.146	INTRON CG34356
2L	12840539	2L_12840539_SNP [dm3] 2L_12840539_SNP [dm6]	G	A	1.419e^-5	0.146	UPSTREAM CR44970 & 1 other INTERGENIC
2L	7455808	2L_7455808_SNP [dm3] 2L_7455808_SNP [dm6]	G	A	1.420e^-5	0.146	INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3277266	2L_3277266_SNP [dm3] 2L_3277266_SNP [dm6]	C	T	1.422e^-5	0.146	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad
2L	2098046	2L_2098046_SNP [dm3] 2L_2098046_SNP [dm6]	G	A	1.427e^-5	0.146	INTRON dpr3
3R	25321947	3R_25321947_SNP [dm3] 3R_29496225_SNP [dm6]	T	C	1.452e^-5	0.147	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	924427	2L_924427_SNP [dm3] 2L_924427_SNP [dm6]	A	G	1.462e^-5	0.147	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	11396779	2L_11396779_SNP [dm3] 2L_11396779_SNP [dm6]	T	A	1.468e^-5	0.147	INTERGENIC	regulatory region REDfly_CRMs
2R	4565547	2R_4565547_SNP [dm3] 2R_8678042_SNP [dm6]	A	C	1.468e^-5	0.147	DOWNSTREAM CG30354 INTRON Acsl
3R	908878	3R_908878_INS [dm3] 3R_5083156_INS [dm6]	G	GT	1.480e^-5	0.148	UTR_3_PRIME corto DOWNSTREAM corto
2L	2827498	2L_2827498_SNP [dm3] 2L_2827498_SNP [dm6]	A	T	1.499e^-5	0.149	INTRON Duox
3R	15602988	3R_15602988_SNP [dm3] 3R_19777266_SNP [dm6]	A	T	1.517e^-5	0.15	UTR_5_PRIME CG11659
2L	4401177	2L_4401177_SNP [dm3] 2L_4401177_SNP [dm6]	T	C	1.578e^-5	0.153	NON_SYNONYMOUS_CODING CG33003 DOWNSTREAM l_2_k05819	TF binding site mE1_TFBS_cad
2L	1612610	2L_1612610_SNP [dm3] 2L_1612610_SNP [dm6]	T	A	1.578e^-5	0.153	UTR_3_PRIME RFeSP DOWNSTREAM RFeSP & 1 other
2L	12790068	2L_12790068_SNP [dm3] 2L_12790068_SNP [dm6]	A	G	1.580e^-5	0.153	INTERGENIC
3L	1111393	3L_1111393_SNP [dm3] 3L_1111393_SNP [dm6]	G	A	1.588e^-5	0.153	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10388577	3R_10388577_SNP [dm3] 3R_14562855_SNP [dm6]	T	A	1.595e^-5	0.153	DOWNSTREAM CG14851 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15592540	3R_15592540_SNP [dm3] 3R_19766818_SNP [dm6]	C	T	1.626e^-5	0.153	INTRON GluClalpha
2L	18243136	2L_18243136_SNP [dm3] 2L_18243136_SNP [dm6]	G	A	1.635e^-5	0.153	INTRON CG42750
2L	10580084	2L_10580084_SNP [dm3] 2L_10580084_SNP [dm6]	A	G	1.651e^-5	0.153	SYNONYMOUS_CODING CG34160 DOWNSTREAM CG34161 INTRON Trim9
2L	10582360	2L_10582360_SNP [dm3] 2L_10582360_SNP [dm6]	G	T	1.653e^-5	0.153	UPSTREAM CG34161 INTRON Trim9
2L	4417259	2L_4417259_SNP [dm3] 2L_4417259_SNP [dm6]	G	T	1.655e^-5	0.153	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15600984	3R_15600984_SNP [dm3] 3R_19775262_SNP [dm6]	G	C	1.658e^-5	0.153	DOWNSTREAM CG11659 & 1 other INTERGENIC
2R	17761830	2R_17761830_SNP [dm3] 2R_21874325_SNP [dm6]	A	T	1.665e^-5	0.153	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9811371	2L_9811371_SNP [dm3] 2L_9811371_SNP [dm6]	C	T	1.669e^-5	0.153	INTRON nAChRalpha6
2L	16294920	2L_16294920_SNP [dm3] 2L_16294920_SNP [dm6]	A	C	1.673e^-5	0.153	SYNONYMOUS_CODING Cyp303a1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14759897	2R_14759897_SNP [dm3] 2R_18872392_SNP [dm6]	C	T	1.675e^-5	0.153	INTERGENIC
2R	1691443	2R_1691443_SNP [dm3] 2R_5803938_SNP [dm6]	C	A	1.700e^-5	0.155	UPSTREAM dpr12 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	21159877	3R_21159877_SNP [dm3] 3R_25334155_SNP [dm6]	C	T	1.720e^-5	0.156	SYNONYMOUS_CODING CG10669	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10389014	3R_10389014_SNP [dm3] 3R_14563292_SNP [dm6]	G	A	1.749e^-5	0.157	DOWNSTREAM CG14851 INTERGENIC	insulator Insulator_Class_II.mE01
2L	1332049	2L_1332049_SNP [dm3] 2L_1332049_SNP [dm6]	T	A	1.751e^-5	0.157	INTERGENIC
2L	1318180	2L_1318180_SNP [dm3] 2L_1318180_SNP [dm6]	A	G	1.761e^-5	0.157	INTERGENIC
3R	15602984	3R_15602984_DEL [dm3] 3R_19777262_DEL [dm6]	AAA	A	1.761e^-5	0.157	UTR_5_PRIME CG11659
2L	1616644	2L_1616644_SNP [dm3] 2L_1616644_SNP [dm6]	G	A	1.797e^-5	0.158	INTERGENIC
2L	1616709	2L_1616709_SNP [dm3] 2L_1616709_SNP [dm6]	G	C	1.797e^-5	0.158	INTERGENIC
2R	15472880	2R_15472880_SNP [dm3] 2R_19585375_SNP [dm6]	C	T	1.847e^-5	0.161	INTRON sm
2R	15472892	2R_15472892_SNP [dm3] 2R_19585387_SNP [dm6]	G	A	1.847e^-5	0.161	INTRON sm
3L	16699817	3L_16699817_SNP [dm3] 3L_16706717_SNP [dm6]	C	T	1.850e^-5	0.161	DOWNSTREAM CG9692 INTRON Lasp & 1 other
3R	26377690	3R_26377690_SNP [dm3] 3R_30551968_SNP [dm6]	C	A	1.880e^-5	0.162	INTRON tmod
2L	401643	2L_401643_SNP [dm3] 2L_401643_SNP [dm6]	T	C	1.890e^-5	0.162	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
3R	908734	3R_908734_SNP [dm3] 3R_5083012_SNP [dm6]	T	C	1.896e^-5	0.162	UTR_3_PRIME corto DOWNSTREAM corto
2L	12828529	2L_12828529_SNP [dm3] 2L_12828529_SNP [dm6]	T	C	1.902e^-5	0.162	INTERGENIC
3R	9691721	3R_9691721_SNP [dm3] 3R_13865999_SNP [dm6]	T	A	1.952e^-5	0.163	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4163401	2L_4163401_SNP [dm3] 2L_4163401_SNP [dm6]	G	T	1.989e^-5	0.163	INTERGENIC
2L	16833315	2L_16833315_SNP [dm3] 2L_16833315_SNP [dm6]	C	T	1.996e^-5	0.163	INTRON CG13282
3R	15603690	3R_15603690_SNP [dm3] 3R_19777968_SNP [dm6]	A	G	1.998e^-5	0.163	UPSTREAM CG11659 & 1 other INTERGENIC
2R	16562359	2R_16562359_SNP [dm3] 2R_20674854_SNP [dm6]	C	T	2.009e^-5	0.163	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15243626	3R_15243626_SNP [dm3] 3R_19417904_SNP [dm6]	T	C	2.009e^-5	0.163	INTRON CG31221
2L	267005	2L_267005_SNP [dm3] 2L_267005_SNP [dm6]	A	G	2.016e^-5	0.163	UTR_5_PRIME CG17075 INTRON CG3645
2L	14061072	2L_14061072_SNP [dm3] 2L_14061072_SNP [dm6]	T	C	2.033e^-5	0.163	UTR_5_PRIME nAChRalpha5
3R	15600995	3R_15600995_SNP [dm3] 3R_19775273_SNP [dm6]	G	A	2.034e^-5	0.163	DOWNSTREAM CG11659 & 1 other INTERGENIC
3R	889157	3R_889157_SNP [dm3] 3R_5063435_SNP [dm6]	A	G	2.035e^-5	0.163	INTERGENIC	TF binding site mE1_TFBS_cad
2L	965348	2L_965348_SNP [dm3] 2L_965348_SNP [dm6]	C	G	2.037e^-5	0.163	INTERGENIC
3R	10389011	3R_10389011_SNP [dm3] 3R_14563289_SNP [dm6]	A	C	2.051e^-5	0.163	DOWNSTREAM CG14851 INTERGENIC	insulator Insulator_Class_II.mE01
3R	17675826	3R_17675826_DEL [dm3] 3R_21850104_DEL [dm6]	CAGTGAAGTC	A	2.057e^-5	0.163	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	323424	2L_323424_SNP [dm3] 2L_323424_SNP [dm6]	T	C	2.062e^-5	0.163	DOWNSTREAM CG33127 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	3771573	2L_3771573_SNP [dm3] 2L_3771573_SNP [dm6]	C	G	2.068e^-5	0.163	UPSTREAM bowl INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4406880	2L_4406880_SNP [dm3] 2L_4406880_SNP [dm6]	G	T	2.069e^-5	0.163	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	18500655	2L_18500655_SNP [dm3] 2L_18500655_SNP [dm6]	G	C	2.076e^-5	0.163	INTRON kon	TF binding site BDTNP1_TFBS_da
2L	66617	2L_66617_SNP [dm3] 2L_66617_SNP [dm6]	G	A	2.082e^-5	0.163	UPSTREAM dbr DOWNSTREAM CR45339 & 1 other INTRON dbr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15604319	3R_15604319_SNP [dm3] 3R_19778597_SNP [dm6]	T	A	2.088e^-5	0.163	UPSTREAM CG11391 INTERGENIC
3R	10388644	3R_10388644_SNP [dm3] 3R_14562922_SNP [dm6]	T	A	2.107e^-5	0.163	DOWNSTREAM CG14851 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4168947	2L_4168947_SNP [dm3] 2L_4168947_SNP [dm6]	A	T	2.111e^-5	0.163	INTERGENIC
2L	4170904	2L_4170904_SNP [dm3] 2L_4170904_SNP [dm6]	A	T	2.111e^-5	0.163	INTERGENIC
2L	13094605	2L_13094605_SNP [dm3] 2L_13094605_SNP [dm6]	A	T	2.120e^-5	0.163	INTERGENIC
2L	4415697	2L_4415697_SNP [dm3] 2L_4415697_SNP [dm6]	C	A	2.129e^-5	0.163	INTRON CG15431
3R	16337942	3R_16337942_SNP [dm3] 3R_20512220_SNP [dm6]	G	C	2.133e^-5	0.163	INTRON CG4288
2L	17052907	2L_17052907_SNP [dm3] 2L_17052907_SNP [dm6]	C	G	2.147e^-5	0.164	INTERGENIC
2L	11709130	2L_11709130_SNP [dm3] 2L_11709130_SNP [dm6]	T	A	2.154e^-5	0.164	INTERGENIC
3R	9723959	3R_9723959_SNP [dm3] 3R_13898237_SNP [dm6]	G	A	2.165e^-5	0.164	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	4405970	2L_4405970_SNP [dm3] 2L_4405970_SNP [dm6]	C	T	2.191e^-5	0.165	UTR_3_PRIME CG15431	TF binding site mE1_TFBS_cad
3L	8686267	3L_8686267_SNP [dm3] 3L_8693167_SNP [dm6]	T	G	2.207e^-5	0.165	EXON CR44526	TF binding site mE1_TFBS_cad
2L	4194005	2L_4194005_SNP [dm3] 2L_4194005_SNP [dm6]	G	A	2.212e^-5	0.165	INTRON CG3714	TF binding site mE1_TFBS_h
3R	22960273	3R_22960273_SNP [dm3] 3R_27134551_SNP [dm6]	C	T	2.223e^-5	0.165	INTRON CG6051
2L	282875	2L_282875_SNP [dm3] 2L_282875_SNP [dm6]	G	A	2.238e^-5	0.165	SYNONYMOUS_CODING CG11601 DOWNSTREAM smo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7311647	2R_7311647_SNP [dm3] 2R_11424142_SNP [dm6]	T	C	2.250e^-5	0.165	INTRON Drip
3R	15476044	3R_15476044_SNP [dm3] 3R_19650322_SNP [dm6]	G	A	2.256e^-5	0.165	SYNONYMOUS_CODING CG31220 UPSTREAM CG31219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12047193	3L_12047193_SNP [dm3] 3L_12054093_SNP [dm6]	A	G	2.259e^-5	0.165	INTRON rols	silencer mE1_HDAC_PRE
3R	16539003	3R_16539003_SNP [dm3] 3R_20713281_SNP [dm6]	T	G	2.265e^-5	0.165	INTRON Oamb
2L	10585957	2L_10585957_SNP [dm3] 2L_10585957_SNP [dm6]	C	T	2.278e^-5	0.165	INTRON Trim9
2R	1687822	2R_1687822_SNP [dm3] 2R_5800317_SNP [dm6]	A	T	2.280e^-5	0.165	INTERGENIC
2R	6057329	2R_6057329_SNP [dm3] 2R_10169824_SNP [dm6]	G	A	2.286e^-5	0.165	INTRON KCNQ
2L	11406601	2L_11406601_SNP [dm3] 2L_11406601_SNP [dm6]	A	C	2.317e^-5	0.165	INTERGENIC	regulatory region REDfly_CRMs
2L	3449478	2L_3449478_SNP [dm3] 2L_3449478_SNP [dm6]	A	G	2.322e^-5	0.165	UPSTREAM Snx1 INTERGENIC
3R	26368276	3R_26368276_SNP [dm3] 3R_30542554_SNP [dm6]	C	T	2.324e^-5	0.165	INTRON tmod
2L	4166166	2L_4166166_SNP [dm3] 2L_4166166_SNP [dm6]	G	A	2.329e^-5	0.165	UPSTREAM Or24a INTERGENIC
2L	4378464	2L_4378464_SNP [dm3] 2L_4378464_SNP [dm6]	T	G	2.344e^-5	0.165	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15601084	3R_15601084_SNP [dm3] 3R_19775362_SNP [dm6]	C	G	2.345e^-5	0.165	DOWNSTREAM CG11659 & 1 other INTERGENIC
2L	2799275	2L_2799275_SNP [dm3] 2L_2799275_SNP [dm6]	T	C	2.358e^-5	0.166	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26347302	3R_26347302_SNP [dm3] 3R_30521580_SNP [dm6]	G	A	2.461e^-5	0.17	INTRON jdp
2L	14604075	2L_14604075_SNP [dm3] 2L_14604075_SNP [dm6]	A	T	2.474e^-5	0.17	NON_SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10559857	2L_10559857_SNP [dm3] 2L_10559857_SNP [dm6]	C	T	2.492e^-5	0.17	INTRON Trim9
2L	10585949	2L_10585949_SNP [dm3] 2L_10585949_SNP [dm6]	T	A	2.499e^-5	0.17	INTRON Trim9
X	5869176	X_5869176_SNP [dm3] X_5975143_SNP [dm6]	T	C	2.505e^-5	0.17	INTRON Grip
2R	7311621	2R_7311621_SNP [dm3] 2R_11424116_SNP [dm6]	C	T	2.513e^-5	0.17	INTRON Drip
2L	1677010	2L_1677010_SNP [dm3] 2L_1677010_SNP [dm6]	A	G	2.525e^-5	0.17	INTRON chinmo
3R	16337934	3R_16337934_SNP [dm3] 3R_20512212_SNP [dm6]	T	A	2.530e^-5	0.17	INTRON CG4288
3R	885146	3R_885146_SNP [dm3] 3R_5059424_SNP [dm6]	G	T	2.532e^-5	0.17	INTERGENIC
2L	12854563	2L_12854563_SNP [dm3] 2L_12854563_SNP [dm6]	T	C	2.542e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4224494	2L_4224494_SNP [dm3] 2L_4224494_SNP [dm6]	T	G	2.543e^-5	0.17	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14135306	3R_14135306_SNP [dm3] 3R_18309584_SNP [dm6]	C	T	2.555e^-5	0.17	INTRON PKD	TF binding site mE1_TFBS_HSA
2R	4519557	2R_4519557_SNP [dm3] 2R_8632052_SNP [dm6]	T	A	2.556e^-5	0.17	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12688612	2L_12688612_SNP [dm3] 2L_12688612_SNP [dm6]	T	A	2.564e^-5	0.17	INTERGENIC
3L	8167877	3L_8167877_SNP [dm3] 3L_8174777_SNP [dm6]	C	T	2.570e^-5	0.17	NON_SYNONYMOUS_CODING RecQ4
2L	16290218	2L_16290218_SNP [dm3] 2L_16290218_SNP [dm6]	A	C	2.570e^-5	0.17	INTRON pkaap
2L	7409201	2L_7409201_SNP [dm3] 2L_7409201_SNP [dm6]	C	T	2.586e^-5	0.17	SYNONYMOUS_CODING CG5181 DOWNSTREAM CG5177
2L	10557868	2L_10557868_SNP [dm3] 2L_10557868_SNP [dm6]	C	A	2.587e^-5	0.17	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18139362	2L_18139362_SNP [dm3] 2L_18139362_SNP [dm6]	A	C	2.596e^-5	0.17	UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2L	4406602	2L_4406602_SNP [dm3] 2L_4406602_SNP [dm6]	A	G	2.624e^-5	0.17	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23887983	3R_23887983_SNP [dm3] 3R_28062261_SNP [dm6]	A	T	2.650e^-5	0.17	INTRON CG34362
X	19711673	X_19711673_SNP [dm3] X_19817640_SNP [dm6]	G	A	2.652e^-5	0.17	DOWNSTREAM skpC INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17741741	3L_17741741_SNP [dm3] 3L_17748641_SNP [dm6]	A	G	2.659e^-5	0.17	UTR_3_PRIME Ccn DOWNSTREAM Adgf-B
3R	13182054	3R_13182054_SNP [dm3] 3R_17356332_SNP [dm6]	G	T	2.661e^-5	0.17	INTRON beat-IIa
2L	3314172	2L_3314172_SNP [dm3] 2L_3314172_SNP [dm6]	C	T	2.662e^-5	0.17	SYNONYMOUS_CODING CG3277
3R	19718318	3R_19718318_SNP [dm3] 3R_23892596_SNP [dm6]	C	T	2.663e^-5	0.17	SYNONYMOUS_CODING tbrd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10389002	3R_10389002_SNP [dm3] 3R_14563280_SNP [dm6]	G	A	2.668e^-5	0.17	DOWNSTREAM CG14851 INTERGENIC
2L	4437237	2L_4437237_SNP [dm3] 2L_4437237_SNP [dm6]	A	T	2.670e^-5	0.17	UPSTREAM CG43056 INTRON CG15431
3R	15589648	3R_15589648_SNP [dm3] 3R_19763926_SNP [dm6]	A	T	2.685e^-5	0.17	INTRON GluClalpha
2L	3492177	2L_3492177_INS [dm3] 2L_3492177_INS [dm6]	G	GAAAGAAAA	2.692e^-5	0.17	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25642785	3R_25642785_SNP [dm3] 3R_29817063_SNP [dm6]	G	A	2.699e^-5	0.17	SYNONYMOUS_CODING CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22472490	3R_22472490_SNP [dm3] 3R_26646768_SNP [dm6]	A	T	2.712e^-5	0.17	UTR_3_PRIME beat-VII
3R	9770490	3R_9770490_SNP [dm3] 3R_13944768_SNP [dm6]	A	G	2.719e^-5	0.17	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad
2L	138437	2L_138437_SNP [dm3] 2L_138437_SNP [dm6]	T	A	2.724e^-5	0.17	UTR_3_PRIME CG31975 & 1 other INTRON CG11455
3R	10388941	3R_10388941_SNP [dm3] 3R_14563219_SNP [dm6]	T	A	2.745e^-5	0.17	DOWNSTREAM CG14851 INTERGENIC
2L	261971	2L_261971_SNP [dm3] 2L_261971_SNP [dm6]	C	T	2.760e^-5	0.17	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2L	261989	2L_261989_SNP [dm3] 2L_261989_SNP [dm6]	A	C	2.760e^-5	0.17	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2L	130946	2L_130946_DEL [dm3] 2L_130946_DEL [dm6]	TG	T	2.810e^-5	0.173	UPSTREAM CG3164 INTRON CG11455	TF binding site mE1_TFBS_Trl
2L	389843	2L_389843_SNP [dm3] 2L_389843_SNP [dm6]	G	A	2.817e^-5	0.173	INTERGENIC
3L	16700599	3L_16700599_SNP [dm3] 3L_16707499_SNP [dm6]	C	T	2.830e^-5	0.173	INTRON Lasp & 1 other
2L	7994537	2L_7994537_SNP [dm3] 2L_7994537_SNP [dm6]	G	T	2.867e^-5	0.173	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	16609161	2L_16609161_SNP [dm3] 2L_16609161_SNP [dm6]	G	C	2.867e^-5	0.173	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	16609167	2L_16609167_SNP [dm3] 2L_16609167_SNP [dm6]	C	T	2.867e^-5	0.173	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	21686163	2L_21686163_SNP [dm3] 2L_21686163_SNP [dm6]	A	C	2.871e^-5	0.173	INTRON CG31619	transposable element FlyBase
2R	15472508	2R_15472508_SNP [dm3] 2R_19585003_SNP [dm6]	T	G	2.873e^-5	0.173	INTRON sm
2L	404751	2L_404751_SNP [dm3] 2L_404751_SNP [dm6]	C	G	2.905e^-5	0.174	SYNONYMOUS_CODING RpI135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4391532	2L_4391532_SNP [dm3] 2L_4391532_SNP [dm6]	C	T	2.906e^-5	0.174	SYNONYMOUS_CODING Tps1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13258082	3L_13258082_SNP [dm3] 3L_13264982_SNP [dm6]	G	C	2.918e^-5	0.174	INTRON caps
3R	15589638	3R_15589638_SNP [dm3] 3R_19763916_SNP [dm6]	T	G	2.937e^-5	0.174	INTRON GluClalpha
X	17025647	X_17025647_SNP [dm3] X_17131614_SNP [dm6]	A	G	2.942e^-5	0.174	INTRON CG5004
2L	1960585	2L_1960585_SNP [dm3] 2L_1960585_SNP [dm6]	C	T	2.982e^-5	0.175	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16292706	2L_16292706_SNP [dm3] 2L_16292706_SNP [dm6]	A	G	2.987e^-5	0.175	SYNONYMOUS_CODING CG13258 DOWNSTREAM CG17329 & 1 other	TF binding site mE1_TFBS_inv
2R	12928837	2R_12928837_SNP [dm3] 2R_17041332_SNP [dm6]	G	A	3.011e^-5	0.175	SYNONYMOUS_CODING RhoGEF2 EXON CR45145
3R	16538820	3R_16538820_INS [dm3] 3R_20713098_INS [dm6]	T	AA	3.015e^-5	0.175	INTRON Oamb
X	5213196	X_5213196_SNP [dm3] X_5319163_SNP [dm6]	G	A	3.023e^-5	0.175	SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2L	7444580	2L_7444580_SNP [dm3] 2L_7444580_SNP [dm6]	A	G	3.026e^-5	0.175	SYNONYMOUS_CODING CG5973 DOWNSTREAM santa-maria
3R	351894	3R_351894_SNP [dm3] 3R_4526172_SNP [dm6]	A	T	3.036e^-5	0.175	INTRON CG34357
3L	3507240	3L_3507240_SNP [dm3] 3L_3507240_SNP [dm6]	G	A	3.048e^-5	0.175	INTRON CG42324	TF binding site mE1_TFBS_cad
3L	3507242	3L_3507242_MNP [dm3] 3L_3507242_MNP [dm6]	GGA	AAG	3.048e^-5	0.175	INTRON CG42324	TF binding site mE1_TFBS_cad
3R	18721777	3R_18721777_SNP [dm3] 3R_22896055_SNP [dm6]	C	G	3.055e^-5	0.175	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3486376	2L_3486376_SNP [dm3] 2L_3486376_SNP [dm6]	A	G	3.065e^-5	0.175	INTRON CG15414
2R	9089279	2R_9089279_SNP [dm3] 2R_13201774_SNP [dm6]	C	T	3.069e^-5	0.175	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3507238	3L_3507238_SNP [dm3] 3L_3507238_SNP [dm6]	C	A	3.106e^-5	0.176	INTRON CG42324	TF binding site mE1_TFBS_cad
3R	10389024	3R_10389024_SNP [dm3] 3R_14563302_SNP [dm6]	A	G	3.108e^-5	0.176	DOWNSTREAM CG14851 INTERGENIC
2L	11396718	2L_11396718_SNP [dm3] 2L_11396718_SNP [dm6]	G	T	3.142e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs
2L	11396727	2L_11396727_SNP [dm3] 2L_11396727_SNP [dm6]	G	A	3.142e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs
2L	11396730	2L_11396730_INS [dm3] 2L_11396730_INS [dm6]	T	TGA	3.142e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs
3L	1111398	3L_1111398_SNP [dm3] 3L_1111398_SNP [dm6]	C	G	3.167e^-5	0.177	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17720639	2R_17720639_SNP [dm3] 2R_21833134_SNP [dm6]	T	G	3.172e^-5	0.177	INTRON CG34040
3R	9542553	3R_9542553_SNP [dm3] 3R_13716831_SNP [dm6]	G	T	3.177e^-5	0.177	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	9615915	3R_9615915_SNP [dm3] 3R_13790193_SNP [dm6]	C	G	3.188e^-5	0.177	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
2L	16610325	2L_16610325_SNP [dm3] 2L_16610325_SNP [dm6]	G	A	3.231e^-5	0.179	DOWNSTREAM CG4631 INTRON CG42389
3R	16338044	3R_16338044_SNP [dm3] 3R_20512322_SNP [dm6]	A	T	3.258e^-5	0.179	INTRON CG4288	TF binding site BDTNP1_TFBS_sna
2L	10586676	2L_10586676_SNP [dm3] 2L_10586676_SNP [dm6]	T	C	3.261e^-5	0.179	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17023855	2L_17023855_SNP [dm3] 2L_17023855_SNP [dm6]	C	A	3.273e^-5	0.179	INTERGENIC
2R	16505970	2R_16505970_SNP [dm3] 2R_20618465_SNP [dm6]	T	C	3.312e^-5	0.181	UPSTREAM CG9945 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15604283	3R_15604283_SNP [dm3] 3R_19778561_SNP [dm6]	G	A	3.321e^-5	0.181	UPSTREAM CG11391 INTERGENIC
2L	11396729	2L_11396729_SNP [dm3] 2L_11396729_SNP [dm6]	T	A	3.342e^-5	0.182	INTERGENIC	regulatory region REDfly_CRMs
2L	4224490	2L_4224490_SNP [dm3] 2L_4224490_SNP [dm6]	T	A	3.413e^-5	0.185	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8686233	3L_8686233_SNP [dm3] 3L_8693133_SNP [dm6]	T	A	3.423e^-5	0.185	EXON CR44526	TF binding site mE1_TFBS_cad
2L	9905688	2L_9905688_SNP [dm3] 2L_9905688_SNP [dm6]	C	T	3.443e^-5	0.185	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10579159	2L_10579159_SNP [dm3] 2L_10579159_SNP [dm6]	C	G	3.475e^-5	0.185	UPSTREAM CG34160 INTRON Trim9
X	6420743	X_6420743_SNP [dm3] X_6526710_SNP [dm6]	C	T	3.479e^-5	0.185	SYNONYMOUS_CODING CG3342 DOWNSTREAM CG3918	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11396717	2L_11396717_SNP [dm3] 2L_11396717_SNP [dm6]	G	T	3.497e^-5	0.185	INTERGENIC	regulatory region REDfly_CRMs
3L	8163955	3L_8163955_SNP [dm3] 3L_8170855_SNP [dm6]	G	T	3.500e^-5	0.185	NON_SYNONYMOUS_CODING RecQ4
2R	5871653	2R_5871653_SNP [dm3] 2R_9984148_SNP [dm6]	C	T	3.503e^-5	0.185	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12854976	2L_12854976_SNP [dm3] 2L_12854976_SNP [dm6]	A	T	3.512e^-5	0.185	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16538803	3R_16538803_SNP [dm3] 3R_20713081_SNP [dm6]	A	G	3.516e^-5	0.185	INTRON Oamb
3L	3781771	3L_3781771_SNP [dm3] 3L_3781771_SNP [dm6]	C	A	3.522e^-5	0.185	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	955578	2L_955578_SNP [dm3] 2L_955578_SNP [dm6]	A	T	3.523e^-5	0.185	INTRON CG4341
3L	14343487	3L_14343487_SNP [dm3] 3L_14350387_SNP [dm6]	T	A	3.536e^-5	0.185	INTRON fz
3R	15604103	3R_15604103_SNP [dm3] 3R_19778381_SNP [dm6]	G	A	3.558e^-5	0.185	UPSTREAM CG11391 INTERGENIC
2L	12840565	2L_12840565_SNP [dm3] 2L_12840565_SNP [dm6]	G	A	3.559e^-5	0.185	UPSTREAM CR44970 & 1 other INTERGENIC
2L	1065200	2L_1065200_SNP [dm3] 2L_1065200_SNP [dm6]	C	T	3.586e^-5	0.186	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16637026	2L_16637026_SNP [dm3] 2L_16637026_SNP [dm6]	T	G	3.593e^-5	0.186	INTRON CG42389
2L	11396768	2L_11396768_SNP [dm3] 2L_11396768_SNP [dm6]	T	A	3.604e^-5	0.186	INTERGENIC	regulatory region REDfly_CRMs
2L	11396776	2L_11396776_SNP [dm3] 2L_11396776_SNP [dm6]	T	A	3.604e^-5	0.186	INTERGENIC	regulatory region REDfly_CRMs
2L	3531243	2L_3531243_SNP [dm3] 2L_3531243_SNP [dm6]	T	A	3.619e^-5	0.186	UPSTREAM Spindly INTRON Che-13
2L	3471869	2L_3471869_SNP [dm3] 2L_3471869_SNP [dm6]	G	A	3.655e^-5	0.187	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1
X	6116736	X_6116736_INS [dm3] X_6222703_INS [dm6]	A	AA	3.693e^-5	0.188	UTR_3_PRIME Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	12321201	2L_12321201_SNP [dm3] 2L_12321201_SNP [dm6]	A	C	3.708e^-5	0.188	INTERGENIC
3L	15266438	3L_15266438_SNP [dm3] 3L_15273338_SNP [dm6]	A	T	3.709e^-5	0.188	INTERGENIC
3L	8686281	3L_8686281_SNP [dm3] 3L_8693181_SNP [dm6]	C	A	3.710e^-5	0.188	EXON CR44526	TF binding site mE1_TFBS_cad
2R	12928751	2R_12928751_SNP [dm3] 2R_17041246_SNP [dm6]	C	T	3.719e^-5	0.188	SYNONYMOUS_CODING RhoGEF2 EXON CR45145
2L	2680458	2L_2680458_SNP [dm3] 2L_2680458_SNP [dm6]	C	T	3.724e^-5	0.188	INTRON CG31690
3L	17740682	3L_17740682_SNP [dm3] 3L_17747582_SNP [dm6]	A	T	3.737e^-5	0.188	UPSTREAM CG6034 INTRON Ccn
2L	2380787	2L_2380787_SNP [dm3] 2L_2380787_SNP [dm6]	G	T	3.747e^-5	0.188	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15379932	3L_15379932_SNP [dm3] 3L_15386832_SNP [dm6]	G	A	3.778e^-5	0.188	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4426099	2R_4426099_SNP [dm3] 2R_8538594_SNP [dm6]	C	G	3.779e^-5	0.188	INTERGENIC
2L	11420541	2L_11420541_DEL [dm3] 2L_11420541_DEL [dm6]	AGTGGGAGGTGAAAGA...	A	3.787e^-5	0.188	INTERGENIC
2L	1658007	2L_1658007_INS [dm3] 2L_1658007_INS [dm6]	T	TGCCACACGAGA...	3.796e^-5	0.188	INTRON chinmo	TF binding site mE1_TFBS_Kr
2L	5959493	2L_5959493_SNP [dm3] 2L_5959493_SNP [dm6]	T	C	3.797e^-5	0.188	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2R	5852195	2R_5852195_SNP [dm3] 2R_9964690_SNP [dm6]	G	A	3.824e^-5	0.189	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	1111385	3L_1111385_SNP [dm3] 3L_1111385_SNP [dm6]	A	C	3.861e^-5	0.19	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16700374	3L_16700374_INS [dm3] 3L_16707274_INS [dm6]	G	GG	3.917e^-5	0.192	DOWNSTREAM CG9692 INTRON Lasp & 1 other
2L	4418366	2L_4418366_SNP [dm3] 2L_4418366_SNP [dm6]	C	G	3.953e^-5	0.193	DOWNSTREAM tRNA:CR31963 INTRON CG15431
3R	10388863	3R_10388863_SNP [dm3] 3R_14563141_SNP [dm6]	T	C	3.961e^-5	0.193	DOWNSTREAM CG14851 INTERGENIC
2L	17052909	2L_17052909_SNP [dm3] 2L_17052909_SNP [dm6]	G	C	3.962e^-5	0.193	INTERGENIC
2R	11625355	2R_11625355_SNP [dm3] 2R_15737850_SNP [dm6]	A	T	3.988e^-5	0.193	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5852638	2R_5852638_SNP [dm3] 2R_9965133_SNP [dm6]	A	T	4.009e^-5	0.193	UPSTREAM CG1418 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10575335	2L_10575335_SNP [dm3] 2L_10575335_SNP [dm6]	T	C	4.010e^-5	0.193	DOWNSTREAM w-cup INTRON Trim9
3L	3507256	3L_3507256_SNP [dm3] 3L_3507256_SNP [dm6]	A	C	4.034e^-5	0.193	INTRON CG42324	TF binding site mE1_TFBS_cad
2L	11380329	2L_11380329_INS [dm3] 2L_11380329_INS [dm6]	G	GG	4.039e^-5	0.193	INTERGENIC	regulatory region REDfly_CRMs
3R	27075870	3R_27075870_SNP [dm3] 3R_31250148_SNP [dm6]	G	C	4.047e^-5	0.193	INTRON qless
3L	3781757	3L_3781757_SNP [dm3] 3L_3781757_SNP [dm6]	C	A	4.053e^-5	0.193	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1593385	2L_1593385_SNP [dm3] 2L_1593385_SNP [dm6]	A	C	4.069e^-5	0.193	INTRON haf
2L	1608026	2L_1608026_SNP [dm3] 2L_1608026_SNP [dm6]	G	A	4.069e^-5	0.193	UTR_3_PRIME haf INTRON CG31935
2L	1283399	2L_1283399_SNP [dm3] 2L_1283399_SNP [dm6]	A	T	4.091e^-5	0.193	INTRON robo3
X	15199297	X_15199297_SNP [dm3] X_15305264_SNP [dm6]	T	G	4.106e^-5	0.193	INTRON gce
3R	15603912	3R_15603912_SNP [dm3] 3R_19778190_SNP [dm6]	G	A	4.124e^-5	0.193	UPSTREAM CG11659 & 1 other INTERGENIC
3R	23886891	3R_23886891_SNP [dm3] 3R_28061169_SNP [dm6]	A	T	4.143e^-5	0.193	INTRON CG34362
2L	11353994	2L_11353994_SNP [dm3] 2L_11353994_SNP [dm6]	G	C	4.147e^-5	0.193	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8548502	2L_8548502_SNP [dm3] 2L_8548502_SNP [dm6]	C	A	4.149e^-5	0.193	INTRON Sema-1a
2R	15472699	2R_15472699_SNP [dm3] 2R_19585194_SNP [dm6]	G	T	4.153e^-5	0.193	INTRON sm
3R	27075848	3R_27075848_SNP [dm3] 3R_31250126_SNP [dm6]	G	A	4.154e^-5	0.193	INTRON qless
2L	10586675	2L_10586675_SNP [dm3] 2L_10586675_SNP [dm6]	G	T	4.155e^-5	0.193	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12766435	2L_12766435_SNP [dm3] 2L_12766435_SNP [dm6]	C	T	4.160e^-5	0.193	INTERGENIC
2L	2422175	2L_2422175_SNP [dm3] 2L_2422175_SNP [dm6]	C	T	4.201e^-5	0.194	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo
2L	11491058	2L_11491058_SNP [dm3] 2L_11491058_SNP [dm6]	G	T	4.207e^-5	0.194	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9214927	2R_9214927_SNP [dm3] 2R_13327422_SNP [dm6]	C	T	4.211e^-5	0.194	INTERGENIC
3R	10388680	3R_10388680_SNP [dm3] 3R_14562958_SNP [dm6]	T	C	4.225e^-5	0.194	DOWNSTREAM CG14851 INTERGENIC
3R	16538768	3R_16538768_SNP [dm3] 3R_20713046_SNP [dm6]	T	C	4.233e^-5	0.194	INTRON Oamb
2L	4437138	2L_4437138_SNP [dm3] 2L_4437138_SNP [dm6]	T	G	4.244e^-5	0.194	UPSTREAM CG43056 INTRON CG15431
3R	10389951	3R_10389951_SNP [dm3] 3R_14564229_SNP [dm6]	T	C	4.330e^-5	0.197	DOWNSTREAM CG8087 INTERGENIC
3R	18688457	3R_18688457_SNP [dm3] 3R_22862735_SNP [dm6]	A	C	4.330e^-5	0.197	INTERGENIC
2L	17600205	2L_17600205_SNP [dm3] 2L_17600205_SNP [dm6]	A	C	4.353e^-5	0.197	INTRON Sytalpha
2L	879122	2L_879122_SNP [dm3] 2L_879122_SNP [dm6]	A	C	4.379e^-5	0.197	NON_SYNONYMOUS_CODING CG15824 DOWNSTREAM ninaA	TF binding site mE1_TFBS_cad
2L	1074191	2L_1074191_SNP [dm3] 2L_1074191_SNP [dm6]	A	C	4.379e^-5	0.197	INTRON S	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	3688815	3L_3688815_SNP [dm3] 3L_3688815_SNP [dm6]	G	A	4.382e^-5	0.197	EXON CR43484
2L	2873038	2L_2873038_DEL [dm3] 2L_2873038_DEL [dm6]	ATGGTTATAT	A	4.415e^-5	0.198	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2889913	3L_2889913_SNP [dm3] 3L_2889913_SNP [dm6]	T	G	4.419e^-5	0.198	INTRON spz5
2R	420723	2R_420723_SNP [dm3] 2R_4533218_SNP [dm6]	T	G	4.473e^-5	0.2	INTERGENIC	transposable element FlyBase
2L	397103	2L_397103_SNP [dm3] 2L_397103_SNP [dm6]	C	T	4.476e^-5	0.2	SYNONYMOUS_CODING CG4213 DOWNSTREAM CR43718	TF binding site mE1_TFBS_cad
2L	7444649	2L_7444649_SNP [dm3] 2L_7444649_SNP [dm6]	T	C	4.499e^-5	0.2	SPLICE_SITE_REGION CG5973 DOWNSTREAM santa-maria INTRON CG5973
2R	8243754	2R_8243754_SNP [dm3] 2R_12356249_SNP [dm6]	G	A	4.525e^-5	0.201	NON_SYNONYMOUS_CODING CG30049 DOWNSTREAM CG30047	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8035349	3L_8035349_DEL [dm3] 3L_8042249_DEL [dm6]	TT	T	4.563e^-5	0.202	INTRON nmo
2L	1592613	2L_1592613_SNP [dm3] 2L_1592613_SNP [dm6]	G	T	4.586e^-5	0.202	INTRON haf
2L	1592614	2L_1592614_SNP [dm3] 2L_1592614_SNP [dm6]	C	G	4.586e^-5	0.202	INTRON haf
2L	4391529	2L_4391529_SNP [dm3] 2L_4391529_SNP [dm6]	C	G	4.604e^-5	0.202	SYNONYMOUS_CODING Tps1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3771439	2L_3771439_SNP [dm3] 2L_3771439_SNP [dm6]	T	A	4.626e^-5	0.202	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16538788	3R_16538788_SNP [dm3] 3R_20713066_SNP [dm6]	G	T	4.639e^-5	0.202	INTRON Oamb
3R	26585550	3R_26585550_SNP [dm3] 3R_30759828_SNP [dm6]	T	C	4.642e^-5	0.202	INTERGENIC
2R	4428655	2R_4428655_SNP [dm3] 2R_8541150_SNP [dm6]	C	T	4.650e^-5	0.202	INTERGENIC
2R	19815901	2R_19815901_SNP [dm3] 2R_23928378_SNP [dm6]	G	A	4.650e^-5	0.202	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON Ca-P60A
2L	19554007	2L_19554007_SNP [dm3] 2L_19554007_SNP [dm6]	A	G	4.651e^-5	0.202	SYNONYMOUS_CODING Tep4
2R	17907509	2R_17907509_SNP [dm3] 2R_22020004_SNP [dm6]	T	C	4.662e^-5	0.202	INTRON CG34370
X	6118432	X_6118432_SNP [dm3] X_6224399_SNP [dm6]	T	A	4.685e^-5	0.202	UPSTREAM sqh INTRON sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9210041	2R_9210041_SNP [dm3] 2R_13322536_SNP [dm6]	A	T	4.685e^-5	0.202	INTERGENIC
3R	10388977	3R_10388977_SNP [dm3] 3R_14563255_SNP [dm6]	G	T	4.701e^-5	0.202	DOWNSTREAM CG14851 INTERGENIC
2R	19787953	2R_19787953_SNP [dm3] 2R_23900430_SNP [dm6]	A	T	4.705e^-5	0.202	NON_SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo
3R	21159502	3R_21159502_SNP [dm3] 3R_25333780_SNP [dm6]	T	A	4.722e^-5	0.202	NON_SYNONYMOUS_CODING CG10669	TF binding site mE1_TFBS_sens
2L	22537882	2L_22537882_SNP [dm3] 2L_22645150_SNP [dm6]	C	T	4.774e^-5	0.203	INTRON CG40006
3R	21963073	3R_21963073_SNP [dm3] 3R_26137351_SNP [dm6]	C	T	4.786e^-5	0.203	DOWNSTREAM CG6142 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1318143	2L_1318143_SNP [dm3] 2L_1318143_SNP [dm6]	G	A	4.802e^-5	0.203	INTERGENIC
2R	4420239	2R_4420239_SNP [dm3] 2R_8532734_SNP [dm6]	G	C	4.805e^-5	0.203	UPSTREAM mtt INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11835851	2L_11835851_SNP [dm3] 2L_11835851_SNP [dm6]	C	A	4.811e^-5	0.203	DOWNSTREAM CG45012 & 1 other INTRON Pde1c EXON CR45013
2L	16626238	2L_16626238_SNP [dm3] 2L_16626238_SNP [dm6]	C	T	4.811e^-5	0.203	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8035385	3L_8035385_SNP [dm3] 3L_8042285_SNP [dm6]	A	G	4.822e^-5	0.203	INTRON nmo
2L	8050068	2L_8050068_SNP [dm3] 2L_8050068_SNP [dm6]	C	T	4.823e^-5	0.203	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
3L	15372340	3L_15372340_SNP [dm3] 3L_15379240_SNP [dm6]	G	A	4.828e^-5	0.203	INTERGENIC
2L	1630306	2L_1630306_SNP [dm3] 2L_1630306_SNP [dm6]	C	T	4.851e^-5	0.203	INTERGENIC
3L	17011486	3L_17011486_SNP [dm3] 3L_17018386_SNP [dm6]	G	A	4.885e^-5	0.204	NON_SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21167981	3R_21167981_DEL [dm3] 3R_25342259_DEL [dm6]	ACTGCAAACGGAGCTCAAAG...	A	4.900e^-5	0.204	CODON_DELETION rha
2L	3771413	2L_3771413_SNP [dm3] 2L_3771413_SNP [dm6]	C	A	4.921e^-5	0.205	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15603810	3R_15603810_SNP [dm3] 3R_19778088_SNP [dm6]	A	T	4.954e^-5	0.206	UPSTREAM CG11659 & 1 other INTERGENIC
2L	10579166	2L_10579166_SNP [dm3] 2L_10579166_SNP [dm6]	A	C	5.008e^-5	0.206	UPSTREAM CG34160 INTRON Trim9
3R	17346352	3R_17346352_SNP [dm3] 3R_21520630_SNP [dm6]	T	A	5.011e^-5	0.206	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
2L	16609186	2L_16609186_SNP [dm3] 2L_16609186_SNP [dm6]	G	C	5.018e^-5	0.206	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	16609189	2L_16609189_SNP [dm3] 2L_16609189_SNP [dm6]	G	A	5.018e^-5	0.206	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	11888843	2L_11888843_SNP [dm3] 2L_11888843_SNP [dm6]	T	C	5.037e^-5	0.206	INTRON Pde1c
3R	16370930	3R_16370930_DEL [dm3] 3R_20545208_DEL [dm6]	AA	A	5.044e^-5	0.206	INTRON Stat92E
2L	955621	2L_955621_SNP [dm3] 2L_955621_SNP [dm6]	T	G	5.063e^-5	0.206	INTRON CG4341
2L	12840564	2L_12840564_SNP [dm3] 2L_12840564_SNP [dm6]	T	A	5.078e^-5	0.206	UPSTREAM CR44970 & 1 other INTERGENIC
2L	12840569	2L_12840569_SNP [dm3] 2L_12840569_SNP [dm6]	G	A	5.078e^-5	0.206	UPSTREAM CR44970 & 1 other INTERGENIC
2L	1470186	2L_1470186_SNP [dm3] 2L_1470186_SNP [dm6]	A	G	5.086e^-5	0.206	INTERGENIC
2L	14604166	2L_14604166_SNP [dm3] 2L_14604166_SNP [dm6]	G	A	5.091e^-5	0.206	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	385679	2L_385679_SNP [dm3] 2L_385679_SNP [dm6]	T	A	5.108e^-5	0.206	INTRON al
3R	10389036	3R_10389036_SNP [dm3] 3R_14563314_SNP [dm6]	A	T	5.115e^-5	0.206	DOWNSTREAM CG14851 INTERGENIC
2L	11373200	2L_11373200_SNP [dm3] 2L_11373200_SNP [dm6]	G	A	5.116e^-5	0.206	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
3L	7300823	3L_7300823_SNP [dm3] 3L_7307723_SNP [dm6]	T	G	5.123e^-5	0.206	INTRON unc-13-4A
2L	10541700	2L_10541700_SNP [dm3] 2L_10541700_SNP [dm6]	G	A	5.137e^-5	0.206	INTERGENIC
2R	2001884	2R_2001884_SNP [dm3] 2R_6114379_SNP [dm6]	T	G	5.150e^-5	0.206	INTRON EcR
2L	9917194	2L_9917194_SNP [dm3] 2L_9917194_SNP [dm6]	C	A	5.173e^-5	0.206	UTR_3_PRIME yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
2L	10572819	2L_10572819_SNP [dm3] 2L_10572819_SNP [dm6]	T	A	5.278e^-5	0.21	INTRON Trim9
2L	12828345	2L_12828345_SNP [dm3] 2L_12828345_SNP [dm6]	T	G	5.279e^-5	0.21	INTERGENIC
2L	483515	2L_483515_SNP [dm3] 2L_483515_SNP [dm6]	G	A	5.288e^-5	0.21	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	13989210	2R_13989210_INS [dm3] 2R_18101705_INS [dm6]	T	TA	5.309e^-5	0.21	FRAME_SHIFT CG5756 DOWNSTREAM CG5098	TF binding site mE1_TFBS_cad
2L	1372783	2L_1372783_SNP [dm3] 2L_1372783_SNP [dm6]	T	C	5.310e^-5	0.21	INTERGENIC
2L	4401347	2L_4401347_SNP [dm3] 2L_4401347_SNP [dm6]	C	T	5.339e^-5	0.21	SPLICE_SITE_REGION CG33003 DOWNSTREAM l_2_k05819 INTRON CG33003	TF binding site mE1_TFBS_cad
3L	19071400	3L_19071400_SNP [dm3] 3L_19078300_SNP [dm6]	C	A	5.343e^-5	0.21	INTRON Mkp3	TF binding site BDTNP1_TFBS_sna
2L	4210543	2L_4210543_SNP [dm3] 2L_4210543_SNP [dm6]	C	T	5.343e^-5	0.21	INTRON ft	TF binding site mE1_TFBS_inv
2R	758952	2R_758952_DEL [dm3] 2R_4871447_DEL [dm6]	AA	A	5.364e^-5	0.21	INTERGENIC
3R	9707859	3R_9707859_SNP [dm3] 3R_13882137_SNP [dm6]	T	A	5.373e^-5	0.21	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1595091	2L_1595091_SNP [dm3] 2L_1595091_SNP [dm6]	C	T	5.406e^-5	0.211	SYNONYMOUS_CODING CG31935 INTRON haf
X	5869270	X_5869270_SNP [dm3] X_5975237_SNP [dm6]	G	C	5.415e^-5	0.211	INTRON Grip
2L	1380029	2L_1380029_SNP [dm3] 2L_1380029_SNP [dm6]	C	A	5.448e^-5	0.211	DOWNSTREAM CR44898 & 1 other INTERGENIC
2L	10155485	2L_10155485_SNP [dm3] 2L_10155485_SNP [dm6]	C	A	5.452e^-5	0.211	UTR_3_PRIME CG4839 INTRON CG44153
2L	1793535	2L_1793535_SNP [dm3] 2L_1793535_SNP [dm6]	A	G	5.480e^-5	0.212	UPSTREAM Gr22b DOWNSTREAM Gr22a INTERGENIC
3R	20957926	3R_20957926_SNP [dm3] 3R_25132204_SNP [dm6]	T	A	5.512e^-5	0.213	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1604805	2L_1604805_SNP [dm3] 2L_1604805_SNP [dm6]	A	T	5.620e^-5	0.215	SYNONYMOUS_CODING haf INTRON CG31935
2R	8733526	2R_8733526_SNP [dm3] 2R_12846021_SNP [dm6]	T	C	5.632e^-5	0.215	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17165359	2L_17165359_SNP [dm3] 2L_17165359_SNP [dm6]	T	C	5.641e^-5	0.215	INTRON beat-IIIa & 1 other
2L	1283734	2L_1283734_SNP [dm3] 2L_1283734_SNP [dm6]	C	T	5.662e^-5	0.215	INTRON robo3
2R	11480908	2R_11480908_SNP [dm3] 2R_15593403_SNP [dm6]	T	G	5.688e^-5	0.215	INTERGENIC
2L	10580270	2L_10580270_SNP [dm3] 2L_10580270_SNP [dm6]	T	C	5.691e^-5	0.215	UTR_3_PRIME CG34160 DOWNSTREAM CG34161 INTRON Trim9
3R	15635338	3R_15635338_SNP [dm3] 3R_19809616_SNP [dm6]	G	T	5.695e^-5	0.215	INTRON bnl
3R	14758059	3R_14758059_SNP [dm3] 3R_18932337_SNP [dm6]	T	A	5.697e^-5	0.215	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14110613	2L_14110613_SNP [dm3] 2L_14110613_SNP [dm6]	G	T	5.717e^-5	0.215	INTRON CG31769
2R	19556771	2R_19556771_SNP [dm3] 2R_23669248_SNP [dm6]	A	C	5.727e^-5	0.215	UTR_5_PRIME Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3972332	2L_3972332_SNP [dm3] 2L_3972332_SNP [dm6]	G	C	5.734e^-5	0.215	INTRON fred
2L	1337651	2L_1337651_SNP [dm3] 2L_1337651_SNP [dm6]	T	A	5.739e^-5	0.215	INTERGENIC
3L	8168089	3L_8168089_SNP [dm3] 3L_8174989_SNP [dm6]	T	C	5.779e^-5	0.215	NON_SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_sens
3R	15622588	3R_15622588_SNP [dm3] 3R_19796866_SNP [dm6]	C	A	5.797e^-5	0.215	NON_SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2L	1318153	2L_1318153_SNP [dm3] 2L_1318153_SNP [dm6]	G	T	5.798e^-5	0.215	INTERGENIC
2L	16609181	2L_16609181_SNP [dm3] 2L_16609181_SNP [dm6]	A	T	5.809e^-5	0.215	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	4908483	3L_4908483_SNP [dm3] 3L_4908483_SNP [dm6]	T	C	5.811e^-5	0.215	INTERGENIC
3R	16424589	3R_16424589_DEL [dm3] 3R_20598867_DEL [dm6]	AGCA	A	5.825e^-5	0.215	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10539510	2L_10539510_SNP [dm3] 2L_10539510_SNP [dm6]	C	A	5.830e^-5	0.215	INTERGENIC
3R	21159515	3R_21159515_SNP [dm3] 3R_25333793_SNP [dm6]	C	T	5.838e^-5	0.215	SYNONYMOUS_CODING CG10669	TF binding site mE1_TFBS_sens
2L	14600692	2L_14600692_SNP [dm3] 2L_14600692_SNP [dm6]	T	A	5.856e^-5	0.215	NON_SYNONYMOUS_CODING osp UTR_3_PRIME osp DOWNSTREAM tRNA:P:35Bc
2L	1593844	2L_1593844_SNP [dm3] 2L_1593844_SNP [dm6]	G	A	5.868e^-5	0.215	DOWNSTREAM CG31935 INTRON haf
2L	1593898	2L_1593898_SNP [dm3] 2L_1593898_SNP [dm6]	T	C	5.868e^-5	0.215	DOWNSTREAM CG31935 INTRON haf
2L	1602048	2L_1602048_SNP [dm3] 2L_1602048_SNP [dm6]	A	T	5.868e^-5	0.215	INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
2L	1608224	2L_1608224_SNP [dm3] 2L_1608224_SNP [dm6]	G	A	5.868e^-5	0.215	UTR_3_PRIME haf INTRON CG31935
2L	22537880	2L_22537880_SNP [dm3] 2L_22645148_SNP [dm6]	T	G	5.893e^-5	0.215	INTRON CG40006
2L	16290219	2L_16290219_SNP [dm3] 2L_16290219_SNP [dm6]	T	C	5.895e^-5	0.215	INTRON pkaap
X	14732834	X_14732834_SNP [dm3] X_14838801_SNP [dm6]	T	A	5.909e^-5	0.216	UPSTREAM CG14407 & 1 other INTRON CG32590	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6018552	2L_6018552_SNP [dm3] 2L_6018552_SNP [dm6]	C	T	5.920e^-5	0.216	INTRON H2.0	TF binding site mE1_TFBS_cad
3R	20313360	3R_20313360_SNP [dm3] 3R_24487638_SNP [dm6]	C	A	5.934e^-5	0.216	UPSTREAM mir-1017 INTRON nAChRalpha2
3L	3130120	3L_3130120_SNP [dm3] 3L_3130120_SNP [dm6]	G	A	5.981e^-5	0.217	SYNONYMOUS_CODING CG11537
2L	9894665	2L_9894665_SNP [dm3] 2L_9894665_SNP [dm6]	C	A	6.002e^-5	0.217	UPSTREAM snoRNA:U14:30Eb & 3 others DOWNSTREAM snoRNA:Me18S-A1576 EXON Uhg2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3225757	2L_3225757_SNP [dm3] 2L_3225757_SNP [dm6]	C	T	6.004e^-5	0.217	INTERGENIC
3R	10388791	3R_10388791_SNP [dm3] 3R_14563069_SNP [dm6]	A	T	6.041e^-5	0.218	DOWNSTREAM CG14851 INTERGENIC
2L	17801565	2L_17801565_SNP [dm3] 2L_17801565_SNP [dm6]	A	T	6.077e^-5	0.218	INTRON CadN2
2L	2762600	2L_2762600_SNP [dm3] 2L_2762600_SNP [dm6]	T	G	6.086e^-5	0.218	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19095902	3L_19095902_SNP [dm3] 3L_19102802_SNP [dm6]	T	C	6.109e^-5	0.218	INTERGENIC
3R	15603804	3R_15603804_SNP [dm3] 3R_19778082_SNP [dm6]	A	C	6.118e^-5	0.218	UPSTREAM CG11659 & 1 other INTERGENIC
2L	19775365	2L_19775365_SNP [dm3] 2L_19775365_SNP [dm6]	A	T	6.128e^-5	0.218	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
3R	15603817	3R_15603817_SNP [dm3] 3R_19778095_SNP [dm6]	C	A	6.130e^-5	0.218	UPSTREAM CG11659 & 1 other INTERGENIC
2L	921904	2L_921904_SNP [dm3] 2L_921904_SNP [dm6]	T	A	6.138e^-5	0.218	UPSTREAM CG4341 INTERGENIC
2L	12231151	2L_12231151_SNP [dm3] 2L_12231151_SNP [dm6]	G	A	6.157e^-5	0.218	INTRON aret
2L	11701158	2L_11701158_SNP [dm3] 2L_11701158_SNP [dm6]	C	T	6.169e^-5	0.218	INTERGENIC
2L	16825521	2L_16825521_SNP [dm3] 2L_16825521_SNP [dm6]	G	A	6.174e^-5	0.218	SPLICE_SITE_REGION mdy UPSTREAM Cas INTRON mdy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2641246	3L_2641246_SNP [dm3] 3L_2641246_SNP [dm6]	C	T	6.180e^-5	0.218	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
2L	4163253	2L_4163253_SNP [dm3] 2L_4163253_SNP [dm6]	A	T	6.229e^-5	0.218	INTERGENIC
3R	26376380	3R_26376380_SNP [dm3] 3R_30550658_SNP [dm6]	C	T	6.239e^-5	0.218	INTRON tmod
2L	1598886	2L_1598886_SNP [dm3] 2L_1598886_SNP [dm6]	G	A	6.241e^-5	0.218	INTRON haf & 1 other
2L	4267557	2L_4267557_DEL [dm3] 2L_4267557_DEL [dm6]	ACGGA	A	6.242e^-5	0.218	INTERGENIC
2L	1343040	2L_1343040_SNP [dm3] 2L_1343040_SNP [dm6]	G	A	6.242e^-5	0.218	UPSTREAM CG33923 DOWNSTREAM CG33922 INTERGENIC
2L	5511113	2L_5511113_SNP [dm3] 2L_5511113_SNP [dm6]	T	G	6.247e^-5	0.218	INTERGENIC
2L	10144124	2L_10144124_SNP [dm3] 2L_10144124_SNP [dm6]	T	C	6.269e^-5	0.218	UPSTREAM CG4839 INTRON CG44153
X	19711664	X_19711664_SNP [dm3] X_19817631_SNP [dm6]	T	C	6.282e^-5	0.218	DOWNSTREAM skpC INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13338842	2L_13338842_SNP [dm3] 2L_13338842_SNP [dm6]	G	C	6.297e^-5	0.218	INTERGENIC
3L	5778929	3L_5778929_SNP [dm3] 3L_5785829_SNP [dm6]	T	G	6.308e^-5	0.218	INTRON Cralbp
2L	12340517	2L_12340517_SNP [dm3] 2L_12340517_SNP [dm6]	A	G	6.323e^-5	0.218	INTERGENIC
X	6282544	X_6282544_SNP [dm3] X_6388511_SNP [dm6]	G	T	6.363e^-5	0.218	INTERGENIC
3L	1111384	3L_1111384_SNP [dm3] 3L_1111384_SNP [dm6]	A	G	6.377e^-5	0.218	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12462098	2L_12462098_SNP [dm3] 2L_12462098_SNP [dm6]	A	C	6.390e^-5	0.218	UPSTREAM bun INTRON bun	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18504258	2L_18504258_SNP [dm3] 2L_18504258_SNP [dm6]	C	T	6.396e^-5	0.218	UPSTREAM kon INTERGENIC
2L	16636996	2L_16636996_SNP [dm3] 2L_16636996_SNP [dm6]	T	A	6.398e^-5	0.218	INTRON CG42389
3R	15603783	3R_15603783_SNP [dm3] 3R_19778061_SNP [dm6]	A	G	6.402e^-5	0.218	UPSTREAM CG11659 & 1 other INTERGENIC
2L	1623523	2L_1623523_SNP [dm3] 2L_1623523_SNP [dm6]	G	A	6.412e^-5	0.218	UPSTREAM CR44603 EXON CR44603
2L	6013782	2L_6013782_SNP [dm3] 2L_6013782_SNP [dm6]	C	T	6.419e^-5	0.218	NON_SYNONYMOUS_CODING H2.0	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4365480	2L_4365480_SNP [dm3] 2L_4365480_SNP [dm6]	T	C	6.422e^-5	0.218	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	1111389	3L_1111389_SNP [dm3] 3L_1111389_SNP [dm6]	T	A	6.424e^-5	0.218	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	406085	2L_406085_SNP [dm3] 2L_406085_SNP [dm6]	T	G	6.438e^-5	0.218	INTRON RpI135	TF binding site mE1_TFBS_cad
3R	10388925	3R_10388925_SNP [dm3] 3R_14563203_SNP [dm6]	A	C	6.455e^-5	0.218	DOWNSTREAM CG14851 INTERGENIC
3L	5773677	3L_5773677_SNP [dm3] 3L_5780577_SNP [dm6]	C	A	6.465e^-5	0.218	UPSTREAM Myt1 & 1 other INTRON CR45026 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14915745	3R_14915745_SNP [dm3] 3R_19090023_SNP [dm6]	C	T	6.488e^-5	0.218	INTRON cdi
2L	11396707	2L_11396707_SNP [dm3] 2L_11396707_SNP [dm6]	A	G	6.506e^-5	0.218	INTERGENIC	regulatory region REDfly_CRMs
2L	11396713	2L_11396713_INS [dm3] 2L_11396713_INS [dm6]	G	TTATTC	6.506e^-5	0.218	INTERGENIC	regulatory region REDfly_CRMs
2L	1690423	2L_1690423_SNP [dm3] 2L_1690423_SNP [dm6]	G	A	6.518e^-5	0.218	UTR_5_PRIME chinmo
2L	10557886	2L_10557886_SNP [dm3] 2L_10557886_SNP [dm6]	C	A	6.532e^-5	0.218	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11701250	2L_11701250_SNP [dm3] 2L_11701250_SNP [dm6]	G	T	6.546e^-5	0.218	INTERGENIC
2L	12828352	2L_12828352_SNP [dm3] 2L_12828352_SNP [dm6]	T	C	6.557e^-5	0.218	INTERGENIC
2L	16883240	2L_16883240_SNP [dm3] 2L_16883240_SNP [dm6]	G	C	6.580e^-5	0.218	INTRON CG31743 & 1 other
3L	15187558	3L_15187558_SNP [dm3] 3L_15194458_SNP [dm6]	A	G	6.612e^-5	0.218	INTERGENIC
X	17579625	X_17579625_SNP [dm3] X_17685592_SNP [dm6]	T	A	6.622e^-5	0.218	INTRON chas
2L	1686985	2L_1686985_SNP [dm3] 2L_1686985_SNP [dm6]	A	T	6.629e^-5	0.218	INTRON chinmo
2L	1691086	2L_1691086_SNP [dm3] 2L_1691086_SNP [dm6]	C	A	6.651e^-5	0.218	INTRON chinmo
2L	9951248	2L_9951248_SNP [dm3] 2L_9951248_SNP [dm6]	A	G	6.661e^-5	0.218	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2L	1753873	2L_1753873_SNP [dm3] 2L_1753873_SNP [dm6]	T	A	6.661e^-5	0.218	INTERGENIC
2L	12338570	2L_12338570_SNP [dm3] 2L_12338570_SNP [dm6]	C	T	6.666e^-5	0.218	UPSTREAM CG31862 INTERGENIC
2L	12258131	2L_12258131_SNP [dm3] 2L_12258131_SNP [dm6]	T	A	6.696e^-5	0.218	INTRON aret
2L	6041114	2L_6041114_SNP [dm3] 2L_6041114_SNP [dm6]	T	C	6.702e^-5	0.218	SYNONYMOUS_CODING CG31643 DOWNSTREAM ade2
2R	4417343	2R_4417343_SNP [dm3] 2R_8529838_SNP [dm6]	G	A	6.711e^-5	0.218	INTRON mtt
3R	25482044	3R_25482044_SNP [dm3] 3R_29656322_SNP [dm6]	G	T	6.716e^-5	0.218	INTRON Dop1R2
3R	15089679	3R_15089679_SNP [dm3] 3R_19263957_SNP [dm6]	A	C	6.725e^-5	0.218	INTERGENIC
2L	12340639	2L_12340639_SNP [dm3] 2L_12340639_SNP [dm6]	C	T	6.728e^-5	0.218	INTERGENIC
2L	2764124	2L_2764124_DEL [dm3] 2L_2764124_DEL [dm6]	GAACG	TTT	6.733e^-5	0.218	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
2L	12338568	2L_12338568_SNP [dm3] 2L_12338568_SNP [dm6]	G	T	6.747e^-5	0.218	UPSTREAM CG31862 INTERGENIC
2L	3764553	2L_3764553_SNP [dm3] 2L_3764553_SNP [dm6]	C	G	6.747e^-5	0.218	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4519813	2R_4519813_SNP [dm3] 2R_8632308_SNP [dm6]	T	C	6.784e^-5	0.219	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	11349517	2L_11349517_SNP [dm3] 2L_11349517_SNP [dm6]	T	A	6.817e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs
2L	1318215	2L_1318215_SNP [dm3] 2L_1318215_SNP [dm6]	C	T	6.836e^-5	0.22	INTERGENIC
2L	413351	2L_413351_SNP [dm3] 2L_413351_SNP [dm6]	G	A	6.837e^-5	0.22	UPSTREAM AP-2alpha INTRON AP-2alpha
X	2934469	X_2934469_SNP [dm3] X_3040436_SNP [dm6]	T	C	6.874e^-5	0.22	INTRON kirre
2L	1679007	2L_1679007_SNP [dm3] 2L_1679007_SNP [dm6]	G	T	6.885e^-5	0.22	INTRON chinmo
2L	1689863	2L_1689863_SNP [dm3] 2L_1689863_SNP [dm6]	C	A	6.894e^-5	0.22	INTRON chinmo
3L	12984984	3L_12984984_SNP [dm3] 3L_12991884_SNP [dm6]	A	T	6.894e^-5	0.22	INTERGENIC
2L	16637025	2L_16637025_SNP [dm3] 2L_16637025_SNP [dm6]	C	T	6.915e^-5	0.22	INTRON CG42389
2L	1687922	2L_1687922_SNP [dm3] 2L_1687922_SNP [dm6]	A	G	6.925e^-5	0.22	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1688539	2L_1688539_SNP [dm3] 2L_1688539_SNP [dm6]	A	G	6.925e^-5	0.22	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14733399	X_14733399_SNP [dm3] X_14839366_SNP [dm6]	A	C	6.966e^-5	0.22	UPSTREAM Flo2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	8582359	2L_8582359_SNP [dm3] 2L_8582359_SNP [dm6]	G	A	6.975e^-5	0.22	INTRON Sema-1a
2L	10579406	2L_10579406_SNP [dm3] 2L_10579406_SNP [dm6]	G	T	6.982e^-5	0.22	UPSTREAM CG34160 INTRON Trim9
2R	10466716	2R_10466716_SNP [dm3] 2R_14579211_SNP [dm6]	G	T	7.000e^-5	0.22	INTRON ttv
3R	11554483	3R_11554483_SNP [dm3] 3R_15728761_SNP [dm6]	C	T	7.003e^-5	0.22	INTERGENIC
2L	13916331	2L_13916331_SNP [dm3] 2L_13916331_SNP [dm6]	A	T	7.013e^-5	0.22	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3837377	2L_3837377_SNP [dm3] 2L_3837377_SNP [dm6]	C	A	7.022e^-5	0.22	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9277620	2L_9277620_SNP [dm3] 2L_9277620_SNP [dm6]	G	T	7.027e^-5	0.22	INTRON Ggamma30A
3R	15603620	3R_15603620_SNP [dm3] 3R_19777898_SNP [dm6]	T	A	7.028e^-5	0.22	UPSTREAM CG11659 & 1 other INTERGENIC
2L	14603332	2L_14603332_SNP [dm3] 2L_14603332_SNP [dm6]	C	T	7.029e^-5	0.22	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	8701090	3L_8701090_SNP [dm3] 3L_8707990_SNP [dm6]	T	G	7.055e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs
X	12221299	X_12221299_SNP [dm3] X_12327266_SNP [dm6]	A	G	7.061e^-5	0.22	INTRON Ten-a
2L	2844250	2L_2844250_SNP [dm3] 2L_2844250_SNP [dm6]	G	A	7.113e^-5	0.221	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16149213	2L_16149213_SNP [dm3] 2L_16149213_SNP [dm6]	C	T	7.127e^-5	0.221	INTERGENIC
2R	5871655	2R_5871655_SNP [dm3] 2R_9984150_SNP [dm6]	C	A	7.145e^-5	0.221	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6117684	X_6117684_SNP [dm3] X_6223651_SNP [dm6]	G	A	7.150e^-5	0.221	SYNONYMOUS_CODING sqh DOWNSTREAM Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12338495	2L_12338495_SNP [dm3] 2L_12338495_SNP [dm6]	T	A	7.152e^-5	0.221	UPSTREAM CG31862 INTERGENIC
X	14733318	X_14733318_SNP [dm3] X_14839285_SNP [dm6]	A	G	7.164e^-5	0.221	UPSTREAM Flo2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
3R	26369890	3R_26369890_SNP [dm3] 3R_30544168_SNP [dm6]	T	C	7.171e^-5	0.221	INTRON tmod
3R	21369198	3R_21369198_SNP [dm3] 3R_25543476_SNP [dm6]	T	G	7.174e^-5	0.221	INTRON msi
3R	17418250	3R_17418250_SNP [dm3] 3R_21592528_SNP [dm6]	G	A	7.228e^-5	0.222	UPSTREAM InR INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13954996	2R_13954996_SNP [dm3] 2R_18067491_SNP [dm6]	G	A	7.235e^-5	0.222	INTRON CG34386
2R	4416934	2R_4416934_SNP [dm3] 2R_8529429_SNP [dm6]	C	G	7.250e^-5	0.222	INTRON mtt
3R	15603240	3R_15603240_SNP [dm3] 3R_19777518_SNP [dm6]	G	C	7.255e^-5	0.222	UPSTREAM CG11659 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15468380	2L_15468380_SNP [dm3] 2L_15468380_SNP [dm6]	A	T	7.267e^-5	0.222	DOWNSTREAM CR45353 INTERGENIC
2L	5616611	2L_5616611_SNP [dm3] 2L_5616611_SNP [dm6]	T	A	7.282e^-5	0.222	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1700279	2L_1700279_SNP [dm3] 2L_1700279_SNP [dm6]	T	C	7.292e^-5	0.222	UTR_3_PRIME chinmo
2L	6038862	2L_6038862_SNP [dm3] 2L_6038862_SNP [dm6]	A	G	7.313e^-5	0.222	SYNONYMOUS_CODING CG31643 UPSTREAM CG9117	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	3307121	2R_3307121_SNP [dm3] 2R_7419616_SNP [dm6]	A	C	7.330e^-5	0.222	UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4193969	2L_4193969_SNP [dm3] 2L_4193969_SNP [dm6]	A	T	7.335e^-5	0.222	INTRON CG3714	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	19192867	2R_19192867_SNP [dm3] 2R_23305344_SNP [dm6]	C	T	7.372e^-5	0.223	INTERGENIC
2L	12889487	2L_12889487_SNP [dm3] 2L_12889487_SNP [dm6]	T	C	7.396e^-5	0.223	INTERGENIC
2L	12889506	2L_12889506_SNP [dm3] 2L_12889506_SNP [dm6]	G	A	7.396e^-5	0.223	INTERGENIC
2L	3534347	2L_3534347_SNP [dm3] 2L_3534347_SNP [dm6]	C	G	7.443e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9216297	2R_9216297_SNP [dm3] 2R_13328792_SNP [dm6]	G	A	7.462e^-5	0.224	DOWNSTREAM CR44206 & 1 other INTERGENIC
2L	15965886	2L_15965886_SNP [dm3] 2L_15965886_SNP [dm6]	G	C	7.502e^-5	0.224	INTERGENIC
3R	4132100	3R_4132100_SNP [dm3] 3R_8306378_SNP [dm6]	A	T	7.505e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	1198965	2L_1198965_SNP [dm3] 2L_1198965_SNP [dm6]	A	G	7.518e^-5	0.224	SYNONYMOUS_CODING CG5139 UPSTREAM CG43348
2R	16953548	2R_16953548_SNP [dm3] 2R_21066043_SNP [dm6]	G	A	7.528e^-5	0.224	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14233033	X_14233033_SNP [dm3] X_14339000_SNP [dm6]	A	T	7.533e^-5	0.224	INTRON dpr8
2L	7999748	2L_7999748_INS [dm3] 2L_7999748_INS [dm6]	A	ATT	7.541e^-5	0.224	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
2L	1621247	2L_1621247_SNP [dm3] 2L_1621247_SNP [dm6]	A	G	7.603e^-5	0.225	EXON CR44603	TF binding site BDTNP1_TFBS_dl
2L	12643116	2L_12643116_SNP [dm3] 2L_12643116_SNP [dm6]	C	T	7.605e^-5	0.225	INTRON Ref2
3R	12931608	3R_12931608_SNP [dm3] 3R_17105886_SNP [dm6]	A	G	7.661e^-5	0.225	INTRON cher	TF binding site mE1_TFBS_cad
2R	10097301	2R_10097301_SNP [dm3] 2R_14209796_SNP [dm6]	G	A	7.664e^-5	0.225	INTRON Sox15	regulatory region REDfly_CRMs
2L	10150034	2L_10150034_DEL [dm3] 2L_10150034_DEL [dm6]	AT	A	7.674e^-5	0.225	INTRON CG44153 & 1 other
3L	13777027	3L_13777027_SNP [dm3] 3L_13783927_SNP [dm6]	G	A	7.676e^-5	0.225	INTRON bru-3
2L	11173929	2L_11173929_SNP [dm3] 2L_11173929_SNP [dm6]	G	T	7.677e^-5	0.225	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3R	23886923	3R_23886923_SNP [dm3] 3R_28061201_SNP [dm6]	G	T	7.687e^-5	0.225	INTRON CG34362
X	6116895	X_6116895_SNP [dm3] X_6222862_SNP [dm6]	C	T	7.696e^-5	0.225	DOWNSTREAM sqh & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	18288726	3L_18288726_SNP [dm3] 3L_18295626_SNP [dm6]	C	T	7.795e^-5	0.228	EXON CR43306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	20606155	3R_20606155_SNP [dm3] 3R_24780433_SNP [dm6]	T	G	7.808e^-5	0.228	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21235755	3R_21235755_SNP [dm3] 3R_25410033_SNP [dm6]	G	A	7.811e^-5	0.228	INTRON Fur1
3L	16876680	3L_16876680_SNP [dm3] 3L_16883580_SNP [dm6]	A	T	7.831e^-5	0.228	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16876681	3L_16876681_SNP [dm3] 3L_16883581_SNP [dm6]	G	A	7.835e^-5	0.228	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3194376	2R_3194376_SNP [dm3] 2R_7306871_SNP [dm6]	G	T	7.859e^-5	0.228	INTERGENIC
2L	3238709	2L_3238709_SNP [dm3] 2L_3238709_SNP [dm6]	C	T	7.884e^-5	0.228	INTERGENIC
2L	879206	2L_879206_SNP [dm3] 2L_879206_SNP [dm6]	C	A	7.893e^-5	0.228	SYNONYMOUS_CODING CG15824 DOWNSTREAM ninaA	TF binding site mE1_TFBS_cad
2L	1343423	2L_1343423_SNP [dm3] 2L_1343423_SNP [dm6]	T	C	7.913e^-5	0.228	UPSTREAM Cdlc2 DOWNSTREAM CG33922 INTERGENIC
2L	2978081	2L_2978081_SNP [dm3] 2L_2978081_SNP [dm6]	A	T	7.919e^-5	0.228	NON_SYNONYMOUS_CODING CG3165 DOWNSTREAM CG9643
X	4989579	X_4989579_SNP [dm3] X_5095546_SNP [dm6]	C	T	7.952e^-5	0.229	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3527252	2L_3527252_SNP [dm3] 2L_3527252_SNP [dm6]	A	T	7.976e^-5	0.229	DOWNSTREAM Spindly INTRON CG8852	TF binding site mE1_TFBS_HSA
3R	22449919	3R_22449919_SNP [dm3] 3R_26624197_SNP [dm6]	A	T	8.003e^-5	0.23	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
X	11561993	X_11561993_SNP [dm3] X_11667960_SNP [dm6]	T	A	8.056e^-5	0.231	INTRON Ptp10D
2L	13646532	2L_13646532_SNP [dm3] 2L_13646532_SNP [dm6]	A	T	8.088e^-5	0.232	INTERGENIC
2L	3311734	2L_3311734_SNP [dm3] 2L_3311734_SNP [dm6]	C	G	8.100e^-5	0.232	DOWNSTREAM CG15406 INTRON CG3277
2L	10150042	2L_10150042_SNP [dm3] 2L_10150042_SNP [dm6]	G	T	8.151e^-5	0.232	INTRON CG44153 & 1 other
2L	12798247	2L_12798247_SNP [dm3] 2L_12798247_SNP [dm6]	T	C	8.154e^-5	0.232	INTERGENIC
3L	12042643	3L_12042643_SNP [dm3] 3L_12049543_SNP [dm6]	T	A	8.185e^-5	0.233	INTRON rols
2L	2003313	2L_2003313_SNP [dm3] 2L_2003313_SNP [dm6]	C	A	8.222e^-5	0.233	INTRON CR43464 & 1 other
2L	4365227	2L_4365227_SNP [dm3] 2L_4365227_SNP [dm6]	G	A	8.225e^-5	0.233	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	12514453	2L_12514453_SNP [dm3] 2L_12514453_SNP [dm6]	A	C	8.250e^-5	0.233	INTRON bun
3R	20631455	3R_20631455_SNP [dm3] 3R_24805733_SNP [dm6]	G	T	8.250e^-5	0.233	UTR_3_PRIME CG5807 UPSTREAM polybromo INTRON CG5807	TF binding site BDTNP1_TFBS_dl
X	13830850	X_13830850_SNP [dm3] X_13936817_SNP [dm6]	T	C	8.257e^-5	0.233	INTRON mamo
3L	12470816	3L_12470816_SNP [dm3] 3L_12477716_SNP [dm6]	G	T	8.265e^-5	0.233	INTRON CG10663
2R	424504	2R_424504_SNP [dm3] 2R_4536999_SNP [dm6]	C	A	8.281e^-5	0.233	INTERGENIC	transposable element FlyBase
2L	10716375	2L_10716375_SNP [dm3] 2L_10716375_SNP [dm6]	T	C	8.307e^-5	0.234	INTERGENIC
2L	401313	2L_401313_SNP [dm3] 2L_401313_SNP [dm6]	T	G	8.359e^-5	0.234	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
3R	25322004	3R_25322004_INS [dm3] 3R_29496282_INS [dm6]	C	CACTTCATCA	8.380e^-5	0.234	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4391535	2L_4391535_SNP [dm3] 2L_4391535_SNP [dm6]	A	G	8.391e^-5	0.234	SYNONYMOUS_CODING Tps1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3765084	2L_3765084_SNP [dm3] 2L_3765084_SNP [dm6]	T	C	8.394e^-5	0.234	UPSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_cad
2L	10731463	2L_10731463_SNP [dm3] 2L_10731463_SNP [dm6]	T	A	8.414e^-5	0.234	UTR_3_PRIME CG6750 DOWNSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12352995	2L_12352995_SNP [dm3] 2L_12352995_SNP [dm6]	T	C	8.425e^-5	0.234	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	12353059	2L_12353059_SNP [dm3] 2L_12353059_SNP [dm6]	A	T	8.425e^-5	0.234	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	10069477	2L_10069477_SNP [dm3] 2L_10069477_SNP [dm6]	T	G	8.452e^-5	0.235	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2L	19703440	2L_19703440_SNP [dm3] 2L_19703440_SNP [dm6]	G	C	8.476e^-5	0.235	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16990498	3R_16990498_SNP [dm3] 3R_21164776_SNP [dm6]	C	A	8.539e^-5	0.236	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
2L	4247490	2L_4247490_SNP [dm3] 2L_4247490_SNP [dm6]	C	A	8.542e^-5	0.236	INTRON CR44059
2L	13989124	2L_13989124_SNP [dm3] 2L_13989124_SNP [dm6]	G	A	8.609e^-5	0.238	INTRON rk
3L	17740307	3L_17740307_SNP [dm3] 3L_17747207_SNP [dm6]	A	G	8.643e^-5	0.238	UPSTREAM CG6034 INTRON Ccn
3L	1771683	3L_1771683_SNP [dm3] 3L_1771683_SNP [dm6]	A	G	8.673e^-5	0.238	UTR_5_PRIME Dhc62B DOWNSTREAM CG13933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2L	18957934	2L_18957934_SNP [dm3] 2L_18957934_SNP [dm6]	T	G	8.680e^-5	0.238	UTR_3_PRIME Nak UPSTREAM CG10623
2L	401622	2L_401622_SNP [dm3] 2L_401622_SNP [dm6]	T	C	8.683e^-5	0.238	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
3L	17049522	3L_17049522_SNP [dm3] 3L_17056422_SNP [dm6]	A	C	8.685e^-5	0.238	DOWNSTREAM rogdi INTRON CG7724	TF binding site mE1_TFBS_cnc
3L	12050241	3L_12050241_SNP [dm3] 3L_12057141_SNP [dm6]	T	A	8.713e^-5	0.238	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3311728	2L_3311728_DEL [dm3] 2L_3311728_DEL [dm6]	AC	A	8.731e^-5	0.238	DOWNSTREAM CG15406 INTRON CG3277
2L	10579967	2L_10579967_SNP [dm3] 2L_10579967_SNP [dm6]	A	C	8.757e^-5	0.238	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
2L	2380298	2L_2380298_SNP [dm3] 2L_2380298_SNP [dm6]	A	T	8.787e^-5	0.238	UTR_3_PRIME Atxn7 UPSTREAM Eogt DOWNSTREAM Atxn7	TF binding site BDTNP1_TFBS_dl
2L	6579784	2L_6579784_SNP [dm3] 2L_6579784_SNP [dm6]	C	A	8.823e^-5	0.238	INTRON CG11319
3L	2896892	3L_2896892_SNP [dm3] 3L_2896892_SNP [dm6]	C	A	8.828e^-5	0.238	INTRON Shab	TF binding site mE1_TFBS_Trl
2L	10579729	2L_10579729_SNP [dm3] 2L_10579729_SNP [dm6]	A	C	8.830e^-5	0.238	UPSTREAM CG34160 INTRON Trim9
2R	1630199	2R_1630199_SNP [dm3] 2R_5742694_SNP [dm6]	T	G	8.835e^-5	0.238	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	4418202	2L_4418202_SNP [dm3] 2L_4418202_SNP [dm6]	C	G	8.841e^-5	0.238	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	7260218	2L_7260218_DEL [dm3] 2L_7260218_DEL [dm6]	TT	T	8.844e^-5	0.238	INTRON Wnt4
2L	2380812	2L_2380812_SNP [dm3] 2L_2380812_SNP [dm6]	C	A	8.875e^-5	0.238	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9685422	3R_9685422_SNP [dm3] 3R_13859700_SNP [dm6]	C	T	8.912e^-5	0.238	INTERGENIC
2R	9212629	2R_9212629_SNP [dm3] 2R_13325124_SNP [dm6]	T	C	8.917e^-5	0.238	INTERGENIC
2R	9213421	2R_9213421_SNP [dm3] 2R_13325916_SNP [dm6]	T	G	8.917e^-5	0.238	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1415012	3L_1415012_SNP [dm3] 3L_1415012_SNP [dm6]	T	C	8.930e^-5	0.238	INTRON Ptp61F
2L	6021932	2L_6021932_SNP [dm3] 2L_6021932_SNP [dm6]	A	T	8.935e^-5	0.238	DOWNSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7485671	2L_7485671_SNP [dm3] 2L_7485671_SNP [dm6]	A	T	8.947e^-5	0.238	INTRON Ziz
3R	15630178	3R_15630178_SNP [dm3] 3R_19804456_SNP [dm6]	C	G	8.964e^-5	0.238	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15633266	3R_15633266_SNP [dm3] 3R_19807544_SNP [dm6]	G	T	8.964e^-5	0.238	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10389178	3R_10389178_SNP [dm3] 3R_14563456_SNP [dm6]	T	C	8.965e^-5	0.238	DOWNSTREAM CG14851 & 1 other INTERGENIC
2L	410005	2L_410005_SNP [dm3] 2L_410005_SNP [dm6]	C	A	8.966e^-5	0.238	SYNONYMOUS_CODING AP-2alpha	TF binding site mE1_TFBS_cad
2R	9491703	2R_9491703_SNP [dm3] 2R_13604198_SNP [dm6]	C	A	8.967e^-5	0.238	DOWNSTREAM CG34236 INTERGENIC
3R	9686824	3R_9686824_SNP [dm3] 3R_13861102_SNP [dm6]	C	T	8.980e^-5	0.238	INTERGENIC
2L	1635163	2L_1635163_SNP [dm3] 2L_1635163_SNP [dm6]	T	A	9.046e^-5	0.239	INTERGENIC
2L	11362310	2L_11362310_SNP [dm3] 2L_11362310_SNP [dm6]	G	A	9.053e^-5	0.239	INTRON salr	regulatory region REDfly_CRMs
2L	4036126	2L_4036126_SNP [dm3] 2L_4036126_SNP [dm6]	T	C	9.067e^-5	0.239	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	2381651	2L_2381651_SNP [dm3] 2L_2381651_SNP [dm6]	G	A	9.119e^-5	0.24	SYNONYMOUS_CODING Eogt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14982700	3L_14982700_SNP [dm3] 3L_14989600_SNP [dm6]	A	T	9.126e^-5	0.24	INTRON mnd	TF binding site BDTNP1_TFBS_da
3R	10389183	3R_10389183_SNP [dm3] 3R_14563461_SNP [dm6]	A	T	9.138e^-5	0.24	DOWNSTREAM CG14851 & 1 other INTERGENIC
3R	15625068	3R_15625068_SNP [dm3] 3R_19799346_SNP [dm6]	A	G	9.166e^-5	0.24	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8808419	X_8808419_INS [dm3] X_8914386_INS [dm6]	C	CCCACC	9.183e^-5	0.24	INTRON rdgA
3R	20632061	3R_20632061_SNP [dm3] 3R_24806339_SNP [dm6]	C	A	9.188e^-5	0.24	UTR_3_PRIME CG5807 INTRON CG5807
2L	9835568	2L_9835568_SNP [dm3] 2L_9835568_SNP [dm6]	A	T	9.196e^-5	0.24	INTRON nAChRalpha6
3R	25533812	3R_25533812_SNP [dm3] 3R_29708090_SNP [dm6]	G	A	9.215e^-5	0.241	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12671677	2R_12671677_SNP [dm3] 2R_16784172_SNP [dm6]	G	A	9.234e^-5	0.241	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	540436	3R_540436_SNP [dm3] 3R_4714714_SNP [dm6]	T	C	9.237e^-5	0.241	UPSTREAM CG9769 INTERGENIC	transposable element FlyBase
2L	6188048	2L_6188048_SNP [dm3] 2L_6188048_SNP [dm6]	G	T	9.249e^-5	0.241	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10389221	3R_10389221_SNP [dm3] 3R_14563499_SNP [dm6]	T	G	9.295e^-5	0.241	DOWNSTREAM CG14851 & 1 other INTERGENIC
3L	4929907	3L_4929907_INS [dm3] 3L_4929907_INS [dm6]	T	TGAATAATGATACGGAATAC...	9.299e^-5	0.241	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929910	3L_4929910_SNP [dm3] 3L_4929910_SNP [dm6]	T	A	9.299e^-5	0.241	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	2726603	3L_2726603_SNP [dm3] 3L_2726603_SNP [dm6]	C	A	9.313e^-5	0.241	INTRON Mrtf
2L	752071	2L_752071_SNP [dm3] 2L_752071_SNP [dm6]	G	C	9.325e^-5	0.241	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3R	15592722	3R_15592722_SNP [dm3] 3R_19767000_SNP [dm6]	A	T	9.330e^-5	0.241	INTRON GluClalpha
2L	16046542	2L_16046542_SNP [dm3] 2L_16046542_SNP [dm6]	G	T	9.362e^-5	0.241	INTRON BicC & 1 other
X	21175114	X_21175114_SNP [dm3] X_21304087_SNP [dm6]	T	A	9.381e^-5	0.241	UPSTREAM tRNA:CR32525 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	18288735	3L_18288735_SNP [dm3] 3L_18295635_SNP [dm6]	G	A	9.386e^-5	0.241	EXON CR43306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	9209044	2R_9209044_SNP [dm3] 2R_13321539_SNP [dm6]	G	A	9.442e^-5	0.242	INTERGENIC
2R	4420818	2R_4420818_SNP [dm3] 2R_8533313_SNP [dm6]	T	A	9.475e^-5	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5773672	3L_5773672_SNP [dm3] 3L_5780572_SNP [dm6]	A	G	9.476e^-5	0.242	UPSTREAM Myt1 & 1 other INTRON CR45026 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5959486	2L_5959486_SNP [dm3] 2L_5959486_SNP [dm6]	G	T	9.479e^-5	0.242	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	19789379	2L_19789379_SNP [dm3] 2L_19789379_SNP [dm6]	A	G	9.479e^-5	0.242	INTRON CdGAPr
2L	10553989	2L_10553989_INS [dm3] 2L_10553989_INS [dm6]	A	ACA	9.499e^-5	0.242	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4420844	2R_4420844_SNP [dm3] 2R_8533339_SNP [dm6]	G	A	9.500e^-5	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22449610	3R_22449610_SNP [dm3] 3R_26623888_SNP [dm6]	A	C	9.550e^-5	0.243	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2L	1057177	2L_1057177_SNP [dm3] 2L_1057177_SNP [dm6]	C	A	9.564e^-5	0.243	INTRON S	TF binding site mE1_TFBS_sens
2L	19918376	2L_19918376_SNP [dm3] 2L_19918376_SNP [dm6]	G	T	9.574e^-5	0.243	UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	10061552	2L_10061552_SNP [dm3] 2L_10061552_SNP [dm6]	A	T	9.586e^-5	0.243	INTRON Spn31A
3R	21159500	3R_21159500_SNP [dm3] 3R_25333778_SNP [dm6]	A	T	9.628e^-5	0.243	SYNONYMOUS_CODING CG10669	TF binding site mE1_TFBS_sens
2L	12892608	2L_12892608_SNP [dm3] 2L_12892608_SNP [dm6]	T	A	9.655e^-5	0.244	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11907126	2L_11907126_SNP [dm3] 2L_11907126_SNP [dm6]	C	T	9.673e^-5	0.244	INTRON Pde1c
2L	766885	2L_766885_SNP [dm3] 2L_766885_SNP [dm6]	T	A	9.710e^-5	0.244	INTERGENIC
2R	3260366	2R_3260366_SNP [dm3] 2R_7372861_SNP [dm6]	G	A	9.723e^-5	0.244	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10388786	3R_10388786_SNP [dm3] 3R_14563064_SNP [dm6]	C	T	9.727e^-5	0.244	DOWNSTREAM CG14851 INTERGENIC
3R	11136542	3R_11136542_SNP [dm3] 3R_15310820_SNP [dm6]	T	C	9.736e^-5	0.244	UTR_5_PRIME Tm2 INTRON Tm2	regulatory region REDfly_CRMs
2L	3764721	2L_3764721_SNP [dm3] 2L_3764721_SNP [dm6]	T	C	9.746e^-5	0.244	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11237791	2L_11237791_SNP [dm3] 2L_11237791_SNP [dm6]	A	T	9.755e^-5	0.244	INTRON ab
3L	11756563	3L_11756563_SNP [dm3] 3L_11763463_SNP [dm6]	G	A	9.756e^-5	0.244	INTRON CG6024
3R	26369009	3R_26369009_SNP [dm3] 3R_30543287_SNP [dm6]	C	A	9.800e^-5	0.244	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2913780	2L_2913780_INS [dm3] 2L_2913780_INS [dm6]	T	TGT	9.826e^-5	0.244	INTRON lilli
2L	1696963	2L_1696963_SNP [dm3] 2L_1696963_SNP [dm6]	T	A	9.841e^-5	0.244	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA
2L	12403827	2L_12403827_SNP [dm3] 2L_12403827_SNP [dm6]	A	G	9.845e^-5	0.244	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10760096	2L_10760096_SNP [dm3] 2L_10760096_SNP [dm6]	T	C	9.849e^-5	0.244	INTERGENIC
2L	3876168	2L_3876168_SNP [dm3] 2L_3876168_SNP [dm6]	G	A	9.854e^-5	0.244	INTRON capu
3R	10389204	3R_10389204_SNP [dm3] 3R_14563482_SNP [dm6]	A	G	9.874e^-5	0.244	DOWNSTREAM CG14851 & 1 other INTERGENIC
2L	1586265	2L_1586265_SNP [dm3] 2L_1586265_SNP [dm6]	T	C	9.878e^-5	0.244	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna
3L	12470813	3L_12470813_SNP [dm3] 3L_12477713_SNP [dm6]	T	A	9.880e^-5	0.244	INTRON CG10663
3R	7367117	3R_7367117_SNP [dm3] 3R_11541395_SNP [dm6]	C	T	9.886e^-5	0.244	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	12790241	2L_12790241_SNP [dm3] 2L_12790241_SNP [dm6]	C	T	9.927e^-5	0.244	INTERGENIC
2L	16171802	2L_16171802_SNP [dm3] 2L_16171802_SNP [dm6]	G	C	9.937e^-5	0.244	INTRON Ca-alpha1D
2L	12751277	2L_12751277_SNP [dm3] 2L_12751277_SNP [dm6]	T	G	9.939e^-5	0.244	INTERGENIC
3R	9709337	3R_9709337_SNP [dm3] 3R_13883615_SNP [dm6]	C	T	9.959e^-5	0.244	INTERGENIC
2L	11600015	2L_11600015_SNP [dm3] 2L_11600015_SNP [dm6]	G	A	9.975e^-5	0.244	INTRON kek2
2L	11600022	2L_11600022_SNP [dm3] 2L_11600022_SNP [dm6]	C	T	9.975e^-5	0.244	INTRON kek2
2L	5959483	2L_5959483_SNP [dm3] 2L_5959483_SNP [dm6]	T	C	1.001e^-4	0.244	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	3765083	2L_3765083_SNP [dm3] 2L_3765083_SNP [dm6]	G	A	1.007e^-4	0.246	UPSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_cad
3R	400199	3R_400199_SNP [dm3] 3R_4574477_SNP [dm6]	A	T	1.011e^-4	0.246	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13956412	2R_13956412_SNP [dm3] 2R_18068907_SNP [dm6]	G	A	1.017e^-4	0.247	INTRON CG34386
X	7004304	X_7004304_SNP [dm3] X_7110271_SNP [dm6]	G	T	1.018e^-4	0.247	UTR_5_PRIME fz4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9684685	3R_9684685_SNP [dm3] 3R_13858963_SNP [dm6]	G	C	1.023e^-4	0.248	INTERGENIC
2L	1057187	2L_1057187_SNP [dm3] 2L_1057187_SNP [dm6]	G	A	1.024e^-4	0.248	INTRON S	TF binding site mE1_TFBS_sens
2R	11628843	2R_11628843_SNP [dm3] 2R_15741338_SNP [dm6]	G	T	1.024e^-4	0.248	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2111040	2L_2111040_SNP [dm3] 2L_2111040_SNP [dm6]	A	C	1.026e^-4	0.248	INTERGENIC
2L	19915495	2L_19915495_SNP [dm3] 2L_19915495_SNP [dm6]	G	A	1.032e^-4	0.249	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2806114	2L_2806114_SNP [dm3] 2L_2806114_SNP [dm6]	T	C	1.033e^-4	0.249	INTRON daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6498561	3L_6498561_SNP [dm3] 3L_6505461_SNP [dm6]	G	T	1.034e^-4	0.249	INTRON sfl
3R	20957909	3R_20957909_SNP [dm3] 3R_25132187_SNP [dm6]	C	A	1.036e^-4	0.249	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3551791	3L_3551791_SNP [dm3] 3L_3551791_SNP [dm6]	A	T	1.036e^-4	0.249	INTRON Eip63E
3R	21725583	3R_21725583_SNP [dm3] 3R_25899861_SNP [dm6]	G	T	1.041e^-4	0.249	UPSTREAM CG31091 DOWNSTREAM MCO3 INTERGENIC
2L	3158506	2L_3158506_SNP [dm3] 2L_3158506_SNP [dm6]	T	C	1.041e^-4	0.249	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	2762603	2L_2762603_SNP [dm3] 2L_2762603_SNP [dm6]	A	G	1.042e^-4	0.249	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15603127	3R_15603127_SNP [dm3] 3R_19777405_SNP [dm6]	C	T	1.042e^-4	0.249	UPSTREAM CG11659 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11396663	2L_11396663_SNP [dm3] 2L_11396663_SNP [dm6]	C	T	1.047e^-4	0.249	INTERGENIC	regulatory region REDfly_CRMs
2R	18497926	2R_18497926_SNP [dm3] 2R_22610421_SNP [dm6]	G	A	1.048e^-4	0.249	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11951923	2L_11951923_SNP [dm3] 2L_11951923_SNP [dm6]	G	T	1.048e^-4	0.249	DOWNSTREAM CR43314 INTERGENIC
3R	21680788	3R_21680788_SNP [dm3] 3R_25855066_SNP [dm6]	A	G	1.049e^-4	0.249	INTERGENIC
2L	2918065	2L_2918065_SNP [dm3] 2L_2918065_SNP [dm6]	G	A	1.052e^-4	0.25	INTRON lilli
2R	4417096	2R_4417096_SNP [dm3] 2R_8529591_SNP [dm6]	C	G	1.055e^-4	0.25	INTRON mtt	transposable element FlyBase
2R	8701411	2R_8701411_SNP [dm3] 2R_12813906_SNP [dm6]	A	G	1.057e^-4	0.25	INTERGENIC
3R	17348130	3R_17348130_SNP [dm3] 3R_21522408_SNP [dm6]	A	T	1.057e^-4	0.25	INTRON CG7956
2L	3958478	2L_3958478_SNP [dm3] 2L_3958478_SNP [dm6]	G	A	1.060e^-4	0.25	INTRON fred
2R	19297676	2R_19297676_SNP [dm3] 2R_23410153_SNP [dm6]	G	T	1.060e^-4	0.25	INTERGENIC
3R	21691517	3R_21691517_SNP [dm3] 3R_25865795_SNP [dm6]	G	A	1.060e^-4	0.25	INTRON CG5890
2L	7471433	2L_7471433_SNP [dm3] 2L_7471433_SNP [dm6]	T	A	1.061e^-4	0.25	INTRON CG6055
3R	346269	3R_346269_SNP [dm3] 3R_4520547_SNP [dm6]	T	A	1.062e^-4	0.25	INTRON CG34357
2R	14177593	2R_14177593_DEL [dm3] 2R_18290088_DEL [dm6]	GG	G	1.064e^-4	0.25	INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	18358080	2R_18358080_SNP [dm3] 2R_22470575_SNP [dm6]	A	C	1.066e^-4	0.25	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2L	3546346	2L_3546346_SNP [dm3] 2L_3546346_SNP [dm6]	A	G	1.071e^-4	0.251	INTRON drm	TF binding site BDTNP1_TFBS_dl
2L	727735	2L_727735_SNP [dm3] 2L_727735_SNP [dm6]	A	G	1.075e^-4	0.251	UPSTREAM Hsp60B INTERGENIC
2L	9378776	2L_9378776_SNP [dm3] 2L_9378776_SNP [dm6]	T	A	1.078e^-4	0.252	INTRON Shawl
3R	21725584	3R_21725584_SNP [dm3] 3R_25899862_SNP [dm6]	G	A	1.082e^-4	0.252	UPSTREAM CG31091 DOWNSTREAM MCO3 INTERGENIC
2L	19562468	2L_19562468_SNP [dm3] 2L_19562468_SNP [dm6]	A	G	1.083e^-4	0.252	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_sens
3R	15601099	3R_15601099_SNP [dm3] 3R_19775377_SNP [dm6]	A	C	1.084e^-4	0.252	DOWNSTREAM CG11659 & 1 other INTERGENIC
3R	25482457	3R_25482457_SNP [dm3] 3R_29656735_SNP [dm6]	T	C	1.085e^-4	0.252	INTRON Dop1R2
2L	11396681	2L_11396681_SNP [dm3] 2L_11396681_SNP [dm6]	G	C	1.087e^-4	0.252	INTERGENIC	regulatory region REDfly_CRMs
2L	11396696	2L_11396696_SNP [dm3] 2L_11396696_SNP [dm6]	G	C	1.087e^-4	0.252	INTERGENIC	regulatory region REDfly_CRMs
2L	11396706	2L_11396706_SNP [dm3] 2L_11396706_SNP [dm6]	A	T	1.087e^-4	0.252	INTERGENIC	regulatory region REDfly_CRMs
2L	10047206	2L_10047206_SNP [dm3] 2L_10047206_SNP [dm6]	A	G	1.088e^-4	0.252	INTERGENIC
X	4840326	X_4840326_INS [dm3] X_4946293_INS [dm6]	T	TCACCAGATTTATGCAAT...	1.090e^-4	0.252	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17077193	2L_17077193_SNP [dm3] 2L_17077193_SNP [dm6]	G	C	1.092e^-4	0.252	INTERGENIC
2L	878443	2L_878443_SNP [dm3] 2L_878443_SNP [dm6]	C	T	1.093e^-4	0.252	SYNONYMOUS_CODING CG15824 DOWNSTREAM ninaA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1057188	2L_1057188_SNP [dm3] 2L_1057188_SNP [dm6]	A	T	1.097e^-4	0.252	INTRON S	TF binding site mE1_TFBS_sens
2L	2003548	2L_2003548_SNP [dm3] 2L_2003548_SNP [dm6]	G	A	1.099e^-4	0.252	INTRON CG33543 EXON CR43464
3L	17124062	3L_17124062_SNP [dm3] 3L_17130962_SNP [dm6]	A	G	1.099e^-4	0.252	INTRON Rbp6
3L	6498627	3L_6498627_SNP [dm3] 3L_6505527_SNP [dm6]	G	A	1.100e^-4	0.252	INTRON sfl
2R	3046514	2R_3046514_SNP [dm3] 2R_7159009_SNP [dm6]	C	A	1.105e^-4	0.253	UPSTREAM nec INTRON pk	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2L	737055	2L_737055_SNP [dm3] 2L_737055_SNP [dm6]	G	A	1.111e^-4	0.254	DOWNSTREAM Eaat2 INTERGENIC
2L	13327364	2L_13327364_SNP [dm3] 2L_13327364_SNP [dm6]	T	C	1.111e^-4	0.254	INTRON CG43778
2L	3907815	2L_3907815_SNP [dm3] 2L_3907815_SNP [dm6]	T	G	1.119e^-4	0.255	INTRON fred
3L	2734983	3L_2734983_SNP [dm3] 3L_2734983_SNP [dm6]	C	A	1.120e^-4	0.255	UPSTREAM Mrtf INTRON Mrtf
2L	4354907	2L_4354907_SNP [dm3] 2L_4354907_SNP [dm6]	G	A	1.120e^-4	0.255	DOWNSTREAM CG15429 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8854663	2L_8854663_SNP [dm3] 2L_8854663_SNP [dm6]	A	G	1.122e^-4	0.255	INTERGENIC
3R	26342699	3R_26342699_SNP [dm3] 3R_30516977_SNP [dm6]	G	A	1.122e^-4	0.255	DOWNSTREAM jdp & 1 other INTERGENIC
3L	13593193	3L_13593193_SNP [dm3] 3L_13600093_SNP [dm6]	A	T	1.123e^-4	0.255	DOWNSTREAM CR45120 INTRON bru-3
3R	9709398	3R_9709398_INS [dm3] 3R_13883676_INS [dm6]	G	GG	1.128e^-4	0.255	INTERGENIC
2L	11396690	2L_11396690_SNP [dm3] 2L_11396690_SNP [dm6]	C	T	1.132e^-4	0.256	INTERGENIC	regulatory region REDfly_CRMs
3L	3782831	3L_3782831_SNP [dm3] 3L_3782831_SNP [dm6]	A	G	1.134e^-4	0.256	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1483157	3L_1483157_SNP [dm3] 3L_1483157_SNP [dm6]	G	A	1.136e^-4	0.256	INTRON stet	TF binding site mE1_TFBS_cad
2R	4417520	2R_4417520_SNP [dm3] 2R_8530015_SNP [dm6]	G	A	1.146e^-4	0.258	INTRON mtt
2L	2427176	2L_2427176_SNP [dm3] 2L_2427176_SNP [dm6]	C	T	1.150e^-4	0.259	EXON CR44912
2L	11600062	2L_11600062_SNP [dm3] 2L_11600062_SNP [dm6]	C	A	1.153e^-4	0.259	INTRON kek2
2L	402078	2L_402078_SNP [dm3] 2L_402078_SNP [dm6]	C	G	1.154e^-4	0.259	UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	18689105	3R_18689105_SNP [dm3] 3R_22863383_SNP [dm6]	T	C	1.159e^-4	0.26	INTERGENIC
3R	10389133	3R_10389133_SNP [dm3] 3R_14563411_SNP [dm6]	A	G	1.165e^-4	0.261	DOWNSTREAM CG14851 & 1 other INTERGENIC
2R	11609519	2R_11609519_SNP [dm3] 2R_15722014_SNP [dm6]	G	A	1.168e^-4	0.261	INTERGENIC
3R	15603262	3R_15603262_SNP [dm3] 3R_19777540_SNP [dm6]	A	G	1.172e^-4	0.262	UPSTREAM CG11659 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23843007	3R_23843007_SNP [dm3] 3R_28017285_SNP [dm6]	C	A	1.180e^-4	0.263	INTERGENIC
3R	17346230	3R_17346230_SNP [dm3] 3R_21520508_SNP [dm6]	T	C	1.180e^-4	0.263	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	15268839	3L_15268839_SNP [dm3] 3L_15275739_SNP [dm6]	A	T	1.181e^-4	0.263	INTERGENIC
3R	27350786	3R_27350786_SNP [dm3] 3R_31525064_SNP [dm6]	T	G	1.181e^-4	0.263	INTERGENIC
3R	9709317	3R_9709317_SNP [dm3] 3R_13883595_SNP [dm6]	T	C	1.184e^-4	0.263	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4388070	2L_4388070_SNP [dm3] 2L_4388070_SNP [dm6]	A	T	1.191e^-4	0.264	UPSTREAM Psf2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4416978	2R_4416978_SNP [dm3] 2R_8529473_SNP [dm6]	A	T	1.194e^-4	0.264	INTRON mtt
2R	4417011	2R_4417011_SNP [dm3] 2R_8529506_SNP [dm6]	C	T	1.194e^-4	0.264	INTRON mtt
3L	16379635	3L_16379635_DEL [dm3] 3L_16386535_DEL [dm6]	AT	C	1.196e^-4	0.264	UTR_5_PRIME RAF2 UPSTREAM CG4729 INTRON RAF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12140356	2L_12140356_SNP [dm3] 2L_12140356_SNP [dm6]	A	T	1.197e^-4	0.264	UTR_3_PRIME Gr33a
2L	4355549	2L_4355549_SNP [dm3] 2L_4355549_SNP [dm6]	C	A	1.198e^-4	0.264	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1664669	2L_1664669_SNP [dm3] 2L_1664669_SNP [dm6]	T	A	1.201e^-4	0.264	INTRON chinmo
2R	6077111	2R_6077111_SNP [dm3] 2R_10189606_SNP [dm6]	A	G	1.201e^-4	0.264	INTRON KCNQ
2L	19775385	2L_19775385_SNP [dm3] 2L_19775385_SNP [dm6]	C	T	1.202e^-4	0.264	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
2L	17807570	2L_17807570_SNP [dm3] 2L_17807570_SNP [dm6]	T	C	1.202e^-4	0.264	INTRON CadN2
2L	10114604	2L_10114604_SNP [dm3] 2L_10114604_SNP [dm6]	A	G	1.202e^-4	0.264	INTRON CG44153 & 1 other
2L	12999423	2L_12999423_SNP [dm3] 2L_12999423_SNP [dm6]	A	T	1.209e^-4	0.264	INTRON CG12404	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	11389859	2L_11389859_SNP [dm3] 2L_11389859_SNP [dm6]	C	T	1.210e^-4	0.264	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11512966	2L_11512966_SNP [dm3] 2L_11512966_SNP [dm6]	T	A	1.210e^-4	0.264	SYNONYMOUS_CODING CG6509	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14340720	2R_14340720_SNP [dm3] 2R_18453215_SNP [dm6]	G	A	1.219e^-4	0.266	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	10388787	3R_10388787_SNP [dm3] 3R_14563065_SNP [dm6]	T	A	1.223e^-4	0.267	DOWNSTREAM CG14851 INTERGENIC
2L	3479863	2L_3479863_SNP [dm3] 2L_3479863_SNP [dm6]	G	A	1.224e^-4	0.267	DOWNSTREAM Thor & 1 other INTERGENIC
3L	8869190	3L_8869190_INS [dm3] 3L_8876090_INS [dm6]	A	AA	1.226e^-4	0.267	INTRON dally
2L	12592074	2L_12592074_SNP [dm3] 2L_12592074_SNP [dm6]	C	G	1.228e^-4	0.267	INTRON nub
2L	1293257	2L_1293257_SNP [dm3] 2L_1293257_SNP [dm6]	A	G	1.232e^-4	0.267	SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5957950	2L_5957950_INS [dm3] 2L_5957950_INS [dm6]	T	TT	1.232e^-4	0.267	DOWNSTREAM Vm26Ac & 1 other INTERGENIC
2L	3479871	2L_3479871_SNP [dm3] 2L_3479871_SNP [dm6]	A	G	1.234e^-4	0.267	DOWNSTREAM Thor & 1 other INTERGENIC
2L	22537778	2L_22537778_SNP [dm3] 2L_22645046_SNP [dm6]	T	C	1.237e^-4	0.267	INTRON CG40006
2L	14944156	2L_14944156_SNP [dm3] 2L_14944156_SNP [dm6]	T	A	1.237e^-4	0.267	INTRON CG42313
2L	16600466	2L_16600466_SNP [dm3] 2L_16600466_SNP [dm6]	T	A	1.238e^-4	0.267	INTRON CG42389	TF binding site mE1_TFBS_Trl
3R	17619404	3R_17619404_SNP [dm3] 3R_21793682_SNP [dm6]	A	C	1.239e^-4	0.267	INTRON CASK	TF binding site mE1_TFBS_cad
3L	5686819	3L_5686819_SNP [dm3] 3L_5693719_SNP [dm6]	C	T	1.246e^-4	0.268	INTRON sif
X	9770807	X_9770807_SNP [dm3] X_9876774_SNP [dm6]	A	C	1.248e^-4	0.268	UPSTREAM CG15247 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2381429	2L_2381429_SNP [dm3] 2L_2381429_SNP [dm6]	G	A	1.253e^-4	0.268	SYNONYMOUS_CODING Eogt DOWNSTREAM Atxn7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1668627	2L_1668627_SNP [dm3] 2L_1668627_SNP [dm6]	C	T	1.254e^-4	0.268	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11710080	2L_11710080_SNP [dm3] 2L_11710080_SNP [dm6]	T	A	1.256e^-4	0.268	INTERGENIC
X	2691260	X_2691260_SNP [dm3] X_2797227_SNP [dm6]	T	C	1.257e^-4	0.268	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	14270369	2R_14270369_SNP [dm3] 2R_18382864_SNP [dm6]	G	A	1.260e^-4	0.268	SYNONYMOUS_CODING IM23
2L	11396734	2L_11396734_INS [dm3] 2L_11396734_INS [dm6]	A	AG	1.261e^-4	0.268	INTERGENIC	regulatory region REDfly_CRMs
3R	17346308	3R_17346308_SNP [dm3] 3R_21520586_SNP [dm6]	T	A	1.262e^-4	0.268	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	17346315	3R_17346315_SNP [dm3] 3R_21520593_SNP [dm6]	A	G	1.262e^-4	0.268	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	4407342	2L_4407342_SNP [dm3] 2L_4407342_SNP [dm6]	T	C	1.263e^-4	0.268	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	151933	2L_151933_SNP [dm3] 2L_151933_SNP [dm6]	C	A	1.263e^-4	0.268	NON_SYNONYMOUS_CODING CG42399 INTRON CG11455
2L	4355454	2L_4355454_SNP [dm3] 2L_4355454_SNP [dm6]	G	C	1.264e^-4	0.268	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10497332	2L_10497332_SNP [dm3] 2L_10497332_SNP [dm6]	C	T	1.268e^-4	0.268	INTRON Myo31DF
3L	17740611	3L_17740611_SNP [dm3] 3L_17747511_SNP [dm6]	A	C	1.268e^-4	0.268	UPSTREAM CG6034 INTRON Ccn
X	18937762	X_18937762_SNP [dm3] X_19043729_SNP [dm6]	G	T	1.268e^-4	0.268	INTERGENIC
3R	9690506	3R_9690506_SNP [dm3] 3R_13864784_SNP [dm6]	G	A	1.272e^-4	0.269	INTERGENIC
2L	10542175	2L_10542175_SNP [dm3] 2L_10542175_SNP [dm6]	G	T	1.272e^-4	0.269	DOWNSTREAM CR44618 INTERGENIC
2L	1330441	2L_1330441_SNP [dm3] 2L_1330441_SNP [dm6]	T	G	1.275e^-4	0.269	DOWNSTREAM a5 INTERGENIC
2L	3394147	2L_3394147_SNP [dm3] 2L_3394147_SNP [dm6]	C	T	1.276e^-4	0.269	INTERGENIC
3R	4793853	3R_4793853_SNP [dm3] 3R_8968131_SNP [dm6]	C	T	1.283e^-4	0.27	INTERGENIC
2L	12480383	2L_12480383_SNP [dm3] 2L_12480383_SNP [dm6]	C	T	1.285e^-4	0.27	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	1769719	3L_1769719_SNP [dm3] 3L_1769719_SNP [dm6]	A	G	1.286e^-4	0.27	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22525439	3R_22525439_SNP [dm3] 3R_26699717_SNP [dm6]	T	G	1.286e^-4	0.27	SPLICE_SITE_REGION amon SYNONYMOUS_CODING amon
2R	1687904	2R_1687904_SNP [dm3] 2R_5800399_SNP [dm6]	G	A	1.288e^-4	0.27	INTERGENIC
2L	9947718	2L_9947718_SNP [dm3] 2L_9947718_SNP [dm6]	C	G	1.289e^-4	0.27	UPSTREAM CG5853 INTERGENIC
3L	17740586	3L_17740586_SNP [dm3] 3L_17747486_SNP [dm6]	A	T	1.290e^-4	0.27	UPSTREAM CG6034 INTRON Ccn
X	14804138	X_14804138_SNP [dm3] X_14910105_SNP [dm6]	T	A	1.292e^-4	0.27	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
2L	1380013	2L_1380013_SNP [dm3] 2L_1380013_SNP [dm6]	C	G	1.294e^-4	0.27	DOWNSTREAM CR44898 & 1 other INTERGENIC
3R	16424695	3R_16424695_SNP [dm3] 3R_20598973_SNP [dm6]	A	G	1.297e^-4	0.27	INTRON bon	TF binding site BDTNP1_TFBS_dl
2L	19698654	2L_19698654_SNP [dm3] 2L_19698654_SNP [dm6]	T	A	1.298e^-4	0.27	DOWNSTREAM scw INTRON Lar
2L	10542790	2L_10542790_DEL [dm3] 2L_10542790_DEL [dm6]	ATAA	A	1.299e^-4	0.27	DOWNSTREAM CR44618 INTERGENIC
2L	3327166	2L_3327166_DEL [dm3] 2L_3327166_DEL [dm6]	ATGA	A	1.300e^-4	0.27	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3R	10388804	3R_10388804_SNP [dm3] 3R_14563082_SNP [dm6]	C	A	1.301e^-4	0.27	DOWNSTREAM CG14851 INTERGENIC
2L	3781714	2L_3781714_SNP [dm3] 2L_3781714_SNP [dm6]	G	C	1.303e^-4	0.27	INTRON bowl	TF binding site mE1_TFBS_cad
3L	12047404	3L_12047404_SNP [dm3] 3L_12054304_SNP [dm6]	A	G	1.306e^-4	0.27	INTRON rols	silencer mE1_HDAC_PRE
2L	2671903	2L_2671903_SNP [dm3] 2L_2671903_SNP [dm6]	C	G	1.307e^-4	0.27	SYNONYMOUS_CODING Gr23a
2L	12567508	2L_12567508_SNP [dm3] 2L_12567508_SNP [dm6]	C	A	1.308e^-4	0.27	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18107590	2L_18107590_SNP [dm3] 2L_18107590_SNP [dm6]	G	A	1.318e^-4	0.272	INTERGENIC
2L	9896182	2L_9896182_SNP [dm3] 2L_9896182_SNP [dm6]	T	C	1.319e^-4	0.272	DOWNSTREAM RpS2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	425162	2L_425162_SNP [dm3] 2L_425162_SNP [dm6]	T	A	1.325e^-4	0.273	SYNONYMOUS_CODING BBS8
3L	16876932	3L_16876932_SNP [dm3] 3L_16883832_SNP [dm6]	C	T	1.326e^-4	0.273	INTRON Lmpt
2L	11396741	2L_11396741_INS [dm3] 2L_11396741_INS [dm6]	C	GATATAGCAT	1.329e^-4	0.273	INTERGENIC	regulatory region REDfly_CRMs
3R	17346337	3R_17346337_SNP [dm3] 3R_21520615_SNP [dm6]	C	G	1.336e^-4	0.274	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
2L	4168964	2L_4168964_SNP [dm3] 2L_4168964_SNP [dm6]	G	A	1.337e^-4	0.274	INTERGENIC
3R	25482451	3R_25482451_SNP [dm3] 3R_29656729_SNP [dm6]	T	A	1.337e^-4	0.274	INTRON Dop1R2
2L	1358856	2L_1358856_SNP [dm3] 2L_1358856_SNP [dm6]	T	C	1.340e^-4	0.274	DOWNSTREAM CG31659 & 1 other INTERGENIC
2L	19922222	2L_19922222_SNP [dm3] 2L_19922222_SNP [dm6]	T	C	1.344e^-4	0.274	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3L	17740283	3L_17740283_INS [dm3] 3L_17747183_INS [dm6]	A	ACTTACATACTAAGAAGGAC...	1.344e^-4	0.274	UPSTREAM CG6034 INTRON Ccn
3L	14982551	3L_14982551_SNP [dm3] 3L_14989451_SNP [dm6]	T	A	1.346e^-4	0.274	INTRON mnd	TF binding site BDTNP1_TFBS_da
2L	3271703	2L_3271703_SNP [dm3] 2L_3271703_SNP [dm6]	C	T	1.348e^-4	0.274	UTR_3_PRIME CG3347
2L	8059083	2L_8059083_SNP [dm3] 2L_8059083_SNP [dm6]	T	C	1.348e^-4	0.274	SYNONYMOUS_CODING poe
2L	19645996	2L_19645996_SNP [dm3] 2L_19645996_SNP [dm6]	C	G	1.352e^-4	0.275	INTRON Lar
2R	18519622	2R_18519622_SNP [dm3] 2R_22632117_SNP [dm6]	G	A	1.355e^-4	0.275	SYNONYMOUS_CODING CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1352980	2L_1352980_SNP [dm3] 2L_1352980_SNP [dm6]	C	A	1.360e^-4	0.275	UTR_3_PRIME CG5561 UPSTREAM CG5556
3R	16516453	3R_16516453_SNP [dm3] 3R_20690731_SNP [dm6]	G	A	1.361e^-4	0.275	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8172744	3L_8172744_SNP [dm3] 3L_8179644_SNP [dm6]	G	A	1.363e^-4	0.275	SYNONYMOUS_CODING mthl7
2L	9905538	2L_9905538_SNP [dm3] 2L_9905538_SNP [dm6]	C	A	1.364e^-4	0.275	INTRON CG13124
3L	18288729	3L_18288729_SNP [dm3] 3L_18295629_SNP [dm6]	C	G	1.365e^-4	0.275	EXON CR43306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	10389128	3R_10389128_SNP [dm3] 3R_14563406_SNP [dm6]	G	A	1.365e^-4	0.275	DOWNSTREAM CG14851 & 1 other INTERGENIC
2L	12353061	2L_12353061_SNP [dm3] 2L_12353061_SNP [dm6]	T	C	1.368e^-4	0.275	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	1693580	2L_1693580_INS [dm3] 2L_1693580_INS [dm6]	A	AGGGAAGAAAA...	1.370e^-4	0.275	INTRON chinmo
3L	17281984	3L_17281984_SNP [dm3] 3L_17288884_SNP [dm6]	T	G	1.371e^-4	0.275	INTERGENIC
3R	10389094	3R_10389094_SNP [dm3] 3R_14563372_SNP [dm6]	T	C	1.372e^-4	0.275	DOWNSTREAM CG14851 & 1 other INTERGENIC
2L	6054577	2L_6054577_SNP [dm3] 2L_6054577_SNP [dm6]	A	T	1.373e^-4	0.275	UTR_5_PRIME CG13995 DOWNSTREAM CG9135
2R	12870842	2R_12870842_SNP [dm3] 2R_16983337_SNP [dm6]	C	T	1.375e^-4	0.275	INTRON Cbp53E
X	14804157	X_14804157_SNP [dm3] X_14910124_SNP [dm6]	T	G	1.378e^-4	0.276	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
2L	12416052	2L_12416052_SNP [dm3] 2L_12416052_SNP [dm6]	T	A	1.384e^-4	0.276	INTRON vir-1
3R	25652117	3R_25652117_SNP [dm3] 3R_29826395_SNP [dm6]	T	G	1.385e^-4	0.276	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652126	3R_25652126_DEL [dm3] 3R_29826404_DEL [dm6]	AC	G	1.385e^-4	0.276	DOWNSTREAM neo & 1 other INTERGENIC
3R	21510307	3R_21510307_SNP [dm3] 3R_25684585_SNP [dm6]	G	C	1.386e^-4	0.276	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	10539624	2L_10539624_SNP [dm3] 2L_10539624_SNP [dm6]	G	C	1.386e^-4	0.276	INTERGENIC
2L	16606479	2L_16606479_SNP [dm3] 2L_16606479_SNP [dm6]	C	T	1.391e^-4	0.276	SYNONYMOUS_CODING CG31815 UPSTREAM CG4631 INTRON CG42389
X	18889402	X_18889402_SNP [dm3] X_18995369_SNP [dm6]	A	G	1.391e^-4	0.276	INTRON CG43759
2L	18051712	2L_18051712_SNP [dm3] 2L_18051712_SNP [dm6]	C	T	1.393e^-4	0.276	INTRON rdo
3R	411653	3R_411653_SNP [dm3] 3R_4585931_SNP [dm6]	A	T	1.398e^-4	0.277	INTRON CR45558
2L	18210996	2L_18210996_SNP [dm3] 2L_18210996_SNP [dm6]	G	A	1.402e^-4	0.277	UTR_5_PRIME CG42750
3L	15268837	3L_15268837_SNP [dm3] 3L_15275737_SNP [dm6]	G	T	1.403e^-4	0.277	INTERGENIC
2L	3234634	2L_3234634_SNP [dm3] 2L_3234634_SNP [dm6]	G	A	1.405e^-4	0.277	INTERGENIC
2L	9905655	2L_9905655_SNP [dm3] 2L_9905655_SNP [dm6]	G	A	1.409e^-4	0.277	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9905663	2L_9905663_SNP [dm3] 2L_9905663_SNP [dm6]	T	C	1.409e^-4	0.277	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	375863	3R_375863_DEL [dm3] 3R_4550141_DEL [dm6]	CC	C	1.410e^-4	0.277	INTRON CG34357	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13769925	2R_13769925_SNP [dm3] 2R_17882420_SNP [dm6]	T	C	1.410e^-4	0.277	UPSTREAM CG30110 INTRON Elk
X	19739562	X_19739562_DEL [dm3] X_19845529_DEL [dm6]	TTTTCTTT	T	1.410e^-4	0.277	INTRON pico	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25482326	3R_25482326_SNP [dm3] 3R_29656604_SNP [dm6]	T	A	1.411e^-4	0.277	INTRON Dop1R2
X	8630528	X_8630528_SNP [dm3] X_8736495_SNP [dm6]	C	T	1.415e^-4	0.278	INTERGENIC
2R	19136689	2R_19136689_SNP [dm3] 2R_23249166_SNP [dm6]	G	A	1.422e^-4	0.278	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10388807	3R_10388807_SNP [dm3] 3R_14563085_SNP [dm6]	T	C	1.422e^-4	0.278	DOWNSTREAM CG14851 INTERGENIC
2L	6046989	2L_6046989_SNP [dm3] 2L_6046989_SNP [dm6]	G	A	1.425e^-4	0.278	UTR_3_PRIME slmo & 1 other UPSTREAM ade2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	17046813	3L_17046813_SNP [dm3] 3L_17053713_SNP [dm6]	C	G	1.425e^-4	0.278	INTRON rogdi	TF binding site BDTNP1_TFBS_da
2L	639253	2L_639253_DEL [dm3] 2L_639253_DEL [dm6]	AGGG	A	1.427e^-4	0.278	DOWNSTREAM ds INTERGENIC
2L	639260	2L_639260_DEL [dm3] 2L_639260_DEL [dm6]	GCTATTCGAGGATCG...	G	1.427e^-4	0.278	DOWNSTREAM ds INTERGENIC
2R	4541964	2R_4541964_SNP [dm3] 2R_8654459_SNP [dm6]	G	C	1.429e^-4	0.278	INTRON ptc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	6765953	3R_6765953_SNP [dm3] 3R_10940231_SNP [dm6]	C	G	1.429e^-4	0.278	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1129033	2L_1129033_SNP [dm3] 2L_1129033_SNP [dm6]	A	C	1.431e^-4	0.278	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18420319	2L_18420319_SNP [dm3] 2L_18420319_SNP [dm6]	C	T	1.433e^-4	0.278	INTERGENIC
2L	16184695	2L_16184695_SNP [dm3] 2L_16184695_SNP [dm6]	T	C	1.434e^-4	0.278	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad
2R	10466770	2R_10466770_SNP [dm3] 2R_14579265_SNP [dm6]	C	T	1.437e^-4	0.278	INTRON ttv
2L	18095422	2L_18095422_SNP [dm3] 2L_18095422_SNP [dm6]	G	A	1.442e^-4	0.278	INTERGENIC
2L	1424450	2L_1424450_SNP [dm3] 2L_1424450_SNP [dm6]	A	C	1.443e^-4	0.278	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5960952	2L_5960952_DEL [dm3] 2L_5960952_DEL [dm6]	CA	C	1.443e^-4	0.278	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4347690	2L_4347690_SNP [dm3] 2L_4347690_SNP [dm6]	A	T	1.443e^-4	0.278	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21149351	3R_21149351_SNP [dm3] 3R_25323629_SNP [dm6]	G	A	1.443e^-4	0.278	SYNONYMOUS_CODING CHKov1 UPSTREAM CG10562
2L	12348024	2L_12348024_SNP [dm3] 2L_12348024_SNP [dm6]	T	C	1.445e^-4	0.278	UTR_5_PRIME bru-2 UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4382430	2L_4382430_SNP [dm3] 2L_4382430_SNP [dm6]	T	C	1.447e^-4	0.278	SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4670272	3L_4670272_SNP [dm3] 3L_4670272_SNP [dm6]	G	A	1.448e^-4	0.278	SYNONYMOUS_CODING axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16606401	2L_16606401_SNP [dm3] 2L_16606401_SNP [dm6]	A	G	1.450e^-4	0.278	SYNONYMOUS_CODING CG31815 UPSTREAM CG4631 INTRON CG42389
2L	4700177	2L_4700177_SNP [dm3] 2L_4700177_SNP [dm6]	A	T	1.451e^-4	0.278	DOWNSTREAM Taf12L INTRON CG34351
2L	757051	2L_757051_SNP [dm3] 2L_757051_SNP [dm6]	G	A	1.452e^-4	0.278	INTRON GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	3765093	2L_3765093_SNP [dm3] 2L_3765093_SNP [dm6]	G	T	1.453e^-4	0.278	UPSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_cad
2R	11409896	2R_11409896_SNP [dm3] 2R_15522391_SNP [dm6]	T	G	1.456e^-4	0.278	INTRON Khc-73
2R	10563587	2R_10563587_SNP [dm3] 2R_14676082_SNP [dm6]	T	C	1.459e^-4	0.278	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20636283	3R_20636283_SNP [dm3] 3R_24810561_SNP [dm6]	C	A	1.460e^-4	0.278	INTRON CG5807	TF binding site mE1_TFBS_kn
2L	6041721	2L_6041721_SNP [dm3] 2L_6041721_SNP [dm6]	C	A	1.461e^-4	0.278	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10575332	2L_10575332_SNP [dm3] 2L_10575332_SNP [dm6]	G	A	1.468e^-4	0.28	DOWNSTREAM w-cup INTRON Trim9
3L	1483171	3L_1483171_DEL [dm3] 3L_1483171_DEL [dm6]	GGTCCTGGATCCTGG...	G	1.470e^-4	0.28	INTRON stet	TF binding site mE1_TFBS_cad
3L	22341685	3L_22341685_SNP [dm3] 3L_22348585_SNP [dm6]	A	C	1.479e^-4	0.281	INTRON Ten-m
3R	17418376	3R_17418376_SNP [dm3] 3R_21592654_SNP [dm6]	A	T	1.484e^-4	0.281	UPSTREAM InR INTRON InR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12054843	3L_12054843_SNP [dm3] 3L_12061743_SNP [dm6]	A	G	1.485e^-4	0.281	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1391452	2L_1391452_SNP [dm3] 2L_1391452_SNP [dm6]	T	C	1.487e^-4	0.281	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
2R	1189114	2R_1189114_SNP [dm3] 2R_5301609_SNP [dm6]	G	A	1.494e^-4	0.281	INTERGENIC
3R	9710673	3R_9710673_SNP [dm3] 3R_13884951_SNP [dm6]	T	C	1.495e^-4	0.281	INTERGENIC
2L	19689608	2L_19689608_SNP [dm3] 2L_19689608_SNP [dm6]	C	G	1.496e^-4	0.281	INTRON Lar
2L	19689612	2L_19689612_SNP [dm3] 2L_19689612_SNP [dm6]	C	A	1.496e^-4	0.281	INTRON Lar
2R	10466733	2R_10466733_SNP [dm3] 2R_14579228_SNP [dm6]	G	A	1.496e^-4	0.281	INTRON ttv
2L	6107157	2L_6107157_SNP [dm3] 2L_6107157_SNP [dm6]	A	C	1.498e^-4	0.281	INTRON stai
2R	11390710	2R_11390710_SNP [dm3] 2R_15503205_SNP [dm6]	A	C	1.500e^-4	0.281	NON_SYNONYMOUS_CODING Ir52b UPSTREAM Ir52c
2L	19918245	2L_19918245_SNP [dm3] 2L_19918245_SNP [dm6]	A	T	1.504e^-4	0.281	START_GAINED sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6051067	2L_6051067_SNP [dm3] 2L_6051067_SNP [dm6]	G	T	1.504e^-4	0.281	SPLICE_SITE_REGION CG9135 UTR_5_PRIME CG9135 DOWNSTREAM CG12393 INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7569039	2L_7569039_SNP [dm3] 2L_7569039_SNP [dm6]	G	A	1.504e^-4	0.281	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.719e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.005371

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	9.8139	0.0074

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3294 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2934751	X_2934751_INS [dm3] X_3040718_INS [dm6]	G	GCATCCCAG	3.738e^-9	0.007	INTRON kirre
X	10308332	X_10308332_SNP [dm3] X_10414299_SNP [dm6]	A	T	8.310e^-8	0.052	INTRON CG32683
3R	9698663	3R_9698663_DEL [dm3] 3R_13872941_DEL [dm6]	AC	A	1.009e^-7	0.052	INTRON E5
3R	22472490	3R_22472490_SNP [dm3] 3R_26646768_SNP [dm6]	A	T	1.102e^-7	0.052	UTR_3_PRIME beat-VII
3L	2641246	3L_2641246_SNP [dm3] 3L_2641246_SNP [dm6]	C	T	1.793e^-7	0.062	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
3R	21681446	3R_21681446_SNP [dm3] 3R_25855724_SNP [dm6]	T	A	2.132e^-7	0.062	UPSTREAM CG5890 INTERGENIC
3R	15589538	3R_15589538_SNP [dm3] 3R_19763816_SNP [dm6]	A	C	2.312e^-7	0.062	INTRON GluClalpha
3R	15603210	3R_15603210_SNP [dm3] 3R_19777488_SNP [dm6]	C	T	3.498e^-7	0.074	UPSTREAM CG11659 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15380247	3R_15380247_SNP [dm3] 3R_19554525_SNP [dm6]	C	T	3.556e^-7	0.074	INTRON Dys	TF binding site mE1_TFBS_inv
2R	18954554	2R_18954554_SNP [dm3] 2R_23067031_SNP [dm6]	C	T	4.832e^-7	0.091	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9695458	3R_9695458_SNP [dm3] 3R_13869736_SNP [dm6]	G	A	6.118e^-7	0.099	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9698043	3R_9698043_SNP [dm3] 3R_13872321_SNP [dm6]	A	C	6.313e^-7	0.099	INTRON E5
3R	9699245	3R_9699245_SNP [dm3] 3R_13873523_SNP [dm6]	C	T	7.244e^-7	0.104	SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2075610	2L_2075610_SNP [dm3] 2L_2075610_SNP [dm6]	G	A	8.645e^-7	0.109	INTRON dpr3
X	2934465	X_2934465_SNP [dm3] X_3040432_SNP [dm6]	G	T	8.920e^-7	0.109	INTRON kirre
3R	9700105	3R_9700105_SNP [dm3] 3R_13874383_SNP [dm6]	A	T	9.282e^-7	0.109	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1198965	2L_1198965_SNP [dm3] 2L_1198965_SNP [dm6]	A	G	1.015e^-6	0.112	SYNONYMOUS_CODING CG5139 UPSTREAM CG43348
3R	21679286	3R_21679286_SNP [dm3] 3R_25853564_SNP [dm6]	G	A	1.216e^-6	0.122	SYNONYMOUS_CODING CG5886
3R	26401484	3R_26401484_SNP [dm3] 3R_30575762_SNP [dm6]	G	A	1.298e^-6	0.122	UTR_3_PRIME tmod INTRON tmod
3R	15589867	3R_15589867_SNP [dm3] 3R_19764145_SNP [dm6]	A	G	1.421e^-6	0.122	INTRON GluClalpha
3L	12583796	3L_12583796_SNP [dm3] 3L_12590696_SNP [dm6]	G	A	1.692e^-6	0.122	INTRON ara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11297092	3L_11297092_SNP [dm3] 3L_11303992_SNP [dm6]	C	T	1.938e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18953748	2R_18953748_SNP [dm3] 2R_23066225_SNP [dm6]	G	A	1.971e^-6	0.122	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9702909	3R_9702909_SNP [dm3] 3R_13877187_SNP [dm6]	C	A	2.070e^-6	0.122	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11297085	3L_11297085_SNP [dm3] 3L_11303985_SNP [dm6]	A	T	2.186e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2644443	2L_2644443_SNP [dm3] 2L_2644443_SNP [dm6]	G	T	2.206e^-6	0.122	INTERGENIC
3L	11297041	3L_11297041_SNP [dm3] 3L_11303941_SNP [dm6]	T	C	2.215e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21675426	3R_21675426_DEL [dm3] 3R_25849704_DEL [dm6]	GTATG	G	2.257e^-6	0.122	DOWNSTREAM CG14545 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	2.329e^-6	0.122	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2263524	X_2263524_SNP [dm3] X_2369491_SNP [dm6]	C	A	2.426e^-6	0.122	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9701517	3R_9701517_SNP [dm3] 3R_13875795_SNP [dm6]	G	C	2.468e^-6	0.122	UPSTREAM E5 INTRON E5	TF binding site BDTNP1_TFBS_dl
3R	9700214	3R_9700214_SNP [dm3] 3R_13874492_SNP [dm6]	A	G	2.473e^-6	0.122	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9701369	3R_9701369_SNP [dm3] 3R_13875647_SNP [dm6]	G	A	2.522e^-6	0.122	UPSTREAM E5 INTRON E5	TF binding site BDTNP1_TFBS_dl
3R	13181712	3R_13181712_SNP [dm3] 3R_17355990_SNP [dm6]	T	C	2.548e^-6	0.122	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3R	15380238	3R_15380238_SNP [dm3] 3R_19554516_SNP [dm6]	C	T	2.591e^-6	0.122	INTRON Dys	TF binding site mE1_TFBS_inv
3L	2641110	3L_2641110_SNP [dm3] 3L_2641110_SNP [dm6]	A	C	2.614e^-6	0.122	UTR_3_PRIME CG42245 & 1 other
3L	11297072	3L_11297072_SNP [dm3] 3L_11303972_SNP [dm6]	A	C	2.639e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11297073	3L_11297073_SNP [dm3] 3L_11303973_SNP [dm6]	A	T	2.639e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2651797	3L_2651797_SNP [dm3] 3L_2651797_SNP [dm6]	A	G	2.641e^-6	0.122	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
X	2932621	X_2932621_SNP [dm3] X_3038588_SNP [dm6]	C	T	2.739e^-6	0.122	INTRON kirre
3L	11297082	3L_11297082_SNP [dm3] 3L_11303982_SNP [dm6]	T	C	2.866e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1551858	2L_1551858_SNP [dm3] 2L_1551858_SNP [dm6]	A	G	2.895e^-6	0.122	INTERGENIC
3L	11297037	3L_11297037_SNP [dm3] 3L_11303937_SNP [dm6]	C	T	2.899e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1666968	2R_1666968_SNP [dm3] 2R_5779463_SNP [dm6]	C	T	2.902e^-6	0.122	INTRON ZnT41F
X	2934468	X_2934468_SNP [dm3] X_3040435_SNP [dm6]	A	C	2.929e^-6	0.122	INTRON kirre
2L	2644583	2L_2644583_SNP [dm3] 2L_2644583_SNP [dm6]	A	C	3.125e^-6	0.127	INTERGENIC
3R	26349670	3R_26349670_SNP [dm3] 3R_30523948_SNP [dm6]	C	T	3.489e^-6	0.136	INTRON jdp	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15155891	2R_15155891_SNP [dm3] 2R_19268386_SNP [dm6]	T	G	3.532e^-6	0.136	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1403981	3R_1403981_SNP [dm3] 3R_5578259_SNP [dm6]	C	A	3.578e^-6	0.136	NON_SYNONYMOUS_CODING CRMP UTR_3_PRIME CRMP
2L	1551893	2L_1551893_SNP [dm3] 2L_1551893_SNP [dm6]	A	G	3.659e^-6	0.136	INTERGENIC
2R	18954524	2R_18954524_SNP [dm3] 2R_23067001_SNP [dm6]	C	G	3.818e^-6	0.136	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21127245	X_21127245_DEL [dm3] X_21256218_DEL [dm6]	TCATTCAG	T	3.830e^-6	0.136	INTRON CG32521
3R	9700179	3R_9700179_SNP [dm3] 3R_13874457_SNP [dm6]	A	T	3.965e^-6	0.136	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17418376	3R_17418376_SNP [dm3] 3R_21592654_SNP [dm6]	A	T	3.977e^-6	0.136	UPSTREAM InR INTRON InR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13611125	3R_13611125_SNP [dm3] 3R_17785403_SNP [dm6]	A	G	3.993e^-6	0.136	INTRON CG43102
3R	9701404	3R_9701404_SNP [dm3] 3R_13875682_SNP [dm6]	A	T	4.293e^-6	0.144	UPSTREAM E5 INTRON E5	TF binding site BDTNP1_TFBS_dl
3R	26350562	3R_26350562_SNP [dm3] 3R_30524840_SNP [dm6]	C	A	4.522e^-6	0.147	INTRON jdp
3R	16718633	3R_16718633_SNP [dm3] 3R_20892911_SNP [dm6]	G	A	4.629e^-6	0.147	EXON CR44947
2R	10096088	2R_10096088_SNP [dm3] 2R_14208583_SNP [dm6]	C	A	4.670e^-6	0.147	INTRON Sox15	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18953673	2R_18953673_SNP [dm3] 2R_23066150_SNP [dm6]	T	C	4.722e^-6	0.147	SYNONYMOUS_CODING PPO3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17675826	3R_17675826_DEL [dm3] 3R_21850104_DEL [dm6]	CAGTGAAGTC	A	4.772e^-6	0.147	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22458899	3R_22458899_SNP [dm3] 3R_26633177_SNP [dm6]	G	A	5.006e^-6	0.148	UPSTREAM TwdlH DOWNSTREAM TwdlN INTERGENIC
2L	5712007	2L_5712007_SNP [dm3] 2L_5712007_SNP [dm6]	T	C	5.072e^-6	0.148	UTR_5_PRIME CG7236 INTRON CG7236
3R	22467084	3R_22467084_SNP [dm3] 3R_26641362_SNP [dm6]	G	C	5.172e^-6	0.148	DOWNSTREAM TwdlD INTERGENIC
2L	14282364	2L_14282364_SNP [dm3] 2L_14282364_SNP [dm6]	A	G	5.174e^-6	0.148	INTRON wb
3R	26392844	3R_26392844_SNP [dm3] 3R_30567122_SNP [dm6]	G	T	5.222e^-6	0.148	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22449610	3R_22449610_SNP [dm3] 3R_26623888_SNP [dm6]	A	C	5.532e^-6	0.155	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
X	2270689	X_2270689_SNP [dm3] X_2376656_SNP [dm6]	A	G	5.759e^-6	0.159	UTR_3_PRIME PsGEF INTRON PsGEF
X	18983775	X_18983775_SNP [dm3] X_19089742_SNP [dm6]	G	T	5.929e^-6	0.161	INTERGENIC
3R	16371966	3R_16371966_SNP [dm3] 3R_20546244_SNP [dm6]	G	T	6.382e^-6	0.169	INTRON Stat92E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9770502	3R_9770502_SNP [dm3] 3R_13944780_SNP [dm6]	G	A	6.511e^-6	0.169	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad
3R	26372007	3R_26372007_SNP [dm3] 3R_30546285_SNP [dm6]	G	A	6.676e^-6	0.169	UPSTREAM tmod INTRON tmod
2R	4355703	2R_4355703_SNP [dm3] 2R_8468198_SNP [dm6]	A	G	6.740e^-6	0.169	DOWNSTREAM Mal-A6 & 1 other INTERGENIC
3R	22473197	3R_22473197_SNP [dm3] 3R_26647475_SNP [dm6]	T	G	6.744e^-6	0.169	UTR_3_PRIME beat-VII
X	2270721	X_2270721_SNP [dm3] X_2376688_SNP [dm6]	A	T	6.919e^-6	0.169	UTR_3_PRIME PsGEF INTRON PsGEF
3L	4601667	3L_4601667_SNP [dm3] 3L_4601667_SNP [dm6]	C	T	6.929e^-6	0.169	INTRON Src64B
3R	17865198	3R_17865198_SNP [dm3] 3R_22039476_SNP [dm6]	C	T	6.960e^-6	0.169	DOWNSTREAM pit INTERGENIC
3R	23040776	3R_23040776_SNP [dm3] 3R_27215054_SNP [dm6]	G	A	7.042e^-6	0.169	INTERGENIC
3R	9700102	3R_9700102_INS [dm3] 3R_13874380_INS [dm6]	A	AA	7.313e^-6	0.174	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27248657	3R_27248657_SNP [dm3] 3R_31422935_SNP [dm6]	A	C	7.556e^-6	0.177	INTRON Gprk2
3R	16371944	3R_16371944_SNP [dm3] 3R_20546222_SNP [dm6]	G	A	7.776e^-6	0.18	INTRON Stat92E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7409201	2L_7409201_SNP [dm3] 2L_7409201_SNP [dm6]	C	T	7.913e^-6	0.18	SYNONYMOUS_CODING CG5181 DOWNSTREAM CG5177
2R	1687881	2R_1687881_SNP [dm3] 2R_5800376_SNP [dm6]	A	G	7.981e^-6	0.18	INTERGENIC
3R	21510432	3R_21510432_SNP [dm3] 3R_25684710_SNP [dm6]	G	C	8.212e^-6	0.183	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	19071400	3L_19071400_SNP [dm3] 3L_19078300_SNP [dm6]	C	A	8.325e^-6	0.184	INTRON Mkp3	TF binding site BDTNP1_TFBS_sna
3R	22467331	3R_22467331_SNP [dm3] 3R_26641609_SNP [dm6]	G	T	8.633e^-6	0.187	DOWNSTREAM TwdlD INTERGENIC
3R	9698682	3R_9698682_SNP [dm3] 3R_13872960_SNP [dm6]	G	T	8.686e^-6	0.187	INTRON E5
2R	4115670	2R_4115670_SNP [dm3] 2R_8228165_SNP [dm6]	C	T	8.825e^-6	0.188	UTR_3_PRIME CG34217 DOWNSTREAM dpn
3R	22449919	3R_22449919_SNP [dm3] 3R_26624197_SNP [dm6]	A	T	8.958e^-6	0.189	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2L	2680255	2L_2680255_SNP [dm3] 2L_2680255_SNP [dm6]	C	G	9.123e^-6	0.19	INTRON CG31690
3R	15589830	3R_15589830_SNP [dm3] 3R_19764108_SNP [dm6]	A	C	9.380e^-6	0.191	INTRON GluClalpha
3L	11376283	3L_11376283_DEL [dm3] 3L_11383183_DEL [dm6]	GCTG	G	9.389e^-6	0.191	EXON CR42755	TF binding site mE1_TFBS_HSA
2R	4519557	2R_4519557_SNP [dm3] 2R_8632052_SNP [dm6]	T	A	9.517e^-6	0.191	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1658007	2L_1658007_INS [dm3] 2L_1658007_INS [dm6]	T	TGCCACACGAGA...	9.758e^-6	0.191	INTRON chinmo	TF binding site mE1_TFBS_Kr
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	9.760e^-6	0.191	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	2934541	X_2934541_SNP [dm3] X_3040508_SNP [dm6]	T	A	9.841e^-6	0.191	INTRON kirre
2L	2082121	2L_2082121_SNP [dm3] 2L_2082121_SNP [dm6]	A	T	9.904e^-6	0.191	DOWNSTREAM CG12674 INTRON dpr3 EXON CR44808	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2070639	2L_2070639_SNP [dm3] 2L_2070639_SNP [dm6]	A	T	1.072e^-5	0.203	INTRON dpr3
2L	2075825	2L_2075825_SNP [dm3] 2L_2075825_SNP [dm6]	C	G	1.072e^-5	0.203	INTRON dpr3
2L	9951248	2L_9951248_SNP [dm3] 2L_9951248_SNP [dm6]	A	G	1.111e^-5	0.207	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2L	955629	2L_955629_INS [dm3] 2L_955629_INS [dm6]	G	GGATG	1.115e^-5	0.207	INTRON CG4341
3L	2652166	3L_2652166_SNP [dm3] 3L_2652166_SNP [dm6]	A	G	1.144e^-5	0.21	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
3R	22467311	3R_22467311_SNP [dm3] 3R_26641589_SNP [dm6]	T	C	1.170e^-5	0.213	DOWNSTREAM TwdlD INTERGENIC
3R	15221515	3R_15221515_SNP [dm3] 3R_19395793_SNP [dm6]	T	A	1.208e^-5	0.216	DOWNSTREAM CG3739 INTRON Ino80
2R	12334925	2R_12334925_SNP [dm3] 2R_16447420_SNP [dm6]	G	A	1.211e^-5	0.216	UTR_3_PRIME CG15925
2R	13848353	2R_13848353_SNP [dm3] 2R_17960848_SNP [dm6]	G	A	1.223e^-5	0.216	INTERGENIC
2R	3194376	2R_3194376_SNP [dm3] 2R_7306871_SNP [dm6]	G	T	1.279e^-5	0.224	INTERGENIC
X	2270853	X_2270853_SNP [dm3] X_2376820_SNP [dm6]	A	T	1.312e^-5	0.225	UTR_3_PRIME PsGEF INTRON PsGEF
2R	1691443	2R_1691443_SNP [dm3] 2R_5803938_SNP [dm6]	C	A	1.343e^-5	0.225	UPSTREAM dpr12 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	21369198	3R_21369198_SNP [dm3] 3R_25543476_SNP [dm6]	T	G	1.363e^-5	0.225	INTRON msi
2L	2081344	2L_2081344_SNP [dm3] 2L_2081344_SNP [dm6]	T	C	1.377e^-5	0.225	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
3R	14290732	3R_14290732_SNP [dm3] 3R_18465010_SNP [dm6]	C	T	1.392e^-5	0.225	INTRON fru
2L	2085944	2L_2085944_SNP [dm3] 2L_2085944_SNP [dm6]	G	A	1.394e^-5	0.225	INTRON dpr3
2R	14271651	2R_14271651_SNP [dm3] 2R_18384146_SNP [dm6]	C	A	1.437e^-5	0.225	UPSTREAM IM23 & 1 other DOWNSTREAM CG15067 INTRON IM1
3R	9698880	3R_9698880_INS [dm3] 3R_13873158_INS [dm6]	T	TT	1.447e^-5	0.225	INTRON E5	TF binding site mE1_TFBS_cad
3R	23310855	3R_23310855_SNP [dm3] 3R_27485133_SNP [dm6]	C	T	1.456e^-5	0.225	INTERGENIC
2R	17645185	2R_17645185_SNP [dm3] 2R_21757680_SNP [dm6]	C	T	1.466e^-5	0.225	SYNONYMOUS_CODING Grx-1
2L	8121336	2L_8121336_SNP [dm3] 2L_8121336_SNP [dm6]	G	A	1.473e^-5	0.225	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2080601	2L_2080601_SNP [dm3] 2L_2080601_SNP [dm6]	C	T	1.475e^-5	0.225	SYNONYMOUS_CODING CG12674 INTRON dpr3
3R	18688457	3R_18688457_SNP [dm3] 3R_22862735_SNP [dm6]	A	C	1.489e^-5	0.225	INTERGENIC
2L	1470186	2L_1470186_SNP [dm3] 2L_1470186_SNP [dm6]	A	G	1.492e^-5	0.225	INTERGENIC
3L	9915578	3L_9915578_SNP [dm3] 3L_9922478_SNP [dm6]	G	A	1.526e^-5	0.225	INTRON CG34356
3L	16790441	3L_16790441_SNP [dm3] 3L_16797341_SNP [dm6]	C	T	1.527e^-5	0.225	INTRON CG9674
3R	9700891	3R_9700891_SNP [dm3] 3R_13875169_SNP [dm6]	G	T	1.552e^-5	0.225	UTR_5_PRIME E5 UPSTREAM E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27198143	3R_27198143_SNP [dm3] 3R_31372421_SNP [dm6]	T	A	1.552e^-5	0.225	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
3R	22448410	3R_22448410_SNP [dm3] 3R_26622688_SNP [dm6]	A	G	1.555e^-5	0.225	SYNONYMOUS_CODING TwdlB
3R	15407398	3R_15407398_SNP [dm3] 3R_19581676_SNP [dm6]	G	A	1.568e^-5	0.225	INTRON Dys
2L	2085881	2L_2085881_SNP [dm3] 2L_2085881_SNP [dm6]	C	T	1.586e^-5	0.225	INTRON dpr3
2L	2085910	2L_2085910_SNP [dm3] 2L_2085910_SNP [dm6]	T	A	1.586e^-5	0.225	INTRON dpr3
2L	2085919	2L_2085919_SNP [dm3] 2L_2085919_SNP [dm6]	C	A	1.586e^-5	0.225	INTRON dpr3
2R	4356638	2R_4356638_SNP [dm3] 2R_8469133_SNP [dm6]	T	C	1.590e^-5	0.225	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
3R	17418369	3R_17418369_INS [dm3] 3R_21592647_INS [dm6]	A	AA	1.590e^-5	0.225	UPSTREAM InR INTRON InR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10626247	3R_10626247_SNP [dm3] 3R_14800525_SNP [dm6]	T	C	1.599e^-5	0.225	SYNONYMOUS_CODING CG14856
3L	9915583	3L_9915583_SNP [dm3] 3L_9922483_SNP [dm6]	G	A	1.610e^-5	0.225	INTRON CG34356
2R	1632218	2R_1632218_SNP [dm3] 2R_5744713_SNP [dm6]	T	C	1.620e^-5	0.225	INTERGENIC	regulatory region REDfly_CRMs
3L	9915655	3L_9915655_SNP [dm3] 3L_9922555_SNP [dm6]	A	T	1.637e^-5	0.226	INTRON CG34356
2R	19431427	2R_19431427_SNP [dm3] 2R_23543904_SNP [dm6]	C	A	1.664e^-5	0.228	UPSTREAM CG30185 DOWNSTREAM wmd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5616611	2L_5616611_SNP [dm3] 2L_5616611_SNP [dm6]	T	A	1.681e^-5	0.228	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23887952	3R_23887952_SNP [dm3] 3R_28062230_SNP [dm6]	T	C	1.695e^-5	0.229	INTRON CG34362
2R	6788078	2R_6788078_SNP [dm3] 2R_10900573_SNP [dm6]	A	G	1.722e^-5	0.231	INTERGENIC
X	2934108	X_2934108_SNP [dm3] X_3040075_SNP [dm6]	A	T	1.740e^-5	0.231	INTRON kirre
2R	1632217	2R_1632217_SNP [dm3] 2R_5744712_SNP [dm6]	A	T	1.761e^-5	0.232	INTERGENIC	regulatory region REDfly_CRMs
2R	4519813	2R_4519813_SNP [dm3] 2R_8632308_SNP [dm6]	T	C	1.781e^-5	0.233	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	2084330	2L_2084330_SNP [dm3] 2L_2084330_SNP [dm6]	A	T	1.792e^-5	0.233	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15917253	2R_15917253_SNP [dm3] 2R_20029748_SNP [dm6]	C	G	1.804e^-5	0.233	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12338008	2R_12338008_SNP [dm3] 2R_16450503_SNP [dm6]	C	T	1.878e^-5	0.241	INTERGENIC
3L	7300823	3L_7300823_SNP [dm3] 3L_7307723_SNP [dm6]	T	G	1.888e^-5	0.241	INTRON unc-13-4A
2L	1034382	2L_1034382_SNP [dm3] 2L_1034382_SNP [dm6]	G	T	1.959e^-5	0.248	INTRON IA-2
2L	11528253	2L_11528253_SNP [dm3] 2L_11528253_SNP [dm6]	A	C	1.975e^-5	0.249	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
2L	14194182	2L_14194182_SNP [dm3] 2L_14194182_SNP [dm6]	C	G	2.018e^-5	0.252	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25652117	3R_25652117_SNP [dm3] 3R_29826395_SNP [dm6]	T	G	2.081e^-5	0.256	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652126	3R_25652126_DEL [dm3] 3R_29826404_DEL [dm6]	AC	G	2.081e^-5	0.256	DOWNSTREAM neo & 1 other INTERGENIC
2L	13739227	2L_13739227_SNP [dm3] 2L_13739227_SNP [dm6]	G	A	2.093e^-5	0.256	INTERGENIC
2R	17650705	2R_17650705_SNP [dm3] 2R_21763200_SNP [dm6]	T	A	2.113e^-5	0.256	UPSTREAM CG43982 EXON CR43983
3L	14982700	3L_14982700_SNP [dm3] 3L_14989600_SNP [dm6]	A	T	2.125e^-5	0.256	INTRON mnd	TF binding site BDTNP1_TFBS_da
3R	9700266	3R_9700266_SNP [dm3] 3R_13874544_SNP [dm6]	T	C	2.128e^-5	0.256	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18106801	2R_18106801_SNP [dm3] 2R_22219296_SNP [dm6]	G	T	2.148e^-5	0.256	SYNONYMOUS_CODING Oatp58Da UPSTREAM CG30278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2042991	2L_2042991_SNP [dm3] 2L_2042991_SNP [dm6]	A	G	2.161e^-5	0.256	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad
X	17331553	X_17331553_SNP [dm3] X_17437520_SNP [dm6]	A	G	2.209e^-5	0.258	INTRON CG12994
2R	16489867	2R_16489867_SNP [dm3] 2R_20602362_SNP [dm6]	A	C	2.218e^-5	0.258	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21369497	3R_21369497_SNP [dm3] 3R_25543775_SNP [dm6]	C	T	2.218e^-5	0.258	INTRON msi	TF binding site mE1_TFBS_cad
3L	3772092	3L_3772092_SNP [dm3] 3L_3772092_SNP [dm6]	G	A	2.226e^-5	0.258	INTRON CG32264
3R	14857031	3R_14857031_SNP [dm3] 3R_19031309_SNP [dm6]	C	A	2.307e^-5	0.265	UPSTREAM CG6013 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16075482	3R_16075482_SNP [dm3] 3R_20249760_SNP [dm6]	T	C	2.339e^-5	0.267	INTERGENIC
2R	7114575	2R_7114575_SNP [dm3] 2R_11227070_SNP [dm6]	G	T	2.348e^-5	0.267	SYNONYMOUS_CODING metro DOWNSTREAM CG7737	TF binding site mE1_TFBS_cad
2R	10097301	2R_10097301_SNP [dm3] 2R_14209796_SNP [dm6]	G	A	2.437e^-5	0.267	INTRON Sox15	regulatory region REDfly_CRMs
2L	12498653	2L_12498653_SNP [dm3] 2L_12498653_SNP [dm6]	G	C	2.448e^-5	0.267	NON_SYNONYMOUS_CODING bun INTRON bun
3R	9894576	3R_9894576_SNP [dm3] 3R_14068854_SNP [dm6]	A	G	2.450e^-5	0.267	INTRON foxo
3R	26178690	3R_26178690_INS [dm3] 3R_30352968_INS [dm6]	C	CAC	2.455e^-5	0.267	INTRON hdc
2L	13739265	2L_13739265_SNP [dm3] 2L_13739265_SNP [dm6]	G	C	2.481e^-5	0.267	INTERGENIC
2L	11271369	2L_11271369_SNP [dm3] 2L_11271369_SNP [dm6]	G	A	2.506e^-5	0.267	SYNONYMOUS_CODING cana UPSTREAM cana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	26341394	3R_26341394_SNP [dm3] 3R_30515672_SNP [dm6]	G	T	2.533e^-5	0.267	NON_SYNONYMOUS_CODING CG9698
X	12202440	X_12202440_INS [dm3] X_12308407_INS [dm6]	A	AC	2.540e^-5	0.267	INTRON Ten-a
3R	21167694	3R_21167694_SNP [dm3] 3R_25341972_SNP [dm6]	G	A	2.587e^-5	0.267	NON_SYNONYMOUS_CODING rha
2L	6328268	2L_6328268_SNP [dm3] 2L_6328268_SNP [dm6]	A	G	2.588e^-5	0.267	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10147037	2L_10147037_SNP [dm3] 2L_10147037_SNP [dm6]	A	G	2.602e^-5	0.267	UTR_5_PRIME CG4839 INTRON CG44153	TF binding site mE1_TFBS_cad
3R	16724511	3R_16724511_SNP [dm3] 3R_20898789_SNP [dm6]	A	C	2.623e^-5	0.267	INTERGENIC
3R	21420026	3R_21420026_INS [dm3] 3R_25594304_INS [dm6]	G	GTAGGAGTAG	2.625e^-5	0.267	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20127127	2R_20127127_SNP [dm3] 2R_24239604_SNP [dm6]	C	T	2.625e^-5	0.267	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2047028	2L_2047028_SNP [dm3] 2L_2047028_SNP [dm6]	C	A	2.666e^-5	0.267	SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1910387	2L_1910387_INS [dm3] 2L_1910387_INS [dm6]	T	TGGT	2.674e^-5	0.267	INTRON CG7337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	215071	3L_215071_SNP [dm3] 3L_215071_SNP [dm6]	T	C	2.691e^-5	0.267	SYNONYMOUS_CODING CG16940
3L	8821178	3L_8821178_SNP [dm3] 3L_8828078_SNP [dm6]	C	T	2.702e^-5	0.267	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6789195	2R_6789195_SNP [dm3] 2R_10901690_SNP [dm6]	A	C	2.713e^-5	0.267	INTERGENIC
3L	2652065	3L_2652065_SNP [dm3] 3L_2652065_SNP [dm6]	G	T	2.741e^-5	0.267	UPSTREAM Snup & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	1687822	2R_1687822_SNP [dm3] 2R_5800317_SNP [dm6]	A	T	2.815e^-5	0.267	INTERGENIC
3R	21419760	3R_21419760_INS [dm3] 3R_25594038_INS [dm6]	A	AA	2.831e^-5	0.267	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1390224	2R_1390224_SNP [dm3] 2R_5502719_SNP [dm6]	C	T	2.883e^-5	0.267	DOWNSTREAM TpnC4 INTRON CG30438	transposable element FlyBase
2L	2029263	2L_2029263_SNP [dm3] 2L_2029263_SNP [dm6]	C	A	2.928e^-5	0.267	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2046754	2L_2046754_SNP [dm3] 2L_2046754_SNP [dm6]	A	T	2.928e^-5	0.267	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2046943	2L_2046943_SNP [dm3] 2L_2046943_SNP [dm6]	C	A	2.928e^-5	0.267	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2047029	2L_2047029_SNP [dm3] 2L_2047029_SNP [dm6]	C	T	2.928e^-5	0.267	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2049209	2L_2049209_SNP [dm3] 2L_2049209_SNP [dm6]	G	A	2.928e^-5	0.267	INTERGENIC
2L	2049593	2L_2049593_SNP [dm3] 2L_2049593_SNP [dm6]	C	T	2.928e^-5	0.267	INTERGENIC
2L	2049799	2L_2049799_DEL [dm3] 2L_2049799_DEL [dm6]	CC	C	2.928e^-5	0.267	INTERGENIC
2L	2054160	2L_2054160_SNP [dm3] 2L_2054160_SNP [dm6]	G	A	2.928e^-5	0.267	UPSTREAM Or22c INTERGENIC
2L	2054392	2L_2054392_SNP [dm3] 2L_2054392_SNP [dm6]	T	A	2.928e^-5	0.267	UPSTREAM Or22c INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2056338	2L_2056338_SNP [dm3] 2L_2056338_SNP [dm6]	G	A	2.928e^-5	0.267	INTRON Or22c
2L	2057667	2L_2057667_SNP [dm3] 2L_2057667_SNP [dm6]	A	C	2.928e^-5	0.267	SPLICE_SITE_REGION Or22c INTRON Or22c
2L	2058053	2L_2058053_SNP [dm3] 2L_2058053_SNP [dm6]	C	G	2.928e^-5	0.267	DOWNSTREAM dpr3 & 1 other INTERGENIC
2L	2058256	2L_2058256_SNP [dm3] 2L_2058256_SNP [dm6]	C	T	2.928e^-5	0.267	DOWNSTREAM dpr3 & 1 other INTERGENIC
2L	2058273	2L_2058273_SNP [dm3] 2L_2058273_SNP [dm6]	G	C	2.928e^-5	0.267	DOWNSTREAM dpr3 & 1 other INTERGENIC
3R	15499185	3R_15499185_SNP [dm3] 3R_19673463_SNP [dm6]	T	A	2.952e^-5	0.267	INTRON Naam
3L	3794166	3L_3794166_SNP [dm3] 3L_3794166_SNP [dm6]	T	G	2.971e^-5	0.267	INTRON CG32264
2R	4565547	2R_4565547_SNP [dm3] 2R_8678042_SNP [dm6]	A	C	2.972e^-5	0.267	DOWNSTREAM CG30354 INTRON Acsl
3L	9947280	3L_9947280_SNP [dm3] 3L_9954180_SNP [dm6]	G	C	2.976e^-5	0.267	INTRON CG34356
2R	11628843	2R_11628843_SNP [dm3] 2R_15741338_SNP [dm6]	G	T	2.978e^-5	0.267	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2085925	2L_2085925_SNP [dm3] 2L_2085925_SNP [dm6]	G	A	2.982e^-5	0.267	INTRON dpr3
2R	18359933	2R_18359933_SNP [dm3] 2R_22472428_SNP [dm6]	C	T	2.999e^-5	0.267	UTR_3_PRIME CG10384 DOWNSTREAM CG10384 & 1 other
3R	16718640	3R_16718640_SNP [dm3] 3R_20892918_SNP [dm6]	C	G	3.000e^-5	0.267	EXON CR44947
3R	9723959	3R_9723959_SNP [dm3] 3R_13898237_SNP [dm6]	G	A	3.010e^-5	0.267	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	22458605	3R_22458605_SNP [dm3] 3R_26632883_SNP [dm6]	C	T	3.042e^-5	0.269	UTR_3_PRIME TwdlN UPSTREAM TwdlH
2L	7122737	2L_7122737_DEL [dm3] 2L_7122737_DEL [dm6]	AA	A	3.090e^-5	0.271	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17419499	3R_17419499_SNP [dm3] 3R_21593777_SNP [dm6]	T	G	3.105e^-5	0.271	INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2057611	2L_2057611_SNP [dm3] 2L_2057611_SNP [dm6]	C	A	3.109e^-5	0.271	INTRON Or22c
2L	14759859	2L_14759859_SNP [dm3] 2L_14759859_SNP [dm6]	G	T	3.168e^-5	0.275	UPSTREAM CG4691 INTERGENIC
X	17331589	X_17331589_SNP [dm3] X_17437556_SNP [dm6]	G	A	3.192e^-5	0.276	INTRON CG12994
2R	14978173	2R_14978173_SNP [dm3] 2R_19090668_SNP [dm6]	T	A	3.246e^-5	0.279	INTRON 5-HT1A
2L	10150034	2L_10150034_DEL [dm3] 2L_10150034_DEL [dm6]	AT	A	3.255e^-5	0.279	INTRON CG44153 & 1 other
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	3.292e^-5	0.279	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
2R	4365241	2R_4365241_SNP [dm3] 2R_8477736_SNP [dm6]	G	C	3.293e^-5	0.279	INTRON mtt	TF binding site mE1_TFBS_cad
3L	12105841	3L_12105841_DEL [dm3] 3L_12112741_DEL [dm6]	ACCAGGTTATGT...	G	3.339e^-5	0.279	INTERGENIC
3R	17418798	3R_17418798_DEL [dm3] 3R_21593076_DEL [dm6]	TCTCCTAAT	T	3.347e^-5	0.279	UPSTREAM InR INTRON InR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9770490	3R_9770490_SNP [dm3] 3R_13944768_SNP [dm6]	A	G	3.349e^-5	0.279	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad
2L	2039307	2L_2039307_SNP [dm3] 2L_2039307_SNP [dm6]	C	T	3.356e^-5	0.279	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
2R	1687904	2R_1687904_SNP [dm3] 2R_5800399_SNP [dm6]	G	A	3.364e^-5	0.279	INTERGENIC
3R	17418608	3R_17418608_SNP [dm3] 3R_21592886_SNP [dm6]	A	T	3.374e^-5	0.279	UPSTREAM InR INTRON InR & 1 other	TF binding site BDTNP1_TFBS_dl
3L	2506426	3L_2506426_SNP [dm3] 3L_2506426_SNP [dm6]	G	A	3.403e^-5	0.279	UTR_3_PRIME Spn DOWNSTREAM Spn
3L	14982551	3L_14982551_SNP [dm3] 3L_14989451_SNP [dm6]	T	A	3.410e^-5	0.279	INTRON mnd	TF binding site BDTNP1_TFBS_da
2L	10150042	2L_10150042_SNP [dm3] 2L_10150042_SNP [dm6]	G	T	3.464e^-5	0.282	INTRON CG44153 & 1 other
3R	22807957	3R_22807957_SNP [dm3] 3R_26982235_SNP [dm6]	G	C	3.507e^-5	0.284	INTRON CG14253
3L	20625492	3L_20625492_SNP [dm3] 3L_20632392_SNP [dm6]	G	A	3.525e^-5	0.284	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4715420	2L_4715420_SNP [dm3] 2L_4715420_SNP [dm6]	C	T	3.530e^-5	0.284	INTRON CG34351
2R	14340720	2R_14340720_SNP [dm3] 2R_18453215_SNP [dm6]	G	A	3.547e^-5	0.284	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	22467042	3R_22467042_SNP [dm3] 3R_26641320_SNP [dm6]	C	T	3.600e^-5	0.287	DOWNSTREAM TwdlD INTERGENIC
2L	2043515	2L_2043515_SNP [dm3] 2L_2043515_SNP [dm6]	T	C	3.644e^-5	0.289	UTR_3_PRIME Su_dx_
3R	14290972	3R_14290972_SNP [dm3] 3R_18465250_SNP [dm6]	T	G	3.656e^-5	0.289	INTRON fru
2L	13360058	2L_13360058_SNP [dm3] 2L_13360058_SNP [dm6]	C	T	3.669e^-5	0.289	NON_SYNONYMOUS_CODING CG9377	TF binding site mE1_TFBS_cad
X	18889402	X_18889402_SNP [dm3] X_18995369_SNP [dm6]	A	G	3.683e^-5	0.289	INTRON CG43759
3R	26395619	3R_26395619_SNP [dm3] 3R_30569897_SNP [dm6]	C	T	3.707e^-5	0.289	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2020497	2L_2020497_SNP [dm3] 2L_2020497_SNP [dm6]	G	A	3.715e^-5	0.289	INTRON CG4238
2R	13890885	2R_13890885_SNP [dm3] 2R_18003380_SNP [dm6]	A	G	3.737e^-5	0.289	INTRON dpr13
2L	1437261	2L_1437261_SNP [dm3] 2L_1437261_SNP [dm6]	G	T	3.758e^-5	0.289	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1475411	2L_1475411_SNP [dm3] 2L_1475411_SNP [dm6]	C	T	3.763e^-5	0.289	INTERGENIC
2L	14629684	2L_14629684_SNP [dm3] 2L_14629684_SNP [dm6]	G	A	3.783e^-5	0.289	INTRON osp
3R	25915478	3R_25915478_SNP [dm3] 3R_30089756_SNP [dm6]	T	G	3.818e^-5	0.289	INTRON sima	TF binding site mE1_TFBS_Trl
3R	9801574	3R_9801574_SNP [dm3] 3R_13975852_SNP [dm6]	A	G	3.831e^-5	0.289	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13112978	2L_13112978_SNP [dm3] 2L_13112978_SNP [dm6]	A	T	3.851e^-5	0.289	INTERGENIC
2R	14472759	2R_14472759_SNP [dm3] 2R_18585254_SNP [dm6]	G	A	3.897e^-5	0.289	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2L	2061957	2L_2061957_SNP [dm3] 2L_2061957_SNP [dm6]	G	A	3.910e^-5	0.289	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3R	15599959	3R_15599959_SNP [dm3] 3R_19774237_SNP [dm6]	T	A	3.917e^-5	0.289	INTRON GluClalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	369798	2L_369798_SNP [dm3] 2L_369798_SNP [dm6]	A	T	3.920e^-5	0.289	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17016607	3R_17016607_SNP [dm3] 3R_21190885_SNP [dm6]	A	G	3.920e^-5	0.289	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2011015	2L_2011015_SNP [dm3] 2L_2011015_SNP [dm6]	A	G	3.926e^-5	0.289	UPSTREAM CG4238 & 2 others INTRON CG4238
3R	17648293	3R_17648293_SNP [dm3] 3R_21822571_SNP [dm6]	A	T	3.929e^-5	0.289	UTR_5_PRIME CASK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24336012	3R_24336012_SNP [dm3] 3R_28510290_SNP [dm6]	A	G	3.994e^-5	0.292	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
2L	14629683	2L_14629683_SNP [dm3] 2L_14629683_SNP [dm6]	T	A	4.004e^-5	0.292	INTRON osp
2R	5659791	2R_5659791_DEL [dm3] 2R_9772286_DEL [dm6]	CAGT	C	4.018e^-5	0.292		TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6789199	2R_6789199_SNP [dm3] 2R_10901694_SNP [dm6]	T	G	4.027e^-5	0.292	INTERGENIC
2L	6054577	2L_6054577_SNP [dm3] 2L_6054577_SNP [dm6]	A	T	4.074e^-5	0.293	UTR_5_PRIME CG13995 DOWNSTREAM CG9135
3R	22452321	3R_22452321_SNP [dm3] 3R_26626599_SNP [dm6]	A	G	4.077e^-5	0.293	SYNONYMOUS_CODING TwdlO UPSTREAM TwdlL	TF binding site mE1_TFBS_chinmo
2L	13092876	2L_13092876_SNP [dm3] 2L_13092876_SNP [dm6]	G	A	4.157e^-5	0.296	INTERGENIC
3L	479056	3L_479056_SNP [dm3] 3L_479056_SNP [dm6]	T	C	4.168e^-5	0.296	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	6041721	2L_6041721_SNP [dm3] 2L_6041721_SNP [dm6]	C	A	4.176e^-5	0.296	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2042021	2L_2042021_SNP [dm3] 2L_2042021_SNP [dm6]	C	A	4.183e^-5	0.296	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21369218	3R_21369218_MNP [dm3] 3R_25543496_MNP [dm6]	TCG	CTA	4.280e^-5	0.297	INTRON msi	TF binding site mE1_TFBS_cad
3R	27257003	3R_27257003_SNP [dm3] 3R_31431281_SNP [dm6]	T	G	4.282e^-5	0.297	INTRON Gprk2
2L	6046989	2L_6046989_SNP [dm3] 2L_6046989_SNP [dm6]	G	A	4.288e^-5	0.297	UTR_3_PRIME slmo & 1 other UPSTREAM ade2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26395889	3R_26395889_SNP [dm3] 3R_30570167_SNP [dm6]	T	A	4.293e^-5	0.297	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7266457	2R_7266457_SNP [dm3] 2R_11378952_SNP [dm6]	C	A	4.303e^-5	0.297	INTRON Tsp47F
2L	12326192	2L_12326192_SNP [dm3] 2L_12326192_SNP [dm6]	A	G	4.304e^-5	0.297	INTERGENIC
3L	9951961	3L_9951961_SNP [dm3] 3L_9958861_SNP [dm6]	A	T	4.313e^-5	0.297	INTRON CG34356
3R	23405311	3R_23405311_SNP [dm3] 3R_27579589_SNP [dm6]	A	C	4.323e^-5	0.297	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
2L	2041724	2L_2041724_SNP [dm3] 2L_2041724_SNP [dm6]	C	G	4.394e^-5	0.298	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6107157	2L_6107157_SNP [dm3] 2L_6107157_SNP [dm6]	A	C	4.399e^-5	0.298	INTRON stai
2R	4541964	2R_4541964_SNP [dm3] 2R_8654459_SNP [dm6]	G	C	4.401e^-5	0.298	INTRON ptc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	4115669	2R_4115669_SNP [dm3] 2R_8228164_SNP [dm6]	A	T	4.406e^-5	0.298	UTR_3_PRIME CG34217 DOWNSTREAM dpn
2L	6053890	2L_6053890_SNP [dm3] 2L_6053890_SNP [dm6]	C	T	4.447e^-5	0.299	UPSTREAM CG13995 DOWNSTREAM CG9135 INTERGENIC
2L	13086723	2L_13086723_SNP [dm3] 2L_13086723_SNP [dm6]	G	A	4.454e^-5	0.299	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6051067	2L_6051067_SNP [dm3] 2L_6051067_SNP [dm6]	G	T	4.536e^-5	0.302	SPLICE_SITE_REGION CG9135 UTR_5_PRIME CG9135 DOWNSTREAM CG12393 INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9801553	3R_9801553_INS [dm3] 3R_13975831_INS [dm6]	A	AA	4.538e^-5	0.302	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5864660	2L_5864660_SNP [dm3] 2L_5864660_SNP [dm6]	C	T	4.541e^-5	0.302	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	6046852	2L_6046852_INS [dm3] 2L_6046852_INS [dm6]	GT	TAA	4.576e^-5	0.302	UTR_3_PRIME slmo & 1 other UPSTREAM ade2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6424522	3R_6424522_SNP [dm3] 3R_10598800_SNP [dm6]	T	G	4.595e^-5	0.302	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	13983722	2R_13983722_SNP [dm3] 2R_18096217_SNP [dm6]	T	A	4.615e^-5	0.302	INTRON CG5098	TF binding site mE1_TFBS_chinmo
2R	13986663	2R_13986663_SNP [dm3] 2R_18099158_SNP [dm6]	C	T	4.615e^-5	0.302	SYNONYMOUS_CODING CG5098
3R	16282334	3R_16282334_DEL [dm3] 3R_20456612_DEL [dm6]	TA	T	4.625e^-5	0.302	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi
3R	1911702	3R_1911702_SNP [dm3] 3R_6085980_SNP [dm6]	A	G	4.632e^-5	0.302	INTERGENIC
2R	14109728	2R_14109728_SNP [dm3] 2R_18222223_SNP [dm6]	C	T	4.669e^-5	0.302	INTERGENIC	TF binding site mE1_TFBS_cad
X	17331356	X_17331356_SNP [dm3] X_17437323_SNP [dm6]	C	A	4.675e^-5	0.302	INTRON CG12994
2L	3238709	2L_3238709_SNP [dm3] 2L_3238709_SNP [dm6]	C	T	4.704e^-5	0.302	INTERGENIC
2L	13086725	2L_13086725_SNP [dm3] 2L_13086725_SNP [dm6]	A	T	4.726e^-5	0.302	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1020247	2L_1020247_INS [dm3] 2L_1020247_INS [dm6]	G	GT	4.728e^-5	0.302	INTRON IA-2
2L	14629783	2L_14629783_SNP [dm3] 2L_14629783_SNP [dm6]	C	G	4.752e^-5	0.302	INTRON osp
2L	14629786	2L_14629786_SNP [dm3] 2L_14629786_SNP [dm6]	C	A	4.752e^-5	0.302	INTRON osp
2R	14340733	2R_14340733_SNP [dm3] 2R_18453228_SNP [dm6]	A	T	4.792e^-5	0.303	NON_SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	630414	2L_630414_SNP [dm3] 2L_630414_SNP [dm6]	A	T	4.859e^-5	0.303	INTERGENIC
2L	12326187	2L_12326187_SNP [dm3] 2L_12326187_SNP [dm6]	C	A	4.883e^-5	0.303	INTERGENIC
3R	14542130	3R_14542130_SNP [dm3] 3R_18716408_SNP [dm6]	T	A	4.904e^-5	0.303	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_kn
3R	21369222	3R_21369222_SNP [dm3] 3R_25543500_SNP [dm6]	A	T	4.911e^-5	0.303	INTRON msi	TF binding site mE1_TFBS_cad
2L	13445347	2L_13445347_SNP [dm3] 2L_13445347_SNP [dm6]	G	A	4.915e^-5	0.303	SYNONYMOUS_CODING CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	7099620	X_7099620_INS [dm3] X_7205587_INS [dm6]	A	AT	4.947e^-5	0.303	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	18953871	2R_18953871_SNP [dm3] 2R_23066348_SNP [dm6]	T	C	4.964e^-5	0.303	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12817828	2L_12817828_SNP [dm3] 2L_12817828_SNP [dm6]	T	C	4.971e^-5	0.303	UTR_3_PRIME kek1
2L	1246943	2L_1246943_SNP [dm3] 2L_1246943_SNP [dm6]	C	T	4.985e^-5	0.303	INTERGENIC
X	6105526	X_6105526_SNP [dm3] X_6211493_SNP [dm6]	A	G	5.008e^-5	0.303	INTERGENIC
2R	2870395	2R_2870395_SNP [dm3] 2R_6982890_SNP [dm6]	G	A	5.010e^-5	0.303	UTR_5_PRIME CG30156 INTRON vimar & 1 other
3L	7220792	3L_7220792_SNP [dm3] 3L_7227692_SNP [dm6]	A	T	5.035e^-5	0.303	INTERGENIC
2R	12334814	2R_12334814_SNP [dm3] 2R_16447309_SNP [dm6]	G	T	5.035e^-5	0.303	NON_SYNONYMOUS_CODING CG15925
3L	18797386	3L_18797386_SNP [dm3] 3L_18804286_SNP [dm6]	T	C	5.048e^-5	0.303	SYNONYMOUS_CODING CG14073
X	5179984	X_5179984_SNP [dm3] X_5285951_SNP [dm6]	G	A	5.080e^-5	0.303	INTERGENIC
3R	21369216	3R_21369216_SNP [dm3] 3R_25543494_SNP [dm6]	A	C	5.122e^-5	0.303	INTRON msi	TF binding site mE1_TFBS_cad
3L	8840948	3L_8840948_SNP [dm3] 3L_8847848_SNP [dm6]	T	G	5.194e^-5	0.303	INTRON dally
2R	10096153	2R_10096153_SNP [dm3] 2R_14208648_SNP [dm6]	G	A	5.217e^-5	0.303	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4356621	2R_4356621_SNP [dm3] 2R_8469116_SNP [dm6]	C	A	5.235e^-5	0.303	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
2L	6062230	2L_6062230_SNP [dm3] 2L_6062230_SNP [dm6]	C	T	5.248e^-5	0.303	SYNONYMOUS_CODING CG9140 UPSTREAM CG13994	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2047168	2L_2047168_SNP [dm3] 2L_2047168_SNP [dm6]	T	A	5.281e^-5	0.303	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1586265	2L_1586265_SNP [dm3] 2L_1586265_SNP [dm6]	T	C	5.310e^-5	0.303	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna
3R	25652130	3R_25652130_SNP [dm3] 3R_29826408_SNP [dm6]	A	G	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652131	3R_25652131_SNP [dm3] 3R_29826409_SNP [dm6]	G	T	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652134	3R_25652134_SNP [dm3] 3R_29826412_SNP [dm6]	C	G	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652137	3R_25652137_DEL [dm3] 3R_29826415_DEL [dm6]	TCCAGCA	T	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652145	3R_25652145_SNP [dm3] 3R_29826423_SNP [dm6]	C	A	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652152	3R_25652152_SNP [dm3] 3R_29826430_SNP [dm6]	A	C	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652153	3R_25652153_SNP [dm3] 3R_29826431_SNP [dm6]	G	C	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652155	3R_25652155_DEL [dm3] 3R_29826433_DEL [dm6]	ATCGT	G	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652164	3R_25652164_SNP [dm3] 3R_29826442_SNP [dm6]	C	A	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	25652165	3R_25652165_SNP [dm3] 3R_29826443_SNP [dm6]	T	A	5.315e^-5	0.303	DOWNSTREAM neo & 1 other INTERGENIC
3R	26394451	3R_26394451_SNP [dm3] 3R_30568729_SNP [dm6]	C	T	5.317e^-5	0.303	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22443547	3R_22443547_SNP [dm3] 3R_26617825_SNP [dm6]	G	A	5.409e^-5	0.306	INTERGENIC
2L	1021878	2L_1021878_SNP [dm3] 2L_1021878_SNP [dm6]	G	A	5.409e^-5	0.306	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15601043	3R_15601043_SNP [dm3] 3R_19775321_SNP [dm6]	A	T	5.454e^-5	0.307	DOWNSTREAM CG11659 & 1 other INTERGENIC
2R	16053249	2R_16053249_SNP [dm3] 2R_20165744_SNP [dm6]	T	C	5.460e^-5	0.307	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13725819	2L_13725819_SNP [dm3] 2L_13725819_SNP [dm6]	C	T	5.504e^-5	0.309	INTERGENIC
2R	13845933	2R_13845933_SNP [dm3] 2R_17958428_SNP [dm6]	G	A	5.514e^-5	0.309	INTERGENIC
3R	16076592	3R_16076592_SNP [dm3] 3R_20250870_SNP [dm6]	C	T	5.578e^-5	0.31	INTERGENIC
3R	25642785	3R_25642785_SNP [dm3] 3R_29817063_SNP [dm6]	G	A	5.626e^-5	0.31	SYNONYMOUS_CODING CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2043559	2L_2043559_SNP [dm3] 2L_2043559_SNP [dm6]	G	T	5.644e^-5	0.31	UTR_3_PRIME Su_dx_ DOWNSTREAM CR45298
3R	5411248	3R_5411248_SNP [dm3] 3R_9585526_SNP [dm6]	A	T	5.664e^-5	0.31	SYNONYMOUS_CODING CG8301	TF binding site mE1_TFBS_chinmo
X	21125576	X_21125576_SNP [dm3] X_21254549_SNP [dm6]	T	C	5.667e^-5	0.31	INTRON CG32521
2L	13886243	2L_13886243_SNP [dm3] 2L_13886243_SNP [dm6]	G	T	5.676e^-5	0.31	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2038555	2L_2038555_SNP [dm3] 2L_2038555_SNP [dm6]	G	T	5.677e^-5	0.31	START_GAINED Su_dx_ UTR_5_PRIME Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	2671903	2L_2671903_SNP [dm3] 2L_2671903_SNP [dm6]	C	G	5.701e^-5	0.31	SYNONYMOUS_CODING Gr23a
2R	14262132	2R_14262132_SNP [dm3] 2R_18374627_SNP [dm6]	G	T	5.709e^-5	0.31	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15255908	2R_15255908_SNP [dm3] 2R_19368403_SNP [dm6]	C	T	5.711e^-5	0.31	SYNONYMOUS_CODING CG9416
2R	18358080	2R_18358080_SNP [dm3] 2R_22470575_SNP [dm6]	A	C	5.712e^-5	0.31	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	17650801	2R_17650801_SNP [dm3] 2R_21763296_SNP [dm6]	T	C	5.741e^-5	0.31	UPSTREAM CG43982 EXON CR43983
2R	14340960	2R_14340960_SNP [dm3] 2R_18453455_SNP [dm6]	G	A	5.758e^-5	0.31	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
X	15329139	X_15329139_SNP [dm3] X_15435106_SNP [dm6]	A	T	5.841e^-5	0.313	INTRON Cngl
2L	5959493	2L_5959493_SNP [dm3] 2L_5959493_SNP [dm6]	T	C	5.855e^-5	0.313	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
X	10308463	X_10308463_SNP [dm3] X_10414430_SNP [dm6]	G	C	5.862e^-5	0.313	INTRON CG32683
3L	14812919	3L_14812919_SNP [dm3] 3L_14819819_SNP [dm6]	T	C	5.881e^-5	0.313	INTRON CG17839
3L	11296911	3L_11296911_SNP [dm3] 3L_11303811_SNP [dm6]	A	G	5.927e^-5	0.315	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5869176	X_5869176_SNP [dm3] X_5975143_SNP [dm6]	T	C	5.993e^-5	0.317	INTRON Grip
3R	18163782	3R_18163782_SNP [dm3] 3R_22338060_SNP [dm6]	C	T	5.998e^-5	0.317	INTRON CG5388
2L	9811371	2L_9811371_SNP [dm3] 2L_9811371_SNP [dm6]	C	T	6.054e^-5	0.319	INTRON nAChRalpha6
2L	13745445	2L_13745445_DEL [dm3] 2L_13745445_DEL [dm6]	TTTAA	T	6.184e^-5	0.323	INTERGENIC
2R	3260366	2R_3260366_SNP [dm3] 2R_7372861_SNP [dm6]	G	A	6.210e^-5	0.323	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	9763912	3L_9763912_SNP [dm3] 3L_9770812_SNP [dm6]	C	A	6.211e^-5	0.323	INTRON CG8177
2R	19649035	2R_19649035_SNP [dm3] 2R_23761512_SNP [dm6]	A	G	6.214e^-5	0.323	INTRON CG9850
2L	1913278	2L_1913278_SNP [dm3] 2L_1913278_SNP [dm6]	A	C	6.214e^-5	0.323	UTR_5_PRIME CG7337 INTRON CG7337
3R	15600031	3R_15600031_SNP [dm3] 3R_19774309_SNP [dm6]	G	T	6.259e^-5	0.324	INTRON GluClalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10147993	2L_10147993_INS [dm3] 2L_10147993_INS [dm6]	A	TT	6.287e^-5	0.325	INTRON CG44153 & 1 other
3R	26414663	3R_26414663_SNP [dm3] 3R_30588941_SNP [dm6]	A	G	6.350e^-5	0.327	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11315285	2R_11315285_SNP [dm3] 2R_15427780_SNP [dm6]	G	A	6.364e^-5	0.327	SYNONYMOUS_CODING CG34188 INTRON CG43729
3R	11554483	3R_11554483_SNP [dm3] 3R_15728761_SNP [dm6]	C	T	6.378e^-5	0.327	INTERGENIC
2R	18596000	2R_18596000_SNP [dm3] 2R_22708495_SNP [dm6]	C	T	6.397e^-5	0.327	DOWNSTREAM Obp58d INTRON CG30275 EXON CR43735
3R	21369303	3R_21369303_SNP [dm3] 3R_25543581_SNP [dm6]	G	A	6.448e^-5	0.329	INTRON msi	TF binding site mE1_TFBS_cad
2L	13726592	2L_13726592_SNP [dm3] 2L_13726592_SNP [dm6]	T	C	6.484e^-5	0.329	INTERGENIC
2L	14629770	2L_14629770_SNP [dm3] 2L_14629770_SNP [dm6]	T	A	6.501e^-5	0.329	INTRON osp
3R	20662546	3R_20662546_SNP [dm3] 3R_24836824_SNP [dm6]	T	C	6.546e^-5	0.33	UTR_5_PRIME sosie DOWNSTREAM CR45216 INTRON sosie
2L	14259457	2L_14259457_SNP [dm3] 2L_14259457_SNP [dm6]	G	A	6.570e^-5	0.33	INTERGENIC
X	3563669	X_3563669_SNP [dm3] X_3669636_SNP [dm6]	G	T	6.573e^-5	0.33	SYNONYMOUS_CODING Parg DOWNSTREAM Ilp7
2L	13128030	2L_13128030_SNP [dm3] 2L_13128030_SNP [dm6]	G	T	6.604e^-5	0.33	INTERGENIC
2R	12501822	2R_12501822_SNP [dm3] 2R_16614317_SNP [dm6]	T	A	6.624e^-5	0.33	INTRON CG5065
X	2934469	X_2934469_SNP [dm3] X_3040436_SNP [dm6]	T	C	6.626e^-5	0.33	INTRON kirre
2R	12501827	2R_12501827_SNP [dm3] 2R_16614322_SNP [dm6]	T	C	6.649e^-5	0.331	INTRON CG5065
2L	12818064	2L_12818064_SNP [dm3] 2L_12818064_SNP [dm6]	T	G	6.711e^-5	0.332	UTR_3_PRIME kek1
3R	22465767	3R_22465767_SNP [dm3] 3R_26640045_SNP [dm6]	A	T	6.715e^-5	0.332	START_GAINED TwdlD UTR_5_PRIME TwdlD
3R	27442098	3R_27442098_SNP [dm3] 3R_31616376_SNP [dm6]	G	T	6.753e^-5	0.333	START_GAINED CG1792 UTR_5_PRIME CG1792 UPSTREAM CG11539	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6385232	3L_6385232_SNP [dm3] 3L_6392132_SNP [dm6]	G	A	6.787e^-5	0.334	INTERGENIC
3L	8841144	3L_8841144_SNP [dm3] 3L_8848044_SNP [dm6]	T	C	6.805e^-5	0.334	INTRON dally
2L	2085782	2L_2085782_SNP [dm3] 2L_2085782_SNP [dm6]	A	G	6.850e^-5	0.335	INTRON dpr3
2L	1754554	2L_1754554_SNP [dm3] 2L_1754554_SNP [dm6]	G	C	6.868e^-5	0.335	DOWNSTREAM Gr22f INTERGENIC
3R	26395994	3R_26395994_SNP [dm3] 3R_30570272_SNP [dm6]	G	C	6.905e^-5	0.336	UPSTREAM tmod INTRON tmod	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1658078	2L_1658078_SNP [dm3] 2L_1658078_SNP [dm6]	C	T	6.947e^-5	0.336	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19651809	2R_19651809_SNP [dm3] 2R_23764286_SNP [dm6]	T	G	6.960e^-5	0.336	INTRON CG9850
3R	8507902	3R_8507902_SNP [dm3] 3R_12682180_SNP [dm6]	T	C	6.971e^-5	0.336	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
2R	10176103	2R_10176103_SNP [dm3] 2R_14288598_SNP [dm6]	G	T	6.973e^-5	0.336	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_inv
2R	12485197	2R_12485197_SNP [dm3] 2R_16597692_SNP [dm6]	A	G	7.010e^-5	0.336	INTRON CG8303
3R	23887983	3R_23887983_SNP [dm3] 3R_28062261_SNP [dm6]	A	T	7.031e^-5	0.336	INTRON CG34362
3R	26498397	3R_26498397_SNP [dm3] 3R_30672675_SNP [dm6]	G	C	7.045e^-5	0.336	INTERGENIC
2R	16501771	2R_16501771_SNP [dm3] 2R_20614266_SNP [dm6]	A	T	7.066e^-5	0.336	INTRON Hil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7946646	3L_7946646_SNP [dm3] 3L_7953546_SNP [dm6]	G	A	7.068e^-5	0.336	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6314850	2L_6314850_INS [dm3] 2L_6314850_INS [dm6]	T	TGTTAGGAAAT...	7.079e^-5	0.336	INTRON Ddr
2L	958456	2L_958456_SNP [dm3] 2L_958456_SNP [dm6]	A	G	7.101e^-5	0.336	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3125118	2L_3125118_SNP [dm3] 2L_3125118_SNP [dm6]	T	G	7.108e^-5	0.336	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1623860	2L_1623860_SNP [dm3] 2L_1623860_SNP [dm6]	C	T	7.171e^-5	0.337	UPSTREAM CR44603 EXON CR44603
X	17331528	X_17331528_SNP [dm3] X_17437495_SNP [dm6]	G	C	7.180e^-5	0.337	INTRON CG12994
2R	3194398	2R_3194398_DEL [dm3] 2R_7306893_DEL [dm6]	CC	C	7.197e^-5	0.337	INTERGENIC
2L	1321102	2L_1321102_SNP [dm3] 2L_1321102_SNP [dm6]	T	A	7.207e^-5	0.337	INTERGENIC
3R	14649488	3R_14649488_SNP [dm3] 3R_18823766_SNP [dm6]	G	T	7.238e^-5	0.337	INTRON CG18208
3R	26387193	3R_26387193_SNP [dm3] 3R_30561471_SNP [dm6]	C	A	7.251e^-5	0.337	INTRON tmod
3L	19655694	3L_19655694_SNP [dm3] 3L_19662594_SNP [dm6]	G	T	7.270e^-5	0.337	INTRON tey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14332145	2L_14332145_SNP [dm3] 2L_14332145_SNP [dm6]	T	C	7.272e^-5	0.337	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
2L	10180706	2L_10180706_SNP [dm3] 2L_10180706_SNP [dm6]	T	C	7.293e^-5	0.337	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	14341020	2R_14341020_SNP [dm3] 2R_18453515_SNP [dm6]	C	A	7.344e^-5	0.338	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	6047011	2L_6047011_SNP [dm3] 2L_6047011_SNP [dm6]	G	A	7.366e^-5	0.338	UTR_3_PRIME slmo & 1 other UPSTREAM ade2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20127078	2R_20127078_SNP [dm3] 2R_24239555_SNP [dm6]	G	T	7.413e^-5	0.339	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2085722	2L_2085722_SNP [dm3] 2L_2085722_SNP [dm6]	T	C	7.417e^-5	0.339	INTRON dpr3
3R	22807963	3R_22807963_SNP [dm3] 3R_26982241_SNP [dm6]	G	C	7.487e^-5	0.339	INTRON CG14253
2L	2085710	2L_2085710_SNP [dm3] 2L_2085710_SNP [dm6]	T	C	7.496e^-5	0.339	INTRON dpr3
2L	2085763	2L_2085763_SNP [dm3] 2L_2085763_SNP [dm6]	C	A	7.547e^-5	0.339	INTRON dpr3
2L	2085800	2L_2085800_SNP [dm3] 2L_2085800_SNP [dm6]	G	A	7.547e^-5	0.339	INTRON dpr3
3L	18312136	3L_18312136_SNP [dm3] 3L_18319036_SNP [dm6]	A	G	7.558e^-5	0.339	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20056493	2L_20056493_SNP [dm3] 2L_20056493_SNP [dm6]	A	G	7.563e^-5	0.339	DOWNSTREAM sNPF INTERGENIC
3R	21510307	3R_21510307_SNP [dm3] 3R_25684585_SNP [dm6]	G	C	7.565e^-5	0.339	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	17865210	3R_17865210_SNP [dm3] 3R_22039488_SNP [dm6]	A	G	7.589e^-5	0.339	DOWNSTREAM pit INTERGENIC
2L	922246	2L_922246_SNP [dm3] 2L_922246_SNP [dm6]	C	A	7.602e^-5	0.339	UPSTREAM CG4341 INTERGENIC
2L	6024544	2L_6024544_SNP [dm3] 2L_6024544_SNP [dm6]	C	T	7.614e^-5	0.339	UPSTREAM CG9107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	12091240	3L_12091240_SNP [dm3] 3L_12098140_SNP [dm6]	T	C	7.639e^-5	0.339	INTERGENIC
3L	15258649	3L_15258649_SNP [dm3] 3L_15265549_SNP [dm6]	T	C	7.665e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11407821	3L_11407821_SNP [dm3] 3L_11414721_SNP [dm6]	A	G	7.690e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2726603	3L_2726603_SNP [dm3] 3L_2726603_SNP [dm6]	C	A	7.706e^-5	0.339	INTRON Mrtf
2L	1331991	2L_1331991_SNP [dm3] 2L_1331991_SNP [dm6]	T	G	7.708e^-5	0.339	INTERGENIC
2L	8050068	2L_8050068_SNP [dm3] 2L_8050068_SNP [dm6]	C	T	7.720e^-5	0.339	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
2L	2038752	2L_2038752_SNP [dm3] 2L_2038752_SNP [dm6]	C	T	7.729e^-5	0.339	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	5375255	3L_5375255_SNP [dm3] 3L_5382155_SNP [dm6]	G	C	7.730e^-5	0.339	INTRON Ir64a
3R	15243626	3R_15243626_SNP [dm3] 3R_19417904_SNP [dm6]	T	C	7.796e^-5	0.341	INTRON CG31221
3L	11296886	3L_11296886_SNP [dm3] 3L_11303786_SNP [dm6]	A	G	7.842e^-5	0.341	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3343537	3L_3343537_SNP [dm3] 3L_3343537_SNP [dm6]	T	A	7.861e^-5	0.341	INTRON kst
3R	9615915	3R_9615915_SNP [dm3] 3R_13790193_SNP [dm6]	C	G	7.905e^-5	0.341	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	4670272	3L_4670272_SNP [dm3] 3L_4670272_SNP [dm6]	G	A	7.916e^-5	0.341	SYNONYMOUS_CODING axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13489772	2L_13489772_SNP [dm3] 2L_13489772_SNP [dm6]	C	A	7.917e^-5	0.341	INTRON CG42784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9215698	2R_9215698_SNP [dm3] 2R_13328193_SNP [dm6]	A	C	7.921e^-5	0.341	INTERGENIC
3R	26347302	3R_26347302_SNP [dm3] 3R_30521580_SNP [dm6]	G	A	7.956e^-5	0.342	INTRON jdp
X	15199297	X_15199297_SNP [dm3] X_15305264_SNP [dm6]	T	G	7.988e^-5	0.342	INTRON gce
2L	1470216	2L_1470216_SNP [dm3] 2L_1470216_SNP [dm6]	T	C	8.011e^-5	0.342	INTERGENIC
3R	22449147	3R_22449147_SNP [dm3] 3R_26623425_SNP [dm6]	A	G	8.042e^-5	0.342	INTRON TwdlB
2L	1101061	2L_1101061_SNP [dm3] 2L_1101061_SNP [dm6]	G	A	8.054e^-5	0.342	INTRON CG4629
2L	13359852	2L_13359852_SNP [dm3] 2L_13359852_SNP [dm6]	A	T	8.083e^-5	0.342	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359859	2L_13359859_DEL [dm3] 2L_13359859_DEL [dm6]	CTAC	C	8.083e^-5	0.342	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9912614	2R_9912614_SNP [dm3] 2R_14025109_SNP [dm6]	G	T	8.096e^-5	0.342	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1470247	2L_1470247_SNP [dm3] 2L_1470247_SNP [dm6]	T	A	8.107e^-5	0.342	INTERGENIC
2R	11320227	2R_11320227_SNP [dm3] 2R_15432722_SNP [dm6]	A	G	8.123e^-5	0.342	INTRON CG43729
3R	27440984	3R_27440984_SNP [dm3] 3R_31615262_SNP [dm6]	G	T	8.176e^-5	0.342	UTR_3_PRIME Med DOWNSTREAM CG11539 & 1 other
2L	13359774	2L_13359774_SNP [dm3] 2L_13359774_SNP [dm6]	G	A	8.190e^-5	0.342	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9087723	2R_9087723_SNP [dm3] 2R_13200218_SNP [dm6]	T	A	8.202e^-5	0.342	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12092136	3L_12092136_SNP [dm3] 3L_12099036_SNP [dm6]	A	G	8.213e^-5	0.342	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6765953	3R_6765953_SNP [dm3] 3R_10940231_SNP [dm6]	C	G	8.223e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_inv
X	18889401	X_18889401_SNP [dm3] X_18995368_SNP [dm6]	G	A	8.223e^-5	0.342	INTRON CG43759
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	8.262e^-5	0.343	INTRON CG15465 & 1 other
3R	26394718	3R_26394718_SNP [dm3] 3R_30568996_SNP [dm6]	G	A	8.290e^-5	0.343	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14167261	3R_14167261_SNP [dm3] 3R_18341539_SNP [dm6]	C	T	8.298e^-5	0.343	INTRON CG15803
2L	1125632	2L_1125632_SNP [dm3] 2L_1125632_SNP [dm6]	A	T	8.356e^-5	0.344	INTRON Pino
X	18891202	X_18891202_DEL [dm3] X_18997169_DEL [dm6]	TCCGTT	T	8.404e^-5	0.344	INTRON CG43759
3L	12035160	3L_12035160_SNP [dm3] 3L_12042060_SNP [dm6]	G	A	8.487e^-5	0.344	UPSTREAM CG6793 INTRON rols
X	17331586	X_17331586_SNP [dm3] X_17437553_SNP [dm6]	G	A	8.511e^-5	0.344	INTRON CG12994
2L	1548662	2L_1548662_SNP [dm3] 2L_1548662_SNP [dm6]	G	A	8.530e^-5	0.344	INTERGENIC
3L	1067665	3L_1067665_SNP [dm3] 3L_1067665_SNP [dm6]	T	A	8.544e^-5	0.344	INTRON bab1
3R	15589648	3R_15589648_SNP [dm3] 3R_19763926_SNP [dm6]	A	T	8.544e^-5	0.344	INTRON GluClalpha
3R	15618279	3R_15618279_SNP [dm3] 3R_19792557_SNP [dm6]	G	C	8.591e^-5	0.344	INTERGENIC
2L	1918287	2L_1918287_SNP [dm3] 2L_1918287_SNP [dm6]	G	A	8.614e^-5	0.344	INTRON CG7337
2L	12818112	2L_12818112_SNP [dm3] 2L_12818112_SNP [dm6]	A	G	8.664e^-5	0.344	UTR_3_PRIME kek1
3R	26368276	3R_26368276_SNP [dm3] 3R_30542554_SNP [dm6]	C	T	8.671e^-5	0.344	INTRON tmod
3R	15600984	3R_15600984_SNP [dm3] 3R_19775262_SNP [dm6]	G	C	8.672e^-5	0.344	DOWNSTREAM CG11659 & 1 other INTERGENIC
X	13438808	X_13438808_SNP [dm3] X_13544775_SNP [dm6]	A	T	8.676e^-5	0.344	UTR_3_PRIME Cpr12A
2L	6329243	2L_6329243_SNP [dm3] 2L_6329243_SNP [dm6]	A	G	8.698e^-5	0.344	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17073095	3R_17073095_SNP [dm3] 3R_21247373_SNP [dm6]	A	G	8.701e^-5	0.344	UTR_5_PRIME ETHR
2L	1087443	2L_1087443_SNP [dm3] 2L_1087443_SNP [dm6]	C	A	8.707e^-5	0.344	INTRON CG4629
3R	22807975	3R_22807975_SNP [dm3] 3R_26982253_SNP [dm6]	T	C	8.717e^-5	0.344	INTRON CG14253
2L	14579297	2L_14579297_SNP [dm3] 2L_14579297_SNP [dm6]	T	G	8.722e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	18063638	3L_18063638_SNP [dm3] 3L_18070538_SNP [dm6]	C	A	8.753e^-5	0.344	UTR_3_PRIME CG44005 UPSTREAM CG44006
3R	13058505	3R_13058505_SNP [dm3] 3R_17232783_SNP [dm6]	C	T	8.782e^-5	0.344	NON_SYNONYMOUS_CODING beat-IIb
2R	13151447	2R_13151447_SNP [dm3] 2R_17263942_SNP [dm6]	A	C	8.794e^-5	0.344	INTRON mbl	TF binding site mE1_TFBS_Trl
3R	17418243	3R_17418243_SNP [dm3] 3R_21592521_SNP [dm6]	A	G	8.802e^-5	0.344	UPSTREAM InR INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7380602	2R_7380602_SNP [dm3] 2R_11493097_SNP [dm6]	G	T	8.806e^-5	0.344	INTRON inv
3L	1111393	3L_1111393_SNP [dm3] 3L_1111393_SNP [dm6]	G	A	8.824e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9801595	3R_9801595_SNP [dm3] 3R_13975873_SNP [dm6]	T	A	8.828e^-5	0.344	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6043978	2L_6043978_SNP [dm3] 2L_6043978_SNP [dm6]	A	G	8.830e^-5	0.344	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5697545	2L_5697545_SNP [dm3] 2L_5697545_SNP [dm6]	C	T	8.832e^-5	0.344	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	10176407	2R_10176407_SNP [dm3] 2R_14288902_SNP [dm6]	G	C	8.884e^-5	0.345	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1658151	2L_1658151_DEL [dm3] 2L_1658151_DEL [dm6]	GAATCTT	C	8.891e^-5	0.345	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	25915475	3R_25915475_INS [dm3] 3R_30089753_INS [dm6]	T	TGAAA	8.977e^-5	0.346	INTRON sima	TF binding site mE1_TFBS_Trl
3L	9915674	3L_9915674_SNP [dm3] 3L_9922574_SNP [dm6]	G	T	8.983e^-5	0.346	INTRON CG34356
2R	13988630	2R_13988630_SNP [dm3] 2R_18101125_SNP [dm6]	G	T	8.989e^-5	0.346	UTR_3_PRIME CG5756 DOWNSTREAM CG5098	TF binding site mE1_TFBS_cad
3R	16348882	3R_16348882_SNP [dm3] 3R_20523160_SNP [dm6]	G	A	9.022e^-5	0.346	INTERGENIC
3R	16348911	3R_16348911_SNP [dm3] 3R_20523189_SNP [dm6]	T	A	9.022e^-5	0.346	INTERGENIC
3R	15633366	3R_15633366_SNP [dm3] 3R_19807644_SNP [dm6]	A	C	9.040e^-5	0.346	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1918378	2L_1918378_DEL [dm3] 2L_1918378_DEL [dm6]	GTGAGATTGGATGATGGTG...	G	9.069e^-5	0.346	INTRON CG7337
2L	1918422	2L_1918422_SNP [dm3] 2L_1918422_SNP [dm6]	T	A	9.069e^-5	0.346	INTRON CG7337
3R	26393534	3R_26393534_SNP [dm3] 3R_30567812_SNP [dm6]	C	G	9.089e^-5	0.346	INTRON tmod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13977187	2R_13977187_SNP [dm3] 2R_18089682_SNP [dm6]	A	C	9.114e^-5	0.346	INTRON CG34386
2L	10218969	2L_10218969_INS [dm3] 2L_10218969_INS [dm6]	C	CTATACGGTTTTC...	9.114e^-5	0.346	INTRON Npc1a
2L	2058488	2L_2058488_SNP [dm3] 2L_2058488_SNP [dm6]	T	A	9.146e^-5	0.346	DOWNSTREAM dpr3 & 1 other INTERGENIC
3R	27441864	3R_27441864_DEL [dm3] 3R_31616142_DEL [dm6]	ACTGCA	A	9.184e^-5	0.347	UTR_5_PRIME CG11539 UPSTREAM CG1792 & 1 other DOWNSTREAM Med	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1247055	2L_1247055_SNP [dm3] 2L_1247055_SNP [dm6]	A	T	9.186e^-5	0.347	INTERGENIC
X	14507291	X_14507291_SNP [dm3] X_14613258_SNP [dm6]	G	A	9.247e^-5	0.348	INTRON NetA
3R	22471828	3R_22471828_SNP [dm3] 3R_26646106_SNP [dm6]	C	T	9.262e^-5	0.348	UTR_3_PRIME beat-VII	TF binding site mE1_TFBS_kn
2R	19722240	2R_19722240_SNP [dm3] 2R_23834717_SNP [dm6]	G	A	9.296e^-5	0.348	INTRON CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6824072	2L_6824072_SNP [dm3] 2L_6824072_SNP [dm6]	T	C	9.303e^-5	0.348	INTRON sens-2
3R	15589638	3R_15589638_SNP [dm3] 3R_19763916_SNP [dm6]	T	G	9.311e^-5	0.348	INTRON GluClalpha
3R	26258213	3R_26258213_SNP [dm3] 3R_30432491_SNP [dm6]	G	C	9.369e^-5	0.349	NON_SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16502149	2R_16502149_SNP [dm3] 2R_20614644_SNP [dm6]	T	G	9.493e^-5	0.352	SYNONYMOUS_CODING Hil	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10095491	2R_10095491_SNP [dm3] 2R_14207986_SNP [dm6]	C	A	9.518e^-5	0.352	INTRON Sox15	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7114789	2R_7114789_SNP [dm3] 2R_11227284_SNP [dm6]	T	G	9.521e^-5	0.352	SYNONYMOUS_CODING metro DOWNSTREAM CG7737	TF binding site mE1_TFBS_cad
3R	16189348	3R_16189348_SNP [dm3] 3R_20363626_SNP [dm6]	T	C	9.531e^-5	0.352	INTERGENIC
2L	1543163	2L_1543163_SNP [dm3] 2L_1543163_SNP [dm6]	G	A	9.541e^-5	0.352	INTERGENIC
3R	15601001	3R_15601001_SNP [dm3] 3R_19775279_SNP [dm6]	C	T	9.575e^-5	0.353	DOWNSTREAM CG11659 & 1 other INTERGENIC
3L	17971884	3L_17971884_SNP [dm3] 3L_17978784_SNP [dm6]	C	T	9.605e^-5	0.353	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	946650	2L_946650_SNP [dm3] 2L_946650_SNP [dm6]	A	G	9.667e^-5	0.354	INTRON CG4341
2R	15442503	2R_15442503_SNP [dm3] 2R_19554998_SNP [dm6]	T	C	9.716e^-5	0.354	INTRON sm
2L	2085953	2L_2085953_SNP [dm3] 2L_2085953_SNP [dm6]	T	G	9.730e^-5	0.354	INTRON dpr3
2R	3524886	2R_3524886_SNP [dm3] 2R_7637381_SNP [dm6]	C	G	9.731e^-5	0.354	UPSTREAM CG43340 INTRON CG43340
2L	2085571	2L_2085571_SNP [dm3] 2L_2085571_SNP [dm6]	T	C	9.753e^-5	0.354	INTRON dpr3
2L	13044848	2L_13044848_SNP [dm3] 2L_13044848_SNP [dm6]	T	A	9.755e^-5	0.354	INTRON CG9932
2R	21133611	2R_21133611_SNP [dm3] 2R_25246088_SNP [dm6]	A	G	9.769e^-5	0.354	UPSTREAM CG30429 INTRON CG9380
2R	5873286	2R_5873286_SNP [dm3] 2R_9985781_SNP [dm6]	C	T	9.786e^-5	0.354	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6547469	3R_6547469_SNP [dm3] 3R_10721747_SNP [dm6]	A	G	9.794e^-5	0.354	INTERGENIC
3L	15693658	3L_15693658_SNP [dm3] 3L_15700558_SNP [dm6]	T	A	9.805e^-5	0.354	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	22450088	3R_22450088_SNP [dm3] 3R_26624366_SNP [dm6]	T	C	9.838e^-5	0.354	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2L	1828131	2L_1828131_SNP [dm3] 2L_1828131_SNP [dm6]	G	A	9.895e^-5	0.355	INTERGENIC
3R	23040910	3R_23040910_SNP [dm3] 3R_27215188_SNP [dm6]	C	G	9.938e^-5	0.356	INTERGENIC
3R	9542553	3R_9542553_SNP [dm3] 3R_13716831_SNP [dm6]	G	T	9.960e^-5	0.356	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	1454379	3L_1454379_SNP [dm3] 3L_1454379_SNP [dm6]	T	A	9.965e^-5	0.356	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	26185552	3R_26185552_SNP [dm3] 3R_30359830_SNP [dm6]	T	C	9.977e^-5	0.356	INTRON hdc	TF binding site mE1_TFBS_chinmo
2L	985066	2L_985066_SNP [dm3] 2L_985066_SNP [dm6]	C	A	1.006e^-4	0.357	INTERGENIC
2R	13983576	2R_13983576_SNP [dm3] 2R_18096071_SNP [dm6]	A	T	1.008e^-4	0.357	INTRON CG5098	TF binding site mE1_TFBS_sens
3L	8165544	3L_8165544_SNP [dm3] 3L_8172444_SNP [dm6]	A	G	1.009e^-4	0.357	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
3R	22450092	3R_22450092_SNP [dm3] 3R_26624370_SNP [dm6]	T	C	1.010e^-4	0.357	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
3L	9956694	3L_9956694_SNP [dm3] 3L_9963594_SNP [dm6]	G	T	1.012e^-4	0.357	INTRON CG34356
X	18983957	X_18983957_SNP [dm3] X_19089924_SNP [dm6]	G	T	1.017e^-4	0.358	INTERGENIC
3R	17418297	3R_17418297_SNP [dm3] 3R_21592575_SNP [dm6]	G	A	1.017e^-4	0.358	SPLICE_SITE_REGION CR43653 UPSTREAM InR INTRON InR EXON CR43653	TF binding site mE1_TFBS_Trl
2L	10150300	2L_10150300_SNP [dm3] 2L_10150300_SNP [dm6]	A	G	1.023e^-4	0.359	INTRON CG44153 & 1 other
X	8751344	X_8751344_SNP [dm3] X_8857311_SNP [dm6]	G	T	1.027e^-4	0.36	INTRON CG12075
3R	22466041	3R_22466041_SNP [dm3] 3R_26640319_SNP [dm6]	C	T	1.030e^-4	0.36	SYNONYMOUS_CODING TwdlD
2R	14177593	2R_14177593_DEL [dm3] 2R_18290088_DEL [dm6]	GG	G	1.037e^-4	0.361	INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	15833028	3R_15833028_SNP [dm3] 3R_20007306_SNP [dm6]	T	C	1.039e^-4	0.361	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21152786	X_21152786_SNP [dm3] X_21281759_SNP [dm6]	C	T	1.044e^-4	0.361	UPSTREAM CG32521 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	27256966	3R_27256966_SNP [dm3] 3R_31431244_SNP [dm6]	T	C	1.046e^-4	0.361	INTRON Gprk2
2L	11463877	2L_11463877_SNP [dm3] 2L_11463877_SNP [dm6]	A	T	1.047e^-4	0.361	INTERGENIC
3R	15565999	3R_15565999_SNP [dm3] 3R_19740277_SNP [dm6]	A	G	1.048e^-4	0.361	INTRON GluClalpha
2R	16664153	2R_16664153_SNP [dm3] 2R_20776648_SNP [dm6]	A	G	1.050e^-4	0.361	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
2L	1748675	2L_1748675_SNP [dm3] 2L_1748675_SNP [dm6]	A	T	1.054e^-4	0.361	INTRON CG17646
3R	8507889	3R_8507889_SNP [dm3] 3R_12682167_SNP [dm6]	A	T	1.055e^-4	0.361	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
2L	4843696	2L_4843696_SNP [dm3] 2L_4843696_SNP [dm6]	C	T	1.055e^-4	0.361	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13983915	2R_13983915_SNP [dm3] 2R_18096410_SNP [dm6]	G	T	1.055e^-4	0.361	SYNONYMOUS_CODING CG5098	TF binding site mE1_TFBS_chinmo
3L	14266471	3L_14266471_SNP [dm3] 3L_14273371_SNP [dm6]	A	G	1.056e^-4	0.361	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1034435	2L_1034435_SNP [dm3] 2L_1034435_SNP [dm6]	C	T	1.063e^-4	0.362	START_GAINED IA-2 UTR_5_PRIME IA-2 INTRON IA-2
2R	17668237	2R_17668237_SNP [dm3] 2R_21780732_SNP [dm6]	T	A	1.064e^-4	0.362	INTERGENIC
2L	1282612	2L_1282612_SNP [dm3] 2L_1282612_SNP [dm6]	C	T	1.064e^-4	0.362	INTRON robo3
2L	2084360	2L_2084360_SNP [dm3] 2L_2084360_SNP [dm6]	C	T	1.067e^-4	0.362	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_sbb
3L	18797371	3L_18797371_SNP [dm3] 3L_18804271_SNP [dm6]	G	A	1.068e^-4	0.362	SYNONYMOUS_CODING CG14073
3L	15379932	3L_15379932_SNP [dm3] 3L_15386832_SNP [dm6]	G	A	1.069e^-4	0.362	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10384032	2L_10384032_SNP [dm3] 2L_10384032_SNP [dm6]	T	C	1.072e^-4	0.362	SYNONYMOUS_CODING CG5096 DOWNSTREAM cdc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14263530	2L_14263530_DEL [dm3] 2L_14263530_DEL [dm6]	AAAGAAA	A	1.080e^-4	0.362	UTR_5_PRIME wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	14263565	2L_14263565_SNP [dm3] 2L_14263565_SNP [dm6]	A	G	1.080e^-4	0.362	UTR_5_PRIME wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	22466645	3R_22466645_SNP [dm3] 3R_26640923_SNP [dm6]	G	A	1.081e^-4	0.362	UTR_3_PRIME TwdlD
2L	8050464	2L_8050464_SNP [dm3] 2L_8050464_SNP [dm6]	A	G	1.083e^-4	0.362	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17418259	3R_17418259_SNP [dm3] 3R_21592537_SNP [dm6]	G	A	1.085e^-4	0.362	UPSTREAM InR INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2084615	2L_2084615_SNP [dm3] 2L_2084615_SNP [dm6]	C	T	1.087e^-4	0.362	DOWNSTREAM CR44055 INTRON dpr3
2L	5959383	2L_5959383_SNP [dm3] 2L_5959383_SNP [dm6]	A	C	1.087e^-4	0.362	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	12504770	2L_12504770_SNP [dm3] 2L_12504770_SNP [dm6]	A	C	1.088e^-4	0.362	START_GAINED bun UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13157373	2R_13157373_SNP [dm3] 2R_17269868_SNP [dm6]	G	A	1.089e^-4	0.362	INTRON mbl
2L	11463885	2L_11463885_SNP [dm3] 2L_11463885_SNP [dm6]	A	G	1.101e^-4	0.364	INTERGENIC
X	19886490	X_19886490_DEL [dm3] X_19992457_DEL [dm6]	GTGTGGGAGTTGGGAGGTGG...	G	1.103e^-4	0.364	INTERGENIC
2L	1282620	2L_1282620_SNP [dm3] 2L_1282620_SNP [dm6]	T	C	1.104e^-4	0.364	INTRON robo3
3L	3782522	3L_3782522_SNP [dm3] 3L_3782522_SNP [dm6]	A	T	1.105e^-4	0.364	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6030464	2L_6030464_SNP [dm3] 2L_6030464_SNP [dm6]	G	A	1.114e^-4	0.364	INTRON CG9109
3R	21167981	3R_21167981_DEL [dm3] 3R_25342259_DEL [dm6]	ACTGCAAACGGAGCTCAAAG...	A	1.115e^-4	0.364	CODON_DELETION rha
2L	6064715	2L_6064715_SNP [dm3] 2L_6064715_SNP [dm6]	C	G	1.118e^-4	0.364	NON_SYNONYMOUS_CODING Fbw5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	27442115	3R_27442115_SNP [dm3] 3R_31616393_SNP [dm6]	A	C	1.120e^-4	0.364	UTR_5_PRIME CG1792 UPSTREAM CG11539	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12600793	2L_12600793_SNP [dm3] 2L_12600793_SNP [dm6]	T	C	1.122e^-4	0.364	INTRON nub
3R	16348983	3R_16348983_INS [dm3] 3R_20523261_INS [dm6]	C	CTAAAAAATAGG...	1.124e^-4	0.364	INTERGENIC
X	9770807	X_9770807_SNP [dm3] X_9876774_SNP [dm6]	A	C	1.125e^-4	0.364	UPSTREAM CG15247 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14291696	2L_14291696_SNP [dm3] 2L_14291696_SNP [dm6]	G	C	1.126e^-4	0.364	INTRON wb EXON CR43639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10176409	2R_10176409_SNP [dm3] 2R_14288904_SNP [dm6]	T	G	1.128e^-4	0.364	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23965343	3R_23965343_SNP [dm3] 3R_28139621_SNP [dm6]	G	A	1.130e^-4	0.364	INTERGENIC
3R	23965344	3R_23965344_SNP [dm3] 3R_28139622_SNP [dm6]	T	A	1.130e^-4	0.364	INTERGENIC
2L	6060215	2L_6060215_SNP [dm3] 2L_6060215_SNP [dm6]	C	T	1.131e^-4	0.364	UPSTREAM CG34180 DOWNSTREAM CG9140 & 1 other INTERGENIC
2R	15442504	2R_15442504_SNP [dm3] 2R_19554999_SNP [dm6]	C	G	1.132e^-4	0.364	INTRON sm
2L	12728637	2L_12728637_SNP [dm3] 2L_12728637_SNP [dm6]	T	A	1.133e^-4	0.364	NON_SYNONYMOUS_CODING MRP INTRON MRP
2L	5959381	2L_5959381_SNP [dm3] 2L_5959381_SNP [dm6]	T	A	1.135e^-4	0.364	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
X	17579625	X_17579625_SNP [dm3] X_17685592_SNP [dm6]	T	A	1.136e^-4	0.364	INTRON chas
2L	14322986	2L_14322986_SNP [dm3] 2L_14322986_SNP [dm6]	A	G	1.137e^-4	0.364	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	3794185	3L_3794185_SNP [dm3] 3L_3794185_SNP [dm6]	C	G	1.137e^-4	0.364	INTRON CG32264
2L	1331968	2L_1331968_SNP [dm3] 2L_1331968_SNP [dm6]	G	A	1.146e^-4	0.366	INTERGENIC
3R	21357765	3R_21357765_SNP [dm3] 3R_25532043_SNP [dm6]	T	A	1.151e^-4	0.366	INTRON msi	TF binding site mE1_TFBS_inv
2R	1630199	2R_1630199_SNP [dm3] 2R_5742694_SNP [dm6]	T	G	1.151e^-4	0.366	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	15601084	3R_15601084_SNP [dm3] 3R_19775362_SNP [dm6]	C	G	1.155e^-4	0.367	DOWNSTREAM CG11659 & 1 other INTERGENIC
3L	22877778	3L_22877778_SNP [dm3] 3L_22884678_SNP [dm6]	C	G	1.162e^-4	0.369	UPSTREAM slif INTRON slif	transposable element FlyBase
2L	6064752	2L_6064752_SNP [dm3] 2L_6064752_SNP [dm6]	G	A	1.164e^-4	0.369	NON_SYNONYMOUS_CODING Fbw5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17419220	3R_17419220_SNP [dm3] 3R_21593498_SNP [dm6]	A	G	1.167e^-4	0.369	INTRON InR & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	27197077	3R_27197077_SNP [dm3] 3R_31371355_SNP [dm6]	A	G	1.173e^-4	0.37	UTR_3_PRIME CG34347
2R	16056866	2R_16056866_SNP [dm3] 2R_20169361_SNP [dm6]	T	C	1.176e^-4	0.37	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2652931	2L_2652931_SNP [dm3] 2L_2652931_SNP [dm6]	T	A	1.176e^-4	0.37	UPSTREAM Prosbeta4R1 & 1 other INTERGENIC
3L	7749808	3L_7749808_SNP [dm3] 3L_7756708_SNP [dm6]	T	A	1.180e^-4	0.37	UTR_5_PRIME CG32373 INTRON CG32373
3L	10410693	3L_10410693_SNP [dm3] 3L_10417593_SNP [dm6]	G	A	1.186e^-4	0.37	INTERGENIC
3L	8689430	3L_8689430_DEL [dm3] 3L_8696330_DEL [dm6]	AA	A	1.187e^-4	0.37	INTERGENIC
2L	12723890	2L_12723890_SNP [dm3] 2L_12723890_SNP [dm6]	A	G	1.187e^-4	0.37	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	16730808	3R_16730808_SNP [dm3] 3R_20905086_SNP [dm6]	C	A	1.190e^-4	0.37	NON_SYNONYMOUS_CODING TotX INTRON CG5621
3R	16731493	3R_16731493_SNP [dm3] 3R_20905771_SNP [dm6]	G	T	1.190e^-4	0.37	UPSTREAM TotX INTRON CG5621
2L	12428135	2L_12428135_SNP [dm3] 2L_12428135_SNP [dm6]	G	C	1.195e^-4	0.37	SPLICE_SITE_REGION CG6388 UPSTREAM CG5446 INTRON CG6388	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8820398	3L_8820398_SNP [dm3] 3L_8827298_SNP [dm6]	C	T	1.198e^-4	0.37	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6375860	3R_6375860_SNP [dm3] 3R_10550138_SNP [dm6]	C	T	1.201e^-4	0.37	INTRON hth
2R	13977242	2R_13977242_SNP [dm3] 2R_18089737_SNP [dm6]	T	C	1.203e^-4	0.37	INTRON CG34386
X	18363178	X_18363178_SNP [dm3] X_18469145_SNP [dm6]	G	A	1.204e^-4	0.37	INTRON CG32547
2L	2357542	2L_2357542_SNP [dm3] 2L_2357542_SNP [dm6]	T	G	1.204e^-4	0.37	UPSTREAM CG9967 INTRON eys
3R	25316046	3R_25316046_SNP [dm3] 3R_29490324_SNP [dm6]	C	T	1.206e^-4	0.37	SYNONYMOUS_CODING CG2006 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	889157	3R_889157_SNP [dm3] 3R_5063435_SNP [dm6]	A	G	1.207e^-4	0.37	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4843017	2L_4843017_SNP [dm3] 2L_4843017_SNP [dm6]	C	G	1.211e^-4	0.37	UTR_3_PRIME mxt INTRON mxt
2R	2067133	2R_2067133_SNP [dm3] 2R_6179628_SNP [dm6]	A	T	1.212e^-4	0.37	UPSTREAM tRNA:R2:42Aa & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13960299	2R_13960299_SNP [dm3] 2R_18072794_SNP [dm6]	C	T	1.213e^-4	0.37	INTRON CG34386
2L	955148	2L_955148_SNP [dm3] 2L_955148_SNP [dm6]	C	G	1.214e^-4	0.37	INTRON CG4341
2R	11442094	2R_11442094_SNP [dm3] 2R_15554589_SNP [dm6]	C	A	1.219e^-4	0.37	UPSTREAM CG12963 INTERGENIC
3R	14667542	3R_14667542_DEL [dm3] 3R_18841820_DEL [dm6]	TT	T	1.219e^-4	0.37	INTRON CG18208
3L	18685844	3L_18685844_MNP [dm3] 3L_18692744_MNP [dm6]	AGGG	TTAC	1.222e^-4	0.37	DOWNSTREAM CR43987 INTERGENIC
2R	6057329	2R_6057329_SNP [dm3] 2R_10169824_SNP [dm6]	G	A	1.223e^-4	0.37	INTRON KCNQ
3R	17419583	3R_17419583_SNP [dm3] 3R_21593861_SNP [dm6]	T	C	1.228e^-4	0.37	INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3782523	3L_3782523_SNP [dm3] 3L_3782523_SNP [dm6]	A	G	1.232e^-4	0.37	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6973799	3L_6973799_SNP [dm3] 3L_6980699_SNP [dm6]	T	A	1.234e^-4	0.37	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	343092	2L_343092_SNP [dm3] 2L_343092_SNP [dm6]	C	T	1.235e^-4	0.37	SYNONYMOUS_CODING Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8440242	X_8440242_SNP [dm3] X_8546209_SNP [dm6]	G	T	1.237e^-4	0.37	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	27210000	3R_27210000_SNP [dm3] 3R_31384278_SNP [dm6]	T	C	1.237e^-4	0.37	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21125174	X_21125174_SNP [dm3] X_21254147_SNP [dm6]	A	C	1.238e^-4	0.37	INTRON CG32521
2L	1754649	2L_1754649_SNP [dm3] 2L_1754649_SNP [dm6]	C	A	1.239e^-4	0.37	DOWNSTREAM Gr22f INTERGENIC
3R	27255025	3R_27255025_SNP [dm3] 3R_31429303_SNP [dm6]	G	A	1.241e^-4	0.37	INTRON Gprk2
2L	345878	2L_345878_SNP [dm3] 2L_345878_SNP [dm6]	C	T	1.241e^-4	0.37	UTR_3_PRIME Plc21C
2L	2832521	2L_2832521_SNP [dm3] 2L_2832521_SNP [dm6]	G	A	1.247e^-4	0.37	INTERGENIC
3L	7632393	3L_7632393_SNP [dm3] 3L_7639293_SNP [dm6]	G	T	1.247e^-4	0.37	UTR_3_PRIME CG33275 UPSTREAM snoRNA:Me18S-A1806 DOWNSTREAM CG33276
3R	15470735	3R_15470735_SNP [dm3] 3R_19645013_SNP [dm6]	G	C	1.248e^-4	0.37	UPSTREAM Nup58 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1020246	2L_1020246_SNP [dm3] 2L_1020246_SNP [dm6]	T	A	1.252e^-4	0.37	INTRON IA-2
2L	1021309	2L_1021309_SNP [dm3] 2L_1021309_SNP [dm6]	C	G	1.252e^-4	0.37	INTRON IA-2
3R	17347686	3R_17347686_SNP [dm3] 3R_21521964_SNP [dm6]	C	T	1.252e^-4	0.37	INTRON CG7956	TF binding site BDTNP1_TFBS_dl
3R	16338044	3R_16338044_SNP [dm3] 3R_20512322_SNP [dm6]	A	T	1.252e^-4	0.37	INTRON CG4288	TF binding site BDTNP1_TFBS_sna
2L	2397324	2L_2397324_SNP [dm3] 2L_2397324_SNP [dm6]	T	C	1.256e^-4	0.37	INTRON VGlut
X	3563543	X_3563543_SNP [dm3] X_3669510_SNP [dm6]	T	A	1.259e^-4	0.37	SYNONYMOUS_CODING Parg DOWNSTREAM Ilp7
3L	7242553	3L_7242553_SNP [dm3] 3L_7249453_SNP [dm6]	A	T	1.265e^-4	0.37	UPSTREAM Cdc27 DOWNSTREAM MED4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D
3R	9707859	3R_9707859_SNP [dm3] 3R_13882137_SNP [dm6]	T	A	1.265e^-4	0.37	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27456148	3R_27456148_SNP [dm3] 3R_31630426_SNP [dm6]	G	A	1.265e^-4	0.37	INTRON kek6
3L	20314027	3L_20314027_SNP [dm3] 3L_20320927_SNP [dm6]	A	G	1.266e^-4	0.37	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	1.268e^-4	0.37	INTRON kirre
2L	13896571	2L_13896571_SNP [dm3] 2L_13896571_SNP [dm6]	C	T	1.274e^-4	0.371	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2066213	2R_2066213_SNP [dm3] 2R_6178708_SNP [dm6]	C	T	1.280e^-4	0.371	UPSTREAM tRNA:R2:42Aa INTERGENIC	regulatory region REDfly_CRMs
2L	4492584	2L_4492584_SNP [dm3] 2L_4492584_SNP [dm6]	C	T	1.281e^-4	0.371	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	542916	2R_542916_SNP [dm3] 2R_4655411_SNP [dm6]	T	A	1.282e^-4	0.371	INTERGENIC
2L	6041159	2L_6041159_SNP [dm3] 2L_6041159_SNP [dm6]	T	A	1.284e^-4	0.371	UTR_3_PRIME CG31643 DOWNSTREAM ade2
2R	16706130	2R_16706130_SNP [dm3] 2R_20818625_SNP [dm6]	A	G	1.285e^-4	0.371	INTERGENIC
2L	5959486	2L_5959486_SNP [dm3] 2L_5959486_SNP [dm6]	G	T	1.286e^-4	0.371	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	13494615	2L_13494615_SNP [dm3] 2L_13494615_SNP [dm6]	G	A	1.289e^-4	0.372	INTRON CG42784
X	12610759	X_12610759_SNP [dm3] X_12716726_SNP [dm6]	C	A	1.295e^-4	0.373	DOWNSTREAM CR43963 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14290978	3R_14290978_SNP [dm3] 3R_18465256_SNP [dm6]	C	A	1.297e^-4	0.373	INTRON fru
2L	14322980	2L_14322980_SNP [dm3] 2L_14322980_SNP [dm6]	T	C	1.299e^-4	0.373	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
X	17331533	X_17331533_SNP [dm3] X_17437500_SNP [dm6]	T	A	1.300e^-4	0.373	INTRON CG12994
3R	27437978	3R_27437978_SNP [dm3] 3R_31612256_SNP [dm6]	A	G	1.306e^-4	0.374	INTRON CycG & 1 other
2R	4357514	2R_4357514_SNP [dm3] 2R_8470009_SNP [dm6]	G	A	1.309e^-4	0.374	INTRON Mal-A7
2L	6327348	2L_6327348_SNP [dm3] 2L_6327348_SNP [dm6]	T	C	1.309e^-4	0.374	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13470304	2R_13470304_SNP [dm3] 2R_17582799_SNP [dm6]	T	G	1.317e^-4	0.374	SYNONYMOUS_CODING CG6484	TF binding site mE1_TFBS_chinmo
2R	10456245	2R_10456245_MNP [dm3] 2R_14568740_MNP [dm6]	AAT	TGG	1.319e^-4	0.374	INTRON ttv
X	4635152	X_4635152_SNP [dm3] X_4741119_SNP [dm6]	G	A	1.321e^-4	0.374	INTERGENIC
2L	6110701	2L_6110701_SNP [dm3] 2L_6110701_SNP [dm6]	G	A	1.321e^-4	0.374	INTRON stai
X	5869270	X_5869270_SNP [dm3] X_5975237_SNP [dm6]	G	C	1.324e^-4	0.374	INTRON Grip
2L	5959483	2L_5959483_SNP [dm3] 2L_5959483_SNP [dm6]	T	C	1.327e^-4	0.374	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	2085676	2L_2085676_SNP [dm3] 2L_2085676_SNP [dm6]	A	G	1.329e^-4	0.374	INTRON dpr3
3R	22449342	3R_22449342_SNP [dm3] 3R_26623620_SNP [dm6]	G	C	1.337e^-4	0.374	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	18106912	2R_18106912_SNP [dm3] 2R_22219407_SNP [dm6]	A	T	1.338e^-4	0.374	SYNONYMOUS_CODING Oatp58Da UPSTREAM CG30278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6044632	2L_6044632_SNP [dm3] 2L_6044632_SNP [dm6]	C	T	1.338e^-4	0.374	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	1.343e^-4	0.374	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13984182	2R_13984182_SNP [dm3] 2R_18096677_SNP [dm6]	A	G	1.346e^-4	0.374	SYNONYMOUS_CODING CG5098	TF binding site mE1_TFBS_chinmo
2R	2064421	2R_2064421_SNP [dm3] 2R_6176916_SNP [dm6]	C	A	1.346e^-4	0.374	DOWNSTREAM Cyp6w1 INTERGENIC	regulatory region REDfly_CRMs
2R	17650685	2R_17650685_SNP [dm3] 2R_21763180_SNP [dm6]	G	A	1.346e^-4	0.374	UPSTREAM CG43982 EXON CR43983
3L	15427601	3L_15427601_SNP [dm3] 3L_15434501_SNP [dm6]	C	A	1.348e^-4	0.374	INTERGENIC
3R	15116866	3R_15116866_SNP [dm3] 3R_19291144_SNP [dm6]	C	T	1.348e^-4	0.374	INTERGENIC
2R	17650689	2R_17650689_SNP [dm3] 2R_21763184_SNP [dm6]	A	G	1.349e^-4	0.374	UPSTREAM CG43982 EXON CR43983
2R	17650702	2R_17650702_SNP [dm3] 2R_21763197_SNP [dm6]	G	T	1.349e^-4	0.374	UPSTREAM CG43982 EXON CR43983
2L	6041133	2L_6041133_SNP [dm3] 2L_6041133_SNP [dm6]	T	C	1.350e^-4	0.374	UTR_3_PRIME CG31643 DOWNSTREAM ade2
2R	4526012	2R_4526012_SNP [dm3] 2R_8638507_SNP [dm6]	A	G	1.350e^-4	0.374	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2688675	2L_2688675_SNP [dm3] 2L_2688675_SNP [dm6]	C	A	1.352e^-4	0.374	INTRON CG31690
2L	6034807	2L_6034807_SNP [dm3] 2L_6034807_SNP [dm6]	T	C	1.354e^-4	0.374	UTR_3_PRIME mtm UPSTREAM CG9109	TF binding site mE1_TFBS_cad
2L	9224983	2L_9224983_SNP [dm3] 2L_9224983_SNP [dm6]	G	T	1.358e^-4	0.374	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr
2R	15377812	2R_15377812_SNP [dm3] 2R_19490307_SNP [dm6]	C	T	1.364e^-4	0.375	SYNONYMOUS_CODING Oseg6
2L	6312427	2L_6312427_SNP [dm3] 2L_6312427_SNP [dm6]	T	A	1.372e^-4	0.375	INTRON Ddr
2L	6312428	2L_6312428_SNP [dm3] 2L_6312428_SNP [dm6]	T	C	1.372e^-4	0.375	INTRON Ddr
3L	18935574	3L_18935574_SNP [dm3] 3L_18942474_SNP [dm6]	T	C	1.373e^-4	0.375	INTRON CG32204
2L	14263697	2L_14263697_SNP [dm3] 2L_14263697_SNP [dm6]	C	T	1.373e^-4	0.375	START_GAINED wb UTR_5_PRIME wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	15150828	2R_15150828_SNP [dm3] 2R_19263323_SNP [dm6]	G	T	1.377e^-4	0.375	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6312344	2L_6312344_SNP [dm3] 2L_6312344_SNP [dm6]	G	A	1.381e^-4	0.375	INTRON Ddr
3R	18689105	3R_18689105_SNP [dm3] 3R_22863383_SNP [dm6]	T	C	1.382e^-4	0.375	INTERGENIC
3R	10083237	3R_10083237_SNP [dm3] 3R_14257515_SNP [dm6]	T	A	1.385e^-4	0.375	DOWNSTREAM CG43179 INTRON Aats-met	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	14340753	2R_14340753_SNP [dm3] 2R_18453248_SNP [dm6]	A	G	1.385e^-4	0.375	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	20563563	3R_20563563_SNP [dm3] 3R_24737841_SNP [dm6]	T	C	1.387e^-4	0.375	INTRON tok
3L	11296913	3L_11296913_SNP [dm3] 3L_11303813_SNP [dm6]	A	T	1.388e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9593734	X_9593734_SNP [dm3] X_9699701_SNP [dm6]	A	G	1.391e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8165547	3L_8165547_SNP [dm3] 3L_8172447_SNP [dm6]	A	G	1.393e^-4	0.375	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
2L	6065775	2L_6065775_SNP [dm3] 2L_6065775_SNP [dm6]	G	A	1.397e^-4	0.375	UTR_5_PRIME Fbw5 UPSTREAM CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18983922	X_18983922_SNP [dm3] X_19089889_SNP [dm6]	A	T	1.402e^-4	0.375	INTERGENIC
3L	2638015	3L_2638015_SNP [dm3] 3L_2638015_SNP [dm6]	G	C	1.404e^-4	0.375	NON_SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8051718	2L_8051718_DEL [dm3] 2L_8051718_DEL [dm6]	TATATAATTA	T	1.404e^-4	0.375	INTRON CG7466
2L	15124100	2L_15124100_SNP [dm3] 2L_15124100_SNP [dm6]	G	C	1.404e^-4	0.375	INTERGENIC
X	16393286	X_16393286_SNP [dm3] X_16499253_SNP [dm6]	A	G	1.406e^-4	0.375	INTRON para
2R	17650708	2R_17650708_SNP [dm3] 2R_21763203_SNP [dm6]	C	T	1.407e^-4	0.375	UPSTREAM CG43982 EXON CR43983
3R	15589886	3R_15589886_SNP [dm3] 3R_19764164_SNP [dm6]	G	A	1.414e^-4	0.375	INTRON GluClalpha
3L	8163955	3L_8163955_SNP [dm3] 3L_8170855_SNP [dm6]	G	T	1.415e^-4	0.375	NON_SYNONYMOUS_CODING RecQ4
3L	20625577	3L_20625577_DEL [dm3] 3L_20632477_DEL [dm6]	TAACTTTTTATAAGAT...	T	1.415e^-4	0.375	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1111398	3L_1111398_SNP [dm3] 3L_1111398_SNP [dm6]	C	G	1.415e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1283359	2L_1283359_SNP [dm3] 2L_1283359_SNP [dm6]	T	A	1.417e^-4	0.375	INTRON robo3
2L	13460875	2L_13460875_SNP [dm3] 2L_13460875_SNP [dm6]	C	T	1.417e^-4	0.375	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784
2L	13466227	2L_13466227_SNP [dm3] 2L_13466227_SNP [dm6]	C	T	1.417e^-4	0.375	INTRON CG42784
2R	13150182	2R_13150182_SNP [dm3] 2R_17262677_SNP [dm6]	A	G	1.419e^-4	0.375	UTR_5_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12617892	3L_12617892_SNP [dm3] 3L_12624792_SNP [dm6]	T	C	1.422e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9979656	2R_9979656_SNP [dm3] 2R_14092151_SNP [dm6]	A	G	1.425e^-4	0.375	NON_SYNONYMOUS_CODING Prosap DOWNSTREAM CG42288
3L	7242614	3L_7242614_SNP [dm3] 3L_7249514_SNP [dm6]	A	C	1.426e^-4	0.375	UPSTREAM Cdc27 DOWNSTREAM MED4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13718084	2L_13718084_SNP [dm3] 2L_13718084_SNP [dm6]	G	A	1.428e^-4	0.375	UPSTREAM CG31814 INTERGENIC
2R	15150858	2R_15150858_SNP [dm3] 2R_19263353_SNP [dm6]	G	T	1.432e^-4	0.375	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	27444601	3R_27444601_SNP [dm3] 3R_31618879_SNP [dm6]	G	T	1.434e^-4	0.375	UPSTREAM pasha INTRON pasha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14810966	3R_14810966_SNP [dm3] 3R_18985244_SNP [dm6]	A	G	1.435e^-4	0.375	INTRON gukh
2R	4357856	2R_4357856_SNP [dm3] 2R_8470351_SNP [dm6]	A	G	1.437e^-4	0.375	SYNONYMOUS_CODING Mal-A7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7627931	3L_7627931_SNP [dm3] 3L_7634831_SNP [dm6]	G	A	1.439e^-4	0.375	INTRON CG33275	TF binding site mE1_TFBS_HSA
X	18890575	X_18890575_SNP [dm3] X_18996542_SNP [dm6]	G	T	1.440e^-4	0.375	INTRON CG43759
2R	16927186	2R_16927186_SNP [dm3] 2R_21039681_SNP [dm6]	T	C	1.440e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7916231	2L_7916231_SNP [dm3] 2L_7916231_SNP [dm6]	C	T	1.444e^-4	0.375	INTRON Snoo
2L	7400177	2L_7400177_SNP [dm3] 2L_7400177_SNP [dm6]	G	A	1.445e^-4	0.375	DOWNSTREAM CR44079 INTERGENIC
2L	1102011	2L_1102011_SNP [dm3] 2L_1102011_SNP [dm6]	G	A	1.447e^-4	0.375	INTRON CG4629
2L	9950190	2L_9950190_SNP [dm3] 2L_9950190_SNP [dm6]	G	A	1.450e^-4	0.375	DOWNSTREAM mir-87 INTERGENIC
2R	2063393	2R_2063393_SNP [dm3] 2R_6175888_SNP [dm6]	A	C	1.450e^-4	0.375	UTR_3_PRIME Cyp6w1 DOWNSTREAM Cyp6w1	regulatory region REDfly_CRMs
3R	9299562	3R_9299562_SNP [dm3] 3R_13473840_SNP [dm6]	G	A	1.452e^-4	0.375	INTERGENIC
2L	6041743	2L_6041743_SNP [dm3] 2L_6041743_SNP [dm6]	C	G	1.453e^-4	0.375	SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12035078	3L_12035078_SNP [dm3] 3L_12041978_SNP [dm6]	T	C	1.460e^-4	0.376	UPSTREAM CG6793 INTRON rols
3L	3339580	3L_3339580_SNP [dm3] 3L_3339580_SNP [dm6]	T	A	1.477e^-4	0.379	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	1524263	2L_1524263_SNP [dm3] 2L_1524263_SNP [dm6]	T	C	1.479e^-4	0.379	DOWNSTREAM Or22b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15116874	3R_15116874_SNP [dm3] 3R_19291152_SNP [dm6]	C	G	1.479e^-4	0.379	INTERGENIC
2L	12727225	2L_12727225_SNP [dm3] 2L_12727225_SNP [dm6]	T	G	1.482e^-4	0.379	INTRON MRP
3R	9699484	3R_9699484_SNP [dm3] 3R_13873762_SNP [dm6]	C	G	1.482e^-4	0.379	NON_SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25356399	3R_25356399_SNP [dm3] 3R_29530677_SNP [dm6]	T	C	1.485e^-4	0.379	INTERGENIC
2L	7700611	2L_7700611_SNP [dm3] 2L_7700611_SNP [dm6]	G	T	1.490e^-4	0.379	SYNONYMOUS_CODING Tep2
2R	9214927	2R_9214927_SNP [dm3] 2R_13327422_SNP [dm6]	C	T	1.491e^-4	0.379	INTERGENIC
2R	9921443	2R_9921443_INS [dm3] 2R_14033938_INS [dm6]	A	AT	1.491e^-4	0.379	INTRON mam
3L	12605689	3L_12605689_SNP [dm3] 3L_12612589_SNP [dm6]	C	G	1.493e^-4	0.379	INTRON caup
3R	885146	3R_885146_SNP [dm3] 3R_5059424_SNP [dm6]	G	T	1.503e^-4	0.379	INTERGENIC
3R	27442116	3R_27442116_SNP [dm3] 3R_31616394_SNP [dm6]	G	A	1.504e^-4	0.379	UTR_5_PRIME CG1792 UPSTREAM CG11539	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3344358	3L_3344358_SNP [dm3] 3L_3344358_SNP [dm6]	A	T	1.504e^-4	0.379	INTRON kst
2L	3998061	2L_3998061_SNP [dm3] 2L_3998061_SNP [dm6]	G	C	1.506e^-4	0.379	INTERGENIC
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	1.506e^-4	0.379	INTRON Sox15	regulatory region REDfly_CRMs
2L	1514228	2L_1514228_SNP [dm3] 2L_1514228_SNP [dm6]	C	T	1.507e^-4	0.379	INTERGENIC
2L	2085691	2L_2085691_SNP [dm3] 2L_2085691_SNP [dm6]	A	T	1.508e^-4	0.379	INTRON dpr3
2R	9151882	2R_9151882_SNP [dm3] 2R_13264377_SNP [dm6]	T	A	1.516e^-4	0.38	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	1111385	3L_1111385_SNP [dm3] 3L_1111385_SNP [dm6]	A	C	1.516e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6595477	3L_6595477_SNP [dm3] 3L_6602377_SNP [dm6]	G	A	1.519e^-4	0.38	SYNONYMOUS_CODING ndl
2L	2085723	2L_2085723_SNP [dm3] 2L_2085723_SNP [dm6]	G	A	1.519e^-4	0.38	INTRON dpr3
2L	2085594	2L_2085594_SNP [dm3] 2L_2085594_SNP [dm6]	A	T	1.521e^-4	0.38	INTRON dpr3
2L	14627113	2L_14627113_SNP [dm3] 2L_14627113_SNP [dm6]	T	C	1.529e^-4	0.381	INTRON osp	TF binding site BDTNP1_TFBS_dl
2R	8860684	2R_8860684_INS [dm3] 2R_12973179_INS [dm6]	G	GCAGAAGG	1.529e^-4	0.381	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6041581	2L_6041581_SNP [dm3] 2L_6041581_SNP [dm6]	C	T	1.533e^-4	0.381	SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10910481	3R_10910481_SNP [dm3] 3R_15084759_SNP [dm6]	T	G	1.534e^-4	0.381	INTRON CG6966
X	18888878	X_18888878_SNP [dm3] X_18994845_SNP [dm6]	C	T	1.541e^-4	0.382	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2L	7206009	2L_7206009_SNP [dm3] 2L_7206009_SNP [dm6]	C	A	1.547e^-4	0.382	UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	14239704	2L_14239704_INS [dm3] 2L_14239704_INS [dm6]	A	AT	1.550e^-4	0.382	INTERGENIC
3L	13826171	3L_13826171_SNP [dm3] 3L_13833071_SNP [dm6]	T	G	1.551e^-4	0.382	INTERGENIC
3L	6290659	3L_6290659_DEL [dm3] 3L_6297559_DEL [dm6]	CTCACCAGC	C	1.554e^-4	0.382	INTERGENIC
2L	12554476	2L_12554476_SNP [dm3] 2L_12554476_SNP [dm6]	T	C	1.557e^-4	0.382	INTERGENIC
2R	15150860	2R_15150860_SNP [dm3] 2R_19263355_SNP [dm6]	G	A	1.557e^-4	0.382	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2621809	3L_2621809_SNP [dm3] 3L_2621809_SNP [dm6]	T	A	1.557e^-4	0.382	INTRON Pxn
2R	14270369	2R_14270369_SNP [dm3] 2R_18382864_SNP [dm6]	G	A	1.559e^-4	0.382	SYNONYMOUS_CODING IM23
3L	7244655	3L_7244655_SNP [dm3] 3L_7251555_SNP [dm6]	C	T	1.563e^-4	0.382	SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	10001103	X_10001103_SNP [dm3] X_10107070_SNP [dm6]	A	T	1.563e^-4	0.382	INTRON RhoU
2R	4390232	2R_4390232_SNP [dm3] 2R_8502727_SNP [dm6]	C	T	1.566e^-4	0.382	INTRON mtt
X	12326112	X_12326112_SNP [dm3] X_12432079_SNP [dm6]	C	A	1.571e^-4	0.382	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	20625641	3L_20625641_SNP [dm3] 3L_20632541_SNP [dm6]	A	C	1.572e^-4	0.382	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7700608	2L_7700608_SNP [dm3] 2L_7700608_SNP [dm6]	G	A	1.576e^-4	0.382	SYNONYMOUS_CODING Tep2
X	12848663	X_12848663_SNP [dm3] X_12954630_SNP [dm6]	A	G	1.576e^-4	0.382	INTRON hec
2R	13661565	2R_13661565_SNP [dm3] 2R_17774060_SNP [dm6]	T	C	1.577e^-4	0.382	UTR_3_PRIME fab1 & 1 other	TF binding site mE1_TFBS_sens
2R	14036307	2R_14036307_SNP [dm3] 2R_18148802_SNP [dm6]	C	A	1.578e^-4	0.382	UTR_3_PRIME CG5742 UPSTREAM CG17680
3R	25918512	3R_25918512_INS [dm3] 3R_30092790_INS [dm6]	C	CGG	1.578e^-4	0.382	INTRON sima
3L	21351917	3L_21351917_SNP [dm3] 3L_21358817_SNP [dm6]	A	T	1.580e^-4	0.382	NON_SYNONYMOUS_CODING CG32437	TF binding site mE1_TFBS_sens
2R	1632209	2R_1632209_DEL [dm3] 2R_5744704_DEL [dm6]	ACGCCC	TT	1.582e^-4	0.382	INTERGENIC	regulatory region REDfly_CRMs
3R	25918560	3R_25918560_SNP [dm3] 3R_30092838_SNP [dm6]	T	A	1.585e^-4	0.382	INTRON sima
2R	13955665	2R_13955665_SNP [dm3] 2R_18068160_SNP [dm6]	G	T	1.587e^-4	0.382	INTRON CG34386
2R	9088397	2R_9088397_SNP [dm3] 2R_13200892_SNP [dm6]	G	T	1.591e^-4	0.382	NON_SYNONYMOUS_CODING Aats-val INTRON Aats-val	TF binding site mE1_TFBS_cad
2L	2414356	2L_2414356_SNP [dm3] 2L_2414356_SNP [dm6]	G	A	1.591e^-4	0.382	INTRON CG18641
2L	2085674	2L_2085674_SNP [dm3] 2L_2085674_SNP [dm6]	C	A	1.591e^-4	0.382	INTRON dpr3
2L	2085679	2L_2085679_SNP [dm3] 2L_2085679_SNP [dm6]	G	T	1.591e^-4	0.382	INTRON dpr3
3L	12413142	3L_12413142_SNP [dm3] 3L_12420042_SNP [dm6]	A	T	1.596e^-4	0.383	INTERGENIC
2L	13725704	2L_13725704_INS [dm3] 2L_13725704_INS [dm6]	G	TTAAATTTAA	1.598e^-4	0.383	INTERGENIC
X	12610529	X_12610529_SNP [dm3] X_12716496_SNP [dm6]	T	A	1.602e^-4	0.383	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17315674	3R_17315674_SNP [dm3] 3R_21489952_SNP [dm6]	T	C	1.605e^-4	0.383	INTERGENIC
2L	2076845	2L_2076845_SNP [dm3] 2L_2076845_SNP [dm6]	C	A	1.607e^-4	0.383	INTRON dpr3
X	12610660	X_12610660_SNP [dm3] X_12716627_SNP [dm6]	T	G	1.608e^-4	0.383	DOWNSTREAM CR43963 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1033544	2L_1033544_SNP [dm3] 2L_1033544_SNP [dm6]	G	A	1.608e^-4	0.383	INTRON IA-2
3R	26369890	3R_26369890_SNP [dm3] 3R_30544168_SNP [dm6]	T	C	1.611e^-4	0.383	INTRON tmod
3R	15600995	3R_15600995_SNP [dm3] 3R_19775273_SNP [dm6]	G	A	1.614e^-4	0.383	DOWNSTREAM CG11659 & 1 other INTERGENIC
3R	27209688	3R_27209688_SNP [dm3] 3R_31383966_SNP [dm6]	T	A	1.615e^-4	0.383	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3L	12330577	3L_12330577_SNP [dm3] 3L_12337477_SNP [dm6]	T	A	1.619e^-4	0.383	DOWNSTREAM CG10418 EXON CR45444	TF binding site mE1_TFBS_cad
2R	11390710	2R_11390710_SNP [dm3] 2R_15503205_SNP [dm6]	A	C	1.620e^-4	0.383	NON_SYNONYMOUS_CODING Ir52b UPSTREAM Ir52c
X	18983994	X_18983994_SNP [dm3] X_19089961_SNP [dm6]	T	C	1.621e^-4	0.383	INTERGENIC
2L	2058440	2L_2058440_SNP [dm3] 2L_2058440_SNP [dm6]	A	T	1.625e^-4	0.383	DOWNSTREAM dpr3 & 1 other INTERGENIC
2L	2058446	2L_2058446_SNP [dm3] 2L_2058446_SNP [dm6]	T	C	1.625e^-4	0.383	DOWNSTREAM dpr3 & 1 other INTERGENIC
3R	27437024	3R_27437024_SNP [dm3] 3R_31611302_SNP [dm6]	A	T	1.628e^-4	0.383	UTR_5_PRIME Med UPSTREAM CycG INTRON CycG	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4692377	3R_4692377_SNP [dm3] 3R_8866655_SNP [dm6]	C	T	1.632e^-4	0.383	INTRON pyd
2R	15150846	2R_15150846_SNP [dm3] 2R_19263341_SNP [dm6]	T	C	1.638e^-4	0.384	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	2970234	2R_2970234_SNP [dm3] 2R_7082729_SNP [dm6]	A	T	1.642e^-4	0.385	INTERGENIC
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	1.652e^-4	0.387	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2322039	2L_2322039_DEL [dm3] 2L_2322039_DEL [dm6]	ACGAATA	A	1.654e^-4	0.387	INTRON CG9967 & 1 other
2R	9086484	2R_9086484_SNP [dm3] 2R_13198979_SNP [dm6]	A	C	1.660e^-4	0.387	UTR_5_PRIME Aats-val UPSTREAM Kdm4B	TF binding site mE1_TFBS_cad
3R	14655839	3R_14655839_DEL [dm3] 3R_18830117_DEL [dm6]	TAGTAAACAGCTGAAGTTTA...	T	1.663e^-4	0.387	INTRON CG18208
2R	18106991	2R_18106991_SNP [dm3] 2R_22219486_SNP [dm6]	G	C	1.663e^-4	0.387	NON_SYNONYMOUS_CODING Oatp58Da UPSTREAM CG30278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7234312	2R_7234312_SNP [dm3] 2R_11346807_SNP [dm6]	G	C	1.673e^-4	0.389	NON_SYNONYMOUS_CODING betaTry UPSTREAM epsilonTry	TF binding site mE1_TFBS_cad
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	1.674e^-4	0.389	INTRON sty
3L	18363506	3L_18363506_DEL [dm3] 3L_18370406_DEL [dm6]	TG	T	1.675e^-4	0.389	INTERGENIC
2L	7440781	2L_7440781_SNP [dm3] 2L_7440781_SNP [dm6]	C	G	1.680e^-4	0.389	UPSTREAM CG5973 INTRON CG5973
3R	17876358	3R_17876358_SNP [dm3] 3R_22050636_SNP [dm6]	T	C	1.685e^-4	0.39	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6033641	2L_6033641_SNP [dm3] 2L_6033641_SNP [dm6]	T	C	1.692e^-4	0.391	INTRON CG9109	TF binding site mE1_TFBS_cad
3R	16724037	3R_16724037_DEL [dm3] 3R_20898315_DEL [dm6]	AA	A	1.696e^-4	0.391	UPSTREAM CG10830 INTERGENIC
2L	6331034	2L_6331034_MNP [dm3] 2L_6331034_MNP [dm6]	TTC	CCT	1.698e^-4	0.391	INTRON PDZ-GEF
2L	13725733	2L_13725733_SNP [dm3] 2L_13725733_SNP [dm6]	A	G	1.703e^-4	0.391	INTERGENIC
3R	15407685	3R_15407685_SNP [dm3] 3R_19581963_SNP [dm6]	C	A	1.703e^-4	0.391	INTRON Dys
2L	1658329	2L_1658329_SNP [dm3] 2L_1658329_SNP [dm6]	G	T	1.703e^-4	0.391	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	12326235	X_12326235_SNP [dm3] X_12432202_SNP [dm6]	G	A	1.705e^-4	0.391	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_Trl
3R	23843007	3R_23843007_SNP [dm3] 3R_28017285_SNP [dm6]	C	A	1.713e^-4	0.392	INTERGENIC
2L	4418366	2L_4418366_SNP [dm3] 2L_4418366_SNP [dm6]	C	G	1.713e^-4	0.392	DOWNSTREAM tRNA:CR31963 INTRON CG15431
3R	16075708	3R_16075708_SNP [dm3] 3R_20249986_SNP [dm6]	G	T	1.716e^-4	0.392	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1287825	2L_1287825_SNP [dm3] 2L_1287825_SNP [dm6]	T	A	1.717e^-4	0.392	INTRON robo3
2L	4323813	2L_4323813_SNP [dm3] 2L_4323813_SNP [dm6]	T	G	1.718e^-4	0.392	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC
2R	15813564	2R_15813564_DEL [dm3] 2R_19926059_DEL [dm6]	TTAAAAGCTAGCTTAGCTCA...	T	1.719e^-4	0.392	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	14584450	X_14584450_SNP [dm3] X_14690417_SNP [dm6]	T	G	1.723e^-4	0.392	UTR_3_PRIME NetB
X	18891218	X_18891218_SNP [dm3] X_18997185_SNP [dm6]	C	T	1.729e^-4	0.392	INTRON CG43759
2L	12490318	2L_12490318_SNP [dm3] 2L_12490318_SNP [dm6]	G	A	1.731e^-4	0.392	INTRON bun
2L	12490319	2L_12490319_SNP [dm3] 2L_12490319_SNP [dm6]	T	C	1.731e^-4	0.392	INTRON bun
3L	15187558	3L_15187558_SNP [dm3] 3L_15194458_SNP [dm6]	A	G	1.732e^-4	0.392	INTERGENIC
3R	15215976	3R_15215976_SNP [dm3] 3R_19390254_SNP [dm6]	A	G	1.734e^-4	0.392	UPSTREAM CG18493 DOWNSTREAM CG3734 INTRON Ino80
3L	4578969	3L_4578969_SNP [dm3] 3L_4578969_SNP [dm6]	T	C	1.737e^-4	0.392	INTRON CG42540
2R	16501436	2R_16501436_DEL [dm3] 2R_20613931_DEL [dm6]	TTTGCAGTGC	T	1.737e^-4	0.392	INTRON Hil	TF binding site BDTNP1_TFBS_dl
2L	7410976	2L_7410976_SNP [dm3] 2L_7410976_SNP [dm6]	A	G	1.738e^-4	0.392	NON_SYNONYMOUS_CODING CG15818	TF binding site mE1_TFBS_ttk
2L	7447943	2L_7447943_SNP [dm3] 2L_7447943_SNP [dm6]	A	C	1.740e^-4	0.392	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
3L	5546635	3L_5546635_SNP [dm3] 3L_5553535_SNP [dm6]	A	T	1.745e^-4	0.392	INTERGENIC
2R	13982744	2R_13982744_SNP [dm3] 2R_18095239_SNP [dm6]	C	T	1.747e^-4	0.392	UPSTREAM CG5098 & 1 other INTRON CG5098	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	9132573	X_9132573_SNP [dm3] X_9238540_SNP [dm6]	C	T	1.753e^-4	0.393	SYNONYMOUS_CODING mxc
3R	6465892	3R_6465892_SNP [dm3] 3R_10640170_SNP [dm6]	C	T	1.756e^-4	0.393	UPSTREAM hth EXON CR44018	TF binding site BDTNP1_TFBS_twi
3L	17732462	3L_17732462_SNP [dm3] 3L_17739362_SNP [dm6]	G	A	1.756e^-4	0.393	INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19872480	X_19872480_SNP [dm3] X_19978447_SNP [dm6]	A	T	1.757e^-4	0.393	INTERGENIC
3R	22466754	3R_22466754_SNP [dm3] 3R_26641032_SNP [dm6]	G	C	1.764e^-4	0.394	UTR_3_PRIME TwdlD
3R	14293234	3R_14293234_SNP [dm3] 3R_18467512_SNP [dm6]	A	G	1.769e^-4	0.394	INTRON fru
2L	960008	2L_960008_SNP [dm3] 2L_960008_SNP [dm6]	A	G	1.776e^-4	0.395	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8243754	2R_8243754_SNP [dm3] 2R_12356249_SNP [dm6]	G	A	1.781e^-4	0.396	NON_SYNONYMOUS_CODING CG30049 DOWNSTREAM CG30047	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17876359	3R_17876359_SNP [dm3] 3R_22050637_SNP [dm6]	T	C	1.786e^-4	0.397	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10572819	2L_10572819_SNP [dm3] 2L_10572819_SNP [dm6]	T	A	1.791e^-4	0.397	INTRON Trim9
2L	2076113	2L_2076113_SNP [dm3] 2L_2076113_SNP [dm6]	T	C	1.797e^-4	0.398	INTRON dpr3
2R	16659596	2R_16659596_SNP [dm3] 2R_20772091_SNP [dm6]	C	T	1.805e^-4	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20302921	2R_20302921_SNP [dm3] 2R_24415398_SNP [dm6]	A	T	1.807e^-4	0.399	DOWNSTREAM prom & 2 others INTERGENIC
2R	9972901	2R_9972901_SNP [dm3] 2R_14085396_SNP [dm6]	G	A	1.807e^-4	0.399	INTRON Prosap
3R	15599434	3R_15599434_SNP [dm3] 3R_19773712_SNP [dm6]	G	A	1.814e^-4	0.399	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
3R	21510309	3R_21510309_SNP [dm3] 3R_25684587_SNP [dm6]	C	A	1.814e^-4	0.399	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	20056494	2L_20056494_SNP [dm3] 2L_20056494_SNP [dm6]	T	C	1.814e^-4	0.399	DOWNSTREAM sNPF INTERGENIC
3R	27209984	3R_27209984_SNP [dm3] 3R_31384262_SNP [dm6]	A	G	1.817e^-4	0.399	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13152475	2R_13152475_SNP [dm3] 2R_17264970_SNP [dm6]	G	C	1.823e^-4	0.399	UPSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	1760833	2L_1760833_SNP [dm3] 2L_1760833_SNP [dm6]	G	C	1.825e^-4	0.399	INTERGENIC
3L	7242622	3L_7242622_SNP [dm3] 3L_7249522_SNP [dm6]	C	T	1.829e^-4	0.399	UPSTREAM Cdc27 DOWNSTREAM MED4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7380668	2R_7380668_SNP [dm3] 2R_11493163_SNP [dm6]	T	G	1.831e^-4	0.399	INTRON inv
2R	18954619	2R_18954619_INS [dm3] 2R_23067096_INS [dm6]	T	TATACCAGTCCAATGTCCAA...	1.832e^-4	0.399	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22449549	3R_22449549_SNP [dm3] 3R_26623827_SNP [dm6]	G	T	1.835e^-4	0.399	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
3R	16091635	3R_16091635_SNP [dm3] 3R_20265913_SNP [dm6]	T	G	1.835e^-4	0.399	INTRON cic
2R	1632081	2R_1632081_SNP [dm3] 2R_5744576_SNP [dm6]	T	C	1.837e^-4	0.399	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	23951874	3L_23951874_SNP [dm3] 3L_23958774_SNP [dm6]	A	T	1.841e^-4	0.399	INTRON CG40470
3R	8555868	3R_8555868_SNP [dm3] 3R_12730146_SNP [dm6]	T	C	1.841e^-4	0.399	INTERGENIC
2R	9210041	2R_9210041_SNP [dm3] 2R_13322536_SNP [dm6]	A	T	1.844e^-4	0.399	INTERGENIC
2L	6021663	2L_6021663_SNP [dm3] 2L_6021663_SNP [dm6]	T	C	1.846e^-4	0.399	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7384360	2R_7384360_SNP [dm3] 2R_11496855_SNP [dm6]	T	G	1.851e^-4	0.399	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7384361	2R_7384361_SNP [dm3] 2R_11496856_SNP [dm6]	T	C	1.851e^-4	0.399	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	955578	2L_955578_SNP [dm3] 2L_955578_SNP [dm6]	A	T	1.855e^-4	0.399	INTRON CG4341
X	11083847	X_11083847_SNP [dm3] X_11189814_SNP [dm6]	G	C	1.857e^-4	0.399	INTERGENIC
2R	16848688	2R_16848688_SNP [dm3] 2R_20961183_SNP [dm6]	G	A	1.857e^-4	0.399	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14261969	2L_14261969_SNP [dm3] 2L_14261969_SNP [dm6]	A	G	1.861e^-4	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	13358276	2L_13358276_SNP [dm3] 2L_13358276_SNP [dm6]	G	C	1.863e^-4	0.399	INTERGENIC
3L	15279998	3L_15279998_SNP [dm3] 3L_15286898_SNP [dm6]	G	A	1.864e^-4	0.399	INTERGENIC
X	10023988	X_10023988_SNP [dm3] X_10129955_SNP [dm6]	C	T	1.864e^-4	0.399	INTRON CR44894 & 1 other
2L	20056455	2L_20056455_SNP [dm3] 2L_20056455_SNP [dm6]	A	T	1.869e^-4	0.399	DOWNSTREAM sNPF INTERGENIC
2R	16501559	2R_16501559_SNP [dm3] 2R_20614054_SNP [dm6]	A	G	1.871e^-4	0.399	INTRON Hil	TF binding site BDTNP1_TFBS_dl
2R	5871653	2R_5871653_SNP [dm3] 2R_9984148_SNP [dm6]	C	T	1.871e^-4	0.399	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6043036	2L_6043036_SNP [dm3] 2L_6043036_SNP [dm6]	T	C	1.872e^-4	0.399	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8249648	3L_8249648_SNP [dm3] 3L_8256548_SNP [dm6]	C	G	1.875e^-4	0.399	INTRON Dscam4
2R	2490073	2R_2490073_SNP [dm3] 2R_6602568_SNP [dm6]	G	C	1.877e^-4	0.399	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	2491018	2R_2491018_SNP [dm3] 2R_6603513_SNP [dm6]	C	A	1.877e^-4	0.399	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14228022	2L_14228022_SNP [dm3] 2L_14228022_SNP [dm6]	A	C	1.880e^-4	0.399	INTRON Dyrk2
X	2838737	X_2838737_SNP [dm3] X_2944704_SNP [dm6]	C	T	1.880e^-4	0.399	UPSTREAM CG14423 DOWNSTREAM CG14422 INTRON kirre
2R	6773921	2R_6773921_SNP [dm3] 2R_10886416_SNP [dm6]	C	T	1.884e^-4	0.4	UPSTREAM CG30020 DOWNSTREAM mir-1008 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8507831	3R_8507831_SNP [dm3] 3R_12682109_SNP [dm6]	T	C	1.890e^-4	0.4	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
3R	14461470	3R_14461470_DEL [dm3] 3R_18635748_DEL [dm6]	TC	T	1.891e^-4	0.4	INTRON qin & 1 other
3L	7243076	3L_7243076_SNP [dm3] 3L_7249976_SNP [dm6]	G	A	1.893e^-4	0.4	SYNONYMOUS_CODING MED4 UPSTREAM Cdc27 & 1 other DOWNSTREAM CG14830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	10144116	2L_10144116_SNP [dm3] 2L_10144116_SNP [dm6]	C	T	1.895e^-4	0.4	UPSTREAM CG4839 INTRON CG44153
3R	9189303	3R_9189303_SNP [dm3] 3R_13363581_SNP [dm6]	C	T	1.897e^-4	0.4	INTRON poly
3L	3771968	3L_3771968_SNP [dm3] 3L_3771968_SNP [dm6]	G	T	1.901e^-4	0.4	INTRON CG32264
2R	15155889	2R_15155889_SNP [dm3] 2R_19268384_SNP [dm6]	A	G	1.902e^-4	0.4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17410265	2R_17410265_SNP [dm3] 2R_21522760_SNP [dm6]	C	A	1.916e^-4	0.402	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	16595943	X_16595943_SNP [dm3] X_16701910_SNP [dm6]	T	A	1.917e^-4	0.402	UTR_5_PRIME spheroide DOWNSTREAM CG9673 INTRON CG4678
3R	22195183	3R_22195183_SNP [dm3] 3R_26369461_SNP [dm6]	A	T	1.919e^-4	0.402	INTERGENIC
X	2932554	X_2932554_SNP [dm3] X_3038521_SNP [dm6]	T	C	1.922e^-4	0.402	INTRON kirre
3L	4669341	3L_4669341_SNP [dm3] 3L_4669341_SNP [dm6]	C	T	1.927e^-4	0.402	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18935559	3L_18935559_SNP [dm3] 3L_18942459_SNP [dm6]	C	T	1.932e^-4	0.402	INTRON CG32204
3R	26389945	3R_26389945_SNP [dm3] 3R_30564223_SNP [dm6]	A	G	1.934e^-4	0.402	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4169542	2L_4169542_SNP [dm3] 2L_4169542_SNP [dm6]	C	G	1.935e^-4	0.402	INTERGENIC
2L	6037362	2L_6037362_SNP [dm3] 2L_6037362_SNP [dm6]	A	T	1.935e^-4	0.402	NON_SYNONYMOUS_CODING CG9117 UPSTREAM mtm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	22462472	3R_22462472_SNP [dm3] 3R_26636750_SNP [dm6]	G	C	1.939e^-4	0.402	NON_SYNONYMOUS_CODING TwdlS DOWNSTREAM TwdlR
3R	21226991	3R_21226991_SNP [dm3] 3R_25401269_SNP [dm6]	G	T	1.942e^-4	0.402	UPSTREAM Muc96D INTRON Fur1
2L	6312258	2L_6312258_INS [dm3] 2L_6312258_INS [dm6]	TTA	AGGG	1.943e^-4	0.402	INTRON Ddr
2L	4384957	2L_4384957_SNP [dm3] 2L_4384957_SNP [dm6]	G	A	1.945e^-4	0.402	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10576500	2L_10576500_SNP [dm3] 2L_10576500_SNP [dm6]	G	A	1.946e^-4	0.402	SYNONYMOUS_CODING w-cup INTRON Trim9
2L	12441058	2L_12441058_SNP [dm3] 2L_12441058_SNP [dm6]	G	C	1.948e^-4	0.402	UTR_3_PRIME Elf DOWNSTREAM Oatp33Ea & 1 other
2L	14282365	2L_14282365_SNP [dm3] 2L_14282365_SNP [dm6]	C	T	1.949e^-4	0.402	INTRON wb
2R	15150797	2R_15150797_SNP [dm3] 2R_19263292_SNP [dm6]	T	A	1.950e^-4	0.402	DOWNSTREAM CG7229 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15150801	2R_15150801_SNP [dm3] 2R_19263296_SNP [dm6]	G	A	1.950e^-4	0.402	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23929380	3R_23929380_SNP [dm3] 3R_28103658_SNP [dm6]	A	G	1.955e^-4	0.402	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2442328	X_2442328_SNP [dm3] X_2548295_SNP [dm6]	T	A	1.964e^-4	0.402	INTERGENIC
2L	14259064	2L_14259064_SNP [dm3] 2L_14259064_SNP [dm6]	T	G	1.973e^-4	0.402	INTERGENIC
2L	14259066	2L_14259066_SNP [dm3] 2L_14259066_SNP [dm6]	T	A	1.973e^-4	0.402	INTERGENIC
2R	16501662	2R_16501662_SNP [dm3] 2R_20614157_SNP [dm6]	A	T	1.974e^-4	0.402	INTRON Hil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9189254	3R_9189254_SNP [dm3] 3R_13363532_SNP [dm6]	T	G	1.977e^-4	0.402	INTRON poly
3R	9189286	3R_9189286_SNP [dm3] 3R_13363564_SNP [dm6]	A	T	1.977e^-4	0.402	INTRON poly
3R	9189288	3R_9189288_SNP [dm3] 3R_13363566_SNP [dm6]	T	A	1.977e^-4	0.402	INTRON poly
3R	14291032	3R_14291032_INS [dm3] 3R_18465310_INS [dm6]	A	AC	1.978e^-4	0.402	INTRON fru
2R	14445732	2R_14445732_SNP [dm3] 2R_18558227_SNP [dm6]	T	A	1.979e^-4	0.402	SPLICE_SITE_REGION GEFmeso INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14361773	3L_14361773_INS [dm3] 3L_14368673_INS [dm6]	C	CTGGGAAA	1.982e^-4	0.402	DOWNSTREAM CG13481 & 1 other INTERGENIC
3R	9702636	3R_9702636_SNP [dm3] 3R_13876914_SNP [dm6]	C	G	1.984e^-4	0.402	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21510268	3R_21510268_SNP [dm3] 3R_25684546_SNP [dm6]	A	T	1.986e^-4	0.402	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	12092237	3L_12092237_SNP [dm3] 3L_12099137_SNP [dm6]	A	T	1.988e^-4	0.402	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15150822	2R_15150822_SNP [dm3] 2R_19263317_SNP [dm6]	C	G	1.989e^-4	0.402	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	2482934	2R_2482934_SNP [dm3] 2R_6595429_SNP [dm6]	C	A	1.996e^-4	0.402	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	1534262	2L_1534262_SNP [dm3] 2L_1534262_SNP [dm6]	A	C	1.996e^-4	0.402	INTERGENIC
2R	15150795	2R_15150795_SNP [dm3] 2R_19263290_SNP [dm6]	A	C	1.997e^-4	0.402	DOWNSTREAM CG7229 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6033672	2L_6033672_SNP [dm3] 2L_6033672_SNP [dm6]	A	G	1.997e^-4	0.402	INTRON CG9109	TF binding site mE1_TFBS_cad
2R	17761830	2R_17761830_SNP [dm3] 2R_21874325_SNP [dm6]	A	T	1.999e^-4	0.402	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27209842	3R_27209842_SNP [dm3] 3R_31384120_SNP [dm6]	C	T	2.000e^-4	0.402	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3L	8168089	3L_8168089_SNP [dm3] 3L_8174989_SNP [dm6]	T	C	2.001e^-4	0.402	NON_SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_sens
3R	16337942	3R_16337942_SNP [dm3] 3R_20512220_SNP [dm6]	G	C	2.002e^-4	0.402	INTRON CG4288
2L	12287837	2L_12287837_SNP [dm3] 2L_12287837_SNP [dm6]	A	T	2.003e^-4	0.402	INTRON aret
2R	1632072	2R_1632072_SNP [dm3] 2R_5744567_SNP [dm6]	G	T	2.003e^-4	0.402	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3R	16718241	3R_16718241_SNP [dm3] 3R_20892519_SNP [dm6]	C	A	2.006e^-4	0.402	DOWNSTREAM CR44947 & 1 other INTERGENIC
2R	3420563	2R_3420563_SNP [dm3] 2R_7533058_SNP [dm6]	C	G	2.015e^-4	0.402	UPSTREAM Cyt-b5 & 1 other DOWNSTREAM CR44209 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2397323	2L_2397323_SNP [dm3] 2L_2397323_SNP [dm6]	T	A	2.015e^-4	0.402	INTRON VGlut
3R	26438022	3R_26438022_SNP [dm3] 3R_30612300_SNP [dm6]	A	G	2.020e^-4	0.402	UPSTREAM CR45571 EXON CR45571
2L	14038738	2L_14038738_SNP [dm3] 2L_14038738_SNP [dm6]	G	A	2.020e^-4	0.402	UPSTREAM CR45284 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12724589	2L_12724589_SNP [dm3] 2L_12724589_SNP [dm6]	C	T	2.020e^-4	0.402	SYNONYMOUS_CODING MRP INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21513901	3R_21513901_SNP [dm3] 3R_25688179_SNP [dm6]	G	A	2.022e^-4	0.402	UPSTREAM CLS INTERGENIC
2R	2970233	2R_2970233_SNP [dm3] 2R_7082728_SNP [dm6]	T	A	2.024e^-4	0.402	INTERGENIC
2R	4831141	2R_4831141_SNP [dm3] 2R_8943636_SNP [dm6]	C	A	2.025e^-4	0.402	DOWNSTREAM CG8230 EXON CR44274
3R	8624113	3R_8624113_SNP [dm3] 3R_12798391_SNP [dm6]	A	G	2.025e^-4	0.402	INTERGENIC
2L	14319831	2L_14319831_SNP [dm3] 2L_14319831_SNP [dm6]	G	A	2.028e^-4	0.402	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19649114	2R_19649114_SNP [dm3] 2R_23761591_SNP [dm6]	A	T	2.028e^-4	0.402	INTRON CG9850
3L	16335959	3L_16335959_SNP [dm3] 3L_16342859_SNP [dm6]	C	G	2.035e^-4	0.402	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
3R	21510456	3R_21510456_SNP [dm3] 3R_25684734_SNP [dm6]	C	T	2.038e^-4	0.402	DOWNSTREAM CG5028 & 1 other INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	6018933	2L_6018933_SNP [dm3] 2L_6018933_SNP [dm6]	G	A	2.039e^-4	0.402	SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
2L	2085648	2L_2085648_SNP [dm3] 2L_2085648_SNP [dm6]	A	T	2.041e^-4	0.402	INTRON dpr3
3R	17346352	3R_17346352_SNP [dm3] 3R_21520630_SNP [dm6]	T	A	2.042e^-4	0.402	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
3L	6799867	3L_6799867_SNP [dm3] 3L_6806767_SNP [dm6]	G	C	2.042e^-4	0.402	INTERGENIC	regulatory region REDfly_CRMs
3R	16337934	3R_16337934_SNP [dm3] 3R_20512212_SNP [dm6]	T	A	2.044e^-4	0.402	INTRON CG4288
2L	1760828	2L_1760828_SNP [dm3] 2L_1760828_SNP [dm6]	G	A	2.048e^-4	0.402	INTERGENIC
2L	1760835	2L_1760835_SNP [dm3] 2L_1760835_SNP [dm6]	A	G	2.048e^-4	0.402	INTERGENIC
2R	15185796	2R_15185796_SNP [dm3] 2R_19298291_SNP [dm6]	A	C	2.053e^-4	0.403	UTR_5_PRIME Tab2 INTRON Tab2	TF binding site mE1_TFBS_Trl
2R	7267489	2R_7267489_SNP [dm3] 2R_11379984_SNP [dm6]	C	A	2.060e^-4	0.403	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
X	14522268	X_14522268_DEL [dm3] X_14628235_DEL [dm6]	CTATCTGCGATGTCCGAACA...	C	2.061e^-4	0.403	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17062409	2R_17062409_SNP [dm3] 2R_21174904_SNP [dm6]	T	C	2.061e^-4	0.403	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10096969	2R_10096969_SNP [dm3] 2R_14209464_SNP [dm6]	G	C	2.070e^-4	0.404	INTRON Sox15	regulatory region REDfly_CRMs
2L	3694652	2L_3694652_SNP [dm3] 2L_3694652_SNP [dm6]	G	A	2.071e^-4	0.404	SYNONYMOUS_CODING CG43165 UPSTREAM Acp24A4 & 1 other DOWNSTREAM CG16713
2R	16501580	2R_16501580_DEL [dm3] 2R_20614075_DEL [dm6]	CCATAATA	G	2.075e^-4	0.404	INTRON Hil	TF binding site BDTNP1_TFBS_dl
3L	14367085	3L_14367085_SNP [dm3] 3L_14373985_SNP [dm6]	T	C	2.077e^-4	0.404	INTERGENIC
3R	16875591	3R_16875591_SNP [dm3] 3R_21049869_SNP [dm6]	C	A	2.077e^-4	0.404	DOWNSTREAM CG17279 INTERGENIC
3R	7631248	3R_7631248_SNP [dm3] 3R_11805526_SNP [dm6]	C	G	2.078e^-4	0.404	UPSTREAM ClC-a INTRON ClC-a
2L	12728181	2L_12728181_SNP [dm3] 2L_12728181_SNP [dm6]	C	T	2.084e^-4	0.404	SYNONYMOUS_CODING MRP INTRON MRP
3R	22454723	3R_22454723_SNP [dm3] 3R_26629001_SNP [dm6]	G	A	2.086e^-4	0.404	UPSTREAM TwdlK & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2085848	2L_2085848_SNP [dm3] 2L_2085848_SNP [dm6]	T	C	2.089e^-4	0.404	INTRON dpr3
3L	18668846	3L_18668846_DEL [dm3] 3L_18675746_DEL [dm6]	AA	A	2.094e^-4	0.404	UPSTREAM GNBP1 & 1 other INTERGENIC
2R	15150825	2R_15150825_SNP [dm3] 2R_19263320_SNP [dm6]	T	C	2.095e^-4	0.404	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8167877	3L_8167877_SNP [dm3] 3L_8174777_SNP [dm6]	C	T	2.095e^-4	0.404	NON_SYNONYMOUS_CODING RecQ4
2L	12511392	2L_12511392_SNP [dm3] 2L_12511392_SNP [dm6]	G	T	2.097e^-4	0.404	INTRON bun
3L	9763925	3L_9763925_SNP [dm3] 3L_9770825_SNP [dm6]	G	T	2.101e^-4	0.404	INTRON CG8177
2R	12501850	2R_12501850_SNP [dm3] 2R_16614345_SNP [dm6]	T	C	2.101e^-4	0.404	INTRON CG5065
2R	13919894	2R_13919894_SNP [dm3] 2R_18032389_SNP [dm6]	C	T	2.104e^-4	0.404	INTERGENIC	transposable element FlyBase
3L	15274926	3L_15274926_SNP [dm3] 3L_15281826_SNP [dm6]	A	C	2.108e^-4	0.404	INTERGENIC
2L	11857355	2L_11857355_SNP [dm3] 2L_11857355_SNP [dm6]	G	A	2.110e^-4	0.404	INTRON Pde1c
3R	23294141	3R_23294141_SNP [dm3] 3R_27468419_SNP [dm6]	T	G	2.111e^-4	0.404	INTERGENIC
X	14085180	X_14085180_SNP [dm3] X_14191147_SNP [dm6]	T	G	2.112e^-4	0.404	DOWNSTREAM CG13403 & 1 other INTERGENIC
2R	7230669	2R_7230669_SNP [dm3] 2R_11343164_SNP [dm6]	T	A	2.113e^-4	0.404	UPSTREAM thetaTry INTERGENIC
2R	15078073	2R_15078073_SNP [dm3] 2R_19190568_SNP [dm6]	G	T	2.114e^-4	0.404	INTRON hppy
2R	13983734	2R_13983734_SNP [dm3] 2R_18096229_SNP [dm6]	T	C	2.118e^-4	0.404	INTRON CG5098	TF binding site mE1_TFBS_chinmo
2R	13687460	2R_13687460_SNP [dm3] 2R_17799955_SNP [dm6]	A	T	2.122e^-4	0.405	UTR_3_PRIME Dhit DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10219124	2L_10219124_INS [dm3] 2L_10219124_INS [dm6]	T	TGTAT	2.124e^-4	0.405	INTRON Npc1a
2R	8862330	2R_8862330_DEL [dm3] 2R_12974825_DEL [dm6]	AGCCGAAA	A	2.130e^-4	0.405	INTRON Psc	TF binding site BDTNP1_TFBS_dl
3R	26176131	3R_26176131_SNP [dm3] 3R_30350409_SNP [dm6]	A	G	2.131e^-4	0.405	INTRON hdc
2L	2397231	2L_2397231_SNP [dm3] 2L_2397231_SNP [dm6]	T	A	2.132e^-4	0.405	INTRON VGlut
2R	11628829	2R_11628829_INS [dm3] 2R_15741324_INS [dm6]	T	TTGAATCGAGTCGATT...	2.133e^-4	0.405	INTRON CG30089	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8091346	3R_8091346_SNP [dm3] 3R_12265624_SNP [dm6]	C	T	2.138e^-4	0.405	INTRON svp	TF binding site mE1_TFBS_chinmo
3R	15600241	3R_15600241_SNP [dm3] 3R_19774519_SNP [dm6]	T	A	2.139e^-4	0.405	DOWNSTREAM CG11659 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
X	4646755	X_4646755_SNP [dm3] X_4752722_SNP [dm6]	A	T	2.142e^-4	0.405	INTERGENIC
2L	6739748	2L_6739748_SNP [dm3] 2L_6739748_SNP [dm6]	C	T	2.144e^-4	0.405	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12288015	2L_12288015_SNP [dm3] 2L_12288015_SNP [dm6]	T	A	2.144e^-4	0.405	INTRON aret
3R	22467459	3R_22467459_SNP [dm3] 3R_26641737_SNP [dm6]	G	A	2.147e^-4	0.405	DOWNSTREAM TwdlD INTERGENIC
2L	13359809	2L_13359809_DEL [dm3] 2L_13359809_DEL [dm6]	AGGAAAGCTGGTCA...	A	2.156e^-4	0.405	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15078063	2R_15078063_SNP [dm3] 2R_19190558_SNP [dm6]	A	G	2.156e^-4	0.405	INTRON hppy
3L	8820382	3L_8820382_SNP [dm3] 3L_8827282_SNP [dm6]	A	C	2.158e^-4	0.405	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7049229	2L_7049229_SNP [dm3] 2L_7049229_SNP [dm6]	C	T	2.159e^-4	0.405	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	6973967	3L_6973967_SNP [dm3] 3L_6980867_SNP [dm6]	A	G	2.159e^-4	0.405	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12501848	2R_12501848_SNP [dm3] 2R_16614343_SNP [dm6]	A	G	2.162e^-4	0.405	INTRON CG5065

By genomic position
Variant impact
Gene name

Treatment phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results