DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.936e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06733

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4526	0.0655

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1938 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16326062	2R_16326062_SNP [dm3] 2R_20438557_SNP [dm6]	G	T	1.110e^-7	0.208	INTRON CG12484
2R	16326083	2R_16326083_SNP [dm3] 2R_20438578_SNP [dm6]	G	A	2.436e^-7	0.228	INTRON CG12484
2L	742378	2L_742378_SNP [dm3] 2L_742378_SNP [dm6]	C	A	5.643e^-6	0.934	UPSTREAM Eaat2 INTRON Eaat2
2L	14924296	2L_14924296_SNP [dm3] 2L_14924296_SNP [dm6]	G	A	6.254e^-6	0.934	UPSTREAM CG3491 INTRON CG42313
2R	8117197	2R_8117197_INS [dm3] 2R_12229692_INS [dm6]	A	AA	7.225e^-6	0.934	UPSTREAM CG8854 INTERGENIC
3R	15521660	3R_15521660_DEL [dm3] 3R_19695938_DEL [dm6]	AG	A	9.031e^-6	0.934	INTRON Naam
X	11199003	X_11199003_DEL [dm3] X_11304970_DEL [dm6]	AA	A	9.212e^-6	0.934	INTERGENIC
2L	14924381	2L_14924381_SNP [dm3] 2L_14924381_SNP [dm6]	G	C	9.348e^-6	0.934	UPSTREAM CG3491 INTRON CG42313
3L	18857160	3L_18857160_SNP [dm3] 3L_18864060_SNP [dm6]	C	G	1.131e^-5	0.934	UPSTREAM CG6865 INTRON CG6865
3L	20481999	3L_20481999_SNP [dm3] 3L_20488899_SNP [dm6]	A	G	1.172e^-5	0.934	INTRON ZnT77C
2L	3387058	2L_3387058_DEL [dm3] 2L_3387058_DEL [dm6]	TT	T	1.187e^-5	0.934	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2L	13768866	2L_13768866_DEL [dm3] 2L_13768866_DEL [dm6]	TGT	T	1.193e^-5	0.934	INTRON TM9SF4
2L	3387042	2L_3387042_DEL [dm3] 2L_3387042_DEL [dm6]	GTCGTGCTGCTGC...	G	1.226e^-5	0.934	DOWNSTREAM Sfp23F & 1 other EXON CR45301
3L	4388149	3L_4388149_SNP [dm3] 3L_4388149_SNP [dm6]	A	C	1.247e^-5	0.934	INTRON slow
2R	8118189	2R_8118189_SNP [dm3] 2R_12230684_SNP [dm6]	A	C	1.250e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20125015	2R_20125015_DEL [dm3] 2R_24237492_DEL [dm6]	TGTATT	T	1.274e^-5	0.934	EXON CR44827
2L	3524452	2L_3524452_SNP [dm3] 2L_3524452_SNP [dm6]	T	A	1.310e^-5	0.934	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	14924446	2L_14924446_SNP [dm3] 2L_14924446_SNP [dm6]	T	C	1.336e^-5	0.934	UPSTREAM CG3491 INTRON CG42313
2R	8117914	2R_8117914_SNP [dm3] 2R_12230409_SNP [dm6]	G	A	1.407e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8721954	2L_8721954_SNP [dm3] 2L_8721954_SNP [dm6]	T	A	1.415e^-5	0.934	INTRON raw
3L	5161916	3L_5161916_SNP [dm3] 3L_5168816_SNP [dm6]	C	A	1.469e^-5	0.934	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	14924436	2L_14924436_SNP [dm3] 2L_14924436_SNP [dm6]	T	A	1.500e^-5	0.934	UPSTREAM CG3491 INTRON CG42313
2R	6542049	2R_6542049_SNP [dm3] 2R_10654544_SNP [dm6]	A	T	1.563e^-5	0.934	INTERGENIC
3L	5161915	3L_5161915_SNP [dm3] 3L_5168815_SNP [dm6]	A	T	1.641e^-5	0.934	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	9091567	3L_9091567_SNP [dm3] 3L_9098467_SNP [dm6]	C	A	1.745e^-5	0.934	UTR_3_PRIME bol DOWNSTREAM CG13315
2R	2784987	2R_2784987_SNP [dm3] 2R_6897482_SNP [dm6]	C	T	1.766e^-5	0.934	INTRON CG30158
2L	20624962	2L_20624962_SNP [dm3] 2L_20624962_SNP [dm6]	T	A	1.824e^-5	0.934	INTRON CR44909
2L	8226988	2L_8226988_SNP [dm3] 2L_8226988_SNP [dm6]	G	A	1.881e^-5	0.934	NON_SYNONYMOUS_CODING Pvr INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18857226	3L_18857226_SNP [dm3] 3L_18864126_SNP [dm6]	G	A	1.929e^-5	0.934	UPSTREAM CG6865 INTRON CG6865
3L	18857211	3L_18857211_SNP [dm3] 3L_18864111_SNP [dm6]	G	T	1.937e^-5	0.934	UPSTREAM CG6865 INTRON CG6865
3L	9295994	3L_9295994_SNP [dm3] 3L_9302894_SNP [dm6]	T	C	2.017e^-5	0.934	INTERGENIC
3R	8439490	3R_8439490_SNP [dm3] 3R_12613768_SNP [dm6]	A	C	2.033e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15521671	3R_15521671_SNP [dm3] 3R_19695949_SNP [dm6]	A	T	2.084e^-5	0.934	INTRON Naam
2L	14924427	2L_14924427_SNP [dm3] 2L_14924427_SNP [dm6]	C	G	2.108e^-5	0.934	UPSTREAM CG3491 INTRON CG42313
2L	4476691	2L_4476691_SNP [dm3] 2L_4476691_SNP [dm6]	G	A	2.148e^-5	0.934	START_GAINED ine UTR_5_PRIME ine DOWNSTREAM dp INTRON ine
3R	2746968	3R_2746968_DEL [dm3] 3R_6921246_DEL [dm6]	TT	T	2.152e^-5	0.934	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20125014	2R_20125014_SNP [dm3] 2R_24237491_SNP [dm6]	T	A	2.375e^-5	0.934	EXON CR44827
2L	16542801	2L_16542801_SNP [dm3] 2L_16542801_SNP [dm6]	C	A	2.485e^-5	0.934	INTRON CG31816
2L	4284531	2L_4284531_SNP [dm3] 2L_4284531_SNP [dm6]	T	G	2.560e^-5	0.934	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	685941	2L_685941_SNP [dm3] 2L_685941_SNP [dm6]	G	A	2.639e^-5	0.934	INTRON ds
2R	6823074	2R_6823074_SNP [dm3] 2R_10935569_SNP [dm6]	G	A	2.682e^-5	0.934	INTERGENIC
2L	3058871	2L_3058871_SNP [dm3] 2L_3058871_SNP [dm6]	T	C	2.863e^-5	0.934	INTRON CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	11742942	X_11742942_SNP [dm3] X_11848909_SNP [dm6]	A	T	2.922e^-5	0.934	DOWNSTREAM CR45619 INTERGENIC
3R	26621060	3R_26621060_SNP [dm3] 3R_30795338_SNP [dm6]	A	T	2.955e^-5	0.934	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2778850	2R_2778850_SNP [dm3] 2R_6891345_SNP [dm6]	T	A	2.957e^-5	0.934	UPSTREAM CG30158 INTERGENIC
2R	6610901	2R_6610901_SNP [dm3] 2R_10723396_SNP [dm6]	T	C	3.037e^-5	0.934	UTR_3_PRIME Rab3	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16104602	2R_16104602_SNP [dm3] 2R_20217097_SNP [dm6]	T	C	3.079e^-5	0.934	INTERGENIC
2R	8120570	2R_8120570_SNP [dm3] 2R_12233065_SNP [dm6]	A	T	3.127e^-5	0.934	DOWNSTREAM CR44313 INTERGENIC
3R	4908150	3R_4908150_SNP [dm3] 3R_9082428_SNP [dm6]	G	C	3.146e^-5	0.934	INTRON pum
3R	23400135	3R_23400135_SNP [dm3] 3R_27574413_SNP [dm6]	C	T	3.159e^-5	0.934	INTRON wdb
3L	9296468	3L_9296468_SNP [dm3] 3L_9303368_SNP [dm6]	G	C	3.191e^-5	0.934	INTERGENIC
3R	25353341	3R_25353341_SNP [dm3] 3R_29527619_SNP [dm6]	G	T	3.212e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_inv
X	8049259	X_8049259_SNP [dm3] X_8155226_SNP [dm6]	A	G	3.269e^-5	0.934	UTR_3_PRIME Traf6 DOWNSTREAM CG18262
3R	25620269	3R_25620269_SNP [dm3] 3R_29794547_SNP [dm6]	G	A	3.503e^-5	0.934	UPSTREAM sro DOWNSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14924429	2L_14924429_SNP [dm3] 2L_14924429_SNP [dm6]	C	A	3.527e^-5	0.934	UPSTREAM CG3491 INTRON CG42313
2L	9862700	2L_9862700_SNP [dm3] 2L_9862700_SNP [dm6]	T	C	3.554e^-5	0.934	INTRON nAChRalpha6
2R	20125072	2R_20125072_SNP [dm3] 2R_24237549_SNP [dm6]	T	C	3.615e^-5	0.934	EXON CR44827
2L	14993247	2L_14993247_SNP [dm3] 2L_14993247_SNP [dm6]	G	A	3.627e^-5	0.934	INTRON mol
2L	14993394	2L_14993394_SNP [dm3] 2L_14993394_SNP [dm6]	C	T	3.629e^-5	0.934	INTRON mol
3L	18857152	3L_18857152_SNP [dm3] 3L_18864052_SNP [dm6]	A	T	3.687e^-5	0.934	UPSTREAM CG6865 INTRON CG6865
3L	13086689	3L_13086689_SNP [dm3] 3L_13093589_SNP [dm6]	A	G	3.709e^-5	0.934	INTERGENIC
2L	4319879	2L_4319879_SNP [dm3] 2L_4319879_SNP [dm6]	C	T	3.710e^-5	0.934	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8057674	2L_8057674_SNP [dm3] 2L_8057674_SNP [dm6]	C	T	3.722e^-5	0.934	SYNONYMOUS_CODING poe
2L	1722348	2L_1722348_SNP [dm3] 2L_1722348_SNP [dm6]	A	G	3.771e^-5	0.934	INTRON Rim2
2L	9859200	2L_9859200_SNP [dm3] 2L_9859200_SNP [dm6]	T	A	3.803e^-5	0.934	INTRON nAChRalpha6
2L	16527310	2L_16527310_INS [dm3] 2L_16527310_INS [dm6]	T	TT	3.824e^-5	0.934	INTRON CG5953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10921067	3L_10921067_SNP [dm3] 3L_10927967_SNP [dm6]	G	A	3.857e^-5	0.934	INTERGENIC
2R	6634160	2R_6634160_SNP [dm3] 2R_10746655_SNP [dm6]	T	G	3.859e^-5	0.934	INTRON CG33144
2L	2548057	2L_2548057_SNP [dm3] 2L_2548057_SNP [dm6]	T	G	3.964e^-5	0.934	INTERGENIC
3L	20456601	3L_20456601_SNP [dm3] 3L_20463501_SNP [dm6]	T	A	3.968e^-5	0.934	INTRON CG5195
3R	11325721	3R_11325721_SNP [dm3] 3R_15499999_SNP [dm6]	G	A	4.000e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18918330	2R_18918330_SNP [dm3] 2R_23030807_SNP [dm6]	C	T	4.091e^-5	0.934	INTRON twi & 1 other
2L	19451705	2L_19451705_DEL [dm3] 2L_19451705_DEL [dm6]	AA	A	4.142e^-5	0.934	INTRON Top2	TF binding site mE1_TFBS_sens
2L	15244672	2L_15244672_SNP [dm3] 2L_15244672_SNP [dm6]	G	A	4.171e^-5	0.934	INTRON ZnT35C
X	7001657	X_7001657_SNP [dm3] X_7107624_SNP [dm6]	C	T	4.174e^-5	0.934	SYNONYMOUS_CODING fz4	TF binding site mE1_TFBS_sens
2L	2548055	2L_2548055_SNP [dm3] 2L_2548055_SNP [dm6]	T	A	4.298e^-5	0.934	INTERGENIC
2L	5090990	2L_5090990_SNP [dm3] 2L_5090990_SNP [dm6]	A	G	4.371e^-5	0.934	INTRON pgant5
2R	20703654	2R_20703654_SNP [dm3] 2R_24816131_SNP [dm6]	A	G	4.376e^-5	0.934	INTRON Dll
X	11742936	X_11742936_SNP [dm3] X_11848903_SNP [dm6]	A	G	4.428e^-5	0.934	DOWNSTREAM CR45619 INTERGENIC
2R	2768828	2R_2768828_SNP [dm3] 2R_6881323_SNP [dm6]	A	T	4.464e^-5	0.934	UPSTREAM Spn42Dc & 1 other INTRON Spn42Dc
3R	23875684	3R_23875684_SNP [dm3] 3R_28049962_SNP [dm6]	C	A	4.571e^-5	0.934	NON_SYNONYMOUS_CODING CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	7001513	X_7001513_SNP [dm3] X_7107480_SNP [dm6]	C	G	4.575e^-5	0.934	SYNONYMOUS_CODING fz4
2L	2170559	2L_2170559_SNP [dm3] 2L_2170559_SNP [dm6]	G	A	4.648e^-5	0.934	INTRON aop	regulatory region REDfly_CRMs
X	19416192	X_19416192_SNP [dm3] X_19522159_SNP [dm6]	T	C	4.741e^-5	0.934	UTR_5_PRIME CoRest UPSTREAM l_1_G0156 INTRON CoRest	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	21979327	3R_21979327_DEL [dm3] 3R_26153605_DEL [dm6]	GG	G	4.755e^-5	0.934	INTERGENIC
2L	4811922	2L_4811922_SNP [dm3] 2L_4811922_SNP [dm6]	A	G	4.799e^-5	0.934	EXON CR45297	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	14387814	3L_14387814_SNP [dm3] 3L_14394714_SNP [dm6]	G	A	4.830e^-5	0.934	INTERGENIC
2L	1414167	2L_1414167_SNP [dm3] 2L_1414167_SNP [dm6]	C	A	4.853e^-5	0.934	INTRON lea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1414177	2L_1414177_SNP [dm3] 2L_1414177_SNP [dm6]	C	T	4.853e^-5	0.934	INTRON lea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2548073	2L_2548073_SNP [dm3] 2L_2548073_SNP [dm6]	G	A	4.872e^-5	0.934	INTERGENIC
2R	8121141	2R_8121141_SNP [dm3] 2R_12233636_SNP [dm6]	G	A	4.949e^-5	0.934	DOWNSTREAM CR44313 INTERGENIC
X	6854738	X_6854738_SNP [dm3] X_6960705_SNP [dm6]	C	G	4.999e^-5	0.934	INTRON CG14431 & 1 other
3R	22587358	3R_22587358_SNP [dm3] 3R_26761636_SNP [dm6]	C	T	5.013e^-5	0.934	INTERGENIC
2R	2497620	2R_2497620_SNP [dm3] 2R_6610115_SNP [dm6]	G	T	5.068e^-5	0.934	UPSTREAM jing INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8536111	3L_8536111_SNP [dm3] 3L_8543011_SNP [dm6]	G	A	5.129e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	2747286	2R_2747286_SNP [dm3] 2R_6859781_SNP [dm6]	C	A	5.209e^-5	0.934	INTERGENIC
3R	20245171	3R_20245171_SNP [dm3] 3R_24419449_SNP [dm6]	G	A	5.241e^-5	0.934	INTRON nAChRalpha1
X	11742946	X_11742946_SNP [dm3] X_11848913_SNP [dm6]	C	T	5.267e^-5	0.934	DOWNSTREAM CR45619 INTERGENIC
2L	8057506	2L_8057506_SNP [dm3] 2L_8057506_SNP [dm6]	C	T	5.315e^-5	0.934	SYNONYMOUS_CODING poe
2L	17111901	2L_17111901_SNP [dm3] 2L_17111901_SNP [dm6]	T	C	5.338e^-5	0.934	INTERGENIC
2L	16520453	2L_16520453_SNP [dm3] 2L_16520453_SNP [dm6]	A	T	5.382e^-5	0.934	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	21980812	3R_21980812_SNP [dm3] 3R_26155090_SNP [dm6]	A	G	5.430e^-5	0.934	INTERGENIC
3L	17301750	3L_17301750_SNP [dm3] 3L_17308650_SNP [dm6]	G	A	5.430e^-5	0.934	INTERGENIC
2L	13619669	2L_13619669_SNP [dm3] 2L_13619669_SNP [dm6]	T	C	5.439e^-5	0.934	INTRON kuz
2R	20125046	2R_20125046_SNP [dm3] 2R_24237523_SNP [dm6]	T	G	5.535e^-5	0.934	EXON CR44827
2L	17210708	2L_17210708_SNP [dm3] 2L_17210708_SNP [dm6]	T	A	5.608e^-5	0.934	INTRON beat-IIIc
3L	9544495	3L_9544495_SNP [dm3] 3L_9551395_SNP [dm6]	C	T	5.651e^-5	0.934	INTRON CG42673
2L	16244119	2L_16244119_SNP [dm3] 2L_16244119_SNP [dm6]	T	A	5.655e^-5	0.934	NON_SYNONYMOUS_CODING CG42818
3R	21979301	3R_21979301_SNP [dm3] 3R_26153579_SNP [dm6]	A	C	5.665e^-5	0.934	INTERGENIC
3L	15769432	3L_15769432_SNP [dm3] 3L_15776332_SNP [dm6]	A	T	5.706e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18918321	2R_18918321_SNP [dm3] 2R_23030798_SNP [dm6]	C	T	5.800e^-5	0.934	INTRON twi & 1 other
2L	1621858	2L_1621858_SNP [dm3] 2L_1621858_SNP [dm6]	C	A	5.961e^-5	0.934	EXON CR44603
X	13679109	X_13679109_SNP [dm3] X_13785076_SNP [dm6]	C	T	5.962e^-5	0.934	INTRON inaE	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2548059	2L_2548059_SNP [dm3] 2L_2548059_SNP [dm6]	T	C	6.072e^-5	0.934	INTERGENIC
3L	9296614	3L_9296614_SNP [dm3] 3L_9303514_SNP [dm6]	C	T	6.125e^-5	0.934	INTERGENIC
3L	13086314	3L_13086314_SNP [dm3] 3L_13093214_SNP [dm6]	T	A	6.150e^-5	0.934	INTERGENIC
3L	10712937	3L_10712937_SNP [dm3] 3L_10719837_SNP [dm6]	T	A	6.174e^-5	0.934	INTERGENIC
3L	14388262	3L_14388262_SNP [dm3] 3L_14395162_SNP [dm6]	A	T	6.214e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21848336	2L_21848336_SNP [dm3] 2L_21848336_SNP [dm6]	T	A	6.219e^-5	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1482086	3R_1482086_SNP [dm3] 3R_5656364_SNP [dm6]	C	T	6.257e^-5	0.934	NON_SYNONYMOUS_CODING CG2182 DOWNSTREAM MED27
2L	1661320	2L_1661320_SNP [dm3] 2L_1661320_SNP [dm6]	T	C	6.277e^-5	0.934	INTRON chinmo
2L	16644020	2L_16644020_SNP [dm3] 2L_16644020_SNP [dm6]	C	A	6.450e^-5	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	21142768	3R_21142768_SNP [dm3] 3R_25317046_SNP [dm6]	G	A	6.477e^-5	0.934	SYNONYMOUS_CODING CG10553 UPSTREAM CG10559
2L	16523364	2L_16523364_SNP [dm3] 2L_16523364_SNP [dm6]	G	T	6.521e^-5	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	757681	2L_757681_SNP [dm3] 2L_757681_SNP [dm6]	C	T	6.581e^-5	0.934	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	591607	3L_591607_SNP [dm3] 3L_591607_SNP [dm6]	G	T	6.774e^-5	0.934	INTERGENIC
3L	14489705	3L_14489705_SNP [dm3] 3L_14496605_SNP [dm6]	A	T	6.810e^-5	0.934	INTRON bbg
3R	12415717	3R_12415717_SNP [dm3] 3R_16589995_SNP [dm6]	C	T	6.849e^-5	0.934	INTERGENIC
2L	16542507	2L_16542507_SNP [dm3] 2L_16542507_SNP [dm6]	A	C	6.863e^-5	0.934	UPSTREAM CG31816 INTERGENIC
2L	2548151	2L_2548151_SNP [dm3] 2L_2548151_SNP [dm6]	C	T	6.908e^-5	0.934	INTERGENIC
X	8796682	X_8796682_SNP [dm3] X_8902649_SNP [dm6]	C	T	6.957e^-5	0.934	SYNONYMOUS_CODING Rbm13
2L	19216496	2L_19216496_SNP [dm3] 2L_19216496_SNP [dm6]	A	T	6.987e^-5	0.934	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	2172017	2L_2172017_SNP [dm3] 2L_2172017_SNP [dm6]	G	A	7.037e^-5	0.934	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2544700	2L_2544700_SNP [dm3] 2L_2544700_SNP [dm6]	G	C	7.110e^-5	0.934	INTERGENIC
2L	4061264	2L_4061264_SNP [dm3] 2L_4061264_SNP [dm6]	C	T	7.232e^-5	0.934	INTRON ed
2L	11157309	2L_11157309_SNP [dm3] 2L_11157309_SNP [dm6]	A	G	7.395e^-5	0.934	UTR_3_PRIME Ca-beta
2L	1721267	2L_1721267_DEL [dm3] 2L_1721267_DEL [dm6]	CTAGGCTCC	C	7.447e^-5	0.934	INTRON Rim2
3L	14494833	3L_14494833_SNP [dm3] 3L_14501733_SNP [dm6]	G	A	7.555e^-5	0.934	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	16789644	3R_16789644_SNP [dm3] 3R_20963922_SNP [dm6]	C	T	7.611e^-5	0.934	SPLICE_SITE_REGION Atpalpha INTRON Atpalpha	TF binding site mE1_TFBS_cad
3L	18641675	3L_18641675_SNP [dm3] 3L_18648575_SNP [dm6]	G	T	7.707e^-5	0.934	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
2L	2548051	2L_2548051_DEL [dm3] 2L_2548051_DEL [dm6]	TA	C	7.739e^-5	0.934	INTERGENIC
2L	2548045	2L_2548045_SNP [dm3] 2L_2548045_SNP [dm6]	T	A	7.839e^-5	0.934	INTERGENIC
3R	26598398	3R_26598398_SNP [dm3] 3R_30772676_SNP [dm6]	T	C	7.869e^-5	0.934	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14009224	2R_14009224_SNP [dm3] 2R_18121719_SNP [dm6]	C	T	7.980e^-5	0.934	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15081946	2R_15081946_SNP [dm3] 2R_19194441_SNP [dm6]	G	A	7.995e^-5	0.934	INTRON hppy
3R	13769349	3R_13769349_SNP [dm3] 3R_17943627_SNP [dm6]	A	C	8.029e^-5	0.934	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15433769	2R_15433769_SNP [dm3] 2R_19546264_SNP [dm6]	A	C	8.047e^-5	0.934	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	25599788	3R_25599788_SNP [dm3] 3R_29774066_SNP [dm6]	T	C	8.080e^-5	0.934	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21142786	3R_21142786_SNP [dm3] 3R_25317064_SNP [dm6]	A	G	8.114e^-5	0.934	SYNONYMOUS_CODING CG10553 UPSTREAM CG10559
3R	14772980	3R_14772980_SNP [dm3] 3R_18947258_SNP [dm6]	A	T	8.161e^-5	0.934	INTRON CG42613
2R	18651935	2R_18651935_SNP [dm3] 2R_22764430_SNP [dm6]	A	T	8.182e^-5	0.934	INTRON CG42260 & 1 other
2L	19675725	2L_19675725_SNP [dm3] 2L_19675725_SNP [dm6]	T	C	8.194e^-5	0.934	INTRON Lar
3L	5324806	3L_5324806_SNP [dm3] 3L_5331706_SNP [dm6]	C	T	8.323e^-5	0.934	INTERGENIC
3L	13086317	3L_13086317_SNP [dm3] 3L_13093217_SNP [dm6]	C	T	8.340e^-5	0.934	INTERGENIC
2L	935319	2L_935319_DEL [dm3] 2L_935319_DEL [dm6]	CGATTTCATTTCTCTAGA...	C	8.366e^-5	0.934	INTRON CG4341	TF binding site mE1_TFBS_Trl
2L	13622043	2L_13622043_SNP [dm3] 2L_13622043_SNP [dm6]	T	C	8.376e^-5	0.934	INTRON kuz
2R	6546572	2R_6546572_SNP [dm3] 2R_10659067_SNP [dm6]	A	C	8.430e^-5	0.934	INTERGENIC
2L	2548156	2L_2548156_SNP [dm3] 2L_2548156_SNP [dm6]	T	A	8.434e^-5	0.934	INTERGENIC
2L	2577523	2L_2577523_SNP [dm3] 2L_2577523_SNP [dm6]	G	T	8.507e^-5	0.934	UPSTREAM insv & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2548128	2L_2548128_SNP [dm3] 2L_2548128_SNP [dm6]	T	A	8.546e^-5	0.934	INTERGENIC
2L	7191071	2L_7191071_SNP [dm3] 2L_7191071_SNP [dm6]	T	G	8.650e^-5	0.934	UTR_3_PRIME CG4497
3R	23681188	3R_23681188_SNP [dm3] 3R_27855466_SNP [dm6]	G	A	8.669e^-5	0.934	INTRON CG34353
3L	5324465	3L_5324465_SNP [dm3] 3L_5331365_SNP [dm6]	C	T	8.751e^-5	0.934	INTERGENIC
2L	1082749	2L_1082749_SNP [dm3] 2L_1082749_SNP [dm6]	T	C	8.788e^-5	0.934	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
2R	18651592	2R_18651592_SNP [dm3] 2R_22764087_SNP [dm6]	C	T	8.891e^-5	0.934	INTRON CG42260 & 1 other
3R	13765468	3R_13765468_INS [dm3] 3R_17939746_INS [dm6]	G	GA	8.915e^-5	0.934	INTRON cpo	TF binding site mE1_TFBS_sens
3L	20786766	3L_20786766_SNP [dm3] 3L_20793666_SNP [dm6]	G	A	8.962e^-5	0.934	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2396996	2L_2396996_SNP [dm3] 2L_2396996_SNP [dm6]	G	C	8.982e^-5	0.934	INTRON VGlut
2R	18651939	2R_18651939_SNP [dm3] 2R_22764434_SNP [dm6]	T	C	9.019e^-5	0.934	INTRON CG42260 & 1 other
2L	16051667	2L_16051667_SNP [dm3] 2L_16051667_SNP [dm6]	C	T	9.033e^-5	0.934	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2R	6609472	2R_6609472_SNP [dm3] 2R_10721967_SNP [dm6]	T	A	9.064e^-5	0.934	UTR_3_PRIME Rab3 DOWNSTREAM stan
2L	13973157	2L_13973157_SNP [dm3] 2L_13973157_SNP [dm6]	T	A	9.071e^-5	0.934	UPSTREAM He DOWNSTREAM NimC1 & 1 other INTERGENIC
2L	3384176	2L_3384176_SNP [dm3] 2L_3384176_SNP [dm6]	T	C	9.242e^-5	0.934	INTERGENIC
2L	17111593	2L_17111593_SNP [dm3] 2L_17111593_SNP [dm6]	T	C	9.274e^-5	0.934	INTERGENIC
3R	21368437	3R_21368437_SNP [dm3] 3R_25542715_SNP [dm6]	T	C	9.322e^-5	0.934	INTRON msi
3L	7388989	3L_7388989_SNP [dm3] 3L_7395889_SNP [dm6]	C	T	9.417e^-5	0.934	SYNONYMOUS_CODING CG8563 UPSTREAM CG32379
3L	18279330	3L_18279330_DEL [dm3] 3L_18286230_DEL [dm6]	GCAT	G	9.430e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	2548158	2L_2548158_SNP [dm3] 2L_2548158_SNP [dm6]	A	T	9.643e^-5	0.934	INTERGENIC
2R	3864423	2R_3864423_SNP [dm3] 2R_7976918_SNP [dm6]	C	G	9.711e^-5	0.934	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad
2L	2548071	2L_2548071_SNP [dm3] 2L_2548071_SNP [dm6]	A	T	9.750e^-5	0.934	INTERGENIC
2R	18377238	2R_18377238_SNP [dm3] 2R_22489733_SNP [dm6]	G	A	9.834e^-5	0.934	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16523190	2L_16523190_SNP [dm3] 2L_16523190_SNP [dm6]	T	C	1.009e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1493684	3R_1493684_DEL [dm3] 3R_5667962_DEL [dm6]	AA	A	1.010e^-4	0.934	INTRON Xe7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20248178	3R_20248178_SNP [dm3] 3R_24422456_SNP [dm6]	G	T	1.012e^-4	0.934	INTRON nAChRalpha1
3R	9831455	3R_9831455_SNP [dm3] 3R_14005733_SNP [dm6]	G	A	1.031e^-4	0.934	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	9726042	3L_9726042_SNP [dm3] 3L_9732942_SNP [dm6]	A	G	1.032e^-4	0.934	NON_SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986
3R	11366703	3R_11366703_SNP [dm3] 3R_15540981_SNP [dm6]	G	A	1.036e^-4	0.934	INTRON CG18519	TF binding site mE1_TFBS_chinmo
2L	4726356	2L_4726356_SNP [dm3] 2L_4726356_SNP [dm6]	C	T	1.037e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4726357	2L_4726357_SNP [dm3] 2L_4726357_SNP [dm6]	C	T	1.037e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17089988	3L_17089988_SNP [dm3] 3L_17096888_SNP [dm6]	A	T	1.038e^-4	0.934	INTRON Rbp6
2R	2678827	2R_2678827_SNP [dm3] 2R_6791322_SNP [dm6]	T	A	1.039e^-4	0.934	INTRON Epac	TF binding site mE1_TFBS_cad
3L	6363379	3L_6363379_SNP [dm3] 3L_6370279_SNP [dm6]	C	T	1.041e^-4	0.934	EXON CR45419
2R	2678581	2R_2678581_SNP [dm3] 2R_6791076_SNP [dm6]	A	T	1.045e^-4	0.934	INTRON Epac
2L	2548064	2L_2548064_SNP [dm3] 2L_2548064_SNP [dm6]	G	A	1.052e^-4	0.934	INTERGENIC
X	2097866	X_2097866_SNP [dm3] X_2203833_SNP [dm6]	G	A	1.054e^-4	0.934	UTR_5_PRIME CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
X	4831509	X_4831509_SNP [dm3] X_4937476_SNP [dm6]	G	A	1.062e^-4	0.934	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14871683	2L_14871683_SNP [dm3] 2L_14871683_SNP [dm6]	A	G	1.066e^-4	0.934	SYNONYMOUS_CODING CG4480
3R	12416507	3R_12416507_SNP [dm3] 3R_16590785_SNP [dm6]	T	A	1.071e^-4	0.934	INTERGENIC
3R	20492166	3R_20492166_SNP [dm3] 3R_24666444_SNP [dm6]	T	G	1.079e^-4	0.934	INTRON slo	regulatory region REDfly_CRMs
2L	1660429	2L_1660429_SNP [dm3] 2L_1660429_SNP [dm6]	C	T	1.082e^-4	0.934	INTRON chinmo
2R	7732412	2R_7732412_SNP [dm3] 2R_11844907_SNP [dm6]	T	A	1.100e^-4	0.934	SYNONYMOUS_CODING CG43190 UPSTREAM S2P & 1 other EXON CR44304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16523183	2L_16523183_DEL [dm3] 2L_16523183_DEL [dm6]	ATGTA	A	1.102e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6218933	2L_6218933_SNP [dm3] 2L_6218933_SNP [dm6]	G	A	1.118e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15316587	3R_15316587_SNP [dm3] 3R_19490865_SNP [dm6]	A	G	1.128e^-4	0.934	SYNONYMOUS_CODING CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	3977388	3R_3977388_DEL [dm3] 3R_8151666_DEL [dm6]	AAGCCCCA	A	1.130e^-4	0.934	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4639233	3L_4639233_SNP [dm3] 3L_4639233_SNP [dm6]	A	T	1.132e^-4	0.934	INTRON axo
3L	9296545	3L_9296545_DEL [dm3] 3L_9303445_DEL [dm6]	GC	G	1.134e^-4	0.934	INTERGENIC
2L	4476653	2L_4476653_SNP [dm3] 2L_4476653_SNP [dm6]	G	T	1.145e^-4	0.934	DOWNSTREAM dp INTRON ine
2L	9123097	2L_9123097_SNP [dm3] 2L_9123097_SNP [dm6]	G	T	1.147e^-4	0.934	UPSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18925361	2L_18925361_SNP [dm3] 2L_18925361_SNP [dm6]	C	G	1.152e^-4	0.934	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20298551	2R_20298551_SNP [dm3] 2R_24411028_SNP [dm6]	G	A	1.153e^-4	0.934	UTR_5_PRIME SerT UPSTREAM SerT & 2 others	TF binding site mE1_TFBS_HSA
3L	13836270	3L_13836270_SNP [dm3] 3L_13843170_SNP [dm6]	C	A	1.154e^-4	0.934	UPSTREAM CG8757 & 2 others INTERGENIC
3R	13967397	3R_13967397_SNP [dm3] 3R_18141675_SNP [dm6]	A	T	1.165e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13622060	2L_13622060_SNP [dm3] 2L_13622060_SNP [dm6]	C	T	1.167e^-4	0.934	INTRON kuz
2R	7728492	2R_7728492_SNP [dm3] 2R_11840987_SNP [dm6]	G	A	1.182e^-4	0.934	UPSTREAM CG34229 INTERGENIC
2L	19557770	2L_19557770_SNP [dm3] 2L_19557770_SNP [dm6]	T	A	1.186e^-4	0.934	UPSTREAM Tep5 INTERGENIC
3R	2752115	3R_2752115_SNP [dm3] 3R_6926393_SNP [dm6]	T	C	1.186e^-4	0.934	INTRON Antp
2L	14204684	2L_14204684_SNP [dm3] 2L_14204684_SNP [dm6]	C	A	1.190e^-4	0.934	INTRON Dyrk2
2L	19588660	2L_19588660_SNP [dm3] 2L_19588660_SNP [dm6]	C	A	1.196e^-4	0.934	INTRON Lar
2L	962882	2L_962882_DEL [dm3] 2L_962882_DEL [dm6]	CC	C	1.200e^-4	0.934	INTERGENIC
3L	7023540	3L_7023540_SNP [dm3] 3L_7030440_SNP [dm6]	T	A	1.205e^-4	0.934	INTRON Mp
2L	2556482	2L_2556482_SNP [dm3] 2L_2556482_SNP [dm6]	G	A	1.212e^-4	0.934	DOWNSTREAM CR44113 INTERGENIC
3L	4411330	3L_4411330_SNP [dm3] 3L_4411330_SNP [dm6]	C	A	1.214e^-4	0.934	INTRON DOR
3R	14770622	3R_14770622_SNP [dm3] 3R_18944900_SNP [dm6]	T	C	1.215e^-4	0.934	INTRON CG42613
2R	6600854	2R_6600854_SNP [dm3] 2R_10713349_SNP [dm6]	G	C	1.221e^-4	0.934	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8536083	3L_8536083_SNP [dm3] 3L_8542983_SNP [dm6]	C	A	1.228e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1661261	2L_1661261_SNP [dm3] 2L_1661261_SNP [dm6]	C	T	1.229e^-4	0.934	INTRON chinmo
3L	7519634	3L_7519634_SNP [dm3] 3L_7526534_SNP [dm6]	A	C	1.238e^-4	0.934	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_chinmo
2L	12032648	2L_12032648_SNP [dm3] 2L_12032648_SNP [dm6]	G	C	1.239e^-4	0.934	NON_SYNONYMOUS_CODING dmGlut SPLICE_SITE_REGION dmGlut	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2548061	2L_2548061_SNP [dm3] 2L_2548061_SNP [dm6]	T	G	1.242e^-4	0.934	INTERGENIC
2L	19675726	2L_19675726_SNP [dm3] 2L_19675726_SNP [dm6]	C	A	1.252e^-4	0.934	INTRON Lar
X	9747027	X_9747027_SNP [dm3] X_9852994_SNP [dm6]	C	A	1.260e^-4	0.934	UTR_3_PRIME CG32698
3R	21137612	3R_21137612_SNP [dm3] 3R_25311890_SNP [dm6]	T	C	1.261e^-4	0.934	SYNONYMOUS_CODING CG31087 UPSTREAM CG31099
3R	21137511	3R_21137511_SNP [dm3] 3R_25311789_SNP [dm6]	G	A	1.265e^-4	0.934	SYNONYMOUS_CODING CG31087 UPSTREAM CG31099
3L	14389998	3L_14389998_SNP [dm3] 3L_14396898_SNP [dm6]	C	T	1.276e^-4	0.934	INTERGENIC
2R	9592497	2R_9592497_SNP [dm3] 2R_13704992_SNP [dm6]	A	T	1.282e^-4	0.934	INTRON fas
X	3055160	X_3055160_SNP [dm3] X_3161127_SNP [dm6]	C	T	1.282e^-4	0.934	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
X	8044105	X_8044105_SNP [dm3] X_8150072_SNP [dm6]	C	G	1.282e^-4	0.934	SYNONYMOUS_CODING CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17443380	X_17443380_DEL [dm3] X_17549347_DEL [dm6]	TGCAGCCGGAGCTGGACCAT...	T	1.285e^-4	0.934	INTRON CG43658
3L	18751573	3L_18751573_SNP [dm3] 3L_18758473_SNP [dm6]	C	G	1.301e^-4	0.934	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	7670281	2L_7670281_SNP [dm3] 2L_7670281_SNP [dm6]	C	A	1.303e^-4	0.934	INTRON Slob & 1 other
2L	17669955	2L_17669955_SNP [dm3] 2L_17669955_SNP [dm6]	C	T	1.324e^-4	0.934	INTRON CadN
2R	15677869	2R_15677869_SNP [dm3] 2R_19790364_SNP [dm6]	T	C	1.327e^-4	0.934	DOWNSTREAM CR45231 INTERGENIC
3R	22587351	3R_22587351_INS [dm3] 3R_26761629_INS [dm6]	T	TAT	1.327e^-4	0.934	INTERGENIC
2L	3961178	2L_3961178_SNP [dm3] 2L_3961178_SNP [dm6]	T	C	1.328e^-4	0.934	INTRON fred
2L	16643082	2L_16643082_SNP [dm3] 2L_16643082_SNP [dm6]	A	C	1.333e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	12169089	2L_12169089_SNP [dm3] 2L_12169089_SNP [dm6]	G	A	1.334e^-4	0.934	NON_SYNONYMOUS_CODING CG31760 UTR_3_PRIME CG31760
2R	6546579	2R_6546579_SNP [dm3] 2R_10659074_SNP [dm6]	A	C	1.336e^-4	0.934	INTERGENIC
3L	1598394	3L_1598394_SNP [dm3] 3L_1598394_SNP [dm6]	A	G	1.345e^-4	0.934	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1708104	2L_1708104_SNP [dm3] 2L_1708104_SNP [dm6]	G	A	1.345e^-4	0.934	SYNONYMOUS_CODING CG17660 UPSTREAM CR44976	TF binding site mE1_TFBS_cad
2R	8117199	2R_8117199_SNP [dm3] 2R_12229694_SNP [dm6]	T	G	1.345e^-4	0.934	UPSTREAM CG8854 INTERGENIC
2R	7083124	2R_7083124_SNP [dm3] 2R_11195619_SNP [dm6]	T	A	1.351e^-4	0.934	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16526884	2L_16526884_SNP [dm3] 2L_16526884_SNP [dm6]	T	C	1.354e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	16265426	2R_16265426_SNP [dm3] 2R_20377921_SNP [dm6]	C	A	1.359e^-4	0.934	INTERGENIC
2R	17087187	2R_17087187_SNP [dm3] 2R_21199682_SNP [dm6]	C	T	1.370e^-4	0.934	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	11258882	3R_11258882_SNP [dm3] 3R_15433160_SNP [dm6]	T	G	1.375e^-4	0.934	INTRON CG6118
2L	22032349	2L_22032349_DEL [dm3] 2L_22032349_DEL [dm6]	TT	T	1.377e^-4	0.934	UPSTREAM CR45335 INTERGENIC
2L	16597944	2L_16597944_SNP [dm3] 2L_16597944_SNP [dm6]	T	C	1.378e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7193790	3L_7193790_SNP [dm3] 3L_7200690_SNP [dm6]	T	A	1.382e^-4	0.934	INTERGENIC
2L	9468578	2L_9468578_SNP [dm3] 2L_9468578_SNP [dm6]	G	C	1.385e^-4	0.934	INTERGENIC
3L	5524537	3L_5524537_DEL [dm3] 3L_5531437_DEL [dm6]	GTTAACG	G	1.385e^-4	0.934	INTERGENIC
2L	9125488	2L_9125488_SNP [dm3] 2L_9125488_SNP [dm6]	T	A	1.387e^-4	0.934	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	16249643	2L_16249643_SNP [dm3] 2L_16249643_SNP [dm6]	G	C	1.389e^-4	0.934	UTR_5_PRIME PRL-1 INTRON PRL-1
2R	5304311	2R_5304311_SNP [dm3] 2R_9416806_SNP [dm6]	G	A	1.395e^-4	0.934	INTRON wun2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	8000564	2R_8000564_SNP [dm3] 2R_12113059_SNP [dm6]	T	A	1.396e^-4	0.934	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19220665	3R_19220665_SNP [dm3] 3R_23394943_SNP [dm6]	T	C	1.398e^-4	0.934	INTERGENIC
2R	16972415	2R_16972415_SNP [dm3] 2R_21084910_SNP [dm6]	T	G	1.401e^-4	0.934	INTRON Treh	TF binding site mE1_TFBS_cad
X	16763406	X_16763406_SNP [dm3] X_16869373_SNP [dm6]	A	T	1.409e^-4	0.934	INTRON CG13003
2R	2480661	2R_2480661_SNP [dm3] 2R_6593156_SNP [dm6]	G	A	1.410e^-4	0.934	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12169045	2L_12169045_SNP [dm3] 2L_12169045_SNP [dm6]	G	A	1.410e^-4	0.934	SYNONYMOUS_CODING CG31760 UTR_3_PRIME CG31760
2R	6750476	2R_6750476_SNP [dm3] 2R_10862971_SNP [dm6]	G	C	1.411e^-4	0.934	INTRON CG30015
2L	9126606	2L_9126606_SNP [dm3] 2L_9126606_SNP [dm6]	G	T	1.412e^-4	0.934	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	15078935	2R_15078935_SNP [dm3] 2R_19191430_SNP [dm6]	G	A	1.412e^-4	0.934	INTRON hppy
2R	20703659	2R_20703659_SNP [dm3] 2R_24816136_SNP [dm6]	G	T	1.415e^-4	0.934	INTRON Dll
X	9452743	X_9452743_SNP [dm3] X_9558710_SNP [dm6]	G	A	1.415e^-4	0.934	UTR_3_PRIME Cubn UPSTREAM CR42767
3L	13086325	3L_13086325_SNP [dm3] 3L_13093225_SNP [dm6]	T	A	1.422e^-4	0.934	INTERGENIC
X	3054955	X_3054955_SNP [dm3] X_3160922_SNP [dm6]	C	T	1.426e^-4	0.934	INTRON N	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20616819	3R_20616819_SNP [dm3] 3R_24791097_SNP [dm6]	T	C	1.431e^-4	0.934	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20936234	3R_20936234_SNP [dm3] 3R_25110512_SNP [dm6]	G	A	1.432e^-4	0.934	SYNONYMOUS_CODING CG13650
2L	10475232	2L_10475232_DEL [dm3] 2L_10475232_DEL [dm6]	AATTCTATAGGA...	A	1.437e^-4	0.934	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9540144	3R_9540144_SNP [dm3] 3R_13714422_SNP [dm6]	G	C	1.439e^-4	0.934	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18651598	2R_18651598_SNP [dm3] 2R_22764093_SNP [dm6]	C	T	1.450e^-4	0.934	INTRON CG42260 & 1 other
3L	8447034	3L_8447034_SNP [dm3] 3L_8453934_SNP [dm6]	A	T	1.450e^-4	0.934	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13765267	3R_13765267_SNP [dm3] 3R_17939545_SNP [dm6]	T	G	1.451e^-4	0.934	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13765300	3R_13765300_SNP [dm3] 3R_17939578_SNP [dm6]	T	C	1.451e^-4	0.934	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13483974	2L_13483974_SNP [dm3] 2L_13483974_SNP [dm6]	T	C	1.453e^-4	0.934	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_cad
3L	7226520	3L_7226520_SNP [dm3] 3L_7233420_SNP [dm6]	T	C	1.458e^-4	0.934	INTERGENIC
X	2055094	X_2055094_SNP [dm3] X_2161061_SNP [dm6]	G	T	1.459e^-4	0.934	UPSTREAM Cyp4d1 INTRON Cyp4d1	TF binding site mE1_TFBS_chinmo
2L	1834065	2L_1834065_SNP [dm3] 2L_1834065_SNP [dm6]	C	T	1.461e^-4	0.934	INTERGENIC
2L	16643458	2L_16643458_SNP [dm3] 2L_16643458_SNP [dm6]	A	G	1.466e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5623892	2L_5623892_SNP [dm3] 2L_5623892_SNP [dm6]	G	T	1.469e^-4	0.934	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8735809	2R_8735809_SNP [dm3] 2R_12848304_SNP [dm6]	A	G	1.470e^-4	0.934	SYNONYMOUS_CODING CG30486 UPSTREAM antr EXON CR45468
3R	14781458	3R_14781458_SNP [dm3] 3R_18955736_SNP [dm6]	A	T	1.470e^-4	0.934	INTRON CG42613 & 1 other
2L	4325090	2L_4325090_SNP [dm3] 2L_4325090_SNP [dm6]	C	T	1.475e^-4	0.934	SYNONYMOUS_CODING CG16857
3R	23661213	3R_23661213_SNP [dm3] 3R_27835491_SNP [dm6]	G	A	1.476e^-4	0.934	INTRON CG34353
2L	7017489	2L_7017489_SNP [dm3] 2L_7017489_SNP [dm6]	G	A	1.491e^-4	0.934	SPLICE_SITE_REGION ade3 DOWNSTREAM ade3 INTRON ade3	TF binding site mE1_TFBS_chinmo
2R	7083399	2R_7083399_SNP [dm3] 2R_11195894_SNP [dm6]	C	G	1.492e^-4	0.934	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_zfh1
2R	20477292	2R_20477292_SNP [dm3] 2R_24589769_SNP [dm6]	C	A	1.494e^-4	0.934	INTRON pio
3L	14494853	3L_14494853_SNP [dm3] 3L_14501753_SNP [dm6]	T	C	1.502e^-4	0.934	INTRON bbg	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	18223956	X_18223956_SNP [dm3] X_18329923_SNP [dm6]	T	C	1.506e^-4	0.934	INTRON CG6123
3R	27473460	3R_27473460_SNP [dm3] 3R_31647738_SNP [dm6]	C	G	1.518e^-4	0.934	INTRON kek6
X	2097884	X_2097884_SNP [dm3] X_2203851_SNP [dm6]	C	T	1.525e^-4	0.934	UTR_5_PRIME CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3R	15995339	3R_15995339_SNP [dm3] 3R_20169617_SNP [dm6]	T	G	1.537e^-4	0.934	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13836240	3L_13836240_SNP [dm3] 3L_13843140_SNP [dm6]	T	A	1.542e^-4	0.934	UPSTREAM CG8757 & 2 others INTERGENIC
2R	20703647	2R_20703647_SNP [dm3] 2R_24816124_SNP [dm6]	G	T	1.544e^-4	0.934	INTRON Dll
2L	2590623	2L_2590623_SNP [dm3] 2L_2590623_SNP [dm6]	G	A	1.548e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	20477223	2R_20477223_SNP [dm3] 2R_24589700_SNP [dm6]	A	G	1.549e^-4	0.934	INTRON pio
2L	2548049	2L_2548049_SNP [dm3] 2L_2548049_SNP [dm6]	A	T	1.554e^-4	0.934	INTERGENIC
2L	16011277	2L_16011277_SNP [dm3] 2L_16011277_SNP [dm6]	T	G	1.558e^-4	0.934	INTRON beat-Ic
3R	12444968	3R_12444968_SNP [dm3] 3R_16619246_SNP [dm6]	C	T	1.568e^-4	0.934	SYNONYMOUS_CODING CG17560 DOWNSTREAM mir-2494	TF binding site mE1_TFBS_sens
2R	8000574	2R_8000574_SNP [dm3] 2R_12113069_SNP [dm6]	T	G	1.578e^-4	0.934	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10828214	2R_10828214_SNP [dm3] 2R_14940709_SNP [dm6]	A	G	1.585e^-4	0.934	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
2L	9125503	2L_9125503_INS [dm3] 2L_9125503_INS [dm6]	A	AATTAA	1.586e^-4	0.934	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2L	9125534	2L_9125534_SNP [dm3] 2L_9125534_SNP [dm6]	C	T	1.588e^-4	0.934	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2R	4468742	2R_4468742_SNP [dm3] 2R_8581237_SNP [dm6]	A	G	1.591e^-4	0.934	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18651840	2R_18651840_SNP [dm3] 2R_22764335_SNP [dm6]	G	T	1.594e^-4	0.934	SYNONYMOUS_CODING CG13527 INTRON CG42260
2L	1662161	2L_1662161_DEL [dm3] 2L_1662161_DEL [dm6]	AT	A	1.595e^-4	0.934	INTRON chinmo	TF binding site BDTNP1_TFBS_twi
2R	4526611	2R_4526611_SNP [dm3] 2R_8639106_SNP [dm6]	C	T	1.595e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2590598	2L_2590598_SNP [dm3] 2L_2590598_SNP [dm6]	C	A	1.596e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7325154	2R_7325154_SNP [dm3] 2R_11437649_SNP [dm6]	A	T	1.598e^-4	0.934	INTRON CG7777
X	12362294	X_12362294_DEL [dm3] X_12468261_DEL [dm6]	GCCGGTGG	G	1.601e^-4	0.934	INTRON CG42258	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19121183	2L_19121183_SNP [dm3] 2L_19121183_SNP [dm6]	G	A	1.613e^-4	0.934	UPSTREAM Ddc DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
X	6853364	X_6853364_SNP [dm3] X_6959331_SNP [dm6]	T	A	1.627e^-4	0.934	INTRON CG14431 & 1 other
X	8739266	X_8739266_SNP [dm3] X_8845233_SNP [dm6]	A	C	1.629e^-4	0.934	INTRON CG12075
3L	6151439	3L_6151439_SNP [dm3] 3L_6158339_SNP [dm6]	G	C	1.661e^-4	0.934	SYNONYMOUS_CODING Cpr65Ay UPSTREAM CG13297
X	6679150	X_6679150_SNP [dm3] X_6785117_SNP [dm6]	T	A	1.682e^-4	0.934	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	26621119	3R_26621119_SNP [dm3] 3R_30795397_SNP [dm6]	G	A	1.685e^-4	0.934	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10035588	3R_10035588_SNP [dm3] 3R_14209866_SNP [dm6]	C	T	1.690e^-4	0.934	INTRON Dop1R1
3R	14776139	3R_14776139_SNP [dm3] 3R_18950417_SNP [dm6]	T	G	1.690e^-4	0.934	UTR_5_PRIME CG42613 & 1 other INTRON CG42613
3R	14776140	3R_14776140_SNP [dm3] 3R_18950418_SNP [dm6]	G	T	1.690e^-4	0.934	START_GAINED CG42613 & 1 other UTR_5_PRIME CG42613 & 1 other INTRON CG42613
2L	3964457	2L_3964457_SNP [dm3] 2L_3964457_SNP [dm6]	C	T	1.692e^-4	0.934	INTRON fred
2L	8566197	2L_8566197_SNP [dm3] 2L_8566197_SNP [dm6]	C	T	1.715e^-4	0.934	INTRON Sema-1a
2L	21821816	2L_21821816_SNP [dm3] 2L_21821816_SNP [dm6]	A	C	1.715e^-4	0.934	EXON CR44786
3L	9655971	3L_9655971_SNP [dm3] 3L_9662871_SNP [dm6]	C	T	1.735e^-4	0.934	INTRON fry
2L	1082756	2L_1082756_SNP [dm3] 2L_1082756_SNP [dm6]	G	A	1.737e^-4	0.934	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
2R	6633379	2R_6633379_INS [dm3] 2R_10745874_INS [dm6]	A	ACA	1.741e^-4	0.934	INTRON CG33144
2R	8000570	2R_8000570_SNP [dm3] 2R_12113065_SNP [dm6]	C	G	1.744e^-4	0.934	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4707772	2L_4707772_SNP [dm3] 2L_4707772_SNP [dm6]	T	C	1.745e^-4	0.934	INTRON CG34351
2R	10925840	2R_10925840_SNP [dm3] 2R_15038335_SNP [dm6]	T	A	1.746e^-4	0.934	SYNONYMOUS_CODING hbs
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	1.750e^-4	0.934	DOWNSTREAM CG3517 INTRON CG31221
3R	11258886	3R_11258886_SNP [dm3] 3R_15433164_SNP [dm6]	A	T	1.755e^-4	0.934	INTRON CG6118
2L	20513733	2L_20513733_SNP [dm3] 2L_20513733_SNP [dm6]	C	T	1.760e^-4	0.934	UPSTREAM CR45702 INTERGENIC
X	6853354	X_6853354_SNP [dm3] X_6959321_SNP [dm6]	T	C	1.780e^-4	0.934	INTRON CG14431 & 1 other
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	1.781e^-4	0.934	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1661127	2L_1661127_SNP [dm3] 2L_1661127_SNP [dm6]	G	A	1.785e^-4	0.934	INTRON chinmo
3L	9296656	3L_9296656_SNP [dm3] 3L_9303556_SNP [dm6]	G	A	1.785e^-4	0.934	INTERGENIC
2L	17669958	2L_17669958_SNP [dm3] 2L_17669958_SNP [dm6]	A	C	1.787e^-4	0.934	INTRON CadN
2L	765316	2L_765316_SNP [dm3] 2L_765316_SNP [dm6]	G	C	1.787e^-4	0.934	INTERGENIC
X	22231318	X_22231318_SNP [dm3] X_22829482_SNP [dm6]	C	T	1.788e^-4	0.934	INTRON fog	TF binding site BDTNP1_TFBS_dl
3L	15391630	3L_15391630_SNP [dm3] 3L_15398530_SNP [dm6]	A	G	1.794e^-4	0.934	INTERGENIC
3L	13149561	3L_13149561_SNP [dm3] 3L_13156461_SNP [dm6]	A	T	1.796e^-4	0.934	INTERGENIC
3R	13967196	3R_13967196_SNP [dm3] 3R_18141474_SNP [dm6]	A	G	1.796e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25231308	3R_25231308_SNP [dm3] 3R_29405586_SNP [dm6]	A	T	1.801e^-4	0.934	INTRON Ptp99A
2R	2497638	2R_2497638_SNP [dm3] 2R_6610133_SNP [dm6]	G	T	1.806e^-4	0.934	UPSTREAM jing INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	518143	3R_518143_SNP [dm3] 3R_4692421_SNP [dm6]	A	T	1.812e^-4	0.934	INTRON CG43427
2L	3122616	2L_3122616_SNP [dm3] 2L_3122616_SNP [dm6]	T	C	1.820e^-4	0.934	INTRON toc
2L	604314	2L_604314_SNP [dm3] 2L_604314_SNP [dm6]	T	G	1.833e^-4	0.934	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
3L	3436164	3L_3436164_INS [dm3] 3L_3436164_INS [dm6]	C	CGTC	1.840e^-4	0.934	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
X	18989983	X_18989983_SNP [dm3] X_19095950_SNP [dm6]	A	G	1.858e^-4	0.934	INTERGENIC
3R	15995338	3R_15995338_SNP [dm3] 3R_20169616_SNP [dm6]	T	A	1.862e^-4	0.934	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12478268	3L_12478268_SNP [dm3] 3L_12485168_SNP [dm6]	A	G	1.865e^-4	0.934	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19705368	3R_19705368_SNP [dm3] 3R_23879646_SNP [dm6]	T	C	1.868e^-4	0.934	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3940223	3L_3940223_SNP [dm3] 3L_3940223_SNP [dm6]	C	G	1.875e^-4	0.934	UPSTREAM CR43916 & 1 other DOWNSTREAM CG10863 INTERGENIC
2L	1930815	2L_1930815_SNP [dm3] 2L_1930815_SNP [dm6]	C	G	1.884e^-4	0.934	INTRON CG7337
3L	1218602	3L_1218602_SNP [dm3] 3L_1218602_SNP [dm6]	T	C	1.904e^-4	0.934	SYNONYMOUS_CODING LysP INTRON mwh
2L	16056084	2L_16056084_SNP [dm3] 2L_16056084_SNP [dm6]	G	A	1.905e^-4	0.934	INTRON beat-Ia
X	6853397	X_6853397_SNP [dm3] X_6959364_SNP [dm6]	A	C	1.907e^-4	0.934	INTRON CG14431 & 1 other
2R	8097293	2R_8097293_SNP [dm3] 2R_12209788_SNP [dm6]	C	T	1.925e^-4	0.934	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_twi
3R	9801358	3R_9801358_SNP [dm3] 3R_13975636_SNP [dm6]	C	T	1.926e^-4	0.934	DOWNSTREAM CR43460 INTRON rdx	TF binding site mE1_TFBS_HSA
X	4079885	X_4079885_SNP [dm3] X_4185852_SNP [dm6]	A	G	1.929e^-4	0.934	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3383489	2L_3383489_INS [dm3] 2L_3383489_INS [dm6]	C	ACA	1.939e^-4	0.934	INTERGENIC
2L	16555963	2L_16555963_SNP [dm3] 2L_16555963_SNP [dm6]	A	T	1.939e^-4	0.934	INTRON CG42389
3L	603554	3L_603554_SNP [dm3] 3L_603554_SNP [dm6]	G	A	1.942e^-4	0.934	UTR_5_PRIME CG13893	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1218596	3L_1218596_SNP [dm3] 3L_1218596_SNP [dm6]	C	T	1.942e^-4	0.934	SYNONYMOUS_CODING LysP INTRON mwh
2L	2170242	2L_2170242_SNP [dm3] 2L_2170242_SNP [dm6]	A	T	1.957e^-4	0.934	INTRON aop	regulatory region REDfly_CRMs
2R	8100161	2R_8100161_SNP [dm3] 2R_12212656_SNP [dm6]	C	A	1.965e^-4	0.934	UPSTREAM Sr-CII INTERGENIC
2R	6634293	2R_6634293_SNP [dm3] 2R_10746788_SNP [dm6]	C	T	1.971e^-4	0.934	INTRON CG33144
3L	8536322	3L_8536322_DEL [dm3] 3L_8543222_DEL [dm6]	ATTA	A	1.974e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16523363	2L_16523363_SNP [dm3] 2L_16523363_SNP [dm6]	A	G	1.977e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25365623	3R_25365623_SNP [dm3] 3R_29539901_SNP [dm6]	G	A	1.981e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7325167	2R_7325167_SNP [dm3] 2R_11437662_SNP [dm6]	G	T	1.992e^-4	0.934	INTRON CG7777
3R	15820748	3R_15820748_SNP [dm3] 3R_19995026_SNP [dm6]	A	G	1.994e^-4	0.934	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1659702	2L_1659702_SNP [dm3] 2L_1659702_SNP [dm6]	C	T	1.995e^-4	0.934	INTRON chinmo
2R	8979439	2R_8979439_SNP [dm3] 2R_13091934_SNP [dm6]	G	A	2.004e^-4	0.934	INTERGENIC
2L	4953923	2L_4953923_SNP [dm3] 2L_4953923_SNP [dm6]	T	A	2.009e^-4	0.934	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
3R	9293015	3R_9293015_SNP [dm3] 3R_13467293_SNP [dm6]	C	A	2.013e^-4	0.934	INTERGENIC
2L	963082	2L_963082_SNP [dm3] 2L_963082_SNP [dm6]	A	C	2.016e^-4	0.934	INTERGENIC
3L	21379347	3L_21379347_SNP [dm3] 3L_21386247_SNP [dm6]	T	C	2.022e^-4	0.934	INTRON rgn
3L	11329859	3L_11329859_SNP [dm3] 3L_11336759_SNP [dm6]	G	T	2.026e^-4	0.934	INTERGENIC
3L	15023804	3L_15023804_SNP [dm3] 3L_15030704_SNP [dm6]	A	C	2.035e^-4	0.934	INTRON Sytbeta
2L	6532863	2L_6532863_SNP [dm3] 2L_6532863_SNP [dm6]	T	G	2.055e^-4	0.934	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16699277	2R_16699277_SNP [dm3] 2R_20811772_SNP [dm6]	C	T	2.060e^-4	0.934	INTERGENIC
2R	11743838	2R_11743838_SNP [dm3] 2R_15856333_SNP [dm6]	C	T	2.064e^-4	0.934	DOWNSTREAM tun INTRON CG12970
2L	8857543	2L_8857543_SNP [dm3] 2L_8857543_SNP [dm6]	G	T	2.066e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16523080	2L_16523080_SNP [dm3] 2L_16523080_SNP [dm6]	A	C	2.068e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3R	712768	3R_712768_SNP [dm3] 3R_4887046_SNP [dm6]	G	A	2.079e^-4	0.934	INTERGENIC
X	6727328	X_6727328_SNP [dm3] X_6833295_SNP [dm6]	T	A	2.081e^-4	0.934	UPSTREAM CG12796 INTRON nonC
X	4832700	X_4832700_SNP [dm3] X_4938667_SNP [dm6]	T	C	2.093e^-4	0.934	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4666631	3R_4666631_SNP [dm3] 3R_8840909_SNP [dm6]	C	T	2.097e^-4	0.934	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2420524	3L_2420524_SNP [dm3] 3L_2420524_SNP [dm6]	T	A	2.101e^-4	0.934	INTRON CG45186
X	10802432	X_10802432_SNP [dm3] X_10908399_SNP [dm6]	G	A	2.104e^-4	0.934	SYNONYMOUS_CODING CG43901
X	9869894	X_9869894_DEL [dm3] X_9975861_DEL [dm6]	GTGGTGGATAAG...	G	2.118e^-4	0.934	INTRON CG43386
2R	8637992	2R_8637992_SNP [dm3] 2R_12750487_SNP [dm6]	G	A	2.134e^-4	0.934	SYNONYMOUS_CODING CG42663 DOWNSTREAM mos	TF binding site mE1_TFBS_cad
2L	14733085	2L_14733085_SNP [dm3] 2L_14733085_SNP [dm6]	C	A	2.138e^-4	0.934	UPSTREAM CR44857 INTERGENIC
X	4072918	X_4072918_SNP [dm3] X_4178885_SNP [dm6]	T	C	2.145e^-4	0.934	INTRON Fas2	TF binding site mE1_TFBS_HSA
3L	8709383	3L_8709383_SNP [dm3] 3L_8716283_SNP [dm6]	T	A	2.150e^-4	0.934	INTERGENIC
3L	8709385	3L_8709385_SNP [dm3] 3L_8716285_SNP [dm6]	T	A	2.150e^-4	0.934	INTERGENIC
2R	6628596	2R_6628596_SNP [dm3] 2R_10741091_SNP [dm6]	A	G	2.151e^-4	0.934	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	18199304	2L_18199304_SNP [dm3] 2L_18199304_SNP [dm6]	C	A	2.153e^-4	0.934	INTRON CG42750
2R	3917086	2R_3917086_SNP [dm3] 2R_8029581_SNP [dm6]	A	C	2.160e^-4	0.934	UPSTREAM CR43724 EXON CR43724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12735905	3L_12735905_SNP [dm3] 3L_12742805_SNP [dm6]	G	A	2.162e^-4	0.934	INTRON CG32112
3R	9829760	3R_9829760_SNP [dm3] 3R_14004038_SNP [dm6]	G	A	2.167e^-4	0.934	INTRON rdx
2L	908147	2L_908147_SNP [dm3] 2L_908147_SNP [dm6]	T	C	2.169e^-4	0.934	INTERGENIC
3R	25369748	3R_25369748_INS [dm3] 3R_29544026_INS [dm6]	G	GA	2.184e^-4	0.934	INTERGENIC
2R	7728293	2R_7728293_SNP [dm3] 2R_11840788_SNP [dm6]	T	G	2.186e^-4	0.934	UPSTREAM Sobp & 1 other INTERGENIC
2L	16644018	2L_16644018_SNP [dm3] 2L_16644018_SNP [dm6]	G	C	2.187e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7521193	3L_7521193_SNP [dm3] 3L_7528093_SNP [dm6]	A	G	2.188e^-4	0.934	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20513722	2L_20513722_SNP [dm3] 2L_20513722_SNP [dm6]	G	A	2.195e^-4	0.934	UPSTREAM CR45702 INTERGENIC
3L	320725	3L_320725_SNP [dm3] 3L_320725_SNP [dm6]	G	C	2.195e^-4	0.934	UPSTREAM fwd DOWNSTREAM CG32344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	10405141	X_10405141_SNP [dm3] X_10511108_SNP [dm6]	T	C	2.199e^-4	0.934	INTRON spri	insulator Insulator_Class_II.mE01
3R	7871965	3R_7871965_SNP [dm3] 3R_12046243_SNP [dm6]	C	T	2.201e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16741626	3L_16741626_SNP [dm3] 3L_16748526_SNP [dm6]	C	T	2.204e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_cad
X	8044334	X_8044334_SNP [dm3] X_8150301_SNP [dm6]	A	G	2.207e^-4	0.934	UTR_3_PRIME CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8044343	X_8044343_SNP [dm3] X_8150310_SNP [dm6]	G	A	2.207e^-4	0.934	UTR_3_PRIME CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad
2L	12719053	2L_12719053_SNP [dm3] 2L_12719053_SNP [dm6]	C	T	2.218e^-4	0.934	UTR_5_PRIME MRP INTRON CG5792	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	2794630	2R_2794630_SNP [dm3] 2R_6907125_SNP [dm6]	C	A	2.223e^-4	0.934	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2R	13227110	2R_13227110_SNP [dm3] 2R_17339605_SNP [dm6]	G	T	2.224e^-4	0.934	INTRON mbl
2L	4129004	2L_4129004_SNP [dm3] 2L_4129004_SNP [dm6]	G	A	2.230e^-4	0.934	INTERGENIC
3L	18822288	3L_18822288_SNP [dm3] 3L_18829188_SNP [dm6]	G	A	2.241e^-4	0.934	UTR_3_PRIME Indy DOWNSTREAM Cat	TF binding site mE1_TFBS_cad
2L	13055346	2L_13055346_SNP [dm3] 2L_13055346_SNP [dm6]	T	A	2.244e^-4	0.934	INTRON CG9932
2R	8917144	2R_8917144_SNP [dm3] 2R_13029639_SNP [dm6]	T	A	2.248e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20607899	2L_20607899_SNP [dm3] 2L_20607899_SNP [dm6]	C	T	2.260e^-4	0.934	UPSTREAM CR43608 INTRON CR44909
2L	13055356	2L_13055356_SNP [dm3] 2L_13055356_SNP [dm6]	A	G	2.263e^-4	0.934	INTRON CG9932
2L	10485110	2L_10485110_SNP [dm3] 2L_10485110_SNP [dm6]	C	T	2.264e^-4	0.934	NON_SYNONYMOUS_CODING Grip75 DOWNSTREAM CG7456	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19763548	2L_19763548_SNP [dm3] 2L_19763548_SNP [dm6]	T	A	2.277e^-4	0.934	INTRON fbp
X	13195412	X_13195412_SNP [dm3] X_13301379_SNP [dm6]	G	A	2.288e^-4	0.934	INTRON CG1764
3R	21402640	3R_21402640_SNP [dm3] 3R_25576918_SNP [dm6]	G	C	2.294e^-4	0.934	INTRON msi
3L	2598076	3L_2598076_SNP [dm3] 3L_2598076_SNP [dm6]	A	T	2.295e^-4	0.934	SYNONYMOUS_CODING CG12182	TF binding site mE1_TFBS_sens
3L	18496918	3L_18496918_SNP [dm3] 3L_18503818_SNP [dm6]	A	G	2.310e^-4	0.934	INTERGENIC
2L	2645841	2L_2645841_SNP [dm3] 2L_2645841_SNP [dm6]	T	A	2.314e^-4	0.934	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2L	1672779	2L_1672779_SNP [dm3] 2L_1672779_SNP [dm6]	T	G	2.314e^-4	0.934	INTRON chinmo
2R	14887725	2R_14887725_SNP [dm3] 2R_19000220_SNP [dm6]	A	G	2.315e^-4	0.934	INTRON tn
X	8044368	X_8044368_SNP [dm3] X_8150335_SNP [dm6]	A	G	2.323e^-4	0.934	UTR_3_PRIME CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad
3L	18856992	3L_18856992_SNP [dm3] 3L_18863892_SNP [dm6]	T	G	2.344e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
3L	20935098	3L_20935098_SNP [dm3] 3L_20941998_SNP [dm6]	T	C	2.349e^-4	0.934	INTRON fng
X	3759973	X_3759973_SNP [dm3] X_3865940_SNP [dm6]	A	G	2.352e^-4	0.934	INTRON yin
2L	8566415	2L_8566415_SNP [dm3] 2L_8566415_SNP [dm6]	G	A	2.354e^-4	0.934	INTRON Sema-1a
3L	19318673	3L_19318673_SNP [dm3] 3L_19325573_SNP [dm6]	T	C	2.363e^-4	0.934	INTRON pip
3R	9270736	3R_9270736_SNP [dm3] 3R_13445014_SNP [dm6]	A	G	2.366e^-4	0.934	UPSTREAM CR45679 INTERGENIC
X	20426944	X_20426944_SNP [dm3] X_20555917_SNP [dm6]	T	G	2.366e^-4	0.934	INTRON RunxB
2L	16884090	2L_16884090_SNP [dm3] 2L_16884090_SNP [dm6]	G	A	2.366e^-4	0.934	INTRON CG31743 & 1 other
2L	1660370	2L_1660370_SNP [dm3] 2L_1660370_SNP [dm6]	C	G	2.371e^-4	0.934	INTRON chinmo
2R	7056063	2R_7056063_SNP [dm3] 2R_11168558_SNP [dm6]	T	C	2.381e^-4	0.934	INTRON shn & 1 other
3L	6500732	3L_6500732_SNP [dm3] 3L_6507632_SNP [dm6]	T	G	2.382e^-4	0.934	INTRON sfl
3R	26053027	3R_26053027_SNP [dm3] 3R_30227305_SNP [dm6]	G	C	2.387e^-4	0.934	INTERGENIC
2L	6595320	2L_6595320_SNP [dm3] 2L_6595320_SNP [dm6]	G	A	2.388e^-4	0.934	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3968611	2R_3968611_SNP [dm3] 2R_8081106_SNP [dm6]	A	G	2.396e^-4	0.934	SYNONYMOUS_CODING slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12817438	2L_12817438_SNP [dm3] 2L_12817438_SNP [dm6]	T	A	2.396e^-4	0.934	UTR_3_PRIME kek1
3L	13836264	3L_13836264_SNP [dm3] 3L_13843164_SNP [dm6]	C	G	2.396e^-4	0.934	UPSTREAM CG8757 & 2 others INTERGENIC
2L	10107214	2L_10107214_SNP [dm3] 2L_10107214_SNP [dm6]	T	A	2.405e^-4	0.934	INTRON CG44153 & 1 other
2L	16643293	2L_16643293_SNP [dm3] 2L_16643293_SNP [dm6]	G	C	2.410e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17526583	2R_17526583_SNP [dm3] 2R_21639078_SNP [dm6]	A	C	2.410e^-4	0.934	DOWNSTREAM CG10321 INTERGENIC
3L	19939613	3L_19939613_SNP [dm3] 3L_19946513_SNP [dm6]	T	C	2.419e^-4	0.934	INTRON Ac76E
2L	1026805	2L_1026805_SNP [dm3] 2L_1026805_SNP [dm6]	A	T	2.422e^-4	0.934	UTR_5_PRIME CG4375 INTRON IA-2
2L	22004961	2L_22004961_SNP [dm3] 2L_22004961_SNP [dm6]	A	T	2.426e^-4	0.934	INTERGENIC	transposable element FlyBase
X	4072934	X_4072934_SNP [dm3] X_4178901_SNP [dm6]	G	C	2.426e^-4	0.934	INTRON Fas2	TF binding site mE1_TFBS_HSA
2R	20703684	2R_20703684_SNP [dm3] 2R_24816161_SNP [dm6]	A	G	2.427e^-4	0.934	INTRON Dll
2L	6740465	2L_6740465_SNP [dm3] 2L_6740465_SNP [dm6]	A	T	2.428e^-4	0.934	UPSTREAM TTLL3A INTERGENIC	TF binding site mE1_TFBS_cad
2L	19759528	2L_19759528_SNP [dm3] 2L_19759528_SNP [dm6]	C	A	2.434e^-4	0.934	UPSTREAM CG10628 INTRON CG10463	TF binding site mE1_TFBS_sens
3R	18016236	3R_18016236_SNP [dm3] 3R_22190514_SNP [dm6]	A	G	2.437e^-4	0.934	INTRON SKIP
2L	9861930	2L_9861930_SNP [dm3] 2L_9861930_SNP [dm6]	A	G	2.438e^-4	0.934	INTRON nAChRalpha6
X	13350720	X_13350720_SNP [dm3] X_13456687_SNP [dm6]	G	A	2.449e^-4	0.934	UTR_3_PRIME CG34324 INTRON Neto
2R	6546585	2R_6546585_SNP [dm3] 2R_10659080_SNP [dm6]	T	A	2.452e^-4	0.934	INTERGENIC
3R	4943382	3R_4943382_SNP [dm3] 3R_9117660_SNP [dm6]	G	C	2.454e^-4	0.934	INTRON pum
3L	8536011	3L_8536011_SNP [dm3] 3L_8542911_SNP [dm6]	G	A	2.467e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11690808	2R_11690808_SNP [dm3] 2R_15803303_SNP [dm6]	G	T	2.468e^-4	0.934	INTRON Zasp52 & 1 other
2R	6633151	2R_6633151_SNP [dm3] 2R_10745646_SNP [dm6]	G	A	2.470e^-4	0.934	INTRON CG33144
3R	26523504	3R_26523504_SNP [dm3] 3R_30697782_SNP [dm6]	G	A	2.476e^-4	0.934	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	787619	2L_787619_SNP [dm3] 2L_787619_SNP [dm6]	T	C	2.486e^-4	0.934	NON_SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5041712	X_5041712_SNP [dm3] X_5147679_SNP [dm6]	G	T	2.487e^-4	0.934	INTRON rg & 1 other
2L	16708545	2L_16708545_SNP [dm3] 2L_16708545_SNP [dm6]	C	T	2.498e^-4	0.934	INTRON CG31808
2L	4812154	2L_4812154_SNP [dm3] 2L_4812154_SNP [dm6]	C	A	2.503e^-4	0.934	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15330356	2R_15330356_SNP [dm3] 2R_19442851_SNP [dm6]	C	T	2.505e^-4	0.934	SYNONYMOUS_CODING RpL11 UPSTREAM snoRNA:Psi28S-2444 DOWNSTREAM Spt5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10212120	3L_10212120_SNP [dm3] 3L_10219020_SNP [dm6]	G	A	2.506e^-4	0.934	SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1651046	2L_1651046_SNP [dm3] 2L_1651046_SNP [dm6]	A	G	2.518e^-4	0.934	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6610944	2R_6610944_SNP [dm3] 2R_10723439_SNP [dm6]	T	A	2.520e^-4	0.934	UTR_3_PRIME Rab3	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	4942231	3L_4942231_SNP [dm3] 3L_4942231_SNP [dm6]	T	C	2.521e^-4	0.934	INTRON Con
2R	20723541	2R_20723541_SNP [dm3] 2R_24836018_SNP [dm6]	T	C	2.527e^-4	0.934	DOWNSTREAM Dll INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1598430	3L_1598430_SNP [dm3] 3L_1598430_SNP [dm6]	T	A	2.528e^-4	0.934	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1598438	3L_1598438_SNP [dm3] 3L_1598438_SNP [dm6]	A	T	2.528e^-4	0.934	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8351874	2L_8351874_SNP [dm3] 2L_8351874_SNP [dm6]	A	G	2.535e^-4	0.934	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2R	4213348	2R_4213348_SNP [dm3] 2R_8325843_SNP [dm6]	C	T	2.537e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6560996	2R_6560996_SNP [dm3] 2R_10673491_SNP [dm6]	G	A	2.548e^-4	0.934	UTR_5_PRIME stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
X	4832069	X_4832069_SNP [dm3] X_4938036_SNP [dm6]	G	T	2.550e^-4	0.934	UTR_5_PRIME CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5989291	3L_5989291_SNP [dm3] 3L_5996191_SNP [dm6]	G	T	2.566e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	2591502	2R_2591502_SNP [dm3] 2R_6703997_SNP [dm6]	G	A	2.571e^-4	0.934	NON_SYNONYMOUS_CODING CG3409 UTR_3_PRIME CG45092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21137599	3R_21137599_SNP [dm3] 3R_25311877_SNP [dm6]	T	C	2.571e^-4	0.934	SPLICE_SITE_REGION CG31087 UPSTREAM CG31099 INTRON CG31087
3L	3785938	3L_3785938_SNP [dm3] 3L_3785938_SNP [dm6]	T	A	2.573e^-4	0.934	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4261811	2L_4261811_SNP [dm3] 2L_4261811_SNP [dm6]	T	C	2.578e^-4	0.934	UPSTREAM CR44080 INTERGENIC
3R	9869267	3R_9869267_SNP [dm3] 3R_14043545_SNP [dm6]	C	A	2.607e^-4	0.934	DOWNSTREAM tRNA:S2b:88A INTERGENIC
2R	11404168	2R_11404168_SNP [dm3] 2R_15516663_SNP [dm6]	G	A	2.611e^-4	0.934	UTR_3_PRIME Khc-73
3L	13163321	3L_13163321_SNP [dm3] 3L_13170221_SNP [dm6]	C	T	2.612e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23816181	3R_23816181_SNP [dm3] 3R_27990459_SNP [dm6]	A	G	2.615e^-4	0.934	SYNONYMOUS_CODING CG4815
X	17277187	X_17277187_DEL [dm3] X_17383154_DEL [dm6]	GGG	A	2.621e^-4	0.934	INTERGENIC
2L	16134659	2L_16134659_SNP [dm3] 2L_16134659_SNP [dm6]	T	C	2.626e^-4	0.934	DOWNSTREAM CG34168 & 2 others INTERGENIC
2L	12169814	2L_12169814_SNP [dm3] 2L_12169814_SNP [dm6]	T	C	2.628e^-4	0.934	UTR_3_PRIME CG31760 UPSTREAM CG17217
3L	4388365	3L_4388365_SNP [dm3] 3L_4388365_SNP [dm6]	G	C	2.629e^-4	0.934	INTRON slow
2L	19754818	2L_19754818_SNP [dm3] 2L_19754818_SNP [dm6]	G	A	2.629e^-4	0.934	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8833974	2R_8833974_SNP [dm3] 2R_12946469_SNP [dm6]	T	C	2.649e^-4	0.934	UPSTREAM Mdr49 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13443916	3R_13443916_SNP [dm3] 3R_17618194_SNP [dm6]	G	T	2.651e^-4	0.934	UPSTREAM CG14326 & 1 other DOWNSTREAM CG14324 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4261806	2L_4261806_SNP [dm3] 2L_4261806_SNP [dm6]	T	C	2.656e^-4	0.934	UPSTREAM CR44080 INTERGENIC
3R	10550478	3R_10550478_SNP [dm3] 3R_14724756_SNP [dm6]	G	T	2.661e^-4	0.934	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2657970	2L_2657970_SNP [dm3] 2L_2657970_SNP [dm6]	G	A	2.665e^-4	0.934	DOWNSTREAM Prosbeta4R2 INTERGENIC
2L	13620469	2L_13620469_SNP [dm3] 2L_13620469_SNP [dm6]	G	A	2.668e^-4	0.934	INTRON kuz
2L	1194623	2L_1194623_SNP [dm3] 2L_1194623_SNP [dm6]	A	C	2.679e^-4	0.934	INTRON CG5001
2L	16644434	2L_16644434_SNP [dm3] 2L_16644434_SNP [dm6]	G	A	2.679e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	6497180	3L_6497180_SNP [dm3] 3L_6504080_SNP [dm6]	C	G	2.680e^-4	0.934	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	9836646	3L_9836646_SNP [dm3] 3L_9843546_SNP [dm6]	C	T	2.683e^-4	0.934	SPLICE_SITE_REGION RasGAP1 INTRON RasGAP1	TF binding site mE1_TFBS_HSA
2L	8566196	2L_8566196_SNP [dm3] 2L_8566196_SNP [dm6]	G	A	2.684e^-4	0.934	INTRON Sema-1a
2L	17962566	2L_17962566_DEL [dm3] 2L_17962566_DEL [dm6]	CCAAATGACAGC...	C	2.689e^-4	0.934	UPSTREAM CG5674 DOWNSTREAM btv INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_sbb
2L	1672781	2L_1672781_SNP [dm3] 2L_1672781_SNP [dm6]	C	T	2.702e^-4	0.934	INTRON chinmo
2L	4261913	2L_4261913_SNP [dm3] 2L_4261913_SNP [dm6]	C	G	2.704e^-4	0.934	UPSTREAM CR44080 INTERGENIC
X	1544072	X_1544072_SNP [dm3] X_1650039_SNP [dm6]	A	C	2.709e^-4	0.934	DOWNSTREAM br INTRON Mur2B & 1 other
3L	13429447	3L_13429447_SNP [dm3] 3L_13436347_SNP [dm6]	A	G	2.712e^-4	0.934	SYNONYMOUS_CODING CG10154
2R	17027611	2R_17027611_SNP [dm3] 2R_21140106_SNP [dm6]	A	G	2.713e^-4	0.934	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3960995	2L_3960995_SNP [dm3] 2L_3960995_SNP [dm6]	A	C	2.715e^-4	0.934	INTRON fred
2L	14124074	2L_14124074_SNP [dm3] 2L_14124074_SNP [dm6]	C	T	2.717e^-4	0.934	INTERGENIC
X	20444447	X_20444447_SNP [dm3] X_20573420_SNP [dm6]	A	T	2.725e^-4	0.934	UPSTREAM CG42580 INTERGENIC
2L	4726424	2L_4726424_SNP [dm3] 2L_4726424_SNP [dm6]	T	A	2.732e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1414431	2L_1414431_SNP [dm3] 2L_1414431_SNP [dm6]	T	A	2.734e^-4	0.934	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	16739952	2R_16739952_SNP [dm3] 2R_20852447_SNP [dm6]	A	G	2.737e^-4	0.934	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15249403	3R_15249403_SNP [dm3] 3R_19423681_SNP [dm6]	A	G	2.741e^-4	0.934	DOWNSTREAM CG3517 INTRON CG31221
3R	13707681	3R_13707681_INS [dm3] 3R_17881959_INS [dm6]	C	TA	2.748e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21961342	X_21961342_SNP [dm3] X_22559506_SNP [dm6]	T	C	2.750e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	4003024	2L_4003024_SNP [dm3] 2L_4003024_SNP [dm6]	A	G	2.751e^-4	0.934	INTERGENIC
2R	9444928	2R_9444928_SNP [dm3] 2R_13557423_SNP [dm6]	A	G	2.755e^-4	0.934	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14769654	3R_14769654_SNP [dm3] 3R_18943932_SNP [dm6]	C	T	2.756e^-4	0.934	INTRON CG42613
3R	14769656	3R_14769656_SNP [dm3] 3R_18943934_SNP [dm6]	C	T	2.756e^-4	0.934	INTRON CG42613
3R	26621104	3R_26621104_SNP [dm3] 3R_30795382_SNP [dm6]	T	A	2.772e^-4	0.934	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8536334	3L_8536334_SNP [dm3] 3L_8543234_SNP [dm6]	C	T	2.778e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23978374	3R_23978374_SNP [dm3] 3R_28152652_SNP [dm6]	A	T	2.781e^-4	0.934	INTRON CG34354
2R	7728115	2R_7728115_INS [dm3] 2R_11840610_INS [dm6]	G	GAAGTAG	2.786e^-4	0.934	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6634262	2R_6634262_SNP [dm3] 2R_10746757_SNP [dm6]	G	T	2.789e^-4	0.934	INTRON CG33144
3R	532128	3R_532128_SNP [dm3] 3R_4706406_SNP [dm6]	C	G	2.789e^-4	0.934	INTRON CG43427	TF binding site mE1_TFBS_HSA
2L	9177084	2L_9177084_SNP [dm3] 2L_9177084_SNP [dm6]	C	A	2.792e^-4	0.934	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	14767424	3R_14767424_SNP [dm3] 3R_18941702_SNP [dm6]	G	T	2.802e^-4	0.934	INTRON CG42613
2R	4213346	2R_4213346_SNP [dm3] 2R_8325841_SNP [dm6]	C	A	2.804e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12845333	2L_12845333_SNP [dm3] 2L_12845333_SNP [dm6]	C	T	2.805e^-4	0.934	INTERGENIC
3L	18857203	3L_18857203_SNP [dm3] 3L_18864103_SNP [dm6]	C	T	2.816e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
3R	13707663	3R_13707663_MNP [dm3] 3R_17881941_MNP [dm6]	TTTGA	CCAAT	2.833e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5881693	2R_5881693_SNP [dm3] 2R_9994188_SNP [dm6]	T	A	2.838e^-4	0.934	UTR_3_PRIME Pka-R2 DOWNSTREAM TER94
2L	16644251	2L_16644251_SNP [dm3] 2L_16644251_SNP [dm6]	C	T	2.847e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	7194244	3L_7194244_SNP [dm3] 3L_7201144_SNP [dm6]	A	T	2.854e^-4	0.934	INTERGENIC
2R	16346716	2R_16346716_DEL [dm3] 2R_20459211_DEL [dm6]	GG	A	2.857e^-4	0.934	INTRON CG12484
3R	21142302	3R_21142302_SNP [dm3] 3R_25316580_SNP [dm6]	C	T	2.859e^-4	0.934	UTR_3_PRIME CG10553 UPSTREAM CG10559
2L	3383463	2L_3383463_INS [dm3] 2L_3383463_INS [dm6]	A	AAA	2.861e^-4	0.934	INTERGENIC
2L	3383596	2L_3383596_SNP [dm3] 2L_3383596_SNP [dm6]	C	T	2.861e^-4	0.934	INTERGENIC
2L	6979338	2L_6979338_SNP [dm3] 2L_6979338_SNP [dm6]	G	A	2.861e^-4	0.934	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18015977	3R_18015977_SNP [dm3] 3R_22190255_SNP [dm6]	T	A	2.865e^-4	0.934	INTRON SKIP
3L	14665712	3L_14665712_DEL [dm3] 3L_14672612_DEL [dm6]	GTATG	G	2.866e^-4	0.934	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8529159	3L_8529159_SNP [dm3] 3L_8536059_SNP [dm6]	G	A	2.871e^-4	0.934	SYNONYMOUS_CODING ergic53	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14583261	2R_14583261_SNP [dm3] 2R_18695756_SNP [dm6]	G	A	2.871e^-4	0.934	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl
X	3700376	X_3700376_SNP [dm3] X_3806343_SNP [dm6]	A	G	2.873e^-4	0.934	INTRON fd3F
X	5041742	X_5041742_SNP [dm3] X_5147709_SNP [dm6]	G	T	2.904e^-4	0.934	INTRON rg & 1 other
X	12406666	X_12406666_SNP [dm3] X_12512633_SNP [dm6]	A	T	2.905e^-4	0.934	INTRON CG2556
2R	18148725	2R_18148725_SNP [dm3] 2R_22261220_SNP [dm6]	A	C	2.913e^-4	0.934	INTRON dve
3R	726537	3R_726537_SNP [dm3] 3R_4900815_SNP [dm6]	T	C	2.921e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18992059	3L_18992059_SNP [dm3] 3L_18998959_SNP [dm6]	G	A	2.921e^-4	0.934	SYNONYMOUS_CODING CG3808 UPSTREAM CG18135
3R	13640058	3R_13640058_SNP [dm3] 3R_17814336_SNP [dm6]	A	G	2.927e^-4	0.934	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13886184	2L_13886184_SNP [dm3] 2L_13886184_SNP [dm6]	A	T	2.933e^-4	0.934	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13214994	X_13214994_INS [dm3] X_13320961_INS [dm6]	A	ATATC	2.933e^-4	0.934	UPSTREAM IP3K2 INTRON IP3K2
2L	21925200	2L_21925200_SNP [dm3] 2L_21925200_SNP [dm6]	A	G	2.935e^-4	0.934	INTERGENIC	transposable element FlyBase
2R	10828217	2R_10828217_SNP [dm3] 2R_14940712_SNP [dm6]	A	G	2.938e^-4	0.934	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
2L	15865336	2L_15865336_SNP [dm3] 2L_15865336_SNP [dm6]	T	G	2.946e^-4	0.934	NON_SYNONYMOUS_CODING CG42792
3L	7466643	3L_7466643_DEL [dm3] 3L_7473543_DEL [dm6]	GCA	G	2.967e^-4	0.934	INTERGENIC
3R	2747925	3R_2747925_SNP [dm3] 3R_6922203_SNP [dm6]	T	C	2.967e^-4	0.934	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7416558	2L_7416558_SNP [dm3] 2L_7416558_SNP [dm6]	T	A	2.975e^-4	0.934	INTRON chm
3R	12895616	3R_12895616_SNP [dm3] 3R_17069894_SNP [dm6]	A	T	2.976e^-4	0.934	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9730217	3L_9730217_SNP [dm3] 3L_9737117_SNP [dm6]	T	G	2.978e^-4	0.934	INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20703557	2R_20703557_SNP [dm3] 2R_24816034_SNP [dm6]	C	T	2.981e^-4	0.934	INTRON Dll
2R	13227085	2R_13227085_SNP [dm3] 2R_17339580_SNP [dm6]	C	T	2.983e^-4	0.934	INTRON mbl
X	13215031	X_13215031_INS [dm3] X_13320998_INS [dm6]	T	ATTATCTG	3.011e^-4	0.934	UPSTREAM IP3K2 INTRON IP3K2
3R	11326866	3R_11326866_SNP [dm3] 3R_15501144_SNP [dm6]	G	A	3.016e^-4	0.934	INTERGENIC
2L	20501306	2L_20501306_SNP [dm3] 2L_20501306_SNP [dm6]	A	C	3.020e^-4	0.934	INTERGENIC
X	18990065	X_18990065_SNP [dm3] X_19096032_SNP [dm6]	C	A	3.027e^-4	0.934	INTERGENIC
2R	6544371	2R_6544371_SNP [dm3] 2R_10656866_SNP [dm6]	A	T	3.032e^-4	0.934	EXON CR44452
2L	7231254	2L_7231254_SNP [dm3] 2L_7231254_SNP [dm6]	A	G	3.034e^-4	0.934	DOWNSTREAM CG43800 INTRON Ndae1
2L	7406946	2L_7406946_SNP [dm3] 2L_7406946_SNP [dm6]	T	A	3.036e^-4	0.934	INTRON CG5177
3L	9740795	3L_9740795_SNP [dm3] 3L_9747695_SNP [dm6]	C	A	3.039e^-4	0.934	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9740798	3L_9740798_SNP [dm3] 3L_9747698_SNP [dm6]	G	T	3.039e^-4	0.934	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8722778	2L_8722778_SNP [dm3] 2L_8722778_SNP [dm6]	T	G	3.040e^-4	0.934	INTRON raw
2L	3383597	2L_3383597_SNP [dm3] 2L_3383597_SNP [dm6]	A	T	3.049e^-4	0.934	INTERGENIC
2L	17116482	2L_17116482_INS [dm3] 2L_17116482_INS [dm6]	T	TATAGAT	3.053e^-4	0.934	INTERGENIC
2R	4526622	2R_4526622_SNP [dm3] 2R_8639117_SNP [dm6]	G	A	3.061e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15249409	3R_15249409_SNP [dm3] 3R_19423687_SNP [dm6]	T	C	3.063e^-4	0.934	DOWNSTREAM CG3517 INTRON CG31221
3L	10469558	3L_10469558_SNP [dm3] 3L_10476458_SNP [dm6]	G	T	3.065e^-4	0.934	INTERGENIC
3R	11268190	3R_11268190_SNP [dm3] 3R_15442468_SNP [dm6]	A	T	3.066e^-4	0.934	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F	regulatory region REDfly_CRMs
2L	17835306	2L_17835306_SNP [dm3] 2L_17835306_SNP [dm6]	C	A	3.079e^-4	0.934	INTRON CadN2
3R	23292233	3R_23292233_SNP [dm3] 3R_27466511_SNP [dm6]	A	T	3.085e^-4	0.934	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_inv
2L	2200542	2L_2200542_SNP [dm3] 2L_2200542_SNP [dm6]	G	C	3.091e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7242289	2L_7242289_SNP [dm3] 2L_7242289_SNP [dm6]	T	C	3.093e^-4	0.934	INTRON Ndae1
X	11903950	X_11903950_SNP [dm3] X_12009917_SNP [dm6]	C	T	3.094e^-4	0.934	DOWNSTREAM CG1492 & 1 other INTERGENIC
3R	505477	3R_505477_SNP [dm3] 3R_4679755_SNP [dm6]	C	G	3.103e^-4	0.934	INTRON CG43427	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	12362201	X_12362201_SNP [dm3] X_12468168_SNP [dm6]	C	T	3.114e^-4	0.934	INTRON CG42258	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16521702	2L_16521702_SNP [dm3] 2L_16521702_SNP [dm6]	A	T	3.115e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20476843	2R_20476843_SNP [dm3] 2R_24589320_SNP [dm6]	A	G	3.121e^-4	0.934	INTRON pio	TF binding site mE1_TFBS_chinmo
2L	12169015	2L_12169015_SNP [dm3] 2L_12169015_SNP [dm6]	G	A	3.130e^-4	0.934	SYNONYMOUS_CODING CG31760 UTR_3_PRIME CG31760
2R	7734546	2R_7734546_SNP [dm3] 2R_11847041_SNP [dm6]	C	T	3.131e^-4	0.934	INTRON Sln
3R	18387337	3R_18387337_SNP [dm3] 3R_22561615_SNP [dm6]	G	A	3.153e^-4	0.934	INTRON CG5278
3L	14666476	3L_14666476_SNP [dm3] 3L_14673376_SNP [dm6]	C	T	3.153e^-4	0.934	UPSTREAM CG43121 & 1 other DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13766304	3R_13766304_SNP [dm3] 3R_17940582_SNP [dm6]	C	G	3.172e^-4	0.934	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10828204	2R_10828204_SNP [dm3] 2R_14940699_SNP [dm6]	G	A	3.172e^-4	0.934	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
3L	8412316	3L_8412316_SNP [dm3] 3L_8419216_SNP [dm6]	C	T	3.174e^-4	0.934	INTRON CG32354
3L	10719634	3L_10719634_SNP [dm3] 3L_10726534_SNP [dm6]	C	T	3.177e^-4	0.934	INTERGENIC
3R	21363153	3R_21363153_SNP [dm3] 3R_25537431_SNP [dm6]	C	T	3.180e^-4	0.934	INTRON msi
X	20336540	X_20336540_SNP [dm3] X_20465513_SNP [dm6]	C	T	3.181e^-4	0.934	SYNONYMOUS_CODING CG32506
3L	15391488	3L_15391488_SNP [dm3] 3L_15398388_SNP [dm6]	T	G	3.181e^-4	0.934	INTERGENIC
3R	13768032	3R_13768032_SNP [dm3] 3R_17942310_SNP [dm6]	A	T	3.186e^-4	0.934	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13396603	2R_13396603_SNP [dm3] 2R_17509098_SNP [dm6]	C	T	3.188e^-4	0.934	UTR_5_PRIME CG34193 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8214447	3L_8214447_SNP [dm3] 3L_8221347_SNP [dm6]	C	G	3.195e^-4	0.934	UPSTREAM CG13678 INTERGENIC
3R	23401798	3R_23401798_SNP [dm3] 3R_27576076_SNP [dm6]	G	A	3.202e^-4	0.934	INTRON wdb
3L	6151458	3L_6151458_SNP [dm3] 3L_6158358_SNP [dm6]	A	T	3.205e^-4	0.934	UPSTREAM CG13297 INTRON Cpr65Ay
2L	8738835	2L_8738835_SNP [dm3] 2L_8738835_SNP [dm6]	G	A	3.206e^-4	0.934	INTRON raw
2L	1721667	2L_1721667_INS [dm3] 2L_1721667_INS [dm6]	AA	TGT	3.216e^-4	0.934	INTRON Rim2
3R	10496971	3R_10496971_SNP [dm3] 3R_14671249_SNP [dm6]	A	T	3.257e^-4	0.934	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16197658	3R_16197658_SNP [dm3] 3R_20371936_SNP [dm6]	T	C	3.261e^-4	0.934	INTERGENIC
3L	2159287	3L_2159287_SNP [dm3] 3L_2159287_SNP [dm6]	T	C	3.262e^-4	0.934	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4239099	2L_4239099_SNP [dm3] 2L_4239099_SNP [dm6]	T	A	3.269e^-4	0.934	DOWNSTREAM CR45720 INTERGENIC
2R	18066280	2R_18066280_SNP [dm3] 2R_22178775_SNP [dm6]	A	G	3.277e^-4	0.934	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	3.288e^-4	0.934	INTERGENIC
2L	6595188	2L_6595188_SNP [dm3] 2L_6595188_SNP [dm6]	A	T	3.307e^-4	0.934	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21364668	3R_21364668_SNP [dm3] 3R_25538946_SNP [dm6]	G	A	3.308e^-4	0.934	INTRON msi
2L	15624013	2L_15624013_SNP [dm3] 2L_15624013_SNP [dm6]	C	T	3.318e^-4	0.934	UPSTREAM Or35a INTERGENIC
2L	9126843	2L_9126843_SNP [dm3] 2L_9126843_SNP [dm6]	G	A	3.324e^-4	0.934	UTR_5_PRIME CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	9379632	2L_9379632_SNP [dm3] 2L_9379632_SNP [dm6]	C	G	3.326e^-4	0.934	INTRON Shawl
3R	13652542	3R_13652542_SNP [dm3] 3R_17826820_SNP [dm6]	T	G	3.329e^-4	0.934	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25369746	3R_25369746_SNP [dm3] 3R_29544024_SNP [dm6]	A	T	3.337e^-4	0.934	INTERGENIC
2R	18651845	2R_18651845_SNP [dm3] 2R_22764340_SNP [dm6]	T	C	3.346e^-4	0.934	NON_SYNONYMOUS_CODING CG13527 INTRON CG42260
3L	6772662	3L_6772662_SNP [dm3] 3L_6779562_SNP [dm6]	G	A	3.350e^-4	0.934	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
X	9681467	X_9681467_DEL [dm3] X_9787434_DEL [dm6]	GACG	G	3.352e^-4	0.934	UPSTREAM CG32698 INTRON CG32698
3L	10211367	3L_10211367_SNP [dm3] 3L_10218267_SNP [dm6]	A	T	3.361e^-4	0.934	DOWNSTREAM CG32055 INTERGENIC
2R	3607919	2R_3607919_SNP [dm3] 2R_7720414_SNP [dm6]	T	C	3.361e^-4	0.934	INTRON CG18812
X	11567864	X_11567864_SNP [dm3] X_11673831_SNP [dm6]	C	T	3.375e^-4	0.934	SYNONYMOUS_CODING Ptp10D INTRON Ptp10D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11329885	3L_11329885_SNP [dm3] 3L_11336785_SNP [dm6]	A	G	3.377e^-4	0.934	INTERGENIC
2R	20120788	2R_20120788_SNP [dm3] 2R_24233265_SNP [dm6]	C	T	3.381e^-4	0.934	INTERGENIC
X	1505606	X_1505606_SNP [dm3] X_1611573_SNP [dm6]	A	C	3.385e^-4	0.934	UPSTREAM br INTRON br & 1 other
2L	3960910	2L_3960910_INS [dm3] 2L_3960910_INS [dm6]	G	GGGCAATTCTTAAAAATT...	3.388e^-4	0.934	INTRON fred
2L	3960916	2L_3960916_INS [dm3] 2L_3960916_INS [dm6]	C	CCAA	3.388e^-4	0.934	INTRON fred
2L	3960918	2L_3960918_INS [dm3] 2L_3960918_INS [dm6]	T	TGAAAGC	3.388e^-4	0.934	INTRON fred
2L	3960922	2L_3960922_SNP [dm3] 2L_3960922_SNP [dm6]	C	A	3.388e^-4	0.934	INTRON fred
2L	13621994	2L_13621994_SNP [dm3] 2L_13621994_SNP [dm6]	C	T	3.392e^-4	0.934	INTRON kuz
2L	1659713	2L_1659713_SNP [dm3] 2L_1659713_SNP [dm6]	T	G	3.393e^-4	0.934	INTRON chinmo
3R	7393794	3R_7393794_SNP [dm3] 3R_11568072_SNP [dm6]	G	T	3.401e^-4	0.934	INTERGENIC
2R	16265436	2R_16265436_SNP [dm3] 2R_20377931_SNP [dm6]	C	T	3.408e^-4	0.934	INTERGENIC
3L	9977069	3L_9977069_SNP [dm3] 3L_9983969_SNP [dm6]	A	T	3.415e^-4	0.934	INTRON dpr6
2R	7728152	2R_7728152_SNP [dm3] 2R_11840647_SNP [dm6]	A	T	3.415e^-4	0.934	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20476755	2R_20476755_SNP [dm3] 2R_24589232_SNP [dm6]	T	G	3.434e^-4	0.934	INTRON pio	TF binding site mE1_TFBS_chinmo
2L	16521949	2L_16521949_SNP [dm3] 2L_16521949_SNP [dm6]	T	A	3.434e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10556165	2L_10556165_SNP [dm3] 2L_10556165_SNP [dm6]	G	T	3.440e^-4	0.934	INTRON Trim9	TF binding site BDTNP1_TFBS_da
3L	7814305	3L_7814305_SNP [dm3] 3L_7821205_SNP [dm6]	C	A	3.444e^-4	0.934	INTRON Pdp1	TF binding site mE1_TFBS_Trl
2L	3383607	2L_3383607_SNP [dm3] 2L_3383607_SNP [dm6]	A	G	3.453e^-4	0.934	INTERGENIC
3R	21498361	3R_21498361_INS [dm3] 3R_25672639_INS [dm6]	T	TATATCAATGGCATAT...	3.455e^-4	0.934	INTRON Lgr3
3R	544346	3R_544346_SNP [dm3] 3R_4718624_SNP [dm6]	A	G	3.458e^-4	0.934	DOWNSTREAM Nep2 EXON CR44923	transposable element FlyBase
2R	18363750	2R_18363750_SNP [dm3] 2R_22476245_SNP [dm6]	G	A	3.458e^-4	0.934	UTR_5_PRIME CG45062 DOWNSTREAM CG45063
2L	3388425	2L_3388425_INS [dm3] 2L_3388425_INS [dm6]	T	TTGT	3.461e^-4	0.934	UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
3L	7390825	3L_7390825_SNP [dm3] 3L_7397725_SNP [dm6]	T	A	3.461e^-4	0.934	UPSTREAM CG8562 INTRON CG32379
2L	14924542	2L_14924542_DEL [dm3] 2L_14924542_DEL [dm6]	TGCCCT	T	3.475e^-4	0.934	UPSTREAM CG3491 INTRON CG42313
2R	2602411	2R_2602411_SNP [dm3] 2R_6714906_SNP [dm6]	G	A	3.476e^-4	0.934	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19474735	3R_19474735_SNP [dm3] 3R_23649013_SNP [dm6]	C	G	3.480e^-4	0.934	INTRON CG31145
X	16682899	X_16682899_SNP [dm3] X_16788866_SNP [dm6]	G	T	3.490e^-4	0.934	UTR_3_PRIME Sap30 DOWNSTREAM Rrp45	TF binding site BDTNP1_TFBS_dl
2L	12078825	2L_12078825_SNP [dm3] 2L_12078825_SNP [dm6]	C	T	3.493e^-4	0.934	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	17215905	2R_17215905_SNP [dm3] 2R_21328400_SNP [dm6]	C	G	3.512e^-4	0.934	DOWNSTREAM snoRNA:Me28S-A2589b INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10572586	2R_10572586_DEL [dm3] 2R_14685081_DEL [dm6]	ATAA	A	3.514e^-4	0.934	INTRON mspo
2L	22008127	2L_22008127_SNP [dm3] 2L_22008127_SNP [dm6]	A	T	3.514e^-4	0.934	INTERGENIC
X	8043161	X_8043161_SNP [dm3] X_8149128_SNP [dm6]	C	G	3.519e^-4	0.934	SYNONYMOUS_CODING CG10959 DOWNSTREAM CG15336	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10317779	2R_10317779_DEL [dm3] 2R_14430274_DEL [dm6]	TA	T	3.528e^-4	0.934	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19548350	3L_19548350_SNP [dm3] 3L_19555250_SNP [dm6]	C	G	3.538e^-4	0.934	DOWNSTREAM CR44677 & 1 other INTERGENIC
2R	17475818	2R_17475818_SNP [dm3] 2R_21588313_SNP [dm6]	G	A	3.550e^-4	0.934	INTERGENIC
2R	15435495	2R_15435495_SNP [dm3] 2R_19547990_SNP [dm6]	A	G	3.565e^-4	0.934	UPSTREAM sm INTRON sm
3R	1473154	3R_1473154_SNP [dm3] 3R_5647432_SNP [dm6]	G	A	3.566e^-4	0.934	START_GAINED MTA1-like UTR_5_PRIME MTA1-like INTRON MTA1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	16523997	2L_16523997_SNP [dm3] 2L_16523997_SNP [dm6]	A	T	3.567e^-4	0.934	INTRON CG5953
2R	11743199	2R_11743199_SNP [dm3] 2R_15855694_SNP [dm6]	G	A	3.567e^-4	0.934	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
3R	1202288	3R_1202288_SNP [dm3] 3R_5376566_SNP [dm6]	A	C	3.572e^-4	0.934	UPSTREAM 7B2 DOWNSTREAM CG14667 INTERGENIC
3L	517333	3L_517333_SNP [dm3] 3L_517333_SNP [dm6]	A	G	3.575e^-4	0.934	INTRON klar
2L	16555490	2L_16555490_SNP [dm3] 2L_16555490_SNP [dm6]	A	G	3.578e^-4	0.934	INTRON CG42389
2R	15079360	2R_15079360_SNP [dm3] 2R_19191855_SNP [dm6]	A	T	3.594e^-4	0.934	INTRON hppy
X	4815548	X_4815548_SNP [dm3] X_4921515_SNP [dm6]	A	G	3.596e^-4	0.934	SYNONYMOUS_CODING CG6903 DOWNSTREAM CG44774	TF binding site mE1_TFBS_cad
2L	7406919	2L_7406919_SNP [dm3] 2L_7406919_SNP [dm6]	G	A	3.603e^-4	0.934	INTRON CG5177
3L	20775821	3L_20775821_SNP [dm3] 3L_20782721_SNP [dm6]	C	T	3.609e^-4	0.934	INTRON CG11399	TF binding site mE1_TFBS_cad
3L	1598178	3L_1598178_SNP [dm3] 3L_1598178_SNP [dm6]	T	A	3.619e^-4	0.934	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13621995	2L_13621995_SNP [dm3] 2L_13621995_SNP [dm6]	C	A	3.622e^-4	0.934	INTRON kuz
2L	20501337	2L_20501337_SNP [dm3] 2L_20501337_SNP [dm6]	C	G	3.624e^-4	0.934	INTERGENIC
2L	9125492	2L_9125492_SNP [dm3] 2L_9125492_SNP [dm6]	G	T	3.624e^-4	0.934	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	24097181	3R_24097181_SNP [dm3] 3R_28271459_SNP [dm6]	T	G	3.625e^-4	0.934	INTERGENIC
2R	7728342	2R_7728342_SNP [dm3] 2R_11840837_SNP [dm6]	G	C	3.629e^-4	0.934	UPSTREAM CG34229 INTERGENIC
3R	13765986	3R_13765986_SNP [dm3] 3R_17940264_SNP [dm6]	C	T	3.632e^-4	0.934	INTRON cpo
3L	18856981	3L_18856981_SNP [dm3] 3L_18863881_SNP [dm6]	G	A	3.632e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
3L	10211110	3L_10211110_SNP [dm3] 3L_10218010_SNP [dm6]	G	T	3.643e^-4	0.934	DOWNSTREAM CG32055 INTERGENIC
3L	14640578	3L_14640578_SNP [dm3] 3L_14647478_SNP [dm6]	C	T	3.645e^-4	0.934	INTRON dlp
3R	26534360	3R_26534360_SNP [dm3] 3R_30708638_SNP [dm6]	C	A	3.653e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15746722	3L_15746722_SNP [dm3] 3L_15753622_SNP [dm6]	C	T	3.664e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15938787	2R_15938787_SNP [dm3] 2R_20051282_SNP [dm6]	A	G	3.670e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13765484	3R_13765484_SNP [dm3] 3R_17939762_SNP [dm6]	C	G	3.691e^-4	0.934	INTRON cpo	TF binding site mE1_TFBS_sens
2L	16527312	2L_16527312_SNP [dm3] 2L_16527312_SNP [dm6]	T	C	3.692e^-4	0.934	INTRON CG5953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13967209	3R_13967209_SNP [dm3] 3R_18141487_SNP [dm6]	A	G	3.696e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	109673	3R_109673_SNP [dm3] 3R_4283951_SNP [dm6]	G	C	3.702e^-4	0.934	INTRON cpx	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15182037	3L_15182037_SNP [dm3] 3L_15188937_SNP [dm6]	G	C	3.703e^-4	0.934	INTERGENIC
2L	19754693	2L_19754693_SNP [dm3] 2L_19754693_SNP [dm6]	A	G	3.704e^-4	0.934	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1659715	2L_1659715_SNP [dm3] 2L_1659715_SNP [dm6]	A	G	3.705e^-4	0.934	INTRON chinmo
2L	10107230	2L_10107230_DEL [dm3] 2L_10107230_DEL [dm6]	ACAAATA	A	3.707e^-4	0.934	INTRON CG44153 & 1 other
2L	19754719	2L_19754719_SNP [dm3] 2L_19754719_SNP [dm6]	T	C	3.709e^-4	0.934	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10059179	2L_10059179_SNP [dm3] 2L_10059179_SNP [dm6]	C	T	3.710e^-4	0.934	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17529666	2R_17529666_SNP [dm3] 2R_21642161_SNP [dm6]	G	C	3.718e^-4	0.934	INTERGENIC
3L	14665450	3L_14665450_SNP [dm3] 3L_14672350_SNP [dm6]	G	C	3.720e^-4	0.934	SYNONYMOUS_CODING CG43121 UPSTREAM ome DOWNSTREAM dlp	TF binding site mE1_TFBS_bab1
2R	10253805	2R_10253805_SNP [dm3] 2R_14366300_SNP [dm6]	A	G	3.729e^-4	0.934	NON_SYNONYMOUS_CODING CG34184 UPSTREAM CG34442 DOWNSTREAM Tfb1
2R	8441250	2R_8441250_SNP [dm3] 2R_12553745_SNP [dm6]	G	T	3.732e^-4	0.934	INTRON fra
2R	8120313	2R_8120313_SNP [dm3] 2R_12232808_SNP [dm6]	T	C	3.742e^-4	0.934	INTERGENIC
2R	11743845	2R_11743845_SNP [dm3] 2R_15856340_SNP [dm6]	C	T	3.744e^-4	0.934	DOWNSTREAM tun INTRON CG12970
3R	1094608	3R_1094608_SNP [dm3] 3R_5268886_SNP [dm6]	A	G	3.746e^-4	0.934	UTR_3_PRIME Hph UPSTREAM CR45033 DOWNSTREAM Hph INTRON Hph
2L	16011166	2L_16011166_SNP [dm3] 2L_16011166_SNP [dm6]	G	T	3.751e^-4	0.934	INTRON beat-Ic
3R	13706744	3R_13706744_SNP [dm3] 3R_17881022_SNP [dm6]	C	T	3.768e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_chinmo
2R	10514827	2R_10514827_SNP [dm3] 2R_14627322_SNP [dm6]	T	C	3.776e^-4	0.934	INTERGENIC
3L	18857068	3L_18857068_SNP [dm3] 3L_18863968_SNP [dm6]	A	G	3.807e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
2L	12041832	2L_12041832_SNP [dm3] 2L_12041832_SNP [dm6]	C	G	3.810e^-4	0.934	SYNONYMOUS_CODING CG6785
3R	11325673	3R_11325673_SNP [dm3] 3R_15499951_SNP [dm6]	T	G	3.810e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14156150	X_14156150_SNP [dm3] X_14262117_SNP [dm6]	T	G	3.819e^-4	0.934	INTRON CG1461
3L	8872036	3L_8872036_SNP [dm3] 3L_8878936_SNP [dm6]	G	C	3.823e^-4	0.934	INTRON dally	TF binding site mE1_TFBS_kn
2R	6342214	2R_6342214_SNP [dm3] 2R_10454709_SNP [dm6]	A	T	3.825e^-4	0.934	INTRON Galphao & 1 other
2L	16643273	2L_16643273_SNP [dm3] 2L_16643273_SNP [dm6]	C	G	3.830e^-4	0.934	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7434559	2L_7434559_SNP [dm3] 2L_7434559_SNP [dm6]	C	T	3.830e^-4	0.934	INTERGENIC
3L	2159289	3L_2159289_SNP [dm3] 3L_2159289_SNP [dm6]	T	C	3.835e^-4	0.934	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13707678	3R_13707678_SNP [dm3] 3R_17881956_SNP [dm6]	A	T	3.846e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7226521	3L_7226521_SNP [dm3] 3L_7233421_SNP [dm6]	G	T	3.871e^-4	0.934	INTERGENIC
2L	7235372	2L_7235372_SNP [dm3] 2L_7235372_SNP [dm6]	G	C	3.871e^-4	0.934	INTRON Ndae1
2L	3896633	2L_3896633_SNP [dm3] 2L_3896633_SNP [dm6]	G	A	3.876e^-4	0.934	UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_Trl
3L	1563491	3L_1563491_SNP [dm3] 3L_1563491_SNP [dm6]	T	C	3.885e^-4	0.934	INTRON CG7879
3R	25237025	3R_25237025_SNP [dm3] 3R_29411303_SNP [dm6]	T	C	3.886e^-4	0.934	INTRON Ptp99A
3L	17500008	3L_17500008_SNP [dm3] 3L_17506908_SNP [dm6]	T	A	3.889e^-4	0.934	INTRON Oatp74D
X	19575846	X_19575846_INS [dm3] X_19681813_INS [dm6]	C	CCC	3.892e^-4	0.934	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	6339167	3L_6339167_SNP [dm3] 3L_6346067_SNP [dm6]	T	G	3.903e^-4	0.934	INTRON CG13300
X	11744937	X_11744937_INS [dm3] X_11850904_INS [dm6]	T	TGT	3.904e^-4	0.934	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC	TF binding site mE1_TFBS_ttk
3L	6151484	3L_6151484_SNP [dm3] 3L_6158384_SNP [dm6]	A	G	3.914e^-4	0.934	INTRON Cpr65Ay
3R	26522981	3R_26522981_SNP [dm3] 3R_30697259_SNP [dm6]	A	C	3.923e^-4	0.934	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	3.925e^-4	0.934	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9296615	3L_9296615_SNP [dm3] 3L_9303515_SNP [dm6]	G	A	3.926e^-4	0.934	INTERGENIC
X	6854804	X_6854804_SNP [dm3] X_6960771_SNP [dm6]	T	C	3.931e^-4	0.934	INTRON CG14431 & 1 other
2R	20703394	2R_20703394_SNP [dm3] 2R_24815871_SNP [dm6]	A	G	3.933e^-4	0.934	INTRON Dll	TF binding site BDTNP1_TFBS_dl
2L	15842793	2L_15842793_SNP [dm3] 2L_15842793_SNP [dm6]	A	C	3.944e^-4	0.934	INTERGENIC
X	11654907	X_11654907_SNP [dm3] X_11760874_SNP [dm6]	A	G	3.951e^-4	0.934	INTRON m
X	6853312	X_6853312_DEL [dm3] X_6959279_DEL [dm6]	AA	A	3.956e^-4	0.934	INTRON CG14431 & 1 other
3L	15637148	3L_15637148_SNP [dm3] 3L_15644048_SNP [dm6]	C	T	3.962e^-4	0.934	INTRON comm3
X	16682817	X_16682817_SNP [dm3] X_16788784_SNP [dm6]	C	A	3.965e^-4	0.934	UTR_3_PRIME Sap30 DOWNSTREAM Rrp45	TF binding site BDTNP1_TFBS_dl
2L	9125539	2L_9125539_SNP [dm3] 2L_9125539_SNP [dm6]	C	T	3.976e^-4	0.934	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	727226	2L_727226_SNP [dm3] 2L_727226_SNP [dm6]	G	A	3.984e^-4	0.934	INTERGENIC
2L	727234	2L_727234_SNP [dm3] 2L_727234_SNP [dm6]	G	T	3.984e^-4	0.934	INTERGENIC
3R	13707488	3R_13707488_SNP [dm3] 3R_17881766_SNP [dm6]	A	T	3.996e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6151271	3L_6151271_SNP [dm3] 3L_6158171_SNP [dm6]	G	A	3.998e^-4	0.934	SYNONYMOUS_CODING Cpr65Ay UPSTREAM CG13297
2R	6333414	2R_6333414_SNP [dm3] 2R_10445909_SNP [dm6]	T	C	3.999e^-4	0.934	INTRON Galphao
2L	3033151	2L_3033151_SNP [dm3] 2L_3033151_SNP [dm6]	G	A	4.015e^-4	0.934	DOWNSTREAM GABPI INTRON CG17258
3L	12478304	3L_12478304_SNP [dm3] 3L_12485204_SNP [dm6]	G	C	4.019e^-4	0.934	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6151478	3L_6151478_SNP [dm3] 3L_6158378_SNP [dm6]	G	C	4.019e^-4	0.934	INTRON Cpr65Ay
2R	8995370	2R_8995370_SNP [dm3] 2R_13107865_SNP [dm6]	G	T	4.028e^-4	0.934	INTERGENIC
X	4833031	X_4833031_SNP [dm3] X_4938998_SNP [dm6]	T	G	4.028e^-4	0.934	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18871625	3R_18871625_SNP [dm3] 3R_23045903_SNP [dm6]	G	A	4.034e^-4	0.934	SYNONYMOUS_CODING CG17121
3L	7521242	3L_7521242_SNP [dm3] 3L_7528142_SNP [dm6]	C	T	4.038e^-4	0.934	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	12930253	3R_12930253_SNP [dm3] 3R_17104531_SNP [dm6]	T	C	4.041e^-4	0.934	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3936087	X_3936087_INS [dm3] X_4042054_INS [dm6]	C	CG	4.042e^-4	0.934	INTERGENIC
2L	9125619	2L_9125619_SNP [dm3] 2L_9125619_SNP [dm6]	T	C	4.054e^-4	0.934	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	21865818	2L_21865818_SNP [dm3] 2L_21865818_SNP [dm6]	A	G	4.060e^-4	0.934	INTRON CR44917 EXON CR44918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20501261	2L_20501261_SNP [dm3] 2L_20501261_SNP [dm6]	T	G	4.065e^-4	0.934	INTERGENIC
2L	15288191	2L_15288191_SNP [dm3] 2L_15288191_SNP [dm6]	G	T	4.069e^-4	0.934	INTERGENIC
2R	11743225	2R_11743225_SNP [dm3] 2R_15855720_SNP [dm6]	A	T	4.076e^-4	0.934	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
2L	7247687	2L_7247687_SNP [dm3] 2L_7247687_SNP [dm6]	T	A	4.081e^-4	0.934	INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17112006	2L_17112006_SNP [dm3] 2L_17112006_SNP [dm6]	A	G	4.082e^-4	0.934	INTERGENIC
3L	13081614	3L_13081614_SNP [dm3] 3L_13088514_SNP [dm6]	A	T	4.086e^-4	0.934	DOWNSTREAM CG11251 EXON CR45749	TF binding site BDTNP1_TFBS_prd
X	3760139	X_3760139_SNP [dm3] X_3866106_SNP [dm6]	C	T	4.090e^-4	0.934	INTRON yin
2L	9232105	2L_9232105_SNP [dm3] 2L_9232105_SNP [dm6]	C	T	4.104e^-4	0.934	INTRON tai
2R	10508575	2R_10508575_SNP [dm3] 2R_14621070_SNP [dm6]	G	A	4.105e^-4	0.934	SYNONYMOUS_CODING CG12863 UPSTREAM Uhg5 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14888182	2R_14888182_SNP [dm3] 2R_19000677_SNP [dm6]	A	T	4.108e^-4	0.934	INTRON tn
2R	14888186	2R_14888186_SNP [dm3] 2R_19000681_SNP [dm6]	A	G	4.108e^-4	0.934	INTRON tn
3R	12422882	3R_12422882_SNP [dm3] 3R_16597160_SNP [dm6]	T	A	4.108e^-4	0.934	UTR_3_PRIME CG14892 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16520593	2L_16520593_SNP [dm3] 2L_16520593_SNP [dm6]	G	T	4.113e^-4	0.934	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	4261906	2L_4261906_SNP [dm3] 2L_4261906_SNP [dm6]	C	T	4.114e^-4	0.934	UPSTREAM CR44080 INTERGENIC
3R	25501099	3R_25501099_SNP [dm3] 3R_29675377_SNP [dm6]	C	G	4.117e^-4	0.934	UTR_5_PRIME Bub3 UPSTREAM Cap-D2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	20538929	X_20538929_SNP [dm3] X_20667902_SNP [dm6]	G	A	4.129e^-4	0.934	UPSTREAM CG1835 INTRON CG1835	TF binding site BDTNP1_TFBS_dl
X	19775861	X_19775861_SNP [dm3] X_19881828_SNP [dm6]	C	A	4.130e^-4	0.934	INTRON Hers
2L	6979527	2L_6979527_SNP [dm3] 2L_6979527_SNP [dm6]	G	C	4.139e^-4	0.934	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19543765	3R_19543765_SNP [dm3] 3R_23718043_SNP [dm6]	A	T	4.141e^-4	0.934	UTR_5_PRIME nau	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	16555778	2L_16555778_SNP [dm3] 2L_16555778_SNP [dm6]	T	C	4.143e^-4	0.934	INTRON CG42389
3R	1546736	3R_1546736_SNP [dm3] 3R_5721014_SNP [dm6]	C	A	4.152e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7083127	2R_7083127_SNP [dm3] 2R_11195622_SNP [dm6]	A	G	4.166e^-4	0.934	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1672775	2L_1672775_SNP [dm3] 2L_1672775_SNP [dm6]	T	A	4.170e^-4	0.934	INTRON chinmo
2L	21258360	2L_21258360_SNP [dm3] 2L_21258360_SNP [dm6]	A	G	4.178e^-4	0.934	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl
3L	3785904	3L_3785904_SNP [dm3] 3L_3785904_SNP [dm6]	T	A	4.186e^-4	0.934	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16233812	2L_16233812_SNP [dm3] 2L_16233812_SNP [dm6]	C	A	4.198e^-4	0.934	INTRON CG42817	TF binding site BDTNP1_TFBS_dl
2L	5733044	2L_5733044_SNP [dm3] 2L_5733044_SNP [dm6]	C	A	4.201e^-4	0.934	DOWNSTREAM CG11147 INTRON CG11030
2L	19754185	2L_19754185_SNP [dm3] 2L_19754185_SNP [dm6]	T	A	4.202e^-4	0.934	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad
2L	19754329	2L_19754329_MNP [dm3] 2L_19754329_MNP [dm6]	GTA	AGT	4.202e^-4	0.934	INTRON CG10631	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10921406	2R_10921406_DEL [dm3] 2R_15033901_DEL [dm6]	GCTGGATGG	G	4.208e^-4	0.934	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9541491	2L_9541491_SNP [dm3] 2L_9541491_SNP [dm6]	G	T	4.213e^-4	0.934	SYNONYMOUS_CODING CG17855
2L	6656353	2L_6656353_SNP [dm3] 2L_6656353_SNP [dm6]	G	A	4.214e^-4	0.934	UPSTREAM CG31633 DOWNSTREAM CG31636 INTERGENIC
3L	17268022	3L_17268022_SNP [dm3] 3L_17274922_SNP [dm6]	A	C	4.221e^-4	0.934	DOWNSTREAM CR45436 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16702726	2R_16702726_SNP [dm3] 2R_20815221_SNP [dm6]	C	T	4.235e^-4	0.934	INTERGENIC
3L	18655666	3L_18655666_SNP [dm3] 3L_18662566_SNP [dm6]	C	T	4.239e^-4	0.934	INTRON MYPT-75D	TF binding site mE1_TFBS_cad
3R	23816170	3R_23816170_SNP [dm3] 3R_27990448_SNP [dm6]	A	C	4.245e^-4	0.934	NON_SYNONYMOUS_CODING CG4815
3R	13966918	3R_13966918_SNP [dm3] 3R_18141196_SNP [dm6]	G	C	4.249e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16710281	X_16710281_SNP [dm3] X_16816248_SNP [dm6]	A	C	4.256e^-4	0.934	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	6080833	2L_6080833_DEL [dm3] 2L_6080833_DEL [dm6]	TT	T	4.261e^-4	0.934	DOWNSTREAM CR44773 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6161268	2R_6161268_SNP [dm3] 2R_10273763_SNP [dm6]	C	A	4.271e^-4	0.934	INTRON CAP
2L	8044472	2L_8044472_SNP [dm3] 2L_8044472_SNP [dm6]	T	C	4.271e^-4	0.934	SYNONYMOUS_CODING CG7466 INTRON CG7466	TF binding site mE1_TFBS_HSA
3L	10874058	3L_10874058_SNP [dm3] 3L_10880958_SNP [dm6]	G	C	4.274e^-4	0.934	NON_SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo
3R	21142475	3R_21142475_SNP [dm3] 3R_25316753_SNP [dm6]	G	A	4.277e^-4	0.934	SYNONYMOUS_CODING CG10553 UPSTREAM CG10559
2L	8057359	2L_8057359_SNP [dm3] 2L_8057359_SNP [dm6]	T	C	4.283e^-4	0.934	SYNONYMOUS_CODING poe
2L	6585760	2L_6585760_SNP [dm3] 2L_6585760_SNP [dm6]	T	A	4.298e^-4	0.934	INTRON CG11319
2L	4726298	2L_4726298_SNP [dm3] 2L_4726298_SNP [dm6]	T	C	4.316e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	520485	3L_520485_SNP [dm3] 3L_520485_SNP [dm6]	C	T	4.328e^-4	0.934	INTRON klar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	6079732	2L_6079732_SNP [dm3] 2L_6079732_SNP [dm6]	C	T	4.334e^-4	0.934	UPSTREAM CR44773 EXON CR9162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	1546551	3R_1546551_SNP [dm3] 3R_5720829_SNP [dm6]	T	C	4.335e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4726448	2L_4726448_SNP [dm3] 2L_4726448_SNP [dm6]	C	T	4.351e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	18888549	2L_18888549_SNP [dm3] 2L_18888549_SNP [dm6]	T	C	4.352e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	12433830	3R_12433830_SNP [dm3] 3R_16608108_SNP [dm6]	A	G	4.353e^-4	0.934	INTERGENIC
3R	4955554	3R_4955554_SNP [dm3] 3R_9129832_SNP [dm6]	G	A	4.353e^-4	0.934	INTRON pum
3R	13707658	3R_13707658_INS [dm3] 3R_17881936_INS [dm6]	A	AAT	4.353e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2553688	2L_2553688_SNP [dm3] 2L_2553688_SNP [dm6]	G	A	4.359e^-4	0.934	UPSTREAM CG3515 INTERGENIC
2R	16699231	2R_16699231_SNP [dm3] 2R_20811726_SNP [dm6]	T	A	4.361e^-4	0.934	INTERGENIC
3L	3664034	3L_3664034_SNP [dm3] 3L_3664034_SNP [dm6]	T	C	4.365e^-4	0.934	INTERGENIC
3R	24096594	3R_24096594_SNP [dm3] 3R_28270872_SNP [dm6]	A	C	4.368e^-4	0.934	INTERGENIC
2R	13804315	2R_13804315_SNP [dm3] 2R_17916810_SNP [dm6]	C	A	4.370e^-4	0.934	INTRON Elk
2L	3960928	2L_3960928_SNP [dm3] 2L_3960928_SNP [dm6]	C	G	4.374e^-4	0.934	INTRON fred
3R	4827125	3R_4827125_SNP [dm3] 3R_9001403_SNP [dm6]	T	A	4.375e^-4	0.934	INTRON CG31100
2L	16523984	2L_16523984_SNP [dm3] 2L_16523984_SNP [dm6]	T	G	4.377e^-4	0.934	INTRON CG5953
3L	14051958	3L_14051958_SNP [dm3] 3L_14058858_SNP [dm6]	T	A	4.386e^-4	0.934	INTRON CG32138
3R	13976877	3R_13976877_SNP [dm3] 3R_18151155_SNP [dm6]	G	T	4.388e^-4	0.934	UPSTREAM CG14316 INTERGENIC
2R	19660919	2R_19660919_SNP [dm3] 2R_23773396_SNP [dm6]	G	A	4.391e^-4	0.934	INTRON CG9850
3R	10550605	3R_10550605_INS [dm3] 3R_14724883_INS [dm6]	A	AA	4.401e^-4	0.934	UTR_3_PRIME CG7530 UPSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	15428257	2R_15428257_SNP [dm3] 2R_19540752_SNP [dm6]	C	T	4.403e^-4	0.934	INTRON sm
X	18223603	X_18223603_SNP [dm3] X_18329570_SNP [dm6]	A	G	4.404e^-4	0.934	INTRON CG6123
2R	16565520	2R_16565520_DEL [dm3] 2R_20678015_DEL [dm6]	CAGCAGAAAACGAGGAGAAA...	G	4.407e^-4	0.934	INTERGENIC
2R	15279160	2R_15279160_SNP [dm3] 2R_19391655_SNP [dm6]	G	C	4.412e^-4	0.934	NON_SYNONYMOUS_CODING CG11257 DOWNSTREAM SdhA
2R	18066265	2R_18066265_SNP [dm3] 2R_22178760_SNP [dm6]	A	T	4.413e^-4	0.934	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3L	3637078	3L_3637078_SNP [dm3] 3L_3637078_SNP [dm6]	G	C	4.414e^-4	0.934	INTRON dar1
2L	8424069	2L_8424069_SNP [dm3] 2L_8424069_SNP [dm6]	G	A	4.428e^-4	0.934	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	16483641	2R_16483641_SNP [dm3] 2R_20596136_SNP [dm6]	A	C	4.430e^-4	0.934	INTRON bl	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	2747633	3R_2747633_SNP [dm3] 3R_6921911_SNP [dm6]	G	A	4.432e^-4	0.934	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18148795	2R_18148795_DEL [dm3] 2R_22261290_DEL [dm6]	AA	A	4.434e^-4	0.934	INTRON dve
3R	12845458	3R_12845458_SNP [dm3] 3R_17019736_SNP [dm6]	A	T	4.439e^-4	0.934	NON_SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20426710	X_20426710_SNP [dm3] X_20555683_SNP [dm6]	C	T	4.440e^-4	0.934	INTRON RunxB
3R	21142516	3R_21142516_SNP [dm3] 3R_25316794_SNP [dm6]	T	C	4.440e^-4	0.934	NON_SYNONYMOUS_CODING CG10553 UPSTREAM CG10559
3L	10214792	3L_10214792_SNP [dm3] 3L_10221692_SNP [dm6]	G	A	4.440e^-4	0.934	SYNONYMOUS_CODING scramb1	TF binding site mE1_TFBS_cad
2L	3387713	2L_3387713_SNP [dm3] 2L_3387713_SNP [dm6]	G	T	4.442e^-4	0.934	UTR_5_PRIME Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	16499977	2L_16499977_SNP [dm3] 2L_16499977_SNP [dm6]	C	A	4.457e^-4	0.934	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2181252	2L_2181252_SNP [dm3] 2L_2181252_SNP [dm6]	A	G	4.458e^-4	0.934	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4082035	2R_4082035_SNP [dm3] 2R_8194530_SNP [dm6]	T	A	4.462e^-4	0.934	INTRON LRP1
X	7001666	X_7001666_SNP [dm3] X_7107633_SNP [dm6]	A	G	4.475e^-4	0.934	SYNONYMOUS_CODING fz4	TF binding site mE1_TFBS_sens
2L	7537794	2L_7537794_DEL [dm3] 2L_7537794_DEL [dm6]	CATGCT	C	4.475e^-4	0.934	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	2794783	2R_2794783_SNP [dm3] 2R_6907278_SNP [dm6]	C	A	4.489e^-4	0.934	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2R	18066281	2R_18066281_SNP [dm3] 2R_22178776_SNP [dm6]	G	A	4.497e^-4	0.934	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3R	26374536	3R_26374536_SNP [dm3] 3R_30548814_SNP [dm6]	C	T	4.499e^-4	0.934	INTRON tmod
2L	4340920	2L_4340920_SNP [dm3] 2L_4340920_SNP [dm6]	G	A	4.507e^-4	0.934	INTRON Atet
2L	8721870	2L_8721870_SNP [dm3] 2L_8721870_SNP [dm6]	T	A	4.508e^-4	0.934	INTRON raw
3R	13707657	3R_13707657_SNP [dm3] 3R_17881935_SNP [dm6]	A	C	4.510e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3446160	2R_3446160_DEL [dm3] 2R_7558655_DEL [dm6]	GT	G	4.510e^-4	0.934	INTRON Corin	TF binding site mE1_TFBS_chinmo
3L	3785674	3L_3785674_SNP [dm3] 3L_3785674_SNP [dm6]	C	A	4.515e^-4	0.934	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1248209	2L_1248209_DEL [dm3] 2L_1248209_DEL [dm6]	TTCCCCG	T	4.526e^-4	0.934	INTERGENIC
2R	14099371	2R_14099371_SNP [dm3] 2R_18211866_SNP [dm6]	A	G	4.528e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens
3L	19939511	3L_19939511_SNP [dm3] 3L_19946411_SNP [dm6]	C	T	4.534e^-4	0.934	INTRON Ac76E
2L	13189726	2L_13189726_SNP [dm3] 2L_13189726_SNP [dm6]	A	T	4.552e^-4	0.934	START_GAINED CG16974 UTR_5_PRIME CG16974 INTRON CG16974
2L	20525116	2L_20525116_SNP [dm3] 2L_20525116_SNP [dm6]	T	A	4.554e^-4	0.934	INTERGENIC
2R	2639932	2R_2639932_SNP [dm3] 2R_6752427_SNP [dm6]	C	T	4.556e^-4	0.934	INTRON Eb1	TF binding site mE1_TFBS_sens
3L	3785877	3L_3785877_SNP [dm3] 3L_3785877_SNP [dm6]	T	C	4.563e^-4	0.934	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8672070	2L_8672070_SNP [dm3] 2L_8672070_SNP [dm6]	T	C	4.564e^-4	0.934	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
3L	10045569	3L_10045569_SNP [dm3] 3L_10052469_SNP [dm6]	T	C	4.567e^-4	0.934	INTRON dpr6
2L	3388481	2L_3388481_SNP [dm3] 2L_3388481_SNP [dm6]	T	A	4.577e^-4	0.934	UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
2L	3388482	2L_3388482_SNP [dm3] 2L_3388482_SNP [dm6]	A	T	4.577e^-4	0.934	UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
3L	3528540	3L_3528540_SNP [dm3] 3L_3528540_SNP [dm6]	A	T	4.585e^-4	0.934	INTRON Eip63E
2R	6546355	2R_6546355_SNP [dm3] 2R_10658850_SNP [dm6]	C	A	4.587e^-4	0.934	INTERGENIC
3R	14770633	3R_14770633_SNP [dm3] 3R_18944911_SNP [dm6]	T	C	4.592e^-4	0.934	INTRON CG42613
3L	7837189	3L_7837189_SNP [dm3] 3L_7844089_SNP [dm6]	C	A	4.598e^-4	0.934	INTRON Pdp1	regulatory region REDfly_CRMs
3L	9976054	3L_9976054_SNP [dm3] 3L_9982954_SNP [dm6]	C	T	4.610e^-4	0.934	INTRON dpr6
3R	25599792	3R_25599792_SNP [dm3] 3R_29774070_SNP [dm6]	A	G	4.615e^-4	0.934	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6983302	2L_6983302_SNP [dm3] 2L_6983302_SNP [dm6]	G	C	4.616e^-4	0.934	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6656301	2L_6656301_SNP [dm3] 2L_6656301_SNP [dm6]	G	A	4.624e^-4	0.934	UTR_5_PRIME CG31633 DOWNSTREAM CG31636
X	10206774	X_10206774_SNP [dm3] X_10312741_SNP [dm6]	T	A	4.635e^-4	0.934	INTRON alpha-Man-I
2R	3011053	2R_3011053_SNP [dm3] 2R_7123548_SNP [dm6]	C	T	4.642e^-4	0.934	INTRON esn	TF binding site mE1_TFBS_cad
2R	13742081	2R_13742081_SNP [dm3] 2R_17854576_SNP [dm6]	A	G	4.649e^-4	0.934	UPSTREAM olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
3R	13976899	3R_13976899_SNP [dm3] 3R_18151177_SNP [dm6]	T	C	4.652e^-4	0.934	UPSTREAM CG14316 INTERGENIC
2L	5289993	2L_5289993_SNP [dm3] 2L_5289993_SNP [dm6]	T	C	4.655e^-4	0.934	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	11556988	2L_11556988_SNP [dm3] 2L_11556988_SNP [dm6]	T	G	4.657e^-4	0.934	INTERGENIC
2L	16011140	2L_16011140_SNP [dm3] 2L_16011140_SNP [dm6]	G	T	4.661e^-4	0.934	INTRON beat-Ic
2R	20294721	2R_20294721_SNP [dm3] 2R_24407198_SNP [dm6]	G	A	4.668e^-4	0.934	SYNONYMOUS_CODING SerT
2R	6536693	2R_6536693_SNP [dm3] 2R_10649188_SNP [dm6]	C	T	4.671e^-4	0.934	NON_SYNONYMOUS_CODING CG12934 DOWNSTREAM Elp2
X	2095662	X_2095662_SNP [dm3] X_2201629_SNP [dm6]	T	C	4.673e^-4	0.934	DOWNSTREAM CG18031 INTRON Mct1 EXON CR43637
X	12817744	X_12817744_SNP [dm3] X_12923711_SNP [dm6]	A	T	4.674e^-4	0.934	INTRON fne
2R	6159891	2R_6159891_SNP [dm3] 2R_10272386_SNP [dm6]	G	A	4.678e^-4	0.934	INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_HSA
3L	18629836	3L_18629836_SNP [dm3] 3L_18636736_SNP [dm6]	G	A	4.681e^-4	0.934	INTRON MYPT-75D
X	4793688	X_4793688_SNP [dm3] X_4899655_SNP [dm6]	G	C	4.691e^-4	0.934	INTRON CG42594	TF binding site mE1_TFBS_HSA
2R	16662064	2R_16662064_SNP [dm3] 2R_20774559_SNP [dm6]	C	T	4.692e^-4	0.934	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3917127	2R_3917127_SNP [dm3] 2R_8029622_SNP [dm6]	T	G	4.692e^-4	0.934	UPSTREAM CR43724 EXON CR43724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21121590	3R_21121590_SNP [dm3] 3R_25295868_SNP [dm6]	T	A	4.701e^-4	0.934	UPSTREAM CG31102 DOWNSTREAM CG31097 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16245352	2R_16245352_SNP [dm3] 2R_20357847_SNP [dm6]	C	A	4.713e^-4	0.934	INTERGENIC
3R	10444964	3R_10444964_SNP [dm3] 3R_14619242_SNP [dm6]	T	A	4.721e^-4	0.934	UTR_3_PRIME put DOWNSTREAM CG14853	TF binding site mE1_TFBS_kn
3L	18262134	3L_18262134_SNP [dm3] 3L_18269034_SNP [dm6]	T	C	4.722e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4115191	2R_4115191_SNP [dm3] 2R_8227686_SNP [dm6]	A	C	4.726e^-4	0.934	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17860238	2R_17860238_SNP [dm3] 2R_21972733_SNP [dm6]	C	A	4.732e^-4	0.934	UPSTREAM CG9304 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13707649	3R_13707649_DEL [dm3] 3R_17881927_DEL [dm6]	ACAA	A	4.734e^-4	0.934	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4153930	2R_4153930_SNP [dm3] 2R_8266425_SNP [dm6]	A	G	4.745e^-4	0.934	SYNONYMOUS_CODING CG30375
3L	11043322	3L_11043322_SNP [dm3] 3L_11050222_SNP [dm6]	A	T	4.750e^-4	0.934	UPSTREAM CR45119 INTRON CG43693
3R	21138092	3R_21138092_SNP [dm3] 3R_25312370_SNP [dm6]	G	A	4.754e^-4	0.934	SYNONYMOUS_CODING CG31087
2R	11743179	2R_11743179_SNP [dm3] 2R_15855674_SNP [dm6]	C	T	4.756e^-4	0.934	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
2R	14165020	2R_14165020_INS [dm3] 2R_18277515_INS [dm6]	T	TTATAAAAAT	4.767e^-4	0.934	UTR_5_PRIME pen-2 UPSTREAM Ote DOWNSTREAM sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	18919097	2R_18919097_SNP [dm3] 2R_23031574_SNP [dm6]	A	G	4.769e^-4	0.934	INTRON twi & 1 other
X	5027067	X_5027067_SNP [dm3] X_5133034_SNP [dm6]	A	G	4.781e^-4	0.934	DOWNSTREAM Rpn13R INTRON rg & 1 other
2L	3386937	2L_3386937_SNP [dm3] 2L_3386937_SNP [dm6]	C	T	4.782e^-4	0.934	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2L	8743355	2L_8743355_SNP [dm3] 2L_8743355_SNP [dm6]	C	T	4.782e^-4	0.934	INTERGENIC
X	10206828	X_10206828_SNP [dm3] X_10312795_SNP [dm6]	T	A	4.783e^-4	0.934	INTRON alpha-Man-I
3R	7876214	3R_7876214_SNP [dm3] 3R_12050492_SNP [dm6]	T	C	4.784e^-4	0.934	INTERGENIC
2L	21258700	2L_21258700_SNP [dm3] 2L_21258700_SNP [dm6]	A	T	4.819e^-4	0.934	UTR_3_PRIME Hr39 DOWNSTREAM Hr39
2L	4726315	2L_4726315_INS [dm3] 2L_4726315_INS [dm6]	T	TA	4.825e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16521970	2L_16521970_SNP [dm3] 2L_16521970_SNP [dm6]	G	A	4.831e^-4	0.934	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3576425	3L_3576425_INS [dm3] 3L_3576425_INS [dm6]	G	AAA	4.842e^-4	0.934	INTRON Eip63E
X	6854878	X_6854878_SNP [dm3] X_6960845_SNP [dm6]	T	A	4.867e^-4	0.934	INTRON CG14431 & 1 other
2L	15188889	2L_15188889_SNP [dm3] 2L_15188889_SNP [dm6]	C	T	4.869e^-4	0.934	INTRON CG4168
2L	17798791	2L_17798791_SNP [dm3] 2L_17798791_SNP [dm6]	T	A	4.871e^-4	0.934	NON_SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14988298	3R_14988298_SNP [dm3] 3R_19162576_SNP [dm6]	A	C	4.879e^-4	0.934	UPSTREAM CG42358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4827124	3R_4827124_SNP [dm3] 3R_9001402_SNP [dm6]	A	G	4.880e^-4	0.934	INTRON CG31100
2L	16555493	2L_16555493_INS [dm3] 2L_16555493_INS [dm6]	T	TGGATGCCTTCGT...	4.888e^-4	0.934	INTRON CG42389
3L	10214509	3L_10214509_SNP [dm3] 3L_10221409_SNP [dm6]	A	G	4.903e^-4	0.934	SYNONYMOUS_CODING scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18856984	3L_18856984_DEL [dm3] 3L_18863884_DEL [dm6]	CTACCT	C	4.909e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
2R	15434585	2R_15434585_SNP [dm3] 2R_19547080_SNP [dm6]	G	A	4.911e^-4	0.934	UPSTREAM sm INTRON sm
3R	13652893	3R_13652893_SNP [dm3] 3R_17827171_SNP [dm6]	C	T	4.924e^-4	0.934	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6602229	2R_6602229_SNP [dm3] 2R_10714724_SNP [dm6]	A	T	4.947e^-4	0.934	NON_SYNONYMOUS_CODING stan
3L	18856971	3L_18856971_SNP [dm3] 3L_18863871_SNP [dm6]	G	A	4.948e^-4	0.934	UPSTREAM CG6865 INTRON CG6865
2L	3065814	2L_3065814_SNP [dm3] 2L_3065814_SNP [dm6]	G	C	4.950e^-4	0.934	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17289514	3L_17289514_SNP [dm3] 3L_17296414_SNP [dm6]	T	C	4.951e^-4	0.934	INTERGENIC
3L	9296031	3L_9296031_SNP [dm3] 3L_9302931_SNP [dm6]	A	G	4.951e^-4	0.934	INTERGENIC
X	20426806	X_20426806_SNP [dm3] X_20555779_SNP [dm6]	C	G	4.970e^-4	0.934	INTRON RunxB
3L	13922206	3L_13922206_SNP [dm3] 3L_13929106_SNP [dm6]	A	T	4.982e^-4	0.934	UPSTREAM Gl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4271691	2L_4271691_SNP [dm3] 2L_4271691_SNP [dm6]	C	T	4.984e^-4	0.934	INTERGENIC
3L	1563517	3L_1563517_SNP [dm3] 3L_1563517_SNP [dm6]	A	T	4.984e^-4	0.934	INTRON CG7879
2R	3658804	2R_3658804_SNP [dm3] 2R_7771299_SNP [dm6]	A	G	4.991e^-4	0.934	INTRON CG30497 & 1 other
2R	14888054	2R_14888054_SNP [dm3] 2R_19000549_SNP [dm6]	G	T	5.006e^-4	0.934	INTRON tn
3R	11325598	3R_11325598_SNP [dm3] 3R_15499876_SNP [dm6]	G	A	5.006e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20706116	2R_20706116_INS [dm3] 2R_24818593_INS [dm6]	G	GTTGTT	5.010e^-4	0.934	INTRON Dll
X	2665925	X_2665925_SNP [dm3] X_2771892_SNP [dm6]	T	A	5.016e^-4	0.934	INTRON kirre
3R	21140228	3R_21140228_SNP [dm3] 3R_25314506_SNP [dm6]	A	G	5.023e^-4	0.934	UTR_3_PRIME CG10559 UPSTREAM CG31087
X	1156993	X_1156993_SNP [dm3] X_1262960_SNP [dm6]	G	T	5.026e^-4	0.934	INTRON Atf3
2R	17087247	2R_17087247_SNP [dm3] 2R_21199742_SNP [dm6]	T	C	5.031e^-4	0.934	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	22946407	3L_22946407_SNP [dm3] 3L_22953307_SNP [dm6]	C	G	5.031e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20723000	2R_20723000_SNP [dm3] 2R_24835477_SNP [dm6]	A	G	5.035e^-4	0.934	UTR_3_PRIME Dll DOWNSTREAM Dll
2R	6610894	2R_6610894_SNP [dm3] 2R_10723389_SNP [dm6]	T	G	5.036e^-4	0.934	UTR_3_PRIME Rab3	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16346761	2R_16346761_SNP [dm3] 2R_20459256_SNP [dm6]	G	A	5.039e^-4	0.934	INTRON CG12484
2R	16346770	2R_16346770_SNP [dm3] 2R_20459265_SNP [dm6]	T	C	5.039e^-4	0.934	INTRON CG12484
3R	25372775	3R_25372775_SNP [dm3] 3R_29547053_SNP [dm6]	T	C	5.039e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	15319315	X_15319315_SNP [dm3] X_15425282_SNP [dm6]	C	T	5.040e^-4	0.934	INTRON Cngl
2R	1184543	2R_1184543_SNP [dm3] 2R_5297038_SNP [dm6]	C	A	5.041e^-4	0.934	INTERGENIC	transposable element FlyBase
2L	19850879	2L_19850879_SNP [dm3] 2L_19850879_SNP [dm6]	A	T	5.042e^-4	0.934	INTRON sick
2L	19084735	2L_19084735_SNP [dm3] 2L_19084735_SNP [dm6]	G	C	5.045e^-4	0.934	INTRON Lim3
2L	16523970	2L_16523970_SNP [dm3] 2L_16523970_SNP [dm6]	C	A	5.050e^-4	0.934	INTRON CG5953
3R	13976908	3R_13976908_SNP [dm3] 3R_18151186_SNP [dm6]	A	C	5.054e^-4	0.934	UPSTREAM CG14316 INTERGENIC
2L	2020744	2L_2020744_DEL [dm3] 2L_2020744_DEL [dm6]	ACTGAA	A	5.060e^-4	0.934	INTRON CG4238
3L	6771179	3L_6771179_SNP [dm3] 3L_6778079_SNP [dm6]	A	T	5.061e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	8164410	3R_8164410_SNP [dm3] 3R_12338688_SNP [dm6]	G	A	5.082e^-4	0.934	INTRON CR44941
2L	8044715	2L_8044715_SNP [dm3] 2L_8044715_SNP [dm6]	A	G	5.090e^-4	0.934	SYNONYMOUS_CODING CG7466 INTRON CG7466
3R	19265646	3R_19265646_SNP [dm3] 3R_23439924_SNP [dm6]	A	G	5.099e^-4	0.934	INTRON CG4374
2R	19000482	2R_19000482_SNP [dm3] 2R_23112959_SNP [dm6]	G	A	5.113e^-4	0.934	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4705864	2L_4705864_SNP [dm3] 2L_4705864_SNP [dm6]	T	A	5.114e^-4	0.934	INTRON CG34351
3L	9970914	3L_9970914_SNP [dm3] 3L_9977814_SNP [dm6]	C	G	5.117e^-4	0.934	INTRON dpr6
3R	21142049	3R_21142049_SNP [dm3] 3R_25316327_SNP [dm6]	G	T	5.122e^-4	0.934	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
3R	26621106	3R_26621106_SNP [dm3] 3R_30795384_SNP [dm6]	C	A	5.125e^-4	0.934	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14767788	3R_14767788_SNP [dm3] 3R_18942066_SNP [dm6]	T	G	5.127e^-4	0.934	INTRON CG42613	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8722707	2L_8722707_SNP [dm3] 2L_8722707_SNP [dm6]	C	T	5.144e^-4	0.934	INTRON raw
2R	19001323	2R_19001323_SNP [dm3] 2R_23113800_SNP [dm6]	A	C	5.145e^-4	0.934	EXON CR44782	TF binding site BDTNP1_TFBS_dl
3R	1599654	3R_1599654_INS [dm3] 3R_5773932_INS [dm6]	G	GG	5.149e^-4	0.934	INTRON CG2082
3R	9155988	3R_9155988_SNP [dm3] 3R_13330266_SNP [dm6]	C	T	5.149e^-4	0.934	SYNONYMOUS_CODING PK2-R2
2L	4115674	2L_4115674_SNP [dm3] 2L_4115674_SNP [dm6]	C	T	5.151e^-4	0.934	UTR_3_PRIME ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	13671125	3R_13671125_SNP [dm3] 3R_17845403_SNP [dm6]	C	G	5.152e^-4	0.934	INTRON tinc
3L	1123543	3L_1123543_SNP [dm3] 3L_1123543_SNP [dm6]	C	T	5.154e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26135848	3R_26135848_SNP [dm3] 3R_30310126_SNP [dm6]	A	C	5.156e^-4	0.934	INTRON hdc
2R	16313474	2R_16313474_SNP [dm3] 2R_20425969_SNP [dm6]	G	T	5.165e^-4	0.934	INTRON CG12484
2L	12817721	2L_12817721_SNP [dm3] 2L_12817721_SNP [dm6]	G	A	5.170e^-4	0.934	UTR_3_PRIME kek1
2L	12845083	2L_12845083_SNP [dm3] 2L_12845083_SNP [dm6]	T	G	5.180e^-4	0.934	INTERGENIC
3R	15521741	3R_15521741_SNP [dm3] 3R_19696019_SNP [dm6]	G	A	5.184e^-4	0.934	INTRON Naam
3L	600944	3L_600944_SNP [dm3] 3L_600944_SNP [dm6]	T	G	5.185e^-4	0.934	INTRON CG13893	TF binding site mE1_TFBS_inv
2L	6644146	2L_6644146_SNP [dm3] 2L_6644146_SNP [dm6]	G	A	5.190e^-4	0.934	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19897443	3R_19897443_INS [dm3] 3R_24071721_INS [dm6]	A	ATA	5.197e^-4	0.934	INTRON 4EHP
3R	9187602	3R_9187602_SNP [dm3] 3R_13361880_SNP [dm6]	T	A	5.199e^-4	0.934	UTR_3_PRIME poly
X	21990018	X_21990018_DEL [dm3] X_22588182_DEL [dm6]	AGAGAGAAAGCTGTAGTC...	A	5.208e^-4	0.934	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna transposable element FlyBase
3R	21142170	3R_21142170_SNP [dm3] 3R_25316448_SNP [dm6]	C	G	5.214e^-4	0.934	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
2R	7139423	2R_7139423_SNP [dm3] 2R_11251918_SNP [dm6]	T	G	5.223e^-4	0.934	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14640580	3L_14640580_SNP [dm3] 3L_14647480_SNP [dm6]	T	C	5.223e^-4	0.934	INTRON dlp
3L	2625704	3L_2625704_SNP [dm3] 3L_2625704_SNP [dm6]	T	C	5.225e^-4	0.934	INTRON Pxn
2L	854212	2L_854212_SNP [dm3] 2L_854212_SNP [dm6]	T	C	5.227e^-4	0.934	SYNONYMOUS_CODING kraken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19696714	2L_19696714_SNP [dm3] 2L_19696714_SNP [dm6]	G	C	5.249e^-4	0.934	INTRON Lar
2R	2431785	2R_2431785_SNP [dm3] 2R_6544280_SNP [dm6]	A	T	5.251e^-4	0.934	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20736155	2R_20736155_INS [dm3] 2R_24848632_INS [dm6]	C	CCGTGTTCCAT...	5.251e^-4	0.934	UPSTREAM CG3650 INTERGENIC	regulatory region REDfly_CRMs
3L	3584327	3L_3584327_SNP [dm3] 3L_3584327_SNP [dm6]	C	T	5.259e^-4	0.934	INTRON Eip63E
3L	17694757	3L_17694757_SNP [dm3] 3L_17701657_SNP [dm6]	T	C	5.261e^-4	0.934	INTRON Ccn
2R	3916979	2R_3916979_SNP [dm3] 2R_8029474_SNP [dm6]	G	T	5.262e^-4	0.934	UPSTREAM CR43724 EXON CR43724	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7708205	2R_7708205_SNP [dm3] 2R_11820700_SNP [dm6]	A	C	5.269e^-4	0.934	INTERGENIC
X	18990019	X_18990019_DEL [dm3] X_19095986_DEL [dm6]	GGATTT	G	5.277e^-4	0.934	INTERGENIC

By genomic position
Variant impact
Gene name

Food_Intake_SUC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results