DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.040e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	6.658e-05
In_3R_P	0.05773

Kruskal-Wallis test

Covariate	χ²	p-value	Significance

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2072 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	11800356	2R_11800356_SNP [dm3] 2R_15912851_SNP [dm6]	T	C	9.990e^-8	0.187	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	14932786	2L_14932786_SNP [dm3] 2L_14932786_SNP [dm6]	A	C	1.147e^-6	0.717	INTRON CG42313
2R	2464467	2R_2464467_SNP [dm3] 2R_6576962_SNP [dm6]	C	G	1.884e^-6	0.717	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14586905	2R_14586905_SNP [dm3] 2R_18699400_SNP [dm6]	A	C	2.012e^-6	0.717	SYNONYMOUS_CODING Sik3
3R	9864205	3R_9864205_SNP [dm3] 3R_14038483_SNP [dm6]	C	A	2.433e^-6	0.717	INTERGENIC
3L	8244023	3L_8244023_SNP [dm3] 3L_8250923_SNP [dm6]	G	C	2.744e^-6	0.717	INTRON Dscam4
2L	11203841	2L_11203841_SNP [dm3] 2L_11203841_SNP [dm6]	T	A	2.906e^-6	0.717	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7426885	2R_7426885_SNP [dm3] 2R_11539380_SNP [dm6]	C	G	3.119e^-6	0.717	INTERGENIC
2L	20906431	2L_20906431_SNP [dm3] 2L_20906431_SNP [dm6]	A	T	3.439e^-6	0.717	INTRON sky & 1 other
2R	7426702	2R_7426702_SNP [dm3] 2R_11539197_SNP [dm6]	G	C	4.315e^-6	0.809	INTERGENIC
2L	21760181	2L_21760181_SNP [dm3] 2L_21760181_SNP [dm6]	C	A	5.200e^-6	0.863	INTRON CG1416
2L	20906433	2L_20906433_DEL [dm3] 2L_20906433_DEL [dm6]	CTTCT	A	5.544e^-6	0.863	INTRON sky & 1 other
2R	11800211	2R_11800211_SNP [dm3] 2R_15912706_SNP [dm6]	A	C	7.163e^-6	0.863	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	10860499	2R_10860499_SNP [dm3] 2R_14972994_SNP [dm6]	C	A	8.591e^-6	0.863	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9864857	3R_9864857_SNP [dm3] 3R_14039135_SNP [dm6]	G	T	8.625e^-6	0.863	INTERGENIC
3R	9864856	3R_9864856_SNP [dm3] 3R_14039134_SNP [dm6]	G	A	9.357e^-6	0.863	INTERGENIC
3L	13199363	3L_13199363_DEL [dm3] 3L_13206263_DEL [dm6]	TCGC	T	9.888e^-6	0.863	INTERGENIC
2L	14745455	2L_14745455_SNP [dm3] 2L_14745455_SNP [dm6]	A	C	1.054e^-5	0.863	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2R	9048165	2R_9048165_SNP [dm3] 2R_13160660_SNP [dm6]	G	A	1.078e^-5	0.863	DOWNSTREAM CG34439 INTRON Nrk	TF binding site mE1_TFBS_HSA
2L	20690724	2L_20690724_SNP [dm3] 2L_20690724_SNP [dm6]	A	T	1.235e^-5	0.863	INTRON Hr38	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8246366	3L_8246366_SNP [dm3] 3L_8253266_SNP [dm6]	G	C	1.273e^-5	0.863	INTRON Dscam4
2L	12175796	2L_12175796_SNP [dm3] 2L_12175796_SNP [dm6]	A	C	1.442e^-5	0.863	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9864570	3R_9864570_SNP [dm3] 3R_14038848_SNP [dm6]	G	A	1.489e^-5	0.863	INTERGENIC
3R	23345353	3R_23345353_SNP [dm3] 3R_27519631_SNP [dm6]	C	T	1.505e^-5	0.863	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21759480	2L_21759480_SNP [dm3] 2L_21759480_SNP [dm6]	C	T	1.507e^-5	0.863	INTRON CG1416
3R	26070149	3R_26070149_SNP [dm3] 3R_30244427_SNP [dm6]	G	A	1.564e^-5	0.863	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
3L	8243798	3L_8243798_SNP [dm3] 3L_8250698_SNP [dm6]	G	A	1.593e^-5	0.863	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
2L	20618078	2L_20618078_SNP [dm3] 2L_20618078_SNP [dm6]	T	C	1.666e^-5	0.863	DOWNSTREAM mir-288 INTRON CR44909
3R	13436284	3R_13436284_SNP [dm3] 3R_17610562_SNP [dm6]	T	C	1.678e^-5	0.863	DOWNSTREAM Edg91 & 1 other INTERGENIC
2R	18539080	2R_18539080_SNP [dm3] 2R_22651575_SNP [dm6]	G	A	1.741e^-5	0.863	SYNONYMOUS_CODING nsr DOWNSTREAM Cyp6d2	TF binding site mE1_TFBS_inv
2R	18914446	2R_18914446_SNP [dm3] 2R_23026923_SNP [dm6]	A	G	1.826e^-5	0.863	INTRON twi & 1 other
3L	13203763	3L_13203763_INS [dm3] 3L_13210663_INS [dm6]	T	CA	1.907e^-5	0.863	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13335866	2R_13335866_SNP [dm3] 2R_17448361_SNP [dm6]	C	T	2.104e^-5	0.863	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2L	15053916	2L_15053916_SNP [dm3] 2L_15053916_SNP [dm6]	T	A	2.159e^-5	0.863	INTRON ck	regulatory region REDfly_CRMs
2L	18920640	2L_18920640_SNP [dm3] 2L_18920640_SNP [dm6]	T	A	2.187e^-5	0.863	INTRON ssp3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	21760063	2L_21760063_SNP [dm3] 2L_21760063_SNP [dm6]	T	A	2.209e^-5	0.863	INTRON CG1416
2L	21182979	2L_21182979_SNP [dm3] 2L_21182979_SNP [dm6]	A	T	2.264e^-5	0.863	UTR_3_PRIME Ret DOWNSTREAM Mcm10
X	19362686	X_19362686_SNP [dm3] X_19468653_SNP [dm6]	T	C	2.308e^-5	0.863	SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070435	3R_26070435_SNP [dm3] 3R_30244713_SNP [dm6]	A	T	2.309e^-5	0.863	INTRON CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8197818	3L_8197818_SNP [dm3] 3L_8204718_SNP [dm6]	C	A	2.363e^-5	0.863	INTERGENIC
2L	7008495	2L_7008495_SNP [dm3] 2L_7008495_SNP [dm6]	G	A	2.373e^-5	0.863	START_GAINED uif UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	10328811	2R_10328811_SNP [dm3] 2R_14441306_SNP [dm6]	C	T	2.396e^-5	0.863	INTRON Oaz
2R	10324875	2R_10324875_SNP [dm3] 2R_14437370_SNP [dm6]	A	G	2.782e^-5	0.863	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14539815	2R_14539815_SNP [dm3] 2R_18652310_SNP [dm6]	G	C	2.843e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9864852	3R_9864852_SNP [dm3] 3R_14039130_SNP [dm6]	G	A	2.909e^-5	0.863	INTERGENIC
2R	17742324	2R_17742324_SNP [dm3] 2R_21854819_SNP [dm6]	G	A	2.920e^-5	0.863	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11799093	2R_11799093_SNP [dm3] 2R_15911588_SNP [dm6]	G	A	2.923e^-5	0.863	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2501657	2L_2501657_SNP [dm3] 2L_2501657_SNP [dm6]	G	T	2.929e^-5	0.863	INTERGENIC
2L	16238982	2L_16238982_SNP [dm3] 2L_16238982_SNP [dm6]	C	A	2.950e^-5	0.863	INTRON CG42817
3R	22745410	3R_22745410_DEL [dm3] 3R_26919688_DEL [dm6]	GGCAAAACAACACTTTG...	G	2.953e^-5	0.863	INTRON sda	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8235999	3L_8235999_SNP [dm3] 3L_8242899_SNP [dm6]	C	T	3.005e^-5	0.863	INTRON Dscam4
X	13681504	X_13681504_SNP [dm3] X_13787471_SNP [dm6]	A	T	3.015e^-5	0.863	INTRON inaE	TF binding site mE1_TFBS_kn
X	13681525	X_13681525_SNP [dm3] X_13787492_SNP [dm6]	A	T	3.025e^-5	0.863	INTRON inaE	TF binding site mE1_TFBS_kn
2L	21749464	2L_21749464_SNP [dm3] 2L_21749464_SNP [dm6]	G	T	3.034e^-5	0.863	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7426775	2R_7426775_SNP [dm3] 2R_11539270_SNP [dm6]	G	C	3.090e^-5	0.863	INTERGENIC
2R	11800252	2R_11800252_SNP [dm3] 2R_15912747_SNP [dm6]	G	T	3.212e^-5	0.863	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	18628036	3R_18628036_SNP [dm3] 3R_22802314_SNP [dm6]	T	C	3.255e^-5	0.863	INTERGENIC
2L	14851473	2L_14851473_SNP [dm3] 2L_14851473_SNP [dm6]	G	T	3.362e^-5	0.863	UTR_5_PRIME CG15279	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11803074	2R_11803074_SNP [dm3] 2R_15915569_SNP [dm6]	C	A	3.433e^-5	0.863	UPSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16290107	2L_16290107_SNP [dm3] 2L_16290107_SNP [dm6]	G	A	3.466e^-5	0.863	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
2R	14539813	2R_14539813_SNP [dm3] 2R_18652308_SNP [dm6]	C	T	3.575e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13742414	2L_13742414_SNP [dm3] 2L_13742414_SNP [dm6]	G	A	3.601e^-5	0.863	INTERGENIC
3R	9862658	3R_9862658_SNP [dm3] 3R_14036936_SNP [dm6]	G	T	3.629e^-5	0.863	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20855768	2L_20855768_DEL [dm3] 2L_20855768_DEL [dm6]	TT	T	3.634e^-5	0.863	INTRON twit	TF binding site mE1_TFBS_inv
2L	15017785	2L_15017785_SNP [dm3] 2L_15017785_SNP [dm6]	A	C	3.651e^-5	0.863	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7731957	3L_7731957_SNP [dm3] 3L_7738857_SNP [dm6]	G	A	3.662e^-5	0.863	INTRON CG32373 & 1 other
2R	16477791	2R_16477791_DEL [dm3] 2R_20590286_DEL [dm6]	GAAG	G	3.691e^-5	0.863	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	663990	X_663990_SNP [dm3] X_769957_SNP [dm6]	C	G	3.707e^-5	0.863	UTR_5_PRIME fz3 UPSTREAM fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	1724705	2L_1724705_DEL [dm3] 2L_1724705_DEL [dm6]	GTTG	AAA	3.713e^-5	0.863	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10860455	2R_10860455_SNP [dm3] 2R_14972950_SNP [dm6]	G	A	3.834e^-5	0.863	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14539830	2R_14539830_DEL [dm3] 2R_18652325_DEL [dm6]	ACCTCGG	A	3.845e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17006857	3R_17006857_SNP [dm3] 3R_21181135_SNP [dm6]	C	A	3.914e^-5	0.863	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15017880	2L_15017880_SNP [dm3] 2L_15017880_SNP [dm6]	T	C	3.995e^-5	0.863	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9949487	X_9949487_SNP [dm3] X_10055454_SNP [dm6]	A	G	4.089e^-5	0.863	UTR_3_PRIME Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3R	15774953	3R_15774953_SNP [dm3] 3R_19949231_SNP [dm6]	T	A	4.204e^-5	0.863	DOWNSTREAM CG4783 INTRON Hs6st
X	9889544	X_9889544_SNP [dm3] X_9995511_SNP [dm6]	T	G	4.409e^-5	0.863	INTRON CG32694
3R	11810366	3R_11810366_SNP [dm3] 3R_15984644_SNP [dm6]	A	C	4.489e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	10907267	2L_10907267_SNP [dm3] 2L_10907267_SNP [dm6]	G	T	4.555e^-5	0.863	SYNONYMOUS_CODING CG7309
2L	11203423	2L_11203423_SNP [dm3] 2L_11203423_SNP [dm6]	G	A	4.566e^-5	0.863	START_GAINED Ca-beta UTR_5_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15336590	3L_15336590_SNP [dm3] 3L_15343490_SNP [dm6]	G	A	4.591e^-5	0.863	UTR_3_PRIME Toll-6
3L	8234419	3L_8234419_SNP [dm3] 3L_8241319_SNP [dm6]	C	A	4.603e^-5	0.863	UPSTREAM CG7213 INTRON Dscam4
2L	18027296	2L_18027296_SNP [dm3] 2L_18027296_SNP [dm6]	A	G	4.610e^-5	0.863	INTRON rdo
3R	9864583	3R_9864583_SNP [dm3] 3R_14038861_SNP [dm6]	C	T	4.624e^-5	0.863	INTERGENIC
3R	13146575	3R_13146575_SNP [dm3] 3R_17320853_SNP [dm6]	A	G	4.636e^-5	0.863	NON_SYNONYMOUS_CODING beat-IIa
2R	8968650	2R_8968650_SNP [dm3] 2R_13081145_SNP [dm6]	T	G	4.673e^-5	0.863	INTERGENIC
3R	26936012	3R_26936012_SNP [dm3] 3R_31110290_SNP [dm6]	A	T	4.835e^-5	0.863	INTERGENIC
3L	13199359	3L_13199359_INS [dm3] 3L_13206259_INS [dm6]	C	CCGCG	4.846e^-5	0.863	INTERGENIC
2R	14539824	2R_14539824_SNP [dm3] 2R_18652319_SNP [dm6]	T	A	4.861e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2894462	2R_2894462_SNP [dm3] 2R_7006957_SNP [dm6]	T	G	4.898e^-5	0.863	DOWNSTREAM CG30160 INTRON Tsp42Ec
2R	4144294	2R_4144294_SNP [dm3] 2R_8256789_SNP [dm6]	A	C	5.097e^-5	0.863	UTR_3_PRIME CG14760	TF binding site mE1_TFBS_cad
3L	7993329	3L_7993329_SNP [dm3] 3L_8000229_SNP [dm6]	T	G	5.139e^-5	0.863	INTRON nmo
X	7987106	X_7987106_SNP [dm3] X_8093073_SNP [dm6]	G	A	5.381e^-5	0.863	UPSTREAM Ubc-E2H INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	12285769	2L_12285769_SNP [dm3] 2L_12285769_SNP [dm6]	G	A	5.383e^-5	0.863	INTRON aret
X	16322009	X_16322009_SNP [dm3] X_16427976_SNP [dm6]	C	A	5.579e^-5	0.863	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_zfh1
2L	12175947	2L_12175947_SNP [dm3] 2L_12175947_SNP [dm6]	C	A	5.650e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	9431122	2L_9431122_SNP [dm3] 2L_9431122_SNP [dm6]	C	G	5.815e^-5	0.863	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2642296	2L_2642296_SNP [dm3] 2L_2642296_SNP [dm6]	A	G	5.856e^-5	0.863	INTERGENIC
2L	10701703	2L_10701703_SNP [dm3] 2L_10701703_SNP [dm6]	T	A	5.950e^-5	0.863	UPSTREAM Lip1 DOWNSTREAM Lip2 INTERGENIC	regulatory region REDfly_CRMs
3R	21144454	3R_21144454_SNP [dm3] 3R_25318732_SNP [dm6]	C	T	5.979e^-5	0.863	SYNONYMOUS_CODING CG10560 UPSTREAM CG10553
2L	12175942	2L_12175942_SNP [dm3] 2L_12175942_SNP [dm6]	T	G	5.981e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3L	8811770	3L_8811770_SNP [dm3] 3L_8818670_SNP [dm6]	C	A	6.004e^-5	0.863	INTERGENIC
2L	1399736	2L_1399736_SNP [dm3] 2L_1399736_SNP [dm6]	T	C	6.075e^-5	0.863	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11696940	X_11696940_SNP [dm3] X_11802907_SNP [dm6]	C	G	6.077e^-5	0.863	SYNONYMOUS_CODING Hsc70-3	TF binding site mE1_TFBS_sens
X	11688593	X_11688593_SNP [dm3] X_11794560_SNP [dm6]	C	G	6.121e^-5	0.863	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl
2R	6895103	2R_6895103_SNP [dm3] 2R_11007598_SNP [dm6]	A	T	6.219e^-5	0.863	INTRON luna
X	8991054	X_8991054_SNP [dm3] X_9097021_SNP [dm6]	G	A	6.230e^-5	0.863	INTRON CG7766
X	16322023	X_16322023_SNP [dm3] X_16427990_SNP [dm6]	C	T	6.233e^-5	0.863	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_zfh1
3R	23687543	3R_23687543_SNP [dm3] 3R_27861821_SNP [dm6]	C	G	6.242e^-5	0.863	INTRON CG34353
X	638205	X_638205_SNP [dm3] X_744172_SNP [dm6]	A	G	6.256e^-5	0.863	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8204637	3L_8204637_SNP [dm3] 3L_8211537_SNP [dm6]	C	T	6.304e^-5	0.863	UPSTREAM CG32364 & 1 other INTERGENIC
2L	7719015	2L_7719015_SNP [dm3] 2L_7719015_SNP [dm6]	T	C	6.378e^-5	0.863	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
2L	12175935	2L_12175935_DEL [dm3] 2L_12175935_DEL [dm6]	ATATAT	G	6.389e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2R	5086534	2R_5086534_SNP [dm3] 2R_9199029_SNP [dm6]	G	A	6.401e^-5	0.863	INTRON unpg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22472745	3R_22472745_DEL [dm3] 3R_26647023_DEL [dm6]	GTGTA	G	6.495e^-5	0.863	UTR_3_PRIME beat-VII
3L	20584504	3L_20584504_SNP [dm3] 3L_20591404_SNP [dm6]	A	G	6.502e^-5	0.863	INTERGENIC
3L	14859568	3L_14859568_SNP [dm3] 3L_14866468_SNP [dm6]	T	C	6.561e^-5	0.863	SYNONYMOUS_CODING CG17839
2L	12175943	2L_12175943_SNP [dm3] 2L_12175943_SNP [dm6]	T	G	6.704e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2R	14539941	2R_14539941_SNP [dm3] 2R_18652436_SNP [dm6]	C	T	6.765e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19362749	X_19362749_SNP [dm3] X_19468716_SNP [dm6]	C	G	6.796e^-5	0.863	NON_SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10921647	2L_10921647_SNP [dm3] 2L_10921647_SNP [dm6]	A	T	6.807e^-5	0.863	INTRON dpr2
X	18092431	X_18092431_SNP [dm3] X_18198398_SNP [dm6]	T	G	6.814e^-5	0.863	INTRON Frq2
2L	16238980	2L_16238980_SNP [dm3] 2L_16238980_SNP [dm6]	G	A	6.818e^-5	0.863	INTRON CG42817
2R	10871465	2R_10871465_SNP [dm3] 2R_14983960_SNP [dm6]	G	A	6.836e^-5	0.863	DOWNSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	13299627	2L_13299627_SNP [dm3] 2L_13299627_SNP [dm6]	C	T	6.868e^-5	0.863	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12334096	3R_12334096_SNP [dm3] 3R_16508374_SNP [dm6]	C	A	6.923e^-5	0.863	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	8803309	3L_8803309_SNP [dm3] 3L_8810209_SNP [dm6]	G	A	6.935e^-5	0.863	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
2L	14268479	2L_14268479_SNP [dm3] 2L_14268479_SNP [dm6]	G	T	6.989e^-5	0.863	INTRON wb
3L	13367204	3L_13367204_SNP [dm3] 3L_13374104_SNP [dm6]	A	G	7.064e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3619171	2R_3619171_SNP [dm3] 2R_7731666_SNP [dm6]	C	T	7.073e^-5	0.863	INTRON CG18812
3R	12334055	3R_12334055_SNP [dm3] 3R_16508333_SNP [dm6]	C	A	7.236e^-5	0.863	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	10328828	2R_10328828_DEL [dm3] 2R_14441323_DEL [dm6]	TATCTAACTGTTG...	T	7.271e^-5	0.863	INTRON Oaz
2L	12175948	2L_12175948_DEL [dm3] 2L_12175948_DEL [dm6]	TTTATTATCTAA...	T	7.330e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3R	10217891	3R_10217891_SNP [dm3] 3R_14392169_SNP [dm6]	G	A	7.342e^-5	0.863	UTR_3_PRIME cv-c	TF binding site mE1_TFBS_zfh1
3R	13527305	3R_13527305_SNP [dm3] 3R_17701583_SNP [dm6]	T	C	7.377e^-5	0.863	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3R	21067257	3R_21067257_SNP [dm3] 3R_25241535_SNP [dm6]	G	A	7.384e^-5	0.863	UTR_3_PRIME to UPSTREAM CG11854 DOWNSTREAM to	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11687941	X_11687941_SNP [dm3] X_11793908_SNP [dm6]	T	C	7.428e^-5	0.863	SPLICE_SITE_REGION CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
2R	16472171	2R_16472171_SNP [dm3] 2R_20584666_SNP [dm6]	G	A	7.440e^-5	0.863	UPSTREAM mir-310 & 3 others DOWNSTREAM mir-2498 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1330766	3L_1330766_INS [dm3] 3L_1330766_INS [dm6]	A	AATTCATCATCTTAAATTGT...	7.547e^-5	0.863	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14268483	2L_14268483_SNP [dm3] 2L_14268483_SNP [dm6]	T	G	7.552e^-5	0.863	INTRON wb
2L	1724653	2L_1724653_SNP [dm3] 2L_1724653_SNP [dm6]	T	G	7.634e^-5	0.863	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14842361	2L_14842361_SNP [dm3] 2L_14842361_SNP [dm6]	G	T	7.690e^-5	0.863	UTR_5_PRIME CG42682 UPSTREAM CR43805
2L	10859978	2L_10859978_SNP [dm3] 2L_10859978_SNP [dm6]	T	G	7.728e^-5	0.863	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14902782	2L_14902782_SNP [dm3] 2L_14902782_SNP [dm6]	T	A	7.732e^-5	0.863	INTERGENIC
2R	14539961	2R_14539961_SNP [dm3] 2R_18652456_SNP [dm6]	A	T	7.945e^-5	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10921646	2L_10921646_SNP [dm3] 2L_10921646_SNP [dm6]	C	A	7.949e^-5	0.863	INTRON dpr2
2L	14851216	2L_14851216_SNP [dm3] 2L_14851216_SNP [dm6]	T	C	7.955e^-5	0.863	INTRON CG15279	TF binding site mE1_TFBS_bab1
2L	14912771	2L_14912771_SNP [dm3] 2L_14912771_SNP [dm6]	C	G	8.028e^-5	0.863	INTRON CG42313
2L	21760010	2L_21760010_DEL [dm3] 2L_21760010_DEL [dm6]	AA	A	8.113e^-5	0.863	INTRON CG1416
2L	12175971	2L_12175971_DEL [dm3] 2L_12175971_DEL [dm6]	TTC	T	8.164e^-5	0.863	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	14912805	2L_14912805_SNP [dm3] 2L_14912805_SNP [dm6]	A	T	8.212e^-5	0.863	INTRON CG42313
3R	9861735	3R_9861735_SNP [dm3] 3R_14036013_SNP [dm6]	A	G	8.277e^-5	0.863	UTR_5_PRIME CG9922 DOWNSTREAM CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5495479	3L_5495479_SNP [dm3] 3L_5502379_SNP [dm6]	G	C	8.398e^-5	0.863	UPSTREAM CR44519 INTERGENIC
2R	10328846	2R_10328846_INS [dm3] 2R_14441341_INS [dm6]	C	CC	8.410e^-5	0.863	INTRON Oaz
2R	12170133	2R_12170133_SNP [dm3] 2R_16282628_SNP [dm6]	C	G	8.500e^-5	0.863	SYNONYMOUS_CODING CG7755 UPSTREAM CG9068 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5443095	X_5443095_SNP [dm3] X_5549062_SNP [dm6]	C	T	8.562e^-5	0.863	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11201294	2L_11201294_SNP [dm3] 2L_11201294_SNP [dm6]	G	C	8.602e^-5	0.863	INTRON Ca-beta
2L	14912652	2L_14912652_SNP [dm3] 2L_14912652_SNP [dm6]	A	G	8.658e^-5	0.863	INTRON CG42313
2L	3664580	2L_3664580_SNP [dm3] 2L_3664580_SNP [dm6]	T	C	8.663e^-5	0.863	INTRON CG34340
2L	20990449	2L_20990449_SNP [dm3] 2L_20990449_SNP [dm6]	C	T	8.677e^-5	0.863	INTRON CG42238
2L	14268476	2L_14268476_SNP [dm3] 2L_14268476_SNP [dm6]	G	C	8.721e^-5	0.863	INTRON wb
2L	19988106	2L_19988106_SNP [dm3] 2L_19988106_SNP [dm6]	A	T	8.762e^-5	0.863	INTRON CG43861
2L	1724656	2L_1724656_SNP [dm3] 2L_1724656_SNP [dm6]	A	C	8.782e^-5	0.863	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14077456	2L_14077456_SNP [dm3] 2L_14077456_SNP [dm6]	C	A	8.913e^-5	0.863	INTRON nAChRalpha5
X	16038506	X_16038506_SNP [dm3] X_16144473_SNP [dm6]	T	A	8.997e^-5	0.863	INTRON disco-r
2R	16473708	2R_16473708_SNP [dm3] 2R_20586203_SNP [dm6]	A	C	9.032e^-5	0.863	UPSTREAM mir-991 & 1 other DOWNSTREAM Nnf1a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26936023	3R_26936023_SNP [dm3] 3R_31110301_SNP [dm6]	C	T	9.044e^-5	0.863	INTERGENIC
3L	4837480	3L_4837480_SNP [dm3] 3L_4837480_SNP [dm6]	G	A	9.046e^-5	0.863	DOWNSTREAM CG13707 INTERGENIC
2R	18914416	2R_18914416_SNP [dm3] 2R_23026893_SNP [dm6]	A	G	9.069e^-5	0.863	INTRON twi & 1 other
2L	14913503	2L_14913503_SNP [dm3] 2L_14913503_SNP [dm6]	C	G	9.092e^-5	0.863	INTRON CG42313
2L	20519839	2L_20519839_SNP [dm3] 2L_20519839_SNP [dm6]	A	T	9.177e^-5	0.863	INTERGENIC
3R	26072167	3R_26072167_SNP [dm3] 3R_30246445_SNP [dm6]	A	T	9.229e^-5	0.863	INTRON CG9733
3R	17637840	3R_17637840_SNP [dm3] 3R_21812118_SNP [dm6]	G	C	9.328e^-5	0.863	INTRON CASK
3L	8207598	3L_8207598_SNP [dm3] 3L_8214498_SNP [dm6]	C	G	9.395e^-5	0.863	UPSTREAM CG8012 DOWNSTREAM CG8006 INTERGENIC
2L	17112123	2L_17112123_SNP [dm3] 2L_17112123_SNP [dm6]	A	T	9.419e^-5	0.863	INTERGENIC
3R	9861671	3R_9861671_SNP [dm3] 3R_14035949_SNP [dm6]	T	C	9.420e^-5	0.863	UTR_5_PRIME CG9922 DOWNSTREAM CG3061	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17190888	2L_17190888_SNP [dm3] 2L_17190888_SNP [dm6]	G	A	9.438e^-5	0.863	SYNONYMOUS_CODING beat-IIIc
3R	15080582	3R_15080582_SNP [dm3] 3R_19254860_SNP [dm6]	A	C	9.518e^-5	0.863	INTERGENIC
2L	14858681	2L_14858681_SNP [dm3] 2L_14858681_SNP [dm6]	T	C	9.525e^-5	0.863	INTERGENIC
2L	12997665	2L_12997665_SNP [dm3] 2L_12997665_SNP [dm6]	T	C	9.605e^-5	0.863	INTRON CG12404
2L	11601138	2L_11601138_SNP [dm3] 2L_11601138_SNP [dm6]	A	G	9.645e^-5	0.863	INTRON kek2
2L	15053921	2L_15053921_SNP [dm3] 2L_15053921_SNP [dm6]	A	C	9.648e^-5	0.863	INTRON ck	regulatory region REDfly_CRMs
2L	20523857	2L_20523857_SNP [dm3] 2L_20523857_SNP [dm6]	A	T	9.653e^-5	0.863	INTERGENIC
2R	19287008	2R_19287008_SNP [dm3] 2R_23399485_SNP [dm6]	G	C	9.678e^-5	0.863	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12412102	2L_12412102_SNP [dm3] 2L_12412102_SNP [dm6]	C	T	9.766e^-5	0.863	INTRON vir-1
2L	10907261	2L_10907261_SNP [dm3] 2L_10907261_SNP [dm6]	G	A	9.769e^-5	0.863	SYNONYMOUS_CODING CG7309
3L	11678324	3L_11678324_SNP [dm3] 3L_11685224_SNP [dm6]	C	T	9.980e^-5	0.863	INTRON Sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19988094	2L_19988094_SNP [dm3] 2L_19988094_SNP [dm6]	T	G	1.001e^-4	0.863	INTRON CG43861
2L	14904797	2L_14904797_SNP [dm3] 2L_14904797_SNP [dm6]	G	A	1.003e^-4	0.863	INTERGENIC
2L	14959186	2L_14959186_SNP [dm3] 2L_14959186_SNP [dm6]	A	G	1.018e^-4	0.863	INTRON CG42313
2R	11799195	2R_11799195_SNP [dm3] 2R_15911690_SNP [dm6]	G	C	1.033e^-4	0.863	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14539792	2R_14539792_SNP [dm3] 2R_18652287_SNP [dm6]	A	G	1.036e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11678399	3L_11678399_SNP [dm3] 3L_11685299_SNP [dm6]	C	T	1.045e^-4	0.863	INTRON Sug	TF binding site BDTNP1_TFBS_Med
3R	23679729	3R_23679729_DEL [dm3] 3R_27854007_DEL [dm6]	AA	A	1.045e^-4	0.863	INTRON CG34353
2L	1724654	2L_1724654_SNP [dm3] 2L_1724654_SNP [dm6]	C	G	1.046e^-4	0.863	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19981741	2L_19981741_SNP [dm3] 2L_19981741_SNP [dm6]	T	C	1.053e^-4	0.863	INTRON CG43861
2L	11730933	2L_11730933_SNP [dm3] 2L_11730933_SNP [dm6]	C	A	1.058e^-4	0.863	INTERGENIC
X	9957327	X_9957327_SNP [dm3] X_10063294_SNP [dm6]	T	A	1.060e^-4	0.863	DOWNSTREAM Gr9a INTRON CG15312
3L	10513052	3L_10513052_SNP [dm3] 3L_10519952_SNP [dm6]	A	C	1.060e^-4	0.863	INTRON A2bp1
3L	11296902	3L_11296902_SNP [dm3] 3L_11303802_SNP [dm6]	A	T	1.067e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7718924	2L_7718924_SNP [dm3] 2L_7718924_SNP [dm6]	G	A	1.071e^-4	0.863	SPLICE_SITE_REGION CG13793 DOWNSTREAM CG13794 INTRON CG13793
2L	10907258	2L_10907258_SNP [dm3] 2L_10907258_SNP [dm6]	A	G	1.077e^-4	0.863	SYNONYMOUS_CODING CG7309
2R	3889776	2R_3889776_SNP [dm3] 2R_8002271_SNP [dm6]	G	C	1.082e^-4	0.863	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12485889	3L_12485889_SNP [dm3] 3L_12492789_SNP [dm6]	A	G	1.085e^-4	0.863	INTRON CG10657 EXON CR45682	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4118010	2L_4118010_SNP [dm3] 2L_4118010_SNP [dm6]	T	A	1.088e^-4	0.863	INTERGENIC
2L	3664584	2L_3664584_SNP [dm3] 2L_3664584_SNP [dm6]	A	C	1.104e^-4	0.863	INTRON CG34340
2L	3664585	2L_3664585_SNP [dm3] 2L_3664585_SNP [dm6]	T	C	1.104e^-4	0.863	INTRON CG34340
3L	1330770	3L_1330770_SNP [dm3] 3L_1330770_SNP [dm6]	T	C	1.105e^-4	0.863	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8089465	2L_8089465_DEL [dm3] 2L_8089465_DEL [dm6]	AA	A	1.121e^-4	0.863	UTR_5_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
2L	14959235	2L_14959235_SNP [dm3] 2L_14959235_SNP [dm6]	G	C	1.123e^-4	0.863	INTRON CG42313
3R	15775048	3R_15775048_SNP [dm3] 3R_19949326_SNP [dm6]	A	C	1.124e^-4	0.863	DOWNSTREAM CG4783 INTRON Hs6st
3R	17638783	3R_17638783_SNP [dm3] 3R_21813061_SNP [dm6]	T	C	1.128e^-4	0.863	INTRON CASK
3R	15775045	3R_15775045_SNP [dm3] 3R_19949323_SNP [dm6]	C	T	1.129e^-4	0.863	DOWNSTREAM CG4783 INTRON Hs6st
3R	13711604	3R_13711604_SNP [dm3] 3R_17885882_SNP [dm6]	C	T	1.132e^-4	0.863	SYNONYMOUS_CODING Rim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9863839	3R_9863839_SNP [dm3] 3R_14038117_SNP [dm6]	G	A	1.135e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8244223	3L_8244223_SNP [dm3] 3L_8251123_SNP [dm6]	C	T	1.138e^-4	0.863	INTRON Dscam4
2L	12205324	2L_12205324_SNP [dm3] 2L_12205324_SNP [dm6]	C	T	1.138e^-4	0.863	UPSTREAM aret INTRON aret
2L	9675354	2L_9675354_SNP [dm3] 2L_9675354_SNP [dm6]	G	C	1.139e^-4	0.863	INTERGENIC
2L	10323724	2L_10323724_SNP [dm3] 2L_10323724_SNP [dm6]	C	T	1.143e^-4	0.863	SYNONYMOUS_CODING CG4995 UTR_5_PRIME CG4995 UPSTREAM CG5381	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17132694	2L_17132694_SNP [dm3] 2L_17132694_SNP [dm6]	G	A	1.147e^-4	0.863	INTRON beat-IIIa & 1 other
3L	11296903	3L_11296903_SNP [dm3] 3L_11303803_SNP [dm6]	T	A	1.150e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11556693	3L_11556693_SNP [dm3] 3L_11563593_SNP [dm6]	G	A	1.154e^-4	0.863	UTR_3_PRIME CG7394 UPSTREAM CG33267 DOWNSTREAM CG7394
2R	7805458	2R_7805458_SNP [dm3] 2R_11917953_SNP [dm6]	C	T	1.154e^-4	0.863	EXON CR44305
3R	25793892	3R_25793892_SNP [dm3] 3R_29968170_SNP [dm6]	T	G	1.158e^-4	0.863	INTRON TkR99D
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	1.164e^-4	0.863	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12573500	X_12573500_SNP [dm3] X_12679467_SNP [dm6]	A	G	1.167e^-4	0.863	UTR_3_PRIME Tis11	TF binding site mE1_TFBS_sens
3R	13921445	3R_13921445_SNP [dm3] 3R_18095723_SNP [dm6]	C	T	1.169e^-4	0.863	SPLICE_SITE_REGION sr INTRON sr
2L	19946663	2L_19946663_SNP [dm3] 2L_19946663_SNP [dm6]	T	C	1.180e^-4	0.863	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	20105690	2R_20105690_DEL [dm3] 2R_24218167_DEL [dm6]	TCT	T	1.182e^-4	0.863	INTRON CG30419
2R	20105696	2R_20105696_SNP [dm3] 2R_24218173_SNP [dm6]	C	T	1.182e^-4	0.863	INTRON CG30419
2R	9150226	2R_9150226_SNP [dm3] 2R_13262721_SNP [dm6]	T	A	1.183e^-4	0.863	NON_SYNONYMOUS_CODING CG42319 UTR_5_PRIME CG42319
3L	13229673	3L_13229673_SNP [dm3] 3L_13236573_SNP [dm6]	T	C	1.185e^-4	0.863	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3471379	2L_3471379_SNP [dm3] 2L_3471379_SNP [dm6]	G	A	1.192e^-4	0.863	SYNONYMOUS_CODING CG31776	TF binding site BDTNP1_TFBS_prd
2R	8990870	2R_8990870_SNP [dm3] 2R_13103365_SNP [dm6]	G	C	1.193e^-4	0.863	UPSTREAM CG44341 INTERGENIC
3L	8241649	3L_8241649_SNP [dm3] 3L_8248549_SNP [dm6]	G	A	1.195e^-4	0.863	INTRON Dscam4
2L	3664579	2L_3664579_SNP [dm3] 2L_3664579_SNP [dm6]	G	A	1.198e^-4	0.863	INTRON CG34340
3L	8811778	3L_8811778_SNP [dm3] 3L_8818678_SNP [dm6]	G	T	1.198e^-4	0.863	INTERGENIC
3R	4411301	3R_4411301_SNP [dm3] 3R_8585579_SNP [dm6]	A	T	1.201e^-4	0.863	INTRON 5-HT2B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8242109	3L_8242109_SNP [dm3] 3L_8249009_SNP [dm6]	A	G	1.202e^-4	0.863	INTRON Dscam4
2L	12952315	2L_12952315_SNP [dm3] 2L_12952315_SNP [dm6]	C	T	1.208e^-4	0.863	INTERGENIC
3R	14936466	3R_14936466_SNP [dm3] 3R_19110744_SNP [dm6]	A	G	1.210e^-4	0.863	INTRON CG6040
2R	7131956	2R_7131956_SNP [dm3] 2R_11244451_SNP [dm6]	C	T	1.217e^-4	0.863	SYNONYMOUS_CODING CG13226 UPSTREAM CG34225	TF binding site mE1_TFBS_cad
X	19761946	X_19761946_SNP [dm3] X_19867913_SNP [dm6]	C	T	1.230e^-4	0.863	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2L	14752702	2L_14752702_SNP [dm3] 2L_14752702_SNP [dm6]	A	T	1.239e^-4	0.863	INTERGENIC
3R	7012082	3R_7012082_SNP [dm3] 3R_11186360_SNP [dm6]	T	A	1.242e^-4	0.863	INTERGENIC
2L	13214624	2L_13214624_SNP [dm3] 2L_13214624_SNP [dm6]	G	T	1.243e^-4	0.863	NON_SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14642070	2R_14642070_SNP [dm3] 2R_18754565_SNP [dm6]	C	G	1.244e^-4	0.863	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A
2L	14858690	2L_14858690_SNP [dm3] 2L_14858690_SNP [dm6]	T	C	1.245e^-4	0.863	INTERGENIC
2R	10462008	2R_10462008_SNP [dm3] 2R_14574503_SNP [dm6]	G	A	1.251e^-4	0.863	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
X	3877714	X_3877714_SNP [dm3] X_3983681_SNP [dm6]	G	T	1.267e^-4	0.863	INTERGENIC
2L	9969105	2L_9969105_SNP [dm3] 2L_9969105_SNP [dm6]	T	C	1.268e^-4	0.863	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1700983	2L_1700983_SNP [dm3] 2L_1700983_SNP [dm6]	A	C	1.270e^-4	0.863	UTR_3_PRIME chinmo
2L	15527360	2L_15527360_SNP [dm3] 2L_15527360_SNP [dm6]	C	T	1.281e^-4	0.863	INTERGENIC
2R	8147432	2R_8147432_DEL [dm3] 2R_12259927_DEL [dm6]	GGACG	G	1.284e^-4	0.863	UPSTREAM Cam INTRON Cam & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9584947	2L_9584947_SNP [dm3] 2L_9584947_SNP [dm6]	T	G	1.288e^-4	0.863	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	12176186	2L_12176186_SNP [dm3] 2L_12176186_SNP [dm6]	C	T	1.289e^-4	0.863	INTRON aret & 1 other
2R	9057201	2R_9057201_SNP [dm3] 2R_13169696_SNP [dm6]	T	C	1.294e^-4	0.863	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu
X	665075	X_665075_SNP [dm3] X_771042_SNP [dm6]	G	A	1.296e^-4	0.863	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20154506	2R_20154506_SNP [dm3] 2R_24266983_SNP [dm6]	A	T	1.300e^-4	0.863	DOWNSTREAM CG13577 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6730851	2L_6730851_SNP [dm3] 2L_6730851_SNP [dm6]	G	A	1.317e^-4	0.863	UTR_3_PRIME Liprin-alpha
3R	15349428	3R_15349428_SNP [dm3] 3R_19523706_SNP [dm6]	T	A	1.319e^-4	0.863	INTRON Dys
3L	9480212	3L_9480212_SNP [dm3] 3L_9487112_SNP [dm6]	T	C	1.320e^-4	0.863	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10860498	2R_10860498_SNP [dm3] 2R_14972993_SNP [dm6]	C	A	1.321e^-4	0.863	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8249359	3L_8249359_SNP [dm3] 3L_8256259_SNP [dm6]	A	G	1.331e^-4	0.863	INTRON Dscam4
2R	18914424	2R_18914424_SNP [dm3] 2R_23026901_SNP [dm6]	T	A	1.338e^-4	0.863	INTRON twi & 1 other
2L	8089502	2L_8089502_SNP [dm3] 2L_8089502_SNP [dm6]	T	A	1.339e^-4	0.863	UTR_5_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
2L	13742440	2L_13742440_SNP [dm3] 2L_13742440_SNP [dm6]	C	T	1.343e^-4	0.863	INTERGENIC
2R	10462012	2R_10462012_SNP [dm3] 2R_14574507_SNP [dm6]	A	T	1.351e^-4	0.863	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4115063	2L_4115063_SNP [dm3] 2L_4115063_SNP [dm6]	C	G	1.358e^-4	0.863	UTR_3_PRIME ed DOWNSTREAM ed
3R	6766971	3R_6766971_SNP [dm3] 3R_10941249_SNP [dm6]	A	C	1.358e^-4	0.863	INTERGENIC
2R	3020241	2R_3020241_SNP [dm3] 2R_7132736_SNP [dm6]	C	T	1.359e^-4	0.863	UPSTREAM Cyp9b2 INTERGENIC
3R	10701633	3R_10701633_DEL [dm3] 3R_14875911_DEL [dm6]	CAAAAT	C	1.367e^-4	0.863	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8246800	3L_8246800_SNP [dm3] 3L_8253700_SNP [dm6]	C	G	1.369e^-4	0.863	INTRON Dscam4
2R	14539801	2R_14539801_SNP [dm3] 2R_18652296_SNP [dm6]	A	G	1.374e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9385450	2L_9385450_SNP [dm3] 2L_9385450_SNP [dm6]	A	G	1.381e^-4	0.863	INTRON Shawl
3L	1330636	3L_1330636_INS [dm3] 3L_1330636_INS [dm6]	C	CTAAGAACTCTTAAACGTTG...	1.383e^-4	0.863	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3890188	2R_3890188_SNP [dm3] 2R_8002683_SNP [dm6]	C	A	1.389e^-4	0.863	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10903842	3L_10903842_SNP [dm3] 3L_10910742_SNP [dm6]	T	G	1.399e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9054964	2R_9054964_SNP [dm3] 2R_13167459_SNP [dm6]	A	G	1.409e^-4	0.863	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	4303401	3R_4303401_SNP [dm3] 3R_8477679_SNP [dm6]	T	G	1.414e^-4	0.863	UPSTREAM CG45263 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
2L	13939565	2L_13939565_SNP [dm3] 2L_13939565_SNP [dm6]	C	T	1.417e^-4	0.863	INTRON Ance-3
2L	3400174	2L_3400174_SNP [dm3] 2L_3400174_SNP [dm6]	G	T	1.420e^-4	0.863	INTERGENIC
3L	16352052	3L_16352052_SNP [dm3] 3L_16358952_SNP [dm6]	G	A	1.420e^-4	0.863	INTRON CG45057	TF binding site BDTNP1_TFBS_z
3L	16352059	3L_16352059_SNP [dm3] 3L_16358959_SNP [dm6]	G	T	1.420e^-4	0.863	INTRON CG45057	TF binding site BDTNP1_TFBS_z
3R	17744666	3R_17744666_SNP [dm3] 3R_21918944_SNP [dm6]	C	T	1.427e^-4	0.863	INTERGENIC
2L	13787995	2L_13787995_SNP [dm3] 2L_13787995_SNP [dm6]	C	T	1.427e^-4	0.863	NON_SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
X	13681379	X_13681379_SNP [dm3] X_13787346_SNP [dm6]	G	A	1.429e^-4	0.863	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	9179460	3R_9179460_SNP [dm3] 3R_13353738_SNP [dm6]	C	G	1.432e^-4	0.863	SYNONYMOUS_CODING mthl12
X	4193791	X_4193791_SNP [dm3] X_4299758_SNP [dm6]	G	C	1.436e^-4	0.863	DOWNSTREAM CG12692 INTERGENIC
X	8296387	X_8296387_SNP [dm3] X_8402354_SNP [dm6]	A	G	1.438e^-4	0.863	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo
X	11687970	X_11687970_SNP [dm3] X_11793937_SNP [dm6]	T	C	1.440e^-4	0.863	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
2L	21057314	2L_21057314_SNP [dm3] 2L_21057314_SNP [dm6]	G	A	1.441e^-4	0.863	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
X	11688497	X_11688497_SNP [dm3] X_11794464_SNP [dm6]	G	T	1.449e^-4	0.863	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11800514	2R_11800514_DEL [dm3] 2R_15913009_DEL [dm6]	TT	T	1.452e^-4	0.863	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12947518	2L_12947518_SNP [dm3] 2L_12947518_SNP [dm6]	C	T	1.470e^-4	0.863	INTERGENIC
2L	21779927	2L_21779927_INS [dm3] 2L_21779927_INS [dm6]	C	ATATCGATATTAATTGCGGA...	1.482e^-4	0.863	INTRON CG31612	transposable element FlyBase
2R	19412714	2R_19412714_SNP [dm3] 2R_23525191_SNP [dm6]	G	C	1.490e^-4	0.863	NON_SYNONYMOUS_CODING mi	TF binding site mE1_TFBS_sens
3L	14121409	3L_14121409_SNP [dm3] 3L_14128309_SNP [dm6]	G	A	1.491e^-4	0.863	INTRON Sox21b
2R	11655180	2R_11655180_SNP [dm3] 2R_15767675_SNP [dm6]	T	C	1.493e^-4	0.863	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20014938	2L_20014938_DEL [dm3] 2L_20014938_DEL [dm6]	AA	A	1.496e^-4	0.863	INTRON CG43861
X	656782	X_656782_SNP [dm3] X_762749_SNP [dm6]	G	A	1.506e^-4	0.863	SYNONYMOUS_CODING RpL22 DOWNSTREAM CG5273 & 2 others EXON CR42491	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	14557987	X_14557987_SNP [dm3] X_14663954_SNP [dm6]	G	A	1.510e^-4	0.863	INTERGENIC
2R	11804086	2R_11804086_SNP [dm3] 2R_15916581_SNP [dm6]	G	A	1.511e^-4	0.863	INTRON sli EXON CR44373
X	19362836	X_19362836_SNP [dm3] X_19468803_SNP [dm6]	C	T	1.514e^-4	0.863	SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7928243	2L_7928243_SNP [dm3] 2L_7928243_SNP [dm6]	G	T	1.516e^-4	0.863	INTRON Snoo
3L	8245599	3L_8245599_SNP [dm3] 3L_8252499_SNP [dm6]	G	T	1.523e^-4	0.863	INTRON Dscam4
3L	11184302	3L_11184302_SNP [dm3] 3L_11191202_SNP [dm6]	G	C	1.535e^-4	0.863	INTRON GlcAT-P
3R	14780062	3R_14780062_SNP [dm3] 3R_18954340_SNP [dm6]	A	T	1.539e^-4	0.863	INTRON CG42613 & 1 other
3R	15349430	3R_15349430_SNP [dm3] 3R_19523708_SNP [dm6]	G	A	1.541e^-4	0.863	INTRON Dys
3L	20661845	3L_20661845_SNP [dm3] 3L_20668745_SNP [dm6]	A	T	1.542e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11205671	X_11205671_SNP [dm3] X_11311638_SNP [dm6]	C	G	1.544e^-4	0.863	UPSTREAM Ir10a INTERGENIC
2L	12407108	2L_12407108_SNP [dm3] 2L_12407108_SNP [dm6]	A	C	1.547e^-4	0.863	UTR_3_PRIME vir-1 INTRON vir-1
3L	10903836	3L_10903836_DEL [dm3] 3L_10910736_DEL [dm6]	AG	A	1.550e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12229086	2R_12229086_SNP [dm3] 2R_16341581_SNP [dm6]	C	T	1.550e^-4	0.863	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs
2L	7718936	2L_7718936_SNP [dm3] 2L_7718936_SNP [dm6]	G	A	1.551e^-4	0.863	DOWNSTREAM CG13794 INTRON CG13793
X	8278233	X_8278233_SNP [dm3] X_8384200_SNP [dm6]	T	A	1.553e^-4	0.863	INTERGENIC
3R	17505963	3R_17505963_SNP [dm3] 3R_21680241_SNP [dm6]	T	C	1.556e^-4	0.863	INTRON CG31176
3L	8247240	3L_8247240_SNP [dm3] 3L_8254140_SNP [dm6]	G	A	1.559e^-4	0.863	INTRON Dscam4
2L	3664620	2L_3664620_SNP [dm3] 2L_3664620_SNP [dm6]	G	A	1.563e^-4	0.863	INTRON CG34340
X	6138204	X_6138204_SNP [dm3] X_6244171_SNP [dm6]	A	G	1.568e^-4	0.863	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_chinmo
2L	14081373	2L_14081373_SNP [dm3] 2L_14081373_SNP [dm6]	T	C	1.570e^-4	0.863	INTRON nAChRalpha5
2R	14539983	2R_14539983_SNP [dm3] 2R_18652478_SNP [dm6]	T	C	1.572e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11856214	3L_11856214_SNP [dm3] 3L_11863114_SNP [dm6]	G	T	1.574e^-4	0.863	NON_SYNONYMOUS_CODING CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7805450	2R_7805450_SNP [dm3] 2R_11917945_SNP [dm6]	T	C	1.574e^-4	0.863	EXON CR44305
3R	15911051	3R_15911051_SNP [dm3] 3R_20085329_SNP [dm6]	C	T	1.576e^-4	0.863	INTERGENIC
2R	15071642	2R_15071642_DEL [dm3] 2R_19184137_DEL [dm6]	TT	T	1.581e^-4	0.863	INTRON hppy
2L	2960791	2L_2960791_SNP [dm3] 2L_2960791_SNP [dm6]	T	A	1.592e^-4	0.863	UTR_5_PRIME Rbp9 INTRON Rbp9
2R	7708171	2R_7708171_SNP [dm3] 2R_11820666_SNP [dm6]	G	A	1.600e^-4	0.863	INTERGENIC
3R	13038050	3R_13038050_SNP [dm3] 3R_17212328_SNP [dm6]	C	T	1.626e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12334062	3R_12334062_INS [dm3] 3R_16508340_INS [dm6]	T	TATA	1.628e^-4	0.863	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5760501	2L_5760501_SNP [dm3] 2L_5760501_SNP [dm6]	C	A	1.629e^-4	0.863	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
2L	9913344	2L_9913344_SNP [dm3] 2L_9913344_SNP [dm6]	C	T	1.631e^-4	0.863	SYNONYMOUS_CODING Srp54 UPSTREAM Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	17398829	2R_17398829_SNP [dm3] 2R_21511324_SNP [dm6]	T	C	1.638e^-4	0.863	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	9875166	3R_9875166_SNP [dm3] 3R_14049444_SNP [dm6]	C	T	1.642e^-4	0.863	INTERGENIC
X	4284586	X_4284586_SNP [dm3] X_4390553_SNP [dm6]	G	A	1.648e^-4	0.863	INTRON CR32773	TF binding site mE1_TFBS_Kr
3R	23268759	3R_23268759_SNP [dm3] 3R_27443037_SNP [dm6]	T	A	1.652e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17400431	2R_17400431_SNP [dm3] 2R_21512926_SNP [dm6]	G	A	1.653e^-4	0.863	DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4227510	2L_4227510_DEL [dm3] 2L_4227510_DEL [dm6]	AGCGTTGGGCTA...	A	1.656e^-4	0.863	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	17421603	2L_17421603_SNP [dm3] 2L_17421603_SNP [dm6]	G	A	1.659e^-4	0.863	INTRON Dif
3L	9754693	3L_9754693_SNP [dm3] 3L_9761593_SNP [dm6]	C	T	1.659e^-4	0.863	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	14269208	2L_14269208_SNP [dm3] 2L_14269208_SNP [dm6]	C	A	1.660e^-4	0.863	INTRON wb	TF binding site mE1_TFBS_sens
3L	18150421	3L_18150421_SNP [dm3] 3L_18157321_SNP [dm6]	T	C	1.666e^-4	0.863	INTRON CG13699
2L	15220265	2L_15220265_SNP [dm3] 2L_15220265_SNP [dm6]	A	T	1.668e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11811173	3R_11811173_SNP [dm3] 3R_15985451_SNP [dm6]	G	C	1.683e^-4	0.863	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17131737	2L_17131737_SNP [dm3] 2L_17131737_SNP [dm6]	A	G	1.683e^-4	0.863	INTRON beat-IIIa & 1 other
2L	10361530	2L_10361530_SNP [dm3] 2L_10361530_SNP [dm6]	C	T	1.687e^-4	0.863	SYNONYMOUS_CODING Cand1	TF binding site mE1_TFBS_cad
3R	23249334	3R_23249334_SNP [dm3] 3R_27423612_SNP [dm6]	G	T	1.689e^-4	0.863	INTRON side
2R	13159716	2R_13159716_SNP [dm3] 2R_17272211_SNP [dm6]	T	C	1.702e^-4	0.863	INTRON mbl
2R	10317941	2R_10317941_SNP [dm3] 2R_14430436_SNP [dm6]	C	T	1.702e^-4	0.863	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14539982	2R_14539982_SNP [dm3] 2R_18652477_SNP [dm6]	T	C	1.704e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9864214	3R_9864214_SNP [dm3] 3R_14038492_SNP [dm6]	A	G	1.707e^-4	0.863	INTERGENIC
2R	18914426	2R_18914426_SNP [dm3] 2R_23026903_SNP [dm6]	A	C	1.709e^-4	0.863	INTRON twi & 1 other
X	12243443	X_12243443_INS [dm3] X_12349410_INS [dm6]	G	GG	1.726e^-4	0.863	INTERGENIC
2R	3772442	2R_3772442_SNP [dm3] 2R_7884937_SNP [dm6]	C	T	1.729e^-4	0.863	INTRON Dgk
3L	2581554	3L_2581554_SNP [dm3] 3L_2581554_SNP [dm6]	G	C	1.730e^-4	0.863	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6928989	2R_6928989_SNP [dm3] 2R_11041484_SNP [dm6]	G	A	1.743e^-4	0.863	INTRON luna
2R	10540124	2R_10540124_SNP [dm3] 2R_14652619_SNP [dm6]	C	T	1.748e^-4	0.863	INTERGENIC
2R	18241647	2R_18241647_SNP [dm3] 2R_22354142_SNP [dm6]	G	C	1.750e^-4	0.863	INTRON Liprin-gamma
2L	20855688	2L_20855688_SNP [dm3] 2L_20855688_SNP [dm6]	G	C	1.759e^-4	0.863	INTRON twit	TF binding site mE1_TFBS_inv
X	13681397	X_13681397_SNP [dm3] X_13787364_SNP [dm6]	T	A	1.760e^-4	0.863	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	19761731	X_19761731_SNP [dm3] X_19867698_SNP [dm6]	C	G	1.763e^-4	0.863	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2L	9584949	2L_9584949_SNP [dm3] 2L_9584949_SNP [dm6]	T	C	1.770e^-4	0.863	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	9784473	3R_9784473_SNP [dm3] 3R_13958751_SNP [dm6]	A	G	1.772e^-4	0.863	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11727692	2L_11727692_SNP [dm3] 2L_11727692_SNP [dm6]	G	T	1.778e^-4	0.863	INTERGENIC
2L	19946660	2L_19946660_SNP [dm3] 2L_19946660_SNP [dm6]	C	A	1.781e^-4	0.863	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
X	12622506	X_12622506_DEL [dm3] X_12728473_DEL [dm6]	ACAA	A	1.790e^-4	0.863	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9050284	2R_9050284_DEL [dm3] 2R_13162779_DEL [dm6]	TCATC	T	1.798e^-4	0.863	UTR_3_PRIME Nrk DOWNSTREAM CG15870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8096493	3R_8096493_SNP [dm3] 3R_12270771_SNP [dm6]	T	A	1.801e^-4	0.863	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_inv
2L	16238987	2L_16238987_SNP [dm3] 2L_16238987_SNP [dm6]	T	C	1.805e^-4	0.863	INTRON CG42817
2R	9420896	2R_9420896_SNP [dm3] 2R_13533391_SNP [dm6]	T	A	1.808e^-4	0.863	UPSTREAM Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	16561090	2R_16561090_SNP [dm3] 2R_20673585_SNP [dm6]	A	G	1.809e^-4	0.863	DOWNSTREAM CG30152 INTERGENIC
3L	11413974	3L_11413974_SNP [dm3] 3L_11420874_SNP [dm6]	T	A	1.813e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17921930	X_17921930_SNP [dm3] X_18027897_SNP [dm6]	G	A	1.817e^-4	0.863	SYNONYMOUS_CODING CG6867 INTRON Sh
3R	18486715	3R_18486715_SNP [dm3] 3R_22660993_SNP [dm6]	A	G	1.827e^-4	0.863	INTRON CG45058
2R	20116638	2R_20116638_SNP [dm3] 2R_24229115_SNP [dm6]	G	A	1.831e^-4	0.863	SYNONYMOUS_CODING CG30419	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11192699	3R_11192699_SNP [dm3] 3R_15366977_SNP [dm6]	T	A	1.836e^-4	0.863	UPSTREAM CG34404 DOWNSTREAM CG14868 INTRON CG34404	TF binding site mE1_TFBS_chinmo
X	9949250	X_9949250_SNP [dm3] X_10055217_SNP [dm6]	T	A	1.846e^-4	0.863	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3R	24583593	3R_24583593_SNP [dm3] 3R_28757871_SNP [dm6]	G	A	1.852e^-4	0.863	SYNONYMOUS_CODING aqrs UPSTREAM CG9997
2R	8977418	2R_8977418_SNP [dm3] 2R_13089913_SNP [dm6]	T	C	1.866e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20637055	2L_20637055_SNP [dm3] 2L_20637055_SNP [dm6]	A	T	1.868e^-4	0.863	INTERGENIC	transposable element FlyBase
X	18352243	X_18352243_SNP [dm3] X_18458210_SNP [dm6]	C	A	1.869e^-4	0.863	DOWNSTREAM CG43843 INTRON CG32547
3R	13828733	3R_13828733_SNP [dm3] 3R_18003011_SNP [dm6]	A	T	1.876e^-4	0.863	INTRON cpo
X	665113	X_665113_SNP [dm3] X_771080_SNP [dm6]	A	G	1.877e^-4	0.863	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14833022	2L_14833022_SNP [dm3] 2L_14833022_SNP [dm6]	G	C	1.883e^-4	0.863	INTERGENIC
3L	11568791	3L_11568791_SNP [dm3] 3L_11575691_SNP [dm6]	T	C	1.887e^-4	0.863	INTRON CG33489
3L	13201911	3L_13201911_SNP [dm3] 3L_13208811_SNP [dm6]	C	G	1.897e^-4	0.863	EXON CR45096
2L	10204498	2L_10204498_SNP [dm3] 2L_10204498_SNP [dm6]	T	A	1.910e^-4	0.863	UPSTREAM CG34159 DOWNSTREAM CG5734 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4112858	2L_4112858_SNP [dm3] 2L_4112858_SNP [dm6]	G	A	1.916e^-4	0.863	INTRON ed
3R	24561273	3R_24561273_SNP [dm3] 3R_28735551_SNP [dm6]	T	C	1.926e^-4	0.863	DOWNSTREAM htt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17744670	3R_17744670_SNP [dm3] 3R_21918948_SNP [dm6]	A	C	1.930e^-4	0.863	INTERGENIC
2L	4222207	2L_4222207_SNP [dm3] 2L_4222207_SNP [dm6]	T	G	1.939e^-4	0.863	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	18344404	X_18344404_SNP [dm3] X_18450371_SNP [dm6]	G	A	1.941e^-4	0.863	INTRON CG32547
2R	17679106	2R_17679106_SNP [dm3] 2R_21791601_SNP [dm6]	G	A	1.944e^-4	0.863	UPSTREAM lox2 INTERGENIC
3L	8245598	3L_8245598_SNP [dm3] 3L_8252498_SNP [dm6]	T	C	1.952e^-4	0.863	INTRON Dscam4
2L	12952526	2L_12952526_SNP [dm3] 2L_12952526_SNP [dm6]	A	T	1.961e^-4	0.863	INTERGENIC
2L	3475649	2L_3475649_SNP [dm3] 2L_3475649_SNP [dm6]	C	T	1.970e^-4	0.863	UPSTREAM CR43928 DOWNSTREAM pgant4 EXON CR45372	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
3L	13217577	3L_13217577_SNP [dm3] 3L_13224477_SNP [dm6]	C	G	1.971e^-4	0.863	INTERGENIC
2R	16320544	2R_16320544_SNP [dm3] 2R_20433039_SNP [dm6]	A	G	1.973e^-4	0.863	INTRON CG12484
3L	18150359	3L_18150359_SNP [dm3] 3L_18157259_SNP [dm6]	G	A	1.977e^-4	0.863	INTRON CG13699
2L	20854656	2L_20854656_SNP [dm3] 2L_20854656_SNP [dm6]	A	G	1.979e^-4	0.863	INTRON twit
2L	12952551	2L_12952551_SNP [dm3] 2L_12952551_SNP [dm6]	A	G	1.986e^-4	0.863	INTERGENIC
2L	6747858	2L_6747858_SNP [dm3] 2L_6747858_SNP [dm6]	C	A	1.988e^-4	0.863	UTR_5_PRIME CG44271 INTRON CG11221
2R	19017650	2R_19017650_SNP [dm3] 2R_23130127_SNP [dm6]	A	G	2.017e^-4	0.863	UTR_5_PRIME CG3215
2L	9675393	2L_9675393_INS [dm3] 2L_9675393_INS [dm6]	T	TGTAATATGTA...	2.018e^-4	0.863	INTERGENIC
2L	10323980	2L_10323980_SNP [dm3] 2L_10323980_SNP [dm6]	T	G	2.018e^-4	0.863	NON_SYNONYMOUS_CODING CG4995 UPSTREAM CG5381
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	2.021e^-4	0.863	INTRON VAChT & 1 other
2L	758315	2L_758315_SNP [dm3] 2L_758315_SNP [dm6]	C	A	2.031e^-4	0.863	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	920946	2L_920946_SNP [dm3] 2L_920946_SNP [dm6]	T	C	2.036e^-4	0.863	INTERGENIC
3L	10608599	3L_10608599_SNP [dm3] 3L_10615499_SNP [dm6]	T	A	2.038e^-4	0.863	INTERGENIC
2L	20628733	2L_20628733_SNP [dm3] 2L_20628733_SNP [dm6]	A	G	2.045e^-4	0.863	INTERGENIC
2L	21057300	2L_21057300_SNP [dm3] 2L_21057300_SNP [dm6]	T	G	2.046e^-4	0.863	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
3L	11413947	3L_11413947_SNP [dm3] 3L_11420847_SNP [dm6]	G	C	2.050e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10267966	3L_10267966_SNP [dm3] 3L_10274866_SNP [dm6]	A	G	2.063e^-4	0.863	DOWNSTREAM Or67d INTERGENIC
2L	19987445	2L_19987445_SNP [dm3] 2L_19987445_SNP [dm6]	C	A	2.068e^-4	0.863	INTRON CG43861
2L	20855716	2L_20855716_INS [dm3] 2L_20855716_INS [dm6]	T	TAATT	2.071e^-4	0.863	INTRON twit	TF binding site mE1_TFBS_inv
3L	4138089	3L_4138089_SNP [dm3] 3L_4138089_SNP [dm6]	C	T	2.080e^-4	0.863	SYNONYMOUS_CODING Rop UPSTREAM Ras64B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8245613	3L_8245613_SNP [dm3] 3L_8252513_SNP [dm6]	G	T	2.081e^-4	0.863	INTRON Dscam4
3R	21076124	3R_21076124_SNP [dm3] 3R_25250402_SNP [dm6]	C	T	2.092e^-4	0.863	SYNONYMOUS_CODING Nup358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4719002	2L_4719002_SNP [dm3] 2L_4719002_SNP [dm6]	C	T	2.092e^-4	0.863	INTRON CG34351
2R	4172682	2R_4172682_SNP [dm3] 2R_8285177_SNP [dm6]	T	G	2.100e^-4	0.863	INTERGENIC
2L	20855850	2L_20855850_SNP [dm3] 2L_20855850_SNP [dm6]	C	A	2.101e^-4	0.863	INTRON twit	TF binding site mE1_TFBS_inv
3L	11413984	3L_11413984_SNP [dm3] 3L_11420884_SNP [dm6]	T	C	2.104e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2953140	2R_2953140_SNP [dm3] 2R_7065635_SNP [dm6]	C	A	2.116e^-4	0.863	INTRON Tsp42Er
2R	2953141	2R_2953141_SNP [dm3] 2R_7065636_SNP [dm6]	A	G	2.116e^-4	0.863	INTRON Tsp42Er
2R	19920866	2R_19920866_SNP [dm3] 2R_24033343_SNP [dm6]	G	A	2.125e^-4	0.863	SYNONYMOUS_CODING Chi UPSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	2580406	3L_2580406_SNP [dm3] 3L_2580406_SNP [dm6]	G	A	2.128e^-4	0.863	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18914524	2R_18914524_SNP [dm3] 2R_23027001_SNP [dm6]	C	T	2.132e^-4	0.863	INTRON twi & 1 other
2L	14268362	2L_14268362_SNP [dm3] 2L_14268362_SNP [dm6]	A	T	2.138e^-4	0.863	INTRON wb
2L	15534470	2L_15534470_SNP [dm3] 2L_15534470_SNP [dm6]	A	C	2.139e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	20418994	3L_20418994_SNP [dm3] 3L_20425894_SNP [dm6]	A	G	2.142e^-4	0.863	SYNONYMOUS_CODING CG5282 DOWNSTREAM CG5274	TF binding site mE1_TFBS_chinmo
2L	12555283	2L_12555283_SNP [dm3] 2L_12555283_SNP [dm6]	T	C	2.143e^-4	0.863	INTERGENIC
2L	7075088	2L_7075088_SNP [dm3] 2L_7075088_SNP [dm6]	A	G	2.163e^-4	0.863	INTRON Pvf2
3L	7715483	3L_7715483_SNP [dm3] 3L_7722383_SNP [dm6]	C	T	2.168e^-4	0.863	NON_SYNONYMOUS_CODING CG7457 DOWNSTREAM CG12262 INTRON CG32373
3L	11413977	3L_11413977_SNP [dm3] 3L_11420877_SNP [dm6]	T	A	2.171e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8461781	2L_8461781_SNP [dm3] 2L_8461781_SNP [dm6]	G	A	2.175e^-4	0.863	INTRON fu12
3L	11413969	3L_11413969_SNP [dm3] 3L_11420869_SNP [dm6]	A	T	2.183e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16388915	3R_16388915_SNP [dm3] 3R_20563193_SNP [dm6]	G	A	2.184e^-4	0.863	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7710377	2R_7710377_SNP [dm3] 2R_11822872_SNP [dm6]	G	A	2.188e^-4	0.863	INTERGENIC
3L	8247171	3L_8247171_SNP [dm3] 3L_8254071_SNP [dm6]	G	A	2.193e^-4	0.863	INTRON Dscam4
X	11688495	X_11688495_SNP [dm3] X_11794462_SNP [dm6]	T	C	2.195e^-4	0.863	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4529288	3L_4529288_SNP [dm3] 3L_4529288_SNP [dm6]	A	C	2.201e^-4	0.863	INTRON Tie
3L	8249600	3L_8249600_SNP [dm3] 3L_8256500_SNP [dm6]	G	A	2.203e^-4	0.863	INTRON Dscam4
X	2717265	X_2717265_SNP [dm3] X_2823232_SNP [dm6]	G	T	2.204e^-4	0.863	INTRON kirre
3R	24597672	3R_24597672_SNP [dm3] 3R_28771950_SNP [dm6]	C	A	2.211e^-4	0.863	INTERGENIC
2R	16597018	2R_16597018_SNP [dm3] 2R_20709513_SNP [dm6]	T	A	2.222e^-4	0.863	INTRON dpr
3L	10571811	3L_10571811_SNP [dm3] 3L_10578711_SNP [dm6]	T	C	2.227e^-4	0.863	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8240884	3L_8240884_SNP [dm3] 3L_8247784_SNP [dm6]	C	T	2.229e^-4	0.863	INTRON Dscam4
X	10841341	X_10841341_SNP [dm3] X_10947308_SNP [dm6]	T	A	2.243e^-4	0.863	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	16472149	2R_16472149_SNP [dm3] 2R_20584644_SNP [dm6]	A	T	2.248e^-4	0.863	UPSTREAM mir-310 & 3 others DOWNSTREAM mir-2498 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13708877	2L_13708877_SNP [dm3] 2L_13708877_SNP [dm6]	C	T	2.248e^-4	0.863	SYNONYMOUS_CODING CG7311 INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21770609	2L_21770609_SNP [dm3] 2L_21770609_SNP [dm6]	A	T	2.250e^-4	0.863	INTRON CG31612
2L	16276661	2L_16276661_SNP [dm3] 2L_16276661_SNP [dm6]	G	T	2.252e^-4	0.863	INTRON crp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11413985	3L_11413985_SNP [dm3] 3L_11420885_SNP [dm6]	A	T	2.257e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8006029	2L_8006029_SNP [dm3] 2L_8006029_SNP [dm6]	C	T	2.263e^-4	0.863	INTRON Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11810388	3R_11810388_SNP [dm3] 3R_15984666_SNP [dm6]	T	C	2.267e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	13340621	2L_13340621_SNP [dm3] 2L_13340621_SNP [dm6]	A	G	2.269e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7216454	2L_7216454_SNP [dm3] 2L_7216454_SNP [dm6]	T	A	2.271e^-4	0.863	INTRON CG13784
3R	17051512	3R_17051512_SNP [dm3] 3R_21225790_SNP [dm6]	T	A	2.277e^-4	0.863	SYNONYMOUS_CODING Nelf-A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8727234	3L_8727234_SNP [dm3] 3L_8734134_SNP [dm6]	C	A	2.281e^-4	0.863	INTRON Prm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1390870	X_1390870_SNP [dm3] X_1496837_SNP [dm6]	A	C	2.286e^-4	0.863	UPSTREAM Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
2L	4116582	2L_4116582_SNP [dm3] 2L_4116582_SNP [dm6]	C	G	2.301e^-4	0.863	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	21760062	2L_21760062_SNP [dm3] 2L_21760062_SNP [dm6]	G	T	2.307e^-4	0.863	INTRON CG1416
2L	1752187	2L_1752187_SNP [dm3] 2L_1752187_SNP [dm6]	T	C	2.316e^-4	0.863	UPSTREAM CG17648 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10762233	2L_10762233_SNP [dm3] 2L_10762233_SNP [dm6]	A	T	2.325e^-4	0.863	SYNONYMOUS_CODING CG6495
3L	9429755	3L_9429755_SNP [dm3] 3L_9436655_SNP [dm6]	G	C	2.328e^-4	0.863	NON_SYNONYMOUS_CODING MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12695810	2L_12695810_SNP [dm3] 2L_12695810_SNP [dm6]	T	G	2.331e^-4	0.863	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
3L	7993374	3L_7993374_SNP [dm3] 3L_8000274_SNP [dm6]	C	T	2.332e^-4	0.863	INTRON nmo
X	11705112	X_11705112_SNP [dm3] X_11811079_SNP [dm6]	C	T	2.332e^-4	0.863	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24113755	3R_24113755_SNP [dm3] 3R_28288033_SNP [dm6]	G	C	2.338e^-4	0.863	INTERGENIC
2L	19986325	2L_19986325_SNP [dm3] 2L_19986325_SNP [dm6]	T	C	2.340e^-4	0.863	INTRON CG43861
3L	20661749	3L_20661749_SNP [dm3] 3L_20668649_SNP [dm6]	A	G	2.349e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6046348	3L_6046348_SNP [dm3] 3L_6053248_SNP [dm6]	T	A	2.360e^-4	0.863	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2R	9754853	2R_9754853_SNP [dm3] 2R_13867348_SNP [dm6]	C	A	2.365e^-4	0.863	INTRON shot
2L	15740660	2L_15740660_SNP [dm3] 2L_15740660_SNP [dm6]	C	G	2.367e^-4	0.863	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11413967	3L_11413967_SNP [dm3] 3L_11420867_SNP [dm6]	C	A	2.370e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4116581	2L_4116581_SNP [dm3] 2L_4116581_SNP [dm6]	A	T	2.375e^-4	0.863	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	7749321	2L_7749321_SNP [dm3] 2L_7749321_SNP [dm6]	A	T	2.376e^-4	0.863	INTERGENIC
2L	12040696	2L_12040696_MNP [dm3] 2L_12040696_MNP [dm6]	GTGT	CGCC	2.378e^-4	0.863	UPSTREAM CG6766 DOWNSTREAM CG6785 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11688777	X_11688777_SNP [dm3] X_11794744_SNP [dm6]	T	C	2.387e^-4	0.863	INTRON CkIIbeta
3R	24692892	3R_24692892_SNP [dm3] 3R_28867170_SNP [dm6]	G	A	2.389e^-4	0.863	SYNONYMOUS_CODING spg
2L	10188812	2L_10188812_SNP [dm3] 2L_10188812_SNP [dm6]	A	G	2.391e^-4	0.863	SYNONYMOUS_CODING Sur
2L	21756747	2L_21756747_SNP [dm3] 2L_21756747_SNP [dm6]	C	A	2.397e^-4	0.863	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2R	17679109	2R_17679109_SNP [dm3] 2R_21791604_SNP [dm6]	T	C	2.398e^-4	0.863	UPSTREAM lox2 INTERGENIC
X	10841359	X_10841359_SNP [dm3] X_10947326_SNP [dm6]	C	G	2.405e^-4	0.863	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	11856648	2L_11856648_SNP [dm3] 2L_11856648_SNP [dm6]	C	G	2.407e^-4	0.863	INTRON Pde1c
2L	13299783	2L_13299783_SNP [dm3] 2L_13299783_SNP [dm6]	G	A	2.412e^-4	0.863	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3264922	3L_3264922_SNP [dm3] 3L_3264922_SNP [dm6]	C	T	2.412e^-4	0.863	INTRON ckd
2L	17636056	2L_17636056_SNP [dm3] 2L_17636056_SNP [dm6]	T	G	2.413e^-4	0.863	INTERGENIC
2L	11164527	2L_11164527_SNP [dm3] 2L_11164527_SNP [dm6]	A	G	2.415e^-4	0.863	INTRON Ca-beta
3R	26379868	3R_26379868_SNP [dm3] 3R_30554146_SNP [dm6]	C	T	2.419e^-4	0.863	DOWNSTREAM CG34155 INTRON tmod
2L	10188942	2L_10188942_SNP [dm3] 2L_10188942_SNP [dm6]	T	C	2.428e^-4	0.863	NON_SYNONYMOUS_CODING Sur DOWNSTREAM CG31874
3L	10227487	3L_10227487_SNP [dm3] 3L_10234387_SNP [dm6]	T	A	2.432e^-4	0.863	INTERGENIC
2L	13788017	2L_13788017_SNP [dm3] 2L_13788017_SNP [dm6]	G	C	2.434e^-4	0.863	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
2R	17852643	2R_17852643_INS [dm3] 2R_21965138_INS [dm6]	G	GG	2.434e^-4	0.863	INTRON ppk9
3L	22881517	3L_22881517_SNP [dm3] 3L_22888417_SNP [dm6]	G	A	2.438e^-4	0.863	UPSTREAM slif INTRON slif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15775088	3R_15775088_SNP [dm3] 3R_19949366_SNP [dm6]	C	A	2.440e^-4	0.863	DOWNSTREAM CG4783 INTRON Hs6st
3R	13831862	3R_13831862_SNP [dm3] 3R_18006140_SNP [dm6]	C	T	2.451e^-4	0.863	INTRON cpo
2L	11723843	2L_11723843_SNP [dm3] 2L_11723843_SNP [dm6]	G	A	2.458e^-4	0.863	INTERGENIC
2R	14587993	2R_14587993_SNP [dm3] 2R_18700488_SNP [dm6]	A	G	2.458e^-4	0.863	SYNONYMOUS_CODING Sik3
2L	8698994	2L_8698994_SNP [dm3] 2L_8698994_SNP [dm6]	T	C	2.472e^-4	0.863	UTR_5_PRIME Hnf4 INTRON Hnf4
2L	7718933	2L_7718933_SNP [dm3] 2L_7718933_SNP [dm6]	T	C	2.472e^-4	0.863	DOWNSTREAM CG13794 INTRON CG13793
3R	24975875	3R_24975875_SNP [dm3] 3R_29150153_SNP [dm6]	G	A	2.480e^-4	0.863	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo
3R	13435786	3R_13435786_SNP [dm3] 3R_17610064_SNP [dm6]	A	G	2.486e^-4	0.863	SYNONYMOUS_CODING CG14329 DOWNSTREAM Edg91
2L	9097585	2L_9097585_SNP [dm3] 2L_9097585_SNP [dm6]	A	G	2.486e^-4	0.863	UTR_5_PRIME CG31609
2L	17421687	2L_17421687_SNP [dm3] 2L_17421687_SNP [dm6]	G	T	2.487e^-4	0.863	INTRON Dif
2L	22004857	2L_22004857_SNP [dm3] 2L_22004857_SNP [dm6]	C	T	2.492e^-4	0.863	INTERGENIC	transposable element FlyBase
2L	6625315	2L_6625315_SNP [dm3] 2L_6625315_SNP [dm6]	G	A	2.495e^-4	0.863	UTR_3_PRIME CG34345 & 1 other	TF binding site mE1_TFBS_inv
3R	25006075	3R_25006075_SNP [dm3] 3R_29180353_SNP [dm6]	A	G	2.501e^-4	0.863	INTRON CG14509
2L	20376043	2L_20376043_SNP [dm3] 2L_20376043_SNP [dm6]	A	G	2.503e^-4	0.863	DOWNSTREAM CG16798 INTERGENIC
X	12622505	X_12622505_SNP [dm3] X_12728472_SNP [dm6]	A	T	2.506e^-4	0.863	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9076710	3R_9076710_SNP [dm3] 3R_13250988_SNP [dm6]	C	T	2.507e^-4	0.863	INTRON Ace
X	11814642	X_11814642_SNP [dm3] X_11920609_SNP [dm6]	A	G	2.507e^-4	0.863	UPSTREAM CR43157 & 1 other INTRON Sclp
3L	14042961	3L_14042961_SNP [dm3] 3L_14049861_SNP [dm6]	A	T	2.516e^-4	0.863	UTR_5_PRIME blue	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13222727	2L_13222727_SNP [dm3] 2L_13222727_SNP [dm6]	A	C	2.517e^-4	0.863	UTR_5_PRIME CG16812 UPSTREAM Ski6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13335057	2L_13335057_SNP [dm3] 2L_13335057_SNP [dm6]	C	T	2.518e^-4	0.863	INTERGENIC
X	19754229	X_19754229_SNP [dm3] X_19860196_SNP [dm6]	G	T	2.531e^-4	0.863	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	921008	2L_921008_INS [dm3] 2L_921008_INS [dm6]	A	AAATA	2.531e^-4	0.863	INTERGENIC
2L	14832440	2L_14832440_SNP [dm3] 2L_14832440_SNP [dm6]	G	A	2.539e^-4	0.863	INTERGENIC
2R	14542987	2R_14542987_SNP [dm3] 2R_18655482_SNP [dm6]	A	T	2.541e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_prd
3R	13031001	3R_13031001_SNP [dm3] 3R_17205279_SNP [dm6]	G	T	2.545e^-4	0.863	INTERGENIC
2R	10328928	2R_10328928_SNP [dm3] 2R_14441423_SNP [dm6]	A	G	2.548e^-4	0.863	INTRON Oaz
2R	3890760	2R_3890760_SNP [dm3] 2R_8003255_SNP [dm6]	A	G	2.555e^-4	0.863	INTERGENIC
2R	18856052	2R_18856052_SNP [dm3] 2R_22968529_SNP [dm6]	A	G	2.563e^-4	0.863	INTERGENIC
3R	8901996	3R_8901996_SNP [dm3] 3R_13076274_SNP [dm6]	C	T	2.564e^-4	0.863	SYNONYMOUS_CODING sim	TF binding site BDTNP1_TFBS_dl
3L	8204483	3L_8204483_SNP [dm3] 3L_8211383_SNP [dm6]	G	A	2.565e^-4	0.863	UPSTREAM CG32364 & 1 other INTERGENIC
3R	24443909	3R_24443909_SNP [dm3] 3R_28618187_SNP [dm6]	G	C	2.567e^-4	0.863	INTRON CG10011
3R	17051713	3R_17051713_SNP [dm3] 3R_21225991_SNP [dm6]	A	G	2.573e^-4	0.863	SYNONYMOUS_CODING Nelf-A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11413955	3L_11413955_SNP [dm3] 3L_11420855_SNP [dm6]	G	T	2.598e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11265306	3L_11265306_SNP [dm3] 3L_11272206_SNP [dm6]	G	A	2.608e^-4	0.863	INTERGENIC
2L	14902364	2L_14902364_SNP [dm3] 2L_14902364_SNP [dm6]	T	A	2.608e^-4	0.863	INTERGENIC
2R	9272701	2R_9272701_SNP [dm3] 2R_13385196_SNP [dm6]	G	T	2.610e^-4	0.863	INTERGENIC
3L	1330759	3L_1330759_SNP [dm3] 3L_1330759_SNP [dm6]	T	A	2.613e^-4	0.863	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26445012	3R_26445012_SNP [dm3] 3R_30619290_SNP [dm6]	C	G	2.616e^-4	0.863	UTR_5_PRIME CG44954
2L	3664629	2L_3664629_SNP [dm3] 2L_3664629_SNP [dm6]	A	T	2.617e^-4	0.863	INTRON CG34340
3L	1338524	3L_1338524_SNP [dm3] 3L_1338524_SNP [dm6]	T	A	2.619e^-4	0.863	NON_SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11413953	3L_11413953_SNP [dm3] 3L_11420853_SNP [dm6]	T	G	2.623e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13459801	3R_13459801_SNP [dm3] 3R_17634079_SNP [dm6]	A	T	2.625e^-4	0.863	INTRON CG43175
2R	15071660	2R_15071660_SNP [dm3] 2R_19184155_SNP [dm6]	G	T	2.629e^-4	0.863	INTRON hppy
2L	20322385	2L_20322385_SNP [dm3] 2L_20322385_SNP [dm6]	G	A	2.631e^-4	0.863	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	564710	2L_564710_SNP [dm3] 2L_564710_SNP [dm6]	A	C	2.632e^-4	0.863	NON_SYNONYMOUS_CODING CG2794 UPSTREAM CG11835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19143670	2R_19143670_SNP [dm3] 2R_23256147_SNP [dm6]	A	C	2.638e^-4	0.863	INTERGENIC
3L	3960545	3L_3960545_SNP [dm3] 3L_3960545_SNP [dm6]	G	T	2.640e^-4	0.863	UPSTREAM CG12605 INTRON CG12605
3R	13153120	3R_13153120_SNP [dm3] 3R_17327398_SNP [dm6]	G	C	2.643e^-4	0.863	INTRON beat-IIa
3R	25006078	3R_25006078_SNP [dm3] 3R_29180356_SNP [dm6]	A	G	2.646e^-4	0.863	INTRON CG14509
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	2.657e^-4	0.863	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	8934114	2L_8934114_SNP [dm3] 2L_8934114_SNP [dm6]	C	T	2.658e^-4	0.863	START_GAINED Tsp29Fa UTR_5_PRIME Tsp29Fa UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
2R	10328924	2R_10328924_INS [dm3] 2R_14441419_INS [dm6]	C	CATATCC	2.661e^-4	0.863	INTRON Oaz
3R	15911048	3R_15911048_SNP [dm3] 3R_20085326_SNP [dm6]	C	A	2.664e^-4	0.863	INTERGENIC
3R	13038041	3R_13038041_SNP [dm3] 3R_17212319_SNP [dm6]	T	C	2.666e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13038059	3R_13038059_SNP [dm3] 3R_17212337_SNP [dm6]	T	G	2.666e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15022838	2L_15022838_DEL [dm3] 2L_15022838_DEL [dm6]	ATAAAAC	A	2.669e^-4	0.863	INTRON GABA-B-R1
2L	14902383	2L_14902383_SNP [dm3] 2L_14902383_SNP [dm6]	A	T	2.670e^-4	0.863	INTERGENIC
2L	14902384	2L_14902384_SNP [dm3] 2L_14902384_SNP [dm6]	T	A	2.670e^-4	0.863	INTERGENIC
3L	11413965	3L_11413965_INS [dm3] 3L_11420865_INS [dm6]	A	ACTTGTTA	2.672e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8139804	2R_8139804_SNP [dm3] 2R_12252299_SNP [dm6]	C	T	2.674e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6264969	2R_6264969_SNP [dm3] 2R_10377464_SNP [dm6]	T	G	2.686e^-4	0.863	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
2R	8654877	2R_8654877_SNP [dm3] 2R_12767372_SNP [dm6]	G	T	2.686e^-4	0.863	INTERGENIC
3L	4840522	3L_4840522_SNP [dm3] 3L_4840522_SNP [dm6]	G	C	2.687e^-4	0.863	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9052431	2R_9052431_SNP [dm3] 2R_13164926_SNP [dm6]	T	C	2.695e^-4	0.863	UPSTREAM CG15870 INTRON GLaz
2R	9052437	2R_9052437_SNP [dm3] 2R_13164932_SNP [dm6]	A	G	2.695e^-4	0.863	UPSTREAM CG15870 INTRON GLaz
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	2.699e^-4	0.863	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2L	1886023	2L_1886023_SNP [dm3] 2L_1886023_SNP [dm6]	A	G	2.705e^-4	0.863	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9204026	2L_9204026_SNP [dm3] 2L_9204026_SNP [dm6]	G	A	2.707e^-4	0.863	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20424864	2L_20424864_SNP [dm3] 2L_20424864_SNP [dm6]	C	T	2.707e^-4	0.863	UPSTREAM CG15130 INTERGENIC	TF binding site mE1_TFBS_cad
3L	4974019	3L_4974019_SNP [dm3] 3L_4974019_SNP [dm6]	A	G	2.707e^-4	0.863	INTRON Con
2L	15531109	2L_15531109_SNP [dm3] 2L_15531109_SNP [dm6]	C	T	2.712e^-4	0.863	INTERGENIC
3L	12660311	3L_12660311_SNP [dm3] 3L_12667211_SNP [dm6]	G	T	2.714e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7214854	2L_7214854_SNP [dm3] 2L_7214854_SNP [dm6]	G	A	2.717e^-4	0.863	INTRON CG13784
3L	16905597	3L_16905597_SNP [dm3] 3L_16912497_SNP [dm6]	G	A	2.717e^-4	0.863	INTRON Lmpt
3L	16971605	3L_16971605_SNP [dm3] 3L_16978505_SNP [dm6]	T	A	2.726e^-4	0.863	INTRON Exn	TF binding site mE1_TFBS_inv
2L	16434348	2L_16434348_SNP [dm3] 2L_16434348_SNP [dm6]	T	A	2.731e^-4	0.863	INTRON CG5888
X	16322014	X_16322014_DEL [dm3] X_16427981_DEL [dm6]	AA	A	2.740e^-4	0.863	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_zfh1
2L	18163356	2L_18163356_SNP [dm3] 2L_18163356_SNP [dm6]	G	A	2.743e^-4	0.863	INTRON CG42750
3L	8248143	3L_8248143_SNP [dm3] 3L_8255043_SNP [dm6]	A	T	2.747e^-4	0.863	INTRON Dscam4
2L	20515537	2L_20515537_SNP [dm3] 2L_20515537_SNP [dm6]	A	T	2.761e^-4	0.863	DOWNSTREAM CR45702 INTERGENIC
3L	6046368	3L_6046368_DEL [dm3] 3L_6053268_DEL [dm6]	CT	G	2.763e^-4	0.863	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
X	11087886	X_11087886_SNP [dm3] X_11193853_SNP [dm6]	T	C	2.768e^-4	0.863	DOWNSTREAM CR44765 INTERGENIC
X	686669	X_686669_SNP [dm3] X_792636_SNP [dm6]	A	T	2.768e^-4	0.863	UPSTREAM CG16989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12853941	X_12853941_SNP [dm3] X_12959908_SNP [dm6]	C	G	2.778e^-4	0.863	NON_SYNONYMOUS_CODING CG32642
2L	16537600	2L_16537600_SNP [dm3] 2L_16537600_SNP [dm6]	G	C	2.780e^-4	0.863	INTERGENIC
2R	18243003	2R_18243003_SNP [dm3] 2R_22355498_SNP [dm6]	C	T	2.781e^-4	0.863	UPSTREAM Liprin-gamma INTRON Liprin-gamma
3L	11678025	3L_11678025_SNP [dm3] 3L_11684925_SNP [dm6]	A	C	2.785e^-4	0.863	INTRON Sug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10701892	3L_10701892_SNP [dm3] 3L_10708792_SNP [dm6]	A	G	2.787e^-4	0.863	INTERGENIC
X	3353645	X_3353645_SNP [dm3] X_3459612_SNP [dm6]	G	A	2.789e^-4	0.863	SYNONYMOUS_CODING CG16782 UPSTREAM CG10801 INTRON CR44999
2L	14844506	2L_14844506_SNP [dm3] 2L_14844506_SNP [dm6]	T	A	2.790e^-4	0.863	DOWNSTREAM CG15279 INTERGENIC
2R	15769182	2R_15769182_SNP [dm3] 2R_19881677_SNP [dm6]	T	A	2.794e^-4	0.863	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11802407	2R_11802407_SNP [dm3] 2R_15914902_SNP [dm6]	T	A	2.795e^-4	0.863	INTRON sli
X	9957329	X_9957329_SNP [dm3] X_10063296_SNP [dm6]	T	C	2.798e^-4	0.863	DOWNSTREAM Gr9a INTRON CG15312
X	10647025	X_10647025_SNP [dm3] X_10752992_SNP [dm6]	T	C	2.804e^-4	0.863	INTRON Rph
2L	4943473	2L_4943473_SNP [dm3] 2L_4943473_SNP [dm6]	A	G	2.811e^-4	0.863	SYNONYMOUS_CODING CG14044 DOWNSTREAM mRpL24
2L	20628722	2L_20628722_SNP [dm3] 2L_20628722_SNP [dm6]	A	C	2.814e^-4	0.863	INTERGENIC
2L	13219079	2L_13219079_SNP [dm3] 2L_13219079_SNP [dm6]	G	A	2.818e^-4	0.863	SYNONYMOUS_CODING CG9426 UPSTREAM CG5705	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23344705	3R_23344705_SNP [dm3] 3R_27518983_SNP [dm6]	A	G	2.821e^-4	0.863	INTERGENIC
3R	26012590	3R_26012590_SNP [dm3] 3R_30186868_SNP [dm6]	A	G	2.832e^-4	0.863	INTRON CG9747
2L	15006449	2L_15006449_SNP [dm3] 2L_15006449_SNP [dm6]	T	C	2.845e^-4	0.863	SYNONYMOUS_CODING dyn-p25 DOWNSTREAM l_2_35Be	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14679059	X_14679059_SNP [dm3] X_14785026_SNP [dm6]	G	T	2.850e^-4	0.863	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2R	7426837	2R_7426837_SNP [dm3] 2R_11539332_SNP [dm6]	T	C	2.857e^-4	0.863	INTERGENIC
2L	17680903	2L_17680903_SNP [dm3] 2L_17680903_SNP [dm6]	T	C	2.858e^-4	0.863	INTRON CadN
3R	13485703	3R_13485703_SNP [dm3] 3R_17659981_SNP [dm6]	C	T	2.861e^-4	0.863	INTRON CG14322
3L	11552443	3L_11552443_SNP [dm3] 3L_11559343_SNP [dm6]	G	T	2.861e^-4	0.863	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
2R	9778368	2R_9778368_SNP [dm3] 2R_13890863_SNP [dm6]	C	T	2.862e^-4	0.863	SYNONYMOUS_CODING shot INTRON shot
2L	10942563	2L_10942563_SNP [dm3] 2L_10942563_SNP [dm6]	G	C	2.863e^-4	0.863	DOWNSTREAM CR44493 INTRON dpr2 EXON CR44492
3L	10373450	3L_10373450_SNP [dm3] 3L_10380350_SNP [dm6]	G	A	2.876e^-4	0.863	INTERGENIC
2L	22067152	2L_22067152_SNP [dm3] 2L_22067152_SNP [dm6]	C	G	2.879e^-4	0.863	EXON CR31700
2L	20855685	2L_20855685_SNP [dm3] 2L_20855685_SNP [dm6]	C	T	2.880e^-4	0.863	INTRON twit	TF binding site mE1_TFBS_inv
2R	17444688	2R_17444688_SNP [dm3] 2R_21557183_SNP [dm6]	C	T	2.882e^-4	0.863	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10783890	3L_10783890_SNP [dm3] 3L_10790790_SNP [dm6]	G	A	2.890e^-4	0.863	DOWNSTREAM CR44545 INTERGENIC
X	6974243	X_6974243_SNP [dm3] X_7080210_SNP [dm6]	T	C	2.894e^-4	0.863	INTRON Sxl
2R	16042615	2R_16042615_INS [dm3] 2R_20155110_INS [dm6]	A	AA	2.900e^-4	0.863	INTERGENIC
2L	7701069	2L_7701069_SNP [dm3] 2L_7701069_SNP [dm6]	C	A	2.902e^-4	0.863	INTRON Tep2	TF binding site mE1_TFBS_Trl
3R	11811099	3R_11811099_SNP [dm3] 3R_15985377_SNP [dm6]	A	C	2.902e^-4	0.863	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9967283	2R_9967283_SNP [dm3] 2R_14079778_SNP [dm6]	A	G	2.910e^-4	0.863	INTRON Prosap
2R	14539917	2R_14539917_SNP [dm3] 2R_18652412_SNP [dm6]	A	G	2.911e^-4	0.863	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16378445	2R_16378445_INS [dm3] 2R_20490940_INS [dm6]	G	AA	2.925e^-4	0.863	EXON CR44643
3L	10701652	3L_10701652_SNP [dm3] 3L_10708552_SNP [dm6]	C	T	2.927e^-4	0.863	INTERGENIC
2L	12690367	2L_12690367_SNP [dm3] 2L_12690367_SNP [dm6]	T	G	2.931e^-4	0.863	UTR_3_PRIME CG5525	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	10840366	X_10840366_SNP [dm3] X_10946333_SNP [dm6]	T	C	2.934e^-4	0.863	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	3464653	2L_3464653_SNP [dm3] 2L_3464653_SNP [dm6]	T	C	2.934e^-4	0.863	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14357184	3L_14357184_INS [dm3] 3L_14364084_INS [dm6]	T	TCCTTTAAT	2.942e^-4	0.863	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	14357199	3L_14357199_SNP [dm3] 3L_14364099_SNP [dm6]	C	A	2.942e^-4	0.863	INTRON fz	TF binding site BDTNP1_TFBS_da
2R	6437502	2R_6437502_SNP [dm3] 2R_10549997_SNP [dm6]	T	C	2.946e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
2L	5657465	2L_5657465_SNP [dm3] 2L_5657465_SNP [dm6]	G	A	2.951e^-4	0.863	INTRON CG31646
3L	10701649	3L_10701649_SNP [dm3] 3L_10708549_SNP [dm6]	C	T	2.953e^-4	0.863	INTERGENIC
3R	23685211	3R_23685211_SNP [dm3] 3R_27859489_SNP [dm6]	T	C	2.955e^-4	0.863	INTRON CG34353
3R	22946253	3R_22946253_SNP [dm3] 3R_27120531_SNP [dm6]	T	C	2.965e^-4	0.863	SYNONYMOUS_CODING CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7759426	2L_7759426_SNP [dm3] 2L_7759426_SNP [dm6]	G	C	2.965e^-4	0.863	INTRON CG7196
2L	917231	2L_917231_SNP [dm3] 2L_917231_SNP [dm6]	C	T	2.966e^-4	0.863	SYNONYMOUS_CODING GluRIIC
X	5867658	X_5867658_SNP [dm3] X_5973625_SNP [dm6]	G	T	2.967e^-4	0.863	INTRON Grip
2L	8082112	2L_8082112_SNP [dm3] 2L_8082112_SNP [dm6]	G	A	2.974e^-4	0.863	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	4587644	X_4587644_INS [dm3] X_4693611_INS [dm6]	T	TTTCTAT	2.976e^-4	0.863	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
3R	15815340	3R_15815340_SNP [dm3] 3R_19989618_SNP [dm6]	C	A	2.980e^-4	0.863	INTRON Hs6st
3R	14936473	3R_14936473_SNP [dm3] 3R_19110751_SNP [dm6]	C	T	2.980e^-4	0.863	INTRON CG6040
2L	13230164	2L_13230164_SNP [dm3] 2L_13230164_SNP [dm6]	A	C	2.983e^-4	0.863	NON_SYNONYMOUS_CODING CG16815	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4925289	2L_4925289_SNP [dm3] 2L_4925289_SNP [dm6]	T	C	2.983e^-4	0.863	INTRON hoe1
2L	14745665	2L_14745665_SNP [dm3] 2L_14745665_SNP [dm6]	A	G	2.984e^-4	0.863	UPSTREAM CR45459 & 2 others DOWNSTREAM CG42681 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	13210290	3L_13210290_SNP [dm3] 3L_13217190_SNP [dm6]	C	T	2.985e^-4	0.863	EXON CR43914	TF binding site BDTNP1_TFBS_prd
2R	6928999	2R_6928999_SNP [dm3] 2R_11041494_SNP [dm6]	T	C	2.987e^-4	0.863	INTRON luna
3L	2016155	3L_2016155_SNP [dm3] 3L_2016155_SNP [dm6]	G	C	2.990e^-4	0.863	INTERGENIC
2L	15017786	2L_15017786_SNP [dm3] 2L_15017786_SNP [dm6]	A	C	2.994e^-4	0.863	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	672325	X_672325_INS [dm3] X_778292_INS [dm6]	A	ATGCGTCCGAA...	2.994e^-4	0.863	INTRON fz3
2L	11731161	2L_11731161_SNP [dm3] 2L_11731161_SNP [dm6]	T	C	3.001e^-4	0.863	INTERGENIC
2R	11802891	2R_11802891_SNP [dm3] 2R_15915386_SNP [dm6]	G	A	3.004e^-4	0.863	UPSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_Trl
3R	24561206	3R_24561206_SNP [dm3] 3R_28735484_SNP [dm6]	C	T	3.012e^-4	0.863	DOWNSTREAM htt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16290878	2L_16290878_SNP [dm3] 2L_16290878_SNP [dm6]	A	T	3.016e^-4	0.863	UTR_3_PRIME pkaap UPSTREAM CG17329
3L	8810107	3L_8810107_SNP [dm3] 3L_8817007_SNP [dm6]	G	A	3.023e^-4	0.863	INTERGENIC
3L	4980856	3L_4980856_SNP [dm3] 3L_4980856_SNP [dm6]	C	T	3.027e^-4	0.863	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
2L	21182773	2L_21182773_SNP [dm3] 2L_21182773_SNP [dm6]	G	T	3.042e^-4	0.863	UTR_3_PRIME Mcm10 & 1 other
2L	9491169	2L_9491169_DEL [dm3] 2L_9491169_DEL [dm6]	AA	A	3.044e^-4	0.863	DOWNSTREAM Gdi INTERGENIC
3L	13124209	3L_13124209_SNP [dm3] 3L_13131109_SNP [dm6]	A	G	3.050e^-4	0.863	INTERGENIC
2R	9052409	2R_9052409_SNP [dm3] 2R_13164904_SNP [dm6]	A	G	3.052e^-4	0.863	UPSTREAM CG15870 INTRON GLaz
3R	13831869	3R_13831869_SNP [dm3] 3R_18006147_SNP [dm6]	C	T	3.059e^-4	0.863	INTRON cpo
X	6264845	X_6264845_DEL [dm3] X_6370812_DEL [dm6]	GGG	G	3.067e^-4	0.863	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
2L	13867910	2L_13867910_SNP [dm3] 2L_13867910_SNP [dm6]	C	A	3.067e^-4	0.863	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2642434	2L_2642434_SNP [dm3] 2L_2642434_SNP [dm6]	A	G	3.069e^-4	0.863	INTERGENIC
3L	9120659	3L_9120659_SNP [dm3] 3L_9127559_SNP [dm6]	A	C	3.071e^-4	0.863	INTRON bol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9711809	2L_9711809_SNP [dm3] 2L_9711809_SNP [dm6]	T	C	3.073e^-4	0.863	UTR_3_PRIME Nckx30C UPSTREAM CG4364 DOWNSTREAM Nckx30C	TF binding site mE1_TFBS_HSA
2L	20665832	2L_20665832_INS [dm3] 2L_20665832_INS [dm6]	A	AGCATTGTCTTGCCAAGGAA...	3.076e^-4	0.863	INTRON CG31678 EXON CR45004
2L	15537538	2L_15537538_SNP [dm3] 2L_15537538_SNP [dm6]	C	G	3.079e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18486722	3R_18486722_SNP [dm3] 3R_22661000_SNP [dm6]	G	C	3.084e^-4	0.863	INTRON CG45058
X	12622489	X_12622489_DEL [dm3] X_12728456_DEL [dm6]	TAACAAGCGCTGC...	T	3.085e^-4	0.863	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24788861	3R_24788861_SNP [dm3] 3R_28963139_SNP [dm6]	T	G	3.105e^-4	0.863	INTRON CG14521
2R	20408424	2R_20408424_SNP [dm3] 2R_24520901_SNP [dm6]	C	T	3.106e^-4	0.863	SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f DOWNSTREAM CG4612	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14357202	3L_14357202_SNP [dm3] 3L_14364102_SNP [dm6]	G	C	3.111e^-4	0.863	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3L	14357204	3L_14357204_SNP [dm3] 3L_14364104_SNP [dm6]	A	T	3.111e^-4	0.863	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3L	14357209	3L_14357209_SNP [dm3] 3L_14364109_SNP [dm6]	T	C	3.111e^-4	0.863	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
2R	8993135	2R_8993135_SNP [dm3] 2R_13105630_SNP [dm6]	C	T	3.112e^-4	0.863	DOWNSTREAM CG44341 INTERGENIC
2R	15266910	2R_15266910_SNP [dm3] 2R_19379405_SNP [dm6]	A	C	3.118e^-4	0.863	INTRON CG10062
2L	14931301	2L_14931301_SNP [dm3] 2L_14931301_SNP [dm6]	T	A	3.123e^-4	0.863	DOWNSTREAM CG3491 INTRON CG42313
3L	18152624	3L_18152624_SNP [dm3] 3L_18159524_SNP [dm6]	A	G	3.124e^-4	0.863	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13091607	2L_13091607_SNP [dm3] 2L_13091607_SNP [dm6]	T	A	3.125e^-4	0.863	INTERGENIC
3R	9861921	3R_9861921_SNP [dm3] 3R_14036199_SNP [dm6]	C	A	3.126e^-4	0.863	UTR_5_PRIME CG9922 UPSTREAM CG9922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	664034	X_664034_SNP [dm3] X_770001_SNP [dm6]	G	A	3.130e^-4	0.863	UTR_5_PRIME fz3 UPSTREAM fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	6845483	2L_6845483_SNP [dm3] 2L_6845483_SNP [dm6]	C	T	3.131e^-4	0.863	INTERGENIC
3R	16866514	3R_16866514_SNP [dm3] 3R_21040792_SNP [dm6]	C	T	3.135e^-4	0.863	SYNONYMOUS_CODING Dhc93AB
2L	2389768	2L_2389768_SNP [dm3] 2L_2389768_SNP [dm6]	C	G	3.143e^-4	0.863	UTR_3_PRIME CG43750 DOWNSTREAM CG43750
3R	26070170	3R_26070170_SNP [dm3] 3R_30244448_SNP [dm6]	G	A	3.145e^-4	0.863	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
2L	13157845	2L_13157845_SNP [dm3] 2L_13157845_SNP [dm6]	G	T	3.161e^-4	0.863	UPSTREAM Pk34A INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9054876	2R_9054876_SNP [dm3] 2R_13167371_SNP [dm6]	T	C	3.168e^-4	0.863	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	9054888	2R_9054888_SNP [dm3] 2R_13167383_SNP [dm6]	C	A	3.168e^-4	0.863	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	12854080	2R_12854080_SNP [dm3] 2R_16966575_SNP [dm6]	A	G	3.171e^-4	0.863	INTERGENIC
X	7702898	X_7702898_SNP [dm3] X_7808865_SNP [dm6]	C	A	3.171e^-4	0.863	INTERGENIC
2L	7765370	2L_7765370_SNP [dm3] 2L_7765370_SNP [dm6]	G	A	3.183e^-4	0.863	UTR_3_PRIME CG7196
2L	12356156	2L_12356156_SNP [dm3] 2L_12356156_SNP [dm6]	A	T	3.185e^-4	0.863	UPSTREAM CG17010 INTRON bru-2
2R	6264988	2R_6264988_SNP [dm3] 2R_10377483_SNP [dm6]	T	C	3.186e^-4	0.863	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
3R	9070124	3R_9070124_SNP [dm3] 3R_13244402_SNP [dm6]	A	G	3.196e^-4	0.863	SPLICE_SITE_REGION Ace INTRON Ace
2L	11200049	2L_11200049_INS [dm3] 2L_11200049_INS [dm6]	A	AA	3.202e^-4	0.863	INTRON Ca-beta
3L	5844672	3L_5844672_SNP [dm3] 3L_5851572_SNP [dm6]	T	A	3.210e^-4	0.863	INTERGENIC
3L	10701651	3L_10701651_SNP [dm3] 3L_10708551_SNP [dm6]	T	G	3.215e^-4	0.863	INTERGENIC
2R	6324314	2R_6324314_SNP [dm3] 2R_10436809_SNP [dm6]	C	T	3.216e^-4	0.863	SYNONYMOUS_CODING CG12895 DOWNSTREAM RanBPM	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13038081	3R_13038081_SNP [dm3] 3R_17212359_SNP [dm6]	C	T	3.222e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18882828	X_18882828_SNP [dm3] X_18988795_SNP [dm6]	T	C	3.222e^-4	0.863	INTRON CG43759
3L	11856182	3L_11856182_SNP [dm3] 3L_11863082_SNP [dm6]	G	A	3.226e^-4	0.863	SYNONYMOUS_CODING CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15397135	3L_15397135_SNP [dm3] 3L_15404035_SNP [dm6]	C	T	3.228e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9878033	3R_9878033_SNP [dm3] 3R_14052311_SNP [dm6]	C	G	3.231e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16017909	X_16017909_SNP [dm3] X_16123876_SNP [dm6]	G	T	3.231e^-4	0.863	INTRON disco-r	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13038079	3R_13038079_SNP [dm3] 3R_17212357_SNP [dm6]	T	C	3.232e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3664614	2L_3664614_SNP [dm3] 2L_3664614_SNP [dm6]	C	T	3.236e^-4	0.863	INTRON CG34340
2R	6264991	2R_6264991_SNP [dm3] 2R_10377486_SNP [dm6]	G	C	3.239e^-4	0.863	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
3L	1330696	3L_1330696_SNP [dm3] 3L_1330696_SNP [dm6]	T	C	3.242e^-4	0.863	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14902387	2L_14902387_DEL [dm3] 2L_14902387_DEL [dm6]	TCTT	T	3.243e^-4	0.863	INTERGENIC
2L	10964360	2L_10964360_SNP [dm3] 2L_10964360_SNP [dm6]	A	T	3.248e^-4	0.863	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	917225	2L_917225_SNP [dm3] 2L_917225_SNP [dm6]	T	C	3.249e^-4	0.863	SYNONYMOUS_CODING GluRIIC
2R	9053916	2R_9053916_SNP [dm3] 2R_13166411_SNP [dm6]	G	A	3.254e^-4	0.863	INTRON GLaz
2L	8952085	2L_8952085_SNP [dm3] 2L_8952085_SNP [dm6]	A	G	3.261e^-4	0.863	UPSTREAM C1GalTA INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13937775	2L_13937775_SNP [dm3] 2L_13937775_SNP [dm6]	G	A	3.268e^-4	0.863	INTRON Ance-3
2L	7772064	2L_7772064_SNP [dm3] 2L_7772064_SNP [dm6]	G	C	3.276e^-4	0.863	INTRON CG7191	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4053334	2L_4053334_SNP [dm3] 2L_4053334_SNP [dm6]	C	T	3.277e^-4	0.863	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5098211	3L_5098211_SNP [dm3] 3L_5098211_SNP [dm6]	C	T	3.282e^-4	0.863	DOWNSTREAM CR34047 INTERGENIC
3L	11413956	3L_11413956_SNP [dm3] 3L_11420856_SNP [dm6]	A	C	3.286e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10265336	2R_10265336_SNP [dm3] 2R_14377831_SNP [dm6]	T	A	3.288e^-4	0.863	UPSTREAM Dh44-R1 INTERGENIC
3L	8243272	3L_8243272_SNP [dm3] 3L_8250172_SNP [dm6]	G	T	3.289e^-4	0.863	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	11429943	3L_11429943_SNP [dm3] 3L_11436843_SNP [dm6]	A	T	3.294e^-4	0.863	DOWNSTREAM CR44548 INTERGENIC
2R	19307309	2R_19307309_DEL [dm3] 2R_23419786_DEL [dm6]	CAGGGAACTC	C	3.297e^-4	0.863	UPSTREAM CG9812 INTERGENIC
2L	20387688	2L_20387688_SNP [dm3] 2L_20387688_SNP [dm6]	C	T	3.301e^-4	0.863	INTRON CG10947	TF binding site mE1_TFBS_cad
2R	18247030	2R_18247030_SNP [dm3] 2R_22359525_SNP [dm6]	A	T	3.302e^-4	0.863	INTRON Liprin-gamma
3R	9102900	3R_9102900_SNP [dm3] 3R_13277178_SNP [dm6]	C	A	3.302e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12334076	3R_12334076_SNP [dm3] 3R_16508354_SNP [dm6]	T	G	3.303e^-4	0.863	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8982187	2R_8982187_SNP [dm3] 2R_13094682_SNP [dm6]	A	T	3.303e^-4	0.863	INTERGENIC
3R	14163338	3R_14163338_INS [dm3] 3R_18337616_INS [dm6]	A	AA	3.305e^-4	0.863	INTRON CG15803
3R	23679610	3R_23679610_SNP [dm3] 3R_27853888_SNP [dm6]	C	T	3.320e^-4	0.866	INTRON CG34353
2R	19180402	2R_19180402_SNP [dm3] 2R_23292879_SNP [dm6]	C	A	3.332e^-4	0.868	INTERGENIC
3R	17640045	3R_17640045_SNP [dm3] 3R_21814323_SNP [dm6]	C	T	3.343e^-4	0.868	INTRON CASK
3L	8822770	3L_8822770_SNP [dm3] 3L_8829670_SNP [dm6]	C	T	3.349e^-4	0.868	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12259639	3L_12259639_SNP [dm3] 3L_12266539_SNP [dm6]	A	C	3.367e^-4	0.868	UPSTREAM app & 1 other INTRON app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8278240	X_8278240_SNP [dm3] X_8384207_SNP [dm6]	G	A	3.372e^-4	0.868	INTERGENIC
3L	1056718	3L_1056718_SNP [dm3] 3L_1056718_SNP [dm6]	T	C	3.372e^-4	0.868	INTRON bab1
3L	8208991	3L_8208991_SNP [dm3] 3L_8215891_SNP [dm6]	A	G	3.374e^-4	0.868	UTR_3_PRIME CG8012
3R	23359463	3R_23359463_SNP [dm3] 3R_27533741_SNP [dm6]	G	A	3.376e^-4	0.868	UTR_3_PRIME CG12885
X	396647	X_396647_SNP [dm3] X_502614_SNP [dm6]	G	A	3.377e^-4	0.868	SYNONYMOUS_CODING svr	TF binding site mE1_TFBS_HSA
2L	3268250	2L_3268250_INS [dm3] 2L_3268250_INS [dm6]	T	TACCAT	3.382e^-4	0.868	UPSTREAM CR44484 INTERGENIC
3L	12623327	3L_12623327_SNP [dm3] 3L_12630227_SNP [dm6]	G	A	3.394e^-4	0.868	INTRON CR32111
3R	12386710	3R_12386710_SNP [dm3] 3R_16560988_SNP [dm6]	T	C	3.400e^-4	0.868	INTRON CG42342
3L	8243265	3L_8243265_SNP [dm3] 3L_8250165_SNP [dm6]	G	A	3.408e^-4	0.868	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
X	656742	X_656742_SNP [dm3] X_762709_SNP [dm6]	G	T	3.410e^-4	0.868	UTR_3_PRIME RpL22 DOWNSTREAM CG5273 & 2 others EXON CR42491	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	8278239	X_8278239_SNP [dm3] X_8384206_SNP [dm6]	A	T	3.415e^-4	0.868	INTERGENIC
2L	20519610	2L_20519610_SNP [dm3] 2L_20519610_SNP [dm6]	C	A	3.421e^-4	0.868	INTERGENIC
2L	14745696	2L_14745696_SNP [dm3] 2L_14745696_SNP [dm6]	C	T	3.429e^-4	0.868	UPSTREAM CR45459 & 2 others DOWNSTREAM CG42681 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10701640	3R_10701640_SNP [dm3] 3R_14875918_SNP [dm6]	A	G	3.430e^-4	0.868	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8278213	X_8278213_SNP [dm3] X_8384180_SNP [dm6]	G	T	3.432e^-4	0.868	INTERGENIC
2L	904828	2L_904828_SNP [dm3] 2L_904828_SNP [dm6]	T	A	3.433e^-4	0.868	DOWNSTREAM CR45261 INTERGENIC
2L	9204032	2L_9204032_SNP [dm3] 2L_9204032_SNP [dm6]	A	C	3.439e^-4	0.868	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4238743	3L_4238743_SNP [dm3] 3L_4238743_SNP [dm6]	A	G	3.439e^-4	0.868	INTERGENIC
X	10215019	X_10215019_SNP [dm3] X_10320986_SNP [dm6]	A	C	3.450e^-4	0.868	INTRON alpha-Man-I
2L	752076	2L_752076_SNP [dm3] 2L_752076_SNP [dm6]	C	T	3.451e^-4	0.868	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	1330708	3L_1330708_SNP [dm3] 3L_1330708_SNP [dm6]	T	G	3.460e^-4	0.868	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2016100	3L_2016100_SNP [dm3] 3L_2016100_SNP [dm6]	C	T	3.461e^-4	0.868	INTERGENIC
3R	17744683	3R_17744683_SNP [dm3] 3R_21918961_SNP [dm6]	T	A	3.465e^-4	0.868	INTERGENIC
3R	4885937	3R_4885937_SNP [dm3] 3R_9060215_SNP [dm6]	G	T	3.466e^-4	0.868	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4118056	2L_4118056_SNP [dm3] 2L_4118056_SNP [dm6]	C	T	3.469e^-4	0.868	INTERGENIC
3R	15711541	3R_15711541_SNP [dm3] 3R_19885819_SNP [dm6]	G	A	3.470e^-4	0.868	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
2L	17680900	2L_17680900_SNP [dm3] 2L_17680900_SNP [dm6]	T	A	3.474e^-4	0.868	INTRON CadN
2R	17110883	2R_17110883_SNP [dm3] 2R_21223378_SNP [dm6]	G	A	3.477e^-4	0.868	INTRON ASPP
X	19673647	X_19673647_SNP [dm3] X_19779614_SNP [dm6]	A	G	3.480e^-4	0.868	SYNONYMOUS_CODING vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12853802	X_12853802_SNP [dm3] X_12959769_SNP [dm6]	G	A	3.497e^-4	0.869	SYNONYMOUS_CODING CG32642
X	19122620	X_19122620_SNP [dm3] X_19228587_SNP [dm6]	T	C	3.500e^-4	0.869	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13787930	2L_13787930_SNP [dm3] 2L_13787930_SNP [dm6]	A	G	3.501e^-4	0.869	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
X	9593333	X_9593333_SNP [dm3] X_9699300_SNP [dm6]	G	A	3.509e^-4	0.869	INTERGENIC
2L	1035584	2L_1035584_SNP [dm3] 2L_1035584_SNP [dm6]	T	G	3.519e^-4	0.869	INTRON IA-2
3L	8221928	3L_8221928_SNP [dm3] 3L_8228828_SNP [dm6]	G	T	3.527e^-4	0.869	UPSTREAM eIF4E-3 INTERGENIC
3L	5906507	3L_5906507_SNP [dm3] 3L_5913407_SNP [dm6]	A	T	3.534e^-4	0.869	INTRON CG13288
2L	22043927	2L_22043927_SNP [dm3] 2L_22043927_SNP [dm6]	G	T	3.537e^-4	0.869	UPSTREAM CG31601 INTERGENIC
3L	10657537	3L_10657537_SNP [dm3] 3L_10664437_SNP [dm6]	G	C	3.548e^-4	0.869	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	20592437	2L_20592437_SNP [dm3] 2L_20592437_SNP [dm6]	A	T	3.551e^-4	0.869	INTRON CR44909
3R	6856279	3R_6856279_SNP [dm3] 3R_11030557_SNP [dm6]	C	G	3.551e^-4	0.869	INTRON CG34114
2L	14074415	2L_14074415_SNP [dm3] 2L_14074415_SNP [dm6]	T	C	3.552e^-4	0.869	INTRON nAChRalpha5
X	6989488	X_6989488_DEL [dm3] X_7095455_DEL [dm6]	TGCAT	T	3.556e^-4	0.869	INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10701641	3R_10701641_SNP [dm3] 3R_14875919_SNP [dm6]	A	T	3.558e^-4	0.869	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12853887	2R_12853887_SNP [dm3] 2R_16966382_SNP [dm6]	G	A	3.560e^-4	0.869	INTERGENIC
2L	3472764	2L_3472764_SNP [dm3] 2L_3472764_SNP [dm6]	G	T	3.575e^-4	0.869	UTR_5_PRIME pgant4 DOWNSTREAM CG31776	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13593171	3R_13593171_SNP [dm3] 3R_17767449_SNP [dm6]	G	C	3.580e^-4	0.869	DOWNSTREAM CG43102 INTERGENIC
2L	20628757	2L_20628757_INS [dm3] 2L_20628757_INS [dm6]	A	AA	3.587e^-4	0.869	INTERGENIC
2L	15565395	2L_15565395_SNP [dm3] 2L_15565395_SNP [dm6]	T	A	3.615e^-4	0.869	INTRON kek3
2L	14861895	2L_14861895_SNP [dm3] 2L_14861895_SNP [dm6]	T	A	3.617e^-4	0.869	INTERGENIC
3L	4974208	3L_4974208_SNP [dm3] 3L_4974208_SNP [dm6]	C	A	3.631e^-4	0.869	INTRON Con
2L	9714387	2L_9714387_SNP [dm3] 2L_9714387_SNP [dm6]	G	T	3.633e^-4	0.869	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl
3L	10466393	3L_10466393_SNP [dm3] 3L_10473293_SNP [dm6]	A	C	3.633e^-4	0.869	INTERGENIC
2R	2776717	2R_2776717_SNP [dm3] 2R_6889212_SNP [dm6]	T	C	3.634e^-4	0.869	DOWNSTREAM Spn42De INTERGENIC	TF binding site mE1_TFBS_cad
3L	6046359	3L_6046359_INS [dm3] 3L_6053259_INS [dm6]	C	CGAATATAAATT...	3.635e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3L	6046363	3L_6046363_SNP [dm3] 3L_6053263_SNP [dm6]	C	T	3.635e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	17050386	3R_17050386_SNP [dm3] 3R_21224664_SNP [dm6]	C	T	3.635e^-4	0.869	UPSTREAM CR44265 INTRON Nelf-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15472634	2R_15472634_SNP [dm3] 2R_19585129_SNP [dm6]	C	T	3.648e^-4	0.869	INTRON sm
3L	1461567	3L_1461567_SNP [dm3] 3L_1461567_SNP [dm6]	C	G	3.651e^-4	0.869	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11413962	3L_11413962_SNP [dm3] 3L_11420862_SNP [dm6]	A	T	3.654e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1330071	3L_1330071_SNP [dm3] 3L_1330071_SNP [dm6]	A	C	3.667e^-4	0.869	DOWNSTREAM Myo61F INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20324838	2L_20324838_SNP [dm3] 2L_20324838_SNP [dm6]	A	T	3.669e^-4	0.869	INTRON spir
2L	9929056	2L_9929056_SNP [dm3] 2L_9929056_SNP [dm6]	C	T	3.685e^-4	0.869	SYNONYMOUS_CODING CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4977015	3L_4977015_SNP [dm3] 3L_4977015_SNP [dm6]	A	T	3.706e^-4	0.869	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13911315	2L_13911315_SNP [dm3] 2L_13911315_SNP [dm6]	A	C	3.708e^-4	0.869	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16364951	2L_16364951_SNP [dm3] 2L_16364951_SNP [dm6]	T	C	3.710e^-4	0.869	UPSTREAM jhamt INTERGENIC	regulatory region REDfly_CRMs
3L	11678283	3L_11678283_SNP [dm3] 3L_11685183_SNP [dm6]	T	C	3.712e^-4	0.869	INTRON Sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3664641	3L_3664641_SNP [dm3] 3L_3664641_SNP [dm6]	T	C	3.715e^-4	0.869	INTERGENIC
X	16325027	X_16325027_SNP [dm3] X_16430994_SNP [dm6]	G	A	3.729e^-4	0.869	SYNONYMOUS_CODING hang	TF binding site mE1_TFBS_cad
X	8278244	X_8278244_SNP [dm3] X_8384211_SNP [dm6]	A	G	3.731e^-4	0.869	INTERGENIC
2R	8982073	2R_8982073_SNP [dm3] 2R_13094568_SNP [dm6]	G	A	3.750e^-4	0.869	INTERGENIC
2R	6629826	2R_6629826_SNP [dm3] 2R_10742321_SNP [dm6]	G	A	3.759e^-4	0.869	INTRON CG33144	TF binding site mE1_TFBS_inv
3L	7993371	3L_7993371_SNP [dm3] 3L_8000271_SNP [dm6]	G	T	3.760e^-4	0.869	INTRON nmo
3R	16941001	3R_16941001_SNP [dm3] 3R_21115279_SNP [dm6]	G	A	3.760e^-4	0.869	SYNONYMOUS_CODING Rab11 UPSTREAM ppan
2L	4200461	2L_4200461_SNP [dm3] 2L_4200461_SNP [dm6]	G	T	3.762e^-4	0.869	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6046358	3L_6046358_SNP [dm3] 3L_6053258_SNP [dm6]	G	A	3.769e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
X	22158164	X_22158164_SNP [dm3] X_22756328_SNP [dm6]	G	T	3.773e^-4	0.869	INTRON CR44997
3L	15005644	3L_15005644_SNP [dm3] 3L_15012544_SNP [dm6]	T	A	3.773e^-4	0.869	INTRON Reck
2L	4205176	2L_4205176_SNP [dm3] 2L_4205176_SNP [dm6]	G	A	3.774e^-4	0.869	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4974209	3L_4974209_SNP [dm3] 3L_4974209_SNP [dm6]	G	A	3.787e^-4	0.869	INTRON Con
2R	10860511	2R_10860511_SNP [dm3] 2R_14973006_SNP [dm6]	T	A	3.795e^-4	0.869	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17935054	2R_17935054_SNP [dm3] 2R_22047549_SNP [dm6]	T	A	3.800e^-4	0.869	INTERGENIC
X	11688508	X_11688508_SNP [dm3] X_11794475_SNP [dm6]	T	A	3.805e^-4	0.869	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11164423	2L_11164423_SNP [dm3] 2L_11164423_SNP [dm6]	A	T	3.808e^-4	0.869	INTRON Ca-beta
2R	10384867	2R_10384867_SNP [dm3] 2R_14497362_SNP [dm6]	C	T	3.814e^-4	0.869	UTR_3_PRIME Cpsf160 DOWNSTREAM L
3L	5534652	3L_5534652_SNP [dm3] 3L_5541552_SNP [dm6]	C	T	3.822e^-4	0.869	INTRON CG10625
2R	14314684	2R_14314684_SNP [dm3] 2R_18427179_SNP [dm6]	G	T	3.828e^-4	0.869	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG5174	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8103524	3R_8103524_SNP [dm3] 3R_12277802_SNP [dm6]	A	G	3.832e^-4	0.869	INTRON svp
2R	3890756	2R_3890756_SNP [dm3] 2R_8003251_SNP [dm6]	C	A	3.835e^-4	0.869	INTERGENIC
3R	12334108	3R_12334108_SNP [dm3] 3R_16508386_SNP [dm6]	C	G	3.835e^-4	0.869	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8311892	2L_8311892_SNP [dm3] 2L_8311892_SNP [dm6]	G	A	3.837e^-4	0.869	SYNONYMOUS_CODING CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17101759	2L_17101759_SNP [dm3] 2L_17101759_SNP [dm6]	T	C	3.839e^-4	0.869	INTERGENIC
3R	11701636	3R_11701636_SNP [dm3] 3R_15875914_SNP [dm6]	C	A	3.845e^-4	0.869	UTR_5_PRIME CG31183
2L	9407815	2L_9407815_SNP [dm3] 2L_9407815_SNP [dm6]	G	A	3.848e^-4	0.869	INTRON Shawl
3L	5022560	3L_5022560_SNP [dm3] 3L_5022560_SNP [dm6]	C	A	3.848e^-4	0.869	INTRON Con	TF binding site mE1_TFBS_chinmo
3R	14936457	3R_14936457_INS [dm3] 3R_19110735_INS [dm6]	A	ACATA	3.850e^-4	0.869	INTRON CG6040
X	11070620	X_11070620_SNP [dm3] X_11176587_SNP [dm6]	C	T	3.851e^-4	0.869	INTERGENIC
3R	6766797	3R_6766797_SNP [dm3] 3R_10941075_SNP [dm6]	T	A	3.864e^-4	0.869	INTERGENIC
3L	8659800	3L_8659800_SNP [dm3] 3L_8666700_SNP [dm6]	A	C	3.866e^-4	0.869	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	4529261	3L_4529261_DEL [dm3] 3L_4529261_DEL [dm6]	TAAAG	T	3.870e^-4	0.869	INTRON Tie
2R	9901761	2R_9901761_SNP [dm3] 2R_14014256_SNP [dm6]	A	G	3.878e^-4	0.869	INTRON mam
2L	6448214	2L_6448214_SNP [dm3] 2L_6448214_SNP [dm6]	C	A	3.886e^-4	0.869	UTR_5_PRIME CG9527 UPSTREAM CG9527 DOWNSTREAM retm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18600727	2R_18600727_SNP [dm3] 2R_22713222_SNP [dm6]	G	A	3.891e^-4	0.869	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
X	768884	X_768884_SNP [dm3] X_874851_SNP [dm6]	G	T	3.895e^-4	0.869	UPSTREAM CG11664 INTRON CG43867
2L	20519767	2L_20519767_SNP [dm3] 2L_20519767_SNP [dm6]	C	T	3.895e^-4	0.869	INTERGENIC
2L	14846674	2L_14846674_SNP [dm3] 2L_14846674_SNP [dm6]	G	A	3.899e^-4	0.869	INTRON CG15279
3R	8096417	3R_8096417_SNP [dm3] 3R_12270695_SNP [dm6]	G	A	3.906e^-4	0.869	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
2L	12695806	2L_12695806_SNP [dm3] 2L_12695806_SNP [dm6]	A	T	3.913e^-4	0.869	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
X	10215058	X_10215058_SNP [dm3] X_10321025_SNP [dm6]	C	A	3.915e^-4	0.869	INTRON alpha-Man-I
2L	9427246	2L_9427246_SNP [dm3] 2L_9427246_SNP [dm6]	G	A	3.919e^-4	0.869	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9170569	3R_9170569_SNP [dm3] 3R_13344847_SNP [dm6]	A	T	3.925e^-4	0.869	UTR_3_PRIME PK2-R1
2R	2968155	2R_2968155_SNP [dm3] 2R_7080650_SNP [dm6]	A	G	3.934e^-4	0.869	INTERGENIC
2L	8312263	2L_8312263_SNP [dm3] 2L_8312263_SNP [dm6]	A	G	3.935e^-4	0.869	INTRON CG7806
3R	3912076	3R_3912076_SNP [dm3] 3R_8086354_SNP [dm6]	T	A	3.937e^-4	0.869	UTR_3_PRIME mAChR-B UPSTREAM CG7910
2R	19449722	2R_19449722_SNP [dm3] 2R_23562199_SNP [dm6]	T	A	3.939e^-4	0.869	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13368080	3L_13368080_SNP [dm3] 3L_13374980_SNP [dm6]	T	C	3.952e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9171959	3R_9171959_SNP [dm3] 3R_13346237_SNP [dm6]	A	C	3.963e^-4	0.869	INTERGENIC
2L	13722354	2L_13722354_SNP [dm3] 2L_13722354_SNP [dm6]	G	A	3.964e^-4	0.869	UTR_3_PRIME CG9014
3L	13200526	3L_13200526_SNP [dm3] 3L_13207426_SNP [dm6]	A	T	3.979e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12636032	2R_12636032_SNP [dm3] 2R_16748527_SNP [dm6]	G	T	3.981e^-4	0.869	SYNONYMOUS_CODING Acp53C14a DOWNSTREAM Acp53C14b
2L	21900794	2L_21900794_SNP [dm3] 2L_21900794_SNP [dm6]	G	A	3.981e^-4	0.869	INTERGENIC
3L	12258071	3L_12258071_DEL [dm3] 3L_12264971_DEL [dm6]	TCAATTTTGCGGAT...	T	3.987e^-4	0.869	INTRON app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3960562	3L_3960562_SNP [dm3] 3L_3960562_SNP [dm6]	A	G	3.995e^-4	0.869	UPSTREAM CG12605 INTRON CG12605
2R	20296047	2R_20296047_SNP [dm3] 2R_24408524_SNP [dm6]	T	C	4.000e^-4	0.869	INTRON SerT	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	8102171	3R_8102171_SNP [dm3] 3R_12276449_SNP [dm6]	A	C	4.001e^-4	0.869	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6046428	3L_6046428_SNP [dm3] 3L_6053328_SNP [dm6]	C	G	4.002e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	13593061	3R_13593061_SNP [dm3] 3R_17767339_SNP [dm6]	G	T	4.016e^-4	0.869	DOWNSTREAM CG43102 INTERGENIC
2R	18247859	2R_18247859_SNP [dm3] 2R_22360354_SNP [dm6]	T	G	4.021e^-4	0.869	INTRON Liprin-gamma
3L	8243067	3L_8243067_SNP [dm3] 3L_8249967_SNP [dm6]	G	A	4.038e^-4	0.869	INTRON Dscam4
3L	8243123	3L_8243123_SNP [dm3] 3L_8250023_SNP [dm6]	T	A	4.038e^-4	0.869	INTRON Dscam4
X	4585985	X_4585985_SNP [dm3] X_4691952_SNP [dm6]	T	A	4.043e^-4	0.869	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	18622622	2L_18622622_SNP [dm3] 2L_18622622_SNP [dm6]	T	C	4.043e^-4	0.869	INTRON MESR3
2L	9437205	2L_9437205_INS [dm3] 2L_9437205_INS [dm6]	T	TATAAATAAAATAT...	4.044e^-4	0.869	UTR_3_PRIME RpS28-like UPSTREAM numb DOWNSTREAM CG3769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	9149412	2R_9149412_SNP [dm3] 2R_13261907_SNP [dm6]	G	T	4.049e^-4	0.869	UPSTREAM CG42319 INTRON CG42319
2L	15017864	2L_15017864_SNP [dm3] 2L_15017864_SNP [dm6]	T	A	4.050e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9837173	2L_9837173_SNP [dm3] 2L_9837173_SNP [dm6]	C	G	4.060e^-4	0.869	INTRON nAChRalpha6
2R	14540002	2R_14540002_SNP [dm3] 2R_18652497_SNP [dm6]	T	A	4.062e^-4	0.869	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6046518	3L_6046518_SNP [dm3] 3L_6053418_SNP [dm6]	A	G	4.062e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2R	15274179	2R_15274179_SNP [dm3] 2R_19386674_SNP [dm6]	G	A	4.064e^-4	0.869	SYNONYMOUS_CODING CG10081
2L	20517182	2L_20517182_SNP [dm3] 2L_20517182_SNP [dm6]	T	G	4.077e^-4	0.869	INTERGENIC
2L	7039488	2L_7039488_SNP [dm3] 2L_7039488_SNP [dm6]	G	A	4.077e^-4	0.869	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9046004	2R_9046004_INS [dm3] 2R_13158499_INS [dm6]	T	TCATTTTTAGTT...	4.084e^-4	0.869	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	10557218	3R_10557218_SNP [dm3] 3R_14731496_SNP [dm6]	G	T	4.088e^-4	0.869	UTR_5_PRIME CG7530 UPSTREAM CG7530 DOWNSTREAM eff	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20516830	2L_20516830_SNP [dm3] 2L_20516830_SNP [dm6]	A	T	4.093e^-4	0.869	INTERGENIC
X	18092600	X_18092600_SNP [dm3] X_18198567_SNP [dm6]	G	A	4.095e^-4	0.869	INTRON Frq2
X	698658	X_698658_SNP [dm3] X_804625_SNP [dm6]	G	C	4.096e^-4	0.869	SYNONYMOUS_CODING CG13358	TF binding site mE1_TFBS_chinmo
2L	10860001	2L_10860001_SNP [dm3] 2L_10860001_SNP [dm6]	G	A	4.099e^-4	0.869	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13485630	3R_13485630_SNP [dm3] 3R_17659908_SNP [dm6]	A	G	4.102e^-4	0.869	INTRON CG14322
3L	9397226	3L_9397226_SNP [dm3] 3L_9404126_SNP [dm6]	G	A	4.105e^-4	0.869	UPSTREAM Cpr67B INTERGENIC
2L	14745310	2L_14745310_SNP [dm3] 2L_14745310_SNP [dm6]	A	T	4.110e^-4	0.869	UPSTREAM CR45459 & 1 other DOWNSTREAM CR45460 & 1 other INTERGENIC
3L	11586970	3L_11586970_SNP [dm3] 3L_11593870_SNP [dm6]	A	T	4.111e^-4	0.869	UPSTREAM CR45671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17244148	2L_17244148_SNP [dm3] 2L_17244148_SNP [dm6]	C	G	4.113e^-4	0.869	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da
3R	17776904	3R_17776904_SNP [dm3] 3R_21951182_SNP [dm6]	T	G	4.116e^-4	0.869	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	14886455	3R_14886455_SNP [dm3] 3R_19060733_SNP [dm6]	A	G	4.117e^-4	0.869	SYNONYMOUS_CODING cdi
X	11688453	X_11688453_SNP [dm3] X_11794420_SNP [dm6]	A	T	4.120e^-4	0.869	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8243242	3L_8243242_MNP [dm3] 3L_8250142_MNP [dm6]	TAAAGCA	ATTTTGT	4.123e^-4	0.869	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
2L	9301143	2L_9301143_SNP [dm3] 2L_9301143_SNP [dm6]	T	C	4.143e^-4	0.869	UTR_3_PRIME Ggamma30A
X	18882373	X_18882373_SNP [dm3] X_18988340_SNP [dm6]	T	G	4.153e^-4	0.869	INTRON CG43759
2L	13787993	2L_13787993_SNP [dm3] 2L_13787993_SNP [dm6]	A	T	4.159e^-4	0.869	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
2R	9052418	2R_9052418_DEL [dm3] 2R_13164913_DEL [dm6]	AGTGAATGGAAA...	A	4.167e^-4	0.869	UPSTREAM CG15870 INTRON GLaz
2L	14844534	2L_14844534_SNP [dm3] 2L_14844534_SNP [dm6]	T	G	4.168e^-4	0.869	DOWNSTREAM CG15279 INTERGENIC
3R	9151680	3R_9151680_SNP [dm3] 3R_13325958_SNP [dm6]	A	G	4.181e^-4	0.869	INTERGENIC
2L	15017861	2L_15017861_SNP [dm3] 2L_15017861_SNP [dm6]	A	T	4.185e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15017867	2L_15017867_SNP [dm3] 2L_15017867_SNP [dm6]	C	A	4.185e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17114183	2L_17114183_SNP [dm3] 2L_17114183_SNP [dm6]	T	A	4.203e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8243251	3L_8243251_SNP [dm3] 3L_8250151_SNP [dm6]	T	A	4.210e^-4	0.869	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	8243266	3L_8243266_SNP [dm3] 3L_8250166_SNP [dm6]	T	A	4.210e^-4	0.869	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
2R	19450363	2R_19450363_SNP [dm3] 2R_23562840_SNP [dm6]	A	T	4.219e^-4	0.869	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15017870	2L_15017870_SNP [dm3] 2L_15017870_SNP [dm6]	T	A	4.220e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10513393	2L_10513393_SNP [dm3] 2L_10513393_SNP [dm6]	C	T	4.222e^-4	0.869	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083	TF binding site mE1_TFBS_cad
3L	9369217	3L_9369217_SNP [dm3] 3L_9376117_SNP [dm6]	A	G	4.229e^-4	0.869	UTR_3_PRIME CG4461 DOWNSTREAM Hsp26
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	4.234e^-4	0.869	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	16876291	3L_16876291_SNP [dm3] 3L_16883191_SNP [dm6]	C	A	4.240e^-4	0.869	INTRON Lmpt
2L	11059535	2L_11059535_SNP [dm3] 2L_11059535_SNP [dm6]	C	A	4.242e^-4	0.869	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19754966	X_19754966_SNP [dm3] X_19860933_SNP [dm6]	T	C	4.247e^-4	0.869	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7756403	2L_7756403_SNP [dm3] 2L_7756403_SNP [dm6]	A	G	4.247e^-4	0.869	SYNONYMOUS_CODING CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8197542	3L_8197542_DEL [dm3] 3L_8204442_DEL [dm6]	AGCCTTTTAAGA...	A	4.248e^-4	0.869	INTERGENIC
3L	8202956	3L_8202956_SNP [dm3] 3L_8209856_SNP [dm6]	A	G	4.248e^-4	0.869	UTR_3_PRIME CG32364
3R	24907885	3R_24907885_SNP [dm3] 3R_29082163_SNP [dm6]	G	A	4.250e^-4	0.869	INTRON CG11873	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6046390	3L_6046390_SNP [dm3] 3L_6053290_SNP [dm6]	T	C	4.250e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3L	6046392	3L_6046392_INS [dm3] 3L_6053292_INS [dm6]	T	TT	4.250e^-4	0.869	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2L	15017800	2L_15017800_SNP [dm3] 2L_15017800_SNP [dm6]	T	C	4.252e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11688449	X_11688449_SNP [dm3] X_11794416_SNP [dm6]	A	G	4.252e^-4	0.869	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8654878	2R_8654878_SNP [dm3] 2R_12767373_SNP [dm6]	C	T	4.258e^-4	0.869	INTERGENIC
3R	8104205	3R_8104205_SNP [dm3] 3R_12278483_SNP [dm6]	T	C	4.266e^-4	0.869	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	16271875	2L_16271875_SNP [dm3] 2L_16271875_SNP [dm6]	A	G	4.270e^-4	0.869	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9151651	3R_9151651_SNP [dm3] 3R_13325929_SNP [dm6]	A	T	4.271e^-4	0.869	INTERGENIC
3L	21249686	3L_21249686_DEL [dm3] 3L_21256586_DEL [dm6]	ACCCAAGACTCTCCGTTTTT...	A	4.276e^-4	0.869	INTRON Eip78C
2L	11723259	2L_11723259_SNP [dm3] 2L_11723259_SNP [dm6]	A	C	4.280e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11724876	2L_11724876_SNP [dm3] 2L_11724876_SNP [dm6]	T	C	4.280e^-4	0.869	INTERGENIC
3R	9866915	3R_9866915_SNP [dm3] 3R_14041193_SNP [dm6]	C	A	4.281e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13029459	2L_13029459_SNP [dm3] 2L_13029459_SNP [dm6]	G	A	4.282e^-4	0.869	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	7930252	2L_7930252_SNP [dm3] 2L_7930252_SNP [dm6]	G	A	4.285e^-4	0.869	INTRON Snoo
2L	14861780	2L_14861780_SNP [dm3] 2L_14861780_SNP [dm6]	G	C	4.288e^-4	0.869	INTERGENIC
3R	23993787	3R_23993787_SNP [dm3] 3R_28168065_SNP [dm6]	A	G	4.304e^-4	0.869	INTRON CG34354
3R	17775710	3R_17775710_SNP [dm3] 3R_21949988_SNP [dm6]	C	T	4.308e^-4	0.869	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2R	8858434	2R_8858434_SNP [dm3] 2R_12970929_SNP [dm6]	G	A	4.316e^-4	0.869	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12334135	3R_12334135_SNP [dm3] 3R_16508413_SNP [dm6]	T	C	4.317e^-4	0.869	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14357189	3L_14357189_SNP [dm3] 3L_14364089_SNP [dm6]	C	A	4.320e^-4	0.869	INTRON fz	TF binding site BDTNP1_TFBS_da
2R	15472629	2R_15472629_SNP [dm3] 2R_19585124_SNP [dm6]	C	T	4.325e^-4	0.869	INTRON sm
X	20693774	X_20693774_SNP [dm3] X_20822747_SNP [dm6]	T	C	4.332e^-4	0.869	INTRON shakB & 1 other
3L	13650300	3L_13650300_SNP [dm3] 3L_13657200_SNP [dm6]	C	T	4.334e^-4	0.869	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20393120	2L_20393120_SNP [dm3] 2L_20393120_SNP [dm6]	A	T	4.341e^-4	0.869	INTRON CG10947
X	1405411	X_1405411_SNP [dm3] X_1511378_SNP [dm6]	C	T	4.343e^-4	0.869	DOWNSTREAM CG14795 INTRON inc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11126148	2L_11126148_SNP [dm3] 2L_11126148_SNP [dm6]	T	C	4.345e^-4	0.869	SPLICE_SITE_REGION Nup160 SYNONYMOUS_CODING Nup160
X	8430365	X_8430365_SNP [dm3] X_8536332_SNP [dm6]	A	G	4.349e^-4	0.869	INTRON Nrg
2L	8912143	2L_8912143_INS [dm3] 2L_8912143_INS [dm6]	A	AA	4.359e^-4	0.869	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13324833	3L_13324833_SNP [dm3] 3L_13331733_SNP [dm6]	G	A	4.360e^-4	0.869	INTERGENIC
2L	4722693	2L_4722693_SNP [dm3] 2L_4722693_SNP [dm6]	T	C	4.364e^-4	0.869	DOWNSTREAM CG34351 INTERGENIC
X	16427359	X_16427359_SNP [dm3] X_16533326_SNP [dm6]	C	A	4.367e^-4	0.869	UPSTREAM para INTERGENIC
2L	4601253	2L_4601253_SNP [dm3] 2L_4601253_SNP [dm6]	A	C	4.367e^-4	0.869	INTRON dp
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	4.367e^-4	0.869	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
3L	8243260	3L_8243260_SNP [dm3] 3L_8250160_SNP [dm6]	T	A	4.374e^-4	0.869	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	8243262	3L_8243262_SNP [dm3] 3L_8250162_SNP [dm6]	G	A	4.374e^-4	0.869	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3R	9170577	3R_9170577_SNP [dm3] 3R_13344855_SNP [dm6]	A	C	4.374e^-4	0.869	UTR_3_PRIME PK2-R1
2L	14399650	2L_14399650_SNP [dm3] 2L_14399650_SNP [dm6]	A	G	4.374e^-4	0.869	INTRON elB
3R	11811072	3R_11811072_SNP [dm3] 3R_15985350_SNP [dm6]	C	T	4.383e^-4	0.869	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19560885	2L_19560885_DEL [dm3] 2L_19560885_DEL [dm6]	ACAAATACGTATCTGCGCGT...	A	4.383e^-4	0.869	SPLICE_SITE_REGION Tep5
2L	10460556	2L_10460556_SNP [dm3] 2L_10460556_SNP [dm6]	A	G	4.384e^-4	0.869	INTRON LM408
2L	917222	2L_917222_SNP [dm3] 2L_917222_SNP [dm6]	G	C	4.390e^-4	0.869	SYNONYMOUS_CODING GluRIIC
2L	14830685	2L_14830685_SNP [dm3] 2L_14830685_SNP [dm6]	G	C	4.404e^-4	0.869	INTERGENIC
3R	14618480	3R_14618480_SNP [dm3] 3R_18792758_SNP [dm6]	T	A	4.407e^-4	0.869	UPSTREAM CG7720 INTRON CG7720
3L	13105160	3L_13105160_SNP [dm3] 3L_13112060_SNP [dm6]	A	T	4.418e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6823987	2L_6823987_SNP [dm3] 2L_6823987_SNP [dm6]	A	T	4.421e^-4	0.869	INTRON sens-2
X	18798027	X_18798027_INS [dm3] X_18903994_INS [dm6]	A	AA	4.428e^-4	0.869	INTRON CG7378
2L	21328382	2L_21328382_SNP [dm3] 2L_21328382_SNP [dm6]	A	T	4.430e^-4	0.869	INTERGENIC
2R	14539911	2R_14539911_SNP [dm3] 2R_18652406_SNP [dm6]	G	A	4.436e^-4	0.869	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16687518	2R_16687518_SNP [dm3] 2R_20800013_SNP [dm6]	G	T	4.440e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12411573	3L_12411573_SNP [dm3] 3L_12418473_SNP [dm6]	A	G	4.449e^-4	0.869	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	14268290	2L_14268290_SNP [dm3] 2L_14268290_SNP [dm6]	G	A	4.455e^-4	0.869	INTRON wb
3L	3960699	3L_3960699_SNP [dm3] 3L_3960699_SNP [dm6]	C	T	4.462e^-4	0.869	UPSTREAM CG12605 INTRON CG12605
2L	9349024	2L_9349024_SNP [dm3] 2L_9349024_SNP [dm6]	G	T	4.467e^-4	0.869	UPSTREAM CG43350 EXON CR44802
2R	11654974	2R_11654974_SNP [dm3] 2R_15767469_SNP [dm6]	C	A	4.468e^-4	0.869	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16322058	X_16322058_SNP [dm3] X_16428025_SNP [dm6]	C	T	4.472e^-4	0.869	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_zfh1
2L	15017711	2L_15017711_SNP [dm3] 2L_15017711_SNP [dm6]	G	A	4.480e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl
2R	10265631	2R_10265631_SNP [dm3] 2R_14378126_SNP [dm6]	G	T	4.484e^-4	0.869	START_GAINED Dh44-R1 UTR_5_PRIME Dh44-R1
3R	9179148	3R_9179148_SNP [dm3] 3R_13353426_SNP [dm6]	T	C	4.486e^-4	0.869	UPSTREAM mthl12 INTERGENIC
2R	8981028	2R_8981028_SNP [dm3] 2R_13093523_SNP [dm6]	T	C	4.494e^-4	0.869	INTERGENIC
3R	8094455	3R_8094455_SNP [dm3] 3R_12268733_SNP [dm6]	C	A	4.495e^-4	0.869	UPSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1885917	2L_1885917_SNP [dm3] 2L_1885917_SNP [dm6]	G	A	4.499e^-4	0.869	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15017674	2L_15017674_SNP [dm3] 2L_15017674_SNP [dm6]	G	A	4.500e^-4	0.869	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl
2L	21759578	2L_21759578_SNP [dm3] 2L_21759578_SNP [dm6]	T	C	4.501e^-4	0.869	INTRON CG1416
2L	14919039	2L_14919039_SNP [dm3] 2L_14919039_SNP [dm6]	C	T	4.505e^-4	0.869	INTRON CG42313
2R	10322070	2R_10322070_SNP [dm3] 2R_14434565_SNP [dm6]	C	T	4.505e^-4	0.869	UPSTREAM CR45277 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9049762	2R_9049762_SNP [dm3] 2R_13162257_SNP [dm6]	A	G	4.509e^-4	0.869	SYNONYMOUS_CODING Nrk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13455951	3R_13455951_SNP [dm3] 3R_17630229_SNP [dm6]	C	T	4.514e^-4	0.869	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
2L	20284943	2L_20284943_SNP [dm3] 2L_20284943_SNP [dm6]	C	G	4.516e^-4	0.869	INTERGENIC
2L	14900745	2L_14900745_SNP [dm3] 2L_14900745_SNP [dm6]	G	A	4.517e^-4	0.869	INTERGENIC
3L	10701740	3L_10701740_SNP [dm3] 3L_10708640_SNP [dm6]	G	A	4.520e^-4	0.869	INTERGENIC
3R	21484674	3R_21484674_SNP [dm3] 3R_25658952_SNP [dm6]	A	C	4.521e^-4	0.869	INTRON Tnks	TF binding site mE1_TFBS_inv
X	1392767	X_1392767_SNP [dm3] X_1498734_SNP [dm6]	T	A	4.521e^-4	0.869	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
2L	2879145	2L_2879145_SNP [dm3] 2L_2879145_SNP [dm6]	G	A	4.527e^-4	0.869	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12307022	2L_12307022_SNP [dm3] 2L_12307022_SNP [dm6]	T	C	4.532e^-4	0.869	INTRON aret
X	11702301	X_11702301_SNP [dm3] X_11808268_SNP [dm6]	G	C	4.535e^-4	0.869	DOWNSTREAM CG1578 INTERGENIC
2L	7689441	2L_7689441_SNP [dm3] 2L_7689441_SNP [dm6]	G	A	4.537e^-4	0.869	UTR_3_PRIME CG18585 & 1 other
3R	4495478	3R_4495478_SNP [dm3] 3R_8669756_SNP [dm6]	C	T	4.538e^-4	0.869	UTR_5_PRIME CG8036 UPSTREAM tRNA:Y1:85Aa & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13397852	2R_13397852_SNP [dm3] 2R_17510347_SNP [dm6]	T	G	4.539e^-4	0.869	UTR_3_PRIME CG34193
2R	1356091	2R_1356091_SNP [dm3] 2R_5468586_SNP [dm6]	A	G	4.540e^-4	0.869	INTRON CG30440
3L	11854337	3L_11854337_SNP [dm3] 3L_11861237_SNP [dm6]	G	A	4.544e^-4	0.869	INTRON CG44837
X	6418208	X_6418208_SNP [dm3] X_6524175_SNP [dm6]	C	T	4.549e^-4	0.869	UTR_5_PRIME CG42340 UPSTREAM CG3918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2980496	2R_2980496_SNP [dm3] 2R_7092991_SNP [dm6]	C	A	4.556e^-4	0.869	INTRON esn
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	4.570e^-4	0.871	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	5638648	2R_5638648_SNP [dm3] 2R_9751143_SNP [dm6]	C	T	4.599e^-4	0.876	INTERGENIC
2L	1907903	2L_1907903_SNP [dm3] 2L_1907903_SNP [dm6]	G	A	4.606e^-4	0.876	INTRON CG7337
3L	1140310	3L_1140310_SNP [dm3] 3L_1140310_SNP [dm6]	A	T	4.608e^-4	0.876	DOWNSTREAM bab2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3960561	3L_3960561_SNP [dm3] 3L_3960561_SNP [dm6]	A	G	4.621e^-4	0.877	UPSTREAM CG12605 INTRON CG12605
2L	4165600	2L_4165600_SNP [dm3] 2L_4165600_SNP [dm6]	T	C	4.622e^-4	0.877	INTRON Or24a
2R	10322001	2R_10322001_SNP [dm3] 2R_14434496_SNP [dm6]	A	T	4.637e^-4	0.878	UPSTREAM CR45277 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11854770	3L_11854770_SNP [dm3] 3L_11861670_SNP [dm6]	G	A	4.642e^-4	0.879	INTRON CG44837
2R	19224346	2R_19224346_SNP [dm3] 2R_23336823_SNP [dm6]	A	G	4.652e^-4	0.879	INTERGENIC
2L	10964290	2L_10964290_SNP [dm3] 2L_10964290_SNP [dm6]	G	T	4.664e^-4	0.879	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2R	6834580	2R_6834580_SNP [dm3] 2R_10947075_SNP [dm6]	A	T	4.672e^-4	0.879	EXON CR45228	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2R	11800881	2R_11800881_SNP [dm3] 2R_15913376_SNP [dm6]	T	A	4.680e^-4	0.879	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13459856	3R_13459856_SNP [dm3] 3R_17634134_SNP [dm6]	A	T	4.683e^-4	0.879	INTRON CG43175
X	12854909	X_12854909_INS [dm3] X_12960876_INS [dm6]	T	TTATTTTTT	4.685e^-4	0.879	DOWNSTREAM CG32642 INTERGENIC
3L	15487573	3L_15487573_SNP [dm3] 3L_15494473_SNP [dm6]	C	T	4.695e^-4	0.879	UPSTREAM CG12355 INTRON CG12355	TF binding site mE1_TFBS_Trl
2R	9453511	2R_9453511_SNP [dm3] 2R_13566006_SNP [dm6]	A	G	4.705e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	9179349	3R_9179349_SNP [dm3] 3R_13353627_SNP [dm6]	A	C	4.711e^-4	0.879	UPSTREAM mthl12 INTERGENIC

By genomic position
Variant impact
Gene name

Food_Intake_MPH phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results