DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.645e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.073476
In_3R_P	0.001191

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0118	0.0816
In_3R_P	11.4023	0.0033

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3038 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17107284	2R_17107284_SNP [dm3] 2R_21219779_SNP [dm6]	G	A	4.299e^-7	0.342	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8533689	3R_8533689_SNP [dm3] 3R_12707967_SNP [dm6]	T	A	1.180e^-6	0.342	NON_SYNONYMOUS_CODING mus308	TF binding site mE1_TFBS_sens
2R	16487275	2R_16487275_SNP [dm3] 2R_20599770_SNP [dm6]	C	G	1.520e^-6	0.342	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8204019	3R_8204019_SNP [dm3] 3R_12378297_SNP [dm6]	A	C	1.802e^-6	0.342	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
3R	13854142	3R_13854142_SNP [dm3] 3R_18028420_SNP [dm6]	C	T	1.835e^-6	0.342	INTERGENIC
2L	9766020	2L_9766020_SNP [dm3] 2L_9766020_SNP [dm6]	T	C	1.969e^-6	0.342	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
X	2105839	X_2105839_SNP [dm3] X_2211806_SNP [dm6]	G	T	2.242e^-6	0.342	INTRON msta
3R	8279247	3R_8279247_SNP [dm3] 3R_12453525_SNP [dm6]	G	A	2.620e^-6	0.342	DOWNSTREAM CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9766707	2L_9766707_SNP [dm3] 2L_9766707_SNP [dm6]	A	G	3.490e^-6	0.342	NON_SYNONYMOUS_CODING ppk18 UPSTREAM CG4017
3R	6884979	3R_6884979_INS [dm3] 3R_11059257_INS [dm6]	T	TGACCTT	3.757e^-6	0.342	INTERGENIC
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	4.977e^-6	0.342	INTERGENIC
3R	8278748	3R_8278748_SNP [dm3] 3R_12453026_SNP [dm6]	G	A	5.641e^-6	0.342	UTR_3_PRIME CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd
X	8433755	X_8433755_SNP [dm3] X_8539722_SNP [dm6]	A	G	6.048e^-6	0.342	INTRON Nrg
3L	1851422	3L_1851422_SNP [dm3] 3L_1851422_SNP [dm6]	G	C	6.274e^-6	0.342	INTRON CG13936
X	8433696	X_8433696_SNP [dm3] X_8539663_SNP [dm6]	C	T	6.562e^-6	0.342	INTRON Nrg
3R	9217965	3R_9217965_SNP [dm3] 3R_13392243_SNP [dm6]	T	G	6.565e^-6	0.342	INTRON CCHa2
2R	16487249	2R_16487249_SNP [dm3] 2R_20599744_SNP [dm6]	C	A	6.769e^-6	0.342	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10453957	3L_10453957_SNP [dm3] 3L_10460857_SNP [dm6]	G	A	6.869e^-6	0.342	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2R	11024532	2R_11024532_SNP [dm3] 2R_15137027_SNP [dm6]	C	G	7.043e^-6	0.342	INTRON chn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5742621	X_5742621_SNP [dm3] X_5848588_SNP [dm6]	C	T	7.084e^-6	0.342	INTERGENIC
3L	3883534	3L_3883534_SNP [dm3] 3L_3883534_SNP [dm6]	A	G	7.547e^-6	0.342	DOWNSTREAM CR43917 INTERGENIC
3L	12876117	3L_12876117_SNP [dm3] 3L_12883017_SNP [dm6]	C	A	7.762e^-6	0.342	INTERGENIC
3R	8381991	3R_8381991_SNP [dm3] 3R_12556269_SNP [dm6]	C	T	7.817e^-6	0.342	INTRON Octbeta2R
2L	11370376	2L_11370376_SNP [dm3] 2L_11370376_SNP [dm6]	G	A	7.889e^-6	0.342	INTRON salr
3L	3883537	3L_3883537_SNP [dm3] 3L_3883537_SNP [dm6]	C	T	8.115e^-6	0.342	DOWNSTREAM CR43917 INTERGENIC
2L	8217978	2L_8217978_SNP [dm3] 2L_8217978_SNP [dm6]	A	G	8.216e^-6	0.342	UTR_5_PRIME CG8292 DOWNSTREAM Snx6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8423178	3R_8423178_SNP [dm3] 3R_12597456_SNP [dm6]	G	A	8.245e^-6	0.342	INTERGENIC
3R	8416003	3R_8416003_SNP [dm3] 3R_12590281_SNP [dm6]	G	A	8.328e^-6	0.342	INTRON Octbeta2R
3R	8425752	3R_8425752_SNP [dm3] 3R_12600030_SNP [dm6]	C	A	8.328e^-6	0.342	INTERGENIC
3R	8426517	3R_8426517_SNP [dm3] 3R_12600795_SNP [dm6]	C	T	8.328e^-6	0.342	INTERGENIC
3R	8427469	3R_8427469_SNP [dm3] 3R_12601747_SNP [dm6]	A	C	8.328e^-6	0.342	INTERGENIC
2R	12023230	2R_12023230_INS [dm3] 2R_16135725_INS [dm6]	C	CTCGC	8.569e^-6	0.342	INTRON spin	TF binding site mE1_TFBS_hkb
3R	8411355	3R_8411355_SNP [dm3] 3R_12585633_SNP [dm6]	T	A	8.895e^-6	0.342	INTRON Octbeta2R
3R	8470406	3R_8470406_SNP [dm3] 3R_12644684_SNP [dm6]	G	C	9.237e^-6	0.342	INTERGENIC
3R	8421207	3R_8421207_SNP [dm3] 3R_12595485_SNP [dm6]	C	T	9.443e^-6	0.342	UTR_5_PRIME Octbeta2R INTRON Octbeta2R	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2251336	2L_2251336_SNP [dm3] 2L_2251336_SNP [dm6]	A	G	9.467e^-6	0.342	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC
3L	12073733	3L_12073733_SNP [dm3] 3L_12080633_SNP [dm6]	T	C	9.577e^-6	0.342	INTRON Sema-5c	TF binding site BDTNP1_TFBS_Med
3R	8156335	3R_8156335_SNP [dm3] 3R_12330613_SNP [dm6]	A	C	9.642e^-6	0.342	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8164115	3R_8164115_SNP [dm3] 3R_12338393_SNP [dm6]	C	T	9.642e^-6	0.342	INTRON CR44941
3R	8352681	3R_8352681_SNP [dm3] 3R_12526959_SNP [dm6]	G	A	9.817e^-6	0.342	INTRON Octbeta3R & 1 other
3R	8451840	3R_8451840_SNP [dm3] 3R_12626118_SNP [dm6]	G	C	9.831e^-6	0.342	SYNONYMOUS_CODING Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	9113341	3L_9113341_SNP [dm3] 3L_9120241_SNP [dm6]	A	C	9.900e^-6	0.342	INTRON bol
3R	8156176	3R_8156176_SNP [dm3] 3R_12330454_SNP [dm6]	G	A	1.000e^-5	0.342	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8533318	3R_8533318_SNP [dm3] 3R_12707596_SNP [dm6]	G	T	1.014e^-5	0.342	NON_SYNONYMOUS_CODING mus308
3R	8453924	3R_8453924_SNP [dm3] 3R_12628202_SNP [dm6]	C	A	1.019e^-5	0.342	UTR_5_PRIME Snx3 UPSTREAM Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8539332	3R_8539332_SNP [dm3] 3R_12713610_SNP [dm6]	G	A	1.031e^-5	0.342	SYNONYMOUS_CODING Men	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8442785	3R_8442785_SNP [dm3] 3R_12617063_SNP [dm6]	A	T	1.048e^-5	0.342	INTERGENIC
3R	8383782	3R_8383782_SNP [dm3] 3R_12558060_SNP [dm6]	C	T	1.056e^-5	0.342	INTRON Octbeta2R
2R	19145065	2R_19145065_SNP [dm3] 2R_23257542_SNP [dm6]	C	T	1.058e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2249813	2L_2249813_SNP [dm3] 2L_2249813_SNP [dm6]	T	A	1.061e^-5	0.342	DOWNSTREAM Ser12 INTERGENIC
3R	8135405	3R_8135405_SNP [dm3] 3R_12309683_SNP [dm6]	A	C	1.084e^-5	0.342	INTERGENIC
3R	8147005	3R_8147005_SNP [dm3] 3R_12321283_SNP [dm6]	C	T	1.084e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	8571924	3R_8571924_SNP [dm3] 3R_12746202_SNP [dm6]	T	G	1.088e^-5	0.342	UTR_3_PRIME beat-Vc
X	6678498	X_6678498_SNP [dm3] X_6784465_SNP [dm6]	C	T	1.109e^-5	0.342	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2250009	2L_2250009_DEL [dm3] 2L_2250009_DEL [dm6]	CT	C	1.118e^-5	0.342	DOWNSTREAM Ser12 INTERGENIC
3R	8373139	3R_8373139_SNP [dm3] 3R_12547417_SNP [dm6]	G	C	1.168e^-5	0.342	UTR_5_PRIME Octbeta3R
X	8433732	X_8433732_SNP [dm3] X_8539699_SNP [dm6]	G	T	1.174e^-5	0.342	INTRON Nrg
3R	8369544	3R_8369544_SNP [dm3] 3R_12543822_SNP [dm6]	C	A	1.174e^-5	0.342	INTRON Octbeta3R
3L	9113339	3L_9113339_SNP [dm3] 3L_9120239_SNP [dm6]	C	T	1.190e^-5	0.342	INTRON bol
2R	16486430	2R_16486430_SNP [dm3] 2R_20598925_SNP [dm6]	G	A	1.192e^-5	0.342	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13858081	3R_13858081_SNP [dm3] 3R_18032359_SNP [dm6]	G	T	1.198e^-5	0.342	INTERGENIC
3R	13867841	3R_13867841_SNP [dm3] 3R_18042119_SNP [dm6]	T	C	1.220e^-5	0.342	INTERGENIC
3R	8382154	3R_8382154_SNP [dm3] 3R_12556432_SNP [dm6]	C	A	1.222e^-5	0.342	INTRON Octbeta2R
2L	18986450	2L_18986450_SNP [dm3] 2L_18986450_SNP [dm6]	T	C	1.224e^-5	0.342	INTRON Swip-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	17717884	3L_17717884_SNP [dm3] 3L_17724784_SNP [dm6]	A	G	1.251e^-5	0.342	SYNONYMOUS_CODING CG6052 INTRON Ccn
2L	2250387	2L_2250387_SNP [dm3] 2L_2250387_SNP [dm6]	A	G	1.256e^-5	0.342	DOWNSTREAM Ser12 INTERGENIC
3L	1851606	3L_1851606_SNP [dm3] 3L_1851606_SNP [dm6]	T	G	1.265e^-5	0.342	INTRON CG13936	TF binding site mE1_TFBS_cad
3R	13869799	3R_13869799_SNP [dm3] 3R_18044077_SNP [dm6]	A	T	1.269e^-5	0.342	INTERGENIC
2R	16486762	2R_16486762_SNP [dm3] 2R_20599257_SNP [dm6]	A	G	1.316e^-5	0.342	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	1.344e^-5	0.342	INTERGENIC
2L	10107744	2L_10107744_SNP [dm3] 2L_10107744_SNP [dm6]	C	A	1.355e^-5	0.342	INTRON CG44153 & 1 other
3R	8367190	3R_8367190_SNP [dm3] 3R_12541468_SNP [dm6]	C	G	1.371e^-5	0.342	INTRON Octbeta3R
X	8433736	X_8433736_SNP [dm3] X_8539703_SNP [dm6]	C	G	1.382e^-5	0.342	INTRON Nrg
3R	8422633	3R_8422633_SNP [dm3] 3R_12596911_SNP [dm6]	C	G	1.408e^-5	0.342	INTERGENIC
2L	2249820	2L_2249820_SNP [dm3] 2L_2249820_SNP [dm6]	C	T	1.413e^-5	0.342	DOWNSTREAM Ser12 INTERGENIC
3R	14974114	3R_14974114_SNP [dm3] 3R_19148392_SNP [dm6]	A	G	1.418e^-5	0.342	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	11453118	3L_11453118_SNP [dm3] 3L_11460018_SNP [dm6]	G	T	1.430e^-5	0.342	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8362287	3R_8362287_SNP [dm3] 3R_12536565_SNP [dm6]	A	G	1.450e^-5	0.342	INTRON Octbeta3R
2R	3776384	2R_3776384_DEL [dm3] 2R_7888879_DEL [dm6]	GAATTTTA	G	1.459e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4754783	3L_4754783_SNP [dm3] 3L_4754783_SNP [dm6]	T	A	1.482e^-5	0.342	UPSTREAM CR43881 INTRON RhoGEF64C
3R	8200799	3R_8200799_SNP [dm3] 3R_12375077_SNP [dm6]	C	A	1.491e^-5	0.342	UPSTREAM GstD5 DOWNSTREAM GstD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3776945	2R_3776945_SNP [dm3] 2R_7889440_SNP [dm6]	C	A	1.514e^-5	0.342	UPSTREAM CG30377 INTERGENIC
3L	9113362	3L_9113362_SNP [dm3] 3L_9120262_SNP [dm6]	C	T	1.514e^-5	0.342	INTRON bol
3R	25410652	3R_25410652_DEL [dm3] 3R_29584930_DEL [dm6]	AA	A	1.574e^-5	0.351	INTERGENIC
3R	8527509	3R_8527509_SNP [dm3] 3R_12701787_SNP [dm6]	T	A	1.610e^-5	0.354	INTRON Past1
3R	8514953	3R_8514953_SNP [dm3] 3R_12689231_SNP [dm6]	C	T	1.625e^-5	0.354	UTR_5_PRIME kar DOWNSTREAM Su_fu_	TF binding site mE1_TFBS_chinmo
2L	16762818	2L_16762818_SNP [dm3] 2L_16762818_SNP [dm6]	C	A	1.645e^-5	0.355	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9113360	3L_9113360_SNP [dm3] 3L_9120260_SNP [dm6]	A	T	1.664e^-5	0.355	INTRON bol
2L	10079342	2L_10079342_SNP [dm3] 2L_10079342_SNP [dm6]	A	G	1.699e^-5	0.358	INTRON CG44153
3L	11215510	3L_11215510_SNP [dm3] 3L_11222410_SNP [dm6]	C	T	1.716e^-5	0.358	INTRON CG42671
3L	12875986	3L_12875986_SNP [dm3] 3L_12882886_SNP [dm6]	T	C	1.739e^-5	0.358	INTERGENIC
3L	17717872	3L_17717872_SNP [dm3] 3L_17724772_SNP [dm6]	G	T	1.786e^-5	0.364	SYNONYMOUS_CODING CG6052 INTRON Ccn
2R	9826796	2R_9826796_SNP [dm3] 2R_13939291_SNP [dm6]	C	T	1.840e^-5	0.367	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13848782	3R_13848782_SNP [dm3] 3R_18023060_SNP [dm6]	A	T	1.863e^-5	0.367	UTR_3_PRIME CG7785 UPSTREAM CG7794
2R	3777601	2R_3777601_SNP [dm3] 2R_7890096_SNP [dm6]	T	C	1.879e^-5	0.367	START_GAINED CG30377 UTR_5_PRIME CG30377
2L	2250128	2L_2250128_SNP [dm3] 2L_2250128_SNP [dm6]	A	C	1.883e^-5	0.367	DOWNSTREAM Ser12 INTERGENIC
2R	8984745	2R_8984745_SNP [dm3] 2R_13097240_SNP [dm6]	G	A	1.901e^-5	0.367	INTERGENIC
X	5042890	X_5042890_SNP [dm3] X_5148857_SNP [dm6]	C	G	2.004e^-5	0.372	INTRON rg & 1 other
3L	11215468	3L_11215468_SNP [dm3] 3L_11222368_SNP [dm6]	A	T	2.011e^-5	0.372	INTRON CG42671
3R	8132514	3R_8132514_SNP [dm3] 3R_12306792_SNP [dm6]	C	T	2.034e^-5	0.372	INTERGENIC
3R	25410182	3R_25410182_SNP [dm3] 3R_29584460_SNP [dm6]	C	A	2.041e^-5	0.372	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8094866	3R_8094866_SNP [dm3] 3R_12269144_SNP [dm6]	G	A	2.050e^-5	0.372	INTRON svp & 1 other
3L	13789012	3L_13789012_SNP [dm3] 3L_13795912_SNP [dm6]	C	T	2.066e^-5	0.372	INTRON bru-3
3L	13789013	3L_13789013_SNP [dm3] 3L_13795913_SNP [dm6]	C	T	2.066e^-5	0.372	INTRON bru-3
3R	14125081	3R_14125081_SNP [dm3] 3R_18299359_SNP [dm6]	C	T	2.085e^-5	0.372	UTR_5_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11627119	3L_11627119_SNP [dm3] 3L_11634019_SNP [dm6]	A	T	2.128e^-5	0.376	UPSTREAM CR45158 INTRON CG32091
3R	8094862	3R_8094862_SNP [dm3] 3R_12269140_SNP [dm6]	C	T	2.163e^-5	0.377	INTRON svp & 1 other
3L	8543567	3L_8543567_SNP [dm3] 3L_8550467_SNP [dm6]	G	T	2.171e^-5	0.377	INTRON rhea
3R	6938247	3R_6938247_SNP [dm3] 3R_11112525_SNP [dm6]	T	C	2.203e^-5	0.379	INTERGENIC
3R	13869894	3R_13869894_INS [dm3] 3R_18044172_INS [dm6]	G	GAG	2.252e^-5	0.382	INTERGENIC
2R	18841412	2R_18841412_SNP [dm3] 2R_22953889_SNP [dm6]	T	C	2.266e^-5	0.382	UPSTREAM CR32835 INTERGENIC
3L	11336978	3L_11336978_SNP [dm3] 3L_11343878_SNP [dm6]	T	C	2.281e^-5	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	9693939	3L_9693939_SNP [dm3] 3L_9700839_SNP [dm6]	T	C	2.335e^-5	0.388	SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
3R	18529176	3R_18529176_SNP [dm3] 3R_22703454_SNP [dm6]	C	T	2.375e^-5	0.391	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6884258	3R_6884258_DEL [dm3] 3R_11058536_DEL [dm6]	TGAGCAGTTTTATATTT...	T	2.406e^-5	0.392	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2249808	2L_2249808_SNP [dm3] 2L_2249808_SNP [dm6]	T	G	2.656e^-5	0.429	DOWNSTREAM Ser12 INTERGENIC
3L	2606496	3L_2606496_SNP [dm3] 3L_2606496_SNP [dm6]	C	A	2.683e^-5	0.43	INTRON Pxn
X	17875306	X_17875306_SNP [dm3] X_17981273_SNP [dm6]	C	T	2.728e^-5	0.431	INTRON Sh
3R	14103834	3R_14103834_SNP [dm3] 3R_18278112_SNP [dm6]	T	G	2.752e^-5	0.431	DOWNSTREAM CG7142 INTRON eIF-1A
X	8433765	X_8433765_SNP [dm3] X_8539732_SNP [dm6]	T	A	2.774e^-5	0.431	INTRON Nrg
3R	11439167	3R_11439167_SNP [dm3] 3R_15613445_SNP [dm6]	C	T	2.781e^-5	0.431	INTERGENIC
X	7575367	X_7575367_SNP [dm3] X_7681334_SNP [dm6]	G	A	2.869e^-5	0.438	UPSTREAM CR45666 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13869800	3R_13869800_SNP [dm3] 3R_18044078_SNP [dm6]	G	T	2.902e^-5	0.438	INTERGENIC
2R	18838075	2R_18838075_SNP [dm3] 2R_22950552_SNP [dm6]	C	T	2.930e^-5	0.438	DOWNSTREAM CR32835 INTERGENIC
2R	3726335	2R_3726335_SNP [dm3] 2R_7838830_SNP [dm6]	G	A	2.932e^-5	0.438	INTRON Dgk
X	9125894	X_9125894_SNP [dm3] X_9231861_SNP [dm6]	T	C	2.971e^-5	0.438	SYNONYMOUS_CODING CG12121 DOWNSTREAM Ir8a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18101362	2R_18101362_SNP [dm3] 2R_22213857_SNP [dm6]	G	A	2.993e^-5	0.438	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	18101376	2R_18101376_SNP [dm3] 2R_22213871_SNP [dm6]	A	G	2.993e^-5	0.438	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	813729	3L_813729_SNP [dm3] 3L_813729_SNP [dm6]	C	A	3.068e^-5	0.445	EXON CR44537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13544596	2L_13544596_INS [dm3] 2L_13544596_INS [dm6]	T	TG	3.103e^-5	0.445	DOWNSTREAM CG16853 INTRON B4
X	2620544	X_2620544_SNP [dm3] X_2726511_SNP [dm6]	G	A	3.107e^-5	0.445	UTR_3_PRIME fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17876939	3L_17876939_SNP [dm3] 3L_17883839_SNP [dm6]	C	G	3.156e^-5	0.446	NON_SYNONYMOUS_CODING CG5506 DOWNSTREAM CG7408
2L	703437	2L_703437_SNP [dm3] 2L_703437_SNP [dm6]	G	A	3.165e^-5	0.446	INTRON ds
2R	16663147	2R_16663147_SNP [dm3] 2R_20775642_SNP [dm6]	G	A	3.234e^-5	0.452	DOWNSTREAM CG43709 & 1 other INTERGENIC
2L	2251390	2L_2251390_SNP [dm3] 2L_2251390_SNP [dm6]	A	T	3.279e^-5	0.452	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC
2L	10107792	2L_10107792_SNP [dm3] 2L_10107792_SNP [dm6]	C	A	3.292e^-5	0.452	SYNONYMOUS_CODING CG34109 INTRON CG44153
2R	5072013	2R_5072013_SNP [dm3] 2R_9184508_SNP [dm6]	C	A	3.298e^-5	0.452	DOWNSTREAM CR44284 INTRON ltd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8990694	2R_8990694_SNP [dm3] 2R_13103189_SNP [dm6]	G	C	3.363e^-5	0.452	UPSTREAM CG44341 INTERGENIC
3R	13855403	3R_13855403_SNP [dm3] 3R_18029681_SNP [dm6]	C	T	3.365e^-5	0.452	INTERGENIC
2R	19145063	2R_19145063_SNP [dm3] 2R_23257540_SNP [dm6]	A	T	3.373e^-5	0.452	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18117647	2L_18117647_SNP [dm3] 2L_18117647_SNP [dm6]	A	C	3.455e^-5	0.457	INTERGENIC
3R	8220319	3R_8220319_SNP [dm3] 3R_12394597_SNP [dm6]	G	A	3.459e^-5	0.457	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8947421	3R_8947421_SNP [dm3] 3R_13121699_SNP [dm6]	A	T	3.530e^-5	0.459	DOWNSTREAM 2mit INTRON timeout
3L	5717704	3L_5717704_SNP [dm3] 3L_5724604_SNP [dm6]	G	T	3.533e^-5	0.459	INTRON sif
X	14558831	X_14558831_SNP [dm3] X_14664798_SNP [dm6]	C	T	3.561e^-5	0.459	INTERGENIC
3R	8961157	3R_8961157_SNP [dm3] 3R_13135435_SNP [dm6]	C	T	3.571e^-5	0.459	INTRON timeout & 2 others
3R	6890454	3R_6890454_SNP [dm3] 3R_11064732_SNP [dm6]	C	A	3.673e^-5	0.465	INTERGENIC
X	8433767	X_8433767_SNP [dm3] X_8539734_SNP [dm6]	T	G	3.689e^-5	0.465	INTRON Nrg
3R	5211196	3R_5211196_SNP [dm3] 3R_9385474_SNP [dm6]	C	T	3.719e^-5	0.465	INTRON FER
3R	8525694	3R_8525694_SNP [dm3] 3R_12699972_SNP [dm6]	C	A	3.737e^-5	0.465	INTRON Past1
2R	18443095	2R_18443095_SNP [dm3] 2R_22555590_SNP [dm6]	G	A	3.743e^-5	0.465	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13694664	3R_13694664_SNP [dm3] 3R_17868942_SNP [dm6]	A	G	3.783e^-5	0.467	NON_SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
X	2105859	X_2105859_SNP [dm3] X_2211826_SNP [dm6]	A	C	3.845e^-5	0.467	INTRON msta
2L	12804342	2L_12804342_SNP [dm3] 2L_12804342_SNP [dm6]	A	G	3.874e^-5	0.467	INTERGENIC
2R	5997794	2R_5997794_SNP [dm3] 2R_10110289_SNP [dm6]	C	T	3.943e^-5	0.467	SYNONYMOUS_CODING Pfk UPSTREAM Pfk DOWNSTREAM 14-3-3zeta
3L	11220294	3L_11220294_SNP [dm3] 3L_11227194_SNP [dm6]	G	T	3.963e^-5	0.467	INTRON CG42671
2L	10079349	2L_10079349_INS [dm3] 2L_10079349_INS [dm6]	A	AA	3.971e^-5	0.467	INTRON CG44153
2L	17853974	2L_17853974_SNP [dm3] 2L_17853974_SNP [dm6]	A	T	3.977e^-5	0.467	INTRON CadN2
X	18762191	X_18762191_DEL [dm3] X_18868158_DEL [dm6]	TGAAGTGGCCCCAATTT...	C	3.999e^-5	0.467	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8616559	3R_8616559_SNP [dm3] 3R_12790837_SNP [dm6]	T	A	4.045e^-5	0.467	INTERGENIC
2L	12802871	2L_12802871_SNP [dm3] 2L_12802871_SNP [dm6]	G	A	4.059e^-5	0.467	INTERGENIC
3R	14169204	3R_14169204_SNP [dm3] 3R_18343482_SNP [dm6]	T	C	4.121e^-5	0.467	INTRON CG15803
3R	8698853	3R_8698853_SNP [dm3] 3R_12873131_SNP [dm6]	T	G	4.130e^-5	0.467	INTERGENIC
3R	6954126	3R_6954126_SNP [dm3] 3R_11128404_SNP [dm6]	G	A	4.146e^-5	0.467	UPSTREAM Ugt86Dd INTERGENIC
3R	8465949	3R_8465949_SNP [dm3] 3R_12640227_SNP [dm6]	G	A	4.179e^-5	0.467	UTR_3_PRIME CG6753 DOWNSTREAM CG11608	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3237250	2L_3237250_SNP [dm3] 2L_3237250_SNP [dm6]	G	C	4.183e^-5	0.467	INTERGENIC
X	20630554	X_20630554_SNP [dm3] X_20759527_SNP [dm6]	T	C	4.196e^-5	0.467	DOWNSTREAM CR43838 EXON CR44710
3L	8543637	3L_8543637_SNP [dm3] 3L_8550537_SNP [dm6]	A	T	4.212e^-5	0.467	INTRON rhea
3L	9874939	3L_9874939_SNP [dm3] 3L_9881839_SNP [dm6]	A	T	4.225e^-5	0.467	INTRON CG34382
3R	22461013	3R_22461013_SNP [dm3] 3R_26635291_SNP [dm6]	A	C	4.276e^-5	0.467	NON_SYNONYMOUS_CODING TwdlR DOWNSTREAM TwdlH
X	16564785	X_16564785_DEL [dm3] X_16670752_DEL [dm6]	ATGAAAAAGCGCAGA...	A	4.277e^-5	0.467	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16711952	2L_16711952_SNP [dm3] 2L_16711952_SNP [dm6]	C	G	4.309e^-5	0.467	INTRON CG31808
2R	19009697	2R_19009697_SNP [dm3] 2R_23122174_SNP [dm6]	T	G	4.342e^-5	0.467	INTERGENIC
2L	12302140	2L_12302140_SNP [dm3] 2L_12302140_SNP [dm6]	A	T	4.428e^-5	0.467	INTRON aret
3L	2519124	3L_2519124_SNP [dm3] 3L_2519124_SNP [dm6]	T	A	4.452e^-5	0.467	DOWNSTREAM CR45170 INTRON Spn
3L	16767741	3L_16767741_SNP [dm3] 3L_16774641_SNP [dm6]	C	G	4.494e^-5	0.467	SYNONYMOUS_CODING Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13101861	3R_13101861_SNP [dm3] 3R_17276139_SNP [dm6]	G	T	4.499e^-5	0.467	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17946976	2R_17946976_SNP [dm3] 2R_22059471_SNP [dm6]	C	T	4.502e^-5	0.467	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	16450234	3L_16450234_SNP [dm3] 3L_16457134_SNP [dm6]	G	A	4.571e^-5	0.467	INTRON CG33158
3R	8561838	3R_8561838_SNP [dm3] 3R_12736116_SNP [dm6]	C	T	4.576e^-5	0.467	INTERGENIC
2R	12040124	2R_12040124_SNP [dm3] 2R_16152619_SNP [dm6]	C	T	4.640e^-5	0.467	INTRON lbk
X	16564593	X_16564593_SNP [dm3] X_16670560_SNP [dm6]	A	T	4.678e^-5	0.467	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12723525	2L_12723525_SNP [dm3] 2L_12723525_SNP [dm6]	C	T	4.814e^-5	0.467	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	8897541	2R_8897541_SNP [dm3] 2R_13010036_SNP [dm6]	C	A	4.833e^-5	0.467	INTERGENIC
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	4.856e^-5	0.467	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	2935089	2R_2935089_SNP [dm3] 2R_7047584_SNP [dm6]	G	T	4.858e^-5	0.467	SYNONYMOUS_CODING Tsp42El
3R	13117445	3R_13117445_SNP [dm3] 3R_17291723_SNP [dm6]	A	C	4.866e^-5	0.467	INTERGENIC
3L	2519131	3L_2519131_SNP [dm3] 3L_2519131_SNP [dm6]	G	T	4.893e^-5	0.467	DOWNSTREAM CR45170 INTRON Spn
2L	15502091	2L_15502091_SNP [dm3] 2L_15502091_SNP [dm6]	A	G	4.894e^-5	0.467	INTRON lace
3L	6496565	3L_6496565_SNP [dm3] 3L_6503465_SNP [dm6]	A	C	4.925e^-5	0.467	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	8391488	3R_8391488_SNP [dm3] 3R_12565766_SNP [dm6]	A	G	4.928e^-5	0.467	INTRON Octbeta2R
2R	15987820	2R_15987820_SNP [dm3] 2R_20100315_SNP [dm6]	G	C	5.017e^-5	0.467	INTERGENIC
3L	11453043	3L_11453043_DEL [dm3] 3L_11459943_DEL [dm6]	ACA	A	5.059e^-5	0.467	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9295994	3L_9295994_SNP [dm3] 3L_9302894_SNP [dm6]	T	C	5.060e^-5	0.467	INTERGENIC
2L	10560051	2L_10560051_SNP [dm3] 2L_10560051_SNP [dm6]	A	G	5.085e^-5	0.467	INTRON Trim9
2R	4926539	2R_4926539_SNP [dm3] 2R_9039034_SNP [dm6]	G	A	5.091e^-5	0.467	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	8390298	X_8390298_SNP [dm3] X_8496265_SNP [dm6]	A	C	5.131e^-5	0.467	INTRON CG33181
2L	18117637	2L_18117637_SNP [dm3] 2L_18117637_SNP [dm6]	T	C	5.132e^-5	0.467	INTERGENIC
2L	2251300	2L_2251300_SNP [dm3] 2L_2251300_SNP [dm6]	T	A	5.209e^-5	0.467	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC
3L	14626325	3L_14626325_SNP [dm3] 3L_14633225_SNP [dm6]	C	T	5.223e^-5	0.467	SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_Trl
2R	8984401	2R_8984401_SNP [dm3] 2R_13096896_SNP [dm6]	T	A	5.240e^-5	0.467	INTERGENIC
3L	11568376	3L_11568376_SNP [dm3] 3L_11575276_SNP [dm6]	C	G	5.304e^-5	0.467	SYNONYMOUS_CODING CG33489 UPSTREAM CG33490	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12302133	2L_12302133_SNP [dm3] 2L_12302133_SNP [dm6]	G	A	5.315e^-5	0.467	INTRON aret
3R	11302622	3R_11302622_SNP [dm3] 3R_15476900_SNP [dm6]	C	G	5.340e^-5	0.467	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16487284	2R_16487284_SNP [dm3] 2R_20599779_SNP [dm6]	T	C	5.347e^-5	0.467	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13388137	3L_13388137_SNP [dm3] 3L_13395037_SNP [dm6]	C	A	5.348e^-5	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	13145450	2R_13145450_SNP [dm3] 2R_17257945_SNP [dm6]	C	A	5.348e^-5	0.467	UPSTREAM CG43108 INTRON mbl
3R	8340824	3R_8340824_SNP [dm3] 3R_12515102_SNP [dm6]	G	A	5.353e^-5	0.467	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	8360899	3R_8360899_SNP [dm3] 3R_12535177_SNP [dm6]	T	A	5.353e^-5	0.467	INTRON Octbeta3R
2R	15926153	2R_15926153_SNP [dm3] 2R_20038648_SNP [dm6]	G	A	5.375e^-5	0.467	INTERGENIC
3R	22375407	3R_22375407_SNP [dm3] 3R_26549685_SNP [dm6]	T	A	5.382e^-5	0.467	INTRON scrib	TF binding site BDTNP1_TFBS_twi
X	20647888	X_20647888_SNP [dm3] X_20776861_SNP [dm6]	A	C	5.410e^-5	0.467	INTRON shakB
X	3868877	X_3868877_DEL [dm3] X_3974844_DEL [dm6]	CTT	C	5.447e^-5	0.467	INTERGENIC
X	3868881	X_3868881_SNP [dm3] X_3974848_SNP [dm6]	T	C	5.447e^-5	0.467	INTERGENIC
X	3868889	X_3868889_SNP [dm3] X_3974856_SNP [dm6]	G	A	5.447e^-5	0.467	INTERGENIC
X	3868891	X_3868891_SNP [dm3] X_3974858_SNP [dm6]	G	A	5.447e^-5	0.467	INTERGENIC
2R	14556149	2R_14556149_SNP [dm3] 2R_18668644_SNP [dm6]	A	G	5.467e^-5	0.467	INTRON edl
2R	8986997	2R_8986997_SNP [dm3] 2R_13099492_SNP [dm6]	A	T	5.551e^-5	0.467	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16564601	X_16564601_SNP [dm3] X_16670568_SNP [dm6]	A	C	5.552e^-5	0.467	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3198505	2R_3198505_SNP [dm3] 2R_7311000_SNP [dm6]	G	A	5.574e^-5	0.467	UPSTREAM CG12164 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11624009	3L_11624009_SNP [dm3] 3L_11630909_SNP [dm6]	G	C	5.586e^-5	0.467	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3R	6992615	3R_6992615_SNP [dm3] 3R_11166893_SNP [dm6]	A	C	5.590e^-5	0.467	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
2L	12136404	2L_12136404_SNP [dm3] 2L_12136404_SNP [dm6]	T	C	5.602e^-5	0.467	INTERGENIC
3L	14876454	3L_14876454_SNP [dm3] 3L_14883354_SNP [dm6]	G	A	5.602e^-5	0.467	INTERGENIC
3R	22421632	3R_22421632_SNP [dm3] 3R_26595910_SNP [dm6]	C	T	5.607e^-5	0.467	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3L	17879736	3L_17879736_SNP [dm3] 3L_17886636_SNP [dm6]	G	A	5.713e^-5	0.47	SYNONYMOUS_CODING CG16775	TF binding site mE1_TFBS_cad
2R	16485249	2R_16485249_SNP [dm3] 2R_20597744_SNP [dm6]	T	C	5.717e^-5	0.47	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16485250	2R_16485250_SNP [dm3] 2R_20597745_SNP [dm6]	C	T	5.717e^-5	0.47	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16564602	X_16564602_SNP [dm3] X_16670569_SNP [dm6]	T	C	5.770e^-5	0.471	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15502101	2L_15502101_MNP [dm3] 2L_15502101_MNP [dm6]	CTC	TCT	5.781e^-5	0.471	INTRON lace
3L	12073672	3L_12073672_SNP [dm3] 3L_12080572_SNP [dm6]	G	C	5.846e^-5	0.475	INTRON Sema-5c	TF binding site BDTNP1_TFBS_Med
3L	9113414	3L_9113414_SNP [dm3] 3L_9120314_SNP [dm6]	G	C	5.934e^-5	0.476	INTRON bol
2L	10560050	2L_10560050_SNP [dm3] 2L_10560050_SNP [dm6]	T	C	5.936e^-5	0.476	INTRON Trim9
3L	16197351	3L_16197351_SNP [dm3] 3L_16204251_SNP [dm6]	A	G	5.937e^-5	0.476	INTERGENIC
X	9126700	X_9126700_SNP [dm3] X_9232667_SNP [dm6]	C	A	6.025e^-5	0.48	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	12055474	3L_12055474_SNP [dm3] 3L_12062374_SNP [dm6]	C	G	6.037e^-5	0.48	INTRON rols	TF binding site BDTNP1_TFBS_da
2L	15502113	2L_15502113_SNP [dm3] 2L_15502113_SNP [dm6]	A	G	6.125e^-5	0.483	SPLICE_SITE_REGION lace INTRON lace
X	9588075	X_9588075_SNP [dm3] X_9694042_SNP [dm6]	C	G	6.145e^-5	0.483	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19068571	2R_19068571_SNP [dm3] 2R_23181048_SNP [dm6]	T	C	6.195e^-5	0.483	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12839968	3L_12839968_SNP [dm3] 3L_12846868_SNP [dm6]	A	C	6.214e^-5	0.483	INTRON CG10948	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	3887381	3R_3887381_SNP [dm3] 3R_8061659_SNP [dm6]	G	C	6.251e^-5	0.483	INTRON mAChR-B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16487462	2R_16487462_SNP [dm3] 2R_20599957_SNP [dm6]	C	T	6.279e^-5	0.483	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19647456	2R_19647456_SNP [dm3] 2R_23759933_SNP [dm6]	G	T	6.285e^-5	0.483	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11986587	2R_11986587_SNP [dm3] 2R_16099082_SNP [dm6]	C	T	6.312e^-5	0.483	SYNONYMOUS_CODING mRpL34 UPSTREAM Dg DOWNSTREAM CG8414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17863165	2L_17863165_SNP [dm3] 2L_17863165_SNP [dm6]	A	T	6.384e^-5	0.483	INTRON CadN2
3R	14169264	3R_14169264_SNP [dm3] 3R_18343542_SNP [dm6]	A	G	6.402e^-5	0.483	INTRON CG15803
3L	8348302	3L_8348302_SNP [dm3] 3L_8355202_SNP [dm6]	C	G	6.404e^-5	0.483	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 UPSTREAM mir-4913
2R	16486935	2R_16486935_SNP [dm3] 2R_20599430_SNP [dm6]	G	A	6.421e^-5	0.483	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16428429	2L_16428429_SNP [dm3] 2L_16428429_SNP [dm6]	G	A	6.452e^-5	0.483	INTRON CG5888
2R	19312397	2R_19312397_SNP [dm3] 2R_23424874_SNP [dm6]	G	A	6.461e^-5	0.483	INTRON CG9815
X	6623499	X_6623499_SNP [dm3] X_6729466_SNP [dm6]	A	T	6.469e^-5	0.483	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17653652	3L_17653652_SNP [dm3] 3L_17660552_SNP [dm6]	A	G	6.571e^-5	0.489	UTR_3_PRIME Crtc
2L	11370883	2L_11370883_SNP [dm3] 2L_11370883_SNP [dm6]	C	A	6.628e^-5	0.491	INTRON salr
2L	13529927	2L_13529927_SNP [dm3] 2L_13529927_SNP [dm6]	C	T	6.700e^-5	0.491	UPSTREAM CG33642 DOWNSTREAM CG33641 INTRON B4
2L	8612293	2L_8612293_SNP [dm3] 2L_8612293_SNP [dm6]	C	T	6.725e^-5	0.491	INTRON Sema-1a
3L	9297074	3L_9297074_SNP [dm3] 3L_9303974_SNP [dm6]	G	A	6.726e^-5	0.491	INTERGENIC
2R	16485830	2R_16485830_SNP [dm3] 2R_20598325_SNP [dm6]	C	G	6.727e^-5	0.491	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9125615	X_9125615_SNP [dm3] X_9231582_SNP [dm6]	G	A	6.795e^-5	0.492	INTRON CG12121	TF binding site mE1_TFBS_sens
3R	14006419	3R_14006419_SNP [dm3] 3R_18180697_SNP [dm6]	T	C	6.795e^-5	0.492	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	6.927e^-5	0.494	SYNONYMOUS_CODING Plod
2L	8217903	2L_8217903_SNP [dm3] 2L_8217903_SNP [dm6]	T	G	6.934e^-5	0.494	UTR_5_PRIME CG8292 DOWNSTREAM Snx6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17866115	2L_17866115_DEL [dm3] 2L_17866115_DEL [dm6]	AA	A	6.951e^-5	0.494	INTRON CadN2
X	19722981	X_19722981_SNP [dm3] X_19828948_SNP [dm6]	T	A	6.967e^-5	0.494	INTERGENIC
3L	11196804	3L_11196804_SNP [dm3] 3L_11203704_SNP [dm6]	A	T	6.972e^-5	0.494	INTRON Plod
3L	10832479	3L_10832479_SNP [dm3] 3L_10839379_SNP [dm6]	C	A	6.980e^-5	0.494	INTERGENIC
2L	17851700	2L_17851700_SNP [dm3] 2L_17851700_SNP [dm6]	T	C	7.003e^-5	0.494	INTRON CadN2
3L	7640055	3L_7640055_SNP [dm3] 3L_7646955_SNP [dm6]	C	A	7.068e^-5	0.494	INTERGENIC
X	16564607	X_16564607_INS [dm3] X_16670574_INS [dm6]	A	ATT	7.076e^-5	0.494	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3693141	3L_3693141_SNP [dm3] 3L_3693141_SNP [dm6]	C	A	7.109e^-5	0.494	DOWNSTREAM CR43485 INTERGENIC
2L	16762821	2L_16762821_SNP [dm3] 2L_16762821_SNP [dm6]	A	C	7.113e^-5	0.494	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11397951	3L_11397951_DEL [dm3] 3L_11404851_DEL [dm6]	AA	A	7.189e^-5	0.495	UPSTREAM CR44363 INTERGENIC
3R	8941348	3R_8941348_SNP [dm3] 3R_13115626_SNP [dm6]	T	G	7.189e^-5	0.495	INTRON timeout
X	19250525	X_19250525_SNP [dm3] X_19356492_SNP [dm6]	A	T	7.217e^-5	0.495	INTRON kek5
2L	9452856	2L_9452856_DEL [dm3] 2L_9452856_DEL [dm6]	TGTGCG	T	7.284e^-5	0.495	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5717656	3L_5717656_SNP [dm3] 3L_5724556_SNP [dm6]	T	C	7.294e^-5	0.495	INTRON sif
2L	9530177	2L_9530177_SNP [dm3] 2L_9530177_SNP [dm6]	C	A	7.337e^-5	0.495	DOWNSTREAM CG31883 INTRON Oatp30B
2L	9530178	2L_9530178_SNP [dm3] 2L_9530178_SNP [dm6]	G	A	7.337e^-5	0.495	DOWNSTREAM CG31883 INTRON Oatp30B
X	5923587	X_5923587_SNP [dm3] X_6029554_SNP [dm6]	G	A	7.339e^-5	0.495	INTERGENIC
2L	16428585	2L_16428585_INS [dm3] 2L_16428585_INS [dm6]	A	TG	7.393e^-5	0.495	INTRON CG5888
X	5042913	X_5042913_SNP [dm3] X_5148880_SNP [dm6]	T	A	7.405e^-5	0.495	INTRON rg & 1 other
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	7.431e^-5	0.495	INTERGENIC
2L	8217428	2L_8217428_SNP [dm3] 2L_8217428_SNP [dm6]	A	G	7.446e^-5	0.495	NON_SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10216831	3L_10216831_SNP [dm3] 3L_10223731_SNP [dm6]	T	C	7.483e^-5	0.496	UPSTREAM scramb1 INTRON scramb1	TF binding site mE1_TFBS_HSA
3R	14169182	3R_14169182_SNP [dm3] 3R_18343460_SNP [dm6]	C	T	7.561e^-5	0.498	INTRON CG15803
X	20030848	X_20030848_DEL [dm3] X_20136815_DEL [dm6]	AACAACC	A	7.569e^-5	0.498		TF binding site mE1_TFBS_chinmo
2L	2250467	2L_2250467_SNP [dm3] 2L_2250467_SNP [dm6]	A	G	7.705e^-5	0.504	UTR_3_PRIME Ser12
3R	15045295	3R_15045295_SNP [dm3] 3R_19219573_SNP [dm6]	T	A	7.714e^-5	0.504	INTRON vib
X	6678458	X_6678458_SNP [dm3] X_6784425_SNP [dm6]	G	A	7.745e^-5	0.504	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13768026	3R_13768026_SNP [dm3] 3R_17942304_SNP [dm6]	C	A	7.794e^-5	0.504	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	6968492	3R_6968492_SNP [dm3] 3R_11142770_SNP [dm6]	T	A	7.794e^-5	0.504	INTERGENIC
3L	4853439	3L_4853439_DEL [dm3] 3L_4853439_DEL [dm6]	GGTTTAAATCA...	C	7.854e^-5	0.506	UPSTREAM CG32237 INTERGENIC
3L	3811785	3L_3811785_SNP [dm3] 3L_3811785_SNP [dm6]	G	T	7.921e^-5	0.506	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12723518	2L_12723518_SNP [dm3] 2L_12723518_SNP [dm6]	A	G	7.937e^-5	0.506	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3L	6584785	3L_6584785_SNP [dm3] 3L_6591685_SNP [dm6]	C	A	7.953e^-5	0.506	SYNONYMOUS_CODING CG18769
2R	3785959	2R_3785959_SNP [dm3] 2R_7898454_SNP [dm6]	A	G	7.958e^-5	0.506	INTRON CG30377	TF binding site mE1_TFBS_cad
3L	9483199	3L_9483199_SNP [dm3] 3L_9490099_SNP [dm6]	T	C	7.982e^-5	0.506	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
X	15415630	X_15415630_SNP [dm3] X_15521597_SNP [dm6]	T	A	8.006e^-5	0.506	INTRON Ac13E
X	9125621	X_9125621_SNP [dm3] X_9231588_SNP [dm6]	G	A	8.039e^-5	0.506	INTRON CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18109405	2L_18109405_SNP [dm3] 2L_18109405_SNP [dm6]	A	T	8.128e^-5	0.51	INTERGENIC
2L	16428590	2L_16428590_INS [dm3] 2L_16428590_INS [dm6]	C	TATGTA	8.281e^-5	0.512	INTRON CG5888
3R	66570	3R_66570_SNP [dm3] 3R_4240848_SNP [dm6]	G	T	8.302e^-5	0.512	DOWNSTREAM CG14642 INTRON Gel
X	18762178	X_18762178_SNP [dm3] X_18868145_SNP [dm6]	C	A	8.330e^-5	0.512	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8634692	3R_8634692_SNP [dm3] 3R_12808970_SNP [dm6]	T	G	8.333e^-5	0.512	INTERGENIC
2L	12723512	2L_12723512_SNP [dm3] 2L_12723512_SNP [dm6]	C	T	8.334e^-5	0.512	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	6950574	3R_6950574_SNP [dm3] 3R_11124852_SNP [dm6]	T	G	8.357e^-5	0.512	INTERGENIC
X	18762213	X_18762213_SNP [dm3] X_18868180_SNP [dm6]	T	C	8.364e^-5	0.512	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10054421	2L_10054421_SNP [dm3] 2L_10054421_SNP [dm6]	G	A	8.374e^-5	0.512	DOWNSTREAM CR44875 INTRON Cpr31A
3R	22620676	3R_22620676_SNP [dm3] 3R_26794954_SNP [dm6]	C	G	8.434e^-5	0.514	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8206661	3R_8206661_SNP [dm3] 3R_12380939_SNP [dm6]	C	T	8.542e^-5	0.516	UTR_3_PRIME CG10035 DOWNSTREAM CG10035 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	17851586	2L_17851586_SNP [dm3] 2L_17851586_SNP [dm6]	A	T	8.553e^-5	0.516	INTRON CadN2
X	5717706	X_5717706_SNP [dm3] X_5823673_SNP [dm6]	C	T	8.585e^-5	0.516	INTRON CG15765
3R	13869924	3R_13869924_SNP [dm3] 3R_18044202_SNP [dm6]	A	G	8.617e^-5	0.516	INTERGENIC
2R	8292671	2R_8292671_SNP [dm3] 2R_12405166_SNP [dm6]	C	G	8.630e^-5	0.516	UPSTREAM Cpr49Af DOWNSTREAM Cpr49Ae INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18475920	X_18475920_SNP [dm3] X_18581887_SNP [dm6]	C	G	8.640e^-5	0.516	INTERGENIC
2R	18443524	2R_18443524_SNP [dm3] 2R_22556019_SNP [dm6]	C	T	8.748e^-5	0.519	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5717707	X_5717707_SNP [dm3] X_5823674_SNP [dm6]	C	T	8.754e^-5	0.519	INTRON CG15765
2R	16487252	2R_16487252_SNP [dm3] 2R_20599747_SNP [dm6]	T	C	8.767e^-5	0.519	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10263553	3R_10263553_SNP [dm3] 3R_14437831_SNP [dm6]	C	T	8.814e^-5	0.52	INTRON cv-c
3R	13848777	3R_13848777_SNP [dm3] 3R_18023055_SNP [dm6]	T	C	8.912e^-5	0.522	UTR_3_PRIME CG7785 UPSTREAM CG7794
3R	8249866	3R_8249866_SNP [dm3] 3R_12424144_SNP [dm6]	G	A	8.915e^-5	0.522	UTR_3_PRIME Pp1-87B DOWNSTREAM CG17202	TF binding site mE1_TFBS_cad
3R	13787997	3R_13787997_SNP [dm3] 3R_17962275_SNP [dm6]	G	A	8.933e^-5	0.522	INTRON cpo
3R	6992700	3R_6992700_SNP [dm3] 3R_11166978_SNP [dm6]	C	T	9.032e^-5	0.523	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
2R	11625068	2R_11625068_SNP [dm3] 2R_15737563_SNP [dm6]	C	A	9.038e^-5	0.523	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2519138	3L_2519138_SNP [dm3] 3L_2519138_SNP [dm6]	T	C	9.038e^-5	0.523	DOWNSTREAM CR45170 INTRON Spn
3R	22938160	3R_22938160_SNP [dm3] 3R_27112438_SNP [dm6]	C	G	9.090e^-5	0.524	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	15265166	2R_15265166_SNP [dm3] 2R_19377661_SNP [dm6]	C	T	9.113e^-5	0.524	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4788729	3L_4788729_SNP [dm3] 3L_4788729_SNP [dm6]	T	C	9.135e^-5	0.524	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	10263626	3R_10263626_SNP [dm3] 3R_14437904_SNP [dm6]	A	T	9.204e^-5	0.526	INTRON cv-c
2L	9651488	2L_9651488_SNP [dm3] 2L_9651488_SNP [dm6]	T	G	9.238e^-5	0.526	SPLICE_SITE_REGION Apoltp INTRON Apoltp
X	8689086	X_8689086_INS [dm3] X_8795053_INS [dm6]	C	TG	9.262e^-5	0.526	INTRON Lim1
2L	7452015	2L_7452015_SNP [dm3] 2L_7452015_SNP [dm6]	T	G	9.357e^-5	0.527	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	12040060	2R_12040060_SNP [dm3] 2R_16152555_SNP [dm6]	T	C	9.362e^-5	0.527	INTRON lbk	transposable element FlyBase
X	12446662	X_12446662_SNP [dm3] X_12552629_SNP [dm6]	A	G	9.365e^-5	0.527	UPSTREAM Cpr11B INTRON CG43921
3L	12839316	3L_12839316_SNP [dm3] 3L_12846216_SNP [dm6]	T	G	9.417e^-5	0.527	INTRON CG10948
2R	18375116	2R_18375116_SNP [dm3] 2R_22487611_SNP [dm6]	G	A	9.458e^-5	0.527	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
X	9126161	X_9126161_SNP [dm3] X_9232128_SNP [dm6]	C	A	9.509e^-5	0.527	UTR_5_PRIME CG12121 DOWNSTREAM Ir8a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3485608	X_3485608_SNP [dm3] X_3591575_SNP [dm6]	T	A	9.512e^-5	0.527	INTRON AstA-R1
X	1507773	X_1507773_SNP [dm3] X_1613740_SNP [dm6]	G	A	9.536e^-5	0.527	UTR_5_PRIME br INTRON br & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	7574581	X_7574581_SNP [dm3] X_7680548_SNP [dm6]	G	A	9.551e^-5	0.527	UPSTREAM CR45667 & 1 other DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11626569	3L_11626569_SNP [dm3] 3L_11633469_SNP [dm6]	A	T	9.558e^-5	0.527	UPSTREAM CR45158 INTRON CG32091
3L	17046794	3L_17046794_SNP [dm3] 3L_17053694_SNP [dm6]	A	T	9.598e^-5	0.527	INTRON rogdi	TF binding site BDTNP1_TFBS_da
X	15415664	X_15415664_SNP [dm3] X_15521631_SNP [dm6]	A	T	9.673e^-5	0.527	INTRON Ac13E
2L	11333172	2L_11333172_SNP [dm3] 2L_11333172_SNP [dm6]	A	G	9.675e^-5	0.527	UPSTREAM CR44584 INTERGENIC
2R	12040039	2R_12040039_SNP [dm3] 2R_16152534_SNP [dm6]	T	C	9.680e^-5	0.527	INTRON lbk	transposable element FlyBase
2R	18165137	2R_18165137_SNP [dm3] 2R_22277632_SNP [dm6]	A	G	9.702e^-5	0.527	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5858536	3L_5858536_SNP [dm3] 3L_5865436_SNP [dm6]	G	A	9.780e^-5	0.53	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9744284	2R_9744284_SNP [dm3] 2R_13856779_SNP [dm6]	A	G	9.817e^-5	0.531	SYNONYMOUS_CODING tum DOWNSTREAM CR44367	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2106613	X_2106613_SNP [dm3] X_2212580_SNP [dm6]	A	C	9.908e^-5	0.533	UPSTREAM msta INTRON msta
X	20630567	X_20630567_SNP [dm3] X_20759540_SNP [dm6]	G	A	9.934e^-5	0.533	DOWNSTREAM CR43838 EXON CR44710
3L	9478027	3L_9478027_SNP [dm3] 3L_9484927_SNP [dm6]	T	C	9.968e^-5	0.533	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12023512	2R_12023512_SNP [dm3] 2R_16136007_SNP [dm6]	C	G	9.970e^-5	0.533	INTRON spin
3R	8499993	3R_8499993_SNP [dm3] 3R_12674271_SNP [dm6]	A	G	1.005e^-4	0.534	UPSTREAM CG6188 DOWNSTREAM CG14395 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14115857	3R_14115857_SNP [dm3] 3R_18290135_SNP [dm6]	T	G	1.008e^-4	0.534	NON_SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22938168	3R_22938168_SNP [dm3] 3R_27112446_SNP [dm6]	A	T	1.008e^-4	0.534	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	18448695	2R_18448695_SNP [dm3] 2R_22561190_SNP [dm6]	A	G	1.017e^-4	0.536	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	16468472	2L_16468472_SNP [dm3] 2L_16468472_SNP [dm6]	T	C	1.017e^-4	0.536	INTRON dac
3R	7095408	3R_7095408_SNP [dm3] 3R_11269686_SNP [dm6]	A	T	1.022e^-4	0.537	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11778100	X_11778100_SNP [dm3] X_11884067_SNP [dm6]	T	C	1.032e^-4	0.54	INTRON CG10353
2R	16678240	2R_16678240_SNP [dm3] 2R_20790735_SNP [dm6]	C	T	1.034e^-4	0.54	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3R	13803606	3R_13803606_SNP [dm3] 3R_17977884_SNP [dm6]	C	A	1.043e^-4	0.543	INTRON cpo
X	18762214	X_18762214_SNP [dm3] X_18868181_SNP [dm6]	C	T	1.046e^-4	0.544	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10045050	X_10045050_SNP [dm3] X_10151017_SNP [dm6]	G	A	1.066e^-4	0.548	INTRON CR44894
2L	11370880	2L_11370880_SNP [dm3] 2L_11370880_SNP [dm6]	G	A	1.071e^-4	0.548	INTRON salr
2R	3422147	2R_3422147_SNP [dm3] 2R_7534642_SNP [dm6]	C	T	1.076e^-4	0.548	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5717709	X_5717709_SNP [dm3] X_5823676_SNP [dm6]	T	A	1.080e^-4	0.548	INTRON CG15765
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	1.085e^-4	0.548	UTR_3_PRIME CG18208
3R	13778716	3R_13778716_SNP [dm3] 3R_17952994_SNP [dm6]	A	G	1.085e^-4	0.548	INTRON cpo	TF binding site mE1_TFBS_cad
2L	9758861	2L_9758861_SNP [dm3] 2L_9758861_SNP [dm6]	A	C	1.087e^-4	0.548	INTRON zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	10524140	2R_10524140_SNP [dm3] 2R_14636635_SNP [dm6]	C	T	1.093e^-4	0.548	INTERGENIC
2L	17483874	2L_17483874_SNP [dm3] 2L_17483874_SNP [dm6]	T	C	1.097e^-4	0.548	SYNONYMOUS_CODING CG6453 UPSTREAM CG5131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10901572	3L_10901572_SNP [dm3] 3L_10908472_SNP [dm6]	C	T	1.098e^-4	0.548	INTERGENIC
X	5061050	X_5061050_INS [dm3] X_5167017_INS [dm6]	T	TAT	1.100e^-4	0.548	INTRON rg & 1 other
3R	8140733	3R_8140733_SNP [dm3] 3R_12315011_SNP [dm6]	T	A	1.102e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sbb
2L	2249795	2L_2249795_SNP [dm3] 2L_2249795_SNP [dm6]	A	T	1.105e^-4	0.548	DOWNSTREAM Ser12 INTERGENIC
2R	8984400	2R_8984400_SNP [dm3] 2R_13096895_SNP [dm6]	A	T	1.110e^-4	0.548	INTERGENIC
3L	6495481	3L_6495481_SNP [dm3] 3L_6502381_SNP [dm6]	G	A	1.110e^-4	0.548	INTRON sfl
X	16564590	X_16564590_SNP [dm3] X_16670557_SNP [dm6]	A	C	1.113e^-4	0.548	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20630487	X_20630487_SNP [dm3] X_20759460_SNP [dm6]	T	C	1.116e^-4	0.548	DOWNSTREAM CR43838 EXON CR44710
X	5700434	X_5700434_SNP [dm3] X_5806401_SNP [dm6]	G	T	1.117e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26440434	3R_26440434_SNP [dm3] 3R_30614712_SNP [dm6]	C	T	1.117e^-4	0.548	EXON CR45571
2R	17107960	2R_17107960_SNP [dm3] 2R_21220455_SNP [dm6]	A	C	1.128e^-4	0.548	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12839957	3L_12839957_SNP [dm3] 3L_12846857_SNP [dm6]	A	T	1.129e^-4	0.548	INTRON CG10948	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	5605586	3L_5605586_SNP [dm3] 3L_5612486_SNP [dm6]	T	A	1.134e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15359358	2L_15359358_SNP [dm3] 2L_15359358_SNP [dm6]	G	A	1.134e^-4	0.548	INTERGENIC
2R	11605560	2R_11605560_SNP [dm3] 2R_15718055_SNP [dm6]	T	A	1.136e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11422633	3R_11422633_SNP [dm3] 3R_15596911_SNP [dm6]	G	A	1.137e^-4	0.548	INTERGENIC
3L	6663355	3L_6663355_SNP [dm3] 3L_6670255_SNP [dm6]	G	A	1.137e^-4	0.548	INTERGENIC
2R	16104484	2R_16104484_SNP [dm3] 2R_20216979_SNP [dm6]	G	A	1.139e^-4	0.548	INTERGENIC
3R	8692677	3R_8692677_SNP [dm3] 3R_12866955_SNP [dm6]	C	T	1.142e^-4	0.548	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	9229059	2L_9229059_SNP [dm3] 2L_9229059_SNP [dm6]	G	T	1.146e^-4	0.548	INTRON tai
3L	16231793	3L_16231793_SNP [dm3] 3L_16238693_SNP [dm6]	T	C	1.151e^-4	0.548	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad
3R	6950583	3R_6950583_SNP [dm3] 3R_11124861_SNP [dm6]	A	G	1.157e^-4	0.548	INTERGENIC
X	16413597	X_16413597_SNP [dm3] X_16519564_SNP [dm6]	G	T	1.157e^-4	0.548	INTRON para
2L	12047018	2L_12047018_SNP [dm3] 2L_12047018_SNP [dm6]	T	G	1.157e^-4	0.548	UTR_3_PRIME Plzf UPSTREAM CG6770 DOWNSTREAM CR44589
3R	8231331	3R_8231331_SNP [dm3] 3R_12405609_SNP [dm6]	C	T	1.159e^-4	0.548	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12454840	3L_12454840_SNP [dm3] 3L_12461740_SNP [dm6]	C	G	1.160e^-4	0.548	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
3R	21521121	3R_21521121_SNP [dm3] 3R_25695399_SNP [dm6]	T	A	1.161e^-4	0.548	INTERGENIC
2L	12804353	2L_12804353_SNP [dm3] 2L_12804353_SNP [dm6]	T	C	1.168e^-4	0.549	INTERGENIC
3R	13794999	3R_13794999_SNP [dm3] 3R_17969277_SNP [dm6]	T	C	1.169e^-4	0.549	INTRON cpo
2L	16726710	2L_16726710_SNP [dm3] 2L_16726710_SNP [dm6]	G	T	1.175e^-4	0.55	INTRON VhaSFD
3R	8393526	3R_8393526_SNP [dm3] 3R_12567804_SNP [dm6]	A	C	1.181e^-4	0.55	INTRON Octbeta2R
3L	12987682	3L_12987682_SNP [dm3] 3L_12994582_SNP [dm6]	A	G	1.181e^-4	0.55	UPSTREAM CG11262 INTERGENIC
3L	14333632	3L_14333632_SNP [dm3] 3L_14340532_SNP [dm6]	G	C	1.185e^-4	0.55	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17881511	3L_17881511_SNP [dm3] 3L_17888411_SNP [dm6]	C	A	1.190e^-4	0.55	INTRON CG7402
3R	5745941	3R_5745941_SNP [dm3] 3R_9920219_SNP [dm6]	C	T	1.193e^-4	0.55	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
3L	9874996	3L_9874996_SNP [dm3] 3L_9881896_SNP [dm6]	T	C	1.198e^-4	0.55	INTRON CG34382
3L	11267967	3L_11267967_SNP [dm3] 3L_11274867_SNP [dm6]	G	A	1.199e^-4	0.55	UPSTREAM CR44720 INTERGENIC
3R	16753364	3R_16753364_SNP [dm3] 3R_20927642_SNP [dm6]	G	A	1.199e^-4	0.55	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other
3L	5337678	3L_5337678_SNP [dm3] 3L_5344578_SNP [dm6]	G	A	1.203e^-4	0.55	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9874989	3L_9874989_SNP [dm3] 3L_9881889_SNP [dm6]	T	G	1.203e^-4	0.55	INTRON CG34382
3R	5352619	3R_5352619_SNP [dm3] 3R_9526897_SNP [dm6]	C	G	1.211e^-4	0.55	UTR_3_PRIME CG8176
X	2736315	X_2736315_SNP [dm3] X_2842282_SNP [dm6]	C	A	1.211e^-4	0.55	INTRON kirre
2R	6650904	2R_6650904_SNP [dm3] 2R_10763399_SNP [dm6]	G	A	1.212e^-4	0.55	INTRON CG33144
2R	6652487	2R_6652487_SNP [dm3] 2R_10764982_SNP [dm6]	C	A	1.221e^-4	0.551	INTRON CG33144
X	5700447	X_5700447_SNP [dm3] X_5806414_SNP [dm6]	A	T	1.223e^-4	0.551	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9164957	3R_9164957_SNP [dm3] 3R_13339235_SNP [dm6]	A	T	1.224e^-4	0.551	INTRON PK2-R1
2L	7149891	2L_7149891_SNP [dm3] 2L_7149891_SNP [dm6]	C	T	1.225e^-4	0.551	INTRON Pvf3
3R	8594154	3R_8594154_SNP [dm3] 3R_12768432_SNP [dm6]	T	C	1.232e^-4	0.551	UPSTREAM CR44233 DOWNSTREAM CR44232 INTRON beat-Vc
X	11778161	X_11778161_SNP [dm3] X_11884128_SNP [dm6]	A	G	1.238e^-4	0.551	INTRON CG10353
2R	3080452	2R_3080452_SNP [dm3] 2R_7192947_SNP [dm6]	G	A	1.242e^-4	0.551	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19719975	2R_19719975_SNP [dm3] 2R_23832452_SNP [dm6]	C	G	1.248e^-4	0.551	INTRON CG5549
2L	2069228	2L_2069228_DEL [dm3] 2L_2069228_DEL [dm6]	AA	A	1.250e^-4	0.551	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	4731450	2L_4731450_SNP [dm3] 2L_4731450_SNP [dm6]	A	T	1.251e^-4	0.551	DOWNSTREAM CG15631 INTERGENIC
3L	14203074	3L_14203074_SNP [dm3] 3L_14209974_SNP [dm6]	C	T	1.253e^-4	0.551	INTRON nuf
3R	8605478	3R_8605478_SNP [dm3] 3R_12779756_SNP [dm6]	A	T	1.254e^-4	0.551	INTRON beat-Vc
2L	12204671	2L_12204671_SNP [dm3] 2L_12204671_SNP [dm6]	T	C	1.256e^-4	0.551	INTRON aret
3R	13823760	3R_13823760_SNP [dm3] 3R_17998038_SNP [dm6]	C	G	1.259e^-4	0.551	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13867291	3R_13867291_SNP [dm3] 3R_18041569_SNP [dm6]	G	A	1.263e^-4	0.551	INTERGENIC
3R	13787907	3R_13787907_INS [dm3] 3R_17962185_INS [dm6]	A	ATA	1.270e^-4	0.551	INTRON cpo
X	9125828	X_9125828_SNP [dm3] X_9231795_SNP [dm6]	A	G	1.274e^-4	0.551	DOWNSTREAM Ir8a INTRON CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13145434	2R_13145434_SNP [dm3] 2R_17257929_SNP [dm6]	C	T	1.274e^-4	0.551	UPSTREAM CG43108 INTRON mbl
3R	8390369	3R_8390369_SNP [dm3] 3R_12564647_SNP [dm6]	A	T	1.278e^-4	0.551	INTRON Octbeta2R	TF binding site mE1_TFBS_run
3L	4788754	3L_4788754_SNP [dm3] 3L_4788754_SNP [dm6]	G	T	1.279e^-4	0.551	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	9125604	X_9125604_SNP [dm3] X_9231571_SNP [dm6]	A	T	1.287e^-4	0.551	INTRON CG12121	TF binding site mE1_TFBS_sens
2R	3776957	2R_3776957_DEL [dm3] 2R_7889452_DEL [dm6]	TT	T	1.288e^-4	0.551	UPSTREAM CG30377 INTERGENIC
2R	17741209	2R_17741209_SNP [dm3] 2R_21853704_SNP [dm6]	G	A	1.289e^-4	0.551	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16388243	2R_16388243_SNP [dm3] 2R_20500738_SNP [dm6]	G	T	1.290e^-4	0.551	INTERGENIC	regulatory region REDfly_CRMs
3R	6950582	3R_6950582_SNP [dm3] 3R_11124860_SNP [dm6]	A	G	1.295e^-4	0.551	INTERGENIC
2R	16564970	2R_16564970_SNP [dm3] 2R_20677465_SNP [dm6]	A	T	1.296e^-4	0.551	INTERGENIC
3R	6996613	3R_6996613_SNP [dm3] 3R_11170891_SNP [dm6]	G	A	1.299e^-4	0.551	UTR_3_PRIME Ugt35a UPSTREAM Ugt35b
3L	13392224	3L_13392224_SNP [dm3] 3L_13399124_SNP [dm6]	G	T	1.303e^-4	0.551	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15246319	X_15246319_SNP [dm3] X_15352286_SNP [dm6]	C	A	1.315e^-4	0.551	DOWNSTREAM acj6 INTRON acj6	TF binding site BDTNP1_TFBS_dl
2L	8229308	2L_8229308_SNP [dm3] 2L_8229308_SNP [dm6]	G	C	1.316e^-4	0.551	INTRON Pvr
2R	4381555	2R_4381555_SNP [dm3] 2R_8494050_SNP [dm6]	A	G	1.319e^-4	0.551	SYNONYMOUS_CODING mtt INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20630551	X_20630551_SNP [dm3] X_20759524_SNP [dm6]	C	T	1.322e^-4	0.551	DOWNSTREAM CR43838 EXON CR44710
X	7005998	X_7005998_SNP [dm3] X_7111965_SNP [dm6]	A	T	1.323e^-4	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10064261	2L_10064261_INS [dm3] 2L_10064261_INS [dm6]	T	TT	1.331e^-4	0.551	UTR_3_PRIME CG44153 DOWNSTREAM CG44153 & 1 other
3R	7064822	3R_7064822_SNP [dm3] 3R_11239100_SNP [dm6]	T	A	1.334e^-4	0.551	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9125628	X_9125628_SNP [dm3] X_9231595_SNP [dm6]	T	A	1.334e^-4	0.551	INTRON CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9452909	2L_9452909_SNP [dm3] 2L_9452909_SNP [dm6]	G	A	1.335e^-4	0.551	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17543886	3R_17543886_SNP [dm3] 3R_21718164_SNP [dm6]	G	A	1.336e^-4	0.551	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	7534919	3L_7534919_SNP [dm3] 3L_7541819_SNP [dm6]	T	A	1.337e^-4	0.551	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi
X	8390324	X_8390324_SNP [dm3] X_8496291_SNP [dm6]	C	T	1.339e^-4	0.551	INTRON CG33181
2L	779494	2L_779494_SNP [dm3] 2L_779494_SNP [dm6]	C	T	1.345e^-4	0.551	SYNONYMOUS_CODING CG13947 UPSTREAM Gr21a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9232856	2L_9232856_SNP [dm3] 2L_9232856_SNP [dm6]	G	C	1.346e^-4	0.551	INTRON tai
3L	13355584	3L_13355584_SNP [dm3] 3L_13362484_SNP [dm6]	A	C	1.350e^-4	0.551	INTERGENIC
2L	9764254	2L_9764254_SNP [dm3] 2L_9764254_SNP [dm6]	G	C	1.354e^-4	0.551	SYNONYMOUS_CODING und UPSTREAM Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3412691	3L_3412691_SNP [dm3] 3L_3412691_SNP [dm6]	G	A	1.354e^-4	0.551	UPSTREAM mir-2282 INTRON sty
3R	8121144	3R_8121144_SNP [dm3] 3R_12295422_SNP [dm6]	C	A	1.356e^-4	0.551	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad
2R	3414146	2R_3414146_SNP [dm3] 2R_7526641_SNP [dm6]	A	G	1.357e^-4	0.551	UTR_3_PRIME Drat UPSTREAM Orc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	17854745	2L_17854745_SNP [dm3] 2L_17854745_SNP [dm6]	C	T	1.359e^-4	0.551	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11626541	3L_11626541_SNP [dm3] 3L_11633441_SNP [dm6]	G	A	1.363e^-4	0.551	UPSTREAM CR45158 INTRON CG32091
2L	10560067	2L_10560067_INS [dm3] 2L_10560067_INS [dm6]	A	GT	1.365e^-4	0.551	INTRON Trim9
3L	20701059	3L_20701059_SNP [dm3] 3L_20707959_SNP [dm6]	G	A	1.368e^-4	0.551	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	20030860	X_20030860_SNP [dm3] X_20136827_SNP [dm6]	T	C	1.368e^-4	0.551	NON_SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
X	18762310	X_18762310_SNP [dm3] X_18868277_SNP [dm6]	A	G	1.369e^-4	0.551	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8515609	3R_8515609_SNP [dm3] 3R_12689887_SNP [dm6]	T	C	1.374e^-4	0.552	UTR_3_PRIME Su_fu_ UPSTREAM kar	TF binding site mE1_TFBS_chinmo
3R	8172091	3R_8172091_SNP [dm3] 3R_12346369_SNP [dm6]	C	T	1.377e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	18762236	X_18762236_SNP [dm3] X_18868203_SNP [dm6]	C	T	1.380e^-4	0.552	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15624987	3L_15624987_SNP [dm3] 3L_15631887_SNP [dm6]	C	G	1.389e^-4	0.553	INTRON comm3
X	15125193	X_15125193_SNP [dm3] X_15231160_SNP [dm6]	C	A	1.400e^-4	0.553	INTERGENIC
3L	4788804	3L_4788804_SNP [dm3] 3L_4788804_SNP [dm6]	T	C	1.404e^-4	0.553	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	9463159	3L_9463159_SNP [dm3] 3L_9470059_SNP [dm6]	T	A	1.404e^-4	0.553	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6317169	2L_6317169_SNP [dm3] 2L_6317169_SNP [dm6]	A	G	1.407e^-4	0.553	INTRON Ddr
3R	8947446	3R_8947446_SNP [dm3] 3R_13121724_SNP [dm6]	T	G	1.409e^-4	0.553	DOWNSTREAM 2mit INTRON timeout
3L	6821495	3L_6821495_SNP [dm3] 3L_6828395_SNP [dm6]	T	C	1.413e^-4	0.553	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8421908	3R_8421908_SNP [dm3] 3R_12596186_SNP [dm6]	G	A	1.419e^-4	0.553	UPSTREAM Octbeta2R INTERGENIC	TF binding site BDTNP1_TFBS_z
X	5249669	X_5249669_SNP [dm3] X_5355636_SNP [dm6]	A	G	1.425e^-4	0.553	INTRON SK
3L	13351847	3L_13351847_SNP [dm3] 3L_13358747_SNP [dm6]	C	T	1.426e^-4	0.553	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18386849	X_18386849_SNP [dm3] X_18492816_SNP [dm6]	G	A	1.429e^-4	0.553	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
X	9121963	X_9121963_SNP [dm3] X_9227930_SNP [dm6]	T	C	1.429e^-4	0.553	SYNONYMOUS_CODING Gr8a DOWNSTREAM CG12121	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9462385	3L_9462385_SNP [dm3] 3L_9469285_SNP [dm6]	T	C	1.431e^-4	0.553	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
3R	8486907	3R_8486907_SNP [dm3] 3R_12661185_SNP [dm6]	G	T	1.432e^-4	0.553	DOWNSTREAM CR45586 & 1 other INTERGENIC
3R	8520999	3R_8520999_SNP [dm3] 3R_12695277_SNP [dm6]	A	G	1.432e^-4	0.553	UTR_5_PRIME NijC UPSTREAM CG14391 & 1 other
3L	14470998	3L_14470998_SNP [dm3] 3L_14477898_SNP [dm6]	C	A	1.436e^-4	0.553	INTRON bbg	TF binding site mE1_TFBS_Trl
2R	11580064	2R_11580064_SNP [dm3] 2R_15692559_SNP [dm6]	A	C	1.440e^-4	0.553	NON_SYNONYMOUS_CODING CG30087 DOWNSTREAM CG30088 EXON CR44372
2R	12040004	2R_12040004_SNP [dm3] 2R_16152499_SNP [dm6]	G	A	1.441e^-4	0.553	INTRON lbk	transposable element FlyBase
2R	12040012	2R_12040012_INS [dm3] 2R_16152507_INS [dm6]	T	TT	1.441e^-4	0.553	INTRON lbk	transposable element FlyBase
2L	12302157	2L_12302157_SNP [dm3] 2L_12302157_SNP [dm6]	G	A	1.446e^-4	0.553	INTRON aret
3R	3488294	3R_3488294_SNP [dm3] 3R_7662572_SNP [dm6]	G	C	1.448e^-4	0.553	UTR_5_PRIME Nlg1
3L	17688370	3L_17688370_SNP [dm3] 3L_17695270_SNP [dm6]	T	A	1.453e^-4	0.553	INTRON Ccn
2R	9823903	2R_9823903_SNP [dm3] 2R_13936398_SNP [dm6]	G	A	1.453e^-4	0.553	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	20224506	2R_20224506_INS [dm3] 2R_24336983_INS [dm6]	A	ATA	1.459e^-4	0.553	INTERGENIC
X	5150018	X_5150018_SNP [dm3] X_5255985_SNP [dm6]	G	A	1.462e^-4	0.553	INTERGENIC
2R	19392902	2R_19392902_SNP [dm3] 2R_23505379_SNP [dm6]	A	G	1.463e^-4	0.553	INTERGENIC
2L	7432464	2L_7432464_SNP [dm3] 2L_7432464_SNP [dm6]	G	A	1.463e^-4	0.553	INTRON CG5958
X	18931742	X_18931742_SNP [dm3] X_19037709_SNP [dm6]	C	T	1.468e^-4	0.553	INTERGENIC
2L	9763661	2L_9763661_SNP [dm3] 2L_9763661_SNP [dm6]	G	C	1.471e^-4	0.553	SYNONYMOUS_CODING und UPSTREAM Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6879881	3R_6879881_SNP [dm3] 3R_11054159_SNP [dm6]	G	C	1.472e^-4	0.553	INTERGENIC
3R	8525744	3R_8525744_SNP [dm3] 3R_12700022_SNP [dm6]	C	T	1.474e^-4	0.553	INTRON Past1
X	13818936	X_13818936_SNP [dm3] X_13924903_SNP [dm6]	T	C	1.477e^-4	0.553	INTRON mamo
X	16742514	X_16742514_SNP [dm3] X_16848481_SNP [dm6]	T	C	1.479e^-4	0.553	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_chinmo
3L	13377120	3L_13377120_DEL [dm3] 3L_13384020_DEL [dm6]	TT	T	1.485e^-4	0.554	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	9141209	2L_9141209_SNP [dm3] 2L_9141209_SNP [dm6]	A	T	1.491e^-4	0.555	INTRON CG32982
X	8865536	X_8865536_SNP [dm3] X_8971503_SNP [dm6]	T	A	1.494e^-4	0.555	INTRON rdgA
2L	9139475	2L_9139475_SNP [dm3] 2L_9139475_SNP [dm6]	G	C	1.498e^-4	0.555	INTRON CG32982
3L	17879643	3L_17879643_SNP [dm3] 3L_17886543_SNP [dm6]	C	T	1.504e^-4	0.555	SYNONYMOUS_CODING CG16775	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6107044	X_6107044_SNP [dm3] X_6213011_SNP [dm6]	G	C	1.506e^-4	0.555	INTERGENIC
2R	16443576	2R_16443576_SNP [dm3] 2R_20556071_SNP [dm6]	T	C	1.507e^-4	0.555	UPSTREAM lms INTERGENIC
3R	14169212	3R_14169212_SNP [dm3] 3R_18343490_SNP [dm6]	T	A	1.510e^-4	0.555	INTRON CG15803
3R	13892285	3R_13892285_SNP [dm3] 3R_18066563_SNP [dm6]	A	T	1.512e^-4	0.555	INTERGENIC
3R	8510998	3R_8510998_SNP [dm3] 3R_12685276_SNP [dm6]	C	G	1.514e^-4	0.555	INTRON kar
3R	12727771	3R_12727771_INS [dm3] 3R_16902049_INS [dm6]	C	CAC	1.522e^-4	0.557	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16353394	2R_16353394_SNP [dm3] 2R_20465889_SNP [dm6]	T	C	1.525e^-4	0.557	INTRON CG12484
3R	10782231	3R_10782231_SNP [dm3] 3R_14956509_SNP [dm6]	C	G	1.535e^-4	0.559	INTERGENIC
2L	2613685	2L_2613685_SNP [dm3] 2L_2613685_SNP [dm6]	G	A	1.538e^-4	0.559	INTERGENIC
2R	16124953	2R_16124953_SNP [dm3] 2R_20237448_SNP [dm6]	C	T	1.558e^-4	0.56	INTRON CG11099
2L	2249799	2L_2249799_SNP [dm3] 2L_2249799_SNP [dm6]	G	A	1.561e^-4	0.56	DOWNSTREAM Ser12 INTERGENIC
2L	18988488	2L_18988488_SNP [dm3] 2L_18988488_SNP [dm6]	A	G	1.563e^-4	0.56	NON_SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_sens
3L	6166445	3L_6166445_SNP [dm3] 3L_6173345_SNP [dm6]	C	A	1.564e^-4	0.56	UPSTREAM CG7376 INTRON CG10289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20474687	X_20474687_SNP [dm3] X_20603660_SNP [dm6]	G	A	1.564e^-4	0.56	INTRON RunxA
2R	13140695	2R_13140695_SNP [dm3] 2R_17253190_SNP [dm6]	T	A	1.572e^-4	0.56	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
3R	13815717	3R_13815717_SNP [dm3] 3R_17989995_SNP [dm6]	A	T	1.573e^-4	0.56	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5151546	X_5151546_SNP [dm3] X_5257513_SNP [dm6]	C	A	1.577e^-4	0.56	INTERGENIC
X	9125203	X_9125203_SNP [dm3] X_9231170_SNP [dm6]	T	G	1.578e^-4	0.56	NON_SYNONYMOUS_CODING CG12121	TF binding site mE1_TFBS_sens
3L	12479244	3L_12479244_SNP [dm3] 3L_12486144_SNP [dm6]	A	T	1.581e^-4	0.56	DOWNSTREAM CG10660 INTRON CG33725	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15278080	3R_15278080_SNP [dm3] 3R_19452358_SNP [dm6]	A	T	1.606e^-4	0.56	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	19067091	2L_19067091_SNP [dm3] 2L_19067091_SNP [dm6]	T	G	1.607e^-4	0.56	SYNONYMOUS_CODING CG10702 INTRON CG17343	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5070418	2R_5070418_SNP [dm3] 2R_9182913_SNP [dm6]	C	G	1.612e^-4	0.56	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_bab1
2L	18416784	2L_18416784_SNP [dm3] 2L_18416784_SNP [dm6]	G	C	1.613e^-4	0.56	INTERGENIC
3R	26531821	3R_26531821_SNP [dm3] 3R_30706099_SNP [dm6]	T	A	1.614e^-4	0.56	UTR_5_PRIME CG31010	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	4636520	3L_4636520_SNP [dm3] 3L_4636520_SNP [dm6]	A	T	1.618e^-4	0.56	DOWNSTREAM axo INTRON axo
2R	10422221	2R_10422221_SNP [dm3] 2R_14534716_SNP [dm6]	T	A	1.625e^-4	0.56	INTRON ttv
3L	11142839	3L_11142839_SNP [dm3] 3L_11149739_SNP [dm6]	T	C	1.629e^-4	0.56	UTR_3_PRIME CG6216 INTRON CG32082
3R	8619797	3R_8619797_SNP [dm3] 3R_12794075_SNP [dm6]	G	A	1.632e^-4	0.56	INTERGENIC
2L	8217957	2L_8217957_SNP [dm3] 2L_8217957_SNP [dm6]	A	T	1.632e^-4	0.56	UTR_5_PRIME CG8292 DOWNSTREAM Snx6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10900928	3L_10900928_DEL [dm3] 3L_10907828_DEL [dm6]	CTCGTGGGAAGTTGCTAC...	T	1.634e^-4	0.56	INTERGENIC
X	4234532	X_4234532_INS [dm3] X_4340499_INS [dm6]	T	TT	1.635e^-4	0.56	INTRON norpA
2R	3198005	2R_3198005_SNP [dm3] 2R_7310500_SNP [dm6]	C	T	1.636e^-4	0.56	UPSTREAM CG12164 INTERGENIC
2L	8220914	2L_8220914_INS [dm3] 2L_8220914_INS [dm6]	TGGTTG	ATATATTATTATATA...	1.644e^-4	0.56	UPSTREAM Snx6 DOWNSTREAM Pvr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	9133471	3L_9133471_SNP [dm3] 3L_9140371_SNP [dm6]	G	A	1.644e^-4	0.56	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12040002	2R_12040002_SNP [dm3] 2R_16152497_SNP [dm6]	T	C	1.645e^-4	0.56	INTRON lbk	transposable element FlyBase
3L	6758493	3L_6758493_SNP [dm3] 3L_6765393_SNP [dm6]	G	T	1.645e^-4	0.56	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10054537	2L_10054537_SNP [dm3] 2L_10054537_SNP [dm6]	C	A	1.659e^-4	0.56	DOWNSTREAM CR44875 INTRON Cpr31A	TF binding site mE1_TFBS_jumu
3R	22429515	3R_22429515_SNP [dm3] 3R_26603793_SNP [dm6]	T	A	1.663e^-4	0.56	UTR_3_PRIME scrib
3L	10270665	3L_10270665_SNP [dm3] 3L_10277565_SNP [dm6]	T	A	1.666e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15511720	3R_15511720_SNP [dm3] 3R_19685998_SNP [dm6]	G	T	1.672e^-4	0.56	UPSTREAM Naam INTRON Naam
3L	12434707	3L_12434707_SNP [dm3] 3L_12441607_SNP [dm6]	G	A	1.676e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3565300	3L_3565300_DEL [dm3] 3L_3565300_DEL [dm6]	TCTT	T	1.676e^-4	0.56	INTRON Eip63E
X	6794966	X_6794966_DEL [dm3] X_6900933_DEL [dm6]	TGCTCTGTGGACTACTTTTA...	T	1.683e^-4	0.56	INTERGENIC
2R	11245346	2R_11245346_SNP [dm3] 2R_15357841_SNP [dm6]	T	G	1.684e^-4	0.56	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	26173276	3R_26173276_SNP [dm3] 3R_30347554_SNP [dm6]	G	C	1.686e^-4	0.56	INTRON hdc
3R	9764249	3R_9764249_SNP [dm3] 3R_13938527_SNP [dm6]	A	G	1.686e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	16435527	X_16435527_SNP [dm3] X_16541494_SNP [dm6]	T	C	1.687e^-4	0.56	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
X	11778147	X_11778147_SNP [dm3] X_11884114_SNP [dm6]	G	C	1.688e^-4	0.56	INTRON CG10353
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	1.691e^-4	0.56	UTR_3_PRIME CG18208
3L	4981781	3L_4981781_SNP [dm3] 3L_4981781_SNP [dm6]	T	C	1.692e^-4	0.56	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15942128	2L_15942128_SNP [dm3] 2L_15942128_SNP [dm6]	G	A	1.693e^-4	0.56	SYNONYMOUS_CODING CG12448 INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
3R	8421913	3R_8421913_SNP [dm3] 3R_12596191_SNP [dm6]	G	A	1.695e^-4	0.56	UPSTREAM Octbeta2R INTERGENIC	TF binding site BDTNP1_TFBS_z
X	17875070	X_17875070_SNP [dm3] X_17981037_SNP [dm6]	T	G	1.695e^-4	0.56	INTRON Sh
3L	9455090	3L_9455090_SNP [dm3] 3L_9461990_SNP [dm6]	C	A	1.706e^-4	0.56	UTR_5_PRIME CG44838 UPSTREAM CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	18138052	2L_18138052_SNP [dm3] 2L_18138052_SNP [dm6]	G	A	1.707e^-4	0.56	START_GAINED kel UTR_5_PRIME kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6780615	3L_6780615_SNP [dm3] 3L_6787515_SNP [dm6]	T	C	1.713e^-4	0.56	UPSTREAM CR45759 INTERGENIC
2R	16103149	2R_16103149_SNP [dm3] 2R_20215644_SNP [dm6]	A	T	1.715e^-4	0.56	INTERGENIC
2R	12039992	2R_12039992_SNP [dm3] 2R_16152487_SNP [dm6]	A	G	1.715e^-4	0.56	INTRON lbk	transposable element FlyBase
3L	11142834	3L_11142834_SNP [dm3] 3L_11149734_SNP [dm6]	G	C	1.716e^-4	0.56	UTR_3_PRIME CG6216 INTRON CG32082
2R	19388212	2R_19388212_SNP [dm3] 2R_23500689_SNP [dm6]	C	A	1.717e^-4	0.56	UTR_3_PRIME CG13558	TF binding site mE1_TFBS_HSA
3R	8433405	3R_8433405_SNP [dm3] 3R_12607683_SNP [dm6]	A	G	1.718e^-4	0.56	INTERGENIC
X	13837714	X_13837714_SNP [dm3] X_13943681_SNP [dm6]	T	C	1.722e^-4	0.56	INTRON mamo
2L	12994612	2L_12994612_SNP [dm3] 2L_12994612_SNP [dm6]	G	T	1.732e^-4	0.56	INTRON CG12404
2L	10274324	2L_10274324_SNP [dm3] 2L_10274324_SNP [dm6]	G	A	1.732e^-4	0.56	SYNONYMOUS_CODING Utx
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	1.733e^-4	0.56	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8146168	3R_8146168_SNP [dm3] 3R_12320446_SNP [dm6]	T	A	1.734e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	3823677	X_3823677_SNP [dm3] X_3929644_SNP [dm6]	G	A	1.736e^-4	0.56	UTR_5_PRIME CG42541
3L	13403344	3L_13403344_SNP [dm3] 3L_13410244_SNP [dm6]	T	A	1.739e^-4	0.56	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13266979	3R_13266979_SNP [dm3] 3R_17441257_SNP [dm6]	T	C	1.747e^-4	0.56	UPSTREAM CG14331 INTRON CG5873
3L	14390221	3L_14390221_SNP [dm3] 3L_14397121_SNP [dm6]	G	A	1.747e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9140682	2L_9140682_SNP [dm3] 2L_9140682_SNP [dm6]	G	A	1.751e^-4	0.56	INTRON CG32982
3L	5132446	3L_5132446_SNP [dm3] 3L_5139346_SNP [dm6]	T	C	1.754e^-4	0.56	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15505151	X_15505151_SNP [dm3] X_15611118_SNP [dm6]	A	G	1.765e^-4	0.56	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19203815	X_19203815_DEL [dm3] X_19309782_DEL [dm6]	GG	G	1.766e^-4	0.56	DOWNSTREAM out INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17863037	2L_17863037_SNP [dm3] 2L_17863037_SNP [dm6]	C	T	1.774e^-4	0.56	INTRON CadN2
2R	19392898	2R_19392898_SNP [dm3] 2R_23505375_SNP [dm6]	C	G	1.774e^-4	0.56	INTERGENIC
3L	4390054	3L_4390054_SNP [dm3] 3L_4390054_SNP [dm6]	T	A	1.774e^-4	0.56	INTRON slow
3L	13388122	3L_13388122_SNP [dm3] 3L_13395022_SNP [dm6]	A	G	1.778e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	3426314	2R_3426314_SNP [dm3] 2R_7538809_SNP [dm6]	C	A	1.782e^-4	0.56	NON_SYNONYMOUS_CODING CG1598 DOWNSTREAM CG2137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18782375	2R_18782375_SNP [dm3] 2R_22894852_SNP [dm6]	C	T	1.788e^-4	0.56	NON_SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad
2R	4421074	2R_4421074_SNP [dm3] 2R_8533569_SNP [dm6]	G	A	1.792e^-4	0.56	INTERGENIC
3L	5589573	3L_5589573_SNP [dm3] 3L_5596473_SNP [dm6]	T	A	1.794e^-4	0.56	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11153475	3L_11153475_SNP [dm3] 3L_11160375_SNP [dm6]	T	G	1.796e^-4	0.56	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13529846	2L_13529846_SNP [dm3] 2L_13529846_SNP [dm6]	C	A	1.803e^-4	0.56	UPSTREAM CG33642 DOWNSTREAM CG33641 INTRON B4
2R	18792290	2R_18792290_SNP [dm3] 2R_22904767_SNP [dm6]	C	T	1.805e^-4	0.56	INTRON nahoda
3R	9176243	3R_9176243_DEL [dm3] 3R_13350521_DEL [dm6]	TCTT	T	1.808e^-4	0.56	INTERGENIC
3L	11621483	3L_11621483_DEL [dm3] 3L_11628383_DEL [dm6]	AGTCGCCGAA	A	1.813e^-4	0.56	UTR_5_PRIME CG18815 DOWNSTREAM PCID2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7930478	3L_7930478_SNP [dm3] 3L_7937378_SNP [dm6]	A	C	1.814e^-4	0.56	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8678453	3R_8678453_SNP [dm3] 3R_12852731_SNP [dm6]	G	C	1.820e^-4	0.56	INTERGENIC
3R	6312042	3R_6312042_SNP [dm3] 3R_10486320_SNP [dm6]	C	G	1.829e^-4	0.56	INTERGENIC
3L	23681570	3L_23681570_SNP [dm3] 3L_23688470_SNP [dm6]	T	G	1.834e^-4	0.56	INTRON AGO3
2R	11275192	2R_11275192_SNP [dm3] 2R_15387687_SNP [dm6]	T	A	1.839e^-4	0.56	UTR_3_PRIME SRPK
2R	11275194	2R_11275194_SNP [dm3] 2R_15387689_SNP [dm6]	A	G	1.839e^-4	0.56	UTR_3_PRIME SRPK
2R	11275195	2R_11275195_SNP [dm3] 2R_15387690_SNP [dm6]	A	T	1.839e^-4	0.56	UTR_3_PRIME SRPK
3R	919251	3R_919251_SNP [dm3] 3R_5093529_SNP [dm6]	A	C	1.841e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	1.842e^-4	0.56	INTRON bol
3R	13775303	3R_13775303_SNP [dm3] 3R_17949581_SNP [dm6]	G	A	1.842e^-4	0.56	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3382837	2L_3382837_SNP [dm3] 2L_3382837_SNP [dm6]	A	T	1.844e^-4	0.56	INTERGENIC
3L	13315002	3L_13315002_SNP [dm3] 3L_13321902_SNP [dm6]	A	C	1.844e^-4	0.56	INTERGENIC
2R	16353418	2R_16353418_SNP [dm3] 2R_20465913_SNP [dm6]	A	T	1.845e^-4	0.56	INTRON CG12484
2R	11006728	2R_11006728_SNP [dm3] 2R_15119223_SNP [dm6]	G	A	1.849e^-4	0.56	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13886537	3R_13886537_SNP [dm3] 3R_18060815_SNP [dm6]	G	C	1.851e^-4	0.56	INTERGENIC
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	1.854e^-4	0.56	UTR_3_PRIME CG18208
2L	12384172	2L_12384172_SNP [dm3] 2L_12384172_SNP [dm6]	C	A	1.861e^-4	0.56	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8680154	3R_8680154_SNP [dm3] 3R_12854432_SNP [dm6]	T	C	1.863e^-4	0.56	INTERGENIC
2L	11632901	2L_11632901_SNP [dm3] 2L_11632901_SNP [dm6]	A	G	1.864e^-4	0.56	INTERGENIC
2L	12049501	2L_12049501_SNP [dm3] 2L_12049501_SNP [dm6]	G	A	1.866e^-4	0.56	UTR_5_PRIME CG14945 UPSTREAM CG14945 & 1 other
3R	11300110	3R_11300110_SNP [dm3] 3R_15474388_SNP [dm6]	C	T	1.869e^-4	0.56	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2575542	X_2575542_SNP [dm3] X_2681509_SNP [dm6]	A	G	1.871e^-4	0.56	SYNONYMOUS_CODING HLH3B DOWNSTREAM CG2652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13145453	2R_13145453_SNP [dm3] 2R_17257948_SNP [dm6]	G	T	1.873e^-4	0.56	UPSTREAM CG43108 INTRON mbl
3L	9113436	3L_9113436_SNP [dm3] 3L_9120336_SNP [dm6]	T	G	1.874e^-4	0.56	INTRON bol
X	14923651	X_14923651_SNP [dm3] X_15029618_SNP [dm6]	A	T	1.876e^-4	0.56	INTRON hiw & 1 other
2R	17807584	2R_17807584_SNP [dm3] 2R_21920079_SNP [dm6]	C	T	1.878e^-4	0.56	INTRON Fili
2R	5089234	2R_5089234_SNP [dm3] 2R_9201729_SNP [dm6]	C	A	1.879e^-4	0.56	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3R	8941641	3R_8941641_SNP [dm3] 3R_13115919_SNP [dm6]	C	T	1.881e^-4	0.56	INTRON timeout
2R	13638485	2R_13638485_SNP [dm3] 2R_17750980_SNP [dm6]	G	A	1.882e^-4	0.56	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG10931	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13266790	3R_13266790_SNP [dm3] 3R_17441068_SNP [dm6]	A	G	1.884e^-4	0.56	UPSTREAM CG14331 INTRON CG5873
3R	9956552	3R_9956552_SNP [dm3] 3R_14130830_SNP [dm6]	C	T	1.886e^-4	0.56	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	11147724	3L_11147724_SNP [dm3] 3L_11154624_SNP [dm6]	G	A	1.891e^-4	0.56	INTRON CG32082
3L	6497592	3L_6497592_SNP [dm3] 3L_6504492_SNP [dm6]	T	C	1.894e^-4	0.56	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10846657	3L_10846657_SNP [dm3] 3L_10853557_SNP [dm6]	G	A	1.896e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5883395	3L_5883395_SNP [dm3] 3L_5890295_SNP [dm6]	G	A	1.907e^-4	0.56	INTERGENIC
3L	13388130	3L_13388130_SNP [dm3] 3L_13395030_SNP [dm6]	A	T	1.916e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13388131	3L_13388131_SNP [dm3] 3L_13395031_SNP [dm6]	C	T	1.916e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13388158	3L_13388158_INS [dm3] 3L_13395058_INS [dm6]	C	GATTCCT	1.916e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	7216419	2L_7216419_SNP [dm3] 2L_7216419_SNP [dm6]	A	C	1.918e^-4	0.56	INTRON CG13784
3R	23274127	3R_23274127_DEL [dm3] 3R_27448405_DEL [dm6]	AAA	A	1.923e^-4	0.56	INTERGENIC
3R	8771753	3R_8771753_SNP [dm3] 3R_12946031_SNP [dm6]	G	C	1.925e^-4	0.56	INTERGENIC
3L	15869922	3L_15869922_SNP [dm3] 3L_15876822_SNP [dm6]	A	T	1.928e^-4	0.56	UPSTREAM CR44051 INTRON pHCl
3R	12630412	3R_12630412_SNP [dm3] 3R_16804690_SNP [dm6]	A	T	1.929e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10105335	2L_10105335_DEL [dm3] 2L_10105335_DEL [dm6]	CTTTTGCAAAAATGTTTAAC...	C	1.932e^-4	0.56	INTRON CG44153 & 1 other
2L	14451004	2L_14451004_DEL [dm3] 2L_14451004_DEL [dm6]	TTATGGTTATTCTTGTT...	T	1.936e^-4	0.56	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18686714	3R_18686714_SNP [dm3] 3R_22860992_SNP [dm6]	C	T	1.937e^-4	0.56	INTERGENIC
3R	14125664	3R_14125664_SNP [dm3] 3R_18299942_SNP [dm6]	C	T	1.941e^-4	0.56	UTR_3_PRIME Dlc90F DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	13388149	3L_13388149_SNP [dm3] 3L_13395049_SNP [dm6]	C	G	1.943e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	15370468	3R_15370468_SNP [dm3] 3R_19544746_SNP [dm6]	G	A	1.944e^-4	0.56	INTRON Dys
3L	14389095	3L_14389095_SNP [dm3] 3L_14395995_SNP [dm6]	G	A	1.946e^-4	0.56	INTERGENIC
3L	11238194	3L_11238194_SNP [dm3] 3L_11245094_SNP [dm6]	A	T	1.948e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	1.951e^-4	0.56	INTERGENIC
3R	14154028	3R_14154028_SNP [dm3] 3R_18328306_SNP [dm6]	G	T	1.959e^-4	0.56	INTRON CG31235
2R	16103641	2R_16103641_SNP [dm3] 2R_20216136_SNP [dm6]	C	A	1.968e^-4	0.56	INTERGENIC
3R	15557776	3R_15557776_SNP [dm3] 3R_19732054_SNP [dm6]	C	T	1.969e^-4	0.56	INTRON GluClalpha
3R	6270867	3R_6270867_SNP [dm3] 3R_10445145_SNP [dm6]	A	T	1.972e^-4	0.56	INTERGENIC
2R	8846905	2R_8846905_SNP [dm3] 2R_12959400_SNP [dm6]	T	C	1.975e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	836559	3L_836559_SNP [dm3] 3L_836559_SNP [dm6]	G	A	1.976e^-4	0.56	UTR_3_PRIME CG42554 DOWNSTREAM CG13901	TF binding site BDTNP1_TFBS_dl
X	9122048	X_9122048_SNP [dm3] X_9228015_SNP [dm6]	A	C	1.977e^-4	0.56	NON_SYNONYMOUS_CODING Gr8a DOWNSTREAM CG12121	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8846748	2R_8846748_SNP [dm3] 2R_12959243_SNP [dm6]	C	A	1.978e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9874866	3L_9874866_DEL [dm3] 3L_9881766_DEL [dm6]	TATAATT	T	1.979e^-4	0.56	INTRON CG34382
3R	16018597	3R_16018597_SNP [dm3] 3R_20192875_SNP [dm6]	A	G	1.980e^-4	0.56	INTERGENIC
2R	8853561	2R_8853561_SNP [dm3] 2R_12966056_SNP [dm6]	A	C	1.981e^-4	0.56	UTR_3_PRIME Psc DOWNSTREAM Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9463947	3L_9463947_SNP [dm3] 3L_9470847_SNP [dm6]	G	A	1.992e^-4	0.56	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
2R	3404527	2R_3404527_SNP [dm3] 2R_7517022_SNP [dm6]	C	T	1.999e^-4	0.56	NON_SYNONYMOUS_CODING CG1602 UPSTREAM CG1603	TF binding site mE1_TFBS_cad
3R	6955012	3R_6955012_SNP [dm3] 3R_11129290_SNP [dm6]	C	A	2.001e^-4	0.56	UPSTREAM Ugt86Dd INTERGENIC
2L	5887284	2L_5887284_SNP [dm3] 2L_5887284_SNP [dm6]	T	G	2.005e^-4	0.56	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3L	17595331	3L_17595331_SNP [dm3] 3L_17602231_SNP [dm6]	G	A	2.005e^-4	0.56	INTRON Eip74EF
3R	22265905	3R_22265905_SNP [dm3] 3R_26440183_SNP [dm6]	G	C	2.008e^-4	0.56	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11253837	2L_11253837_SNP [dm3] 2L_11253837_SNP [dm6]	G	T	2.015e^-4	0.56	INTRON ab
3L	11453320	3L_11453320_SNP [dm3] 3L_11460220_SNP [dm6]	C	T	2.022e^-4	0.56	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
2R	3426319	2R_3426319_SNP [dm3] 2R_7538814_SNP [dm6]	C	T	2.028e^-4	0.56	NON_SYNONYMOUS_CODING CG1598 DOWNSTREAM CG2137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14807945	2R_14807945_DEL [dm3] 2R_18920440_DEL [dm6]	AA	A	2.032e^-4	0.56	INTRON sano
3L	5717633	3L_5717633_SNP [dm3] 3L_5724533_SNP [dm6]	A	G	2.036e^-4	0.56	INTRON sif
3R	16029360	3R_16029360_SNP [dm3] 3R_20203638_SNP [dm6]	G	A	2.037e^-4	0.56	INTERGENIC
3L	11451442	3L_11451442_SNP [dm3] 3L_11458342_SNP [dm6]	T	C	2.038e^-4	0.56	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
X	18218900	X_18218900_SNP [dm3] X_18324867_SNP [dm6]	C	G	2.041e^-4	0.56	UTR_3_PRIME CG6123
3L	5066000	3L_5066000_SNP [dm3] 3L_5066000_SNP [dm6]	T	C	2.041e^-4	0.56	INTRON Con
3L	2885049	3L_2885049_SNP [dm3] 3L_2885049_SNP [dm6]	A	G	2.041e^-4	0.56	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17875038	X_17875038_MNP [dm3] X_17981005_MNP [dm6]	AGG	TAT	2.043e^-4	0.56	INTRON Sh
2L	4058659	2L_4058659_SNP [dm3] 2L_4058659_SNP [dm6]	G	T	2.044e^-4	0.56	INTRON ed
3R	8867428	3R_8867428_SNP [dm3] 3R_13041706_SNP [dm6]	A	T	2.045e^-4	0.56	UTR_5_PRIME snk UPSTREAM CG11670
3R	8528911	3R_8528911_SNP [dm3] 3R_12703189_SNP [dm6]	C	T	2.046e^-4	0.56	INTRON Past1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9360900	3R_9360900_SNP [dm3] 3R_13535178_SNP [dm6]	C	T	2.048e^-4	0.56	INTERGENIC
X	20630494	X_20630494_SNP [dm3] X_20759467_SNP [dm6]	C	T	2.060e^-4	0.56	DOWNSTREAM CR43838 EXON CR44710
2R	8846089	2R_8846089_SNP [dm3] 2R_12958584_SNP [dm6]	A	C	2.061e^-4	0.56	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11691000	3L_11691000_SNP [dm3] 3L_11697900_SNP [dm6]	G	A	2.067e^-4	0.56	UPSTREAM CG11652 INTRON CG6053
3L	9463178	3L_9463178_SNP [dm3] 3L_9470078_SNP [dm6]	G	A	2.071e^-4	0.56	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6494430	3L_6494430_SNP [dm3] 3L_6501330_SNP [dm6]	G	A	2.074e^-4	0.56	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8231319	3R_8231319_SNP [dm3] 3R_12405597_SNP [dm6]	A	C	2.075e^-4	0.56	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11451297	3L_11451297_SNP [dm3] 3L_11458197_SNP [dm6]	G	A	2.076e^-4	0.56	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3L	11691003	3L_11691003_DEL [dm3] 3L_11697903_DEL [dm6]	TGA	T	2.078e^-4	0.56	UPSTREAM CG11652 INTRON CG6053
3L	16674247	3L_16674247_SNP [dm3] 3L_16681147_SNP [dm6]	C	A	2.087e^-4	0.56	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17854754	2L_17854754_SNP [dm3] 2L_17854754_SNP [dm6]	A	C	2.096e^-4	0.56	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9759501	2L_9759501_SNP [dm3] 2L_9759501_SNP [dm6]	G	T	2.097e^-4	0.56	INTRON zf30C	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	11004357	2R_11004357_SNP [dm3] 2R_15116852_SNP [dm6]	A	G	2.097e^-4	0.56	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	2598515	3L_2598515_SNP [dm3] 3L_2598515_SNP [dm6]	T	G	2.109e^-4	0.56	NON_SYNONYMOUS_CODING CG12182 UPSTREAM CG16985
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	2.114e^-4	0.56	INTERGENIC
2L	17854809	2L_17854809_SNP [dm3] 2L_17854809_SNP [dm6]	A	T	2.114e^-4	0.56	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6721477	3L_6721477_SNP [dm3] 3L_6728377_SNP [dm6]	C	G	2.114e^-4	0.56	DOWNSTREAM dikar EXON CR45417	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7521029	2L_7521029_DEL [dm3] 2L_7521029_DEL [dm6]	GCGAAG	G	2.115e^-4	0.56	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	5337726	3L_5337726_SNP [dm3] 3L_5344626_SNP [dm6]	G	A	2.118e^-4	0.56	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13803605	3R_13803605_SNP [dm3] 3R_17977883_SNP [dm6]	T	A	2.118e^-4	0.56	INTRON cpo
3R	13173	3R_13173_SNP [dm3] 3R_4187451_SNP [dm6]	G	A	2.119e^-4	0.56	DOWNSTREAM CG12581 INTRON CR33294	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12875890	3L_12875890_SNP [dm3] 3L_12882790_SNP [dm6]	T	C	2.131e^-4	0.56	INTERGENIC
X	8390313	X_8390313_SNP [dm3] X_8496280_SNP [dm6]	A	T	2.134e^-4	0.56	INTRON CG33181
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	2.143e^-4	0.56	INTRON CG6040
3L	16224762	3L_16224762_SNP [dm3] 3L_16231662_SNP [dm6]	G	A	2.147e^-4	0.56	UPSTREAM MED10 DOWNSTREAM CG5027 INTRON PDCD-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	18251400	3L_18251400_SNP [dm3] 3L_18258300_SNP [dm6]	A	G	2.150e^-4	0.56	INTERGENIC
3L	2618472	3L_2618472_SNP [dm3] 3L_2618472_SNP [dm6]	G	A	2.154e^-4	0.56	INTRON Pxn
3L	9477964	3L_9477964_SNP [dm3] 3L_9484864_SNP [dm6]	A	G	2.156e^-4	0.56	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14154038	3R_14154038_SNP [dm3] 3R_18328316_SNP [dm6]	T	A	2.157e^-4	0.56	INTRON CG31235
3L	23642576	3L_23642576_SNP [dm3] 3L_23649476_SNP [dm6]	C	T	2.159e^-4	0.56	DOWNSTREAM AGO3 INTRON AGO3
2R	9386349	2R_9386349_SNP [dm3] 2R_13498844_SNP [dm6]	C	T	2.160e^-4	0.56	INTRON drk
2R	6491155	2R_6491155_SNP [dm3] 2R_10603650_SNP [dm6]	T	G	2.161e^-4	0.56	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	6905417	3R_6905417_SNP [dm3] 3R_11079695_SNP [dm6]	C	A	2.165e^-4	0.56	INTERGENIC
3R	9175017	3R_9175017_SNP [dm3] 3R_13349295_SNP [dm6]	C	T	2.167e^-4	0.56	INTERGENIC
3L	23438911	3L_23438911_SNP [dm3] 3L_23445811_SNP [dm6]	A	T	2.169e^-4	0.56	INTERGENIC
2L	16420589	2L_16420589_SNP [dm3] 2L_16420589_SNP [dm6]	G	A	2.169e^-4	0.56	INTRON CG5888
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	2.173e^-4	0.56	INTRON bol
X	17874855	X_17874855_SNP [dm3] X_17980822_SNP [dm6]	C	G	2.175e^-4	0.56	INTRON Sh
2R	20188166	2R_20188166_SNP [dm3] 2R_24300643_SNP [dm6]	G	A	2.183e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25969990	3R_25969990_SNP [dm3] 3R_30144268_SNP [dm6]	A	C	2.185e^-4	0.56	INTRON AdoR
3R	12747068	3R_12747068_SNP [dm3] 3R_16921346_SNP [dm6]	T	C	2.188e^-4	0.56	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9141210	2L_9141210_SNP [dm3] 2L_9141210_SNP [dm6]	T	A	2.193e^-4	0.56	INTRON CG32982
3L	3670619	3L_3670619_SNP [dm3] 3L_3670619_SNP [dm6]	G	A	2.194e^-4	0.56	INTERGENIC
X	6794918	X_6794918_SNP [dm3] X_6900885_SNP [dm6]	C	T	2.195e^-4	0.56	INTERGENIC
3R	2018626	3R_2018626_SNP [dm3] 3R_6192904_SNP [dm6]	A	C	2.199e^-4	0.56	INTRON NPFR
X	5151580	X_5151580_SNP [dm3] X_5257547_SNP [dm6]	G	T	2.205e^-4	0.56	INTERGENIC
3L	13398190	3L_13398190_SNP [dm3] 3L_13405090_SNP [dm6]	A	T	2.206e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4091686	3L_4091686_SNP [dm3] 3L_4091686_SNP [dm6]	A	G	2.207e^-4	0.56	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2L	12272691	2L_12272691_INS [dm3] 2L_12272691_INS [dm6]	A	ATA	2.208e^-4	0.56	INTRON aret
3L	9296615	3L_9296615_SNP [dm3] 3L_9303515_SNP [dm6]	G	A	2.208e^-4	0.56	INTERGENIC
2L	8154090	2L_8154090_SNP [dm3] 2L_8154090_SNP [dm6]	A	T	2.209e^-4	0.56	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5696244	3R_5696244_SNP [dm3] 3R_9870522_SNP [dm6]	T	A	2.209e^-4	0.56	INTERGENIC
X	9808022	X_9808022_SNP [dm3] X_9913989_SNP [dm6]	C	T	2.210e^-4	0.56	INTERGENIC
3L	13388094	3L_13388094_SNP [dm3] 3L_13394994_SNP [dm6]	A	T	2.212e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	2519123	3L_2519123_SNP [dm3] 3L_2519123_SNP [dm6]	A	G	2.214e^-4	0.56	DOWNSTREAM CR45170 INTRON Spn
2R	18241356	2R_18241356_SNP [dm3] 2R_22353851_SNP [dm6]	T	C	2.215e^-4	0.56	INTRON Liprin-gamma
3L	17823926	3L_17823926_SNP [dm3] 3L_17830826_SNP [dm6]	A	C	2.215e^-4	0.56	INTRON Grd
3L	12541209	3L_12541209_INS [dm3] 3L_12548109_INS [dm6]	G	GGTATT	2.215e^-4	0.56	INTRON sowah
2L	6458486	2L_6458486_SNP [dm3] 2L_6458486_SNP [dm6]	C	T	2.217e^-4	0.56	SYNONYMOUS_CODING frj DOWNSTREAM CG16947
3L	5252463	3L_5252463_SNP [dm3] 3L_5259363_SNP [dm6]	A	T	2.222e^-4	0.56	INTRON shep
3L	8545077	3L_8545077_SNP [dm3] 3L_8551977_SNP [dm6]	T	C	2.228e^-4	0.56	INTRON rhea
2L	2120061	2L_2120061_INS [dm3] 2L_2120061_INS [dm6]	G	GA	2.229e^-4	0.56	INTERGENIC
3R	8771504	3R_8771504_SNP [dm3] 3R_12945782_SNP [dm6]	T	A	2.242e^-4	0.56	INTERGENIC
X	13719484	X_13719484_SNP [dm3] X_13825451_SNP [dm6]	T	C	2.242e^-4	0.56	SYNONYMOUS_CODING Nup93-1 DOWNSTREAM jub	TF binding site mE1_TFBS_sens
3L	9290986	3L_9290986_SNP [dm3] 3L_9297886_SNP [dm6]	A	G	2.243e^-4	0.56	INTERGENIC
2L	17851878	2L_17851878_SNP [dm3] 2L_17851878_SNP [dm6]	C	T	2.243e^-4	0.56	INTRON CadN2
2R	3404545	2R_3404545_SNP [dm3] 2R_7517040_SNP [dm6]	T	C	2.245e^-4	0.56	NON_SYNONYMOUS_CODING CG1602 UPSTREAM CG1603	TF binding site mE1_TFBS_cad
X	6794924	X_6794924_SNP [dm3] X_6900891_SNP [dm6]	A	T	2.245e^-4	0.56	INTERGENIC
3L	7202378	3L_7202378_SNP [dm3] 3L_7209278_SNP [dm6]	C	A	2.245e^-4	0.56	INTERGENIC
3L	9874938	3L_9874938_SNP [dm3] 3L_9881838_SNP [dm6]	A	T	2.246e^-4	0.56	INTRON CG34382
2L	12204680	2L_12204680_SNP [dm3] 2L_12204680_SNP [dm6]	T	G	2.248e^-4	0.56	INTRON aret
3L	10901483	3L_10901483_SNP [dm3] 3L_10908383_SNP [dm6]	G	C	2.248e^-4	0.56	INTERGENIC
3R	8728388	3R_8728388_SNP [dm3] 3R_12902666_SNP [dm6]	A	G	2.252e^-4	0.56	INTERGENIC
3L	11690989	3L_11690989_SNP [dm3] 3L_11697889_SNP [dm6]	G	A	2.252e^-4	0.56	UPSTREAM CG11652 INTRON CG6053
X	15030157	X_15030157_SNP [dm3] X_15136124_SNP [dm6]	T	C	2.252e^-4	0.56	SYNONYMOUS_CODING drd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15030205	X_15030205_SNP [dm3] X_15136172_SNP [dm6]	C	T	2.252e^-4	0.56	SYNONYMOUS_CODING drd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11003242	2R_11003242_SNP [dm3] 2R_15115737_SNP [dm6]	T	C	2.254e^-4	0.56	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12627802	2R_12627802_SNP [dm3] 2R_16740297_SNP [dm6]	T	C	2.261e^-4	0.56	INTERGENIC
3L	1917816	3L_1917816_SNP [dm3] 3L_1917816_SNP [dm6]	C	G	2.261e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11451453	3L_11451453_SNP [dm3] 3L_11458353_SNP [dm6]	T	A	2.266e^-4	0.56	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3R	8424949	3R_8424949_SNP [dm3] 3R_12599227_SNP [dm6]	C	T	2.267e^-4	0.56	INTERGENIC
3L	4233060	3L_4233060_SNP [dm3] 3L_4233060_SNP [dm6]	A	G	2.269e^-4	0.56	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7930432	3L_7930432_SNP [dm3] 3L_7937332_SNP [dm6]	T	A	2.272e^-4	0.56	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9823186	2R_9823186_SNP [dm3] 2R_13935681_SNP [dm6]	A	G	2.274e^-4	0.56	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11777322	2L_11777322_SNP [dm3] 2L_11777322_SNP [dm6]	G	A	2.277e^-4	0.56	INTERGENIC
3R	8372705	3R_8372705_SNP [dm3] 3R_12546983_SNP [dm6]	A	G	2.281e^-4	0.56	INTRON Octbeta3R
2L	12338171	2L_12338171_SNP [dm3] 2L_12338171_SNP [dm6]	C	A	2.283e^-4	0.56	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13889480	3L_13889480_SNP [dm3] 3L_13896380_SNP [dm6]	C	T	2.283e^-4	0.56	INTRON dysc
X	18218920	X_18218920_SNP [dm3] X_18324887_SNP [dm6]	C	T	2.287e^-4	0.56	UTR_3_PRIME CG6123
3L	13903722	3L_13903722_SNP [dm3] 3L_13910622_SNP [dm6]	G	T	2.290e^-4	0.56	INTRON Rgl
3R	22427874	3R_22427874_SNP [dm3] 3R_26602152_SNP [dm6]	C	T	2.306e^-4	0.562	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8397215	3R_8397215_SNP [dm3] 3R_12571493_SNP [dm6]	T	C	2.310e^-4	0.562	INTRON Octbeta2R
3R	13797162	3R_13797162_SNP [dm3] 3R_17971440_SNP [dm6]	G	A	2.310e^-4	0.562	INTRON cpo
2R	19648351	2R_19648351_SNP [dm3] 2R_23760828_SNP [dm6]	A	T	2.311e^-4	0.562	INTRON CG9850
3L	13834156	3L_13834156_SNP [dm3] 3L_13841056_SNP [dm6]	G	T	2.315e^-4	0.562	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15926141	2R_15926141_SNP [dm3] 2R_20038636_SNP [dm6]	A	G	2.321e^-4	0.562	INTERGENIC
3L	12257331	3L_12257331_SNP [dm3] 3L_12264231_SNP [dm6]	T	G	2.327e^-4	0.562	INTRON app
3L	5605583	3L_5605583_INS [dm3] 3L_5612483_INS [dm6]	T	TGTAT	2.328e^-4	0.562	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8990693	2R_8990693_SNP [dm3] 2R_13103188_SNP [dm6]	C	G	2.330e^-4	0.562	UPSTREAM CG44341 INTERGENIC
3L	12061645	3L_12061645_SNP [dm3] 3L_12068545_SNP [dm6]	G	T	2.331e^-4	0.562	SYNONYMOUS_CODING Sema-5c
2R	19327352	2R_19327352_SNP [dm3] 2R_23439829_SNP [dm6]	C	T	2.332e^-4	0.562	DOWNSTREAM Or59a INTERGENIC
X	16435554	X_16435554_SNP [dm3] X_16541521_SNP [dm6]	C	T	2.333e^-4	0.562	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
2L	6313295	2L_6313295_SNP [dm3] 2L_6313295_SNP [dm6]	T	A	2.338e^-4	0.562	INTRON Ddr
3R	22954179	3R_22954179_SNP [dm3] 3R_27128457_SNP [dm6]	G	A	2.344e^-4	0.562	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8689156	3R_8689156_DEL [dm3] 3R_12863434_DEL [dm6]	TCCT	T	2.347e^-4	0.562	INTERGENIC
3R	9176313	3R_9176313_SNP [dm3] 3R_13350591_SNP [dm6]	T	A	2.359e^-4	0.562	INTERGENIC
X	15030049	X_15030049_SNP [dm3] X_15136016_SNP [dm6]	C	A	2.361e^-4	0.562	SYNONYMOUS_CODING drd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16674389	3L_16674389_SNP [dm3] 3L_16681289_SNP [dm6]	G	A	2.362e^-4	0.562	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8686705	2L_8686705_SNP [dm3] 2L_8686705_SNP [dm6]	C	T	2.362e^-4	0.562	SYNONYMOUS_CODING Trs23 UPSTREAM PrBP DOWNSTREAM Hnf4
X	6794921	X_6794921_INS [dm3] X_6900888_INS [dm6]	A	AA	2.368e^-4	0.562	INTERGENIC
2L	9232839	2L_9232839_SNP [dm3] 2L_9232839_SNP [dm6]	T	C	2.369e^-4	0.562	INTRON tai
X	22051532	X_22051532_DEL [dm3] X_22649696_DEL [dm6]	ATA	A	2.372e^-4	0.562	INTERGENIC
X	19977137	X_19977137_SNP [dm3] X_20083104_SNP [dm6]	A	G	2.380e^-4	0.562	INTERGENIC
2R	3080391	2R_3080391_SNP [dm3] 2R_7192886_SNP [dm6]	C	A	2.387e^-4	0.562	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
2L	18441401	2L_18441401_SNP [dm3] 2L_18441401_SNP [dm6]	C	T	2.388e^-4	0.562	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7078534	3R_7078534_SNP [dm3] 3R_11252812_SNP [dm6]	G	A	2.388e^-4	0.562	INTRON CR43283 EXON CR43283
3L	13388237	3L_13388237_SNP [dm3] 3L_13395137_SNP [dm6]	T	G	2.389e^-4	0.562	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16018588	3R_16018588_SNP [dm3] 3R_20192866_SNP [dm6]	T	G	2.391e^-4	0.562	INTERGENIC
2L	12338162	2L_12338162_SNP [dm3] 2L_12338162_SNP [dm6]	G	A	2.393e^-4	0.562	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18736466	2L_18736466_INS [dm3] 2L_18736466_INS [dm6]	T	AA	2.393e^-4	0.562	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9858897	2L_9858897_DEL [dm3] 2L_9858897_DEL [dm6]	CAA	C	2.395e^-4	0.562	INTRON nAChRalpha6
3L	11923732	3L_11923732_SNP [dm3] 3L_11930632_SNP [dm6]	A	T	2.401e^-4	0.562	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17866089	2L_17866089_SNP [dm3] 2L_17866089_SNP [dm6]	C	T	2.402e^-4	0.562	INTRON CadN2
X	17875098	X_17875098_DEL [dm3] X_17981065_DEL [dm6]	TTGAG	T	2.402e^-4	0.562	INTRON Sh
3L	11690997	3L_11690997_SNP [dm3] 3L_11697897_SNP [dm6]	T	C	2.403e^-4	0.562	UPSTREAM CG11652 INTRON CG6053
3R	10803106	3R_10803106_SNP [dm3] 3R_14977384_SNP [dm6]	C	A	2.414e^-4	0.563	INTERGENIC
3L	14172702	3L_14172702_SNP [dm3] 3L_14179602_SNP [dm6]	A	C	2.420e^-4	0.563	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2L	6901840	2L_6901840_DEL [dm3] 2L_6901840_DEL [dm6]	AGTTGGTGCAGTGAACTT...	A	2.424e^-4	0.563	UPSTREAM mir-932 INTRON Nlg2
X	6794926	X_6794926_INS [dm3] X_6900893_INS [dm6]	T	TGATATA	2.424e^-4	0.563	INTERGENIC
X	6794928	X_6794928_SNP [dm3] X_6900895_SNP [dm6]	T	G	2.424e^-4	0.563	INTERGENIC
2L	2842686	2L_2842686_SNP [dm3] 2L_2842686_SNP [dm6]	A	T	2.431e^-4	0.563	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	6495482	3L_6495482_SNP [dm3] 3L_6502382_SNP [dm6]	T	A	2.451e^-4	0.563	INTRON sfl
2L	8228992	2L_8228992_SNP [dm3] 2L_8228992_SNP [dm6]	T	C	2.453e^-4	0.563	SYNONYMOUS_CODING Pvr
3R	16535496	3R_16535496_SNP [dm3] 3R_20709774_SNP [dm6]	G	T	2.460e^-4	0.563	INTRON Oamb
2R	16499195	2R_16499195_SNP [dm3] 2R_20611690_SNP [dm6]	A	T	2.462e^-4	0.563	INTRON Hil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10573432	3R_10573432_SNP [dm3] 3R_14747710_SNP [dm6]	T	A	2.468e^-4	0.563	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	9364161	2R_9364161_SNP [dm3] 2R_13476656_SNP [dm6]	G	A	2.479e^-4	0.563	UPSTREAM CG43192 INTRON arr
3L	6499516	3L_6499516_SNP [dm3] 3L_6506416_SNP [dm6]	G	A	2.482e^-4	0.563	INTRON sfl
3L	12409282	3L_12409282_SNP [dm3] 3L_12416182_SNP [dm6]	A	T	2.484e^-4	0.563	INTRON ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11268771	3L_11268771_SNP [dm3] 3L_11275671_SNP [dm6]	C	T	2.489e^-4	0.563	INTERGENIC
3L	9297155	3L_9297155_DEL [dm3] 3L_9304055_DEL [dm6]	ACC	A	2.489e^-4	0.563	INTERGENIC
3L	9295017	3L_9295017_SNP [dm3] 3L_9301917_SNP [dm6]	C	A	2.498e^-4	0.563	INTERGENIC
3L	6430088	3L_6430088_SNP [dm3] 3L_6436988_SNP [dm6]	G	T	2.500e^-4	0.563	INTRON CG42747
2L	5765073	2L_5765073_SNP [dm3] 2L_5765073_SNP [dm6]	A	C	2.501e^-4	0.563	INTRON obst-E
3L	1917814	3L_1917814_SNP [dm3] 3L_1917814_SNP [dm6]	G	A	2.508e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11220166	3L_11220166_SNP [dm3] 3L_11227066_SNP [dm6]	C	A	2.510e^-4	0.563	INTRON CG42671
3R	23156806	3R_23156806_SNP [dm3] 3R_27331084_SNP [dm6]	C	G	2.518e^-4	0.563	UPSTREAM CG3330 INTERGENIC
3L	13368285	3L_13368285_SNP [dm3] 3L_13375185_SNP [dm6]	C	T	2.520e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5583494	3R_5583494_SNP [dm3] 3R_9757772_SNP [dm6]	T	C	2.520e^-4	0.563	SYNONYMOUS_CODING CG8412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17481386	2L_17481386_SNP [dm3] 2L_17481386_SNP [dm6]	T	C	2.522e^-4	0.563	UPSTREAM fws DOWNSTREAM CG6453 INTRON CG5110	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12073525	3L_12073525_SNP [dm3] 3L_12080425_SNP [dm6]	A	G	2.523e^-4	0.563	INTRON Sema-5c	TF binding site BDTNP1_TFBS_Med
3R	13901016	3R_13901016_SNP [dm3] 3R_18075294_SNP [dm6]	G	C	2.526e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3413581	2R_3413581_SNP [dm3] 2R_7526076_SNP [dm6]	A	G	2.526e^-4	0.563	UPSTREAM Orc1 DOWNSTREAM Drat INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
X	17336620	X_17336620_SNP [dm3] X_17442587_SNP [dm6]	C	G	2.529e^-4	0.563	INTRON CG12994
2L	3100440	2L_3100440_SNP [dm3] 2L_3100440_SNP [dm6]	A	T	2.529e^-4	0.563	INTRON toc
3L	16224889	3L_16224889_SNP [dm3] 3L_16231789_SNP [dm6]	A	G	2.530e^-4	0.563	UPSTREAM MED10 DOWNSTREAM CG5027 INTRON PDCD-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9875006	3L_9875006_SNP [dm3] 3L_9881906_SNP [dm6]	A	C	2.532e^-4	0.563	INTRON CG34382
3L	11142845	3L_11142845_SNP [dm3] 3L_11149745_SNP [dm6]	G	T	2.533e^-4	0.563	UTR_3_PRIME CG6216 INTRON CG32082
2R	3772050	2R_3772050_SNP [dm3] 2R_7884545_SNP [dm6]	G	A	2.535e^-4	0.563	INTRON Dgk
3L	12257321	3L_12257321_SNP [dm3] 3L_12264221_SNP [dm6]	A	T	2.539e^-4	0.563	INTRON app
2L	17854788	2L_17854788_SNP [dm3] 2L_17854788_SNP [dm6]	T	A	2.544e^-4	0.563	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17854798	2L_17854798_SNP [dm3] 2L_17854798_SNP [dm6]	C	A	2.544e^-4	0.563	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9874958	3L_9874958_SNP [dm3] 3L_9881858_SNP [dm6]	T	C	2.546e^-4	0.563	INTRON CG34382
3L	14172481	3L_14172481_INS [dm3] 3L_14179381_INS [dm6]	T	TCCAACAGA	2.546e^-4	0.563	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
X	12446675	X_12446675_SNP [dm3] X_12552642_SNP [dm6]	A	C	2.548e^-4	0.563	UPSTREAM Cpr11B INTRON CG43921
3L	14172597	3L_14172597_SNP [dm3] 3L_14179497_SNP [dm6]	C	T	2.552e^-4	0.563	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	17042448	3L_17042448_SNP [dm3] 3L_17049348_SNP [dm6]	G	A	2.552e^-4	0.563	UPSTREAM rogdi DOWNSTREAM TpnC73F INTERGENIC
3R	14767271	3R_14767271_SNP [dm3] 3R_18941549_SNP [dm6]	T	A	2.555e^-4	0.563	INTRON CG42613
2R	18854082	2R_18854082_SNP [dm3] 2R_22966559_SNP [dm6]	G	A	2.557e^-4	0.563	INTERGENIC
3R	2745534	3R_2745534_SNP [dm3] 3R_6919812_SNP [dm6]	T	C	2.558e^-4	0.563	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13389285	3L_13389285_INS [dm3] 3L_13396185_INS [dm6]	A	ATCA	2.562e^-4	0.563	DOWNSTREAM sens INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14974067	3R_14974067_SNP [dm3] 3R_19148345_SNP [dm6]	A	G	2.563e^-4	0.563	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	18439409	2R_18439409_SNP [dm3] 2R_22551904_SNP [dm6]	C	T	2.563e^-4	0.563	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	14494853	3L_14494853_SNP [dm3] 3L_14501753_SNP [dm6]	T	C	2.564e^-4	0.563	INTRON bbg	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2101341	X_2101341_SNP [dm3] X_2207308_SNP [dm6]	G	A	2.569e^-4	0.563	INTRON msta
2R	3726318	2R_3726318_SNP [dm3] 2R_7838813_SNP [dm6]	A	G	2.570e^-4	0.563	INTRON Dgk
X	2106610	X_2106610_INS [dm3] X_2212577_INS [dm6]	T	TTCAA	2.571e^-4	0.563	UPSTREAM msta INTRON msta
X	2106614	X_2106614_SNP [dm3] X_2212581_SNP [dm6]	T	A	2.571e^-4	0.563	UPSTREAM msta INTRON msta
X	8634422	X_8634422_SNP [dm3] X_8740389_SNP [dm6]	T	A	2.572e^-4	0.563	INTERGENIC
3R	8353993	3R_8353993_SNP [dm3] 3R_12528271_SNP [dm6]	A	T	2.577e^-4	0.563	INTRON Octbeta3R & 1 other
3L	13889487	3L_13889487_SNP [dm3] 3L_13896387_SNP [dm6]	A	G	2.582e^-4	0.563	INTRON dysc
X	14085072	X_14085072_SNP [dm3] X_14191039_SNP [dm6]	T	A	2.583e^-4	0.563	DOWNSTREAM CG13403 & 1 other INTERGENIC
3R	13882803	3R_13882803_SNP [dm3] 3R_18057081_SNP [dm6]	A	C	2.589e^-4	0.563	INTERGENIC
2L	17828883	2L_17828883_SNP [dm3] 2L_17828883_SNP [dm6]	T	G	2.591e^-4	0.563	INTRON CadN2
3R	8528714	3R_8528714_SNP [dm3] 3R_12702992_SNP [dm6]	G	A	2.594e^-4	0.563	INTRON Past1	TF binding site mE1_TFBS_chinmo
X	2101359	X_2101359_SNP [dm3] X_2207326_SNP [dm6]	G	T	2.597e^-4	0.563	INTRON msta
3L	11441249	3L_11441249_SNP [dm3] 3L_11448149_SNP [dm6]	C	T	2.597e^-4	0.563	INTERGENIC
3R	15370103	3R_15370103_SNP [dm3] 3R_19544381_SNP [dm6]	G	T	2.599e^-4	0.563	INTRON Dys
X	16008128	X_16008128_SNP [dm3] X_16114095_SNP [dm6]	A	G	2.610e^-4	0.563	INTERGENIC
2R	11281619	2R_11281619_SNP [dm3] 2R_15394114_SNP [dm6]	A	T	2.621e^-4	0.563	INTERGENIC
2L	21724219	2L_21724219_SNP [dm3] 2L_21724219_SNP [dm6]	G	A	2.621e^-4	0.563	INTRON CG31619
X	18927962	X_18927962_SNP [dm3] X_19033929_SNP [dm6]	A	G	2.628e^-4	0.563	INTERGENIC
3L	11220237	3L_11220237_SNP [dm3] 3L_11227137_SNP [dm6]	C	T	2.632e^-4	0.563	INTRON CG42671
2L	16712028	2L_16712028_SNP [dm3] 2L_16712028_SNP [dm6]	C	A	2.634e^-4	0.563	INTRON CG31808
X	16564683	X_16564683_SNP [dm3] X_16670650_SNP [dm6]	C	G	2.644e^-4	0.563	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9826798	2R_9826798_SNP [dm3] 2R_13939293_SNP [dm6]	A	G	2.646e^-4	0.563	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13834190	3L_13834190_SNP [dm3] 3L_13841090_SNP [dm6]	A	C	2.651e^-4	0.563	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8515552	3R_8515552_SNP [dm3] 3R_12689830_SNP [dm6]	C	A	2.652e^-4	0.563	UPSTREAM kar DOWNSTREAM Su_fu_ INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15835155	3L_15835155_SNP [dm3] 3L_15842055_SNP [dm6]	T	C	2.654e^-4	0.563	INTRON CG32150
X	15141036	X_15141036_SNP [dm3] X_15247003_SNP [dm6]	T	G	2.655e^-4	0.563	INTERGENIC
X	13719487	X_13719487_SNP [dm3] X_13825454_SNP [dm6]	A	G	2.656e^-4	0.563	SYNONYMOUS_CODING Nup93-1 DOWNSTREAM jub	TF binding site mE1_TFBS_sens
3R	12747734	3R_12747734_SNP [dm3] 3R_16922012_SNP [dm6]	C	T	2.669e^-4	0.563	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9965560	3R_9965560_SNP [dm3] 3R_14139838_SNP [dm6]	G	A	2.670e^-4	0.563	INTERGENIC
3R	11305046	3R_11305046_SNP [dm3] 3R_15479324_SNP [dm6]	G	A	2.679e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14006458	3R_14006458_SNP [dm3] 3R_18180736_SNP [dm6]	A	C	2.680e^-4	0.563	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
3L	12257519	3L_12257519_SNP [dm3] 3L_12264419_SNP [dm6]	G	A	2.693e^-4	0.563	INTRON app
3L	10832471	3L_10832471_SNP [dm3] 3L_10839371_SNP [dm6]	T	A	2.696e^-4	0.563	INTERGENIC
X	15125216	X_15125216_SNP [dm3] X_15231183_SNP [dm6]	G	A	2.699e^-4	0.563	INTERGENIC
2L	10377596	2L_10377596_SNP [dm3] 2L_10377596_SNP [dm6]	A	T	2.701e^-4	0.563	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1521975	3L_1521975_SNP [dm3] 3L_1521975_SNP [dm6]	T	A	2.705e^-4	0.563	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	13065513	X_13065513_SNP [dm3] X_13171480_SNP [dm6]	A	C	2.706e^-4	0.563	INTRON CG34411
2L	17693525	2L_17693525_SNP [dm3] 2L_17693525_SNP [dm6]	G	A	2.716e^-4	0.563	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16984525	2L_16984525_SNP [dm3] 2L_16984525_SNP [dm6]	A	T	2.720e^-4	0.563	UPSTREAM CG31806 INTRON beat-IIIb
3L	17005270	3L_17005270_SNP [dm3] 3L_17012170_SNP [dm6]	C	T	2.732e^-4	0.563	UTR_5_PRIME CG3764 DOWNSTREAM CG6664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13848760	3R_13848760_SNP [dm3] 3R_18023038_SNP [dm6]	A	T	2.732e^-4	0.563	UTR_3_PRIME CG7785 UPSTREAM CG7794
2R	2959320	2R_2959320_SNP [dm3] 2R_7071815_SNP [dm6]	C	G	2.733e^-4	0.563	UTR_3_PRIME CG12831 UPSTREAM tRNA:CR30299	TF binding site mE1_TFBS_inv
3L	13834459	3L_13834459_SNP [dm3] 3L_13841359_SNP [dm6]	A	T	2.734e^-4	0.563	INTRON CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14169268	3R_14169268_SNP [dm3] 3R_18343546_SNP [dm6]	C	A	2.741e^-4	0.563	INTRON CG15803
X	7917548	X_7917548_SNP [dm3] X_8023515_SNP [dm6]	G	T	2.744e^-4	0.563	INTRON Tbh
3L	13889474	3L_13889474_SNP [dm3] 3L_13896374_SNP [dm6]	T	C	2.745e^-4	0.563	INTRON dysc
3L	17688310	3L_17688310_SNP [dm3] 3L_17695210_SNP [dm6]	G	A	2.747e^-4	0.563	INTRON Ccn
3L	11214442	3L_11214442_SNP [dm3] 3L_11221342_SNP [dm6]	A	G	2.749e^-4	0.563	INTRON CG42671
3L	12718109	3L_12718109_SNP [dm3] 3L_12725009_SNP [dm6]	G	A	2.751e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8391483	3R_8391483_SNP [dm3] 3R_12565761_SNP [dm6]	A	G	2.756e^-4	0.563	INTRON Octbeta2R
2L	2171282	2L_2171282_SNP [dm3] 2L_2171282_SNP [dm6]	T	C	2.757e^-4	0.563	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	15415663	X_15415663_SNP [dm3] X_15521630_SNP [dm6]	G	T	2.759e^-4	0.563	INTRON Ac13E
3L	17212703	3L_17212703_SNP [dm3] 3L_17219603_SNP [dm6]	A	G	2.762e^-4	0.563	INTRON Rbp6
2R	9826952	2R_9826952_SNP [dm3] 2R_13939447_SNP [dm6]	C	T	2.764e^-4	0.563	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17542647	3R_17542647_SNP [dm3] 3R_21716925_SNP [dm6]	G	A	2.766e^-4	0.563	INTRON CG31176
3L	12072739	3L_12072739_SNP [dm3] 3L_12079639_SNP [dm6]	T	C	2.770e^-4	0.563	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8172862	3R_8172862_SNP [dm3] 3R_12347140_SNP [dm6]	G	A	2.770e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8350903	3R_8350903_SNP [dm3] 3R_12525181_SNP [dm6]	C	T	2.775e^-4	0.563	INTRON Octbeta3R
2R	18839484	2R_18839484_SNP [dm3] 2R_22951961_SNP [dm6]	A	T	2.775e^-4	0.563	INTRON CR32835
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	2.777e^-4	0.563	INTRON Oamb
X	2104265	X_2104265_SNP [dm3] X_2210232_SNP [dm6]	G	A	2.778e^-4	0.563	INTRON msta
3L	11313560	3L_11313560_INS [dm3] 3L_11320460_INS [dm6]	G	GCAG	2.779e^-4	0.563	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
3L	13829781	3L_13829781_INS [dm3] 3L_13836681_INS [dm6]	C	CCC	2.779e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16200984	3L_16200984_SNP [dm3] 3L_16207884_SNP [dm6]	G	T	2.782e^-4	0.563	INTERGENIC
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	2.784e^-4	0.563	INTRON Flo2 & 1 other
2L	2249720	2L_2249720_INS [dm3] 2L_2249720_INS [dm6]	T	TCGC	2.786e^-4	0.563	DOWNSTREAM Ser12 INTERGENIC
3L	11215254	3L_11215254_SNP [dm3] 3L_11222154_SNP [dm6]	A	G	2.787e^-4	0.563	INTRON CG42671
2L	9191493	2L_9191493_SNP [dm3] 2L_9191493_SNP [dm6]	C	G	2.789e^-4	0.563	INTRON tai
3L	13412609	3L_13412609_SNP [dm3] 3L_13419509_SNP [dm6]	C	T	2.798e^-4	0.563	INTRON CG32121	TF binding site mE1_TFBS_chinmo
3L	17024918	3L_17024918_SNP [dm3] 3L_17031818_SNP [dm6]	A	T	2.800e^-4	0.563	DOWNSTREAM CR45756 INTRON Ilp8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2251208	2L_2251208_SNP [dm3] 2L_2251208_SNP [dm6]	C	T	2.805e^-4	0.563	SYNONYMOUS_CODING Ser12 DOWNSTREAM CG17239
3L	11453255	3L_11453255_SNP [dm3] 3L_11460155_SNP [dm6]	G	A	2.813e^-4	0.563	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8699166	3L_8699166_SNP [dm3] 3L_8706066_SNP [dm6]	C	A	2.816e^-4	0.563	INTERGENIC	TF binding site mE1_TFBS_cad
X	17874951	X_17874951_SNP [dm3] X_17980918_SNP [dm6]	C	G	2.816e^-4	0.563	INTRON Sh
3L	6495477	3L_6495477_SNP [dm3] 3L_6502377_SNP [dm6]	G	A	2.826e^-4	0.563	INTRON sfl
2R	8179526	2R_8179526_SNP [dm3] 2R_12292021_SNP [dm6]	A	G	2.826e^-4	0.563	INTRON CG42700
2R	16736459	2R_16736459_SNP [dm3] 2R_20848954_SNP [dm6]	T	C	2.828e^-4	0.563	SYNONYMOUS_CODING CG17999
3R	13954168	3R_13954168_SNP [dm3] 3R_18128446_SNP [dm6]	G	A	2.830e^-4	0.563	INTRON sr
3R	7161706	3R_7161706_SNP [dm3] 3R_11335984_SNP [dm6]	G	A	2.835e^-4	0.563	INTRON pros	TF binding site BDTNP1_TFBS_dl
X	8434767	X_8434767_SNP [dm3] X_8540734_SNP [dm6]	C	T	2.836e^-4	0.563	INTRON Nrg
2L	9418283	2L_9418283_SNP [dm3] 2L_9418283_SNP [dm6]	G	A	2.837e^-4	0.563	INTRON Mco1
3L	13382139	3L_13382139_SNP [dm3] 3L_13389039_SNP [dm6]	G	A	2.839e^-4	0.563	SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	17864744	2L_17864744_SNP [dm3] 2L_17864744_SNP [dm6]	A	G	2.841e^-4	0.563	INTRON CadN2
2R	17107810	2R_17107810_SNP [dm3] 2R_21220305_SNP [dm6]	G	C	2.843e^-4	0.563	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	11220177	3L_11220177_SNP [dm3] 3L_11227077_SNP [dm6]	A	T	2.846e^-4	0.563	INTRON CG42671
X	15415668	X_15415668_SNP [dm3] X_15521635_SNP [dm6]	T	C	2.849e^-4	0.563	INTRON Ac13E
2L	9990420	2L_9990420_SNP [dm3] 2L_9990420_SNP [dm6]	C	T	2.852e^-4	0.563	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16468504	2L_16468504_SNP [dm3] 2L_16468504_SNP [dm6]	G	A	2.856e^-4	0.563	SYNONYMOUS_CODING dac
2R	3080267	2R_3080267_SNP [dm3] 2R_7192762_SNP [dm6]	G	T	2.858e^-4	0.563	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
2L	17862994	2L_17862994_SNP [dm3] 2L_17862994_SNP [dm6]	G	T	2.861e^-4	0.563	INTRON CadN2
3L	9913171	3L_9913171_SNP [dm3] 3L_9920071_SNP [dm6]	A	C	2.867e^-4	0.563	INTRON CG34356
2L	2249003	2L_2249003_SNP [dm3] 2L_2249003_SNP [dm6]	T	C	2.867e^-4	0.563	INTERGENIC
2R	9823175	2R_9823175_SNP [dm3] 2R_13935670_SNP [dm6]	A	G	2.870e^-4	0.563	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12061301	3L_12061301_SNP [dm3] 3L_12068201_SNP [dm6]	G	A	2.872e^-4	0.563	SYNONYMOUS_CODING Sema-5c
3R	25680067	3R_25680067_SNP [dm3] 3R_29854345_SNP [dm6]	T	C	2.873e^-4	0.563	UTR_3_PRIME Cad99C DOWNSTREAM dgt1
3L	15081037	3L_15081037_DEL [dm3] 3L_15087937_DEL [dm6]	TTTTATATA	T	2.873e^-4	0.563	INTRON cp309
3R	4225649	3R_4225649_SNP [dm3] 3R_8399927_SNP [dm6]	T	A	2.876e^-4	0.563	INTRON CG45263
3R	12747756	3R_12747756_INS [dm3] 3R_16922034_INS [dm6]	A	ACA	2.880e^-4	0.563	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	2.883e^-4	0.563	EXON CR45680
2R	11929665	2R_11929665_SNP [dm3] 2R_16042160_SNP [dm6]	G	C	2.885e^-4	0.563	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo
2R	18599855	2R_18599855_SNP [dm3] 2R_22712350_SNP [dm6]	G	T	2.900e^-4	0.563	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CG30268
2R	13140694	2R_13140694_SNP [dm3] 2R_17253189_SNP [dm6]	A	C	2.901e^-4	0.563	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	22051578	X_22051578_SNP [dm3] X_22649742_SNP [dm6]	C	A	2.903e^-4	0.563	INTERGENIC
X	6794936	X_6794936_SNP [dm3] X_6900903_SNP [dm6]	C	A	2.904e^-4	0.563	INTERGENIC
2L	12490239	2L_12490239_SNP [dm3] 2L_12490239_SNP [dm6]	C	G	2.904e^-4	0.563	INTRON bun
3R	22954355	3R_22954355_INS [dm3] 3R_27128633_INS [dm6]	A	AAA	2.906e^-4	0.563	SPLICE_SITE_REGION CG6051 INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18853277	2R_18853277_SNP [dm3] 2R_22965754_SNP [dm6]	A	G	2.908e^-4	0.563	INTERGENIC
2L	6313618	2L_6313618_SNP [dm3] 2L_6313618_SNP [dm6]	A	G	2.914e^-4	0.563	INTRON Ddr
X	5149978	X_5149978_SNP [dm3] X_5255945_SNP [dm6]	T	G	2.920e^-4	0.563	INTERGENIC
3L	7640017	3L_7640017_DEL [dm3] 3L_7646917_DEL [dm6]	CCTTCGT	C	2.921e^-4	0.563	INTERGENIC
3R	16521866	3R_16521866_SNP [dm3] 3R_20696144_SNP [dm6]	A	C	2.922e^-4	0.563	INTRON Oamb
2L	17791238	2L_17791238_INS [dm3] 2L_17791238_INS [dm6]	A	AT	2.923e^-4	0.563	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6794951	X_6794951_SNP [dm3] X_6900918_SNP [dm6]	C	T	2.925e^-4	0.563	INTERGENIC
X	20630483	X_20630483_SNP [dm3] X_20759456_SNP [dm6]	A	T	2.926e^-4	0.563	DOWNSTREAM CR43838 EXON CR44710
3R	6992774	3R_6992774_SNP [dm3] 3R_11167052_SNP [dm6]	G	A	2.933e^-4	0.563	SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
3L	9455992	3L_9455992_SNP [dm3] 3L_9462892_SNP [dm6]	G	T	2.933e^-4	0.563	UTR_5_PRIME CG44838 UPSTREAM CG44838 INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7968714	2L_7968714_SNP [dm3] 2L_7968714_SNP [dm6]	A	T	2.938e^-4	0.563	INTRON Snoo
2L	11433751	2L_11433751_SNP [dm3] 2L_11433751_SNP [dm6]	G	A	2.943e^-4	0.563	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9557704	2L_9557704_SNP [dm3] 2L_9557704_SNP [dm6]	G	A	2.947e^-4	0.563	INTRON jp
3R	6997257	3R_6997257_SNP [dm3] 3R_11171535_SNP [dm6]	C	T	2.955e^-4	0.563	SYNONYMOUS_CODING Ugt35a
3L	13392329	3L_13392329_SNP [dm3] 3L_13399229_SNP [dm6]	G	C	2.964e^-4	0.563	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23618582	3L_23618582_SNP [dm3] 3L_23625482_SNP [dm6]	T	A	2.966e^-4	0.563	INTRON AGO3	transposable element FlyBase
2R	19004045	2R_19004045_SNP [dm3] 2R_23116522_SNP [dm6]	T	C	2.967e^-4	0.563	INTERGENIC
3R	18765514	3R_18765514_SNP [dm3] 3R_22939792_SNP [dm6]	G	C	2.970e^-4	0.563	INTRON klg
X	6794964	X_6794964_SNP [dm3] X_6900931_SNP [dm6]	T	G	2.976e^-4	0.563	INTERGENIC
X	6794989	X_6794989_SNP [dm3] X_6900956_SNP [dm6]	A	T	2.976e^-4	0.563	INTERGENIC
3L	11356307	3L_11356307_SNP [dm3] 3L_11363207_SNP [dm6]	A	G	2.979e^-4	0.563	INTRON CG6163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16610976	2R_16610976_SNP [dm3] 2R_20723471_SNP [dm6]	C	T	2.981e^-4	0.563	DOWNSTREAM CR44660 INTRON dpr
2R	8589972	2R_8589972_SNP [dm3] 2R_12702467_SNP [dm6]	C	G	2.985e^-4	0.563	INTERGENIC
2R	14447706	2R_14447706_SNP [dm3] 2R_18560201_SNP [dm6]	A	G	2.993e^-4	0.563	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11453008	3L_11453008_DEL [dm3] 3L_11459908_DEL [dm6]	TT	T	3.000e^-4	0.563	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17005362	3L_17005362_SNP [dm3] 3L_17012262_SNP [dm6]	G	A	3.004e^-4	0.563	UTR_5_PRIME CG3764 DOWNSTREAM CG6664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17005392	3L_17005392_SNP [dm3] 3L_17012292_SNP [dm6]	C	G	3.004e^-4	0.563	UTR_5_PRIME CG3764 DOWNSTREAM CG6664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3413567	2R_3413567_SNP [dm3] 2R_7526062_SNP [dm6]	G	T	3.009e^-4	0.563	UPSTREAM Orc1 DOWNSTREAM Drat INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
2R	3840694	2R_3840694_SNP [dm3] 2R_7953189_SNP [dm6]	T	A	3.010e^-4	0.563	INTRON CG14764
2R	8897627	2R_8897627_SNP [dm3] 2R_13010122_SNP [dm6]	A	T	3.013e^-4	0.563	INTERGENIC
2R	8905042	2R_8905042_SNP [dm3] 2R_13017537_SNP [dm6]	T	G	3.013e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13807546	3R_13807546_SNP [dm3] 3R_17981824_SNP [dm6]	A	C	3.014e^-4	0.563	INTRON cpo
X	12446656	X_12446656_SNP [dm3] X_12552623_SNP [dm6]	T	C	3.015e^-4	0.563	UPSTREAM Cpr11B INTRON CG43921
X	12446669	X_12446669_SNP [dm3] X_12552636_SNP [dm6]	T	C	3.015e^-4	0.563	UPSTREAM Cpr11B INTRON CG43921
X	12446674	X_12446674_SNP [dm3] X_12552641_SNP [dm6]	C	G	3.015e^-4	0.563	UPSTREAM Cpr11B INTRON CG43921
2R	10422327	2R_10422327_SNP [dm3] 2R_14534822_SNP [dm6]	C	A	3.018e^-4	0.563	INTRON ttv
3L	18456398	3L_18456398_DEL [dm3] 3L_18463298_DEL [dm6]	AACTA	A	3.020e^-4	0.563	UPSTREAM CG4306 INTERGENIC
2L	2016210	2L_2016210_SNP [dm3] 2L_2016210_SNP [dm6]	T	C	3.022e^-4	0.563	INTRON CG4238
3L	13889615	3L_13889615_INS [dm3] 3L_13896515_INS [dm6]	A	AGA	3.023e^-4	0.563	INTRON dysc
3L	12360546	3L_12360546_SNP [dm3] 3L_12367446_SNP [dm6]	C	A	3.024e^-4	0.563	INTERGENIC
3R	6996631	3R_6996631_SNP [dm3] 3R_11170909_SNP [dm6]	G	C	3.024e^-4	0.563	UTR_3_PRIME Ugt35a UPSTREAM Ugt35b
X	17331300	X_17331300_SNP [dm3] X_17437267_SNP [dm6]	C	T	3.025e^-4	0.563	INTRON CG12994
X	16140281	X_16140281_SNP [dm3] X_16246248_SNP [dm6]	C	G	3.027e^-4	0.563	INTERGENIC

By genomic position
Variant impact
Gene name

Locomot_Activity_MPH phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results