DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.429e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1618 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14910589	3R_14910589_SNP [dm3] 3R_19084867_SNP [dm6]	A	G	3.950e^-6	0.982	INTRON cdi
2R	18072035	2R_18072035_SNP [dm3] 2R_22184530_SNP [dm6]	C	T	4.819e^-6	0.982	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18072045	2R_18072045_SNP [dm3] 2R_22184540_SNP [dm6]	C	T	4.819e^-6	0.982	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10403886	3L_10403886_SNP [dm3] 3L_10410786_SNP [dm6]	T	G	5.520e^-6	0.982	DOWNSTREAM CR44543 INTERGENIC
3L	10403889	3L_10403889_SNP [dm3] 3L_10410789_SNP [dm6]	A	G	5.520e^-6	0.982	DOWNSTREAM CR44543 INTERGENIC
3L	14896297	3L_14896297_SNP [dm3] 3L_14903197_SNP [dm6]	G	T	6.570e^-6	0.982	UPSTREAM DCX-EMAP INTERGENIC
2L	21862168	2L_21862168_SNP [dm3] 2L_21862168_SNP [dm6]	G	C	8.895e^-6	0.982	INTRON CR44917
3L	10403943	3L_10403943_SNP [dm3] 3L_10410843_SNP [dm6]	A	T	9.208e^-6	0.982	DOWNSTREAM CR44543 INTERGENIC
2R	9233609	2R_9233609_SNP [dm3] 2R_13346104_SNP [dm6]	T	G	9.314e^-6	0.982	INTRON CR44206
2R	14976234	2R_14976234_SNP [dm3] 2R_19088729_SNP [dm6]	T	C	9.598e^-6	0.982	INTRON 5-HT1A
3R	18932682	3R_18932682_SNP [dm3] 3R_23106960_SNP [dm6]	C	T	9.940e^-6	0.982	INTRON CG13830
3L	18629836	3L_18629836_SNP [dm3] 3L_18636736_SNP [dm6]	G	A	1.015e^-5	0.982	INTRON MYPT-75D
3L	19283281	3L_19283281_SNP [dm3] 3L_19290181_SNP [dm6]	G	C	1.127e^-5	0.982	INTRON Gbs-76A
2L	1983727	2L_1983727_SNP [dm3] 2L_1983727_SNP [dm6]	G	A	1.159e^-5	0.982	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
2L	1983847	2L_1983847_SNP [dm3] 2L_1983847_SNP [dm6]	C	T	1.159e^-5	0.982	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
3L	10403783	3L_10403783_SNP [dm3] 3L_10410683_SNP [dm6]	G	C	1.189e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10403914	3L_10403914_SNP [dm3] 3L_10410814_SNP [dm6]	G	A	1.191e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC
X	14760238	X_14760238_SNP [dm3] X_14866205_SNP [dm6]	T	C	1.198e^-5	0.982	UTR_5_PRIME CG9518 INTRON Flo2
2L	1983709	2L_1983709_SNP [dm3] 2L_1983709_SNP [dm6]	C	T	1.272e^-5	0.982	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
X	7068014	X_7068014_SNP [dm3] X_7173981_SNP [dm6]	C	T	1.737e^-5	0.982	INTRON CG9650 & 1 other
X	7068035	X_7068035_SNP [dm3] X_7174002_SNP [dm6]	G	A	1.737e^-5	0.982	INTRON CG9650 & 1 other
2R	16859928	2R_16859928_SNP [dm3] 2R_20972423_SNP [dm6]	G	C	1.797e^-5	0.982	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7068102	X_7068102_SNP [dm3] X_7174069_SNP [dm6]	T	C	2.040e^-5	0.982	INTRON CG9650 & 1 other
3L	6963006	3L_6963006_SNP [dm3] 3L_6969906_SNP [dm6]	C	T	2.068e^-5	0.982	SYNONYMOUS_CODING CG9953 UPSTREAM Mis12	TF binding site mE1_TFBS_ttk
X	20741689	X_20741689_SNP [dm3] X_20870662_SNP [dm6]	A	C	2.099e^-5	0.982	INTRON shakB
3L	10403963	3L_10403963_SNP [dm3] 3L_10410863_SNP [dm6]	T	C	2.184e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC
3L	10403993	3L_10403993_INS [dm3] 3L_10410893_INS [dm6]	A	AAATGCATTG	2.263e^-5	0.982	EXON CR44543
X	16847551	X_16847551_SNP [dm3] X_16953518_SNP [dm6]	A	G	2.357e^-5	0.982	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19014447	3L_19014447_SNP [dm3] 3L_19021347_SNP [dm6]	G	T	2.409e^-5	0.982	INTRON nkd
3L	12875560	3L_12875560_SNP [dm3] 3L_12882460_SNP [dm6]	G	A	2.543e^-5	0.982	INTERGENIC
X	10985102	X_10985102_SNP [dm3] X_11091069_SNP [dm6]	G	A	2.567e^-5	0.982	SYNONYMOUS_CODING CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18932567	3R_18932567_SNP [dm3] 3R_23106845_SNP [dm6]	G	T	2.838e^-5	0.982	INTRON CG13830
2L	10493203	2L_10493203_SNP [dm3] 2L_10493203_SNP [dm6]	A	G	2.838e^-5	0.982	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22247251	3R_22247251_DEL [dm3] 3R_26421529_DEL [dm6]	TCTGCTT	G	2.859e^-5	0.982	INTERGENIC
3R	22247259	3R_22247259_SNP [dm3] 3R_26421537_SNP [dm6]	T	C	2.859e^-5	0.982	INTERGENIC
3R	18932685	3R_18932685_SNP [dm3] 3R_23106963_SNP [dm6]	A	G	3.354e^-5	0.982	INTRON CG13830
3L	12875562	3L_12875562_SNP [dm3] 3L_12882462_SNP [dm6]	G	T	3.395e^-5	0.982	INTERGENIC
3L	10403929	3L_10403929_SNP [dm3] 3L_10410829_SNP [dm6]	T	A	3.648e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC
2L	3188550	2L_3188550_SNP [dm3] 2L_3188550_SNP [dm6]	C	A	3.701e^-5	0.982	INTRON CG34393
3L	6963971	3L_6963971_SNP [dm3] 3L_6970871_SNP [dm6]	G	A	3.850e^-5	0.982	DOWNSTREAM CG10063 INTRON CG9953	TF binding site mE1_TFBS_sens
2L	21153694	2L_21153694_SNP [dm3] 2L_21153694_SNP [dm6]	G	C	3.885e^-5	0.982	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16443893	3R_16443893_SNP [dm3] 3R_20618171_SNP [dm6]	T	A	3.953e^-5	0.982	INTRON CG5466	TF binding site mE1_TFBS_chinmo
2L	18225662	2L_18225662_SNP [dm3] 2L_18225662_SNP [dm6]	A	C	4.026e^-5	0.982	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15265407	3L_15265407_SNP [dm3] 3L_15272307_SNP [dm6]	G	T	4.030e^-5	0.982	INTERGENIC
3R	18932688	3R_18932688_SNP [dm3] 3R_23106966_SNP [dm6]	G	C	4.110e^-5	0.982	INTRON CG13830
X	2649533	X_2649533_DEL [dm3] X_2755500_DEL [dm6]	ATATG	A	4.198e^-5	0.982	INTRON kirre
2L	2204413	2L_2204413_SNP [dm3] 2L_2204413_SNP [dm6]	A	G	4.340e^-5	0.982	NON_SYNONYMOUS_CODING CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11925883	X_11925883_SNP [dm3] X_12031850_SNP [dm6]	C	G	4.451e^-5	0.982	UPSTREAM Cyp311a1 & 1 other INTERGENIC
X	12139773	X_12139773_DEL [dm3] X_12245740_DEL [dm6]	AGTGGAAGAAATGAAAGGAG...	G	4.492e^-5	0.982	INTRON Ten-a
2L	7189772	2L_7189772_DEL [dm3] 2L_7189772_DEL [dm6]	TCGGAT	T	4.759e^-5	0.982	UTR_5_PRIME CG4496 DOWNSTREAM CG4497
3R	13531456	3R_13531456_SNP [dm3] 3R_17705734_SNP [dm6]	T	C	4.783e^-5	0.982	INTRON osa
3R	16713554	3R_16713554_SNP [dm3] 3R_20887832_SNP [dm6]	G	C	4.822e^-5	0.982	INTERGENIC
3R	16713701	3R_16713701_SNP [dm3] 3R_20887979_SNP [dm6]	C	T	4.822e^-5	0.982	INTERGENIC
X	15520967	X_15520967_SNP [dm3] X_15626934_SNP [dm6]	C	T	4.854e^-5	0.982	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_twi
3L	10404933	3L_10404933_SNP [dm3] 3L_10411833_SNP [dm6]	T	A	5.134e^-5	0.982	UPSTREAM CR44543 & 1 other DOWNSTREAM CR43990 INTERGENIC
3R	13786655	3R_13786655_SNP [dm3] 3R_17960933_SNP [dm6]	C	T	5.288e^-5	0.982	INTRON cpo
X	5865086	X_5865086_SNP [dm3] X_5971053_SNP [dm6]	C	G	5.293e^-5	0.982	INTRON Grip
3R	9459446	3R_9459446_SNP [dm3] 3R_13633724_SNP [dm6]	A	G	5.388e^-5	0.982	SYNONYMOUS_CODING CG10841
3L	9818108	3L_9818108_SNP [dm3] 3L_9825008_SNP [dm6]	C	G	5.393e^-5	0.982	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
3L	10823250	3L_10823250_SNP [dm3] 3L_10830150_SNP [dm6]	A	T	5.447e^-5	0.982	INTERGENIC
3L	9472255	3L_9472255_SNP [dm3] 3L_9479155_SNP [dm6]	T	A	5.452e^-5	0.982	SYNONYMOUS_CODING Jarid2
3L	9472264	3L_9472264_SNP [dm3] 3L_9479164_SNP [dm6]	T	C	5.452e^-5	0.982	SYNONYMOUS_CODING Jarid2
3L	9472268	3L_9472268_SNP [dm3] 3L_9479168_SNP [dm6]	A	G	5.452e^-5	0.982	NON_SYNONYMOUS_CODING Jarid2
3L	9472271	3L_9472271_SNP [dm3] 3L_9479171_SNP [dm6]	A	G	5.452e^-5	0.982	NON_SYNONYMOUS_CODING Jarid2
3L	9472277	3L_9472277_SNP [dm3] 3L_9479177_SNP [dm6]	G	C	5.452e^-5	0.982	NON_SYNONYMOUS_CODING Jarid2
3L	9472297	3L_9472297_SNP [dm3] 3L_9479197_SNP [dm6]	C	T	5.452e^-5	0.982	SYNONYMOUS_CODING Jarid2
2R	17091336	2R_17091336_SNP [dm3] 2R_21203831_SNP [dm6]	C	T	5.772e^-5	0.982	INTRON Glycogenin & 1 other
3R	9459467	3R_9459467_SNP [dm3] 3R_13633745_SNP [dm6]	C	G	5.838e^-5	0.982	INTRON CG10841
3R	23293164	3R_23293164_SNP [dm3] 3R_27467442_SNP [dm6]	T	C	5.908e^-5	0.982	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3L	6960431	3L_6960431_SNP [dm3] 3L_6967331_SNP [dm6]	A	G	6.089e^-5	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960436	3L_6960436_SNP [dm3] 3L_6967336_SNP [dm6]	A	T	6.089e^-5	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960445	3L_6960445_SNP [dm3] 3L_6967345_SNP [dm6]	A	G	6.089e^-5	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19562150	2R_19562150_SNP [dm3] 2R_23674627_SNP [dm6]	G	A	6.107e^-5	0.982	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9839853	2L_9839853_SNP [dm3] 2L_9839853_SNP [dm6]	G	A	6.134e^-5	0.982	INTRON nAChRalpha6
2R	14372117	2R_14372117_SNP [dm3] 2R_18484612_SNP [dm6]	G	T	6.162e^-5	0.982	INTRON CG30116
2R	17643715	2R_17643715_SNP [dm3] 2R_21756210_SNP [dm6]	T	C	6.176e^-5	0.982	INTERGENIC
2R	17643718	2R_17643718_SNP [dm3] 2R_21756213_SNP [dm6]	A	T	6.176e^-5	0.982	INTERGENIC
X	16920439	X_16920439_SNP [dm3] X_17026406_SNP [dm6]	A	G	6.214e^-5	0.982	INTRON CG45002
2L	6472292	2L_6472292_SNP [dm3] 2L_6472292_SNP [dm6]	C	T	6.300e^-5	0.982	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10400789	2R_10400789_SNP [dm3] 2R_14513284_SNP [dm6]	T	A	6.390e^-5	0.982	UPSTREAM CG30197 DOWNSTREAM Asx INTRON Cpr51A
2R	10400808	2R_10400808_SNP [dm3] 2R_14513303_SNP [dm6]	C	T	6.390e^-5	0.982	UPSTREAM CG30197 DOWNSTREAM Asx INTRON Cpr51A
3R	18932518	3R_18932518_SNP [dm3] 3R_23106796_SNP [dm6]	G	A	6.457e^-5	0.982	INTRON CG13830
3R	24976436	3R_24976436_SNP [dm3] 3R_29150714_SNP [dm6]	C	G	6.481e^-5	0.982	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	11945477	2L_11945477_SNP [dm3] 2L_11945477_SNP [dm6]	G	A	6.887e^-5	0.982	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11945507	2L_11945507_SNP [dm3] 2L_11945507_SNP [dm6]	G	A	6.887e^-5	0.982	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11945591	2L_11945591_SNP [dm3] 2L_11945591_SNP [dm6]	C	A	6.887e^-5	0.982	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11947420	2L_11947420_DEL [dm3] 2L_11947420_DEL [dm6]	TCT	T	6.887e^-5	0.982	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2L	10479853	2L_10479853_SNP [dm3] 2L_10479853_SNP [dm6]	T	A	6.959e^-5	0.982	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2L	10479854	2L_10479854_SNP [dm3] 2L_10479854_SNP [dm6]	A	G	6.959e^-5	0.982	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3L	20196503	3L_20196503_SNP [dm3] 3L_20203403_SNP [dm6]	C	A	6.965e^-5	0.982	SYNONYMOUS_CODING CG7298 DOWNSTREAM CG7290	TF binding site mE1_TFBS_cad
3L	16424792	3L_16424792_SNP [dm3] 3L_16431692_SNP [dm6]	T	G	7.084e^-5	0.982	INTRON CG33158 & 1 other
3L	5610704	3L_5610704_DEL [dm3] 3L_5617604_DEL [dm6]	AA	A	7.114e^-5	0.982	INTERGENIC
3L	16702678	3L_16702678_SNP [dm3] 3L_16709578_SNP [dm6]	C	A	7.125e^-5	0.982	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	14718121	3R_14718121_SNP [dm3] 3R_18892399_SNP [dm6]	G	A	7.177e^-5	0.982	INTERGENIC
3L	6016790	3L_6016790_DEL [dm3] 3L_6023690_DEL [dm6]	TGTGTTATGTTT...	T	7.199e^-5	0.982	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl
2L	10525923	2L_10525923_SNP [dm3] 2L_10525923_SNP [dm6]	C	T	7.237e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12329552	2R_12329552_SNP [dm3] 2R_16442047_SNP [dm6]	T	C	7.266e^-5	0.982	INTERGENIC
2R	13136282	2R_13136282_SNP [dm3] 2R_17248777_SNP [dm6]	T	A	7.266e^-5	0.982	INTRON mbl
3L	6016813	3L_6016813_SNP [dm3] 3L_6023713_SNP [dm6]	C	T	7.266e^-5	0.982	INTRON PVRAP
3L	6016822	3L_6016822_SNP [dm3] 3L_6023722_SNP [dm6]	T	A	7.266e^-5	0.982	INTRON PVRAP
X	18966536	X_18966536_SNP [dm3] X_19072503_SNP [dm6]	C	A	7.266e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21743319	2L_21743319_SNP [dm3] 2L_21743319_SNP [dm6]	T	A	7.315e^-5	0.982	INTRON step	transposable element FlyBase
3L	18203079	3L_18203079_SNP [dm3] 3L_18209979_SNP [dm6]	T	G	7.388e^-5	0.982	INTERGENIC
2L	19278818	2L_19278818_INS [dm3] 2L_19278818_INS [dm6]	T	TT	7.423e^-5	0.982	INTERGENIC
3L	10404923	3L_10404923_SNP [dm3] 3L_10411823_SNP [dm6]	T	C	7.568e^-5	0.982	UPSTREAM CR44543 & 1 other DOWNSTREAM CR43990 INTERGENIC
3L	18141688	3L_18141688_INS [dm3] 3L_18148588_INS [dm6]	A	AA	7.596e^-5	0.982	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18069143	2R_18069143_SNP [dm3] 2R_22181638_SNP [dm6]	G	T	7.614e^-5	0.982	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	20175043	3L_20175043_SNP [dm3] 3L_20181943_SNP [dm6]	C	G	7.647e^-5	0.982	INTRON CG42674
3R	25547286	3R_25547286_MNP [dm3] 3R_29721564_MNP [dm6]	GAA	TTT	7.709e^-5	0.982	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	9818060	3L_9818060_SNP [dm3] 3L_9824960_SNP [dm6]	G	A	7.717e^-5	0.982	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
3L	10403743	3L_10403743_SNP [dm3] 3L_10410643_SNP [dm6]	A	T	7.754e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9041544	2L_9041544_SNP [dm3] 2L_9041544_SNP [dm6]	C	T	7.764e^-5	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10841347	2R_10841347_SNP [dm3] 2R_14953842_SNP [dm6]	A	T	7.982e^-5	0.982	INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10403795	3L_10403795_DEL [dm3] 3L_10410695_DEL [dm6]	CT	C	7.989e^-5	0.982	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10169265	2L_10169265_SNP [dm3] 2L_10169265_SNP [dm6]	C	T	7.990e^-5	0.982	INTRON CG44153
3L	20198455	3L_20198455_SNP [dm3] 3L_20205355_SNP [dm6]	T	A	8.035e^-5	0.982	NON_SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16805004	X_16805004_SNP [dm3] X_16910971_SNP [dm6]	A	G	8.189e^-5	0.982	INTRON CR44754
X	6640218	X_6640218_SNP [dm3] X_6746185_SNP [dm6]	C	T	8.195e^-5	0.982	DOWNSTREAM CR44964 EXON CR44895
2R	12490699	2R_12490699_SNP [dm3] 2R_16603194_SNP [dm6]	A	T	8.368e^-5	0.982	INTRON CG8303
3L	12397102	3L_12397102_SNP [dm3] 3L_12404002_SNP [dm6]	G	A	8.386e^-5	0.982	UTR_3_PRIME CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2202533	2L_2202533_SNP [dm3] 2L_2202533_SNP [dm6]	T	A	8.514e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14433815	2L_14433815_SNP [dm3] 2L_14433815_SNP [dm6]	G	T	8.587e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6256781	2R_6256781_SNP [dm3] 2R_10369276_SNP [dm6]	G	A	8.604e^-5	0.982	INTRON CG42732	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16919262	X_16919262_SNP [dm3] X_17025229_SNP [dm6]	C	T	8.783e^-5	0.982	INTRON CG45002
3R	13420089	3R_13420089_SNP [dm3] 3R_17594367_SNP [dm6]	T	C	8.815e^-5	0.982	UPSTREAM CG7587 & 1 other INTERGENIC
3L	4958307	3L_4958307_SNP [dm3] 3L_4958307_SNP [dm6]	T	G	8.944e^-5	0.982	INTRON Con
3R	26280684	3R_26280684_SNP [dm3] 3R_30454962_SNP [dm6]	C	A	9.074e^-5	0.982	INTRON aralar1
2R	15587315	2R_15587315_SNP [dm3] 2R_19699810_SNP [dm6]	C	G	9.093e^-5	0.982	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3R	24521871	3R_24521871_SNP [dm3] 3R_28696149_SNP [dm6]	A	G	9.238e^-5	0.982	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6579268	2R_6579268_SNP [dm3] 2R_10691763_SNP [dm6]	C	T	9.337e^-5	0.982	INTRON stan	enhancer mE1_CBP_Enhancers
X	8622412	X_8622412_SNP [dm3] X_8728379_SNP [dm6]	G	A	9.380e^-5	0.982	INTERGENIC
2R	11038704	2R_11038704_SNP [dm3] 2R_15151199_SNP [dm6]	T	C	9.398e^-5	0.982	INTERGENIC
X	7068083	X_7068083_SNP [dm3] X_7174050_SNP [dm6]	A	G	9.422e^-5	0.982	INTRON CG9650 & 1 other
3L	16190470	3L_16190470_SNP [dm3] 3L_16197370_SNP [dm6]	T	A	9.456e^-5	0.982	UPSTREAM CG33687 & 1 other INTERGENIC
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	9.827e^-5	0.982	INTRON CG8910
2R	19359578	2R_19359578_SNP [dm3] 2R_23472055_SNP [dm6]	A	T	9.836e^-5	0.982	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359599	2R_19359599_SNP [dm3] 2R_23472076_SNP [dm6]	T	C	9.836e^-5	0.982	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359601	2R_19359601_SNP [dm3] 2R_23472078_SNP [dm6]	A	T	9.836e^-5	0.982	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359606	2R_19359606_SNP [dm3] 2R_23472083_SNP [dm6]	T	A	9.836e^-5	0.982	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359617	2R_19359617_SNP [dm3] 2R_23472094_SNP [dm6]	G	T	9.836e^-5	0.982	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3R	25961552	3R_25961552_SNP [dm3] 3R_30135830_SNP [dm6]	T	C	9.850e^-5	0.982	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13322042	X_13322042_INS [dm3] X_13428009_INS [dm6]	T	TCTTCTCGGCAAT...	9.934e^-5	0.982	INTERGENIC
2R	13738800	2R_13738800_SNP [dm3] 2R_17851295_SNP [dm6]	A	G	1.016e^-4	0.982	SYNONYMOUS_CODING olf186-F UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8826554	2R_8826554_SNP [dm3] 2R_12939049_SNP [dm6]	T	A	1.034e^-4	0.982	UPSTREAM CG30487 INTRON Sans	TF binding site mE1_TFBS_chinmo
3L	6961216	3L_6961216_SNP [dm3] 3L_6968116_SNP [dm6]	G	A	1.044e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961241	3L_6961241_SNP [dm3] 3L_6968141_SNP [dm6]	C	T	1.044e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961246	3L_6961246_DEL [dm3] 3L_6968146_DEL [dm6]	GGG	G	1.044e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961302	3L_6961302_SNP [dm3] 3L_6968202_SNP [dm6]	C	T	1.044e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961308	3L_6961308_SNP [dm3] 3L_6968208_SNP [dm6]	G	T	1.044e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961322	3L_6961322_SNP [dm3] 3L_6968222_SNP [dm6]	T	C	1.044e^-4	0.982	NON_SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
3L	6963832	3L_6963832_SNP [dm3] 3L_6970732_SNP [dm6]	T	C	1.044e^-4	0.982	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6963930	3L_6963930_SNP [dm3] 3L_6970830_SNP [dm6]	T	C	1.044e^-4	0.982	DOWNSTREAM CG10063 INTRON CG9953	TF binding site mE1_TFBS_sens
2R	18069621	2R_18069621_SNP [dm3] 2R_22182116_SNP [dm6]	C	T	1.050e^-4	0.982	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	18070432	2R_18070432_SNP [dm3] 2R_22182927_SNP [dm6]	T	C	1.050e^-4	0.982	UPSTREAM MED16 & 1 other DOWNSTREAM CG11275 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	9686405	2L_9686405_SNP [dm3] 2L_9686405_SNP [dm6]	G	A	1.054e^-4	0.982	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13014335	2R_13014335_SNP [dm3] 2R_17126830_SNP [dm6]	G	A	1.068e^-4	0.982	SYNONYMOUS_CODING CG15605 DOWNSTREAM Amy-d
X	7068018	X_7068018_SNP [dm3] X_7173985_SNP [dm6]	A	G	1.083e^-4	0.982	INTRON CG9650 & 1 other
X	16845336	X_16845336_SNP [dm3] X_16951303_SNP [dm6]	A	G	1.084e^-4	0.982	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16848260	X_16848260_SNP [dm3] X_16954227_SNP [dm6]	A	G	1.084e^-4	0.982	INTRON RhoGAP15B
X	16857414	X_16857414_SNP [dm3] X_16963381_SNP [dm6]	T	A	1.084e^-4	0.982	INTRON CG9086	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20198917	3L_20198917_SNP [dm3] 3L_20205817_SNP [dm6]	C	G	1.094e^-4	0.982	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16805278	X_16805278_SNP [dm3] X_16911245_SNP [dm6]	G	A	1.113e^-4	0.982	INTRON CR44754
3R	14556875	3R_14556875_SNP [dm3] 3R_18731153_SNP [dm6]	G	A	1.115e^-4	0.982	UTR_3_PRIME Cha
X	2750088	X_2750088_SNP [dm3] X_2856055_SNP [dm6]	C	G	1.118e^-4	0.982	INTRON kirre
2L	18624259	2L_18624259_SNP [dm3] 2L_18624259_SNP [dm6]	G	T	1.127e^-4	0.982	INTRON MESR3
3R	26280695	3R_26280695_SNP [dm3] 3R_30454973_SNP [dm6]	C	T	1.132e^-4	0.982	INTRON aralar1
2R	11853458	2R_11853458_SNP [dm3] 2R_15965953_SNP [dm6]	C	T	1.145e^-4	0.982	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24521814	3R_24521814_INS [dm3] 3R_28696092_INS [dm6]	G	GCCTTTTTATG...	1.147e^-4	0.982	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15265420	3L_15265420_SNP [dm3] 3L_15272320_SNP [dm6]	A	G	1.148e^-4	0.982	INTERGENIC
2L	1321853	2L_1321853_INS [dm3] 2L_1321853_INS [dm6]	T	TA	1.148e^-4	0.982	INTERGENIC
3L	10020533	3L_10020533_SNP [dm3] 3L_10027433_SNP [dm6]	T	C	1.152e^-4	0.982	INTRON dpr6
X	10223547	X_10223547_SNP [dm3] X_10329514_SNP [dm6]	T	C	1.156e^-4	0.982	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other
X	10224427	X_10224427_SNP [dm3] X_10330394_SNP [dm6]	C	G	1.156e^-4	0.982	NON_SYNONYMOUS_CODING CG15306 UPSTREAM Gip
3L	16741610	3L_16741610_SNP [dm3] 3L_16748510_SNP [dm6]	T	C	1.168e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17795824	2R_17795824_SNP [dm3] 2R_21908319_SNP [dm6]	C	A	1.173e^-4	0.982	INTRON Fili	TF binding site mE1_TFBS_sens
2R	16864365	2R_16864365_SNP [dm3] 2R_20976860_SNP [dm6]	T	G	1.183e^-4	0.982	UTR_3_PRIME CG34115 UPSTREAM CG9344 DOWNSTREAM CG15650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2595104	2L_2595104_SNP [dm3] 2L_2595104_SNP [dm6]	C	A	1.184e^-4	0.982	INTERGENIC
2L	5961031	2L_5961031_SNP [dm3] 2L_5961031_SNP [dm6]	A	C	1.202e^-4	0.982	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26280666	3R_26280666_SNP [dm3] 3R_30454944_SNP [dm6]	G	A	1.207e^-4	0.982	INTRON aralar1
3R	26280683	3R_26280683_SNP [dm3] 3R_30454961_SNP [dm6]	C	G	1.207e^-4	0.982	INTRON aralar1
3L	6965399	3L_6965399_SNP [dm3] 3L_6972299_SNP [dm6]	T	C	1.219e^-4	0.982	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
X	5457645	X_5457645_SNP [dm3] X_5563612_SNP [dm6]	C	T	1.223e^-4	0.982	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	7500490	X_7500490_INS [dm3] X_7606457_INS [dm6]	T	TGGAAGTT	1.227e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12234781	2L_12234781_SNP [dm3] 2L_12234781_SNP [dm6]	C	T	1.229e^-4	0.982	INTRON aret
3R	14180623	3R_14180623_SNP [dm3] 3R_18354901_SNP [dm6]	T	C	1.233e^-4	0.982	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	4570526	X_4570526_SNP [dm3] X_4676493_SNP [dm6]	T	A	1.234e^-4	0.982	UTR_5_PRIME rap
3L	9818036	3L_9818036_SNP [dm3] 3L_9824936_SNP [dm6]	T	C	1.248e^-4	0.982	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
X	10985021	X_10985021_SNP [dm3] X_11090988_SNP [dm6]	G	C	1.254e^-4	0.982	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo
X	10985033	X_10985033_SNP [dm3] X_11091000_SNP [dm6]	C	G	1.254e^-4	0.982	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo
X	10985240	X_10985240_SNP [dm3] X_11091207_SNP [dm6]	A	T	1.254e^-4	0.982	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9236179	2R_9236179_SNP [dm3] 2R_13348674_SNP [dm6]	C	T	1.261e^-4	0.982	INTRON CR44206
3R	26280028	3R_26280028_SNP [dm3] 3R_30454306_SNP [dm6]	C	A	1.271e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3L	16702664	3L_16702664_SNP [dm3] 3L_16709564_SNP [dm6]	T	G	1.275e^-4	0.982	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	13216695	3L_13216695_SNP [dm3] 3L_13223595_SNP [dm6]	A	G	1.280e^-4	0.982	INTERGENIC
3L	6961226	3L_6961226_INS [dm3] 3L_6968126_INS [dm6]	A	AA	1.282e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
3R	17015063	3R_17015063_SNP [dm3] 3R_21189341_SNP [dm6]	G	T	1.284e^-4	0.982	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14896991	3L_14896991_SNP [dm3] 3L_14903891_SNP [dm6]	A	G	1.293e^-4	0.982	UTR_5_PRIME DCX-EMAP
3L	6960453	3L_6960453_SNP [dm3] 3L_6967353_SNP [dm6]	C	T	1.306e^-4	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18068493	2R_18068493_SNP [dm3] 2R_22180988_SNP [dm6]	C	T	1.315e^-4	0.982	INTRON CG11170 & 1 other
3L	6961297	3L_6961297_SNP [dm3] 3L_6968197_SNP [dm6]	T	C	1.327e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
2R	18069647	2R_18069647_SNP [dm3] 2R_22182142_SNP [dm6]	G	T	1.331e^-4	0.982	NON_SYNONYMOUS_CODING CG11275 UPSTREAM MED16 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	17104990	2R_17104990_SNP [dm3] 2R_21217485_SNP [dm6]	C	G	1.333e^-4	0.982	DOWNSTREAM ASPP INTRON CG15661
2L	10479871	2L_10479871_SNP [dm3] 2L_10479871_SNP [dm6]	A	T	1.348e^-4	0.982	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2L	10479882	2L_10479882_SNP [dm3] 2L_10479882_SNP [dm6]	T	A	1.348e^-4	0.982	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2R	19472356	2R_19472356_SNP [dm3] 2R_23584833_SNP [dm6]	T	C	1.350e^-4	0.982	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9833362	2L_9833362_SNP [dm3] 2L_9833362_SNP [dm6]	T	A	1.355e^-4	0.982	INTRON nAChRalpha6
3L	16702959	3L_16702959_DEL [dm3] 3L_16709859_DEL [dm6]	GATA	G	1.382e^-4	0.982	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5423539	3L_5423539_SNP [dm3] 3L_5430439_SNP [dm6]	T	G	1.426e^-4	0.982	INTRON CG34391
2R	17713458	2R_17713458_SNP [dm3] 2R_21825953_SNP [dm6]	G	C	1.435e^-4	0.982	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14059630	X_14059630_SNP [dm3] X_14165597_SNP [dm6]	A	T	1.444e^-4	0.982	INTERGENIC
X	14059650	X_14059650_INS [dm3] X_14165617_INS [dm6]	G	GC	1.444e^-4	0.982	INTERGENIC
2L	18049802	2L_18049802_SNP [dm3] 2L_18049802_SNP [dm6]	T	A	1.447e^-4	0.982	INTRON rdo
X	17908232	X_17908232_SNP [dm3] X_18014199_SNP [dm6]	G	A	1.473e^-4	0.982	INTRON Sh
3L	8919505	3L_8919505_SNP [dm3] 3L_8926405_SNP [dm6]	T	C	1.477e^-4	0.982	INTRON Tsp66E
X	2444514	X_2444514_SNP [dm3] X_2550481_SNP [dm6]	T	A	1.511e^-4	0.982	INTERGENIC
X	2445213	X_2445213_SNP [dm3] X_2551180_SNP [dm6]	A	G	1.511e^-4	0.982	INTERGENIC
X	2447247	X_2447247_SNP [dm3] X_2553214_SNP [dm6]	G	A	1.511e^-4	0.982	UPSTREAM Pdfr INTRON Pdfr
X	2447249	X_2447249_SNP [dm3] X_2553216_SNP [dm6]	T	G	1.511e^-4	0.982	UPSTREAM Pdfr INTRON Pdfr
X	2447361	X_2447361_SNP [dm3] X_2553328_SNP [dm6]	T	C	1.511e^-4	0.982	UPSTREAM Pdfr INTRON Pdfr
X	2447449	X_2447449_SNP [dm3] X_2553416_SNP [dm6]	G	T	1.511e^-4	0.982	UPSTREAM Pdfr INTRON Pdfr
X	2448285	X_2448285_DEL [dm3] X_2554252_DEL [dm6]	TTCCAACGCGAGTTTGAAG...	A	1.511e^-4	0.982	SPLICE_SITE_ACCEPTOR Pdfr SPLICE_SITE_REGION Pdfr UTR_5_PRIME Pdfr INTRON Pdfr
X	2448306	X_2448306_SNP [dm3] X_2554273_SNP [dm6]	A	T	1.511e^-4	0.982	UTR_5_PRIME Pdfr
X	2448318	X_2448318_SNP [dm3] X_2554285_SNP [dm6]	A	T	1.511e^-4	0.982	UTR_5_PRIME Pdfr
X	2448795	X_2448795_INS [dm3] X_2554762_INS [dm6]	C	CAACCATC	1.511e^-4	0.982	INTRON Pdfr
3L	2572386	3L_2572386_SNP [dm3] 3L_2572386_SNP [dm6]	C	T	1.512e^-4	0.982	INTRON msn
2L	10479873	2L_10479873_SNP [dm3] 2L_10479873_SNP [dm6]	C	A	1.531e^-4	0.982	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3L	5825091	3L_5825091_DEL [dm3] 3L_5831991_DEL [dm6]	GCTGG	G	1.540e^-4	0.982	INTRON vn
X	16920170	X_16920170_DEL [dm3] X_17026137_DEL [dm6]	TCTGTAA	T	1.570e^-4	0.982	INTRON CG45002
2L	20660690	2L_20660690_SNP [dm3] 2L_20660690_SNP [dm6]	C	T	1.582e^-4	0.982	SYNONYMOUS_CODING CG31678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11739979	3R_11739979_SNP [dm3] 3R_15914257_SNP [dm6]	T	A	1.588e^-4	0.982	INTRON CG45105	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	24520154	3R_24520154_SNP [dm3] 3R_28694432_SNP [dm6]	A	C	1.588e^-4	0.982	INTRON CG9990	TF binding site mE1_TFBS_cad
3R	24521867	3R_24521867_SNP [dm3] 3R_28696145_SNP [dm6]	C	T	1.588e^-4	0.982	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24521879	3R_24521879_SNP [dm3] 3R_28696157_SNP [dm6]	A	T	1.588e^-4	0.982	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10883818	3R_10883818_SNP [dm3] 3R_15058096_SNP [dm6]	G	A	1.589e^-4	0.982	INTRON dpr9
2R	15400711	2R_15400711_SNP [dm3] 2R_19513206_SNP [dm6]	T	C	1.591e^-4	0.982	SYNONYMOUS_CODING Ir56d
X	16859710	X_16859710_SNP [dm3] X_16965677_SNP [dm6]	T	C	1.611e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3R	6639108	3R_6639108_SNP [dm3] 3R_10813386_SNP [dm6]	T	G	1.630e^-4	0.982	DOWNSTREAM CG14693 INTRON CG14693
2L	15547125	2L_15547125_SNP [dm3] 2L_15547125_SNP [dm6]	T	C	1.642e^-4	0.982	UPSTREAM Skadu INTERGENIC
3R	18923054	3R_18923054_SNP [dm3] 3R_23097332_SNP [dm6]	G	C	1.647e^-4	0.982	UPSTREAM CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8919554	3L_8919554_SNP [dm3] 3L_8926454_SNP [dm6]	C	T	1.648e^-4	0.982	INTRON Tsp66E
2R	11976858	2R_11976858_SNP [dm3] 2R_16089353_SNP [dm6]	C	T	1.649e^-4	0.982	INTRON Dg
2L	11947453	2L_11947453_SNP [dm3] 2L_11947453_SNP [dm6]	T	C	1.654e^-4	0.982	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	13747688	2R_13747688_SNP [dm3] 2R_17860183_SNP [dm6]	A	G	1.655e^-4	0.982	UTR_3_PRIME olf186-F UPSTREAM CG14490
2L	6121880	2L_6121880_SNP [dm3] 2L_6121880_SNP [dm6]	T	C	1.675e^-4	0.982	SYNONYMOUS_CODING stai
3L	19014556	3L_19014556_SNP [dm3] 3L_19021456_SNP [dm6]	C	G	1.681e^-4	0.982	INTRON nkd
3L	1526037	3L_1526037_SNP [dm3] 3L_1526037_SNP [dm6]	C	A	1.681e^-4	0.982	INTRON CG12090
2L	19365252	2L_19365252_SNP [dm3] 2L_19365252_SNP [dm6]	A	T	1.689e^-4	0.982	SYNONYMOUS_CODING CG13086
2R	9233125	2R_9233125_SNP [dm3] 2R_13345620_SNP [dm6]	T	G	1.690e^-4	0.982	INTRON CR44206
3R	8708644	3R_8708644_INS [dm3] 3R_12882922_INS [dm6]	C	CA	1.715e^-4	0.982	INTERGENIC
3R	8708648	3R_8708648_DEL [dm3] 3R_12882926_DEL [dm6]	AT	A	1.715e^-4	0.982	INTERGENIC
3R	26279972	3R_26279972_SNP [dm3] 3R_30454250_SNP [dm6]	G	A	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3R	26280009	3R_26280009_DEL [dm3] 3R_30454287_DEL [dm6]	CTCCA	T	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3R	26280018	3R_26280018_MNP [dm3] 3R_30454296_MNP [dm6]	ATCGA	TATAG	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3R	26280029	3R_26280029_DEL [dm3] 3R_30454307_DEL [dm6]	TGTA	T	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3R	26280035	3R_26280035_DEL [dm3] 3R_30454313_DEL [dm6]	TCATAC	T	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3R	26280048	3R_26280048_SNP [dm3] 3R_30454326_SNP [dm6]	T	G	1.717e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
3L	6961301	3L_6961301_SNP [dm3] 3L_6968201_SNP [dm6]	C	T	1.718e^-4	0.982	UTR_3_PRIME Mis12 UPSTREAM CG10064
2R	17309771	2R_17309771_SNP [dm3] 2R_21422266_SNP [dm6]	C	G	1.719e^-4	0.982	INTRON Sdc
2R	8924112	2R_8924112_SNP [dm3] 2R_13036607_SNP [dm6]	C	T	1.721e^-4	0.982	INTERGENIC
2L	21862129	2L_21862129_SNP [dm3] 2L_21862129_SNP [dm6]	C	T	1.722e^-4	0.982	INTRON CR44917
3L	15246817	3L_15246817_SNP [dm3] 3L_15253717_SNP [dm6]	A	T	1.724e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12875556	3L_12875556_INS [dm3] 3L_12882456_INS [dm6]	T	TT	1.729e^-4	0.982	INTERGENIC
2R	19078414	2R_19078414_SNP [dm3] 2R_23190891_SNP [dm6]	C	G	1.731e^-4	0.982	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4022830	2L_4022830_SNP [dm3] 2L_4022830_SNP [dm6]	C	T	1.752e^-4	0.982	INTERGENIC
3R	26668061	3R_26668061_SNP [dm3] 3R_30842339_SNP [dm6]	A	G	1.765e^-4	0.982	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26668065	3R_26668065_SNP [dm3] 3R_30842343_SNP [dm6]	G	A	1.765e^-4	0.982	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12158262	2L_12158262_SNP [dm3] 2L_12158262_SNP [dm6]	C	G	1.771e^-4	0.982	INTRON CG31760
2L	20374606	2L_20374606_SNP [dm3] 2L_20374606_SNP [dm6]	G	A	1.787e^-4	0.982	UPSTREAM Ugt37a1 INTERGENIC
X	8867369	X_8867369_SNP [dm3] X_8973336_SNP [dm6]	T	C	1.793e^-4	0.982	SYNONYMOUS_CODING CG10962 INTRON rdgA EXON CR43836
3L	20175045	3L_20175045_SNP [dm3] 3L_20181945_SNP [dm6]	G	T	1.797e^-4	0.982	INTRON CG42674
2R	576427	2R_576427_SNP [dm3] 2R_4688922_SNP [dm6]	G	C	1.803e^-4	0.982	INTERGENIC	transposable element FlyBase
3R	14180608	3R_14180608_SNP [dm3] 3R_18354886_SNP [dm6]	T	C	1.816e^-4	0.982	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18832627	2R_18832627_DEL [dm3] 2R_22945104_DEL [dm6]	GCGCGATAGTCAATAAATGT...	G	1.819e^-4	0.982	UTR_3_PRIME CG42694 DOWNSTREAM CG42694 INTRAGENIC CG42694 INTERGENIC	TF binding site mE1_TFBS_sens
2L	20598638	2L_20598638_SNP [dm3] 2L_20598638_SNP [dm6]	T	C	1.849e^-4	0.982	INTRON CR44909
3R	24522280	3R_24522280_SNP [dm3] 3R_28696558_SNP [dm6]	G	T	1.853e^-4	0.982	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16485050	3L_16485050_SNP [dm3] 3L_16491950_SNP [dm6]	T	C	1.869e^-4	0.982	UTR_3_PRIME CG42514 & 1 other INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15863712	2R_15863712_SNP [dm3] 2R_19976207_SNP [dm6]	T	A	1.869e^-4	0.982	INTERGENIC
3R	12019968	3R_12019968_SNP [dm3] 3R_16194246_SNP [dm6]	T	A	1.880e^-4	0.982	UPSTREAM sra INTRON sra
3L	1323720	3L_1323720_SNP [dm3] 3L_1323720_SNP [dm6]	G	C	1.895e^-4	0.982	UPSTREAM CG9184 & 1 other INTRON Myo61F & 1 other
X	2446427	X_2446427_DEL [dm3] X_2552394_DEL [dm6]	AAACA	A	1.897e^-4	0.982	INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16699607	2R_16699607_SNP [dm3] 2R_20812102_SNP [dm6]	C	A	1.905e^-4	0.982	INTERGENIC
2L	11950732	2L_11950732_SNP [dm3] 2L_11950732_SNP [dm6]	A	G	1.918e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5260522	3L_5260522_SNP [dm3] 3L_5267422_SNP [dm6]	G	A	1.919e^-4	0.982	INTRON shep
2L	14433551	2L_14433551_SNP [dm3] 2L_14433551_SNP [dm6]	C	T	1.927e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1664495	2L_1664495_SNP [dm3] 2L_1664495_SNP [dm6]	G	C	1.933e^-4	0.982	INTRON chinmo
2L	2597645	2L_2597645_SNP [dm3] 2L_2597645_SNP [dm6]	T	A	1.941e^-4	0.982	DOWNSTREAM CR44790 INTERGENIC
3R	23117670	3R_23117670_SNP [dm3] 3R_27291948_SNP [dm6]	G	A	1.943e^-4	0.982	SYNONYMOUS_CODING CG3348 DOWNSTREAM Hmu
3R	14112222	3R_14112222_SNP [dm3] 3R_18286500_SNP [dm6]	C	G	1.956e^-4	0.982	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
3R	14112240	3R_14112240_SNP [dm3] 3R_18286518_SNP [dm6]	G	A	1.956e^-4	0.982	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
2L	1964289	2L_1964289_SNP [dm3] 2L_1964289_SNP [dm6]	C	A	1.979e^-4	0.982	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	18901998	2L_18901998_SNP [dm3] 2L_18901998_SNP [dm6]	C	G	1.979e^-4	0.982	INTERGENIC
3L	5892956	3L_5892956_SNP [dm3] 3L_5899856_SNP [dm6]	T	A	1.992e^-4	0.982	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6639101	3R_6639101_SNP [dm3] 3R_10813379_SNP [dm6]	G	T	1.998e^-4	0.982	DOWNSTREAM CG14693 INTRON CG14693
3R	24529699	3R_24529699_SNP [dm3] 3R_28703977_SNP [dm6]	A	C	2.012e^-4	0.982	INTRON htt
2R	18665569	2R_18665569_SNP [dm3] 2R_22778064_SNP [dm6]	A	T	2.028e^-4	0.982	INTRON CG42260
3L	5423552	3L_5423552_SNP [dm3] 3L_5430452_SNP [dm6]	T	C	2.032e^-4	0.982	INTRON CG34391
3L	5423546	3L_5423546_SNP [dm3] 3L_5430446_SNP [dm6]	A	T	2.035e^-4	0.982	INTRON CG34391
3R	24529698	3R_24529698_SNP [dm3] 3R_28703976_SNP [dm6]	A	G	2.044e^-4	0.982	INTRON htt
3R	24529707	3R_24529707_SNP [dm3] 3R_28703985_SNP [dm6]	A	G	2.044e^-4	0.982	INTRON htt
3R	24529708	3R_24529708_SNP [dm3] 3R_28703986_SNP [dm6]	C	G	2.044e^-4	0.982	INTRON htt
3R	24529712	3R_24529712_SNP [dm3] 3R_28703990_SNP [dm6]	C	T	2.044e^-4	0.982	INTRON htt
3R	24529759	3R_24529759_SNP [dm3] 3R_28704037_SNP [dm6]	T	A	2.044e^-4	0.982	INTRON htt
3R	10680218	3R_10680218_SNP [dm3] 3R_14854496_SNP [dm6]	G	A	2.063e^-4	0.982	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18422041	2R_18422041_SNP [dm3] 2R_22534536_SNP [dm6]	G	A	2.065e^-4	0.982	INTRON px
X	7071763	X_7071763_SNP [dm3] X_7177730_SNP [dm6]	C	G	2.072e^-4	0.982	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo
2L	12612506	2L_12612506_SNP [dm3] 2L_12612506_SNP [dm6]	T	G	2.085e^-4	0.982	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	3872249	X_3872249_SNP [dm3] X_3978216_SNP [dm6]	T	A	2.091e^-4	0.982	INTERGENIC
3R	13651030	3R_13651030_SNP [dm3] 3R_17825308_SNP [dm6]	G	C	2.114e^-4	0.982	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	2912365	2R_2912365_SNP [dm3] 2R_7024860_SNP [dm6]	A	G	2.117e^-4	0.982	UPSTREAM Tsp42Ef & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16847782	X_16847782_SNP [dm3] X_16953749_SNP [dm6]	C	T	2.130e^-4	0.982	SYNONYMOUS_CODING RhoGAP15B
X	22272985	X_22272985_INS [dm3] X_22871149_INS [dm6]	G	GGG	2.135e^-4	0.982	INTRON CG42346 & 1 other
2R	4146482	2R_4146482_SNP [dm3] 2R_8258977_SNP [dm6]	A	G	2.141e^-4	0.982	UPSTREAM CG30369 & 1 other INTERGENIC
2L	12652370	2L_12652370_SNP [dm3] 2L_12652370_SNP [dm6]	A	T	2.144e^-4	0.982	INTERGENIC
2L	5844816	2L_5844816_SNP [dm3] 2L_5844816_SNP [dm6]	A	T	2.146e^-4	0.982	INTRON TrissinR
3L	14004432	3L_14004432_SNP [dm3] 3L_14011332_SNP [dm6]	C	T	2.151e^-4	0.982	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16920187	X_16920187_SNP [dm3] X_17026154_SNP [dm6]	A	G	2.157e^-4	0.982	INTRON CG45002
3L	11255649	3L_11255649_SNP [dm3] 3L_11262549_SNP [dm6]	G	T	2.158e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7342727	2L_7342727_SNP [dm3] 2L_7342727_SNP [dm6]	A	C	2.161e^-4	0.982	INTRON Wnt6	TF binding site mE1_TFBS_inv
2L	7342798	2L_7342798_SNP [dm3] 2L_7342798_SNP [dm6]	G	C	2.161e^-4	0.982	INTRON Wnt6	TF binding site mE1_TFBS_inv
2R	17643716	2R_17643716_SNP [dm3] 2R_21756211_SNP [dm6]	A	G	2.164e^-4	0.982	INTERGENIC
3R	24521841	3R_24521841_SNP [dm3] 3R_28696119_SNP [dm6]	T	A	2.188e^-4	0.982	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24505182	3R_24505182_SNP [dm3] 3R_28679460_SNP [dm6]	A	G	2.195e^-4	0.982	INTRON CG9990
3L	7861489	3L_7861489_SNP [dm3] 3L_7868389_SNP [dm6]	C	G	2.206e^-4	0.982	UPSTREAM CG32365 INTERGENIC
X	16454267	X_16454267_SNP [dm3] X_16560234_SNP [dm6]	A	G	2.241e^-4	0.982	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16454284	X_16454284_SNP [dm3] X_16560251_SNP [dm6]	C	T	2.241e^-4	0.982	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25282568	3R_25282568_SNP [dm3] 3R_29456846_SNP [dm6]	T	G	2.249e^-4	0.982	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	17284564	X_17284564_SNP [dm3] X_17390531_SNP [dm6]	C	A	2.249e^-4	0.982	INTERGENIC
3L	14245090	3L_14245090_SNP [dm3] 3L_14251990_SNP [dm6]	T	C	2.253e^-4	0.982	INTERGENIC
3R	12019963	3R_12019963_SNP [dm3] 3R_16194241_SNP [dm6]	A	C	2.253e^-4	0.982	UPSTREAM sra INTRON sra
2L	1254818	2L_1254818_SNP [dm3] 2L_1254818_SNP [dm6]	T	A	2.264e^-4	0.982	INTERGENIC
2L	18049814	2L_18049814_SNP [dm3] 2L_18049814_SNP [dm6]	A	T	2.283e^-4	0.982	INTRON rdo
3R	18337023	3R_18337023_DEL [dm3] 3R_22511301_DEL [dm6]	TACT	T	2.295e^-4	0.982	INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	2995994	3L_2995994_SNP [dm3] 3L_2995994_SNP [dm6]	T	C	2.300e^-4	0.982	UTR_3_PRIME CG2113
3L	9605058	3L_9605058_SNP [dm3] 3L_9611958_SNP [dm6]	A	C	2.306e^-4	0.982	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3L	18301026	3L_18301026_SNP [dm3] 3L_18307926_SNP [dm6]	C	T	2.312e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11950766	2L_11950766_SNP [dm3] 2L_11950766_SNP [dm6]	C	G	2.323e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13845675	3R_13845675_SNP [dm3] 3R_18019953_SNP [dm6]	A	G	2.330e^-4	0.982	INTRON DNaseII
3R	13845730	3R_13845730_SNP [dm3] 3R_18020008_SNP [dm6]	C	T	2.330e^-4	0.982	INTRON DNaseII	TF binding site mE1_TFBS_cad
2L	7755355	2L_7755355_SNP [dm3] 2L_7755355_SNP [dm6]	C	T	2.352e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
2L	7755393	2L_7755393_SNP [dm3] 2L_7755393_SNP [dm6]	T	G	2.352e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
2L	7755394	2L_7755394_SNP [dm3] 2L_7755394_SNP [dm6]	A	G	2.352e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
2L	7755434	2L_7755434_SNP [dm3] 2L_7755434_SNP [dm6]	T	C	2.352e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
3R	16443530	3R_16443530_SNP [dm3] 3R_20617808_SNP [dm6]	G	T	2.368e^-4	0.982	UPSTREAM CG5466 & 1 other INTERGENIC
3R	16443934	3R_16443934_SNP [dm3] 3R_20618212_SNP [dm6]	C	T	2.368e^-4	0.982	SPLICE_SITE_REGION CG5466 INTRON CG5466	TF binding site mE1_TFBS_chinmo
3R	22247332	3R_22247332_SNP [dm3] 3R_26421610_SNP [dm6]	T	A	2.378e^-4	0.982	INTERGENIC
3R	22247338	3R_22247338_DEL [dm3] 3R_26421616_DEL [dm6]	AT	A	2.378e^-4	0.982	INTERGENIC
2R	16699797	2R_16699797_SNP [dm3] 2R_20812292_SNP [dm6]	C	T	2.387e^-4	0.982	INTERGENIC
3L	8108706	3L_8108706_SNP [dm3] 3L_8115606_SNP [dm6]	A	G	2.387e^-4	0.982	UPSTREAM msk INTRON Arp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19869544	X_19869544_SNP [dm3] X_19975511_SNP [dm6]	A	G	2.405e^-4	0.982	INTERGENIC
2R	16427381	2R_16427381_INS [dm3] 2R_20539876_INS [dm6]	T	TT	2.410e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16427393	2R_16427393_DEL [dm3] 2R_20539888_DEL [dm6]	AAG	A	2.410e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16427418	2R_16427418_SNP [dm3] 2R_20539913_SNP [dm6]	C	T	2.410e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16427420	2R_16427420_SNP [dm3] 2R_20539915_SNP [dm6]	C	T	2.410e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	18652381	X_18652381_SNP [dm3] X_18758348_SNP [dm6]	A	T	2.413e^-4	0.982	INTERGENIC
2R	9232547	2R_9232547_SNP [dm3] 2R_13345042_SNP [dm6]	G	A	2.418e^-4	0.982	INTRON CR44206
X	17908477	X_17908477_INS [dm3] X_18014444_INS [dm6]	T	TT	2.420e^-4	0.982	UTR_5_PRIME Sh INTRON Sh
2L	12612983	2L_12612983_SNP [dm3] 2L_12612983_SNP [dm6]	T	C	2.424e^-4	0.982	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12612988	2L_12612988_SNP [dm3] 2L_12612988_SNP [dm6]	C	T	2.424e^-4	0.982	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	18421933	2R_18421933_SNP [dm3] 2R_22534428_SNP [dm6]	A	G	2.433e^-4	0.982	INTRON px
2L	9679134	2L_9679134_SNP [dm3] 2L_9679134_SNP [dm6]	G	T	2.435e^-4	0.982	INTERGENIC
X	19616301	X_19616301_SNP [dm3] X_19722268_SNP [dm6]	A	T	2.441e^-4	0.982	INTRON CG12531	TF binding site mE1_TFBS_chinmo
2L	14433687	2L_14433687_SNP [dm3] 2L_14433687_SNP [dm6]	A	G	2.443e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12598032	3L_12598032_SNP [dm3] 3L_12604932_SNP [dm6]	G	A	2.468e^-4	0.982	INTERGENIC
3L	13997694	3L_13997694_SNP [dm3] 3L_14004594_SNP [dm6]	T	C	2.470e^-4	0.982	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3R	24976253	3R_24976253_SNP [dm3] 3R_29150531_SNP [dm6]	C	A	2.471e^-4	0.982	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26280554	3R_26280554_SNP [dm3] 3R_30454832_SNP [dm6]	G	A	2.479e^-4	0.982	INTRON aralar1
X	17327591	X_17327591_SNP [dm3] X_17433558_SNP [dm6]	T	C	2.480e^-4	0.982	INTRON CG12994
3R	16711344	3R_16711344_SNP [dm3] 3R_20885622_SNP [dm6]	C	T	2.481e^-4	0.982	INTERGENIC
3L	9357601	3L_9357601_SNP [dm3] 3L_9364501_SNP [dm6]	C	T	2.490e^-4	0.982	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad
3L	9357606	3L_9357606_SNP [dm3] 3L_9364506_SNP [dm6]	A	G	2.490e^-4	0.982	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15401044	2R_15401044_SNP [dm3] 2R_19513539_SNP [dm6]	T	G	2.493e^-4	0.982	NON_SYNONYMOUS_CODING Ir56d
3L	20383805	3L_20383805_SNP [dm3] 3L_20390705_SNP [dm6]	T	C	2.515e^-4	0.982	SYNONYMOUS_CODING fbl DOWNSTREAM CG33969 EXON CR43944	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26277969	3R_26277969_SNP [dm3] 3R_30452247_SNP [dm6]	C	G	2.517e^-4	0.982	INTRON aralar1
2R	12366397	2R_12366397_SNP [dm3] 2R_16478892_SNP [dm6]	C	T	2.524e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6256362	2R_6256362_SNP [dm3] 2R_10368857_SNP [dm6]	C	T	2.547e^-4	0.982	INTRON CG42732
2L	7972964	2L_7972964_SNP [dm3] 2L_7972964_SNP [dm6]	T	C	2.549e^-4	0.982	INTRON Snoo
2L	7972966	2L_7972966_SNP [dm3] 2L_7972966_SNP [dm6]	C	T	2.549e^-4	0.982	INTRON Snoo
2R	10208973	2R_10208973_SNP [dm3] 2R_14321468_SNP [dm6]	A	T	2.550e^-4	0.982	INTRON Shroom	TF binding site mE1_TFBS_cad
3L	7223461	3L_7223461_SNP [dm3] 3L_7230361_SNP [dm6]	T	C	2.551e^-4	0.982	INTERGENIC
X	10977736	X_10977736_SNP [dm3] X_11083703_SNP [dm6]	T	C	2.557e^-4	0.982	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	1526071	3L_1526071_SNP [dm3] 3L_1526071_SNP [dm6]	T	C	2.574e^-4	0.982	INTRON CG12090
3L	16741655	3L_16741655_SNP [dm3] 3L_16748555_SNP [dm6]	T	A	2.577e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13216700	3L_13216700_SNP [dm3] 3L_13223600_SNP [dm6]	T	G	2.586e^-4	0.982	INTERGENIC
X	16844807	X_16844807_SNP [dm3] X_16950774_SNP [dm6]	T	G	2.596e^-4	0.982	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16096816	X_16096816_SNP [dm3] X_16202783_SNP [dm6]	G	T	2.600e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16096826	X_16096826_SNP [dm3] X_16202793_SNP [dm6]	A	T	2.600e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16299435	2L_16299435_SNP [dm3] 2L_16299435_SNP [dm6]	T	C	2.602e^-4	0.982	UTR_5_PRIME heix UPSTREAM CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15265091	3L_15265091_SNP [dm3] 3L_15271991_SNP [dm6]	C	G	2.606e^-4	0.982	INTERGENIC
3R	23062431	3R_23062431_SNP [dm3] 3R_27236709_SNP [dm6]	C	G	2.612e^-4	0.982	DOWNSTREAM CG31068 INTRON CG31064
2L	2204611	2L_2204611_SNP [dm3] 2L_2204611_SNP [dm6]	C	T	2.614e^-4	0.982	INTRON CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11929922	2L_11929922_SNP [dm3] 2L_11929922_SNP [dm6]	G	A	2.616e^-4	0.982	INTERGENIC
2L	11929935	2L_11929935_SNP [dm3] 2L_11929935_SNP [dm6]	T	C	2.616e^-4	0.982	INTERGENIC
2L	11929945	2L_11929945_INS [dm3] 2L_11929945_INS [dm6]	G	CC	2.616e^-4	0.982	INTERGENIC
2R	16424484	2R_16424484_SNP [dm3] 2R_20536979_SNP [dm6]	C	T	2.618e^-4	0.982	SYNONYMOUS_CODING CG13423
2R	16424596	2R_16424596_SNP [dm3] 2R_20537091_SNP [dm6]	T	C	2.618e^-4	0.982	SYNONYMOUS_CODING CG13423
2L	10525890	2L_10525890_SNP [dm3] 2L_10525890_SNP [dm6]	A	C	2.622e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3020244	2R_3020244_SNP [dm3] 2R_7132739_SNP [dm6]	T	C	2.623e^-4	0.982	UPSTREAM Cyp9b2 INTERGENIC
2L	12612516	2L_12612516_SNP [dm3] 2L_12612516_SNP [dm6]	A	C	2.643e^-4	0.982	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16453381	X_16453381_SNP [dm3] X_16559348_SNP [dm6]	G	A	2.654e^-4	0.982	SYNONYMOUS_CODING Pp2B-14D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12358392	2R_12358392_SNP [dm3] 2R_16470887_SNP [dm6]	A	G	2.661e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9103289	2L_9103289_SNP [dm3] 2L_9103289_SNP [dm6]	G	A	2.663e^-4	0.982	INTERGENIC
3L	10402108	3L_10402108_SNP [dm3] 3L_10409008_SNP [dm6]	T	C	2.671e^-4	0.982	INTERGENIC
3L	10829588	3L_10829588_SNP [dm3] 3L_10836488_SNP [dm6]	G	A	2.674e^-4	0.982	INTERGENIC
X	16096849	X_16096849_DEL [dm3] X_16202816_DEL [dm6]	TT	C	2.687e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11955535	3L_11955535_SNP [dm3] 3L_11962435_SNP [dm6]	G	C	2.689e^-4	0.982	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	13893647	2R_13893647_SNP [dm3] 2R_18006142_SNP [dm6]	T	A	2.691e^-4	0.982	DOWNSTREAM CR44419 INTRON dpr13
X	16096941	X_16096941_SNP [dm3] X_16202908_SNP [dm6]	C	T	2.693e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	22071544	3R_22071544_SNP [dm3] 3R_26245822_SNP [dm6]	C	T	2.701e^-4	0.982	INTRON CR42745
3R	26280024	3R_26280024_SNP [dm3] 3R_30454302_SNP [dm6]	C	A	2.707e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
X	16450623	X_16450623_SNP [dm3] X_16556590_SNP [dm6]	T	A	2.731e^-4	0.982	UTR_3_PRIME Pp2B-14D DOWNSTREAM Pp2B-14D
3L	11459284	3L_11459284_SNP [dm3] 3L_11466184_SNP [dm6]	G	T	2.732e^-4	0.982	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20531731	X_20531731_SNP [dm3] X_20660704_SNP [dm6]	C	T	2.732e^-4	0.982	INTRON Cyp6v1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3R	20877075	3R_20877075_SNP [dm3] 3R_25051353_SNP [dm6]	C	T	2.735e^-4	0.982	NON_SYNONYMOUS_CODING CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16454257	X_16454257_SNP [dm3] X_16560224_SNP [dm6]	G	T	2.760e^-4	0.982	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7409959	2L_7409959_SNP [dm3] 2L_7409959_SNP [dm6]	T	C	2.766e^-4	0.982	UPSTREAM CG5181 & 1 other INTERGENIC
2L	7409961	2L_7409961_SNP [dm3] 2L_7409961_SNP [dm6]	T	A	2.766e^-4	0.982	UPSTREAM CG5181 & 1 other INTERGENIC
X	16141732	X_16141732_SNP [dm3] X_16247699_SNP [dm6]	G	T	2.775e^-4	0.982	INTERGENIC
X	4405551	X_4405551_SNP [dm3] X_4511518_SNP [dm6]	T	G	2.776e^-4	0.982	INTRON CR32773	silencer mE1_HDAC_PRE
3R	15333839	3R_15333839_SNP [dm3] 3R_19508117_SNP [dm6]	T	C	2.780e^-4	0.982	INTRON Dys
2R	18078006	2R_18078006_SNP [dm3] 2R_22190501_SNP [dm6]	G	A	2.793e^-4	0.982	SPLICE_SITE_REGION Swim SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
2R	18078084	2R_18078084_SNP [dm3] 2R_22190579_SNP [dm6]	C	T	2.793e^-4	0.982	SPLICE_SITE_REGION Swim DOWNSTREAM Vps35 INTRON Swim	TF binding site mE1_TFBS_cad
2R	18078267	2R_18078267_SNP [dm3] 2R_22190762_SNP [dm6]	G	A	2.793e^-4	0.982	SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18506132	3R_18506132_SNP [dm3] 3R_22680410_SNP [dm6]	G	T	2.801e^-4	0.982	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17315456	X_17315456_SNP [dm3] X_17421423_SNP [dm6]	G	A	2.805e^-4	0.982	SYNONYMOUS_CODING CG8611 DOWNSTREAM CG12994	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18506126	3R_18506126_SNP [dm3] 3R_22680404_SNP [dm6]	G	A	2.826e^-4	0.982	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5960929	2L_5960929_DEL [dm3] 2L_5960929_DEL [dm6]	ATA	A	2.837e^-4	0.982	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9680308	2L_9680308_SNP [dm3] 2L_9680308_SNP [dm6]	T	A	2.862e^-4	0.982	INTERGENIC
3R	19675395	3R_19675395_SNP [dm3] 3R_23849673_SNP [dm6]	G	A	2.881e^-4	0.982	UTR_3_PRIME CG34355
3L	1119065	3L_1119065_SNP [dm3] 3L_1119065_SNP [dm6]	G	A	2.882e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18034982	3L_18034982_SNP [dm3] 3L_18041882_SNP [dm6]	A	C	2.884e^-4	0.982	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3L	18034985	3L_18034985_SNP [dm3] 3L_18041885_SNP [dm6]	G	C	2.884e^-4	0.982	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
2R	17104840	2R_17104840_SNP [dm3] 2R_21217335_SNP [dm6]	T	A	2.908e^-4	0.982	NON_SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP
3L	18596134	3L_18596134_SNP [dm3] 3L_18603034_SNP [dm6]	C	T	2.910e^-4	0.982	UPSTREAM CG4174 & 1 other INTRON CG4174 & 1 other
3R	14556826	3R_14556826_SNP [dm3] 3R_18731104_SNP [dm6]	C	G	2.918e^-4	0.982	UTR_3_PRIME Cha
2L	11557870	2L_11557870_SNP [dm3] 2L_11557870_SNP [dm6]	T	A	2.926e^-4	0.982	INTERGENIC
3L	14895936	3L_14895936_SNP [dm3] 3L_14902836_SNP [dm6]	T	A	2.926e^-4	0.982	UPSTREAM DCX-EMAP INTERGENIC
3L	14896104	3L_14896104_INS [dm3] 3L_14903004_INS [dm6]	A	ATA	2.926e^-4	0.982	UPSTREAM DCX-EMAP INTERGENIC
2R	18311281	2R_18311281_SNP [dm3] 2R_22423776_SNP [dm6]	C	A	2.929e^-4	0.982	INTRON rad50
3R	19570725	3R_19570725_SNP [dm3] 3R_23745003_SNP [dm6]	C	T	2.968e^-4	0.982	INTRON Hmgcr
3L	8689079	3L_8689079_DEL [dm3] 3L_8695979_DEL [dm6]	TT	T	2.974e^-4	0.982	INTERGENIC
3R	18637276	3R_18637276_SNP [dm3] 3R_22811554_SNP [dm6]	C	G	2.974e^-4	0.982	INTERGENIC
X	5327610	X_5327610_SNP [dm3] X_5433577_SNP [dm6]	C	A	2.974e^-4	0.982	EXON CR44471	TF binding site mE1_TFBS_Trl
X	16846704	X_16846704_SNP [dm3] X_16952671_SNP [dm6]	C	T	2.991e^-4	0.982	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16846860	X_16846860_SNP [dm3] X_16952827_SNP [dm6]	T	C	2.991e^-4	0.982	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16848349	X_16848349_INS [dm3] X_16954316_INS [dm6]	T	TT	2.991e^-4	0.982	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16854529	X_16854529_SNP [dm3] X_16960496_SNP [dm6]	A	T	2.991e^-4	0.982	INTRON CG9086	TF binding site mE1_TFBS_cad
X	16855069	X_16855069_SNP [dm3] X_16961036_SNP [dm6]	G	A	2.991e^-4	0.982	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16855153	X_16855153_SNP [dm3] X_16961120_SNP [dm6]	T	C	2.991e^-4	0.982	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16856948	X_16856948_SNP [dm3] X_16962915_SNP [dm6]	C	A	2.991e^-4	0.982	INTRON CG9086
X	16859829	X_16859829_SNP [dm3] X_16965796_SNP [dm6]	G	A	2.991e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
X	16860837	X_16860837_SNP [dm3] X_16966804_SNP [dm6]	A	G	2.991e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	16861279	X_16861279_SNP [dm3] X_16967246_SNP [dm6]	C	T	2.991e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	16861282	X_16861282_DEL [dm3] X_16967249_DEL [dm6]	GGAATTGAAAA...	TC	2.991e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	16861294	X_16861294_SNP [dm3] X_16967261_SNP [dm6]	A	G	2.991e^-4	0.982	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	6335891	2L_6335891_SNP [dm3] 2L_6335891_SNP [dm6]	T	C	2.994e^-4	0.982	NON_SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10823228	3L_10823228_SNP [dm3] 3L_10830128_SNP [dm6]	T	A	3.006e^-4	0.982	INTERGENIC
3L	10823244	3L_10823244_SNP [dm3] 3L_10830144_SNP [dm6]	T	C	3.006e^-4	0.982	INTERGENIC
3L	10823246	3L_10823246_SNP [dm3] 3L_10830146_SNP [dm6]	A	T	3.006e^-4	0.982	INTERGENIC
3L	10823260	3L_10823260_SNP [dm3] 3L_10830160_SNP [dm6]	G	T	3.006e^-4	0.982	INTERGENIC
X	3926149	X_3926149_SNP [dm3] X_4032116_SNP [dm6]	G	A	3.007e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24976325	3R_24976325_SNP [dm3] 3R_29150603_SNP [dm6]	G	A	3.009e^-4	0.982	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24976600	3R_24976600_SNP [dm3] 3R_29150878_SNP [dm6]	C	T	3.009e^-4	0.982	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10899745	3R_10899745_SNP [dm3] 3R_15074023_SNP [dm6]	A	C	3.010e^-4	0.982	INTRON dpr9
X	11265057	X_11265057_SNP [dm3] X_11371024_SNP [dm6]	C	T	3.012e^-4	0.982	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	3.013e^-4	0.982	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14894470	3L_14894470_SNP [dm3] 3L_14901370_SNP [dm6]	T	C	3.077e^-4	0.982	INTERGENIC
3L	14894502	3L_14894502_SNP [dm3] 3L_14901402_SNP [dm6]	C	A	3.077e^-4	0.982	INTERGENIC
3L	2893813	3L_2893813_SNP [dm3] 3L_2893813_SNP [dm6]	T	C	3.093e^-4	0.982	INTERGENIC
X	10595865	X_10595865_SNP [dm3] X_10701832_SNP [dm6]	G	A	3.102e^-4	0.982	SYNONYMOUS_CODING X11Lbeta INTRON X11Lbeta
2R	13138377	2R_13138377_SNP [dm3] 2R_17250872_SNP [dm6]	C	G	3.103e^-4	0.982	INTRON mbl
2L	769774	2L_769774_SNP [dm3] 2L_769774_SNP [dm6]	G	C	3.106e^-4	0.982	INTERGENIC
2L	769790	2L_769790_SNP [dm3] 2L_769790_SNP [dm6]	G	A	3.106e^-4	0.982	INTERGENIC
2L	2146598	2L_2146598_SNP [dm3] 2L_2146598_SNP [dm6]	G	T	3.107e^-4	0.982	NON_SYNONYMOUS_CODING CG11723 UPSTREAM CG7261	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	10401896	3R_10401896_DEL [dm3] 3R_14576174_DEL [dm6]	TT	C	3.111e^-4	0.982	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16439568	3R_16439568_SNP [dm3] 3R_20613846_SNP [dm6]	A	T	3.115e^-4	0.982	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
3R	16439583	3R_16439583_SNP [dm3] 3R_20613861_SNP [dm6]	A	G	3.115e^-4	0.982	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
2R	12504385	2R_12504385_SNP [dm3] 2R_16616880_SNP [dm6]	G	C	3.116e^-4	0.982	INTRON CG5065
3L	14005889	3L_14005889_SNP [dm3] 3L_14012789_SNP [dm6]	A	C	3.153e^-4	0.982	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14006113	3L_14006113_SNP [dm3] 3L_14013013_SNP [dm6]	G	A	3.153e^-4	0.982	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14006521	3L_14006521_SNP [dm3] 3L_14013421_SNP [dm6]	T	A	3.153e^-4	0.982	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14007243	3L_14007243_SNP [dm3] 3L_14014143_SNP [dm6]	C	G	3.153e^-4	0.982	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21622225	3R_21622225_SNP [dm3] 3R_25796503_SNP [dm6]	T	C	3.162e^-4	0.982	DOWNSTREAM CR43847 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5332253	2R_5332253_SNP [dm3] 2R_9444748_SNP [dm6]	G	C	3.175e^-4	0.982	UTR_5_PRIME ced-6 DOWNSTREAM CR45321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5843234	2L_5843234_SNP [dm3] 2L_5843234_SNP [dm6]	T	A	3.176e^-4	0.982	INTRON TrissinR
2L	5844805	2L_5844805_DEL [dm3] 2L_5844805_DEL [dm6]	GTGG	G	3.176e^-4	0.982	INTRON TrissinR
2L	5854689	2L_5854689_SNP [dm3] 2L_5854689_SNP [dm6]	T	C	3.180e^-4	0.982	INTRON TrissinR
3R	24976270	3R_24976270_SNP [dm3] 3R_29150548_SNP [dm6]	C	A	3.204e^-4	0.982	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1143910	2L_1143910_SNP [dm3] 2L_1143910_SNP [dm6]	A	T	3.227e^-4	0.982	DOWNSTREAM CR45717 INTRON MFS3
2R	9689963	2R_9689963_SNP [dm3] 2R_13802458_SNP [dm6]	C	T	3.233e^-4	0.982	INTRON Cpr50Cb
2R	16427387	2R_16427387_SNP [dm3] 2R_20539882_SNP [dm6]	A	T	3.235e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	500928	3R_500928_DEL [dm3] 3R_4675206_DEL [dm6]	AAA	A	3.247e^-4	0.982	DOWNSTREAM CR44157 INTRON CG43427
3R	22761386	3R_22761386_SNP [dm3] 3R_26935664_SNP [dm6]	G	T	3.259e^-4	0.982	INTRON sda
3L	10827496	3L_10827496_SNP [dm3] 3L_10834396_SNP [dm6]	C	T	3.259e^-4	0.982	INTERGENIC
3R	26280057	3R_26280057_SNP [dm3] 3R_30454335_SNP [dm6]	A	C	3.266e^-4	0.982	UPSTREAM aralar1 INTRON aralar1
2L	21861774	2L_21861774_SNP [dm3] 2L_21861774_SNP [dm6]	A	T	3.271e^-4	0.982	INTRON CR44917	TF binding site mE1_TFBS_HSA
2R	13014858	2R_13014858_SNP [dm3] 2R_17127353_SNP [dm6]	G	A	3.271e^-4	0.982	UPSTREAM CG15605 DOWNSTREAM Amy-d INTERGENIC
2L	2150173	2L_2150173_SNP [dm3] 2L_2150173_SNP [dm6]	C	T	3.281e^-4	0.982	SYNONYMOUS_CODING CG7261
3R	10401901	3R_10401901_SNP [dm3] 3R_14576179_SNP [dm6]	A	C	3.292e^-4	0.982	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9011223	3R_9011223_DEL [dm3] 3R_13185501_DEL [dm6]	GT	G	3.294e^-4	0.982	DOWNSTREAM CG8508 INTERGENIC
X	11371686	X_11371686_SNP [dm3] X_11477653_SNP [dm6]	C	T	3.301e^-4	0.982	SYNONYMOUS_CODING Cyp4g15
2L	20934987	2L_20934987_SNP [dm3] 2L_20934987_SNP [dm6]	G	A	3.310e^-4	0.982	UPSTREAM CG9270 INTERGENIC
2R	18686454	2R_18686454_SNP [dm3] 2R_22798949_SNP [dm6]	G	T	3.315e^-4	0.982	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17445866	2L_17445866_SNP [dm3] 2L_17445866_SNP [dm6]	A	G	3.322e^-4	0.982	UPSTREAM dl INTRON dl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12092296	2L_12092296_SNP [dm3] 2L_12092296_SNP [dm6]	G	A	3.334e^-4	0.982	INTRON Pex19 EXON CR44594	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	20472316	X_20472316_SNP [dm3] X_20601289_SNP [dm6]	T	A	3.335e^-4	0.982	INTRON RunxA
3R	11076877	3R_11076877_SNP [dm3] 3R_15251155_SNP [dm6]	G	T	3.341e^-4	0.982	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18074547	2R_18074547_SNP [dm3] 2R_22187042_SNP [dm6]	G	A	3.345e^-4	0.982	SYNONYMOUS_CODING Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10825159	3L_10825159_SNP [dm3] 3L_10832059_SNP [dm6]	G	A	3.345e^-4	0.982	INTERGENIC
2R	9234290	2R_9234290_SNP [dm3] 2R_13346785_SNP [dm6]	C	T	3.349e^-4	0.982	INTRON CR44206
2R	9234311	2R_9234311_SNP [dm3] 2R_13346806_SNP [dm6]	G	A	3.349e^-4	0.982	INTRON CR44206
3L	20196134	3L_20196134_SNP [dm3] 3L_20203034_SNP [dm6]	A	G	3.351e^-4	0.982	SYNONYMOUS_CODING CG7298	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15246590	3R_15246590_SNP [dm3] 3R_19420868_SNP [dm6]	C	T	3.353e^-4	0.982	INTRON CG31221
3L	6965378	3L_6965378_INS [dm3] 3L_6972278_INS [dm6]	C	CGC	3.361e^-4	0.982	DOWNSTREAM CG9953 & 1 other INTRON CG10063
3L	8921031	3L_8921031_SNP [dm3] 3L_8927931_SNP [dm6]	G	A	3.388e^-4	0.982	INTRON Tsp66E
X	16096811	X_16096811_SNP [dm3] X_16202778_SNP [dm6]	T	C	3.396e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11459743	2L_11459743_SNP [dm3] 2L_11459743_SNP [dm6]	G	A	3.398e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	21577405	3L_21577405_DEL [dm3] 3L_21584305_DEL [dm6]	TTTAAACTTTCCTTACA...	C	3.403e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	16148546	X_16148546_SNP [dm3] X_16254513_SNP [dm6]	G	T	3.413e^-4	0.982	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16148558	X_16148558_SNP [dm3] X_16254525_SNP [dm6]	G	A	3.413e^-4	0.982	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12956000	X_12956000_SNP [dm3] X_13061967_SNP [dm6]	A	C	3.445e^-4	0.982	UPSTREAM mir-971 INTRON rad
2L	5372800	2L_5372800_SNP [dm3] 2L_5372800_SNP [dm6]	G	C	3.448e^-4	0.982	INTERGENIC
X	20399556	X_20399556_SNP [dm3] X_20528529_SNP [dm6]	T	A	3.461e^-4	0.982	DOWNSTREAM CG42579 INTERGENIC
3L	14147383	3L_14147383_SNP [dm3] 3L_14154283_SNP [dm6]	G	A	3.480e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14147384	3L_14147384_SNP [dm3] 3L_14154284_SNP [dm6]	G	A	3.480e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1053250	2L_1053250_SNP [dm3] 2L_1053250_SNP [dm6]	A	C	3.483e^-4	0.982	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19676546	3R_19676546_SNP [dm3] 3R_23850824_SNP [dm6]	A	G	3.485e^-4	0.982	UTR_3_PRIME CG34355
2L	9103284	2L_9103284_SNP [dm3] 2L_9103284_SNP [dm6]	G	T	3.486e^-4	0.982	INTERGENIC
2R	10208955	2R_10208955_SNP [dm3] 2R_14321450_SNP [dm6]	C	A	3.491e^-4	0.982	INTRON Shroom	TF binding site mE1_TFBS_cad
2R	12366382	2R_12366382_SNP [dm3] 2R_16478877_SNP [dm6]	T	C	3.495e^-4	0.982	INTERGENIC
3L	9439798	3L_9439798_SNP [dm3] 3L_9446698_SNP [dm6]	T	C	3.504e^-4	0.982	UPSTREAM CG3529 DOWNSTREAM CG33926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
3R	12812981	3R_12812981_SNP [dm3] 3R_16987259_SNP [dm6]	G	T	3.507e^-4	0.982	UPSTREAM CG18622 INTRON CG18622
3R	10969685	3R_10969685_SNP [dm3] 3R_15143963_SNP [dm6]	T	A	3.522e^-4	0.982	INTRON GlyS
3L	4077207	3L_4077207_SNP [dm3] 3L_4077207_SNP [dm6]	T	C	3.527e^-4	0.982	INTRON Gad1
3L	6961726	3L_6961726_SNP [dm3] 3L_6968626_SNP [dm6]	G	A	3.530e^-4	0.982	SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
3L	13168538	3L_13168538_SNP [dm3] 3L_13175438_SNP [dm6]	T	C	3.532e^-4	0.982	SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_sens
3L	20239768	3L_20239768_SNP [dm3] 3L_20246668_SNP [dm6]	T	C	3.541e^-4	0.982	INTERGENIC
2L	10055059	2L_10055059_SNP [dm3] 2L_10055059_SNP [dm6]	T	G	3.542e^-4	0.982	SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10977814	X_10977814_SNP [dm3] X_11083781_SNP [dm6]	G	A	3.542e^-4	0.982	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	720771	2R_720771_SNP [dm3] 2R_4833266_SNP [dm6]	T	A	3.556e^-4	0.982	INTERGENIC	transposable element FlyBase
3R	21622350	3R_21622350_SNP [dm3] 3R_25796628_SNP [dm6]	A	C	3.573e^-4	0.982	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20198752	3L_20198752_SNP [dm3] 3L_20205652_SNP [dm6]	G	A	3.582e^-4	0.982	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8776784	3L_8776784_SNP [dm3] 3L_8783684_SNP [dm6]	A	G	3.586e^-4	0.982	INTRON Fhos
2R	777746	2R_777746_SNP [dm3] 2R_4890241_SNP [dm6]	G	C	3.587e^-4	0.982	INTERGENIC	transposable element FlyBase
2L	7755258	2L_7755258_SNP [dm3] 2L_7755258_SNP [dm6]	A	C	3.597e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
3L	12489784	3L_12489784_SNP [dm3] 3L_12496684_SNP [dm6]	A	G	3.604e^-4	0.982	INTRON CG10657
2L	7971312	2L_7971312_SNP [dm3] 2L_7971312_SNP [dm6]	G	T	3.605e^-4	0.982	INTRON Snoo
2L	9833387	2L_9833387_SNP [dm3] 2L_9833387_SNP [dm6]	T	C	3.607e^-4	0.982	INTRON nAChRalpha6
2L	9833395	2L_9833395_SNP [dm3] 2L_9833395_SNP [dm6]	T	G	3.607e^-4	0.982	INTRON nAChRalpha6
3R	12723952	3R_12723952_SNP [dm3] 3R_16898230_SNP [dm6]	C	T	3.607e^-4	0.982	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	14896299	3L_14896299_SNP [dm3] 3L_14903199_SNP [dm6]	A	G	3.618e^-4	0.982	UPSTREAM DCX-EMAP INTERGENIC
3R	7313945	3R_7313945_SNP [dm3] 3R_11488223_SNP [dm6]	C	A	3.627e^-4	0.982	DOWNSTREAM CR45581 INTERGENIC
2L	16915231	2L_16915231_SNP [dm3] 2L_16915231_SNP [dm6]	G	T	3.628e^-4	0.982	SYNONYMOUS_CODING tweek
3L	5013194	3L_5013194_SNP [dm3] 3L_5013194_SNP [dm6]	T	A	3.646e^-4	0.982	INTRON Con
3L	9818012	3L_9818012_SNP [dm3] 3L_9824912_SNP [dm6]	G	A	3.666e^-4	0.982	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
3L	20193950	3L_20193950_SNP [dm3] 3L_20200850_SNP [dm6]	G	T	3.671e^-4	0.982	SYNONYMOUS_CODING obst-F DOWNSTREAM CG42833	TF binding site mE1_TFBS_HSA
3L	20194001	3L_20194001_SNP [dm3] 3L_20200901_SNP [dm6]	G	A	3.671e^-4	0.982	SYNONYMOUS_CODING obst-F DOWNSTREAM CG42833	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15263986	3L_15263986_SNP [dm3] 3L_15270886_SNP [dm6]	C	T	3.675e^-4	0.982	INTERGENIC
3R	24907018	3R_24907018_SNP [dm3] 3R_29081296_SNP [dm6]	T	C	3.679e^-4	0.982	INTRON CG11873
2L	4771815	2L_4771815_SNP [dm3] 2L_4771815_SNP [dm6]	T	C	3.687e^-4	0.982	INTRON CG15630
3L	20197419	3L_20197419_SNP [dm3] 3L_20204319_SNP [dm6]	G	A	3.696e^-4	0.982	UTR_3_PRIME CG7290 UPSTREAM CG7298 DOWNSTREAM CG7290
3L	4700327	3L_4700327_SNP [dm3] 3L_4700327_SNP [dm6]	C	T	3.699e^-4	0.982	INTRON RhoGEF64C
3L	18034990	3L_18034990_DEL [dm3] 3L_18041890_DEL [dm6]	CT	C	3.703e^-4	0.982	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
X	12349090	X_12349090_SNP [dm3] X_12455057_SNP [dm6]	T	C	3.712e^-4	0.982	SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
3L	18034962	3L_18034962_SNP [dm3] 3L_18041862_SNP [dm6]	T	A	3.714e^-4	0.982	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3R	25515655	3R_25515655_SNP [dm3] 3R_29689933_SNP [dm6]	A	C	3.716e^-4	0.982	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
X	13340916	X_13340916_SNP [dm3] X_13446883_SNP [dm6]	G	C	3.743e^-4	0.982	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9440661	3L_9440661_SNP [dm3] 3L_9447561_SNP [dm6]	C	A	3.745e^-4	0.982	INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	25337035	3R_25337035_SNP [dm3] 3R_29511313_SNP [dm6]	T	A	3.747e^-4	0.982	INTERGENIC
2R	9894307	2R_9894307_SNP [dm3] 2R_14006802_SNP [dm6]	C	T	3.762e^-4	0.982	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	537694	3R_537694_SNP [dm3] 3R_4711972_SNP [dm6]	A	G	3.763e^-4	0.982	UTR_3_PRIME CG43427 DOWNSTREAM CG9769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5983993	2L_5983993_SNP [dm3] 2L_5983993_SNP [dm6]	C	A	3.764e^-4	0.982	INTRON eIF-4a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12438709	2R_12438709_SNP [dm3] 2R_16551204_SNP [dm6]	T	A	3.780e^-4	0.982	INTERGENIC
3R	22980139	3R_22980139_SNP [dm3] 3R_27154417_SNP [dm6]	A	G	3.796e^-4	0.982	INTRON Men-b
3R	22980141	3R_22980141_SNP [dm3] 3R_27154419_SNP [dm6]	A	G	3.796e^-4	0.982	INTRON Men-b
3R	22980143	3R_22980143_SNP [dm3] 3R_27154421_SNP [dm6]	T	A	3.796e^-4	0.982	INTRON Men-b
2R	16376449	2R_16376449_SNP [dm3] 2R_20488944_SNP [dm6]	C	T	3.797e^-4	0.982	INTERGENIC
3L	14896056	3L_14896056_DEL [dm3] 3L_14902956_DEL [dm6]	ATA	A	3.806e^-4	0.982	UPSTREAM DCX-EMAP INTERGENIC
3L	6960435	3L_6960435_SNP [dm3] 3L_6967335_SNP [dm6]	G	A	3.807e^-4	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960440	3L_6960440_SNP [dm3] 3L_6967340_SNP [dm6]	C	T	3.807e^-4	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960442	3L_6960442_SNP [dm3] 3L_6967342_SNP [dm6]	T	G	3.807e^-4	0.982	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	512906	3R_512906_SNP [dm3] 3R_4687184_SNP [dm6]	C	T	3.811e^-4	0.982	INTRON CG43427	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10519516	3L_10519516_SNP [dm3] 3L_10526416_SNP [dm6]	G	A	3.814e^-4	0.982	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10400970	3L_10400970_SNP [dm3] 3L_10407870_SNP [dm6]	A	G	3.818e^-4	0.982	INTERGENIC
3R	23117783	3R_23117783_SNP [dm3] 3R_27292061_SNP [dm6]	A	T	3.826e^-4	0.982	DOWNSTREAM Hmu INTRON CG3348
3R	14847069	3R_14847069_SNP [dm3] 3R_19021347_SNP [dm6]	C	G	3.833e^-4	0.982	SYNONYMOUS_CODING gukh UTR_3_PRIME gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26670833	3R_26670833_SNP [dm3] 3R_30845111_SNP [dm6]	G	C	3.838e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	16854308	X_16854308_SNP [dm3] X_16960275_SNP [dm6]	G	A	3.841e^-4	0.982	SPLICE_SITE_REGION CG9086 INTRON CG9086
3L	20908241	3L_20908241_SNP [dm3] 3L_20915141_SNP [dm6]	C	G	3.844e^-4	0.982	INTERGENIC
3R	21622207	3R_21622207_SNP [dm3] 3R_25796485_SNP [dm6]	A	G	3.848e^-4	0.982	DOWNSTREAM CR43847 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21622235	3R_21622235_SNP [dm3] 3R_25796513_SNP [dm6]	A	T	3.848e^-4	0.982	DOWNSTREAM CR43847 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21622244	3R_21622244_SNP [dm3] 3R_25796522_SNP [dm6]	C	A	3.848e^-4	0.982	DOWNSTREAM CR43847 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10187907	2L_10187907_SNP [dm3] 2L_10187907_SNP [dm6]	C	G	3.866e^-4	0.982	INTRON Sur
3L	9280779	3L_9280779_SNP [dm3] 3L_9287679_SNP [dm6]	G	A	3.872e^-4	0.982	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
3L	15265391	3L_15265391_SNP [dm3] 3L_15272291_SNP [dm6]	C	T	3.901e^-4	0.982	INTERGENIC
3R	25307946	3R_25307946_SNP [dm3] 3R_29482224_SNP [dm6]	G	A	3.910e^-4	0.982	INTRON Ptp99A
3R	16487592	3R_16487592_SNP [dm3] 3R_20661870_SNP [dm6]	T	A	3.911e^-4	0.982	INTERGENIC
3R	14494302	3R_14494302_SNP [dm3] 3R_18668580_SNP [dm6]	G	A	3.920e^-4	0.982	UPSTREAM CG7702 DOWNSTREAM CG31231 INTRON CG31229 EXON CR45028
3R	13209399	3R_13209399_SNP [dm3] 3R_17383677_SNP [dm6]	G	A	3.926e^-4	0.982	UPSTREAM CR43196 INTRON Brf & 1 other
2L	18375462	2L_18375462_SNP [dm3] 2L_18375462_SNP [dm6]	C	A	3.930e^-4	0.982	INTRON Fas3
3L	5143011	3L_5143011_SNP [dm3] 3L_5149911_SNP [dm6]	G	A	3.962e^-4	0.982	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_sens
3L	5143029	3L_5143029_SNP [dm3] 3L_5149929_SNP [dm6]	G	A	3.962e^-4	0.982	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_sens
2R	16427525	2R_16427525_SNP [dm3] 2R_20540020_SNP [dm6]	G	A	3.972e^-4	0.982	NON_SYNONYMOUS_CODING CG13428 UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9461544	3L_9461544_SNP [dm3] 3L_9468444_SNP [dm6]	A	G	3.982e^-4	0.982	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14787047	X_14787047_SNP [dm3] X_14893014_SNP [dm6]	A	T	3.983e^-4	0.982	INTRON Flo2 & 1 other
3L	15226567	3L_15226567_SNP [dm3] 3L_15233467_SNP [dm6]	T	C	3.985e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
X	16451663	X_16451663_SNP [dm3] X_16557630_SNP [dm6]	C	G	3.986e^-4	0.982	UTR_3_PRIME Pp2B-14D	TF binding site mE1_TFBS_chinmo
3R	10401891	3R_10401891_SNP [dm3] 3R_14576169_SNP [dm6]	C	T	3.990e^-4	0.982	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11472703	3R_11472703_SNP [dm3] 3R_15646981_SNP [dm6]	G	A	3.998e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	9012047	2R_9012047_SNP [dm3] 2R_13124542_SNP [dm6]	G	T	3.998e^-4	0.982	NON_SYNONYMOUS_CODING CG13325
2L	7755332	2L_7755332_SNP [dm3] 2L_7755332_SNP [dm6]	A	G	4.000e^-4	0.982	UPSTREAM CG14538 INTRON CG7196
2R	17105299	2R_17105299_SNP [dm3] 2R_21217794_SNP [dm6]	T	A	4.018e^-4	0.982	UPSTREAM CG15661 DOWNSTREAM ASPP INTERGENIC
3R	16912208	3R_16912208_SNP [dm3] 3R_21086486_SNP [dm6]	A	C	4.041e^-4	0.982	NON_SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	11359387	2L_11359387_SNP [dm3] 2L_11359387_SNP [dm6]	G	T	4.057e^-4	0.982	UTR_5_PRIME salr	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22523320	3R_22523320_SNP [dm3] 3R_26697598_SNP [dm6]	T	C	4.058e^-4	0.982	DOWNSTREAM amon INTERGENIC
3R	13902091	3R_13902091_SNP [dm3] 3R_18076369_SNP [dm6]	C	A	4.067e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13271093	2L_13271093_SNP [dm3] 2L_13271093_SNP [dm6]	T	A	4.069e^-4	0.982	INTRON CG44085
3R	25961591	3R_25961591_SNP [dm3] 3R_30135869_SNP [dm6]	C	G	4.071e^-4	0.982	NON_SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12383919	3L_12383919_SNP [dm3] 3L_12390819_SNP [dm6]	C	A	4.075e^-4	0.982	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8101853	3L_8101853_SNP [dm3] 3L_8108753_SNP [dm6]	T	C	4.090e^-4	0.982	UTR_3_PRIME Ect4 UPSTREAM fan DOWNSTREAM Ect4	TF binding site mE1_TFBS_bab1
2L	10415154	2L_10415154_SNP [dm3] 2L_10415154_SNP [dm6]	A	G	4.091e^-4	0.982	SYNONYMOUS_CODING Klp31E
2L	10415157	2L_10415157_SNP [dm3] 2L_10415157_SNP [dm6]	G	A	4.091e^-4	0.982	SYNONYMOUS_CODING Klp31E
X	8426730	X_8426730_DEL [dm3] X_8532697_DEL [dm6]	GAAAGAG	G	4.093e^-4	0.982	INTRON Nrg
2R	9236177	2R_9236177_SNP [dm3] 2R_13348672_SNP [dm6]	A	T	4.097e^-4	0.982	INTRON CR44206
2R	13121762	2R_13121762_SNP [dm3] 2R_17234257_SNP [dm6]	T	G	4.107e^-4	0.982	INTRON mbl
3R	26277814	3R_26277814_SNP [dm3] 3R_30452092_SNP [dm6]	G	A	4.111e^-4	0.982	INTRON aralar1
3L	19019237	3L_19019237_SNP [dm3] 3L_19026137_SNP [dm6]	G	A	4.113e^-4	0.982	INTRON nkd
3L	20189419	3L_20189419_DEL [dm3] 3L_20196319_DEL [dm6]	TCGGCC	T	4.126e^-4	0.982	INTRON CG42674
3L	20307374	3L_20307374_SNP [dm3] 3L_20314274_SNP [dm6]	A	G	4.145e^-4	0.982	DOWNSTREAM polo & 1 other INTRON alphaSnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17779292	3R_17779292_SNP [dm3] 3R_21953570_SNP [dm6]	C	G	4.151e^-4	0.982	INTRON Eip93F
3L	14009103	3L_14009103_SNP [dm3] 3L_14016003_SNP [dm6]	T	C	4.154e^-4	0.982	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22675786	3R_22675786_SNP [dm3] 3R_26850064_SNP [dm6]	G	A	4.156e^-4	0.982	INTRON Lerp
2R	11453740	2R_11453740_SNP [dm3] 2R_15566235_SNP [dm6]	T	C	4.158e^-4	0.982	UPSTREAM CG8195 DOWNSTREAM Flo1 INTERGENIC
X	15743260	X_15743260_SNP [dm3] X_15849227_SNP [dm6]	T	C	4.162e^-4	0.982	UTR_5_PRIME sun DOWNSTREAM UBL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	9448502	3L_9448502_SNP [dm3] 3L_9455402_SNP [dm6]	C	G	4.164e^-4	0.982	SYNONYMOUS_CODING phol UPSTREAM CG3552 DOWNSTREAM CG3437	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9449498	3L_9449498_SNP [dm3] 3L_9456398_SNP [dm6]	C	T	4.164e^-4	0.982	SYNONYMOUS_STOP CG3437 UTR_5_PRIME CG3552 UPSTREAM phol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	13790522	3R_13790522_SNP [dm3] 3R_17964800_SNP [dm6]	A	G	4.172e^-4	0.982	INTRON cpo
3R	21960815	3R_21960815_SNP [dm3] 3R_26135093_SNP [dm6]	T	G	4.173e^-4	0.982	NON_SYNONYMOUS_CODING CG6142
3L	5279262	3L_5279262_SNP [dm3] 3L_5286162_SNP [dm6]	A	G	4.190e^-4	0.982	INTERGENIC
2L	7562759	2L_7562759_SNP [dm3] 2L_7562759_SNP [dm6]	A	G	4.194e^-4	0.982	INTRON RapGAP1
3R	17972649	3R_17972649_SNP [dm3] 3R_22146927_SNP [dm6]	C	T	4.199e^-4	0.982	INTRON SKIP	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	2942370	2L_2942370_SNP [dm3] 2L_2942370_SNP [dm6]	G	A	4.203e^-4	0.982	INTRON lilli
2L	2186388	2L_2186388_SNP [dm3] 2L_2186388_SNP [dm6]	A	G	4.203e^-4	0.982	UPSTREAM tRNA:CR31946 DOWNSTREAM CR43751 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14920100	3R_14920100_SNP [dm3] 3R_19094378_SNP [dm6]	T	C	4.204e^-4	0.982	UPSTREAM ATPsyn-d & 1 other DOWNSTREAM mRpL55 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4208986	X_4208986_SNP [dm3] X_4314953_SNP [dm6]	T	C	4.204e^-4	0.982	NON_SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
X	4209131	X_4209131_SNP [dm3] X_4315098_SNP [dm6]	A	G	4.204e^-4	0.982	SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
2R	17795891	2R_17795891_SNP [dm3] 2R_21908386_SNP [dm6]	A	T	4.219e^-4	0.982	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13318390	3R_13318390_SNP [dm3] 3R_17492668_SNP [dm6]	A	G	4.221e^-4	0.982	INTRON Dscam3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19010204	3R_19010204_SNP [dm3] 3R_23184482_SNP [dm6]	C	A	4.234e^-4	0.982	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24775991	3R_24775991_INS [dm3] 3R_28950269_INS [dm6]	T	TCAT	4.236e^-4	0.982	INTRON CG14521
3R	24775995	3R_24775995_SNP [dm3] 3R_28950273_SNP [dm6]	T	C	4.236e^-4	0.982	INTRON CG14521
3R	13640234	3R_13640234_SNP [dm3] 3R_17814512_SNP [dm6]	A	C	4.237e^-4	0.982	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22248608	3L_22248608_SNP [dm3] 3L_22255508_SNP [dm6]	A	G	4.240e^-4	0.982	INTERGENIC
X	20741695	X_20741695_SNP [dm3] X_20870668_SNP [dm6]	C	A	4.261e^-4	0.982	INTRON shakB
X	20741783	X_20741783_SNP [dm3] X_20870756_SNP [dm6]	T	G	4.261e^-4	0.982	INTRON shakB
X	7067427	X_7067427_SNP [dm3] X_7173394_SNP [dm6]	T	C	4.280e^-4	0.982	INTRON CG9650 & 1 other
X	7067433	X_7067433_SNP [dm3] X_7173400_SNP [dm6]	A	C	4.280e^-4	0.982	INTRON CG9650 & 1 other
X	2448777	X_2448777_SNP [dm3] X_2554744_SNP [dm6]	G	A	4.281e^-4	0.982	INTRON Pdfr
2R	10465280	2R_10465280_SNP [dm3] 2R_14577775_SNP [dm6]	C	T	4.284e^-4	0.982	INTRON ttv
3R	13756349	3R_13756349_SNP [dm3] 3R_17930627_SNP [dm6]	T	C	4.285e^-4	0.982	INTRON cpo
X	10977868	X_10977868_SNP [dm3] X_11083835_SNP [dm6]	G	A	4.293e^-4	0.982	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16765021	2L_16765021_DEL [dm3] 2L_16765021_DEL [dm6]	CTTTACAAGTACAACAAATA...	C	4.294e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs
2R	7173919	2R_7173919_SNP [dm3] 2R_11286414_SNP [dm6]	C	T	4.304e^-4	0.982	INTRON fbl6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18042804	2L_18042804_SNP [dm3] 2L_18042804_SNP [dm6]	G	T	4.306e^-4	0.982	INTRON rdo
3R	14877560	3R_14877560_SNP [dm3] 3R_19051838_SNP [dm6]	G	C	4.306e^-4	0.982	INTRON cdi
2R	9110905	2R_9110905_SNP [dm3] 2R_13223400_SNP [dm6]	A	T	4.309e^-4	0.982	UPSTREAM Fsn & 1 other DOWNSTREAM CR43918 INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
2L	2186916	2L_2186916_SNP [dm3] 2L_2186916_SNP [dm6]	T	A	4.318e^-4	0.982	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10367696	3L_10367696_SNP [dm3] 3L_10374596_SNP [dm6]	C	T	4.326e^-4	0.982	INTERGENIC
3R	10518973	3R_10518973_SNP [dm3] 3R_14693251_SNP [dm6]	A	T	4.331e^-4	0.982	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	12521016	2R_12521016_SNP [dm3] 2R_16633511_SNP [dm6]	T	G	4.345e^-4	0.982	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15261982	3L_15261982_SNP [dm3] 3L_15268882_SNP [dm6]	A	C	4.347e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9119864	3R_9119864_SNP [dm3] 3R_13294142_SNP [dm6]	A	G	4.351e^-4	0.982	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5856842	2L_5856842_SNP [dm3] 2L_5856842_SNP [dm6]	T	C	4.362e^-4	0.982	DOWNSTREAM TrissinR INTERGENIC
3L	21858162	3L_21858162_SNP [dm3] 3L_21865062_SNP [dm6]	C	G	4.362e^-4	0.982	INTRON mub
2L	2597681	2L_2597681_SNP [dm3] 2L_2597681_SNP [dm6]	A	C	4.365e^-4	0.982	DOWNSTREAM CR44790 INTERGENIC
3R	26686063	3R_26686063_SNP [dm3] 3R_30860341_SNP [dm6]	G	A	4.379e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26686068	3R_26686068_SNP [dm3] 3R_30860346_SNP [dm6]	C	A	4.379e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5844759	2L_5844759_SNP [dm3] 2L_5844759_SNP [dm6]	A	T	4.385e^-4	0.982	INTRON TrissinR
3L	18132408	3L_18132408_SNP [dm3] 3L_18139308_SNP [dm6]	G	A	4.395e^-4	0.982	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18143939	3L_18143939_SNP [dm3] 3L_18150839_SNP [dm6]	G	A	4.395e^-4	0.982	NON_SYNONYMOUS_CODING CG7330
X	2598179	X_2598179_SNP [dm3] X_2704146_SNP [dm6]	A	C	4.395e^-4	0.982	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	2727192	3L_2727192_INS [dm3] 3L_2727192_INS [dm6]	T	TT	4.405e^-4	0.982	INTRON Mrtf
2R	4896581	2R_4896581_SNP [dm3] 2R_9009076_SNP [dm6]	G	A	4.411e^-4	0.982	SYNONYMOUS_CODING CG8172 UTR_5_PRIME CG8172 INTRON CG8172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1247689	2L_1247689_SNP [dm3] 2L_1247689_SNP [dm6]	T	C	4.423e^-4	0.982	INTERGENIC
2L	772437	2L_772437_SNP [dm3] 2L_772437_SNP [dm6]	C	T	4.429e^-4	0.982	UPSTREAM CR44614 INTERGENIC
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	4.436e^-4	0.982	INTERGENIC
2R	12364760	2R_12364760_SNP [dm3] 2R_16477255_SNP [dm6]	T	A	4.440e^-4	0.982	INTERGENIC
3L	5373981	3L_5373981_SNP [dm3] 3L_5380881_SNP [dm6]	G	A	4.452e^-4	0.982	INTRON Ir64a
2L	8868929	2L_8868929_SNP [dm3] 2L_8868929_SNP [dm6]	C	A	4.458e^-4	0.982	DOWNSTREAM CR44414 INTERGENIC
3L	11625248	3L_11625248_SNP [dm3] 3L_11632148_SNP [dm6]	A	C	4.463e^-4	0.982	DOWNSTREAM CR45158 INTRON CG32091
2L	10681455	2L_10681455_DEL [dm3] 2L_10681455_DEL [dm6]	ACTTTTGCCAAAC...	A	4.472e^-4	0.982	UTR_3_PRIME CG17105 UPSTREAM CR44180 & 1 other DOWNSTREAM CG17105
2L	10681468	2L_10681468_INS [dm3] 2L_10681468_INS [dm6]	G	GAAGA	4.472e^-4	0.982	UTR_3_PRIME CG17105 UPSTREAM CR44180 & 1 other DOWNSTREAM CG17105
2L	7192465	2L_7192465_SNP [dm3] 2L_7192465_SNP [dm6]	T	C	4.474e^-4	0.982	INTRON CG4497
3R	13845653	3R_13845653_DEL [dm3] 3R_18019931_DEL [dm6]	TCCAAAAATAGATTAAATGG...	T	4.481e^-4	0.982	INTRON DNaseII
X	21448530	X_21448530_SNP [dm3] X_21577503_SNP [dm6]	G	T	4.484e^-4	0.982	INTERGENIC
X	8327720	X_8327720_INS [dm3] X_8433687_INS [dm6]	C	CAGAAGAATAGCGTTC...	4.489e^-4	0.982	DOWNSTREAM CG12125 & 1 other INTRON CG32712
X	8327738	X_8327738_SNP [dm3] X_8433705_SNP [dm6]	A	G	4.489e^-4	0.982	DOWNSTREAM CG12125 & 1 other INTRON CG32712
3L	14896172	3L_14896172_DEL [dm3] 3L_14903072_DEL [dm6]	GTGTGAGGTAGCCAAATG...	G	4.498e^-4	0.982	UPSTREAM DCX-EMAP INTERGENIC
3L	5537019	3L_5537019_SNP [dm3] 3L_5543919_SNP [dm6]	G	A	4.528e^-4	0.982	SYNONYMOUS_CODING CG10625 DOWNSTREAM CG10625 INTRON CG10625
X	12369163	X_12369163_SNP [dm3] X_12475130_SNP [dm6]	C	G	4.532e^-4	0.982	UPSTREAM CG42258 INTRON CG42258
2L	17381823	2L_17381823_SNP [dm3] 2L_17381823_SNP [dm6]	T	G	4.541e^-4	0.982	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	6251494	2R_6251494_SNP [dm3] 2R_10363989_SNP [dm6]	G	A	4.558e^-4	0.982	DOWNSTREAM Gr47a INTRON CG42732
3L	3104895	3L_3104895_DEL [dm3] 3L_3104895_DEL [dm6]	TTCAGAT	T	4.558e^-4	0.982	INTRON Cht7
3L	3810671	3L_3810671_SNP [dm3] 3L_3810671_SNP [dm6]	C	T	4.558e^-4	0.982	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	3810686	3L_3810686_SNP [dm3] 3L_3810686_SNP [dm6]	A	G	4.558e^-4	0.982	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2R	16859720	2R_16859720_SNP [dm3] 2R_20972215_SNP [dm6]	A	G	4.565e^-4	0.982	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7384555	3L_7384555_SNP [dm3] 3L_7391455_SNP [dm6]	T	G	4.568e^-4	0.982	NON_SYNONYMOUS_CODING CG8563
3L	6960258	3L_6960258_SNP [dm3] 3L_6967158_SNP [dm6]	G	C	4.572e^-4	0.982	SYNONYMOUS_CODING CG10064 DOWNSTREAM Mis12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5856787	2L_5856787_SNP [dm3] 2L_5856787_SNP [dm6]	A	G	4.577e^-4	0.982	DOWNSTREAM TrissinR INTERGENIC
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	4.585e^-4	0.982	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
3L	20212112	3L_20212112_SNP [dm3] 3L_20219012_SNP [dm6]	G	T	4.589e^-4	0.982	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3L	20212115	3L_20212115_SNP [dm3] 3L_20219015_SNP [dm6]	T	C	4.589e^-4	0.982	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
2L	18607673	2L_18607673_DEL [dm3] 2L_18607673_DEL [dm6]	AGGA	A	4.589e^-4	0.982	CODON_DELETION CG10333 DOWNSTREAM CG31789	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19273555	X_19273555_SNP [dm3] X_19379522_SNP [dm6]	G	A	4.613e^-4	0.982	INTRON kek5
2L	6469508	2L_6469508_SNP [dm3] 2L_6469508_SNP [dm6]	A	G	4.637e^-4	0.982	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18919722	3L_18919722_SNP [dm3] 3L_18926622_SNP [dm6]	A	T	4.640e^-4	0.982	DOWNSTREAM CG43049 INTRON CG32204
3L	10020359	3L_10020359_SNP [dm3] 3L_10027259_SNP [dm6]	A	G	4.654e^-4	0.982	INTRON dpr6
2L	2612183	2L_2612183_SNP [dm3] 2L_2612183_SNP [dm6]	T	A	4.661e^-4	0.982	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20239344	3L_20239344_SNP [dm3] 3L_20246244_SNP [dm6]	G	C	4.667e^-4	0.982	DOWNSTREAM CG6951 INTERGENIC
2L	18051422	2L_18051422_SNP [dm3] 2L_18051422_SNP [dm6]	A	G	4.678e^-4	0.982	INTRON rdo
3L	5399980	3L_5399980_SNP [dm3] 3L_5406880_SNP [dm6]	G	C	4.689e^-4	0.982	INTERGENIC
3L	5399981	3L_5399981_SNP [dm3] 3L_5406881_SNP [dm6]	C	T	4.689e^-4	0.982	INTERGENIC
X	10030128	X_10030128_SNP [dm3] X_10136095_SNP [dm6]	C	T	4.689e^-4	0.982	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1995068	2L_1995068_SNP [dm3] 2L_1995068_SNP [dm6]	C	T	4.690e^-4	0.982	INTERGENIC
X	16922833	X_16922833_SNP [dm3] X_17028800_SNP [dm6]	A	G	4.691e^-4	0.982	INTRON CG45002
3R	15322278	3R_15322278_SNP [dm3] 3R_19496556_SNP [dm6]	G	C	4.697e^-4	0.982	INTRON Dys
2L	3335454	2L_3335454_SNP [dm3] 2L_3335454_SNP [dm6]	A	T	4.700e^-4	0.982	UTR_3_PRIME E23 DOWNSTREAM CG15408
3L	11038097	3L_11038097_SNP [dm3] 3L_11044997_SNP [dm6]	C	G	4.703e^-4	0.982	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	16938359	2L_16938359_SNP [dm3] 2L_16938359_SNP [dm6]	G	T	4.728e^-4	0.982	INTERGENIC
2R	9236166	2R_9236166_SNP [dm3] 2R_13348661_SNP [dm6]	G	C	4.740e^-4	0.982	INTRON CR44206
2R	9236167	2R_9236167_SNP [dm3] 2R_13348662_SNP [dm6]	C	G	4.740e^-4	0.982	INTRON CR44206
3R	27761691	3R_27761691_SNP [dm3] 3R_31935969_SNP [dm6]	T	C	4.762e^-4	0.982	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4024642	2L_4024642_DEL [dm3] 2L_4024642_DEL [dm6]	GGTG	A	4.769e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9833426	2L_9833426_SNP [dm3] 2L_9833426_SNP [dm6]	T	C	4.770e^-4	0.982	INTRON nAChRalpha6
2R	9557978	2R_9557978_SNP [dm3] 2R_13670473_SNP [dm6]	C	T	4.776e^-4	0.982	SYNONYMOUS_CODING CG18368 INTRON fas
3L	18034997	3L_18034997_SNP [dm3] 3L_18041897_SNP [dm6]	C	A	4.785e^-4	0.982	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
2L	16915854	2L_16915854_SNP [dm3] 2L_16915854_SNP [dm6]	A	T	4.799e^-4	0.982	INTRON tweek
X	18731225	X_18731225_SNP [dm3] X_18837192_SNP [dm6]	C	T	4.804e^-4	0.982	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16410413	3L_16410413_SNP [dm3] 3L_16417313_SNP [dm6]	T	C	4.811e^-4	0.982	UPSTREAM CG4573 DOWNSTREAM Aats-tyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	9025495	X_9025495_SNP [dm3] X_9131462_SNP [dm6]	A	T	4.812e^-4	0.982	INTRON fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12835970	3L_12835970_INS [dm3] 3L_12842870_INS [dm6]	A	AGA	4.821e^-4	0.982	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24522372	3R_24522372_SNP [dm3] 3R_28696650_SNP [dm6]	A	G	4.854e^-4	0.982	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24522572	3R_24522572_SNP [dm3] 3R_28696850_SNP [dm6]	C	T	4.854e^-4	0.982	SYNONYMOUS_CODING htt DOWNSTREAM CG9990	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19400038	2L_19400038_SNP [dm3] 2L_19400038_SNP [dm6]	T	A	4.861e^-4	0.982	DOWNSTREAM Pax INTERGENIC	transposable element FlyBase
3L	7539284	3L_7539284_DEL [dm3] 3L_7546184_DEL [dm6]	TA	T	4.874e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9234826	2R_9234826_SNP [dm3] 2R_13347321_SNP [dm6]	T	A	4.882e^-4	0.982	INTRON CR44206
2L	7189529	2L_7189529_SNP [dm3] 2L_7189529_SNP [dm6]	A	T	4.882e^-4	0.982	UTR_5_PRIME CG4496 DOWNSTREAM CG4497	TF binding site BDTNP1_TFBS_dl
2L	7189530	2L_7189530_SNP [dm3] 2L_7189530_SNP [dm6]	C	T	4.882e^-4	0.982	START_GAINED CG4496 UTR_5_PRIME CG4496 DOWNSTREAM CG4497	TF binding site BDTNP1_TFBS_dl
3R	16711333	3R_16711333_INS [dm3] 3R_20885611_INS [dm6]	C	CTAGTTTC	4.884e^-4	0.982	INTERGENIC
2L	12092256	2L_12092256_SNP [dm3] 2L_12092256_SNP [dm6]	A	G	4.900e^-4	0.982	INTRON Pex19 EXON CR44594	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	16192863	2L_16192863_SNP [dm3] 2L_16192863_SNP [dm6]	T	A	4.916e^-4	0.982	INTERGENIC
3R	23063374	3R_23063374_SNP [dm3] 3R_27237652_SNP [dm6]	A	T	4.929e^-4	0.982	NON_SYNONYMOUS_CODING CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12723959	3R_12723959_SNP [dm3] 3R_16898237_SNP [dm6]	A	G	4.935e^-4	0.982	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	13918120	2L_13918120_SNP [dm3] 2L_13918120_SNP [dm6]	A	C	4.941e^-4	0.982	INTRON Ance-3
X	16844362	X_16844362_SNP [dm3] X_16950329_SNP [dm6]	C	T	4.978e^-4	0.982	INTRON RhoGAP15B
2R	13014912	2R_13014912_SNP [dm3] 2R_17127407_SNP [dm6]	T	C	4.979e^-4	0.982	UPSTREAM CG15605 INTERGENIC
3R	12040987	3R_12040987_SNP [dm3] 3R_16215265_SNP [dm6]	T	A	4.985e^-4	0.982	DOWNSTREAM CR45641 INTERGENIC
2L	4093697	2L_4093697_SNP [dm3] 2L_4093697_SNP [dm6]	C	A	4.992e^-4	0.982	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	13640196	3R_13640196_SNP [dm3] 3R_17814474_SNP [dm6]	A	T	4.995e^-4	0.982	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13640203	3R_13640203_SNP [dm3] 3R_17814481_SNP [dm6]	C	T	4.995e^-4	0.982	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20524897	2L_20524897_INS [dm3] 2L_20524897_INS [dm6]	A	AACAA	4.997e^-4	0.982	INTERGENIC
2L	21862174	2L_21862174_SNP [dm3] 2L_21862174_SNP [dm6]	T	C	5.002e^-4	0.982	INTRON CR44917
2L	5702117	2L_5702117_MNP [dm3] 2L_5702117_MNP [dm6]	GGTT	AACA	5.030e^-4	0.982	INTERGENIC
2L	18314674	2L_18314674_SNP [dm3] 2L_18314674_SNP [dm6]	A	G	5.031e^-4	0.982	UPSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3657322	2L_3657322_SNP [dm3] 2L_3657322_SNP [dm6]	G	T	5.052e^-4	0.982	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
2R	7068941	2R_7068941_SNP [dm3] 2R_11181436_SNP [dm6]	C	G	5.058e^-4	0.982	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7068960	2R_7068960_SNP [dm3] 2R_11181455_SNP [dm6]	G	C	5.058e^-4	0.982	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10841369	2R_10841369_SNP [dm3] 2R_14953864_SNP [dm6]	A	T	5.065e^-4	0.982	INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5967172	2L_5967172_SNP [dm3] 2L_5967172_SNP [dm6]	G	A	5.068e^-4	0.982	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11871368	2L_11871368_SNP [dm3] 2L_11871368_SNP [dm6]	A	G	5.080e^-4	0.982	INTRON Pde1c
2L	11871378	2L_11871378_SNP [dm3] 2L_11871378_SNP [dm6]	C	G	5.080e^-4	0.982	INTRON Pde1c
X	16840856	X_16840856_SNP [dm3] X_16946823_SNP [dm6]	T	C	5.084e^-4	0.982	INTRON RhoGAP15B	TF binding site mE1_TFBS_zfh1
X	16844610	X_16844610_SNP [dm3] X_16950577_SNP [dm6]	G	T	5.084e^-4	0.982	INTRON RhoGAP15B
2R	14476111	2R_14476111_SNP [dm3] 2R_18588606_SNP [dm6]	G	T	5.128e^-4	0.982	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
3R	25510152	3R_25510152_SNP [dm3] 3R_29684430_SNP [dm6]	G	A	5.138e^-4	0.982	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7632316	2L_7632316_SNP [dm3] 2L_7632316_SNP [dm6]	A	C	5.139e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27761446	3R_27761446_SNP [dm3] 3R_31935724_SNP [dm6]	A	T	5.144e^-4	0.982	UTR_5_PRIME heph UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3444567	2L_3444567_SNP [dm3] 2L_3444567_SNP [dm6]	A	G	5.149e^-4	0.982	INTERGENIC
X	16141539	X_16141539_SNP [dm3] X_16247506_SNP [dm6]	T	C	5.151e^-4	0.982	INTERGENIC
X	4405552	X_4405552_SNP [dm3] X_4511519_SNP [dm6]	G	A	5.158e^-4	0.982	INTRON CR32773	silencer mE1_HDAC_PRE
X	4405569	X_4405569_SNP [dm3] X_4511536_SNP [dm6]	G	A	5.158e^-4	0.982	INTRON CR32773	silencer mE1_HDAC_PRE
3R	21622396	3R_21622396_SNP [dm3] 3R_25796674_SNP [dm6]	T	C	5.160e^-4	0.982	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11453412	2R_11453412_DEL [dm3] 2R_15565907_DEL [dm6]	AATGCTATTATATATAA...	A	5.165e^-4	0.982	UPSTREAM CG8195 DOWNSTREAM Flo1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18211771	3R_18211771_SNP [dm3] 3R_22386049_SNP [dm6]	C	T	5.167e^-4	0.982	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379
X	3869134	X_3869134_SNP [dm3] X_3975101_SNP [dm6]	T	C	5.182e^-4	0.982	INTERGENIC
2R	13014907	2R_13014907_SNP [dm3] 2R_17127402_SNP [dm6]	G	A	5.187e^-4	0.982	UPSTREAM CG15605 INTERGENIC
3L	3950439	3L_3950439_SNP [dm3] 3L_3950439_SNP [dm6]	C	T	5.201e^-4	0.982	DOWNSTREAM CG14984 INTERGENIC
X	21443436	X_21443436_DEL [dm3] X_21572409_DEL [dm6]	TT	T	5.215e^-4	0.982	INTERGENIC
3R	8929715	3R_8929715_DEL [dm3] 3R_13103993_DEL [dm6]	GC	G	5.224e^-4	0.982	INTRON timeout
3L	13174978	3L_13174978_SNP [dm3] 3L_13181878_SNP [dm6]	T	A	5.238e^-4	0.982	INTERGENIC
3L	15229161	3L_15229161_SNP [dm3] 3L_15236061_SNP [dm6]	T	C	5.253e^-4	0.982	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10225726	X_10225726_SNP [dm3] X_10331693_SNP [dm6]	C	G	5.270e^-4	0.982	UTR_5_PRIME CG15306
3R	18932639	3R_18932639_SNP [dm3] 3R_23106917_SNP [dm6]	T	C	5.280e^-4	0.982	INTRON CG13830
2L	9118584	2L_9118584_SNP [dm3] 2L_9118584_SNP [dm6]	G	T	5.297e^-4	0.982	UPSTREAM CR44617 INTERGENIC
3L	7820344	3L_7820344_INS [dm3] 3L_7827244_INS [dm6]	C	CAGCAAATCGTATTG...	5.309e^-4	0.982	UTR_5_PRIME Pdp1 INTRON Pdp1
3L	5240026	3L_5240026_SNP [dm3] 3L_5246926_SNP [dm6]	G	T	5.309e^-4	0.982	INTRON shep
3L	14147387	3L_14147387_SNP [dm3] 3L_14154287_SNP [dm6]	T	A	5.318e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14147394	3L_14147394_SNP [dm3] 3L_14154294_SNP [dm6]	C	T	5.318e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16867286	3L_16867286_SNP [dm3] 3L_16874186_SNP [dm6]	C	T	5.319e^-4	0.982	INTRON Lmpt
3R	12813060	3R_12813060_SNP [dm3] 3R_16987338_SNP [dm6]	T	C	5.320e^-4	0.982	UPSTREAM CG18622 INTRON CG18622
3R	12813064	3R_12813064_SNP [dm3] 3R_16987342_SNP [dm6]	T	A	5.320e^-4	0.982	UPSTREAM CG18622 INTRON CG18622
2R	5793909	2R_5793909_SNP [dm3] 2R_9906404_SNP [dm6]	G	A	5.324e^-4	0.982	INTRON FMRFa
X	12368104	X_12368104_SNP [dm3] X_12474071_SNP [dm6]	A	T	5.338e^-4	0.982	INTRON CG42258
3L	7216374	3L_7216374_SNP [dm3] 3L_7223274_SNP [dm6]	A	T	5.348e^-4	0.982	EXON CR45410	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5288482	2R_5288482_SNP [dm3] 2R_9400977_SNP [dm6]	G	A	5.359e^-4	0.982	UTR_3_PRIME wun UPSTREAM CG33774
2L	8713791	2L_8713791_SNP [dm3] 2L_8713791_SNP [dm6]	A	C	5.362e^-4	0.982	INTRON raw
3L	13168534	3L_13168534_SNP [dm3] 3L_13175434_SNP [dm6]	G	T	5.362e^-4	0.982	NON_SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_sens
3L	14526938	3L_14526938_INS [dm3] 3L_14533838_INS [dm6]	T	TT	5.362e^-4	0.982	INTRON bbg
3L	20074604	3L_20074604_SNP [dm3] 3L_20081504_SNP [dm6]	T	G	5.362e^-4	0.982	INTRON sNPF-R
3L	7882922	3L_7882922_SNP [dm3] 3L_7889822_SNP [dm6]	A	G	5.362e^-4	0.982	INTRON CG32365	TF binding site BDTNP1_TFBS_dl
X	16857946	X_16857946_SNP [dm3] X_16963913_SNP [dm6]	A	T	5.365e^-4	0.982	INTRON CG9086
X	5696301	X_5696301_INS [dm3] X_5802268_INS [dm6]	G	GACGAACGG	5.374e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21603914	3R_21603914_SNP [dm3] 3R_25778192_SNP [dm6]	C	G	5.381e^-4	0.982	NON_SYNONYMOUS_CODING CG4956 UPSTREAM CG17195
2L	20310912	2L_20310912_SNP [dm3] 2L_20310912_SNP [dm6]	T	A	5.394e^-4	0.982	UPSTREAM spir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9815783	2L_9815783_SNP [dm3] 2L_9815783_SNP [dm6]	T	A	5.400e^-4	0.982	INTRON nAChRalpha6
2L	1974066	2L_1974066_SNP [dm3] 2L_1974066_SNP [dm6]	C	A	5.404e^-4	0.982	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17105013	2R_17105013_SNP [dm3] 2R_21217508_SNP [dm6]	A	C	5.407e^-4	0.982	DOWNSTREAM ASPP INTRON CG15661
3L	13216666	3L_13216666_INS [dm3] 3L_13223566_INS [dm6]	T	TAATA	5.421e^-4	0.982	INTERGENIC
3L	13216682	3L_13216682_SNP [dm3] 3L_13223582_SNP [dm6]	G	T	5.421e^-4	0.982	INTERGENIC
3L	13216690	3L_13216690_SNP [dm3] 3L_13223590_SNP [dm6]	T	A	5.421e^-4	0.982	INTERGENIC
3L	13216691	3L_13216691_SNP [dm3] 3L_13223591_SNP [dm6]	T	A	5.421e^-4	0.982	INTERGENIC
3L	13216694	3L_13216694_SNP [dm3] 3L_13223594_SNP [dm6]	T	G	5.421e^-4	0.982	INTERGENIC
2L	11346121	2L_11346121_INS [dm3] 2L_11346121_INS [dm6]	A	AG	5.422e^-4	0.982	INTERGENIC
3R	14600902	3R_14600902_SNP [dm3] 3R_18775180_SNP [dm6]	G	A	5.424e^-4	0.982	INTRON CG7720
2R	19117765	2R_19117765_SNP [dm3] 2R_23230242_SNP [dm6]	T	C	5.428e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7068936	2R_7068936_SNP [dm3] 2R_11181431_SNP [dm6]	T	G	5.430e^-4	0.982	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9233718	2R_9233718_SNP [dm3] 2R_13346213_SNP [dm6]	G	A	5.434e^-4	0.982	INTRON CR44206
2L	1254817	2L_1254817_SNP [dm3] 2L_1254817_SNP [dm6]	T	G	5.440e^-4	0.982	INTERGENIC
2L	2411677	2L_2411677_SNP [dm3] 2L_2411677_SNP [dm6]	A	G	5.444e^-4	0.982	SYNONYMOUS_CODING CG18641	TF binding site mE1_TFBS_cad
2L	497125	2L_497125_SNP [dm3] 2L_497125_SNP [dm6]	C	T	5.470e^-4	0.982	INTRON ush	TF binding site mE1_TFBS_HSA
3L	6503553	3L_6503553_SNP [dm3] 3L_6510453_SNP [dm6]	A	T	5.481e^-4	0.982	INTRON sfl
3L	6503556	3L_6503556_SNP [dm3] 3L_6510456_SNP [dm6]	G	A	5.481e^-4	0.982	INTRON sfl
3L	15766748	3L_15766748_SNP [dm3] 3L_15773648_SNP [dm6]	A	T	5.482e^-4	0.982	INTERGENIC
3L	16702974	3L_16702974_SNP [dm3] 3L_16709874_SNP [dm6]	C	T	5.485e^-4	0.982	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7861939	3L_7861939_SNP [dm3] 3L_7868839_SNP [dm6]	G	C	5.486e^-4	0.982	UPSTREAM CG32365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	20050503	2R_20050503_SNP [dm3] 2R_24162980_SNP [dm6]	C	T	5.488e^-4	0.982	INTRON CG3328
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	5.493e^-4	0.982	DOWNSTREAM CG9173 INTRON Ptp61F
3L	13057760	3L_13057760_SNP [dm3] 3L_13064660_SNP [dm6]	C	G	5.496e^-4	0.982	DOWNSTREAM CG34429 INTERGENIC
3L	18167084	3L_18167084_SNP [dm3] 3L_18173984_SNP [dm6]	G	C	5.496e^-4	0.982	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2448650	X_2448650_SNP [dm3] X_2554617_SNP [dm6]	T	A	5.496e^-4	0.982	INTRON Pdfr
2L	12375243	2L_12375243_SNP [dm3] 2L_12375243_SNP [dm6]	A	G	5.499e^-4	0.982	INTRON bru-2
3R	5917543	3R_5917543_SNP [dm3] 3R_10091821_SNP [dm6]	G	A	5.515e^-4	0.982	DOWNSTREAM mir-317 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16920072	X_16920072_SNP [dm3] X_17026039_SNP [dm6]	A	G	5.553e^-4	0.982	INTRON CG45002
X	16920140	X_16920140_SNP [dm3] X_17026107_SNP [dm6]	T	C	5.553e^-4	0.982	INTRON CG45002
2R	15400867	2R_15400867_SNP [dm3] 2R_19513362_SNP [dm6]	G	A	5.559e^-4	0.982	SYNONYMOUS_CODING Ir56d
3L	10456181	3L_10456181_SNP [dm3] 3L_10463081_SNP [dm6]	C	T	5.567e^-4	0.982	UTR_5_PRIME Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16842407	X_16842407_SNP [dm3] X_16948374_SNP [dm6]	G	C	5.570e^-4	0.982	NON_SYNONYMOUS_CODING CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18459196	3L_18459196_SNP [dm3] 3L_18466096_SNP [dm6]	G	T	5.571e^-4	0.982	INTERGENIC
3R	11502731	3R_11502731_SNP [dm3] 3R_15677009_SNP [dm6]	C	T	5.573e^-4	0.982	INTRON pxb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	5.574e^-4	0.982	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21995580	3R_21995580_SNP [dm3] 3R_26169858_SNP [dm6]	G	A	5.580e^-4	0.982	UPSTREAM CG31323 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4902022	2L_4902022_SNP [dm3] 2L_4902022_SNP [dm6]	A	T	5.603e^-4	0.982	SPLICE_SITE_REGION CG3036 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13106278	2R_13106278_SNP [dm3] 2R_17218773_SNP [dm6]	C	T	5.605e^-4	0.982	INTRON mbl
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	5.617e^-4	0.982	INTRON sff
X	22194167	X_22194167_SNP [dm3] X_22792331_SNP [dm6]	A	G	5.618e^-4	0.982	INTRON CR44997
X	11437299	X_11437299_SNP [dm3] X_11543266_SNP [dm6]	C	T	5.620e^-4	0.982	INTRON Drak	TF binding site mE1_TFBS_HSA
2L	5372725	2L_5372725_SNP [dm3] 2L_5372725_SNP [dm6]	C	T	5.630e^-4	0.982	INTERGENIC
X	15333342	X_15333342_SNP [dm3] X_15439309_SNP [dm6]	G	T	5.635e^-4	0.982	INTRON Cngl
2L	1751831	2L_1751831_SNP [dm3] 2L_1751831_SNP [dm6]	A	G	5.636e^-4	0.982	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23380771	3R_23380771_INS [dm3] 3R_27555049_INS [dm6]	G	GA	5.658e^-4	0.982	INTRON Klp98A
3L	7820490	3L_7820490_SNP [dm3] 3L_7827390_SNP [dm6]	T	C	5.664e^-4	0.982	INTRON Pdp1
3L	6011592	3L_6011592_SNP [dm3] 3L_6018492_SNP [dm6]	C	A	5.666e^-4	0.982	INTRON PVRAP
3L	12875566	3L_12875566_INS [dm3] 3L_12882466_INS [dm6]	C	CCC	5.670e^-4	0.982	INTERGENIC
3R	20113849	3R_20113849_SNP [dm3] 3R_24288127_SNP [dm6]	C	T	5.672e^-4	0.982	SYNONYMOUS_CODING CG6356 DOWNSTREAM CG34290
3R	14877846	3R_14877846_SNP [dm3] 3R_19052124_SNP [dm6]	G	A	5.688e^-4	0.982	INTRON cdi
X	17219962	X_17219962_SNP [dm3] X_17325929_SNP [dm6]	T	A	5.688e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5211064	3L_5211064_SNP [dm3] 3L_5217964_SNP [dm6]	C	A	5.694e^-4	0.982	INTRON shep
3R	16711375	3R_16711375_SNP [dm3] 3R_20885653_SNP [dm6]	G	T	5.698e^-4	0.982	INTERGENIC
2R	18068289	2R_18068289_SNP [dm3] 2R_22180784_SNP [dm6]	G	A	5.699e^-4	0.982	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_prd
2R	18068320	2R_18068320_SNP [dm3] 2R_22180815_SNP [dm6]	T	C	5.699e^-4	0.982	INTRON CG11170 & 1 other
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	5.704e^-4	0.982	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5283565	3L_5283565_SNP [dm3] 3L_5290465_SNP [dm6]	C	A	5.724e^-4	0.982	INTERGENIC
2R	8921153	2R_8921153_SNP [dm3] 2R_13033648_SNP [dm6]	T	A	5.727e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13322316	X_13322316_INS [dm3] X_13428283_INS [dm6]	T	TATGAAATATATCTTAAAGG...	5.729e^-4	0.982	INTERGENIC
X	13340868	X_13340868_SNP [dm3] X_13446835_SNP [dm6]	G	T	5.764e^-4	0.982	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11218298	X_11218298_SNP [dm3] X_11324265_SNP [dm6]	T	C	5.765e^-4	0.982	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	7098573	X_7098573_SNP [dm3] X_7204540_SNP [dm6]	G	A	5.773e^-4	0.982	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16839256	2R_16839256_SNP [dm3] 2R_20951751_SNP [dm6]	G	A	5.780e^-4	0.982	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	14297728	3R_14297728_SNP [dm3] 3R_18472006_SNP [dm6]	T	C	5.818e^-4	0.982	INTRON fru
3R	22491152	3R_22491152_DEL [dm3] 3R_26665430_DEL [dm6]	CAAC	C	5.820e^-4	0.982	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2R	8723186	2R_8723186_SNP [dm3] 2R_12835681_SNP [dm6]	C	T	5.821e^-4	0.982	INTERGENIC
3L	11550800	3L_11550800_SNP [dm3] 3L_11557700_SNP [dm6]	T	C	5.824e^-4	0.982	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9094143	2R_9094143_SNP [dm3] 2R_13206638_SNP [dm6]	A	C	5.825e^-4	0.982	UPSTREAM FLASH & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13988227	3R_13988227_SNP [dm3] 3R_18162505_SNP [dm6]	C	A	5.843e^-4	0.982	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_HSA
2R	12295214	2R_12295214_SNP [dm3] 2R_16407709_SNP [dm6]	G	A	5.845e^-4	0.982	INTRON Sema-2b
3R	14112135	3R_14112135_SNP [dm3] 3R_18286413_SNP [dm6]	A	G	5.858e^-4	0.982	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
2L	20863427	2L_20863427_SNP [dm3] 2L_20863427_SNP [dm6]	A	T	5.863e^-4	0.982	EXON CR9337
2L	1885877	2L_1885877_SNP [dm3] 2L_1885877_SNP [dm6]	C	T	5.907e^-4	0.982	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3536023	2L_3536023_SNP [dm3] 2L_3536023_SNP [dm6]	C	T	5.913e^-4	0.982	INTERGENIC
2L	15995531	2L_15995531_SNP [dm3] 2L_15995531_SNP [dm6]	C	T	5.923e^-4	0.982	INTERGENIC
3R	19571845	3R_19571845_SNP [dm3] 3R_23746123_SNP [dm6]	A	T	5.927e^-4	0.982	INTRON Hmgcr	TF binding site mE1_TFBS_cad
2R	955274	2R_955274_SNP [dm3] 2R_5067769_SNP [dm6]	C	T	5.932e^-4	0.982	INTRON TpnC41C
X	5438697	X_5438697_SNP [dm3] X_5544664_SNP [dm6]	A	G	5.939e^-4	0.982	INTRON Vsx2
2R	16979863	2R_16979863_SNP [dm3] 2R_21092358_SNP [dm6]	A	T	5.954e^-4	0.982	UTR_5_PRIME CG34396
2L	11809609	2L_11809609_SNP [dm3] 2L_11809609_SNP [dm6]	T	A	5.959e^-4	0.982	UPSTREAM crol DOWNSTREAM CycY INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15541871	2L_15541871_DEL [dm3] 2L_15541871_DEL [dm6]	AAGTCTTCAGACGTACTTCC...	A	5.963e^-4	0.982	INTERGENIC
3L	16702598	3L_16702598_SNP [dm3] 3L_16709498_SNP [dm6]	C	G	5.970e^-4	0.982	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	2685974	X_2685974_SNP [dm3] X_2791941_SNP [dm6]	G	A	5.970e^-4	0.982	SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	10984469	X_10984469_SNP [dm3] X_11090436_SNP [dm6]	C	G	5.972e^-4	0.982	UTR_5_PRIME CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	12375241	2L_12375241_SNP [dm3] 2L_12375241_SNP [dm6]	G	A	5.984e^-4	0.982	INTRON bru-2
3R	19220114	3R_19220114_SNP [dm3] 3R_23394392_SNP [dm6]	C	T	5.995e^-4	0.982	INTERGENIC
2R	15798922	2R_15798922_INS [dm3] 2R_19911417_INS [dm6]	T	TA	5.996e^-4	0.982	EXON CR44573
X	9220509	X_9220509_SNP [dm3] X_9326476_SNP [dm6]	T	G	6.012e^-4	0.982	UTR_3_PRIME CG34449 DOWNSTREAM CG34449
3R	26357970	3R_26357970_SNP [dm3] 3R_30532248_SNP [dm6]	G	T	6.017e^-4	0.982	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6645431	X_6645431_SNP [dm3] X_6751398_SNP [dm6]	C	T	6.026e^-4	0.982	INTRON CG14439
2R	7172814	2R_7172814_SNP [dm3] 2R_11285309_SNP [dm6]	T	C	6.036e^-4	0.982	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
2L	9010239	2L_9010239_SNP [dm3] 2L_9010239_SNP [dm6]	T	C	6.036e^-4	0.982	UPSTREAM CG9568 INTERGENIC
2R	8455132	2R_8455132_SNP [dm3] 2R_12567627_SNP [dm6]	T	C	6.037e^-4	0.982	INTRON Cyp301a1
3R	25300186	3R_25300186_SNP [dm3] 3R_29474464_SNP [dm6]	A	T	6.055e^-4	0.982	INTRON Ptp99A
3L	11175069	3L_11175069_SNP [dm3] 3L_11181969_SNP [dm6]	A	T	6.065e^-4	0.982	INTRON GlcAT-P
X	16920070	X_16920070_SNP [dm3] X_17026037_SNP [dm6]	A	T	6.068e^-4	0.982	INTRON CG45002
X	11218313	X_11218313_SNP [dm3] X_11324280_SNP [dm6]	C	T	6.074e^-4	0.982	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	3906892	X_3906892_SNP [dm3] X_4012859_SNP [dm6]	T	C	6.078e^-4	0.982	INTERGENIC
2R	18074421	2R_18074421_SNP [dm3] 2R_22186916_SNP [dm6]	C	T	6.089e^-4	0.982	SYNONYMOUS_CODING Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10413595	3R_10413595_DEL [dm3] 3R_14587873_DEL [dm6]	CATTTGC	C	6.095e^-4	0.982	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17143824	3L_17143824_SNP [dm3] 3L_17150724_SNP [dm6]	T	C	6.096e^-4	0.982	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18888314	3L_18888314_SNP [dm3] 3L_18895214_SNP [dm6]	T	G	6.116e^-4	0.982	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3R	17248248	3R_17248248_SNP [dm3] 3R_21422526_SNP [dm6]	G	A	6.120e^-4	0.982	INTRON lbl
3L	20194316	3L_20194316_SNP [dm3] 3L_20201216_SNP [dm6]	T	G	6.122e^-4	0.982	SYNONYMOUS_CODING obst-F DOWNSTREAM CG42833 & 1 other
3L	20195965	3L_20195965_SNP [dm3] 3L_20202865_SNP [dm6]	C	G	6.122e^-4	0.982	INTRON CG7298	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12735871	X_12735871_SNP [dm3] X_12841838_SNP [dm6]	A	T	6.128e^-4	0.982	INTRON Pde9
2R	7068954	2R_7068954_SNP [dm3] 2R_11181449_SNP [dm6]	A	G	6.134e^-4	0.982	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	7500776	3R_7500776_SNP [dm3] 3R_11675054_SNP [dm6]	G	T	6.150e^-4	0.982	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715
3R	7500896	3R_7500896_SNP [dm3] 3R_11675174_SNP [dm6]	A	G	6.150e^-4	0.982	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6530965	3L_6530965_SNP [dm3] 3L_6537865_SNP [dm6]	G	A	6.151e^-4	0.982	INTRON sfl
2R	18422113	2R_18422113_SNP [dm3] 2R_22534608_SNP [dm6]	C	T	6.161e^-4	0.982	INTRON px
2L	11554512	2L_11554512_SNP [dm3] 2L_11554512_SNP [dm6]	C	T	6.182e^-4	0.982	INTERGENIC
3R	11270415	3R_11270415_SNP [dm3] 3R_15444693_SNP [dm6]	T	A	6.186e^-4	0.982	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3L	10843301	3L_10843301_SNP [dm3] 3L_10850201_SNP [dm6]	A	G	6.189e^-4	0.982	EXON CR45169	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	26278150	3R_26278150_SNP [dm3] 3R_30452428_SNP [dm6]	C	G	6.190e^-4	0.982	INTRON aralar1
3R	12953617	3R_12953617_SNP [dm3] 3R_17127895_SNP [dm6]	A	G	6.206e^-4	0.982	UPSTREAM CG17477 & 2 others INTRON CG31269
3R	19061884	3R_19061884_SNP [dm3] 3R_23236162_SNP [dm6]	A	C	6.207e^-4	0.982	INTRON CG4467
2L	12796597	2L_12796597_SNP [dm3] 2L_12796597_SNP [dm6]	C	T	6.208e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14048788	2L_14048788_SNP [dm3] 2L_14048788_SNP [dm6]	G	A	6.209e^-4	0.982	UTR_3_PRIME NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	15229103	3L_15229103_SNP [dm3] 3L_15236003_SNP [dm6]	G	A	6.210e^-4	0.982	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9885390	2L_9885390_SNP [dm3] 2L_9885390_SNP [dm6]	G	C	6.220e^-4	0.982	INTRON nAChRalpha6
3L	18136972	3L_18136972_SNP [dm3] 3L_18143872_SNP [dm6]	A	T	6.224e^-4	0.982	INTRON gk
2R	16427390	2R_16427390_SNP [dm3] 2R_20539885_SNP [dm6]	A	T	6.229e^-4	0.982	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	16867311	X_16867311_SNP [dm3] X_16973278_SNP [dm6]	G	A	6.229e^-4	0.982	SYNONYMOUS_CODING CG45002	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16864516	2R_16864516_SNP [dm3] 2R_20977011_SNP [dm6]	A	C	6.246e^-4	0.982	UPSTREAM CG9344 DOWNSTREAM CG15650 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7350719	2L_7350719_SNP [dm3] 2L_7350719_SNP [dm6]	T	A	6.246e^-4	0.982	INTRON Wnt6
3L	9652990	3L_9652990_SNP [dm3] 3L_9659890_SNP [dm6]	G	A	6.246e^-4	0.982	DOWNSTREAM CG33696 INTRON fry
2R	16623659	2R_16623659_SNP [dm3] 2R_20736154_SNP [dm6]	T	C	6.247e^-4	0.982	INTRON dpr
2L	18902038	2L_18902038_SNP [dm3] 2L_18902038_SNP [dm6]	T	C	6.257e^-4	0.982	INTERGENIC
3R	25960573	3R_25960573_SNP [dm3] 3R_30134851_SNP [dm6]	A	G	6.259e^-4	0.982	UPSTREAM Tpi DOWNSTREAM AdoR INTERGENIC
3R	13883739	3R_13883739_SNP [dm3] 3R_18058017_SNP [dm6]	T	G	6.260e^-4	0.982	INTERGENIC
3L	7441620	3L_7441620_SNP [dm3] 3L_7448520_SNP [dm6]	C	G	6.272e^-4	0.982	INTRON CG42458
3L	7441639	3L_7441639_SNP [dm3] 3L_7448539_SNP [dm6]	A	T	6.272e^-4	0.982	INTRON CG42458
2L	10571915	2L_10571915_SNP [dm3] 2L_10571915_SNP [dm6]	C	T	6.279e^-4	0.982	INTRON Trim9
3L	2912393	3L_2912393_SNP [dm3] 3L_2912393_SNP [dm6]	G	T	6.288e^-4	0.982	INTRON Shab
3L	17053261	3L_17053261_SNP [dm3] 3L_17060161_SNP [dm6]	C	T	6.288e^-4	0.982	UTR_3_PRIME Rbp6
2L	10349468	2L_10349468_SNP [dm3] 2L_10349468_SNP [dm6]	A	T	6.298e^-4	0.982	INTRON CG34367
3R	14149516	3R_14149516_DEL [dm3] 3R_18323794_DEL [dm6]	AC	A	6.298e^-4	0.982	INTRON CG31235
2L	11065608	2L_11065608_SNP [dm3] 2L_11065608_SNP [dm6]	G	A	6.309e^-4	0.982	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13103567	3L_13103567_SNP [dm3] 3L_13110467_SNP [dm6]	A	T	6.318e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14898738	3L_14898738_SNP [dm3] 3L_14905638_SNP [dm6]	C	T	6.325e^-4	0.982	INTRON DCX-EMAP
3L	14901984	3L_14901984_SNP [dm3] 3L_14908884_SNP [dm6]	C	T	6.325e^-4	0.982	INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	14909902	3L_14909902_SNP [dm3] 3L_14916802_SNP [dm6]	C	T	6.325e^-4	0.982	INTRON DCX-EMAP
3R	16443960	3R_16443960_SNP [dm3] 3R_20618238_SNP [dm6]	T	C	6.327e^-4	0.982	SYNONYMOUS_CODING CG5466	TF binding site mE1_TFBS_chinmo
3R	22831054	3R_22831054_SNP [dm3] 3R_27005332_SNP [dm6]	A	T	6.328e^-4	0.982	SYNONYMOUS_CODING CG6296 DOWNSTREAM CG6295 INTRON RYa-R
3R	3984295	3R_3984295_SNP [dm3] 3R_8158573_SNP [dm6]	A	T	6.334e^-4	0.982	INTRON grn
3L	2726580	3L_2726580_SNP [dm3] 3L_2726580_SNP [dm6]	T	C	6.340e^-4	0.982	INTRON Mrtf
3R	11738186	3R_11738186_SNP [dm3] 3R_15912464_SNP [dm6]	T	C	6.344e^-4	0.982	INTRON CG45105
2L	11815260	2L_11815260_SNP [dm3] 2L_11815260_SNP [dm6]	C	T	6.348e^-4	0.982	UTR_3_PRIME Pde1c DOWNSTREAM Pde1c
3L	14525122	3L_14525122_INS [dm3] 3L_14532022_INS [dm6]	A	AAATTTCTTTTAAAGTTACT...	6.349e^-4	0.982	INTRON bbg
2L	20623332	2L_20623332_SNP [dm3] 2L_20623332_SNP [dm6]	A	T	6.351e^-4	0.982	INTRON CR44909
2R	7068942	2R_7068942_SNP [dm3] 2R_11181437_SNP [dm6]	A	G	6.358e^-4	0.982	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9417953	3L_9417953_SNP [dm3] 3L_9424853_SNP [dm6]	G	A	6.364e^-4	0.982	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_cad
3L	9417956	3L_9417956_SNP [dm3] 3L_9424856_SNP [dm6]	A	T	6.364e^-4	0.982	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_cad
2R	9230673	2R_9230673_SNP [dm3] 2R_13343168_SNP [dm6]	G	T	6.369e^-4	0.982	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15045631	2L_15045631_SNP [dm3] 2L_15045631_SNP [dm6]	A	G	6.381e^-4	0.982	INTRON ck
X	9431550	X_9431550_SNP [dm3] X_9537517_SNP [dm6]	C	G	6.385e^-4	0.982	INTRON CG32700
2R	7269364	2R_7269364_SNP [dm3] 2R_11381859_SNP [dm6]	A	G	6.388e^-4	0.982	SYNONYMOUS_CODING Sod3
2R	7270233	2R_7270233_SNP [dm3] 2R_11382728_SNP [dm6]	A	G	6.388e^-4	0.982	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	7270327	2R_7270327_SNP [dm3] 2R_11382822_SNP [dm6]	G	A	6.388e^-4	0.982	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	7270649	2R_7270649_SNP [dm3] 2R_11383144_SNP [dm6]	T	C	6.388e^-4	0.982	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	25337030	3R_25337030_SNP [dm3] 3R_29511308_SNP [dm6]	T	G	6.389e^-4	0.982	INTERGENIC
3R	25337032	3R_25337032_SNP [dm3] 3R_29511310_SNP [dm6]	T	A	6.389e^-4	0.982	INTERGENIC
3R	25337034	3R_25337034_SNP [dm3] 3R_29511312_SNP [dm6]	C	G	6.389e^-4	0.982	INTERGENIC
3R	25337038	3R_25337038_DEL [dm3] 3R_29511316_DEL [dm6]	TGACATCAAAAGCTTACTTA...	T	6.389e^-4	0.982	INTERGENIC
3R	25337073	3R_25337073_SNP [dm3] 3R_29511351_SNP [dm6]	A	G	6.389e^-4	0.982	INTERGENIC
3R	25337080	3R_25337080_SNP [dm3] 3R_29511358_SNP [dm6]	A	G	6.389e^-4	0.982	INTERGENIC
3R	25337083	3R_25337083_SNP [dm3] 3R_29511361_SNP [dm6]	C	G	6.389e^-4	0.982	INTERGENIC
3R	25337086	3R_25337086_MNP [dm3] 3R_29511364_MNP [dm6]	GTG	CGT	6.389e^-4	0.982	INTERGENIC
3R	25337090	3R_25337090_DEL [dm3] 3R_29511368_DEL [dm6]	TCTA	G	6.389e^-4	0.982	INTERGENIC
3L	9357861	3L_9357861_SNP [dm3] 3L_9364761_SNP [dm6]	C	T	6.390e^-4	0.982	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6927842	3L_6927842_DEL [dm3] 3L_6934742_DEL [dm6]	TG	T	6.403e^-4	0.982	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
3L	6927861	3L_6927861_SNP [dm3] 3L_6934761_SNP [dm6]	C	T	6.403e^-4	0.982	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
3L	6927867	3L_6927867_SNP [dm3] 3L_6934767_SNP [dm6]	A	T	6.403e^-4	0.982	UTR_3_PRIME CG14820 DOWNSTREAM CR45415
X	5963198	X_5963198_SNP [dm3] X_6069165_SNP [dm6]	C	G	6.412e^-4	0.982	UTR_3_PRIME CG5928 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16135376	X_16135376_INS [dm3] X_16241343_INS [dm6]	A	AATGTGTAAA	6.422e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	4353643	3R_4353643_SNP [dm3] 3R_8527921_SNP [dm6]	C	A	6.434e^-4	0.982	DOWNSTREAM CG11741 INTERGENIC
3R	11860240	3R_11860240_SNP [dm3] 3R_16034518_SNP [dm6]	C	T	6.438e^-4	0.982	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20026593	3R_20026593_DEL [dm3] 3R_24200871_DEL [dm6]	CGCCACGGC	C	6.441e^-4	0.982	UTR_5_PRIME twin INTRON twin
2R	18408320	2R_18408320_SNP [dm3] 2R_22520815_SNP [dm6]	T	C	6.448e^-4	0.982	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8622330	X_8622330_SNP [dm3] X_8728297_SNP [dm6]	T	C	6.450e^-4	0.982	INTERGENIC
3L	10018414	3L_10018414_SNP [dm3] 3L_10025314_SNP [dm6]	C	T	6.463e^-4	0.982	INTRON dpr6
X	19436351	X_19436351_SNP [dm3] X_19542318_SNP [dm6]	T	C	6.474e^-4	0.982	INTRON CG32532
X	19616306	X_19616306_SNP [dm3] X_19722273_SNP [dm6]	A	T	6.485e^-4	0.982	INTRON CG12531	TF binding site mE1_TFBS_chinmo
X	19616307	X_19616307_SNP [dm3] X_19722274_SNP [dm6]	T	C	6.485e^-4	0.982	INTRON CG12531	TF binding site mE1_TFBS_chinmo
2R	4577480	2R_4577480_SNP [dm3] 2R_8689975_SNP [dm6]	G	T	6.488e^-4	0.982	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.962e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1536 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	11476595	2R_11476595_SNP [dm3] 2R_15589090_SNP [dm6]	C	T	4.638e^-7	0.294	INTERGENIC
2R	11476596	2R_11476596_SNP [dm3] 2R_15589091_SNP [dm6]	C	G	4.638e^-7	0.294	INTERGENIC
3L	4239785	3L_4239785_SNP [dm3] 3L_4239785_SNP [dm6]	T	C	4.796e^-7	0.294	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13595325	2L_13595325_SNP [dm3] 2L_13595325_SNP [dm6]	T	G	2.470e^-6	0.758	DOWNSTREAM CG9254 INTRON kuz
X	5262872	X_5262872_SNP [dm3] X_5368839_SNP [dm6]	G	A	2.817e^-6	0.758	INTRON SK
3L	4240014	3L_4240014_SNP [dm3] 3L_4240014_SNP [dm6]	T	A	3.608e^-6	0.758	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23875991	3R_23875991_SNP [dm3] 3R_28050269_SNP [dm6]	G	A	3.613e^-6	0.758	SYNONYMOUS_CODING CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	19623484	X_19623484_SNP [dm3] X_19729451_SNP [dm6]	A	G	3.844e^-6	0.758	UTR_3_PRIME CG12531
X	19626008	X_19626008_SNP [dm3] X_19731975_SNP [dm6]	G	A	3.844e^-6	0.758	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10451779	2R_10451779_SNP [dm3] 2R_14564274_SNP [dm6]	A	T	4.142e^-6	0.758	INTRON ttv
2L	9512037	2L_9512037_SNP [dm3] 2L_9512037_SNP [dm6]	T	G	4.533e^-6	0.758	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	11391296	2R_11391296_SNP [dm3] 2R_15503791_SNP [dm6]	A	G	5.051e^-6	0.774	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2R	19976578	2R_19976578_SNP [dm3] 2R_24089055_SNP [dm6]	C	T	5.994e^-6	0.848	SYNONYMOUS_CODING snama
2L	13278875	2L_13278875_SNP [dm3] 2L_13278875_SNP [dm6]	A	G	7.531e^-6	0.949	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23873667	3R_23873667_DEL [dm3] 3R_28047945_DEL [dm6]	AAAAG	A	7.745e^-6	0.949	INTRON CG34362
3L	3720223	3L_3720223_SNP [dm3] 3L_3720223_SNP [dm6]	T	C	9.186e^-6	1	INTRON CG32264
3L	5052477	3L_5052477_SNP [dm3] 3L_5052477_SNP [dm6]	G	C	1.110e^-5	1	INTRON Con
3L	622180	3L_622180_SNP [dm3] 3L_622180_SNP [dm6]	A	T	1.266e^-5	1	UTR_5_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	16011428	2L_16011428_SNP [dm3] 2L_16011428_SNP [dm6]	G	A	1.279e^-5	1	INTRON beat-Ic
X	20227240	X_20227240_SNP [dm3] X_20356213_SNP [dm6]	A	C	1.286e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20227254	X_20227254_SNP [dm3] X_20356227_SNP [dm6]	T	A	1.286e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19166705	X_19166705_SNP [dm3] X_19272672_SNP [dm6]	T	C	1.480e^-5	1	UTR_3_PRIME Vav DOWNSTREAM Vav & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	5344893	X_5344893_SNP [dm3] X_5450860_SNP [dm6]	A	T	1.508e^-5	1	INTRON SPR
2R	11391043	2R_11391043_SNP [dm3] 2R_15503538_SNP [dm6]	A	G	1.708e^-5	1	SYNONYMOUS_CODING Ir52b UPSTREAM Ir52c
2L	10251159	2L_10251159_SNP [dm3] 2L_10251159_SNP [dm6]	T	G	1.798e^-5	1	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7318042	2L_7318042_SNP [dm3] 2L_7318042_SNP [dm6]	A	T	1.878e^-5	1	INTERGENIC
2R	11391327	2R_11391327_SNP [dm3] 2R_15503822_SNP [dm6]	C	A	1.924e^-5	1	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2R	15291310	2R_15291310_SNP [dm3] 2R_19403805_SNP [dm6]	G	C	1.983e^-5	1	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad
X	10968367	X_10968367_SNP [dm3] X_11074334_SNP [dm6]	A	T	2.069e^-5	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	19189402	3R_19189402_SNP [dm3] 3R_23363680_SNP [dm6]	C	T	2.109e^-5	1	UPSTREAM CG4408 INTERGENIC
3L	7271891	3L_7271891_SNP [dm3] 3L_7278791_SNP [dm6]	T	C	2.113e^-5	1	INTRON unc-13-4A
3R	17011222	3R_17011222_SNP [dm3] 3R_21185500_SNP [dm6]	G	A	2.137e^-5	1	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16967517	2R_16967517_DEL [dm3] 2R_21080012_DEL [dm6]	TT	T	2.259e^-5	1	UPSTREAM Treh INTRON Treh
2L	13290360	2L_13290360_SNP [dm3] 2L_13290360_SNP [dm6]	C	G	2.269e^-5	1	UTR_5_PRIME CG31729 UPSTREAM CG31729 DOWNSTREAM Uvrag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10451749	2R_10451749_SNP [dm3] 2R_14564244_SNP [dm6]	A	G	2.275e^-5	1	INTRON ttv
2R	12542893	2R_12542893_SNP [dm3] 2R_16655388_SNP [dm6]	T	G	2.346e^-5	1	UTR_3_PRIME Picot UPSTREAM Nach
2L	10251177	2L_10251177_SNP [dm3] 2L_10251177_SNP [dm6]	G	C	2.432e^-5	1	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16573289	2L_16573289_SNP [dm3] 2L_16573289_SNP [dm6]	G	A	2.523e^-5	1	INTRON CG42389
2R	10954513	2R_10954513_DEL [dm3] 2R_15067008_DEL [dm6]	TA	T	2.833e^-5	1	INTERGENIC
2L	13278863	2L_13278863_SNP [dm3] 2L_13278863_SNP [dm6]	C	T	2.891e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17011224	3R_17011224_DEL [dm3] 3R_21185502_DEL [dm6]	ATTTA	A	2.988e^-5	1	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20227210	X_20227210_SNP [dm3] X_20356183_SNP [dm6]	T	C	3.060e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19976557	2R_19976557_SNP [dm3] 2R_24089034_SNP [dm6]	A	T	3.262e^-5	1	SYNONYMOUS_CODING snama
X	3220954	X_3220954_DEL [dm3] X_3326921_DEL [dm6]	CTC	C	3.503e^-5	1	INTRON CR44886 & 1 other
X	21316200	X_21316200_SNP [dm3] X_21445173_SNP [dm6]	A	G	3.606e^-5	1	INTRON CG42343
2L	10777410	2L_10777410_SNP [dm3] 2L_10777410_SNP [dm6]	A	C	3.622e^-5	1	INTRON CG31869
2R	17361230	2R_17361230_SNP [dm3] 2R_21473725_SNP [dm6]	G	A	3.625e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23886130	3R_23886130_SNP [dm3] 3R_28060408_SNP [dm6]	C	A	3.687e^-5	1	INTRON CG34362
3R	23886152	3R_23886152_SNP [dm3] 3R_28060430_SNP [dm6]	C	G	3.687e^-5	1	INTRON CG34362
3L	10894831	3L_10894831_SNP [dm3] 3L_10901731_SNP [dm6]	G	T	3.718e^-5	1	INTERGENIC
2L	2153190	2L_2153190_SNP [dm3] 2L_2153190_SNP [dm6]	T	G	3.850e^-5	1	INTRON AIF	TF binding site mE1_TFBS_cad
2R	17361237	2R_17361237_SNP [dm3] 2R_21473732_SNP [dm6]	G	T	3.943e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3618546	2R_3618546_SNP [dm3] 2R_7731041_SNP [dm6]	A	G	3.964e^-5	1	INTRON CG18812
2R	3618578	2R_3618578_SNP [dm3] 2R_7731073_SNP [dm6]	C	T	3.964e^-5	1	INTRON CG18812
2L	2130146	2L_2130146_SNP [dm3] 2L_2130146_SNP [dm6]	A	T	4.019e^-5	1	UPSTREAM CG4259 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	9012164	2R_9012164_SNP [dm3] 2R_13124659_SNP [dm6]	G	T	4.028e^-5	1	SYNONYMOUS_CODING CG13325
3L	5052469	3L_5052469_SNP [dm3] 3L_5052469_SNP [dm6]	G	A	4.206e^-5	1	INTRON Con
3L	9322303	3L_9322303_SNP [dm3] 3L_9329203_SNP [dm6]	A	G	4.436e^-5	1	INTERGENIC
2R	3618561	2R_3618561_SNP [dm3] 2R_7731056_SNP [dm6]	G	A	4.563e^-5	1	INTRON CG18812
3R	26460852	3R_26460852_SNP [dm3] 3R_30635130_SNP [dm6]	G	A	4.709e^-5	1	INTERGENIC
2L	9444907	2L_9444907_SNP [dm3] 2L_9444907_SNP [dm6]	C	T	4.804e^-5	1	INTRON numb
2R	8828568	2R_8828568_SNP [dm3] 2R_12941063_SNP [dm6]	A	T	4.807e^-5	1	SYNONYMOUS_CODING Mdr49 DOWNSTREAM Sans	TF binding site mE1_TFBS_chinmo
X	10968350	X_10968350_SNP [dm3] X_11074317_SNP [dm6]	A	T	4.870e^-5	1	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	3158454	3R_3158454_SNP [dm3] 3R_7332732_SNP [dm6]	A	T	5.008e^-5	1	DOWNSTREAM CR44337 INTERGENIC
X	6616092	X_6616092_SNP [dm3] X_6722059_SNP [dm6]	G	A	5.008e^-5	1	SYNONYMOUS_CODING CG3168
2R	2403849	2R_2403849_SNP [dm3] 2R_6516344_SNP [dm6]	G	C	5.072e^-5	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	5.072e^-5	1	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	5.072e^-5	1	INTRON snama
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	5.072e^-5	1	INTRON snama
2R	19975316	2R_19975316_SNP [dm3] 2R_24087793_SNP [dm6]	T	G	5.072e^-5	1	NON_SYNONYMOUS_CODING snama
2R	10460061	2R_10460061_SNP [dm3] 2R_14572556_SNP [dm6]	G	T	5.102e^-5	1	SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad
2R	10954511	2R_10954511_SNP [dm3] 2R_15067006_SNP [dm6]	G	A	5.143e^-5	1	INTERGENIC
2R	14658960	2R_14658960_SNP [dm3] 2R_18771455_SNP [dm6]	A	C	5.256e^-5	1	UPSTREAM Mctp INTRON Mctp
2R	8921642	2R_8921642_SNP [dm3] 2R_13034137_SNP [dm6]	A	G	5.335e^-5	1	INTERGENIC
2R	18536634	2R_18536634_SNP [dm3] 2R_22649129_SNP [dm6]	T	C	5.346e^-5	1	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10081202	3R_10081202_SNP [dm3] 3R_14255480_SNP [dm6]	A	C	5.421e^-5	1	UPSTREAM CG43179 INTRON Aats-met
2L	1237428	2L_1237428_SNP [dm3] 2L_1237428_SNP [dm6]	C	T	5.457e^-5	1	INTERGENIC
2R	19313138	2R_19313138_SNP [dm3] 2R_23425615_SNP [dm6]	T	A	5.511e^-5	1	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2R	19313220	2R_19313220_SNP [dm3] 2R_23425697_SNP [dm6]	G	A	5.583e^-5	1	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19313238	2R_19313238_SNP [dm3] 2R_23425715_SNP [dm6]	C	G	5.583e^-5	1	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5262886	X_5262886_DEL [dm3] X_5368853_DEL [dm6]	GG	G	5.616e^-5	1	INTRON SK
2R	17361185	2R_17361185_SNP [dm3] 2R_21473680_SNP [dm6]	A	T	5.655e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18186106	3L_18186106_SNP [dm3] 3L_18193006_SNP [dm6]	G	A	5.686e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18202737	3R_18202737_SNP [dm3] 3R_22377015_SNP [dm6]	A	T	5.701e^-5	1	SYNONYMOUS_CODING CG18596	TF binding site mE1_TFBS_sens
X	13257116	X_13257116_SNP [dm3] X_13363083_SNP [dm6]	T	A	5.803e^-5	1	INTRON Syt12
X	19623256	X_19623256_DEL [dm3] X_19729223_DEL [dm6]	CTAT	C	6.015e^-5	1	UTR_3_PRIME CG12531
X	19623263	X_19623263_DEL [dm3] X_19729230_DEL [dm6]	TA	T	6.015e^-5	1	UTR_3_PRIME CG12531
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	6.015e^-5	1	UTR_3_PRIME CG12531
X	17562282	X_17562282_SNP [dm3] X_17668249_SNP [dm6]	C	T	6.089e^-5	1	DOWNSTREAM CG12990 INTRON beta-Spec
X	17562288	X_17562288_SNP [dm3] X_17668255_SNP [dm6]	G	A	6.089e^-5	1	DOWNSTREAM CG12990 INTRON beta-Spec
3R	10677830	3R_10677830_SNP [dm3] 3R_14852108_SNP [dm6]	G	C	6.138e^-5	1	INTRON btsz	TF binding site BDTNP1_TFBS_prd
3L	6973178	3L_6973178_SNP [dm3] 3L_6980078_SNP [dm6]	C	T	6.369e^-5	1	UPSTREAM Galphai DOWNSTREAM CR32385 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16954525	3R_16954525_SNP [dm3] 3R_21128803_SNP [dm6]	C	A	6.825e^-5	1	SYNONYMOUS_CODING CG5793 DOWNSTREAM Obp93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4108905	X_4108905_DEL [dm3] X_4214872_DEL [dm6]	GAATAGTG	G	6.882e^-5	1	INTERGENIC
2R	19550959	2R_19550959_SNP [dm3] 2R_23663436_SNP [dm6]	G	A	6.897e^-5	1	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10776291	2L_10776291_SNP [dm3] 2L_10776291_SNP [dm6]	G	A	6.902e^-5	1	INTRON CG31869
X	21316317	X_21316317_SNP [dm3] X_21445290_SNP [dm6]	G	A	6.926e^-5	1	INTRON CG42343
2R	3523837	2R_3523837_SNP [dm3] 2R_7636332_SNP [dm6]	G	A	7.121e^-5	1	UPSTREAM CG43340 INTRON CG43340
2R	5816172	2R_5816172_SNP [dm3] 2R_9928667_SNP [dm6]	A	G	7.181e^-5	1	INTRON Mef2
3L	5052474	3L_5052474_SNP [dm3] 3L_5052474_SNP [dm6]	A	T	7.231e^-5	1	INTRON Con
2L	10835244	2L_10835244_SNP [dm3] 2L_10835244_SNP [dm6]	A	T	7.363e^-5	1	INTRON Nos
3R	7071263	3R_7071263_SNP [dm3] 3R_11245541_SNP [dm6]	A	C	7.465e^-5	1	SYNONYMOUS_CODING CG5214	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16948107	3L_16948107_SNP [dm3] 3L_16955007_SNP [dm6]	G	T	7.510e^-5	1	START_GAINED Nc73EF UTR_5_PRIME Nc73EF UPSTREAM Nc73EF
2R	3618523	2R_3618523_SNP [dm3] 2R_7731018_SNP [dm6]	T	C	7.686e^-5	1	INTRON CG18812
X	15544709	X_15544709_SNP [dm3] X_15650676_SNP [dm6]	C	A	7.705e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19623474	X_19623474_SNP [dm3] X_19729441_SNP [dm6]	C	T	7.824e^-5	1	UTR_3_PRIME CG12531
X	9506587	X_9506587_SNP [dm3] X_9612554_SNP [dm6]	T	C	7.846e^-5	1	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9506975	X_9506975_SNP [dm3] X_9612942_SNP [dm6]	C	G	7.846e^-5	1	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507020	X_9507020_INS [dm3] X_9612987_INS [dm6]	C	CTA	7.846e^-5	1	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507022	X_9507022_SNP [dm3] X_9612989_SNP [dm6]	G	C	7.846e^-5	1	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507027	X_9507027_SNP [dm3] X_9612994_SNP [dm6]	G	A	7.846e^-5	1	INTRON CG42797	TF binding site mE1_TFBS_cad
2L	13278641	2L_13278641_SNP [dm3] 2L_13278641_SNP [dm6]	T	C	8.005e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4139545	2R_4139545_SNP [dm3] 2R_8252040_SNP [dm6]	G	T	8.016e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16839286	2R_16839286_SNP [dm3] 2R_20951781_SNP [dm6]	A	C	8.051e^-5	1	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	27532330	3R_27532330_SNP [dm3] 3R_31706608_SNP [dm6]	T	C	8.053e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	10248736	2L_10248736_SNP [dm3] 2L_10248736_SNP [dm6]	A	T	8.076e^-5	1	INTRON bsk	TF binding site BDTNP1_TFBS_dl
2L	7287811	2L_7287811_SNP [dm3] 2L_7287811_SNP [dm6]	G	A	8.285e^-5	1	INTERGENIC
2L	10818988	2L_10818988_SNP [dm3] 2L_10818988_SNP [dm6]	G	A	8.287e^-5	1	UPSTREAM CG6508 INTRON Nos
2R	19976599	2R_19976599_SNP [dm3] 2R_24089076_SNP [dm6]	C	G	8.381e^-5	1	SYNONYMOUS_CODING snama
3R	23823749	3R_23823749_SNP [dm3] 3R_27998027_SNP [dm6]	T	C	8.441e^-5	1	INTERGENIC
2L	16501214	2L_16501214_SNP [dm3] 2L_16501214_SNP [dm6]	T	C	8.539e^-5	1	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	516680	3L_516680_SNP [dm3] 3L_516680_SNP [dm6]	A	G	8.562e^-5	1	INTRON klar
3L	9953347	3L_9953347_SNP [dm3] 3L_9960247_SNP [dm6]	A	T	8.856e^-5	1	INTRON CG34356
3R	5527884	3R_5527884_SNP [dm3] 3R_9702162_SNP [dm6]	G	C	8.921e^-5	1	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15815620	3R_15815620_SNP [dm3] 3R_19989898_SNP [dm6]	G	T	8.936e^-5	1	INTRON Hs6st
3L	16288158	3L_16288158_SNP [dm3] 3L_16295058_SNP [dm6]	G	A	8.968e^-5	1	SYNONYMOUS_CODING CG4962
2R	3618640	2R_3618640_INS [dm3] 2R_7731135_INS [dm6]	A	AA	9.108e^-5	1	INTRON CG18812
2L	12602291	2L_12602291_SNP [dm3] 2L_12602291_SNP [dm6]	G	C	9.202e^-5	1	INTRON nub
2L	13278741	2L_13278741_SNP [dm3] 2L_13278741_SNP [dm6]	G	A	9.218e^-5	1	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13278746	2L_13278746_SNP [dm3] 2L_13278746_SNP [dm6]	A	G	9.218e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13278758	2L_13278758_SNP [dm3] 2L_13278758_SNP [dm6]	T	A	9.218e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13278764	2L_13278764_SNP [dm3] 2L_13278764_SNP [dm6]	T	C	9.218e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13278776	2L_13278776_SNP [dm3] 2L_13278776_SNP [dm6]	G	A	9.218e^-5	1	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18076181	3L_18076181_DEL [dm3] 3L_18083081_DEL [dm6]	TTTA	ACG	9.279e^-5	1	INTRON CR43253	TF binding site mE1_TFBS_inv
2L	14120310	2L_14120310_SNP [dm3] 2L_14120310_SNP [dm6]	A	T	9.458e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14120311	2L_14120311_SNP [dm3] 2L_14120311_SNP [dm6]	A	C	9.458e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	443127	X_443127_SNP [dm3] X_549094_SNP [dm6]	T	C	9.535e^-5	1	INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	16678608	2R_16678608_SNP [dm3] 2R_20791103_SNP [dm6]	A	G	9.635e^-5	1	UTR_5_PRIME CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
X	540807	X_540807_SNP [dm3] X_646774_SNP [dm6]	T	G	9.766e^-5	1	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC
3L	12151537	3L_12151537_SNP [dm3] 3L_12158437_SNP [dm6]	G	T	9.825e^-5	1	INTRON CG9760	TF binding site mE1_TFBS_cad
2R	19479734	2R_19479734_SNP [dm3] 2R_23592211_SNP [dm6]	G	T	9.838e^-5	1	INTRON apt
3L	16948043	3L_16948043_INS [dm3] 3L_16954943_INS [dm6]	T	TTAGTCA	9.951e^-5	1	UTR_5_PRIME Nc73EF UPSTREAM Nc73EF
2R	17285258	2R_17285258_INS [dm3] 2R_21397753_INS [dm6]	T	TAT	1.003e^-4	1	INTRON Sdc
3L	5052489	3L_5052489_SNP [dm3] 3L_5052489_SNP [dm6]	G	A	1.014e^-4	1	INTRON Con
2R	16028629	2R_16028629_SNP [dm3] 2R_20141124_SNP [dm6]	A	T	1.021e^-4	1	INTERGENIC
3R	19189485	3R_19189485_SNP [dm3] 3R_23363763_SNP [dm6]	A	C	1.021e^-4	1	UPSTREAM CG4408 INTERGENIC
2R	16839256	2R_16839256_SNP [dm3] 2R_20951751_SNP [dm6]	G	A	1.025e^-4	1	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	9312511	3L_9312511_SNP [dm3] 3L_9319411_SNP [dm6]	T	C	1.044e^-4	1	INTERGENIC
3L	12910993	3L_12910993_SNP [dm3] 3L_12917893_SNP [dm6]	C	T	1.056e^-4	1	INTERGENIC
X	3258273	X_3258273_SNP [dm3] X_3364240_SNP [dm6]	C	G	1.068e^-4	1	INTERGENIC
2R	15275692	2R_15275692_SNP [dm3] 2R_19388187_SNP [dm6]	G	A	1.072e^-4	1	INTRON CG10081
2R	15275820	2R_15275820_INS [dm3] 2R_19388315_INS [dm6]	A	AA	1.072e^-4	1	INTRON CG10081
2R	17363627	2R_17363627_SNP [dm3] 2R_21476122_SNP [dm6]	T	A	1.075e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5071680	2L_5071680_SNP [dm3] 2L_5071680_SNP [dm6]	C	T	1.078e^-4	1	SYNONYMOUS_CODING RpL37A UPSTREAM CR45305 DOWNSTREAM qtc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16759914	2R_16759914_SNP [dm3] 2R_20872409_SNP [dm6]	A	G	1.090e^-4	1	INTRON Ipk1
3L	1582578	3L_1582578_SNP [dm3] 3L_1582578_SNP [dm6]	T	C	1.091e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9709168	2L_9709168_SNP [dm3] 2L_9709168_SNP [dm6]	A	G	1.110e^-4	1	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11134538	2R_11134538_SNP [dm3] 2R_15247033_SNP [dm6]	T	G	1.127e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1170053	2L_1170053_SNP [dm3] 2L_1170053_SNP [dm6]	G	C	1.134e^-4	1	UTR_5_PRIME Plap UPSTREAM CG31922 & 1 other DOWNSTREAM CG5118 INTRON Plap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19809861	3L_19809861_SNP [dm3] 3L_19816761_SNP [dm6]	C	T	1.143e^-4	1	SYNONYMOUS_CODING Fibp UPSTREAM cyc	TF binding site mE1_TFBS_sens
3L	3594127	3L_3594127_SNP [dm3] 3L_3594127_SNP [dm6]	A	G	1.145e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19313078	2R_19313078_SNP [dm3] 2R_23425555_SNP [dm6]	G	C	1.147e^-4	1	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
X	16724328	X_16724328_SNP [dm3] X_16830295_SNP [dm6]	G	T	1.147e^-4	1	INTRON CG13004
3L	2108153	3L_2108153_SNP [dm3] 3L_2108153_SNP [dm6]	C	T	1.152e^-4	1	INTRON sls
2R	5536130	2R_5536130_SNP [dm3] 2R_9648625_SNP [dm6]	T	G	1.157e^-4	1	INTRON Mmp2
3R	10881090	3R_10881090_SNP [dm3] 3R_15055368_SNP [dm6]	T	A	1.168e^-4	1	UTR_3_PRIME dpr9
2R	5536162	2R_5536162_SNP [dm3] 2R_9648657_SNP [dm6]	T	A	1.181e^-4	1	INTRON Mmp2
2R	5317769	2R_5317769_SNP [dm3] 2R_9430264_SNP [dm6]	T	C	1.192e^-4	1	INTRON Pdk
3L	4435768	3L_4435768_SNP [dm3] 3L_4435768_SNP [dm6]	A	G	1.206e^-4	1	UTR_3_PRIME nAChRbeta1 UPSTREAM CG15021
2R	16967221	2R_16967221_INS [dm3] 2R_21079716_INS [dm6]	A	AGGCAAATAACAAATTAAGA...	1.208e^-4	1	UPSTREAM Treh INTRON Treh
2R	4934811	2R_4934811_SNP [dm3] 2R_9047306_SNP [dm6]	T	G	1.229e^-4	1	INTRON CG13743
3R	15469392	3R_15469392_SNP [dm3] 3R_19643670_SNP [dm6]	G	T	1.231e^-4	1	SYNONYMOUS_CODING Vha13 UPSTREAM subdued	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10266856	2R_10266856_SNP [dm3] 2R_14379351_SNP [dm6]	T	A	1.258e^-4	1	INTRON Dh44-R1
2L	15803841	2L_15803841_SNP [dm3] 2L_15803841_SNP [dm6]	T	C	1.292e^-4	1	INTERGENIC
X	10967808	X_10967808_SNP [dm3] X_11073775_SNP [dm6]	A	G	1.310e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	21251801	3R_21251801_DEL [dm3] 3R_25426079_DEL [dm6]	ATTCCCACTACTTACAACAC...	A	1.318e^-4	1	INTRON Fur1
2R	8785170	2R_8785170_SNP [dm3] 2R_12897665_SNP [dm6]	A	G	1.320e^-4	1	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6406628	X_6406628_SNP [dm3] X_6512595_SNP [dm6]	A	G	1.330e^-4	1	INTRON CG42340
3L	16629770	3L_16629770_INS [dm3] 3L_16636670_INS [dm6]	C	CTC	1.331e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9322350	3L_9322350_SNP [dm3] 3L_9329250_SNP [dm6]	A	G	1.333e^-4	1	INTERGENIC
2L	1446166	2L_1446166_SNP [dm3] 2L_1446166_SNP [dm6]	A	C	1.334e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5302934	X_5302934_SNP [dm3] X_5408901_SNP [dm6]	A	C	1.337e^-4	1	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3L	7444689	3L_7444689_SNP [dm3] 3L_7451589_SNP [dm6]	C	T	1.361e^-4	1	SYNONYMOUS_CODING CG33278 INTRON CG42458
2R	6853963	2R_6853963_SNP [dm3] 2R_10966458_SNP [dm6]	T	G	1.380e^-4	1	INTERGENIC
2L	9387622	2L_9387622_SNP [dm3] 2L_9387622_SNP [dm6]	A	C	1.381e^-4	1	UTR_5_PRIME Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9012211	2R_9012211_SNP [dm3] 2R_13124706_SNP [dm6]	G	C	1.383e^-4	1	INTRON CG13325
2R	9012229	2R_9012229_SNP [dm3] 2R_13124724_SNP [dm6]	A	T	1.383e^-4	1	INTRON CG13325
2L	13278982	2L_13278982_SNP [dm3] 2L_13278982_SNP [dm6]	C	A	1.387e^-4	1	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad
3L	9953394	3L_9953394_SNP [dm3] 3L_9960294_SNP [dm6]	C	T	1.390e^-4	1	INTRON CG34356
2R	16759912	2R_16759912_SNP [dm3] 2R_20872407_SNP [dm6]	G	T	1.399e^-4	1	INTRON Ipk1
X	17073523	X_17073523_SNP [dm3] X_17179490_SNP [dm6]	A	T	1.403e^-4	1	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18944567	2R_18944567_SNP [dm3] 2R_23057044_SNP [dm6]	A	G	1.418e^-4	1	INTRON CG44252
2R	8528799	2R_8528799_SNP [dm3] 2R_12641294_SNP [dm6]	C	A	1.423e^-4	1	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5262978	X_5262978_SNP [dm3] X_5368945_SNP [dm6]	C	T	1.426e^-4	1	INTRON SK
X	17072267	X_17072267_SNP [dm3] X_17178234_SNP [dm6]	G	A	1.442e^-4	1	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17072275	X_17072275_SNP [dm3] X_17178242_SNP [dm6]	G	T	1.442e^-4	1	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9657908	2R_9657908_SNP [dm3] 2R_13770403_SNP [dm6]	T	G	1.443e^-4	1	INTRON Cpr50Ca
X	12103492	X_12103492_SNP [dm3] X_12209459_SNP [dm6]	A	T	1.450e^-4	1	INTRON Ten-a
2R	14588427	2R_14588427_SNP [dm3] 2R_18700922_SNP [dm6]	T	C	1.454e^-4	1	SYNONYMOUS_CODING Sik3	TF binding site mE1_TFBS_chinmo
2R	14588474	2R_14588474_SNP [dm3] 2R_18700969_SNP [dm6]	A	G	1.454e^-4	1	INTRON Sik3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16961874	2R_16961874_SNP [dm3] 2R_21074369_SNP [dm6]	G	A	1.458e^-4	1	INTRON Treh
2R	16965714	2R_16965714_SNP [dm3] 2R_21078209_SNP [dm6]	C	G	1.458e^-4	1	INTRON Treh
2L	19181056	2L_19181056_SNP [dm3] 2L_19181056_SNP [dm6]	T	G	1.462e^-4	1	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19181132	2L_19181132_SNP [dm3] 2L_19181132_SNP [dm6]	C	T	1.462e^-4	1	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17561180	X_17561180_SNP [dm3] X_17667147_SNP [dm6]	T	C	1.464e^-4	1	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5052502	3L_5052502_SNP [dm3] 3L_5052502_SNP [dm6]	A	T	1.478e^-4	1	INTRON Con
3L	19808739	3L_19808739_DEL [dm3] 3L_19815639_DEL [dm6]	TG	T	1.479e^-4	1	DOWNSTREAM Fibp INTRON cyc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19809079	3L_19809079_DEL [dm3] 3L_19815979_DEL [dm6]	AGCAACT	A	1.479e^-4	1	UPSTREAM cyc DOWNSTREAM Fibp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24293656	3R_24293656_SNP [dm3] 3R_28467934_SNP [dm6]	G	C	1.494e^-4	1	INTRON beat-VI
2R	12645541	2R_12645541_SNP [dm3] 2R_16758036_SNP [dm6]	C	A	1.496e^-4	1	SYNONYMOUS_CODING unc-104
2R	16590099	2R_16590099_SNP [dm3] 2R_20702594_SNP [dm6]	T	A	1.496e^-4	1	INTRON dpr
X	3856724	X_3856724_SNP [dm3] X_3962691_SNP [dm6]	C	T	1.503e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10460415	2R_10460415_SNP [dm3] 2R_14572910_SNP [dm6]	T	A	1.509e^-4	1	INTRON ttv & 1 other
2L	20938072	2L_20938072_SNP [dm3] 2L_20938072_SNP [dm6]	A	T	1.518e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17968101	2R_17968101_SNP [dm3] 2R_22080596_SNP [dm6]	G	A	1.533e^-4	1	UPSTREAM Synj INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2323848	X_2323848_SNP [dm3] X_2429815_SNP [dm6]	A	T	1.543e^-4	1	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	22817819	3R_22817819_SNP [dm3] 3R_26992097_SNP [dm6]	C	T	1.555e^-4	1	INTERGENIC
2L	7533737	2L_7533737_SNP [dm3] 2L_7533737_SNP [dm6]	T	C	1.556e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1674621	2L_1674621_SNP [dm3] 2L_1674621_SNP [dm6]	C	T	1.558e^-4	1	INTRON chinmo
X	10968207	X_10968207_SNP [dm3] X_11074174_SNP [dm6]	C	G	1.573e^-4	1	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	19184714	3R_19184714_SNP [dm3] 3R_23358992_SNP [dm6]	G	A	1.598e^-4	1	DOWNSTREAM Sec13 INTRON RpS3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	16457825	2L_16457825_SNP [dm3] 2L_16457825_SNP [dm6]	A	G	1.599e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	16457826	2L_16457826_SNP [dm3] 2L_16457826_SNP [dm6]	T	C	1.599e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	3507751	2R_3507751_SNP [dm3] 2R_7620246_SNP [dm6]	C	T	1.602e^-4	1	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3R	16139394	3R_16139394_SNP [dm3] 3R_20313672_SNP [dm6]	G	A	1.611e^-4	1	INTRON CG42668
3R	16139508	3R_16139508_SNP [dm3] 3R_20313786_SNP [dm6]	T	C	1.611e^-4	1	INTRON CG42668
2L	13277314	2L_13277314_SNP [dm3] 2L_13277314_SNP [dm6]	C	A	1.615e^-4	1	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad
2R	11456678	2R_11456678_SNP [dm3] 2R_15569173_SNP [dm6]	C	T	1.615e^-4	1	START_GAINED CG30466 UTR_5_PRIME CG30466 & 1 other DOWNSTREAM Cdk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14560239	2R_14560239_SNP [dm3] 2R_18672734_SNP [dm6]	A	G	1.620e^-4	1	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7926446	2R_7926446_SNP [dm3] 2R_12038941_SNP [dm6]	A	C	1.623e^-4	1	UPSTREAM RpIII128 DOWNSTREAM 128up INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	19644392	2R_19644392_SNP [dm3] 2R_23756869_SNP [dm6]	T	C	1.626e^-4	1	SYNONYMOUS_CODING CG9850 INTRON CG9850
3L	17750316	3L_17750316_SNP [dm3] 3L_17757216_SNP [dm6]	T	C	1.640e^-4	1	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17362876	2L_17362876_SNP [dm3] 2L_17362876_SNP [dm6]	T	A	1.641e^-4	1	UPSTREAM CG31804 INTERGENIC
2L	11808502	2L_11808502_SNP [dm3] 2L_11808502_SNP [dm6]	A	T	1.643e^-4	1	UTR_5_PRIME crol INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
3R	6113728	3R_6113728_SNP [dm3] 3R_10288006_SNP [dm6]	G	T	1.666e^-4	1	INTRON CG43143
3L	12191065	3L_12191065_SNP [dm3] 3L_12197965_SNP [dm6]	G	T	1.667e^-4	1	NON_SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
2L	14077454	2L_14077454_SNP [dm3] 2L_14077454_SNP [dm6]	C	T	1.671e^-4	1	INTRON nAChRalpha5
2R	18584821	2R_18584821_SNP [dm3] 2R_22697316_SNP [dm6]	G	A	1.672e^-4	1	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2387917	3L_2387917_SNP [dm3] 3L_2387917_SNP [dm6]	G	A	1.672e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10442601	2R_10442601_SNP [dm3] 2R_14555096_SNP [dm6]	G	A	1.675e^-4	1	UPSTREAM CG43919 INTRON ttv
2L	15766885	2L_15766885_SNP [dm3] 2L_15766885_SNP [dm6]	T	C	1.686e^-4	1	SYNONYMOUS_CODING wek DOWNSTREAM CG3793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni mE1_TFBS_HSA
X	20466794	X_20466794_SNP [dm3] X_20595767_SNP [dm6]	A	G	1.688e^-4	1	INTRON RunxA
3R	13252871	3R_13252871_SNP [dm3] 3R_17427149_SNP [dm6]	T	A	1.699e^-4	1	INTRON CG5873
3R	27443507	3R_27443507_SNP [dm3] 3R_31617785_SNP [dm6]	C	T	1.705e^-4	1	UTR_3_PRIME CG1792 UPSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23865999	3R_23865999_SNP [dm3] 3R_28040277_SNP [dm6]	T	G	1.708e^-4	1	INTRON CG34362
2R	18791022	2R_18791022_SNP [dm3] 2R_22903499_SNP [dm6]	A	G	1.720e^-4	1	INTRON nahoda
X	14415767	X_14415767_SNP [dm3] X_14521734_SNP [dm6]	A	G	1.725e^-4	1	INTERGENIC
X	14415769	X_14415769_SNP [dm3] X_14521736_SNP [dm6]	T	A	1.725e^-4	1	INTERGENIC
3R	16139577	3R_16139577_SNP [dm3] 3R_20313855_SNP [dm6]	T	C	1.728e^-4	1	INTRON CG42668
2L	2158228	2L_2158228_SNP [dm3] 2L_2158228_SNP [dm6]	C	T	1.752e^-4	1	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11137483	X_11137483_SNP [dm3] X_11243450_SNP [dm6]	G	A	1.752e^-4	1	INTRON CG44422
2L	19565464	2L_19565464_SNP [dm3] 2L_19565464_SNP [dm6]	G	A	1.756e^-4	1	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
3R	3161915	3R_3161915_SNP [dm3] 3R_7336193_SNP [dm6]	A	G	1.769e^-4	1	INTERGENIC
2R	7060832	2R_7060832_SNP [dm3] 2R_11173327_SNP [dm6]	C	T	1.770e^-4	1	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	21311812	X_21311812_SNP [dm3] X_21440785_SNP [dm6]	G	A	1.772e^-4	1	UTR_3_PRIME CG42343 INTRON CG42343
2R	7060512	2R_7060512_SNP [dm3] 2R_11173007_SNP [dm6]	T	A	1.772e^-4	1	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	18959512	3L_18959512_SNP [dm3] 3L_18966412_SNP [dm6]	T	A	1.774e^-4	1	INTERGENIC
3L	2275192	3L_2275192_SNP [dm3] 3L_2275192_SNP [dm6]	T	C	1.776e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14120243	2L_14120243_SNP [dm3] 2L_14120243_SNP [dm6]	T	C	1.788e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14120244	2L_14120244_SNP [dm3] 2L_14120244_SNP [dm6]	T	A	1.788e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9365938	3R_9365938_SNP [dm3] 3R_13540216_SNP [dm6]	C	A	1.790e^-4	1	INTERGENIC
3R	18969849	3R_18969849_SNP [dm3] 3R_23144127_SNP [dm6]	A	T	1.856e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	22346735	3R_22346735_INS [dm3] 3R_26521013_INS [dm6]	C	CCA	1.857e^-4	1	INTRON plum EXON CR45226
3R	22362101	3R_22362101_SNP [dm3] 3R_26536379_SNP [dm6]	C	T	1.857e^-4	1	UTR_5_PRIME scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20829766	2L_20829766_SNP [dm3] 2L_20829766_SNP [dm6]	A	T	1.870e^-4	1	NON_SYNONYMOUS_CODING CG31673	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10967854	X_10967854_SNP [dm3] X_11073821_SNP [dm6]	C	A	1.873e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	3850948	3L_3850948_SNP [dm3] 3L_3850948_SNP [dm6]	C	A	1.880e^-4	1	INTRON Awh
2L	17039962	2L_17039962_SNP [dm3] 2L_17039962_SNP [dm6]	C	G	1.889e^-4	1	INTERGENIC
2R	16958641	2R_16958641_SNP [dm3] 2R_21071136_SNP [dm6]	A	G	1.896e^-4	1	INTRON CG10527 EXON CR44704	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16960757	2R_16960757_SNP [dm3] 2R_21073252_SNP [dm6]	C	A	1.896e^-4	1	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960976	2R_16960976_SNP [dm3] 2R_21073471_SNP [dm6]	A	T	1.896e^-4	1	UPSTREAM CG10527 & 1 other INTERGENIC
2R	16961096	2R_16961096_SNP [dm3] 2R_21073591_SNP [dm6]	G	C	1.896e^-4	1	UPSTREAM CG10527 & 1 other INTERGENIC
2R	16961422	2R_16961422_DEL [dm3] 2R_21073917_DEL [dm6]	CAAATGGT	C	1.896e^-4	1	UPSTREAM Treh INTERGENIC
2R	16961982	2R_16961982_SNP [dm3] 2R_21074477_SNP [dm6]	G	A	1.896e^-4	1	INTRON Treh
2R	16962143	2R_16962143_SNP [dm3] 2R_21074638_SNP [dm6]	C	A	1.896e^-4	1	INTRON Treh
2R	16963181	2R_16963181_SNP [dm3] 2R_21075676_SNP [dm6]	A	C	1.896e^-4	1	UTR_5_PRIME Treh UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16964538	2R_16964538_SNP [dm3] 2R_21077033_SNP [dm6]	C	T	1.896e^-4	1	UTR_5_PRIME Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16964878	2R_16964878_DEL [dm3] 2R_21077373_DEL [dm6]	TACTT	T	1.896e^-4	1	INTRON Treh
2R	16967194	2R_16967194_SNP [dm3] 2R_21079689_SNP [dm6]	A	T	1.896e^-4	1	UPSTREAM Treh INTRON Treh
2R	16967195	2R_16967195_INS [dm3] 2R_21079690_INS [dm6]	C	CAATT	1.896e^-4	1	UPSTREAM Treh INTRON Treh
2R	16967219	2R_16967219_SNP [dm3] 2R_21079714_SNP [dm6]	A	T	1.896e^-4	1	UPSTREAM Treh INTRON Treh
3L	11182213	3L_11182213_SNP [dm3] 3L_11189113_SNP [dm6]	G	C	1.905e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4239462	3L_4239462_SNP [dm3] 3L_4239462_SNP [dm6]	A	C	1.928e^-4	1	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13250504	2L_13250504_SNP [dm3] 2L_13250504_SNP [dm6]	T	C	1.937e^-4	1	DOWNSTREAM CG16820 INTERGENIC
2R	15448395	2R_15448395_SNP [dm3] 2R_19560890_SNP [dm6]	T	A	1.941e^-4	1	INTRON sm
2R	18842740	2R_18842740_SNP [dm3] 2R_22955217_SNP [dm6]	T	G	1.947e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8921223	2R_8921223_SNP [dm3] 2R_13033718_SNP [dm6]	T	A	1.979e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921230	2R_8921230_MNP [dm3] 2R_13033725_MNP [dm6]	TGG	ATT	1.979e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8921237	2R_8921237_SNP [dm3] 2R_13033732_SNP [dm6]	C	T	1.979e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8921242	2R_8921242_SNP [dm3] 2R_13033737_SNP [dm6]	T	A	1.979e^-4	1	INTERGENIC
2R	8921244	2R_8921244_SNP [dm3] 2R_13033739_SNP [dm6]	G	A	1.979e^-4	1	INTERGENIC
2R	8921257	2R_8921257_SNP [dm3] 2R_13033752_SNP [dm6]	C	A	1.979e^-4	1	INTERGENIC
2R	8921260	2R_8921260_SNP [dm3] 2R_13033755_SNP [dm6]	A	G	1.979e^-4	1	INTERGENIC
2R	2131756	2R_2131756_SNP [dm3] 2R_6244251_SNP [dm6]	G	A	1.987e^-4	1	INTRON Pld	transposable element FlyBase
2L	14077445	2L_14077445_SNP [dm3] 2L_14077445_SNP [dm6]	T	C	1.988e^-4	1	INTRON nAChRalpha5
2L	8058522	2L_8058522_SNP [dm3] 2L_8058522_SNP [dm6]	A	G	2.016e^-4	1	SYNONYMOUS_CODING poe
2L	8097761	2L_8097761_SNP [dm3] 2L_8097761_SNP [dm6]	A	G	2.018e^-4	1	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10518697	2R_10518697_SNP [dm3] 2R_14631192_SNP [dm6]	A	T	2.024e^-4	1	DOWNSTREAM CG10131 INTERGENIC
3R	27514760	3R_27514760_SNP [dm3] 3R_31689038_SNP [dm6]	T	C	2.025e^-4	1	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9355287	2R_9355287_SNP [dm3] 2R_13467782_SNP [dm6]	A	G	2.026e^-4	1	INTRON arr
3L	2127216	3L_2127216_SNP [dm3] 3L_2127216_SNP [dm6]	G	T	2.037e^-4	1	SYNONYMOUS_CODING zormin INTRON zormin
3R	14813353	3R_14813353_SNP [dm3] 3R_18987631_SNP [dm6]	G	C	2.052e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14813358	3R_14813358_SNP [dm3] 3R_18987636_SNP [dm6]	A	G	2.052e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20573478	3R_20573478_SNP [dm3] 3R_24747756_SNP [dm6]	A	G	2.054e^-4	1	SYNONYMOUS_CODING tok	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	7260886	2R_7260886_SNP [dm3] 2R_11373381_SNP [dm6]	G	T	2.057e^-4	1	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18959011	3L_18959011_SNP [dm3] 3L_18965911_SNP [dm6]	C	T	2.072e^-4	1	INTERGENIC
2R	10267034	2R_10267034_SNP [dm3] 2R_14379529_SNP [dm6]	T	A	2.081e^-4	1	INTRON Dh44-R1
2R	11476557	2R_11476557_DEL [dm3] 2R_15589052_DEL [dm6]	ATAATTGTCAA...	G	2.101e^-4	1	INTERGENIC
2R	2131178	2R_2131178_SNP [dm3] 2R_6243673_SNP [dm6]	C	T	2.102e^-4	1	INTRON Pld
2L	1171278	2L_1171278_SNP [dm3] 2L_1171278_SNP [dm6]	A	G	2.137e^-4	1	NON_SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12593463	2L_12593463_SNP [dm3] 2L_12593463_SNP [dm6]	G	A	2.144e^-4	1	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	21311791	X_21311791_SNP [dm3] X_21440764_SNP [dm6]	T	A	2.146e^-4	1	DOWNSTREAM CG42343 INTRON CG42343
X	21316716	X_21316716_SNP [dm3] X_21445689_SNP [dm6]	A	C	2.146e^-4	1	INTRON CG42343
2L	4076311	2L_4076311_SNP [dm3] 2L_4076311_SNP [dm6]	A	G	2.169e^-4	1	UPSTREAM CR44984 INTRON ed
2L	3627361	2L_3627361_SNP [dm3] 2L_3627361_SNP [dm6]	C	T	2.175e^-4	1	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
2L	1988868	2L_1988868_SNP [dm3] 2L_1988868_SNP [dm6]	G	A	2.188e^-4	1	UTR_3_PRIME Npc2a UPSTREAM CR42874	TF binding site mE1_TFBS_cad
2R	14658644	2R_14658644_SNP [dm3] 2R_18771139_SNP [dm6]	T	C	2.192e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2R	14658671	2R_14658671_SNP [dm3] 2R_18771166_SNP [dm6]	A	T	2.192e^-4	1	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
X	5302848	X_5302848_SNP [dm3] X_5408815_SNP [dm6]	G	C	2.194e^-4	1	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	2.217e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	3461005	2R_3461005_SNP [dm3] 2R_7573500_SNP [dm6]	T	A	2.220e^-4	1	SYNONYMOUS_CODING Vps13	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3461051	2R_3461051_SNP [dm3] 2R_7573546_SNP [dm6]	C	G	2.220e^-4	1	INTRON Vps13	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19565504	2L_19565504_DEL [dm3] 2L_19565504_DEL [dm6]	TT	T	2.242e^-4	1	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2L	15950895	2L_15950895_INS [dm3] 2L_15950895_INS [dm6]	G	GTATGTG	2.253e^-4	1	INTRON beat-Ib
X	443174	X_443174_SNP [dm3] X_549141_SNP [dm6]	C	T	2.263e^-4	1	INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	13250799	2L_13250799_SNP [dm3] 2L_13250799_SNP [dm6]	A	G	2.283e^-4	1	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
3L	2091710	3L_2091710_SNP [dm3] 3L_2091710_SNP [dm6]	C	A	2.292e^-4	1	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8746384	3L_8746384_SNP [dm3] 3L_8753284_SNP [dm6]	C	T	2.294e^-4	1	UPSTREAM Fhos INTERGENIC
3R	19745599	3R_19745599_SNP [dm3] 3R_23919877_SNP [dm6]	C	A	2.309e^-4	1	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7300558	3R_7300558_SNP [dm3] 3R_11474836_SNP [dm6]	G	A	2.323e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24275459	3R_24275459_SNP [dm3] 3R_28449737_SNP [dm6]	T	A	2.324e^-4	1	INTRON beat-VI
X	21316703	X_21316703_SNP [dm3] X_21445676_SNP [dm6]	T	A	2.326e^-4	1	INTRON CG42343
X	3417908	X_3417908_SNP [dm3] X_3523875_SNP [dm6]	C	G	2.328e^-4	1	INTRON CG32791
3L	3720208	3L_3720208_SNP [dm3] 3L_3720208_SNP [dm6]	G	C	2.335e^-4	1	INTRON CG32264
2L	14120287	2L_14120287_SNP [dm3] 2L_14120287_SNP [dm6]	A	T	2.337e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	2402449	2R_2402449_SNP [dm3] 2R_6514944_SNP [dm6]	G	T	2.351e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7510320	2L_7510320_SNP [dm3] 2L_7510320_SNP [dm6]	A	C	2.356e^-4	1	INTRON RapGAP1
2L	14120258	2L_14120258_SNP [dm3] 2L_14120258_SNP [dm6]	A	T	2.364e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13252246	2L_13252246_SNP [dm3] 2L_13252246_SNP [dm6]	T	C	2.370e^-4	1	NON_SYNONYMOUS_CODING CG31728
2L	7005786	2L_7005786_SNP [dm3] 2L_7005786_SNP [dm6]	G	A	2.378e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_hb
3L	10371900	3L_10371900_SNP [dm3] 3L_10378800_SNP [dm6]	G	C	2.382e^-4	1	INTERGENIC
X	2704954	X_2704954_SNP [dm3] X_2810921_SNP [dm6]	C	T	2.382e^-4	1	DOWNSTREAM CG12498 INTRON kirre
2R	16960955	2R_16960955_SNP [dm3] 2R_21073450_SNP [dm6]	A	C	2.385e^-4	1	UPSTREAM CG10527 & 1 other INTERGENIC
3R	17660128	3R_17660128_SNP [dm3] 3R_21834406_SNP [dm6]	A	T	2.395e^-4	1	DOWNSTREAM Gr93a INTERGENIC
3L	12136810	3L_12136810_INS [dm3] 3L_12143710_INS [dm6]	T	TTAT	2.400e^-4	1	DOWNSTREAM RhoGAP68F INTRON CG5642	TF binding site mE1_TFBS_cad
2L	19208853	2L_19208853_SNP [dm3] 2L_19208853_SNP [dm6]	C	T	2.422e^-4	1	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19213980	2L_19213980_SNP [dm3] 2L_19213980_SNP [dm6]	C	T	2.422e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11035425	3L_11035425_SNP [dm3] 3L_11042325_SNP [dm6]	A	T	2.430e^-4	1	INTRON CG43693	TF binding site mE1_TFBS_HSA
3L	16949708	3L_16949708_SNP [dm3] 3L_16956608_SNP [dm6]	T	A	2.444e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3920735	2R_3920735_SNP [dm3] 2R_8033230_SNP [dm6]	T	G	2.452e^-4	1	INTRON Optix
3L	6471144	3L_6471144_SNP [dm3] 3L_6478044_SNP [dm6]	T	C	2.462e^-4	1	INTRON CG42747
X	3205567	X_3205567_SNP [dm3] X_3311534_SNP [dm6]	C	G	2.462e^-4	1	INTRON dnc
2L	19383326	2L_19383326_SNP [dm3] 2L_19383326_SNP [dm6]	C	T	2.466e^-4	1	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
X	21933008	X_21933008_SNP [dm3] X_22531172_SNP [dm6]	C	T	2.469e^-4	1	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_sens
2R	1291692	2R_1291692_SNP [dm3] 2R_5404187_SNP [dm6]	A	G	2.494e^-4	1	INTERGENIC	transposable element FlyBase
2L	15783512	2L_15783512_SNP [dm3] 2L_15783512_SNP [dm6]	G	T	2.496e^-4	1	UPSTREAM CG18109 INTERGENIC
3L	12136837	3L_12136837_SNP [dm3] 3L_12143737_SNP [dm6]	A	C	2.499e^-4	1	SPLICE_SITE_REGION CG5642 DOWNSTREAM RhoGAP68F INTRON CG5642	TF binding site mE1_TFBS_cad
3L	3656592	3L_3656592_SNP [dm3] 3L_3656592_SNP [dm6]	A	G	2.508e^-4	1	INTERGENIC
3L	4033603	3L_4033603_INS [dm3] 3L_4033603_INS [dm6]	T	TCATTT	2.542e^-4	1	UTR_5_PRIME Gr64e UTR_3_PRIME Gr64d UPSTREAM Gr64e DOWNSTREAM CR45042 & 1 other
2R	16559828	2R_16559828_INS [dm3] 2R_20672323_INS [dm6]	T	TTT	2.568e^-4	1	INTRON CG30152	TF binding site mE1_TFBS_sens
X	5537719	X_5537719_SNP [dm3] X_5643686_SNP [dm6]	A	G	2.570e^-4	1	INTRON CG42492
2R	2403923	2R_2403923_SNP [dm3] 2R_6516418_SNP [dm6]	C	G	2.581e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11282489	3R_11282489_SNP [dm3] 3R_15456767_SNP [dm6]	A	G	2.582e^-4	1	INTRON AdamTS-A
3L	3109359	3L_3109359_SNP [dm3] 3L_3109359_SNP [dm6]	C	T	2.584e^-4	1	DOWNSTREAM CG45066 INTERGENIC
3L	4031723	3L_4031723_SNP [dm3] 3L_4031723_SNP [dm6]	G	A	2.584e^-4	1	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d & 1 other
3R	11151208	3R_11151208_SNP [dm3] 3R_15325486_SNP [dm6]	C	G	2.584e^-4	1	UTR_3_PRIME CG6236 DOWNSTREAM ear
3R	25180387	3R_25180387_SNP [dm3] 3R_29354665_SNP [dm6]	C	A	2.584e^-4	1	INTERGENIC
3R	25180390	3R_25180390_SNP [dm3] 3R_29354668_SNP [dm6]	C	G	2.584e^-4	1	INTERGENIC
3R	26070924	3R_26070924_SNP [dm3] 3R_30245202_SNP [dm6]	G	A	2.584e^-4	1	INTRON CG9733
3R	26070949	3R_26070949_SNP [dm3] 3R_30245227_SNP [dm6]	C	A	2.584e^-4	1	INTRON CG9733
2R	17363491	2R_17363491_SNP [dm3] 2R_21475986_SNP [dm6]	T	A	2.611e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17363567	2R_17363567_SNP [dm3] 2R_21476062_SNP [dm6]	C	T	2.611e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15755322	2L_15755322_SNP [dm3] 2L_15755322_SNP [dm6]	T	C	2.612e^-4	1	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
2R	12443576	2R_12443576_SNP [dm3] 2R_16556071_SNP [dm6]	A	T	2.634e^-4	1	SPLICE_SITE_REGION Syn2 SYNONYMOUS_CODING Syn2
3R	27478213	3R_27478213_SNP [dm3] 3R_31652491_SNP [dm6]	C	A	2.637e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
3R	27478216	3R_27478216_SNP [dm3] 3R_31652494_SNP [dm6]	C	T	2.637e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
3R	27484870	3R_27484870_SNP [dm3] 3R_31659148_SNP [dm6]	T	C	2.637e^-4	1	INTRON kek6	TF binding site mE1_TFBS_chinmo
3R	27488495	3R_27488495_SNP [dm3] 3R_31662773_SNP [dm6]	A	C	2.637e^-4	1	UTR_3_PRIME kek6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17676154	2R_17676154_SNP [dm3] 2R_21788649_SNP [dm6]	T	G	2.669e^-4	1	DOWNSTREAM lox2 INTERGENIC
3R	660072	3R_660072_SNP [dm3] 3R_4834350_SNP [dm6]	T	A	2.675e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18466082	3R_18466082_DEL [dm3] 3R_22640360_DEL [dm6]	AA	A	2.733e^-4	1	UPSTREAM loco INTRON CG45058	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	15955008	2L_15955008_SNP [dm3] 2L_15955008_SNP [dm6]	T	C	2.738e^-4	1	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
2R	3415929	2R_3415929_SNP [dm3] 2R_7528424_SNP [dm6]	T	G	2.748e^-4	1	INTRON Drat	TF binding site BDTNP1_TFBS_twi
3L	3720234	3L_3720234_SNP [dm3] 3L_3720234_SNP [dm6]	G	T	2.756e^-4	1	INTRON CG32264
2R	7060667	2R_7060667_SNP [dm3] 2R_11173162_SNP [dm6]	A	T	2.784e^-4	1	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	2108062	3L_2108062_SNP [dm3] 3L_2108062_SNP [dm6]	T	G	2.785e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
2R	8927641	2R_8927641_SNP [dm3] 2R_13040136_SNP [dm6]	C	T	2.785e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7634879	3L_7634879_SNP [dm3] 3L_7641779_SNP [dm6]	A	G	2.791e^-4	1	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	14927340	3R_14927340_SNP [dm3] 3R_19101618_SNP [dm6]	C	T	2.807e^-4	1	INTRON CG6040
2L	8736599	2L_8736599_SNP [dm3] 2L_8736599_SNP [dm6]	C	T	2.817e^-4	1	UPSTREAM raw INTRON raw
2R	16967672	2R_16967672_SNP [dm3] 2R_21080167_SNP [dm6]	C	T	2.827e^-4	1	UPSTREAM Treh INTRON Treh
2L	15955040	2L_15955040_SNP [dm3] 2L_15955040_SNP [dm6]	A	G	2.844e^-4	1	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
2R	4965555	2R_4965555_SNP [dm3] 2R_9078050_SNP [dm6]	G	T	2.848e^-4	1	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	17362215	2R_17362215_SNP [dm3] 2R_21474710_SNP [dm6]	A	T	2.861e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3341891	2L_3341891_SNP [dm3] 2L_3341891_SNP [dm6]	T	C	2.865e^-4	1	INTRON E23
3R	23867457	3R_23867457_SNP [dm3] 3R_28041735_SNP [dm6]	G	A	2.878e^-4	1	INTRON CG34362
2R	20240174	2R_20240174_SNP [dm3] 2R_24352651_SNP [dm6]	G	A	2.883e^-4	1	INTRON bs & 1 other	TF binding site mE1_TFBS_chinmo
2R	6857337	2R_6857337_INS [dm3] 2R_10969832_INS [dm6]	A	AGTCCA	2.885e^-4	1	INTERGENIC
X	10968244	X_10968244_SNP [dm3] X_11074211_SNP [dm6]	A	C	2.886e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
X	10968262	X_10968262_SNP [dm3] X_11074229_SNP [dm6]	G	A	2.886e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	7503748	3L_7503748_SNP [dm3] 3L_7510648_SNP [dm6]	G	T	2.910e^-4	1	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	18917849	3L_18917849_SNP [dm3] 3L_18924749_SNP [dm6]	A	G	2.921e^-4	1	SYNONYMOUS_CODING CG32204 UPSTREAM CG43049
3L	5020604	3L_5020604_SNP [dm3] 3L_5020604_SNP [dm6]	A	T	2.940e^-4	1	INTRON Con
2L	10777478	2L_10777478_SNP [dm3] 2L_10777478_SNP [dm6]	T	A	2.947e^-4	1	INTRON CG31869
2R	16970236	2R_16970236_SNP [dm3] 2R_21082731_SNP [dm6]	A	G	2.948e^-4	1	INTRON Treh
2L	7179543	2L_7179543_SNP [dm3] 2L_7179543_SNP [dm6]	G	A	2.948e^-4	1	INTERGENIC
3R	20300669	3R_20300669_SNP [dm3] 3R_24474947_SNP [dm6]	A	G	2.948e^-4	1	INTERGENIC
3R	27477770	3R_27477770_SNP [dm3] 3R_31652048_SNP [dm6]	A	C	2.966e^-4	1	INTRON kek6
3R	27480479	3R_27480479_SNP [dm3] 3R_31654757_SNP [dm6]	C	G	2.966e^-4	1	INTRON kek6	TF binding site mE1_TFBS_chinmo
3R	27481076	3R_27481076_SNP [dm3] 3R_31655354_SNP [dm6]	A	C	2.966e^-4	1	INTRON kek6
3R	27494285	3R_27494285_SNP [dm3] 3R_31668563_SNP [dm6]	C	T	2.966e^-4	1	UPSTREAM CG1815 INTERGENIC
3R	27498095	3R_27498095_SNP [dm3] 3R_31672373_SNP [dm6]	T	A	2.966e^-4	1	INTRON CG1815
3R	27498421	3R_27498421_SNP [dm3] 3R_31672699_SNP [dm6]	T	C	2.966e^-4	1	INTRON CG1815
3R	27504194	3R_27504194_SNP [dm3] 3R_31678472_SNP [dm6]	T	A	2.966e^-4	1	NON_SYNONYMOUS_CODING CG11550 DOWNSTREAM CG1815	TF binding site mE1_TFBS_sens
3R	27506708	3R_27506708_SNP [dm3] 3R_31680986_SNP [dm6]	C	G	2.966e^-4	1	EXON CR44091
3R	27508150	3R_27508150_SNP [dm3] 3R_31682428_SNP [dm6]	A	G	2.966e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27509034	3R_27509034_SNP [dm3] 3R_31683312_SNP [dm6]	C	T	2.966e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	27511958	3R_27511958_SNP [dm3] 3R_31686236_SNP [dm6]	C	T	2.966e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27514662	3R_27514662_SNP [dm3] 3R_31688940_SNP [dm6]	A	G	2.966e^-4	1	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	6980010	3R_6980010_SNP [dm3] 3R_11154288_SNP [dm6]	T	A	2.968e^-4	1	UPSTREAM Ugt86Dc & 1 other INTERGENIC
2L	14120266	2L_14120266_SNP [dm3] 2L_14120266_SNP [dm6]	G	T	2.977e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13757687	3R_13757687_SNP [dm3] 3R_17931965_SNP [dm6]	A	C	2.989e^-4	1	UTR_5_PRIME cpo INTRON cpo
X	12750391	X_12750391_SNP [dm3] X_12856358_SNP [dm6]	A	G	2.997e^-4	1	SYNONYMOUS_CODING CG4661 INTRON Pde9
2L	14607426	2L_14607426_SNP [dm3] 2L_14607426_SNP [dm6]	G	A	3.000e^-4	1	INTRON osp
3R	16954275	3R_16954275_SNP [dm3] 3R_21128553_SNP [dm6]	G	T	3.013e^-4	1	NON_SYNONYMOUS_CODING CG5793 SPLICE_SITE_REGION CG5793 DOWNSTREAM Obp93a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3418843	X_3418843_SNP [dm3] X_3524810_SNP [dm6]	C	T	3.033e^-4	1	INTRON CG32791
3L	12432305	3L_12432305_SNP [dm3] 3L_12439205_SNP [dm6]	T	C	3.042e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13252845	3R_13252845_SNP [dm3] 3R_17427123_SNP [dm6]	G	T	3.044e^-4	1	INTRON CG5873
2L	3868618	2L_3868618_SNP [dm3] 2L_3868618_SNP [dm6]	A	G	3.049e^-4	1	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
3L	19070335	3L_19070335_INS [dm3] 3L_19077235_INS [dm6]	T	TCAATGGAGTTAAGAGTTAT...	3.050e^-4	1	INTRON Mkp3
2R	11476727	2R_11476727_SNP [dm3] 2R_15589222_SNP [dm6]	G	T	3.051e^-4	1	INTERGENIC
3R	27478301	3R_27478301_SNP [dm3] 3R_31652579_SNP [dm6]	T	C	3.051e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	3.066e^-4	1	UTR_3_PRIME Frq1
3R	23874963	3R_23874963_SNP [dm3] 3R_28049241_SNP [dm6]	A	G	3.070e^-4	1	INTRON CG34362
3R	27501517	3R_27501517_SNP [dm3] 3R_31675795_SNP [dm6]	G	A	3.072e^-4	1	SYNONYMOUS_CODING CG1815 UTR_3_PRIME CG1815	TF binding site mE1_TFBS_sens
2R	3620075	2R_3620075_SNP [dm3] 2R_7732570_SNP [dm6]	T	C	3.074e^-4	1	INTRON CG18812
3L	12665472	3L_12665472_SNP [dm3] 3L_12672372_SNP [dm6]	G	C	3.099e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5545289	3R_5545289_SNP [dm3] 3R_9719567_SNP [dm6]	G	A	3.100e^-4	1	NON_SYNONYMOUS_CODING hyd	TF binding site BDTNP1_TFBS_prd
3R	6113572	3R_6113572_SNP [dm3] 3R_10287850_SNP [dm6]	A	C	3.109e^-4	1	INTRON CG43143
3R	19084560	3R_19084560_SNP [dm3] 3R_23258838_SNP [dm6]	C	T	3.112e^-4	1	UPSTREAM CG13827 & 1 other INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11381261	2R_11381261_INS [dm3] 2R_15493756_INS [dm6]	A	AA	3.114e^-4	1	INTRON CG12964
3L	7634884	3L_7634884_SNP [dm3] 3L_7641784_SNP [dm6]	G	A	3.115e^-4	1	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	13909542	3L_13909542_SNP [dm3] 3L_13916442_SNP [dm6]	G	T	3.119e^-4	1	INTRON Rgl
2L	8736573	2L_8736573_SNP [dm3] 2L_8736573_SNP [dm6]	C	G	3.134e^-4	1	UPSTREAM raw INTRON raw
2R	8921194	2R_8921194_SNP [dm3] 2R_13033689_SNP [dm6]	T	G	3.146e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15803706	2L_15803706_SNP [dm3] 2L_15803706_SNP [dm6]	G	A	3.149e^-4	1	INTERGENIC
X	17903833	X_17903833_SNP [dm3] X_18009800_SNP [dm6]	C	T	3.150e^-4	1	INTRON Sh
X	17903865	X_17903865_DEL [dm3] X_18009832_DEL [dm6]	AGCAATGGAA	A	3.150e^-4	1	INTRON Sh
X	17903879	X_17903879_SNP [dm3] X_18009846_SNP [dm6]	G	A	3.150e^-4	1	INTRON Sh
X	17903899	X_17903899_SNP [dm3] X_18009866_SNP [dm6]	T	G	3.150e^-4	1	INTRON Sh
X	17903925	X_17903925_INS [dm3] X_18009892_INS [dm6]	A	AAA	3.150e^-4	1	INTRON Sh
X	17903961	X_17903961_SNP [dm3] X_18009928_SNP [dm6]	C	T	3.150e^-4	1	INTRON Sh
X	17903996	X_17903996_SNP [dm3] X_18009963_SNP [dm6]	A	T	3.150e^-4	1	INTRON Sh
X	17904003	X_17904003_DEL [dm3] X_18009970_DEL [dm6]	GTCTAAATCTCA...	G	3.150e^-4	1	INTRON Sh
X	17904070	X_17904070_SNP [dm3] X_18010037_SNP [dm6]	T	C	3.150e^-4	1	INTRON Sh
3R	6113635	3R_6113635_SNP [dm3] 3R_10287913_SNP [dm6]	G	T	3.153e^-4	1	INTRON CG43143
2L	13278674	2L_13278674_SNP [dm3] 2L_13278674_SNP [dm6]	A	G	3.169e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13039040	X_13039040_SNP [dm3] X_13145007_SNP [dm6]	T	A	3.172e^-4	1	INTRON CG32645
X	19237076	X_19237076_INS [dm3] X_19343043_INS [dm6]	T	TTATGAACCGAAGATAT...	3.180e^-4	1	INTRON nAChRalpha7
X	19237116	X_19237116_SNP [dm3] X_19343083_SNP [dm6]	C	A	3.180e^-4	1	INTRON nAChRalpha7
2L	13912611	2L_13912611_SNP [dm3] 2L_13912611_SNP [dm6]	G	A	3.185e^-4	1	UTR_3_PRIME Acyp DOWNSTREAM Ance-2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18626768	X_18626768_SNP [dm3] X_18732735_SNP [dm6]	C	T	3.187e^-4	1	UPSTREAM CR45513 INTERGENIC
3R	17660127	3R_17660127_SNP [dm3] 3R_21834405_SNP [dm6]	G	T	3.188e^-4	1	DOWNSTREAM Gr93a INTERGENIC
2L	6710367	2L_6710367_SNP [dm3] 2L_6710367_SNP [dm6]	A	C	3.198e^-4	1	DOWNSTREAM AkhR INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19549285	2R_19549285_SNP [dm3] 2R_23661762_SNP [dm6]	C	T	3.209e^-4	1	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16994592	2R_16994592_SNP [dm3] 2R_21107087_SNP [dm6]	C	T	3.218e^-4	1	INTRON ktub
2R	5536370	2R_5536370_SNP [dm3] 2R_9648865_SNP [dm6]	G	T	3.226e^-4	1	INTRON Mmp2
3R	18331709	3R_18331709_SNP [dm3] 3R_22505987_SNP [dm6]	G	A	3.235e^-4	1	INTRON Octbeta1R
3L	2108076	3L_2108076_INS [dm3] 3L_2108076_INS [dm6]	T	TATTATCT	3.235e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
3L	2108080	3L_2108080_SNP [dm3] 3L_2108080_SNP [dm6]	T	C	3.235e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
2R	8829975	2R_8829975_SNP [dm3] 2R_12942470_SNP [dm6]	T	G	3.250e^-4	1	INTRON Mdr49
2R	16963838	2R_16963838_SNP [dm3] 2R_21076333_SNP [dm6]	G	A	3.250e^-4	1	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27508598	3R_27508598_SNP [dm3] 3R_31682876_SNP [dm6]	A	G	3.256e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13134481	3R_13134481_SNP [dm3] 3R_17308759_SNP [dm6]	T	C	3.258e^-4	1	INTERGENIC
3R	13134900	3R_13134900_SNP [dm3] 3R_17309178_SNP [dm6]	G	A	3.258e^-4	1	INTERGENIC
2L	13875976	2L_13875976_SNP [dm3] 2L_13875976_SNP [dm6]	G	A	3.266e^-4	1	INTRON CenG1A
X	4045672	X_4045672_DEL [dm3] X_4151639_DEL [dm6]	TTTGT	T	3.267e^-4	1	INTRON Fas2
2L	3169571	2L_3169571_SNP [dm3] 2L_3169571_SNP [dm6]	T	C	3.267e^-4	1	UPSTREAM tRNA:S7:23Eb DOWNSTREAM CG44002 & 1 other INTERGENIC
3R	6113516	3R_6113516_SNP [dm3] 3R_10287794_SNP [dm6]	G	A	3.275e^-4	1	INTRON CG43143
2R	16967703	2R_16967703_SNP [dm3] 2R_21080198_SNP [dm6]	A	G	3.275e^-4	1	UPSTREAM Treh INTRON Treh
X	3856673	X_3856673_SNP [dm3] X_3962640_SNP [dm6]	T	G	3.278e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA
2L	19203970	2L_19203970_SNP [dm3] 2L_19203970_SNP [dm6]	C	T	3.282e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	766459	3L_766459_SNP [dm3] 3L_766459_SNP [dm6]	C	T	3.286e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10459913	2L_10459913_SNP [dm3] 2L_10459913_SNP [dm6]	T	C	3.287e^-4	1	SYNONYMOUS_CODING LM408
2L	10459916	2L_10459916_SNP [dm3] 2L_10459916_SNP [dm6]	C	A	3.287e^-4	1	SYNONYMOUS_CODING LM408
2L	15892399	2L_15892399_SNP [dm3] 2L_15892399_SNP [dm6]	A	T	3.288e^-4	1	SYNONYMOUS_CODING Tep1
2L	20799773	2L_20799773_SNP [dm3] 2L_20799773_SNP [dm6]	C	T	3.288e^-4	1	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4336805	2R_4336805_SNP [dm3] 2R_8449300_SNP [dm6]	C	G	3.289e^-4	1	NON_SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Mal-A1
3L	2105623	3L_2105623_SNP [dm3] 3L_2105623_SNP [dm6]	A	G	3.310e^-4	1	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2113971	3L_2113971_SNP [dm3] 3L_2113971_SNP [dm6]	T	A	3.310e^-4	1	INTRON sls
X	6403531	X_6403531_SNP [dm3] X_6509498_SNP [dm6]	A	G	3.321e^-4	1	INTRON CG42340	TF binding site mE1_TFBS_kn
X	17071635	X_17071635_SNP [dm3] X_17177602_SNP [dm6]	G	T	3.321e^-4	1	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	3567433	2R_3567433_SNP [dm3] 2R_7679928_SNP [dm6]	G	C	3.331e^-4	1	SPLICE_SITE_REGION CG1399 SYNONYMOUS_CODING CG1399 UTR_5_PRIME CG1399
2R	6680646	2R_6680646_DEL [dm3] 2R_10793141_DEL [dm6]	ATATATTACATATAT...	A	3.362e^-4	1	DOWNSTREAM mthl13 INTRON CG33144
3L	10712249	3L_10712249_SNP [dm3] 3L_10719149_SNP [dm6]	A	C	3.364e^-4	1	INTERGENIC
3L	5280092	3L_5280092_SNP [dm3] 3L_5286992_SNP [dm6]	G	T	3.367e^-4	1	INTERGENIC
2R	4078247	2R_4078247_SNP [dm3] 2R_8190742_SNP [dm6]	C	T	3.376e^-4	1	INTRON LRP1
2L	9857772	2L_9857772_SNP [dm3] 2L_9857772_SNP [dm6]	A	C	3.377e^-4	1	INTRON nAChRalpha6
2R	16960893	2R_16960893_SNP [dm3] 2R_21073388_SNP [dm6]	G	A	3.391e^-4	1	UPSTREAM CG10527 & 1 other INTERGENIC
X	17922347	X_17922347_SNP [dm3] X_18028314_SNP [dm6]	G	A	3.396e^-4	1	DOWNSTREAM CG6867 INTRON Sh
2R	8836309	2R_8836309_SNP [dm3] 2R_12948804_SNP [dm6]	G	A	3.400e^-4	1	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16865762	3R_16865762_SNP [dm3] 3R_21040040_SNP [dm6]	T	G	3.401e^-4	1	INTRON Dhc93AB
3L	5552140	3L_5552140_SNP [dm3] 3L_5559040_SNP [dm6]	C	T	3.405e^-4	1	DOWNSTREAM sinu INTERGENIC
3L	16906255	3L_16906255_SNP [dm3] 3L_16913155_SNP [dm6]	T	G	3.408e^-4	1	INTRON Lmpt
3L	12200056	3L_12200056_SNP [dm3] 3L_12206956_SNP [dm6]	C	T	3.416e^-4	1	UTR_3_PRIME app UPSTREAM CG5626	TF binding site mE1_TFBS_cad
3R	11281490	3R_11281490_SNP [dm3] 3R_15455768_SNP [dm6]	G	A	3.420e^-4	1	INTRON AdamTS-A
3R	11281500	3R_11281500_SNP [dm3] 3R_15455778_SNP [dm6]	T	G	3.420e^-4	1	INTRON AdamTS-A
3R	25360591	3R_25360591_SNP [dm3] 3R_29534869_SNP [dm6]	A	T	3.424e^-4	1	EXON CR43613	TF binding site mE1_TFBS_chinmo
3L	10893620	3L_10893620_SNP [dm3] 3L_10900520_SNP [dm6]	A	G	3.425e^-4	1	INTERGENIC
2L	19214627	2L_19214627_SNP [dm3] 2L_19214627_SNP [dm6]	C	T	3.432e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15968356	3L_15968356_INS [dm3] 3L_15975256_INS [dm6]	T	TT	3.434e^-4	1	SPLICE_SITE_REGION brm UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3L	486271	3L_486271_SNP [dm3] 3L_486271_SNP [dm6]	G	A	3.436e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_dl
3L	486329	3L_486329_SNP [dm3] 3L_486329_SNP [dm6]	A	C	3.436e^-4	1	INTRON klar
3R	12417124	3R_12417124_INS [dm3] 3R_16591402_INS [dm6]	C	CGGCAGC	3.439e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7431929	2L_7431929_SNP [dm3] 2L_7431929_SNP [dm6]	A	G	3.443e^-4	1	INTRON CG5958
3L	8438335	3L_8438335_SNP [dm3] 3L_8445235_SNP [dm6]	A	G	3.449e^-4	1	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16315480	X_16315480_SNP [dm3] X_16421447_SNP [dm6]	T	A	3.459e^-4	1	INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5590469	2L_5590469_INS [dm3] 2L_5590469_INS [dm6]	G	GAG	3.467e^-4	1	INTERGENIC
2R	12542894	2R_12542894_SNP [dm3] 2R_16655389_SNP [dm6]	G	A	3.470e^-4	1	UTR_3_PRIME Picot UPSTREAM Nach
2R	13928386	2R_13928386_SNP [dm3] 2R_18040881_SNP [dm6]	A	G	3.472e^-4	1	INTERGENIC
2L	19188588	2L_19188588_SNP [dm3] 2L_19188588_SNP [dm6]	C	T	3.491e^-4	1	SPLICE_SITE_REGION pigeon INTRON pigeon	TF binding site mE1_TFBS_cad
3R	27478601	3R_27478601_SNP [dm3] 3R_31652879_SNP [dm6]	A	T	3.492e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13131765	X_13131765_SNP [dm3] X_13237732_SNP [dm6]	A	G	3.497e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2108043	3L_2108043_SNP [dm3] 3L_2108043_SNP [dm6]	T	C	3.509e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
2L	1291492	2L_1291492_SNP [dm3] 2L_1291492_SNP [dm6]	G	A	3.527e^-4	1	INTRON robo3
2R	14883600	2R_14883600_SNP [dm3] 2R_18996095_SNP [dm6]	T	A	3.531e^-4	1	INTRON tn
3R	14901136	3R_14901136_SNP [dm3] 3R_19075414_SNP [dm6]	C	T	3.533e^-4	1	INTRON cdi
3L	680600	3L_680600_SNP [dm3] 3L_680600_SNP [dm6]	A	T	3.538e^-4	1	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	12598834	3R_12598834_SNP [dm3] 3R_16773112_SNP [dm6]	A	G	3.549e^-4	1	EXON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16906049	3L_16906049_SNP [dm3] 3L_16912949_SNP [dm6]	G	A	3.564e^-4	1	INTRON Lmpt
3L	4367598	3L_4367598_SNP [dm3] 3L_4367598_SNP [dm6]	G	A	3.572e^-4	1	UPSTREAM CG11342 DOWNSTREAM DopEcR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18339307	3L_18339307_SNP [dm3] 3L_18346207_SNP [dm6]	A	G	3.575e^-4	1	INTERGENIC
X	5569524	X_5569524_SNP [dm3] X_5675491_SNP [dm6]	G	T	3.597e^-4	1	SPLICE_SITE_REGION Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13757685	3R_13757685_SNP [dm3] 3R_17931963_SNP [dm6]	A	G	3.598e^-4	1	UTR_5_PRIME cpo INTRON cpo
3R	10676829	3R_10676829_SNP [dm3] 3R_14851107_SNP [dm6]	C	T	3.607e^-4	1	INTRON btsz
2L	14080784	2L_14080784_SNP [dm3] 2L_14080784_SNP [dm6]	A	G	3.622e^-4	1	INTRON nAChRalpha5
3R	21245405	3R_21245405_SNP [dm3] 3R_25419683_SNP [dm6]	C	T	3.663e^-4	1	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	3340854	2L_3340854_SNP [dm3] 2L_3340854_SNP [dm6]	T	A	3.676e^-4	1	INTRON E23
2L	6745676	2L_6745676_SNP [dm3] 2L_6745676_SNP [dm6]	C	T	3.680e^-4	1	UPSTREAM CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221
2R	7431697	2R_7431697_SNP [dm3] 2R_11544192_SNP [dm6]	G	A	3.682e^-4	1	INTERGENIC
2L	13252395	2L_13252395_SNP [dm3] 2L_13252395_SNP [dm6]	G	T	3.686e^-4	1	INTRON CG31728
3L	2152189	3L_2152189_SNP [dm3] 3L_2152189_SNP [dm6]	T	C	3.691e^-4	1	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
X	3857153	X_3857153_SNP [dm3] X_3963120_SNP [dm6]	G	A	3.717e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3857154	X_3857154_SNP [dm3] X_3963121_SNP [dm6]	G	A	3.717e^-4	1	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	766427	3L_766427_SNP [dm3] 3L_766427_SNP [dm6]	C	A	3.721e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12273280	2L_12273280_SNP [dm3] 2L_12273280_SNP [dm6]	C	T	3.726e^-4	1	INTRON aret
X	18230074	X_18230074_SNP [dm3] X_18336041_SNP [dm6]	C	G	3.735e^-4	1	INTRON CG6123
2L	8326462	2L_8326462_SNP [dm3] 2L_8326462_SNP [dm6]	T	G	3.735e^-4	1	UPSTREAM CG14275 INTERGENIC
2R	11380943	2R_11380943_SNP [dm3] 2R_15493438_SNP [dm6]	C	T	3.738e^-4	1	INTRON CG12964
3L	12191078	3L_12191078_SNP [dm3] 3L_12197978_SNP [dm6]	C	A	3.747e^-4	1	SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
3L	12643925	3L_12643925_SNP [dm3] 3L_12650825_SNP [dm6]	A	G	3.764e^-4	1	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	2108050	3L_2108050_SNP [dm3] 3L_2108050_SNP [dm6]	A	T	3.773e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
X	417648	X_417648_SNP [dm3] X_523615_SNP [dm6]	G	C	3.787e^-4	1	UPSTREAM elav INTRON arg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_sens mE1_TFBS_Trl
3R	26420166	3R_26420166_SNP [dm3] 3R_30594444_SNP [dm6]	A	G	3.791e^-4	1	INTRON CG2246
2R	6929780	2R_6929780_SNP [dm3] 2R_11042275_SNP [dm6]	G	A	3.796e^-4	1	INTRON luna	TF binding site mE1_TFBS_cad
2R	16927854	2R_16927854_SNP [dm3] 2R_21040349_SNP [dm6]	A	T	3.799e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16881564	3L_16881564_SNP [dm3] 3L_16888464_SNP [dm6]	C	T	3.804e^-4	1	INTRON Lmpt
2L	13276936	2L_13276936_SNP [dm3] 2L_13276936_SNP [dm6]	A	C	3.810e^-4	1	INTRON CG44085
3R	19184374	3R_19184374_SNP [dm3] 3R_23358652_SNP [dm6]	C	T	3.848e^-4	1	UPSTREAM RpS3 DOWNSTREAM Sec13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13600091	X_13600091_SNP [dm3] X_13706058_SNP [dm6]	C	T	3.881e^-4	1	INTRON NnaD & 1 other
2R	5899893	2R_5899893_SNP [dm3] 2R_10012388_SNP [dm6]	G	A	3.889e^-4	1	UPSTREAM mir-4967 INTRON Pka-R2
X	10968318	X_10968318_SNP [dm3] X_11074285_SNP [dm6]	C	T	3.898e^-4	1	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
X	5336661	X_5336661_SNP [dm3] X_5442628_SNP [dm6]	A	G	3.907e^-4	1	INTERGENIC
2R	8921196	2R_8921196_SNP [dm3] 2R_13033691_SNP [dm6]	A	C	3.926e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921197	2R_8921197_SNP [dm3] 2R_13033692_SNP [dm6]	C	T	3.926e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921200	2R_8921200_SNP [dm3] 2R_13033695_SNP [dm6]	C	G	3.926e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13252593	2L_13252593_SNP [dm3] 2L_13252593_SNP [dm6]	T	A	3.927e^-4	1	INTRON CG31728
2R	8922042	2R_8922042_SNP [dm3] 2R_13034537_SNP [dm6]	G	T	3.947e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16381986	2L_16381986_SNP [dm3] 2L_16381986_SNP [dm6]	A	G	3.951e^-4	1	INTERGENIC
2R	7260842	2R_7260842_SNP [dm3] 2R_11373337_SNP [dm6]	A	T	3.960e^-4	1	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10711607	3L_10711607_SNP [dm3] 3L_10718507_SNP [dm6]	G	A	3.964e^-4	1	INTERGENIC
3L	15970727	3L_15970727_SNP [dm3] 3L_15977627_SNP [dm6]	A	T	3.970e^-4	1	UPSTREAM CG17028 INTRON brm & 1 other
X	15281412	X_15281412_DEL [dm3] X_15387379_DEL [dm6]	AG	A	3.981e^-4	1	UTR_3_PRIME Cngl
2L	16729724	2L_16729724_SNP [dm3] 2L_16729724_SNP [dm6]	T	A	3.987e^-4	1	UPSTREAM CG31812 & 1 other DOWNSTREAM CG17996 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx transposable element FlyBase
3R	27515339	3R_27515339_INS [dm3] 3R_31689617_INS [dm6]	G	GGTGCCGCTGCT...	3.990e^-4	1	EXON CR45565	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17707290	2R_17707290_SNP [dm3] 2R_21819785_SNP [dm6]	G	T	4.011e^-4	1	DOWNSTREAM CG13492 INTERGENIC
3R	23871952	3R_23871952_SNP [dm3] 3R_28046230_SNP [dm6]	T	G	4.033e^-4	1	INTRON CG34362
2R	16962014	2R_16962014_SNP [dm3] 2R_21074509_SNP [dm6]	G	A	4.033e^-4	1	INTRON Treh
3R	10681855	3R_10681855_SNP [dm3] 3R_14856133_SNP [dm6]	G	A	4.045e^-4	1	INTRON btsz
3L	13935112	3L_13935112_INS [dm3] 3L_13942012_INS [dm6]	T	TT	4.052e^-4	1	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9961892	2L_9961892_SNP [dm3] 2L_9961892_SNP [dm6]	G	A	4.079e^-4	1	SYNONYMOUS_CODING CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3608075	2R_3608075_SNP [dm3] 2R_7720570_SNP [dm6]	T	A	4.086e^-4	1	INTRON CG18812
2L	7392127	2L_7392127_SNP [dm3] 2L_7392127_SNP [dm6]	C	G	4.088e^-4	1	SYNONYMOUS_CODING CG5160
2L	3524714	2L_3524714_SNP [dm3] 2L_3524714_SNP [dm6]	A	G	4.093e^-4	1	UPSTREAM Sr-CIV & 1 other INTERGENIC
3R	23357892	3R_23357892_SNP [dm3] 3R_27532170_SNP [dm6]	T	C	4.094e^-4	1	NON_SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
2L	18669225	2L_18669225_SNP [dm3] 2L_18669225_SNP [dm6]	C	T	4.103e^-4	1	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
3R	13077547	3R_13077547_SNP [dm3] 3R_17251825_SNP [dm6]	G	A	4.113e^-4	1	INTRON beat-IIb
2L	9444499	2L_9444499_SNP [dm3] 2L_9444499_SNP [dm6]	T	A	4.113e^-4	1	INTRON numb
3L	5146377	3L_5146377_SNP [dm3] 3L_5153277_SNP [dm6]	C	T	4.117e^-4	1	SYNONYMOUS_CODING Srp54k UPSTREAM Gen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	10189104	2R_10189104_SNP [dm3] 2R_14301599_SNP [dm6]	G	A	4.118e^-4	1	NON_SYNONYMOUS_CODING tej	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7384925	3L_7384925_SNP [dm3] 3L_7391825_SNP [dm6]	T	C	4.121e^-4	1	INTRON CG8563
2R	16963858	2R_16963858_SNP [dm3] 2R_21076353_SNP [dm6]	C	A	4.125e^-4	1	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24762092	3R_24762092_SNP [dm3] 3R_28936370_SNP [dm6]	A	C	4.129e^-4	1	INTRON CG14521
3L	2108026	3L_2108026_INS [dm3] 3L_2108026_INS [dm6]	T	TTAATTAGG	4.134e^-4	1	INTRON sls	TF binding site mE1_TFBS_Trl
3L	18696839	3L_18696839_SNP [dm3] 3L_18703739_SNP [dm6]	C	A	4.137e^-4	1	INTERGENIC
3R	16141200	3R_16141200_SNP [dm3] 3R_20315478_SNP [dm6]	A	G	4.153e^-4	1	INTRON CG42668
3R	14813429	3R_14813429_SNP [dm3] 3R_18987707_SNP [dm6]	T	C	4.158e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12808921	2L_12808921_SNP [dm3] 2L_12808921_SNP [dm6]	G	T	4.166e^-4	1	UPSTREAM CR43818 INTERGENIC
X	444279	X_444279_DEL [dm3] X_550246_DEL [dm6]	GTCCCCTTACT...	G	4.175e^-4	1	INTRON Appl
X	18059477	X_18059477_DEL [dm3] X_18165444_DEL [dm6]	TGTTGA	T	4.184e^-4	1	INTRON Frq1
X	4407568	X_4407568_SNP [dm3] X_4513535_SNP [dm6]	A	T	4.188e^-4	1	INTRON CR32773
2R	8829931	2R_8829931_SNP [dm3] 2R_12942426_SNP [dm6]	T	C	4.201e^-4	1	INTRON Mdr49
2L	19342732	2L_19342732_SNP [dm3] 2L_19342732_SNP [dm6]	G	T	4.207e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	8694711	2R_8694711_SNP [dm3] 2R_12807206_SNP [dm6]	G	A	4.240e^-4	1	UTR_3_PRIME CG17580
2R	2828787	2R_2828787_SNP [dm3] 2R_6941282_SNP [dm6]	T	C	4.242e^-4	1	INTRON mim
3L	18953150	3L_18953150_SNP [dm3] 3L_18960050_SNP [dm6]	A	T	4.245e^-4	1	INTERGENIC
2L	19215892	2L_19215892_SNP [dm3] 2L_19215892_SNP [dm6]	A	T	4.256e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12170059	3L_12170059_SNP [dm3] 3L_12176959_SNP [dm6]	C	T	4.265e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170069	3L_12170069_SNP [dm3] 3L_12176969_SNP [dm6]	C	T	4.265e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170083	3L_12170083_SNP [dm3] 3L_12176983_SNP [dm6]	G	A	4.265e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170089	3L_12170089_SNP [dm3] 3L_12176989_SNP [dm6]	T	A	4.265e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170111	3L_12170111_INS [dm3] 3L_12177011_INS [dm6]	C	TGA	4.265e^-4	1	UPSTREAM CAH2 INTERGENIC
2R	11395580	2R_11395580_SNP [dm3] 2R_15508075_SNP [dm6]	C	G	4.265e^-4	1	SYNONYMOUS_CODING Ir52d	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2411269	X_2411269_SNP [dm3] X_2517236_SNP [dm6]	T	C	4.267e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl
3R	19041122	3R_19041122_SNP [dm3] 3R_23215400_SNP [dm6]	G	A	4.323e^-4	1	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6223528	2R_6223528_SNP [dm3] 2R_10336023_SNP [dm6]	T	A	4.326e^-4	1	INTRON CG42732
2L	19200111	2L_19200111_SNP [dm3] 2L_19200111_SNP [dm6]	C	T	4.336e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18076219	3L_18076219_INS [dm3] 3L_18083119_INS [dm6]	A	AA	4.348e^-4	1	INTRON CR43253	TF binding site mE1_TFBS_inv
X	3418894	X_3418894_SNP [dm3] X_3524861_SNP [dm6]	A	T	4.349e^-4	1	INTRON CG32791
3R	3165659	3R_3165659_SNP [dm3] 3R_7339937_SNP [dm6]	A	G	4.352e^-4	1	INTERGENIC
2L	6863921	2L_6863921_SNP [dm3] 2L_6863921_SNP [dm6]	T	G	4.356e^-4	1	INTRON Nha1
3R	20300701	3R_20300701_SNP [dm3] 3R_24474979_SNP [dm6]	C	G	4.373e^-4	1	INTERGENIC
2L	9879184	2L_9879184_SNP [dm3] 2L_9879184_SNP [dm6]	T	C	4.373e^-4	1	INTRON nAChRalpha6
3R	21926793	3R_21926793_SNP [dm3] 3R_26101071_SNP [dm6]	T	C	4.388e^-4	1	INTERGENIC
2R	4945807	2R_4945807_SNP [dm3] 2R_9058302_SNP [dm6]	G	A	4.401e^-4	1	INTRON CG13743
2L	8056981	2L_8056981_SNP [dm3] 2L_8056981_SNP [dm6]	T	C	4.404e^-4	1	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	19208261	2L_19208261_SNP [dm3] 2L_19208261_SNP [dm6]	C	G	4.415e^-4	1	UTR_3_PRIME drl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4145900	2R_4145900_SNP [dm3] 2R_8258395_SNP [dm6]	T	C	4.421e^-4	1	UPSTREAM CG30369 INTERGENIC
3L	10978728	3L_10978728_SNP [dm3] 3L_10985628_SNP [dm6]	A	G	4.426e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad
2R	19984575	2R_19984575_SNP [dm3] 2R_24097052_SNP [dm6]	G	A	4.447e^-4	1	INTRON gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16906047	3L_16906047_SNP [dm3] 3L_16912947_SNP [dm6]	T	C	4.457e^-4	1	INTRON Lmpt
2R	9350241	2R_9350241_SNP [dm3] 2R_13462736_SNP [dm6]	A	G	4.470e^-4	1	INTRON arr
X	377895	X_377895_SNP [dm3] X_483862_SNP [dm6]	C	A	4.472e^-4	1	INTRON CG18273	TF binding site mE1_TFBS_sens
2L	15525425	2L_15525425_SNP [dm3] 2L_15525425_SNP [dm6]	G	T	4.489e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9372401	2R_9372401_SNP [dm3] 2R_13484896_SNP [dm6]	G	A	4.498e^-4	1	SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9372403	2R_9372403_SNP [dm3] 2R_13484898_SNP [dm6]	G	A	4.498e^-4	1	NON_SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16139548	3R_16139548_DEL [dm3] 3R_20313826_DEL [dm6]	TG	T	4.501e^-4	1	INTRON CG42668
3R	21251796	3R_21251796_SNP [dm3] 3R_25426074_SNP [dm6]	T	C	4.510e^-4	1	INTRON Fur1
X	3940247	X_3940247_SNP [dm3] X_4046214_SNP [dm6]	A	C	4.512e^-4	1	INTERGENIC
3L	18953151	3L_18953151_DEL [dm3] 3L_18960051_DEL [dm6]	TTTTCAATAGAAGAGGGCAT...	T	4.524e^-4	1	INTERGENIC
3L	8771855	3L_8771855_SNP [dm3] 3L_8778755_SNP [dm6]	C	A	4.534e^-4	1	INTRON Fhos	TF binding site mE1_TFBS_cad
3L	15876639	3L_15876639_SNP [dm3] 3L_15883539_SNP [dm6]	G	T	4.553e^-4	1	INTRON pHCl
3R	22322665	3R_22322665_SNP [dm3] 3R_26496943_SNP [dm6]	T	A	4.554e^-4	1	INTRON plum
3R	22322678	3R_22322678_SNP [dm3] 3R_26496956_SNP [dm6]	C	T	4.554e^-4	1	INTRON plum
3R	22322893	3R_22322893_INS [dm3] 3R_26497171_INS [dm6]	G	GG	4.554e^-4	1	INTRON plum
3R	22324032	3R_22324032_SNP [dm3] 3R_26498310_SNP [dm6]	A	G	4.554e^-4	1	INTRON plum
3R	22324052	3R_22324052_SNP [dm3] 3R_26498330_SNP [dm6]	C	T	4.554e^-4	1	INTRON plum
3R	22324112	3R_22324112_SNP [dm3] 3R_26498390_SNP [dm6]	C	A	4.554e^-4	1	INTRON plum
3R	26070444	3R_26070444_SNP [dm3] 3R_30244722_SNP [dm6]	C	T	4.554e^-4	1	INTRON CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5545565	3R_5545565_SNP [dm3] 3R_9719843_SNP [dm6]	G	A	4.554e^-4	1	SYNONYMOUS_CODING hyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	5546201	3R_5546201_SNP [dm3] 3R_9720479_SNP [dm6]	G	C	4.554e^-4	1	SYNONYMOUS_CODING hyd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5546297	3R_5546297_SNP [dm3] 3R_9720575_SNP [dm6]	G	A	4.554e^-4	1	SYNONYMOUS_CODING hyd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9665777	3R_9665777_SNP [dm3] 3R_13840055_SNP [dm6]	G	A	4.554e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9665906	3R_9665906_DEL [dm3] 3R_13840184_DEL [dm6]	AA	A	4.554e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9665929	3R_9665929_SNP [dm3] 3R_13840207_SNP [dm6]	T	G	4.554e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13928393	2R_13928393_INS [dm3] 2R_18040888_INS [dm6]	T	TCTT	4.560e^-4	1	INTERGENIC
2R	17997183	2R_17997183_SNP [dm3] 2R_22109678_SNP [dm6]	A	T	4.579e^-4	1	NON_SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
3L	2278086	3L_2278086_SNP [dm3] 3L_2278086_SNP [dm6]	T	G	4.585e^-4	1	DOWNSTREAM yellow-g2 INTERGENIC
3L	4002409	3L_4002409_SNP [dm3] 3L_4002409_SNP [dm6]	C	T	4.588e^-4	1	INTERGENIC
2L	10835166	2L_10835166_SNP [dm3] 2L_10835166_SNP [dm6]	C	G	4.590e^-4	1	INTRON Nos
3L	10434470	3L_10434470_SNP [dm3] 3L_10441370_SNP [dm6]	C	G	4.595e^-4	1	INTERGENIC
2L	1988879	2L_1988879_SNP [dm3] 2L_1988879_SNP [dm6]	A	G	4.601e^-4	1	UTR_3_PRIME Npc2a UPSTREAM CR42874	TF binding site mE1_TFBS_cad
2L	2146653	2L_2146653_SNP [dm3] 2L_2146653_SNP [dm6]	T	C	4.630e^-4	1	SYNONYMOUS_CODING CG11723 UPSTREAM CG7261	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	11677465	2R_11677465_SNP [dm3] 2R_15789960_SNP [dm6]	A	C	4.635e^-4	1	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	11200085	X_11200085_SNP [dm3] X_11306052_SNP [dm6]	T	A	4.643e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14707626	2R_14707626_DEL [dm3] 2R_18820121_DEL [dm6]	TATAAG	A	4.644e^-4	1	INTRON Phb2	TF binding site BDTNP1_TFBS_dl
3L	9562562	3L_9562562_SNP [dm3] 3L_9569462_SNP [dm6]	C	A	4.647e^-4	1	INTRON CG42673
X	4568756	X_4568756_SNP [dm3] X_4674723_SNP [dm6]	T	C	4.651e^-4	1	INTRON rap
2L	14608751	2L_14608751_SNP [dm3] 2L_14608751_SNP [dm6]	G	A	4.652e^-4	1	INTRON osp
X	13698789	X_13698789_SNP [dm3] X_13804756_SNP [dm6]	G	A	4.652e^-4	1	INTRON inaE	TF binding site BDTNP1_TFBS_dl
3R	7349621	3R_7349621_SNP [dm3] 3R_11523899_SNP [dm6]	G	C	4.679e^-4	1	INTERGENIC
3L	10046693	3L_10046693_SNP [dm3] 3L_10053593_SNP [dm6]	C	T	4.686e^-4	1	INTRON dpr6
3R	13252913	3R_13252913_SNP [dm3] 3R_17427191_SNP [dm6]	C	T	4.688e^-4	1	INTRON CG5873
X	10961411	X_10961411_SNP [dm3] X_11067378_SNP [dm6]	A	G	4.720e^-4	1	INTRON CG15203
2R	7950632	2R_7950632_SNP [dm3] 2R_12063127_SNP [dm6]	A	T	4.722e^-4	1	DOWNSTREAM Drep-3 INTERGENIC
3L	8240691	3L_8240691_INS [dm3] 3L_8247591_INS [dm6]	A	AAAGA	4.733e^-4	1	INTRON Dscam4
X	19626131	X_19626131_SNP [dm3] X_19732098_SNP [dm6]	G	A	4.737e^-4	1	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19550957	2R_19550957_SNP [dm3] 2R_23663434_SNP [dm6]	G	A	4.745e^-4	1	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1312225	2R_1312225_SNP [dm3] 2R_5424720_SNP [dm6]	A	G	4.748e^-4	1	INTRON laccase2	transposable element FlyBase
2R	9355290	2R_9355290_SNP [dm3] 2R_13467785_SNP [dm6]	G	C	4.749e^-4	1	INTRON arr
2R	7260824	2R_7260824_DEL [dm3] 2R_11373319_DEL [dm6]	TC	T	4.763e^-4	1	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7271827	3L_7271827_SNP [dm3] 3L_7278727_SNP [dm6]	T	A	4.766e^-4	1	INTRON unc-13-4A
3L	16550084	3L_16550084_SNP [dm3] 3L_16556984_SNP [dm6]	G	T	4.773e^-4	1	INTRON CG4229	TF binding site mE1_TFBS_cad
2L	7844229	2L_7844229_SNP [dm3] 2L_7844229_SNP [dm6]	G	A	4.804e^-4	1	DOWNSTREAM CG14535 INTERGENIC
2R	5301666	2R_5301666_DEL [dm3] 2R_9414161_DEL [dm6]	AA	A	4.805e^-4	1	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8746397	3L_8746397_SNP [dm3] 3L_8753297_SNP [dm6]	G	A	4.806e^-4	1	UPSTREAM Fhos INTERGENIC
3L	17690399	3L_17690399_SNP [dm3] 3L_17697299_SNP [dm6]	T	G	4.809e^-4	1	INTRON Ccn
2L	1282989	2L_1282989_SNP [dm3] 2L_1282989_SNP [dm6]	A	C	4.817e^-4	1	INTRON robo3
X	11811927	X_11811927_SNP [dm3] X_11917894_SNP [dm6]	C	G	4.819e^-4	1	UPSTREAM pot EXON CR32661	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8829963	2R_8829963_SNP [dm3] 2R_12942458_SNP [dm6]	T	A	4.829e^-4	1	INTRON Mdr49
2L	15964405	2L_15964405_SNP [dm3] 2L_15964405_SNP [dm6]	G	C	4.849e^-4	1	INTERGENIC
2R	18750146	2R_18750146_DEL [dm3] 2R_22862623_DEL [dm6]	TACTTGATATAT...	T	4.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18750180	2R_18750180_SNP [dm3] 2R_22862657_SNP [dm6]	T	C	4.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10780083	2L_10780083_SNP [dm3] 2L_10780083_SNP [dm6]	C	T	4.858e^-4	1	INTRON CG31869
3L	654173	3L_654173_SNP [dm3] 3L_654173_SNP [dm6]	C	T	4.858e^-4	1	UPSTREAM Rev1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13278841	2L_13278841_SNP [dm3] 2L_13278841_SNP [dm6]	A	G	4.869e^-4	1	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10968315	X_10968315_SNP [dm3] X_11074282_SNP [dm6]	A	C	4.881e^-4	1	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2R	11476806	2R_11476806_SNP [dm3] 2R_15589301_SNP [dm6]	G	A	4.890e^-4	1	INTERGENIC
X	18831088	X_18831088_SNP [dm3] X_18937055_SNP [dm6]	A	G	4.894e^-4	1	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10967818	X_10967818_SNP [dm3] X_11073785_SNP [dm6]	C	T	4.902e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	13134873	3R_13134873_DEL [dm3] 3R_17309151_DEL [dm6]	ACTAA	A	4.911e^-4	1	INTERGENIC
2L	12272068	2L_12272068_SNP [dm3] 2L_12272068_SNP [dm6]	T	C	4.912e^-4	1	SYNONYMOUS_CODING aret	TF binding site mE1_TFBS_cad
3R	16866282	3R_16866282_SNP [dm3] 3R_21040560_SNP [dm6]	T	C	4.918e^-4	1	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4016311	3L_4016311_SNP [dm3] 3L_4016311_SNP [dm6]	A	G	4.929e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	6233871	2R_6233871_SNP [dm3] 2R_10346366_SNP [dm6]	A	C	4.936e^-4	1	INTRON CG42732
3L	13556990	3L_13556990_SNP [dm3] 3L_13563890_SNP [dm6]	G	A	4.961e^-4	1	INTRON bru-3
3L	12170121	3L_12170121_SNP [dm3] 3L_12177021_SNP [dm6]	C	A	4.970e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	16949712	3L_16949712_SNP [dm3] 3L_16956612_SNP [dm6]	C	A	4.982e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5050310	3L_5050310_SNP [dm3] 3L_5050310_SNP [dm6]	A	G	4.984e^-4	1	DOWNSTREAM CR43884 INTRON Con
2R	9282656	2R_9282656_SNP [dm3] 2R_13395151_SNP [dm6]	C	T	4.998e^-4	1	SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
2R	16966212	2R_16966212_SNP [dm3] 2R_21078707_SNP [dm6]	A	T	5.002e^-4	1	INTRON Treh
2L	3274746	2L_3274746_SNP [dm3] 2L_3274746_SNP [dm6]	A	T	5.011e^-4	1	INTERGENIC
2R	16306809	2R_16306809_SNP [dm3] 2R_20419304_SNP [dm6]	G	A	5.015e^-4	1	INTERGENIC
2R	16306810	2R_16306810_SNP [dm3] 2R_20419305_SNP [dm6]	C	A	5.015e^-4	1	INTERGENIC
X	356755	X_356755_SNP [dm3] X_462722_SNP [dm6]	A	T	5.019e^-4	1	UTR_3_PRIME ase INTRON CG32816	regulatory region REDfly_CRMs
2R	16028698	2R_16028698_SNP [dm3] 2R_20141193_SNP [dm6]	T	G	5.031e^-4	1	INTERGENIC
X	19217850	X_19217850_SNP [dm3] X_19323817_SNP [dm6]	T	C	5.032e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25738163	3R_25738163_SNP [dm3] 3R_29912441_SNP [dm6]	T	G	5.043e^-4	1	DOWNSTREAM Capa INTRON CG31036
3R	27505026	3R_27505026_SNP [dm3] 3R_31679304_SNP [dm6]	A	C	5.045e^-4	1	INTRON CG11550	TF binding site mE1_TFBS_sens
3R	27505027	3R_27505027_SNP [dm3] 3R_31679305_SNP [dm6]	T	A	5.045e^-4	1	INTRON CG11550	TF binding site mE1_TFBS_sens
3R	27505038	3R_27505038_SNP [dm3] 3R_31679316_SNP [dm6]	T	C	5.045e^-4	1	INTRON CG11550	TF binding site mE1_TFBS_sens
2L	14665199	2L_14665199_SNP [dm3] 2L_14665199_SNP [dm6]	C	T	5.046e^-4	1	INTRON osp
3R	23487563	3R_23487563_SNP [dm3] 3R_27661841_SNP [dm6]	A	C	5.050e^-4	1	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19227555	2L_19227555_SNP [dm3] 2L_19227555_SNP [dm6]	G	T	5.056e^-4	1	INTERGENIC
3L	16949691	3L_16949691_DEL [dm3] 3L_16956591_DEL [dm6]	TA	T	5.082e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16949698	3L_16949698_SNP [dm3] 3L_16956598_SNP [dm6]	C	T	5.082e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16637236	2R_16637236_SNP [dm3] 2R_20749731_SNP [dm6]	A	T	5.085e^-4	1	UTR_3_PRIME dpr DOWNSTREAM dpr
2L	12808927	2L_12808927_SNP [dm3] 2L_12808927_SNP [dm6]	A	G	5.091e^-4	1	UPSTREAM CR43818 INTERGENIC
X	5263393	X_5263393_SNP [dm3] X_5369360_SNP [dm6]	G	T	5.106e^-4	1	INTRON SK
3R	18128446	3R_18128446_SNP [dm3] 3R_22302724_SNP [dm6]	T	G	5.117e^-4	1	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9972083	3L_9972083_SNP [dm3] 3L_9978983_SNP [dm6]	C	A	5.125e^-4	1	INTRON dpr6
3L	10617985	3L_10617985_SNP [dm3] 3L_10624885_SNP [dm6]	T	G	5.132e^-4	1	NON_SYNONYMOUS_CODING CG43127 UTR_3_PRIME CG43127
2L	15495034	2L_15495034_SNP [dm3] 2L_15495034_SNP [dm6]	A	G	5.133e^-4	1	INTERGENIC
3R	9665705	3R_9665705_INS [dm3] 3R_13839983_INS [dm6]	A	AACCAA	5.136e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16250228	2R_16250228_SNP [dm3] 2R_20362723_SNP [dm6]	G	A	5.142e^-4	1	INTERGENIC
2L	2733622	2L_2733622_SNP [dm3] 2L_2733622_SNP [dm6]	A	G	5.146e^-4	1	INTRON CG31689
2L	7005792	2L_7005792_SNP [dm3] 2L_7005792_SNP [dm6]	G	A	5.147e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_hb
2R	3610441	2R_3610441_SNP [dm3] 2R_7722936_SNP [dm6]	T	G	5.158e^-4	1	UPSTREAM CG18812 INTRON CG18812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3611459	2R_3611459_SNP [dm3] 2R_7723954_SNP [dm6]	A	C	5.158e^-4	1	INTRON CG18812	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	10302657	3L_10302657_DEL [dm3] 3L_10309557_DEL [dm6]	CAC	C	5.163e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3341783	2L_3341783_SNP [dm3] 2L_3341783_SNP [dm6]	T	C	5.167e^-4	1	INTRON E23
2L	17026007	2L_17026007_SNP [dm3] 2L_17026007_SNP [dm6]	G	A	5.178e^-4	1	INTERGENIC
2L	20800820	2L_20800820_SNP [dm3] 2L_20800820_SNP [dm6]	T	C	5.181e^-4	1	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9283004	2R_9283004_SNP [dm3] 2R_13395499_SNP [dm6]	A	T	5.188e^-4	1	SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
3R	4488977	3R_4488977_SNP [dm3] 3R_8663255_SNP [dm6]	G	A	5.188e^-4	1	SYNONYMOUS_CODING p UPSTREAM CG8032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8736067	2L_8736067_SNP [dm3] 2L_8736067_SNP [dm6]	A	C	5.198e^-4	1	UPSTREAM raw INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	5.201e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5406932	2R_5406932_SNP [dm3] 2R_9519427_SNP [dm6]	T	A	5.203e^-4	1	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17362718	2R_17362718_SNP [dm3] 2R_21475213_SNP [dm6]	T	C	5.208e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	17363167	2R_17363167_SNP [dm3] 2R_21475662_SNP [dm6]	C	G	5.208e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15174026	2L_15174026_SNP [dm3] 2L_15174026_SNP [dm6]	T	C	5.211e^-4	1	INTRON CG4168
3R	14523233	3R_14523233_SNP [dm3] 3R_18697511_SNP [dm6]	A	C	5.229e^-4	1	INTERGENIC
3R	27504149	3R_27504149_INS [dm3] 3R_31678427_INS [dm6]	C	CCTCTGACC	5.237e^-4	1	SPLICE_SITE_REGION CG11550 DOWNSTREAM CG1815 INTRON CG11550	TF binding site mE1_TFBS_sens
3L	3848242	3L_3848242_SNP [dm3] 3L_3848242_SNP [dm6]	G	A	5.239e^-4	1	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco
3L	2518986	3L_2518986_SNP [dm3] 3L_2518986_SNP [dm6]	C	T	5.247e^-4	1	DOWNSTREAM CR45170 INTRON Spn
3R	12929324	3R_12929324_SNP [dm3] 3R_17103602_SNP [dm6]	G	A	5.248e^-4	1	INTRON cher
2R	5981661	2R_5981661_SNP [dm3] 2R_10094156_SNP [dm6]	G	T	5.252e^-4	1	INTRON CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16772150	2R_16772150_SNP [dm3] 2R_20884645_SNP [dm6]	A	G	5.254e^-4	1	SYNONYMOUS_CODING otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7270467	2R_7270467_SNP [dm3] 2R_11382962_SNP [dm6]	A	T	5.254e^-4	1	UTR_5_PRIME Sod3 INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	19975579	2R_19975579_SNP [dm3] 2R_24088056_SNP [dm6]	T	G	5.255e^-4	1	INTRON snama
2R	19855649	2R_19855649_SNP [dm3] 2R_23968126_SNP [dm6]	A	T	5.256e^-4	1	UPSTREAM CG34213 DOWNSTREAM CG10904 INTRON or	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19855668	2R_19855668_SNP [dm3] 2R_23968145_SNP [dm6]	A	T	5.256e^-4	1	SPLICE_SITE_REGION or UPSTREAM CG34213 DOWNSTREAM CG10904 INTRON or	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17676078	2R_17676078_SNP [dm3] 2R_21788573_SNP [dm6]	G	T	5.278e^-4	1	INTERGENIC
3R	21926738	3R_21926738_SNP [dm3] 3R_26101016_SNP [dm6]	T	A	5.314e^-4	1	INTERGENIC
3R	19041115	3R_19041115_SNP [dm3] 3R_23215393_SNP [dm6]	G	T	5.319e^-4	1	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15405217	3R_15405217_SNP [dm3] 3R_19579495_SNP [dm6]	T	C	5.321e^-4	1	INTRON Dys
2L	14590487	2L_14590487_SNP [dm3] 2L_14590487_SNP [dm6]	T	C	5.329e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14604808	2L_14604808_SNP [dm3] 2L_14604808_SNP [dm6]	A	G	5.329e^-4	1	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15131941	2R_15131941_SNP [dm3] 2R_19244436_SNP [dm6]	T	C	5.348e^-4	1	DOWNSTREAM cora INTERGENIC
3L	5796761	3L_5796761_SNP [dm3] 3L_5803661_SNP [dm6]	C	A	5.380e^-4	1	UPSTREAM CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16381940	2L_16381940_SNP [dm3] 2L_16381940_SNP [dm6]	T	A	5.389e^-4	1	INTERGENIC
3R	9234401	3R_9234401_SNP [dm3] 3R_13408679_SNP [dm6]	C	A	5.389e^-4	1	DOWNSTREAM yellow-e INTERGENIC
3R	21230222	3R_21230222_SNP [dm3] 3R_25404500_SNP [dm6]	T	G	5.391e^-4	1	INTRON Fur1
2R	15753064	2R_15753064_SNP [dm3] 2R_19865559_SNP [dm6]	T	A	5.392e^-4	1	INTRON Obp56i
2L	12388307	2L_12388307_DEL [dm3] 2L_12388307_DEL [dm6]	TT	T	5.404e^-4	1	INTRON bru-2
3R	612845	3R_612845_SNP [dm3] 3R_4787123_SNP [dm6]	T	C	5.404e^-4	1	UTR_3_PRIME ctrip
2R	7250705	2R_7250705_SNP [dm3] 2R_11363200_SNP [dm6]	T	C	5.411e^-4	1	SYNONYMOUS_CODING Gr47b
2L	3341507	2L_3341507_SNP [dm3] 2L_3341507_SNP [dm6]	G	T	5.421e^-4	1	INTRON E23
X	3418848	X_3418848_SNP [dm3] X_3524815_SNP [dm6]	T	C	5.458e^-4	1	INTRON CG32791
2L	5866402	2L_5866402_SNP [dm3] 2L_5866402_SNP [dm6]	A	C	5.464e^-4	1	INTRON rau
3R	9665926	3R_9665926_SNP [dm3] 3R_13840204_SNP [dm6]	A	C	5.467e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17100497	2R_17100497_INS [dm3] 2R_21212992_INS [dm6]	C	CTTC	5.480e^-4	1	CODON_INSERTION CG4302 DOWNSTREAM CG44245
2R	16703269	2R_16703269_SNP [dm3] 2R_20815764_SNP [dm6]	G	A	5.481e^-4	1	INTERGENIC
2R	7259261	2R_7259261_SNP [dm3] 2R_11371756_SNP [dm6]	A	C	5.482e^-4	1	UPSTREAM Tapdelta INTERGENIC
X	2322871	X_2322871_SNP [dm3] X_2428838_SNP [dm6]	C	T	5.489e^-4	1	SYNONYMOUS_CODING gt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	20135956	3L_20135956_SNP [dm3] 3L_20142856_SNP [dm6]	C	T	5.506e^-4	1	INTERGENIC
2L	8097792	2L_8097792_SNP [dm3] 2L_8097792_SNP [dm6]	C	G	5.523e^-4	1	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11748669	2R_11748669_INS [dm3] 2R_15861164_INS [dm6]	T	TAAAATAAACACTAATCACT...	5.540e^-4	1	UTR_5_PRIME Gpo-1 INTRON Gpo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18364161	2R_18364161_SNP [dm3] 2R_22476656_SNP [dm6]	A	C	5.554e^-4	1	SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
X	17561374	X_17561374_SNP [dm3] X_17667341_SNP [dm6]	C	A	5.555e^-4	1	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10985453	3L_10985453_SNP [dm3] 3L_10992353_SNP [dm6]	A	T	5.579e^-4	1	INTRON klu
3L	17690389	3L_17690389_SNP [dm3] 3L_17697289_SNP [dm6]	T	G	5.580e^-4	1	INTRON Ccn
X	3702980	X_3702980_SNP [dm3] X_3808947_SNP [dm6]	T	A	5.590e^-4	1	INTRON fd3F
3R	5546936	3R_5546936_SNP [dm3] 3R_9721214_SNP [dm6]	T	C	5.592e^-4	1	SYNONYMOUS_CODING hyd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5547197	3R_5547197_SNP [dm3] 3R_9721475_SNP [dm6]	C	T	5.592e^-4	1	SYNONYMOUS_CODING hyd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3594148	3L_3594148_SNP [dm3] 3L_3594148_SNP [dm6]	T	G	5.596e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6966100	3R_6966100_SNP [dm3] 3R_11140378_SNP [dm6]	A	G	5.597e^-4	1	DOWNSTREAM CG4706 INTERGENIC
2R	3298413	2R_3298413_SNP [dm3] 2R_7410908_SNP [dm6]	G	A	5.608e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11170047	2R_11170047_SNP [dm3] 2R_15282542_SNP [dm6]	T	C	5.620e^-4	1	INTRON Trpm
2R	11163875	2R_11163875_SNP [dm3] 2R_15276370_SNP [dm6]	A	T	5.627e^-4	1	INTRON Trpm
X	3522540	X_3522540_INS [dm3] X_3628507_INS [dm6]	A	AA	5.627e^-4	1	INTRON AstA-R1
X	5770282	X_5770282_SNP [dm3] X_5876249_SNP [dm6]	C	A	5.627e^-4	1	SYNONYMOUS_CODING mof DOWNSTREAM CG3016	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8908623	X_8908623_SNP [dm3] X_9014590_SNP [dm6]	G	A	5.627e^-4	1	INTRON rdgA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5302929	X_5302929_SNP [dm3] X_5408896_SNP [dm6]	T	C	5.642e^-4	1	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	15635109	2L_15635109_INS [dm3] 2L_15635109_INS [dm6]	A	AACAAATTGATTT...	5.643e^-4	1	DOWNSTREAM CG18480 INTERGENIC
3R	5540591	3R_5540591_DEL [dm3] 3R_9714869_DEL [dm6]	CGA	C	5.660e^-4	1	UTR_3_PRIME hyd DOWNSTREAM dmt
X	17015033	X_17015033_SNP [dm3] X_17121000_SNP [dm6]	T	G	5.685e^-4	1	INTRON CG5004
3L	21859930	3L_21859930_SNP [dm3] 3L_21866830_SNP [dm6]	T	G	5.690e^-4	1	INTRON mub	TF binding site BDTNP1_TFBS_twi
2L	14592354	2L_14592354_DEL [dm3] 2L_14592354_DEL [dm6]	GG	G	5.693e^-4	1	INTERGENIC
X	18230261	X_18230261_SNP [dm3] X_18336228_SNP [dm6]	A	G	5.697e^-4	1	INTRON CG6123
3R	16139581	3R_16139581_DEL [dm3] 3R_20313859_DEL [dm6]	AA	A	5.709e^-4	1	INTRON CG42668
2L	19188663	2L_19188663_SNP [dm3] 2L_19188663_SNP [dm6]	G	A	5.733e^-4	1	SYNONYMOUS_CODING pigeon
X	3210682	X_3210682_SNP [dm3] X_3316649_SNP [dm6]	T	A	5.746e^-4	1	UPSTREAM CG10793 INTRON dnc & 1 other
3L	3720162	3L_3720162_INS [dm3] 3L_3720162_INS [dm6]	T	TCC	5.752e^-4	1	INTRON CG32264
X	17290461	X_17290461_SNP [dm3] X_17396428_SNP [dm6]	T	C	5.759e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13867061	3R_13867061_SNP [dm3] 3R_18041339_SNP [dm6]	C	T	5.761e^-4	1	INTERGENIC
2L	1446021	2L_1446021_SNP [dm3] 2L_1446021_SNP [dm6]	C	A	5.763e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2659752	3L_2659752_SNP [dm3] 3L_2659752_SNP [dm6]	A	T	5.769e^-4	1	INTRON Fife & 1 other
3L	3594164	3L_3594164_SNP [dm3] 3L_3594164_SNP [dm6]	T	C	5.779e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12273422	2L_12273422_SNP [dm3] 2L_12273422_SNP [dm6]	A	G	5.781e^-4	1	INTRON aret
2R	9233718	2R_9233718_SNP [dm3] 2R_13346213_SNP [dm6]	G	A	5.782e^-4	1	INTRON CR44206
X	10295890	X_10295890_SNP [dm3] X_10401857_SNP [dm6]	A	C	5.784e^-4	1	INTRON flw
2L	3274799	2L_3274799_SNP [dm3] 2L_3274799_SNP [dm6]	C	A	5.784e^-4	1	INTERGENIC
3L	18299495	3L_18299495_SNP [dm3] 3L_18306395_SNP [dm6]	C	T	5.792e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5866396	2L_5866396_SNP [dm3] 2L_5866396_SNP [dm6]	T	C	5.811e^-4	1	INTRON rau
2R	17166794	2R_17166794_SNP [dm3] 2R_21279289_SNP [dm6]	A	G	5.822e^-4	1	INTRON Rgk3
2R	19880247	2R_19880247_SNP [dm3] 2R_23992724_SNP [dm6]	A	G	5.828e^-4	1	SYNONYMOUS_CODING CG3860 DOWNSTREAM Pask & 1 other
2L	10071595	2L_10071595_SNP [dm3] 2L_10071595_SNP [dm6]	G	A	5.840e^-4	1	INTRON CG44153
2R	6226796	2R_6226796_SNP [dm3] 2R_10339291_SNP [dm6]	G	A	5.856e^-4	1	INTRON CG42732
3R	17660107	3R_17660107_SNP [dm3] 3R_21834385_SNP [dm6]	C	A	5.868e^-4	1	DOWNSTREAM Gr93a INTERGENIC
3L	10371968	3L_10371968_SNP [dm3] 3L_10378868_SNP [dm6]	A	G	5.874e^-4	1	INTERGENIC
3R	16744011	3R_16744011_SNP [dm3] 3R_20918289_SNP [dm6]	T	G	5.876e^-4	1	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	9795872	3R_9795872_SNP [dm3] 3R_13970150_SNP [dm6]	T	G	5.879e^-4	1	SYNONYMOUS_CODING rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	11908193	3L_11908193_SNP [dm3] 3L_11915093_SNP [dm6]	T	A	5.893e^-4	1	INTRON CG44837
3L	11908215	3L_11908215_SNP [dm3] 3L_11915115_SNP [dm6]	G	C	5.893e^-4	1	INTRON CG44837
3L	11908248	3L_11908248_SNP [dm3] 3L_11915148_SNP [dm6]	G	A	5.893e^-4	1	INTRON CG44837
2R	14707654	2R_14707654_DEL [dm3] 2R_18820149_DEL [dm6]	TACTATGTAT	T	5.896e^-4	1	INTRON Phb2	TF binding site BDTNP1_TFBS_dl
3R	13255261	3R_13255261_SNP [dm3] 3R_17429539_SNP [dm6]	C	T	5.897e^-4	1	INTRON CG5873
3R	13255366	3R_13255366_SNP [dm3] 3R_17429644_SNP [dm6]	C	G	5.897e^-4	1	INTRON CG5873
3R	13255394	3R_13255394_SNP [dm3] 3R_17429672_SNP [dm6]	A	T	5.897e^-4	1	INTRON CG5873
2L	1172267	2L_1172267_SNP [dm3] 2L_1172267_SNP [dm6]	A	T	5.913e^-4	1	NON_SYNONYMOUS_CODING CG5118 UPSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12232196	3R_12232196_SNP [dm3] 3R_16406474_SNP [dm6]	T	A	5.930e^-4	1	UPSTREAM CR45630 INTERGENIC
3R	12232232	3R_12232232_SNP [dm3] 3R_16406510_SNP [dm6]	C	T	5.930e^-4	1	UPSTREAM CR45630 INTERGENIC
X	21308277	X_21308277_SNP [dm3] X_21437250_SNP [dm6]	C	T	5.932e^-4	1	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	14994138	2R_14994138_SNP [dm3] 2R_19106633_SNP [dm6]	G	C	5.943e^-4	1	INTRON 5-HT1A
2R	8921153	2R_8921153_SNP [dm3] 2R_13033648_SNP [dm6]	T	A	5.944e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23873666	3R_23873666_SNP [dm3] 3R_28047944_SNP [dm6]	C	A	5.947e^-4	1	INTRON CG34362
2L	19795601	2L_19795601_SNP [dm3] 2L_19795601_SNP [dm6]	A	G	5.951e^-4	1	NON_SYNONYMOUS_CODING fs_2_ltoPP43 UPSTREAM sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	11939564	2L_11939564_SNP [dm3] 2L_11939564_SNP [dm6]	G	A	5.964e^-4	1	DOWNSTREAM Or33c INTERGENIC
X	16135320	X_16135320_SNP [dm3] X_16241287_SNP [dm6]	T	A	5.970e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	6262816	2R_6262816_SNP [dm3] 2R_10375311_SNP [dm6]	C	T	5.985e^-4	1	DOWNSTREAM Ir47b INTRON CG42732
2L	18968433	2L_18968433_SNP [dm3] 2L_18968433_SNP [dm6]	T	C	5.998e^-4	1	START_GAINED Nak UTR_5_PRIME Nak UPSTREAM Tango6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15278704	2L_15278704_SNP [dm3] 2L_15278704_SNP [dm6]	T	C	6.016e^-4	1	INTRON CR43682
3L	22501526	3L_22501526_SNP [dm3] 3L_22508426_SNP [dm6]	G	C	6.025e^-4	1	INTERGENIC
3L	855707	3L_855707_SNP [dm3] 3L_855707_SNP [dm6]	G	A	6.041e^-4	1	INTRON dpr20
3R	26421068	3R_26421068_SNP [dm3] 3R_30595346_SNP [dm6]	C	G	6.049e^-4	1	INTRON CG2246
3R	26421089	3R_26421089_SNP [dm3] 3R_30595367_SNP [dm6]	A	G	6.049e^-4	1	INTRON CG2246
X	17561644	X_17561644_SNP [dm3] X_17667611_SNP [dm6]	A	G	6.056e^-4	1	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5718979	3L_5718979_SNP [dm3] 3L_5725879_SNP [dm6]	T	G	6.065e^-4	1	INTRON sif
2L	8736072	2L_8736072_SNP [dm3] 2L_8736072_SNP [dm6]	A	C	6.070e^-4	1	UPSTREAM raw INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10456211	2R_10456211_SNP [dm3] 2R_14568706_SNP [dm6]	T	G	6.082e^-4	1	INTRON ttv
2R	10456222	2R_10456222_INS [dm3] 2R_14568717_INS [dm6]	T	TGAGAAATT	6.082e^-4	1	INTRON ttv
2R	8345450	2R_8345450_SNP [dm3] 2R_12457945_SNP [dm6]	T	C	6.084e^-4	1	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12599452	2L_12599452_SNP [dm3] 2L_12599452_SNP [dm6]	C	A	6.085e^-4	1	INTRON nub
3L	16949799	3L_16949799_SNP [dm3] 3L_16956699_SNP [dm6]	C	A	6.091e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20334776	2L_20334776_SNP [dm3] 2L_20334776_SNP [dm6]	T	G	6.095e^-4	1	INTRON spir
3R	26421050	3R_26421050_SNP [dm3] 3R_30595328_SNP [dm6]	C	T	6.102e^-4	1	SPLICE_SITE_REGION CG2246 SYNONYMOUS_CODING CG2246
2L	1466608	2L_1466608_INS [dm3] 2L_1466608_INS [dm6]	A	CT	6.104e^-4	1	INTERGENIC
3L	2727890	3L_2727890_SNP [dm3] 3L_2727890_SNP [dm6]	G	A	6.112e^-4	1	INTRON Mrtf
2L	13920212	2L_13920212_SNP [dm3] 2L_13920212_SNP [dm6]	T	C	6.115e^-4	1	DOWNSTREAM CG16886 INTRON Ance-3
2R	13536713	2R_13536713_SNP [dm3] 2R_17649208_SNP [dm6]	G	T	6.117e^-4	1	SPLICE_SITE_REGION CCHa1-R INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18178904	X_18178904_INS [dm3] X_18284871_INS [dm6]	T	TTT	6.120e^-4	1	DOWNSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19157093	3R_19157093_SNP [dm3] 3R_23331371_SNP [dm6]	G	A	6.132e^-4	1	INTRON pnt
3R	19157101	3R_19157101_SNP [dm3] 3R_23331379_SNP [dm6]	T	C	6.132e^-4	1	INTRON pnt
2L	4177634	2L_4177634_SNP [dm3] 2L_4177634_SNP [dm6]	T	C	6.134e^-4	1	INTERGENIC
3L	12170115	3L_12170115_SNP [dm3] 3L_12177015_SNP [dm6]	C	T	6.141e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170123	3L_12170123_DEL [dm3] 3L_12177023_DEL [dm6]	TCTCT	T	6.141e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170130	3L_12170130_SNP [dm3] 3L_12177030_SNP [dm6]	A	T	6.141e^-4	1	UPSTREAM CAH2 INTERGENIC
3L	12170152	3L_12170152_SNP [dm3] 3L_12177052_SNP [dm6]	A	C	6.141e^-4	1	UPSTREAM CAH2 INTERGENIC
2R	7812946	2R_7812946_SNP [dm3] 2R_11925441_SNP [dm6]	A	C	6.166e^-4	1	INTERGENIC	TF binding site mE1_TFBS_run
3R	26540629	3R_26540629_SNP [dm3] 3R_30714907_SNP [dm6]	G	A	6.168e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27570199	3R_27570199_SNP [dm3] 3R_31744477_SNP [dm6]	G	C	6.178e^-4	1	SYNONYMOUS_CODING CG1896 DOWNSTREAM awd & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18467400	3R_18467400_SNP [dm3] 3R_22641678_SNP [dm6]	T	G	6.180e^-4	1	INTRON CG45058
3L	17690365	3L_17690365_SNP [dm3] 3L_17697265_SNP [dm6]	C	T	6.183e^-4	1	INTRON Ccn
3R	27478869	3R_27478869_SNP [dm3] 3R_31653147_SNP [dm6]	G	A	6.197e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
3R	15895954	3R_15895954_SNP [dm3] 3R_20070232_SNP [dm6]	T	C	6.200e^-4	1	INTERGENIC
2R	14405614	2R_14405614_SNP [dm3] 2R_18518109_SNP [dm6]	T	C	6.202e^-4	1	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2507238	2L_2507238_SNP [dm3] 2L_2507238_SNP [dm6]	C	T	6.218e^-4	1	DOWNSTREAM CR44607 INTERGENIC
2L	2507285	2L_2507285_SNP [dm3] 2L_2507285_SNP [dm6]	T	C	6.218e^-4	1	DOWNSTREAM CR44607 INTERGENIC
X	2322706	X_2322706_SNP [dm3] X_2428673_SNP [dm6]	T	C	6.219e^-4	1	SYNONYMOUS_CODING gt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	21315322	X_21315322_SNP [dm3] X_21444295_SNP [dm6]	T	C	6.223e^-4	1	INTRON CG42343
X	21315487	X_21315487_SNP [dm3] X_21444460_SNP [dm6]	C	A	6.223e^-4	1	INTRON CG42343
2R	13928391	2R_13928391_SNP [dm3] 2R_18040886_SNP [dm6]	C	G	6.232e^-4	1	INTERGENIC
3R	3172707	3R_3172707_SNP [dm3] 3R_7346985_SNP [dm6]	A	G	6.239e^-4	1	SYNONYMOUS_CODING nxf4 DOWNSTREAM CG31496	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	418177	X_418177_DEL [dm3] X_524144_DEL [dm6]	ACCGAG	A	6.241e^-4	1	UPSTREAM elav INTRON arg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	2681648	3L_2681648_SNP [dm3] 3L_2681648_SNP [dm6]	T	C	6.244e^-4	1	INTRON Fife
2L	1237417	2L_1237417_SNP [dm3] 2L_1237417_SNP [dm6]	A	T	6.268e^-4	1	INTERGENIC
3L	8746396	3L_8746396_SNP [dm3] 3L_8753296_SNP [dm6]	G	A	6.273e^-4	1	UPSTREAM Fhos INTERGENIC
2L	13277864	2L_13277864_SNP [dm3] 2L_13277864_SNP [dm6]	G	A	6.285e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19207932	2L_19207932_SNP [dm3] 2L_19207932_SNP [dm6]	A	G	6.308e^-4	1	UTR_3_PRIME drl
2R	16028648	2R_16028648_SNP [dm3] 2R_20141143_SNP [dm6]	C	T	6.314e^-4	1	INTERGENIC
X	12103447	X_12103447_SNP [dm3] X_12209414_SNP [dm6]	A	G	6.332e^-4	1	INTRON Ten-a
X	12103465	X_12103465_SNP [dm3] X_12209432_SNP [dm6]	C	A	6.332e^-4	1	INTRON Ten-a
X	12103481	X_12103481_SNP [dm3] X_12209448_SNP [dm6]	G	T	6.332e^-4	1	INTRON Ten-a
2L	19181068	2L_19181068_SNP [dm3] 2L_19181068_SNP [dm6]	G	T	6.341e^-4	1	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19181069	2L_19181069_SNP [dm3] 2L_19181069_SNP [dm6]	T	C	6.341e^-4	1	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3608183	2R_3608183_SNP [dm3] 2R_7720678_SNP [dm6]	C	A	6.342e^-4	1	INTRON CG18812
2L	19434242	2L_19434242_SNP [dm3] 2L_19434242_SNP [dm6]	T	C	6.351e^-4	1	INTRON Rab9
3L	8030199	3L_8030199_SNP [dm3] 3L_8037099_SNP [dm6]	T	C	6.351e^-4	1	INTRON nmo	TF binding site mE1_TFBS_inv
3R	17353282	3R_17353282_SNP [dm3] 3R_21527560_SNP [dm6]	G	A	6.357e^-4	1	SYNONYMOUS_CODING CG7956 UTR_3_PRIME CG7956
2R	20021302	2R_20021302_SNP [dm3] 2R_24133779_SNP [dm6]	A	C	6.365e^-4	1	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17901812	X_17901812_SNP [dm3] X_18007779_SNP [dm6]	T	C	6.380e^-4	1	UPSTREAM CG12672 INTRON Sh
2R	20729249	2R_20729249_SNP [dm3] 2R_24841726_SNP [dm6]	G	T	6.393e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20738086	2R_20738086_SNP [dm3] 2R_24850563_SNP [dm6]	G	T	6.393e^-4	1	DOWNSTREAM CG3650 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	27523278	3R_27523278_SNP [dm3] 3R_31697556_SNP [dm6]	G	T	6.395e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	17126021	2R_17126021_SNP [dm3] 2R_21238516_SNP [dm6]	C	G	6.402e^-4	1	INTRON ASPP
3R	11253675	3R_11253675_SNP [dm3] 3R_15427953_SNP [dm6]	C	G	6.418e^-4	1	INTRON CG6118
3L	10893725	3L_10893725_DEL [dm3] 3L_10900625_DEL [dm6]	GCAATGG	G	6.425e^-4	1	INTERGENIC
3L	3594156	3L_3594156_SNP [dm3] 3L_3594156_SNP [dm6]	G	A	6.425e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3594160	3L_3594160_SNP [dm3] 3L_3594160_SNP [dm6]	C	A	6.425e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5892853	2L_5892853_SNP [dm3] 2L_5892853_SNP [dm6]	T	A	6.434e^-4	1	UTR_5_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site mE1_TFBS_sens
3L	15109580	3L_15109580_SNP [dm3] 3L_15116480_SNP [dm6]	T	A	6.435e^-4	1	UPSTREAM Cep135 DOWNSTREAM CG13458 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23560158	3R_23560158_SNP [dm3] 3R_27734436_SNP [dm6]	G	C	6.444e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17461939	2L_17461939_SNP [dm3] 2L_17461939_SNP [dm6]	C	G	6.468e^-4	1	INTRON BicD
2R	5302751	2R_5302751_SNP [dm3] 2R_9415246_SNP [dm6]	T	C	6.477e^-4	1	SYNONYMOUS_CODING wun2 UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5240499	X_5240499_SNP [dm3] X_5346466_SNP [dm6]	A	G	6.489e^-4	1	INTRON SK
X	5810021	X_5810021_DEL [dm3] X_5915988_DEL [dm6]	TACT	T	6.497e^-4	1	UPSTREAM CG3011 INTRON CG3011
2R	583712	2R_583712_SNP [dm3] 2R_4696207_SNP [dm6]	A	T	6.511e^-4	1	INTRON Nipped-B	transposable element FlyBase
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	6.518e^-4	1	UTR_3_PRIME Frq1
2R	10954426	2R_10954426_SNP [dm3] 2R_15066921_SNP [dm6]	T	A	6.527e^-4	1	INTERGENIC
2R	10954429	2R_10954429_SNP [dm3] 2R_15066924_SNP [dm6]	G	A	6.527e^-4	1	INTERGENIC
2R	10954432	2R_10954432_SNP [dm3] 2R_15066927_SNP [dm6]	G	C	6.527e^-4	1	INTERGENIC
2L	14718212	2L_14718212_SNP [dm3] 2L_14718212_SNP [dm6]	G	A	6.534e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14883606	2R_14883606_SNP [dm3] 2R_18996101_SNP [dm6]	A	T	6.538e^-4	1	INTRON tn
2R	7951890	2R_7951890_SNP [dm3] 2R_12064385_SNP [dm6]	A	G	6.546e^-4	1	DOWNSTREAM CG8888 INTERGENIC
2R	6834158	2R_6834158_SNP [dm3] 2R_10946653_SNP [dm6]	A	G	6.550e^-4	1	EXON CR45228	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2108155	3L_2108155_SNP [dm3] 3L_2108155_SNP [dm6]	T	A	6.555e^-4	1	INTRON sls
2R	17711810	2R_17711810_SNP [dm3] 2R_21824305_SNP [dm6]	T	C	6.558e^-4	1	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10748408	3L_10748408_SNP [dm3] 3L_10755308_SNP [dm6]	A	G	6.561e^-4	1	INTERGENIC
2L	19383094	2L_19383094_DEL [dm3] 2L_19383094_DEL [dm6]	AGTTTA	A	6.563e^-4	1	DOWNSTREAM fon & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	15733039	3R_15733039_DEL [dm3] 3R_19907317_DEL [dm6]	GATTTCATTCGCTTATCTTC...	G	6.573e^-4	1	UPSTREAM CR45047 INTRON RhoGAP92B
3R	15733169	3R_15733169_SNP [dm3] 3R_19907447_SNP [dm6]	G	A	6.573e^-4	1	UPSTREAM CR45047 DOWNSTREAM CR45048 INTRON RhoGAP92B
3R	27567012	3R_27567012_SNP [dm3] 3R_31741290_SNP [dm6]	A	T	6.576e^-4	1	INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
3R	23384591	3R_23384591_SNP [dm3] 3R_27558869_SNP [dm6]	G	A	6.577e^-4	1	UTR_5_PRIME Klp98A DOWNSTREAM CG5646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	14719364	2L_14719364_SNP [dm3] 2L_14719364_SNP [dm6]	C	A	6.596e^-4	1	INTERGENIC
3R	770047	3R_770047_SNP [dm3] 3R_4944325_SNP [dm6]	C	G	6.609e^-4	1	INTRON Cdep	transposable element FlyBase
2R	10188541	2R_10188541_SNP [dm3] 2R_14301036_SNP [dm6]	G	A	6.610e^-4	1	SYNONYMOUS_CODING tej DOWNSTREAM Ih
2R	17174124	2R_17174124_SNP [dm3] 2R_21286619_SNP [dm6]	T	C	6.618e^-4	1	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3L	12191061	3L_12191061_SNP [dm3] 3L_12197961_SNP [dm6]	A	T	6.623e^-4	1	NON_SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
3L	8405744	3L_8405744_SNP [dm3] 3L_8412644_SNP [dm6]	T	C	6.633e^-4	1	SYNONYMOUS_CODING Exo70 UTR_5_PRIME Oseg1 UPSTREAM mtrm	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	11036771	2R_11036771_SNP [dm3] 2R_15149266_SNP [dm6]	G	T	6.641e^-4	1	UTR_3_PRIME CG7544
3R	13867019	3R_13867019_SNP [dm3] 3R_18041297_SNP [dm6]	C	T	6.646e^-4	1	INTERGENIC
X	16710554	X_16710554_SNP [dm3] X_16816521_SNP [dm6]	T	C	6.648e^-4	1	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	10176131	2L_10176131_SNP [dm3] 2L_10176131_SNP [dm6]	G	A	6.672e^-4	1	INTRON CG44153
2R	11391557	2R_11391557_SNP [dm3] 2R_15504052_SNP [dm6]	T	A	6.673e^-4	1	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3R	10718900	3R_10718900_SNP [dm3] 3R_14893178_SNP [dm6]	G	A	6.673e^-4	1	SYNONYMOUS_CODING CG7265 DOWNSTREAM CG3731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10720894	3R_10720894_SNP [dm3] 3R_14895172_SNP [dm6]	G	C	6.673e^-4	1	NON_SYNONYMOUS_CODING CG14860 DOWNSTREAM Nup93-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10721246	3R_10721246_SNP [dm3] 3R_14895524_SNP [dm6]	G	T	6.673e^-4	1	NON_SYNONYMOUS_CODING CG14860 DOWNSTREAM Nup93-2	TF binding site mE1_TFBS_cad
3R	10721251	3R_10721251_SNP [dm3] 3R_14895529_SNP [dm6]	A	T	6.673e^-4	1	NON_SYNONYMOUS_CODING CG14860 DOWNSTREAM Nup93-2	TF binding site mE1_TFBS_cad
3R	22798357	3R_22798357_SNP [dm3] 3R_26972635_SNP [dm6]	G	T	6.673e^-4	1	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
3R	25306369	3R_25306369_SNP [dm3] 3R_29480647_SNP [dm6]	T	G	6.673e^-4	1	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	10901246	2L_10901246_INS [dm3] 2L_10901246_INS [dm6]	A	ACC	6.683e^-4	1	INTRON CG14070
3L	9330041	3L_9330041_SNP [dm3] 3L_9336941_SNP [dm6]	G	A	6.687e^-4	1	SPLICE_SITE_REGION PGRP-LA INTRON PGRP-LA
2L	13912732	2L_13912732_SNP [dm3] 2L_13912732_SNP [dm6]	C	T	6.695e^-4	1	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10453192	2R_10453192_SNP [dm3] 2R_14565687_SNP [dm6]	G	T	6.705e^-4	1	INTRON ttv
2R	10455014	2R_10455014_SNP [dm3] 2R_14567509_SNP [dm6]	G	A	6.705e^-4	1	INTRON ttv
2R	10455556	2R_10455556_SNP [dm3] 2R_14568051_SNP [dm6]	A	G	6.705e^-4	1	INTRON ttv
2R	10455831	2R_10455831_SNP [dm3] 2R_14568326_SNP [dm6]	T	C	6.705e^-4	1	INTRON ttv
3L	10371880	3L_10371880_SNP [dm3] 3L_10378780_SNP [dm6]	T	A	6.708e^-4	1	INTERGENIC
3L	10371882	3L_10371882_SNP [dm3] 3L_10378782_SNP [dm6]	A	T	6.708e^-4	1	INTERGENIC
2L	14077857	2L_14077857_DEL [dm3] 2L_14077857_DEL [dm6]	AA	A	6.714e^-4	1	INTRON nAChRalpha5
3L	680597	3L_680597_SNP [dm3] 3L_680597_SNP [dm6]	A	G	6.718e^-4	1	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	12929339	3R_12929339_SNP [dm3] 3R_17103617_SNP [dm6]	A	T	6.733e^-4	1	INTRON cher
3R	26541451	3R_26541451_SNP [dm3] 3R_30715729_SNP [dm6]	T	C	6.734e^-4	1	INTERGENIC
3R	26541452	3R_26541452_SNP [dm3] 3R_30715730_SNP [dm6]	T	C	6.734e^-4	1	INTERGENIC
2R	3475169	2R_3475169_SNP [dm3] 2R_7587664_SNP [dm6]	A	G	6.760e^-4	1	UPSTREAM blow DOWNSTREAM CG1360 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16413336	2R_16413336_SNP [dm3] 2R_20525831_SNP [dm6]	G	A	6.767e^-4	1	UPSTREAM CG13422 DOWNSTREAM CR44650 INTERGENIC
2R	16413782	2R_16413782_SNP [dm3] 2R_20526277_SNP [dm6]	G	A	6.767e^-4	1	UPSTREAM CG13422 DOWNSTREAM CR44650 INTERGENIC
3R	16139643	3R_16139643_SNP [dm3] 3R_20313921_SNP [dm6]	G	A	6.767e^-4	1	INTRON CG42668
3R	16139661	3R_16139661_SNP [dm3] 3R_20313939_SNP [dm6]	G	T	6.767e^-4	1	INTRON CG42668
2L	7839406	2L_7839406_INS [dm3] 2L_7839406_INS [dm6]	T	TCGGTT	6.780e^-4	1	DOWNSTREAM CR43100 INTERGENIC
2L	7539778	2L_7539778_SNP [dm3] 2L_7539778_SNP [dm6]	C	T	6.791e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17173311	2R_17173311_SNP [dm3] 2R_21285806_SNP [dm6]	T	C	6.797e^-4	1	NON_SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	18371699	2R_18371699_SNP [dm3] 2R_22484194_SNP [dm6]	T	A	6.802e^-4	1	SYNONYMOUS_CODING CG4554	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13256354	3R_13256354_SNP [dm3] 3R_17430632_SNP [dm6]	T	C	6.811e^-4	1	INTRON CG5873
3R	19806074	3R_19806074_SNP [dm3] 3R_23980352_SNP [dm6]	G	A	6.811e^-4	1	INTRON CG31140
3L	3523882	3L_3523882_SNP [dm3] 3L_3523882_SNP [dm6]	A	G	6.815e^-4	1	UPSTREAM CR45043 INTRON Eip63E
2R	17166827	2R_17166827_SNP [dm3] 2R_21279322_SNP [dm6]	T	A	6.824e^-4	1	INTRON Rgk3
3R	13244659	3R_13244659_SNP [dm3] 3R_17418937_SNP [dm6]	C	A	6.840e^-4	1	SYNONYMOUS_CODING CG42834 DOWNSTREAM CG33333
3R	13244664	3R_13244664_SNP [dm3] 3R_17418942_SNP [dm6]	T	C	6.840e^-4	1	NON_SYNONYMOUS_CODING CG42834 DOWNSTREAM CG33333
3R	13244674	3R_13244674_SNP [dm3] 3R_17418952_SNP [dm6]	A	G	6.840e^-4	1	SYNONYMOUS_CODING CG42834 DOWNSTREAM CG33333
3R	13244948	3R_13244948_SNP [dm3] 3R_17419226_SNP [dm6]	G	A	6.840e^-4	1	UTR_3_PRIME CG42834
3L	10966830	3L_10966830_SNP [dm3] 3L_10973730_SNP [dm6]	G	A	6.850e^-4	1	DOWNSTREAM CG14147 INTERGENIC
3L	17690345	3L_17690345_SNP [dm3] 3L_17697245_SNP [dm6]	G	A	6.875e^-4	1	INTRON Ccn
2L	3869220	2L_3869220_SNP [dm3] 2L_3869220_SNP [dm6]	G	A	6.877e^-4	1	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97	TF binding site mE1_TFBS_sens
2L	11045151	2L_11045151_SNP [dm3] 2L_11045151_SNP [dm6]	C	G	6.885e^-4	1	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18876967	3L_18876967_SNP [dm3] 3L_18883867_SNP [dm6]	A	G	6.896e^-4	1	INTRON CG3961
3L	5858021	3L_5858021_SNP [dm3] 3L_5864921_SNP [dm6]	C	T	6.897e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14498737	3L_14498737_SNP [dm3] 3L_14505637_SNP [dm6]	T	C	6.902e^-4	1	INTRON bbg
2L	2157561	2L_2157561_SNP [dm3] 2L_2157561_SNP [dm6]	G	C	6.904e^-4	1	UTR_3_PRIME aop DOWNSTREAM CG15382	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

SocialSpace phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results