DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.851e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08210
In_3R_P	0.02700
In_3R_K	0.02176
In_3R_Mo	0.09263

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	3.989	0.0458
In_3R_K	5.2677	0.0718

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1689 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11129980	3L_11129980_SNP [dm3] 3L_11136880_SNP [dm6]	A	G	2.090e^-6	0.688	INTRON CG32082
3L	18022443	3L_18022443_DEL [dm3] 3L_18029343_DEL [dm6]	AA	A	2.319e^-6	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11689258	3L_11689258_SNP [dm3] 3L_11696158_SNP [dm6]	A	G	3.597e^-6	0.688	DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12193272	2R_12193272_SNP [dm3] 2R_16305767_SNP [dm6]	T	C	3.612e^-6	0.688	EXON CR45232
3L	18022595	3L_18022595_SNP [dm3] 3L_18029495_SNP [dm6]	G	C	3.890e^-6	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16665773	3L_16665773_SNP [dm3] 3L_16672673_SNP [dm6]	A	C	4.759e^-6	0.688	INTRON zetaCOP
3L	18022389	3L_18022389_SNP [dm3] 3L_18029289_SNP [dm6]	T	G	5.315e^-6	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19598314	3R_19598314_SNP [dm3] 3R_23772592_SNP [dm6]	G	C	6.680e^-6	0.688	SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl
3R	10730554	3R_10730554_SNP [dm3] 3R_14904832_SNP [dm6]	T	A	6.931e^-6	0.688	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12057447	3R_12057447_INS [dm3] 3R_16231725_INS [dm6]	A	AC	7.497e^-6	0.688	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18022406	3L_18022406_SNP [dm3] 3L_18029306_SNP [dm6]	A	T	7.975e^-6	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	704377	3L_704377_SNP [dm3] 3L_704377_SNP [dm6]	T	A	8.429e^-6	0.688	UPSTREAM CR44514 INTERGENIC
3R	10729976	3R_10729976_SNP [dm3] 3R_14904254_SNP [dm6]	G	A	8.809e^-6	0.688	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	18022352	3L_18022352_SNP [dm3] 3L_18029252_SNP [dm6]	G	T	9.398e^-6	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18013709	3L_18013709_DEL [dm3] 3L_18020609_DEL [dm6]	ATTCGTTTTGCCA...	A	9.731e^-6	0.688	INTRON Eip75B
3R	23509152	3R_23509152_SNP [dm3] 3R_27683430_SNP [dm6]	G	T	1.009e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23561969	3R_23561969_DEL [dm3] 3R_27736247_DEL [dm6]	CCA	C	1.104e^-5	0.688	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16666372	3L_16666372_SNP [dm3] 3L_16673272_SNP [dm6]	A	G	1.160e^-5	0.688	SYNONYMOUS_CODING zetaCOP UPSTREAM CG13032	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12057398	3R_12057398_SNP [dm3] 3R_16231676_SNP [dm6]	T	A	1.180e^-5	0.688	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10729941	3R_10729941_SNP [dm3] 3R_14904219_SNP [dm6]	T	A	1.229e^-5	0.688	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	16665754	3L_16665754_SNP [dm3] 3L_16672654_SNP [dm6]	T	G	1.250e^-5	0.688	INTRON zetaCOP
3L	16665816	3L_16665816_SNP [dm3] 3L_16672716_SNP [dm6]	C	A	1.250e^-5	0.688	INTRON zetaCOP
3L	16665927	3L_16665927_SNP [dm3] 3L_16672827_SNP [dm6]	T	C	1.250e^-5	0.688	INTRON zetaCOP
3L	16665928	3L_16665928_INS [dm3] 3L_16672828_INS [dm6]	C	CTTAGATCATCCCATGCATA...	1.250e^-5	0.688	INTRON zetaCOP
3L	16665993	3L_16665993_SNP [dm3] 3L_16672893_SNP [dm6]	T	C	1.250e^-5	0.688	INTRON zetaCOP
3L	16666000	3L_16666000_SNP [dm3] 3L_16672900_SNP [dm6]	G	A	1.250e^-5	0.688	INTRON zetaCOP
3L	16666014	3L_16666014_SNP [dm3] 3L_16672914_SNP [dm6]	C	G	1.250e^-5	0.688	INTRON zetaCOP
3L	16666189	3L_16666189_SNP [dm3] 3L_16673089_SNP [dm6]	G	A	1.250e^-5	0.688	SYNONYMOUS_CODING zetaCOP UPSTREAM CG13032
3L	12560230	3L_12560230_SNP [dm3] 3L_12567130_SNP [dm6]	T	G	1.300e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560241	3L_12560241_SNP [dm3] 3L_12567141_SNP [dm6]	T	G	1.300e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560242	3L_12560242_SNP [dm3] 3L_12567142_SNP [dm6]	A	T	1.304e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18022354	3L_18022354_SNP [dm3] 3L_18029254_SNP [dm6]	G	T	1.309e^-5	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18050530	3L_18050530_SNP [dm3] 3L_18057430_SNP [dm6]	G	A	1.335e^-5	0.688	INTRON Eip75B
X	18531316	X_18531316_SNP [dm3] X_18637283_SNP [dm6]	T	C	1.373e^-5	0.688	INTRON Rip11	TF binding site mE1_TFBS_cad
3R	19306572	3R_19306572_SNP [dm3] 3R_23480850_SNP [dm6]	T	C	1.468e^-5	0.688	INTERGENIC
3L	18013977	3L_18013977_SNP [dm3] 3L_18020877_SNP [dm6]	T	C	1.491e^-5	0.688	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	18547144	2L_18547144_SNP [dm3] 2L_18547144_SNP [dm6]	T	C	1.710e^-5	0.688	INTRON Pde11
3L	16665916	3L_16665916_SNP [dm3] 3L_16672816_SNP [dm6]	C	T	1.818e^-5	0.688	INTRON zetaCOP
3L	18022368	3L_18022368_SNP [dm3] 3L_18029268_SNP [dm6]	T	A	1.899e^-5	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8800188	2L_8800188_SNP [dm3] 2L_8800188_SNP [dm6]	T	A	1.980e^-5	0.688	INTERGENIC
3L	16665669	3L_16665669_SNP [dm3] 3L_16672569_SNP [dm6]	T	A	1.998e^-5	0.688	INTRON zetaCOP
3L	16666042	3L_16666042_SNP [dm3] 3L_16672942_SNP [dm6]	A	C	1.998e^-5	0.688	INTRON zetaCOP
X	9756095	X_9756095_SNP [dm3] X_9862062_SNP [dm6]	C	T	2.097e^-5	0.688	INTERGENIC
2L	1269654	2L_1269654_INS [dm3] 2L_1269654_INS [dm6]	T	TT	2.103e^-5	0.688	INTRON robo3
3L	12560236	3L_12560236_DEL [dm3] 3L_12567136_DEL [dm6]	GT	C	2.269e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560239	3L_12560239_SNP [dm3] 3L_12567139_SNP [dm6]	T	A	2.269e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560245	3L_12560245_SNP [dm3] 3L_12567145_SNP [dm6]	A	C	2.269e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560248	3L_12560248_DEL [dm3] 3L_12567148_DEL [dm6]	AATAGTGATTAGCAGAAA...	A	2.269e^-5	0.688	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23684609	3R_23684609_SNP [dm3] 3R_27858887_SNP [dm6]	C	A	2.280e^-5	0.688	INTRON CG34353
3L	16515153	3L_16515153_SNP [dm3] 3L_16522053_SNP [dm6]	A	G	2.337e^-5	0.688	INTRON CG43373
X	18523432	X_18523432_SNP [dm3] X_18629399_SNP [dm6]	A	T	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18523436	X_18523436_SNP [dm3] X_18629403_SNP [dm6]	G	A	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18523812	X_18523812_SNP [dm3] X_18629779_SNP [dm6]	A	T	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18523813	X_18523813_SNP [dm3] X_18629780_SNP [dm6]	T	A	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18524934	X_18524934_SNP [dm3] X_18630901_SNP [dm6]	G	A	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18525216	X_18525216_SNP [dm3] X_18631183_SNP [dm6]	G	A	2.343e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18523349	X_18523349_SNP [dm3] X_18629316_SNP [dm6]	C	T	2.346e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18523350	X_18523350_SNP [dm3] X_18629317_SNP [dm6]	T	C	2.346e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18523424	X_18523424_SNP [dm3] X_18629391_SNP [dm6]	T	C	2.346e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	18524564	X_18524564_SNP [dm3] X_18630531_SNP [dm6]	A	G	2.346e^-5	0.688	INTRON wgn	TF binding site mE1_TFBS_chinmo
3L	18022453	3L_18022453_SNP [dm3] 3L_18029353_SNP [dm6]	T	A	2.352e^-5	0.688	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23559354	3R_23559354_SNP [dm3] 3R_27733632_SNP [dm6]	T	C	2.371e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1270669	2L_1270669_SNP [dm3] 2L_1270669_SNP [dm6]	G	A	2.382e^-5	0.688	INTRON robo3
2R	18319070	2R_18319070_SNP [dm3] 2R_22431565_SNP [dm6]	G	T	2.393e^-5	0.688	INTERGENIC
3L	12560234	3L_12560234_SNP [dm3] 3L_12567134_SNP [dm6]	T	G	2.642e^-5	0.727	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560305	3L_12560305_SNP [dm3] 3L_12567205_SNP [dm6]	C	T	2.708e^-5	0.727	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1880824	3R_1880824_SNP [dm3] 3R_6055102_SNP [dm6]	C	A	2.735e^-5	0.727	NON_SYNONYMOUS_CODING CG15580
3L	16665935	3L_16665935_SNP [dm3] 3L_16672835_SNP [dm6]	C	T	2.766e^-5	0.727	INTRON zetaCOP
3L	16665940	3L_16665940_SNP [dm3] 3L_16672840_SNP [dm6]	C	A	2.766e^-5	0.727	INTRON zetaCOP
3L	16666012	3L_16666012_SNP [dm3] 3L_16672912_SNP [dm6]	C	A	2.766e^-5	0.727	INTRON zetaCOP
3L	5970782	3L_5970782_DEL [dm3] 3L_5977682_DEL [dm6]	TT	T	2.837e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23474249	3R_23474249_SNP [dm3] 3R_27648527_SNP [dm6]	G	A	2.882e^-5	0.737	NON_SYNONYMOUS_CODING tau INTRON tau	TF binding site mE1_TFBS_chinmo
2R	7709289	2R_7709289_SNP [dm3] 2R_11821784_SNP [dm6]	C	T	3.102e^-5	0.769	INTERGENIC
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	3.124e^-5	0.769	INTRON Pde6
2L	17512095	2L_17512095_SNP [dm3] 2L_17512095_SNP [dm6]	G	A	3.141e^-5	0.769	SYNONYMOUS_CODING Dhc36C
3L	16666146	3L_16666146_SNP [dm3] 3L_16673046_SNP [dm6]	C	A	3.175e^-5	0.769	UPSTREAM CG13032 INTRON zetaCOP
3L	703931	3L_703931_SNP [dm3] 3L_703931_SNP [dm6]	A	G	3.315e^-5	0.782	INTERGENIC
3L	703939	3L_703939_SNP [dm3] 3L_703939_SNP [dm6]	A	C	3.315e^-5	0.782	INTERGENIC
2L	8584512	2L_8584512_SNP [dm3] 2L_8584512_SNP [dm6]	G	T	3.402e^-5	0.792	INTRON Sema-1a
3L	705693	3L_705693_DEL [dm3] 3L_705693_DEL [dm6]	AC	A	3.504e^-5	0.806	DOWNSTREAM CG13895 EXON CR44514
X	7939101	X_7939101_INS [dm3] X_8045068_INS [dm6]	C	CTC	3.557e^-5	0.808	DOWNSTREAM fs_1_h INTRON fs_1_h
X	18523474	X_18523474_SNP [dm3] X_18629441_SNP [dm6]	A	G	3.642e^-5	0.808	INTRON wgn	TF binding site mE1_TFBS_chinmo
X	3070071	X_3070071_SNP [dm3] X_3176038_SNP [dm6]	A	T	3.661e^-5	0.808	NON_SYNONYMOUS_CODING CG3939 UPSTREAM dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	11477328	2L_11477328_SNP [dm3] 2L_11477328_SNP [dm6]	C	T	3.726e^-5	0.808	INTERGENIC
3L	703790	3L_703790_DEL [dm3] 3L_703790_DEL [dm6]	GC	G	3.732e^-5	0.808	INTERGENIC
X	18523328	X_18523328_SNP [dm3] X_18629295_SNP [dm6]	A	T	3.794e^-5	0.812	INTRON wgn	TF binding site mE1_TFBS_chinmo
2R	6994166	2R_6994166_SNP [dm3] 2R_11106661_SNP [dm6]	A	T	4.023e^-5	0.848	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16515128	3L_16515128_SNP [dm3] 3L_16522028_SNP [dm6]	C	T	4.054e^-5	0.848	INTRON CG43373
3L	16665883	3L_16665883_INS [dm3] 3L_16672783_INS [dm6]	A	ATAAA	4.232e^-5	0.875	INTRON zetaCOP
3L	11224898	3L_11224898_SNP [dm3] 3L_11231798_SNP [dm6]	T	A	4.368e^-5	0.887	UPSTREAM CR45405 INTERGENIC
3R	13147523	3R_13147523_SNP [dm3] 3R_17321801_SNP [dm6]	G	T	4.510e^-5	0.887	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2515983	3L_2515983_SNP [dm3] 3L_2515983_SNP [dm6]	A	G	4.542e^-5	0.887	INTRON Spn
3L	3766762	3L_3766762_SNP [dm3] 3L_3766762_SNP [dm6]	C	T	4.576e^-5	0.887	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	19742113	2R_19742113_SNP [dm3] 2R_23854590_SNP [dm6]	T	A	4.686e^-5	0.887	SYNONYMOUS_CODING bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12895135	3L_12895135_SNP [dm3] 3L_12902035_SNP [dm6]	G	A	4.701e^-5	0.887	NON_SYNONYMOUS_CODING CG12520 DOWNSTREAM CG32117 INTRON CG12520
3R	24714808	3R_24714808_SNP [dm3] 3R_28889086_SNP [dm6]	G	A	4.705e^-5	0.887	UTR_5_PRIME Doa INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18014158	3L_18014158_SNP [dm3] 3L_18021058_SNP [dm6]	G	A	4.765e^-5	0.887	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	703929	3L_703929_SNP [dm3] 3L_703929_SNP [dm6]	T	A	4.897e^-5	0.887	INTERGENIC
3L	10681207	3L_10681207_SNP [dm3] 3L_10688107_SNP [dm6]	G	A	5.000e^-5	0.887	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21274443	3R_21274443_SNP [dm3] 3R_25448721_SNP [dm6]	A	T	5.096e^-5	0.887	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16665854	3L_16665854_DEL [dm3] 3L_16672754_DEL [dm6]	TT	T	5.203e^-5	0.887	INTRON zetaCOP
2L	3748587	2L_3748587_SNP [dm3] 2L_3748587_SNP [dm6]	T	G	5.271e^-5	0.887	INTRON CG10019
2L	1269858	2L_1269858_SNP [dm3] 2L_1269858_SNP [dm6]	A	T	5.492e^-5	0.887	INTRON robo3
3R	6972470	3R_6972470_SNP [dm3] 3R_11146748_SNP [dm6]	A	G	5.575e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3748459	2L_3748459_SNP [dm3] 2L_3748459_SNP [dm6]	A	T	5.629e^-5	0.887	INTRON CG10019
2L	3748471	2L_3748471_SNP [dm3] 2L_3748471_SNP [dm6]	C	A	5.629e^-5	0.887	INTRON CG10019
2L	3748475	2L_3748475_SNP [dm3] 2L_3748475_SNP [dm6]	A	C	5.629e^-5	0.887	INTRON CG10019
2L	8585120	2L_8585120_SNP [dm3] 2L_8585120_SNP [dm6]	A	T	5.757e^-5	0.887	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
X	18523334	X_18523334_INS [dm3] X_18629301_INS [dm6]	T	TT	5.843e^-5	0.887	INTRON wgn	TF binding site mE1_TFBS_chinmo
3R	23561868	3R_23561868_SNP [dm3] 3R_27736146_SNP [dm6]	G	T	5.884e^-5	0.887	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23561871	3R_23561871_SNP [dm3] 3R_27736149_SNP [dm6]	A	G	5.884e^-5	0.887	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23561886	3R_23561886_SNP [dm3] 3R_27736164_SNP [dm6]	A	G	5.884e^-5	0.887	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16665714	3L_16665714_SNP [dm3] 3L_16672614_SNP [dm6]	G	A	5.896e^-5	0.887	INTRON zetaCOP
2R	16848976	2R_16848976_SNP [dm3] 2R_20961471_SNP [dm6]	T	A	5.990e^-5	0.887	UPSTREAM hbn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	6.030e^-5	0.887	SYNONYMOUS_CODING Ir94e
2R	10706374	2R_10706374_SNP [dm3] 2R_14818869_SNP [dm6]	T	C	6.062e^-5	0.887	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22427871	3L_22427871_SNP [dm3] 3L_22434771_SNP [dm6]	A	C	6.138e^-5	0.887	INTERGENIC
3L	5459982	3L_5459982_SNP [dm3] 3L_5466882_SNP [dm6]	A	G	6.238e^-5	0.887	INTERGENIC
2L	8581453	2L_8581453_SNP [dm3] 2L_8581453_SNP [dm6]	C	T	6.370e^-5	0.887	INTRON Sema-1a
2R	13852031	2R_13852031_SNP [dm3] 2R_17964526_SNP [dm6]	G	A	6.416e^-5	0.887	INTERGENIC
2R	13477871	2R_13477871_DEL [dm3] 2R_17590366_DEL [dm6]	GG	G	6.437e^-5	0.887	UTR_5_PRIME RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18013677	3L_18013677_SNP [dm3] 3L_18020577_SNP [dm6]	A	G	6.578e^-5	0.887	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
X	18511662	X_18511662_SNP [dm3] X_18617629_SNP [dm6]	T	G	6.609e^-5	0.887	UPSTREAM CG15040 INTERGENIC
3R	13479872	3R_13479872_SNP [dm3] 3R_17654150_SNP [dm6]	A	T	6.636e^-5	0.887	UPSTREAM CR45223 INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16665827	3L_16665827_SNP [dm3] 3L_16672727_SNP [dm6]	T	A	6.713e^-5	0.887	INTRON zetaCOP
3L	16665829	3L_16665829_INS [dm3] 3L_16672729_INS [dm6]	G	TC	6.713e^-5	0.887	INTRON zetaCOP
2R	18747801	2R_18747801_SNP [dm3] 2R_22860278_SNP [dm6]	G	T	6.818e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13479870	3R_13479870_SNP [dm3] 3R_17654148_SNP [dm6]	C	A	6.845e^-5	0.887	UPSTREAM CR45223 INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16665921	3L_16665921_SNP [dm3] 3L_16672821_SNP [dm6]	A	T	6.874e^-5	0.887	INTRON zetaCOP
3L	16665922	3L_16665922_SNP [dm3] 3L_16672822_SNP [dm6]	A	G	6.874e^-5	0.887	INTRON zetaCOP
3L	5233786	3L_5233786_SNP [dm3] 3L_5240686_SNP [dm6]	G	A	6.970e^-5	0.887	INTRON shep
3R	23694697	3R_23694697_SNP [dm3] 3R_27868975_SNP [dm6]	C	A	7.056e^-5	0.887	INTRON CG34353
3R	23694698	3R_23694698_SNP [dm3] 3R_27868976_SNP [dm6]	G	A	7.056e^-5	0.887	INTRON CG34353
3R	10368938	3R_10368938_SNP [dm3] 3R_14543216_SNP [dm6]	G	C	7.134e^-5	0.887	INTRON Pde6
4	916350	4_916350_SNP [dm3] 4_895724_SNP [dm6]	C	G	7.141e^-5	0.887	INTRON unc-13	transposable element FlyBase
3L	18024426	3L_18024426_SNP [dm3] 3L_18031326_SNP [dm6]	A	G	7.282e^-5	0.887	INTRON Eip75B
2R	15473970	2R_15473970_SNP [dm3] 2R_19586465_SNP [dm6]	G	A	7.319e^-5	0.887	UPSTREAM CG42878 INTRON sm
X	8168151	X_8168151_SNP [dm3] X_8274118_SNP [dm6]	G	A	7.340e^-5	0.887	UPSTREAM CG15343 INTRON CG1636	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	8168164	X_8168164_SNP [dm3] X_8274131_SNP [dm6]	C	T	7.340e^-5	0.887	UPSTREAM CG15343 INTRON CG1636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18524384	X_18524384_SNP [dm3] X_18630351_SNP [dm6]	C	T	7.571e^-5	0.887	INTRON wgn	TF binding site mE1_TFBS_chinmo
2R	7709491	2R_7709491_DEL [dm3] 2R_11821986_DEL [dm6]	CCATTCCAGTGCCC...	C	7.607e^-5	0.887	INTERGENIC
3L	9808966	3L_9808966_SNP [dm3] 3L_9815866_SNP [dm6]	A	T	7.610e^-5	0.887	UPSTREAM CG43897 INTRON CG43897
3L	11130030	3L_11130030_SNP [dm3] 3L_11136930_SNP [dm6]	A	C	7.840e^-5	0.887	INTRON CG32082
X	18656247	X_18656247_SNP [dm3] X_18762214_SNP [dm6]	C	G	7.856e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17890448	2L_17890448_SNP [dm3] 2L_17890448_SNP [dm6]	A	G	7.930e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	7.956e^-5	0.887	INTERGENIC	transposable element FlyBase
2R	14339447	2R_14339447_SNP [dm3] 2R_18451942_SNP [dm6]	T	C	8.002e^-5	0.887	SYNONYMOUS_CODING CG5190 UPSTREAM Prp19 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9755901	X_9755901_SNP [dm3] X_9861868_SNP [dm6]	C	T	8.056e^-5	0.887	INTERGENIC
2R	3171364	2R_3171364_SNP [dm3] 2R_7283859_SNP [dm6]	T	G	8.081e^-5	0.887	INTRON pwn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25357894	3R_25357894_SNP [dm3] 3R_29532172_SNP [dm6]	A	C	8.084e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16906883	3L_16906883_SNP [dm3] 3L_16913783_SNP [dm6]	G	T	8.126e^-5	0.887	INTRON Lmpt
X	18530589	X_18530589_SNP [dm3] X_18636556_SNP [dm6]	G	T	8.179e^-5	0.887	INTRON Rip11
3R	16307184	3R_16307184_SNP [dm3] 3R_20481462_SNP [dm6]	T	C	8.192e^-5	0.887	START_GAINED Gfrl UTR_5_PRIME Gfrl INTRON Gfrl
X	20458396	X_20458396_SNP [dm3] X_20587369_SNP [dm6]	T	G	8.235e^-5	0.887	INTERGENIC
X	20458549	X_20458549_SNP [dm3] X_20587522_SNP [dm6]	T	C	8.235e^-5	0.887	INTERGENIC
2R	7699435	2R_7699435_SNP [dm3] 2R_11811930_SNP [dm6]	C	T	8.256e^-5	0.887	UTR_3_PRIME ths	TF binding site BDTNP1_TFBS_twi
3R	6953211	3R_6953211_SNP [dm3] 3R_11127489_SNP [dm6]	G	A	8.312e^-5	0.887	NON_SYNONYMOUS_CODING Ugt86Dd
3R	6975441	3R_6975441_SNP [dm3] 3R_11149719_SNP [dm6]	A	G	8.312e^-5	0.887	INTERGENIC
3R	19521849	3R_19521849_SNP [dm3] 3R_23696127_SNP [dm6]	T	C	8.352e^-5	0.887	DOWNSTREAM prt INTRON CG10252
3R	13166380	3R_13166380_INS [dm3] 3R_17340658_INS [dm6]	A	AAAAATACCGA...	8.459e^-5	0.887	INTRON beat-IIa
2L	12875118	2L_12875118_SNP [dm3] 2L_12875118_SNP [dm6]	T	C	8.569e^-5	0.887	INTERGENIC
X	7938694	X_7938694_SNP [dm3] X_8044661_SNP [dm6]	A	G	8.573e^-5	0.887	DOWNSTREAM fs_1_h INTRON fs_1_h
X	1043682	X_1043682_SNP [dm3] X_1149649_SNP [dm6]	T	C	8.709e^-5	0.887	INTERGENIC
3L	16665889	3L_16665889_SNP [dm3] 3L_16672789_SNP [dm6]	G	T	8.716e^-5	0.887	INTRON zetaCOP
3L	16665890	3L_16665890_SNP [dm3] 3L_16672790_SNP [dm6]	T	A	8.716e^-5	0.887	INTRON zetaCOP
3L	5459980	3L_5459980_SNP [dm3] 3L_5466880_SNP [dm6]	G	A	8.758e^-5	0.887	INTERGENIC
2R	10817977	2R_10817977_SNP [dm3] 2R_14930472_SNP [dm6]	G	T	8.840e^-5	0.887	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2481956	3L_2481956_SNP [dm3] 3L_2481956_SNP [dm6]	G	A	8.982e^-5	0.887	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11929723	2L_11929723_SNP [dm3] 2L_11929723_SNP [dm6]	G	A	9.136e^-5	0.887	INTERGENIC
4	839864	4_839864_SNP [dm3] 4_819238_SNP [dm6]	C	T	9.261e^-5	0.887	INTRON Sox102F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7709565	2R_7709565_SNP [dm3] 2R_11822060_SNP [dm6]	A	G	9.324e^-5	0.887	INTERGENIC
2L	3738888	2L_3738888_SNP [dm3] 2L_3738888_SNP [dm6]	G	A	9.472e^-5	0.887	INTRON CG10019
X	18533051	X_18533051_SNP [dm3] X_18639018_SNP [dm6]	T	C	9.739e^-5	0.887	SYNONYMOUS_CODING Rip11 INTRON Rip11	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	12258109	X_12258109_SNP [dm3] X_12364076_SNP [dm6]	C	A	9.802e^-5	0.887	INTERGENIC
3R	19588229	3R_19588229_SNP [dm3] 3R_23762507_SNP [dm6]	C	T	9.815e^-5	0.887	INTRON CG10217	TF binding site mE1_TFBS_sens
3R	26566472	3R_26566472_SNP [dm3] 3R_30740750_SNP [dm6]	T	A	9.815e^-5	0.887	INTERGENIC
3R	9652427	3R_9652427_SNP [dm3] 3R_13826705_SNP [dm6]	A	C	9.864e^-5	0.887	DOWNSTREAM Mst87F INTERGENIC
3L	12560246	3L_12560246_SNP [dm3] 3L_12567146_SNP [dm6]	G	T	1.002e^-4	0.887	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20428003	X_20428003_SNP [dm3] X_20556976_SNP [dm6]	A	G	1.004e^-4	0.887	INTRON RunxB
X	18525983	X_18525983_SNP [dm3] X_18631950_SNP [dm6]	G	A	1.004e^-4	0.887	INTRON wgn
3R	6990901	3R_6990901_SNP [dm3] 3R_11165179_SNP [dm6]	G	A	1.019e^-4	0.887	SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3R	23477058	3R_23477058_SNP [dm3] 3R_27651336_SNP [dm6]	C	T	1.020e^-4	0.887	UTR_3_PRIME tau UPSTREAM tau INTRON tau
3L	18050655	3L_18050655_SNP [dm3] 3L_18057555_SNP [dm6]	C	T	1.024e^-4	0.887	INTRON Eip75B
2R	13098007	2R_13098007_SNP [dm3] 2R_17210502_SNP [dm6]	A	G	1.024e^-4	0.887	INTERGENIC
3R	17918448	3R_17918448_SNP [dm3] 3R_22092726_SNP [dm6]	T	A	1.027e^-4	0.887	INTRON CG5778
X	18526006	X_18526006_SNP [dm3] X_18631973_SNP [dm6]	T	G	1.036e^-4	0.887	INTRON wgn
X	18527817	X_18527817_SNP [dm3] X_18633784_SNP [dm6]	C	A	1.036e^-4	0.887	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16230462	3R_16230462_SNP [dm3] 3R_20404740_SNP [dm6]	G	A	1.044e^-4	0.887	INTRON Gfrl
2L	16136371	2L_16136371_SNP [dm3] 2L_16136371_SNP [dm6]	A	T	1.046e^-4	0.887	UPSTREAM CR44871 INTERGENIC
3L	16665859	3L_16665859_SNP [dm3] 3L_16672759_SNP [dm6]	A	C	1.050e^-4	0.887	INTRON zetaCOP
3L	12895163	3L_12895163_SNP [dm3] 3L_12902063_SNP [dm6]	T	C	1.061e^-4	0.887	DOWNSTREAM CG32117 INTRON CG12520
3R	2616395	3R_2616395_SNP [dm3] 3R_6790673_SNP [dm6]	C	T	1.070e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	3472958	2L_3472958_SNP [dm3] 2L_3472958_SNP [dm6]	T	C	1.088e^-4	0.887	SYNONYMOUS_CODING pgant4 DOWNSTREAM CG31776	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	11902808	3R_11902808_SNP [dm3] 3R_16077086_SNP [dm6]	C	T	1.089e^-4	0.887	UPSTREAM Mhcl INTRON Mhcl
3R	23559160	3R_23559160_SNP [dm3] 3R_27733438_SNP [dm6]	T	A	1.091e^-4	0.887	INTERGENIC
3L	16906881	3L_16906881_SNP [dm3] 3L_16913781_SNP [dm6]	T	A	1.104e^-4	0.887	INTRON Lmpt
3L	16665845	3L_16665845_SNP [dm3] 3L_16672745_SNP [dm6]	T	C	1.110e^-4	0.887	INTRON zetaCOP
2R	7690750	2R_7690750_SNP [dm3] 2R_11803245_SNP [dm6]	A	G	1.112e^-4	0.887	INTRON ths
2L	8584814	2L_8584814_SNP [dm3] 2L_8584814_SNP [dm6]	G	A	1.121e^-4	0.887	INTRON Sema-1a
3L	1190368	3L_1190368_SNP [dm3] 3L_1190368_SNP [dm6]	T	A	1.125e^-4	0.887	UTR_3_PRIME CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
X	16516348	X_16516348_DEL [dm3] X_16622315_DEL [dm6]	TTGTATAATTTAACATTAT...	G	1.143e^-4	0.887	UPSTREAM CG9782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18528928	X_18528928_SNP [dm3] X_18634895_SNP [dm6]	T	C	1.150e^-4	0.887	UTR_5_PRIME wgn DOWNSTREAM Rip11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_Trl
2L	512473	2L_512473_SNP [dm3] 2L_512473_SNP [dm6]	A	C	1.161e^-4	0.887	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	18527866	X_18527866_SNP [dm3] X_18633833_SNP [dm6]	A	T	1.177e^-4	0.887	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7571547	2R_7571547_SNP [dm3] 2R_11684042_SNP [dm6]	A	G	1.185e^-4	0.887	DOWNSTREAM CG13196 INTRON Buffy
X	7455733	X_7455733_SNP [dm3] X_7561700_SNP [dm6]	G	A	1.201e^-4	0.887	INTERGENIC
X	7455738	X_7455738_SNP [dm3] X_7561705_SNP [dm6]	A	T	1.201e^-4	0.887	INTERGENIC
2R	15259879	2R_15259879_DEL [dm3] 2R_19372374_DEL [dm6]	CAC	C	1.222e^-4	0.887	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	18360355	2L_18360355_INS [dm3] 2L_18360355_INS [dm6]	C	CC	1.228e^-4	0.887	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14711844	3L_14711844_SNP [dm3] 3L_14718744_SNP [dm6]	T	G	1.229e^-4	0.887	INTRON ome
2L	17660667	2L_17660667_SNP [dm3] 2L_17660667_SNP [dm6]	T	A	1.242e^-4	0.887	INTRON CadN
4	843663	4_843663_SNP [dm3] 4_823037_SNP [dm6]	C	T	1.249e^-4	0.887	INTRON Sox102F	transposable element FlyBase
3R	25133232	3R_25133232_SNP [dm3] 3R_29307510_SNP [dm6]	G	A	1.258e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	16118332	2L_16118332_SNP [dm3] 2L_16118332_SNP [dm6]	A	T	1.264e^-4	0.887	INTERGENIC
X	7455902	X_7455902_SNP [dm3] X_7561869_SNP [dm6]	T	C	1.272e^-4	0.887	INTERGENIC
X	8436937	X_8436937_SNP [dm3] X_8542904_SNP [dm6]	G	C	1.281e^-4	0.887	INTRON Nrg
3R	27473164	3R_27473164_SNP [dm3] 3R_31647442_SNP [dm6]	G	A	1.284e^-4	0.887	INTRON kek6	TF binding site mE1_TFBS_chinmo
2R	9588075	2R_9588075_SNP [dm3] 2R_13700570_SNP [dm6]	T	A	1.285e^-4	0.887	INTRON fas
3R	2616324	3R_2616324_SNP [dm3] 3R_6790602_SNP [dm6]	A	G	1.289e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	23476999	3R_23476999_SNP [dm3] 3R_27651277_SNP [dm6]	T	G	1.293e^-4	0.887	UTR_3_PRIME tau UPSTREAM tau INTRON tau
4	903566	4_903566_SNP [dm3] 4_882940_SNP [dm6]	T	C	1.294e^-4	0.887	INTRON unc-13 EXON CR44029
2R	7690345	2R_7690345_SNP [dm3] 2R_11802840_SNP [dm6]	A	G	1.306e^-4	0.887	INTRON ths
X	22072974	X_22072974_SNP [dm3] X_22671138_SNP [dm6]	A	T	1.317e^-4	0.887	INTRON CR44997
3R	10018590	3R_10018590_SNP [dm3] 3R_14192868_SNP [dm6]	G	A	1.317e^-4	0.887	INTRON Dop1R1
2R	16930845	2R_16930845_DEL [dm3] 2R_21043340_DEL [dm6]	TT	C	1.335e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22220200	X_22220200_SNP [dm3] X_22818364_SNP [dm6]	T	C	1.342e^-4	0.887	INTERGENIC
2R	7709862	2R_7709862_SNP [dm3] 2R_11822357_SNP [dm6]	G	A	1.346e^-4	0.887	INTERGENIC
2R	17318773	2R_17318773_SNP [dm3] 2R_21431268_SNP [dm6]	G	A	1.362e^-4	0.887	INTRON Sdc
3L	10681264	3L_10681264_SNP [dm3] 3L_10688164_SNP [dm6]	G	A	1.366e^-4	0.887	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	19474031	3L_19474031_DEL [dm3] 3L_19480931_DEL [dm6]	CGA	C	1.372e^-4	0.887	INTERGENIC
3L	11689272	3L_11689272_SNP [dm3] 3L_11696172_SNP [dm6]	T	C	1.377e^-4	0.887	DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4181326	3L_4181326_SNP [dm3] 3L_4181326_SNP [dm6]	A	G	1.377e^-4	0.887	SYNONYMOUS_CODING Teh2 INTRON CG18675	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3589380	3R_3589380_SNP [dm3] 3R_7763658_SNP [dm6]	G	C	1.379e^-4	0.887	DOWNSTREAM Sp7 INTERGENIC
3R	16685212	3R_16685212_SNP [dm3] 3R_20859490_SNP [dm6]	C	T	1.387e^-4	0.887	SYNONYMOUS_CODING Ir93a DOWNSTREAM CG3822
3R	16685289	3R_16685289_SNP [dm3] 3R_20859567_SNP [dm6]	T	C	1.387e^-4	0.887	DOWNSTREAM CG3822 INTRON Ir93a
3R	16685295	3R_16685295_SNP [dm3] 3R_20859573_SNP [dm6]	T	A	1.387e^-4	0.887	DOWNSTREAM CG3822 INTRON Ir93a
3R	16685296	3R_16685296_SNP [dm3] 3R_20859574_SNP [dm6]	A	C	1.387e^-4	0.887	DOWNSTREAM CG3822 INTRON Ir93a
3R	16685298	3R_16685298_SNP [dm3] 3R_20859576_SNP [dm6]	T	C	1.387e^-4	0.887	DOWNSTREAM CG3822 INTRON Ir93a
3L	705755	3L_705755_SNP [dm3] 3L_705755_SNP [dm6]	G	C	1.387e^-4	0.887	DOWNSTREAM CG13895 & 1 other INTERGENIC
3L	12021606	3L_12021606_SNP [dm3] 3L_12028506_SNP [dm6]	T	A	1.395e^-4	0.887	DOWNSTREAM CR43994 INTRON rols
2R	16431943	2R_16431943_SNP [dm3] 2R_20544438_SNP [dm6]	G	T	1.396e^-4	0.887	INTERGENIC
3L	14711843	3L_14711843_SNP [dm3] 3L_14718743_SNP [dm6]	A	T	1.429e^-4	0.887	INTRON ome
2L	14352188	2L_14352188_SNP [dm3] 2L_14352188_SNP [dm6]	C	T	1.433e^-4	0.887	SYNONYMOUS_CODING CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
2L	2641945	2L_2641945_SNP [dm3] 2L_2641945_SNP [dm6]	C	A	1.433e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14734185	3L_14734185_SNP [dm3] 3L_14741085_SNP [dm6]	T	C	1.443e^-4	0.887	INTRON ome
3R	10548854	3R_10548854_SNP [dm3] 3R_14723132_SNP [dm6]	T	A	1.446e^-4	0.887	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18384296	3L_18384296_SNP [dm3] 3L_18391196_SNP [dm6]	G	A	1.449e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	1026006	4_1026006_SNP [dm3] 4_1005380_SNP [dm6]	T	A	1.466e^-4	0.887	INTRON toy	transposable element FlyBase
3R	23548341	3R_23548341_SNP [dm3] 3R_27722619_SNP [dm6]	G	A	1.486e^-4	0.887	INTERGENIC
2L	6982922	2L_6982922_SNP [dm3] 2L_6982922_SNP [dm6]	C	G	1.498e^-4	0.887	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	15582578	2R_15582578_SNP [dm3] 2R_19695073_SNP [dm6]	G	A	1.500e^-4	0.887	EXON CR44506	regulatory region REDfly_CRMs
2L	9671463	2L_9671463_SNP [dm3] 2L_9671463_SNP [dm6]	A	G	1.510e^-4	0.887	UPSTREAM CR44150 INTERGENIC
3R	23521009	3R_23521009_SNP [dm3] 3R_27695287_SNP [dm6]	C	T	1.517e^-4	0.887	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 1 other
X	10809696	X_10809696_SNP [dm3] X_10915663_SNP [dm6]	C	G	1.518e^-4	0.887	SYNONYMOUS_CODING CG43901 INTRON CG43901	TF binding site mE1_TFBS_chinmo
3R	17075192	3R_17075192_SNP [dm3] 3R_21249470_SNP [dm6]	G	C	1.534e^-4	0.887	INTRON ETHR
3R	23548751	3R_23548751_SNP [dm3] 3R_27723029_SNP [dm6]	A	C	1.538e^-4	0.887	INTERGENIC
2L	17660999	2L_17660999_SNP [dm3] 2L_17660999_SNP [dm6]	T	C	1.539e^-4	0.887	SYNONYMOUS_CODING CadN	TF binding site mE1_TFBS_cad
2L	3739351	2L_3739351_SNP [dm3] 2L_3739351_SNP [dm6]	G	C	1.554e^-4	0.887	INTRON CG10019
4	916925	4_916925_SNP [dm3] 4_896299_SNP [dm6]	G	A	1.557e^-4	0.887	INTRON unc-13
X	18523069	X_18523069_SNP [dm3] X_18629036_SNP [dm6]	A	C	1.583e^-4	0.887	SYNONYMOUS_CODING wgn	TF binding site mE1_TFBS_chinmo
3L	13210278	3L_13210278_SNP [dm3] 3L_13217178_SNP [dm6]	T	C	1.584e^-4	0.887	EXON CR43914	TF binding site BDTNP1_TFBS_prd
3R	23558068	3R_23558068_SNP [dm3] 3R_27732346_SNP [dm6]	C	G	1.588e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6106581	2R_6106581_SNP [dm3] 2R_10219076_SNP [dm6]	C	A	1.592e^-4	0.887	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18747913	2R_18747913_SNP [dm3] 2R_22860390_SNP [dm6]	G	A	1.605e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21463245	3L_21463245_SNP [dm3] 3L_21470145_SNP [dm6]	C	T	1.636e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	23510227	3R_23510227_SNP [dm3] 3R_27684505_SNP [dm6]	C	T	1.648e^-4	0.887	INTERGENIC
3L	478027	3L_478027_SNP [dm3] 3L_478027_SNP [dm6]	A	T	1.657e^-4	0.887	INTRON klar
2L	5021551	2L_5021551_INS [dm3] 2L_5021551_INS [dm6]	A	AATAC	1.657e^-4	0.887	INTRON vkg
2L	5021566	2L_5021566_INS [dm3] 2L_5021566_INS [dm6]	T	TGTAT	1.657e^-4	0.887	INTRON vkg
4	914523	4_914523_SNP [dm3] 4_893897_SNP [dm6]	T	G	1.658e^-4	0.887	UPSTREAM unc-13 INTRON unc-13
X	20691356	X_20691356_SNP [dm3] X_20820329_SNP [dm6]	C	T	1.676e^-4	0.887	INTRON shakB
3R	16680133	3R_16680133_SNP [dm3] 3R_20854411_SNP [dm6]	G	A	1.676e^-4	0.887	SYNONYMOUS_CODING Ir93a
3R	16680148	3R_16680148_SNP [dm3] 3R_20854426_SNP [dm6]	C	G	1.676e^-4	0.887	SPLICE_SITE_REGION Ir93a INTRON Ir93a
2L	17522145	2L_17522145_SNP [dm3] 2L_17522145_SNP [dm6]	C	T	1.678e^-4	0.887	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
3R	13147307	3R_13147307_SNP [dm3] 3R_17321585_SNP [dm6]	A	T	1.684e^-4	0.887	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	25902896	3R_25902896_SNP [dm3] 3R_30077174_SNP [dm6]	C	T	1.686e^-4	0.887	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24711113	3R_24711113_SNP [dm3] 3R_28885391_SNP [dm6]	C	T	1.687e^-4	0.887	SYNONYMOUS_CODING CG14526 INTRON CG33203
X	18524019	X_18524019_SNP [dm3] X_18629986_SNP [dm6]	C	A	1.688e^-4	0.887	INTRON wgn	TF binding site mE1_TFBS_chinmo
2R	18647510	2R_18647510_SNP [dm3] 2R_22760005_SNP [dm6]	C	G	1.689e^-4	0.887	SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad
3R	12779926	3R_12779926_SNP [dm3] 3R_16954204_SNP [dm6]	T	C	1.689e^-4	0.887	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	9835748	3L_9835748_SNP [dm3] 3L_9842648_SNP [dm6]	A	G	1.692e^-4	0.887	SYNONYMOUS_CODING RasGAP1
2R	9889542	2R_9889542_SNP [dm3] 2R_14002037_SNP [dm6]	T	C	1.699e^-4	0.887	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2053526	3L_2053526_SNP [dm3] 3L_2053526_SNP [dm6]	T	G	1.703e^-4	0.887	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3R	12073500	3R_12073500_SNP [dm3] 3R_16247778_SNP [dm6]	G	T	1.729e^-4	0.887	INTRON tara	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	9781806	2R_9781806_SNP [dm3] 2R_13894301_SNP [dm6]	C	T	1.731e^-4	0.887	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	726829	3L_726829_SNP [dm3] 3L_726829_SNP [dm6]	G	A	1.731e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	1946664	2R_1946664_SNP [dm3] 2R_6059159_SNP [dm6]	C	G	1.733e^-4	0.887	NON_SYNONYMOUS_CODING CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2932985	X_2932985_DEL [dm3] X_3038952_DEL [dm6]	AA	A	1.740e^-4	0.887	INTRON kirre
2R	13097810	2R_13097810_SNP [dm3] 2R_17210305_SNP [dm6]	A	C	1.740e^-4	0.887	INTERGENIC
2R	13097912	2R_13097912_SNP [dm3] 2R_17210407_SNP [dm6]	C	T	1.740e^-4	0.887	INTERGENIC
2R	13097933	2R_13097933_SNP [dm3] 2R_17210428_SNP [dm6]	C	T	1.740e^-4	0.887	INTERGENIC
2R	10189918	2R_10189918_SNP [dm3] 2R_14302413_SNP [dm6]	G	T	1.756e^-4	0.887	UPSTREAM tej INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13477884	2R_13477884_SNP [dm3] 2R_17590379_SNP [dm6]	G	A	1.763e^-4	0.887	UTR_5_PRIME RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13097831	2R_13097831_SNP [dm3] 2R_17210326_SNP [dm6]	G	T	1.771e^-4	0.887	INTERGENIC
2R	13097840	2R_13097840_SNP [dm3] 2R_17210335_SNP [dm6]	T	A	1.771e^-4	0.887	INTERGENIC
2R	13097844	2R_13097844_SNP [dm3] 2R_17210339_SNP [dm6]	A	G	1.771e^-4	0.887	INTERGENIC
2R	13097883	2R_13097883_SNP [dm3] 2R_17210378_SNP [dm6]	T	A	1.771e^-4	0.887	INTERGENIC
2R	13097893	2R_13097893_SNP [dm3] 2R_17210388_SNP [dm6]	C	T	1.771e^-4	0.887	INTERGENIC
2R	16930848	2R_16930848_SNP [dm3] 2R_21043343_SNP [dm6]	C	T	1.779e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16930853	2R_16930853_SNP [dm3] 2R_21043348_SNP [dm6]	C	A	1.779e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17901091	3L_17901091_SNP [dm3] 3L_17907991_SNP [dm6]	C	T	1.783e^-4	0.887	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Ubx
3R	13851373	3R_13851373_SNP [dm3] 3R_18025651_SNP [dm6]	G	A	1.790e^-4	0.887	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad
X	5529213	X_5529213_SNP [dm3] X_5635180_SNP [dm6]	A	T	1.791e^-4	0.887	INTRON CG42492
3R	2619688	3R_2619688_SNP [dm3] 3R_6793966_SNP [dm6]	G	C	1.792e^-4	0.887	INTRON Dfd
2L	8578138	2L_8578138_INS [dm3] 2L_8578138_INS [dm6]	A	ATTGATGCGTCCAAGAATA...	1.794e^-4	0.887	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18319179	2R_18319179_INS [dm3] 2R_22431674_INS [dm6]	A	AT	1.799e^-4	0.887	INTERGENIC
4	858728	4_858728_SNP [dm3] 4_838102_SNP [dm6]	C	T	1.803e^-4	0.887	NON_SYNONYMOUS_CODING fd102C	TF binding site mE1_TFBS_sens
4	914163	4_914163_SNP [dm3] 4_893537_SNP [dm6]	G	C	1.803e^-4	0.887	UTR_5_PRIME unc-13 INTRON unc-13
4	922385	4_922385_SNP [dm3] 4_901759_SNP [dm6]	G	T	1.803e^-4	0.887	SYNONYMOUS_CODING unc-13	TF binding site mE1_TFBS_sens
3L	18016865	3L_18016865_SNP [dm3] 3L_18023765_SNP [dm6]	A	C	1.811e^-4	0.887	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	1126757	2R_1126757_SNP [dm3] 2R_5239252_SNP [dm6]	G	A	1.814e^-4	0.887	INTRON Nipped-A	transposable element FlyBase
3R	2612902	3R_2612902_SNP [dm3] 3R_6787180_SNP [dm6]	T	C	1.820e^-4	0.887	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	13609557	3L_13609557_SNP [dm3] 3L_13616457_SNP [dm6]	A	G	1.820e^-4	0.887	INTRON bru-3
3R	24824660	3R_24824660_SNP [dm3] 3R_28998938_SNP [dm6]	G	C	1.824e^-4	0.887	INTRON wat
2L	18662973	2L_18662973_SNP [dm3] 2L_18662973_SNP [dm6]	T	C	1.830e^-4	0.887	INTERGENIC
2L	18663000	2L_18663000_SNP [dm3] 2L_18663000_SNP [dm6]	G	C	1.830e^-4	0.887	INTERGENIC
2R	8829061	2R_8829061_SNP [dm3] 2R_12941556_SNP [dm6]	G	A	1.833e^-4	0.887	SYNONYMOUS_CODING Mdr49
3L	20977749	3L_20977749_SNP [dm3] 3L_20984649_SNP [dm6]	T	G	1.845e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8383570	X_8383570_INS [dm3] X_8489537_INS [dm6]	A	ATAGA	1.846e^-4	0.887	UTR_5_PRIME CG33181 UPSTREAM CG33181 & 1 other	regulatory region REDfly_CRMs
4	905102	4_905102_SNP [dm3] 4_884476_SNP [dm6]	T	C	1.858e^-4	0.887	INTRON unc-13 EXON CR44029
3L	3885813	3L_3885813_SNP [dm3] 3L_3885813_SNP [dm6]	C	T	1.871e^-4	0.887	INTERGENIC
X	22075570	X_22075570_INS [dm3] X_22673734_INS [dm6]	A	AA	1.876e^-4	0.887	INTRON CR44997
X	18527285	X_18527285_SNP [dm3] X_18633252_SNP [dm6]	A	G	1.890e^-4	0.887	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14164551	3R_14164551_SNP [dm3] 3R_18338829_SNP [dm6]	A	G	1.903e^-4	0.887	INTRON CG15803
2R	19368128	2R_19368128_SNP [dm3] 2R_23480605_SNP [dm6]	C	G	1.926e^-4	0.887	INTRON CG43795
X	9233125	X_9233125_INS [dm3] X_9339092_INS [dm6]	T	TGCTGCTGCT	1.931e^-4	0.887	INTRON CG34449	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5721433	X_5721433_SNP [dm3] X_5827400_SNP [dm6]	A	G	1.944e^-4	0.887	INTRON CG15765
2L	8571934	2L_8571934_SNP [dm3] 2L_8571934_SNP [dm6]	G	A	1.963e^-4	0.887	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a
3L	11625233	3L_11625233_SNP [dm3] 3L_11632133_SNP [dm6]	T	C	1.965e^-4	0.887	DOWNSTREAM CR45158 INTRON CG32091
3R	24724418	3R_24724418_SNP [dm3] 3R_28898696_SNP [dm6]	G	A	1.981e^-4	0.887	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5021559	2L_5021559_SNP [dm3] 2L_5021559_SNP [dm6]	C	G	1.981e^-4	0.887	INTRON vkg
3R	24793149	3R_24793149_SNP [dm3] 3R_28967427_SNP [dm6]	A	C	1.987e^-4	0.887	INTRON CG14521
2L	4157348	2L_4157348_SNP [dm3] 2L_4157348_SNP [dm6]	A	T	1.987e^-4	0.887	INTERGENIC
2R	17152694	2R_17152694_SNP [dm3] 2R_21265189_SNP [dm6]	C	T	2.007e^-4	0.887	UTR_3_PRIME CG30391 INTRON Rgk3
2R	16896733	2R_16896733_SNP [dm3] 2R_21009228_SNP [dm6]	G	C	2.036e^-4	0.887	DOWNSTREAM grau INTRON CG30291	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	11285535	X_11285535_SNP [dm3] X_11391502_SNP [dm6]	G	T	2.040e^-4	0.887	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2R	20548806	2R_20548806_SNP [dm3] 2R_24661283_SNP [dm6]	A	C	2.041e^-4	0.887	UPSTREAM CG3663 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22877840	3R_22877840_SNP [dm3] 3R_27052118_SNP [dm6]	C	G	2.043e^-4	0.887	INTRON RYa-R
3L	18423971	3L_18423971_SNP [dm3] 3L_18430871_SNP [dm6]	A	C	2.049e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18013818	3L_18013818_SNP [dm3] 3L_18020718_SNP [dm6]	G	T	2.060e^-4	0.887	INTRON Eip75B
2R	13097876	2R_13097876_SNP [dm3] 2R_17210371_SNP [dm6]	A	C	2.065e^-4	0.887	INTERGENIC
2R	13097886	2R_13097886_SNP [dm3] 2R_17210381_SNP [dm6]	A	T	2.065e^-4	0.887	INTERGENIC
2R	16849258	2R_16849258_SNP [dm3] 2R_20961753_SNP [dm6]	C	T	2.094e^-4	0.887	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	21085263	2R_21085263_DEL [dm3] 2R_25197740_DEL [dm6]	AA	A	2.098e^-4	0.887	INTRON CG9380	TF binding site BDTNP1_TFBS_dl
3R	13550276	3R_13550276_SNP [dm3] 3R_17724554_SNP [dm6]	C	A	2.111e^-4	0.887	SYNONYMOUS_CODING Atg8b
X	1322678	X_1322678_DEL [dm3] X_1428645_DEL [dm6]	AGCCCAGCTTTGAATGCCAG...	A	2.113e^-4	0.887	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	17584697	2L_17584697_SNP [dm3] 2L_17584697_SNP [dm6]	G	A	2.114e^-4	0.887	DOWNSTREAM CR45112 & 1 other INTERGENIC
2L	17584698	2L_17584698_SNP [dm3] 2L_17584698_SNP [dm6]	G	A	2.114e^-4	0.887	DOWNSTREAM CR45112 & 1 other INTERGENIC
3L	14536874	3L_14536874_SNP [dm3] 3L_14543774_SNP [dm6]	A	T	2.120e^-4	0.887	INTRON CG9238
3R	22979965	3R_22979965_SNP [dm3] 3R_27154243_SNP [dm6]	T	C	2.154e^-4	0.887	SYNONYMOUS_CODING Men-b
2R	3080309	2R_3080309_SNP [dm3] 2R_7192804_SNP [dm6]	A	T	2.154e^-4	0.887	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
3R	6925539	3R_6925539_SNP [dm3] 3R_11099817_SNP [dm6]	C	T	2.156e^-4	0.887	INTERGENIC
2R	7708930	2R_7708930_SNP [dm3] 2R_11821425_SNP [dm6]	T	A	2.159e^-4	0.887	INTERGENIC
X	18652059	X_18652059_SNP [dm3] X_18758026_SNP [dm6]	G	A	2.162e^-4	0.887	INTERGENIC
2R	7628144	2R_7628144_SNP [dm3] 2R_11740639_SNP [dm6]	G	A	2.166e^-4	0.887	INTERGENIC
X	7882673	X_7882673_SNP [dm3] X_7988640_SNP [dm6]	T	C	2.169e^-4	0.887	INTERGENIC
2R	16382688	2R_16382688_SNP [dm3] 2R_20495183_SNP [dm6]	C	A	2.179e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5876584	X_5876584_SNP [dm3] X_5982551_SNP [dm6]	C	T	2.202e^-4	0.887	SYNONYMOUS_CODING Grip	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5876608	X_5876608_SNP [dm3] X_5982575_SNP [dm6]	G	A	2.202e^-4	0.887	SYNONYMOUS_CODING Grip	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5876629	X_5876629_SNP [dm3] X_5982596_SNP [dm6]	G	A	2.202e^-4	0.887	SPLICE_SITE_REGION Grip INTRON Grip	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7784665	2R_7784665_SNP [dm3] 2R_11897160_SNP [dm6]	G	A	2.215e^-4	0.887	SYNONYMOUS_CODING MCPH1	TF binding site mE1_TFBS_sens
2L	10873589	2L_10873589_SNP [dm3] 2L_10873589_SNP [dm6]	A	T	2.227e^-4	0.887	INTERGENIC
2R	13625466	2R_13625466_SNP [dm3] 2R_17737961_SNP [dm6]	T	C	2.228e^-4	0.887	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
3R	23841953	3R_23841953_SNP [dm3] 3R_28016231_SNP [dm6]	G	A	2.230e^-4	0.887	INTERGENIC
X	5529206	X_5529206_SNP [dm3] X_5635173_SNP [dm6]	A	C	2.231e^-4	0.887	INTRON CG42492
X	5529218	X_5529218_SNP [dm3] X_5635185_SNP [dm6]	G	A	2.231e^-4	0.887	INTRON CG42492
3R	14059045	3R_14059045_SNP [dm3] 3R_18233323_SNP [dm6]	C	A	2.233e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
3R	17075070	3R_17075070_SNP [dm3] 3R_21249348_SNP [dm6]	A	T	2.243e^-4	0.887	INTRON ETHR
2L	17052336	2L_17052336_SNP [dm3] 2L_17052336_SNP [dm6]	C	G	2.243e^-4	0.887	INTERGENIC
2L	12155104	2L_12155104_SNP [dm3] 2L_12155104_SNP [dm6]	G	T	2.245e^-4	0.887	INTRON CG31760
4	914443	4_914443_SNP [dm3] 4_893817_SNP [dm6]	T	A	2.246e^-4	0.887	UPSTREAM unc-13 INTRON unc-13
2R	7403502	2R_7403502_SNP [dm3] 2R_11515997_SNP [dm6]	C	T	2.252e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16927635	2R_16927635_DEL [dm3] 2R_21040130_DEL [dm6]	TTCGACTC	A	2.269e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18527796	X_18527796_SNP [dm3] X_18633763_SNP [dm6]	G	T	2.274e^-4	0.887	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2611592	3R_2611592_SNP [dm3] 3R_6785870_SNP [dm6]	A	T	2.274e^-4	0.887	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
2R	1934867	2R_1934867_SNP [dm3] 2R_6047362_SNP [dm6]	C	A	2.274e^-4	0.887	NON_SYNONYMOUS_CODING CG34211 EXON CR44130
2L	15047581	2L_15047581_SNP [dm3] 2L_15047581_SNP [dm6]	G	A	2.290e^-4	0.887	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3R	25988925	3R_25988925_SNP [dm3] 3R_30163203_SNP [dm6]	G	T	2.310e^-4	0.887	INTERGENIC
3R	25380288	3R_25380288_DEL [dm3] 3R_29554566_DEL [dm6]	TT	T	2.314e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16120020	2L_16120020_SNP [dm3] 2L_16120020_SNP [dm6]	A	G	2.317e^-4	0.887	INTERGENIC
3R	18966517	3R_18966517_SNP [dm3] 3R_23140795_SNP [dm6]	T	C	2.345e^-4	0.887	INTRON hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8541461	X_8541461_SNP [dm3] X_8647428_SNP [dm6]	T	C	2.354e^-4	0.887	INTRON oc
3R	13146519	3R_13146519_SNP [dm3] 3R_17320797_SNP [dm6]	G	C	2.358e^-4	0.887	NON_SYNONYMOUS_CODING beat-IIa
2L	19368139	2L_19368139_SNP [dm3] 2L_19368139_SNP [dm6]	C	A	2.366e^-4	0.887	INTERGENIC
2L	19368140	2L_19368140_SNP [dm3] 2L_19368140_SNP [dm6]	C	T	2.366e^-4	0.887	INTERGENIC
4	844187	4_844187_SNP [dm3] 4_823561_SNP [dm6]	C	T	2.367e^-4	0.887	SYNONYMOUS_CODING Sox102F
2L	7581288	2L_7581288_SNP [dm3] 2L_7581288_SNP [dm6]	A	G	2.375e^-4	0.887	UPSTREAM Spn28B INTERGENIC
2L	11477327	2L_11477327_SNP [dm3] 2L_11477327_SNP [dm6]	C	T	2.378e^-4	0.887	INTERGENIC
3R	18906421	3R_18906421_SNP [dm3] 3R_23080699_SNP [dm6]	C	T	2.379e^-4	0.887	INTRON CG13830
3L	17937317	3L_17937317_SNP [dm3] 3L_17944217_SNP [dm6]	T	A	2.385e^-4	0.887	INTRON CG43174
2R	6106592	2R_6106592_DEL [dm3] 2R_10219087_DEL [dm6]	AA	A	2.404e^-4	0.887	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25008935	3R_25008935_SNP [dm3] 3R_29183213_SNP [dm6]	C	T	2.414e^-4	0.887	INTRON CG14509
2R	10815776	2R_10815776_SNP [dm3] 2R_14928271_SNP [dm6]	G	T	2.420e^-4	0.887	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	13097789	2R_13097789_SNP [dm3] 2R_17210284_SNP [dm6]	G	A	2.425e^-4	0.887	INTERGENIC
3L	5460050	3L_5460050_SNP [dm3] 3L_5466950_SNP [dm6]	A	C	2.437e^-4	0.887	INTERGENIC
3L	704574	3L_704574_SNP [dm3] 3L_704574_SNP [dm6]	T	A	2.444e^-4	0.887	UPSTREAM CR44514 INTERGENIC
2R	7868470	2R_7868470_SNP [dm3] 2R_11980965_SNP [dm6]	A	G	2.447e^-4	0.887	UTR_3_PRIME CG33145 UPSTREAM CG30037	TF binding site BDTNP1_TFBS_da
3L	22962180	3L_22962180_SNP [dm3] 3L_22969080_SNP [dm6]	C	G	2.453e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	12451441	2L_12451441_SNP [dm3] 2L_12451441_SNP [dm6]	A	C	2.455e^-4	0.887	SYNONYMOUS_CODING Oatp33Eb DOWNSTREAM CG5418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17052333	2L_17052333_SNP [dm3] 2L_17052333_SNP [dm6]	T	A	2.458e^-4	0.887	INTERGENIC
2R	18319801	2R_18319801_SNP [dm3] 2R_22432296_SNP [dm6]	T	C	2.458e^-4	0.887	INTERGENIC
3R	23496117	3R_23496117_SNP [dm3] 3R_27670395_SNP [dm6]	A	C	2.462e^-4	0.887	INTRON unc80
3R	18819281	3R_18819281_DEL [dm3] 3R_22993559_DEL [dm6]	ACTGAGATGTCAGCTCTCTT...	A	2.462e^-4	0.887	UTR_5_PRIME Nha2 UPSTREAM Nha2 INTRON Nha2
3R	18819994	3R_18819994_SNP [dm3] 3R_22994272_SNP [dm6]	T	C	2.462e^-4	0.887	UPSTREAM Nha2 INTRON Nha2
2L	8578078	2L_8578078_SNP [dm3] 2L_8578078_SNP [dm6]	A	G	2.464e^-4	0.887	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13882671	2R_13882671_SNP [dm3] 2R_17995166_SNP [dm6]	T	A	2.475e^-4	0.887	INTRON dpr13
3R	15504236	3R_15504236_SNP [dm3] 3R_19678514_SNP [dm6]	T	C	2.477e^-4	0.887	INTRON Naam
2L	8797833	2L_8797833_SNP [dm3] 2L_8797833_SNP [dm6]	A	C	2.503e^-4	0.887	INTERGENIC
2L	4738339	2L_4738339_SNP [dm3] 2L_4738339_SNP [dm6]	C	T	2.511e^-4	0.887	SYNONYMOUS_CODING CG15630	TF binding site mE1_TFBS_inv
X	22072953	X_22072953_SNP [dm3] X_22671117_SNP [dm6]	C	T	2.525e^-4	0.887	INTRON CR44997
3R	6975124	3R_6975124_SNP [dm3] 3R_11149402_SNP [dm6]	A	G	2.560e^-4	0.887	INTERGENIC
3L	16665899	3L_16665899_DEL [dm3] 3L_16672799_DEL [dm6]	CC	C	2.567e^-4	0.887	INTRON zetaCOP
X	5557600	X_5557600_SNP [dm3] X_5663567_SNP [dm6]	G	T	2.574e^-4	0.887	UPSTREAM CG42265 EXON CR45520	TF binding site mE1_TFBS_HSA
3L	17067213	3L_17067213_SNP [dm3] 3L_17074113_SNP [dm6]	C	T	2.586e^-4	0.887	DOWNSTREAM Rbp6 INTRON Rbp6
2L	8567623	2L_8567623_SNP [dm3] 2L_8567623_SNP [dm6]	G	A	2.602e^-4	0.887	INTRON Sema-1a
2R	13098133	2R_13098133_SNP [dm3] 2R_17210628_SNP [dm6]	G	A	2.604e^-4	0.887	INTERGENIC
3R	19501621	3R_19501621_SNP [dm3] 3R_23675899_SNP [dm6]	A	T	2.608e^-4	0.887	INTERGENIC
2R	12485954	2R_12485954_SNP [dm3] 2R_16598449_SNP [dm6]	C	T	2.622e^-4	0.887	UPSTREAM CG5089 INTRON CG8303
2L	3969204	2L_3969204_SNP [dm3] 2L_3969204_SNP [dm6]	A	T	2.634e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6133832	2L_6133832_SNP [dm3] 2L_6133832_SNP [dm6]	C	T	2.635e^-4	0.887	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3634103	2L_3634103_SNP [dm3] 2L_3634103_SNP [dm6]	G	A	2.637e^-4	0.887	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	19434379	2L_19434379_SNP [dm3] 2L_19434379_SNP [dm6]	A	C	2.637e^-4	0.887	INTRON Rab9
2L	8571826	2L_8571826_SNP [dm3] 2L_8571826_SNP [dm6]	T	C	2.652e^-4	0.887	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a
2L	8571828	2L_8571828_SNP [dm3] 2L_8571828_SNP [dm6]	A	G	2.652e^-4	0.887	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a
2L	17890494	2L_17890494_SNP [dm3] 2L_17890494_SNP [dm6]	C	A	2.654e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19215446	3R_19215446_DEL [dm3] 3R_23389724_DEL [dm6]	GGTATATATG	G	2.663e^-4	0.887	UPSTREAM CG31515 & 1 other INTERGENIC
X	859029	X_859029_SNP [dm3] X_964996_SNP [dm6]	T	A	2.678e^-4	0.887	INTERGENIC
2R	13097859	2R_13097859_SNP [dm3] 2R_17210354_SNP [dm6]	A	G	2.702e^-4	0.887	INTERGENIC
3R	23498694	3R_23498694_SNP [dm3] 3R_27672972_SNP [dm6]	C	T	2.707e^-4	0.887	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
X	9604880	X_9604880_SNP [dm3] X_9710847_SNP [dm6]	G	A	2.711e^-4	0.887	INTERGENIC
X	18532122	X_18532122_SNP [dm3] X_18638089_SNP [dm6]	A	C	2.714e^-4	0.887	INTRON Rip11	TF binding site mE1_TFBS_cad
3R	9059524	3R_9059524_SNP [dm3] 3R_13233802_SNP [dm6]	T	A	2.728e^-4	0.887	INTRON Ace
2L	20775000	2L_20775000_SNP [dm3] 2L_20775000_SNP [dm6]	G	T	2.733e^-4	0.887	INTRON cad	TF binding site mE1_TFBS_cad
2L	3969109	2L_3969109_SNP [dm3] 2L_3969109_SNP [dm6]	G	A	2.748e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969182	2L_3969182_SNP [dm3] 2L_3969182_SNP [dm6]	A	G	2.748e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969199	2L_3969199_SNP [dm3] 2L_3969199_SNP [dm6]	T	A	2.748e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969271	2L_3969271_SNP [dm3] 2L_3969271_SNP [dm6]	G	T	2.748e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969328	2L_3969328_SNP [dm3] 2L_3969328_SNP [dm6]	G	A	2.748e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	2.748e^-4	0.887	INTRON CG8861
3R	18192188	3R_18192188_SNP [dm3] 3R_22366466_SNP [dm6]	A	G	2.752e^-4	0.887	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	20617604	3R_20617604_SNP [dm3] 3R_24791882_SNP [dm6]	C	T	2.785e^-4	0.887	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo
X	13403304	X_13403304_SNP [dm3] X_13509271_SNP [dm6]	C	G	2.791e^-4	0.887	INTRON Neto
2L	19581797	2L_19581797_SNP [dm3] 2L_19581797_SNP [dm6]	C	T	2.807e^-4	0.887	SYNONYMOUS_CODING Hakai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21257250	3R_21257250_SNP [dm3] 3R_25431528_SNP [dm6]	A	G	2.808e^-4	0.887	INTRON Fur1
2L	4162065	2L_4162065_SNP [dm3] 2L_4162065_SNP [dm6]	C	T	2.809e^-4	0.887	INTERGENIC
X	22075766	X_22075766_SNP [dm3] X_22673930_SNP [dm6]	C	T	2.832e^-4	0.887	INTRON CR44997
3R	21147468	3R_21147468_SNP [dm3] 3R_25321746_SNP [dm6]	C	T	2.858e^-4	0.887	SYNONYMOUS_CODING CG10562	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8859865	3L_8859865_SNP [dm3] 3L_8866765_SNP [dm6]	G	A	2.882e^-4	0.887	INTRON dally
3L	5408021	3L_5408021_SNP [dm3] 3L_5414921_SNP [dm6]	G	A	2.884e^-4	0.887	INTERGENIC
2L	2495257	2L_2495257_SNP [dm3] 2L_2495257_SNP [dm6]	C	G	2.896e^-4	0.887	INTRON oaf	TF binding site mE1_TFBS_HSA
X	18518149	X_18518149_SNP [dm3] X_18624116_SNP [dm6]	A	T	2.899e^-4	0.887	UTR_3_PRIME wgn
2L	8797838	2L_8797838_SNP [dm3] 2L_8797838_SNP [dm6]	C	T	2.901e^-4	0.887	INTERGENIC
3R	23525425	3R_23525425_SNP [dm3] 3R_27699703_SNP [dm6]	C	T	2.930e^-4	0.887	UPSTREAM btz INTRON ALiX	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2743722	2L_2743722_SNP [dm3] 2L_2743722_SNP [dm6]	T	C	2.931e^-4	0.887	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	9696133	2L_9696133_SNP [dm3] 2L_9696133_SNP [dm6]	C	A	2.935e^-4	0.887	INTRON Pka-C1
2R	19071246	2R_19071246_SNP [dm3] 2R_23183723_SNP [dm6]	T	C	2.951e^-4	0.887	UPSTREAM CG13539 INTRON CG34371
2R	19742104	2R_19742104_SNP [dm3] 2R_23854581_SNP [dm6]	G	A	2.951e^-4	0.887	SYNONYMOUS_CODING bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8872478	3L_8872478_SNP [dm3] 3L_8879378_SNP [dm6]	C	G	2.967e^-4	0.887	INTRON dally
3L	14951365	3L_14951365_SNP [dm3] 3L_14958265_SNP [dm6]	A	G	2.977e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	8833754	2R_8833754_SNP [dm3] 2R_12946249_SNP [dm6]	G	A	2.980e^-4	0.887	UTR_5_PRIME Mdr49	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6960101	3R_6960101_SNP [dm3] 3R_11134379_SNP [dm6]	C	A	2.986e^-4	0.887	INTERGENIC
3R	23501144	3R_23501144_SNP [dm3] 3R_27675422_SNP [dm6]	C	T	3.012e^-4	0.887	INTRON unc80	TF binding site mE1_TFBS_chinmo
3L	2572226	3L_2572226_SNP [dm3] 3L_2572226_SNP [dm6]	G	T	3.029e^-4	0.887	INTRON msn
3R	1160180	3R_1160180_SNP [dm3] 3R_5334458_SNP [dm6]	C	T	3.043e^-4	0.887	SYNONYMOUS_CODING mtd INTRON mtd
3L	14536892	3L_14536892_SNP [dm3] 3L_14543792_SNP [dm6]	A	T	3.050e^-4	0.887	INTRON CG9238
3R	8608795	3R_8608795_SNP [dm3] 3R_12783073_SNP [dm6]	C	A	3.056e^-4	0.887	UTR_5_PRIME beat-Vc
3R	2681248	3R_2681248_SNP [dm3] 3R_6855526_SNP [dm6]	G	A	3.061e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15434648	2L_15434648_SNP [dm3] 2L_15434648_SNP [dm6]	C	G	3.065e^-4	0.887	SYNONYMOUS_CODING CG4161	TF binding site mE1_TFBS_sens
2R	13476399	2R_13476399_SNP [dm3] 2R_17588894_SNP [dm6]	G	C	3.067e^-4	0.887	INTRON RhoGAP54D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19925333	2R_19925333_SNP [dm3] 2R_24037810_SNP [dm6]	T	A	3.087e^-4	0.887	UTR_5_PRIME Not11 UPSTREAM IntS1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18423960	3L_18423960_DEL [dm3] 3L_18430860_DEL [dm6]	TGTAAGATT	T	3.091e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18423972	3L_18423972_SNP [dm3] 3L_18430872_SNP [dm6]	T	A	3.091e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22853214	3R_22853214_SNP [dm3] 3R_27027492_SNP [dm6]	T	G	3.093e^-4	0.887	INTRON RYa-R
3R	9532608	3R_9532608_SNP [dm3] 3R_13706886_SNP [dm6]	A	T	3.098e^-4	0.887	UTR_5_PRIME Adgf-C
3L	16667697	3L_16667697_SNP [dm3] 3L_16674597_SNP [dm6]	G	A	3.101e^-4	0.887	SYNONYMOUS_CODING CG13032	TF binding site mE1_TFBS_sens
3L	16668890	3L_16668890_SNP [dm3] 3L_16675790_SNP [dm6]	C	T	3.101e^-4	0.887	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_inv
3L	3743795	3L_3743795_SNP [dm3] 3L_3743795_SNP [dm6]	A	C	3.112e^-4	0.887	INTRON CG32264
X	18524362	X_18524362_SNP [dm3] X_18630329_SNP [dm6]	G	T	3.121e^-4	0.887	INTRON wgn	TF binding site mE1_TFBS_chinmo
4	913402	4_913402_SNP [dm3] 4_892776_SNP [dm6]	C	A	3.126e^-4	0.887	SYNONYMOUS_CODING unc-13 INTRON unc-13
3R	9548115	3R_9548115_SNP [dm3] 3R_13722393_SNP [dm6]	A	T	3.133e^-4	0.887	INTRON CG34383
3L	7871616	3L_7871616_INS [dm3] 3L_7878516_INS [dm6]	T	TCAT	3.138e^-4	0.887	INTRON CG32365
2R	18651152	2R_18651152_SNP [dm3] 2R_22763647_SNP [dm6]	G	T	3.139e^-4	0.887	UPSTREAM CG13527 INTRON CG42260
3R	6526551	3R_6526551_SNP [dm3] 3R_10700829_SNP [dm6]	C	A	3.142e^-4	0.887	INTRON pug	TF binding site mE1_TFBS_chinmo
X	17239227	X_17239227_SNP [dm3] X_17345194_SNP [dm6]	T	C	3.153e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8567709	2L_8567709_SNP [dm3] 2L_8567709_SNP [dm6]	A	G	3.162e^-4	0.887	INTRON Sema-1a
2L	8567741	2L_8567741_SNP [dm3] 2L_8567741_SNP [dm6]	G	T	3.162e^-4	0.887	INTRON Sema-1a
2L	8567786	2L_8567786_SNP [dm3] 2L_8567786_SNP [dm6]	C	G	3.162e^-4	0.887	INTRON Sema-1a	TF binding site mE1_TFBS_HSA
X	18817779	X_18817779_MNP [dm3] X_18923746_MNP [dm6]	GAGT	CTTA	3.173e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18817796	X_18817796_SNP [dm3] X_18923763_SNP [dm6]	T	A	3.173e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18817797	X_18817797_SNP [dm3] X_18923764_SNP [dm6]	A	C	3.173e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18817801	X_18817801_SNP [dm3] X_18923768_SNP [dm6]	G	T	3.173e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12665947	3R_12665947_SNP [dm3] 3R_16840225_SNP [dm6]	G	C	3.176e^-4	0.887	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4936059	3R_4936059_SNP [dm3] 3R_9110337_SNP [dm6]	G	T	3.181e^-4	0.887	INTRON pum
2L	13616885	2L_13616885_SNP [dm3] 2L_13616885_SNP [dm6]	C	T	3.197e^-4	0.887	INTRON kuz
X	6905903	X_6905903_SNP [dm3] X_7011870_SNP [dm6]	T	A	3.197e^-4	0.887	NON_SYNONYMOUS_CODING CG32736 UTR_5_PRIME CG42308 UPSTREAM cm DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2791957	2L_2791957_SNP [dm3] 2L_2791957_SNP [dm6]	G	A	3.209e^-4	0.887	INTRON Syt1
3R	16314658	3R_16314658_INS [dm3] 3R_20488936_INS [dm6]	T	TTACC	3.212e^-4	0.887	INTERGENIC
2L	8571903	2L_8571903_SNP [dm3] 2L_8571903_SNP [dm6]	T	A	3.218e^-4	0.887	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a
3L	17941004	3L_17941004_SNP [dm3] 3L_17947904_SNP [dm6]	T	A	3.224e^-4	0.887	UPSTREAM CR45393 INTERGENIC
3R	19598301	3R_19598301_SNP [dm3] 3R_23772579_SNP [dm6]	G	T	3.232e^-4	0.887	NON_SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl
3R	13166381	3R_13166381_DEL [dm3] 3R_17340659_DEL [dm6]	CTGTCGGT	C	3.235e^-4	0.887	INTRON beat-IIa
3R	25133230	3R_25133230_SNP [dm3] 3R_29307508_SNP [dm6]	A	C	3.252e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	2617258	3R_2617258_SNP [dm3] 3R_6791536_SNP [dm6]	A	G	3.255e^-4	0.887	UPSTREAM Dfd INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23519016	3R_23519016_SNP [dm3] 3R_27693294_SNP [dm6]	T	A	3.260e^-4	0.887	DOWNSTREAM CG12880 INTERGENIC
3L	12420851	3L_12420851_SNP [dm3] 3L_12427751_SNP [dm6]	A	C	3.263e^-4	0.887	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	19566366	3R_19566366_SNP [dm3] 3R_23740644_SNP [dm6]	C	A	3.265e^-4	0.887	INTRON Hmgcr
2R	12338226	2R_12338226_SNP [dm3] 2R_16450721_SNP [dm6]	T	C	3.272e^-4	0.887	INTERGENIC
3L	5460205	3L_5460205_SNP [dm3] 3L_5467105_SNP [dm6]	T	C	3.275e^-4	0.887	INTERGENIC
3L	3913600	3L_3913600_SNP [dm3] 3L_3913600_SNP [dm6]	A	G	3.280e^-4	0.887	INTRON Eip63F-1
2R	7691438	2R_7691438_SNP [dm3] 2R_11803933_SNP [dm6]	C	A	3.304e^-4	0.887	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6133846	2L_6133846_SNP [dm3] 2L_6133846_SNP [dm6]	T	C	3.312e^-4	0.887	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	2924885	3L_2924885_SNP [dm3] 3L_2924885_SNP [dm6]	T	A	3.314e^-4	0.887	SYNONYMOUS_CODING Shab	TF binding site mE1_TFBS_chinmo
X	22219955	X_22219955_SNP [dm3] X_22818119_SNP [dm6]	A	G	3.324e^-4	0.887	INTERGENIC
3R	23510868	3R_23510868_SNP [dm3] 3R_27685146_SNP [dm6]	A	G	3.328e^-4	0.887	UPSTREAM CG12880 DOWNSTREAM CG31055 INTERGENIC
2R	16930855	2R_16930855_SNP [dm3] 2R_21043350_SNP [dm6]	G	A	3.336e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
4	851737	4_851737_SNP [dm3] 4_831111_SNP [dm6]	A	G	3.348e^-4	0.887	INTRON Sox102F
2R	10332499	2R_10332499_SNP [dm3] 2R_14444994_SNP [dm6]	A	G	3.353e^-4	0.887	INTRON Oaz
3R	22977380	3R_22977380_SNP [dm3] 3R_27151658_SNP [dm6]	T	C	3.354e^-4	0.887	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	13749123	3R_13749123_SNP [dm3] 3R_17923401_SNP [dm6]	T	G	3.355e^-4	0.887	INTRON cpo
3L	14536915	3L_14536915_SNP [dm3] 3L_14543815_SNP [dm6]	A	C	3.358e^-4	0.887	INTRON CG9238
X	17351574	X_17351574_SNP [dm3] X_17457541_SNP [dm6]	G	T	3.387e^-4	0.887	UTR_3_PRIME CG43658
X	17674193	X_17674193_SNP [dm3] X_17780160_SNP [dm6]	T	C	3.387e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3885658	3L_3885658_SNP [dm3] 3L_3885658_SNP [dm6]	A	G	3.389e^-4	0.887	UPSTREAM CR43917 INTERGENIC
3L	18182225	3L_18182225_SNP [dm3] 3L_18189125_SNP [dm6]	C	G	3.397e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18013653	3L_18013653_SNP [dm3] 3L_18020553_SNP [dm6]	C	A	3.407e^-4	0.887	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
X	18520155	X_18520155_SNP [dm3] X_18626122_SNP [dm6]	G	C	3.415e^-4	0.887	SYNONYMOUS_CODING wgn INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
4	960123	4_960123_SNP [dm3] 4_939497_SNP [dm6]	C	T	3.415e^-4	0.887	INTRON mGluR
2L	13315368	2L_13315368_SNP [dm3] 2L_13315368_SNP [dm6]	A	T	3.419e^-4	0.887	INTRON CG43778	TF binding site mE1_TFBS_HSA
3R	4948176	3R_4948176_SNP [dm3] 3R_9122454_SNP [dm6]	G	A	3.425e^-4	0.887	INTRON pum
3R	9550341	3R_9550341_SNP [dm3] 3R_13724619_SNP [dm6]	A	G	3.429e^-4	0.887	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	14951242	3L_14951242_SNP [dm3] 3L_14958142_SNP [dm6]	C	T	3.429e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	3969325	2L_3969325_SNP [dm3] 2L_3969325_SNP [dm6]	T	G	3.430e^-4	0.887	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3635062	2L_3635062_SNP [dm3] 2L_3635062_SNP [dm6]	A	C	3.434e^-4	0.887	INTRON for
3R	13148095	3R_13148095_SNP [dm3] 3R_17322373_SNP [dm6]	C	T	3.435e^-4	0.887	INTRON beat-IIa
4	920556	4_920556_SNP [dm3] 4_899930_SNP [dm6]	T	C	3.435e^-4	0.887	NON_SYNONYMOUS_CODING unc-13
2L	4149306	2L_4149306_SNP [dm3] 2L_4149306_SNP [dm6]	A	G	3.437e^-4	0.887	UTR_5_PRIME CG2955
2R	7812391	2R_7812391_SNP [dm3] 2R_11924886_SNP [dm6]	A	G	3.453e^-4	0.887	INTERGENIC
3L	18050651	3L_18050651_SNP [dm3] 3L_18057551_SNP [dm6]	A	T	3.453e^-4	0.887	INTRON Eip75B
3R	16606829	3R_16606829_SNP [dm3] 3R_20781107_SNP [dm6]	C	A	3.454e^-4	0.887	INTRON Syp
3R	20824570	3R_20824570_SNP [dm3] 3R_24998848_SNP [dm6]	T	C	3.466e^-4	0.887	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15469553	2R_15469553_SNP [dm3] 2R_19582048_SNP [dm6]	C	T	3.467e^-4	0.887	INTRON sm
2R	15469560	2R_15469560_SNP [dm3] 2R_19582055_SNP [dm6]	C	T	3.467e^-4	0.887	INTRON sm
X	18533858	X_18533858_SNP [dm3] X_18639825_SNP [dm6]	A	G	3.477e^-4	0.887	SYNONYMOUS_CODING Rip11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18385942	3L_18385942_SNP [dm3] 3L_18392842_SNP [dm6]	A	T	3.478e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7549408	X_7549408_DEL [dm3] X_7655375_DEL [dm6]	TT	C	3.492e^-4	0.887	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16666119	3L_16666119_DEL [dm3] 3L_16673019_DEL [dm6]	TG	T	3.493e^-4	0.887	UPSTREAM CG13032 INTRON zetaCOP
3L	17901131	3L_17901131_SNP [dm3] 3L_17908031_SNP [dm6]	G	T	3.499e^-4	0.887	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2R	13824975	2R_13824975_SNP [dm3] 2R_17937470_SNP [dm6]	G	C	3.516e^-4	0.887	INTERGENIC
3L	9259064	3L_9259064_SNP [dm3] 3L_9265964_SNP [dm6]	G	T	3.521e^-4	0.887	INTRON GluRIB
3R	25803734	3R_25803734_SNP [dm3] 3R_29978012_SNP [dm6]	C	T	3.532e^-4	0.887	INTERGENIC
3R	19674044	3R_19674044_SNP [dm3] 3R_23848322_SNP [dm6]	T	C	3.534e^-4	0.887	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad
3R	24774151	3R_24774151_SNP [dm3] 3R_28948429_SNP [dm6]	A	G	3.539e^-4	0.887	INTRON CG14521
2L	17618982	2L_17618982_SNP [dm3] 2L_17618982_SNP [dm6]	A	G	3.545e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_inv
2L	3403550	2L_3403550_DEL [dm3] 2L_3403550_DEL [dm6]	TTCC	T	3.548e^-4	0.887	DOWNSTREAM pgant2 INTERGENIC
3R	22024183	3R_22024183_SNP [dm3] 3R_26198461_SNP [dm6]	C	T	3.550e^-4	0.887	INTRON CR44320
2R	19131983	2R_19131983_SNP [dm3] 2R_23244460_SNP [dm6]	G	C	3.559e^-4	0.887	SYNONYMOUS_CODING yip3
2R	3077858	2R_3077858_SNP [dm3] 2R_7190353_SNP [dm6]	T	A	3.569e^-4	0.887	INTRON pk	TF binding site mE1_TFBS_cad
3R	4646984	3R_4646984_SNP [dm3] 3R_8821262_SNP [dm6]	T	C	3.575e^-4	0.887	UPSTREAM CG9821 & 1 other DOWNSTREAM CR43130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6593723	2L_6593723_SNP [dm3] 2L_6593723_SNP [dm6]	T	A	3.575e^-4	0.887	INTRON CG11319
2R	9795967	2R_9795967_SNP [dm3] 2R_13908462_SNP [dm6]	G	C	3.577e^-4	0.887	INTRON shot	TF binding site mE1_TFBS_cad
X	12017463	X_12017463_SNP [dm3] X_12123430_SNP [dm6]	A	C	3.579e^-4	0.887	INTRON Ten-a
3R	16242433	3R_16242433_SNP [dm3] 3R_20416711_SNP [dm6]	C	T	3.585e^-4	0.887	INTRON Gfrl
3L	11643873	3L_11643873_DEL [dm3] 3L_11650773_DEL [dm6]	AA	A	3.590e^-4	0.887	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
3L	6666100	3L_6666100_SNP [dm3] 3L_6673000_SNP [dm6]	T	G	3.592e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
3L	10681015	3L_10681015_SNP [dm3] 3L_10687915_SNP [dm6]	G	A	3.594e^-4	0.887	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10730044	3R_10730044_DEL [dm3] 3R_14904322_DEL [dm6]	TT	T	3.602e^-4	0.887	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	2873547	2L_2873547_SNP [dm3] 2L_2873547_SNP [dm6]	C	A	3.612e^-4	0.887	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6506088	3L_6506088_SNP [dm3] 3L_6512988_SNP [dm6]	C	T	3.618e^-4	0.887	INTRON sfl
3L	3981070	3L_3981070_SNP [dm3] 3L_3981070_SNP [dm6]	T	A	3.621e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	18905657	3R_18905657_SNP [dm3] 3R_23079935_SNP [dm6]	G	A	3.654e^-4	0.887	INTRON CG13830
3R	21777419	3R_21777419_INS [dm3] 3R_25951697_INS [dm6]	T	TT	3.679e^-4	0.887	INTRON CCAP-R
2L	3967044	2L_3967044_SNP [dm3] 2L_3967044_SNP [dm6]	C	T	3.691e^-4	0.887	INTRON fred
2R	7364347	2R_7364347_SNP [dm3] 2R_11476842_SNP [dm6]	T	C	3.693e^-4	0.887	SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	18516784	X_18516784_SNP [dm3] X_18622751_SNP [dm6]	A	G	3.708e^-4	0.887	UPSTREAM CR44705 DOWNSTREAM CR43289 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	15469563	2R_15469563_SNP [dm3] 2R_19582058_SNP [dm6]	T	G	3.710e^-4	0.887	INTRON sm
X	13481529	X_13481529_SNP [dm3] X_13587496_SNP [dm6]	T	C	3.711e^-4	0.887	INTRON Tango13
2R	19368149	2R_19368149_SNP [dm3] 2R_23480626_SNP [dm6]	C	T	3.723e^-4	0.887	INTRON CG43795
2R	3080078	2R_3080078_SNP [dm3] 2R_7192573_SNP [dm6]	C	A	3.737e^-4	0.887	INTRON pk	TF binding site BDTNP1_TFBS_prd
3L	12846818	3L_12846818_SNP [dm3] 3L_12853718_SNP [dm6]	T	A	3.743e^-4	0.887	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
3R	14344972	3R_14344972_SNP [dm3] 3R_18519250_SNP [dm6]	A	T	3.744e^-4	0.887	INTRON fru
3R	16810940	3R_16810940_SNP [dm3] 3R_20985218_SNP [dm6]	T	C	3.746e^-4	0.887	UPSTREAM Calx INTRON Calx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20808724	2L_20808724_SNP [dm3] 2L_20808724_SNP [dm6]	C	T	3.780e^-4	0.887	INTRON CG9328	TF binding site mE1_TFBS_chinmo
3R	2617666	3R_2617666_SNP [dm3] 3R_6791944_SNP [dm6]	A	C	3.783e^-4	0.887	UTR_5_PRIME Dfd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10357403	3L_10357403_SNP [dm3] 3L_10364303_SNP [dm6]	T	A	3.787e^-4	0.887	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	3971431	2L_3971431_SNP [dm3] 2L_3971431_SNP [dm6]	A	C	3.795e^-4	0.887	INTRON fred
2L	3971501	2L_3971501_SNP [dm3] 2L_3971501_SNP [dm6]	C	T	3.795e^-4	0.887	INTRON fred
3R	16606964	3R_16606964_SNP [dm3] 3R_20781242_SNP [dm6]	C	T	3.795e^-4	0.887	INTRON Syp
3R	16607217	3R_16607217_SNP [dm3] 3R_20781495_SNP [dm6]	C	A	3.795e^-4	0.887	INTRON Syp
3R	16608132	3R_16608132_SNP [dm3] 3R_20782410_SNP [dm6]	A	G	3.795e^-4	0.887	UPSTREAM Syp INTRON Syp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16608922	3R_16608922_SNP [dm3] 3R_20783200_SNP [dm6]	A	G	3.795e^-4	0.887	UTR_5_PRIME Syp INTRON Syp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	2756548	3R_2756548_SNP [dm3] 3R_6930826_SNP [dm6]	A	G	3.795e^-4	0.887	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18652973	3R_18652973_SNP [dm3] 3R_22827251_SNP [dm6]	C	G	3.796e^-4	0.887	EXON CR44350
3R	22907753	3R_22907753_SNP [dm3] 3R_27082031_SNP [dm6]	T	C	3.800e^-4	0.887	SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23747447	3L_23747447_SNP [dm3] 3L_23754347_SNP [dm6]	G	C	3.809e^-4	0.887	INTERGENIC	transposable element FlyBase
3R	25133843	3R_25133843_SNP [dm3] 3R_29308121_SNP [dm6]	G	A	3.810e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	15480027	2L_15480027_SNP [dm3] 2L_15480027_SNP [dm6]	T	C	3.811e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	20824547	3R_20824547_SNP [dm3] 3R_24998825_SNP [dm6]	C	T	3.815e^-4	0.887	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4217164	2R_4217164_SNP [dm3] 2R_8329659_SNP [dm6]	T	A	3.817e^-4	0.887	INTRON pdm3
3L	2070904	3L_2070904_SNP [dm3] 3L_2070904_SNP [dm6]	A	C	3.820e^-4	0.887	SYNONYMOUS_CODING sls INTRON sls
2L	9905664	2L_9905664_SNP [dm3] 2L_9905664_SNP [dm6]	T	A	3.830e^-4	0.887	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13098116	2R_13098116_SNP [dm3] 2R_17210611_SNP [dm6]	A	G	3.831e^-4	0.887	INTERGENIC
3R	10019359	3R_10019359_SNP [dm3] 3R_14193637_SNP [dm6]	C	G	3.839e^-4	0.887	INTRON Dop1R1
3R	23549538	3R_23549538_SNP [dm3] 3R_27723816_SNP [dm6]	T	A	3.848e^-4	0.887	INTERGENIC
2L	9055427	2L_9055427_SNP [dm3] 2L_9055427_SNP [dm6]	A	G	3.866e^-4	0.887	INTRON CG31708
3R	16494152	3R_16494152_SNP [dm3] 3R_20668430_SNP [dm6]	A	G	3.867e^-4	0.887	INTERGENIC
3R	21657303	3R_21657303_SNP [dm3] 3R_25831581_SNP [dm6]	T	C	3.869e^-4	0.887	UTR_3_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
3L	18424001	3L_18424001_SNP [dm3] 3L_18430901_SNP [dm6]	G	T	3.870e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24050324	3R_24050324_INS [dm3] 3R_28224602_INS [dm6]	C	CATTGGC	3.875e^-4	0.887	INTRON CG34354
X	8385116	X_8385116_SNP [dm3] X_8491083_SNP [dm6]	A	T	3.877e^-4	0.887	UPSTREAM CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12310492	3L_12310492_SNP [dm3] 3L_12317392_SNP [dm6]	T	G	3.878e^-4	0.887	INTERGENIC
3L	12310506	3L_12310506_SNP [dm3] 3L_12317406_SNP [dm6]	T	C	3.878e^-4	0.887	INTERGENIC
3L	14536990	3L_14536990_SNP [dm3] 3L_14543890_SNP [dm6]	C	G	3.879e^-4	0.887	INTRON CG9238
3R	4946642	3R_4946642_SNP [dm3] 3R_9120920_SNP [dm6]	A	C	3.879e^-4	0.887	INTRON pum
2L	1746900	2L_1746900_SNP [dm3] 2L_1746900_SNP [dm6]	T	C	3.880e^-4	0.887	INTRON CG17646
3L	16665907	3L_16665907_SNP [dm3] 3L_16672807_SNP [dm6]	C	T	3.882e^-4	0.887	INTRON zetaCOP
2L	6133834	2L_6133834_SNP [dm3] 2L_6133834_SNP [dm6]	C	T	3.895e^-4	0.887	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	22220256	X_22220256_SNP [dm3] X_22818420_SNP [dm6]	T	C	3.907e^-4	0.887	INTERGENIC
2L	11227106	2L_11227106_SNP [dm3] 2L_11227106_SNP [dm6]	A	T	3.910e^-4	0.887	INTRON ab
2L	9696269	2L_9696269_SNP [dm3] 2L_9696269_SNP [dm6]	T	G	3.912e^-4	0.887	UTR_3_PRIME Pka-C1	TF binding site mE1_TFBS_chinmo
2R	16281333	2R_16281333_SNP [dm3] 2R_20393828_SNP [dm6]	G	A	3.917e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14163313	3R_14163313_SNP [dm3] 3R_18337591_SNP [dm6]	A	T	3.956e^-4	0.887	INTRON CG15803
3R	16511188	3R_16511188_SNP [dm3] 3R_20685466_SNP [dm6]	G	A	3.956e^-4	0.887	INTERGENIC
3R	26132922	3R_26132922_SNP [dm3] 3R_30307200_SNP [dm6]	G	A	3.959e^-4	0.887	UPSTREAM CG34300 INTRON hdc
3R	4922947	3R_4922947_SNP [dm3] 3R_9097225_SNP [dm6]	C	A	3.964e^-4	0.887	INTRON pum
3R	15504205	3R_15504205_SNP [dm3] 3R_19678483_SNP [dm6]	T	C	3.970e^-4	0.887	INTRON Naam
2L	8567656	2L_8567656_SNP [dm3] 2L_8567656_SNP [dm6]	A	C	3.977e^-4	0.887	INTRON Sema-1a
2R	13625272	2R_13625272_INS [dm3] 2R_17737767_INS [dm6]	T	TT	3.987e^-4	0.887	UTR_3_PRIME CG6401 UPSTREAM CG6406 DOWNSTREAM CG6401
2L	8567721	2L_8567721_SNP [dm3] 2L_8567721_SNP [dm6]	A	G	3.987e^-4	0.887	INTRON Sema-1a
2L	3924005	2L_3924005_SNP [dm3] 2L_3924005_SNP [dm6]	G	C	3.993e^-4	0.887	INTRON fred
3L	15567586	3L_15567586_SNP [dm3] 3L_15574486_SNP [dm6]	C	A	4.002e^-4	0.887	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	15567607	3L_15567607_SNP [dm3] 3L_15574507_SNP [dm6]	T	C	4.002e^-4	0.887	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
4	914494	4_914494_SNP [dm3] 4_893868_SNP [dm6]	G	A	4.011e^-4	0.887	UPSTREAM unc-13 INTRON unc-13
3R	26142527	3R_26142527_SNP [dm3] 3R_30316805_SNP [dm6]	T	C	4.013e^-4	0.887	INTRON hdc
3L	12560448	3L_12560448_SNP [dm3] 3L_12567348_SNP [dm6]	A	G	4.023e^-4	0.887	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23520343	3R_23520343_SNP [dm3] 3R_27694621_SNP [dm6]	A	G	4.027e^-4	0.887	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
3R	25324895	3R_25324895_SNP [dm3] 3R_29499173_SNP [dm6]	C	G	4.033e^-4	0.887	UTR_3_PRIME Trc8 DOWNSTREAM CG2010
2R	18437782	2R_18437782_SNP [dm3] 2R_22550277_SNP [dm6]	A	C	4.033e^-4	0.887	INTRON px & 1 other	TF binding site mE1_TFBS_cad
3R	26768282	3R_26768282_SNP [dm3] 3R_30942560_SNP [dm6]	A	G	4.041e^-4	0.887	INTERGENIC
3R	19501362	3R_19501362_SNP [dm3] 3R_23675640_SNP [dm6]	A	T	4.055e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	13098045	2R_13098045_SNP [dm3] 2R_17210540_SNP [dm6]	G	T	4.055e^-4	0.887	INTERGENIC
2R	6609552	2R_6609552_SNP [dm3] 2R_10722047_SNP [dm6]	T	C	4.067e^-4	0.887	UTR_3_PRIME Rab3 DOWNSTREAM stan
3R	10019322	3R_10019322_SNP [dm3] 3R_14193600_SNP [dm6]	C	A	4.068e^-4	0.887	INTRON Dop1R1
X	18511822	X_18511822_INS [dm3] X_18617789_INS [dm6]	A	AT	4.075e^-4	0.887	UPSTREAM CG15040 INTERGENIC
3R	23313264	3R_23313264_SNP [dm3] 3R_27487542_SNP [dm6]	G	A	4.081e^-4	0.887	UPSTREAM Gr98a INTERGENIC
3L	423812	3L_423812_SNP [dm3] 3L_423812_SNP [dm6]	G	A	4.087e^-4	0.887	INTERGENIC
X	21892815	X_21892815_SNP [dm3] X_22490979_SNP [dm6]	C	T	4.091e^-4	0.887	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
X	9604871	X_9604871_SNP [dm3] X_9710838_SNP [dm6]	C	T	4.101e^-4	0.887	INTERGENIC
X	22071266	X_22071266_SNP [dm3] X_22669430_SNP [dm6]	G	A	4.108e^-4	0.887	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14119002	2R_14119002_SNP [dm3] 2R_18231497_SNP [dm6]	C	T	4.108e^-4	0.887	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11470007	2L_11470007_SNP [dm3] 2L_11470007_SNP [dm6]	A	G	4.111e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11470059	2L_11470059_SNP [dm3] 2L_11470059_SNP [dm6]	G	A	4.111e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14123342	2R_14123342_SNP [dm3] 2R_18235837_SNP [dm6]	G	A	4.117e^-4	0.887	SYNONYMOUS_CODING fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16336392	2L_16336392_SNP [dm3] 2L_16336392_SNP [dm6]	A	G	4.127e^-4	0.887	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2R	10965076	2R_10965076_SNP [dm3] 2R_15077571_SNP [dm6]	G	C	4.127e^-4	0.887	INTERGENIC
2L	10904666	2L_10904666_SNP [dm3] 2L_10904666_SNP [dm6]	T	A	4.135e^-4	0.887	UPSTREAM CR45724 INTERGENIC
3R	9678305	3R_9678305_SNP [dm3] 3R_13852583_SNP [dm6]	G	C	4.138e^-4	0.887	INTERGENIC
2R	14091842	2R_14091842_SNP [dm3] 2R_18204337_SNP [dm6]	A	G	4.140e^-4	0.887	INTERGENIC
3L	12415800	3L_12415800_SNP [dm3] 3L_12422700_SNP [dm6]	C	G	4.148e^-4	0.887	NON_SYNONYMOUS_CODING toe UTR_3_PRIME toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7776112	2R_7776112_SNP [dm3] 2R_11888607_SNP [dm6]	C	T	4.164e^-4	0.887	SYNONYMOUS_CODING ERp60
2R	7776531	2R_7776531_SNP [dm3] 2R_11889026_SNP [dm6]	C	T	4.164e^-4	0.887	SYNONYMOUS_CODING ERp60
3L	14536922	3L_14536922_SNP [dm3] 3L_14543822_SNP [dm6]	C	A	4.165e^-4	0.887	INTRON CG9238
3R	23521141	3R_23521141_SNP [dm3] 3R_27695419_SNP [dm6]	C	T	4.166e^-4	0.887	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 1 other	TF binding site mE1_TFBS_sens
2L	3633904	2L_3633904_SNP [dm3] 2L_3633904_SNP [dm6]	T	A	4.186e^-4	0.887	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10636787	3R_10636787_SNP [dm3] 3R_14811065_SNP [dm6]	C	G	4.191e^-4	0.887	INTRON btsz
3R	10636808	3R_10636808_SNP [dm3] 3R_14811086_SNP [dm6]	C	T	4.191e^-4	0.887	INTRON btsz
3R	10636859	3R_10636859_SNP [dm3] 3R_14811137_SNP [dm6]	C	A	4.191e^-4	0.887	INTRON btsz
3R	10636921	3R_10636921_SNP [dm3] 3R_14811199_SNP [dm6]	C	T	4.191e^-4	0.887	INTRON btsz
3R	13355445	3R_13355445_SNP [dm3] 3R_17529723_SNP [dm6]	G	T	4.192e^-4	0.887	INTERGENIC
3R	13355669	3R_13355669_SNP [dm3] 3R_17529947_SNP [dm6]	T	A	4.192e^-4	0.887	INTERGENIC
3R	13362753	3R_13362753_SNP [dm3] 3R_17537031_SNP [dm6]	C	T	4.192e^-4	0.887	UTR_3_PRIME P5cr-2 & 1 other DOWNSTREAM P5cr-2
2L	12209696	2L_12209696_SNP [dm3] 2L_12209696_SNP [dm6]	C	G	4.198e^-4	0.887	NON_SYNONYMOUS_CODING CG31759 INTRON aret
3R	17003475	3R_17003475_SNP [dm3] 3R_21177753_SNP [dm6]	A	G	4.203e^-4	0.887	INTRON SNF4Agamma
2L	4715815	2L_4715815_SNP [dm3] 2L_4715815_SNP [dm6]	A	G	4.205e^-4	0.887	INTRON CG34351
X	17239295	X_17239295_INS [dm3] X_17345262_INS [dm6]	T	TTAAAGATTTTAATTATCCC...	4.212e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11643894	3L_11643894_SNP [dm3] 3L_11650794_SNP [dm6]	G	T	4.229e^-4	0.887	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
3R	16307179	3R_16307179_SNP [dm3] 3R_20481457_SNP [dm6]	G	A	4.245e^-4	0.887	UTR_5_PRIME Gfrl INTRON Gfrl
2L	8800913	2L_8800913_SNP [dm3] 2L_8800913_SNP [dm6]	T	C	4.251e^-4	0.887	INTERGENIC
2L	10837650	2L_10837650_SNP [dm3] 2L_10837650_SNP [dm6]	T	G	4.257e^-4	0.887	UPSTREAM Nos DOWNSTREAM CG6700 INTERGENIC
3R	8613770	3R_8613770_SNP [dm3] 3R_12788048_SNP [dm6]	C	T	4.259e^-4	0.887	INTERGENIC
3L	945590	3L_945590_SNP [dm3] 3L_945590_SNP [dm6]	G	A	4.264e^-4	0.887	INTRON Glut1
3L	945594	3L_945594_SNP [dm3] 3L_945594_SNP [dm6]	G	C	4.264e^-4	0.887	INTRON Glut1
X	18656253	X_18656253_SNP [dm3] X_18762220_SNP [dm6]	C	T	4.267e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9548112	3R_9548112_DEL [dm3] 3R_13722390_DEL [dm6]	GA	C	4.277e^-4	0.887	INTRON CG34383
3L	2333390	3L_2333390_SNP [dm3] 3L_2333390_SNP [dm6]	G	A	4.280e^-4	0.887	INTRON MsR1
3R	23519992	3R_23519992_SNP [dm3] 3R_27694270_SNP [dm6]	A	G	4.294e^-4	0.887	UPSTREAM CG43319 & 2 others INTERGENIC
3R	23520013	3R_23520013_SNP [dm3] 3R_27694291_SNP [dm6]	C	T	4.294e^-4	0.887	UPSTREAM CG43319 & 2 others INTERGENIC
2L	8567695	2L_8567695_SNP [dm3] 2L_8567695_SNP [dm6]	A	G	4.296e^-4	0.887	INTRON Sema-1a
X	8889145	X_8889145_SNP [dm3] X_8995112_SNP [dm6]	T	C	4.299e^-4	0.887	INTRON rdgA & 1 other
3R	22908640	3R_22908640_SNP [dm3] 3R_27082918_SNP [dm6]	C	G	4.317e^-4	0.887	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
2R	7777427	2R_7777427_SNP [dm3] 2R_11889922_SNP [dm6]	G	A	4.338e^-4	0.887	INTRON ERp60	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14059164	3R_14059164_SNP [dm3] 3R_18233442_SNP [dm6]	C	T	4.353e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
X	749095	X_749095_SNP [dm3] X_855062_SNP [dm6]	G	A	4.354e^-4	0.887	INTRON CG43867
X	11520803	X_11520803_SNP [dm3] X_11626770_SNP [dm6]	G	A	4.376e^-4	0.887	INTRON Ptp10D
3L	1461648	3L_1461648_SNP [dm3] 3L_1461648_SNP [dm6]	T	C	4.377e^-4	0.887	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10901777	3R_10901777_SNP [dm3] 3R_15076055_SNP [dm6]	A	C	4.394e^-4	0.887	INTRON dpr9
2L	17535104	2L_17535104_SNP [dm3] 2L_17535104_SNP [dm6]	T	C	4.396e^-4	0.887	INTERGENIC
3R	9370006	3R_9370006_SNP [dm3] 3R_13544284_SNP [dm6]	T	A	4.411e^-4	0.887	UTR_3_PRIME CG31337
2L	10873638	2L_10873638_SNP [dm3] 2L_10873638_SNP [dm6]	G	A	4.413e^-4	0.887	INTERGENIC
3R	14829413	3R_14829413_SNP [dm3] 3R_19003691_SNP [dm6]	C	T	4.423e^-4	0.887	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6507119	3R_6507119_SNP [dm3] 3R_10681397_SNP [dm6]	T	A	4.434e^-4	0.887	UPSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14125027	3R_14125027_SNP [dm3] 3R_18299305_SNP [dm6]	A	G	4.437e^-4	0.887	UTR_5_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10548867	3R_10548867_DEL [dm3] 3R_14723145_DEL [dm6]	ACC	TA	4.476e^-4	0.887	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	9532678	3R_9532678_SNP [dm3] 3R_13706956_SNP [dm6]	T	C	4.485e^-4	0.887	NON_SYNONYMOUS_CODING Adgf-C
2R	19025978	2R_19025978_SNP [dm3] 2R_23138455_SNP [dm6]	T	C	4.485e^-4	0.887	UPSTREAM CG30192 DOWNSTREAM CG13544 INTERGENIC
2R	16579976	2R_16579976_SNP [dm3] 2R_20692471_SNP [dm6]	C	T	4.487e^-4	0.887	UPSTREAM CG13438 EXON CR44659
2L	9696254	2L_9696254_SNP [dm3] 2L_9696254_SNP [dm6]	T	G	4.499e^-4	0.887	UTR_3_PRIME Pka-C1	TF binding site mE1_TFBS_chinmo
2R	8608478	2R_8608478_SNP [dm3] 2R_12720973_SNP [dm6]	G	A	4.513e^-4	0.887	INTRON CG42663
X	11204987	X_11204987_SNP [dm3] X_11310954_SNP [dm6]	C	T	4.518e^-4	0.887	SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11625195	3L_11625195_SNP [dm3] 3L_11632095_SNP [dm6]	C	A	4.522e^-4	0.887	DOWNSTREAM CR45158 INTRON CG32091
2R	13097894	2R_13097894_SNP [dm3] 2R_17210389_SNP [dm6]	A	C	4.535e^-4	0.887	INTERGENIC
3L	16016249	3L_16016249_SNP [dm3] 3L_16023149_SNP [dm6]	A	T	4.544e^-4	0.887	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17535142	2L_17535142_SNP [dm3] 2L_17535142_SNP [dm6]	G	C	4.544e^-4	0.887	INTERGENIC
3L	1385628	3L_1385628_SNP [dm3] 3L_1385628_SNP [dm6]	A	T	4.546e^-4	0.887	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	2623584	3R_2623584_SNP [dm3] 3R_6797862_SNP [dm6]	A	C	4.551e^-4	0.887	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
2L	11555761	2L_11555761_SNP [dm3] 2L_11555761_SNP [dm6]	C	A	4.553e^-4	0.887	INTERGENIC
2R	8825935	2R_8825935_SNP [dm3] 2R_12938430_SNP [dm6]	A	C	4.577e^-4	0.887	UTR_5_PRIME Sans UPSTREAM CG30487
X	13690289	X_13690289_DEL [dm3] X_13796256_DEL [dm6]	AA	A	4.584e^-4	0.887	DOWNSTREAM CG10996 INTRON inaE
X	13690295	X_13690295_DEL [dm3] X_13796262_DEL [dm6]	ATTTTAATA	A	4.584e^-4	0.887	DOWNSTREAM CG10996 INTRON inaE
3R	6507103	3R_6507103_SNP [dm3] 3R_10681381_SNP [dm6]	G	A	4.589e^-4	0.887	UPSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25412218	3R_25412218_SNP [dm3] 3R_29586496_SNP [dm6]	G	A	4.594e^-4	0.887	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	5529200	X_5529200_SNP [dm3] X_5635167_SNP [dm6]	G	C	4.595e^-4	0.887	INTRON CG42492
X	22219545	X_22219545_SNP [dm3] X_22817709_SNP [dm6]	T	A	4.596e^-4	0.887	INTERGENIC
3R	6979028	3R_6979028_SNP [dm3] 3R_11153306_SNP [dm6]	G	A	4.596e^-4	0.887	SYNONYMOUS_CODING Ugt86Di
3L	5233771	3L_5233771_SNP [dm3] 3L_5240671_SNP [dm6]	T	A	4.613e^-4	0.887	INTRON shep
3R	18906424	3R_18906424_SNP [dm3] 3R_23080702_SNP [dm6]	A	T	4.623e^-4	0.887	INTRON CG13830
X	18817794	X_18817794_SNP [dm3] X_18923761_SNP [dm6]	A	T	4.628e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3982904	2L_3982904_SNP [dm3] 2L_3982904_SNP [dm6]	C	G	4.633e^-4	0.887	INTRON fred
2L	3982905	2L_3982905_SNP [dm3] 2L_3982905_SNP [dm6]	G	C	4.633e^-4	0.887	INTRON fred
3R	6246394	3R_6246394_SNP [dm3] 3R_10420672_SNP [dm6]	T	C	4.648e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6246399	3R_6246399_DEL [dm3] 3R_10420677_DEL [dm6]	GCACTGAAACCAAGCAAAAG...	G	4.648e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14923402	2R_14923402_SNP [dm3] 2R_19035897_SNP [dm6]	A	G	4.679e^-4	0.887	SYNONYMOUS_CODING CG15115
X	12017590	X_12017590_SNP [dm3] X_12123557_SNP [dm6]	T	A	4.696e^-4	0.887	INTRON Ten-a
X	12017592	X_12017592_SNP [dm3] X_12123559_SNP [dm6]	A	T	4.696e^-4	0.887	INTRON Ten-a
3R	21675720	3R_21675720_SNP [dm3] 3R_25849998_SNP [dm6]	A	T	4.707e^-4	0.887	DOWNSTREAM CG14545 INTERGENIC
3R	21675740	3R_21675740_SNP [dm3] 3R_25850018_SNP [dm6]	A	G	4.707e^-4	0.887	DOWNSTREAM CG14545 INTERGENIC
2L	5510215	2L_5510215_SNP [dm3] 2L_5510215_SNP [dm6]	A	T	4.709e^-4	0.887	INTERGENIC
3L	5436543	3L_5436543_SNP [dm3] 3L_5443443_SNP [dm6]	A	G	4.711e^-4	0.887	INTERGENIC
3L	18423929	3L_18423929_SNP [dm3] 3L_18430829_SNP [dm6]	T	A	4.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18423935	3L_18423935_SNP [dm3] 3L_18430835_SNP [dm6]	A	T	4.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18423938	3L_18423938_SNP [dm3] 3L_18430838_SNP [dm6]	T	C	4.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18423940	3L_18423940_SNP [dm3] 3L_18430840_SNP [dm6]	G	A	4.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18423946	3L_18423946_SNP [dm3] 3L_18430846_SNP [dm6]	A	C	4.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	704412	3L_704412_SNP [dm3] 3L_704412_SNP [dm6]	T	A	4.720e^-4	0.887	UPSTREAM CR44514 INTERGENIC
3L	704484	3L_704484_SNP [dm3] 3L_704484_SNP [dm6]	A	G	4.720e^-4	0.887	UPSTREAM CR44514 INTERGENIC
3R	6505493	3R_6505493_SNP [dm3] 3R_10679771_SNP [dm6]	G	A	4.722e^-4	0.887	INTRON CG14688	TF binding site BDTNP1_TFBS_twi
3R	2617585	3R_2617585_SNP [dm3] 3R_6791863_SNP [dm6]	G	A	4.727e^-4	0.887	UTR_5_PRIME Dfd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8720936	3L_8720936_SNP [dm3] 3L_8727836_SNP [dm6]	C	A	4.735e^-4	0.887	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	23522397	3R_23522397_SNP [dm3] 3R_27696675_SNP [dm6]	C	T	4.739e^-4	0.887	UTR_3_PRIME ALiX DOWNSTREAM CG43320
2L	520769	2L_520769_SNP [dm3] 2L_520769_SNP [dm6]	A	T	4.744e^-4	0.887	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	7633106	2R_7633106_SNP [dm3] 2R_11745601_SNP [dm6]	A	G	4.753e^-4	0.887	INTERGENIC
2R	7708205	2R_7708205_SNP [dm3] 2R_11820700_SNP [dm6]	A	C	4.753e^-4	0.887	INTERGENIC
3R	17010146	3R_17010146_SNP [dm3] 3R_21184424_SNP [dm6]	G	A	4.757e^-4	0.887	INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3L	1969719	3L_1969719_SNP [dm3] 3L_1969719_SNP [dm6]	C	T	4.763e^-4	0.887	UTR_5_PRIME CG1927 DOWNSTREAM CG11815
3R	6975008	3R_6975008_SNP [dm3] 3R_11149286_SNP [dm6]	A	T	4.772e^-4	0.887	INTERGENIC
2R	19446626	2R_19446626_SNP [dm3] 2R_23559103_SNP [dm6]	A	C	4.778e^-4	0.887	NON_SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19670824	3R_19670824_SNP [dm3] 3R_23845102_SNP [dm6]	T	A	4.778e^-4	0.887	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	19670831	3R_19670831_SNP [dm3] 3R_23845109_SNP [dm6]	T	A	4.778e^-4	0.887	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	8793368	X_8793368_SNP [dm3] X_8899335_SNP [dm6]	C	T	4.778e^-4	0.887	SYNONYMOUS_CODING CG1885	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11482989	2L_11482989_INS [dm3] 2L_11482989_INS [dm6]	T	TACAGCACAACACT...	4.788e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2680814	3R_2680814_SNP [dm3] 3R_6855092_SNP [dm6]	G	A	4.799e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	2906049	X_2906049_MNP [dm3] X_3012016_MNP [dm6]	TTTA	CAAT	4.800e^-4	0.887	INTRON kirre
2L	20808730	2L_20808730_SNP [dm3] 2L_20808730_SNP [dm6]	C	A	4.801e^-4	0.887	INTRON CG9328	TF binding site mE1_TFBS_chinmo
2R	1920862	2R_1920862_SNP [dm3] 2R_6033357_SNP [dm6]	C	G	4.824e^-4	0.887	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
2R	16579905	2R_16579905_SNP [dm3] 2R_20692400_SNP [dm6]	C	T	4.833e^-4	0.887	UPSTREAM CG13438 EXON CR44659
3L	10902041	3L_10902041_SNP [dm3] 3L_10908941_SNP [dm6]	T	A	4.836e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23746638	3L_23746638_SNP [dm3] 3L_23753538_SNP [dm6]	C	T	4.838e^-4	0.887	INTERGENIC
3R	3623196	3R_3623196_SNP [dm3] 3R_7797474_SNP [dm6]	G	A	4.842e^-4	0.887	SYNONYMOUS_CODING CG18744 DOWNSTREAM CG2641
2L	9046897	2L_9046897_SNP [dm3] 2L_9046897_SNP [dm6]	C	A	4.848e^-4	0.887	INTERGENIC
X	16953345	X_16953345_SNP [dm3] X_17059312_SNP [dm6]	C	T	4.851e^-4	0.887	INTRON CG45002
3R	23478391	3R_23478391_SNP [dm3] 3R_27652669_SNP [dm6]	T	A	4.855e^-4	0.887	UPSTREAM RpS10a INTRON tau
3R	18819106	3R_18819106_SNP [dm3] 3R_22993384_SNP [dm6]	G	A	4.859e^-4	0.887	INTRON Nha2
X	7455758	X_7455758_SNP [dm3] X_7561725_SNP [dm6]	C	A	4.862e^-4	0.887	INTERGENIC
3R	6960083	3R_6960083_SNP [dm3] 3R_11134361_SNP [dm6]	G	A	4.877e^-4	0.887	INTERGENIC
3R	6960095	3R_6960095_SNP [dm3] 3R_11134373_SNP [dm6]	G	A	4.877e^-4	0.887	INTERGENIC
3L	16664161	3L_16664161_SNP [dm3] 3L_16671061_SNP [dm6]	A	G	4.903e^-4	0.887	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
2R	9675700	2R_9675700_SNP [dm3] 2R_13788195_SNP [dm6]	C	G	4.908e^-4	0.887	DOWNSTREAM Cpr50Ca INTERGENIC
X	16801442	X_16801442_SNP [dm3] X_16907409_SNP [dm6]	A	T	4.909e^-4	0.887	INTRON CR44754
2L	10814374	2L_10814374_SNP [dm3] 2L_10814374_SNP [dm6]	C	T	4.917e^-4	0.887	INTRON Nos
3R	22109414	3R_22109414_SNP [dm3] 3R_26283692_SNP [dm6]	C	T	4.924e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5344089	X_5344089_SNP [dm3] X_5450056_SNP [dm6]	A	G	4.947e^-4	0.887	INTRON SPR
3R	16242444	3R_16242444_SNP [dm3] 3R_20416722_SNP [dm6]	A	C	4.959e^-4	0.887	INTRON Gfrl
2L	11464016	2L_11464016_SNP [dm3] 2L_11464016_SNP [dm6]	C	T	4.972e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9464897	2R_9464897_SNP [dm3] 2R_13577392_SNP [dm6]	C	T	4.978e^-4	0.887	UPSTREAM CR44366 EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll
2R	10706383	2R_10706383_SNP [dm3] 2R_14818878_SNP [dm6]	C	T	4.986e^-4	0.887	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24092048	3R_24092048_SNP [dm3] 3R_28266326_SNP [dm6]	A	G	4.995e^-4	0.887	INTERGENIC
3R	17684923	3R_17684923_SNP [dm3] 3R_21859201_SNP [dm6]	T	C	4.998e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19598293	3R_19598293_SNP [dm3] 3R_23772571_SNP [dm6]	A	C	4.998e^-4	0.887	SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl
3L	12725154	3L_12725154_DEL [dm3] 3L_12732054_DEL [dm6]	AATT	A	5.003e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21269403	3R_21269403_SNP [dm3] 3R_25443681_SNP [dm6]	A	G	5.004e^-4	0.887	INTRON Fur1
3R	24050091	3R_24050091_SNP [dm3] 3R_28224369_SNP [dm6]	C	G	5.004e^-4	0.887	INTRON CG34354
3R	3624692	3R_3624692_SNP [dm3] 3R_7798970_SNP [dm6]	A	G	5.014e^-4	0.887	UPSTREAM CG18744 DOWNSTREAM CG3014 INTERGENIC
3R	18614670	3R_18614670_SNP [dm3] 3R_22788948_SNP [dm6]	G	A	5.020e^-4	0.887	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19222564	3R_19222564_DEL [dm3] 3R_23396842_DEL [dm6]	CGCAAATTTTCAC...	C	5.035e^-4	0.887	INTERGENIC
3R	22920921	3R_22920921_SNP [dm3] 3R_27095199_SNP [dm6]	T	C	5.042e^-4	0.887	DOWNSTREAM CG14258 & 1 other INTRON CG14259
2L	4786789	2L_4786789_SNP [dm3] 2L_4786789_SNP [dm6]	A	G	5.059e^-4	0.887	INTRON CG15630
2R	15426441	2R_15426441_SNP [dm3] 2R_19538936_SNP [dm6]	A	T	5.107e^-4	0.887	INTRON sm
2R	15426457	2R_15426457_SNP [dm3] 2R_19538952_SNP [dm6]	C	T	5.107e^-4	0.887	INTRON sm
2L	1582833	2L_1582833_SNP [dm3] 2L_1582833_SNP [dm6]	A	C	5.107e^-4	0.887	INTRON haf
3L	16899764	3L_16899764_SNP [dm3] 3L_16906664_SNP [dm6]	A	G	5.116e^-4	0.887	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_sens
2R	7777306	2R_7777306_SNP [dm3] 2R_11889801_SNP [dm6]	C	T	5.118e^-4	0.887	INTRON ERp60	TF binding site mE1_TFBS_hkb mE1_TFBS_Trl
3L	19668746	3L_19668746_SNP [dm3] 3L_19675646_SNP [dm6]	T	C	5.133e^-4	0.887	INTERGENIC
2L	17646779	2L_17646779_SNP [dm3] 2L_17646779_SNP [dm6]	C	A	5.139e^-4	0.887	DOWNSTREAM CadN INTERGENIC
2R	19498178	2R_19498178_SNP [dm3] 2R_23610655_SNP [dm6]	C	A	5.146e^-4	0.887	INTRON CG17664 & 1 other
3R	2623164	3R_2623164_SNP [dm3] 3R_6797442_SNP [dm6]	T	G	5.150e^-4	0.887	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
3R	11382934	3R_11382934_SNP [dm3] 3R_15557212_SNP [dm6]	A	G	5.153e^-4	0.887	INTERGENIC
3R	2576927	3R_2576927_SNP [dm3] 3R_6751205_SNP [dm6]	C	T	5.164e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11256257	3L_11256257_SNP [dm3] 3L_11263157_SNP [dm6]	C	T	5.167e^-4	0.887	INTERGENIC
2R	13625463	2R_13625463_SNP [dm3] 2R_17737958_SNP [dm6]	T	C	5.172e^-4	0.887	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
2R	13625474	2R_13625474_SNP [dm3] 2R_17737969_SNP [dm6]	A	G	5.172e^-4	0.887	SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
2L	22581857	2L_22581857_SNP [dm3] 2L_22689125_SNP [dm6]	T	C	5.174e^-4	0.887	INTRON CG40006
2R	16897053	2R_16897053_SNP [dm3] 2R_21009548_SNP [dm6]	T	C	5.174e^-4	0.887	UTR_5_PRIME CG30291 DOWNSTREAM grau	TF binding site BDTNP1_TFBS_dl
2L	10185720	2L_10185720_SNP [dm3] 2L_10185720_SNP [dm6]	G	A	5.175e^-4	0.887	SYNONYMOUS_CODING Sur
2L	8793707	2L_8793707_SNP [dm3] 2L_8793707_SNP [dm6]	G	A	5.184e^-4	0.887	INTERGENIC
X	6003181	X_6003181_SNP [dm3] X_6109148_SNP [dm6]	A	G	5.186e^-4	0.887	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	6526609	3R_6526609_SNP [dm3] 3R_10700887_SNP [dm6]	A	G	5.190e^-4	0.887	INTRON pug	TF binding site mE1_TFBS_chinmo
3R	8613616	3R_8613616_SNP [dm3] 3R_12787894_SNP [dm6]	A	G	5.190e^-4	0.887	INTERGENIC
2L	9904799	2L_9904799_DEL [dm3] 2L_9904799_DEL [dm6]	TT	T	5.206e^-4	0.887	INTRON CG13124
3L	8802675	3L_8802675_DEL [dm3] 3L_8809575_DEL [dm6]	TCTGCAATT	T	5.213e^-4	0.887	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3L	15723194	3L_15723194_DEL [dm3] 3L_15730094_DEL [dm6]	TAAATGCTTTTGTACAATTT...	T	5.219e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18456149	3R_18456149_SNP [dm3] 3R_22630427_SNP [dm6]	C	T	5.224e^-4	0.887	NON_SYNONYMOUS_CODING loco INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	705496	3L_705496_SNP [dm3] 3L_705496_SNP [dm6]	C	G	5.225e^-4	0.887	DOWNSTREAM CG13895 EXON CR44514
3R	2343783	3R_2343783_DEL [dm3] 3R_6518061_DEL [dm6]	TCTTT	T	5.241e^-4	0.887	INTERGENIC
3R	25350392	3R_25350392_SNP [dm3] 3R_29524670_SNP [dm6]	T	A	5.246e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5759558	2L_5759558_SNP [dm3] 2L_5759558_SNP [dm6]	G	A	5.259e^-4	0.887	SYNONYMOUS_CODING CG11030	TF binding site mE1_TFBS_cad
2R	8273821	2R_8273821_SNP [dm3] 2R_12386316_SNP [dm6]	A	G	5.259e^-4	0.887	UPSTREAM Cpr49Ac INTERGENIC
3R	13369399	3R_13369399_SNP [dm3] 3R_17543677_SNP [dm6]	T	A	5.260e^-4	0.887	DOWNSTREAM SF1 INTRON SF1
3L	16665799	3L_16665799_SNP [dm3] 3L_16672699_SNP [dm6]	T	C	5.270e^-4	0.887	INTRON zetaCOP
3R	16608107	3R_16608107_SNP [dm3] 3R_20782385_SNP [dm6]	T	A	5.270e^-4	0.887	UPSTREAM Syp INTRON Syp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21675717	3R_21675717_SNP [dm3] 3R_25849995_SNP [dm6]	A	G	5.273e^-4	0.887	DOWNSTREAM CG14545 INTERGENIC
2R	6770726	2R_6770726_SNP [dm3] 2R_10883221_SNP [dm6]	A	C	5.282e^-4	0.887	UPSTREAM CG18003 DOWNSTREAM Pex6 INTERGENIC
2R	6770798	2R_6770798_SNP [dm3] 2R_10883293_SNP [dm6]	A	G	5.282e^-4	0.887	UPSTREAM CG18003 DOWNSTREAM Pex6 INTERGENIC
2R	8676187	2R_8676187_SNP [dm3] 2R_12788682_SNP [dm6]	T	A	5.286e^-4	0.887	INTRON sca EXON CR45137
3R	22073296	3R_22073296_SNP [dm3] 3R_26247574_SNP [dm6]	G	A	5.289e^-4	0.887	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	19466487	3R_19466487_SNP [dm3] 3R_23640765_SNP [dm6]	G	A	5.295e^-4	0.887	INTRON CG31145
X	13665851	X_13665851_SNP [dm3] X_13771818_SNP [dm6]	C	T	5.299e^-4	0.887	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7628223	3L_7628223_SNP [dm3] 3L_7635123_SNP [dm6]	G	C	5.310e^-4	0.887	INTRON CG33275	TF binding site mE1_TFBS_HSA
3L	13609519	3L_13609519_INS [dm3] 3L_13616419_INS [dm6]	A	AGA	5.319e^-4	0.887	INTRON bru-3
2L	8183053	2L_8183053_SNP [dm3] 2L_8183053_SNP [dm6]	T	A	5.346e^-4	0.887	INTRON Piezo
3L	23136502	3L_23136502_SNP [dm3] 3L_23143402_SNP [dm6]	G	A	5.356e^-4	0.887	INTERGENIC
3R	9532685	3R_9532685_SNP [dm3] 3R_13706963_SNP [dm6]	C	T	5.358e^-4	0.887	SYNONYMOUS_CODING Adgf-C
3R	26167501	3R_26167501_SNP [dm3] 3R_30341779_SNP [dm6]	G	C	5.362e^-4	0.887	INTRON hdc
3L	11224914	3L_11224914_SNP [dm3] 3L_11231814_SNP [dm6]	C	T	5.376e^-4	0.887	UPSTREAM CR45405 INTERGENIC
2L	4717706	2L_4717706_SNP [dm3] 2L_4717706_SNP [dm6]	C	T	5.386e^-4	0.887	INTRON CG34351
4	836392	4_836392_SNP [dm3] 4_815766_SNP [dm6]	C	G	5.388e^-4	0.887	INTRON Sox102F	transposable element FlyBase
4	838085	4_838085_SNP [dm3] 4_817459_SNP [dm6]	A	G	5.388e^-4	0.887	INTRON Sox102F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13371320	3R_13371320_SNP [dm3] 3R_17545598_SNP [dm6]	A	G	5.395e^-4	0.887	SYNONYMOUS_CODING Prx3 DOWNSTREAM SF1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24744001	3R_24744001_SNP [dm3] 3R_28918279_SNP [dm6]	T	A	5.402e^-4	0.887	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9755245	3L_9755245_SNP [dm3] 3L_9762145_SNP [dm6]	T	C	5.403e^-4	0.887	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
X	7958951	X_7958951_DEL [dm3] X_8064918_DEL [dm6]	ATTTGACTTG	A	5.419e^-4	0.887	INTRON mys	TF binding site mE1_TFBS_HSA
3L	4083670	3L_4083670_SNP [dm3] 3L_4083670_SNP [dm6]	T	C	5.423e^-4	0.887	INTRON Gad1
2R	4425798	2R_4425798_SNP [dm3] 2R_8538293_SNP [dm6]	G	A	5.430e^-4	0.887	INTERGENIC
2L	3635048	2L_3635048_SNP [dm3] 2L_3635048_SNP [dm6]	C	G	5.439e^-4	0.887	INTRON for
3R	10368541	3R_10368541_SNP [dm3] 3R_14542819_SNP [dm6]	G	C	5.447e^-4	0.887	INTRON Pde6
3R	26334783	3R_26334783_SNP [dm3] 3R_30509061_SNP [dm6]	A	G	5.461e^-4	0.887	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10085062	3L_10085062_SNP [dm3] 3L_10091962_SNP [dm6]	T	C	5.464e^-4	0.887	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3829932	3L_3829932_SNP [dm3] 3L_3829932_SNP [dm6]	G	A	5.464e^-4	0.887	INTRON enc
3L	3829941	3L_3829941_SNP [dm3] 3L_3829941_SNP [dm6]	A	T	5.464e^-4	0.887	INTRON enc
3R	19670802	3R_19670802_SNP [dm3] 3R_23845080_SNP [dm6]	T	C	5.464e^-4	0.887	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	19670812	3R_19670812_INS [dm3] 3R_23845090_INS [dm6]	C	CT	5.464e^-4	0.887	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	23639881	3R_23639881_SNP [dm3] 3R_27814159_SNP [dm6]	A	T	5.465e^-4	0.887	INTRON CG34353
3R	22854340	3R_22854340_SNP [dm3] 3R_27028618_SNP [dm6]	C	A	5.480e^-4	0.887	SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad
4	549268	4_549268_SNP [dm3] 4_528642_SNP [dm6]	A	G	5.488e^-4	0.887	INTRON zfh2
3R	23871855	3R_23871855_SNP [dm3] 3R_28046133_SNP [dm6]	A	G	5.490e^-4	0.887	INTRON CG34362
2R	9796080	2R_9796080_SNP [dm3] 2R_13908575_SNP [dm6]	G	A	5.493e^-4	0.887	INTRON shot
3R	21751952	3R_21751952_SNP [dm3] 3R_25926230_SNP [dm6]	A	G	5.495e^-4	0.887	INTRON CCAP-R
3L	12169903	3L_12169903_INS [dm3] 3L_12176803_INS [dm6]	T	TT	5.517e^-4	0.887	UPSTREAM CAH2 INTERGENIC
3L	12169922	3L_12169922_SNP [dm3] 3L_12176822_SNP [dm6]	T	C	5.517e^-4	0.887	UPSTREAM CAH2 INTERGENIC
3L	12169923	3L_12169923_SNP [dm3] 3L_12176823_SNP [dm6]	G	T	5.517e^-4	0.887	UPSTREAM CAH2 INTERGENIC
3L	5459784	3L_5459784_SNP [dm3] 3L_5466684_SNP [dm6]	G	A	5.518e^-4	0.887	INTERGENIC
2L	3971574	2L_3971574_SNP [dm3] 2L_3971574_SNP [dm6]	A	C	5.526e^-4	0.887	INTRON fred
3R	23872401	3R_23872401_SNP [dm3] 3R_28046679_SNP [dm6]	C	T	5.532e^-4	0.887	UPSTREAM CG34362 INTRON CG34362
2R	18747053	2R_18747053_SNP [dm3] 2R_22859530_SNP [dm6]	A	G	5.532e^-4	0.887	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10013733	2R_10013733_SNP [dm3] 2R_14126228_SNP [dm6]	T	A	5.534e^-4	0.887	INTRON Prosap
2R	19335460	2R_19335460_SNP [dm3] 2R_23447937_SNP [dm6]	A	G	5.539e^-4	0.887	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	16120016	2L_16120016_SNP [dm3] 2L_16120016_SNP [dm6]	G	C	5.541e^-4	0.887	INTERGENIC
X	7455776	X_7455776_SNP [dm3] X_7561743_SNP [dm6]	T	C	5.562e^-4	0.887	INTERGENIC
X	18537947	X_18537947_SNP [dm3] X_18643914_SNP [dm6]	G	A	5.578e^-4	0.887	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18537963	X_18537963_SNP [dm3] X_18643930_SNP [dm6]	G	T	5.578e^-4	0.887	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15199849	2R_15199849_SNP [dm3] 2R_19312344_SNP [dm6]	T	A	5.593e^-4	0.887	UTR_3_PRIME Rgk1 DOWNSTREAM Rgk1
2R	15199869	2R_15199869_SNP [dm3] 2R_19312364_SNP [dm6]	G	A	5.593e^-4	0.887	UTR_3_PRIME Rgk1 DOWNSTREAM Rgk1
2L	2560405	2L_2560405_INS [dm3] 2L_2560405_INS [dm6]	A	AC	5.597e^-4	0.887	INTERGENIC
3R	746431	3R_746431_SNP [dm3] 3R_4920709_SNP [dm6]	C	A	5.601e^-4	0.887	INTRON Cdep
2L	4357100	2L_4357100_SNP [dm3] 2L_4357100_SNP [dm6]	A	G	5.605e^-4	0.887	INTERGENIC
X	10723050	X_10723050_SNP [dm3] X_10829017_SNP [dm6]	C	A	5.612e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	21782554	3L_21782554_SNP [dm3] 3L_21789454_SNP [dm6]	T	A	5.615e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_sens
2R	7776228	2R_7776228_SNP [dm3] 2R_11888723_SNP [dm6]	A	T	5.617e^-4	0.887	INTRON ERp60
2R	7641281	2R_7641281_SNP [dm3] 2R_11753776_SNP [dm6]	G	T	5.617e^-4	0.887	INTERGENIC
2R	19627199	2R_19627199_SNP [dm3] 2R_23739676_SNP [dm6]	A	G	5.631e^-4	0.887	INTRON egl
3R	12077052	3R_12077052_SNP [dm3] 3R_16251330_SNP [dm6]	T	A	5.653e^-4	0.887	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25008780	3R_25008780_SNP [dm3] 3R_29183058_SNP [dm6]	C	T	5.655e^-4	0.887	INTRON CG14509
3R	25008849	3R_25008849_SNP [dm3] 3R_29183127_SNP [dm6]	G	A	5.655e^-4	0.887	INTRON CG14509
2L	4087546	2L_4087546_SNP [dm3] 2L_4087546_SNP [dm6]	C	T	5.657e^-4	0.887	INTRON ed
3R	10653164	3R_10653164_SNP [dm3] 3R_14827442_SNP [dm6]	A	G	5.663e^-4	0.887	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	5529215	X_5529215_DEL [dm3] X_5635182_DEL [dm6]	AA	A	5.666e^-4	0.887	INTRON CG42492
3L	14537954	3L_14537954_SNP [dm3] 3L_14544854_SNP [dm6]	G	T	5.671e^-4	0.887	INTRON CG9238
X	18538006	X_18538006_SNP [dm3] X_18643973_SNP [dm6]	G	A	5.677e^-4	0.887	INTRON Rip11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15920285	2R_15920285_SNP [dm3] 2R_20032780_SNP [dm6]	C	G	5.681e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15920305	2R_15920305_SNP [dm3] 2R_20032800_SNP [dm6]	A	G	5.681e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1269834	2L_1269834_SNP [dm3] 2L_1269834_SNP [dm6]	A	C	5.684e^-4	0.887	INTRON robo3
3L	18848199	3L_18848199_INS [dm3] 3L_18855099_INS [dm6]	A	AG	5.686e^-4	0.887	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19567615	3R_19567615_SNP [dm3] 3R_23741893_SNP [dm6]	C	T	5.691e^-4	0.887	INTRON Hmgcr
3R	19567625	3R_19567625_SNP [dm3] 3R_23741903_SNP [dm6]	A	G	5.691e^-4	0.887	INTRON Hmgcr
3L	12560438	3L_12560438_SNP [dm3] 3L_12567338_SNP [dm6]	G	A	5.691e^-4	0.887	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23454665	3R_23454665_SNP [dm3] 3R_27628943_SNP [dm6]	G	A	5.692e^-4	0.887	INTRON Tusp
2R	15199951	2R_15199951_SNP [dm3] 2R_19312446_SNP [dm6]	G	A	5.696e^-4	0.887	UTR_3_PRIME Rgk1	TF binding site BDTNP1_TFBS_twi
3R	6193262	3R_6193262_SNP [dm3] 3R_10367540_SNP [dm6]	A	G	5.699e^-4	0.887	UPSTREAM Rfx INTRON Rfx	TF binding site BDTNP1_TFBS_dl
2R	18746911	2R_18746911_SNP [dm3] 2R_22859388_SNP [dm6]	G	A	5.701e^-4	0.887	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16382712	2R_16382712_INS [dm3] 2R_20495207_INS [dm6]	A	ACATA	5.718e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6854230	2L_6854230_SNP [dm3] 2L_6854230_SNP [dm6]	A	G	5.725e^-4	0.887	UTR_5_PRIME l_2_k09022 DOWNSTREAM Rca1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6048867	2R_6048867_SNP [dm3] 2R_10161362_SNP [dm6]	A	T	5.732e^-4	0.887	INTRON KCNQ
3L	10357394	3L_10357394_SNP [dm3] 3L_10364294_SNP [dm6]	T	A	5.737e^-4	0.887	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
X	18527839	X_18527839_SNP [dm3] X_18633806_SNP [dm6]	T	A	5.738e^-4	0.887	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13097852	2R_13097852_SNP [dm3] 2R_17210347_SNP [dm6]	G	C	5.742e^-4	0.887	INTERGENIC
X	12445662	X_12445662_INS [dm3] X_12551629_INS [dm6]	T	TTATT	5.746e^-4	0.887	INTRON CG43921
X	3332714	X_3332714_SNP [dm3] X_3438681_SNP [dm6]	G	T	5.748e^-4	0.887	INTRON CR44999 & 1 other
2L	12533707	2L_12533707_SNP [dm3] 2L_12533707_SNP [dm6]	T	G	5.755e^-4	0.887	INTRON bun
3L	705499	3L_705499_SNP [dm3] 3L_705499_SNP [dm6]	T	C	5.758e^-4	0.887	DOWNSTREAM CG13895 EXON CR44514
3R	18548021	3R_18548021_SNP [dm3] 3R_22722299_SNP [dm6]	A	T	5.764e^-4	0.887	INTRON Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17160851	2R_17160851_SNP [dm3] 2R_21273346_SNP [dm6]	A	G	5.772e^-4	0.887	INTRON Rgk3
2L	529999	2L_529999_SNP [dm3] 2L_529999_SNP [dm6]	C	T	5.772e^-4	0.887	INTRON ush	regulatory region REDfly_CRMs
2R	1628627	2R_1628627_SNP [dm3] 2R_5741122_SNP [dm6]	G	T	5.772e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
4	903363	4_903363_SNP [dm3] 4_882737_SNP [dm6]	C	G	5.782e^-4	0.887	INTRON unc-13 EXON CR44029
4	908833	4_908833_SNP [dm3] 4_888207_SNP [dm6]	C	T	5.782e^-4	0.887	SYNONYMOUS_CODING unc-13 INTRON unc-13	TF binding site mE1_TFBS_sens
4	915693	4_915693_SNP [dm3] 4_895067_SNP [dm6]	A	G	5.782e^-4	0.887	INTRON unc-13	transposable element FlyBase
4	915814	4_915814_SNP [dm3] 4_895188_SNP [dm6]	G	A	5.782e^-4	0.887	INTRON unc-13	transposable element FlyBase
4	926389	4_926389_SNP [dm3] 4_905763_SNP [dm6]	G	A	5.782e^-4	0.887	UTR_5_PRIME unc-13 UPSTREAM unc-13 & 1 other INTRON CR43361	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8002973	3L_8002973_SNP [dm3] 3L_8009873_SNP [dm6]	G	A	5.791e^-4	0.887	INTRON nmo
X	13690073	X_13690073_SNP [dm3] X_13796040_SNP [dm6]	T	G	5.796e^-4	0.887	DOWNSTREAM CG10996 INTRON inaE
3R	12073529	3R_12073529_SNP [dm3] 3R_16247807_SNP [dm6]	C	T	5.797e^-4	0.887	INTRON tara	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
3R	20822455	3R_20822455_SNP [dm3] 3R_24996733_SNP [dm6]	A	C	5.802e^-4	0.887	INTRON tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	12017585	X_12017585_SNP [dm3] X_12123552_SNP [dm6]	A	T	5.807e^-4	0.887	INTRON Ten-a
2L	3971599	2L_3971599_DEL [dm3] 2L_3971599_DEL [dm6]	TAA	T	5.807e^-4	0.887	INTRON fred
2R	7690353	2R_7690353_SNP [dm3] 2R_11802848_SNP [dm6]	G	T	5.814e^-4	0.887	INTRON ths
X	19200512	X_19200512_DEL [dm3] X_19306479_DEL [dm6]	ATGTT	C	5.821e^-4	0.887	INTRON CG8051
2L	8923597	2L_8923597_SNP [dm3] 2L_8923597_SNP [dm6]	C	T	5.832e^-4	0.887	INTRON CG34398
2L	10318693	2L_10318693_DEL [dm3] 2L_10318693_DEL [dm6]	GCGT	G	5.839e^-4	0.887		TF binding site mE1_TFBS_sens
3L	10628203	3L_10628203_SNP [dm3] 3L_10635103_SNP [dm6]	G	A	5.850e^-4	0.887	DOWNSTREAM CG34001 INTRON E_z_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3714669	X_3714669_SNP [dm3] X_3820636_SNP [dm6]	C	T	5.862e^-4	0.887	DOWNSTREAM tRNA:CR32785 INTRON ec
2L	8795354	2L_8795354_SNP [dm3] 2L_8795354_SNP [dm6]	T	G	5.867e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	26698719	3R_26698719_SNP [dm3] 3R_30872997_SNP [dm6]	T	C	5.872e^-4	0.887	UPSTREAM CG15545 INTERGENIC
3R	26698724	3R_26698724_SNP [dm3] 3R_30873002_SNP [dm6]	C	G	5.872e^-4	0.887	UPSTREAM CG15545 INTERGENIC
3R	6921131	3R_6921131_SNP [dm3] 3R_11095409_SNP [dm6]	G	T	5.872e^-4	0.887	INTERGENIC
3R	19674466	3R_19674466_SNP [dm3] 3R_23848744_SNP [dm6]	G	A	5.874e^-4	0.887	INTRON CG34355	TF binding site mE1_TFBS_cad
2L	17499375	2L_17499375_SNP [dm3] 2L_17499375_SNP [dm6]	T	A	5.882e^-4	0.887	UTR_3_PRIME CG6412 UPSTREAM CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7784407	2R_7784407_SNP [dm3] 2R_11896902_SNP [dm6]	T	G	5.902e^-4	0.887	UTR_3_PRIME MCPH1 INTRON MCPH1
3L	821226	3L_821226_SNP [dm3] 3L_821226_SNP [dm6]	T	A	5.907e^-4	0.887	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4157662	2L_4157662_INS [dm3] 2L_4157662_INS [dm6]	T	TCCAAT	5.907e^-4	0.887	INTERGENIC
3L	9951737	3L_9951737_DEL [dm3] 3L_9958637_DEL [dm6]	CAT	C	5.915e^-4	0.887	INTRON CG34356
3L	1399790	3L_1399790_SNP [dm3] 3L_1399790_SNP [dm6]	G	A	5.926e^-4	0.887	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
3R	10548856	3R_10548856_SNP [dm3] 3R_14723134_SNP [dm6]	T	C	5.935e^-4	0.887	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	10548864	3R_10548864_SNP [dm3] 3R_14723142_SNP [dm6]	A	T	5.935e^-4	0.887	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	14385358	X_14385358_DEL [dm3] X_14491325_DEL [dm6]	ATCACAGAAT	A	5.935e^-4	0.887	INTERGENIC
3R	2343778	3R_2343778_SNP [dm3] 3R_6518056_SNP [dm6]	G	A	5.941e^-4	0.887	INTERGENIC
3R	6957986	3R_6957986_SNP [dm3] 3R_11132264_SNP [dm6]	T	C	5.943e^-4	0.887	INTERGENIC
3L	7586343	3L_7586343_SNP [dm3] 3L_7593243_SNP [dm6]	G	A	5.951e^-4	0.887	UTR_5_PRIME CG33275
2L	3634108	2L_3634108_SNP [dm3] 2L_3634108_SNP [dm6]	T	A	5.952e^-4	0.887	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	1269575	2L_1269575_SNP [dm3] 2L_1269575_SNP [dm6]	T	G	5.955e^-4	0.887	INTRON robo3
3R	12073569	3R_12073569_SNP [dm3] 3R_16247847_SNP [dm6]	C	T	5.971e^-4	0.887	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8426584	X_8426584_SNP [dm3] X_8532551_SNP [dm6]	A	G	5.982e^-4	0.887	INTRON Nrg
X	4415499	X_4415499_SNP [dm3] X_4521466_SNP [dm6]	G	A	5.983e^-4	0.887	INTRON CR32773
3R	19541666	3R_19541666_DEL [dm3] 3R_23715944_DEL [dm6]	CC	C	5.985e^-4	0.887	INTRON nau	regulatory region REDfly_CRMs
X	8764365	X_8764365_SNP [dm3] X_8870332_SNP [dm6]	A	T	5.995e^-4	0.887	SYNONYMOUS_CODING CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	14296491	2R_14296491_SNP [dm3] 2R_18408986_SNP [dm6]	T	A	5.997e^-4	0.887	UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other INTERGENIC
X	3360040	X_3360040_SNP [dm3] X_3466007_SNP [dm6]	C	A	5.999e^-4	0.887	UTR_3_PRIME CG12206 INTRON CR44999
X	3360052	X_3360052_SNP [dm3] X_3466019_SNP [dm6]	T	A	5.999e^-4	0.887	UTR_3_PRIME CG12206 INTRON CR44999
3L	18012154	3L_18012154_SNP [dm3] 3L_18019054_SNP [dm6]	A	C	6.033e^-4	0.887	INTRON Eip75B	TF binding site mE1_TFBS_HSA
2L	4087539	2L_4087539_SNP [dm3] 2L_4087539_SNP [dm6]	A	T	6.034e^-4	0.887	INTRON ed
3R	2711104	3R_2711104_SNP [dm3] 3R_6885382_SNP [dm6]	A	C	6.038e^-4	0.887	UPSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5557597	X_5557597_SNP [dm3] X_5663564_SNP [dm6]	G	A	6.038e^-4	0.887	UPSTREAM CG42265 EXON CR45520	TF binding site mE1_TFBS_HSA
3R	24084407	3R_24084407_SNP [dm3] 3R_28258685_SNP [dm6]	C	T	6.041e^-4	0.887	INTERGENIC
X	2305675	X_2305675_SNP [dm3] X_2411642_SNP [dm6]	A	T	6.053e^-4	0.887	UPSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9313611	2L_9313611_SNP [dm3] 2L_9313611_SNP [dm6]	C	A	6.060e^-4	0.887	INTERGENIC
2R	13097787	2R_13097787_SNP [dm3] 2R_17210282_SNP [dm6]	C	T	6.061e^-4	0.887	INTERGENIC
2L	3971603	2L_3971603_SNP [dm3] 2L_3971603_SNP [dm6]	T	G	6.067e^-4	0.887	INTRON fred
3L	369721	3L_369721_SNP [dm3] 3L_369721_SNP [dm6]	T	A	6.070e^-4	0.887	INTRON trh
3R	23520150	3R_23520150_SNP [dm3] 3R_27694428_SNP [dm6]	C	G	6.074e^-4	0.887	NON_SYNONYMOUS_CODING CG43319 UPSTREAM Acp98AB & 1 other
2L	12209700	2L_12209700_SNP [dm3] 2L_12209700_SNP [dm6]	A	G	6.079e^-4	0.887	SYNONYMOUS_CODING CG31759 INTRON aret
2L	5628113	2L_5628113_SNP [dm3] 2L_5628113_SNP [dm6]	C	A	6.091e^-4	0.887	INTRON CG31646
3R	9733964	3R_9733964_SNP [dm3] 3R_13908242_SNP [dm6]	T	C	6.102e^-4	0.887	INTERGENIC
3R	11906461	3R_11906461_SNP [dm3] 3R_16080739_SNP [dm6]	T	C	6.106e^-4	0.887	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3R	19303914	3R_19303914_SNP [dm3] 3R_23478192_SNP [dm6]	A	T	6.108e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
X	21893714	X_21893714_SNP [dm3] X_22491878_SNP [dm6]	A	T	6.125e^-4	0.887	START_GAINED l_1_G0196 UTR_5_PRIME l_1_G0196 INTRON l_1_G0196
4	916878	4_916878_SNP [dm3] 4_896252_SNP [dm6]	G	T	6.129e^-4	0.887	INTRON unc-13
3R	23510608	3R_23510608_SNP [dm3] 3R_27684886_SNP [dm6]	G	A	6.140e^-4	0.887	DOWNSTREAM CG31055 INTERGENIC
X	22220967	X_22220967_SNP [dm3] X_22819131_SNP [dm6]	G	A	6.154e^-4	0.887	INTERGENIC
3L	9839574	3L_9839574_SNP [dm3] 3L_9846474_SNP [dm6]	T	C	6.155e^-4	0.887	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
3L	9839580	3L_9839580_SNP [dm3] 3L_9846480_SNP [dm6]	T	C	6.155e^-4	0.887	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
3R	2868170	3R_2868170_SNP [dm3] 3R_7042448_SNP [dm6]	G	A	6.156e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	18533771	X_18533771_SNP [dm3] X_18639738_SNP [dm6]	G	A	6.157e^-4	0.887	SYNONYMOUS_CODING Rip11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14043386	3R_14043386_SNP [dm3] 3R_18217664_SNP [dm6]	G	A	6.162e^-4	0.887	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad
3L	14335599	3L_14335599_DEL [dm3] 3L_14342499_DEL [dm6]	CAGTGC	C	6.163e^-4	0.887	INTRON fz
2R	12086916	2R_12086916_SNP [dm3] 2R_16199411_SNP [dm6]	C	T	6.172e^-4	0.887	UTR_3_PRIME CG44243 DOWNSTREAM shark & 2 others
2R	15426394	2R_15426394_SNP [dm3] 2R_19538889_SNP [dm6]	T	G	6.180e^-4	0.887	INTRON sm
3R	8088451	3R_8088451_SNP [dm3] 3R_12262729_SNP [dm6]	T	C	6.183e^-4	0.887	NON_SYNONYMOUS_CODING CG44037 INTRON svp
3R	8088453	3R_8088453_SNP [dm3] 3R_12262731_SNP [dm6]	G	A	6.183e^-4	0.887	NON_SYNONYMOUS_CODING CG44037 INTRON svp
3R	8088457	3R_8088457_SNP [dm3] 3R_12262735_SNP [dm6]	T	C	6.183e^-4	0.887	NON_SYNONYMOUS_CODING CG44037 INTRON svp
2L	12873542	2L_12873542_SNP [dm3] 2L_12873542_SNP [dm6]	A	G	6.184e^-4	0.887	INTERGENIC
2R	13208122	2R_13208122_SNP [dm3] 2R_17320617_SNP [dm6]	G	T	6.185e^-4	0.887	INTRON mbl
2L	10454537	2L_10454537_SNP [dm3] 2L_10454537_SNP [dm6]	A	T	6.195e^-4	0.887	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19269661	2R_19269661_SNP [dm3] 2R_23382138_SNP [dm6]	G	A	6.211e^-4	0.887	NON_SYNONYMOUS_CODING yellow-d2 INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.580e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02513

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	7.2558	0.0071

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1434 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12101676	3L_12101676_SNP [dm3] 3L_12108576_SNP [dm6]	A	C	2.233e^-7	0.411	INTERGENIC
2R	11455153	2R_11455153_SNP [dm3] 2R_15567648_SNP [dm6]	C	T	6.328e^-7	0.425	SYNONYMOUS_CODING Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21089904	2R_21089904_SNP [dm3] 2R_25202381_SNP [dm6]	C	T	8.379e^-7	0.425	INTRON CG9380	TF binding site mE1_TFBS_Kr
3L	12101680	3L_12101680_SNP [dm3] 3L_12108580_SNP [dm6]	A	C	9.233e^-7	0.425	INTERGENIC
3L	12101638	3L_12101638_SNP [dm3] 3L_12108538_SNP [dm6]	A	T	1.437e^-6	0.529	INTERGENIC
3L	12101633	3L_12101633_SNP [dm3] 3L_12108533_SNP [dm6]	G	A	2.494e^-6	0.703	INTERGENIC
2R	21088384	2R_21088384_SNP [dm3] 2R_25200861_SNP [dm6]	G	T	2.820e^-6	0.703	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14532872	3R_14532872_SNP [dm3] 3R_18707150_SNP [dm6]	C	T	3.054e^-6	0.703	INTRON VAChT & 1 other
3L	12101693	3L_12101693_SNP [dm3] 3L_12108593_SNP [dm6]	C	A	4.058e^-6	0.83	INTERGENIC
3L	15942642	3L_15942642_SNP [dm3] 3L_15949542_SNP [dm6]	T	G	6.234e^-6	0.999	INTRON Pka-C3
3L	13964679	3L_13964679_SNP [dm3] 3L_13971579_SNP [dm6]	C	T	7.167e^-6	0.999	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3
3R	14532874	3R_14532874_SNP [dm3] 3R_18707152_SNP [dm6]	G	C	7.850e^-6	0.999	INTRON VAChT & 1 other
2L	18458186	2L_18458186_INS [dm3] 2L_18458186_INS [dm6]	T	TGT	9.153e^-6	0.999	INTRON let-7-C
3R	25454130	3R_25454130_SNP [dm3] 3R_29628408_SNP [dm6]	C	T	9.949e^-6	0.999	INTERGENIC
X	22184052	X_22184052_SNP [dm3] X_22782216_SNP [dm6]	T	C	1.037e^-5	0.999	INTRON CR44997
X	4444455	X_4444455_SNP [dm3] X_4550422_SNP [dm6]	T	C	1.059e^-5	0.999	SYNONYMOUS_CODING CG11436 DOWNSTREAM CG15912 INTRON CR32773
2R	11166724	2R_11166724_DEL [dm3] 2R_15279219_DEL [dm6]	TA	C	1.059e^-5	0.999	INTRON Trpm
3L	6096266	3L_6096266_SNP [dm3] 3L_6103166_SNP [dm6]	T	A	1.190e^-5	0.999	INTRON Ets65A
2R	21094737	2R_21094737_SNP [dm3] 2R_25207214_SNP [dm6]	G	T	1.275e^-5	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21094723	2R_21094723_SNP [dm3] 2R_25207200_SNP [dm6]	A	T	1.346e^-5	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	22183854	X_22183854_SNP [dm3] X_22782018_SNP [dm6]	A	C	1.382e^-5	0.999	INTRON CR44997
X	9682482	X_9682482_SNP [dm3] X_9788449_SNP [dm6]	A	C	1.412e^-5	0.999	UTR_5_PRIME CG32698 UPSTREAM CG32698 INTRON CG32698
2L	3268868	2L_3268868_SNP [dm3] 2L_3268868_SNP [dm6]	A	G	1.414e^-5	0.999	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
X	22183757	X_22183757_SNP [dm3] X_22781921_SNP [dm6]	T	C	1.593e^-5	0.999	INTRON CR44997
X	22183781	X_22183781_SNP [dm3] X_22781945_SNP [dm6]	G	T	1.593e^-5	0.999	INTRON CR44997
2L	3812721	2L_3812721_SNP [dm3] 2L_3812721_SNP [dm6]	G	A	1.855e^-5	0.999	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22183899	X_22183899_SNP [dm3] X_22782063_SNP [dm6]	C	T	2.009e^-5	0.999	INTRON CR44997
3L	14444079	3L_14444079_SNP [dm3] 3L_14450979_SNP [dm6]	C	T	2.185e^-5	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_dl
3L	14444092	3L_14444092_SNP [dm3] 3L_14450992_SNP [dm6]	A	G	2.185e^-5	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_dl
2R	21094745	2R_21094745_SNP [dm3] 2R_25207222_SNP [dm6]	A	T	2.546e^-5	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6360334	2L_6360334_SNP [dm3] 2L_6360334_SNP [dm6]	C	T	2.561e^-5	0.999	UPSTREAM CR44778 & 1 other INTERGENIC
X	4444421	X_4444421_SNP [dm3] X_4550388_SNP [dm6]	C	T	2.644e^-5	0.999	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
X	4444427	X_4444427_SNP [dm3] X_4550394_SNP [dm6]	G	A	2.644e^-5	0.999	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3R	2805065	3R_2805065_SNP [dm3] 3R_6979343_SNP [dm6]	T	A	2.852e^-5	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10422552	3L_10422552_SNP [dm3] 3L_10429452_SNP [dm6]	G	C	2.984e^-5	0.999	DOWNSTREAM Ir67b INTERGENIC
3R	25238489	3R_25238489_SNP [dm3] 3R_29412767_SNP [dm6]	T	C	3.243e^-5	0.999	INTRON Ptp99A
X	6315773	X_6315773_SNP [dm3] X_6421740_SNP [dm6]	C	A	3.245e^-5	0.999	INTERGENIC
2L	3812724	2L_3812724_SNP [dm3] 2L_3812724_SNP [dm6]	G	A	3.377e^-5	0.999	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10269215	3L_10269215_DEL [dm3] 3L_10276115_DEL [dm6]	TACTAT	T	3.445e^-5	0.999	INTERGENIC
3L	19409341	3L_19409341_SNP [dm3] 3L_19416241_SNP [dm6]	C	T	3.813e^-5	0.999	INTERGENIC
3R	25453959	3R_25453959_SNP [dm3] 3R_29628237_SNP [dm6]	A	G	4.008e^-5	0.999	INTERGENIC
2L	13135940	2L_13135940_SNP [dm3] 2L_13135940_SNP [dm6]	C	T	4.088e^-5	0.999	INTERGENIC
2L	15136254	2L_15136254_SNP [dm3] 2L_15136254_SNP [dm6]	C	A	4.173e^-5	0.999	INTERGENIC
2R	11132781	2R_11132781_SNP [dm3] 2R_15245276_SNP [dm6]	A	T	4.230e^-5	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	7203712	3L_7203712_SNP [dm3] 3L_7210612_SNP [dm6]	G	A	4.307e^-5	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1351957	2L_1351957_SNP [dm3] 2L_1351957_SNP [dm6]	C	G	4.623e^-5	0.999	NON_SYNONYMOUS_CODING CG5556
2L	6354138	2L_6354138_SNP [dm3] 2L_6354138_SNP [dm6]	C	A	4.648e^-5	0.999	NON_SYNONYMOUS_CODING ppk7 UPSTREAM ppk14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14839166	3R_14839166_SNP [dm3] 3R_19013444_SNP [dm6]	T	C	4.674e^-5	0.999	SYNONYMOUS_CODING gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	605227	3L_605227_SNP [dm3] 3L_605227_SNP [dm6]	T	C	4.894e^-5	0.999	NON_SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6359934	2L_6359934_SNP [dm3] 2L_6359934_SNP [dm6]	T	C	4.930e^-5	0.999	UPSTREAM CR44778 EXON CR44777
3L	19095352	3L_19095352_SNP [dm3] 3L_19102252_SNP [dm6]	T	A	5.208e^-5	0.999	INTERGENIC
3L	15399291	3L_15399291_SNP [dm3] 3L_15406191_SNP [dm6]	A	C	5.281e^-5	0.999	INTERGENIC
2L	3813162	2L_3813162_SNP [dm3] 2L_3813162_SNP [dm6]	T	C	5.405e^-5	0.999	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2742185	2L_2742185_SNP [dm3] 2L_2742185_SNP [dm6]	T	C	5.511e^-5	0.999	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12870466	X_12870466_SNP [dm3] X_12976433_SNP [dm6]	T	C	5.562e^-5	0.999	UPSTREAM CG12716 INTERGENIC	TF binding site mE1_TFBS_inv
3R	8814550	3R_8814550_SNP [dm3] 3R_12988828_SNP [dm6]	C	T	5.832e^-5	0.999	SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
2R	7959725	2R_7959725_DEL [dm3] 2R_12072220_DEL [dm6]	TT	T	5.832e^-5	0.999	INTRON CG8888
3L	7718919	3L_7718919_SNP [dm3] 3L_7725819_SNP [dm6]	C	G	5.938e^-5	0.999	INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24326441	3R_24326441_SNP [dm3] 3R_28500719_SNP [dm6]	C	T	6.032e^-5	0.999	INTRON Dhc98D
2R	10618434	2R_10618434_SNP [dm3] 2R_14730929_SNP [dm6]	G	A	6.066e^-5	0.999	INTERGENIC
3L	1374608	3L_1374608_SNP [dm3] 3L_1374608_SNP [dm6]	A	G	6.086e^-5	0.999	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7759022	X_7759022_SNP [dm3] X_7864989_SNP [dm6]	T	G	6.378e^-5	0.999	NON_SYNONYMOUS_CODING Ir7b
X	7759045	X_7759045_SNP [dm3] X_7865012_SNP [dm6]	C	T	6.378e^-5	0.999	NON_SYNONYMOUS_CODING Ir7b
X	19993724	X_19993724_SNP [dm3] X_20099691_SNP [dm6]	C	A	6.432e^-5	0.999	INTERGENIC
X	19993730	X_19993730_SNP [dm3] X_20099697_SNP [dm6]	C	T	6.432e^-5	0.999	INTERGENIC
X	19993737	X_19993737_SNP [dm3] X_20099704_SNP [dm6]	A	T	6.432e^-5	0.999	INTERGENIC
2R	21090181	2R_21090181_SNP [dm3] 2R_25202658_SNP [dm6]	G	A	6.485e^-5	0.999	INTRON CG9380	TF binding site mE1_TFBS_Kr
X	15143624	X_15143624_SNP [dm3] X_15249591_SNP [dm6]	G	A	6.500e^-5	0.999	INTERGENIC
3R	10689207	3R_10689207_SNP [dm3] 3R_14863485_SNP [dm6]	T	G	6.635e^-5	0.999	INTRON btsz
2R	12475515	2R_12475515_SNP [dm3] 2R_16588010_SNP [dm6]	A	G	6.637e^-5	0.999	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19095356	3L_19095356_SNP [dm3] 3L_19102256_SNP [dm6]	G	A	6.647e^-5	0.999	INTERGENIC
2L	4584699	2L_4584699_SNP [dm3] 2L_4584699_SNP [dm6]	A	G	6.783e^-5	0.999	INTRON dp
3R	9045026	3R_9045026_SNP [dm3] 3R_13219304_SNP [dm6]	A	G	6.793e^-5	0.999	DOWNSTREAM CG8476 INTERGENIC
2R	7959730	2R_7959730_SNP [dm3] 2R_12072225_SNP [dm6]	A	T	6.795e^-5	0.999	INTRON CG8888
2L	10703063	2L_10703063_SNP [dm3] 2L_10703063_SNP [dm6]	A	T	6.862e^-5	0.999	UPSTREAM CG6415 INTRON Lip2
X	14763162	X_14763162_SNP [dm3] X_14869129_SNP [dm6]	A	C	6.966e^-5	0.999	INTRON Flo2 & 1 other
3L	4345738	3L_4345738_SNP [dm3] 3L_4345738_SNP [dm6]	C	T	6.985e^-5	0.999	UPSTREAM CR45156 & 1 other INTRON Cip4
2L	5551248	2L_5551248_SNP [dm3] 2L_5551248_SNP [dm6]	G	C	7.170e^-5	0.999	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15967265	2R_15967265_SNP [dm3] 2R_20079760_SNP [dm6]	T	A	7.213e^-5	0.999	INTERGENIC
2L	1351986	2L_1351986_SNP [dm3] 2L_1351986_SNP [dm6]	T	C	7.319e^-5	0.999	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
3L	12343122	3L_12343122_SNP [dm3] 3L_12350022_SNP [dm6]	C	T	7.399e^-5	0.999	INTRON CrzR
2R	21091912	2R_21091912_SNP [dm3] 2R_25204389_SNP [dm6]	A	C	7.418e^-5	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr transposable element FlyBase
3L	12720534	3L_12720534_SNP [dm3] 3L_12727434_SNP [dm6]	A	T	7.552e^-5	0.999	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	25453601	3R_25453601_SNP [dm3] 3R_29627879_SNP [dm6]	G	T	7.638e^-5	0.999	INTERGENIC
3L	10946474	3L_10946474_DEL [dm3] 3L_10953374_DEL [dm6]	CCGATACCGAATC...	C	7.665e^-5	0.999	INTERGENIC
2L	6354270	2L_6354270_SNP [dm3] 2L_6354270_SNP [dm6]	C	T	7.717e^-5	0.999	NON_SYNONYMOUS_CODING ppk7 UPSTREAM ppk14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6996569	3L_6996569_SNP [dm3] 3L_7003469_SNP [dm6]	C	A	7.803e^-5	0.999	INTRON Mp
2R	19054837	2R_19054837_SNP [dm3] 2R_23167314_SNP [dm6]	A	T	7.813e^-5	0.999	INTRON CG34371	TF binding site mE1_TFBS_chinmo
2R	21088228	2R_21088228_SNP [dm3] 2R_25200705_SNP [dm6]	T	A	7.829e^-5	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10524694	2R_10524694_SNP [dm3] 2R_14637189_SNP [dm6]	C	A	7.850e^-5	0.999	INTERGENIC
2L	9757855	2L_9757855_SNP [dm3] 2L_9757855_SNP [dm6]	T	A	7.879e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757864	2L_9757864_SNP [dm3] 2L_9757864_SNP [dm6]	A	T	7.879e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757867	2L_9757867_SNP [dm3] 2L_9757867_SNP [dm6]	T	G	7.879e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	14444597	3L_14444597_SNP [dm3] 3L_14451497_SNP [dm6]	C	A	7.934e^-5	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6352766	2L_6352766_SNP [dm3] 2L_6352766_SNP [dm6]	G	A	7.972e^-5	0.999	SYNONYMOUS_CODING ppk7
2R	21053707	2R_21053707_SNP [dm3] 2R_25166184_SNP [dm6]	C	A	8.020e^-5	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10688964	2R_10688964_SNP [dm3] 2R_14801459_SNP [dm6]	A	G	8.073e^-5	0.999	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9584308	3R_9584308_SNP [dm3] 3R_13758586_SNP [dm6]	T	G	8.073e^-5	0.999	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12412753	3L_12412753_SNP [dm3] 3L_12419653_SNP [dm6]	G	C	8.108e^-5	0.999	INTERGENIC
3L	7718923	3L_7718923_SNP [dm3] 3L_7725823_SNP [dm6]	G	T	8.165e^-5	0.999	INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12517890	X_12517890_SNP [dm3] X_12623857_SNP [dm6]	A	G	8.336e^-5	0.999	UPSTREAM CG15728 INTERGENIC
3R	16109564	3R_16109564_SNP [dm3] 3R_20283842_SNP [dm6]	C	G	8.381e^-5	0.999	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1628864	3L_1628864_SNP [dm3] 3L_1628864_SNP [dm6]	G	A	8.386e^-5	0.999	UPSTREAM CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl
3L	14445221	3L_14445221_SNP [dm3] 3L_14452121_SNP [dm6]	A	T	8.451e^-5	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14445355	3L_14445355_SNP [dm3] 3L_14452255_SNP [dm6]	T	G	8.451e^-5	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	19152735	3L_19152735_SNP [dm3] 3L_19159635_SNP [dm6]	A	G	8.541e^-5	0.999	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11455530	2R_11455530_SNP [dm3] 2R_15568025_SNP [dm6]	T	G	8.670e^-5	0.999	UPSTREAM CG30466 INTRON Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19153847	3L_19153847_SNP [dm3] 3L_19160747_SNP [dm6]	A	G	8.686e^-5	0.999	INTRON fz2
3L	15943265	3L_15943265_SNP [dm3] 3L_15950165_SNP [dm6]	G	T	8.807e^-5	0.999	INTRON Pka-C3
2R	8994365	2R_8994365_INS [dm3] 2R_13106860_INS [dm6]	T	TC	8.992e^-5	0.999	INTERGENIC
3L	14367882	3L_14367882_INS [dm3] 3L_14374782_INS [dm6]	C	CC	8.999e^-5	0.999	INTERGENIC
2L	9757880	2L_9757880_SNP [dm3] 2L_9757880_SNP [dm6]	T	G	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757885	2L_9757885_SNP [dm3] 2L_9757885_SNP [dm6]	T	C	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757887	2L_9757887_SNP [dm3] 2L_9757887_SNP [dm6]	C	A	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757896	2L_9757896_SNP [dm3] 2L_9757896_SNP [dm6]	T	G	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757897	2L_9757897_SNP [dm3] 2L_9757897_SNP [dm6]	G	T	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757907	2L_9757907_SNP [dm3] 2L_9757907_SNP [dm6]	A	C	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757914	2L_9757914_SNP [dm3] 2L_9757914_SNP [dm6]	A	T	9.074e^-5	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	2080891	3L_2080891_SNP [dm3] 3L_2080891_SNP [dm6]	T	C	9.183e^-5	0.999	SYNONYMOUS_CODING sls INTRON sls
X	13335540	X_13335540_SNP [dm3] X_13441507_SNP [dm6]	C	A	9.199e^-5	0.999	INTERGENIC
2R	14996199	2R_14996199_SNP [dm3] 2R_19108694_SNP [dm6]	T	G	9.283e^-5	0.999	INTRON 5-HT1A
2R	14996202	2R_14996202_SNP [dm3] 2R_19108697_SNP [dm6]	A	T	9.283e^-5	0.999	INTRON 5-HT1A
3R	23667846	3R_23667846_SNP [dm3] 3R_27842124_SNP [dm6]	G	C	9.504e^-5	0.999	INTRON CG34353
3R	12908592	3R_12908592_SNP [dm3] 3R_17082870_SNP [dm6]	C	G	9.532e^-5	0.999	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9046458	3R_9046458_SNP [dm3] 3R_13220736_SNP [dm6]	C	T	9.611e^-5	0.999	UPSTREAM CG8476 INTERGENIC
3R	25419705	3R_25419705_SNP [dm3] 3R_29593983_SNP [dm6]	G	T	9.714e^-5	0.999	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2747283	2L_2747283_SNP [dm3] 2L_2747283_SNP [dm6]	G	T	9.794e^-5	0.999	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19919225	X_19919225_SNP [dm3] X_20025192_SNP [dm6]	C	A	9.834e^-5	0.999	DOWNSTREAM tRNA:CR32826 INTRON Dop2R
X	19919254	X_19919254_SNP [dm3] X_20025221_SNP [dm6]	A	T	9.834e^-5	0.999	DOWNSTREAM tRNA:CR32826 INTRON Dop2R
3R	3972214	3R_3972214_SNP [dm3] 3R_8146492_SNP [dm6]	T	G	1.000e^-4	0.999	DOWNSTREAM grn INTERGENIC
3R	5771597	3R_5771597_SNP [dm3] 3R_9945875_SNP [dm6]	A	T	1.018e^-4	0.999	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13087594	2L_13087594_SNP [dm3] 2L_13087594_SNP [dm6]	G	A	1.019e^-4	0.999	INTERGENIC
3R	25532537	3R_25532537_SNP [dm3] 3R_29706815_SNP [dm6]	G	A	1.038e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9560987	3R_9560987_SNP [dm3] 3R_13735265_SNP [dm6]	C	T	1.060e^-4	0.999	UPSTREAM CG34383 INTRON CG34383
3R	9046430	3R_9046430_SNP [dm3] 3R_13220708_SNP [dm6]	C	G	1.062e^-4	0.999	UPSTREAM CG8476 INTERGENIC
3R	24512445	3R_24512445_SNP [dm3] 3R_28686723_SNP [dm6]	G	T	1.063e^-4	0.999	INTRON CG9990
2R	18667635	2R_18667635_SNP [dm3] 2R_22780130_SNP [dm6]	A	G	1.090e^-4	0.999	INTRON CG42260
2R	18667687	2R_18667687_SNP [dm3] 2R_22780182_SNP [dm6]	A	C	1.090e^-4	0.999	INTRON CG42260
X	6336149	X_6336149_DEL [dm3] X_6442116_DEL [dm6]	TA	T	1.101e^-4	0.999	INTRON CG42340
3L	4915140	3L_4915140_SNP [dm3] 3L_4915140_SNP [dm6]	T	G	1.114e^-4	0.999	INTRON Rh50
2L	9757908	2L_9757908_SNP [dm3] 2L_9757908_SNP [dm6]	G	T	1.118e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	10703073	2L_10703073_DEL [dm3] 2L_10703073_DEL [dm6]	TTTATTT	AC	1.124e^-4	0.999	UPSTREAM CG6415 INTRON Lip2
3R	19796150	3R_19796150_SNP [dm3] 3R_23970428_SNP [dm6]	T	A	1.135e^-4	0.999	INTRON CG31140
2R	7630726	2R_7630726_SNP [dm3] 2R_11743221_SNP [dm6]	C	T	1.144e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	11068890	2L_11068890_SNP [dm3] 2L_11068890_SNP [dm6]	C	A	1.144e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14995996	2R_14995996_SNP [dm3] 2R_19108491_SNP [dm6]	T	G	1.171e^-4	0.999	INTRON 5-HT1A
2L	6353686	2L_6353686_SNP [dm3] 2L_6353686_SNP [dm6]	A	G	1.180e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7959753	2R_7959753_SNP [dm3] 2R_12072248_SNP [dm6]	T	C	1.182e^-4	0.999	INTRON CG8888
2L	10920149	2L_10920149_SNP [dm3] 2L_10920149_SNP [dm6]	T	A	1.199e^-4	0.999	INTRON dpr2
2R	7043333	2R_7043333_SNP [dm3] 2R_11155828_SNP [dm6]	A	C	1.236e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
X	16337405	X_16337405_SNP [dm3] X_16443372_SNP [dm6]	A	T	1.238e^-4	0.999	INTRON rngo	TF binding site mE1_TFBS_cad
3L	12343079	3L_12343079_SNP [dm3] 3L_12349979_SNP [dm6]	T	G	1.250e^-4	0.999	INTRON CrzR
3L	14390283	3L_14390283_SNP [dm3] 3L_14397183_SNP [dm6]	T	A	1.251e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14390294	3L_14390294_SNP [dm3] 3L_14397194_SNP [dm6]	A	T	1.251e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25658648	3R_25658648_SNP [dm3] 3R_29832926_SNP [dm6]	T	A	1.266e^-4	0.999	INTRON Atg16
3L	17472771	3L_17472771_SNP [dm3] 3L_17479671_SNP [dm6]	C	G	1.268e^-4	0.999	NON_SYNONYMOUS_CODING qjt UPSTREAM CG13733 DOWNSTREAM CG6333
X	2392200	X_2392200_SNP [dm3] X_2498167_SNP [dm6]	C	T	1.269e^-4	0.999	INTRON trol
2R	11295777	2R_11295777_SNP [dm3] 2R_15408272_SNP [dm6]	C	A	1.272e^-4	0.999	UPSTREAM Mtk INTRON CG43729
3L	12700529	3L_12700529_SNP [dm3] 3L_12707429_SNP [dm6]	A	C	1.305e^-4	0.999	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16337406	X_16337406_SNP [dm3] X_16443373_SNP [dm6]	T	A	1.306e^-4	0.999	INTRON rngo	TF binding site mE1_TFBS_cad
X	11232278	X_11232278_SNP [dm3] X_11338245_SNP [dm6]	G	A	1.308e^-4	0.999	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	8942596	2R_8942596_SNP [dm3] 2R_13055091_SNP [dm6]	A	G	1.315e^-4	0.999	DOWNSTREAM Drl-2 INTERGENIC
3L	20692397	3L_20692397_SNP [dm3] 3L_20699297_SNP [dm6]	A	G	1.320e^-4	0.999	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2081776	2L_2081776_SNP [dm3] 2L_2081776_SNP [dm6]	G	C	1.326e^-4	0.999	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_inv
3R	8809229	3R_8809229_SNP [dm3] 3R_12983507_SNP [dm6]	T	C	1.328e^-4	0.999	INTRON Paip2	TF binding site mE1_TFBS_cad
X	16335034	X_16335034_SNP [dm3] X_16441001_SNP [dm6]	G	C	1.338e^-4	0.999	UPSTREAM rngo INTRON CG9947	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	16335256	X_16335256_SNP [dm3] X_16441223_SNP [dm6]	G	A	1.338e^-4	0.999	UTR_5_PRIME CG9947 UPSTREAM rngo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	16335538	X_16335538_SNP [dm3] X_16441505_SNP [dm6]	T	C	1.338e^-4	0.999	UTR_5_PRIME rngo UPSTREAM rngo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	16335778	X_16335778_INS [dm3] X_16441745_INS [dm6]	A	AACACA	1.338e^-4	0.999	UTR_5_PRIME rngo UPSTREAM CG9947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	16335801	X_16335801_SNP [dm3] X_16441768_SNP [dm6]	C	T	1.338e^-4	0.999	UTR_5_PRIME rngo UPSTREAM CG9947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	16336474	X_16336474_SNP [dm3] X_16442441_SNP [dm6]	G	A	1.338e^-4	0.999	INTRON rngo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	20519561	3L_20519561_SNP [dm3] 3L_20526461_SNP [dm6]	T	C	1.357e^-4	0.999	UPSTREAM CG4858 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	10881797	3L_10881797_SNP [dm3] 3L_10888697_SNP [dm6]	A	T	1.365e^-4	0.999	INTERGENIC
3L	2080903	3L_2080903_SNP [dm3] 3L_2080903_SNP [dm6]	G	T	1.385e^-4	0.999	SYNONYMOUS_CODING sls INTRON sls
2R	9473588	2R_9473588_DEL [dm3] 2R_13586083_DEL [dm6]	ATAA	A	1.392e^-4	0.999	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_zfh1
3L	2469405	3L_2469405_SNP [dm3] 3L_2469405_SNP [dm6]	A	G	1.425e^-4	0.999	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6353642	2L_6353642_SNP [dm3] 2L_6353642_SNP [dm6]	C	T	1.432e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6353657	2L_6353657_SNP [dm3] 2L_6353657_SNP [dm6]	C	A	1.432e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	1.437e^-4	0.999	INTRON Rab40
3L	20569840	3L_20569840_SNP [dm3] 3L_20576740_SNP [dm6]	G	A	1.454e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19537618	2L_19537618_SNP [dm3] 2L_19537618_SNP [dm6]	T	G	1.459e^-4	0.999	UPSTREAM CR45455 & 1 other DOWNSTREAM CG33116 INTERGENIC
2L	19537621	2L_19537621_INS [dm3] 2L_19537621_INS [dm6]	C	ACCT	1.459e^-4	0.999	UPSTREAM CR45455 & 1 other DOWNSTREAM CG33116 INTERGENIC
2R	10210272	2R_10210272_SNP [dm3] 2R_14322767_SNP [dm6]	G	C	1.464e^-4	0.999	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18593427	2R_18593427_DEL [dm3] 2R_22705922_DEL [dm6]	CAGAA	TT	1.470e^-4	0.999	UTR_3_PRIME Obp58c DOWNSTREAM Obp58b	TF binding site mE1_TFBS_inv
3L	14390242	3L_14390242_SNP [dm3] 3L_14397142_SNP [dm6]	G	A	1.470e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19921181	2R_19921181_SNP [dm3] 2R_24033658_SNP [dm6]	C	T	1.480e^-4	0.999	UPSTREAM MAN1 INTRON Chi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	19563281	X_19563281_SNP [dm3] X_19669248_SNP [dm6]	G	A	1.485e^-4	0.999	UPSTREAM Zw INTRON Zw
2L	19537715	2L_19537715_SNP [dm3] 2L_19537715_SNP [dm6]	C	A	1.486e^-4	0.999	UPSTREAM CR45455 & 1 other DOWNSTREAM CG33116 INTERGENIC
X	16335771	X_16335771_SNP [dm3] X_16441738_SNP [dm6]	G	T	1.486e^-4	0.999	UTR_5_PRIME rngo UPSTREAM CG9947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	16109451	3R_16109451_SNP [dm3] 3R_20283729_SNP [dm6]	C	A	1.513e^-4	0.999	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16924215	3L_16924215_SNP [dm3] 3L_16931115_SNP [dm6]	A	T	1.521e^-4	0.999	DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_HSA
3R	8821336	3R_8821336_SNP [dm3] 3R_12995614_SNP [dm6]	A	C	1.531e^-4	0.999	UPSTREAM CG7488 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	16810081	2R_16810081_SNP [dm3] 2R_20922576_SNP [dm6]	A	G	1.568e^-4	0.999	NON_SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo
2R	16418712	2R_16418712_SNP [dm3] 2R_20531207_SNP [dm6]	C	A	1.598e^-4	0.999	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17277115	X_17277115_SNP [dm3] X_17383082_SNP [dm6]	T	G	1.598e^-4	0.999	INTERGENIC
3L	4769487	3L_4769487_SNP [dm3] 3L_4769487_SNP [dm6]	G	T	1.599e^-4	0.999	INTRON RhoGEF64C
2L	6358970	2L_6358970_SNP [dm3] 2L_6358970_SNP [dm6]	G	A	1.599e^-4	0.999	UPSTREAM CG9500 EXON CR44777
2R	12118588	2R_12118588_SNP [dm3] 2R_16231083_SNP [dm6]	C	A	1.619e^-4	0.999	SYNONYMOUS_CODING CG15701 UPSTREAM CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1817133	3L_1817133_SNP [dm3] 3L_1817133_SNP [dm6]	G	C	1.635e^-4	0.999	INTRON GV1
3L	1817134	3L_1817134_DEL [dm3] 3L_1817134_DEL [dm6]	ATCTCATCTGGCATTTCT...	A	1.635e^-4	0.999	INTRON GV1
3L	1817153	3L_1817153_SNP [dm3] 3L_1817153_SNP [dm6]	G	A	1.635e^-4	0.999	INTRON GV1
3R	13334294	3R_13334294_SNP [dm3] 3R_17508572_SNP [dm6]	A	T	1.640e^-4	0.999	INTERGENIC
2L	2066202	2L_2066202_SNP [dm3] 2L_2066202_SNP [dm6]	A	G	1.653e^-4	0.999	INTRON dpr3
2L	2066206	2L_2066206_SNP [dm3] 2L_2066206_SNP [dm6]	C	T	1.653e^-4	0.999	INTRON dpr3
3R	9979469	3R_9979469_SNP [dm3] 3R_14153747_SNP [dm6]	A	C	1.662e^-4	0.999	NON_SYNONYMOUS_CODING CG9722 DOWNSTREAM CR44215 & 1 other
3R	13983205	3R_13983205_SNP [dm3] 3R_18157483_SNP [dm6]	G	A	1.666e^-4	0.999	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12092229	3L_12092229_SNP [dm3] 3L_12099129_SNP [dm6]	T	C	1.699e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092239	3L_12092239_SNP [dm3] 3L_12099139_SNP [dm6]	A	T	1.699e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14977683	3R_14977683_SNP [dm3] 3R_19151961_SNP [dm6]	G	C	1.700e^-4	0.999	INTRON CG5835
X	16926414	X_16926414_SNP [dm3] X_17032381_SNP [dm6]	C	G	1.709e^-4	0.999	INTRON CG45002
2R	15973141	2R_15973141_SNP [dm3] 2R_20085636_SNP [dm6]	A	G	1.711e^-4	0.999	EXON CR44632
2R	18035988	2R_18035988_SNP [dm3] 2R_22148483_SNP [dm6]	G	T	1.713e^-4	0.999	INTRON a
2L	11819269	2L_11819269_SNP [dm3] 2L_11819269_SNP [dm6]	T	C	1.732e^-4	0.999	INTRON Pde1c
3L	19522149	3L_19522149_SNP [dm3] 3L_19529049_SNP [dm6]	A	G	1.745e^-4	0.999	INTERGENIC
2R	7959784	2R_7959784_SNP [dm3] 2R_12072279_SNP [dm6]	A	C	1.760e^-4	0.999	INTRON CG8888
2R	7959746	2R_7959746_SNP [dm3] 2R_12072241_SNP [dm6]	G	T	1.779e^-4	0.999	INTRON CG8888
3L	19409076	3L_19409076_SNP [dm3] 3L_19415976_SNP [dm6]	C	T	1.780e^-4	0.999	INTERGENIC
3L	14536778	3L_14536778_SNP [dm3] 3L_14543678_SNP [dm6]	C	T	1.790e^-4	0.999	INTRON CG9238
2R	13821878	2R_13821878_SNP [dm3] 2R_17934373_SNP [dm6]	G	A	1.791e^-4	0.999	INTERGENIC
2L	8635015	2L_8635015_SNP [dm3] 2L_8635015_SNP [dm6]	A	T	1.810e^-4	0.999	INTRON Sema-1a
2L	6353600	2L_6353600_SNP [dm3] 2L_6353600_SNP [dm6]	C	G	1.814e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6354062	2L_6354062_SNP [dm3] 2L_6354062_SNP [dm6]	G	A	1.814e^-4	0.999	SYNONYMOUS_CODING ppk7 UPSTREAM ppk14	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo
3L	6496300	3L_6496300_SNP [dm3] 3L_6503200_SNP [dm6]	G	A	1.819e^-4	0.999	INTRON sfl
3L	11542405	3L_11542405_SNP [dm3] 3L_11549305_SNP [dm6]	A	G	1.821e^-4	0.999	INTRON Mob2
2L	13803446	2L_13803446_SNP [dm3] 2L_13803446_SNP [dm6]	A	C	1.828e^-4	0.999	UPSTREAM CAH1 INTERGENIC
3R	21372934	3R_21372934_SNP [dm3] 3R_25547212_SNP [dm6]	C	T	1.830e^-4	0.999	INTRON msi
3R	9976844	3R_9976844_SNP [dm3] 3R_14151122_SNP [dm6]	G	A	1.837e^-4	0.999	SYNONYMOUS_CODING CG14355
3L	1682369	3L_1682369_SNP [dm3] 3L_1682369_SNP [dm6]	A	G	1.843e^-4	0.999	INTRON CG7991
3L	5974408	3L_5974408_SNP [dm3] 3L_5981308_SNP [dm6]	C	A	1.848e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	6492651	3L_6492651_SNP [dm3] 3L_6499551_SNP [dm6]	G	T	1.852e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	18485898	X_18485898_SNP [dm3] X_18591865_SNP [dm6]	G	A	1.858e^-4	0.999	INTERGENIC
2L	3812664	2L_3812664_SNP [dm3] 2L_3812664_SNP [dm6]	G	A	1.859e^-4	0.999	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	2392192	X_2392192_SNP [dm3] X_2498159_SNP [dm6]	A	G	1.861e^-4	0.999	INTRON trol
3L	1700581	3L_1700581_SNP [dm3] 3L_1700581_SNP [dm6]	C	T	1.865e^-4	0.999	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14208167	3R_14208167_SNP [dm3] 3R_18382445_SNP [dm6]	A	G	1.868e^-4	0.999	NON_SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
X	1061655	X_1061655_SNP [dm3] X_1167622_SNP [dm6]	A	C	1.868e^-4	0.999	INTERGENIC
3L	18300782	3L_18300782_SNP [dm3] 3L_18307682_SNP [dm6]	C	A	1.871e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4138299	2R_4138299_SNP [dm3] 2R_8250794_SNP [dm6]	A	G	1.879e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6151109	2L_6151109_SNP [dm3] 2L_6151109_SNP [dm6]	T	A	1.911e^-4	0.999	UPSTREAM Muc26B INTERGENIC
2L	10709000	2L_10709000_SNP [dm3] 2L_10709000_SNP [dm6]	C	G	1.912e^-4	0.999	UTR_5_PRIME Lip2
3R	10421783	3R_10421783_SNP [dm3] 3R_14596061_SNP [dm6]	G	T	1.913e^-4	0.999	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
2R	19654159	2R_19654159_SNP [dm3] 2R_23766636_SNP [dm6]	G	A	1.914e^-4	0.999	INTRON CG9850
3L	16685310	3L_16685310_SNP [dm3] 3L_16692210_SNP [dm6]	C	T	1.916e^-4	0.999	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
3L	2398296	3L_2398296_SNP [dm3] 3L_2398296_SNP [dm6]	G	A	1.917e^-4	0.999	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	6320752	2L_6320752_SNP [dm3] 2L_6320752_SNP [dm6]	A	G	1.922e^-4	0.999	INTRON Ddr
3L	1808206	3L_1808206_SNP [dm3] 3L_1808206_SNP [dm6]	T	G	1.932e^-4	0.999	DOWNSTREAM CR45687 INTERGENIC
2L	6357717	2L_6357717_SNP [dm3] 2L_6357717_SNP [dm6]	T	G	1.932e^-4	0.999	SYNONYMOUS_CODING CG9500 DOWNSTREAM CR44777	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	21099603	2R_21099603_SNP [dm3] 2R_25212080_SNP [dm6]	T	A	1.933e^-4	0.999	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	2091548	2L_2091548_SNP [dm3] 2L_2091548_SNP [dm6]	C	T	1.936e^-4	0.999	INTRON dpr3
2R	7060915	2R_7060915_SNP [dm3] 2R_11173410_SNP [dm6]	T	A	1.941e^-4	0.999	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	11294786	3L_11294786_SNP [dm3] 3L_11301686_SNP [dm6]	C	G	1.943e^-4	0.999	INTERGENIC
3L	5304159	3L_5304159_SNP [dm3] 3L_5311059_SNP [dm6]	A	C	1.947e^-4	0.999	INTERGENIC
2R	12980102	2R_12980102_SNP [dm3] 2R_17092597_SNP [dm6]	G	C	1.952e^-4	0.999	SYNONYMOUS_CODING CG6984 UPSTREAM Sply DOWNSTREAM GstS1
2L	6711851	2L_6711851_SNP [dm3] 2L_6711851_SNP [dm6]	T	C	1.953e^-4	0.999	UTR_3_PRIME AkhR INTRON AkhR
3L	6335983	3L_6335983_INS [dm3] 3L_6342883_INS [dm6]	C	CAC	1.954e^-4	0.999	INTRON CG13300
2R	8665331	2R_8665331_SNP [dm3] 2R_12777826_SNP [dm6]	A	G	1.966e^-4	0.999	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10648659	3L_10648659_DEL [dm3] 3L_10655559_DEL [dm6]	ACC	A	1.966e^-4	0.999	INTRON CG32066
3R	10162413	3R_10162413_SNP [dm3] 3R_14336691_SNP [dm6]	G	A	1.970e^-4	0.999	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	5961149	3R_5961149_SNP [dm3] 3R_10135427_SNP [dm6]	C	A	1.970e^-4	0.999	UPSTREAM tws INTRON tws	TF binding site BDTNP1_TFBS_da
3R	14529590	3R_14529590_SNP [dm3] 3R_18703868_SNP [dm6]	A	T	1.971e^-4	0.999	INTERGENIC
2L	9621118	2L_9621118_SNP [dm3] 2L_9621118_SNP [dm6]	G	T	1.973e^-4	0.999	INTRON GlcAT-S
2R	19654305	2R_19654305_SNP [dm3] 2R_23766782_SNP [dm6]	A	G	1.984e^-4	0.999	INTRON CG9850
3L	19404493	3L_19404493_SNP [dm3] 3L_19411393_SNP [dm6]	G	T	1.986e^-4	0.999	INTRON CG32206
3L	6989182	3L_6989182_SNP [dm3] 3L_6996082_SNP [dm6]	T	A	1.986e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
X	2993007	X_2993007_SNP [dm3] X_3098974_SNP [dm6]	C	T	2.006e^-4	0.999	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13943370	3R_13943370_SNP [dm3] 3R_18117648_SNP [dm6]	A	T	2.007e^-4	0.999	INTRON sr
3L	10815614	3L_10815614_SNP [dm3] 3L_10822514_SNP [dm6]	A	T	2.009e^-4	0.999	INTERGENIC
2R	7695811	2R_7695811_SNP [dm3] 2R_11808306_SNP [dm6]	T	G	2.010e^-4	0.999	INTRON ths
2L	1998935	2L_1998935_SNP [dm3] 2L_1998935_SNP [dm6]	A	G	2.014e^-4	0.999	INTRON CG33543
2R	16809849	2R_16809849_SNP [dm3] 2R_20922344_SNP [dm6]	T	A	2.017e^-4	0.999	INTRON Rx	TF binding site mE1_TFBS_chinmo
3R	14830933	3R_14830933_SNP [dm3] 3R_19005211_SNP [dm6]	T	G	2.026e^-4	0.999	INTRON gukh
3L	2290533	3L_2290533_SNP [dm3] 3L_2290533_SNP [dm6]	A	T	2.037e^-4	0.999	INTRON MsR2
3L	14390174	3L_14390174_SNP [dm3] 3L_14397074_SNP [dm6]	G	T	2.038e^-4	0.999	INTERGENIC
3R	15453695	3R_15453695_DEL [dm3] 3R_19627973_DEL [dm6]	AAAGTCATT	A	2.044e^-4	0.999	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	11295779	2R_11295779_SNP [dm3] 2R_15408274_SNP [dm6]	G	T	2.055e^-4	0.999	UPSTREAM Mtk INTRON CG43729
3L	13670976	3L_13670976_SNP [dm3] 3L_13677876_SNP [dm6]	T	A	2.062e^-4	0.999	INTRON bru-3
3R	13419610	3R_13419610_SNP [dm3] 3R_17593888_SNP [dm6]	G	A	2.082e^-4	0.999	UPSTREAM CG7587 INTERGENIC
3L	8725160	3L_8725160_SNP [dm3] 3L_8732060_SNP [dm6]	A	C	2.088e^-4	0.999	NON_SYNONYMOUS_CODING Cp16 DOWNSTREAM Prm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3133838	2L_3133838_SNP [dm3] 2L_3133838_SNP [dm6]	G	T	2.092e^-4	0.999	INTRON toc
2L	5726005	2L_5726005_SNP [dm3] 2L_5726005_SNP [dm6]	T	A	2.119e^-4	0.999	DOWNSTREAM CG14006 INTRON CG11030
3R	16572626	3R_16572626_SNP [dm3] 3R_20746904_SNP [dm6]	G	A	2.120e^-4	0.999	SYNONYMOUS_CODING CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7831733	3R_7831733_SNP [dm3] 3R_12006011_SNP [dm6]	T	A	2.121e^-4	0.999	UPSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13746120	2R_13746120_SNP [dm3] 2R_17858615_SNP [dm6]	T	A	2.140e^-4	0.999	INTRON olf186-F
2R	10210277	2R_10210277_SNP [dm3] 2R_14322772_SNP [dm6]	T	A	2.140e^-4	0.999	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16148833	3L_16148833_SNP [dm3] 3L_16155733_SNP [dm6]	G	A	2.144e^-4	0.999	INTRON CG5151
X	4274644	X_4274644_SNP [dm3] X_4380611_SNP [dm6]	G	T	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274646	X_4274646_SNP [dm3] X_4380613_SNP [dm6]	A	C	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274653	X_4274653_SNP [dm3] X_4380620_SNP [dm6]	C	A	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274654	X_4274654_SNP [dm3] X_4380621_SNP [dm6]	T	C	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274657	X_4274657_SNP [dm3] X_4380624_SNP [dm6]	T	A	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274659	X_4274659_SNP [dm3] X_4380626_SNP [dm6]	T	G	2.146e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25662004	3R_25662004_SNP [dm3] 3R_29836282_SNP [dm6]	C	A	2.152e^-4	0.999	UTR_5_PRIME CG42592 UPSTREAM CG15510 INTRON CG15510
2L	6357612	2L_6357612_SNP [dm3] 2L_6357612_SNP [dm6]	G	A	2.152e^-4	0.999	SYNONYMOUS_CODING CG9500 DOWNSTREAM CR44777	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	12682324	3R_12682324_SNP [dm3] 3R_16856602_SNP [dm6]	C	G	2.161e^-4	0.999	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2080795	3L_2080795_SNP [dm3] 3L_2080795_SNP [dm6]	C	A	2.166e^-4	0.999	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2R	14618951	2R_14618951_SNP [dm3] 2R_18731446_SNP [dm6]	A	C	2.169e^-4	0.999	INTRON Hs3st-A
2R	18220321	2R_18220321_SNP [dm3] 2R_22332816_SNP [dm6]	A	G	2.170e^-4	0.999	UPSTREAM T3dh & 1 other DOWNSTREAM Liprin-gamma & 1 other INTERGENIC
3L	2408521	3L_2408521_SNP [dm3] 3L_2408521_SNP [dm6]	C	A	2.179e^-4	0.999	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13567737	3R_13567737_SNP [dm3] 3R_17742015_SNP [dm6]	T	A	2.185e^-4	0.999	INTRON TyrRII
3L	2408517	3L_2408517_SNP [dm3] 3L_2408517_SNP [dm6]	C	T	2.188e^-4	0.999	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9871710	3R_9871710_SNP [dm3] 3R_14045988_SNP [dm6]	C	T	2.191e^-4	0.999	INTERGENIC
3R	9871739	3R_9871739_SNP [dm3] 3R_14046017_SNP [dm6]	A	T	2.191e^-4	0.999	INTERGENIC
2R	7043365	2R_7043365_SNP [dm3] 2R_11155860_SNP [dm6]	A	T	2.206e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
3L	13186949	3L_13186949_SNP [dm3] 3L_13193849_SNP [dm6]	C	G	2.207e^-4	0.999	INTERGENIC
2L	6454031	2L_6454031_SNP [dm3] 2L_6454031_SNP [dm6]	T	C	2.222e^-4	0.999	INTRON retm	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6454042	2L_6454042_SNP [dm3] 2L_6454042_SNP [dm6]	T	G	2.222e^-4	0.999	INTRON retm	TF binding site mE1_TFBS_zfh1
3R	14523980	3R_14523980_SNP [dm3] 3R_18698258_SNP [dm6]	C	G	2.223e^-4	0.999	INTERGENIC
3R	14523982	3R_14523982_SNP [dm3] 3R_18698260_SNP [dm6]	G	A	2.223e^-4	0.999	INTERGENIC
2R	10618349	2R_10618349_SNP [dm3] 2R_14730844_SNP [dm6]	G	A	2.226e^-4	0.999	INTERGENIC
3L	14443317	3L_14443317_DEL [dm3] 3L_14450217_DEL [dm6]	TAATT	T	2.245e^-4	0.999	INTRON bbg
2L	6353633	2L_6353633_SNP [dm3] 2L_6353633_SNP [dm6]	C	A	2.275e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11669872	2L_11669872_SNP [dm3] 2L_11669872_SNP [dm6]	T	G	2.291e^-4	0.999	INTERGENIC
X	21303365	X_21303365_SNP [dm3] X_21432338_SNP [dm6]	A	C	2.299e^-4	0.999	INTRON CG42343
X	19509461	X_19509461_SNP [dm3] X_19615428_SNP [dm6]	A	T	2.303e^-4	0.999	UTR_3_PRIME Tyler & 1 other UPSTREAM CG14210	TF binding site BDTNP1_TFBS_twi
2R	10210270	2R_10210270_SNP [dm3] 2R_14322765_SNP [dm6]	G	C	2.306e^-4	0.999	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1807762	3L_1807762_SNP [dm3] 3L_1807762_SNP [dm6]	C	T	2.313e^-4	0.999	UPSTREAM CR45686 DOWNSTREAM CG42676 EXON CR45687
3L	6496570	3L_6496570_SNP [dm3] 3L_6503470_SNP [dm6]	T	C	2.316e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	1032927	3L_1032927_SNP [dm3] 3L_1032927_SNP [dm6]	T	C	2.325e^-4	0.999	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16156405	3L_16156405_SNP [dm3] 3L_16163305_SNP [dm6]	G	A	2.328e^-4	0.999	INTRON CG5151
3L	12101683	3L_12101683_SNP [dm3] 3L_12108583_SNP [dm6]	G	A	2.328e^-4	0.999	INTERGENIC
2R	9358084	2R_9358084_SNP [dm3] 2R_13470579_SNP [dm6]	A	C	2.331e^-4	0.999	INTRON arr
3R	22695109	3R_22695109_SNP [dm3] 3R_26869387_SNP [dm6]	A	G	2.343e^-4	0.999	SYNONYMOUS_CODING BM-40-SPARC DOWNSTREAM His2Av	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13293593	2R_13293593_SNP [dm3] 2R_17406088_SNP [dm6]	G	T	2.345e^-4	0.999	NON_SYNONYMOUS_CODING CG6568 DOWNSTREAM Sip1	TF binding site mE1_TFBS_sens
X	3262787	X_3262787_SNP [dm3] X_3368754_SNP [dm6]	G	A	2.347e^-4	0.999	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13087495	2L_13087495_SNP [dm3] 2L_13087495_SNP [dm6]	A	C	2.351e^-4	0.999	INTERGENIC
2R	11375308	2R_11375308_SNP [dm3] 2R_15487803_SNP [dm6]	G	A	2.353e^-4	0.999	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11819266	2L_11819266_SNP [dm3] 2L_11819266_SNP [dm6]	T	G	2.359e^-4	0.999	INTRON Pde1c
3L	11553440	3L_11553440_SNP [dm3] 3L_11560340_SNP [dm6]	T	A	2.365e^-4	0.999	INTRON Mob2
2L	4445771	2L_4445771_SNP [dm3] 2L_4445771_SNP [dm6]	T	C	2.366e^-4	0.999	SYNONYMOUS_CODING Elp3 DOWNSTREAM MFS18	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10547399	2R_10547399_SNP [dm3] 2R_14659894_SNP [dm6]	C	T	2.375e^-4	0.999	INTERGENIC
3L	11407821	3L_11407821_SNP [dm3] 3L_11414721_SNP [dm6]	A	G	2.401e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20492803	3L_20492803_SNP [dm3] 3L_20499703_SNP [dm6]	A	G	2.423e^-4	0.999	UPSTREAM CG18281 INTRON CG32425
2R	8876133	2R_8876133_SNP [dm3] 2R_12988628_SNP [dm6]	A	T	2.432e^-4	0.999	INTERGENIC
2R	8876136	2R_8876136_SNP [dm3] 2R_12988631_SNP [dm6]	A	G	2.432e^-4	0.999	INTERGENIC
2R	16809914	2R_16809914_SNP [dm3] 2R_20922409_SNP [dm6]	A	T	2.436e^-4	0.999	INTRON Rx	TF binding site mE1_TFBS_chinmo
X	18953015	X_18953015_SNP [dm3] X_19058982_SNP [dm6]	T	C	2.441e^-4	0.999	INTRON CG14190
X	4442039	X_4442039_SNP [dm3] X_4548006_SNP [dm6]	G	A	2.462e^-4	0.999	SYNONYMOUS_CODING Usf INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	19101499	2R_19101499_DEL [dm3] 2R_23213976_DEL [dm6]	TTTCAAT	T	2.477e^-4	0.999	INTERGENIC
3L	10648665	3L_10648665_SNP [dm3] 3L_10655565_SNP [dm6]	A	T	2.482e^-4	0.999	INTRON CG32066
2L	6352525	2L_6352525_SNP [dm3] 2L_6352525_SNP [dm6]	A	G	2.483e^-4	0.999	SYNONYMOUS_CODING ppk7
3L	7221219	3L_7221219_SNP [dm3] 3L_7228119_SNP [dm6]	G	C	2.483e^-4	0.999	INTERGENIC
3L	11171483	3L_11171483_SNP [dm3] 3L_11178383_SNP [dm6]	T	A	2.486e^-4	0.999	UTR_3_PRIME GlcAT-P
3L	608671	3L_608671_SNP [dm3] 3L_608671_SNP [dm6]	T	G	2.509e^-4	0.999	DOWNSTREAM CR44513 INTERGENIC
3L	608672	3L_608672_SNP [dm3] 3L_608672_SNP [dm6]	G	A	2.509e^-4	0.999	DOWNSTREAM CR44513 INTERGENIC
X	4274508	X_4274508_SNP [dm3] X_4380475_SNP [dm6]	G	A	2.520e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274533	X_4274533_SNP [dm3] X_4380500_SNP [dm6]	C	T	2.520e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6353383	2L_6353383_SNP [dm3] 2L_6353383_SNP [dm6]	G	C	2.544e^-4	0.999	NON_SYNONYMOUS_CODING ppk7	TF binding site mE1_TFBS_cad
3R	14700905	3R_14700905_SNP [dm3] 3R_18875183_SNP [dm6]	A	T	2.546e^-4	0.999	UPSTREAM CG14298 INTERGENIC
X	4917978	X_4917978_SNP [dm3] X_5023945_SNP [dm6]	C	A	2.561e^-4	0.999	INTRON CR44833	regulatory region REDfly_CRMs
2R	21098765	2R_21098765_SNP [dm3] 2R_25211242_SNP [dm6]	T	C	2.564e^-4	0.999	INTRON CG9380	regulatory region FlyBase transposable element FlyBase
3L	20521747	3L_20521747_SNP [dm3] 3L_20528647_SNP [dm6]	C	T	2.566e^-4	0.999	SYNONYMOUS_CODING Rcd2 DOWNSTREAM CG4858
3L	14443250	3L_14443250_SNP [dm3] 3L_14450150_SNP [dm6]	A	C	2.579e^-4	0.999	INTRON bbg
3R	18274351	3R_18274351_SNP [dm3] 3R_22448629_SNP [dm6]	A	T	2.584e^-4	0.999	INTRON CG34376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13475485	3R_13475485_SNP [dm3] 3R_17649763_SNP [dm6]	C	T	2.584e^-4	0.999	INTRON CG14322
2L	6735754	2L_6735754_SNP [dm3] 2L_6735754_SNP [dm6]	T	C	2.586e^-4	0.999	DOWNSTREAM TTLL3A INTRON TTLL3B	TF binding site BDTNP1_TFBS_twi
3L	6987832	3L_6987832_SNP [dm3] 3L_6994732_SNP [dm6]	A	C	2.588e^-4	0.999	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18385472	2R_18385472_SNP [dm3] 2R_22497967_SNP [dm6]	T	G	2.606e^-4	0.999	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21303464	X_21303464_SNP [dm3] X_21432437_SNP [dm6]	A	T	2.606e^-4	0.999	INTRON CG42343
3L	9368439	3L_9368439_SNP [dm3] 3L_9375339_SNP [dm6]	C	A	2.621e^-4	0.999	UPSTREAM CG4461 DOWNSTREAM Hsp22 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24090038	3R_24090038_SNP [dm3] 3R_28264316_SNP [dm6]	G	A	2.631e^-4	0.999	NON_SYNONYMOUS_CODING CG43124 UPSTREAM CG43125
3L	5985481	3L_5985481_SNP [dm3] 3L_5992381_SNP [dm6]	T	A	2.635e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1616015	3L_1616015_SNP [dm3] 3L_1616015_SNP [dm6]	T	G	2.635e^-4	0.999	UPSTREAM CG12105 INTRON CG33791 & 1 other
2R	7695803	2R_7695803_INS [dm3] 2R_11808298_INS [dm6]	A	ATGGCCAAGGCCCGCTGCGG...	2.636e^-4	0.999	INTRON ths
2R	7695808	2R_7695808_SNP [dm3] 2R_11808303_SNP [dm6]	A	T	2.636e^-4	0.999	INTRON ths
2L	5277650	2L_5277650_SNP [dm3] 2L_5277650_SNP [dm6]	T	A	2.642e^-4	0.999	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11135149	2R_11135149_SNP [dm3] 2R_15247644_SNP [dm6]	A	G	2.643e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16616648	2R_16616648_DEL [dm3] 2R_20729143_DEL [dm6]	GT	G	2.646e^-4	0.999	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8699751	2R_8699751_SNP [dm3] 2R_12812246_SNP [dm6]	T	C	2.655e^-4	0.999	INTERGENIC
3L	15051901	3L_15051901_SNP [dm3] 3L_15058801_SNP [dm6]	A	G	2.656e^-4	0.999	INTRON Sytbeta
2R	10317512	2R_10317512_SNP [dm3] 2R_14430007_SNP [dm6]	C	A	2.666e^-4	0.999	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11131258	2R_11131258_SNP [dm3] 2R_15243753_SNP [dm6]	A	G	2.689e^-4	0.999	INTERGENIC
3L	6492699	3L_6492699_SNP [dm3] 3L_6499599_SNP [dm6]	T	C	2.689e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	10703276	2L_10703276_SNP [dm3] 2L_10703276_SNP [dm6]	C	A	2.705e^-4	0.999	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20521762	3L_20521762_SNP [dm3] 3L_20528662_SNP [dm6]	C	T	2.706e^-4	0.999	SYNONYMOUS_CODING Rcd2 DOWNSTREAM CG4858
2R	13367178	2R_13367178_SNP [dm3] 2R_17479673_SNP [dm6]	A	G	2.710e^-4	0.999	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12932839	X_12932839_SNP [dm3] X_13038806_SNP [dm6]	A	C	2.721e^-4	0.999	INTRON rad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4448426	X_4448426_SNP [dm3] X_4554393_SNP [dm6]	C	A	2.722e^-4	0.999	UTR_5_PRIME CG11444 UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18212144	2R_18212144_SNP [dm3] 2R_22324639_SNP [dm6]	C	G	2.730e^-4	0.999	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11976793	3R_11976793_SNP [dm3] 3R_16151071_SNP [dm6]	T	C	2.730e^-4	0.999	INTRON Fer2	TF binding site BDTNP1_TFBS_dl
X	1082516	X_1082516_INS [dm3] X_1188483_INS [dm6]	T	TAAAAAAATCGCTGGGACAG...	2.733e^-4	0.999
2R	11135896	2R_11135896_SNP [dm3] 2R_15248391_SNP [dm6]	C	T	2.758e^-4	0.999	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11135946	2R_11135946_SNP [dm3] 2R_15248441_SNP [dm6]	C	T	2.758e^-4	0.999	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13089592	3L_13089592_SNP [dm3] 3L_13096492_SNP [dm6]	A	T	2.767e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2742443	2L_2742443_SNP [dm3] 2L_2742443_SNP [dm6]	C	T	2.784e^-4	0.999	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13135956	2L_13135956_SNP [dm3] 2L_13135956_SNP [dm6]	A	T	2.786e^-4	0.999	INTERGENIC
2R	11132660	2R_11132660_SNP [dm3] 2R_15245155_SNP [dm6]	A	G	2.793e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	13343143	3R_13343143_SNP [dm3] 3R_17517421_SNP [dm6]	T	C	2.800e^-4	0.999	DOWNSTREAM CR44349 INTERGENIC
2L	10867312	2L_10867312_SNP [dm3] 2L_10867312_SNP [dm6]	C	G	2.803e^-4	0.999	INTERGENIC
2R	7043385	2R_7043385_SNP [dm3] 2R_11155880_SNP [dm6]	A	C	2.815e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
3L	605232	3L_605232_SNP [dm3] 3L_605232_SNP [dm6]	G	A	2.818e^-4	0.999	SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	2.824e^-4	0.999	INTRON Lip2
3L	11553441	3L_11553441_SNP [dm3] 3L_11560341_SNP [dm6]	C	A	2.827e^-4	0.999	INTRON Mob2
2R	7695581	2R_7695581_SNP [dm3] 2R_11808076_SNP [dm6]	C	T	2.834e^-4	0.999	INTRON ths
2L	6353042	2L_6353042_SNP [dm3] 2L_6353042_SNP [dm6]	A	C	2.852e^-4	0.999	SPLICE_SITE_REGION ppk7 INTRON ppk7	TF binding site mE1_TFBS_cad
2L	6353187	2L_6353187_SNP [dm3] 2L_6353187_SNP [dm6]	G	A	2.852e^-4	0.999	SYNONYMOUS_CODING ppk7	TF binding site mE1_TFBS_cad
2R	12730798	2R_12730798_SNP [dm3] 2R_16843293_SNP [dm6]	C	A	2.866e^-4	0.999	DOWNSTREAM Ugt37c1 INTERGENIC
3R	12216190	3R_12216190_SNP [dm3] 3R_16390468_SNP [dm6]	G	C	2.867e^-4	0.999	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7695810	2R_7695810_SNP [dm3] 2R_11808305_SNP [dm6]	A	T	2.873e^-4	0.999	INTRON ths
X	14711307	X_14711307_SNP [dm3] X_14817274_SNP [dm6]	G	T	2.875e^-4	0.999	INTRON rut
2R	12690053	2R_12690053_SNP [dm3] 2R_16802548_SNP [dm6]	T	G	2.876e^-4	0.999	INTERGENIC
3L	11006149	3L_11006149_SNP [dm3] 3L_11013049_SNP [dm6]	G	A	2.878e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15529941	3R_15529941_SNP [dm3] 3R_19704219_SNP [dm6]	G	A	2.882e^-4	0.999	INTERGENIC
2L	10702686	2L_10702686_SNP [dm3] 2L_10702686_SNP [dm6]	C	T	2.886e^-4	0.999	SYNONYMOUS_CODING Lip2 UPSTREAM CG6415
X	15966710	X_15966710_SNP [dm3] X_16072677_SNP [dm6]	A	G	2.893e^-4	0.999	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3L	14445224	3L_14445224_SNP [dm3] 3L_14452124_SNP [dm6]	A	C	2.894e^-4	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18643799	3L_18643799_SNP [dm3] 3L_18650699_SNP [dm6]	C	A	2.896e^-4	0.999	INTRON MYPT-75D
3L	8331911	3L_8331911_SNP [dm3] 3L_8338811_SNP [dm6]	A	G	2.907e^-4	0.999	UPSTREAM Pex2 DOWNSTREAM Cpr66Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8332327	3L_8332327_SNP [dm3] 3L_8339227_SNP [dm6]	C	G	2.907e^-4	0.999	DOWNSTREAM Cpr66Cb INTRON Pex2	TF binding site BDTNP1_TFBS_dl
3R	19302815	3R_19302815_INS [dm3] 3R_23477093_INS [dm6]	AAA	GTTTCGT	2.918e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2801803	3R_2801803_SNP [dm3] 3R_6976081_SNP [dm6]	C	T	2.920e^-4	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	20931530	2R_20931530_SNP [dm3] 2R_25044007_SNP [dm6]	A	G	2.922e^-4	0.999	INTRON gsb-n
3L	7280497	3L_7280497_SNP [dm3] 3L_7287397_SNP [dm6]	T	C	2.927e^-4	0.999	INTRON unc-13-4A
3R	4297619	3R_4297619_SNP [dm3] 3R_8471897_SNP [dm6]	C	T	2.939e^-4	0.999	INTRON CG45263	TF binding site BDTNP1_TFBS_da
3L	20465013	3L_20465013_INS [dm3] 3L_20471913_INS [dm6]	C	CC	2.947e^-4	0.999	INTRON CG32428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7740941	3L_7740941_SNP [dm3] 3L_7747841_SNP [dm6]	T	C	2.947e^-4	0.999	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7719867	3L_7719867_SNP [dm3] 3L_7726767_SNP [dm6]	A	G	2.950e^-4	0.999	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25454273	3R_25454273_SNP [dm3] 3R_29628551_SNP [dm6]	A	G	2.950e^-4	0.999	INTERGENIC
3R	3144499	3R_3144499_SNP [dm3] 3R_7318777_SNP [dm6]	C	A	2.951e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7641997	3L_7641997_SNP [dm3] 3L_7648897_SNP [dm6]	C	A	2.956e^-4	0.999	INTERGENIC
2R	9473770	2R_9473770_INS [dm3] 2R_13586265_INS [dm6]	T	TT	2.961e^-4	0.999	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_zfh1
3L	5759096	3L_5759096_SNP [dm3] 3L_5765996_SNP [dm6]	C	T	2.974e^-4	0.999	UTR_5_PRIME Txl UPSTREAM unsRNA:CG10576-a & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	1088159	X_1088159_SNP [dm3] X_1194126_SNP [dm6]	T	C	2.992e^-4	0.999	INTRON CG11380
X	1088163	X_1088163_INS [dm3] X_1194130_INS [dm6]	T	TAACT	2.992e^-4	0.999	INTRON CG11380
2L	5256932	2L_5256932_SNP [dm3] 2L_5256932_SNP [dm6]	T	G	2.993e^-4	0.999	INTRON tkv	TF binding site mE1_TFBS_cad
X	15143626	X_15143626_SNP [dm3] X_15249593_SNP [dm6]	T	A	3.005e^-4	0.999	INTERGENIC
3R	25490043	3R_25490043_SNP [dm3] 3R_29664321_SNP [dm6]	G	A	3.011e^-4	0.999	UPSTREAM ppk21 INTERGENIC
X	5044952	X_5044952_SNP [dm3] X_5150919_SNP [dm6]	G	T	3.028e^-4	0.999	INTRON rg & 1 other
3L	19522004	3L_19522004_SNP [dm3] 3L_19528904_SNP [dm6]	A	G	3.032e^-4	0.999	INTERGENIC
2R	15213564	2R_15213564_SNP [dm3] 2R_19326059_SNP [dm6]	A	G	3.037e^-4	0.999	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	20592453	2R_20592453_SNP [dm3] 2R_24704930_SNP [dm6]	T	C	3.042e^-4	0.999	INTRON Mid1
2L	5443517	2L_5443517_INS [dm3] 2L_5443517_INS [dm6]	T	TC	3.043e^-4	0.999	INTERGENIC
3L	5234942	3L_5234942_SNP [dm3] 3L_5241842_SNP [dm6]	G	A	3.050e^-4	0.999	INTRON shep
2L	14157326	2L_14157326_SNP [dm3] 2L_14157326_SNP [dm6]	A	G	3.063e^-4	0.999	SYNONYMOUS_CODING CG17341
2L	14157415	2L_14157415_DEL [dm3] 2L_14157415_DEL [dm6]	CTGT	C	3.063e^-4	0.999	INTRON CG17341
3R	3144142	3R_3144142_SNP [dm3] 3R_7318420_SNP [dm6]	C	T	3.071e^-4	0.999	INTERGENIC
3L	15266111	3L_15266111_SNP [dm3] 3L_15273011_SNP [dm6]	G	T	3.077e^-4	0.999	INTERGENIC
3L	20499939	3L_20499939_SNP [dm3] 3L_20506839_SNP [dm6]	G	A	3.078e^-4	0.999	NON_SYNONYMOUS_CODING CG5078 INTRON CG32425	TF binding site mE1_TFBS_sens
2R	6682888	2R_6682888_INS [dm3] 2R_10795383_INS [dm6]	A	AAA	3.142e^-4	0.999	INTRON CG33144	transposable element FlyBase
2L	4213854	2L_4213854_SNP [dm3] 2L_4213854_SNP [dm6]	A	G	3.146e^-4	0.999	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10097368	2R_10097368_SNP [dm3] 2R_14209863_SNP [dm6]	A	T	3.151e^-4	0.999	INTRON Sox15	regulatory region REDfly_CRMs
3R	2819316	3R_2819316_SNP [dm3] 3R_6993594_SNP [dm6]	G	T	3.152e^-4	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1885869	3L_1885869_SNP [dm3] 3L_1885869_SNP [dm6]	A	G	3.156e^-4	0.999	UPSTREAM Aprt INTRON Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	8131215	X_8131215_SNP [dm3] X_8237182_SNP [dm6]	A	G	3.166e^-4	0.999	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9757903	2L_9757903_SNP [dm3] 2L_9757903_SNP [dm6]	G	T	3.171e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	6882034	2R_6882034_SNP [dm3] 2R_10994529_SNP [dm6]	C	G	3.177e^-4	0.999	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	13371019	3L_13371019_SNP [dm3] 3L_13377919_SNP [dm6]	G	A	3.177e^-4	0.999	UPSTREAM CG14111 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2408532	3L_2408532_SNP [dm3] 3L_2408532_SNP [dm6]	C	A	3.191e^-4	0.999	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13475498	3R_13475498_SNP [dm3] 3R_17649776_SNP [dm6]	G	A	3.194e^-4	0.999	INTRON CG14322
X	12217440	X_12217440_SNP [dm3] X_12323407_SNP [dm6]	G	C	3.195e^-4	0.999	INTRON Ten-a
2L	2066262	2L_2066262_SNP [dm3] 2L_2066262_SNP [dm6]	T	C	3.197e^-4	0.999	INTRON dpr3
2L	7265419	2L_7265419_SNP [dm3] 2L_7265419_SNP [dm6]	C	T	3.198e^-4	0.999	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4321830	2L_4321830_SNP [dm3] 2L_4321830_SNP [dm6]	G	A	3.199e^-4	0.999	UTR_3_PRIME tutl DOWNSTREAM tutl
3L	7716868	3L_7716868_SNP [dm3] 3L_7723768_SNP [dm6]	T	A	3.201e^-4	0.999	NON_SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11532996	2R_11532996_SNP [dm3] 2R_15645491_SNP [dm6]	T	G	3.207e^-4	0.999	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
3L	12101732	3L_12101732_SNP [dm3] 3L_12108632_SNP [dm6]	C	A	3.207e^-4	0.999	INTERGENIC
3L	12101733	3L_12101733_SNP [dm3] 3L_12108633_SNP [dm6]	A	T	3.207e^-4	0.999	INTERGENIC
3L	12101735	3L_12101735_SNP [dm3] 3L_12108635_SNP [dm6]	T	A	3.207e^-4	0.999	INTERGENIC
3L	13344046	3L_13344046_SNP [dm3] 3L_13350946_SNP [dm6]	C	T	3.224e^-4	0.999	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7442733	3L_7442733_SNP [dm3] 3L_7449633_SNP [dm6]	T	C	3.225e^-4	0.999	INTRON CG42458	TF binding site BDTNP1_TFBS_sna
2L	5282956	2L_5282956_SNP [dm3] 2L_5282956_SNP [dm6]	A	T	3.236e^-4	0.999	UTR_3_PRIME Bub1
2R	7043345	2R_7043345_SNP [dm3] 2R_11155840_SNP [dm6]	G	A	3.241e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	7043346	2R_7043346_SNP [dm3] 2R_11155841_SNP [dm6]	G	A	3.241e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	7043352	2R_7043352_SNP [dm3] 2R_11155847_SNP [dm6]	T	G	3.241e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	21094339	2R_21094339_SNP [dm3] 2R_25206816_SNP [dm6]	C	T	3.246e^-4	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8447667	3R_8447667_SNP [dm3] 3R_12621945_SNP [dm6]	C	A	3.259e^-4	0.999	INTERGENIC
2L	1999232	2L_1999232_SNP [dm3] 2L_1999232_SNP [dm6]	C	T	3.270e^-4	0.999	UPSTREAM CR43464 INTRON CG33543
3R	10689206	3R_10689206_SNP [dm3] 3R_14863484_SNP [dm6]	C	A	3.271e^-4	0.999	INTRON btsz
3L	2079036	3L_2079036_SNP [dm3] 3L_2079036_SNP [dm6]	G	T	3.282e^-4	0.999	NON_SYNONYMOUS_CODING sls SPLICE_SITE_REGION sls SYNONYMOUS_CODING sls
3L	14390559	3L_14390559_SNP [dm3] 3L_14397459_SNP [dm6]	A	G	3.297e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9419204	3R_9419204_SNP [dm3] 3R_13593482_SNP [dm6]	A	G	3.303e^-4	0.999	UPSTREAM CG14369 INTERGENIC
3L	20444008	3L_20444008_SNP [dm3] 3L_20450908_SNP [dm6]	G	A	3.312e^-4	0.999	SYNONYMOUS_CODING CG5199 DOWNSTREAM CG5910
3R	14525083	3R_14525083_SNP [dm3] 3R_18699361_SNP [dm6]	G	C	3.319e^-4	0.999	INTERGENIC
2L	6454012	2L_6454012_SNP [dm3] 2L_6454012_SNP [dm6]	A	C	3.320e^-4	0.999	INTRON retm	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	22896442	3L_22896442_SNP [dm3] 3L_22903342_SNP [dm6]	T	C	3.322e^-4	0.999	SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6496582	3L_6496582_SNP [dm3] 3L_6503482_SNP [dm6]	T	C	3.323e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6496589	3L_6496589_SNP [dm3] 3L_6503489_SNP [dm6]	A	G	3.323e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	15967220	2R_15967220_SNP [dm3] 2R_20079715_SNP [dm6]	T	A	3.324e^-4	0.999	INTERGENIC
3L	20521763	3L_20521763_SNP [dm3] 3L_20528663_SNP [dm6]	C	G	3.328e^-4	0.999	NON_SYNONYMOUS_CODING Rcd2 DOWNSTREAM CG4858
2R	11455147	2R_11455147_SNP [dm3] 2R_15567642_SNP [dm6]	C	T	3.347e^-4	0.999	SYNONYMOUS_CODING Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13685785	3L_13685785_SNP [dm3] 3L_13692685_SNP [dm6]	G	A	3.349e^-4	0.999	INTRON bru-3
3L	13685791	3L_13685791_SNP [dm3] 3L_13692691_SNP [dm6]	A	T	3.349e^-4	0.999	INTRON bru-3
3L	16149931	3L_16149931_SNP [dm3] 3L_16156831_SNP [dm6]	C	T	3.351e^-4	0.999	INTRON CG5151
3R	12929228	3R_12929228_SNP [dm3] 3R_17103506_SNP [dm6]	A	T	3.374e^-4	0.999	INTRON cher
2L	10705624	2L_10705624_SNP [dm3] 2L_10705624_SNP [dm6]	C	T	3.384e^-4	0.999	DOWNSTREAM CG6415 INTRON Lip2
2R	11132825	2R_11132825_SNP [dm3] 2R_15245320_SNP [dm6]	A	T	3.384e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
2R	11132591	2R_11132591_SNP [dm3] 2R_15245086_SNP [dm6]	C	T	3.386e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	13983367	3R_13983367_SNP [dm3] 3R_18157645_SNP [dm6]	T	A	3.395e^-4	0.999	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	9869173	3L_9869173_SNP [dm3] 3L_9876073_SNP [dm6]	C	G	3.400e^-4	0.999	EXON CR45406
2L	5402738	2L_5402738_SNP [dm3] 2L_5402738_SNP [dm6]	A	C	3.406e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	25129457	3R_25129457_SNP [dm3] 3R_29303735_SNP [dm6]	C	T	3.420e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	1078074	X_1078074_SNP [dm3] X_1184041_SNP [dm6]	C	T	3.436e^-4	0.999	UPSTREAM CG14626 DOWNSTREAM CG14627 INTERGENIC
X	22183738	X_22183738_SNP [dm3] X_22781902_SNP [dm6]	T	C	3.437e^-4	0.999	INTRON CR44997
X	21456195	X_21456195_SNP [dm3] X_21585168_SNP [dm6]	C	T	3.460e^-4	0.999	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3L	18643745	3L_18643745_SNP [dm3] 3L_18650645_SNP [dm6]	A	T	3.475e^-4	0.999	INTRON MYPT-75D
X	16336970	X_16336970_SNP [dm3] X_16442937_SNP [dm6]	A	G	3.488e^-4	0.999	INTRON rngo	TF binding site BDTNP1_TFBS_dl
X	18712705	X_18712705_SNP [dm3] X_18818672_SNP [dm6]	C	A	3.488e^-4	0.999	INTRON CG42450
3L	7642121	3L_7642121_SNP [dm3] 3L_7649021_SNP [dm6]	T	C	3.505e^-4	0.999	INTERGENIC
3L	12101766	3L_12101766_SNP [dm3] 3L_12108666_SNP [dm6]	G	A	3.515e^-4	0.999	INTERGENIC
3R	13946927	3R_13946927_DEL [dm3] 3R_18121205_DEL [dm6]	TGCTCAACAACTT...	T	3.518e^-4	0.999	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13289550	2R_13289550_SNP [dm3] 2R_17402045_SNP [dm6]	A	C	3.535e^-4	0.999	INTRON Sip1
2R	7043370	2R_7043370_SNP [dm3] 2R_11155865_SNP [dm6]	C	A	3.536e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	19659697	2R_19659697_INS [dm3] 2R_23772174_INS [dm6]	T	TGTTTTTGTGC...	3.546e^-4	0.999	INTRON CG9850
2R	10426829	2R_10426829_SNP [dm3] 2R_14539324_SNP [dm6]	C	G	3.556e^-4	0.999	INTRON ttv
2L	11669881	2L_11669881_SNP [dm3] 2L_11669881_SNP [dm6]	A	T	3.556e^-4	0.999	INTERGENIC
3L	14390530	3L_14390530_SNP [dm3] 3L_14397430_SNP [dm6]	A	C	3.561e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14390612	3L_14390612_SNP [dm3] 3L_14397512_SNP [dm6]	T	A	3.561e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5277617	2L_5277617_SNP [dm3] 2L_5277617_SNP [dm6]	T	C	3.562e^-4	0.999	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8835725	2L_8835725_SNP [dm3] 2L_8835725_SNP [dm6]	C	T	3.572e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	22297107	X_22297107_SNP [dm3] X_22895271_SNP [dm6]	G	C	3.575e^-4	0.999	INTERGENIC
X	10818130	X_10818130_SNP [dm3] X_10924097_SNP [dm6]	A	T	3.575e^-4	0.999	DOWNSTREAM CG43901 INTRON v
2L	4808578	2L_4808578_SNP [dm3] 2L_4808578_SNP [dm6]	G	T	3.588e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10546877	2R_10546877_SNP [dm3] 2R_14659372_SNP [dm6]	G	A	3.593e^-4	0.999	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
3L	13435512	3L_13435512_SNP [dm3] 3L_13442412_SNP [dm6]	C	T	3.603e^-4	0.999	UTR_3_PRIME CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	18962742	3L_18962742_SNP [dm3] 3L_18969642_SNP [dm6]	C	G	3.611e^-4	0.999	INTERGENIC
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	3.611e^-4	0.999	INTRON Rab40
3L	1382079	3L_1382079_SNP [dm3] 3L_1382079_SNP [dm6]	T	A	3.627e^-4	0.999	INTRON Ptp61F & 1 other
2L	14980746	2L_14980746_SNP [dm3] 2L_14980746_SNP [dm6]	G	T	3.646e^-4	0.999	INTRON mol
X	10098490	X_10098490_SNP [dm3] X_10204457_SNP [dm6]	T	C	3.651e^-4	0.999	DOWNSTREAM CG15309 INTRON CR44894 EXON CR32690
3L	1374379	3L_1374379_SNP [dm3] 3L_1374379_SNP [dm6]	A	C	3.655e^-4	0.999	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
3L	19090182	3L_19090182_SNP [dm3] 3L_19097082_SNP [dm6]	C	T	3.657e^-4	0.999	NON_SYNONYMOUS_CODING CG10424 UPSTREAM CG11577 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1931837	2L_1931837_SNP [dm3] 2L_1931837_SNP [dm6]	T	C	3.666e^-4	0.999	INTRON CG7337
3L	9956589	3L_9956589_SNP [dm3] 3L_9963489_SNP [dm6]	C	G	3.671e^-4	0.999	INTRON CG34356
3L	6793856	3L_6793856_SNP [dm3] 3L_6800756_SNP [dm6]	C	A	3.677e^-4	0.999	INTERGENIC
2L	9504571	2L_9504571_SNP [dm3] 2L_9504571_SNP [dm6]	T	C	3.683e^-4	0.999	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_cad
2R	12730799	2R_12730799_SNP [dm3] 2R_16843294_SNP [dm6]	A	T	3.689e^-4	0.999	DOWNSTREAM Ugt37c1 INTERGENIC
3R	19437576	3R_19437576_SNP [dm3] 3R_23611854_SNP [dm6]	T	G	3.694e^-4	0.999	INTRON CG31145
3L	15537508	3L_15537508_SNP [dm3] 3L_15544408_SNP [dm6]	G	A	3.706e^-4	0.999	INTRON CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18293543	2R_18293543_INS [dm3] 2R_22406038_INS [dm6]	G	GGGG	3.707e^-4	0.999	INTRON CG6044
X	15966888	X_15966888_SNP [dm3] X_16072855_SNP [dm6]	C	T	3.715e^-4	0.999	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1374447	3L_1374447_SNP [dm3] 3L_1374447_SNP [dm6]	C	A	3.718e^-4	0.999	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6356772	2L_6356772_SNP [dm3] 2L_6356772_SNP [dm6]	G	T	3.738e^-4	0.999	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17848689	2L_17848689_SNP [dm3] 2L_17848689_SNP [dm6]	T	C	3.742e^-4	0.999	INTRON CadN2
X	2992763	X_2992763_SNP [dm3] X_3098730_SNP [dm6]	T	A	3.743e^-4	0.999	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7280489	3L_7280489_SNP [dm3] 3L_7287389_SNP [dm6]	G	T	3.743e^-4	0.999	INTRON unc-13-4A
3R	25454157	3R_25454157_SNP [dm3] 3R_29628435_SNP [dm6]	T	G	3.750e^-4	0.999	INTERGENIC
3L	14445395	3L_14445395_SNP [dm3] 3L_14452295_SNP [dm6]	A	T	3.754e^-4	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14445399	3L_14445399_SNP [dm3] 3L_14452299_SNP [dm6]	T	G	3.754e^-4	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12052704	2R_12052704_SNP [dm3] 2R_16165199_SNP [dm6]	C	T	3.767e^-4	0.999	INTRON lbk	TF binding site mE1_TFBS_HSA
3L	2290239	3L_2290239_DEL [dm3] 3L_2290239_DEL [dm6]	GCGCCAAA	G	3.782e^-4	0.999	INTRON MsR2
X	16334368	X_16334368_SNP [dm3] X_16440335_SNP [dm6]	C	T	3.783e^-4	0.999	SYNONYMOUS_CODING CG9947	TF binding site mE1_TFBS_sens
X	16336526	X_16336526_INS [dm3] X_16442493_INS [dm6]	T	TT	3.783e^-4	0.999	INTRON rngo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21332014	3R_21332014_SNP [dm3] 3R_25506292_SNP [dm6]	C	G	3.783e^-4	0.999	UTR_5_PRIME CG5111 DOWNSTREAM CG5107	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	13110792	2L_13110792_INS [dm3] 2L_13110792_INS [dm6]	T	TTA	3.785e^-4	0.999	INTERGENIC
3R	8934362	3R_8934362_SNP [dm3] 3R_13108640_SNP [dm6]	T	A	3.788e^-4	0.999	INTRON timeout
X	1171882	X_1171882_SNP [dm3] X_1277849_SNP [dm6]	T	A	3.789e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
3L	19084166	3L_19084166_SNP [dm3] 3L_19091066_SNP [dm6]	G	A	3.802e^-4	0.999	DOWNSTREAM CR45386 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13111054	2L_13111054_SNP [dm3] 2L_13111054_SNP [dm6]	A	T	3.810e^-4	0.999	INTERGENIC
3L	7627992	3L_7627992_SNP [dm3] 3L_7634892_SNP [dm6]	C	T	3.814e^-4	0.999	INTRON CG33275	TF binding site mE1_TFBS_HSA
3R	10453926	3R_10453926_SNP [dm3] 3R_14628204_SNP [dm6]	T	C	3.817e^-4	0.999	SYNONYMOUS_CODING CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5974658	3L_5974658_SNP [dm3] 3L_5981558_SNP [dm6]	G	T	3.831e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	6905569	2L_6905569_SNP [dm3] 2L_6905569_SNP [dm6]	G	T	3.846e^-4	0.999	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	3.849e^-4	0.999	INTRON Rab40
2L	13275236	2L_13275236_SNP [dm3] 2L_13275236_SNP [dm6]	A	T	3.856e^-4	0.999	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
2L	13275239	2L_13275239_SNP [dm3] 2L_13275239_SNP [dm6]	A	T	3.856e^-4	0.999	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
2L	2001634	2L_2001634_SNP [dm3] 2L_2001634_SNP [dm6]	C	A	3.860e^-4	0.999	INTRON CG33543 EXON CR43464
2R	21087685	2R_21087685_SNP [dm3] 2R_25200162_SNP [dm6]	C	T	3.865e^-4	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	2076187	2L_2076187_SNP [dm3] 2L_2076187_SNP [dm6]	C	T	3.867e^-4	0.999	INTRON dpr3
2L	13254087	2L_13254087_SNP [dm3] 2L_13254087_SNP [dm6]	T	A	3.869e^-4	0.999	INTRON CG31728
X	16186803	X_16186803_SNP [dm3] X_16292770_SNP [dm6]	A	G	3.871e^-4	0.999	INTRON caz
2R	11487532	2R_11487532_SNP [dm3] 2R_15600027_SNP [dm6]	T	A	3.880e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20045795	2R_20045795_SNP [dm3] 2R_24158272_SNP [dm6]	A	C	3.883e^-4	0.999	UTR_5_PRIME CG42568 UTR_3_PRIME DnaJ-60 DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7718318	3L_7718318_SNP [dm3] 3L_7725218_SNP [dm6]	T	C	3.893e^-4	0.999	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24374015	3R_24374015_DEL [dm3] 3R_28548293_DEL [dm6]	TTCAGTTTTTT...	T	3.909e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13213524	X_13213524_SNP [dm3] X_13319491_SNP [dm6]	A	C	3.920e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	13213582	X_13213582_SNP [dm3] X_13319549_SNP [dm6]	A	T	3.920e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	13213625	X_13213625_SNP [dm3] X_13319592_SNP [dm6]	A	G	3.920e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	11573953	3L_11573953_SNP [dm3] 3L_11580853_SNP [dm6]	A	G	3.921e^-4	0.999	UTR_3_PRIME CG43391 UPSTREAM CG43390 DOWNSTREAM CG33269
2R	19324139	2R_19324139_SNP [dm3] 2R_23436616_SNP [dm6]	C	G	3.924e^-4	0.999	INTERGENIC
2R	11535978	2R_11535978_SNP [dm3] 2R_15648473_SNP [dm6]	A	G	3.951e^-4	0.999	INTRON CG42524
3L	11345085	3L_11345085_SNP [dm3] 3L_11351985_SNP [dm6]	G	C	3.976e^-4	0.999	INTERGENIC
2R	7043337	2R_7043337_SNP [dm3] 2R_11155832_SNP [dm6]	G	A	3.982e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
3L	15635536	3L_15635536_SNP [dm3] 3L_15642436_SNP [dm6]	T	A	3.984e^-4	0.999	INTRON comm3
3L	18645065	3L_18645065_SNP [dm3] 3L_18651965_SNP [dm6]	T	C	3.984e^-4	0.999	INTRON MYPT-75D
3R	2776399	3R_2776399_SNP [dm3] 3R_6950677_SNP [dm6]	G	A	4.001e^-4	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2776417	3R_2776417_SNP [dm3] 3R_6950695_SNP [dm6]	G	A	4.001e^-4	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5978799	2R_5978799_SNP [dm3] 2R_10091294_SNP [dm6]	A	T	4.003e^-4	0.999	INTRON CG2269
X	16335425	X_16335425_SNP [dm3] X_16441392_SNP [dm6]	A	C	4.011e^-4	0.999	UPSTREAM rngo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5194753	X_5194753_SNP [dm3] X_5300720_SNP [dm6]	T	C	4.013e^-4	0.999	INTRON CG42749
2L	15381018	2L_15381018_SNP [dm3] 2L_15381018_SNP [dm6]	C	G	4.015e^-4	0.999	INTERGENIC
3L	16631800	3L_16631800_SNP [dm3] 3L_16638700_SNP [dm6]	T	C	4.018e^-4	0.999	INTRON Abl
X	7758877	X_7758877_SNP [dm3] X_7864844_SNP [dm6]	G	C	4.018e^-4	0.999	DOWNSTREAM Ir7b INTERGENIC
3L	4595247	3L_4595247_SNP [dm3] 3L_4595247_SNP [dm6]	G	T	4.050e^-4	0.999	SYNONYMOUS_CODING Src64B	TF binding site mE1_TFBS_cad
3L	19149572	3L_19149572_SNP [dm3] 3L_19156472_SNP [dm6]	G	A	4.055e^-4	0.999	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7043319	2R_7043319_SNP [dm3] 2R_11155814_SNP [dm6]	G	A	4.071e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
3L	10101405	3L_10101405_SNP [dm3] 3L_10108305_SNP [dm6]	G	A	4.077e^-4	0.999	INTRON dpr6
3R	25685620	3R_25685620_SNP [dm3] 3R_29859898_SNP [dm6]	A	G	4.079e^-4	0.999	UPSTREAM CG7824 & 1 other DOWNSTREAM CG15514 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25685629	3R_25685629_SNP [dm3] 3R_29859907_SNP [dm6]	G	A	4.079e^-4	0.999	UPSTREAM CG7824 & 1 other DOWNSTREAM CG15514 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2287230	3L_2287230_SNP [dm3] 3L_2287230_SNP [dm6]	C	T	4.094e^-4	0.999	INTRON MsR2
2R	4773319	2R_4773319_SNP [dm3] 2R_8885814_SNP [dm6]	C	T	4.097e^-4	0.999	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15136631	2L_15136631_SNP [dm3] 2L_15136631_SNP [dm6]	T	C	4.102e^-4	0.999	INTERGENIC
2L	15136634	2L_15136634_SNP [dm3] 2L_15136634_SNP [dm6]	A	G	4.102e^-4	0.999	INTERGENIC
2R	7948207	2R_7948207_SNP [dm3] 2R_12060702_SNP [dm6]	G	A	4.104e^-4	0.999	INTRON Drep-3
2L	9757901	2L_9757901_INS [dm3] 2L_9757901_INS [dm6]	T	TCTT	4.106e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2R	10446694	2R_10446694_SNP [dm3] 2R_14559189_SNP [dm6]	C	G	4.121e^-4	0.999	INTRON ttv
3L	9806026	3L_9806026_SNP [dm3] 3L_9812926_SNP [dm6]	G	T	4.129e^-4	0.999	UPSTREAM CG43897 INTERGENIC
2R	16702735	2R_16702735_SNP [dm3] 2R_20815230_SNP [dm6]	A	G	4.132e^-4	0.999	INTERGENIC
3L	12412763	3L_12412763_SNP [dm3] 3L_12419663_SNP [dm6]	C	G	4.136e^-4	0.999	INTERGENIC
2R	11296313	2R_11296313_SNP [dm3] 2R_15408808_SNP [dm6]	G	A	4.137e^-4	0.999	UPSTREAM Mtk INTRON CG43729	regulatory region REDfly_CRMs
2R	11296348	2R_11296348_SNP [dm3] 2R_15408843_SNP [dm6]	A	T	4.137e^-4	0.999	UPSTREAM Mtk INTRON CG43729	regulatory region REDfly_CRMs
3L	12354769	3L_12354769_SNP [dm3] 3L_12361669_SNP [dm6]	G	A	4.141e^-4	0.999	INTERGENIC
2R	20371689	2R_20371689_SNP [dm3] 2R_24484166_SNP [dm6]	A	G	4.164e^-4	0.999	INTRON CG13579
2R	11535947	2R_11535947_SNP [dm3] 2R_15648442_SNP [dm6]	C	A	4.180e^-4	0.999	INTRON CG42524
2R	11535957	2R_11535957_SNP [dm3] 2R_15648452_SNP [dm6]	C	T	4.180e^-4	0.999	INTRON CG42524
2L	5277357	2L_5277357_SNP [dm3] 2L_5277357_SNP [dm6]	T	A	4.180e^-4	0.999	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9391217	3R_9391217_SNP [dm3] 3R_13565495_SNP [dm6]	G	A	4.182e^-4	0.999	INTERGENIC
X	15966871	X_15966871_SNP [dm3] X_16072838_SNP [dm6]	G	A	4.192e^-4	0.999	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6492702	3L_6492702_SNP [dm3] 3L_6499602_SNP [dm6]	A	T	4.194e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6492705	3L_6492705_SNP [dm3] 3L_6499605_SNP [dm6]	G	A	4.194e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	7951699	2L_7951699_SNP [dm3] 2L_7951699_SNP [dm6]	G	A	4.205e^-4	0.999	INTRON Snoo
X	6497856	X_6497856_SNP [dm3] X_6603823_SNP [dm6]	A	C	4.210e^-4	0.999	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6497868	X_6497868_SNP [dm3] X_6603835_SNP [dm6]	A	C	4.210e^-4	0.999	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	605247	3L_605247_SNP [dm3] 3L_605247_SNP [dm6]	G	T	4.220e^-4	0.999	SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16332852	X_16332852_SNP [dm3] X_16438819_SNP [dm6]	G	A	4.225e^-4	0.999	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other
2R	11166345	2R_11166345_SNP [dm3] 2R_15278840_SNP [dm6]	G	C	4.229e^-4	0.999	INTRON Trpm
X	15966694	X_15966694_SNP [dm3] X_16072661_SNP [dm6]	C	A	4.236e^-4	0.999	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
2L	4767272	2L_4767272_SNP [dm3] 2L_4767272_SNP [dm6]	C	T	4.244e^-4	0.999	INTRON CG15630
X	2992823	X_2992823_SNP [dm3] X_3098790_SNP [dm6]	A	C	4.254e^-4	0.999	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	7964317	2R_7964317_SNP [dm3] 2R_12076812_SNP [dm6]	A	T	4.263e^-4	0.999	INTRON CG8888
X	13213640	X_13213640_SNP [dm3] X_13319607_SNP [dm6]	C	T	4.280e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	13210633	2L_13210633_SNP [dm3] 2L_13210633_SNP [dm6]	C	T	4.281e^-4	0.999	UTR_3_PRIME Pect DOWNSTREAM CG15482
3L	15399173	3L_15399173_DEL [dm3] 3L_15406073_DEL [dm6]	CACGTGCTATCTCTTTCTCT...	C	4.292e^-4	0.999	INTERGENIC
X	5575604	X_5575604_SNP [dm3] X_5681571_SNP [dm6]	G	A	4.298e^-4	0.999	NON_SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
3L	5375218	3L_5375218_SNP [dm3] 3L_5382118_SNP [dm6]	C	T	4.299e^-4	0.999	INTRON Ir64a
3L	9898626	3L_9898626_SNP [dm3] 3L_9905526_SNP [dm6]	A	C	4.302e^-4	0.999	INTERGENIC
X	13010962	X_13010962_SNP [dm3] X_13116929_SNP [dm6]	T	C	4.302e^-4	0.999	INTRON CG42237
X	13010971	X_13010971_SNP [dm3] X_13116938_SNP [dm6]	A	T	4.302e^-4	0.999	INTRON CG42237
X	5921439	X_5921439_SNP [dm3] X_6027406_SNP [dm6]	A	G	4.316e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7280457	3L_7280457_SNP [dm3] 3L_7287357_SNP [dm6]	T	A	4.332e^-4	0.999	INTRON unc-13-4A
2L	9511075	2L_9511075_SNP [dm3] 2L_9511075_SNP [dm6]	G	A	4.336e^-4	0.999	INTRON CG33298
3R	25658417	3R_25658417_DEL [dm3] 3R_29832695_DEL [dm6]	AA	A	4.338e^-4	0.999	INTRON Atg16
3R	25490007	3R_25490007_SNP [dm3] 3R_29664285_SNP [dm6]	C	T	4.381e^-4	0.999	UPSTREAM ppk21 INTERGENIC
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	4.381e^-4	0.999	INTRON Cad87A	TF binding site mE1_TFBS_HSA
X	16332855	X_16332855_SNP [dm3] X_16438822_SNP [dm6]	C	G	4.384e^-4	0.999	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other
X	19882687	X_19882687_SNP [dm3] X_19988654_SNP [dm6]	T	A	4.389e^-4	0.999	INTERGENIC
X	19882703	X_19882703_SNP [dm3] X_19988670_SNP [dm6]	C	T	4.389e^-4	0.999	INTERGENIC
2L	2740885	2L_2740885_SNP [dm3] 2L_2740885_SNP [dm6]	T	C	4.389e^-4	0.999	UPSTREAM Hrs INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10317536	2R_10317536_SNP [dm3] 2R_14430031_SNP [dm6]	A	G	4.390e^-4	0.999	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4693035	X_4693035_SNP [dm3] X_4799002_SNP [dm6]	T	A	4.406e^-4	0.999	NON_SYNONYMOUS_CODING CG2861
X	18959722	X_18959722_SNP [dm3] X_19065689_SNP [dm6]	A	G	4.420e^-4	0.999	NON_SYNONYMOUS_CODING CG14190
X	18959727	X_18959727_SNP [dm3] X_19065694_SNP [dm6]	A	C	4.420e^-4	0.999	NON_SYNONYMOUS_CODING CG14190
2R	16426280	2R_16426280_SNP [dm3] 2R_20538775_SNP [dm6]	A	G	4.423e^-4	0.999	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19101626	3L_19101626_SNP [dm3] 3L_19108526_SNP [dm6]	G	A	4.424e^-4	0.999	INTRON CG14082	TF binding site mE1_TFBS_inv
2L	5281737	2L_5281737_SNP [dm3] 2L_5281737_SNP [dm6]	T	C	4.428e^-4	0.999	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
3R	19797655	3R_19797655_SNP [dm3] 3R_23971933_SNP [dm6]	A	C	4.434e^-4	0.999	INTRON CG31140
3R	15373101	3R_15373101_SNP [dm3] 3R_19547379_SNP [dm6]	T	A	4.446e^-4	0.999	INTRON Dys
X	16334044	X_16334044_SNP [dm3] X_16440011_SNP [dm6]	C	A	4.453e^-4	0.999	NON_SYNONYMOUS_CODING CG9947	TF binding site mE1_TFBS_sens
3L	15491693	3L_15491693_SNP [dm3] 3L_15498593_SNP [dm6]	A	G	4.457e^-4	0.999	SYNONYMOUS_CODING CG7276 UPSTREAM CG7275 DOWNSTREAM CG13455	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27371628	3R_27371628_SNP [dm3] 3R_31545906_SNP [dm6]	A	G	4.465e^-4	0.999	INTRON nyo
3R	16998940	3R_16998940_SNP [dm3] 3R_21173218_SNP [dm6]	T	G	4.467e^-4	0.999	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3R	13983206	3R_13983206_SNP [dm3] 3R_18157484_SNP [dm6]	G	A	4.469e^-4	0.999	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24326568	3R_24326568_SNP [dm3] 3R_28500846_SNP [dm6]	A	G	4.481e^-4	0.999	INTRON Dhc98D
2L	13697547	2L_13697547_SNP [dm3] 2L_13697547_SNP [dm6]	C	T	4.481e^-4	0.999	INTRON CG31814
3L	22876601	3L_22876601_SNP [dm3] 3L_22883501_SNP [dm6]	C	T	4.483e^-4	0.999	INTRON slif	transposable element FlyBase
X	21325303	X_21325303_SNP [dm3] X_21454276_SNP [dm6]	A	T	4.500e^-4	0.999	INTRON CG42343
3L	14390671	3L_14390671_SNP [dm3] 3L_14397571_SNP [dm6]	G	T	4.501e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13235880	2R_13235880_SNP [dm3] 2R_17348375_SNP [dm6]	C	T	4.505e^-4	0.999	INTRON mbl
2L	7025753	2L_7025753_SNP [dm3] 2L_7025753_SNP [dm6]	A	G	4.516e^-4	0.999	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	8034039	3L_8034039_SNP [dm3] 3L_8040939_SNP [dm6]	C	T	4.523e^-4	0.999	INTRON nmo
2L	11055898	2L_11055898_SNP [dm3] 2L_11055898_SNP [dm6]	C	A	4.524e^-4	0.999	INTRON Samuel	TF binding site BDTNP1_TFBS_dl
2L	17825389	2L_17825389_SNP [dm3] 2L_17825389_SNP [dm6]	A	C	4.526e^-4	0.999	INTRON CadN2
2L	13105649	2L_13105649_SNP [dm3] 2L_13105649_SNP [dm6]	T	G	4.564e^-4	0.999	DOWNSTREAM CR45461 INTERGENIC
3L	19095243	3L_19095243_SNP [dm3] 3L_19102143_SNP [dm6]	A	T	4.566e^-4	0.999	INTERGENIC
2L	13135973	2L_13135973_SNP [dm3] 2L_13135973_SNP [dm6]	C	T	4.568e^-4	0.999	INTERGENIC
2R	10317507	2R_10317507_SNP [dm3] 2R_14430002_SNP [dm6]	T	A	4.574e^-4	0.999	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4274546	X_4274546_SNP [dm3] X_4380513_SNP [dm6]	T	A	4.584e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4274565	X_4274565_SNP [dm3] X_4380532_SNP [dm6]	A	C	4.584e^-4	0.999	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14443282	3L_14443282_SNP [dm3] 3L_14450182_SNP [dm6]	A	T	4.605e^-4	0.999	INTRON bbg
3R	14531156	3R_14531156_SNP [dm3] 3R_18705434_SNP [dm6]	G	T	4.613e^-4	0.999	UPSTREAM VAChT & 1 other INTERGENIC
2R	19921732	2R_19921732_SNP [dm3] 2R_24034209_SNP [dm6]	A	C	4.625e^-4	0.999	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	7011012	2L_7011012_SNP [dm3] 2L_7011012_SNP [dm6]	T	A	4.629e^-4	0.999	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7011030	2L_7011030_SNP [dm3] 2L_7011030_SNP [dm6]	C	T	4.629e^-4	0.999	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11818651	2L_11818651_SNP [dm3] 2L_11818651_SNP [dm6]	G	A	4.633e^-4	0.999	SYNONYMOUS_CODING Pde1c	TF binding site mE1_TFBS_cad
2L	10708322	2L_10708322_SNP [dm3] 2L_10708322_SNP [dm6]	G	C	4.637e^-4	0.999	INTRON Lip2
2R	12265987	2R_12265987_SNP [dm3] 2R_16378482_SNP [dm6]	A	G	4.666e^-4	0.999	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
2R	12265991	2R_12265991_SNP [dm3] 2R_16378486_SNP [dm6]	T	G	4.666e^-4	0.999	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
3L	2130522	3L_2130522_SNP [dm3] 3L_2130522_SNP [dm6]	C	A	4.670e^-4	0.999	INTRON zormin
2R	12709503	2R_12709503_SNP [dm3] 2R_16821998_SNP [dm6]	C	T	4.683e^-4	0.999	INTERGENIC
X	12783059	X_12783059_SNP [dm3] X_12889026_SNP [dm6]	G	A	4.684e^-4	0.999	INTRON Pde9
X	22296967	X_22296967_DEL [dm3] X_22895131_DEL [dm6]	AA	G	4.688e^-4	0.999	INTERGENIC
3R	24629865	3R_24629865_SNP [dm3] 3R_28804143_SNP [dm6]	G	T	4.704e^-4	0.999	INTERGENIC
2L	9019603	2L_9019603_SNP [dm3] 2L_9019603_SNP [dm6]	G	T	4.712e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17753235	3R_17753235_SNP [dm3] 3R_21927513_SNP [dm6]	T	A	4.717e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	24290896	3R_24290896_SNP [dm3] 3R_28465174_SNP [dm6]	A	G	4.724e^-4	0.999	INTRON beat-VI
3L	13504921	3L_13504921_SNP [dm3] 3L_13511821_SNP [dm6]	A	G	4.743e^-4	0.999	SYNONYMOUS_CODING Vps36 DOWNSTREAM Spt20
X	16289649	X_16289649_SNP [dm3] X_16395616_SNP [dm6]	T	C	4.745e^-4	0.999	SYNONYMOUS_CODING mei-41
X	11110723	X_11110723_DEL [dm3] X_11216690_DEL [dm6]	TA	T	4.747e^-4	0.999	INTERGENIC
2R	16488705	2R_16488705_SNP [dm3] 2R_20601200_SNP [dm6]	C	T	4.752e^-4	0.999	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19078379	3L_19078379_SNP [dm3] 3L_19085279_SNP [dm6]	T	C	4.762e^-4	0.999	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	18293235	X_18293235_INS [dm3] X_18399202_INS [dm6]	T	TT	4.774e^-4	0.999	DOWNSTREAM CG34328 INTRON CG32549	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16963276	X_16963276_SNP [dm3] X_17069243_SNP [dm6]	A	T	4.785e^-4	0.999	UTR_3_PRIME CG8949 UPSTREAM CG43077
3L	11542732	3L_11542732_SNP [dm3] 3L_11549632_SNP [dm6]	G	A	4.790e^-4	0.999	INTRON Mob2
2L	9757831	2L_9757831_SNP [dm3] 2L_9757831_SNP [dm6]	G	A	4.796e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757833	2L_9757833_SNP [dm3] 2L_9757833_SNP [dm6]	A	C	4.796e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	9757839	2L_9757839_SNP [dm3] 2L_9757839_SNP [dm6]	G	A	4.796e^-4	0.999	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	6492794	3L_6492794_SNP [dm3] 3L_6499694_SNP [dm6]	A	C	4.803e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6492806	3L_6492806_SNP [dm3] 3L_6499706_SNP [dm6]	T	C	4.803e^-4	0.999	INTRON sfl
3R	12646021	3R_12646021_DEL [dm3] 3R_16820299_DEL [dm6]	TTTGCGTTTGTATTGAAGGA...	T	4.811e^-4	0.999	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12646059	3R_12646059_SNP [dm3] 3R_16820337_SNP [dm6]	T	C	4.811e^-4	0.999	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12646061	3R_12646061_SNP [dm3] 3R_16820339_SNP [dm6]	A	C	4.811e^-4	0.999	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12646062	3R_12646062_DEL [dm3] 3R_16820340_DEL [dm6]	ATTGAAT	A	4.811e^-4	0.999	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	13557867	2R_13557867_SNP [dm3] 2R_17670362_SNP [dm6]	G	T	4.814e^-4	0.999	UPSTREAM CR44404 DOWNSTREAM CG30108 & 1 other INTRON CG30109	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16157906	3L_16157906_SNP [dm3] 3L_16164806_SNP [dm6]	G	A	4.836e^-4	0.999	UPSTREAM CG5151 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4321747	2L_4321747_SNP [dm3] 2L_4321747_SNP [dm6]	A	C	4.847e^-4	0.999	UTR_3_PRIME tutl DOWNSTREAM tutl
2L	8799276	2L_8799276_SNP [dm3] 2L_8799276_SNP [dm6]	T	A	4.858e^-4	0.999	INTERGENIC
X	16334736	X_16334736_SNP [dm3] X_16440703_SNP [dm6]	A	G	4.862e^-4	0.999	NON_SYNONYMOUS_CODING CG9947 UPSTREAM rngo	TF binding site BDTNP1_TFBS_dl
3R	9573889	3R_9573889_SNP [dm3] 3R_13748167_SNP [dm6]	T	A	4.885e^-4	0.999	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13764006	2L_13764006_SNP [dm3] 2L_13764006_SNP [dm6]	G	C	4.895e^-4	0.999	INTRON TM9SF4
3L	8917106	3L_8917106_DEL [dm3] 3L_8924006_DEL [dm6]	GA	T	4.897e^-4	0.999	INTRON Tsp66E
2L	6757220	2L_6757220_SNP [dm3] 2L_6757220_SNP [dm6]	A	C	4.906e^-4	0.999	DOWNSTREAM CG11322 INTERGENIC
3R	20606783	3R_20606783_SNP [dm3] 3R_24781061_SNP [dm6]	T	G	4.919e^-4	0.999	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	14089145	X_14089145_SNP [dm3] X_14195112_SNP [dm6]	T	C	4.924e^-4	0.999	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	15635172	3L_15635172_SNP [dm3] 3L_15642072_SNP [dm6]	T	A	4.928e^-4	0.999	INTRON comm3
X	2611324	X_2611324_SNP [dm3] X_2717291_SNP [dm6]	T	A	4.939e^-4	0.999	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
X	16621146	X_16621146_SNP [dm3] X_16727113_SNP [dm6]	A	T	4.944e^-4	0.999	DOWNSTREAM CG9634 & 1 other INTERGENIC
3R	13475499	3R_13475499_SNP [dm3] 3R_17649777_SNP [dm6]	T	G	4.945e^-4	0.999	INTRON CG14322
X	21173823	X_21173823_SNP [dm3] X_21302796_SNP [dm6]	C	T	4.947e^-4	0.999	UTR_5_PRIME CG1718 INTRON CG1718
3L	8319827	3L_8319827_SNP [dm3] 3L_8326727_SNP [dm6]	A	G	4.957e^-4	0.999	INTRON CG34461	TF binding site mE1_TFBS_cad
2R	8208525	2R_8208525_SNP [dm3] 2R_12321020_SNP [dm6]	C	T	4.960e^-4	0.999	UPSTREAM CG13163 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25490166	3R_25490166_INS [dm3] 3R_29664444_INS [dm6]	A	AA	4.973e^-4	0.999	UPSTREAM ppk21 INTERGENIC
2R	18458514	2R_18458514_SNP [dm3] 2R_22571009_SNP [dm6]	T	G	4.975e^-4	0.999	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3389903	2L_3389903_SNP [dm3] 2L_3389903_SNP [dm6]	T	G	4.976e^-4	0.999	DOWNSTREAM CR44791 INTERGENIC
X	2391317	X_2391317_SNP [dm3] X_2497284_SNP [dm6]	G	A	4.984e^-4	0.999	INTRON trol
3R	20845452	3R_20845452_SNP [dm3] 3R_25019730_SNP [dm6]	A	G	4.994e^-4	0.999	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17199951	X_17199951_SNP [dm3] X_17305918_SNP [dm6]	T	A	5.008e^-4	0.999	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
X	17199959	X_17199959_SNP [dm3] X_17305926_SNP [dm6]	A	C	5.008e^-4	0.999	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	1682354	3L_1682354_SNP [dm3] 3L_1682354_SNP [dm6]	C	T	5.008e^-4	0.999	INTRON CG7991
3L	1682360	3L_1682360_SNP [dm3] 3L_1682360_SNP [dm6]	G	A	5.008e^-4	0.999	INTRON CG7991
2L	10713923	2L_10713923_SNP [dm3] 2L_10713923_SNP [dm6]	C	T	5.012e^-4	0.999	INTERGENIC
3R	15338864	3R_15338864_INS [dm3] 3R_19513142_INS [dm6]	A	AACA	5.013e^-4	0.999	INTRON Dys
3R	13221493	3R_13221493_SNP [dm3] 3R_17395771_SNP [dm6]	T	A	5.015e^-4	0.999	UTR_3_PRIME Sur-8 DOWNSTREAM Sur-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_zfh1
3R	8412651	3R_8412651_SNP [dm3] 3R_12586929_SNP [dm6]	A	C	5.028e^-4	0.999	INTRON Octbeta2R
X	16316305	X_16316305_SNP [dm3] X_16422272_SNP [dm6]	A	G	5.030e^-4	0.999	UPSTREAM hang & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5917392	3L_5917392_SNP [dm3] 3L_5924292_SNP [dm6]	C	T	5.041e^-4	0.999	DOWNSTREAM CG32407 INTRON Vap-33B	TF binding site mE1_TFBS_cad
3L	7467458	3L_7467458_SNP [dm3] 3L_7474358_SNP [dm6]	G	A	5.052e^-4	0.999	INTERGENIC
3L	18199958	3L_18199958_SNP [dm3] 3L_18206858_SNP [dm6]	T	C	5.059e^-4	0.999	INTERGENIC
3L	11552404	3L_11552404_SNP [dm3] 3L_11559304_SNP [dm6]	G	A	5.061e^-4	0.999	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3L	2290228	3L_2290228_SNP [dm3] 3L_2290228_SNP [dm6]	T	A	5.076e^-4	0.999	INTRON MsR2
3L	2290235	3L_2290235_SNP [dm3] 3L_2290235_SNP [dm6]	G	A	5.076e^-4	0.999	INTRON MsR2
2R	6409961	2R_6409961_SNP [dm3] 2R_10522456_SNP [dm6]	G	A	5.078e^-4	0.999	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14208034	3R_14208034_SNP [dm3] 3R_18382312_SNP [dm6]	A	G	5.081e^-4	0.999	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3R	14208085	3R_14208085_SNP [dm3] 3R_18382363_SNP [dm6]	A	G	5.081e^-4	0.999	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3R	14208109	3R_14208109_SNP [dm3] 3R_18382387_SNP [dm6]	T	C	5.081e^-4	0.999	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3R	14208127	3R_14208127_SNP [dm3] 3R_18382405_SNP [dm6]	A	G	5.081e^-4	0.999	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
2L	17891593	2L_17891593_SNP [dm3] 2L_17891593_SNP [dm6]	T	C	5.083e^-4	0.999	INTERGENIC
X	2993808	X_2993808_SNP [dm3] X_3099775_SNP [dm6]	G	T	5.086e^-4	0.999	UTR_5_PRIME kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16337473	X_16337473_SNP [dm3] X_16443440_SNP [dm6]	C	A	5.123e^-4	0.999	INTRON rngo	TF binding site mE1_TFBS_cad
2R	7959705	2R_7959705_SNP [dm3] 2R_12072200_SNP [dm6]	A	T	5.143e^-4	0.999	INTRON CG8888
X	18937710	X_18937710_SNP [dm3] X_19043677_SNP [dm6]	C	A	5.152e^-4	0.999	INTERGENIC
2L	6356718	2L_6356718_SNP [dm3] 2L_6356718_SNP [dm6]	T	G	5.161e^-4	0.999	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	12943566	2L_12943566_SNP [dm3] 2L_12943566_SNP [dm6]	A	C	5.177e^-4	0.999	INTERGENIC
3L	2629591	3L_2629591_DEL [dm3] 3L_2629591_DEL [dm6]	AA	A	5.195e^-4	0.999	SPLICE_SITE_REGION Pxn UTR_5_PRIME Pxn UPSTREAM Pxn DOWNSTREAM CR45660 INTRON Pxn
3R	13825871	3R_13825871_SNP [dm3] 3R_18000149_SNP [dm6]	C	T	5.198e^-4	0.999	INTRON cpo
X	21307186	X_21307186_SNP [dm3] X_21436159_SNP [dm6]	C	A	5.206e^-4	0.999	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21307187	X_21307187_SNP [dm3] X_21436160_SNP [dm6]	G	T	5.206e^-4	0.999	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22878571	3R_22878571_INS [dm3] 3R_27052849_INS [dm6]	C	CTCACAGCCAA...	5.232e^-4	0.999	INTRON RYa-R
X	21308262	X_21308262_SNP [dm3] X_21437235_SNP [dm6]	A	G	5.246e^-4	0.999	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	10938580	2R_10938580_SNP [dm3] 2R_15051075_SNP [dm6]	C	T	5.255e^-4	0.999	UPSTREAM CR43622 INTERGENIC
3L	3628482	3L_3628482_SNP [dm3] 3L_3628482_SNP [dm6]	A	C	5.276e^-4	0.999	INTRON dar1
2R	15463998	2R_15463998_SNP [dm3] 2R_19576493_SNP [dm6]	A	G	5.277e^-4	0.999	INTRON sm
X	22183075	X_22183075_SNP [dm3] X_22781239_SNP [dm6]	A	G	5.284e^-4	0.999	INTRON CR44997
2L	11920370	2L_11920370_DEL [dm3] 2L_11920370_DEL [dm6]	TT	T	5.291e^-4	0.999	INTRON Pde1c
2R	17921819	2R_17921819_SNP [dm3] 2R_22034314_SNP [dm6]	C	T	5.300e^-4	0.999	UPSTREAM CG9308 INTRON CG34370
2L	12944305	2L_12944305_SNP [dm3] 2L_12944305_SNP [dm6]	T	C	5.301e^-4	0.999	INTERGENIC
2R	5205358	2R_5205358_SNP [dm3] 2R_9317853_SNP [dm6]	G	T	5.301e^-4	0.999	SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1352889	2L_1352889_SNP [dm3] 2L_1352889_SNP [dm6]	C	T	5.304e^-4	0.999	UPSTREAM CG5556 DOWNSTREAM CG5561 INTERGENIC
X	21307154	X_21307154_SNP [dm3] X_21436127_SNP [dm6]	A	G	5.314e^-4	0.999	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16331954	X_16331954_SNP [dm3] X_16437921_SNP [dm6]	G	A	5.328e^-4	0.999	UTR_3_PRIME hang & 1 other
X	4917980	X_4917980_DEL [dm3] X_5023947_DEL [dm6]	CT	C	5.337e^-4	0.999	INTRON CR44833	regulatory region REDfly_CRMs
3L	13344151	3L_13344151_SNP [dm3] 3L_13351051_SNP [dm6]	A	G	5.338e^-4	0.999	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21072676	3R_21072676_DEL [dm3] 3R_25246954_DEL [dm6]	TCATTTGGGA	T	5.340e^-4	0.999	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	5520150	2R_5520150_SNP [dm3] 2R_9632645_SNP [dm6]	T	C	5.346e^-4	0.999	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	10708766	2L_10708766_SNP [dm3] 2L_10708766_SNP [dm6]	A	T	5.352e^-4	0.999	INTRON Lip2
2L	4526592	2L_4526592_INS [dm3] 2L_4526592_INS [dm6]	A	AAGGAA	5.359e^-4	0.999	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8330279	3L_8330279_SNP [dm3] 3L_8337179_SNP [dm6]	C	T	5.373e^-4	0.999	INTRON Cpr66Cb
2R	4138301	2R_4138301_SNP [dm3] 2R_8250796_SNP [dm6]	C	A	5.374e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16333865	X_16333865_SNP [dm3] X_16439832_SNP [dm6]	T	G	5.402e^-4	0.999	NON_SYNONYMOUS_CODING CG9947	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14390453	3L_14390453_SNP [dm3] 3L_14397353_SNP [dm6]	G	C	5.404e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2992580	X_2992580_SNP [dm3] X_3098547_SNP [dm6]	G	A	5.408e^-4	0.999	INTRON kirre	regulatory region REDfly_CRMs
2L	10092526	2L_10092526_SNP [dm3] 2L_10092526_SNP [dm6]	C	A	5.413e^-4	0.999	UPSTREAM CG13133 INTRON CG44153
2R	21090286	2R_21090286_SNP [dm3] 2R_25202763_SNP [dm6]	C	T	5.414e^-4	0.999	INTRON CG9380	TF binding site mE1_TFBS_D mE1_TFBS_Kr
2L	11819272	2L_11819272_SNP [dm3] 2L_11819272_SNP [dm6]	A	T	5.421e^-4	0.999	INTRON Pde1c
3L	14536788	3L_14536788_SNP [dm3] 3L_14543688_SNP [dm6]	T	A	5.429e^-4	0.999	INTRON CG9238
3R	10357919	3R_10357919_SNP [dm3] 3R_14532197_SNP [dm6]	A	G	5.444e^-4	0.999	INTRON Pde6
3R	10357970	3R_10357970_SNP [dm3] 3R_14532248_SNP [dm6]	C	T	5.444e^-4	0.999	INTRON Pde6
2R	11132798	2R_11132798_SNP [dm3] 2R_15245293_SNP [dm6]	G	A	5.455e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	9711105	3L_9711105_SNP [dm3] 3L_9718005_SNP [dm6]	A	C	5.462e^-4	0.999	NON_SYNONYMOUS_CODING CG18178 DOWNSTREAM vsg
2L	17883956	2L_17883956_SNP [dm3] 2L_17883956_SNP [dm6]	A	G	5.482e^-4	0.999	INTERGENIC
3L	19084128	3L_19084128_SNP [dm3] 3L_19091028_SNP [dm6]	G	T	5.491e^-4	0.999	DOWNSTREAM CR45386 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11573946	3L_11573946_SNP [dm3] 3L_11580846_SNP [dm6]	G	A	5.492e^-4	0.999	UTR_3_PRIME CG43391 UPSTREAM CG43390 DOWNSTREAM CG33269
X	16333134	X_16333134_SNP [dm3] X_16439101_SNP [dm6]	G	A	5.494e^-4	0.999	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other	TF binding site mE1_TFBS_sens
2R	7384932	2R_7384932_SNP [dm3] 2R_11497427_SNP [dm6]	T	C	5.494e^-4	0.999	INTRON inv
2R	7385182	2R_7385182_SNP [dm3] 2R_11497677_SNP [dm6]	A	G	5.494e^-4	0.999	INTRON inv
2L	10920256	2L_10920256_SNP [dm3] 2L_10920256_SNP [dm6]	A	G	5.508e^-4	0.999	INTRON dpr2
3R	16109730	3R_16109730_INS [dm3] 3R_20284008_INS [dm6]	G	GTGGA	5.511e^-4	0.999	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9045037	3R_9045037_SNP [dm3] 3R_13219315_SNP [dm6]	T	A	5.511e^-4	0.999	DOWNSTREAM CG8476 INTERGENIC
X	21991367	X_21991367_SNP [dm3] X_22589531_SNP [dm6]	A	T	5.516e^-4	0.999	INTRON Cda4	TF binding site BDTNP1_TFBS_dl
3L	1374415	3L_1374415_SNP [dm3] 3L_1374415_SNP [dm6]	C	A	5.526e^-4	0.999	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18624689	3L_18624689_SNP [dm3] 3L_18631589_SNP [dm6]	A	G	5.532e^-4	0.999	INTRON MYPT-75D
3R	3146296	3R_3146296_SNP [dm3] 3R_7320574_SNP [dm6]	A	G	5.534e^-4	0.999	INTERGENIC
3L	20851477	3L_20851477_SNP [dm3] 3L_20858377_SNP [dm6]	C	G	5.556e^-4	0.999	INTRON CG32432
3L	9584164	3L_9584164_SNP [dm3] 3L_9591064_SNP [dm6]	T	C	5.564e^-4	0.999	INTRON CG42673
2R	20006078	2R_20006078_SNP [dm3] 2R_24118555_SNP [dm6]	G	A	5.583e^-4	0.999	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	13371048	3L_13371048_SNP [dm3] 3L_13377948_SNP [dm6]	T	C	5.601e^-4	0.999	UPSTREAM CG14111 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15319267	3L_15319267_SNP [dm3] 3L_15326167_SNP [dm6]	G	C	5.611e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11819280	2L_11819280_SNP [dm3] 2L_11819280_SNP [dm6]	C	A	5.638e^-4	0.999	INTRON Pde1c
3R	16571610	3R_16571610_SNP [dm3] 3R_20745888_SNP [dm6]	C	T	5.643e^-4	0.999	UPSTREAM CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad
3L	10615618	3L_10615618_SNP [dm3] 3L_10622518_SNP [dm6]	C	A	5.650e^-4	0.999	DOWNSTREAM CG42521 INTERGENIC
3R	25449411	3R_25449411_SNP [dm3] 3R_29623689_SNP [dm6]	A	T	5.659e^-4	0.999	INTERGENIC
2L	22197786	2L_22197786_SNP [dm3] 2L_22197786_SNP [dm6]	T	G	5.670e^-4	0.999	INTRON Ir40a
2R	10328270	2R_10328270_SNP [dm3] 2R_14440765_SNP [dm6]	C	A	5.681e^-4	0.999	INTRON Oaz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5075109	X_5075109_SNP [dm3] X_5181076_SNP [dm6]	G	C	5.681e^-4	0.999	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other	TF binding site mE1_TFBS_HSA
2R	16094197	2R_16094197_SNP [dm3] 2R_20206692_SNP [dm6]	C	T	5.682e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3511586	3L_3511586_SNP [dm3] 3L_3511586_SNP [dm6]	G	A	5.697e^-4	0.999	SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8330321	3L_8330321_SNP [dm3] 3L_8337221_SNP [dm6]	T	C	5.711e^-4	0.999	INTRON Cpr66Cb
3L	6492744	3L_6492744_SNP [dm3] 3L_6499644_SNP [dm6]	A	T	5.713e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	4132854	2L_4132854_SNP [dm3] 2L_4132854_SNP [dm6]	C	T	5.731e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7442765	3L_7442765_SNP [dm3] 3L_7449665_SNP [dm6]	T	C	5.766e^-4	0.999	INTRON CG42458	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	21090825	2R_21090825_SNP [dm3] 2R_25203302_SNP [dm6]	G	A	5.770e^-4	0.999	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17432337	2R_17432337_SNP [dm3] 2R_21544832_SNP [dm6]	C	G	5.770e^-4	0.999	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11298335	2R_11298335_SNP [dm3] 2R_15410830_SNP [dm6]	C	T	5.771e^-4	0.999	INTRON CG43729
3L	16663987	3L_16663987_SNP [dm3] 3L_16670887_SNP [dm6]	A	C	5.780e^-4	0.999	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6989428	3L_6989428_SNP [dm3] 3L_6996328_SNP [dm6]	G	T	5.786e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
3L	14432583	3L_14432583_SNP [dm3] 3L_14439483_SNP [dm6]	A	T	5.793e^-4	0.999	INTRON bbg
3R	5013227	3R_5013227_SNP [dm3] 3R_9187505_SNP [dm6]	C	T	5.796e^-4	0.999	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18327526	3L_18327526_SNP [dm3] 3L_18334426_SNP [dm6]	T	C	5.799e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8239223	X_8239223_DEL [dm3] X_8345190_DEL [dm6]	CGCATAC	C	5.833e^-4	0.999	INTRON nAChRalpha3
2R	7695583	2R_7695583_SNP [dm3] 2R_11808078_SNP [dm6]	A	T	5.836e^-4	0.999	INTRON ths
2R	19054816	2R_19054816_SNP [dm3] 2R_23167293_SNP [dm6]	C	A	5.837e^-4	0.999	INTRON CG34371	TF binding site mE1_TFBS_chinmo
3R	14208149	3R_14208149_SNP [dm3] 3R_18382427_SNP [dm6]	C	T	5.838e^-4	0.999	NON_SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
X	19552456	X_19552456_SNP [dm3] X_19658423_SNP [dm6]	T	C	5.849e^-4	0.999	SYNONYMOUS_CODING CG14215	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	4687998	X_4687998_SNP [dm3] X_4793965_SNP [dm6]	T	C	5.871e^-4	0.999	INTERGENIC
3L	2024001	3L_2024001_SNP [dm3] 3L_2024001_SNP [dm6]	C	G	5.872e^-4	0.999	UPSTREAM CG42356 INTERGENIC
2R	3577058	2R_3577058_SNP [dm3] 2R_7689553_SNP [dm6]	T	C	5.882e^-4	0.999	INTRON CG1399
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	5.884e^-4	0.999	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	5.884e^-4	0.999	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	3512336	3L_3512336_SNP [dm3] 3L_3512336_SNP [dm6]	A	G	5.915e^-4	0.999	SYNONYMOUS_CODING ImpE2	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	13358407	2R_13358407_SNP [dm3] 2R_17470902_SNP [dm6]	C	T	5.917e^-4	0.999	INTRON qkr54B
X	11110734	X_11110734_SNP [dm3] X_11216701_SNP [dm6]	T	C	5.935e^-4	0.999	INTERGENIC
2L	14215605	2L_14215605_SNP [dm3] 2L_14215605_SNP [dm6]	C	T	5.937e^-4	0.999	INTRON Dyrk2
3L	8213590	3L_8213590_SNP [dm3] 3L_8220490_SNP [dm6]	G	T	5.948e^-4	0.999	INTERGENIC
3L	20053154	3L_20053154_SNP [dm3] 3L_20060054_SNP [dm6]	C	T	5.962e^-4	0.999	UTR_3_PRIME sNPF-R
3L	18199936	3L_18199936_SNP [dm3] 3L_18206836_SNP [dm6]	T	C	5.969e^-4	0.999	INTERGENIC
2R	4781421	2R_4781421_SNP [dm3] 2R_8893916_SNP [dm6]	A	G	5.974e^-4	0.999	DOWNSTREAM Dmn INTRON Sec31	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11165036	2R_11165036_SNP [dm3] 2R_15277531_SNP [dm6]	G	A	5.974e^-4	0.999	INTRON Trpm
X	8131205	X_8131205_SNP [dm3] X_8237172_SNP [dm6]	A	G	5.977e^-4	0.999	SPLICE_SITE_REGION sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21349217	3L_21349217_SNP [dm3] 3L_21356117_SNP [dm6]	G	C	5.980e^-4	0.999	INTRON CG12971
2R	11293211	2R_11293211_SNP [dm3] 2R_15405706_SNP [dm6]	T	C	5.999e^-4	0.999	DOWNSTREAM CR45020 INTRON CG43729
3L	4724951	3L_4724951_SNP [dm3] 3L_4724951_SNP [dm6]	C	G	6.015e^-4	0.999	INTRON RhoGEF64C
2R	17691334	2R_17691334_SNP [dm3] 2R_21803829_SNP [dm6]	G	C	6.016e^-4	0.999	EXON CR9284
2L	11669876	2L_11669876_SNP [dm3] 2L_11669876_SNP [dm6]	T	G	6.032e^-4	0.999	INTERGENIC
2R	9326433	2R_9326433_SNP [dm3] 2R_13438928_SNP [dm6]	A	G	6.042e^-4	0.999	SPLICE_SITE_REGION CG42321 UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	7256793	X_7256793_SNP [dm3] X_7362760_SNP [dm6]	T	G	6.048e^-4	0.999	INTRON CG1677 & 1 other
2R	4871614	2R_4871614_SNP [dm3] 2R_8984109_SNP [dm6]	T	G	6.052e^-4	0.999	INTRON CG8213	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8319762	3L_8319762_SNP [dm3] 3L_8326662_SNP [dm6]	T	A	6.054e^-4	0.999	INTRON CG34461
3L	16904614	3L_16904614_SNP [dm3] 3L_16911514_SNP [dm6]	T	C	6.076e^-4	0.999	SYNONYMOUS_CODING Lmpt UTR_5_PRIME Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3R	12934687	3R_12934687_SNP [dm3] 3R_17108965_SNP [dm6]	G	T	6.092e^-4	0.999	INTRON cher
2L	3812557	2L_3812557_SNP [dm3] 2L_3812557_SNP [dm6]	C	T	6.114e^-4	0.999	INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16047138	3R_16047138_SNP [dm3] 3R_20221416_SNP [dm6]	G	A	6.114e^-4	0.999	INTRON Nlg4
3R	9390299	3R_9390299_SNP [dm3] 3R_13564577_SNP [dm6]	A	T	6.116e^-4	0.999	INTERGENIC
2R	16488670	2R_16488670_SNP [dm3] 2R_20601165_SNP [dm6]	A	G	6.123e^-4	0.999	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13254086	2L_13254086_SNP [dm3] 2L_13254086_SNP [dm6]	T	C	6.125e^-4	0.999	INTRON CG31728
2R	13866447	2R_13866447_SNP [dm3] 2R_17978942_SNP [dm6]	G	C	6.138e^-4	0.999	INTRON dpr13
3L	10646063	3L_10646063_SNP [dm3] 3L_10652963_SNP [dm6]	T	C	6.151e^-4	0.999	INTRON CG32066	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14839741	3R_14839741_DEL [dm3] 3R_19014019_DEL [dm6]	CC	C	6.161e^-4	0.999	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6793803	3L_6793803_SNP [dm3] 3L_6800703_SNP [dm6]	C	A	6.165e^-4	0.999	INTERGENIC
3L	11552633	3L_11552633_SNP [dm3] 3L_11559533_SNP [dm6]	T	C	6.168e^-4	0.999	UPSTREAM Mob2 INTRON Mob2
3L	10623667	3L_10623667_SNP [dm3] 3L_10630567_SNP [dm6]	G	A	6.171e^-4	0.999	SYNONYMOUS_CODING CG42535 UPSTREAM CG42536 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run
3R	20606797	3R_20606797_SNP [dm3] 3R_24781075_SNP [dm6]	T	C	6.180e^-4	0.999	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	13343962	3L_13343962_SNP [dm3] 3L_13350862_SNP [dm6]	C	T	6.183e^-4	0.999	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15813611	2R_15813611_INS [dm3] 2R_19926106_INS [dm6]	T	TTTGG	6.190e^-4	0.999	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	21132367	2R_21132367_SNP [dm3] 2R_25244844_SNP [dm6]	T	C	6.191e^-4	0.999	INTRON CG9380	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr
2R	12513013	2R_12513013_SNP [dm3] 2R_16625508_SNP [dm6]	A	C	6.199e^-4	0.999	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
3L	13972055	3L_13972055_SNP [dm3] 3L_13978955_SNP [dm6]	C	T	6.200e^-4	0.999	UTR_3_PRIME CG17364
3L	7341373	3L_7341373_SNP [dm3] 3L_7348273_SNP [dm6]	C	A	6.204e^-4	0.999	UPSTREAM qm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	13338159	X_13338159_INS [dm3] X_13444126_INS [dm6]	A	AG	6.206e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	13933604	X_13933604_SNP [dm3] X_14039571_SNP [dm6]	A	C	6.219e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13972052	3L_13972052_SNP [dm3] 3L_13978952_SNP [dm6]	T	C	6.228e^-4	0.999	UTR_3_PRIME CG17364
3R	25876170	3R_25876170_SNP [dm3] 3R_30050448_SNP [dm6]	A	T	6.247e^-4	0.999	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14642521	2L_14642521_SNP [dm3] 2L_14642521_SNP [dm6]	A	C	6.249e^-4	0.999	INTRON osp
3L	16100585	3L_16100585_SNP [dm3] 3L_16107485_SNP [dm6]	C	T	6.268e^-4	0.999	SYNONYMOUS_CODING Zn72D UTR_3_PRIME Zn72D
3L	10642555	3L_10642555_SNP [dm3] 3L_10649455_SNP [dm6]	T	A	6.269e^-4	0.999	INTRON CG32066
3R	2801814	3R_2801814_SNP [dm3] 3R_6976092_SNP [dm6]	A	G	6.276e^-4	0.999	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2L	14992719	2L_14992719_SNP [dm3] 2L_14992719_SNP [dm6]	A	G	6.292e^-4	0.999	INTRON mol
2R	11941906	2R_11941906_SNP [dm3] 2R_16054401_SNP [dm6]	G	A	6.295e^-4	0.999	INTRON CG8405
X	6952903	X_6952903_SNP [dm3] X_7058870_SNP [dm6]	G	A	6.313e^-4	0.999	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	1604319	X_1604319_SNP [dm3] X_1710286_SNP [dm6]	C	G	6.315e^-4	0.999	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16337474	X_16337474_SNP [dm3] X_16443441_SNP [dm6]	A	T	6.315e^-4	0.999	INTRON rngo	TF binding site mE1_TFBS_cad
3L	7868551	3L_7868551_SNP [dm3] 3L_7875451_SNP [dm6]	T	G	6.318e^-4	0.999	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14641864	2L_14641864_SNP [dm3] 2L_14641864_SNP [dm6]	T	C	6.327e^-4	0.999	INTRON osp
2R	20919308	2R_20919308_SNP [dm3] 2R_25031785_SNP [dm6]	T	C	6.329e^-4	0.999	UPSTREAM Nplp1 DOWNSTREAM uzip INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20923095	2R_20923095_SNP [dm3] 2R_25035572_SNP [dm6]	G	T	6.329e^-4	0.999	INTRON Nplp1
3R	25454127	3R_25454127_SNP [dm3] 3R_29628405_SNP [dm6]	T	C	6.329e^-4	0.999	INTERGENIC
X	8422487	X_8422487_SNP [dm3] X_8528454_SNP [dm6]	T	A	6.333e^-4	0.999	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14978398	2L_14978398_SNP [dm3] 2L_14978398_SNP [dm6]	C	T	6.348e^-4	0.999	INTRON mol
2R	15213466	2R_15213466_SNP [dm3] 2R_19325961_SNP [dm6]	C	A	6.351e^-4	0.999	NON_SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2L	4681394	2L_4681394_SNP [dm3] 2L_4681394_SNP [dm6]	C	G	6.369e^-4	0.999	INTERGENIC
2L	18967041	2L_18967041_SNP [dm3] 2L_18967041_SNP [dm6]	G	T	6.370e^-4	0.999	INTRON Nak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21048020	2R_21048020_SNP [dm3] 2R_25160497_SNP [dm6]	A	C	6.375e^-4	0.999	INTERGENIC
2L	11912038	2L_11912038_SNP [dm3] 2L_11912038_SNP [dm6]	T	G	6.379e^-4	0.999	INTRON Pde1c
2L	14980582	2L_14980582_SNP [dm3] 2L_14980582_SNP [dm6]	G	T	6.397e^-4	0.999	INTRON mol
3L	5304173	3L_5304173_SNP [dm3] 3L_5311073_SNP [dm6]	G	A	6.402e^-4	0.999	INTERGENIC
2R	17309884	2R_17309884_SNP [dm3] 2R_21422379_SNP [dm6]	A	G	6.402e^-4	0.999	INTRON Sdc
2L	6359166	2L_6359166_SNP [dm3] 2L_6359166_SNP [dm6]	T	C	6.403e^-4	0.999	UPSTREAM CG9500 EXON CR44777
X	6497869	X_6497869_SNP [dm3] X_6603836_SNP [dm6]	G	C	6.411e^-4	0.999	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7959731	2R_7959731_SNP [dm3] 2R_12072226_SNP [dm6]	T	C	6.433e^-4	0.999	INTRON CG8888
2L	2066494	2L_2066494_SNP [dm3] 2L_2066494_SNP [dm6]	G	A	6.447e^-4	0.999	INTRON dpr3
3L	1379663	3L_1379663_SNP [dm3] 3L_1379663_SNP [dm6]	G	A	6.474e^-4	0.999	UPSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1379671	3L_1379671_SNP [dm3] 3L_1379671_SNP [dm6]	T	C	6.474e^-4	0.999	UPSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14126586	3L_14126586_SNP [dm3] 3L_14133486_SNP [dm6]	T	A	6.478e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21362560	X_21362560_SNP [dm3] X_21491533_SNP [dm6]	C	T	6.480e^-4	0.999	INTERGENIC
3L	12100366	3L_12100366_SNP [dm3] 3L_12107266_SNP [dm6]	A	G	6.482e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_sens
2L	2742230	2L_2742230_SNP [dm3] 2L_2742230_SNP [dm6]	A	G	6.487e^-4	0.999	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17439763	2R_17439763_SNP [dm3] 2R_21552258_SNP [dm6]	G	T	6.506e^-4	0.999	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9109508	3L_9109508_SNP [dm3] 3L_9116408_SNP [dm6]	A	G	6.522e^-4	0.999	INTRON bol
2R	15694043	2R_15694043_SNP [dm3] 2R_19806538_SNP [dm6]	T	C	6.530e^-4	0.999	INTERGENIC
3L	4572549	3L_4572549_SNP [dm3] 3L_4572549_SNP [dm6]	T	C	6.537e^-4	0.999	INTRON CG42540
3L	12101750	3L_12101750_SNP [dm3] 3L_12108650_SNP [dm6]	T	C	6.562e^-4	0.999	INTERGENIC
3L	21483082	3L_21483082_SNP [dm3] 3L_21489982_SNP [dm6]	T	G	6.565e^-4	0.999	NON_SYNONYMOUS_CODING Neu2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17735537	3L_17735537_DEL [dm3] 3L_17742437_DEL [dm6]	TTGCCAT	T	6.581e^-4	0.999	UTR_3_PRIME CG7460 INTRON Ccn	TF binding site mE1_TFBS_cad
2R	7043309	2R_7043309_SNP [dm3] 2R_11155804_SNP [dm6]	A	T	6.583e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	7043311	2R_7043311_INS [dm3] 2R_11155806_INS [dm6]	T	TT	6.583e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
2R	7043313	2R_7043313_SNP [dm3] 2R_11155808_SNP [dm6]	A	C	6.583e^-4	0.999	DOWNSTREAM CG13230 INTRON CG13229
X	13213613	X_13213613_SNP [dm3] X_13319580_SNP [dm6]	A	T	6.587e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	13685686	3L_13685686_SNP [dm3] 3L_13692586_SNP [dm6]	C	A	6.591e^-4	0.999	INTRON bru-3
2L	16956373	2L_16956373_SNP [dm3] 2L_16956373_SNP [dm6]	T	A	6.594e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4642935	X_4642935_SNP [dm3] X_4748902_SNP [dm6]	T	C	6.628e^-4	0.999	INTERGENIC
3L	14664980	3L_14664980_SNP [dm3] 3L_14671880_SNP [dm6]	G	A	6.635e^-4	0.999	UPSTREAM ome DOWNSTREAM CG43121 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4577552	3L_4577552_SNP [dm3] 3L_4577552_SNP [dm6]	C	A	6.644e^-4	0.999	INTRON CG42540
X	8957084	X_8957084_SNP [dm3] X_9063051_SNP [dm6]	C	T	6.645e^-4	0.999	INTRON CG15365
2R	20918809	2R_20918809_SNP [dm3] 2R_25031286_SNP [dm6]	T	G	6.696e^-4	0.999	UTR_3_PRIME uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20919214	2R_20919214_SNP [dm3] 2R_25031691_SNP [dm6]	T	G	6.696e^-4	0.999	UTR_3_PRIME uzip UPSTREAM Nplp1	TF binding site BDTNP1_TFBS_twi
2R	20921867	2R_20921867_SNP [dm3] 2R_25034344_SNP [dm6]	A	G	6.696e^-4	0.999	INTRON Nplp1	TF binding site mE1_TFBS_cnc
3R	21095149	3R_21095149_SNP [dm3] 3R_25269427_SNP [dm6]	C	T	6.704e^-4	0.999	UPSTREAM CG11889 & 1 other DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4433079	2L_4433079_SNP [dm3] 2L_4433079_SNP [dm6]	G	C	6.707e^-4	0.999	UPSTREAM CG34177 & 1 other INTRON CG15431
2L	11819255	2L_11819255_SNP [dm3] 2L_11819255_SNP [dm6]	A	G	6.730e^-4	0.999	INTRON Pde1c
3L	6334420	3L_6334420_SNP [dm3] 3L_6341320_SNP [dm6]	G	A	6.735e^-4	0.999	INTRON CG13300
3L	16159233	3L_16159233_SNP [dm3] 3L_16166133_SNP [dm6]	C	A	6.742e^-4	0.999	INTERGENIC
X	18293150	X_18293150_SNP [dm3] X_18399117_SNP [dm6]	T	C	6.748e^-4	0.999	DOWNSTREAM CG34328 INTRON CG32549	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2000644	2L_2000644_SNP [dm3] 2L_2000644_SNP [dm6]	T	C	6.760e^-4	0.999	INTRON CG33543 EXON CR43464
2R	16488692	2R_16488692_SNP [dm3] 2R_20601187_SNP [dm6]	T	C	6.762e^-4	0.999	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2939390	3L_2939390_SNP [dm3] 3L_2939390_SNP [dm6]	C	T	6.771e^-4	0.999	INTRON Shab
X	13213645	X_13213645_SNP [dm3] X_13319612_SNP [dm6]	T	A	6.791e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	13213709	X_13213709_SNP [dm3] X_13319676_SNP [dm6]	C	T	6.791e^-4	0.999	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	2747256	2L_2747256_SNP [dm3] 2L_2747256_SNP [dm6]	A	G	6.798e^-4	0.999	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5234968	3L_5234968_SNP [dm3] 3L_5241868_SNP [dm6]	A	G	6.815e^-4	0.999	INTRON shep
2L	4680536	2L_4680536_SNP [dm3] 2L_4680536_SNP [dm6]	G	T	6.818e^-4	0.999	INTERGENIC
2L	4680537	2L_4680537_SNP [dm3] 2L_4680537_SNP [dm6]	T	G	6.818e^-4	0.999	INTERGENIC
2L	4680541	2L_4680541_SNP [dm3] 2L_4680541_SNP [dm6]	A	T	6.818e^-4	0.999	INTERGENIC
2L	4680543	2L_4680543_SNP [dm3] 2L_4680543_SNP [dm6]	A	T	6.818e^-4	0.999	INTERGENIC
2L	4680548	2L_4680548_DEL [dm3] 2L_4680548_DEL [dm6]	AA	A	6.818e^-4	0.999	INTERGENIC
3R	22065935	3R_22065935_SNP [dm3] 3R_26240213_SNP [dm6]	A	T	6.829e^-4	0.999	INTRON CR42745
2R	6682981	2R_6682981_SNP [dm3] 2R_10795476_SNP [dm6]	G	T	6.831e^-4	0.999	INTRON CG33144
2L	16642641	2L_16642641_SNP [dm3] 2L_16642641_SNP [dm6]	A	G	6.833e^-4	0.999	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	16642651	2L_16642651_SNP [dm3] 2L_16642651_SNP [dm6]	C	T	6.833e^-4	0.999	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	10243482	3R_10243482_DEL [dm3] 3R_14417760_DEL [dm6]	AA	A	6.834e^-4	0.999	UPSTREAM natalisin INTRON cv-c
2R	6882003	2R_6882003_SNP [dm3] 2R_10994498_SNP [dm6]	G	C	6.838e^-4	0.999	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	18867308	3R_18867308_SNP [dm3] 3R_23041586_SNP [dm6]	T	C	6.838e^-4	0.999	UPSTREAM CG13838 DOWNSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10918985	3R_10918985_SNP [dm3] 3R_15093263_SNP [dm6]	C	A	6.844e^-4	0.999	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6315774	X_6315774_SNP [dm3] X_6421741_SNP [dm6]	G	A	6.854e^-4	0.999	INTERGENIC
2R	4779089	2R_4779089_SNP [dm3] 2R_8891584_SNP [dm6]	A	G	6.857e^-4	0.999	UPSTREAM Dmn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA
X	15196313	X_15196313_SNP [dm3] X_15302280_SNP [dm6]	T	C	6.857e^-4	0.999	INTRON gce	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8598228	3L_8598228_SNP [dm3] 3L_8605128_SNP [dm6]	C	T	6.863e^-4	0.999	UPSTREAM CG5989 INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3L	3512084	3L_3512084_SNP [dm3] 3L_3512084_SNP [dm6]	A	G	6.868e^-4	0.999	SYNONYMOUS_CODING ImpE2	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
3L	4076853	3L_4076853_SNP [dm3] 3L_4076853_SNP [dm6]	G	T	6.868e^-4	0.999	SYNONYMOUS_CODING Gad1
2R	21081364	2R_21081364_SNP [dm3] 2R_25193841_SNP [dm6]	A	T	6.880e^-4	0.999	INTRON CG9380
2L	13602221	2L_13602221_SNP [dm3] 2L_13602221_SNP [dm6]	G	A	6.881e^-4	0.999	INTRON kuz
3R	16819990	3R_16819990_SNP [dm3] 3R_20994268_SNP [dm6]	G	C	6.891e^-4	0.999	SYNONYMOUS_CODING Calx	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10034346	2R_10034346_SNP [dm3] 2R_14146841_SNP [dm6]	C	T	6.902e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5403038	2L_5403038_SNP [dm3] 2L_5403038_SNP [dm6]	T	A	6.908e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16311566	2R_16311566_SNP [dm3] 2R_20424061_SNP [dm6]	G	T	6.925e^-4	0.999	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14076130	2L_14076130_SNP [dm3] 2L_14076130_SNP [dm6]	C	A	6.940e^-4	0.999	INTRON nAChRalpha5
2L	1651067	2L_1651067_SNP [dm3] 2L_1651067_SNP [dm6]	G	T	6.942e^-4	0.999	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5462754	X_5462754_SNP [dm3] X_5568721_SNP [dm6]	C	A	6.950e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	14445647	3L_14445647_SNP [dm3] 3L_14452547_SNP [dm6]	G	C	6.956e^-4	0.999	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	5402967	2L_5402967_SNP [dm3] 2L_5402967_SNP [dm6]	T	C	6.956e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	16788457	3R_16788457_DEL [dm3] 3R_20962735_DEL [dm6]	GATTTTAAAAG...	G	6.957e^-4	0.999	INTRON Atpalpha
3R	25660310	3R_25660310_SNP [dm3] 3R_29834588_SNP [dm6]	C	T	6.958e^-4	0.999	SYNONYMOUS_CODING Atg16 UPSTREAM Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3380761	X_3380761_SNP [dm3] X_3486728_SNP [dm6]	T	C	6.965e^-4	0.999	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	8876255	2R_8876255_SNP [dm3] 2R_12988750_SNP [dm6]	A	G	6.987e^-4	0.999	INTERGENIC
2R	7111471	2R_7111471_SNP [dm3] 2R_11223966_SNP [dm6]	T	A	6.994e^-4	0.999	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3L	19079711	3L_19079711_SNP [dm3] 3L_19086611_SNP [dm6]	C	T	7.000e^-4	0.999	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10333038	2R_10333038_DEL [dm3] 2R_14445533_DEL [dm6]	CC	C	7.003e^-4	0.999	INTRON Oaz
2L	587682	2L_587682_SNP [dm3] 2L_587682_SNP [dm6]	C	T	7.018e^-4	0.999	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	19698195	3R_19698195_SNP [dm3] 3R_23872473_SNP [dm6]	T	C	7.022e^-4	0.999	INTRON Pli	TF binding site mE1_TFBS_HSA
2L	2530894	2L_2530894_SNP [dm3] 2L_2530894_SNP [dm6]	G	C	7.024e^-4	0.999	INTERGENIC
3L	20854305	3L_20854305_SNP [dm3] 3L_20861205_SNP [dm6]	T	C	7.040e^-4	0.999	INTRON CG32432
3L	19101629	3L_19101629_SNP [dm3] 3L_19108529_SNP [dm6]	T	G	7.055e^-4	0.999	INTRON CG14082	TF binding site mE1_TFBS_inv
2R	10618422	2R_10618422_SNP [dm3] 2R_14730917_SNP [dm6]	A	C	7.072e^-4	0.999	INTERGENIC
2R	14996174	2R_14996174_SNP [dm3] 2R_19108669_SNP [dm6]	C	T	7.083e^-4	0.999	INTRON 5-HT1A
3R	13567702	3R_13567702_SNP [dm3] 3R_17741980_SNP [dm6]	A	T	7.086e^-4	0.999	INTRON TyrRII
2R	21100903	2R_21100903_SNP [dm3] 2R_25213380_SNP [dm6]	T	C	7.094e^-4	0.999	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi
3L	20318739	3L_20318739_SNP [dm3] 3L_20325639_SNP [dm6]	C	A	7.095e^-4	0.999	INTERGENIC	transposable element FlyBase
3L	2118051	3L_2118051_SNP [dm3] 3L_2118051_SNP [dm6]	C	T	7.115e^-4	0.999	INTRON zormin
2R	16616636	2R_16616636_SNP [dm3] 2R_20729131_SNP [dm6]	A	T	7.133e^-4	0.999	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9309367	2R_9309367_SNP [dm3] 2R_13421862_SNP [dm6]	T	A	7.134e^-4	0.999	SYNONYMOUS_CODING CG42321
2R	12603802	2R_12603802_SNP [dm3] 2R_16716297_SNP [dm6]	T	C	7.148e^-4	0.999	INTRON CG30463
2L	11669845	2L_11669845_SNP [dm3] 2L_11669845_SNP [dm6]	C	T	7.151e^-4	0.999	INTERGENIC
2R	9042523	2R_9042523_SNP [dm3] 2R_13155018_SNP [dm6]	C	T	7.164e^-4	0.999	INTRON TppII
2R	9042573	2R_9042573_SNP [dm3] 2R_13155068_SNP [dm6]	A	T	7.164e^-4	0.999	SYNONYMOUS_CODING TppII
3R	7824984	3R_7824984_SNP [dm3] 3R_11999262_SNP [dm6]	G	A	7.191e^-4	0.999	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

MatingLatency phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results