DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.650e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1607 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14896297	3L_14896297_SNP [dm3] 3L_14903197_SNP [dm6]	G	T	3.693e^-6	0.984	UPSTREAM DCX-EMAP INTERGENIC
3R	14910589	3R_14910589_SNP [dm3] 3R_19084867_SNP [dm6]	A	G	3.982e^-6	0.984	INTRON cdi
2L	21862168	2L_21862168_SNP [dm3] 2L_21862168_SNP [dm6]	G	C	5.718e^-6	0.984	INTRON CR44917
3L	18629836	3L_18629836_SNP [dm3] 3L_18636736_SNP [dm6]	G	A	5.753e^-6	0.984	INTRON MYPT-75D
2L	10493203	2L_10493203_SNP [dm3] 2L_10493203_SNP [dm6]	A	G	5.962e^-6	0.984	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18072035	2R_18072035_SNP [dm3] 2R_22184530_SNP [dm6]	C	T	6.346e^-6	0.984	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18072045	2R_18072045_SNP [dm3] 2R_22184540_SNP [dm6]	C	T	6.346e^-6	0.984	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1983727	2L_1983727_SNP [dm3] 2L_1983727_SNP [dm6]	G	A	7.672e^-6	0.984	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
2L	1983847	2L_1983847_SNP [dm3] 2L_1983847_SNP [dm6]	C	T	7.672e^-6	0.984	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
2L	1983709	2L_1983709_SNP [dm3] 2L_1983709_SNP [dm6]	C	T	7.826e^-6	0.984	SYNONYMOUS_CODING CG7289 DOWNSTREAM Got2	TF binding site mE1_TFBS_sens
X	7068014	X_7068014_SNP [dm3] X_7173981_SNP [dm6]	C	T	8.059e^-6	0.984	INTRON CG9650 & 1 other
X	7068035	X_7068035_SNP [dm3] X_7174002_SNP [dm6]	G	A	8.059e^-6	0.984	INTRON CG9650 & 1 other
X	20741689	X_20741689_SNP [dm3] X_20870662_SNP [dm6]	A	C	9.381e^-6	0.984	INTRON shakB
X	7068102	X_7068102_SNP [dm3] X_7174069_SNP [dm6]	T	C	9.621e^-6	0.984	INTRON CG9650 & 1 other
2R	9233609	2R_9233609_SNP [dm3] 2R_13346104_SNP [dm6]	T	G	1.100e^-5	0.984	INTRON CR44206
X	14760238	X_14760238_SNP [dm3] X_14866205_SNP [dm6]	T	C	1.104e^-5	0.984	UTR_5_PRIME CG9518 INTRON Flo2
2R	16859928	2R_16859928_SNP [dm3] 2R_20972423_SNP [dm6]	G	C	1.115e^-5	0.984	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10403886	3L_10403886_SNP [dm3] 3L_10410786_SNP [dm6]	T	G	1.199e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
3L	10403889	3L_10403889_SNP [dm3] 3L_10410789_SNP [dm6]	A	G	1.199e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
3R	18932682	3R_18932682_SNP [dm3] 3R_23106960_SNP [dm6]	C	T	1.236e^-5	0.984	INTRON CG13830
3L	19283281	3L_19283281_SNP [dm3] 3L_19290181_SNP [dm6]	G	C	1.281e^-5	0.984	INTRON Gbs-76A
3L	10403783	3L_10403783_SNP [dm3] 3L_10410683_SNP [dm6]	G	C	1.401e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14976234	2R_14976234_SNP [dm3] 2R_19088729_SNP [dm6]	T	C	1.526e^-5	0.984	INTRON 5-HT1A
3L	6963006	3L_6963006_SNP [dm3] 3L_6969906_SNP [dm6]	C	T	1.663e^-5	0.984	SYNONYMOUS_CODING CG9953 UPSTREAM Mis12	TF binding site mE1_TFBS_ttk
2L	21153694	2L_21153694_SNP [dm3] 2L_21153694_SNP [dm6]	G	C	1.755e^-5	0.984	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19014447	3L_19014447_SNP [dm3] 3L_19021347_SNP [dm6]	G	T	1.852e^-5	0.984	INTRON nkd
2L	2204413	2L_2204413_SNP [dm3] 2L_2204413_SNP [dm6]	A	G	1.987e^-5	0.984	NON_SYNONYMOUS_CODING CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10404933	3L_10404933_SNP [dm3] 3L_10411833_SNP [dm6]	T	A	2.145e^-5	0.984	UPSTREAM CR44543 & 1 other DOWNSTREAM CR43990 INTERGENIC
3R	22247251	3R_22247251_DEL [dm3] 3R_26421529_DEL [dm6]	TCTGCTT	G	2.145e^-5	0.984	INTERGENIC
3R	22247259	3R_22247259_SNP [dm3] 3R_26421537_SNP [dm6]	T	C	2.145e^-5	0.984	INTERGENIC
3L	10403943	3L_10403943_SNP [dm3] 3L_10410843_SNP [dm6]	A	T	2.155e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
2R	11038704	2R_11038704_SNP [dm3] 2R_15151199_SNP [dm6]	T	C	2.238e^-5	0.984	INTERGENIC
3R	18932567	3R_18932567_SNP [dm3] 3R_23106845_SNP [dm6]	G	T	2.439e^-5	0.984	INTRON CG13830
3L	10403914	3L_10403914_SNP [dm3] 3L_10410814_SNP [dm6]	G	A	2.506e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
3R	16713554	3R_16713554_SNP [dm3] 3R_20887832_SNP [dm6]	G	C	2.607e^-5	0.984	INTERGENIC
3R	16713701	3R_16713701_SNP [dm3] 3R_20887979_SNP [dm6]	C	T	2.607e^-5	0.984	INTERGENIC
3L	12875560	3L_12875560_SNP [dm3] 3L_12882460_SNP [dm6]	G	A	2.675e^-5	0.984	INTERGENIC
X	16847551	X_16847551_SNP [dm3] X_16953518_SNP [dm6]	A	G	2.717e^-5	0.984	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5865086	X_5865086_SNP [dm3] X_5971053_SNP [dm6]	C	G	2.928e^-5	0.984	INTRON Grip
X	10985102	X_10985102_SNP [dm3] X_11091069_SNP [dm6]	G	A	2.944e^-5	0.984	SYNONYMOUS_CODING CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6963971	3L_6963971_SNP [dm3] 3L_6970871_SNP [dm6]	G	A	3.098e^-5	0.984	DOWNSTREAM CG10063 INTRON CG9953	TF binding site mE1_TFBS_sens
3R	13786655	3R_13786655_SNP [dm3] 3R_17960933_SNP [dm6]	C	T	3.178e^-5	0.984	INTRON cpo
2L	21743319	2L_21743319_SNP [dm3] 2L_21743319_SNP [dm6]	T	A	3.202e^-5	0.984	INTRON step	transposable element FlyBase
3L	10404923	3L_10404923_SNP [dm3] 3L_10411823_SNP [dm6]	T	C	3.261e^-5	0.984	UPSTREAM CR44543 & 1 other DOWNSTREAM CR43990 INTERGENIC
3L	9472255	3L_9472255_SNP [dm3] 3L_9479155_SNP [dm6]	T	A	3.268e^-5	0.984	SYNONYMOUS_CODING Jarid2
3L	9472264	3L_9472264_SNP [dm3] 3L_9479164_SNP [dm6]	T	C	3.268e^-5	0.984	SYNONYMOUS_CODING Jarid2
3L	9472268	3L_9472268_SNP [dm3] 3L_9479168_SNP [dm6]	A	G	3.268e^-5	0.984	NON_SYNONYMOUS_CODING Jarid2
3L	9472271	3L_9472271_SNP [dm3] 3L_9479171_SNP [dm6]	A	G	3.268e^-5	0.984	NON_SYNONYMOUS_CODING Jarid2
3L	9472277	3L_9472277_SNP [dm3] 3L_9479177_SNP [dm6]	G	C	3.268e^-5	0.984	NON_SYNONYMOUS_CODING Jarid2
3L	9472297	3L_9472297_SNP [dm3] 3L_9479197_SNP [dm6]	C	T	3.268e^-5	0.984	SYNONYMOUS_CODING Jarid2
3L	9818108	3L_9818108_SNP [dm3] 3L_9825008_SNP [dm6]	C	G	3.476e^-5	0.984	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
X	11925883	X_11925883_SNP [dm3] X_12031850_SNP [dm6]	C	G	3.498e^-5	0.984	UPSTREAM Cyp311a1 & 1 other INTERGENIC
3R	18932685	3R_18932685_SNP [dm3] 3R_23106963_SNP [dm6]	A	G	3.626e^-5	0.984	INTRON CG13830
3L	5423539	3L_5423539_SNP [dm3] 3L_5430439_SNP [dm6]	T	G	3.667e^-5	0.984	INTRON CG34391
2R	10400789	2R_10400789_SNP [dm3] 2R_14513284_SNP [dm6]	T	A	3.680e^-5	0.984	UPSTREAM CG30197 DOWNSTREAM Asx INTRON Cpr51A
2R	10400808	2R_10400808_SNP [dm3] 2R_14513303_SNP [dm6]	C	T	3.680e^-5	0.984	UPSTREAM CG30197 DOWNSTREAM Asx INTRON Cpr51A
2L	18225662	2L_18225662_SNP [dm3] 2L_18225662_SNP [dm6]	A	C	4.188e^-5	0.984	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2649533	X_2649533_DEL [dm3] X_2755500_DEL [dm6]	ATATG	A	4.202e^-5	0.984	INTRON kirre
3L	12875562	3L_12875562_SNP [dm3] 3L_12882462_SNP [dm6]	G	T	4.203e^-5	0.984	INTERGENIC
3R	23293164	3R_23293164_SNP [dm3] 3R_27467442_SNP [dm6]	T	C	4.235e^-5	0.984	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18932688	3R_18932688_SNP [dm3] 3R_23106966_SNP [dm6]	G	C	4.409e^-5	0.984	INTRON CG13830
X	7068083	X_7068083_SNP [dm3] X_7174050_SNP [dm6]	A	G	4.461e^-5	0.984	INTRON CG9650 & 1 other
3L	10403993	3L_10403993_INS [dm3] 3L_10410893_INS [dm6]	A	AAATGCATTG	4.650e^-5	0.984	EXON CR44543
2L	7189772	2L_7189772_DEL [dm3] 2L_7189772_DEL [dm6]	TCGGAT	T	4.754e^-5	0.984	UTR_5_PRIME CG4496 DOWNSTREAM CG4497
3R	13531456	3R_13531456_SNP [dm3] 3R_17705734_SNP [dm6]	T	C	4.849e^-5	0.984	INTRON osa
3L	9818060	3L_9818060_SNP [dm3] 3L_9824960_SNP [dm6]	G	A	5.026e^-5	0.984	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2L	12652370	2L_12652370_SNP [dm3] 2L_12652370_SNP [dm6]	A	T	5.106e^-5	0.984	INTERGENIC
3R	13420089	3R_13420089_SNP [dm3] 3R_17594367_SNP [dm6]	T	C	5.127e^-5	0.984	UPSTREAM CG7587 & 1 other INTERGENIC
3L	10403963	3L_10403963_SNP [dm3] 3L_10410863_SNP [dm6]	T	C	5.169e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
X	7068018	X_7068018_SNP [dm3] X_7173985_SNP [dm6]	A	G	5.171e^-5	0.984	INTRON CG9650 & 1 other
X	12139773	X_12139773_DEL [dm3] X_12245740_DEL [dm6]	AGTGGAAGAAATGAAAGGAG...	G	5.253e^-5	0.984	INTRON Ten-a
X	15520967	X_15520967_SNP [dm3] X_15626934_SNP [dm6]	C	T	5.265e^-5	0.984	UPSTREAM sog INTRON sog	TF binding site BDTNP1_TFBS_twi
2R	12329552	2R_12329552_SNP [dm3] 2R_16442047_SNP [dm6]	T	C	5.271e^-5	0.984	INTERGENIC
2R	13136282	2R_13136282_SNP [dm3] 2R_17248777_SNP [dm6]	T	A	5.271e^-5	0.984	INTRON mbl
3L	6016813	3L_6016813_SNP [dm3] 3L_6023713_SNP [dm6]	C	T	5.271e^-5	0.984	INTRON PVRAP
3L	6016822	3L_6016822_SNP [dm3] 3L_6023722_SNP [dm6]	T	A	5.271e^-5	0.984	INTRON PVRAP
X	18966536	X_18966536_SNP [dm3] X_19072503_SNP [dm6]	C	A	5.271e^-5	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10823250	3L_10823250_SNP [dm3] 3L_10830150_SNP [dm6]	A	T	5.294e^-5	0.984	INTERGENIC
3R	9459446	3R_9459446_SNP [dm3] 3R_13633724_SNP [dm6]	A	G	5.328e^-5	0.984	SYNONYMOUS_CODING CG10841
3L	5423546	3L_5423546_SNP [dm3] 3L_5430446_SNP [dm6]	A	T	5.394e^-5	0.984	INTRON CG34391
3L	5423552	3L_5423552_SNP [dm3] 3L_5430452_SNP [dm6]	T	C	5.398e^-5	0.984	INTRON CG34391
2L	2202533	2L_2202533_SNP [dm3] 2L_2202533_SNP [dm6]	T	A	5.401e^-5	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6960431	3L_6960431_SNP [dm3] 3L_6967331_SNP [dm6]	A	G	5.474e^-5	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960436	3L_6960436_SNP [dm3] 3L_6967336_SNP [dm6]	A	T	5.474e^-5	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960445	3L_6960445_SNP [dm3] 3L_6967345_SNP [dm6]	A	G	5.474e^-5	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6639108	3R_6639108_SNP [dm3] 3R_10813386_SNP [dm6]	T	G	5.598e^-5	0.984	DOWNSTREAM CG14693 INTRON CG14693
3R	24775991	3R_24775991_INS [dm3] 3R_28950269_INS [dm6]	T	TCAT	5.614e^-5	0.984	INTRON CG14521
3R	24775995	3R_24775995_SNP [dm3] 3R_28950273_SNP [dm6]	T	C	5.614e^-5	0.984	INTRON CG14521
3L	18141688	3L_18141688_INS [dm3] 3L_18148588_INS [dm6]	A	AA	5.648e^-5	0.984	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16805004	X_16805004_SNP [dm3] X_16910971_SNP [dm6]	A	G	5.701e^-5	0.984	INTRON CR44754
3R	18932518	3R_18932518_SNP [dm3] 3R_23106796_SNP [dm6]	G	A	5.713e^-5	0.984	INTRON CG13830
3L	6016790	3L_6016790_DEL [dm3] 3L_6023690_DEL [dm6]	TGTGTTATGTTT...	T	5.962e^-5	0.984	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl
3L	16741610	3L_16741610_SNP [dm3] 3L_16748510_SNP [dm6]	T	C	5.973e^-5	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9459467	3R_9459467_SNP [dm3] 3R_13633745_SNP [dm6]	C	G	5.978e^-5	0.984	INTRON CG10841
2R	12490699	2R_12490699_SNP [dm3] 2R_16603194_SNP [dm6]	A	T	6.057e^-5	0.984	INTRON CG8303
3R	24976436	3R_24976436_SNP [dm3] 3R_29150714_SNP [dm6]	C	G	6.238e^-5	0.984	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	6639101	3R_6639101_SNP [dm3] 3R_10813379_SNP [dm6]	G	T	6.283e^-5	0.984	DOWNSTREAM CG14693 INTRON CG14693
2L	3188550	2L_3188550_SNP [dm3] 2L_3188550_SNP [dm6]	C	A	6.337e^-5	0.984	INTRON CG34393
2L	19278818	2L_19278818_INS [dm3] 2L_19278818_INS [dm6]	T	TT	6.423e^-5	0.984	INTERGENIC
3L	18203079	3L_18203079_SNP [dm3] 3L_18209979_SNP [dm6]	T	G	6.499e^-5	0.984	INTERGENIC
X	6640218	X_6640218_SNP [dm3] X_6746185_SNP [dm6]	C	T	6.535e^-5	0.984	DOWNSTREAM CR44964 EXON CR44895
3L	4958307	3L_4958307_SNP [dm3] 3L_4958307_SNP [dm6]	T	G	6.595e^-5	0.984	INTRON Con
2R	9236179	2R_9236179_SNP [dm3] 2R_13348674_SNP [dm6]	C	T	6.670e^-5	0.984	INTRON CR44206
2R	17091336	2R_17091336_SNP [dm3] 2R_21203831_SNP [dm6]	C	T	6.698e^-5	0.984	INTRON Glycogenin & 1 other
3L	16424792	3L_16424792_SNP [dm3] 3L_16431692_SNP [dm6]	T	G	6.819e^-5	0.984	INTRON CG33158 & 1 other
2R	19562150	2R_19562150_SNP [dm3] 2R_23674627_SNP [dm6]	G	A	6.857e^-5	0.984	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8622412	X_8622412_SNP [dm3] X_8728379_SNP [dm6]	G	A	6.878e^-5	0.984	INTERGENIC
2R	18069143	2R_18069143_SNP [dm3] 2R_22181638_SNP [dm6]	G	T	6.933e^-5	0.984	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18686454	2R_18686454_SNP [dm3] 2R_22798949_SNP [dm6]	G	T	6.951e^-5	0.984	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6965399	3L_6965399_SNP [dm3] 3L_6972299_SNP [dm6]	T	C	6.955e^-5	0.984	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
3L	12397102	3L_12397102_SNP [dm3] 3L_12404002_SNP [dm6]	G	A	7.056e^-5	0.984	UTR_3_PRIME CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9839853	2L_9839853_SNP [dm3] 2L_9839853_SNP [dm6]	G	A	7.260e^-5	0.984	INTRON nAChRalpha6
2R	11853458	2R_11853458_SNP [dm3] 2R_15965953_SNP [dm6]	C	T	7.327e^-5	0.984	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10223547	X_10223547_SNP [dm3] X_10329514_SNP [dm6]	T	C	7.349e^-5	0.984	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other
X	10224427	X_10224427_SNP [dm3] X_10330394_SNP [dm6]	C	G	7.349e^-5	0.984	NON_SYNONYMOUS_CODING CG15306 UPSTREAM Gip
3R	25961552	3R_25961552_SNP [dm3] 3R_30135830_SNP [dm6]	T	C	7.389e^-5	0.984	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14556875	3R_14556875_SNP [dm3] 3R_18731153_SNP [dm6]	G	A	7.437e^-5	0.984	UTR_3_PRIME Cha
3L	5610704	3L_5610704_DEL [dm3] 3L_5617604_DEL [dm6]	AA	A	7.487e^-5	0.984	INTERGENIC
2R	17309771	2R_17309771_SNP [dm3] 2R_21422266_SNP [dm6]	C	G	7.568e^-5	0.984	INTRON Sdc
2R	6579268	2R_6579268_SNP [dm3] 2R_10691763_SNP [dm6]	C	T	7.578e^-5	0.984	INTRON stan	enhancer mE1_CBP_Enhancers
2L	10169265	2L_10169265_SNP [dm3] 2L_10169265_SNP [dm6]	C	T	7.615e^-5	0.984	INTRON CG44153
3L	6961216	3L_6961216_SNP [dm3] 3L_6968116_SNP [dm6]	G	A	7.631e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961241	3L_6961241_SNP [dm3] 3L_6968141_SNP [dm6]	C	T	7.631e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961246	3L_6961246_DEL [dm3] 3L_6968146_DEL [dm6]	GGG	G	7.631e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961302	3L_6961302_SNP [dm3] 3L_6968202_SNP [dm6]	C	T	7.631e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961308	3L_6961308_SNP [dm3] 3L_6968208_SNP [dm6]	G	T	7.631e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	6961322	3L_6961322_SNP [dm3] 3L_6968222_SNP [dm6]	T	C	7.631e^-5	0.984	NON_SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
3L	6963832	3L_6963832_SNP [dm3] 3L_6970732_SNP [dm6]	T	C	7.631e^-5	0.984	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6963930	3L_6963930_SNP [dm3] 3L_6970830_SNP [dm6]	T	C	7.631e^-5	0.984	DOWNSTREAM CG10063 INTRON CG9953	TF binding site mE1_TFBS_sens
3L	15246817	3L_15246817_SNP [dm3] 3L_15253717_SNP [dm6]	A	T	7.652e^-5	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10403743	3L_10403743_SNP [dm3] 3L_10410643_SNP [dm6]	A	T	7.736e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
3R	24521871	3R_24521871_SNP [dm3] 3R_28696149_SNP [dm6]	A	G	7.863e^-5	0.984	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	2444514	X_2444514_SNP [dm3] X_2550481_SNP [dm6]	T	A	7.888e^-5	0.984	INTERGENIC
X	2445213	X_2445213_SNP [dm3] X_2551180_SNP [dm6]	A	G	7.888e^-5	0.984	INTERGENIC
X	2447247	X_2447247_SNP [dm3] X_2553214_SNP [dm6]	G	A	7.888e^-5	0.984	UPSTREAM Pdfr INTRON Pdfr
X	2447249	X_2447249_SNP [dm3] X_2553216_SNP [dm6]	T	G	7.888e^-5	0.984	UPSTREAM Pdfr INTRON Pdfr
X	2447361	X_2447361_SNP [dm3] X_2553328_SNP [dm6]	T	C	7.888e^-5	0.984	UPSTREAM Pdfr INTRON Pdfr
X	2447449	X_2447449_SNP [dm3] X_2553416_SNP [dm6]	G	T	7.888e^-5	0.984	UPSTREAM Pdfr INTRON Pdfr
X	2448285	X_2448285_DEL [dm3] X_2554252_DEL [dm6]	TTCCAACGCGAGTTTGAAG...	A	7.888e^-5	0.984	SPLICE_SITE_ACCEPTOR Pdfr SPLICE_SITE_REGION Pdfr UTR_5_PRIME Pdfr INTRON Pdfr
X	2448306	X_2448306_SNP [dm3] X_2554273_SNP [dm6]	A	T	7.888e^-5	0.984	UTR_5_PRIME Pdfr
X	2448318	X_2448318_SNP [dm3] X_2554285_SNP [dm6]	A	T	7.888e^-5	0.984	UTR_5_PRIME Pdfr
X	2448795	X_2448795_INS [dm3] X_2554762_INS [dm6]	C	CAACCATC	7.888e^-5	0.984	INTRON Pdfr
3L	15265407	3L_15265407_SNP [dm3] 3L_15272307_SNP [dm6]	G	T	7.962e^-5	0.984	INTERGENIC
X	16919262	X_16919262_SNP [dm3] X_17025229_SNP [dm6]	C	T	8.137e^-5	0.984	INTRON CG45002
2R	19359578	2R_19359578_SNP [dm3] 2R_23472055_SNP [dm6]	A	T	8.159e^-5	0.984	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359599	2R_19359599_SNP [dm3] 2R_23472076_SNP [dm6]	T	C	8.159e^-5	0.984	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359601	2R_19359601_SNP [dm3] 2R_23472078_SNP [dm6]	A	T	8.159e^-5	0.984	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359606	2R_19359606_SNP [dm3] 2R_23472083_SNP [dm6]	T	A	8.159e^-5	0.984	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19359617	2R_19359617_SNP [dm3] 2R_23472094_SNP [dm6]	G	T	8.159e^-5	0.984	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
X	5457645	X_5457645_SNP [dm3] X_5563612_SNP [dm6]	C	T	8.293e^-5	0.984	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	10985021	X_10985021_SNP [dm3] X_11090988_SNP [dm6]	G	C	8.342e^-5	0.984	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo
X	10985033	X_10985033_SNP [dm3] X_11091000_SNP [dm6]	C	G	8.342e^-5	0.984	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo
X	10985240	X_10985240_SNP [dm3] X_11091207_SNP [dm6]	A	T	8.342e^-5	0.984	DOWNSTREAM Vago INTRON CG2076 EXON CR45604	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10403929	3L_10403929_SNP [dm3] 3L_10410829_SNP [dm6]	T	A	8.349e^-5	0.984	DOWNSTREAM CR44543 INTERGENIC
2R	14372117	2R_14372117_SNP [dm3] 2R_18484612_SNP [dm6]	G	T	8.356e^-5	0.984	INTRON CG30116
3L	14004432	3L_14004432_SNP [dm3] 3L_14011332_SNP [dm6]	C	T	8.511e^-5	0.984	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10525923	2L_10525923_SNP [dm3] 2L_10525923_SNP [dm6]	C	T	8.621e^-5	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9818036	3L_9818036_SNP [dm3] 3L_9824936_SNP [dm6]	T	C	8.631e^-5	0.984	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2R	15587315	2R_15587315_SNP [dm3] 2R_19699810_SNP [dm6]	C	G	8.705e^-5	0.984	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3R	24521814	3R_24521814_INS [dm3] 3R_28696092_INS [dm6]	G	GCCTTTTTATG...	8.865e^-5	0.984	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15400711	2R_15400711_SNP [dm3] 2R_19513206_SNP [dm6]	T	C	8.873e^-5	0.984	SYNONYMOUS_CODING Ir56d
3R	14180623	3R_14180623_SNP [dm3] 3R_18354901_SNP [dm6]	T	C	8.893e^-5	0.984	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16864365	2R_16864365_SNP [dm3] 2R_20976860_SNP [dm6]	T	G	9.039e^-5	0.984	UTR_3_PRIME CG34115 UPSTREAM CG9344 DOWNSTREAM CG15650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9686405	2L_9686405_SNP [dm3] 2L_9686405_SNP [dm6]	G	A	9.064e^-5	0.984	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4405551	X_4405551_SNP [dm3] X_4511518_SNP [dm6]	T	G	9.307e^-5	0.984	INTRON CR32773	silencer mE1_HDAC_PRE
3L	14896991	3L_14896991_SNP [dm3] 3L_14903891_SNP [dm6]	A	G	9.434e^-5	0.984	UTR_5_PRIME DCX-EMAP
2R	11976858	2R_11976858_SNP [dm3] 2R_16089353_SNP [dm6]	C	T	9.453e^-5	0.984	INTRON Dg
3R	14718121	3R_14718121_SNP [dm3] 3R_18892399_SNP [dm6]	G	A	9.458e^-5	0.984	INTERGENIC
2L	10479853	2L_10479853_SNP [dm3] 2L_10479853_SNP [dm6]	T	A	9.458e^-5	0.984	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2L	10479854	2L_10479854_SNP [dm3] 2L_10479854_SNP [dm6]	A	G	9.458e^-5	0.984	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3L	6961226	3L_6961226_INS [dm3] 3L_6968126_INS [dm6]	A	AA	9.498e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	16190470	3L_16190470_SNP [dm3] 3L_16197370_SNP [dm6]	T	A	9.640e^-5	0.984	UPSTREAM CG33687 & 1 other INTERGENIC
3R	8999285	3R_8999285_SNP [dm3] 3R_13173563_SNP [dm6]	G	T	9.710e^-5	0.984	INTERGENIC
2R	17795824	2R_17795824_SNP [dm3] 2R_21908319_SNP [dm6]	C	A	9.770e^-5	0.984	INTRON Fili	TF binding site mE1_TFBS_sens
3L	6961297	3L_6961297_SNP [dm3] 3L_6968197_SNP [dm6]	T	C	9.832e^-5	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	16485050	3L_16485050_SNP [dm3] 3L_16491950_SNP [dm6]	T	C	9.869e^-5	0.984	UTR_3_PRIME CG42514 & 1 other INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2446427	X_2446427_DEL [dm3] X_2552394_DEL [dm6]	AAACA	A	1.007e^-4	0.984	INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6256781	2R_6256781_SNP [dm3] 2R_10369276_SNP [dm6]	G	A	1.009e^-4	0.984	INTRON CG42732	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18069621	2R_18069621_SNP [dm3] 2R_22182116_SNP [dm6]	C	T	1.026e^-4	0.984	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	18070432	2R_18070432_SNP [dm3] 2R_22182927_SNP [dm6]	T	C	1.026e^-4	0.984	UPSTREAM MED16 & 1 other DOWNSTREAM CG11275 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	20175043	3L_20175043_SNP [dm3] 3L_20181943_SNP [dm6]	C	G	1.032e^-4	0.984	INTRON CG42674
3L	5241815	3L_5241815_SNP [dm3] 3L_5248715_SNP [dm6]	T	A	1.044e^-4	0.984	UPSTREAM shep INTRON shep
3L	1323720	3L_1323720_SNP [dm3] 3L_1323720_SNP [dm6]	G	C	1.051e^-4	0.984	UPSTREAM CG9184 & 1 other INTRON Myo61F & 1 other
X	16805278	X_16805278_SNP [dm3] X_16911245_SNP [dm6]	G	A	1.073e^-4	0.984	INTRON CR44754
X	7500490	X_7500490_INS [dm3] X_7606457_INS [dm6]	T	TGGAAGTT	1.077e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6961301	3L_6961301_SNP [dm3] 3L_6968201_SNP [dm6]	C	T	1.087e^-4	0.984	UTR_3_PRIME Mis12 UPSTREAM CG10064
3L	10403795	3L_10403795_DEL [dm3] 3L_10410695_DEL [dm6]	CT	C	1.113e^-4	0.984	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
2L	18537048	2L_18537048_SNP [dm3] 2L_18537048_SNP [dm6]	T	G	1.116e^-4	0.984	INTRON Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7071763	X_7071763_SNP [dm3] X_7177730_SNP [dm6]	C	G	1.118e^-4	0.984	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13997694	3L_13997694_SNP [dm3] 3L_14004594_SNP [dm6]	T	C	1.134e^-4	0.984	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	2595104	2L_2595104_SNP [dm3] 2L_2595104_SNP [dm6]	C	A	1.139e^-4	0.984	INTERGENIC
X	16845336	X_16845336_SNP [dm3] X_16951303_SNP [dm6]	A	G	1.153e^-4	0.984	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16848260	X_16848260_SNP [dm3] X_16954227_SNP [dm6]	A	G	1.153e^-4	0.984	INTRON RhoGAP15B
X	16857414	X_16857414_SNP [dm3] X_16963381_SNP [dm6]	T	A	1.153e^-4	0.984	INTRON CG9086	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18068493	2R_18068493_SNP [dm3] 2R_22180988_SNP [dm6]	C	T	1.176e^-4	0.984	INTRON CG11170 & 1 other
3R	24520154	3R_24520154_SNP [dm3] 3R_28694432_SNP [dm6]	A	C	1.177e^-4	0.984	INTRON CG9990	TF binding site mE1_TFBS_cad
3R	24521867	3R_24521867_SNP [dm3] 3R_28696145_SNP [dm6]	C	T	1.177e^-4	0.984	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24521879	3R_24521879_SNP [dm3] 3R_28696157_SNP [dm6]	A	T	1.177e^-4	0.984	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19078414	2R_19078414_SNP [dm3] 2R_23190891_SNP [dm6]	C	G	1.190e^-4	0.984	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4570526	X_4570526_SNP [dm3] X_4676493_SNP [dm6]	T	A	1.192e^-4	0.984	UTR_5_PRIME rap
X	17908232	X_17908232_SNP [dm3] X_18014199_SNP [dm6]	G	A	1.198e^-4	0.984	INTRON Sh
3L	19014556	3L_19014556_SNP [dm3] 3L_19021456_SNP [dm6]	C	G	1.210e^-4	0.984	INTRON nkd
2L	6472292	2L_6472292_SNP [dm3] 2L_6472292_SNP [dm6]	C	T	1.210e^-4	0.984	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15265091	3L_15265091_SNP [dm3] 3L_15271991_SNP [dm6]	C	G	1.230e^-4	0.984	INTERGENIC
2R	13893647	2R_13893647_SNP [dm3] 2R_18006142_SNP [dm6]	T	A	1.256e^-4	0.984	DOWNSTREAM CR44419 INTRON dpr13
3R	26280684	3R_26280684_SNP [dm3] 3R_30454962_SNP [dm6]	C	A	1.264e^-4	0.984	INTRON aralar1
3L	10020533	3L_10020533_SNP [dm3] 3L_10027433_SNP [dm6]	T	C	1.298e^-4	0.984	INTRON dpr6
2R	18069647	2R_18069647_SNP [dm3] 2R_22182142_SNP [dm6]	G	T	1.304e^-4	0.984	NON_SYNONYMOUS_CODING CG11275 UPSTREAM MED16 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	13216695	3L_13216695_SNP [dm3] 3L_13223595_SNP [dm6]	A	G	1.306e^-4	0.984	INTERGENIC
3L	14005889	3L_14005889_SNP [dm3] 3L_14012789_SNP [dm6]	A	C	1.307e^-4	0.984	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14006113	3L_14006113_SNP [dm3] 3L_14013013_SNP [dm6]	G	A	1.307e^-4	0.984	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14006521	3L_14006521_SNP [dm3] 3L_14013421_SNP [dm6]	T	A	1.307e^-4	0.984	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14007243	3L_14007243_SNP [dm3] 3L_14014143_SNP [dm6]	C	G	1.307e^-4	0.984	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10519516	3L_10519516_SNP [dm3] 3L_10526416_SNP [dm6]	G	A	1.319e^-4	0.984	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8867369	X_8867369_SNP [dm3] X_8973336_SNP [dm6]	T	C	1.325e^-4	0.984	SYNONYMOUS_CODING CG10962 INTRON rdgA EXON CR43836
3L	16741655	3L_16741655_SNP [dm3] 3L_16748555_SNP [dm6]	T	A	1.350e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17053261	3L_17053261_SNP [dm3] 3L_17060161_SNP [dm6]	C	T	1.369e^-4	0.984	UTR_3_PRIME Rbp6
2R	18832627	2R_18832627_DEL [dm3] 2R_22945104_DEL [dm6]	GCGCGATAGTCAATAAATGT...	G	1.383e^-4	0.984	UTR_3_PRIME CG42694 DOWNSTREAM CG42694 INTRAGENIC CG42694 INTERGENIC	TF binding site mE1_TFBS_sens
2R	4146482	2R_4146482_SNP [dm3] 2R_8258977_SNP [dm6]	A	G	1.386e^-4	0.984	UPSTREAM CG30369 & 1 other INTERGENIC
3L	12875556	3L_12875556_INS [dm3] 3L_12882456_INS [dm6]	T	TT	1.387e^-4	0.984	INTERGENIC
3L	6960453	3L_6960453_SNP [dm3] 3L_6967353_SNP [dm6]	C	T	1.392e^-4	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14180608	3R_14180608_SNP [dm3] 3R_18354886_SNP [dm6]	T	C	1.405e^-4	0.984	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11945526	3L_11945526_SNP [dm3] 3L_11952426_SNP [dm6]	C	T	1.417e^-4	0.984	SYNONYMOUS_CODING obst-G DOWNSTREAM CG17826
X	14059630	X_14059630_SNP [dm3] X_14165597_SNP [dm6]	A	T	1.431e^-4	0.984	INTERGENIC
X	14059650	X_14059650_INS [dm3] X_14165617_INS [dm6]	G	GC	1.431e^-4	0.984	INTERGENIC
2L	5961031	2L_5961031_SNP [dm3] 2L_5961031_SNP [dm6]	A	C	1.438e^-4	0.984	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13738800	2R_13738800_SNP [dm3] 2R_17851295_SNP [dm6]	A	G	1.441e^-4	0.984	SYNONYMOUS_CODING olf186-F UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24522280	3R_24522280_SNP [dm3] 3R_28696558_SNP [dm6]	G	T	1.451e^-4	0.984	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26280695	3R_26280695_SNP [dm3] 3R_30454973_SNP [dm6]	C	T	1.457e^-4	0.984	INTRON aralar1
3R	24529699	3R_24529699_SNP [dm3] 3R_28703977_SNP [dm6]	A	C	1.483e^-4	0.984	INTRON htt
2R	13106278	2R_13106278_SNP [dm3] 2R_17218773_SNP [dm6]	C	T	1.485e^-4	0.984	INTRON mbl
3R	23117670	3R_23117670_SNP [dm3] 3R_27291948_SNP [dm6]	G	A	1.531e^-4	0.984	SYNONYMOUS_CODING CG3348 DOWNSTREAM Hmu
X	13322042	X_13322042_INS [dm3] X_13428009_INS [dm6]	T	TCTTCTCGGCAAT...	1.533e^-4	0.984	INTERGENIC
2R	13121762	2R_13121762_SNP [dm3] 2R_17234257_SNP [dm6]	T	G	1.535e^-4	0.984	INTRON mbl
3L	15265420	3L_15265420_SNP [dm3] 3L_15272320_SNP [dm6]	A	G	1.542e^-4	0.984	INTERGENIC
2L	9833362	2L_9833362_SNP [dm3] 2L_9833362_SNP [dm6]	T	A	1.546e^-4	0.984	INTRON nAChRalpha6
3R	15246590	3R_15246590_SNP [dm3] 3R_19420868_SNP [dm6]	C	T	1.550e^-4	0.984	INTRON CG31221
2R	19472356	2R_19472356_SNP [dm3] 2R_23584833_SNP [dm6]	T	C	1.552e^-4	0.984	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17713458	2R_17713458_SNP [dm3] 2R_21825953_SNP [dm6]	G	C	1.553e^-4	0.984	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16920439	X_16920439_SNP [dm3] X_17026406_SNP [dm6]	A	G	1.578e^-4	0.984	INTRON CG45002
3L	5260522	3L_5260522_SNP [dm3] 3L_5267422_SNP [dm6]	G	A	1.585e^-4	0.984	INTRON shep
2R	16699797	2R_16699797_SNP [dm3] 2R_20812292_SNP [dm6]	C	T	1.588e^-4	0.984	INTERGENIC
2L	11557870	2L_11557870_SNP [dm3] 2L_11557870_SNP [dm6]	T	A	1.608e^-4	0.984	INTERGENIC
3L	2995994	3L_2995994_SNP [dm3] 3L_2995994_SNP [dm6]	T	C	1.608e^-4	0.984	UTR_3_PRIME CG2113
3R	16443893	3R_16443893_SNP [dm3] 3R_20618171_SNP [dm6]	T	A	1.613e^-4	0.984	INTRON CG5466	TF binding site mE1_TFBS_chinmo
3L	5423530	3L_5423530_SNP [dm3] 3L_5430430_SNP [dm6]	A	G	1.619e^-4	0.984	INTRON CG34391
2R	17104990	2R_17104990_SNP [dm3] 2R_21217485_SNP [dm6]	C	G	1.631e^-4	0.984	DOWNSTREAM ASPP INTRON CG15661
3R	26280666	3R_26280666_SNP [dm3] 3R_30454944_SNP [dm6]	G	A	1.649e^-4	0.984	INTRON aralar1
3R	26280683	3R_26280683_SNP [dm3] 3R_30454961_SNP [dm6]	C	G	1.649e^-4	0.984	INTRON aralar1
3R	11739979	3R_11739979_SNP [dm3] 3R_15914257_SNP [dm6]	T	A	1.675e^-4	0.984	INTRON CG45105	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	24529698	3R_24529698_SNP [dm3] 3R_28703976_SNP [dm6]	A	G	1.681e^-4	0.984	INTRON htt
3R	24529707	3R_24529707_SNP [dm3] 3R_28703985_SNP [dm6]	A	G	1.681e^-4	0.984	INTRON htt
3R	24529708	3R_24529708_SNP [dm3] 3R_28703986_SNP [dm6]	C	G	1.681e^-4	0.984	INTRON htt
3R	24529712	3R_24529712_SNP [dm3] 3R_28703990_SNP [dm6]	C	T	1.681e^-4	0.984	INTRON htt
3R	24529759	3R_24529759_SNP [dm3] 3R_28704037_SNP [dm6]	T	A	1.681e^-4	0.984	INTRON htt
X	17315456	X_17315456_SNP [dm3] X_17421423_SNP [dm6]	G	A	1.682e^-4	0.984	SYNONYMOUS_CODING CG8611 DOWNSTREAM CG12994	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1321853	2L_1321853_INS [dm3] 2L_1321853_INS [dm6]	T	TA	1.718e^-4	0.984	INTERGENIC
2R	13747688	2R_13747688_SNP [dm3] 2R_17860183_SNP [dm6]	A	G	1.718e^-4	0.984	UTR_3_PRIME olf186-F UPSTREAM CG14490
3L	8689079	3L_8689079_DEL [dm3] 3L_8695979_DEL [dm6]	TT	T	1.726e^-4	0.984	INTERGENIC
3R	18637276	3R_18637276_SNP [dm3] 3R_22811554_SNP [dm6]	C	G	1.726e^-4	0.984	INTERGENIC
X	5327610	X_5327610_SNP [dm3] X_5433577_SNP [dm6]	C	A	1.726e^-4	0.984	EXON CR44471	TF binding site mE1_TFBS_Trl
3R	24976253	3R_24976253_SNP [dm3] 3R_29150531_SNP [dm6]	C	A	1.735e^-4	0.984	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	3992914	3R_3992914_SNP [dm3] 3R_8167192_SNP [dm6]	C	G	1.736e^-4	0.984	SYNONYMOUS_CODING grn INTRON grn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26280028	3R_26280028_SNP [dm3] 3R_30454306_SNP [dm6]	C	A	1.768e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3L	11120786	3L_11120786_SNP [dm3] 3L_11127686_SNP [dm6]	T	C	1.770e^-4	0.984	INTRON CG42575
3L	11120788	3L_11120788_SNP [dm3] 3L_11127688_SNP [dm6]	G	C	1.770e^-4	0.984	INTRON CG42575
3L	8919505	3L_8919505_SNP [dm3] 3L_8926405_SNP [dm6]	T	C	1.773e^-4	0.984	INTRON Tsp66E
2L	15547125	2L_15547125_SNP [dm3] 2L_15547125_SNP [dm6]	T	C	1.774e^-4	0.984	UPSTREAM Skadu INTERGENIC
3L	18034982	3L_18034982_SNP [dm3] 3L_18041882_SNP [dm6]	A	C	1.779e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3L	18034985	3L_18034985_SNP [dm3] 3L_18041885_SNP [dm6]	G	C	1.779e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
2R	18422041	2R_18422041_SNP [dm3] 2R_22534536_SNP [dm6]	G	A	1.781e^-4	0.984	INTRON px
X	16859710	X_16859710_SNP [dm3] X_16965677_SNP [dm6]	T	C	1.785e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3R	25337035	3R_25337035_SNP [dm3] 3R_29511313_SNP [dm6]	T	A	1.792e^-4	0.984	INTERGENIC
3R	20877075	3R_20877075_SNP [dm3] 3R_25051353_SNP [dm6]	C	T	1.796e^-4	0.984	NON_SYNONYMOUS_CODING CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9041544	2L_9041544_SNP [dm3] 2L_9041544_SNP [dm6]	C	T	1.800e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16376449	2R_16376449_SNP [dm3] 2R_20488944_SNP [dm6]	C	T	1.814e^-4	0.984	INTERGENIC
2L	2204611	2L_2204611_SNP [dm3] 2L_2204611_SNP [dm6]	C	T	1.882e^-4	0.984	INTRON CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2893813	3L_2893813_SNP [dm3] 3L_2893813_SNP [dm6]	T	C	1.886e^-4	0.984	INTERGENIC
2L	18901998	2L_18901998_SNP [dm3] 2L_18901998_SNP [dm6]	C	G	1.893e^-4	0.984	INTERGENIC
2L	10479871	2L_10479871_SNP [dm3] 2L_10479871_SNP [dm6]	A	T	1.893e^-4	0.984	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2L	10479882	2L_10479882_SNP [dm3] 2L_10479882_SNP [dm6]	T	A	1.893e^-4	0.984	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3R	10883818	3R_10883818_SNP [dm3] 3R_15058096_SNP [dm6]	G	A	1.899e^-4	0.984	INTRON dpr9
3R	15333839	3R_15333839_SNP [dm3] 3R_19508117_SNP [dm6]	T	C	1.899e^-4	0.984	INTRON Dys
3R	22071544	3R_22071544_SNP [dm3] 3R_26245822_SNP [dm6]	C	T	1.909e^-4	0.984	INTRON CR42745
3R	24976270	3R_24976270_SNP [dm3] 3R_29150548_SNP [dm6]	C	A	1.914e^-4	0.984	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13651030	3R_13651030_SNP [dm3] 3R_17825308_SNP [dm6]	G	C	1.919e^-4	0.984	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	10977736	X_10977736_SNP [dm3] X_11083703_SNP [dm6]	T	C	1.924e^-4	0.984	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	10829588	3L_10829588_SNP [dm3] 3L_10836488_SNP [dm6]	G	A	1.932e^-4	0.984	INTERGENIC
2L	1964289	2L_1964289_SNP [dm3] 2L_1964289_SNP [dm6]	C	A	1.933e^-4	0.984	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8919554	3L_8919554_SNP [dm3] 3L_8926454_SNP [dm6]	C	T	1.944e^-4	0.984	INTRON Tsp66E
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	1.944e^-4	0.984	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16699607	2R_16699607_SNP [dm3] 2R_20812102_SNP [dm6]	C	A	1.948e^-4	0.984	INTERGENIC
2L	21862129	2L_21862129_SNP [dm3] 2L_21862129_SNP [dm6]	C	T	1.951e^-4	0.984	INTRON CR44917
3R	18337023	3R_18337023_DEL [dm3] 3R_22511301_DEL [dm6]	TACT	T	1.957e^-4	0.984	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	13209399	3R_13209399_SNP [dm3] 3R_17383677_SNP [dm6]	G	A	1.970e^-4	0.984	UPSTREAM CR43196 INTRON Brf & 1 other
3L	5892956	3L_5892956_SNP [dm3] 3L_5899856_SNP [dm6]	T	A	1.974e^-4	0.984	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4405552	X_4405552_SNP [dm3] X_4511519_SNP [dm6]	G	A	1.976e^-4	0.984	INTRON CR32773	silencer mE1_HDAC_PRE
X	4405569	X_4405569_SNP [dm3] X_4511536_SNP [dm6]	G	A	1.976e^-4	0.984	INTRON CR32773	silencer mE1_HDAC_PRE
X	20741695	X_20741695_SNP [dm3] X_20870668_SNP [dm6]	C	A	1.979e^-4	0.984	INTRON shakB
X	20741783	X_20741783_SNP [dm3] X_20870756_SNP [dm6]	T	G	1.979e^-4	0.984	INTRON shakB
2L	19365252	2L_19365252_SNP [dm3] 2L_19365252_SNP [dm6]	A	T	1.980e^-4	0.984	SYNONYMOUS_CODING CG13086
3R	14877560	3R_14877560_SNP [dm3] 3R_19051838_SNP [dm6]	G	C	2.000e^-4	0.984	INTRON cdi
2R	9234290	2R_9234290_SNP [dm3] 2R_13346785_SNP [dm6]	C	T	2.001e^-4	0.984	INTRON CR44206
2R	9234311	2R_9234311_SNP [dm3] 2R_13346806_SNP [dm6]	G	A	2.001e^-4	0.984	INTRON CR44206
2L	21861774	2L_21861774_SNP [dm3] 2L_21861774_SNP [dm6]	A	T	2.026e^-4	0.984	INTRON CR44917	TF binding site mE1_TFBS_HSA
3L	18034990	3L_18034990_DEL [dm3] 3L_18041890_DEL [dm6]	CT	C	2.026e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3L	20196503	3L_20196503_SNP [dm3] 3L_20203403_SNP [dm6]	C	A	2.037e^-4	0.984	SYNONYMOUS_CODING CG7298 DOWNSTREAM CG7290	TF binding site mE1_TFBS_cad
X	2448777	X_2448777_SNP [dm3] X_2554744_SNP [dm6]	G	A	2.041e^-4	0.984	INTRON Pdfr
2L	9679134	2L_9679134_SNP [dm3] 2L_9679134_SNP [dm6]	G	T	2.045e^-4	0.984	INTERGENIC
2L	1664495	2L_1664495_SNP [dm3] 2L_1664495_SNP [dm6]	G	C	2.047e^-4	0.984	INTRON chinmo
3L	10823228	3L_10823228_SNP [dm3] 3L_10830128_SNP [dm6]	T	A	2.049e^-4	0.984	INTERGENIC
3L	10823244	3L_10823244_SNP [dm3] 3L_10830144_SNP [dm6]	T	C	2.049e^-4	0.984	INTERGENIC
3L	10823246	3L_10823246_SNP [dm3] 3L_10830146_SNP [dm6]	A	T	2.049e^-4	0.984	INTERGENIC
3L	10823260	3L_10823260_SNP [dm3] 3L_10830160_SNP [dm6]	G	T	2.049e^-4	0.984	INTERGENIC
3R	15551267	3R_15551267_SNP [dm3] 3R_19725545_SNP [dm6]	C	T	2.055e^-4	0.984	INTERGENIC
2R	12504385	2R_12504385_SNP [dm3] 2R_16616880_SNP [dm6]	G	C	2.059e^-4	0.984	INTRON CG5065
3L	18301026	3L_18301026_SNP [dm3] 3L_18307926_SNP [dm6]	C	T	2.060e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9110905	2R_9110905_SNP [dm3] 2R_13223400_SNP [dm6]	A	T	2.065e^-4	0.984	UPSTREAM Fsn & 1 other DOWNSTREAM CR43918 INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
X	7067427	X_7067427_SNP [dm3] X_7173394_SNP [dm6]	T	C	2.067e^-4	0.984	INTRON CG9650 & 1 other
X	7067433	X_7067433_SNP [dm3] X_7173400_SNP [dm6]	A	C	2.067e^-4	0.984	INTRON CG9650 & 1 other
2L	10479873	2L_10479873_SNP [dm3] 2L_10479873_SNP [dm6]	C	A	2.093e^-4	0.984	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3L	11459284	3L_11459284_SNP [dm3] 3L_11466184_SNP [dm6]	G	T	2.103e^-4	0.984	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24976325	3R_24976325_SNP [dm3] 3R_29150603_SNP [dm6]	G	A	2.121e^-4	0.984	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24976600	3R_24976600_SNP [dm3] 3R_29150878_SNP [dm6]	C	T	2.121e^-4	0.984	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24521841	3R_24521841_SNP [dm3] 3R_28696119_SNP [dm6]	T	A	2.125e^-4	0.984	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23062431	3R_23062431_SNP [dm3] 3R_27236709_SNP [dm6]	C	G	2.125e^-4	0.984	DOWNSTREAM CG31068 INTRON CG31064
2R	9233125	2R_9233125_SNP [dm3] 2R_13345620_SNP [dm6]	T	G	2.128e^-4	0.984	INTRON CR44206
X	17908477	X_17908477_INS [dm3] X_18014444_INS [dm6]	T	TT	2.129e^-4	0.984	UTR_5_PRIME Sh INTRON Sh
2R	576427	2R_576427_SNP [dm3] 2R_4688922_SNP [dm6]	G	C	2.132e^-4	0.984	INTERGENIC	transposable element FlyBase
3L	10825159	3L_10825159_SNP [dm3] 3L_10832059_SNP [dm6]	G	A	2.135e^-4	0.984	INTERGENIC
3R	9004210	3R_9004210_SNP [dm3] 3R_13178488_SNP [dm6]	T	C	2.135e^-4	0.984	INTERGENIC
3R	23228388	3R_23228388_SNP [dm3] 3R_27402666_SNP [dm6]	C	T	2.143e^-4	0.984	INTRON side
2L	7972964	2L_7972964_SNP [dm3] 2L_7972964_SNP [dm6]	T	C	2.147e^-4	0.984	INTRON Snoo
2L	7972966	2L_7972966_SNP [dm3] 2L_7972966_SNP [dm6]	C	T	2.147e^-4	0.984	INTRON Snoo
X	3872249	X_3872249_SNP [dm3] X_3978216_SNP [dm6]	T	A	2.175e^-4	0.984	INTERGENIC
3L	18034962	3L_18034962_SNP [dm3] 3L_18041862_SNP [dm6]	T	A	2.182e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
X	12349090	X_12349090_SNP [dm3] X_12455057_SNP [dm6]	T	C	2.190e^-4	0.984	SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
3R	16711344	3R_16711344_SNP [dm3] 3R_20885622_SNP [dm6]	C	T	2.190e^-4	0.984	INTERGENIC
3L	22066689	3L_22066689_SNP [dm3] 3L_22073589_SNP [dm6]	G	A	2.192e^-4	0.984	NON_SYNONYMOUS_CODING CG7133 DOWNSTREAM CR43995	TF binding site mE1_TFBS_sens
2L	7755355	2L_7755355_SNP [dm3] 2L_7755355_SNP [dm6]	C	T	2.196e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
2L	7755393	2L_7755393_SNP [dm3] 2L_7755393_SNP [dm6]	T	G	2.196e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
2L	7755394	2L_7755394_SNP [dm3] 2L_7755394_SNP [dm6]	A	G	2.196e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
2L	7755434	2L_7755434_SNP [dm3] 2L_7755434_SNP [dm6]	T	C	2.196e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
3L	14895936	3L_14895936_SNP [dm3] 3L_14902836_SNP [dm6]	T	A	2.204e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
3L	14896104	3L_14896104_INS [dm3] 3L_14903004_INS [dm6]	A	ATA	2.204e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
2L	14433551	2L_14433551_SNP [dm3] 2L_14433551_SNP [dm6]	C	T	2.205e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10827496	3L_10827496_SNP [dm3] 3L_10834396_SNP [dm6]	C	T	2.213e^-4	0.984	INTERGENIC
2R	2912365	2R_2912365_SNP [dm3] 2R_7024860_SNP [dm6]	A	G	2.222e^-4	0.984	UPSTREAM Tsp42Ef & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11459323	3L_11459323_SNP [dm3] 3L_11466223_SNP [dm6]	C	T	2.224e^-4	0.984	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	2.230e^-4	0.984	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9689963	2R_9689963_SNP [dm3] 2R_13802458_SNP [dm6]	C	T	2.255e^-4	0.984	INTRON Cpr50Cb
2R	8924112	2R_8924112_SNP [dm3] 2R_13036607_SNP [dm6]	C	T	2.264e^-4	0.984	INTERGENIC
3R	14556826	3R_14556826_SNP [dm3] 3R_18731104_SNP [dm6]	C	G	2.273e^-4	0.984	UTR_3_PRIME Cha
3L	9357601	3L_9357601_SNP [dm3] 3L_9364501_SNP [dm6]	C	T	2.275e^-4	0.984	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad
3L	9357606	3L_9357606_SNP [dm3] 3L_9364506_SNP [dm6]	A	G	2.275e^-4	0.984	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17327591	X_17327591_SNP [dm3] X_17433558_SNP [dm6]	T	C	2.279e^-4	0.984	INTRON CG12994
2R	18421933	2R_18421933_SNP [dm3] 2R_22534428_SNP [dm6]	A	G	2.295e^-4	0.984	INTRON px
3R	26279972	3R_26279972_SNP [dm3] 3R_30454250_SNP [dm6]	G	A	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	26280009	3R_26280009_DEL [dm3] 3R_30454287_DEL [dm6]	CTCCA	T	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	26280018	3R_26280018_MNP [dm3] 3R_30454296_MNP [dm6]	ATCGA	TATAG	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	26280029	3R_26280029_DEL [dm3] 3R_30454307_DEL [dm6]	TGTA	T	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	26280035	3R_26280035_DEL [dm3] 3R_30454313_DEL [dm6]	TCATAC	T	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	26280048	3R_26280048_SNP [dm3] 3R_30454326_SNP [dm6]	T	G	2.304e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3R	14112222	3R_14112222_SNP [dm3] 3R_18286500_SNP [dm6]	C	G	2.328e^-4	0.984	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
3R	14112240	3R_14112240_SNP [dm3] 3R_18286518_SNP [dm6]	G	A	2.328e^-4	0.984	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
3L	1526037	3L_1526037_SNP [dm3] 3L_1526037_SNP [dm6]	C	A	2.328e^-4	0.984	INTRON CG12090
2R	9232547	2R_9232547_SNP [dm3] 2R_13345042_SNP [dm6]	G	A	2.338e^-4	0.984	INTRON CR44206
3L	20175045	3L_20175045_SNP [dm3] 3L_20181945_SNP [dm6]	G	T	2.383e^-4	0.984	INTRON CG42674
3L	9818012	3L_9818012_SNP [dm3] 3L_9824912_SNP [dm6]	G	A	2.413e^-4	0.984	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
2L	12158262	2L_12158262_SNP [dm3] 2L_12158262_SNP [dm6]	C	G	2.427e^-4	0.984	INTRON CG31760
3L	14896299	3L_14896299_SNP [dm3] 3L_14903199_SNP [dm6]	A	G	2.431e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
2R	15863712	2R_15863712_SNP [dm3] 2R_19976207_SNP [dm6]	T	A	2.432e^-4	0.984	INTERGENIC
2L	5983993	2L_5983993_SNP [dm3] 2L_5983993_SNP [dm6]	C	A	2.437e^-4	0.984	INTRON eIF-4a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9052652	2R_9052652_SNP [dm3] 2R_13165147_SNP [dm6]	T	C	2.437e^-4	0.984	INTRON GLaz
3L	15763629	3L_15763629_SNP [dm3] 3L_15770529_SNP [dm6]	G	A	2.441e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18506132	3R_18506132_SNP [dm3] 3R_22680410_SNP [dm6]	G	T	2.444e^-4	0.984	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4700327	3L_4700327_SNP [dm3] 3L_4700327_SNP [dm6]	C	T	2.447e^-4	0.984	INTRON RhoGEF64C
2L	6335891	2L_6335891_SNP [dm3] 2L_6335891_SNP [dm6]	T	C	2.494e^-4	0.984	NON_SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11550800	3L_11550800_SNP [dm3] 3L_11557700_SNP [dm6]	T	C	2.498e^-4	0.984	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16922833	X_16922833_SNP [dm3] X_17028800_SNP [dm6]	A	G	2.509e^-4	0.984	INTRON CG45002
2R	9234826	2R_9234826_SNP [dm3] 2R_13347321_SNP [dm6]	T	A	2.511e^-4	0.984	INTRON CR44206
3R	19675395	3R_19675395_SNP [dm3] 3R_23849673_SNP [dm6]	G	A	2.514e^-4	0.984	UTR_3_PRIME CG34355
3L	13057760	3L_13057760_SNP [dm3] 3L_13064660_SNP [dm6]	C	G	2.529e^-4	0.984	DOWNSTREAM CG34429 INTERGENIC
3L	18167084	3L_18167084_SNP [dm3] 3L_18173984_SNP [dm6]	G	C	2.529e^-4	0.984	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2448650	X_2448650_SNP [dm3] X_2554617_SNP [dm6]	T	A	2.529e^-4	0.984	INTRON Pdfr
X	3869134	X_3869134_SNP [dm3] X_3975101_SNP [dm6]	T	C	2.543e^-4	0.984	INTERGENIC
2R	9236177	2R_9236177_SNP [dm3] 2R_13348672_SNP [dm6]	A	T	2.547e^-4	0.984	INTRON CR44206
3L	14009103	3L_14009103_SNP [dm3] 3L_14016003_SNP [dm6]	T	C	2.566e^-4	0.984	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9680308	2L_9680308_SNP [dm3] 2L_9680308_SNP [dm6]	T	A	2.570e^-4	0.984	INTERGENIC
2L	2612183	2L_2612183_SNP [dm3] 2L_2612183_SNP [dm6]	T	A	2.590e^-4	0.984	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14760276	X_14760276_INS [dm3] X_14866243_INS [dm6]	T	TT	2.599e^-4	0.984	UTR_5_PRIME CG9518 INTRON Flo2
3R	10680218	3R_10680218_SNP [dm3] 3R_14854496_SNP [dm6]	G	A	2.599e^-4	0.984	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	8708644	3R_8708644_INS [dm3] 3R_12882922_INS [dm6]	C	CA	2.608e^-4	0.984	INTERGENIC
3R	8708648	3R_8708648_DEL [dm3] 3R_12882926_DEL [dm6]	AT	A	2.608e^-4	0.984	INTERGENIC
2R	19117765	2R_19117765_SNP [dm3] 2R_23230242_SNP [dm6]	T	C	2.608e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10456181	3L_10456181_SNP [dm3] 3L_10463081_SNP [dm6]	C	T	2.619e^-4	0.984	UTR_5_PRIME Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16864516	2R_16864516_SNP [dm3] 2R_20977011_SNP [dm6]	A	C	2.625e^-4	0.984	UPSTREAM CG9344 DOWNSTREAM CG15650 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	13216700	3L_13216700_SNP [dm3] 3L_13223600_SNP [dm6]	T	G	2.626e^-4	0.984	INTERGENIC
3R	18506126	3R_18506126_SNP [dm3] 3R_22680404_SNP [dm6]	G	A	2.632e^-4	0.984	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20946707	3L_20946707_DEL [dm3] 3L_20953607_DEL [dm6]	TGG	T	2.652e^-4	0.984	INTERGENIC
3L	14245090	3L_14245090_SNP [dm3] 3L_14251990_SNP [dm6]	T	C	2.662e^-4	0.984	INTERGENIC
3L	18034997	3L_18034997_SNP [dm3] 3L_18041897_SNP [dm6]	C	A	2.671e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3L	4700115	3L_4700115_SNP [dm3] 3L_4700115_SNP [dm6]	A	G	2.678e^-4	0.984	INTRON RhoGEF64C
2R	9236166	2R_9236166_SNP [dm3] 2R_13348661_SNP [dm6]	G	C	2.678e^-4	0.984	INTRON CR44206
2R	9236167	2R_9236167_SNP [dm3] 2R_13348662_SNP [dm6]	C	G	2.678e^-4	0.984	INTRON CR44206
3R	7313945	3R_7313945_SNP [dm3] 3R_11488223_SNP [dm6]	C	A	2.697e^-4	0.984	DOWNSTREAM CR45581 INTERGENIC
X	16047912	X_16047912_SNP [dm3] X_16153879_SNP [dm6]	G	C	2.702e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9461544	3L_9461544_SNP [dm3] 3L_9468444_SNP [dm6]	A	G	2.707e^-4	0.984	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20374606	2L_20374606_SNP [dm3] 2L_20374606_SNP [dm6]	G	A	2.711e^-4	0.984	UPSTREAM Ugt37a1 INTERGENIC
3R	20182790	3R_20182790_SNP [dm3] 3R_24357068_SNP [dm6]	T	C	2.726e^-4	0.984	NON_SYNONYMOUS_CODING Golgin84 DOWNSTREAM CG6454	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14896056	3L_14896056_DEL [dm3] 3L_14902956_DEL [dm6]	ATA	A	2.732e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
2L	12612983	2L_12612983_SNP [dm3] 2L_12612983_SNP [dm6]	T	C	2.737e^-4	0.984	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12612988	2L_12612988_SNP [dm3] 2L_12612988_SNP [dm6]	C	T	2.737e^-4	0.984	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	9440661	3L_9440661_SNP [dm3] 3L_9447561_SNP [dm6]	C	A	2.747e^-4	0.984	INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	1254818	2L_1254818_SNP [dm3] 2L_1254818_SNP [dm6]	T	A	2.758e^-4	0.984	INTERGENIC
3L	12598032	3L_12598032_SNP [dm3] 3L_12604932_SNP [dm6]	G	A	2.760e^-4	0.984	INTERGENIC
2R	16427525	2R_16427525_SNP [dm3] 2R_20540020_SNP [dm6]	G	A	2.793e^-4	0.984	NON_SYNONYMOUS_CODING CG13428 UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9448502	3L_9448502_SNP [dm3] 3L_9455402_SNP [dm6]	C	G	2.805e^-4	0.984	SYNONYMOUS_CODING phol UPSTREAM CG3552 DOWNSTREAM CG3437	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9449498	3L_9449498_SNP [dm3] 3L_9456398_SNP [dm6]	C	T	2.805e^-4	0.984	SYNONYMOUS_STOP CG3437 UTR_5_PRIME CG3552 UPSTREAM phol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	16844807	X_16844807_SNP [dm3] X_16950774_SNP [dm6]	T	G	2.807e^-4	0.984	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	1303863	2L_1303863_DEL [dm3] 2L_1303863_DEL [dm6]	TTCGAACT	T	2.812e^-4	0.984	INTERGENIC
3R	10899745	3R_10899745_SNP [dm3] 3R_15074023_SNP [dm6]	A	C	2.826e^-4	0.984	INTRON dpr9
2L	2597645	2L_2597645_SNP [dm3] 2L_2597645_SNP [dm6]	T	A	2.832e^-4	0.984	DOWNSTREAM CR44790 INTERGENIC
3R	19570725	3R_19570725_SNP [dm3] 3R_23745003_SNP [dm6]	C	T	2.837e^-4	0.984	INTRON Hmgcr
2L	9103289	2L_9103289_SNP [dm3] 2L_9103289_SNP [dm6]	G	A	2.855e^-4	0.984	INTERGENIC
2R	15587187	2R_15587187_SNP [dm3] 2R_19699682_SNP [dm6]	T	G	2.860e^-4	0.984	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3L	5013194	3L_5013194_SNP [dm3] 3L_5013194_SNP [dm6]	T	A	2.894e^-4	0.984	INTRON Con
2R	9012047	2R_9012047_SNP [dm3] 2R_13124542_SNP [dm6]	G	T	2.895e^-4	0.984	NON_SYNONYMOUS_CODING CG13325
2R	10208973	2R_10208973_SNP [dm3] 2R_14321468_SNP [dm6]	A	T	2.901e^-4	0.984	INTRON Shroom	TF binding site mE1_TFBS_cad
3R	20113849	3R_20113849_SNP [dm3] 3R_24288127_SNP [dm6]	C	T	2.917e^-4	0.984	SYNONYMOUS_CODING CG6356 DOWNSTREAM CG34290
3R	22491152	3R_22491152_DEL [dm3] 3R_26665430_DEL [dm6]	CAAC	C	2.928e^-4	0.984	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2R	9894307	2R_9894307_SNP [dm3] 2R_14006802_SNP [dm6]	C	T	2.933e^-4	0.984	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2912393	3L_2912393_SNP [dm3] 3L_2912393_SNP [dm6]	G	T	2.948e^-4	0.984	INTRON Shab
3R	5696879	3R_5696879_SNP [dm3] 3R_9871157_SNP [dm6]	C	G	2.958e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_sens
2R	17104840	2R_17104840_SNP [dm3] 2R_21217335_SNP [dm6]	T	A	2.967e^-4	0.984	NON_SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP
3L	14009094	3L_14009094_SNP [dm3] 3L_14015994_SNP [dm6]	C	A	2.977e^-4	0.984	NON_SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12835970	3L_12835970_INS [dm3] 3L_12842870_INS [dm6]	A	AGA	2.977e^-4	0.984	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	6297643	X_6297643_SNP [dm3] X_6403610_SNP [dm6]	C	T	2.985e^-4	0.984	INTERGENIC
X	2446946	X_2446946_SNP [dm3] X_2552913_SNP [dm6]	C	T	2.991e^-4	0.984	INTRON Pdfr	TF binding site mE1_TFBS_chinmo
X	10977814	X_10977814_SNP [dm3] X_11083781_SNP [dm6]	G	A	2.997e^-4	0.984	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6965378	3L_6965378_INS [dm3] 3L_6972278_INS [dm6]	C	CGC	3.019e^-4	0.984	DOWNSTREAM CG9953 & 1 other INTRON CG10063
3R	537694	3R_537694_SNP [dm3] 3R_4711972_SNP [dm6]	A	G	3.020e^-4	0.984	UTR_3_PRIME CG43427 DOWNSTREAM CG9769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22980139	3R_22980139_SNP [dm3] 3R_27154417_SNP [dm6]	A	G	3.027e^-4	0.984	INTRON Men-b
3R	22980141	3R_22980141_SNP [dm3] 3R_27154419_SNP [dm6]	A	G	3.027e^-4	0.984	INTRON Men-b
3R	22980143	3R_22980143_SNP [dm3] 3R_27154421_SNP [dm6]	T	A	3.027e^-4	0.984	INTRON Men-b
3R	22761386	3R_22761386_SNP [dm3] 3R_26935664_SNP [dm6]	G	T	3.038e^-4	0.984	INTRON sda
3L	15263986	3L_15263986_SNP [dm3] 3L_15270886_SNP [dm6]	C	T	3.050e^-4	0.984	INTERGENIC
3L	7996490	3L_7996490_SNP [dm3] 3L_8003390_SNP [dm6]	T	C	3.070e^-4	0.984	INTRON nmo
2L	17445866	2L_17445866_SNP [dm3] 2L_17445866_SNP [dm6]	A	G	3.072e^-4	0.984	UPSTREAM dl INTRON dl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18624259	2L_18624259_SNP [dm3] 2L_18624259_SNP [dm6]	G	T	3.074e^-4	0.984	INTRON MESR3
3L	20198455	3L_20198455_SNP [dm3] 3L_20205355_SNP [dm6]	T	A	3.075e^-4	0.984	NON_SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11451413	3L_11451413_SNP [dm3] 3L_11458313_SNP [dm6]	C	T	3.093e^-4	0.984	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	3.094e^-4	0.984	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11255649	3L_11255649_SNP [dm3] 3L_11262549_SNP [dm6]	G	T	3.095e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24505182	3R_24505182_SNP [dm3] 3R_28679460_SNP [dm6]	A	G	3.107e^-4	0.984	INTRON CG9990
2L	5960929	2L_5960929_DEL [dm3] 2L_5960929_DEL [dm6]	ATA	A	3.113e^-4	0.984	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11472703	3R_11472703_SNP [dm3] 3R_15646981_SNP [dm6]	G	A	3.113e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	19560363	3R_19560363_SNP [dm3] 3R_23734641_SNP [dm6]	G	A	3.122e^-4	0.984	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4022830	2L_4022830_SNP [dm3] 2L_4022830_SNP [dm6]	C	T	3.127e^-4	0.984	INTERGENIC
3L	14894470	3L_14894470_SNP [dm3] 3L_14901370_SNP [dm6]	T	C	3.139e^-4	0.984	INTERGENIC
3L	14894502	3L_14894502_SNP [dm3] 3L_14901402_SNP [dm6]	C	A	3.139e^-4	0.984	INTERGENIC
3L	8921031	3L_8921031_SNP [dm3] 3L_8927931_SNP [dm6]	G	A	3.139e^-4	0.984	INTRON Tsp66E
2L	10525890	2L_10525890_SNP [dm3] 2L_10525890_SNP [dm6]	A	C	3.145e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10208955	2R_10208955_SNP [dm3] 2R_14321450_SNP [dm6]	C	A	3.148e^-4	0.984	INTRON Shroom	TF binding site mE1_TFBS_cad
X	20472316	X_20472316_SNP [dm3] X_20601289_SNP [dm6]	T	A	3.148e^-4	0.984	INTRON RunxA
2R	17105299	2R_17105299_SNP [dm3] 2R_21217794_SNP [dm6]	T	A	3.150e^-4	0.984	UPSTREAM CG15661 DOWNSTREAM ASPP INTERGENIC
X	21448530	X_21448530_SNP [dm3] X_21577503_SNP [dm6]	G	T	3.157e^-4	0.984	INTERGENIC
X	2760445	X_2760445_SNP [dm3] X_2866412_SNP [dm6]	T	G	3.161e^-4	0.984	INTRON kirre	TF binding site mE1_TFBS_inv
X	2760482	X_2760482_SNP [dm3] X_2866449_SNP [dm6]	A	T	3.161e^-4	0.984	INTRON kirre	TF binding site mE1_TFBS_inv
X	2760491	X_2760491_SNP [dm3] X_2866458_SNP [dm6]	T	C	3.161e^-4	0.984	INTRON kirre	TF binding site mE1_TFBS_inv
2R	6256362	2R_6256362_SNP [dm3] 2R_10368857_SNP [dm6]	C	T	3.175e^-4	0.984	INTRON CG42732
3R	26965242	3R_26965242_SNP [dm3] 3R_31139520_SNP [dm6]	G	T	3.181e^-4	0.984	INTRON Gycbeta100B
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	3.191e^-4	0.984	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
3R	25337030	3R_25337030_SNP [dm3] 3R_29511308_SNP [dm6]	T	G	3.200e^-4	0.984	INTERGENIC
3R	25337032	3R_25337032_SNP [dm3] 3R_29511310_SNP [dm6]	T	A	3.200e^-4	0.984	INTERGENIC
3R	25337034	3R_25337034_SNP [dm3] 3R_29511312_SNP [dm6]	C	G	3.200e^-4	0.984	INTERGENIC
3R	25337038	3R_25337038_DEL [dm3] 3R_29511316_DEL [dm6]	TGACATCAAAAGCTTACTTA...	T	3.200e^-4	0.984	INTERGENIC
3R	25337073	3R_25337073_SNP [dm3] 3R_29511351_SNP [dm6]	A	G	3.200e^-4	0.984	INTERGENIC
3R	25337080	3R_25337080_SNP [dm3] 3R_29511358_SNP [dm6]	A	G	3.200e^-4	0.984	INTERGENIC
3R	25337083	3R_25337083_SNP [dm3] 3R_29511361_SNP [dm6]	C	G	3.200e^-4	0.984	INTERGENIC
3R	25337086	3R_25337086_MNP [dm3] 3R_29511364_MNP [dm6]	GTG	CGT	3.200e^-4	0.984	INTERGENIC
3R	25337090	3R_25337090_DEL [dm3] 3R_29511368_DEL [dm6]	TCTA	G	3.200e^-4	0.984	INTERGENIC
X	16846704	X_16846704_SNP [dm3] X_16952671_SNP [dm6]	C	T	3.207e^-4	0.984	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16846860	X_16846860_SNP [dm3] X_16952827_SNP [dm6]	T	C	3.207e^-4	0.984	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16848349	X_16848349_INS [dm3] X_16954316_INS [dm6]	T	TT	3.207e^-4	0.984	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16854529	X_16854529_SNP [dm3] X_16960496_SNP [dm6]	A	T	3.207e^-4	0.984	INTRON CG9086	TF binding site mE1_TFBS_cad
X	16855069	X_16855069_SNP [dm3] X_16961036_SNP [dm6]	G	A	3.207e^-4	0.984	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16855153	X_16855153_SNP [dm3] X_16961120_SNP [dm6]	T	C	3.207e^-4	0.984	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16856948	X_16856948_SNP [dm3] X_16962915_SNP [dm6]	C	A	3.207e^-4	0.984	INTRON CG9086
X	16859829	X_16859829_SNP [dm3] X_16965796_SNP [dm6]	G	A	3.207e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
X	16860837	X_16860837_SNP [dm3] X_16966804_SNP [dm6]	A	G	3.207e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	16861279	X_16861279_SNP [dm3] X_16967246_SNP [dm6]	C	T	3.207e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	16861282	X_16861282_DEL [dm3] X_16967249_DEL [dm6]	GGAATTGAAAA...	TC	3.207e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	16861294	X_16861294_SNP [dm3] X_16967261_SNP [dm6]	A	G	3.207e^-4	0.984	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	10401896	3R_10401896_DEL [dm3] 3R_14576174_DEL [dm6]	TT	C	3.210e^-4	0.984	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2146598	2L_2146598_SNP [dm3] 2L_2146598_SNP [dm6]	G	T	3.216e^-4	0.984	NON_SYNONYMOUS_CODING CG11723 UPSTREAM CG7261	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
X	3926149	X_3926149_SNP [dm3] X_4032116_SNP [dm6]	G	A	3.218e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24776026	3R_24776026_DEL [dm3] 3R_28950304_DEL [dm6]	AGTATAAAGGTACTTTTTGT...	A	3.218e^-4	0.984	INTRON CG14521
3R	24776069	3R_24776069_SNP [dm3] 3R_28950347_SNP [dm6]	A	T	3.218e^-4	0.984	INTRON CG14521
3L	16428690	3L_16428690_INS [dm3] 3L_16435590_INS [dm6]	A	AA	3.233e^-4	0.984	INTRON CG33158 & 1 other
3R	10401901	3R_10401901_SNP [dm3] 3R_14576179_SNP [dm6]	A	C	3.233e^-4	0.984	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10187907	2L_10187907_SNP [dm3] 2L_10187907_SNP [dm6]	C	G	3.235e^-4	0.984	INTRON Sur
3R	20026593	3R_20026593_DEL [dm3] 3R_24200871_DEL [dm6]	CGCCACGGC	C	3.237e^-4	0.984	UTR_5_PRIME twin INTRON twin
3L	14896172	3L_14896172_DEL [dm3] 3L_14903072_DEL [dm6]	GTGTGAGGTAGCCAAATG...	G	3.240e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
3L	15226567	3L_15226567_SNP [dm3] 3L_15233467_SNP [dm6]	T	C	3.246e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3R	19010204	3R_19010204_SNP [dm3] 3R_23184482_SNP [dm6]	C	A	3.256e^-4	0.984	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5844816	2L_5844816_SNP [dm3] 2L_5844816_SNP [dm6]	A	T	3.265e^-4	0.984	INTRON TrissinR
3R	24522372	3R_24522372_SNP [dm3] 3R_28696650_SNP [dm6]	A	G	3.279e^-4	0.984	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24522572	3R_24522572_SNP [dm3] 3R_28696850_SNP [dm6]	C	T	3.279e^-4	0.984	SYNONYMOUS_CODING htt DOWNSTREAM CG9990	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24907018	3R_24907018_SNP [dm3] 3R_29081296_SNP [dm6]	T	C	3.289e^-4	0.984	INTRON CG11873
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	3.297e^-4	0.984	INTRON CG8910
2L	21862631	2L_21862631_DEL [dm3] 2L_21862631_DEL [dm6]	AG	A	3.298e^-4	0.984	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	21862634	2L_21862634_DEL [dm3] 2L_21862634_DEL [dm6]	CGATTCAGT	C	3.298e^-4	0.984	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	16424484	2R_16424484_SNP [dm3] 2R_20536979_SNP [dm6]	C	T	3.325e^-4	0.984	SYNONYMOUS_CODING CG13423
2R	16424596	2R_16424596_SNP [dm3] 2R_20537091_SNP [dm6]	T	C	3.325e^-4	0.984	SYNONYMOUS_CODING CG13423
X	10225726	X_10225726_SNP [dm3] X_10331693_SNP [dm6]	C	G	3.332e^-4	0.984	UTR_5_PRIME CG15306
3L	9439798	3L_9439798_SNP [dm3] 3L_9446698_SNP [dm6]	T	C	3.344e^-4	0.984	UPSTREAM CG3529 DOWNSTREAM CG33926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
X	12369163	X_12369163_SNP [dm3] X_12475130_SNP [dm6]	C	G	3.344e^-4	0.984	UPSTREAM CG42258 INTRON CG42258
X	16096816	X_16096816_SNP [dm3] X_16202783_SNP [dm6]	G	T	3.347e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16096826	X_16096826_SNP [dm3] X_16202793_SNP [dm6]	A	T	3.347e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7969775	2L_7969775_SNP [dm3] 2L_7969775_SNP [dm6]	T	C	3.355e^-4	0.984	INTRON Snoo
2L	18049802	2L_18049802_SNP [dm3] 2L_18049802_SNP [dm6]	T	A	3.356e^-4	0.984	INTRON rdo
2L	7755258	2L_7755258_SNP [dm3] 2L_7755258_SNP [dm6]	A	C	3.358e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
X	16096941	X_16096941_SNP [dm3] X_16202908_SNP [dm6]	C	T	3.375e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	7562759	2L_7562759_SNP [dm3] 2L_7562759_SNP [dm6]	A	G	3.380e^-4	0.984	INTRON RapGAP1
3R	18932639	3R_18932639_SNP [dm3] 3R_23106917_SNP [dm6]	T	C	3.385e^-4	0.984	INTRON CG13830
2R	17643715	2R_17643715_SNP [dm3] 2R_21756210_SNP [dm6]	T	C	3.390e^-4	0.984	INTERGENIC
2R	17643718	2R_17643718_SNP [dm3] 2R_21756213_SNP [dm6]	A	T	3.390e^-4	0.984	INTERGENIC
2R	12366397	2R_12366397_SNP [dm3] 2R_16478892_SNP [dm6]	C	T	3.393e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21443436	X_21443436_DEL [dm3] X_21572409_DEL [dm6]	TT	T	3.405e^-4	0.984	INTERGENIC
2L	11950766	2L_11950766_SNP [dm3] 2L_11950766_SNP [dm6]	C	G	3.418e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15896804	X_15896804_SNP [dm3] X_16002771_SNP [dm6]	A	G	3.422e^-4	0.984	INTRON vap
3L	18596134	3L_18596134_SNP [dm3] 3L_18603034_SNP [dm6]	C	T	3.422e^-4	0.984	UPSTREAM CG4174 & 1 other INTRON CG4174 & 1 other
3L	5241778	3L_5241778_SNP [dm3] 3L_5248678_SNP [dm6]	A	T	3.426e^-4	0.984	UPSTREAM shep INTRON shep
3R	26280024	3R_26280024_SNP [dm3] 3R_30454302_SNP [dm6]	C	A	3.426e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
2L	16299435	2L_16299435_SNP [dm3] 2L_16299435_SNP [dm6]	T	C	3.430e^-4	0.984	UTR_5_PRIME heix UPSTREAM CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	20401983	X_20401983_SNP [dm3] X_20530956_SNP [dm6]	A	G	3.446e^-4	0.984	INTERGENIC
2R	11970977	2R_11970977_SNP [dm3] 2R_16083472_SNP [dm6]	G	C	3.465e^-4	0.984	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
3L	11625248	3L_11625248_SNP [dm3] 3L_11632148_SNP [dm6]	A	C	3.466e^-4	0.984	DOWNSTREAM CR45158 INTRON CG32091
2R	12521016	2R_12521016_SNP [dm3] 2R_16633511_SNP [dm6]	T	G	3.469e^-4	0.984	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18074547	2R_18074547_SNP [dm3] 2R_22187042_SNP [dm6]	G	A	3.473e^-4	0.984	SYNONYMOUS_CODING Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13644850	3R_13644850_SNP [dm3] 3R_17819128_SNP [dm6]	T	C	3.474e^-4	0.984	INTRON tinc
3R	13644852	3R_13644852_SNP [dm3] 3R_17819130_SNP [dm6]	G	A	3.474e^-4	0.984	INTRON tinc
X	22272985	X_22272985_INS [dm3] X_22871149_INS [dm6]	G	GGG	3.496e^-4	0.984	INTRON CG42346 & 1 other
X	2760446	X_2760446_DEL [dm3] X_2866413_DEL [dm6]	TAAAA	T	3.509e^-4	0.984	INTRON kirre	TF binding site mE1_TFBS_inv
3L	7861489	3L_7861489_SNP [dm3] 3L_7868389_SNP [dm6]	C	G	3.517e^-4	0.984	UPSTREAM CG32365 INTERGENIC
3R	13886983	3R_13886983_SNP [dm3] 3R_18061261_SNP [dm6]	T	A	3.518e^-4	0.984	INTERGENIC
2R	3020244	2R_3020244_SNP [dm3] 2R_7132739_SNP [dm6]	T	C	3.523e^-4	0.984	UPSTREAM Cyp9b2 INTERGENIC
3R	10262525	3R_10262525_SNP [dm3] 3R_14436803_SNP [dm6]	G	A	3.536e^-4	0.984	INTRON cv-c
X	10977868	X_10977868_SNP [dm3] X_11083835_SNP [dm6]	G	A	3.540e^-4	0.984	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1526071	3L_1526071_SNP [dm3] 3L_1526071_SNP [dm6]	T	C	3.548e^-4	0.984	INTRON CG12090
3R	13790522	3R_13790522_SNP [dm3] 3R_17964800_SNP [dm6]	A	G	3.550e^-4	0.984	INTRON cpo
2L	10055059	2L_10055059_SNP [dm3] 2L_10055059_SNP [dm6]	T	G	3.555e^-4	0.984	SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11976857	2R_11976857_SNP [dm3] 2R_16089352_SNP [dm6]	T	G	3.575e^-4	0.984	INTRON Dg
3L	3541357	3L_3541357_SNP [dm3] 3L_3541357_SNP [dm6]	T	A	3.575e^-4	0.984	INTRON Eip63E
3R	13758247	3R_13758247_SNP [dm3] 3R_17932525_SNP [dm6]	G	A	3.578e^-4	0.984	INTRON cpo
X	16096849	X_16096849_DEL [dm3] X_16202816_DEL [dm6]	TT	C	3.590e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2150173	2L_2150173_SNP [dm3] 2L_2150173_SNP [dm6]	C	T	3.594e^-4	0.984	SYNONYMOUS_CODING CG7261
X	7658002	X_7658002_SNP [dm3] X_7763969_SNP [dm6]	T	C	3.598e^-4	0.984	INTERGENIC
3R	23063374	3R_23063374_SNP [dm3] 3R_27237652_SNP [dm6]	A	T	3.611e^-4	0.984	NON_SYNONYMOUS_CODING CG31064 INTRON CG31064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13340916	X_13340916_SNP [dm3] X_13446883_SNP [dm6]	G	C	3.616e^-4	0.984	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26277814	3R_26277814_SNP [dm3] 3R_30452092_SNP [dm6]	G	A	3.616e^-4	0.984	INTRON aralar1
2L	7971312	2L_7971312_SNP [dm3] 2L_7971312_SNP [dm6]	G	T	3.633e^-4	0.984	INTRON Snoo
3L	21858162	3L_21858162_SNP [dm3] 3L_21865062_SNP [dm6]	C	G	3.648e^-4	0.984	INTRON mub
3L	22248608	3L_22248608_SNP [dm3] 3L_22255508_SNP [dm6]	A	G	3.652e^-4	0.984	INTERGENIC
2R	17795891	2R_17795891_SNP [dm3] 2R_21908386_SNP [dm6]	A	T	3.655e^-4	0.984	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5332253	2R_5332253_SNP [dm3] 2R_9444748_SNP [dm6]	G	C	3.656e^-4	0.984	UTR_5_PRIME ced-6 DOWNSTREAM CR45321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9280779	3L_9280779_SNP [dm3] 3L_9287679_SNP [dm6]	G	A	3.663e^-4	0.984	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
2L	4771815	2L_4771815_SNP [dm3] 2L_4771815_SNP [dm6]	T	C	3.664e^-4	0.984	INTRON CG15630
3R	24367021	3R_24367021_SNP [dm3] 3R_28541299_SNP [dm6]	A	C	3.668e^-4	0.984	UPSTREAM Ppn DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5372800	2L_5372800_SNP [dm3] 2L_5372800_SNP [dm6]	G	C	3.672e^-4	0.984	INTERGENIC
3L	7387968	3L_7387968_SNP [dm3] 3L_7394868_SNP [dm6]	C	T	3.673e^-4	0.984	INTRON CG8563
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	3.675e^-4	0.984	INTRON rols
3L	5241782	3L_5241782_SNP [dm3] 3L_5248682_SNP [dm6]	T	C	3.675e^-4	0.984	UPSTREAM shep INTRON shep
3L	2889773	3L_2889773_SNP [dm3] 3L_2889773_SNP [dm6]	T	A	3.686e^-4	0.984	INTRON spz5
X	10030128	X_10030128_SNP [dm3] X_10136095_SNP [dm6]	C	T	3.704e^-4	0.984	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7969254	2L_7969254_SNP [dm3] 2L_7969254_SNP [dm6]	G	C	3.707e^-4	0.984	INTRON Snoo
2L	2942370	2L_2942370_SNP [dm3] 2L_2942370_SNP [dm6]	G	A	3.708e^-4	0.984	INTRON lilli
2L	7755332	2L_7755332_SNP [dm3] 2L_7755332_SNP [dm6]	A	G	3.710e^-4	0.984	UPSTREAM CG14538 INTRON CG7196
3L	11038097	3L_11038097_SNP [dm3] 3L_11044997_SNP [dm6]	C	G	3.718e^-4	0.984	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9103284	2L_9103284_SNP [dm3] 2L_9103284_SNP [dm6]	G	T	3.727e^-4	0.984	INTERGENIC
2L	16915231	2L_16915231_SNP [dm3] 2L_16915231_SNP [dm6]	G	T	3.735e^-4	0.984	SYNONYMOUS_CODING tweek
X	2446972	X_2446972_SNP [dm3] X_2552939_SNP [dm6]	C	T	3.741e^-4	0.984	INTRON Pdfr
X	19616301	X_19616301_SNP [dm3] X_19722268_SNP [dm6]	A	T	3.742e^-4	0.984	INTRON CG12531	TF binding site mE1_TFBS_chinmo
X	16542044	X_16542044_DEL [dm3] X_16648011_DEL [dm6]	GTGTG	G	3.745e^-4	0.984	UTR_3_PRIME mthl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16979863	2R_16979863_SNP [dm3] 2R_21092358_SNP [dm6]	A	T	3.747e^-4	0.984	UTR_5_PRIME CG34396
3R	16912208	3R_16912208_SNP [dm3] 3R_21086486_SNP [dm6]	A	C	3.763e^-4	0.984	NON_SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	5967172	2L_5967172_SNP [dm3] 2L_5967172_SNP [dm6]	G	A	3.786e^-4	0.984	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12875566	3L_12875566_INS [dm3] 3L_12882466_INS [dm6]	C	CCC	3.790e^-4	0.984	INTERGENIC
2R	7170764	2R_7170764_SNP [dm3] 2R_11283259_SNP [dm6]	G	T	3.793e^-4	0.984	SYNONYMOUS_CODING CG9062	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3R	26280554	3R_26280554_SNP [dm3] 3R_30454832_SNP [dm6]	G	A	3.796e^-4	0.984	INTRON aralar1
X	7989580	X_7989580_SNP [dm3] X_8095547_SNP [dm6]	A	T	3.804e^-4	0.984	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
3R	22247235	3R_22247235_SNP [dm3] 3R_26421513_SNP [dm6]	T	C	3.814e^-4	0.984	INTERGENIC
3R	25374269	3R_25374269_SNP [dm3] 3R_29548547_SNP [dm6]	T	C	3.815e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8752493	3R_8752493_DEL [dm3] 3R_12926771_DEL [dm6]	CGAA	C	3.825e^-4	0.984	INTRON beat-Vb
3R	8752500	3R_8752500_DEL [dm3] 3R_12926778_DEL [dm6]	AAAGG	A	3.825e^-4	0.984	INTRON beat-Vb
3R	8752506	3R_8752506_SNP [dm3] 3R_12926784_SNP [dm6]	A	T	3.825e^-4	0.984	INTRON beat-Vb
X	8018192	X_8018192_SNP [dm3] X_8124159_SNP [dm6]	T	C	3.828e^-4	0.984	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7409959	2L_7409959_SNP [dm3] 2L_7409959_SNP [dm6]	T	C	3.857e^-4	0.984	UPSTREAM CG5181 & 1 other INTERGENIC
2L	7409961	2L_7409961_SNP [dm3] 2L_7409961_SNP [dm6]	T	A	3.857e^-4	0.984	UPSTREAM CG5181 & 1 other INTERGENIC
3L	15265391	3L_15265391_SNP [dm3] 3L_15272291_SNP [dm6]	C	T	3.865e^-4	0.984	INTERGENIC
3L	18919722	3L_18919722_SNP [dm3] 3L_18926622_SNP [dm6]	A	T	3.879e^-4	0.984	DOWNSTREAM CG43049 INTRON CG32204
2R	7173919	2R_7173919_SNP [dm3] 2R_11286414_SNP [dm6]	C	T	3.879e^-4	0.984	INTRON fbl6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16920170	X_16920170_DEL [dm3] X_17026137_DEL [dm6]	TCTGTAA	T	3.879e^-4	0.984	INTRON CG45002
2R	12364760	2R_12364760_SNP [dm3] 2R_16477255_SNP [dm6]	T	A	3.884e^-4	0.984	INTERGENIC
3R	24367024	3R_24367024_SNP [dm3] 3R_28541302_SNP [dm6]	C	T	3.894e^-4	0.984	UPSTREAM Ppn DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24248142	3R_24248142_SNP [dm3] 3R_28422420_SNP [dm6]	C	A	3.895e^-4	0.984	INTRON beat-VI
X	6297645	X_6297645_SNP [dm3] X_6403612_SNP [dm6]	A	C	3.908e^-4	0.984	INTERGENIC
3R	20729845	3R_20729845_SNP [dm3] 3R_24904123_SNP [dm6]	T	C	3.909e^-4	0.984	INTRON CG13643
3L	6011592	3L_6011592_SNP [dm3] 3L_6018492_SNP [dm6]	C	A	3.924e^-4	0.984	INTRON PVRAP
3R	12953617	3R_12953617_SNP [dm3] 3R_17127895_SNP [dm6]	A	G	3.942e^-4	0.984	UPSTREAM CG17477 & 2 others INTRON CG31269
3L	6960258	3L_6960258_SNP [dm3] 3L_6967158_SNP [dm6]	G	C	3.944e^-4	0.984	SYNONYMOUS_CODING CG10064 DOWNSTREAM Mis12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8426730	X_8426730_DEL [dm3] X_8532697_DEL [dm6]	GAAAGAG	G	3.945e^-4	0.984	INTRON Nrg
3L	10402108	3L_10402108_SNP [dm3] 3L_10409008_SNP [dm6]	T	C	3.963e^-4	0.984	INTERGENIC
3L	6961726	3L_6961726_SNP [dm3] 3L_6968626_SNP [dm6]	G	A	3.991e^-4	0.984	SYNONYMOUS_CODING Mis12 UPSTREAM CG10064
2R	13138377	2R_13138377_SNP [dm3] 2R_17250872_SNP [dm6]	C	G	3.993e^-4	0.984	INTRON mbl
2R	11453740	2R_11453740_SNP [dm3] 2R_15566235_SNP [dm6]	T	C	4.009e^-4	0.984	UPSTREAM CG8195 DOWNSTREAM Flo1 INTERGENIC
2L	10681455	2L_10681455_DEL [dm3] 2L_10681455_DEL [dm6]	ACTTTTGCCAAAC...	A	4.022e^-4	0.984	UTR_3_PRIME CG17105 UPSTREAM CR44180 & 1 other DOWNSTREAM CG17105
2L	10681468	2L_10681468_INS [dm3] 2L_10681468_INS [dm6]	G	GAAGA	4.022e^-4	0.984	UTR_3_PRIME CG17105 UPSTREAM CR44180 & 1 other DOWNSTREAM CG17105
2R	10841347	2R_10841347_SNP [dm3] 2R_14953842_SNP [dm6]	A	T	4.027e^-4	0.984	INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16702678	3L_16702678_SNP [dm3] 3L_16709578_SNP [dm6]	C	A	4.040e^-4	0.984	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	2597681	2L_2597681_SNP [dm3] 2L_2597681_SNP [dm6]	A	C	4.045e^-4	0.984	DOWNSTREAM CR44790 INTERGENIC
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	4.047e^-4	0.984	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9094405	2L_9094405_SNP [dm3] 2L_9094405_SNP [dm6]	G	T	4.055e^-4	0.984	INTERGENIC
2L	20524897	2L_20524897_INS [dm3] 2L_20524897_INS [dm6]	A	AACAA	4.055e^-4	0.984	INTERGENIC
3R	11076877	3R_11076877_SNP [dm3] 3R_15251155_SNP [dm6]	G	T	4.064e^-4	0.984	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18062075	2R_18062075_SNP [dm3] 2R_22174570_SNP [dm6]	C	T	4.069e^-4	0.984	SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8998808	3R_8998808_SNP [dm3] 3R_13173086_SNP [dm6]	T	C	4.070e^-4	0.984	INTERGENIC
2L	16088025	2L_16088025_SNP [dm3] 2L_16088025_SNP [dm6]	A	G	4.074e^-4	0.984	INTERGENIC
2R	4896581	2R_4896581_SNP [dm3] 2R_9009076_SNP [dm6]	G	A	4.074e^-4	0.984	SYNONYMOUS_CODING CG8172 UTR_5_PRIME CG8172 INTRON CG8172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12438709	2R_12438709_SNP [dm3] 2R_16551204_SNP [dm6]	T	A	4.078e^-4	0.984	INTERGENIC
3R	10401891	3R_10401891_SNP [dm3] 3R_14576169_SNP [dm6]	C	T	4.079e^-4	0.984	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9833387	2L_9833387_SNP [dm3] 2L_9833387_SNP [dm6]	T	C	4.083e^-4	0.984	INTRON nAChRalpha6
2L	9833395	2L_9833395_SNP [dm3] 2L_9833395_SNP [dm6]	T	G	4.083e^-4	0.984	INTRON nAChRalpha6
2L	12553387	2L_12553387_SNP [dm3] 2L_12553387_SNP [dm6]	T	A	4.087e^-4	0.984	INTERGENIC
X	16854308	X_16854308_SNP [dm3] X_16960275_SNP [dm6]	G	A	4.094e^-4	0.984	SPLICE_SITE_REGION CG9086 INTRON CG9086
3L	20198917	3L_20198917_SNP [dm3] 3L_20205817_SNP [dm6]	C	G	4.113e^-4	0.984	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3444567	2L_3444567_SNP [dm3] 2L_3444567_SNP [dm6]	A	G	4.134e^-4	0.984	INTERGENIC
2L	16765021	2L_16765021_DEL [dm3] 2L_16765021_DEL [dm6]	CTTTACAAGTACAACAAATA...	C	4.165e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs
2L	15541871	2L_15541871_DEL [dm3] 2L_15541871_DEL [dm6]	AAGTCTTCAGACGTACTTCC...	A	4.170e^-4	0.984	INTERGENIC
3R	24524178	3R_24524178_SNP [dm3] 3R_28698456_SNP [dm6]	A	T	4.173e^-4	0.984	INTRON htt
3L	615024	3L_615024_SNP [dm3] 3L_615024_SNP [dm6]	T	A	4.185e^-4	0.984	DOWNSTREAM CR42719 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6960435	3L_6960435_SNP [dm3] 3L_6967335_SNP [dm6]	G	A	4.186e^-4	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960440	3L_6960440_SNP [dm3] 3L_6967340_SNP [dm6]	C	T	4.186e^-4	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6960442	3L_6960442_SNP [dm3] 3L_6967342_SNP [dm6]	T	G	4.186e^-4	0.984	DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5338042	X_5338042_SNP [dm3] X_5444009_SNP [dm6]	T	G	4.193e^-4	0.984	INTERGENIC
3R	22365659	3R_22365659_SNP [dm3] 3R_26539937_SNP [dm6]	T	C	4.205e^-4	0.984	INTRON scrib	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	22365687	3R_22365687_SNP [dm3] 3R_26539965_SNP [dm6]	C	T	4.205e^-4	0.984	INTRON scrib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22365717	3R_22365717_INS [dm3] 3R_26539995_INS [dm6]	G	GAA	4.205e^-4	0.984	INTRON scrib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16096811	X_16096811_SNP [dm3] X_16202778_SNP [dm6]	T	C	4.210e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19104825	2R_19104825_SNP [dm3] 2R_23217302_SNP [dm6]	A	G	4.211e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18459196	3L_18459196_SNP [dm3] 3L_18466096_SNP [dm6]	G	T	4.215e^-4	0.984	INTERGENIC
3R	26280057	3R_26280057_SNP [dm3] 3R_30454335_SNP [dm6]	A	C	4.224e^-4	0.984	UPSTREAM aralar1 INTRON aralar1
3L	19019237	3L_19019237_SNP [dm3] 3L_19026137_SNP [dm6]	G	A	4.226e^-4	0.984	INTRON nkd
3L	11048559	3L_11048559_SNP [dm3] 3L_11055459_SNP [dm6]	A	G	4.227e^-4	0.984	UPSTREAM CG7888 INTRON CG7888
3L	1400611	3L_1400611_SNP [dm3] 3L_1400611_SNP [dm6]	C	G	4.227e^-4	0.984	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad INTRON Ptp61F
3L	1400773	3L_1400773_SNP [dm3] 3L_1400773_SNP [dm6]	T	A	4.227e^-4	0.984	UPSTREAM tRNA:E4:62Ad INTRON Ptp61F & 1 other
3L	1401141	3L_1401141_SNP [dm3] 3L_1401141_SNP [dm6]	A	T	4.227e^-4	0.984	NON_SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	1401532	3L_1401532_SNP [dm3] 3L_1401532_SNP [dm6]	T	C	4.227e^-4	0.984	UTR_3_PRIME CG32320 UPSTREAM tRNA:E4:62Ae DOWNSTREAM tRNA:E4:62Ad INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1401696	3L_1401696_DEL [dm3] 3L_1401696_DEL [dm6]	AATAGAACGCCCA...	CGTTCTCTTT	4.227e^-4	0.984	UPSTREAM tRNA:E4:62Ae DOWNSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1401892	3L_1401892_SNP [dm3] 3L_1401892_SNP [dm6]	G	A	4.227e^-4	0.984	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1402062	3L_1402062_SNP [dm3] 3L_1402062_SNP [dm6]	T	G	4.227e^-4	0.984	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16490877	3L_16490877_SNP [dm3] 3L_16497777_SNP [dm6]	C	T	4.227e^-4	0.984	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad
3L	22232878	3L_22232878_SNP [dm3] 3L_22239778_SNP [dm6]	C	T	4.227e^-4	0.984	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3360795	3L_3360795_SNP [dm3] 3L_3360795_SNP [dm6]	G	A	4.227e^-4	0.984	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	3361980	3L_3361980_SNP [dm3] 3L_3361980_SNP [dm6]	A	G	4.227e^-4	0.984	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	5364850	3L_5364850_SNP [dm3] 3L_5371750_SNP [dm6]	G	C	4.227e^-4	0.984	UPSTREAM CR44516 INTERGENIC
3L	5443016	3L_5443016_SNP [dm3] 3L_5449916_SNP [dm6]	C	T	4.227e^-4	0.984	INTERGENIC
3L	6965817	3L_6965817_SNP [dm3] 3L_6972717_SNP [dm6]	A	G	4.227e^-4	0.984	UPSTREAM CG10063 DOWNSTREAM Galphai INTERGENIC
3L	6966838	3L_6966838_SNP [dm3] 3L_6973738_SNP [dm6]	A	G	4.227e^-4	0.984	SYNONYMOUS_CODING Galphai	TF binding site mE1_TFBS_sens
3L	8312353	3L_8312353_SNP [dm3] 3L_8319253_SNP [dm6]	T	G	4.227e^-4	0.984	UPSTREAM CG43059 INTERGENIC
3L	8312470	3L_8312470_SNP [dm3] 3L_8319370_SNP [dm6]	T	C	4.227e^-4	0.984	UPSTREAM CG43059 INTERGENIC
3L	9775317	3L_9775317_SNP [dm3] 3L_9782217_SNP [dm6]	G	A	4.227e^-4	0.984	DOWNSTREAM CG8177 INTRON CG8177
3R	19555451	3R_19555451_SNP [dm3] 3R_23729729_SNP [dm6]	G	A	4.227e^-4	0.984	DOWNSTREAM RNaseMRP:RNA INTRON CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19918570	3R_19918570_SNP [dm3] 3R_24092848_SNP [dm6]	A	G	4.227e^-4	0.984	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20306824	3R_20306824_SNP [dm3] 3R_24481102_SNP [dm6]	T	A	4.227e^-4	0.984	INTERGENIC
3R	22557690	3R_22557690_SNP [dm3] 3R_26731968_SNP [dm6]	G	T	4.227e^-4	0.984	INTERGENIC
3R	22867740	3R_22867740_SNP [dm3] 3R_27042018_SNP [dm6]	G	T	4.227e^-4	0.984	INTRON RYa-R
3R	22867744	3R_22867744_SNP [dm3] 3R_27042022_SNP [dm6]	A	G	4.227e^-4	0.984	INTRON RYa-R
X	13796293	X_13796293_SNP [dm3] X_13902260_SNP [dm6]	C	T	4.227e^-4	0.984	INTRON mamo
X	4188186	X_4188186_SNP [dm3] X_4294153_SNP [dm6]	G	C	4.227e^-4	0.984	INTERGENIC
X	5523304	X_5523304_SNP [dm3] X_5629271_SNP [dm6]	G	T	4.227e^-4	0.984	UTR_3_PRIME CG42492 INTRON CG42492
X	5585220	X_5585220_SNP [dm3] X_5691187_SNP [dm6]	A	C	4.227e^-4	0.984	UPSTREAM CR45525 INTRON cv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15766748	3L_15766748_SNP [dm3] 3L_15773648_SNP [dm6]	A	T	4.236e^-4	0.984	INTERGENIC
3L	5279341	3L_5279341_SNP [dm3] 3L_5286241_SNP [dm6]	T	C	4.237e^-4	0.984	INTERGENIC
3L	8776784	3L_8776784_SNP [dm3] 3L_8783684_SNP [dm6]	A	G	4.239e^-4	0.984	INTRON Fhos
2R	9888434	2R_9888434_SNP [dm3] 2R_14000929_SNP [dm6]	G	A	4.242e^-4	0.984	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16711333	3R_16711333_INS [dm3] 3R_20885611_INS [dm6]	C	CTAGTTTC	4.248e^-4	0.984	INTERGENIC
3L	4873980	3L_4873980_SNP [dm3] 3L_4873980_SNP [dm6]	T	C	4.255e^-4	0.984	INTRON CG17150	TF binding site mE1_TFBS_chinmo
2L	7192465	2L_7192465_SNP [dm3] 2L_7192465_SNP [dm6]	T	C	4.263e^-4	0.984	INTRON CG4497
3L	10823255	3L_10823255_SNP [dm3] 3L_10830155_SNP [dm6]	A	T	4.266e^-4	0.984	INTERGENIC
3L	5399980	3L_5399980_SNP [dm3] 3L_5406880_SNP [dm6]	G	C	4.266e^-4	0.984	INTERGENIC
3L	5399981	3L_5399981_SNP [dm3] 3L_5406881_SNP [dm6]	C	T	4.266e^-4	0.984	INTERGENIC
3R	16711375	3R_16711375_SNP [dm3] 3R_20885653_SNP [dm6]	G	T	4.271e^-4	0.984	INTERGENIC
3L	16410413	3L_16410413_SNP [dm3] 3L_16417313_SNP [dm6]	T	C	4.280e^-4	0.984	UPSTREAM CG4573 DOWNSTREAM Aats-tyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15322278	3R_15322278_SNP [dm3] 3R_19496556_SNP [dm6]	G	C	4.310e^-4	0.984	INTRON Dys
2R	12488161	2R_12488161_INS [dm3] 2R_16600656_INS [dm6]	C	CC	4.312e^-4	0.984	DOWNSTREAM CG5089 INTRON CG8303
2L	10415154	2L_10415154_SNP [dm3] 2L_10415154_SNP [dm6]	A	G	4.318e^-4	0.984	SYNONYMOUS_CODING Klp31E
2L	10415157	2L_10415157_SNP [dm3] 2L_10415157_SNP [dm6]	G	A	4.318e^-4	0.984	SYNONYMOUS_CODING Klp31E
2L	12234781	2L_12234781_SNP [dm3] 2L_12234781_SNP [dm6]	C	T	4.322e^-4	0.984	INTRON aret
2L	6121880	2L_6121880_SNP [dm3] 2L_6121880_SNP [dm6]	T	C	4.332e^-4	0.984	SYNONYMOUS_CODING stai
3R	11738186	3R_11738186_SNP [dm3] 3R_15912464_SNP [dm6]	T	C	4.335e^-4	0.984	INTRON CG45105
2R	12295214	2R_12295214_SNP [dm3] 2R_16407709_SNP [dm6]	G	A	4.339e^-4	0.984	INTRON Sema-2b
3R	13679656	3R_13679656_SNP [dm3] 3R_17853934_SNP [dm6]	T	A	4.362e^-4	0.984	INTRON tinc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11738205	3R_11738205_SNP [dm3] 3R_15912483_SNP [dm6]	G	T	4.369e^-4	0.984	INTRON CG45105
2L	10571915	2L_10571915_SNP [dm3] 2L_10571915_SNP [dm6]	C	T	4.369e^-4	0.984	INTRON Trim9
3R	14112135	3R_14112135_SNP [dm3] 3R_18286413_SNP [dm6]	A	G	4.370e^-4	0.984	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
3L	11946404	3L_11946404_SNP [dm3] 3L_11953304_SNP [dm6]	G	A	4.374e^-4	0.984	UTR_5_PRIME obst-G UPSTREAM CG7248
2R	720771	2R_720771_SNP [dm3] 2R_4833266_SNP [dm6]	T	A	4.377e^-4	0.984	INTERGENIC	transposable element FlyBase
3L	10020359	3L_10020359_SNP [dm3] 3L_10027259_SNP [dm6]	A	G	4.407e^-4	0.984	INTRON dpr6
2L	19144367	2L_19144367_SNP [dm3] 2L_19144367_SNP [dm6]	T	A	4.413e^-4	0.984	INTRON brat
2R	18062080	2R_18062080_SNP [dm3] 2R_22174575_SNP [dm6]	C	T	4.431e^-4	0.984	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4024642	2L_4024642_DEL [dm3] 2L_4024642_DEL [dm6]	GGTG	A	4.434e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10955161	2R_10955161_INS [dm3] 2R_15067656_INS [dm6]	C	CC	4.439e^-4	0.984	INTERGENIC
3R	19132562	3R_19132562_INS [dm3] 3R_23306840_INS [dm6]	C	CTAC	4.447e^-4	0.984	INTRON pnt
3R	13758087	3R_13758087_SNP [dm3] 3R_17932365_SNP [dm6]	C	A	4.465e^-4	0.984	UTR_5_PRIME cpo INTRON cpo
3R	25547286	3R_25547286_MNP [dm3] 3R_29721564_MNP [dm6]	GAA	TTT	4.502e^-4	0.984	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
2R	16623659	2R_16623659_SNP [dm3] 2R_20736154_SNP [dm6]	T	C	4.503e^-4	0.984	INTRON dpr
X	5041634	X_5041634_SNP [dm3] X_5147601_SNP [dm6]	C	A	4.509e^-4	0.984	INTRON rg & 1 other
2L	5843234	2L_5843234_SNP [dm3] 2L_5843234_SNP [dm6]	T	A	4.513e^-4	0.984	INTRON TrissinR
2L	5844805	2L_5844805_DEL [dm3] 2L_5844805_DEL [dm6]	GTGG	G	4.513e^-4	0.984	INTRON TrissinR
3R	22523320	3R_22523320_SNP [dm3] 3R_26697598_SNP [dm6]	T	C	4.532e^-4	0.984	DOWNSTREAM amon INTERGENIC
3R	12855249	3R_12855249_SNP [dm3] 3R_17029527_SNP [dm6]	T	C	4.534e^-4	0.984	INTRON CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22177582	X_22177582_INS [dm3] X_22775746_INS [dm6]	A	AA	4.544e^-4	0.984	INTRON CR44997
3R	10895021	3R_10895021_SNP [dm3] 3R_15069299_SNP [dm6]	G	A	4.548e^-4	0.984	INTRON dpr9
3R	14847069	3R_14847069_SNP [dm3] 3R_19021347_SNP [dm6]	C	G	4.549e^-4	0.984	SYNONYMOUS_CODING gukh UTR_3_PRIME gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11945477	2L_11945477_SNP [dm3] 2L_11945477_SNP [dm6]	G	A	4.553e^-4	0.984	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11945507	2L_11945507_SNP [dm3] 2L_11945507_SNP [dm6]	G	A	4.553e^-4	0.984	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11945591	2L_11945591_SNP [dm3] 2L_11945591_SNP [dm6]	C	A	4.553e^-4	0.984	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11947420	2L_11947420_DEL [dm3] 2L_11947420_DEL [dm6]	TCT	T	4.553e^-4	0.984	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	16623693	2R_16623693_SNP [dm3] 2R_20736188_SNP [dm6]	G	A	4.557e^-4	0.984	INTRON dpr
2L	1974066	2L_1974066_SNP [dm3] 2L_1974066_SNP [dm6]	C	A	4.567e^-4	0.984	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10969685	3R_10969685_SNP [dm3] 3R_15143963_SNP [dm6]	T	A	4.585e^-4	0.984	INTRON GlyS
X	18652381	X_18652381_SNP [dm3] X_18758348_SNP [dm6]	A	T	4.586e^-4	0.984	INTERGENIC
X	2444057	X_2444057_SNP [dm3] X_2550024_SNP [dm6]	G	C	4.589e^-4	0.984	INTERGENIC
X	2444068	X_2444068_SNP [dm3] X_2550035_SNP [dm6]	A	G	4.589e^-4	0.984	INTERGENIC
3L	7759714	3L_7759714_SNP [dm3] 3L_7766614_SNP [dm6]	A	G	4.589e^-4	0.984	SYNONYMOUS_CODING Clk DOWNSTREAM CG32371
3L	10843301	3L_10843301_SNP [dm3] 3L_10850201_SNP [dm6]	A	G	4.592e^-4	0.984	EXON CR45169	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9417953	3L_9417953_SNP [dm3] 3L_9424853_SNP [dm6]	G	A	4.598e^-4	0.984	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_cad
3L	9417956	3L_9417956_SNP [dm3] 3L_9424856_SNP [dm6]	A	T	4.598e^-4	0.984	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_cad
3L	18034955	3L_18034955_SNP [dm3] 3L_18041855_SNP [dm6]	G	A	4.608e^-4	0.984	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3L	12482013	3L_12482013_SNP [dm3] 3L_12488913_SNP [dm6]	C	T	4.610e^-4	0.984	NON_SYNONYMOUS_CODING CG10660
3L	18136972	3L_18136972_SNP [dm3] 3L_18143872_SNP [dm6]	A	T	4.624e^-4	0.984	INTRON gk
X	11371686	X_11371686_SNP [dm3] X_11477653_SNP [dm6]	C	T	4.636e^-4	0.984	SYNONYMOUS_CODING Cyp4g15
3L	5143011	3L_5143011_SNP [dm3] 3L_5149911_SNP [dm6]	G	A	4.639e^-4	0.984	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_sens
3L	5143029	3L_5143029_SNP [dm3] 3L_5149929_SNP [dm6]	G	A	4.639e^-4	0.984	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_sens
2L	2411677	2L_2411677_SNP [dm3] 2L_2411677_SNP [dm6]	A	G	4.652e^-4	0.984	SYNONYMOUS_CODING CG18641	TF binding site mE1_TFBS_cad
2L	6469508	2L_6469508_SNP [dm3] 2L_6469508_SNP [dm6]	A	G	4.652e^-4	0.984	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2727192	3L_2727192_INS [dm3] 3L_2727192_INS [dm6]	T	TT	4.657e^-4	0.984	INTRON Mrtf
X	3875366	X_3875366_SNP [dm3] X_3981333_SNP [dm6]	T	A	4.673e^-4	0.984	INTERGENIC
3R	23117783	3R_23117783_SNP [dm3] 3R_27292061_SNP [dm6]	A	T	4.683e^-4	0.984	DOWNSTREAM Hmu INTRON CG3348
2L	16915854	2L_16915854_SNP [dm3] 2L_16915854_SNP [dm6]	A	T	4.685e^-4	0.984	INTRON tweek
3L	14005574	3L_14005574_SNP [dm3] 3L_14012474_SNP [dm6]	C	A	4.686e^-4	0.984	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22272814	3R_22272814_SNP [dm3] 3R_26447092_SNP [dm6]	T	C	4.716e^-4	0.984	INTRON tx
3R	2899318	3R_2899318_SNP [dm3] 3R_7073596_SNP [dm6]	G	A	4.728e^-4	0.984	SYNONYMOUS_CODING CG1104	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12661127	3L_12661127_SNP [dm3] 3L_12668027_SNP [dm6]	C	G	4.742e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1038396	3L_1038396_SNP [dm3] 3L_1038396_SNP [dm6]	T	C	4.744e^-4	0.984	NON_SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	8989823	3R_8989823_SNP [dm3] 3R_13164101_SNP [dm6]	C	T	4.754e^-4	0.984	DOWNSTREAM timeout INTERGENIC
X	5042102	X_5042102_DEL [dm3] X_5148069_DEL [dm6]	ATTTATT	A	4.766e^-4	0.984	INTRON rg & 1 other
3L	8685145	3L_8685145_SNP [dm3] 3L_8692045_SNP [dm6]	A	G	4.768e^-4	0.984	UPSTREAM CR44526 INTERGENIC
3L	7796337	3L_7796337_SNP [dm3] 3L_7803237_SNP [dm6]	T	A	4.773e^-4	0.984	INTRON CG32369	TF binding site mE1_TFBS_cad
3L	6576961	3L_6576961_SNP [dm3] 3L_6583861_SNP [dm6]	A	G	4.774e^-4	0.984	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3R	19676546	3R_19676546_SNP [dm3] 3R_23850824_SNP [dm6]	A	G	4.775e^-4	0.984	UTR_3_PRIME CG34355
2R	12366382	2R_12366382_SNP [dm3] 2R_16478877_SNP [dm6]	T	C	4.776e^-4	0.984	INTERGENIC
X	14942975	X_14942975_SNP [dm3] X_15048942_SNP [dm6]	C	T	4.785e^-4	0.984	START_GAINED CG5541 UTR_5_PRIME CG5541 INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18078006	2R_18078006_SNP [dm3] 2R_22190501_SNP [dm6]	G	A	4.820e^-4	0.984	SPLICE_SITE_REGION Swim SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
2R	18078084	2R_18078084_SNP [dm3] 2R_22190579_SNP [dm6]	C	T	4.820e^-4	0.984	SPLICE_SITE_REGION Swim DOWNSTREAM Vps35 INTRON Swim	TF binding site mE1_TFBS_cad
2R	18078267	2R_18078267_SNP [dm3] 2R_22190762_SNP [dm6]	G	A	4.820e^-4	0.984	SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13271093	2L_13271093_SNP [dm3] 2L_13271093_SNP [dm6]	T	A	4.821e^-4	0.984	INTRON CG44085
3R	26277969	3R_26277969_SNP [dm3] 3R_30452247_SNP [dm6]	C	G	4.828e^-4	0.984	INTRON aralar1
3L	11175069	3L_11175069_SNP [dm3] 3L_11181969_SNP [dm6]	A	T	4.837e^-4	0.984	INTRON GlcAT-P
3R	18928696	3R_18928696_SNP [dm3] 3R_23102974_SNP [dm6]	A	C	4.851e^-4	0.984	INTRON CG13830
3R	8998807	3R_8998807_SNP [dm3] 3R_13173085_SNP [dm6]	A	C	4.852e^-4	0.984	INTERGENIC
3R	20729565	3R_20729565_SNP [dm3] 3R_24903843_SNP [dm6]	G	A	4.856e^-4	0.984	DOWNSTREAM CG10845 INTRON CG13643	TF binding site mE1_TFBS_cad
2R	16864328	2R_16864328_SNP [dm3] 2R_20976823_SNP [dm6]	C	T	4.859e^-4	0.984	SYNONYMOUS_CODING CG34115 UPSTREAM CG9344 DOWNSTREAM CG15650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	500928	3R_500928_DEL [dm3] 3R_4675206_DEL [dm6]	AAA	A	4.860e^-4	0.984	DOWNSTREAM CR44157 INTRON CG43427
X	17718102	X_17718102_SNP [dm3] X_17824069_SNP [dm6]	T	C	4.862e^-4	0.984	SYNONYMOUS_CODING Socs16D	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14357514	3L_14357514_SNP [dm3] 3L_14364414_SNP [dm6]	C	A	4.864e^-4	0.984	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14357522	3L_14357522_SNP [dm3] 3L_14364422_SNP [dm6]	T	C	4.864e^-4	0.984	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21862174	2L_21862174_SNP [dm3] 2L_21862174_SNP [dm6]	T	C	4.875e^-4	0.984	INTRON CR44917
2L	3536023	2L_3536023_SNP [dm3] 2L_3536023_SNP [dm6]	C	T	4.883e^-4	0.984	INTERGENIC
2R	16955597	2R_16955597_SNP [dm3] 2R_21068092_SNP [dm6]	G	T	4.884e^-4	0.984	SYNONYMOUS_CODING Cht9 UPSTREAM CR44703	TF binding site mE1_TFBS_cad
X	8327720	X_8327720_INS [dm3] X_8433687_INS [dm6]	C	CAGAAGAATAGCGTTC...	4.904e^-4	0.984	DOWNSTREAM CG12125 & 1 other INTRON CG32712
X	8327738	X_8327738_SNP [dm3] X_8433705_SNP [dm6]	A	G	4.904e^-4	0.984	DOWNSTREAM CG12125 & 1 other INTRON CG32712
2L	6044607	2L_6044607_SNP [dm3] 2L_6044607_SNP [dm6]	C	T	4.910e^-4	0.984	NON_SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7172814	2R_7172814_SNP [dm3] 2R_11285309_SNP [dm6]	T	C	4.920e^-4	0.984	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
3R	20027318	3R_20027318_SNP [dm3] 3R_24201596_SNP [dm6]	T	C	4.920e^-4	0.984	UPSTREAM twin INTRON twin
2R	20213787	2R_20213787_SNP [dm3] 2R_24326264_SNP [dm6]	A	G	4.931e^-4	0.984	INTRON CR44810
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	4.938e^-4	0.984	INTRON sff
2L	2186388	2L_2186388_SNP [dm3] 2L_2186388_SNP [dm6]	A	G	4.938e^-4	0.984	UPSTREAM tRNA:CR31946 DOWNSTREAM CR43751 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17248248	3R_17248248_SNP [dm3] 3R_21422526_SNP [dm6]	G	A	4.950e^-4	0.984	INTRON lbl
3R	11502731	3R_11502731_SNP [dm3] 3R_15677009_SNP [dm6]	C	T	4.958e^-4	0.984	INTRON pxb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5702117	2L_5702117_MNP [dm3] 2L_5702117_MNP [dm6]	GGTT	AACA	4.984e^-4	0.984	INTERGENIC
3R	21995580	3R_21995580_SNP [dm3] 3R_26169858_SNP [dm6]	G	A	4.985e^-4	0.984	UPSTREAM CG31323 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6542833	3R_6542833_DEL [dm3] 3R_10717111_DEL [dm6]	CT	C	4.988e^-4	0.984	INTERGENIC
X	10215572	X_10215572_SNP [dm3] X_10321539_SNP [dm6]	G	A	4.999e^-4	0.984	INTRON alpha-Man-I
X	10216836	X_10216836_SNP [dm3] X_10322803_SNP [dm6]	A	G	4.999e^-4	0.984	INTRON alpha-Man-I
X	10216849	X_10216849_SNP [dm3] X_10322816_SNP [dm6]	A	T	4.999e^-4	0.984	INTRON alpha-Man-I
X	10216895	X_10216895_SNP [dm3] X_10322862_SNP [dm6]	T	A	4.999e^-4	0.984	INTRON alpha-Man-I
X	10218218	X_10218218_SNP [dm3] X_10324185_SNP [dm6]	A	G	4.999e^-4	0.984	UTR_5_PRIME alpha-Man-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	10219664	X_10219664_SNP [dm3] X_10325631_SNP [dm6]	A	C	4.999e^-4	0.984	SPLICE_SITE_DONOR alpha-Man-I UPSTREAM CG2909 INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10221245	X_10221245_SNP [dm3] X_10327212_SNP [dm6]	G	A	4.999e^-4	0.984	NON_SYNONYMOUS_CODING CG2909	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10221271	X_10221271_SNP [dm3] X_10327238_SNP [dm6]	G	T	4.999e^-4	0.984	SYNONYMOUS_CODING CG2909	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10221988	X_10221988_SNP [dm3] X_10327955_SNP [dm6]	G	A	4.999e^-4	0.984	SYNONYMOUS_CODING CG2909 DOWNSTREAM Gip	TF binding site mE1_TFBS_cad
X	10984469	X_10984469_SNP [dm3] X_11090436_SNP [dm6]	C	G	5.006e^-4	0.984	UTR_5_PRIME CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	10018414	3L_10018414_SNP [dm3] 3L_10025314_SNP [dm6]	C	T	5.014e^-4	0.984	INTRON dpr6
2L	1751831	2L_1751831_SNP [dm3] 2L_1751831_SNP [dm6]	A	G	5.020e^-4	0.984	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5793909	2R_5793909_SNP [dm3] 2R_9906404_SNP [dm6]	G	A	5.027e^-4	0.984	INTRON FMRFa
2R	7269364	2R_7269364_SNP [dm3] 2R_11381859_SNP [dm6]	A	G	5.028e^-4	0.984	SYNONYMOUS_CODING Sod3
2R	7270233	2R_7270233_SNP [dm3] 2R_11382728_SNP [dm6]	A	G	5.028e^-4	0.984	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	7270327	2R_7270327_SNP [dm3] 2R_11382822_SNP [dm6]	G	A	5.028e^-4	0.984	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	7270649	2R_7270649_SNP [dm3] 2R_11383144_SNP [dm6]	T	C	5.028e^-4	0.984	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	5015699	3R_5015699_SNP [dm3] 3R_9189977_SNP [dm6]	T	C	5.036e^-4	0.984	INTRON pum
3R	18334571	3R_18334571_DEL [dm3] 3R_22508849_DEL [dm6]	CC	C	5.047e^-4	0.984	INTRON Octbeta1R
3R	23393942	3R_23393942_INS [dm3] 3R_27568220_INS [dm6]	G	GG	5.050e^-4	0.984	INTRON wdb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9010239	2L_9010239_SNP [dm3] 2L_9010239_SNP [dm6]	T	C	5.056e^-4	0.984	UPSTREAM CG9568 INTERGENIC
3L	12489784	3L_12489784_SNP [dm3] 3L_12496684_SNP [dm6]	A	G	5.067e^-4	0.984	INTRON CG10657
X	8622330	X_8622330_SNP [dm3] X_8728297_SNP [dm6]	T	C	5.077e^-4	0.984	INTERGENIC
2R	15150975	2R_15150975_SNP [dm3] 2R_19263470_SNP [dm6]	T	C	5.093e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19273555	X_19273555_SNP [dm3] X_19379522_SNP [dm6]	G	A	5.107e^-4	0.984	INTRON kek5
X	15896793	X_15896793_SNP [dm3] X_16002760_SNP [dm6]	A	G	5.111e^-4	0.984	INTRON vap
2R	18060740	2R_18060740_SNP [dm3] 2R_22173235_SNP [dm6]	C	T	5.111e^-4	0.984	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a
3L	11451414	3L_11451414_SNP [dm3] 3L_11458314_SNP [dm6]	T	C	5.116e^-4	0.984	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3L	3358413	3L_3358413_SNP [dm3] 3L_3358413_SNP [dm6]	C	T	5.116e^-4	0.984	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	17054886	3R_17054886_SNP [dm3] 3R_21229164_SNP [dm6]	G	A	5.116e^-4	0.984	UTR_3_PRIME Nelf-A DOWNSTREAM e
2L	18049814	2L_18049814_SNP [dm3] 2L_18049814_SNP [dm6]	A	T	5.131e^-4	0.984	INTRON rdo
2L	10349468	2L_10349468_SNP [dm3] 2L_10349468_SNP [dm6]	A	T	5.143e^-4	0.984	INTRON CG34367
3L	16702664	3L_16702664_SNP [dm3] 3L_16709564_SNP [dm6]	T	G	5.143e^-4	0.984	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	16920187	X_16920187_SNP [dm3] X_17026154_SNP [dm6]	A	G	5.149e^-4	0.984	INTRON CG45002
3L	3950439	3L_3950439_SNP [dm3] 3L_3950439_SNP [dm6]	C	T	5.160e^-4	0.984	DOWNSTREAM CG14984 INTERGENIC
3R	12578113	3R_12578113_SNP [dm3] 3R_16752391_SNP [dm6]	C	T	5.161e^-4	0.984	UPSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26261442	3R_26261442_SNP [dm3] 3R_30435720_SNP [dm6]	G	A	5.162e^-4	0.984	SYNONYMOUS_CODING CG15537 DOWNSTREAM CG15534
2L	11359387	2L_11359387_SNP [dm3] 2L_11359387_SNP [dm6]	G	T	5.183e^-4	0.984	UTR_5_PRIME salr	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6044714	2L_6044714_SNP [dm3] 2L_6044714_SNP [dm6]	C	G	5.188e^-4	0.984	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24567007	3R_24567007_SNP [dm3] 3R_28741285_SNP [dm6]	A	G	5.191e^-4	0.984	INTRON AstA-R2
3R	24567021	3R_24567021_SNP [dm3] 3R_28741299_SNP [dm6]	G	T	5.191e^-4	0.984	INTRON AstA-R2
X	11744403	X_11744403_SNP [dm3] X_11850370_SNP [dm6]	G	A	5.191e^-4	0.984	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC	TF binding site mE1_TFBS_ttk
3R	25756260	3R_25756260_SNP [dm3] 3R_29930538_SNP [dm6]	A	C	5.192e^-4	0.984	UPSTREAM CG31202 DOWNSTREAM Cog7 INTERGENIC
3R	25756270	3R_25756270_SNP [dm3] 3R_29930548_SNP [dm6]	T	A	5.192e^-4	0.984	UPSTREAM CG31202 DOWNSTREAM Cog7 INTERGENIC
3R	25756306	3R_25756306_SNP [dm3] 3R_29930584_SNP [dm6]	T	C	5.192e^-4	0.984	UTR_3_PRIME Cog7 UPSTREAM CG31202	TF binding site mE1_TFBS_cad
3R	25756330	3R_25756330_SNP [dm3] 3R_29930608_SNP [dm6]	G	A	5.192e^-4	0.984	UTR_3_PRIME Cog7 UPSTREAM CG31202	TF binding site mE1_TFBS_cad
3R	25756350	3R_25756350_SNP [dm3] 3R_29930628_SNP [dm6]	G	A	5.192e^-4	0.984	UTR_3_PRIME Cog7 UPSTREAM CG31202	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25756354	3R_25756354_SNP [dm3] 3R_29930632_SNP [dm6]	A	T	5.192e^-4	0.984	UTR_3_PRIME Cog7 UPSTREAM CG31202	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11453412	2R_11453412_DEL [dm3] 2R_15565907_DEL [dm6]	AATGCTATTATATATAA...	A	5.194e^-4	0.984	UPSTREAM CG8195 DOWNSTREAM Flo1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12515179	2L_12515179_SNP [dm3] 2L_12515179_SNP [dm6]	G	A	5.206e^-4	0.984	INTRON bun
2R	8455132	2R_8455132_SNP [dm3] 2R_12567627_SNP [dm6]	T	C	5.207e^-4	0.984	INTRON Cyp301a1
X	16840856	X_16840856_SNP [dm3] X_16946823_SNP [dm6]	T	C	5.219e^-4	0.984	INTRON RhoGAP15B	TF binding site mE1_TFBS_zfh1
X	16844610	X_16844610_SNP [dm3] X_16950577_SNP [dm6]	G	T	5.219e^-4	0.984	INTRON RhoGAP15B
X	16844362	X_16844362_SNP [dm3] X_16950329_SNP [dm6]	C	T	5.224e^-4	0.984	INTRON RhoGAP15B
2L	1974094	2L_1974094_SNP [dm3] 2L_1974094_SNP [dm6]	T	C	5.224e^-4	0.984	START_GAINED Der-1 UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7070597	2L_7070597_SNP [dm3] 2L_7070597_SNP [dm6]	C	T	5.238e^-4	0.984	SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18044895	3R_18044895_SNP [dm3] 3R_22219173_SNP [dm6]	A	G	5.242e^-4	0.984	INTRON SKIP	TF binding site BDTNP1_TFBS_da
3R	18044896	3R_18044896_SNP [dm3] 3R_22219174_SNP [dm6]	C	G	5.242e^-4	0.984	INTRON SKIP	TF binding site BDTNP1_TFBS_da
2R	9895651	2R_9895651_SNP [dm3] 2R_14008146_SNP [dm6]	C	T	5.247e^-4	0.984	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7984758	2L_7984758_SNP [dm3] 2L_7984758_SNP [dm6]	T	A	5.278e^-4	0.984	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4093697	2L_4093697_SNP [dm3] 2L_4093697_SNP [dm6]	C	A	5.279e^-4	0.984	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	19400038	2L_19400038_SNP [dm3] 2L_19400038_SNP [dm6]	T	A	5.282e^-4	0.984	DOWNSTREAM Pax INTERGENIC	transposable element FlyBase
2L	1247689	2L_1247689_SNP [dm3] 2L_1247689_SNP [dm6]	T	C	5.291e^-4	0.984	INTERGENIC
3R	10841607	3R_10841607_SNP [dm3] 3R_15015885_SNP [dm6]	C	T	5.314e^-4	0.984	UTR_3_PRIME CG14861
2R	13051593	2R_13051593_SNP [dm3] 2R_17164088_SNP [dm6]	T	C	5.329e^-4	0.984	DOWNSTREAM CG10953 INTERGENIC
3L	19155936	3L_19155936_SNP [dm3] 3L_19162836_SNP [dm6]	T	G	5.336e^-4	0.984	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17105013	2R_17105013_SNP [dm3] 2R_21217508_SNP [dm6]	A	C	5.340e^-4	0.984	DOWNSTREAM ASPP INTRON CG15661
3L	13216666	3L_13216666_INS [dm3] 3L_13223566_INS [dm6]	T	TAATA	5.350e^-4	0.984	INTERGENIC
3L	13216682	3L_13216682_SNP [dm3] 3L_13223582_SNP [dm6]	G	T	5.350e^-4	0.984	INTERGENIC
3L	13216690	3L_13216690_SNP [dm3] 3L_13223590_SNP [dm6]	T	A	5.350e^-4	0.984	INTERGENIC
3L	13216691	3L_13216691_SNP [dm3] 3L_13223591_SNP [dm6]	T	A	5.350e^-4	0.984	INTERGENIC
3L	13216694	3L_13216694_SNP [dm3] 3L_13223594_SNP [dm6]	T	G	5.350e^-4	0.984	INTERGENIC
3R	7500776	3R_7500776_SNP [dm3] 3R_11675054_SNP [dm6]	G	T	5.354e^-4	0.984	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715
3R	7500896	3R_7500896_SNP [dm3] 3R_11675174_SNP [dm6]	A	G	5.354e^-4	0.984	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14494302	3R_14494302_SNP [dm3] 3R_18668580_SNP [dm6]	G	A	5.359e^-4	0.984	UPSTREAM CG7702 DOWNSTREAM CG31231 INTRON CG31229 EXON CR45028
3L	2726580	3L_2726580_SNP [dm3] 3L_2726580_SNP [dm6]	T	C	5.366e^-4	0.984	INTRON Mrtf
3L	14147383	3L_14147383_SNP [dm3] 3L_14154283_SNP [dm6]	G	A	5.383e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14147384	3L_14147384_SNP [dm3] 3L_14154284_SNP [dm6]	G	A	5.383e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11000608	3L_11000608_SNP [dm3] 3L_11007508_SNP [dm6]	C	T	5.385e^-4	0.984	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17964788	3R_17964788_SNP [dm3] 3R_22139066_SNP [dm6]	A	G	5.402e^-4	0.984	INTRON SKIP
2R	6917448	2R_6917448_SNP [dm3] 2R_11029943_SNP [dm6]	G	C	5.412e^-4	0.984	INTRON luna
3R	21978501	3R_21978501_SNP [dm3] 3R_26152779_SNP [dm6]	A	G	5.420e^-4	0.984	INTERGENIC
X	10216792	X_10216792_SNP [dm3] X_10322759_SNP [dm6]	T	A	5.420e^-4	0.984	INTRON alpha-Man-I
2R	16699782	2R_16699782_SNP [dm3] 2R_20812277_SNP [dm6]	A	C	5.430e^-4	0.984	INTERGENIC
3R	9011223	3R_9011223_DEL [dm3] 3R_13185501_DEL [dm6]	GT	G	5.446e^-4	0.984	DOWNSTREAM CG8508 INTERGENIC
2L	3335454	2L_3335454_SNP [dm3] 2L_3335454_SNP [dm6]	A	T	5.470e^-4	0.984	UTR_3_PRIME E23 DOWNSTREAM CG15408
2L	13918120	2L_13918120_SNP [dm3] 2L_13918120_SNP [dm6]	A	C	5.493e^-4	0.984	INTRON Ance-3
3R	26956016	3R_26956016_SNP [dm3] 3R_31130294_SNP [dm6]	T	C	5.512e^-4	0.984	SYNONYMOUS_CODING CG15556	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16564484	2L_16564484_SNP [dm3] 2L_16564484_SNP [dm6]	C	T	5.526e^-4	0.984	INTRON CG42389
X	5338051	X_5338051_SNP [dm3] X_5444018_SNP [dm6]	G	A	5.533e^-4	0.984	INTERGENIC
3R	13379634	3R_13379634_SNP [dm3] 3R_17553912_SNP [dm6]	C	T	5.534e^-4	0.984	INTERGENIC
3L	12818242	3L_12818242_SNP [dm3] 3L_12825142_SNP [dm6]	C	T	5.548e^-4	0.984	UTR_3_PRIME CG10960 DOWNSTREAM CG42588
2L	21862630	2L_21862630_SNP [dm3] 2L_21862630_SNP [dm6]	T	G	5.556e^-4	0.984	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	16857946	X_16857946_SNP [dm3] X_16963913_SNP [dm6]	A	T	5.557e^-4	0.984	INTRON CG9086
3R	13988227	3R_13988227_SNP [dm3] 3R_18162505_SNP [dm6]	C	A	5.586e^-4	0.984	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_HSA
X	4986687	X_4986687_SNP [dm3] X_5092654_SNP [dm6]	C	G	5.587e^-4	0.984	INTRON rg & 1 other
2L	9707138	2L_9707138_SNP [dm3] 2L_9707138_SNP [dm6]	T	A	5.589e^-4	0.984	INTRON pelo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17381823	2L_17381823_SNP [dm3] 2L_17381823_SNP [dm6]	T	G	5.596e^-4	0.984	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18745448	2R_18745448_SNP [dm3] 2R_22857925_SNP [dm6]	G	A	5.601e^-4	0.984	SYNONYMOUS_CODING inaD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14867338	X_14867338_INS [dm3] X_14973305_INS [dm6]	T	TGAA	5.608e^-4	0.984	INTRON eag
3R	8926228	3R_8926228_SNP [dm3] 3R_13100506_SNP [dm6]	C	T	5.616e^-4	0.984	INTRON timeout	TF binding site mE1_TFBS_HSA
2R	16216597	2R_16216597_SNP [dm3] 2R_20329092_SNP [dm6]	G	A	5.619e^-4	0.984	INTRON CG8929	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19061884	3R_19061884_SNP [dm3] 3R_23236162_SNP [dm6]	A	C	5.629e^-4	0.984	INTRON CG4467
2L	9833426	2L_9833426_SNP [dm3] 2L_9833426_SNP [dm6]	T	C	5.629e^-4	0.984	INTRON nAChRalpha6
3L	6965459	3L_6965459_INS [dm3] 3L_6972359_INS [dm6]	T	TATT	5.635e^-4	0.984	UTR_5_PRIME CG10063 DOWNSTREAM CG9953 & 1 other
3R	25282568	3R_25282568_SNP [dm3] 3R_29456846_SNP [dm6]	T	G	5.648e^-4	0.984	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	17284564	X_17284564_SNP [dm3] X_17390531_SNP [dm6]	C	A	5.648e^-4	0.984	INTERGENIC
3L	6966865	3L_6966865_SNP [dm3] 3L_6973765_SNP [dm6]	T	A	5.652e^-4	0.984	SYNONYMOUS_CODING Galphai	TF binding site mE1_TFBS_sens
3L	4082125	3L_4082125_SNP [dm3] 3L_4082125_SNP [dm6]	G	A	5.656e^-4	0.984	INTRON Gad1
3R	19633070	3R_19633070_SNP [dm3] 3R_23807348_SNP [dm6]	G	A	5.661e^-4	0.984	SYNONYMOUS_CODING CG33111 DOWNSTREAM eIF4G2 INTRON CG34355
2L	2148291	2L_2148291_SNP [dm3] 2L_2148291_SNP [dm6]	C	T	5.667e^-4	0.984	SYNONYMOUS_CODING CG7261	TF binding site mE1_TFBS_sens
2L	2148459	2L_2148459_SNP [dm3] 2L_2148459_SNP [dm6]	T	G	5.667e^-4	0.984	SYNONYMOUS_CODING CG7261	TF binding site mE1_TFBS_sens
X	16559875	X_16559875_SNP [dm3] X_16665842_SNP [dm6]	C	T	5.670e^-4	0.984	INTRON r	TF binding site BDTNP1_TFBS_da
X	11218298	X_11218298_SNP [dm3] X_11324265_SNP [dm6]	T	C	5.683e^-4	0.984	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4594539	2L_4594539_SNP [dm3] 2L_4594539_SNP [dm6]	G	T	5.688e^-4	0.984	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	512906	3R_512906_SNP [dm3] 3R_4687184_SNP [dm6]	C	T	5.722e^-4	0.984	INTRON CG43427	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10413595	3R_10413595_DEL [dm3] 3R_14587873_DEL [dm6]	CATTTGC	C	5.727e^-4	0.984	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16490360	2L_16490360_SNP [dm3] 2L_16490360_SNP [dm6]	C	A	5.729e^-4	0.984	DOWNSTREAM CG4580 INTRON CR44994
2R	955274	2R_955274_SNP [dm3] 2R_5067769_SNP [dm6]	C	T	5.741e^-4	0.984	INTRON TpnC41C
2R	18068289	2R_18068289_SNP [dm3] 2R_22180784_SNP [dm6]	G	A	5.742e^-4	0.984	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_prd
2R	18068320	2R_18068320_SNP [dm3] 2R_22180815_SNP [dm6]	T	C	5.742e^-4	0.984	INTRON CG11170 & 1 other
X	10857978	X_10857978_DEL [dm3] X_10963945_DEL [dm6]	AATA	A	5.749e^-4	0.984	UTR_3_PRIME Myo10A DOWNSTREAM C901
2L	5854689	2L_5854689_SNP [dm3] 2L_5854689_SNP [dm6]	T	C	5.756e^-4	0.984	INTRON TrissinR
3R	6643515	3R_6643515_SNP [dm3] 3R_10817793_SNP [dm6]	A	C	5.757e^-4	0.984	DOWNSTREAM CG4089 INTERGENIC
2L	15540907	2L_15540907_SNP [dm3] 2L_15540907_SNP [dm6]	T	A	5.761e^-4	0.984	INTERGENIC
3L	2202032	3L_2202032_SNP [dm3] 3L_2202032_SNP [dm6]	G	T	5.767e^-4	0.984	INTERGENIC
3R	22991361	3R_22991361_SNP [dm3] 3R_27165639_SNP [dm6]	C	T	5.767e^-4	0.984	UPSTREAM spn-D & 1 other DOWNSTREAM ppk31 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	2572386	3L_2572386_SNP [dm3] 3L_2572386_SNP [dm6]	C	T	5.768e^-4	0.984	INTRON msn
X	7657812	X_7657812_SNP [dm3] X_7763779_SNP [dm6]	A	C	5.771e^-4	0.984	INTERGENIC
3R	8926202	3R_8926202_SNP [dm3] 3R_13100480_SNP [dm6]	T	A	5.771e^-4	0.984	INTRON timeout	TF binding site mE1_TFBS_HSA
3R	6703737	3R_6703737_SNP [dm3] 3R_10878015_SNP [dm6]	G	A	5.773e^-4	0.984	NON_SYNONYMOUS_CODING Sodh-2 UPSTREAM CR45195 DOWNSTREAM CG14695	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6705019	3R_6705019_SNP [dm3] 3R_10879297_SNP [dm6]	T	C	5.773e^-4	0.984	UTR_5_PRIME CG14695 DOWNSTREAM Tpc1	TF binding site mE1_TFBS_HSA
3R	6705370	3R_6705370_SNP [dm3] 3R_10879648_SNP [dm6]	C	T	5.773e^-4	0.984	UTR_3_PRIME Tpc1 UPSTREAM CG14695	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12796597	2L_12796597_SNP [dm3] 2L_12796597_SNP [dm6]	C	T	5.792e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11809609	2L_11809609_SNP [dm3] 2L_11809609_SNP [dm6]	T	A	5.796e^-4	0.984	UPSTREAM crol DOWNSTREAM CycY INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6503553	3L_6503553_SNP [dm3] 3L_6510453_SNP [dm6]	A	T	5.804e^-4	0.984	INTRON sfl
3L	6503556	3L_6503556_SNP [dm3] 3L_6510456_SNP [dm6]	G	A	5.804e^-4	0.984	INTRON sfl
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	5.805e^-4	0.984	UPSTREAM CG5510 INTERGENIC
X	16842407	X_16842407_SNP [dm3] X_16948374_SNP [dm6]	G	C	5.805e^-4	0.984	NON_SYNONYMOUS_CODING CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1053250	2L_1053250_SNP [dm3] 2L_1053250_SNP [dm6]	A	C	5.834e^-4	0.984	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11727573	3L_11727573_SNP [dm3] 3L_11734473_SNP [dm6]	C	A	5.841e^-4	0.984	UTR_3_PRIME CG6024 DOWNSTREAM CG32087
3L	10400970	3L_10400970_SNP [dm3] 3L_10407870_SNP [dm6]	A	G	5.847e^-4	0.984	INTERGENIC
3R	11738647	3R_11738647_SNP [dm3] 3R_15912925_SNP [dm6]	A	T	5.872e^-4	0.984	NON_SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17042927	3R_17042927_SNP [dm3] 3R_21217205_SNP [dm6]	G	T	5.873e^-4	0.984	DOWNSTREAM CG5862 & 1 other EXON CR43975
3R	18932533	3R_18932533_SNP [dm3] 3R_23106811_SNP [dm6]	G	T	5.889e^-4	0.984	INTRON CG13830
X	6048541	X_6048541_SNP [dm3] X_6154508_SNP [dm6]	C	T	5.899e^-4	0.984	INTRON Ca-alpha1T
X	13322316	X_13322316_INS [dm3] X_13428283_INS [dm6]	T	TATGAAATATATCTTAAAGG...	5.904e^-4	0.984	INTERGENIC
2L	7342727	2L_7342727_SNP [dm3] 2L_7342727_SNP [dm6]	A	C	5.906e^-4	0.984	INTRON Wnt6	TF binding site mE1_TFBS_inv
2L	7342798	2L_7342798_SNP [dm3] 2L_7342798_SNP [dm6]	G	C	5.906e^-4	0.984	INTRON Wnt6	TF binding site mE1_TFBS_inv
2R	7271488	2R_7271488_SNP [dm3] 2R_11383983_SNP [dm6]	C	A	5.910e^-4	0.984	DOWNSTREAM sprt INTRON Sod3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Trl
3L	3567751	3L_3567751_SNP [dm3] 3L_3567751_SNP [dm6]	T	G	5.910e^-4	0.984	INTRON Eip63E
X	7071649	X_7071649_SNP [dm3] X_7177616_SNP [dm6]	G	T	5.929e^-4	0.984	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	5.929e^-4	0.984	DOWNSTREAM CG9173 INTRON Ptp61F
2L	15045631	2L_15045631_SNP [dm3] 2L_15045631_SNP [dm6]	A	G	5.931e^-4	0.984	INTRON ck
3R	20027359	3R_20027359_SNP [dm3] 3R_24201637_SNP [dm6]	C	T	5.940e^-4	0.984	UPSTREAM twin INTRON twin
2L	2699350	2L_2699350_SNP [dm3] 2L_2699350_SNP [dm6]	G	A	5.949e^-4	0.984	INTRON CG31690
3R	12576182	3R_12576182_SNP [dm3] 3R_16750460_SNP [dm6]	A	C	5.949e^-4	0.984	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	16064427	2R_16064427_SNP [dm3] 2R_20176922_SNP [dm6]	G	T	5.954e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14317139	3R_14317139_SNP [dm3] 3R_18491417_SNP [dm6]	T	C	5.954e^-4	0.984	INTRON fru	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12956000	X_12956000_SNP [dm3] X_13061967_SNP [dm6]	A	C	5.973e^-4	0.984	UPSTREAM mir-971 INTRON rad
X	16252785	X_16252785_SNP [dm3] X_16358752_SNP [dm6]	T	C	5.974e^-4	0.984	UPSTREAM Gpi1 & 1 other INTRON U2af50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18132408	3L_18132408_SNP [dm3] 3L_18139308_SNP [dm6]	G	A	5.978e^-4	0.984	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18143939	3L_18143939_SNP [dm3] 3L_18150839_SNP [dm6]	G	A	5.978e^-4	0.984	NON_SYNONYMOUS_CODING CG7330
X	2598179	X_2598179_SNP [dm3] X_2704146_SNP [dm6]	A	C	5.978e^-4	0.984	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	5927949	2L_5927949_DEL [dm3] 2L_5927949_DEL [dm6]	TGCATTTATATTTATTTAAA...	T	5.980e^-4	0.984	INTRON dsf
2L	5928038	2L_5928038_INS [dm3] 2L_5928038_INS [dm6]	C	CTC	5.980e^-4	0.984	INTRON dsf
2L	5928044	2L_5928044_SNP [dm3] 2L_5928044_SNP [dm6]	A	T	5.980e^-4	0.984	INTRON dsf
2R	5941188	2R_5941188_SNP [dm3] 2R_10053683_SNP [dm6]	T	A	6.000e^-4	0.984	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3R	22981580	3R_22981580_SNP [dm3] 3R_27155858_SNP [dm6]	C	T	6.005e^-4	0.984	SYNONYMOUS_CODING Men-b
3R	17779292	3R_17779292_SNP [dm3] 3R_21953570_SNP [dm6]	C	G	6.008e^-4	0.984	INTRON Eip93F
2L	21861881	2L_21861881_SNP [dm3] 2L_21861881_SNP [dm6]	G	T	6.009e^-4	0.984	INTRON CR44917
2R	5288482	2R_5288482_SNP [dm3] 2R_9400977_SNP [dm6]	G	A	6.011e^-4	0.984	UTR_3_PRIME wun UPSTREAM CG33774
X	10221044	X_10221044_SNP [dm3] X_10327011_SNP [dm6]	A	T	6.012e^-4	0.984	SPLICE_SITE_REGION CG2909 INTRON CG2909	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7539948	2L_7539948_SNP [dm3] 2L_7539948_SNP [dm6]	G	C	6.034e^-4	0.984	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21862336	2L_21862336_SNP [dm3] 2L_21862336_SNP [dm6]	G	T	6.046e^-4	0.984	INTRON CR44917
X	17366550	X_17366550_SNP [dm3] X_17472517_SNP [dm6]	A	G	6.050e^-4	0.984	INTRON CG43658
3L	20193950	3L_20193950_SNP [dm3] 3L_20200850_SNP [dm6]	G	T	6.059e^-4	0.984	SYNONYMOUS_CODING obst-F DOWNSTREAM CG42833	TF binding site mE1_TFBS_HSA
3L	20194001	3L_20194001_SNP [dm3] 3L_20200901_SNP [dm6]	G	A	6.059e^-4	0.984	SYNONYMOUS_CODING obst-F DOWNSTREAM CG42833	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14895898	3L_14895898_SNP [dm3] 3L_14902798_SNP [dm6]	A	G	6.074e^-4	0.984	INTERGENIC
3L	6016836	3L_6016836_SNP [dm3] 3L_6023736_SNP [dm6]	T	G	6.087e^-4	0.984	INTRON PVRAP
X	20399556	X_20399556_SNP [dm3] X_20528529_SNP [dm6]	T	A	6.090e^-4	0.984	DOWNSTREAM CG42579 INTERGENIC
X	18731225	X_18731225_SNP [dm3] X_18837192_SNP [dm6]	C	T	6.095e^-4	0.984	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10921923	3L_10921923_SNP [dm3] 3L_10928823_SNP [dm6]	A	G	6.114e^-4	0.984	INTERGENIC
3L	22161908	3L_22161908_INS [dm3] 3L_22168808_INS [dm6]	A	ATA	6.124e^-4	0.984	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5844759	2L_5844759_SNP [dm3] 2L_5844759_SNP [dm6]	A	T	6.126e^-4	0.984	INTRON TrissinR
3L	14896117	3L_14896117_SNP [dm3] 3L_14903017_SNP [dm6]	A	T	6.131e^-4	0.984	UPSTREAM DCX-EMAP INTERGENIC
2R	9172481	2R_9172481_SNP [dm3] 2R_13284976_SNP [dm6]	A	G	6.133e^-4	0.984	INTRON Dh31-R
X	15262101	X_15262101_DEL [dm3] X_15368068_DEL [dm6]	CCTCGGTCAGGCGCCCC...	C	6.134e^-4	0.984	INTRON acj6
2R	18422113	2R_18422113_SNP [dm3] 2R_22534608_SNP [dm6]	C	T	6.137e^-4	0.984	INTRON px
2R	9272992	2R_9272992_SNP [dm3] 2R_13385487_SNP [dm6]	A	C	6.144e^-4	0.984	INTERGENIC
2L	4902022	2L_4902022_SNP [dm3] 2L_4902022_SNP [dm6]	A	T	6.152e^-4	0.984	SPLICE_SITE_REGION CG3036 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12738216	3R_12738216_SNP [dm3] 3R_16912494_SNP [dm6]	T	C	6.168e^-4	0.984	INTRON iab-8
3L	20200121	3L_20200121_SNP [dm3] 3L_20207021_SNP [dm6]	T	A	6.172e^-4	0.984	UPSTREAM CG7290 & 1 other INTERGENIC
3R	27019010	3R_27019010_SNP [dm3] 3R_31193288_SNP [dm6]	C	T	6.173e^-4	0.984	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18505456	3R_18505456_SNP [dm3] 3R_22679734_SNP [dm6]	A	G	6.183e^-4	0.984	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18505539	3R_18505539_SNP [dm3] 3R_22679817_SNP [dm6]	C	G	6.183e^-4	0.984	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18505564	3R_18505564_SNP [dm3] 3R_22679842_SNP [dm6]	G	C	6.183e^-4	0.984	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18505888	3R_18505888_SNP [dm3] 3R_22680166_SNP [dm6]	G	C	6.183e^-4	0.984	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5011155	3L_5011155_SNP [dm3] 3L_5011155_SNP [dm6]	G	T	6.203e^-4	0.984	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5010748	3L_5010748_SNP [dm3] 3L_5010748_SNP [dm6]	T	A	6.204e^-4	0.984	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1572248	3L_1572248_SNP [dm3] 3L_1572248_SNP [dm6]	G	A	6.214e^-4	0.984	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25300186	3R_25300186_SNP [dm3] 3R_29474464_SNP [dm6]	A	T	6.220e^-4	0.984	INTRON Ptp99A
3R	13672694	3R_13672694_SNP [dm3] 3R_17846972_SNP [dm6]	T	A	6.223e^-4	0.984	INTRON tinc
2R	1763859	2R_1763859_SNP [dm3] 2R_5876354_SNP [dm6]	C	G	6.229e^-4	0.984	INTERGENIC
3L	7820490	3L_7820490_SNP [dm3] 3L_7827390_SNP [dm6]	T	C	6.235e^-4	0.984	INTRON Pdp1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.717e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.07111

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1511 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7287811	2L_7287811_SNP [dm3] 2L_7287811_SNP [dm6]	G	A	2.850e^-6	0.996	INTERGENIC
3L	4239785	3L_4239785_SNP [dm3] 3L_4239785_SNP [dm6]	T	C	2.898e^-6	0.996	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3220954	X_3220954_DEL [dm3] X_3326921_DEL [dm6]	CTC	C	5.091e^-6	0.996	INTRON CR44886 & 1 other
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	6.183e^-6	0.996	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	6.183e^-6	0.996	INTRON snama
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	6.183e^-6	0.996	INTRON snama
2R	19975316	2R_19975316_SNP [dm3] 2R_24087793_SNP [dm6]	T	G	6.183e^-6	0.996	NON_SYNONYMOUS_CODING snama
X	5262872	X_5262872_SNP [dm3] X_5368839_SNP [dm6]	G	A	6.253e^-6	0.996	INTRON SK
2L	11808502	2L_11808502_SNP [dm3] 2L_11808502_SNP [dm6]	A	T	6.510e^-6	0.996	UTR_5_PRIME crol INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
2L	14077454	2L_14077454_SNP [dm3] 2L_14077454_SNP [dm6]	C	T	6.620e^-6	0.996	INTRON nAChRalpha5
3L	4240014	3L_4240014_SNP [dm3] 3L_4240014_SNP [dm6]	T	A	6.922e^-6	0.996	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23875991	3R_23875991_SNP [dm3] 3R_28050269_SNP [dm6]	G	A	7.680e^-6	0.996	SYNONYMOUS_CODING CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14077445	2L_14077445_SNP [dm3] 2L_14077445_SNP [dm6]	T	C	7.912e^-6	0.996	INTRON nAChRalpha5
3L	2091710	3L_2091710_SNP [dm3] 3L_2091710_SNP [dm6]	C	A	9.291e^-6	0.996	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	584318	2L_584318_SNP [dm3] 2L_584318_SNP [dm6]	G	T	1.057e^-5	0.996	NON_SYNONYMOUS_CODING Gsc
X	20227240	X_20227240_SNP [dm3] X_20356213_SNP [dm6]	A	C	1.359e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20227254	X_20227254_SNP [dm3] X_20356227_SNP [dm6]	T	A	1.359e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2105623	3L_2105623_SNP [dm3] 3L_2105623_SNP [dm6]	A	G	1.424e^-5	0.996	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2113971	3L_2113971_SNP [dm3] 3L_2113971_SNP [dm6]	T	A	1.424e^-5	0.996	INTRON sls
3L	2108062	3L_2108062_SNP [dm3] 3L_2108062_SNP [dm6]	T	G	1.462e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
X	8757542	X_8757542_SNP [dm3] X_8863509_SNP [dm6]	T	A	1.485e^-5	0.996	UPSTREAM CG12075 INTRON CG12075
3L	16948107	3L_16948107_SNP [dm3] 3L_16955007_SNP [dm6]	G	T	1.563e^-5	0.996	START_GAINED Nc73EF UTR_5_PRIME Nc73EF UPSTREAM Nc73EF
3L	2108043	3L_2108043_SNP [dm3] 3L_2108043_SNP [dm6]	T	C	1.566e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
2R	17361230	2R_17361230_SNP [dm3] 2R_21473725_SNP [dm6]	G	A	1.615e^-5	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3158454	3R_3158454_SNP [dm3] 3R_7332732_SNP [dm6]	A	T	1.664e^-5	0.996	DOWNSTREAM CR44337 INTERGENIC
2R	8785170	2R_8785170_SNP [dm3] 2R_12897665_SNP [dm6]	A	G	1.683e^-5	0.996	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16839286	2R_16839286_SNP [dm3] 2R_20951781_SNP [dm6]	A	C	1.801e^-5	0.996	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	10203526	X_10203526_SNP [dm3] X_10309493_SNP [dm6]	A	T	1.814e^-5	0.996	UPSTREAM alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5921428	X_5921428_SNP [dm3] X_6027395_SNP [dm6]	G	C	1.884e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2108076	3L_2108076_INS [dm3] 3L_2108076_INS [dm6]	T	TATTATCT	1.924e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
3L	2108080	3L_2108080_SNP [dm3] 3L_2108080_SNP [dm6]	T	C	1.924e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
X	6616092	X_6616092_SNP [dm3] X_6722059_SNP [dm6]	G	A	2.072e^-5	0.996	SYNONYMOUS_CODING CG3168
3L	2108026	3L_2108026_INS [dm3] 3L_2108026_INS [dm6]	T	TTAATTAGG	2.103e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
3L	7271891	3L_7271891_SNP [dm3] 3L_7278791_SNP [dm6]	T	C	2.108e^-5	0.996	INTRON unc-13-4A
X	21316317	X_21316317_SNP [dm3] X_21445290_SNP [dm6]	G	A	2.148e^-5	0.996	INTRON CG42343
3L	2108050	3L_2108050_SNP [dm3] 3L_2108050_SNP [dm6]	A	T	2.209e^-5	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
3R	23867457	3R_23867457_SNP [dm3] 3R_28041735_SNP [dm6]	G	A	2.303e^-5	0.996	INTRON CG34362
X	21316200	X_21316200_SNP [dm3] X_21445173_SNP [dm6]	A	G	2.332e^-5	0.996	INTRON CG42343
3L	10281855	3L_10281855_SNP [dm3] 3L_10288755_SNP [dm6]	T	C	2.356e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17361185	2R_17361185_SNP [dm3] 2R_21473680_SNP [dm6]	A	T	2.487e^-5	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9232666	3L_9232666_SNP [dm3] 3L_9239566_SNP [dm6]	G	A	2.491e^-5	0.996	INTERGENIC
3R	23873667	3R_23873667_DEL [dm3] 3R_28047945_DEL [dm6]	AAAAG	A	2.500e^-5	0.996	INTRON CG34362
2R	18944567	2R_18944567_SNP [dm3] 2R_23057044_SNP [dm6]	A	G	2.576e^-5	0.996	INTRON CG44252
3L	10894831	3L_10894831_SNP [dm3] 3L_10901731_SNP [dm6]	G	T	2.697e^-5	0.996	INTERGENIC
2L	5071680	2L_5071680_SNP [dm3] 2L_5071680_SNP [dm6]	C	T	2.838e^-5	0.996	SYNONYMOUS_CODING RpL37A UPSTREAM CR45305 DOWNSTREAM qtc & 1 other	TF binding site BDTNP1_TFBS_dl
X	10735068	X_10735068_SNP [dm3] X_10841035_SNP [dm6]	T	G	2.898e^-5	0.996	INTRON sbr	TF binding site BDTNP1_TFBS_twi
3R	23874963	3R_23874963_SNP [dm3] 3R_28049241_SNP [dm6]	A	G	2.919e^-5	0.996	INTRON CG34362
2L	13278875	2L_13278875_SNP [dm3] 2L_13278875_SNP [dm6]	A	G	2.939e^-5	0.996	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14883274	2R_14883274_SNP [dm3] 2R_18995769_SNP [dm6]	T	G	3.248e^-5	0.996	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	13875976	2L_13875976_SNP [dm3] 2L_13875976_SNP [dm6]	G	A	3.251e^-5	0.996	INTRON CenG1A
3L	4435768	3L_4435768_SNP [dm3] 3L_4435768_SNP [dm6]	A	G	3.287e^-5	0.996	UTR_3_PRIME nAChRbeta1 UPSTREAM CG15021
X	20227210	X_20227210_SNP [dm3] X_20356183_SNP [dm6]	T	C	3.337e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11391043	2R_11391043_SNP [dm3] 2R_15503538_SNP [dm6]	A	G	3.393e^-5	0.996	SYNONYMOUS_CODING Ir52b UPSTREAM Ir52c
2R	16839256	2R_16839256_SNP [dm3] 2R_20951751_SNP [dm6]	G	A	3.409e^-5	0.996	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	17660128	3R_17660128_SNP [dm3] 3R_21834406_SNP [dm6]	A	T	3.836e^-5	0.996	DOWNSTREAM Gr93a INTERGENIC
3L	2108155	3L_2108155_SNP [dm3] 3L_2108155_SNP [dm6]	T	A	3.907e^-5	0.996	INTRON sls
X	19623484	X_19623484_SNP [dm3] X_19729451_SNP [dm6]	A	G	4.090e^-5	0.996	UTR_3_PRIME CG12531
X	19626008	X_19626008_SNP [dm3] X_19731975_SNP [dm6]	G	A	4.090e^-5	0.996	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5718979	3L_5718979_SNP [dm3] 3L_5725879_SNP [dm6]	T	G	4.162e^-5	0.996	INTRON sif
X	21316703	X_21316703_SNP [dm3] X_21445676_SNP [dm6]	T	A	4.271e^-5	0.996	INTRON CG42343
2R	17363627	2R_17363627_SNP [dm3] 2R_21476122_SNP [dm6]	T	A	4.393e^-5	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4007867	2L_4007867_SNP [dm3] 2L_4007867_SNP [dm6]	T	C	4.523e^-5	0.996	SYNONYMOUS_CODING CG43773 UPSTREAM CG43774
2R	10451779	2R_10451779_SNP [dm3] 2R_14564274_SNP [dm6]	A	T	4.561e^-5	0.996	INTRON ttv
3R	23871952	3R_23871952_SNP [dm3] 3R_28046230_SNP [dm6]	T	G	4.621e^-5	0.996	INTRON CG34362
3L	10371927	3L_10371927_SNP [dm3] 3L_10378827_SNP [dm6]	A	C	4.648e^-5	0.996	INTERGENIC
2R	2402449	2R_2402449_SNP [dm3] 2R_6514944_SNP [dm6]	G	T	4.694e^-5	0.996	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2323848	X_2323848_SNP [dm3] X_2429815_SNP [dm6]	A	T	4.696e^-5	0.996	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2479376	2R_2479376_SNP [dm3] 2R_6591871_SNP [dm6]	G	T	4.752e^-5	0.996	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14523233	3R_14523233_SNP [dm3] 3R_18697511_SNP [dm6]	A	C	4.830e^-5	0.996	INTERGENIC
3L	2108148	3L_2108148_SNP [dm3] 3L_2108148_SNP [dm6]	T	A	4.872e^-5	0.996	INTRON sls
3L	10757418	3L_10757418_SNP [dm3] 3L_10764318_SNP [dm6]	A	T	4.948e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2108161	3L_2108161_DEL [dm3] 3L_2108161_DEL [dm6]	GCCTAGATTTATATTAGGCT...	T	5.008e^-5	0.996	INTRON sls
2L	4007448	2L_4007448_SNP [dm3] 2L_4007448_SNP [dm6]	T	C	5.095e^-5	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2L	4007155	2L_4007155_SNP [dm3] 2L_4007155_SNP [dm6]	A	C	5.330e^-5	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
3L	10371900	3L_10371900_SNP [dm3] 3L_10378800_SNP [dm6]	G	C	5.336e^-5	0.996	INTERGENIC
3R	17011222	3R_17011222_SNP [dm3] 3R_21185500_SNP [dm6]	G	A	5.537e^-5	0.996	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15113140	X_15113140_SNP [dm3] X_15219107_SNP [dm6]	C	T	5.595e^-5	0.996	INTERGENIC
2L	9512037	2L_9512037_SNP [dm3] 2L_9512037_SNP [dm6]	T	G	5.698e^-5	0.996	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	17660127	3R_17660127_SNP [dm3] 3R_21834405_SNP [dm6]	G	T	5.699e^-5	0.996	DOWNSTREAM Gr93a INTERGENIC
2L	12235055	2L_12235055_SNP [dm3] 2L_12235055_SNP [dm6]	A	C	5.781e^-5	0.996	INTRON aret
2R	4934811	2R_4934811_SNP [dm3] 2R_9047306_SNP [dm6]	T	G	5.805e^-5	0.996	INTRON CG13743
2L	1282989	2L_1282989_SNP [dm3] 2L_1282989_SNP [dm6]	A	C	5.940e^-5	0.996	INTRON robo3
2L	4007164	2L_4007164_SNP [dm3] 2L_4007164_SNP [dm6]	A	T	5.970e^-5	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
X	16724328	X_16724328_SNP [dm3] X_16830295_SNP [dm6]	G	T	6.030e^-5	0.996	INTRON CG13004
2L	19342732	2L_19342732_SNP [dm3] 2L_19342732_SNP [dm6]	G	T	6.041e^-5	0.996	INTRON dnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2108193	3L_2108193_SNP [dm3] 3L_2108193_SNP [dm6]	G	T	6.152e^-5	0.996	INTRON sls
3R	16141200	3R_16141200_SNP [dm3] 3R_20315478_SNP [dm6]	A	G	6.203e^-5	0.996	INTRON CG42668
2L	15955008	2L_15955008_SNP [dm3] 2L_15955008_SNP [dm6]	T	C	6.239e^-5	0.996	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
2R	9233718	2R_9233718_SNP [dm3] 2R_13346213_SNP [dm6]	G	A	6.250e^-5	0.996	INTRON CR44206
2L	4007047	2L_4007047_SNP [dm3] 2L_4007047_SNP [dm6]	G	A	6.286e^-5	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
3R	19189402	3R_19189402_SNP [dm3] 3R_23363680_SNP [dm6]	C	T	6.301e^-5	0.996	UPSTREAM CG4408 INTERGENIC
2R	11391296	2R_11391296_SNP [dm3] 2R_15503791_SNP [dm6]	A	G	6.433e^-5	0.996	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2R	5536162	2R_5536162_SNP [dm3] 2R_9648657_SNP [dm6]	T	A	6.452e^-5	0.996	INTRON Mmp2
X	19166705	X_19166705_SNP [dm3] X_19272672_SNP [dm6]	T	C	6.644e^-5	0.996	UTR_3_PRIME Vav DOWNSTREAM Vav & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	15422201	X_15422201_SNP [dm3] X_15528168_SNP [dm6]	G	A	6.788e^-5	0.996	INTRON Ac13E
2R	17387854	2R_17387854_SNP [dm3] 2R_21500349_SNP [dm6]	A	G	6.809e^-5	0.996	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12542893	2R_12542893_SNP [dm3] 2R_16655388_SNP [dm6]	T	G	6.822e^-5	0.996	UTR_3_PRIME Picot UPSTREAM Nach
2L	10251159	2L_10251159_SNP [dm3] 2L_10251159_SNP [dm6]	T	G	6.839e^-5	0.996	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5921412	X_5921412_SNP [dm3] X_6027379_SNP [dm6]	C	A	6.871e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5921414	X_5921414_SNP [dm3] X_6027381_SNP [dm6]	T	C	6.871e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14120310	2L_14120310_SNP [dm3] 2L_14120310_SNP [dm6]	A	T	6.910e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14120311	2L_14120311_SNP [dm3] 2L_14120311_SNP [dm6]	A	C	6.910e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10281837	3L_10281837_SNP [dm3] 3L_10288737_SNP [dm6]	A	C	7.126e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5071659	2L_5071659_SNP [dm3] 2L_5071659_SNP [dm6]	A	G	7.260e^-5	0.996	SYNONYMOUS_CODING RpL37A UPSTREAM CR45305 DOWNSTREAM qtc & 1 other	TF binding site BDTNP1_TFBS_dl
3R	24734428	3R_24734428_SNP [dm3] 3R_28908706_SNP [dm6]	T	C	7.280e^-5	0.996	NON_SYNONYMOUS_CODING Doa UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16948043	3L_16948043_INS [dm3] 3L_16954943_INS [dm6]	T	TTAGTCA	7.286e^-5	0.996	UTR_5_PRIME Nc73EF UPSTREAM Nc73EF
2L	21131784	2L_21131784_SNP [dm3] 2L_21131784_SNP [dm6]	A	G	7.403e^-5	0.996	UTR_3_PRIME Nhe2 INTRON Nhe2
3R	17011224	3R_17011224_DEL [dm3] 3R_21185502_DEL [dm6]	ATTTA	A	7.435e^-5	0.996	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19208853	2L_19208853_SNP [dm3] 2L_19208853_SNP [dm6]	C	T	7.467e^-5	0.996	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19213980	2L_19213980_SNP [dm3] 2L_19213980_SNP [dm6]	C	T	7.467e^-5	0.996	INTERGENIC	TF binding site mE1_TFBS_sens
2R	2403849	2R_2403849_SNP [dm3] 2R_6516344_SNP [dm6]	G	C	7.590e^-5	0.996	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7485118	3L_7485118_SNP [dm3] 3L_7492018_SNP [dm6]	T	A	7.640e^-5	0.996	NON_SYNONYMOUS_CODING Cyp316a1 SPLICE_SITE_REGION Cyp316a1
X	5921424	X_5921424_SNP [dm3] X_6027391_SNP [dm6]	G	A	7.722e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10251177	2L_10251177_SNP [dm3] 2L_10251177_SNP [dm6]	G	C	7.953e^-5	0.996	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18202737	3R_18202737_SNP [dm3] 3R_22377015_SNP [dm6]	A	T	7.978e^-5	0.996	SYNONYMOUS_CODING CG18596	TF binding site mE1_TFBS_sens
2L	13912611	2L_13912611_SNP [dm3] 2L_13912611_SNP [dm6]	G	A	8.006e^-5	0.996	UTR_3_PRIME Acyp DOWNSTREAM Ance-2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21316716	X_21316716_SNP [dm3] X_21445689_SNP [dm6]	A	C	8.134e^-5	0.996	INTRON CG42343
3L	12191061	3L_12191061_SNP [dm3] 3L_12197961_SNP [dm6]	A	T	8.161e^-5	0.996	NON_SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
2R	10954513	2R_10954513_DEL [dm3] 2R_15067008_DEL [dm6]	TA	T	8.218e^-5	0.996	INTERGENIC
3L	2152189	3L_2152189_SNP [dm3] 3L_2152189_SNP [dm6]	T	C	8.463e^-5	0.996	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	23504825	3R_23504825_INS [dm3] 3R_27679103_INS [dm6]	A	AA	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504832	3R_23504832_SNP [dm3] 3R_27679110_SNP [dm6]	A	G	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504834	3R_23504834_SNP [dm3] 3R_27679112_SNP [dm6]	A	T	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504835	3R_23504835_INS [dm3] 3R_27679113_INS [dm6]	T	TG	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504837	3R_23504837_INS [dm3] 3R_27679115_INS [dm6]	A	ACGC	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504840	3R_23504840_SNP [dm3] 3R_27679118_SNP [dm6]	A	G	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23504843	3R_23504843_INS [dm3] 3R_27679121_INS [dm6]	A	ATA	8.463e^-5	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11065670	2L_11065670_SNP [dm3] 2L_11065670_SNP [dm6]	T	G	8.511e^-5	0.996	INTRON Samuel	TF binding site BDTNP1_TFBS_Med
2L	19214627	2L_19214627_SNP [dm3] 2L_19214627_SNP [dm6]	C	T	8.677e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	755305	2L_755305_SNP [dm3] 2L_755305_SNP [dm6]	C	A	8.753e^-5	0.996	INTRON GABA-B-R3
3R	24733940	3R_24733940_SNP [dm3] 3R_28908218_SNP [dm6]	T	C	8.804e^-5	0.996	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12191078	3L_12191078_SNP [dm3] 3L_12197978_SNP [dm6]	C	A	8.822e^-5	0.996	SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
2L	10169367	2L_10169367_SNP [dm3] 2L_10169367_SNP [dm6]	T	C	8.886e^-5	0.996	INTRON CG44153
X	17562282	X_17562282_SNP [dm3] X_17668249_SNP [dm6]	C	T	8.909e^-5	0.996	DOWNSTREAM CG12990 INTRON beta-Spec
X	17562288	X_17562288_SNP [dm3] X_17668255_SNP [dm6]	G	A	8.909e^-5	0.996	DOWNSTREAM CG12990 INTRON beta-Spec
2L	15278704	2L_15278704_SNP [dm3] 2L_15278704_SNP [dm6]	T	C	8.914e^-5	0.996	INTRON CR43682
2R	7260824	2R_7260824_DEL [dm3] 2R_11373319_DEL [dm6]	TC	T	8.964e^-5	0.996	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14588427	2R_14588427_SNP [dm3] 2R_18700922_SNP [dm6]	T	C	9.348e^-5	0.996	SYNONYMOUS_CODING Sik3	TF binding site mE1_TFBS_chinmo
2R	14588474	2R_14588474_SNP [dm3] 2R_18700969_SNP [dm6]	A	G	9.348e^-5	0.996	INTRON Sik3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5344893	X_5344893_SNP [dm3] X_5450860_SNP [dm6]	A	T	9.533e^-5	0.996	INTRON SPR
3L	12191065	3L_12191065_SNP [dm3] 3L_12197965_SNP [dm6]	G	T	9.533e^-5	0.996	NON_SYNONYMOUS_CODING CG11529	TF binding site mE1_TFBS_cad
3L	9972083	3L_9972083_SNP [dm3] 3L_9978983_SNP [dm6]	C	A	9.649e^-5	0.996	INTRON dpr6
3L	7490450	3L_7490450_SNP [dm3] 3L_7497350_SNP [dm6]	C	T	9.686e^-5	0.996	UTR_3_PRIME CG8539
3L	7490502	3L_7490502_SNP [dm3] 3L_7497402_SNP [dm6]	A	G	9.686e^-5	0.996	SYNONYMOUS_CODING CG8539
2L	19212770	2L_19212770_SNP [dm3] 2L_19212770_SNP [dm6]	C	A	9.700e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA
2R	6853963	2R_6853963_SNP [dm3] 2R_10966458_SNP [dm6]	T	G	1.005e^-4	0.996	INTERGENIC
3R	23504841	3R_23504841_SNP [dm3] 3R_27679119_SNP [dm6]	T	C	1.016e^-4	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4246799	2R_4246799_SNP [dm3] 2R_8359294_SNP [dm6]	G	T	1.019e^-4	0.996	NON_SYNONYMOUS_CODING CG11635 DOWNSTREAM spaw & 1 other INTRON pdm3	TF binding site BDTNP1_TFBS_twi
2L	9879184	2L_9879184_SNP [dm3] 2L_9879184_SNP [dm6]	T	C	1.025e^-4	0.996	INTRON nAChRalpha6
2R	18750146	2R_18750146_DEL [dm3] 2R_22862623_DEL [dm6]	TACTTGATATAT...	T	1.026e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18750180	2R_18750180_SNP [dm3] 2R_22862657_SNP [dm6]	T	C	1.026e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17273330	2R_17273330_SNP [dm3] 2R_21385825_SNP [dm6]	G	T	1.037e^-4	0.996	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl
2R	17273344	2R_17273344_SNP [dm3] 2R_21385839_SNP [dm6]	C	A	1.037e^-4	0.996	UPSTREAM Acox57D-p INTRON EfSec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21075747	2L_21075747_SNP [dm3] 2L_21075747_SNP [dm6]	A	C	1.047e^-4	0.996	INTRON tadr
2L	19215148	2L_19215148_SNP [dm3] 2L_19215148_SNP [dm6]	C	T	1.055e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10371968	3L_10371968_SNP [dm3] 3L_10378868_SNP [dm6]	A	G	1.069e^-4	0.996	INTERGENIC
3L	16906047	3L_16906047_SNP [dm3] 3L_16912947_SNP [dm6]	T	C	1.069e^-4	0.996	INTRON Lmpt
2R	7260842	2R_7260842_SNP [dm3] 2R_11373337_SNP [dm6]	A	T	1.076e^-4	0.996	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12283040	2L_12283040_SNP [dm3] 2L_12283040_SNP [dm6]	G	A	1.087e^-4	0.996	INTRON aret
2L	12283065	2L_12283065_SNP [dm3] 2L_12283065_SNP [dm6]	G	A	1.087e^-4	0.996	INTRON aret
3L	2152217	3L_2152217_SNP [dm3] 3L_2152217_SNP [dm6]	T	A	1.111e^-4	0.996	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10371880	3L_10371880_SNP [dm3] 3L_10378780_SNP [dm6]	T	A	1.115e^-4	0.996	INTERGENIC
3L	10371882	3L_10371882_SNP [dm3] 3L_10378782_SNP [dm6]	A	T	1.115e^-4	0.996	INTERGENIC
2L	19215892	2L_19215892_SNP [dm3] 2L_19215892_SNP [dm6]	A	T	1.125e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13595325	2L_13595325_SNP [dm3] 2L_13595325_SNP [dm6]	T	G	1.126e^-4	0.996	DOWNSTREAM CG9254 INTRON kuz
2L	14347261	2L_14347261_SNP [dm3] 2L_14347261_SNP [dm6]	C	T	1.147e^-4	0.996	UTR_3_PRIME mTTF UPSTREAM Send2
2L	4008074	2L_4008074_SNP [dm3] 2L_4008074_SNP [dm6]	T	C	1.150e^-4	0.996	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	11808508	2L_11808508_INS [dm3] 2L_11808508_INS [dm6]	A	AAGAACAGA	1.155e^-4	0.996	UTR_5_PRIME crol INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
2L	4008031	2L_4008031_SNP [dm3] 2L_4008031_SNP [dm6]	A	T	1.166e^-4	0.996	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2R	11476595	2R_11476595_SNP [dm3] 2R_15589090_SNP [dm6]	C	T	1.169e^-4	0.996	INTERGENIC
2R	11476596	2R_11476596_SNP [dm3] 2R_15589091_SNP [dm6]	C	G	1.169e^-4	0.996	INTERGENIC
2R	12645541	2R_12645541_SNP [dm3] 2R_16758036_SNP [dm6]	C	A	1.169e^-4	0.996	SYNONYMOUS_CODING unc-104
2R	16590099	2R_16590099_SNP [dm3] 2R_20702594_SNP [dm6]	T	A	1.169e^-4	0.996	INTRON dpr
X	4108905	X_4108905_DEL [dm3] X_4214872_DEL [dm6]	GAATAGTG	G	1.174e^-4	0.996	INTERGENIC
2L	19222830	2L_19222830_SNP [dm3] 2L_19222830_SNP [dm6]	G	T	1.189e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7318042	2L_7318042_SNP [dm3] 2L_7318042_SNP [dm6]	A	T	1.198e^-4	0.996	INTERGENIC
2R	8528799	2R_8528799_SNP [dm3] 2R_12641294_SNP [dm6]	C	A	1.206e^-4	0.996	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1237428	2L_1237428_SNP [dm3] 2L_1237428_SNP [dm6]	C	T	1.209e^-4	0.996	INTERGENIC
2L	4007508	2L_4007508_SNP [dm3] 2L_4007508_SNP [dm6]	C	T	1.214e^-4	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2R	16772150	2R_16772150_SNP [dm3] 2R_20884645_SNP [dm6]	A	G	1.222e^-4	0.996	SYNONYMOUS_CODING otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14524405	3R_14524405_SNP [dm3] 3R_18698683_SNP [dm6]	T	C	1.227e^-4	0.996	INTERGENIC
3R	26553731	3R_26553731_SNP [dm3] 3R_30728009_SNP [dm6]	T	A	1.257e^-4	0.996	UTR_3_PRIME CG1340 DOWNSTREAM CG1340	TF binding site mE1_TFBS_chinmo
3L	2096919	3L_2096919_SNP [dm3] 3L_2096919_SNP [dm6]	C	T	1.276e^-4	0.996	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2L	3627361	2L_3627361_SNP [dm3] 2L_3627361_SNP [dm6]	C	T	1.289e^-4	0.996	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
3R	3161915	3R_3161915_SNP [dm3] 3R_7336193_SNP [dm6]	A	G	1.295e^-4	0.996	INTERGENIC
2R	17363491	2R_17363491_SNP [dm3] 2R_21475986_SNP [dm6]	T	A	1.323e^-4	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17363567	2R_17363567_SNP [dm3] 2R_21476062_SNP [dm6]	C	T	1.323e^-4	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4007424	2L_4007424_SNP [dm3] 2L_4007424_SNP [dm6]	A	T	1.324e^-4	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2L	20938072	2L_20938072_SNP [dm3] 2L_20938072_SNP [dm6]	A	T	1.329e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5262886	X_5262886_DEL [dm3] X_5368853_DEL [dm6]	GG	G	1.337e^-4	0.996	INTRON SK
2L	3011630	2L_3011630_SNP [dm3] 2L_3011630_SNP [dm6]	T	G	1.337e^-4	0.996	INTRON CG17265
2R	8828568	2R_8828568_SNP [dm3] 2R_12941063_SNP [dm6]	A	T	1.340e^-4	0.996	SYNONYMOUS_CODING Mdr49 DOWNSTREAM Sans	TF binding site mE1_TFBS_chinmo
3L	15424019	3L_15424019_SNP [dm3] 3L_15430919_SNP [dm6]	G	A	1.343e^-4	0.996	INTERGENIC
2L	19218809	2L_19218809_SNP [dm3] 2L_19218809_SNP [dm6]	G	T	1.368e^-4	0.996	DOWNSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18984009	X_18984009_SNP [dm3] X_19089976_SNP [dm6]	C	A	1.377e^-4	0.996	INTERGENIC
3L	1582578	3L_1582578_SNP [dm3] 3L_1582578_SNP [dm6]	T	C	1.389e^-4	0.996	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	14120243	2L_14120243_SNP [dm3] 2L_14120243_SNP [dm6]	T	C	1.393e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14120244	2L_14120244_SNP [dm3] 2L_14120244_SNP [dm6]	T	A	1.393e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19211658	2L_19211658_SNP [dm3] 2L_19211658_SNP [dm6]	A	G	1.401e^-4	0.996	INTERGENIC
2R	10451749	2R_10451749_SNP [dm3] 2R_14564244_SNP [dm6]	A	G	1.404e^-4	0.996	INTRON ttv
3L	8586249	3L_8586249_SNP [dm3] 3L_8593149_SNP [dm6]	C	A	1.423e^-4	0.996	INTRON CG43078	TF binding site mE1_TFBS_cad
3R	16954275	3R_16954275_SNP [dm3] 3R_21128553_SNP [dm6]	G	T	1.444e^-4	0.996	NON_SYNONYMOUS_CODING CG5793 SPLICE_SITE_REGION CG5793 DOWNSTREAM Obp93a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10712249	3L_10712249_SNP [dm3] 3L_10719149_SNP [dm6]	A	C	1.459e^-4	0.996	INTERGENIC
3R	10677830	3R_10677830_SNP [dm3] 3R_14852108_SNP [dm6]	G	C	1.462e^-4	0.996	INTRON btsz	TF binding site BDTNP1_TFBS_prd
2R	13930406	2R_13930406_SNP [dm3] 2R_18042901_SNP [dm6]	T	G	1.488e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
3L	7490433	3L_7490433_SNP [dm3] 3L_7497333_SNP [dm6]	A	T	1.489e^-4	0.996	UTR_3_PRIME CG8539
2R	8921642	2R_8921642_SNP [dm3] 2R_13034137_SNP [dm6]	A	G	1.495e^-4	0.996	INTERGENIC
2L	17039962	2L_17039962_SNP [dm3] 2L_17039962_SNP [dm6]	C	G	1.508e^-4	0.996	INTERGENIC
X	5569524	X_5569524_SNP [dm3] X_5675491_SNP [dm6]	G	T	1.511e^-4	0.996	SPLICE_SITE_REGION Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	443127	X_443127_SNP [dm3] X_549094_SNP [dm6]	T	C	1.516e^-4	0.996	INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	5536370	2R_5536370_SNP [dm3] 2R_9648865_SNP [dm6]	G	T	1.525e^-4	0.996	INTRON Mmp2
3L	18591638	3L_18591638_DEL [dm3] 3L_18598538_DEL [dm6]	TAATGTTAACGT...	T	1.530e^-4	0.996	DOWNSTREAM CR45390 INTERGENIC
2R	16028629	2R_16028629_SNP [dm3] 2R_20141124_SNP [dm6]	A	T	1.537e^-4	0.996	INTERGENIC
2R	10954511	2R_10954511_SNP [dm3] 2R_15067006_SNP [dm6]	G	A	1.537e^-4	0.996	INTERGENIC
2L	14120287	2L_14120287_SNP [dm3] 2L_14120287_SNP [dm6]	A	T	1.541e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8785172	2R_8785172_SNP [dm3] 2R_12897667_SNP [dm6]	T	G	1.545e^-4	0.996	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26776948	3R_26776948_SNP [dm3] 3R_30951226_SNP [dm6]	G	T	1.547e^-4	0.996	INTERGENIC
2L	11511540	2L_11511540_SNP [dm3] 2L_11511540_SNP [dm6]	G	A	1.568e^-4	0.996	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_cad
X	15544709	X_15544709_SNP [dm3] X_15650676_SNP [dm6]	C	A	1.577e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18750136	2R_18750136_SNP [dm3] 2R_22862613_SNP [dm6]	C	G	1.583e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10776291	2L_10776291_SNP [dm3] 2L_10776291_SNP [dm6]	G	A	1.584e^-4	0.996	INTRON CG31869
2R	16966482	2R_16966482_SNP [dm3] 2R_21078977_SNP [dm6]	A	T	1.594e^-4	0.996	INTRON Treh
3L	18551918	3L_18551918_SNP [dm3] 3L_18558818_SNP [dm6]	G	A	1.601e^-4	0.996	INTERGENIC
3R	23886130	3R_23886130_SNP [dm3] 3R_28060408_SNP [dm6]	C	A	1.606e^-4	0.996	INTRON CG34362
3R	23886152	3R_23886152_SNP [dm3] 3R_28060430_SNP [dm6]	C	G	1.606e^-4	0.996	INTRON CG34362
X	10798311	X_10798311_DEL [dm3] X_10904278_DEL [dm6]	ACATA	A	1.607e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1415216	2L_1415216_SNP [dm3] 2L_1415216_SNP [dm6]	T	C	1.608e^-4	0.996	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5921577	X_5921577_SNP [dm3] X_6027544_SNP [dm6]	A	G	1.624e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19208261	2L_19208261_SNP [dm3] 2L_19208261_SNP [dm6]	C	G	1.639e^-4	0.996	UTR_3_PRIME drl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4139545	2R_4139545_SNP [dm3] 2R_8252040_SNP [dm6]	G	T	1.645e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7260886	2R_7260886_SNP [dm3] 2R_11373381_SNP [dm6]	G	T	1.653e^-4	0.996	UPSTREAM CG13203 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17388996	2L_17388996_SNP [dm3] 2L_17388996_SNP [dm6]	A	G	1.659e^-4	0.996	UPSTREAM CLIP-190 INTRON CLIP-190
2L	10777410	2L_10777410_SNP [dm3] 2L_10777410_SNP [dm6]	A	C	1.674e^-4	0.996	INTRON CG31869
2R	10266856	2R_10266856_SNP [dm3] 2R_14379351_SNP [dm6]	T	A	1.676e^-4	0.996	INTRON Dh44-R1
X	16501446	X_16501446_DEL [dm3] X_16607413_DEL [dm6]	CTGTAGTTGAATGC...	C	1.688e^-4	0.996	INTRON Nup153	TF binding site BDTNP1_TFBS_dl
3L	9953394	3L_9953394_SNP [dm3] 3L_9960294_SNP [dm6]	C	T	1.689e^-4	0.996	INTRON CG34356
X	5921418	X_5921418_SNP [dm3] X_6027385_SNP [dm6]	G	T	1.709e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19155048	2R_19155048_SNP [dm3] 2R_23267525_SNP [dm6]	A	G	1.726e^-4	0.996	INTERGENIC
3L	2106843	3L_2106843_SNP [dm3] 3L_2106843_SNP [dm6]	A	C	1.727e^-4	0.996	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17968101	2R_17968101_SNP [dm3] 2R_22080596_SNP [dm6]	G	A	1.731e^-4	0.996	UPSTREAM Synj INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10711607	3L_10711607_SNP [dm3] 3L_10718507_SNP [dm6]	G	A	1.732e^-4	0.996	INTERGENIC
2L	7005786	2L_7005786_SNP [dm3] 2L_7005786_SNP [dm6]	G	A	1.747e^-4	0.996	INTRON uif	TF binding site BDTNP1_TFBS_hb
3L	2108127	3L_2108127_DEL [dm3] 3L_2108127_DEL [dm6]	CCTGTTTACTTC...	C	1.761e^-4	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
2L	14304325	2L_14304325_SNP [dm3] 2L_14304325_SNP [dm6]	A	T	1.782e^-4	0.996	INTRON wb	TF binding site mE1_TFBS_inv
2L	19207932	2L_19207932_SNP [dm3] 2L_19207932_SNP [dm6]	A	G	1.801e^-4	0.996	UTR_3_PRIME drl
3L	2092866	3L_2092866_SNP [dm3] 3L_2092866_SNP [dm6]	G	A	1.803e^-4	0.996	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2153190	2L_2153190_SNP [dm3] 2L_2153190_SNP [dm6]	T	G	1.818e^-4	0.996	INTRON AIF	TF binding site mE1_TFBS_cad
2L	14120258	2L_14120258_SNP [dm3] 2L_14120258_SNP [dm6]	A	T	1.834e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19550959	2R_19550959_SNP [dm3] 2R_23663436_SNP [dm6]	G	A	1.852e^-4	0.996	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12693439	2R_12693439_SNP [dm3] 2R_16805934_SNP [dm6]	A	C	1.861e^-4	0.996	INTERGENIC
3R	14931745	3R_14931745_SNP [dm3] 3R_19106023_SNP [dm6]	G	T	1.862e^-4	0.996	INTRON CG6040
X	21315322	X_21315322_SNP [dm3] X_21444295_SNP [dm6]	T	C	1.868e^-4	0.996	INTRON CG42343
X	21315487	X_21315487_SNP [dm3] X_21444460_SNP [dm6]	C	A	1.868e^-4	0.996	INTRON CG42343
X	16747073	X_16747073_SNP [dm3] X_16853040_SNP [dm6]	T	C	1.913e^-4	0.996	INTRON CG13003
2L	13875982	2L_13875982_SNP [dm3] 2L_13875982_SNP [dm6]	C	T	1.914e^-4	0.996	INTRON CenG1A
3L	6073842	3L_6073842_SNP [dm3] 3L_6080742_SNP [dm6]	C	T	1.918e^-4	0.996	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6973178	3L_6973178_SNP [dm3] 3L_6980078_SNP [dm6]	C	T	1.934e^-4	0.996	UPSTREAM Galphai DOWNSTREAM CR32385 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20393636	2L_20393636_SNP [dm3] 2L_20393636_SNP [dm6]	C	A	1.936e^-4	0.996	INTRON CG10947
X	18212096	X_18212096_DEL [dm3] X_18318063_DEL [dm6]	TT	T	1.957e^-4	0.996	INTRON CG6023
2L	1172267	2L_1172267_SNP [dm3] 2L_1172267_SNP [dm6]	A	T	1.964e^-4	0.996	NON_SYNONYMOUS_CODING CG5118 UPSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18948611	3L_18948611_SNP [dm3] 3L_18955511_SNP [dm6]	C	A	1.967e^-4	0.996	DOWNSTREAM CG6836 INTERGENIC
3R	19148421	3R_19148421_SNP [dm3] 3R_23322699_SNP [dm6]	C	T	1.967e^-4	0.996	INTRON pnt
2L	13280579	2L_13280579_SNP [dm3] 2L_13280579_SNP [dm6]	G	C	1.968e^-4	0.996	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9709168	2L_9709168_SNP [dm3] 2L_9709168_SNP [dm6]	A	G	1.976e^-4	0.996	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13250504	2L_13250504_SNP [dm3] 2L_13250504_SNP [dm6]	T	C	1.984e^-4	0.996	DOWNSTREAM CG16820 INTERGENIC
3R	10881090	3R_10881090_SNP [dm3] 3R_15055368_SNP [dm6]	T	A	1.987e^-4	0.996	UTR_3_PRIME dpr9
2R	19353243	2R_19353243_INS [dm3] 2R_23465720_INS [dm6]	T	TGTGTGTGTGTGTGT...	1.991e^-4	0.996	INTRON CG43795
2L	15955040	2L_15955040_SNP [dm3] 2L_15955040_SNP [dm6]	A	G	2.001e^-4	0.996	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
2L	19216824	2L_19216824_SNP [dm3] 2L_19216824_SNP [dm6]	T	A	2.011e^-4	0.996	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	10371946	3L_10371946_SNP [dm3] 3L_10378846_SNP [dm6]	G	C	2.014e^-4	0.996	INTERGENIC
2L	19211445	2L_19211445_DEL [dm3] 2L_19211445_DEL [dm6]	TC	T	2.019e^-4	0.996	INTERGENIC
3R	23504812	3R_23504812_SNP [dm3] 3R_27679090_SNP [dm6]	A	T	2.025e^-4	0.996	UPSTREAM CG12883 DOWNSTREAM CG5590 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24293656	3R_24293656_SNP [dm3] 3R_28467934_SNP [dm6]	G	C	2.026e^-4	0.996	INTRON beat-VI
2L	19191435	2L_19191435_DEL [dm3] 2L_19191435_DEL [dm6]	AG	A	2.043e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16677151	2R_16677151_SNP [dm3] 2R_20789646_SNP [dm6]	T	C	2.044e^-4	0.996	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2L	19191293	2L_19191293_SNP [dm3] 2L_19191293_SNP [dm6]	T	C	2.051e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2078313	3L_2078313_SNP [dm3] 3L_2078313_SNP [dm6]	A	T	2.056e^-4	0.996	INTRON sls
X	11846964	X_11846964_SNP [dm3] X_11952931_SNP [dm6]	T	G	2.062e^-4	0.996	INTRON cac	TF binding site mE1_TFBS_HSA
2L	14672120	2L_14672120_SNP [dm3] 2L_14672120_SNP [dm6]	A	G	2.068e^-4	0.996	INTRON osp
3L	7490335	3L_7490335_SNP [dm3] 3L_7497235_SNP [dm6]	T	G	2.072e^-4	0.996	UTR_3_PRIME CG8539 DOWNSTREAM CG8539
3L	7490346	3L_7490346_DEL [dm3] 3L_7497246_DEL [dm6]	AAA	A	2.072e^-4	0.996	UTR_3_PRIME CG8539 DOWNSTREAM CG8539
3L	7490355	3L_7490355_SNP [dm3] 3L_7497255_SNP [dm6]	G	A	2.072e^-4	0.996	UTR_3_PRIME CG8539 DOWNSTREAM CG8539
X	9292288	X_9292288_SNP [dm3] X_9398255_SNP [dm6]	G	T	2.083e^-4	0.996	INTRON mgl
2L	10934490	2L_10934490_SNP [dm3] 2L_10934490_SNP [dm6]	T	A	2.085e^-4	0.996	INTRON dpr2
3L	2108112	3L_2108112_SNP [dm3] 3L_2108112_SNP [dm6]	T	C	2.102e^-4	0.996	INTRON sls	TF binding site mE1_TFBS_Trl
2L	19191405	2L_19191405_SNP [dm3] 2L_19191405_SNP [dm6]	C	G	2.111e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18536634	2R_18536634_SNP [dm3] 2R_22649129_SNP [dm6]	T	C	2.117e^-4	0.996	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14415767	X_14415767_SNP [dm3] X_14521734_SNP [dm6]	A	G	2.124e^-4	0.996	INTERGENIC
X	14415769	X_14415769_SNP [dm3] X_14521736_SNP [dm6]	T	A	2.124e^-4	0.996	INTERGENIC
3L	9562562	3L_9562562_SNP [dm3] 3L_9569462_SNP [dm6]	C	A	2.145e^-4	0.996	INTRON CG42673
2R	19155781	2R_19155781_SNP [dm3] 2R_23268258_SNP [dm6]	A	G	2.153e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	370938	X_370938_INS [dm3] X_476905_INS [dm6]	T	TCAATATATTTACATT...	2.153e^-4	0.996	UPSTREAM CG13373 & 1 other EXON CR18275	TF binding site BDTNP1_TFBS_dl
3L	10854449	3L_10854449_SNP [dm3] 3L_10861349_SNP [dm6]	G	C	2.155e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6165261	2L_6165261_SNP [dm3] 2L_6165261_SNP [dm6]	G	A	2.159e^-4	0.996	INTERGENIC
X	18984048	X_18984048_SNP [dm3] X_19090015_SNP [dm6]	C	A	2.169e^-4	0.996	INTERGENIC
X	18984050	X_18984050_SNP [dm3] X_19090017_SNP [dm6]	G	A	2.169e^-4	0.996	INTERGENIC
X	19623256	X_19623256_DEL [dm3] X_19729223_DEL [dm6]	CTAT	C	2.172e^-4	0.996	UTR_3_PRIME CG12531
X	19623263	X_19623263_DEL [dm3] X_19729230_DEL [dm6]	TA	T	2.172e^-4	0.996	UTR_3_PRIME CG12531
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	2.172e^-4	0.996	UTR_3_PRIME CG12531
2L	13250799	2L_13250799_SNP [dm3] 2L_13250799_SNP [dm6]	A	G	2.177e^-4	0.996	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
3L	14180988	3L_14180988_SNP [dm3] 3L_14187888_SNP [dm6]	T	G	2.185e^-4	0.996	SYNONYMOUS_CODING nan
3L	14181015	3L_14181015_SNP [dm3] 3L_14187915_SNP [dm6]	G	A	2.185e^-4	0.996	SYNONYMOUS_CODING nan
3R	21251801	3R_21251801_DEL [dm3] 3R_25426079_DEL [dm6]	ATTCCCACTACTTACAACAC...	A	2.192e^-4	0.996	INTRON Fur1
X	19623474	X_19623474_SNP [dm3] X_19729441_SNP [dm6]	C	T	2.212e^-4	0.996	UTR_3_PRIME CG12531
2L	19227463	2L_19227463_SNP [dm3] 2L_19227463_SNP [dm6]	G	A	2.212e^-4	0.996	INTERGENIC
3L	9220857	3L_9220857_SNP [dm3] 3L_9227757_SNP [dm6]	C	T	2.222e^-4	0.996	INTERGENIC
2R	16967517	2R_16967517_DEL [dm3] 2R_21080012_DEL [dm6]	TT	T	2.249e^-4	0.996	UPSTREAM Treh INTRON Treh
2L	2419699	2L_2419699_SNP [dm3] 2L_2419699_SNP [dm6]	G	A	2.257e^-4	0.996	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419719	2L_2419719_SNP [dm3] 2L_2419719_SNP [dm6]	G	A	2.257e^-4	0.996	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23823749	3R_23823749_SNP [dm3] 3R_27998027_SNP [dm6]	T	C	2.261e^-4	0.996	INTERGENIC
2R	5317769	2R_5317769_SNP [dm3] 2R_9430264_SNP [dm6]	T	C	2.269e^-4	0.996	INTRON Pdk
2L	19191432	2L_19191432_INS [dm3] 2L_19191432_INS [dm6]	T	TACC	2.270e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1614107	3L_1614107_SNP [dm3] 3L_1614107_SNP [dm6]	A	G	2.272e^-4	0.996	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14120266	2L_14120266_SNP [dm3] 2L_14120266_SNP [dm6]	G	T	2.278e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15903400	3L_15903400_SNP [dm3] 3L_15910300_SNP [dm6]	G	A	2.282e^-4	0.996	INTRON sff	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10735066	X_10735066_SNP [dm3] X_10841033_SNP [dm6]	T	C	2.290e^-4	0.996	INTRON sbr	TF binding site BDTNP1_TFBS_twi
2R	9372401	2R_9372401_SNP [dm3] 2R_13484896_SNP [dm6]	G	A	2.296e^-4	0.996	SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9372403	2R_9372403_SNP [dm3] 2R_13484898_SNP [dm6]	G	A	2.296e^-4	0.996	NON_SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15275692	2R_15275692_SNP [dm3] 2R_19388187_SNP [dm6]	G	A	2.296e^-4	0.996	INTRON CG10081
2R	15275820	2R_15275820_INS [dm3] 2R_19388315_INS [dm6]	A	AA	2.296e^-4	0.996	INTRON CG10081
2L	6710131	2L_6710131_SNP [dm3] 2L_6710131_SNP [dm6]	A	G	2.301e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4336626	2L_4336626_SNP [dm3] 2L_4336626_SNP [dm6]	A	G	2.310e^-4	0.996	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4336656	2L_4336656_SNP [dm3] 2L_4336656_SNP [dm6]	T	C	2.310e^-4	0.996	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11195001	X_11195001_SNP [dm3] X_11300968_SNP [dm6]	C	A	2.335e^-4	0.996	INTRON CG44422
3L	7504794	3L_7504794_SNP [dm3] 3L_7511694_SNP [dm6]	T	C	2.335e^-4	0.996	INTRON CG7546	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18230074	X_18230074_SNP [dm3] X_18336041_SNP [dm6]	C	G	2.343e^-4	0.996	INTRON CG6123
2L	19205663	2L_19205663_DEL [dm3] 2L_19205663_DEL [dm6]	CC	C	2.343e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19205677	2L_19205677_SNP [dm3] 2L_19205677_SNP [dm6]	C	T	2.343e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19205705	2L_19205705_DEL [dm3] 2L_19205705_DEL [dm6]	TT	T	2.343e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5535291	2R_5535291_SNP [dm3] 2R_9647786_SNP [dm6]	C	A	2.345e^-4	0.996	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16315480	X_16315480_SNP [dm3] X_16421447_SNP [dm6]	T	A	2.348e^-4	0.996	INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12272068	2L_12272068_SNP [dm3] 2L_12272068_SNP [dm6]	T	C	2.349e^-4	0.996	SYNONYMOUS_CODING aret	TF binding site mE1_TFBS_cad
3R	4488863	3R_4488863_SNP [dm3] 3R_8663141_SNP [dm6]	A	G	2.356e^-4	0.996	SYNONYMOUS_CODING p UPSTREAM CG8032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18584821	2R_18584821_SNP [dm3] 2R_22697316_SNP [dm6]	G	A	2.365e^-4	0.996	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2387917	3L_2387917_SNP [dm3] 3L_2387917_SNP [dm6]	G	A	2.365e^-4	0.996	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2158228	2L_2158228_SNP [dm3] 2L_2158228_SNP [dm6]	C	T	2.369e^-4	0.996	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11137483	X_11137483_SNP [dm3] X_11243450_SNP [dm6]	G	A	2.369e^-4	0.996	INTRON CG44422
2R	17676078	2R_17676078_SNP [dm3] 2R_21788573_SNP [dm6]	G	T	2.375e^-4	0.996	INTERGENIC
2L	3200058	2L_3200058_SNP [dm3] 2L_3200058_SNP [dm6]	A	G	2.375e^-4	0.996	UPSTREAM CG34393 INTRON CG34393
X	13727151	X_13727151_SNP [dm3] X_13833118_SNP [dm6]	T	A	2.380e^-4	0.996	UTR_3_PRIME AMPdeam INTRON AMPdeam
2L	755467	2L_755467_SNP [dm3] 2L_755467_SNP [dm6]	G	A	2.391e^-4	0.996	INTRON GABA-B-R3
3R	16807239	3R_16807239_SNP [dm3] 3R_20981517_SNP [dm6]	A	C	2.405e^-4	0.996	INTRON Calx
X	10798333	X_10798333_SNP [dm3] X_10904300_SNP [dm6]	G	A	2.407e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8921223	2R_8921223_SNP [dm3] 2R_13033718_SNP [dm6]	T	A	2.411e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921230	2R_8921230_MNP [dm3] 2R_13033725_MNP [dm6]	TGG	ATT	2.411e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8921237	2R_8921237_SNP [dm3] 2R_13033732_SNP [dm6]	C	T	2.411e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8921242	2R_8921242_SNP [dm3] 2R_13033737_SNP [dm6]	T	A	2.411e^-4	0.996	INTERGENIC
2R	8921244	2R_8921244_SNP [dm3] 2R_13033739_SNP [dm6]	G	A	2.411e^-4	0.996	INTERGENIC
2R	8921257	2R_8921257_SNP [dm3] 2R_13033752_SNP [dm6]	C	A	2.411e^-4	0.996	INTERGENIC
2R	8921260	2R_8921260_SNP [dm3] 2R_13033755_SNP [dm6]	A	G	2.411e^-4	0.996	INTERGENIC
2L	703591	2L_703591_SNP [dm3] 2L_703591_SNP [dm6]	A	G	2.412e^-4	0.996	INTRON ds
2L	704544	2L_704544_SNP [dm3] 2L_704544_SNP [dm6]	G	C	2.412e^-4	0.996	INTRON ds
3L	4388003	3L_4388003_SNP [dm3] 3L_4388003_SNP [dm6]	T	G	2.433e^-4	0.996	INTRON slow
3L	6137227	3L_6137227_DEL [dm3] 3L_6144127_DEL [dm6]	AAAAT	A	2.437e^-4	0.996	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8189881	2L_8189881_SNP [dm3] 2L_8189881_SNP [dm6]	T	G	2.440e^-4	0.996	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
X	9506587	X_9506587_SNP [dm3] X_9612554_SNP [dm6]	T	C	2.441e^-4	0.996	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9506975	X_9506975_SNP [dm3] X_9612942_SNP [dm6]	C	G	2.441e^-4	0.996	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507020	X_9507020_INS [dm3] X_9612987_INS [dm6]	C	CTA	2.441e^-4	0.996	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507022	X_9507022_SNP [dm3] X_9612989_SNP [dm6]	G	C	2.441e^-4	0.996	INTRON CG42797	TF binding site mE1_TFBS_cad
X	9507027	X_9507027_SNP [dm3] X_9612994_SNP [dm6]	G	A	2.441e^-4	0.996	INTRON CG42797	TF binding site mE1_TFBS_cad
2L	3171379	2L_3171379_SNP [dm3] 2L_3171379_SNP [dm6]	G	T	2.443e^-4	0.996	UPSTREAM CG44002 EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	11422676	2L_11422676_SNP [dm3] 2L_11422676_SNP [dm6]	C	T	2.448e^-4	0.996	INTERGENIC
2L	4008105	2L_4008105_SNP [dm3] 2L_4008105_SNP [dm6]	A	G	2.449e^-4	0.996	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3L	2127216	3L_2127216_SNP [dm3] 3L_2127216_SNP [dm6]	G	T	2.453e^-4	0.996	SYNONYMOUS_CODING zormin INTRON zormin
2L	13290360	2L_13290360_SNP [dm3] 2L_13290360_SNP [dm6]	C	G	2.469e^-4	0.996	UTR_5_PRIME CG31729 UPSTREAM CG31729 DOWNSTREAM Uvrag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19084560	3R_19084560_SNP [dm3] 3R_23258838_SNP [dm6]	C	T	2.471e^-4	0.996	UPSTREAM CG13827 & 1 other INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14518846	3R_14518846_INS [dm3] 3R_18693124_INS [dm6]	C	TG	2.478e^-4	0.996	UPSTREAM Muc91C DOWNSTREAM CG14300 INTERGENIC
3L	8591055	3L_8591055_SNP [dm3] 3L_8597955_SNP [dm6]	C	G	2.500e^-4	0.996	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_cad
2L	1217652	2L_1217652_SNP [dm3] 2L_1217652_SNP [dm6]	A	G	2.508e^-4	0.996	EXON CR43263
3L	2113863	3L_2113863_SNP [dm3] 3L_2113863_SNP [dm6]	T	C	2.519e^-4	0.996	INTRON sls
3L	10371934	3L_10371934_INS [dm3] 3L_10378834_INS [dm6]	A	AATCA	2.519e^-4	0.996	INTERGENIC
2R	19985667	2R_19985667_SNP [dm3] 2R_24098144_SNP [dm6]	A	T	2.522e^-4	0.996	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23877737	3R_23877737_DEL [dm3] 3R_28052015_DEL [dm6]	AGCTCTC	A	2.552e^-4	0.996	INTRON CG34362
3R	23882550	3R_23882550_SNP [dm3] 3R_28056828_SNP [dm6]	A	G	2.552e^-4	0.996	INTRON CG34362
3R	23882556	3R_23882556_SNP [dm3] 3R_28056834_SNP [dm6]	T	C	2.552e^-4	0.996	INTRON CG34362
2R	19313220	2R_19313220_SNP [dm3] 2R_23425697_SNP [dm6]	G	A	2.552e^-4	0.996	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19313238	2R_19313238_SNP [dm3] 2R_23425715_SNP [dm6]	C	G	2.552e^-4	0.996	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	20211201	3R_20211201_SNP [dm3] 3R_24385479_SNP [dm6]	C	G	2.553e^-4	0.996	UPSTREAM CG17780 DOWNSTREAM CG5768 INTERGENIC
2L	16261038	2L_16261038_SNP [dm3] 2L_16261038_SNP [dm6]	T	C	2.562e^-4	0.996	SYNONYMOUS_CODING twe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19191386	2L_19191386_SNP [dm3] 2L_19191386_SNP [dm6]	T	G	2.566e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2315597	2R_2315597_SNP [dm3] 2R_6428092_SNP [dm6]	G	A	2.571e^-4	0.996	INTERGENIC	transposable element FlyBase
3L	8586247	3L_8586247_SNP [dm3] 3L_8593147_SNP [dm6]	C	T	2.572e^-4	0.996	INTRON CG43078	TF binding site mE1_TFBS_cad
2R	9399114	2R_9399114_SNP [dm3] 2R_13511609_SNP [dm6]	C	T	2.591e^-4	0.996	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16766950	3R_16766950_SNP [dm3] 3R_20941228_SNP [dm6]	T	A	2.608e^-4	0.996	INTRON CG31191
X	17330909	X_17330909_SNP [dm3] X_17436876_SNP [dm6]	C	T	2.622e^-4	0.996	INTRON CG12994
2L	8326462	2L_8326462_SNP [dm3] 2L_8326462_SNP [dm6]	T	G	2.623e^-4	0.996	UPSTREAM CG14275 INTERGENIC
2R	19153849	2R_19153849_SNP [dm3] 2R_23266326_SNP [dm6]	G	A	2.634e^-4	0.996	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4439076	X_4439076_SNP [dm3] X_4545043_SNP [dm6]	A	G	2.635e^-4	0.996	UTR_3_PRIME Usf DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20207776	3R_20207776_SNP [dm3] 3R_24382054_SNP [dm6]	G	T	2.647e^-4	0.996	DOWNSTREAM CG17780 INTERGENIC
3L	8838942	3L_8838942_SNP [dm3] 3L_8845842_SNP [dm6]	C	A	2.663e^-4	0.996	INTRON dally
3R	13757687	3R_13757687_SNP [dm3] 3R_17931965_SNP [dm6]	A	C	2.666e^-4	0.996	UTR_5_PRIME cpo INTRON cpo
3L	17690399	3L_17690399_SNP [dm3] 3L_17697299_SNP [dm6]	T	G	2.668e^-4	0.996	INTRON Ccn
2L	4863957	2L_4863957_SNP [dm3] 2L_4863957_SNP [dm6]	C	T	2.717e^-4	0.996	INTRON pog	TF binding site mE1_TFBS_chinmo
2L	14665199	2L_14665199_SNP [dm3] 2L_14665199_SNP [dm6]	C	T	2.721e^-4	0.996	INTRON osp
3R	3172707	3R_3172707_SNP [dm3] 3R_7346985_SNP [dm6]	A	G	2.745e^-4	0.996	SYNONYMOUS_CODING nxf4 DOWNSTREAM CG31496	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	7994439	3L_7994439_SNP [dm3] 3L_8001339_SNP [dm6]	G	A	2.748e^-4	0.996	INTRON nmo
2L	19191438	2L_19191438_SNP [dm3] 2L_19191438_SNP [dm6]	T	G	2.749e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12750391	X_12750391_SNP [dm3] X_12856358_SNP [dm6]	A	G	2.758e^-4	0.996	SYNONYMOUS_CODING CG4661 INTRON Pde9
X	13697907	X_13697907_SNP [dm3] X_13803874_SNP [dm6]	A	G	2.762e^-4	0.996	INTRON inaE	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16296937	3R_16296937_SNP [dm3] 3R_20471215_SNP [dm6]	G	A	2.773e^-4	0.996	INTRON Gfrl
3R	3157582	3R_3157582_SNP [dm3] 3R_7331860_SNP [dm6]	A	G	2.786e^-4	0.996	EXON CR44337
3R	5527884	3R_5527884_SNP [dm3] 3R_9702162_SNP [dm6]	G	C	2.787e^-4	0.996	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23501442	3R_23501442_SNP [dm3] 3R_27675720_SNP [dm6]	G	A	2.799e^-4	0.996	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15405800	3L_15405800_SNP [dm3] 3L_15412700_SNP [dm6]	A	T	2.811e^-4	0.996	INTERGENIC
2R	19644392	2R_19644392_SNP [dm3] 2R_23756869_SNP [dm6]	T	C	2.822e^-4	0.996	SYNONYMOUS_CODING CG9850 INTRON CG9850
X	443174	X_443174_SNP [dm3] X_549141_SNP [dm6]	C	T	2.822e^-4	0.996	INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3L	10371930	3L_10371930_SNP [dm3] 3L_10378830_SNP [dm6]	T	A	2.827e^-4	0.996	INTERGENIC
2R	20077244	2R_20077244_SNP [dm3] 2R_24189721_SNP [dm6]	A	G	2.828e^-4	0.996	INTRON ocm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	20077273	2R_20077273_SNP [dm3] 2R_24189750_SNP [dm6]	T	A	2.828e^-4	0.996	INTRON ocm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	9322303	3L_9322303_SNP [dm3] 3L_9329203_SNP [dm6]	A	G	2.830e^-4	0.996	INTERGENIC
2R	12683407	2R_12683407_SNP [dm3] 2R_16795902_SNP [dm6]	A	T	2.833e^-4	0.996	INTRON CG15615
2R	12683409	2R_12683409_SNP [dm3] 2R_16795904_SNP [dm6]	C	G	2.833e^-4	0.996	INTRON CG15615
3L	17690345	3L_17690345_SNP [dm3] 3L_17697245_SNP [dm6]	G	A	2.841e^-4	0.996	INTRON Ccn
2R	5536130	2R_5536130_SNP [dm3] 2R_9648625_SNP [dm6]	T	G	2.843e^-4	0.996	INTRON Mmp2
2L	3865846	2L_3865846_SNP [dm3] 2L_3865846_SNP [dm6]	C	A	2.847e^-4	0.996	SYNONYMOUS_CODING CG3964	TF binding site mE1_TFBS_cad
2L	5616595	2L_5616595_SNP [dm3] 2L_5616595_SNP [dm6]	C	T	2.853e^-4	0.996	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3173055	3R_3173055_SNP [dm3] 3R_7347333_SNP [dm6]	A	G	2.853e^-4	0.996	SYNONYMOUS_CODING nxf4 DOWNSTREAM CG31496	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	5921476	X_5921476_SNP [dm3] X_6027443_SNP [dm6]	T	C	2.860e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1010871	3L_1010871_SNP [dm3] 3L_1010871_SNP [dm6]	T	C	2.876e^-4	0.996	INTRON trio
2L	13918317	2L_13918317_SNP [dm3] 2L_13918317_SNP [dm6]	A	G	2.882e^-4	0.996	INTRON Ance-3
3R	13246530	3R_13246530_SNP [dm3] 3R_17420808_SNP [dm6]	G	T	2.888e^-4	0.996	SYNONYMOUS_CODING CG42835 DOWNSTREAM CG14332
3L	10371840	3L_10371840_SNP [dm3] 3L_10378740_SNP [dm6]	C	T	2.896e^-4	0.996	INTERGENIC
2L	2002655	2L_2002655_SNP [dm3] 2L_2002655_SNP [dm6]	A	C	2.901e^-4	0.996	INTRON CG33543 & 1 other
2L	16048767	2L_16048767_SNP [dm3] 2L_16048767_SNP [dm6]	A	T	2.918e^-4	0.996	DOWNSTREAM BicC & 1 other INTERGENIC
X	18983994	X_18983994_SNP [dm3] X_19089961_SNP [dm6]	T	C	2.933e^-4	0.996	INTERGENIC
3L	3314689	3L_3314689_SNP [dm3] 3L_3314689_SNP [dm6]	G	A	2.935e^-4	0.996	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC
3L	2898300	3L_2898300_SNP [dm3] 3L_2898300_SNP [dm6]	C	T	2.936e^-4	0.996	INTRON Shab
2L	2130146	2L_2130146_SNP [dm3] 2L_2130146_SNP [dm6]	A	T	2.956e^-4	0.996	UPSTREAM CG4259 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	13918272	2L_13918272_SNP [dm3] 2L_13918272_SNP [dm6]	G	A	2.958e^-4	0.996	INTRON Ance-3
2L	16260987	2L_16260987_SNP [dm3] 2L_16260987_SNP [dm6]	A	T	2.958e^-4	0.996	SYNONYMOUS_CODING twe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15990118	2L_15990118_SNP [dm3] 2L_15990118_SNP [dm6]	A	T	2.973e^-4	0.996	DOWNSTREAM CR43412 INTERGENIC
2L	20013258	2L_20013258_SNP [dm3] 2L_20013258_SNP [dm6]	C	A	2.996e^-4	0.996	INTRON CG43861
X	21315262	X_21315262_SNP [dm3] X_21444235_SNP [dm6]	C	T	2.999e^-4	0.996	INTRON CG42343
3R	16316834	3R_16316834_DEL [dm3] 3R_20491112_DEL [dm6]	ACCGA	A	3.003e^-4	0.996	INTERGENIC
2L	14671889	2L_14671889_SNP [dm3] 2L_14671889_SNP [dm6]	T	C	3.008e^-4	0.996	INTRON osp
2L	12199706	2L_12199706_SNP [dm3] 2L_12199706_SNP [dm6]	T	C	3.015e^-4	0.996	INTRON aret
2L	6710367	2L_6710367_SNP [dm3] 2L_6710367_SNP [dm6]	A	C	3.015e^-4	0.996	DOWNSTREAM AkhR INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8829975	2R_8829975_SNP [dm3] 2R_12942470_SNP [dm6]	T	G	3.019e^-4	0.996	INTRON Mdr49
2R	17271950	2R_17271950_SNP [dm3] 2R_21384445_SNP [dm6]	A	T	3.035e^-4	0.996	UPSTREAM CG10795 DOWNSTREAM EfSec INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18467400	3R_18467400_SNP [dm3] 3R_22641678_SNP [dm6]	T	G	3.036e^-4	0.996	INTRON CG45058
3L	10618359	3L_10618359_SNP [dm3] 3L_10625259_SNP [dm6]	A	G	3.078e^-4	0.996	SYNONYMOUS_CODING CG43127
2R	18462956	2R_18462956_SNP [dm3] 2R_22575451_SNP [dm6]	A	C	3.082e^-4	0.996	INTRON dnr1
X	540807	X_540807_SNP [dm3] X_646774_SNP [dm6]	T	G	3.131e^-4	0.996	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC
X	3164097	X_3164097_SNP [dm3] X_3270064_SNP [dm6]	A	G	3.132e^-4	0.996	INTRON dnc
3R	823553	3R_823553_SNP [dm3] 3R_4997831_SNP [dm6]	C	T	3.135e^-4	0.996	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9953347	3L_9953347_SNP [dm3] 3L_9960247_SNP [dm6]	A	T	3.136e^-4	0.996	INTRON CG34356
X	6240033	X_6240033_SNP [dm3] X_6346000_SNP [dm6]	A	G	3.141e^-4	0.996	INTERGENIC
2R	19316376	2R_19316376_SNP [dm3] 2R_23428853_SNP [dm6]	A	T	3.143e^-4	0.996	INTRON CG9815
2R	19316445	2R_19316445_SNP [dm3] 2R_23428922_SNP [dm6]	T	C	3.143e^-4	0.996	INTRON CG9815
2R	16759914	2R_16759914_SNP [dm3] 2R_20872409_SNP [dm6]	A	G	3.148e^-4	0.996	INTRON Ipk1
2R	17387929	2R_17387929_SNP [dm3] 2R_21500424_SNP [dm6]	A	G	3.151e^-4	0.996	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18842740	2R_18842740_SNP [dm3] 2R_22955217_SNP [dm6]	T	G	3.152e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17185063	X_17185063_INS [dm3] X_17291030_INS [dm6]	A	ATTCAA	3.167e^-4	0.996	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_cad
2R	14560239	2R_14560239_SNP [dm3] 2R_18672734_SNP [dm6]	A	G	3.173e^-4	0.996	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	622180	3L_622180_SNP [dm3] 3L_622180_SNP [dm6]	A	T	3.183e^-4	0.996	UTR_5_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	21142798	2L_21142798_SNP [dm3] 2L_21142798_SNP [dm6]	C	T	3.189e^-4	0.996	UPSTREAM CG9253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
4	464800	4_464800_SNP [dm3] 4_444174_SNP [dm6]	G	A	3.197e^-4	0.996	UPSTREAM lgs INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12910993	3L_12910993_SNP [dm3] 3L_12917893_SNP [dm6]	C	T	3.201e^-4	0.996	INTERGENIC
2L	9514860	2L_9514860_SNP [dm3] 2L_9514860_SNP [dm6]	G	C	3.210e^-4	0.996	INTRON CG33298
2R	15995167	2R_15995167_SNP [dm3] 2R_20107662_SNP [dm6]	C	T	3.230e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	2273297	3L_2273297_SNP [dm3] 3L_2273297_SNP [dm6]	A	G	3.271e^-4	0.996	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
2L	10818988	2L_10818988_SNP [dm3] 2L_10818988_SNP [dm6]	G	A	3.271e^-4	0.996	UPSTREAM CG6508 INTRON Nos
2R	18750167	2R_18750167_SNP [dm3] 2R_22862644_SNP [dm6]	T	A	3.278e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3258273	X_3258273_SNP [dm3] X_3364240_SNP [dm6]	C	G	3.281e^-4	0.996	INTERGENIC
2R	2400277	2R_2400277_DEL [dm3] 2R_6512772_DEL [dm6]	CAT	C	3.291e^-4	0.996	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	2400282	2R_2400282_DEL [dm3] 2R_6512777_DEL [dm6]	CGCA	C	3.291e^-4	0.996	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	2400292	2R_2400292_SNP [dm3] 2R_6512787_SNP [dm6]	T	C	3.291e^-4	0.996	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	21315468	X_21315468_SNP [dm3] X_21444441_SNP [dm6]	G	A	3.292e^-4	0.996	INTRON CG42343
2L	20398354	2L_20398354_SNP [dm3] 2L_20398354_SNP [dm6]	A	C	3.293e^-4	0.996	INTRON CG10947
3R	25817035	3R_25817035_SNP [dm3] 3R_29991313_SNP [dm6]	T	C	3.312e^-4	0.996	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
3L	5719080	3L_5719080_SNP [dm3] 3L_5725980_SNP [dm6]	T	A	3.337e^-4	0.996	INTRON sif
2L	20391689	2L_20391689_SNP [dm3] 2L_20391689_SNP [dm6]	G	A	3.342e^-4	0.996	INTRON CG10947
X	10194370	X_10194370_SNP [dm3] X_10300337_SNP [dm6]	A	G	3.349e^-4	0.996	INTRON alpha-Man-I
2L	1170053	2L_1170053_SNP [dm3] 2L_1170053_SNP [dm6]	G	C	3.350e^-4	0.996	UTR_5_PRIME Plap UPSTREAM CG31922 & 1 other DOWNSTREAM CG5118 INTRON Plap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8438335	3L_8438335_SNP [dm3] 3L_8445235_SNP [dm6]	A	G	3.354e^-4	0.996	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7435372	2R_7435372_SNP [dm3] 2R_11547867_SNP [dm6]	G	C	3.369e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10777478	2L_10777478_SNP [dm3] 2L_10777478_SNP [dm6]	T	A	3.383e^-4	0.996	INTRON CG31869
2R	9012164	2R_9012164_SNP [dm3] 2R_13124659_SNP [dm6]	G	T	3.383e^-4	0.996	SYNONYMOUS_CODING CG13325
3L	2108140	3L_2108140_SNP [dm3] 3L_2108140_SNP [dm6]	G	A	3.402e^-4	0.996	INTRON sls
3L	2108143	3L_2108143_SNP [dm3] 3L_2108143_SNP [dm6]	C	A	3.402e^-4	0.996	INTRON sls
2L	1752299	2L_1752299_SNP [dm3] 2L_1752299_SNP [dm6]	A	T	3.414e^-4	0.996	UPSTREAM CG17648 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3158308	2L_3158308_SNP [dm3] 2L_3158308_SNP [dm6]	T	A	3.419e^-4	0.996	INTRON Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	17174124	2R_17174124_SNP [dm3] 2R_21286619_SNP [dm6]	T	C	3.422e^-4	0.996	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3L	17690365	3L_17690365_SNP [dm3] 3L_17697265_SNP [dm6]	C	T	3.423e^-4	0.996	INTRON Ccn
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	3.425e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	19976578	2R_19976578_SNP [dm3] 2R_24089055_SNP [dm6]	C	T	3.426e^-4	0.996	SYNONYMOUS_CODING snama
X	19519454	X_19519454_SNP [dm3] X_19625421_SNP [dm6]	A	G	3.446e^-4	0.996	UTR_3_PRIME MKP-4 UPSTREAM CG14212 DOWNSTREAM MKP-4
3R	17660105	3R_17660105_SNP [dm3] 3R_21834383_SNP [dm6]	G	A	3.451e^-4	0.996	DOWNSTREAM Gr93a INTERGENIC
3R	5754527	3R_5754527_SNP [dm3] 3R_9928805_SNP [dm6]	G	A	3.452e^-4	0.996	UPSTREAM Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26460852	3R_26460852_SNP [dm3] 3R_30635130_SNP [dm6]	G	A	3.454e^-4	0.996	INTERGENIC
3L	5730520	3L_5730520_SNP [dm3] 3L_5737420_SNP [dm6]	G	A	3.496e^-4	0.996	INTRON sif
2L	11802990	2L_11802990_SNP [dm3] 2L_11802990_SNP [dm6]	C	A	3.509e^-4	0.996	SYNONYMOUS_CODING crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9218075	3R_9218075_SNP [dm3] 3R_13392353_SNP [dm6]	A	G	3.511e^-4	0.996	INTRON CCHa2
2R	7431697	2R_7431697_SNP [dm3] 2R_11544192_SNP [dm6]	G	A	3.515e^-4	0.996	INTERGENIC
X	10798279	X_10798279_SNP [dm3] X_10904246_SNP [dm6]	T	A	3.519e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10736507	X_10736507_SNP [dm3] X_10842474_SNP [dm6]	A	G	3.521e^-4	0.996	NON_SYNONYMOUS_CODING CG15209 DOWNSTREAM CG32669 INTRON sbr
3L	8833833	3L_8833833_INS [dm3] 3L_8840733_INS [dm6]	A	AA	3.539e^-4	0.996	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17362718	2R_17362718_SNP [dm3] 2R_21475213_SNP [dm6]	T	C	3.544e^-4	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	17363167	2R_17363167_SNP [dm3] 2R_21475662_SNP [dm6]	C	G	3.544e^-4	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16420514	2R_16420514_INS [dm3] 2R_20533009_INS [dm6]	A	ACAATATATAC...	3.553e^-4	0.996	UPSTREAM CG30154 DOWNSTREAM CR44651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13505129	X_13505129_SNP [dm3] X_13611096_SNP [dm6]	C	T	3.558e^-4	0.996	SYNONYMOUS_CODING Ndc80	TF binding site mE1_TFBS_sens
3L	5625668	3L_5625668_SNP [dm3] 3L_5632568_SNP [dm6]	A	G	3.564e^-4	0.996	INTRON Blimp-1
2R	16759912	2R_16759912_SNP [dm3] 2R_20872407_SNP [dm6]	G	T	3.575e^-4	0.996	INTRON Ipk1
3L	2305326	3L_2305326_SNP [dm3] 3L_2305326_SNP [dm6]	A	T	3.580e^-4	0.996	INTERGENIC
3L	4438402	3L_4438402_SNP [dm3] 3L_4438402_SNP [dm6]	A	G	3.580e^-4	0.996	DOWNSTREAM CG15021 INTERGENIC
3L	4438428	3L_4438428_SNP [dm3] 3L_4438428_SNP [dm6]	G	T	3.581e^-4	0.996	DOWNSTREAM CG15021 INTERGENIC
3R	23527595	3R_23527595_SNP [dm3] 3R_27701873_SNP [dm6]	C	A	3.598e^-4	0.996	NON_SYNONYMOUS_CODING btz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14883042	2R_14883042_SNP [dm3] 2R_18995537_SNP [dm6]	A	G	3.601e^-4	0.996	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	14883056	2R_14883056_SNP [dm3] 2R_18995551_SNP [dm6]	T	G	3.601e^-4	0.996	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	14883612	2R_14883612_SNP [dm3] 2R_18996107_SNP [dm6]	T	A	3.601e^-4	0.996	INTRON tn
X	3719642	X_3719642_SNP [dm3] X_3825609_SNP [dm6]	A	T	3.615e^-4	0.996	INTRON ec
2L	10460566	2L_10460566_SNP [dm3] 2L_10460566_SNP [dm6]	G	T	3.616e^-4	0.996	INTRON LM408
3L	16748232	3L_16748232_SNP [dm3] 3L_16755132_SNP [dm6]	C	G	3.616e^-4	0.996	UPSTREAM CG42852 INTERGENIC
2R	10954426	2R_10954426_SNP [dm3] 2R_15066921_SNP [dm6]	T	A	3.619e^-4	0.996	INTERGENIC
2R	10954429	2R_10954429_SNP [dm3] 2R_15066924_SNP [dm6]	G	A	3.619e^-4	0.996	INTERGENIC
2R	10954432	2R_10954432_SNP [dm3] 2R_15066927_SNP [dm6]	G	C	3.619e^-4	0.996	INTERGENIC
3L	10371844	3L_10371844_SNP [dm3] 3L_10378744_SNP [dm6]	C	A	3.628e^-4	0.996	INTERGENIC
2R	19153875	2R_19153875_SNP [dm3] 2R_23266352_SNP [dm6]	T	A	3.632e^-4	0.996	UPSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4439143	3R_4439143_SNP [dm3] 3R_8613421_SNP [dm6]	C	T	3.636e^-4	0.996	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3L	2108153	3L_2108153_SNP [dm3] 3L_2108153_SNP [dm6]	C	T	3.642e^-4	0.996	INTRON sls
X	3520505	X_3520505_SNP [dm3] X_3626472_SNP [dm6]	G	A	3.651e^-4	0.996	INTRON AstA-R1
3L	2659752	3L_2659752_SNP [dm3] 3L_2659752_SNP [dm6]	A	T	3.655e^-4	0.996	INTRON Fife & 1 other
3L	2905694	3L_2905694_INS [dm3] 3L_2905694_INS [dm6]	A	ATGTGCGCCTAGGA...	3.657e^-4	0.996	INTRON Shab
3L	16949708	3L_16949708_SNP [dm3] 3L_16956608_SNP [dm6]	T	A	3.663e^-4	0.996	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2355330	3L_2355330_SNP [dm3] 3L_2355330_SNP [dm6]	C	T	3.670e^-4	0.996	INTERGENIC
2R	19662888	2R_19662888_SNP [dm3] 2R_23775365_SNP [dm6]	C	A	3.681e^-4	0.996	INTRON CG9850
3L	2825745	3L_2825745_SNP [dm3] 3L_2825745_SNP [dm6]	G	T	3.705e^-4	0.996	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
X	18047937	X_18047937_SNP [dm3] X_18153904_SNP [dm6]	A	C	3.727e^-4	0.996	INTERGENIC
2L	7005792	2L_7005792_SNP [dm3] 2L_7005792_SNP [dm6]	G	A	3.730e^-4	0.996	INTRON uif	TF binding site BDTNP1_TFBS_hb
2L	8058522	2L_8058522_SNP [dm3] 2L_8058522_SNP [dm6]	A	G	3.743e^-4	0.996	SYNONYMOUS_CODING poe
2L	6168682	2L_6168682_SNP [dm3] 2L_6168682_SNP [dm6]	T	A	3.749e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_cad
X	2322706	X_2322706_SNP [dm3] X_2428673_SNP [dm6]	T	C	3.750e^-4	0.996	SYNONYMOUS_CODING gt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8189875	2L_8189875_SNP [dm3] 2L_8189875_SNP [dm6]	A	G	3.773e^-4	0.996	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2R	17100512	2R_17100512_SNP [dm3] 2R_21213007_SNP [dm6]	C	T	3.785e^-4	0.996	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245
2L	12148044	2L_12148044_SNP [dm3] 2L_12148044_SNP [dm6]	G	T	3.796e^-4	0.996	INTRON CG31760
X	18224222	X_18224222_SNP [dm3] X_18330189_SNP [dm6]	T	A	3.803e^-4	0.996	INTRON CG6123
X	18224246	X_18224246_SNP [dm3] X_18330213_SNP [dm6]	T	G	3.803e^-4	0.996	INTRON CG6123
X	17158415	X_17158415_SNP [dm3] X_17264382_SNP [dm6]	A	C	3.806e^-4	0.996	INTRON f	TF binding site mE1_TFBS_inv
3L	12432305	3L_12432305_SNP [dm3] 3L_12439205_SNP [dm6]	T	C	3.808e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11021784	2R_11021784_SNP [dm3] 2R_15134279_SNP [dm6]	A	T	3.813e^-4	0.996	INTRON chn	TF binding site BDTNP1_TFBS_da
2R	7953777	2R_7953777_SNP [dm3] 2R_12066272_SNP [dm6]	T	A	3.817e^-4	0.996	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	20545944	2R_20545944_SNP [dm3] 2R_24658421_SNP [dm6]	A	G	3.825e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16327845	3R_16327845_DEL [dm3] 3R_20502123_DEL [dm6]	TTA	T	3.830e^-4	0.996	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	16728947	2L_16728947_SNP [dm3] 2L_16728947_SNP [dm6]	T	C	3.831e^-4	0.996	UPSTREAM CG31812 EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17173311	2R_17173311_SNP [dm3] 2R_21285806_SNP [dm6]	T	C	3.836e^-4	0.996	NON_SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3L	19998492	3L_19998492_SNP [dm3] 3L_20005392_SNP [dm6]	G	A	3.849e^-4	0.996	UTR_5_PRIME kug DOWNSTREAM CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	2306292	X_2306292_SNP [dm3] X_2412259_SNP [dm6]	C	T	3.852e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr
2L	7510320	2L_7510320_SNP [dm3] 2L_7510320_SNP [dm6]	A	C	3.869e^-4	0.996	INTRON RapGAP1
2R	16678608	2R_16678608_SNP [dm3] 2R_20791103_SNP [dm6]	A	G	3.885e^-4	0.996	UTR_5_PRIME CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
X	13600091	X_13600091_SNP [dm3] X_13706058_SNP [dm6]	C	T	3.885e^-4	0.996	INTRON NnaD & 1 other
X	2322871	X_2322871_SNP [dm3] X_2428838_SNP [dm6]	C	T	3.886e^-4	0.996	SYNONYMOUS_CODING gt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	4275889	3R_4275889_SNP [dm3] 3R_8450167_SNP [dm6]	A	G	3.888e^-4	0.996	INTRON CG45263
2L	2419753	2L_2419753_SNP [dm3] 2L_2419753_SNP [dm6]	A	G	3.894e^-4	0.996	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	10894834	3L_10894834_SNP [dm3] 3L_10901734_SNP [dm6]	A	G	3.909e^-4	0.996	INTERGENIC
3L	10894836	3L_10894836_SNP [dm3] 3L_10901736_SNP [dm6]	A	T	3.909e^-4	0.996	INTERGENIC
3L	18583668	3L_18583668_SNP [dm3] 3L_18590568_SNP [dm6]	T	A	3.922e^-4	0.996	DOWNSTREAM CG7271 INTERGENIC
2R	14658960	2R_14658960_SNP [dm3] 2R_18771455_SNP [dm6]	A	C	3.925e^-4	0.996	UPSTREAM Mctp INTRON Mctp
3R	13757685	3R_13757685_SNP [dm3] 3R_17931963_SNP [dm6]	A	G	3.931e^-4	0.996	UTR_5_PRIME cpo INTRON cpo
3L	7451180	3L_7451180_SNP [dm3] 3L_7458080_SNP [dm6]	A	G	3.932e^-4	0.996	INTRON ppk26
2L	14719364	2L_14719364_SNP [dm3] 2L_14719364_SNP [dm6]	C	A	3.938e^-4	0.996	INTERGENIC
3L	18186106	3L_18186106_SNP [dm3] 3L_18193006_SNP [dm6]	G	A	3.943e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10046693	3L_10046693_SNP [dm3] 3L_10053593_SNP [dm6]	C	T	3.943e^-4	0.996	INTRON dpr6
2L	12375874	2L_12375874_SNP [dm3] 2L_12375874_SNP [dm6]	G	C	3.946e^-4	0.996	INTRON bru-2
2R	8829931	2R_8829931_SNP [dm3] 2R_12942426_SNP [dm6]	T	C	3.946e^-4	0.996	INTRON Mdr49
3L	7907328	3L_7907328_SNP [dm3] 3L_7914228_SNP [dm6]	G	T	3.956e^-4	0.996	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
X	3457730	X_3457730_SNP [dm3] X_3563697_SNP [dm6]	T	A	3.964e^-4	0.996	INTRON CG32791 & 1 other
3L	6073694	3L_6073694_SNP [dm3] 3L_6080594_SNP [dm6]	C	A	3.967e^-4	0.996	NON_SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6074034	3L_6074034_SNP [dm3] 3L_6080934_SNP [dm6]	C	T	3.967e^-4	0.996	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4301447	3R_4301447_SNP [dm3] 3R_8475725_SNP [dm6]	A	G	3.976e^-4	0.996	INTRON CG45263	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18177025	3R_18177025_SNP [dm3] 3R_22351303_SNP [dm6]	C	T	3.981e^-4	0.996	UPSTREAM rdhB INTERGENIC
2L	11801565	2L_11801565_SNP [dm3] 2L_11801565_SNP [dm6]	G	A	3.983e^-4	0.996	INTRON crol	TF binding site mE1_TFBS_cad
3L	7384925	3L_7384925_SNP [dm3] 3L_7391825_SNP [dm6]	T	C	3.986e^-4	0.996	INTRON CG8563
3L	7498774	3L_7498774_SNP [dm3] 3L_7505674_SNP [dm6]	G	A	4.016e^-4	0.996	SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
2L	10575498	2L_10575498_SNP [dm3] 2L_10575498_SNP [dm6]	A	G	4.041e^-4	0.996	DOWNSTREAM w-cup INTRON Trim9
2L	9444907	2L_9444907_SNP [dm3] 2L_9444907_SNP [dm6]	C	T	4.045e^-4	0.996	INTRON numb
2R	19216606	2R_19216606_SNP [dm3] 2R_23329083_SNP [dm6]	A	G	4.057e^-4	0.996	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4008041	2L_4008041_SNP [dm3] 2L_4008041_SNP [dm6]	T	C	4.071e^-4	0.996	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3R	21329841	3R_21329841_SNP [dm3] 3R_25504119_SNP [dm6]	C	T	4.074e^-4	0.996	DOWNSTREAM CR43457 EXON CR45651	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10846437	2L_10846437_SNP [dm3] 2L_10846437_SNP [dm6]	C	T	4.076e^-4	0.996	SYNONYMOUS_CODING Porin2 UPSTREAM CG17139 & 1 other DOWNSTREAM porin
2L	10846440	2L_10846440_SNP [dm3] 2L_10846440_SNP [dm6]	T	C	4.076e^-4	0.996	SYNONYMOUS_CODING Porin2 UPSTREAM CG17139 & 1 other DOWNSTREAM porin
2L	13278863	2L_13278863_SNP [dm3] 2L_13278863_SNP [dm6]	C	T	4.090e^-4	0.996	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5052055	3L_5052055_SNP [dm3] 3L_5052055_SNP [dm6]	T	C	4.096e^-4	0.996	UPSTREAM CR43884 INTRON Con
2R	10603639	2R_10603639_SNP [dm3] 2R_14716134_SNP [dm6]	G	A	4.100e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24367409	3R_24367409_SNP [dm3] 3R_28541687_SNP [dm6]	C	T	4.115e^-4	0.996	DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
3R	18466082	3R_18466082_DEL [dm3] 3R_22640360_DEL [dm6]	AA	A	4.117e^-4	0.996	UPSTREAM loco INTRON CG45058	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11742660	X_11742660_SNP [dm3] X_11848627_SNP [dm6]	A	C	4.125e^-4	0.996	INTERGENIC
2L	11761250	2L_11761250_SNP [dm3] 2L_11761250_SNP [dm6]	T	C	4.131e^-4	0.996	INTERGENIC
2L	4007168	2L_4007168_SNP [dm3] 2L_4007168_SNP [dm6]	G	A	4.141e^-4	0.996	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
3L	7515160	3L_7515160_SNP [dm3] 3L_7522060_SNP [dm6]	T	G	4.146e^-4	0.996	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12103492	X_12103492_SNP [dm3] X_12209459_SNP [dm6]	A	T	4.147e^-4	0.996	INTRON Ten-a
X	18831088	X_18831088_SNP [dm3] X_18937055_SNP [dm6]	A	G	4.150e^-4	0.996	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5882770	2L_5882770_SNP [dm3] 2L_5882770_SNP [dm6]	A	C	4.162e^-4	0.996	UPSTREAM CG44574 INTERGENIC
2L	16573289	2L_16573289_SNP [dm3] 2L_16573289_SNP [dm6]	G	A	4.174e^-4	0.996	INTRON CG42389
X	21071799	X_21071799_SNP [dm3] X_21200772_SNP [dm6]	T	C	4.194e^-4	0.996	INTERGENIC
3L	2113536	3L_2113536_SNP [dm3] 3L_2113536_SNP [dm6]	A	G	4.198e^-4	0.996	INTRON sls
2L	19181056	2L_19181056_SNP [dm3] 2L_19181056_SNP [dm6]	T	G	4.199e^-4	0.996	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19181132	2L_19181132_SNP [dm3] 2L_19181132_SNP [dm6]	C	T	4.199e^-4	0.996	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20332857	2L_20332857_DEL [dm3] 2L_20332857_DEL [dm6]	AT	A	4.201e^-4	0.996	INTRON spir	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16708014	2R_16708014_SNP [dm3] 2R_20820509_SNP [dm6]	C	T	4.206e^-4	0.996	DOWNSTREAM insc INTERGENIC
2R	16708034	2R_16708034_SNP [dm3] 2R_20820529_SNP [dm6]	T	C	4.206e^-4	0.996	DOWNSTREAM insc INTERGENIC
3R	20300701	3R_20300701_SNP [dm3] 3R_24474979_SNP [dm6]	C	G	4.208e^-4	0.996	INTERGENIC
2R	10267034	2R_10267034_SNP [dm3] 2R_14379529_SNP [dm6]	T	A	4.239e^-4	0.996	INTRON Dh44-R1
3L	10893725	3L_10893725_DEL [dm3] 3L_10900625_DEL [dm6]	GCAATGG	G	4.242e^-4	0.996	INTERGENIC
2L	7290304	2L_7290304_SNP [dm3] 2L_7290304_SNP [dm6]	A	T	4.250e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1466608	2L_1466608_INS [dm3] 2L_1466608_INS [dm6]	A	CT	4.262e^-4	0.996	INTERGENIC
3L	6982459	3L_6982459_SNP [dm3] 3L_6989359_SNP [dm6]	C	T	4.279e^-4	0.996	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10376899	2R_10376899_SNP [dm3] 2R_14489394_SNP [dm6]	A	G	4.280e^-4	0.996	INTRON L
2R	10376902	2R_10376902_SNP [dm3] 2R_14489397_SNP [dm6]	T	A	4.280e^-4	0.996	INTRON L
2L	19196886	2L_19196886_SNP [dm3] 2L_19196886_SNP [dm6]	C	T	4.309e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16748278	3L_16748278_SNP [dm3] 3L_16755178_SNP [dm6]	C	T	4.310e^-4	0.996	UPSTREAM CG42852 INTERGENIC
3L	11620930	3L_11620930_SNP [dm3] 3L_11627830_SNP [dm6]	G	A	4.310e^-4	0.996	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	15955134	2L_15955134_SNP [dm3] 2L_15955134_SNP [dm6]	T	A	4.312e^-4	0.996	INTRON beat-Ib
2R	19612837	2R_19612837_SNP [dm3] 2R_23725314_SNP [dm6]	C	T	4.317e^-4	0.996	INTRON Sesn
3L	8222599	3L_8222599_SNP [dm3] 3L_8229499_SNP [dm6]	C	A	4.328e^-4	0.996	NON_SYNONYMOUS_CODING eIF4E-3 SPLICE_SITE_REGION eIF4E-3
2L	13282580	2L_13282580_SNP [dm3] 2L_13282580_SNP [dm6]	A	G	4.335e^-4	0.996	INTRON CG44085
3L	3720223	3L_3720223_SNP [dm3] 3L_3720223_SNP [dm6]	T	C	4.337e^-4	0.996	INTRON CG32264
3R	7071263	3R_7071263_SNP [dm3] 3R_11245541_SNP [dm6]	A	C	4.353e^-4	0.996	SYNONYMOUS_CODING CG5214	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	356755	X_356755_SNP [dm3] X_462722_SNP [dm6]	A	T	4.353e^-4	0.996	UTR_3_PRIME ase INTRON CG32816	regulatory region REDfly_CRMs
2L	16501214	2L_16501214_SNP [dm3] 2L_16501214_SNP [dm6]	T	C	4.355e^-4	0.996	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2549510	3L_2549510_SNP [dm3] 3L_2549510_SNP [dm6]	C	T	4.355e^-4	0.996	INTRON Spn
3R	14593268	3R_14593268_SNP [dm3] 3R_18767546_SNP [dm6]	A	C	4.371e^-4	0.996	INTRON CG7720
3R	23495354	3R_23495354_SNP [dm3] 3R_27669632_SNP [dm6]	T	A	4.375e^-4	0.996	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	377895	X_377895_SNP [dm3] X_483862_SNP [dm6]	C	A	4.385e^-4	0.996	INTRON CG18273	TF binding site mE1_TFBS_sens
2L	12808921	2L_12808921_SNP [dm3] 2L_12808921_SNP [dm6]	G	T	4.387e^-4	0.996	UPSTREAM CR43818 INTERGENIC
3L	19070335	3L_19070335_INS [dm3] 3L_19077235_INS [dm6]	T	TCAATGGAGTTAAGAGTTAT...	4.389e^-4	0.996	INTRON Mkp3
X	12179769	X_12179769_SNP [dm3] X_12285736_SNP [dm6]	G	A	4.391e^-4	0.996	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3R	19951958	3R_19951958_SNP [dm3] 3R_24126236_SNP [dm6]	G	C	4.404e^-4	0.996	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20573478	3R_20573478_SNP [dm3] 3R_24747756_SNP [dm6]	A	G	4.407e^-4	0.996	SYNONYMOUS_CODING tok	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2L	12617411	2L_12617411_SNP [dm3] 2L_12617411_SNP [dm6]	C	T	4.421e^-4	0.996	UPSTREAM nub INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	19745599	3R_19745599_SNP [dm3] 3R_23919877_SNP [dm6]	C	A	4.439e^-4	0.996	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2107866	3L_2107866_SNP [dm3] 3L_2107866_SNP [dm6]	T	A	4.454e^-4	0.996	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26366127	3R_26366127_SNP [dm3] 3R_30540405_SNP [dm6]	G	T	4.464e^-4	0.996	INTRON tmod
3L	4422344	3L_4422344_SNP [dm3] 3L_4422344_SNP [dm6]	G	A	4.467e^-4	0.996	INTRON CG15020
3L	4422354	3L_4422354_SNP [dm3] 3L_4422354_SNP [dm6]	G	A	4.467e^-4	0.996	INTRON CG15020
3L	17224527	3L_17224527_SNP [dm3] 3L_17231427_SNP [dm6]	T	A	4.470e^-4	0.996	INTRON Rbp6
2L	2424610	2L_2424610_SNP [dm3] 2L_2424610_SNP [dm6]	C	T	4.471e^-4	0.996	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	17723043	2L_17723043_SNP [dm3] 2L_17723043_SNP [dm6]	C	T	4.489e^-4	0.996	INTRON CadN	TF binding site BDTNP1_TFBS_dl
2R	3586817	2R_3586817_SNP [dm3] 2R_7699312_SNP [dm6]	C	T	4.507e^-4	0.996	UTR_5_PRIME CG30493 UPSTREAM CG30496 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3187915	3R_3187915_SNP [dm3] 3R_7362193_SNP [dm6]	T	G	4.532e^-4	0.996	UPSTREAM CG17944 INTERGENIC
X	6718761	X_6718761_SNP [dm3] X_6824728_SNP [dm6]	C	T	4.539e^-4	0.996	SYNONYMOUS_CODING nonC DOWNSTREAM Atx-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23357892	3R_23357892_SNP [dm3] 3R_27532170_SNP [dm6]	T	C	4.544e^-4	0.996	NON_SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
3L	12846455	3L_12846455_SNP [dm3] 3L_12853355_SNP [dm6]	T	A	4.554e^-4	0.996	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2L	7539778	2L_7539778_SNP [dm3] 2L_7539778_SNP [dm6]	C	T	4.565e^-4	0.996	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8785193	2R_8785193_SNP [dm3] 2R_12897688_SNP [dm6]	G	C	4.570e^-4	0.996	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6536600	2R_6536600_SNP [dm3] 2R_10649095_SNP [dm6]	C	T	4.592e^-4	0.996	NON_SYNONYMOUS_CODING CG12934 DOWNSTREAM Elp2
2R	2399709	2R_2399709_SNP [dm3] 2R_6512204_SNP [dm6]	A	G	4.608e^-4	0.996	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13928386	2R_13928386_SNP [dm3] 2R_18040881_SNP [dm6]	A	G	4.608e^-4	0.996	INTERGENIC
3L	9547680	3L_9547680_DEL [dm3] 3L_9554580_DEL [dm6]	TT	T	4.609e^-4	0.996	INTRON CG42673
2R	13930413	2R_13930413_SNP [dm3] 2R_18042908_SNP [dm6]	T	A	4.625e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
X	454054	X_454054_SNP [dm3] X_560021_SNP [dm6]	T	A	4.625e^-4	0.996	INTRON Appl
3L	17690389	3L_17690389_SNP [dm3] 3L_17697289_SNP [dm6]	T	G	4.630e^-4	0.996	INTRON Ccn
2R	17767144	2R_17767144_SNP [dm3] 2R_21879639_SNP [dm6]	T	A	4.643e^-4	0.996	INTRON Fili
2R	4934835	2R_4934835_SNP [dm3] 2R_9047330_SNP [dm6]	A	T	4.645e^-4	0.996	INTRON CG13743
2R	15996871	2R_15996871_SNP [dm3] 2R_20109366_SNP [dm6]	G	C	4.648e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15996881	2R_15996881_SNP [dm3] 2R_20109376_SNP [dm6]	T	C	4.648e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13930409	2R_13930409_SNP [dm3] 2R_18042904_SNP [dm6]	T	A	4.648e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
2R	13930410	2R_13930410_SNP [dm3] 2R_18042905_SNP [dm6]	A	T	4.648e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
2R	13930414	2R_13930414_SNP [dm3] 2R_18042909_SNP [dm6]	T	C	4.648e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
2R	19855649	2R_19855649_SNP [dm3] 2R_23968126_SNP [dm6]	A	T	4.658e^-4	0.996	UPSTREAM CG34213 DOWNSTREAM CG10904 INTRON or	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19855668	2R_19855668_SNP [dm3] 2R_23968145_SNP [dm6]	A	T	4.658e^-4	0.996	SPLICE_SITE_REGION or UPSTREAM CG34213 DOWNSTREAM CG10904 INTRON or	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20300780	3R_20300780_SNP [dm3] 3R_24475058_SNP [dm6]	G	A	4.664e^-4	0.996	INTERGENIC
2L	17026007	2L_17026007_SNP [dm3] 2L_17026007_SNP [dm6]	G	A	4.665e^-4	0.996	INTERGENIC
3L	15968356	3L_15968356_INS [dm3] 3L_15975256_INS [dm6]	T	TT	4.678e^-4	0.996	SPLICE_SITE_REGION brm UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
2L	11119028	2L_11119028_SNP [dm3] 2L_11119028_SNP [dm6]	C	T	4.719e^-4	0.996	NON_SYNONYMOUS_CODING CG6230	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5796584	3L_5796584_SNP [dm3] 3L_5803484_SNP [dm6]	C	T	4.720e^-4	0.996	UPSTREAM CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21896275	X_21896275_SNP [dm3] X_22494439_SNP [dm6]	G	T	4.725e^-4	0.996	INTRON l_1_G0196	transposable element FlyBase
X	5302929	X_5302929_SNP [dm3] X_5408896_SNP [dm6]	T	C	4.748e^-4	0.996	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3R	16184587	3R_16184587_SNP [dm3] 3R_20358865_SNP [dm6]	T	A	4.751e^-4	0.996	EXON CR45023
3L	2301678	3L_2301678_SNP [dm3] 3L_2301678_SNP [dm6]	T	A	4.756e^-4	0.996	DOWNSTREAM MsR2 INTERGENIC
3L	2301685	3L_2301685_SNP [dm3] 3L_2301685_SNP [dm6]	C	A	4.756e^-4	0.996	DOWNSTREAM MsR2 INTERGENIC
3L	2305422	3L_2305422_SNP [dm3] 3L_2305422_SNP [dm6]	C	T	4.756e^-4	0.996	INTERGENIC
3L	2306571	3L_2306571_SNP [dm3] 3L_2306571_SNP [dm6]	C	T	4.756e^-4	0.996	INTERGENIC
3L	2307604	3L_2307604_SNP [dm3] 3L_2307604_SNP [dm6]	A	C	4.756e^-4	0.996	INTERGENIC
2L	15138750	2L_15138750_SNP [dm3] 2L_15138750_SNP [dm6]	C	T	4.762e^-4	0.996	INTERGENIC
X	16724344	X_16724344_SNP [dm3] X_16830311_SNP [dm6]	A	T	4.764e^-4	0.996	INTRON CG13004
2L	12490616	2L_12490616_SNP [dm3] 2L_12490616_SNP [dm6]	A	T	4.775e^-4	0.996	INTRON bun
2R	8829963	2R_8829963_SNP [dm3] 2R_12942458_SNP [dm6]	T	A	4.780e^-4	0.996	INTRON Mdr49
2R	16559828	2R_16559828_INS [dm3] 2R_20672323_INS [dm6]	T	TTT	4.783e^-4	0.996	INTRON CG30152	TF binding site mE1_TFBS_sens
3L	18327562	3L_18327562_SNP [dm3] 3L_18334462_SNP [dm6]	T	C	4.792e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10748408	3L_10748408_SNP [dm3] 3L_10755308_SNP [dm6]	A	G	4.796e^-4	0.996	INTERGENIC
X	18226463	X_18226463_SNP [dm3] X_18332430_SNP [dm6]	A	T	4.799e^-4	0.996	INTRON CG6123	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18741475	3R_18741475_SNP [dm3] 3R_22915753_SNP [dm6]	C	G	4.800e^-4	0.996	INTRON klg
3L	4389122	3L_4389122_SNP [dm3] 3L_4389122_SNP [dm6]	T	C	4.816e^-4	0.996	INTRON slow
3R	19189485	3R_19189485_SNP [dm3] 3R_23363763_SNP [dm6]	A	C	4.825e^-4	0.996	UPSTREAM CG4408 INTERGENIC
2R	13808619	2R_13808619_SNP [dm3] 2R_17921114_SNP [dm6]	T	C	4.844e^-4	0.996	INTRON Elk
X	20466794	X_20466794_SNP [dm3] X_20595767_SNP [dm6]	A	G	4.847e^-4	0.996	INTRON RunxA
X	461825	X_461825_SNP [dm3] X_567792_SNP [dm6]	A	G	4.853e^-4	0.996	INTRON Appl
X	10783646	X_10783646_SNP [dm3] X_10889613_SNP [dm6]	A	T	4.859e^-4	0.996	INTRON Ork1
2L	5590469	2L_5590469_INS [dm3] 2L_5590469_INS [dm6]	G	GAG	4.861e^-4	0.996	INTERGENIC
3L	2400853	3L_2400853_SNP [dm3] 3L_2400853_SNP [dm6]	G	T	4.881e^-4	0.996	INTRON CG45186
2L	12602291	2L_12602291_SNP [dm3] 2L_12602291_SNP [dm6]	G	C	4.899e^-4	0.996	INTRON nub
2R	15870519	2R_15870519_SNP [dm3] 2R_19983014_SNP [dm6]	G	A	4.901e^-4	0.996	SYNONYMOUS_CODING CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	15876639	3L_15876639_SNP [dm3] 3L_15883539_SNP [dm6]	G	T	4.923e^-4	0.996	INTRON pHCl
2L	12808927	2L_12808927_SNP [dm3] 2L_12808927_SNP [dm6]	A	G	4.927e^-4	0.996	UPSTREAM CR43818 INTERGENIC
3L	7471017	3L_7471017_SNP [dm3] 3L_7477917_SNP [dm6]	T	C	4.929e^-4	0.996	INTERGENIC
3L	2898452	3L_2898452_SNP [dm3] 3L_2898452_SNP [dm6]	A	T	4.930e^-4	0.996	INTRON Shab
3R	20211758	3R_20211758_INS [dm3] 3R_24386036_INS [dm6]	T	TT	4.937e^-4	0.996	UPSTREAM CG17780 DOWNSTREAM CG5768 INTERGENIC
2L	19205182	2L_19205182_SNP [dm3] 2L_19205182_SNP [dm6]	C	G	4.950e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3210682	X_3210682_SNP [dm3] X_3316649_SNP [dm6]	T	A	4.974e^-4	0.996	UPSTREAM CG10793 INTRON dnc & 1 other
2R	3280655	2R_3280655_SNP [dm3] 2R_7393150_SNP [dm6]	A	G	4.977e^-4	0.996	UTR_5_PRIME Gr43a DOWNSTREAM CG1707
2R	7953806	2R_7953806_SNP [dm3] 2R_12066301_SNP [dm6]	T	C	4.978e^-4	0.996	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7953814	2R_7953814_SNP [dm3] 2R_12066309_SNP [dm6]	A	G	4.978e^-4	0.996	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3L	8838742	3L_8838742_SNP [dm3] 3L_8845642_SNP [dm6]	G	T	4.986e^-4	0.996	INTRON dally
2L	8097761	2L_8097761_SNP [dm3] 2L_8097761_SNP [dm6]	A	G	4.991e^-4	0.996	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13484462	3L_13484462_DEL [dm3] 3L_13491362_DEL [dm6]	GGA	G	4.999e^-4	0.996	INTRON Tgi
3L	7498960	3L_7498960_SNP [dm3] 3L_7505860_SNP [dm6]	C	G	5.005e^-4	0.996	SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
2R	11677723	2R_11677723_SNP [dm3] 2R_15790218_SNP [dm6]	A	T	5.006e^-4	0.996	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7179543	2L_7179543_SNP [dm3] 2L_7179543_SNP [dm6]	G	A	5.015e^-4	0.996	INTERGENIC
X	13300046	X_13300046_INS [dm3] X_13406013_INS [dm6]	T	TGTTTT	5.021e^-4	0.996	INTRON GstT4
3L	4389137	3L_4389137_SNP [dm3] 3L_4389137_SNP [dm6]	G	T	5.032e^-4	0.996	INTRON slow	TF binding site mE1_TFBS_sbb
X	10006388	X_10006388_SNP [dm3] X_10112355_SNP [dm6]	C	T	5.042e^-4	0.996	INTRON RhoU
3R	23487563	3R_23487563_SNP [dm3] 3R_27661841_SNP [dm6]	A	C	5.045e^-4	0.996	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3205567	X_3205567_SNP [dm3] X_3311534_SNP [dm6]	C	G	5.045e^-4	0.996	INTRON dnc
X	13741334	X_13741334_SNP [dm3] X_13847301_SNP [dm6]	C	T	5.045e^-4	0.996	UTR_3_PRIME mamo
3R	5895860	3R_5895860_SNP [dm3] 3R_10070138_SNP [dm6]	C	G	5.049e^-4	0.996	UPSTREAM nerfin-2 INTERGENIC
2L	14607426	2L_14607426_SNP [dm3] 2L_14607426_SNP [dm6]	G	A	5.049e^-4	0.996	INTRON osp
3R	18173568	3R_18173568_SNP [dm3] 3R_22347846_SNP [dm6]	A	G	5.058e^-4	0.996	INTERGENIC
2L	3765598	2L_3765598_SNP [dm3] 2L_3765598_SNP [dm6]	T	C	5.065e^-4	0.996	UPSTREAM CG43707 INTRON CG43707 & 1 other
3L	9312511	3L_9312511_SNP [dm3] 3L_9319411_SNP [dm6]	T	C	5.076e^-4	0.996	INTERGENIC
3R	16387753	3R_16387753_SNP [dm3] 3R_20562031_SNP [dm6]	C	T	5.082e^-4	0.996	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13726886	X_13726886_SNP [dm3] X_13832853_SNP [dm6]	C	T	5.085e^-4	0.996	INTRON AMPdeam
X	13726916	X_13726916_SNP [dm3] X_13832883_SNP [dm6]	A	C	5.085e^-4	0.996	INTRON AMPdeam
X	13726958	X_13726958_SNP [dm3] X_13832925_SNP [dm6]	C	T	5.085e^-4	0.996	SYNONYMOUS_CODING AMPdeam UTR_3_PRIME AMPdeam
3R	24275459	3R_24275459_SNP [dm3] 3R_28449737_SNP [dm6]	T	A	5.086e^-4	0.996	INTRON beat-VI
2L	13875988	2L_13875988_INS [dm3] 2L_13875988_INS [dm6]	A	AGTTCTCATATATGGTA...	5.092e^-4	0.996	INTRON CenG1A
X	8199628	X_8199628_SNP [dm3] X_8305595_SNP [dm6]	A	G	5.106e^-4	0.996	INTRON nAChRalpha3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14268516	2R_14268516_SNP [dm3] 2R_18381011_SNP [dm6]	T	A	5.125e^-4	0.996	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8591071	3L_8591071_SNP [dm3] 3L_8597971_SNP [dm6]	C	T	5.134e^-4	0.996	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_cad
3R	12250640	3R_12250640_SNP [dm3] 3R_16424918_SNP [dm6]	C	A	5.161e^-4	0.996	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3R	6113572	3R_6113572_SNP [dm3] 3R_10287850_SNP [dm6]	A	C	5.166e^-4	0.996	INTRON CG43143
3R	24133728	3R_24133728_SNP [dm3] 3R_28308006_SNP [dm6]	A	G	5.168e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8838767	3L_8838767_SNP [dm3] 3L_8845667_SNP [dm6]	T	A	5.176e^-4	0.996	INTRON dally
2R	19479734	2R_19479734_SNP [dm3] 2R_23592211_SNP [dm6]	G	T	5.184e^-4	0.996	INTRON apt
2R	2403923	2R_2403923_SNP [dm3] 2R_6516418_SNP [dm6]	C	G	5.185e^-4	0.996	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3342442	2L_3342442_SNP [dm3] 2L_3342442_SNP [dm6]	G	A	5.200e^-4	0.996	INTRON E23
2L	4139499	2L_4139499_SNP [dm3] 2L_4139499_SNP [dm6]	C	A	5.209e^-4	0.996	INTERGENIC
3L	7271827	3L_7271827_SNP [dm3] 3L_7278727_SNP [dm6]	T	A	5.216e^-4	0.996	INTRON unc-13-4A
2R	11158875	2R_11158875_SNP [dm3] 2R_15271370_SNP [dm6]	C	T	5.230e^-4	0.996	INTRON Trpm
2R	19313138	2R_19313138_SNP [dm3] 2R_23425615_SNP [dm6]	T	A	5.239e^-4	0.996	INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
3L	14498737	3L_14498737_SNP [dm3] 3L_14505637_SNP [dm6]	T	C	5.280e^-4	0.996	INTRON bbg
X	18047934	X_18047934_SNP [dm3] X_18153901_SNP [dm6]	G	T	5.282e^-4	0.996	INTERGENIC
3R	20211268	3R_20211268_INS [dm3] 3R_24385546_INS [dm6]	T	TTGTAG	5.282e^-4	0.996	UPSTREAM CG17780 DOWNSTREAM CG5768 INTERGENIC
2R	6889919	2R_6889919_SNP [dm3] 2R_11002414_SNP [dm6]	T	C	5.290e^-4	0.996	INTRON luna
2R	16306809	2R_16306809_SNP [dm3] 2R_20419304_SNP [dm6]	G	A	5.296e^-4	0.996	INTERGENIC
2R	16306810	2R_16306810_SNP [dm3] 2R_20419305_SNP [dm6]	C	A	5.296e^-4	0.996	INTERGENIC
2L	16996466	2L_16996466_SNP [dm3] 2L_16996466_SNP [dm6]	C	T	5.300e^-4	0.996	INTERGENIC
3R	17167517	3R_17167517_INS [dm3] 3R_21341795_INS [dm6]	C	CC	5.310e^-4	0.996	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14671714	2L_14671714_SNP [dm3] 2L_14671714_SNP [dm6]	T	G	5.312e^-4	0.996	INTRON osp
X	16315466	X_16315466_SNP [dm3] X_16421433_SNP [dm6]	A	G	5.313e^-4	0.996	INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16428583	3L_16428583_SNP [dm3] 3L_16435483_SNP [dm6]	C	T	5.322e^-4	0.996	INTRON CG33158 & 1 other
3L	16906049	3L_16906049_SNP [dm3] 3L_16912949_SNP [dm6]	G	A	5.324e^-4	0.996	INTRON Lmpt
X	417648	X_417648_SNP [dm3] X_523615_SNP [dm6]	G	C	5.325e^-4	0.996	UPSTREAM elav INTRON arg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_sens mE1_TFBS_Trl
2R	17767555	2R_17767555_SNP [dm3] 2R_21880050_SNP [dm6]	T	A	5.330e^-4	0.996	INTRON Fili
3L	4436331	3L_4436331_SNP [dm3] 3L_4436331_SNP [dm6]	G	T	5.333e^-4	0.996	UPSTREAM CG15021 DOWNSTREAM nAChRbeta1 INTERGENIC
3L	4436578	3L_4436578_SNP [dm3] 3L_4436578_SNP [dm6]	G	C	5.333e^-4	0.996	UPSTREAM CG15021 DOWNSTREAM nAChRbeta1 INTERGENIC
X	3856673	X_3856673_SNP [dm3] X_3962640_SNP [dm6]	T	G	5.337e^-4	0.996	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA
3L	12151537	3L_12151537_SNP [dm3] 3L_12158437_SNP [dm6]	G	T	5.346e^-4	0.996	INTRON CG9760	TF binding site mE1_TFBS_cad
3R	23522164	3R_23522164_SNP [dm3] 3R_27696442_SNP [dm6]	C	T	5.360e^-4	0.996	SYNONYMOUS_CODING CG43320 DOWNSTREAM ALiX
3L	6077379	3L_6077379_SNP [dm3] 3L_6084279_SNP [dm6]	C	A	5.362e^-4	0.996	INTRON CG13293
2R	7260619	2R_7260619_DEL [dm3] 2R_11373114_DEL [dm6]	GGTACTTAGATTG...	G	5.367e^-4	0.996	UPSTREAM CG13203 INTERGENIC
2R	17361237	2R_17361237_SNP [dm3] 2R_21473732_SNP [dm6]	G	T	5.376e^-4	0.996	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25525976	3R_25525976_SNP [dm3] 3R_29700254_SNP [dm6]	G	A	5.379e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16737151	3L_16737151_SNP [dm3] 3L_16744051_SNP [dm6]	G	A	5.384e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9189211	2L_9189211_SNP [dm3] 2L_9189211_SNP [dm6]	G	C	5.384e^-4	0.996	INTRON tai
2L	17723044	2L_17723044_SNP [dm3] 2L_17723044_SNP [dm6]	A	G	5.389e^-4	0.996	INTRON CadN	TF binding site BDTNP1_TFBS_dl
2L	17725668	2L_17725668_SNP [dm3] 2L_17725668_SNP [dm6]	A	T	5.389e^-4	0.996	INTRON CadN
2L	21119601	2L_21119601_SNP [dm3] 2L_21119601_SNP [dm6]	A	T	5.389e^-4	0.996	INTRON Nhe2
2L	21120229	2L_21120229_SNP [dm3] 2L_21120229_SNP [dm6]	T	C	5.389e^-4	0.996	INTRON Nhe2
2L	21121067	2L_21121067_SNP [dm3] 2L_21121067_SNP [dm6]	C	G	5.389e^-4	0.996	INTRON Nhe2
2L	21142327	2L_21142327_SNP [dm3] 2L_21142327_SNP [dm6]	C	T	5.389e^-4	0.996	UTR_5_PRIME Dap160 UPSTREAM CG9253	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	21143993	2L_21143993_SNP [dm3] 2L_21143993_SNP [dm6]	C	T	5.389e^-4	0.996	DOWNSTREAM snoRNA:Me18S-A469 INTRON CG9253	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	21155417	2L_21155417_SNP [dm3] 2L_21155417_SNP [dm6]	A	C	5.389e^-4	0.996	UPSTREAM Mpp6 INTRON E2f2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	21157830	2L_21157830_SNP [dm3] 2L_21157830_SNP [dm6]	A	T	5.389e^-4	0.996	NON_SYNONYMOUS_CODING CG9249 DOWNSTREAM Mpp6	TF binding site mE1_TFBS_sens
2L	21160499	2L_21160499_SNP [dm3] 2L_21160499_SNP [dm6]	T	G	5.389e^-4	0.996	NON_SYNONYMOUS_CODING CG9248 DOWNSTREAM Nbr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	461676	X_461676_SNP [dm3] X_567643_SNP [dm6]	T	A	5.394e^-4	0.996	INTRON Appl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1291492	2L_1291492_SNP [dm3] 2L_1291492_SNP [dm6]	G	A	5.406e^-4	0.996	INTRON robo3
2R	19612809	2R_19612809_SNP [dm3] 2R_23725286_SNP [dm6]	G	T	5.416e^-4	0.996	INTRON Sesn
X	21933008	X_21933008_SNP [dm3] X_22531172_SNP [dm6]	C	T	5.450e^-4	0.996	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_sens
3L	5858021	3L_5858021_SNP [dm3] 3L_5864921_SNP [dm6]	C	T	5.470e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	746755	2L_746755_SNP [dm3] 2L_746755_SNP [dm6]	A	G	5.488e^-4	0.996	INTERGENIC
X	418177	X_418177_DEL [dm3] X_524144_DEL [dm6]	ACCGAG	A	5.493e^-4	0.996	UPSTREAM elav INTRON arg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	755437	2L_755437_SNP [dm3] 2L_755437_SNP [dm6]	T	G	5.494e^-4	0.996	INTRON GABA-B-R3
2R	6233871	2R_6233871_SNP [dm3] 2R_10346366_SNP [dm6]	A	C	5.496e^-4	0.996	INTRON CG42732
2L	755550	2L_755550_SNP [dm3] 2L_755550_SNP [dm6]	G	C	5.499e^-4	0.996	INTRON GABA-B-R3
2R	6680597	2R_6680597_SNP [dm3] 2R_10793092_SNP [dm6]	C	T	5.503e^-4	0.996	SYNONYMOUS_CODING mthl13 INTRON CG33144
2L	11524462	2L_11524462_SNP [dm3] 2L_11524462_SNP [dm6]	G	A	5.515e^-4	0.996	SYNONYMOUS_CODING CG31705	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17503515	2L_17503515_INS [dm3] 2L_17503515_INS [dm6]	A	GATGAACT	5.516e^-4	0.996	INTRON Dhc36C
2L	17503517	2L_17503517_SNP [dm3] 2L_17503517_SNP [dm6]	A	G	5.516e^-4	0.996	INTRON Dhc36C
3R	23343354	3R_23343354_SNP [dm3] 3R_27517632_SNP [dm6]	C	T	5.522e^-4	0.996	UPSTREAM CG13972 INTERGENIC
2L	14400068	2L_14400068_SNP [dm3] 2L_14400068_SNP [dm6]	C	A	5.561e^-4	0.996	INTRON elB
2L	8189895	2L_8189895_INS [dm3] 2L_8189895_INS [dm6]	T	TAAAT	5.562e^-4	0.996	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2R	4447954	2R_4447954_SNP [dm3] 2R_8560449_SNP [dm6]	C	A	5.563e^-4	0.996	INTERGENIC
3L	2107963	3L_2107963_SNP [dm3] 3L_2107963_SNP [dm6]	C	G	5.564e^-4	0.996	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19237076	X_19237076_INS [dm3] X_19343043_INS [dm6]	T	TTATGAACCGAAGATAT...	5.569e^-4	0.996	INTRON nAChRalpha7
X	19237116	X_19237116_SNP [dm3] X_19343083_SNP [dm6]	C	A	5.569e^-4	0.996	INTRON nAChRalpha7
2L	19205582	2L_19205582_INS [dm3] 2L_19205582_INS [dm6]	A	AA	5.574e^-4	0.996	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7490376	3L_7490376_SNP [dm3] 3L_7497276_SNP [dm6]	G	A	5.580e^-4	0.996	UTR_3_PRIME CG8539
3L	7490386	3L_7490386_SNP [dm3] 3L_7497286_SNP [dm6]	T	C	5.580e^-4	0.996	UTR_3_PRIME CG8539
X	4422990	X_4422990_SNP [dm3] X_4528957_SNP [dm6]	T	C	5.582e^-4	0.996	INTRON CR32773
2R	7812946	2R_7812946_SNP [dm3] 2R_11925441_SNP [dm6]	A	C	5.595e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_run
3R	10873048	3R_10873048_SNP [dm3] 3R_15047326_SNP [dm6]	C	T	5.605e^-4	0.996	INTERGENIC
3L	2578272	3L_2578272_SNP [dm3] 3L_2578272_SNP [dm6]	C	T	5.611e^-4	0.996	INTRON msn
3R	13750222	3R_13750222_SNP [dm3] 3R_17924500_SNP [dm6]	C	T	5.616e^-4	0.996	INTRON cpo
X	456726	X_456726_SNP [dm3] X_562693_SNP [dm6]	T	G	5.628e^-4	0.996	INTRON Appl
3L	2420674	3L_2420674_SNP [dm3] 3L_2420674_SNP [dm6]	A	G	5.629e^-4	0.996	INTRON CG45186
3R	23384591	3R_23384591_SNP [dm3] 3R_27558869_SNP [dm6]	G	A	5.631e^-4	0.996	UTR_5_PRIME Klp98A DOWNSTREAM CG5646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	10966261	2R_10966261_SNP [dm3] 2R_15078756_SNP [dm6]	T	A	5.636e^-4	0.996	INTERGENIC
3R	6113635	3R_6113635_SNP [dm3] 3R_10287913_SNP [dm6]	G	T	5.641e^-4	0.996	INTRON CG43143
3L	7451153	3L_7451153_SNP [dm3] 3L_7458053_SNP [dm6]	A	T	5.642e^-4	0.996	INTRON ppk26
X	18983922	X_18983922_SNP [dm3] X_19089889_SNP [dm6]	A	T	5.649e^-4	0.996	INTERGENIC
X	18983957	X_18983957_SNP [dm3] X_19089924_SNP [dm6]	G	T	5.649e^-4	0.996	INTERGENIC
2R	16677144	2R_16677144_SNP [dm3] 2R_20789639_SNP [dm6]	G	T	5.654e^-4	0.996	NON_SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2L	2419645	2L_2419645_SNP [dm3] 2L_2419645_SNP [dm6]	T	C	5.654e^-4	0.996	NON_SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10079564	X_10079564_SNP [dm3] X_10185531_SNP [dm6]	T	C	5.664e^-4	0.996	INTRON CG43902 & 1 other
X	8702483	X_8702483_SNP [dm3] X_8808450_SNP [dm6]	A	C	5.666e^-4	0.996	INTERGENIC
3R	18450015	3R_18450015_SNP [dm3] 3R_22624293_SNP [dm6]	G	A	5.669e^-4	0.996	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8189890	2L_8189890_SNP [dm3] 2L_8189890_SNP [dm6]	T	A	5.689e^-4	0.996	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2R	7060512	2R_7060512_SNP [dm3] 2R_11173007_SNP [dm6]	T	A	5.696e^-4	0.996	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	3948365	2R_3948365_SNP [dm3] 2R_8060860_SNP [dm6]	C	T	5.708e^-4	0.996	INTRON CG12769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7104664	3L_7104664_INS [dm3] 3L_7111564_INS [dm6]	A	ACCCTA	5.711e^-4	0.996	INTRON form3
3L	9322350	3L_9322350_SNP [dm3] 3L_9329250_SNP [dm6]	A	G	5.713e^-4	0.996	INTERGENIC
2L	11106974	2L_11106974_SNP [dm3] 2L_11106974_SNP [dm6]	G	A	5.715e^-4	0.996	UTR_5_PRIME l_2_gd1 UPSTREAM Reps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17255628	2R_17255628_SNP [dm3] 2R_21368123_SNP [dm6]	T	G	5.721e^-4	0.996	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3720208	3L_3720208_SNP [dm3] 3L_3720208_SNP [dm6]	G	C	5.727e^-4	0.996	INTRON CG32264
2L	14346775	2L_14346775_SNP [dm3] 2L_14346775_SNP [dm6]	G	T	5.731e^-4	0.996	UPSTREAM Send2 DOWNSTREAM CG33090 & 1 other INTERGENIC
2L	14346799	2L_14346799_SNP [dm3] 2L_14346799_SNP [dm6]	T	C	5.731e^-4	0.996	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2R	16917991	2R_16917991_SNP [dm3] 2R_21030486_SNP [dm6]	G	T	5.738e^-4	0.996	UPSTREAM CR45148 INTERGENIC
3R	16604485	3R_16604485_DEL [dm3] 3R_20778763_DEL [dm6]	TGT	T	5.740e^-4	0.996	UPSTREAM Syp INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12846459	3L_12846459_SNP [dm3] 3L_12853359_SNP [dm6]	T	A	5.782e^-4	0.996	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3R	20393676	3R_20393676_SNP [dm3] 3R_24567954_SNP [dm6]	A	G	5.782e^-4	0.996	INTRON CG13624
X	12027348	X_12027348_SNP [dm3] X_12133315_SNP [dm6]	T	C	5.795e^-4	0.996	INTRON Ten-a
2L	11939564	2L_11939564_SNP [dm3] 2L_11939564_SNP [dm6]	G	A	5.815e^-4	0.996	DOWNSTREAM Or33c INTERGENIC
2R	13619138	2R_13619138_SNP [dm3] 2R_17731633_SNP [dm6]	A	G	5.825e^-4	0.996	SYNONYMOUS_CODING CG4984 UTR_3_PRIME CG4975	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15996755	2R_15996755_SNP [dm3] 2R_20109250_SNP [dm6]	T	C	5.826e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15996766	2R_15996766_SNP [dm3] 2R_20109261_SNP [dm6]	T	C	5.826e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11226463	X_11226463_SNP [dm3] X_11332430_SNP [dm6]	C	T	5.840e^-4	0.996	SYNONYMOUS_CODING CG1657	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5072342	X_5072342_SNP [dm3] X_5178309_SNP [dm6]	A	G	5.841e^-4	0.996	INTRON rg & 1 other
X	17606680	X_17606680_SNP [dm3] X_17712647_SNP [dm6]	A	T	5.855e^-4	0.996	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26540629	3R_26540629_SNP [dm3] 3R_30714907_SNP [dm6]	G	A	5.860e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21926793	3R_21926793_SNP [dm3] 3R_26101071_SNP [dm6]	T	C	5.870e^-4	0.996	INTERGENIC
3R	26366128	3R_26366128_SNP [dm3] 3R_30540406_SNP [dm6]	T	C	5.872e^-4	0.996	INTRON tmod
2R	7060832	2R_7060832_SNP [dm3] 2R_11173327_SNP [dm6]	C	T	5.872e^-4	0.996	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	12388307	2L_12388307_DEL [dm3] 2L_12388307_DEL [dm6]	TT	T	5.881e^-4	0.996	INTRON bru-2
2R	13527415	2R_13527415_SNP [dm3] 2R_17639910_SNP [dm6]	C	T	5.884e^-4	0.996	UPSTREAM CG10936 INTERGENIC
2R	4961588	2R_4961588_SNP [dm3] 2R_9074083_SNP [dm6]	C	A	5.884e^-4	0.996	SYNONYMOUS_CODING ana
3R	21245405	3R_21245405_SNP [dm3] 3R_25419683_SNP [dm6]	C	T	5.891e^-4	0.996	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	6103659	X_6103659_SNP [dm3] X_6209626_SNP [dm6]	A	G	5.900e^-4	0.996	INTERGENIC
X	16410687	X_16410687_SNP [dm3] X_16516654_SNP [dm6]	T	G	5.915e^-4	0.996	INTRON para
X	16410689	X_16410689_SNP [dm3] X_16516656_SNP [dm6]	T	A	5.915e^-4	0.996	INTRON para
2R	13928393	2R_13928393_INS [dm3] 2R_18040888_INS [dm6]	T	TCTT	5.936e^-4	0.996	INTERGENIC
2L	3627364	2L_3627364_SNP [dm3] 2L_3627364_SNP [dm6]	G	T	5.941e^-4	0.996	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
2R	8921194	2R_8921194_SNP [dm3] 2R_13033689_SNP [dm6]	T	G	5.948e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10954446	2R_10954446_SNP [dm3] 2R_15066941_SNP [dm6]	T	A	5.950e^-4	0.996	INTERGENIC
2L	12273422	2L_12273422_SNP [dm3] 2L_12273422_SNP [dm6]	A	G	5.960e^-4	0.996	INTRON aret
3R	26421068	3R_26421068_SNP [dm3] 3R_30595346_SNP [dm6]	C	G	5.962e^-4	0.996	INTRON CG2246
3R	26421089	3R_26421089_SNP [dm3] 3R_30595367_SNP [dm6]	A	G	5.962e^-4	0.996	INTRON CG2246
3L	13992209	3L_13992209_SNP [dm3] 3L_13999109_SNP [dm6]	T	C	5.964e^-4	0.996	NON_SYNONYMOUS_CODING CG17359 DOWNSTREAM CG8783
2R	19216609	2R_19216609_SNP [dm3] 2R_23329086_SNP [dm6]	G	A	5.976e^-4	0.996	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25213578	3R_25213578_SNP [dm3] 3R_29387856_SNP [dm6]	T	C	5.987e^-4	0.996	INTRON Ptp99A
2R	10214982	2R_10214982_SNP [dm3] 2R_14327477_SNP [dm6]	A	G	6.001e^-4	0.996	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10214987	2R_10214987_SNP [dm3] 2R_14327482_SNP [dm6]	T	G	6.001e^-4	0.996	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15955029	2L_15955029_SNP [dm3] 2L_15955029_SNP [dm6]	C	G	6.023e^-4	0.996	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
3L	21249328	3L_21249328_SNP [dm3] 3L_21256228_SNP [dm6]	A	G	6.032e^-4	0.996	INTRON Eip78C
3R	18177089	3R_18177089_SNP [dm3] 3R_22351367_SNP [dm6]	C	T	6.033e^-4	0.996	UPSTREAM rdhB INTERGENIC
3R	18177102	3R_18177102_SNP [dm3] 3R_22351380_SNP [dm6]	G	A	6.033e^-4	0.996	UPSTREAM rdhB INTERGENIC
2R	15870575	2R_15870575_SNP [dm3] 2R_19983070_SNP [dm6]	A	T	6.039e^-4	0.996	INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	15575148	X_15575148_SNP [dm3] X_15681115_SNP [dm6]	A	T	6.058e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10338901	X_10338901_SNP [dm3] X_10444868_SNP [dm6]	A	C	6.065e^-4	0.996	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2R	7953771	2R_7953771_SNP [dm3] 2R_12066266_SNP [dm6]	G	C	6.082e^-4	0.996	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19976557	2R_19976557_SNP [dm3] 2R_24089034_SNP [dm6]	A	T	6.091e^-4	0.996	SYNONYMOUS_CODING snama
2R	13930419	2R_13930419_MNP [dm3] 2R_18042914_MNP [dm6]	CTA	GAG	6.092e^-4	0.996	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
2L	16729724	2L_16729724_SNP [dm3] 2L_16729724_SNP [dm6]	T	A	6.096e^-4	0.996	UPSTREAM CG31812 & 1 other DOWNSTREAM CG17996 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx transposable element FlyBase
2L	752683	2L_752683_SNP [dm3] 2L_752683_SNP [dm6]	C	G	6.104e^-4	0.996	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
2L	14045517	2L_14045517_SNP [dm3] 2L_14045517_SNP [dm6]	G	C	6.115e^-4	0.996	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
X	19140322	X_19140322_SNP [dm3] X_19246289_SNP [dm6]	G	A	6.119e^-4	0.996	SYNONYMOUS_CODING CG7992	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	8240691	3L_8240691_INS [dm3] 3L_8247591_INS [dm6]	A	AAAGA	6.120e^-4	0.996	INTRON Dscam4
3L	10281782	3L_10281782_DEL [dm3] 3L_10288682_DEL [dm6]	ACTTGACGAGC...	TA	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281803	3L_10281803_SNP [dm3] 3L_10288703_SNP [dm6]	A	T	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281967	3L_10281967_SNP [dm3] 3L_10288867_SNP [dm6]	T	A	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281969	3L_10281969_SNP [dm3] 3L_10288869_SNP [dm6]	T	C	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281970	3L_10281970_SNP [dm3] 3L_10288870_SNP [dm6]	T	C	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281972	3L_10281972_DEL [dm3] 3L_10288872_DEL [dm6]	GTTGTT	TCA	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281980	3L_10281980_SNP [dm3] 3L_10288880_SNP [dm6]	T	G	6.128e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1459114	2L_1459114_SNP [dm3] 2L_1459114_SNP [dm6]	T	G	6.130e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9629520	2R_9629520_SNP [dm3] 2R_13742015_SNP [dm6]	T	G	6.134e^-4	0.996	INTRON fas
2R	10954424	2R_10954424_SNP [dm3] 2R_15066919_SNP [dm6]	C	G	6.142e^-4	0.996	INTERGENIC
2L	16413270	2L_16413270_SNP [dm3] 2L_16413270_SNP [dm6]	T	A	6.146e^-4	0.996	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	14248075	2L_14248075_DEL [dm3] 2L_14248075_DEL [dm6]	GTATA	T	6.147e^-4	0.996	INTERGENIC
2R	17968626	2R_17968626_SNP [dm3] 2R_22081121_SNP [dm6]	A	G	6.167e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968661	2R_17968661_SNP [dm3] 2R_22081156_SNP [dm6]	A	T	6.167e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	461647	X_461647_SNP [dm3] X_567614_SNP [dm6]	T	A	6.168e^-4	0.996	INTRON Appl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	467017	X_467017_SNP [dm3] X_572984_SNP [dm6]	T	C	6.168e^-4	0.996	INTRON Appl
3L	21333764	3L_21333764_SNP [dm3] 3L_21340664_SNP [dm6]	C	A	6.184e^-4	0.996	SYNONYMOUS_CODING CG7324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4389064	3L_4389064_SNP [dm3] 3L_4389064_SNP [dm6]	C	A	6.188e^-4	0.996	INTRON slow
2R	16961874	2R_16961874_SNP [dm3] 2R_21074369_SNP [dm6]	G	A	6.190e^-4	0.996	INTRON Treh
2R	16965714	2R_16965714_SNP [dm3] 2R_21078209_SNP [dm6]	C	G	6.190e^-4	0.996	INTRON Treh
3L	1456943	3L_1456943_SNP [dm3] 3L_1456943_SNP [dm6]	A	G	6.193e^-4	0.996	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6113516	3R_6113516_SNP [dm3] 3R_10287794_SNP [dm6]	G	A	6.194e^-4	0.996	INTRON CG43143
2R	7189779	2R_7189779_SNP [dm3] 2R_11302274_SNP [dm6]	G	A	6.194e^-4	0.996	SYNONYMOUS_CODING Obp47b UTR_5_PRIME CG7741	TF binding site BDTNP1_TFBS_dl
3R	26852583	3R_26852583_SNP [dm3] 3R_31026861_SNP [dm6]	G	T	6.195e^-4	0.996	INTERGENIC
2L	13787995	2L_13787995_SNP [dm3] 2L_13787995_SNP [dm6]	C	T	6.199e^-4	0.996	NON_SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
2L	2419710	2L_2419710_DEL [dm3] 2L_2419710_DEL [dm6]	TG	A	6.200e^-4	0.996	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3566995	2R_3566995_SNP [dm3] 2R_7679490_SNP [dm6]	T	A	6.216e^-4	0.996	SYNONYMOUS_CODING CG1399
3R	14673888	3R_14673888_SNP [dm3] 3R_18848166_SNP [dm6]	C	A	6.232e^-4	0.996	NON_SYNONYMOUS_CODING CG18208	TF binding site mE1_TFBS_cad
X	11227413	X_11227413_SNP [dm3] X_11333380_SNP [dm6]	A	C	6.232e^-4	0.996	DOWNSTREAM Kap3 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7503748	3L_7503748_SNP [dm3] 3L_7510648_SNP [dm6]	G	T	6.235e^-4	0.996	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	18177236	X_18177236_SNP [dm3] X_18283203_SNP [dm6]	G	A	6.238e^-4	0.996	INTRON upd3	TF binding site BDTNP1_TFBS_dl
3L	2278041	3L_2278041_SNP [dm3] 3L_2278041_SNP [dm6]	G	T	6.243e^-4	0.996	DOWNSTREAM yellow-g2 INTERGENIC
3R	10081202	3R_10081202_SNP [dm3] 3R_14255480_SNP [dm6]	A	C	6.260e^-4	0.996	UPSTREAM CG43179 INTRON Aats-met
3R	20300669	3R_20300669_SNP [dm3] 3R_24474947_SNP [dm6]	A	G	6.262e^-4	0.996	INTERGENIC
2R	5249663	2R_5249663_SNP [dm3] 2R_9362158_SNP [dm6]	T	C	6.266e^-4	0.996	DOWNSTREAM CG12158 INTRON CG13954	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	16967221	2R_16967221_INS [dm3] 2R_21079716_INS [dm6]	A	AGGCAAATAACAAATTAAGA...	6.272e^-4	0.996	UPSTREAM Treh INTRON Treh
2R	11058787	2R_11058787_SNP [dm3] 2R_15171282_SNP [dm6]	A	G	6.274e^-4	0.996	INTRON igl
2L	21200944	2L_21200944_SNP [dm3] 2L_21200944_SNP [dm6]	C	A	6.276e^-4	0.996	UPSTREAM CG31624 DOWNSTREAM CG31988 INTERGENIC	transposable element FlyBase
3L	7451137	3L_7451137_INS [dm3] 3L_7458037_INS [dm6]	A	TG	6.281e^-4	0.996	INTRON ppk26
2L	14590487	2L_14590487_SNP [dm3] 2L_14590487_SNP [dm6]	T	C	6.304e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14604808	2L_14604808_SNP [dm3] 2L_14604808_SNP [dm6]	A	G	6.304e^-4	0.996	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10248736	2L_10248736_SNP [dm3] 2L_10248736_SNP [dm6]	A	T	6.310e^-4	0.996	INTRON bsk	TF binding site BDTNP1_TFBS_dl
3R	25296602	3R_25296602_SNP [dm3] 3R_29470880_SNP [dm6]	G	A	6.317e^-4	0.996	INTRON Ptp99A
3L	2499070	3L_2499070_SNP [dm3] 3L_2499070_SNP [dm6]	G	C	6.322e^-4	0.996	UTR_3_PRIME CG45186 DOWNSTREAM CG16758	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5921517	X_5921517_SNP [dm3] X_6027484_SNP [dm6]	A	T	6.324e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8838741	3L_8838741_SNP [dm3] 3L_8845641_SNP [dm6]	G	T	6.336e^-4	0.996	INTRON dally
2L	1237417	2L_1237417_SNP [dm3] 2L_1237417_SNP [dm6]	A	T	6.339e^-4	0.996	INTERGENIC
2R	17126021	2R_17126021_SNP [dm3] 2R_21238516_SNP [dm6]	C	G	6.341e^-4	0.996	INTRON ASPP
2R	10218125	2R_10218125_SNP [dm3] 2R_14330620_SNP [dm6]	G	C	6.347e^-4	0.996	INTRON Shroom
2L	3866758	2L_3866758_SNP [dm3] 2L_3866758_SNP [dm6]	G	A	6.350e^-4	0.996	SYNONYMOUS_CODING CG3964 UPSTREAM Cep97	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19219286	2L_19219286_SNP [dm3] 2L_19219286_SNP [dm6]	A	G	6.373e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	6406628	X_6406628_SNP [dm3] X_6512595_SNP [dm6]	A	G	6.374e^-4	0.996	INTRON CG42340
X	18047960	X_18047960_SNP [dm3] X_18153927_SNP [dm6]	C	T	6.378e^-4	0.996	INTERGENIC
2R	17593956	2R_17593956_SNP [dm3] 2R_21706451_SNP [dm6]	G	A	6.382e^-4	0.996	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18500508	3R_18500508_SNP [dm3] 3R_22674786_SNP [dm6]	A	G	6.405e^-4	0.996	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	1382719	2R_1382719_SNP [dm3] 2R_5495214_SNP [dm6]	T	A	6.406e^-4	0.996	SYNONYMOUS_CODING CG30440	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3720234	3L_3720234_SNP [dm3] 3L_3720234_SNP [dm6]	G	T	6.408e^-4	0.996	INTRON CG32264
2R	6829367	2R_6829367_INS [dm3] 2R_10941862_INS [dm6]	T	TTAATTTTACGA...	6.413e^-4	0.996	UPSTREAM Spn47C INTERGENIC
2L	11065562	2L_11065562_INS [dm3] 2L_11065562_INS [dm6]	A	ACAGGGA	6.425e^-4	0.996	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11065673	2L_11065673_SNP [dm3] 2L_11065673_SNP [dm6]	C	T	6.425e^-4	0.996	INTRON Samuel	TF binding site BDTNP1_TFBS_Med
3L	5682891	3L_5682891_SNP [dm3] 3L_5689791_SNP [dm6]	C	T	6.427e^-4	0.996	INTRON sif
2L	19227555	2L_19227555_SNP [dm3] 2L_19227555_SNP [dm6]	G	T	6.429e^-4	0.996	INTERGENIC
3L	3147031	3L_3147031_SNP [dm3] 3L_3147031_SNP [dm6]	C	T	6.443e^-4	0.996	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14003393	3R_14003393_SNP [dm3] 3R_18177671_SNP [dm6]	C	T	6.448e^-4	0.996	DOWNSTREAM PP2A-B' INTRON PP2A-B'
2R	2131756	2R_2131756_SNP [dm3] 2R_6244251_SNP [dm6]	G	A	6.450e^-4	0.996	INTRON Pld	transposable element FlyBase
2L	16450068	2L_16450068_SNP [dm3] 2L_16450068_SNP [dm6]	C	T	6.450e^-4	0.996	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	7531414	2L_7531414_SNP [dm3] 2L_7531414_SNP [dm6]	G	A	6.454e^-4	0.996	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9898303	3L_9898303_SNP [dm3] 3L_9905203_SNP [dm6]	G	C	6.455e^-4	0.996	INTERGENIC
3R	3165659	3R_3165659_SNP [dm3] 3R_7339937_SNP [dm6]	A	G	6.459e^-4	0.996	INTERGENIC
2L	21195929	2L_21195929_SNP [dm3] 2L_21195929_SNP [dm6]	C	T	6.461e^-4	0.996	INTRON Ret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11226295	X_11226295_SNP [dm3] X_11332262_SNP [dm6]	T	C	6.472e^-4	0.996	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11226321	X_11226321_SNP [dm3] X_11332288_SNP [dm6]	T	C	6.472e^-4	0.996	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11226323	X_11226323_SNP [dm3] X_11332290_SNP [dm6]	C	T	6.472e^-4	0.996	SPLICE_SITE_REGION CG1657 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14080784	2L_14080784_SNP [dm3] 2L_14080784_SNP [dm6]	A	G	6.475e^-4	0.996	INTRON nAChRalpha5
2R	4933512	2R_4933512_SNP [dm3] 2R_9046007_SNP [dm6]	C	T	6.489e^-4	0.996	UTR_3_PRIME CG13743
3L	4002409	3L_4002409_SNP [dm3] 3L_4002409_SNP [dm6]	C	T	6.492e^-4	0.996	INTERGENIC
3L	16737149	3L_16737149_SNP [dm3] 3L_16744049_SNP [dm6]	T	A	6.506e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	13277314	2L_13277314_SNP [dm3] 2L_13277314_SNP [dm6]	C	A	6.508e^-4	0.996	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad
3L	4239462	3L_4239462_SNP [dm3] 3L_4239462_SNP [dm6]	A	C	6.526e^-4	0.996	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15815620	3R_15815620_SNP [dm3] 3R_19989898_SNP [dm6]	G	T	6.554e^-4	0.996	INTRON Hs6st
2L	14207130	2L_14207130_SNP [dm3] 2L_14207130_SNP [dm6]	G	A	6.561e^-4	0.996	INTRON Dyrk2
2L	4154148	2L_4154148_SNP [dm3] 2L_4154148_SNP [dm6]	G	C	6.561e^-4	0.996	INTERGENIC
X	18793573	X_18793573_SNP [dm3] X_18899540_SNP [dm6]	T	A	6.561e^-4	0.996	UPSTREAM CG7378 INTERGENIC
X	18793595	X_18793595_SNP [dm3] X_18899562_SNP [dm6]	A	G	6.561e^-4	0.996	UPSTREAM CG7378 INTERGENIC
2R	17388188	2R_17388188_SNP [dm3] 2R_21500683_SNP [dm6]	G	A	6.564e^-4	0.996	NON_SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
X	18278173	X_18278173_SNP [dm3] X_18384140_SNP [dm6]	A	G	6.572e^-4	0.996	SYNONYMOUS_CODING betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14016344	3R_14016344_SNP [dm3] 3R_18190622_SNP [dm6]	T	C	6.582e^-4	0.996	SYNONYMOUS_CODING MED17 DOWNSTREAM CG14313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10338885	X_10338885_SNP [dm3] X_10444852_SNP [dm6]	C	A	6.594e^-4	0.996	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
X	10338891	X_10338891_SNP [dm3] X_10444858_SNP [dm6]	C	T	6.594e^-4	0.996	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
X	10338894	X_10338894_SNP [dm3] X_10444861_SNP [dm6]	G	C	6.594e^-4	0.996	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	14502746	2L_14502746_SNP [dm3] 2L_14502746_SNP [dm6]	T	A	6.594e^-4	0.996	INTERGENIC
2R	19897978	2R_19897978_SNP [dm3] 2R_24010455_SNP [dm6]	T	C	6.598e^-4	0.996	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2541743	3L_2541743_SNP [dm3] 3L_2541743_SNP [dm6]	G	A	6.604e^-4	0.996	INTRON Spn
X	18776295	X_18776295_SNP [dm3] X_18882262_SNP [dm6]	G	A	6.611e^-4	0.996	UTR_3_PRIME CG34401
3R	16139394	3R_16139394_SNP [dm3] 3R_20313672_SNP [dm6]	G	A	6.612e^-4	0.996	INTRON CG42668
3R	16139508	3R_16139508_SNP [dm3] 3R_20313786_SNP [dm6]	T	C	6.612e^-4	0.996	INTRON CG42668
X	15177612	X_15177612_SNP [dm3] X_15283579_SNP [dm6]	A	C	6.618e^-4	0.996	INTERGENIC
2R	16768094	2R_16768094_SNP [dm3] 2R_20880589_SNP [dm6]	T	C	6.621e^-4	0.996	INTRON Cib2
2R	16768131	2R_16768131_SNP [dm3] 2R_20880626_SNP [dm6]	G	C	6.621e^-4	0.996	INTRON Cib2
3L	2300427	3L_2300427_SNP [dm3] 3L_2300427_SNP [dm6]	C	T	6.628e^-4	0.996	SYNONYMOUS_CODING MsR2 UTR_3_PRIME MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21132412	2L_21132412_SNP [dm3] 2L_21132412_SNP [dm6]	G	A	6.641e^-4	0.996	SYNONYMOUS_CODING Nhe2 UTR_3_PRIME Nhe2 DOWNSTREAM Nhe2	TF binding site mE1_TFBS_cad
2R	13932340	2R_13932340_SNP [dm3] 2R_18044835_SNP [dm6]	A	T	6.644e^-4	0.996	NON_SYNONYMOUS_CODING CG5770
2L	7179520	2L_7179520_SNP [dm3] 2L_7179520_SNP [dm6]	T	A	6.661e^-4	0.996	INTERGENIC
X	2703800	X_2703800_SNP [dm3] X_2809767_SNP [dm6]	T	A	6.661e^-4	0.996	UPSTREAM CG12498 INTRON kirre
2L	1171278	2L_1171278_SNP [dm3] 2L_1171278_SNP [dm6]	A	G	6.693e^-4	0.996	NON_SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17503521	2L_17503521_SNP [dm3] 2L_17503521_SNP [dm6]	G	C	6.697e^-4	0.996	INTRON Dhc36C
3L	2429103	3L_2429103_SNP [dm3] 3L_2429103_SNP [dm6]	G	T	6.709e^-4	0.996	START_GAINED CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19208454	2L_19208454_SNP [dm3] 2L_19208454_SNP [dm6]	C	T	6.727e^-4	0.996	UTR_3_PRIME drl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5271762	3L_5271762_SNP [dm3] 3L_5278662_SNP [dm6]	G	C	6.735e^-4	0.996	UPSTREAM shep INTERGENIC
2L	10814885	2L_10814885_SNP [dm3] 2L_10814885_SNP [dm6]	G	C	6.746e^-4	0.996	INTRON Nos
2R	2105702	2R_2105702_SNP [dm3] 2R_6218197_SNP [dm6]	A	G	6.751e^-4	0.996	INTRON bin3 & 1 other
2L	12273280	2L_12273280_SNP [dm3] 2L_12273280_SNP [dm6]	C	T	6.756e^-4	0.996	INTRON aret
X	18931096	X_18931096_SNP [dm3] X_19037063_SNP [dm6]	A	T	6.758e^-4	0.996	INTERGENIC
3L	15000443	3L_15000443_SNP [dm3] 3L_15007343_SNP [dm6]	G	A	6.763e^-4	0.996	INTRON Reck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13928391	2R_13928391_SNP [dm3] 2R_18040886_SNP [dm6]	C	G	6.768e^-4	0.996	INTERGENIC
2R	6495830	2R_6495830_DEL [dm3] 2R_10608325_DEL [dm6]	TT	T	6.769e^-4	0.996	INTRON psq
2L	3222230	2L_3222230_DEL [dm3] 2L_3222230_DEL [dm6]	AT	A	6.772e^-4	0.996	INTERGENIC
3R	6941358	3R_6941358_SNP [dm3] 3R_11115636_SNP [dm6]	C	G	6.773e^-4	0.996	UTR_5_PRIME CG6629
X	3857153	X_3857153_SNP [dm3] X_3963120_SNP [dm6]	G	A	6.787e^-4	0.996	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3857154	X_3857154_SNP [dm3] X_3963121_SNP [dm6]	G	A	6.787e^-4	0.996	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14883600	2R_14883600_SNP [dm3] 2R_18996095_SNP [dm6]	T	A	6.790e^-4	0.996	INTRON tn
2R	17865573	2R_17865573_SNP [dm3] 2R_21978068_SNP [dm6]	A	G	6.793e^-4	0.996	DOWNSTREAM Gr58b & 1 other INTERGENIC
2L	16862013	2L_16862013_SNP [dm3] 2L_16862013_SNP [dm6]	A	T	6.794e^-4	0.996	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13932329	2R_13932329_SNP [dm3] 2R_18044824_SNP [dm6]	A	G	6.802e^-4	0.996	SYNONYMOUS_CODING CG5770

By genomic position
Variant impact
Gene name

Ave_Social_Space phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results