DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.198e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001058
In_3R_Mo	0.026658

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.5685	0.0375
In_3R_Mo	3.323	0.0683

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2615 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10895995	3L_10895995_SNP [dm3] 3L_10902895_SNP [dm6]	G	A	2.284e^-6	0.645	INTERGENIC
3L	10896006	3L_10896006_SNP [dm3] 3L_10902906_SNP [dm6]	A	C	3.924e^-6	0.645	INTERGENIC
2L	20501211	2L_20501211_SNP [dm3] 2L_20501211_SNP [dm6]	A	T	4.850e^-6	0.645	INTERGENIC
2L	4710282	2L_4710282_SNP [dm3] 2L_4710282_SNP [dm6]	C	T	4.929e^-6	0.645	INTRON CG34351
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	5.644e^-6	0.645	INTERGENIC
2L	8875224	2L_8875224_SNP [dm3] 2L_8875224_SNP [dm6]	C	T	6.162e^-6	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5187924	2R_5187924_DEL [dm3] 2R_9300419_DEL [dm6]	TT	T	6.942e^-6	0.645	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
3L	3960282	3L_3960282_SNP [dm3] 3L_3960282_SNP [dm6]	G	C	7.204e^-6	0.645	UPSTREAM CG12605 INTRON CG12605
3L	3960289	3L_3960289_SNP [dm3] 3L_3960289_SNP [dm6]	G	C	7.204e^-6	0.645	UPSTREAM CG12605 INTRON CG12605
3L	10115869	3L_10115869_SNP [dm3] 3L_10122769_SNP [dm6]	A	G	7.928e^-6	0.645	INTRON dpr6
3L	3960284	3L_3960284_SNP [dm3] 3L_3960284_SNP [dm6]	T	G	9.523e^-6	0.645	UPSTREAM CG12605 INTRON CG12605
2R	11973345	2R_11973345_SNP [dm3] 2R_16085840_SNP [dm6]	A	C	9.785e^-6	0.645	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3960299	3L_3960299_SNP [dm3] 3L_3960299_SNP [dm6]	A	T	1.074e^-5	0.645	UPSTREAM CG12605 INTRON CG12605
3L	3960303	3L_3960303_SNP [dm3] 3L_3960303_SNP [dm6]	A	T	1.074e^-5	0.645	UPSTREAM CG12605 INTRON CG12605
3L	17319938	3L_17319938_SNP [dm3] 3L_17326838_SNP [dm6]	C	A	1.111e^-5	0.645	DOWNSTREAM Or74a INTERGENIC
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	1.129e^-5	0.645	INTRON dally
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	1.185e^-5	0.645	INTRON AGO3	transposable element FlyBase
3R	22989578	3R_22989578_SNP [dm3] 3R_27163856_SNP [dm6]	T	A	1.235e^-5	0.645	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
2R	7170821	2R_7170821_SNP [dm3] 2R_11283316_SNP [dm6]	G	A	1.432e^-5	0.645	SYNONYMOUS_CODING CG9062 UPSTREAM CG13220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2R	15568050	2R_15568050_SNP [dm3] 2R_19680545_SNP [dm6]	A	T	1.461e^-5	0.645	DOWNSTREAM CG15127 INTERGENIC
2L	17255535	2L_17255535_SNP [dm3] 2L_17255535_SNP [dm6]	T	G	1.536e^-5	0.645	INTRON beat-IIIc
2L	17255537	2L_17255537_SNP [dm3] 2L_17255537_SNP [dm6]	T	A	1.536e^-5	0.645	INTRON beat-IIIc
3L	3960446	3L_3960446_SNP [dm3] 3L_3960446_SNP [dm6]	G	C	1.934e^-5	0.645	UPSTREAM CG12605 INTRON CG12605
2R	15568105	2R_15568105_SNP [dm3] 2R_19680600_SNP [dm6]	C	A	2.122e^-5	0.645	DOWNSTREAM CG15127 INTERGENIC
3R	18802106	3R_18802106_SNP [dm3] 3R_22976384_SNP [dm6]	A	C	2.187e^-5	0.645	UPSTREAM CG17244 INTERGENIC
2R	16892823	2R_16892823_SNP [dm3] 2R_21005318_SNP [dm6]	T	A	2.286e^-5	0.645	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
3R	18541217	3R_18541217_SNP [dm3] 3R_22715495_SNP [dm6]	A	C	2.497e^-5	0.645	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4710330	2L_4710330_SNP [dm3] 2L_4710330_SNP [dm6]	C	T	2.507e^-5	0.645	INTRON CG34351
2R	14704169	2R_14704169_SNP [dm3] 2R_18816664_SNP [dm6]	G	A	2.573e^-5	0.645	UPSTREAM CG15096 INTERGENIC
2L	17255512	2L_17255512_SNP [dm3] 2L_17255512_SNP [dm6]	G	A	2.625e^-5	0.645	INTRON beat-IIIc
2R	14166263	2R_14166263_SNP [dm3] 2R_18278758_SNP [dm6]	T	C	2.757e^-5	0.645	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
2L	16381249	2L_16381249_SNP [dm3] 2L_16381249_SNP [dm6]	C	T	2.914e^-5	0.645	INTERGENIC
3R	25509567	3R_25509567_SNP [dm3] 3R_29683845_SNP [dm6]	T	G	2.970e^-5	0.645	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
3L	10266108	3L_10266108_SNP [dm3] 3L_10273008_SNP [dm6]	T	A	2.978e^-5	0.645	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	4598860	3L_4598860_SNP [dm3] 3L_4598860_SNP [dm6]	T	A	3.084e^-5	0.645	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
2L	17255531	2L_17255531_INS [dm3] 2L_17255531_INS [dm6]	T	TT	3.099e^-5	0.645	INTRON beat-IIIc
3L	17323366	3L_17323366_SNP [dm3] 3L_17330266_SNP [dm6]	G	A	3.203e^-5	0.645	INTERGENIC
3R	22392305	3R_22392305_SNP [dm3] 3R_26566583_SNP [dm6]	G	C	3.206e^-5	0.645	SPLICE_SITE_REGION scrib INTRON scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h
2L	17471364	2L_17471364_SNP [dm3] 2L_17471364_SNP [dm6]	A	G	3.233e^-5	0.645	UPSTREAM Sgt INTRON BicD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	3.282e^-5	0.645	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8169826	3R_8169826_SNP [dm3] 3R_12344104_SNP [dm6]	G	T	3.306e^-5	0.645	INTERGENIC
2R	7393068	2R_7393068_SNP [dm3] 2R_11505563_SNP [dm6]	G	T	3.345e^-5	0.645	INTRON inv
2R	7393078	2R_7393078_INS [dm3] 2R_11505573_INS [dm6]	T	TT	3.345e^-5	0.645	INTRON inv
3R	18802166	3R_18802166_SNP [dm3] 3R_22976444_SNP [dm6]	T	C	3.424e^-5	0.645	UPSTREAM CG17244 INTERGENIC
3R	18802252	3R_18802252_SNP [dm3] 3R_22976530_SNP [dm6]	A	C	3.424e^-5	0.645	UPSTREAM CG17244 INTERGENIC
3R	18802266	3R_18802266_SNP [dm3] 3R_22976544_SNP [dm6]	C	A	3.424e^-5	0.645	UPSTREAM CG17244 INTERGENIC
2L	20503081	2L_20503081_SNP [dm3] 2L_20503081_SNP [dm6]	G	T	3.495e^-5	0.645	INTERGENIC
3R	10231130	3R_10231130_SNP [dm3] 3R_14405408_SNP [dm6]	G	A	3.498e^-5	0.645	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
3L	10266273	3L_10266273_SNP [dm3] 3L_10273173_SNP [dm6]	G	C	3.590e^-5	0.645	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	21438473	3R_21438473_SNP [dm3] 3R_25612751_SNP [dm6]	T	A	3.699e^-5	0.645	INTRON Npl4
2L	19239420	2L_19239420_SNP [dm3] 2L_19239420_SNP [dm6]	T	A	3.760e^-5	0.645	INTERGENIC
2R	14559228	2R_14559228_SNP [dm3] 2R_18671723_SNP [dm6]	G	A	3.778e^-5	0.645	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10091601	2R_10091601_MNP [dm3] 2R_14204096_MNP [dm6]	AGA	TCT	3.803e^-5	0.645	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2918965	2L_2918965_SNP [dm3] 2L_2918965_SNP [dm6]	T	A	3.835e^-5	0.645	INTRON lilli
2R	15568400	2R_15568400_SNP [dm3] 2R_19680895_SNP [dm6]	T	G	3.863e^-5	0.645	UTR_3_PRIME CG15127
3L	8873547	3L_8873547_SNP [dm3] 3L_8880447_SNP [dm6]	G	A	3.934e^-5	0.645	INTRON dally
2R	15048933	2R_15048933_SNP [dm3] 2R_19161428_SNP [dm6]	A	G	4.051e^-5	0.645	INTRON ena
3R	25490028	3R_25490028_SNP [dm3] 3R_29664306_SNP [dm6]	T	C	4.063e^-5	0.645	UPSTREAM ppk21 INTERGENIC
2L	16703578	2L_16703578_SNP [dm3] 2L_16703578_SNP [dm6]	T	G	4.092e^-5	0.645	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4549688	X_4549688_SNP [dm3] X_4655655_SNP [dm6]	T	A	4.100e^-5	0.645	INTRON Cbp80
2L	17255501	2L_17255501_SNP [dm3] 2L_17255501_SNP [dm6]	G	A	4.155e^-5	0.645	INTRON beat-IIIc
3L	3960699	3L_3960699_SNP [dm3] 3L_3960699_SNP [dm6]	C	T	4.167e^-5	0.645	UPSTREAM CG12605 INTRON CG12605
3R	13473807	3R_13473807_SNP [dm3] 3R_17648085_SNP [dm6]	T	C	4.220e^-5	0.645	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12864776	2L_12864776_SNP [dm3] 2L_12864776_SNP [dm6]	C	T	4.341e^-5	0.645	INTERGENIC
2L	12864783	2L_12864783_SNP [dm3] 2L_12864783_SNP [dm6]	A	G	4.341e^-5	0.645	INTERGENIC
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	4.376e^-5	0.645	INTRON Eip75B
2R	9704817	2R_9704817_SNP [dm3] 2R_13817312_SNP [dm6]	C	T	4.432e^-5	0.645	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
2R	17886746	2R_17886746_SNP [dm3] 2R_21999241_SNP [dm6]	A	G	4.482e^-5	0.645	INTRON CG34370
3L	16228828	3L_16228828_SNP [dm3] 3L_16235728_SNP [dm6]	G	A	4.532e^-5	0.645	SYNONYMOUS_CODING l_3_72Dp
2R	17303620	2R_17303620_SNP [dm3] 2R_21416115_SNP [dm6]	C	T	4.542e^-5	0.645	INTRON Sdc
2L	10297946	2L_10297946_SNP [dm3] 2L_10297946_SNP [dm6]	G	A	4.707e^-5	0.645	INTRON CR44968 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	13874082	2L_13874082_SNP [dm3] 2L_13874082_SNP [dm6]	A	T	4.842e^-5	0.645	INTRON CenG1A
3R	26419331	3R_26419331_SNP [dm3] 3R_30593609_SNP [dm6]	G	A	4.902e^-5	0.645	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16223776	3L_16223776_SNP [dm3] 3L_16230676_SNP [dm6]	T	C	5.024e^-5	0.645	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3L	5268130	3L_5268130_SNP [dm3] 3L_5275030_SNP [dm6]	G	T	5.295e^-5	0.645	INTRON shep	TF binding site BDTNP1_TFBS_twi
3L	11378345	3L_11378345_SNP [dm3] 3L_11385245_SNP [dm6]	G	T	5.398e^-5	0.645	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	13475405	3R_13475405_SNP [dm3] 3R_17649683_SNP [dm6]	C	T	5.654e^-5	0.645	INTRON CG14322
2L	11157052	2L_11157052_SNP [dm3] 2L_11157052_SNP [dm6]	T	A	5.958e^-5	0.645	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
3R	16348130	3R_16348130_SNP [dm3] 3R_20522408_SNP [dm6]	T	C	5.974e^-5	0.645	INTERGENIC
3R	23035609	3R_23035609_SNP [dm3] 3R_27209887_SNP [dm6]	G	A	6.063e^-5	0.645	INTERGENIC
2L	3120627	2L_3120627_SNP [dm3] 2L_3120627_SNP [dm6]	G	C	6.149e^-5	0.645	INTRON toc
2L	11819850	2L_11819850_SNP [dm3] 2L_11819850_SNP [dm6]	A	G	6.382e^-5	0.645	INTRON Pde1c
2L	11913855	2L_11913855_SNP [dm3] 2L_11913855_SNP [dm6]	C	T	6.382e^-5	0.645	INTRON Pde1c
2L	12855068	2L_12855068_DEL [dm3] 2L_12855068_DEL [dm6]	CTTCTCTTTCGTC...	C	6.382e^-5	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10091608	2R_10091608_DEL [dm3] 2R_14204103_DEL [dm6]	CCA	TG	6.448e^-5	0.645	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091709	2R_10091709_SNP [dm3] 2R_14204204_SNP [dm6]	A	G	6.448e^-5	0.645	INTRON Sox15	regulatory region REDfly_CRMs
3L	16228918	3L_16228918_SNP [dm3] 3L_16235818_SNP [dm6]	G	A	6.471e^-5	0.645	SYNONYMOUS_CODING l_3_72Dp
2R	6935078	2R_6935078_SNP [dm3] 2R_11047573_SNP [dm6]	A	G	6.531e^-5	0.645	INTRON luna
3R	25490098	3R_25490098_SNP [dm3] 3R_29664376_SNP [dm6]	T	A	6.539e^-5	0.645	UPSTREAM ppk21 INTERGENIC
3L	11391875	3L_11391875_SNP [dm3] 3L_11398775_SNP [dm6]	T	A	6.646e^-5	0.645	DOWNSTREAM CG44362 INTERGENIC
3L	11391887	3L_11391887_SNP [dm3] 3L_11398787_SNP [dm6]	C	A	6.646e^-5	0.645	DOWNSTREAM CG44362 INTERGENIC
3L	16223766	3L_16223766_SNP [dm3] 3L_16230666_SNP [dm6]	C	T	6.700e^-5	0.645	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
2R	10091586	2R_10091586_INS [dm3] 2R_14204081_INS [dm6]	G	GA	6.761e^-5	0.645	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11819980	2L_11819980_SNP [dm3] 2L_11819980_SNP [dm6]	A	C	6.805e^-5	0.645	INTRON Pde1c
3L	7299023	3L_7299023_SNP [dm3] 3L_7305923_SNP [dm6]	C	T	6.891e^-5	0.645	INTRON unc-13-4A
X	4549691	X_4549691_SNP [dm3] X_4655658_SNP [dm6]	T	A	7.044e^-5	0.645	INTRON Cbp80
X	4549692	X_4549692_INS [dm3] X_4655659_INS [dm6]	T	TG	7.044e^-5	0.645	INTRON Cbp80
3L	1040033	3L_1040033_SNP [dm3] 3L_1040033_SNP [dm6]	G	A	7.094e^-5	0.645	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	7.167e^-5	0.645	INTRON sty
3L	7863797	3L_7863797_SNP [dm3] 3L_7870697_SNP [dm6]	G	C	7.435e^-5	0.645	INTRON CG32365
3L	2922088	3L_2922088_SNP [dm3] 3L_2922088_SNP [dm6]	G	A	7.482e^-5	0.645	INTRON Shab
2R	13683436	2R_13683436_SNP [dm3] 2R_17795931_SNP [dm6]	A	T	7.498e^-5	0.645	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10266111	3L_10266111_SNP [dm3] 3L_10273011_SNP [dm6]	T	A	7.540e^-5	0.645	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	4624452	2L_4624452_SNP [dm3] 2L_4624452_SNP [dm6]	T	A	7.559e^-5	0.645	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5144098	2R_5144098_SNP [dm3] 2R_9256593_SNP [dm6]	G	T	7.587e^-5	0.645	UPSTREAM Pkn INTRON Pkn
2L	17800224	2L_17800224_SNP [dm3] 2L_17800224_SNP [dm6]	T	C	7.604e^-5	0.645	INTRON CadN2
3R	13454698	3R_13454698_SNP [dm3] 3R_17628976_SNP [dm6]	G	T	7.627e^-5	0.645	NON_SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3L	14899339	3L_14899339_SNP [dm3] 3L_14906239_SNP [dm6]	C	A	7.633e^-5	0.645	INTRON DCX-EMAP
2R	13239136	2R_13239136_SNP [dm3] 2R_17351631_SNP [dm6]	G	C	7.675e^-5	0.645	INTRON mbl
3R	20619343	3R_20619343_SNP [dm3] 3R_24793621_SNP [dm6]	A	T	7.760e^-5	0.645	INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5679309	3L_5679309_SNP [dm3] 3L_5686209_SNP [dm6]	G	A	7.796e^-5	0.645	INTRON sif
2L	17528743	2L_17528743_SNP [dm3] 2L_17528743_SNP [dm6]	A	C	7.828e^-5	0.645	NON_SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
3L	11391993	3L_11391993_SNP [dm3] 3L_11398893_SNP [dm6]	T	A	7.970e^-5	0.645	INTERGENIC
3L	11378360	3L_11378360_SNP [dm3] 3L_11385260_SNP [dm6]	A	G	7.980e^-5	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19613854	3R_19613854_SNP [dm3] 3R_23788132_SNP [dm6]	C	T	7.986e^-5	0.645	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13805875	3R_13805875_INS [dm3] 3R_17980153_INS [dm6]	T	TCA	8.268e^-5	0.645	INTRON cpo
3L	19698802	3L_19698802_INS [dm3] 3L_19705702_INS [dm6]	A	AG	8.271e^-5	0.645	INTRON serp
3L	19698805	3L_19698805_DEL [dm3] 3L_19705705_DEL [dm6]	ACACTTTTTATT...	A	8.271e^-5	0.645	INTRON serp
3L	19698818	3L_19698818_SNP [dm3] 3L_19705718_SNP [dm6]	C	G	8.271e^-5	0.645	INTRON serp
3R	16345232	3R_16345232_SNP [dm3] 3R_20519510_SNP [dm6]	C	A	8.274e^-5	0.645	INTERGENIC
3R	26639905	3R_26639905_SNP [dm3] 3R_30814183_SNP [dm6]	G	C	8.380e^-5	0.645	INTRON cindr
3L	16223929	3L_16223929_SNP [dm3] 3L_16230829_SNP [dm6]	A	G	8.423e^-5	0.645	UTR_3_PRIME CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
2L	15467447	2L_15467447_SNP [dm3] 2L_15467447_SNP [dm6]	T	C	8.445e^-5	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15039681	3L_15039681_INS [dm3] 3L_15046581_INS [dm6]	A	ATACTTTAATGGATGTA...	8.445e^-5	0.645	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2473889	3L_2473889_DEL [dm3] 3L_2473889_DEL [dm6]	TT	T	8.445e^-5	0.645	DOWNSTREAM CG16762 INTRON CG45186
3R	26419149	3R_26419149_SNP [dm3] 3R_30593427_SNP [dm6]	A	G	8.445e^-5	0.645	INTRON CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26419328	3R_26419328_SNP [dm3] 3R_30593606_SNP [dm6]	G	A	8.445e^-5	0.645	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4818377	2L_4818377_INS [dm3] 2L_4818377_INS [dm6]	T	TT	8.459e^-5	0.645	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5887197	2L_5887197_SNP [dm3] 2L_5887197_SNP [dm6]	T	C	8.459e^-5	0.645	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other INTERGENIC
2R	6021890	2R_6021890_SNP [dm3] 2R_10134385_SNP [dm6]	G	C	8.654e^-5	0.645	UPSTREAM gem INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15310872	2L_15310872_SNP [dm3] 2L_15310872_SNP [dm6]	T	C	8.660e^-5	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	3744011	2R_3744011_SNP [dm3] 2R_7856506_SNP [dm6]	C	T	8.796e^-5	0.645	INTRON Dgk
X	4979384	X_4979384_INS [dm3] X_5085351_INS [dm6]	T	TG	9.154e^-5	0.645	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19477988	2L_19477988_INS [dm3] 2L_19477988_INS [dm6]	T	TGCT	9.366e^-5	0.645	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18242800	2L_18242800_SNP [dm3] 2L_18242800_SNP [dm6]	A	G	9.465e^-5	0.645	INTRON CG42750
2L	5506171	2L_5506171_SNP [dm3] 2L_5506171_SNP [dm6]	T	C	9.584e^-5	0.645	INTERGENIC
3R	21368046	3R_21368046_SNP [dm3] 3R_25542324_SNP [dm6]	A	G	9.780e^-5	0.645	INTRON msi
3L	4268564	3L_4268564_SNP [dm3] 3L_4268564_SNP [dm6]	G	A	9.819e^-5	0.645	INTRON CG1273
3L	4268579	3L_4268579_SNP [dm3] 3L_4268579_SNP [dm6]	A	T	9.819e^-5	0.645	INTRON CG1273
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	9.852e^-5	0.645	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4839688	3L_4839688_SNP [dm3] 3L_4839688_SNP [dm6]	A	T	9.962e^-5	0.645	UTR_5_PRIME CG13707 INTRON CG13707
X	21092778	X_21092778_SNP [dm3] X_21221751_SNP [dm6]	C	T	1.004e^-4	0.645	INTRON CG32521
X	10883491	X_10883491_SNP [dm3] X_10989458_SNP [dm6]	G	T	1.011e^-4	0.645	INTRON CG42339
3R	22988159	3R_22988159_SNP [dm3] 3R_27162437_SNP [dm6]	G	A	1.021e^-4	0.645	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3R	22988168	3R_22988168_SNP [dm3] 3R_27162446_SNP [dm6]	C	T	1.021e^-4	0.645	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3L	8199668	3L_8199668_SNP [dm3] 3L_8206568_SNP [dm6]	T	A	1.022e^-4	0.645	INTERGENIC
3L	10265975	3L_10265975_INS [dm3] 3L_10272875_INS [dm6]	T	TGGAAGAT	1.027e^-4	0.645	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	21730755	3R_21730755_SNP [dm3] 3R_25905033_SNP [dm6]	A	T	1.034e^-4	0.645	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2L	9653768	2L_9653768_SNP [dm3] 2L_9653768_SNP [dm6]	T	A	1.035e^-4	0.645	SPLICE_SITE_REGION Apoltp INTRON Apoltp
3R	9623603	3R_9623603_SNP [dm3] 3R_13797881_SNP [dm6]	C	A	1.036e^-4	0.645	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10524909	2L_10524909_SNP [dm3] 2L_10524909_SNP [dm6]	T	G	1.047e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16497527	3L_16497527_SNP [dm3] 3L_16504427_SNP [dm6]	C	A	1.071e^-4	0.645	SYNONYMOUS_CODING CG43373 UTR_3_PRIME CG43373
2L	12052833	2L_12052833_SNP [dm3] 2L_12052833_SNP [dm6]	C	T	1.072e^-4	0.645	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
X	15285657	X_15285657_SNP [dm3] X_15391624_SNP [dm6]	G	A	1.077e^-4	0.645	INTRON Cngl
3L	9585423	3L_9585423_SNP [dm3] 3L_9592323_SNP [dm6]	T	C	1.086e^-4	0.645	INTRON CG42673
2R	16702726	2R_16702726_SNP [dm3] 2R_20815221_SNP [dm6]	C	T	1.098e^-4	0.645	INTERGENIC
3L	15454543	3L_15454543_SNP [dm3] 3L_15461443_SNP [dm6]	A	C	1.105e^-4	0.645	INTERGENIC
3R	23980028	3R_23980028_SNP [dm3] 3R_28154306_SNP [dm6]	C	T	1.105e^-4	0.645	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	16428360	2R_16428360_SNP [dm3] 2R_20540855_SNP [dm6]	C	G	1.113e^-4	0.645	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4710564	2L_4710564_SNP [dm3] 2L_4710564_SNP [dm6]	A	G	1.116e^-4	0.645	INTRON CG34351	TF binding site mE1_TFBS_chinmo
3L	15028922	3L_15028922_SNP [dm3] 3L_15035822_SNP [dm6]	T	C	1.116e^-4	0.645	INTRON Sytbeta
3L	15028970	3L_15028970_SNP [dm3] 3L_15035870_SNP [dm6]	T	C	1.116e^-4	0.645	INTRON Sytbeta
3L	10715654	3L_10715654_SNP [dm3] 3L_10722554_SNP [dm6]	A	T	1.119e^-4	0.645	INTERGENIC
2L	2781670	2L_2781670_DEL [dm3] 2L_2781670_DEL [dm6]	ACAATA	A	1.123e^-4	0.645	UTR_3_PRIME Syt1
2R	13238366	2R_13238366_SNP [dm3] 2R_17350861_SNP [dm6]	A	G	1.144e^-4	0.645	INTRON mbl
3L	1039976	3L_1039976_SNP [dm3] 3L_1039976_SNP [dm6]	T	A	1.159e^-4	0.645	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25490267	3R_25490267_SNP [dm3] 3R_29664545_SNP [dm6]	C	G	1.181e^-4	0.645	UPSTREAM ppk21 INTERGENIC
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	1.183e^-4	0.645	INTERGENIC
3R	19612729	3R_19612729_SNP [dm3] 3R_23787007_SNP [dm6]	T	A	1.203e^-4	0.645	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15819857	3R_15819857_SNP [dm3] 3R_19994135_SNP [dm6]	C	T	1.210e^-4	0.645	INTRON Hs6st
2L	3407364	2L_3407364_SNP [dm3] 2L_3407364_SNP [dm6]	G	T	1.214e^-4	0.645	SYNONYMOUS_CODING pgant2
X	8100048	X_8100048_SNP [dm3] X_8206015_SNP [dm6]	T	C	1.236e^-4	0.645	INTRON sdt
3R	20619004	3R_20619004_SNP [dm3] 3R_24793282_SNP [dm6]	T	G	1.239e^-4	0.645	INTRON Ets96B	TF binding site mE1_TFBS_cad
2L	7238725	2L_7238725_INS [dm3] 2L_7238725_INS [dm6]	C	CC	1.241e^-4	0.645	INTRON Ndae1
X	2605989	X_2605989_SNP [dm3] X_2711956_SNP [dm6]	T	G	1.244e^-4	0.645	SYNONYMOUS_CODING CG2685 DOWNSTREAM CG2681	TF binding site mE1_TFBS_chinmo
3R	10171383	3R_10171383_SNP [dm3] 3R_14345661_SNP [dm6]	G	C	1.245e^-4	0.645	INTRON NK7.1	TF binding site mE1_TFBS_cad
3L	17327210	3L_17327210_SNP [dm3] 3L_17334110_SNP [dm6]	T	A	1.248e^-4	0.645	EXON CR44563
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	1.261e^-4	0.645	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	15397471	2R_15397471_SNP [dm3] 2R_19509966_SNP [dm6]	A	C	1.261e^-4	0.645	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3L	5300811	3L_5300811_INS [dm3] 3L_5307711_INS [dm6]	G	GC	1.264e^-4	0.645	INTERGENIC
2L	14771788	2L_14771788_SNP [dm3] 2L_14771788_SNP [dm6]	A	T	1.268e^-4	0.645	INTERGENIC
2R	13239081	2R_13239081_SNP [dm3] 2R_17351576_SNP [dm6]	T	C	1.268e^-4	0.645	INTRON mbl
2L	4252088	2L_4252088_SNP [dm3] 2L_4252088_SNP [dm6]	C	G	1.269e^-4	0.645	INTERGENIC
3L	9282952	3L_9282952_SNP [dm3] 3L_9289852_SNP [dm6]	G	C	1.269e^-4	0.645	INTERGENIC
3R	22520694	3R_22520694_SNP [dm3] 3R_26694972_SNP [dm6]	C	G	1.282e^-4	0.645	INTERGENIC
2L	14545701	2L_14545701_SNP [dm3] 2L_14545701_SNP [dm6]	G	A	1.284e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22452488	3R_22452488_SNP [dm3] 3R_26626766_SNP [dm6]	A	C	1.304e^-4	0.645	UPSTREAM TwdlO INTERGENIC
2R	18202291	2R_18202291_SNP [dm3] 2R_22314786_SNP [dm6]	C	T	1.307e^-4	0.645	INTRON CR44758
2L	19684253	2L_19684253_SNP [dm3] 2L_19684253_SNP [dm6]	A	C	1.324e^-4	0.645	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4965994	3L_4965994_SNP [dm3] 3L_4965994_SNP [dm6]	T	G	1.337e^-4	0.645	INTRON Con	TF binding site BDTNP1_TFBS_prd
3R	10059491	3R_10059491_SNP [dm3] 3R_14233769_SNP [dm6]	G	A	1.337e^-4	0.645	INTERGENIC
2R	10821583	2R_10821583_INS [dm3] 2R_14934078_INS [dm6]	G	GAG	1.342e^-4	0.645	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11096215	3L_11096215_SNP [dm3] 3L_11103115_SNP [dm6]	G	T	1.355e^-4	0.645	UPSTREAM Elo68alpha DOWNSTREAM CG32071 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2175085	3L_2175085_SNP [dm3] 3L_2175085_SNP [dm6]	T	G	1.356e^-4	0.645	UPSTREAM CG15820 INTERGENIC
3L	10774244	3L_10774244_SNP [dm3] 3L_10781144_SNP [dm6]	A	T	1.356e^-4	0.645	INTERGENIC
3R	3495841	3R_3495841_SNP [dm3] 3R_7670119_SNP [dm6]	T	A	1.360e^-4	0.645	INTRON Nlg1
3L	4966025	3L_4966025_SNP [dm3] 3L_4966025_SNP [dm6]	T	A	1.371e^-4	0.645	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	4966030	3L_4966030_SNP [dm3] 3L_4966030_SNP [dm6]	A	C	1.371e^-4	0.645	INTRON Con	TF binding site BDTNP1_TFBS_prd
3L	4966033	3L_4966033_SNP [dm3] 3L_4966033_SNP [dm6]	G	A	1.371e^-4	0.645	INTRON Con	TF binding site BDTNP1_TFBS_prd
3R	25158851	3R_25158851_SNP [dm3] 3R_29333129_SNP [dm6]	G	A	1.380e^-4	0.645	INTERGENIC
3R	25158853	3R_25158853_SNP [dm3] 3R_29333131_SNP [dm6]	G	T	1.380e^-4	0.645	INTERGENIC
2R	18616090	2R_18616090_SNP [dm3] 2R_22728585_SNP [dm6]	G	A	1.383e^-4	0.645	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	1544546	2L_1544546_SNP [dm3] 2L_1544546_SNP [dm6]	C	A	1.385e^-4	0.645	INTERGENIC
3L	3974743	3L_3974743_INS [dm3] 3L_3974743_INS [dm6]	G	GTCTTGG	1.396e^-4	0.645	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	12639238	3L_12639238_INS [dm3] 3L_12646138_INS [dm6]	A	AATTATTCC	1.417e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
3L	12639240	3L_12639240_SNP [dm3] 3L_12646140_SNP [dm6]	C	G	1.417e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
2R	14559227	2R_14559227_INS [dm3] 2R_18671722_INS [dm6]	A	ACCA	1.420e^-4	0.645	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9587525	3L_9587525_SNP [dm3] 3L_9594425_SNP [dm6]	C	G	1.424e^-4	0.645	UTR_3_PRIME CG42673 INTRON CG42673
3R	9623575	3R_9623575_SNP [dm3] 3R_13797853_SNP [dm6]	C	T	1.427e^-4	0.645	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2132606	2L_2132606_INS [dm3] 2L_2132606_INS [dm6]	A	AGTA	1.429e^-4	0.645	INTRON GlyP
2L	13765475	2L_13765475_SNP [dm3] 2L_13765475_SNP [dm6]	T	C	1.442e^-4	0.645	INTRON TM9SF4
2L	14171714	2L_14171714_SNP [dm3] 2L_14171714_SNP [dm6]	C	T	1.452e^-4	0.645	INTRON CG43333
2L	18250700	2L_18250700_SNP [dm3] 2L_18250700_SNP [dm6]	G	T	1.459e^-4	0.645	UPSTREAM CG43406 INTRON CG42750
2R	13182925	2R_13182925_SNP [dm3] 2R_17295420_SNP [dm6]	G	C	1.467e^-4	0.645	INTRON mbl
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	1.470e^-4	0.645	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7635064	3L_7635064_SNP [dm3] 3L_7641964_SNP [dm6]	A	C	1.474e^-4	0.645	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21457806	3R_21457806_SNP [dm3] 3R_25632084_SNP [dm6]	A	G	1.510e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21457849	3R_21457849_SNP [dm3] 3R_25632127_SNP [dm6]	C	T	1.510e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3788465	2L_3788465_SNP [dm3] 2L_3788465_SNP [dm6]	G	C	1.522e^-4	0.645	INTRON CG3921
X	981594	X_981594_SNP [dm3] X_1087561_SNP [dm6]	G	C	1.522e^-4	0.645	INTRON CR44779 & 1 other EXON CR44779
3R	9845823	3R_9845823_SNP [dm3] 3R_14020101_SNP [dm6]	A	G	1.526e^-4	0.645	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24677888	3R_24677888_SNP [dm3] 3R_28852166_SNP [dm6]	C	G	1.552e^-4	0.645	INTRON spg
2L	14223748	2L_14223748_INS [dm3] 2L_14223748_INS [dm6]	A	ACAAA	1.560e^-4	0.645	INTRON Dyrk2
2R	10862759	2R_10862759_SNP [dm3] 2R_14975254_SNP [dm6]	A	T	1.562e^-4	0.645	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25518523	3R_25518523_SNP [dm3] 3R_29692801_SNP [dm6]	G	A	1.562e^-4	0.645	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3741801	2R_3741801_SNP [dm3] 2R_7854296_SNP [dm6]	G	A	1.564e^-4	0.645	SYNONYMOUS_CODING Dgk INTRON Dgk
2R	3741820	2R_3741820_INS [dm3] 2R_7854315_INS [dm6]	C	CCTCCGC	1.564e^-4	0.645	CODON_INSERTION Dgk INTRON Dgk
3R	10501998	3R_10501998_DEL [dm3] 3R_14676276_DEL [dm6]	AG	A	1.565e^-4	0.645	INTRON Meltrin	TF binding site mE1_TFBS_cad
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	1.568e^-4	0.645	INTRON dpr
2L	17453263	2L_17453263_SNP [dm3] 2L_17453263_SNP [dm6]	A	T	1.580e^-4	0.645	SYNONYMOUS_CODING CG5050 DOWNSTREAM CG6639
3L	16275496	3L_16275496_SNP [dm3] 3L_16282396_SNP [dm6]	T	C	1.594e^-4	0.645	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
3L	19689748	3L_19689748_DEL [dm3] 3L_19696648_DEL [dm6]	ATACTTATAAGTTCA...	A	1.598e^-4	0.645	INTERGENIC
2R	17721362	2R_17721362_SNP [dm3] 2R_21833857_SNP [dm6]	A	G	1.600e^-4	0.645	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2R	14164204	2R_14164204_SNP [dm3] 2R_18276699_SNP [dm6]	T	G	1.600e^-4	0.645	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13475322	3R_13475322_SNP [dm3] 3R_17649600_SNP [dm6]	C	A	1.602e^-4	0.645	INTRON CG14322
3R	18797339	3R_18797339_SNP [dm3] 3R_22971617_SNP [dm6]	C	G	1.615e^-4	0.645	INTERGENIC
3R	22452204	3R_22452204_SNP [dm3] 3R_26626482_SNP [dm6]	G	A	1.615e^-4	0.645	SYNONYMOUS_CODING TwdlO UPSTREAM TwdlL	TF binding site mE1_TFBS_chinmo
3L	2074698	3L_2074698_SNP [dm3] 3L_2074698_SNP [dm6]	C	G	1.615e^-4	0.645	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3R	8396921	3R_8396921_SNP [dm3] 3R_12571199_SNP [dm6]	G	A	1.619e^-4	0.645	INTRON Octbeta2R
3R	8426086	3R_8426086_SNP [dm3] 3R_12600364_SNP [dm6]	A	G	1.619e^-4	0.645	INTERGENIC
3R	16805412	3R_16805412_SNP [dm3] 3R_20979690_SNP [dm6]	T	C	1.635e^-4	0.645	INTRON Calx
3R	13475570	3R_13475570_SNP [dm3] 3R_17649848_SNP [dm6]	C	A	1.654e^-4	0.645	INTRON CG14322
X	10544543	X_10544543_SNP [dm3] X_10650510_SNP [dm6]	C	A	1.658e^-4	0.645	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10717219	2R_10717219_SNP [dm3] 2R_14829714_SNP [dm6]	G	T	1.677e^-4	0.645	INTERGENIC
2R	7001092	2R_7001092_SNP [dm3] 2R_11113587_SNP [dm6]	G	C	1.683e^-4	0.645	INTRON luna
2R	7001189	2R_7001189_SNP [dm3] 2R_11113684_SNP [dm6]	A	G	1.683e^-4	0.645	INTRON luna
3R	21883743	3R_21883743_SNP [dm3] 3R_26058021_SNP [dm6]	T	A	1.697e^-4	0.645	NON_SYNONYMOUS_CODING CG42498 START_GAINED CG14550 UTR_5_PRIME CG14550 DOWNSTREAM CG14543 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	17447586	2R_17447586_INS [dm3] 2R_21560081_INS [dm6]	A	AA	1.705e^-4	0.645	DOWNSTREAM CG10440 & 1 other INTERGENIC
3R	20215611	3R_20215611_SNP [dm3] 3R_24389889_SNP [dm6]	G	A	1.716e^-4	0.645	UPSTREAM CG13615 INTRON CG5768
3R	20215613	3R_20215613_SNP [dm3] 3R_24389891_SNP [dm6]	A	G	1.716e^-4	0.645	UPSTREAM CG13615 INTRON CG5768
3R	16233833	3R_16233833_SNP [dm3] 3R_20408111_SNP [dm6]	A	G	1.729e^-4	0.645	UPSTREAM CG10881 & 1 other INTRON Gfrl
2R	12073298	2R_12073298_SNP [dm3] 2R_16185793_SNP [dm6]	T	A	1.734e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4979390	X_4979390_SNP [dm3] X_5085357_SNP [dm6]	A	G	1.735e^-4	0.645	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	5379229	X_5379229_DEL [dm3] X_5485196_DEL [dm6]	ACA	A	1.740e^-4	0.645	INTRON SPR
2R	8904382	2R_8904382_SNP [dm3] 2R_13016877_SNP [dm6]	G	C	1.754e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22519816	3R_22519816_SNP [dm3] 3R_26694094_SNP [dm6]	T	A	1.754e^-4	0.645	UPSTREAM TwdlQ INTERGENIC
3R	25306482	3R_25306482_SNP [dm3] 3R_29480760_SNP [dm6]	G	A	1.754e^-4	0.645	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	8213359	3L_8213359_SNP [dm3] 3L_8220259_SNP [dm6]	A	G	1.771e^-4	0.645	INTERGENIC
X	14767829	X_14767829_SNP [dm3] X_14873796_SNP [dm6]	A	G	1.783e^-4	0.645	INTRON Flo2
X	8986024	X_8986024_SNP [dm3] X_9091991_SNP [dm6]	A	G	1.793e^-4	0.645	SYNONYMOUS_CODING CG7033 DOWNSTREAM mir-13b-2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9821265	3R_9821265_SNP [dm3] 3R_13995543_SNP [dm6]	G	C	1.798e^-4	0.645	INTRON rdx
3L	21591043	3L_21591043_SNP [dm3] 3L_21597943_SNP [dm6]	G	T	1.800e^-4	0.645	UPSTREAM TfAP-2 INTRON TfAP-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1074961	2L_1074961_SNP [dm3] 2L_1074961_SNP [dm6]	T	G	1.800e^-4	0.645	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	16703580	2L_16703580_SNP [dm3] 2L_16703580_SNP [dm6]	A	T	1.821e^-4	0.645	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13663215	2R_13663215_SNP [dm3] 2R_17775710_SNP [dm6]	G	A	1.823e^-4	0.645	SPLICE_SITE_REGION fab1 & 1 other INTRON fab1 & 1 other
2L	17267937	2L_17267937_SNP [dm3] 2L_17267937_SNP [dm6]	G	T	1.830e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15327890	2L_15327890_SNP [dm3] 2L_15327890_SNP [dm6]	T	A	1.835e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5196857	X_5196857_SNP [dm3] X_5302824_SNP [dm6]	T	G	1.836e^-4	0.645	UTR_3_PRIME CG42749 DOWNSTREAM CG3323 INTRON CG42749
3L	17308246	3L_17308246_SNP [dm3] 3L_17315146_SNP [dm6]	C	A	1.839e^-4	0.645	DOWNSTREAM mir-219 INTERGENIC	TF binding site mE1_TFBS_cad
X	1060563	X_1060563_SNP [dm3] X_1166530_SNP [dm6]	T	C	1.858e^-4	0.645	INTERGENIC
2R	7885352	2R_7885352_SNP [dm3] 2R_11997847_SNP [dm6]	C	G	1.864e^-4	0.645	INTERGENIC
2R	7891607	2R_7891607_SNP [dm3] 2R_12004102_SNP [dm6]	C	G	1.864e^-4	0.645	NON_SYNONYMOUS_CODING otk
2L	14546107	2L_14546107_SNP [dm3] 2L_14546107_SNP [dm6]	C	T	1.865e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	1.874e^-4	0.645	INTRON Sema-2a
2R	16760659	2R_16760659_SNP [dm3] 2R_20873154_SNP [dm6]	G	C	1.880e^-4	0.645	INTRON Ipk1	TF binding site mE1_TFBS_cad
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	1.885e^-4	0.645	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3L	5878794	3L_5878794_SNP [dm3] 3L_5885694_SNP [dm6]	C	A	1.912e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	17502985	X_17502985_SNP [dm3] X_17608952_SNP [dm6]	C	T	1.914e^-4	0.645	INTERGENIC
2L	6414306	2L_6414306_SNP [dm3] 2L_6414306_SNP [dm6]	C	T	1.915e^-4	0.645	UTR_3_PRIME CG13982 DOWNSTREAM Tig
2R	10862770	2R_10862770_SNP [dm3] 2R_14975265_SNP [dm6]	C	T	1.916e^-4	0.645	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18360217	3L_18360217_SNP [dm3] 3L_18367117_SNP [dm6]	A	T	1.928e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25490011	3R_25490011_SNP [dm3] 3R_29664289_SNP [dm6]	C	A	1.931e^-4	0.645	UPSTREAM ppk21 INTERGENIC
2R	8307374	2R_8307374_SNP [dm3] 2R_12419869_SNP [dm6]	T	C	1.941e^-4	0.645	NON_SYNONYMOUS_CODING CG8834 UPSTREAM CG42782 DOWNSTREAM CG8834
2L	1090349	2L_1090349_SNP [dm3] 2L_1090349_SNP [dm6]	A	C	1.942e^-4	0.645	INTRON CG4629
2L	13761030	2L_13761030_SNP [dm3] 2L_13761030_SNP [dm6]	T	C	1.942e^-4	0.645	INTRON TM9SF4
2R	18266733	2R_18266733_DEL [dm3] 2R_22379228_DEL [dm6]	ACA	A	1.949e^-4	0.645	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
X	2372661	X_2372661_SNP [dm3] X_2478628_SNP [dm6]	G	T	1.951e^-4	0.645	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3R	22992743	3R_22992743_SNP [dm3] 3R_27167021_SNP [dm6]	T	A	1.955e^-4	0.645	UTR_3_PRIME spn-D	regulatory region REDfly_CRMs
3R	22992880	3R_22992880_SNP [dm3] 3R_27167158_SNP [dm6]	G	C	1.955e^-4	0.645	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
3R	22992883	3R_22992883_SNP [dm3] 3R_27167161_SNP [dm6]	A	G	1.955e^-4	0.645	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
3L	9378138	3L_9378138_SNP [dm3] 3L_9385038_SNP [dm6]	C	A	1.959e^-4	0.645	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site mE1_TFBS_cad
3L	6757216	3L_6757216_SNP [dm3] 3L_6764116_SNP [dm6]	A	T	1.960e^-4	0.645	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16227333	3R_16227333_SNP [dm3] 3R_20401611_SNP [dm6]	C	T	1.974e^-4	0.645	INTRON Gfrl
2L	5892797	2L_5892797_SNP [dm3] 2L_5892797_SNP [dm6]	A	G	1.979e^-4	0.645	DOWNSTREAM Acp26Aa INTRON Acp26Ab	TF binding site mE1_TFBS_sens
2R	13663186	2R_13663186_SNP [dm3] 2R_17775681_SNP [dm6]	A	G	1.982e^-4	0.645	INTRON fab1 & 1 other
X	15285745	X_15285745_SNP [dm3] X_15391712_SNP [dm6]	A	T	1.983e^-4	0.645	INTRON Cngl
X	15285765	X_15285765_SNP [dm3] X_15391732_SNP [dm6]	G	A	1.983e^-4	0.645	INTRON Cngl
2R	16014068	2R_16014068_DEL [dm3] 2R_20126563_DEL [dm6]	CC	C	1.984e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5275604	X_5275604_SNP [dm3] X_5381571_SNP [dm6]	T	A	1.985e^-4	0.645	INTRON SK
3R	13475569	3R_13475569_SNP [dm3] 3R_17649847_SNP [dm6]	T	A	1.988e^-4	0.645	INTRON CG14322
3L	8242266	3L_8242266_SNP [dm3] 3L_8249166_SNP [dm6]	A	T	1.989e^-4	0.645	INTRON Dscam4
3L	8242334	3L_8242334_SNP [dm3] 3L_8249234_SNP [dm6]	C	A	1.989e^-4	0.645	INTRON Dscam4
3R	22921582	3R_22921582_DEL [dm3] 3R_27095860_DEL [dm6]	CA	C	1.990e^-4	0.645	DOWNSTREAM eater & 1 other INTERGENIC
2R	9679482	2R_9679482_SNP [dm3] 2R_13791977_SNP [dm6]	C	A	1.992e^-4	0.645	EXON CR43811
2R	3568154	2R_3568154_SNP [dm3] 2R_7680649_SNP [dm6]	G	A	1.999e^-4	0.645	INTRON CG1399
2L	15652102	2L_15652102_SNP [dm3] 2L_15652102_SNP [dm6]	A	G	2.000e^-4	0.645	SPLICE_SITE_REGION CG4587 INTRON CG4587
2L	20500675	2L_20500675_SNP [dm3] 2L_20500675_SNP [dm6]	C	G	2.003e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7473880	2R_7473880_SNP [dm3] 2R_11586375_SNP [dm6]	T	G	2.014e^-4	0.645	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15286551	X_15286551_SNP [dm3] X_15392518_SNP [dm6]	G	A	2.017e^-4	0.645	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2L	13950814	2L_13950814_SNP [dm3] 2L_13950814_SNP [dm6]	A	G	2.033e^-4	0.645	INTRON Ance-3
2R	3741666	2R_3741666_SNP [dm3] 2R_7854161_SNP [dm6]	G	C	2.036e^-4	0.645	SPLICE_SITE_REGION Dgk SYNONYMOUS_CODING Dgk INTRON Dgk
2L	7962985	2L_7962985_SNP [dm3] 2L_7962985_SNP [dm6]	A	C	2.039e^-4	0.645	INTRON Snoo
3R	22446185	3R_22446185_DEL [dm3] 3R_26620463_DEL [dm6]	TTATTTCTT	T	2.056e^-4	0.645	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22446232	3R_22446232_DEL [dm3] 3R_26620510_DEL [dm6]	CTATAAATAGGTA...	C	2.056e^-4	0.645	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7021362	3L_7021362_SNP [dm3] 3L_7028262_SNP [dm6]	G	T	2.058e^-4	0.645	INTRON Mp
3L	7021363	3L_7021363_SNP [dm3] 3L_7028263_SNP [dm6]	T	A	2.058e^-4	0.645	INTRON Mp
3L	7021364	3L_7021364_INS [dm3] 3L_7028264_INS [dm6]	T	TAG	2.058e^-4	0.645	INTRON Mp
3R	17430071	3R_17430071_INS [dm3] 3R_21604349_INS [dm6]	A	AA	2.062e^-4	0.645	INTRON InR	TF binding site BDTNP1_TFBS_dl
3L	14539892	3L_14539892_SNP [dm3] 3L_14546792_SNP [dm6]	T	A	2.069e^-4	0.645	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3L	12639207	3L_12639207_SNP [dm3] 3L_12646107_SNP [dm6]	A	T	2.070e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
X	3939086	X_3939086_DEL [dm3] X_4045053_DEL [dm6]	TT	T	2.071e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15479104	2L_15479104_SNP [dm3] 2L_15479104_SNP [dm6]	C	G	2.074e^-4	0.645	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3522907	2L_3522907_SNP [dm3] 2L_3522907_SNP [dm6]	G	T	2.077e^-4	0.645	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
X	11353543	X_11353543_SNP [dm3] X_11459510_SNP [dm6]	C	G	2.078e^-4	0.645	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3R	14564573	3R_14564573_SNP [dm3] 3R_18738851_SNP [dm6]	A	C	2.084e^-4	0.645	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12822920	2L_12822920_SNP [dm3] 2L_12822920_SNP [dm6]	A	G	2.090e^-4	0.645	UPSTREAM kek1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14559243	2R_14559243_SNP [dm3] 2R_18671738_SNP [dm6]	C	T	2.091e^-4	0.645	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14559246	2R_14559246_SNP [dm3] 2R_18671741_SNP [dm6]	T	G	2.091e^-4	0.645	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14559252	2R_14559252_SNP [dm3] 2R_18671747_SNP [dm6]	T	C	2.091e^-4	0.645	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17739998	2R_17739998_SNP [dm3] 2R_21852493_SNP [dm6]	T	G	2.093e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12073270	2R_12073270_SNP [dm3] 2R_16185765_SNP [dm6]	G	A	2.099e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12073273	2R_12073273_SNP [dm3] 2R_16185768_SNP [dm6]	T	G	2.099e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12073280	2R_12073280_SNP [dm3] 2R_16185775_SNP [dm6]	A	G	2.099e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12073283	2R_12073283_SNP [dm3] 2R_16185778_SNP [dm6]	A	T	2.099e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19613428	3R_19613428_SNP [dm3] 3R_23787706_SNP [dm6]	C	T	2.099e^-4	0.645	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2R	5186987	2R_5186987_SNP [dm3] 2R_9299482_SNP [dm6]	A	T	2.103e^-4	0.645	UTR_3_PRIME Drep-2	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26677213	3R_26677213_SNP [dm3] 3R_30851491_SNP [dm6]	T	C	2.114e^-4	0.645	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8305753	2R_8305753_SNP [dm3] 2R_12418248_SNP [dm6]	T	G	2.119e^-4	0.645	DOWNSTREAM CG42782 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	16457997	2R_16457997_SNP [dm3] 2R_20570492_SNP [dm6]	C	A	2.120e^-4	0.645	INTRON qsm	TF binding site BDTNP1_TFBS_prd
2L	1550988	2L_1550988_SNP [dm3] 2L_1550988_SNP [dm6]	C	A	2.143e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25161806	3R_25161806_SNP [dm3] 3R_29336084_SNP [dm6]	C	A	2.145e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11972370	2R_11972370_SNP [dm3] 2R_16084865_SNP [dm6]	A	G	2.149e^-4	0.645	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9499045	3L_9499045_SNP [dm3] 3L_9505945_SNP [dm6]	T	C	2.159e^-4	0.645	UPSTREAM path DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7001167	2R_7001167_SNP [dm3] 2R_11113662_SNP [dm6]	G	A	2.167e^-4	0.645	INTRON luna
3L	12480699	3L_12480699_SNP [dm3] 3L_12487599_SNP [dm6]	A	G	2.172e^-4	0.645	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26686256	3R_26686256_SNP [dm3] 3R_30860534_SNP [dm6]	C	T	2.176e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11137571	3L_11137571_SNP [dm3] 3L_11144471_SNP [dm6]	A	T	2.185e^-4	0.645	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26572949	3R_26572949_SNP [dm3] 3R_30747227_SNP [dm6]	T	G	2.191e^-4	0.645	UPSTREAM Npc2h & 1 other INTERGENIC
3L	13393391	3L_13393391_SNP [dm3] 3L_13400291_SNP [dm6]	C	A	2.208e^-4	0.645	NON_SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4840839	3L_4840839_SNP [dm3] 3L_4840839_SNP [dm6]	T	C	2.208e^-4	0.645	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5287533	3L_5287533_SNP [dm3] 3L_5294433_SNP [dm6]	T	C	2.208e^-4	0.645	INTERGENIC
3L	5702533	3L_5702533_SNP [dm3] 3L_5709433_SNP [dm6]	C	A	2.208e^-4	0.645	INTRON sif
3L	11391996	3L_11391996_INS [dm3] 3L_11398896_INS [dm6]	A	AA	2.211e^-4	0.645	INTERGENIC
3L	11391998	3L_11391998_SNP [dm3] 3L_11398898_SNP [dm6]	C	T	2.211e^-4	0.645	INTERGENIC
X	7060808	X_7060808_DEL [dm3] X_7166775_DEL [dm6]	GGCGGTAACAGCGACGTCGA...	G	2.223e^-4	0.645	DOWNSTREAM CR44357 INTRON CG9650 EXON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1632142	2L_1632142_SNP [dm3] 2L_1632142_SNP [dm6]	A	G	2.224e^-4	0.645	INTERGENIC
3R	10185630	3R_10185630_SNP [dm3] 3R_14359908_SNP [dm6]	G	A	2.228e^-4	0.645	SYNONYMOUS_CODING CG31320 INTRON NK7.1
X	17774480	X_17774480_SNP [dm3] X_17880447_SNP [dm6]	T	A	2.235e^-4	0.645	INTRON mnb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10091605	2R_10091605_SNP [dm3] 2R_14204100_SNP [dm6]	A	T	2.236e^-4	0.645	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7762572	2R_7762572_SNP [dm3] 2R_11875067_SNP [dm6]	T	G	2.239e^-4	0.645	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_cad
2R	7762656	2R_7762656_SNP [dm3] 2R_11875151_SNP [dm6]	A	G	2.239e^-4	0.645	SYNONYMOUS_CODING CG13185
2R	8375631	2R_8375631_SNP [dm3] 2R_12488126_SNP [dm6]	A	T	2.239e^-4	0.645	UTR_3_PRIME fdl UPSTREAM CG34234 DOWNSTREAM fdl & 1 other
3L	2922148	3L_2922148_SNP [dm3] 3L_2922148_SNP [dm6]	G	A	2.247e^-4	0.645	INTRON Shab
2L	13443273	2L_13443273_INS [dm3] 2L_13443273_INS [dm6]	C	CGAGC	2.263e^-4	0.645	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7265549	3L_7265549_SNP [dm3] 3L_7272449_SNP [dm6]	G	A	2.271e^-4	0.645	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
X	20771150	X_20771150_SNP [dm3] X_20900123_SNP [dm6]	G	A	2.278e^-4	0.645	INTRON shakB
2L	11395268	2L_11395268_SNP [dm3] 2L_11395268_SNP [dm6]	G	A	2.295e^-4	0.645	INTERGENIC	regulatory region REDfly_CRMs
2R	12852016	2R_12852016_SNP [dm3] 2R_16964511_SNP [dm6]	A	G	2.299e^-4	0.645	EXON CR44376
3R	15855370	3R_15855370_SNP [dm3] 3R_20029648_SNP [dm6]	A	G	2.301e^-4	0.645	UTR_3_PRIME trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25596644	3R_25596644_SNP [dm3] 3R_29770922_SNP [dm6]	A	C	2.304e^-4	0.645	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14203742	3R_14203742_SNP [dm3] 3R_18378020_SNP [dm6]	C	G	2.306e^-4	0.645	DOWNSTREAM CG7675 INTERGENIC
3L	845779	3L_845779_SNP [dm3] 3L_845779_SNP [dm6]	A	G	2.309e^-4	0.645	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
2R	12071850	2R_12071850_SNP [dm3] 2R_16184345_SNP [dm6]	T	C	2.312e^-4	0.645	UTR_3_PRIME Lis-1 DOWNSTREAM Lis-1 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9515747	2R_9515747_SNP [dm3] 2R_13628242_SNP [dm6]	A	G	2.312e^-4	0.645	INTRON fas
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	2.312e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18798624	3R_18798624_DEL [dm3] 3R_22972902_DEL [dm6]	AA	A	2.312e^-4	0.645	INTERGENIC
2R	3742392	2R_3742392_DEL [dm3] 2R_7854887_DEL [dm6]	AAA	A	2.313e^-4	0.645	INTRON Dgk
2L	11786385	2L_11786385_SNP [dm3] 2L_11786385_SNP [dm6]	C	T	2.330e^-4	0.645	INTERGENIC
2L	11786387	2L_11786387_SNP [dm3] 2L_11786387_SNP [dm6]	G	T	2.330e^-4	0.645	INTERGENIC
2L	13666628	2L_13666628_SNP [dm3] 2L_13666628_SNP [dm6]	C	A	2.330e^-4	0.645	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9991587	2L_9991587_INS [dm3] 2L_9991587_INS [dm6]	C	CCAATGGCCAC...	2.330e^-4	0.645	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16458556	2R_16458556_SNP [dm3] 2R_20571051_SNP [dm6]	T	C	2.337e^-4	0.645	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11391994	3L_11391994_SNP [dm3] 3L_11398894_SNP [dm6]	G	C	2.337e^-4	0.645	INTERGENIC
3R	23299613	3R_23299613_SNP [dm3] 3R_27473891_SNP [dm6]	G	T	2.340e^-4	0.645	INTERGENIC
X	14394666	X_14394666_SNP [dm3] X_14500633_SNP [dm6]	T	G	2.340e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14394680	X_14394680_SNP [dm3] X_14500647_SNP [dm6]	C	T	2.340e^-4	0.645	INTERGENIC
3R	15767689	3R_15767689_SNP [dm3] 3R_19941967_SNP [dm6]	C	T	2.341e^-4	0.645	INTRON Hs6st
X	10807399	X_10807399_SNP [dm3] X_10913366_SNP [dm6]	C	T	2.352e^-4	0.645	INTRON CG43901
X	1455065	X_1455065_SNP [dm3] X_1561032_SNP [dm6]	G	T	2.357e^-4	0.645	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6545421	2R_6545421_SNP [dm3] 2R_10657916_SNP [dm6]	T	C	2.369e^-4	0.645	UPSTREAM CR44452 INTERGENIC
2L	20905311	2L_20905311_SNP [dm3] 2L_20905311_SNP [dm6]	A	C	2.369e^-4	0.645	INTRON sky & 1 other
3L	7863864	3L_7863864_SNP [dm3] 3L_7870764_SNP [dm6]	G	A	2.375e^-4	0.645	INTRON CG32365
2L	3068193	2L_3068193_SNP [dm3] 2L_3068193_SNP [dm6]	A	T	2.377e^-4	0.645	DOWNSTREAM toc & 1 other INTERGENIC
X	10931279	X_10931279_SNP [dm3] X_11037246_SNP [dm6]	C	A	2.387e^-4	0.645	INTRON CG42339
3R	17702948	3R_17702948_SNP [dm3] 3R_21877226_SNP [dm6]	T	C	2.394e^-4	0.645	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14941299	3L_14941299_SNP [dm3] 3L_14948199_SNP [dm6]	C	T	2.402e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16345240	3R_16345240_SNP [dm3] 3R_20519518_SNP [dm6]	C	A	2.403e^-4	0.645	INTERGENIC
2R	7643503	2R_7643503_SNP [dm3] 2R_11755998_SNP [dm6]	G	T	2.410e^-4	0.645	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6293738	2R_6293738_SNP [dm3] 2R_10406233_SNP [dm6]	A	G	2.419e^-4	0.645	DOWNSTREAM CG12898 INTRON CG42732
2R	3568201	2R_3568201_SNP [dm3] 2R_7680696_SNP [dm6]	A	G	2.422e^-4	0.645	INTRON CG1399
2R	20371274	2R_20371274_SNP [dm3] 2R_24483751_SNP [dm6]	T	C	2.423e^-4	0.645	INTRON CG13579
3R	18798464	3R_18798464_SNP [dm3] 3R_22972742_SNP [dm6]	G	T	2.431e^-4	0.645	INTERGENIC
2L	3576388	2L_3576388_SNP [dm3] 2L_3576388_SNP [dm6]	T	C	2.435e^-4	0.645	NON_SYNONYMOUS_CODING CG43815 DOWNSTREAM CR43822
2R	14706525	2R_14706525_DEL [dm3] 2R_18819020_DEL [dm6]	TATATTCAT	T	2.436e^-4	0.645	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14706537	2R_14706537_SNP [dm3] 2R_18819032_SNP [dm6]	T	A	2.436e^-4	0.645	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4932866	3R_4932866_SNP [dm3] 3R_9107144_SNP [dm6]	A	G	2.451e^-4	0.645	INTRON pum
2L	15615918	2L_15615918_SNP [dm3] 2L_15615918_SNP [dm6]	A	G	2.455e^-4	0.645	SYNONYMOUS_CODING CG15253
3L	3981908	3L_3981908_SNP [dm3] 3L_3981908_SNP [dm6]	G	T	2.462e^-4	0.645	INTERGENIC	regulatory region REDfly_CRMs
2R	7724256	2R_7724256_SNP [dm3] 2R_11836751_SNP [dm6]	C	T	2.468e^-4	0.645	INTRON Sobp
3L	7863802	3L_7863802_SNP [dm3] 3L_7870702_SNP [dm6]	G	A	2.479e^-4	0.645	INTRON CG32365
2R	14348723	2R_14348723_SNP [dm3] 2R_18461218_SNP [dm6]	A	C	2.480e^-4	0.645	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17205918	3L_17205918_SNP [dm3] 3L_17212818_SNP [dm6]	T	A	2.485e^-4	0.645	INTRON Rbp6
3R	16498692	3R_16498692_SNP [dm3] 3R_20672970_SNP [dm6]	C	G	2.489e^-4	0.645	DOWNSTREAM Cpr92F INTERGENIC
3L	7299028	3L_7299028_SNP [dm3] 3L_7305928_SNP [dm6]	T	C	2.489e^-4	0.645	INTRON unc-13-4A
2L	15466646	2L_15466646_SNP [dm3] 2L_15466646_SNP [dm6]	T	C	2.495e^-4	0.645	INTERGENIC
2R	16777096	2R_16777096_SNP [dm3] 2R_20889591_SNP [dm6]	C	G	2.497e^-4	0.645	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20284757	3R_20284757_SNP [dm3] 3R_24459035_SNP [dm6]	C	A	2.506e^-4	0.645	INTERGENIC
X	18179640	X_18179640_SNP [dm3] X_18285607_SNP [dm6]	C	T	2.512e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	22998197	3R_22998197_SNP [dm3] 3R_27172475_SNP [dm6]	A	G	2.512e^-4	0.645	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
3L	14184848	3L_14184848_SNP [dm3] 3L_14191748_SNP [dm6]	C	A	2.512e^-4	0.645	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8494337	2R_8494337_SNP [dm3] 2R_12606832_SNP [dm6]	A	T	2.512e^-4	0.645	INTRON Amph
2R	13663170	2R_13663170_SNP [dm3] 2R_17775665_SNP [dm6]	G	A	2.516e^-4	0.645	INTRON fab1 & 1 other
3R	25489466	3R_25489466_SNP [dm3] 3R_29663744_SNP [dm6]	C	T	2.521e^-4	0.645	INTERGENIC
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	2.523e^-4	0.645	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10064473	2L_10064473_SNP [dm3] 2L_10064473_SNP [dm6]	G	T	2.530e^-4	0.645	UTR_3_PRIME CG44153 DOWNSTREAM Spn31A
3L	10418503	3L_10418503_SNP [dm3] 3L_10425403_SNP [dm6]	C	G	2.536e^-4	0.645	INTERGENIC
2L	12581443	2L_12581443_SNP [dm3] 2L_12581443_SNP [dm6]	T	A	2.543e^-4	0.645	UPSTREAM CR44596 & 1 other INTERGENIC
X	3971574	X_3971574_INS [dm3] X_4077541_INS [dm6]	A	ACCCCCAA	2.548e^-4	0.645	INTRON CG43689
3R	18931062	3R_18931062_SNP [dm3] 3R_23105340_SNP [dm6]	T	A	2.548e^-4	0.645	INTRON CG13830
3L	9242641	3L_9242641_SNP [dm3] 3L_9249541_SNP [dm6]	A	G	2.565e^-4	0.645	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3743708	2R_3743708_SNP [dm3] 2R_7856203_SNP [dm6]	G	T	2.589e^-4	0.645	INTRON Dgk
2R	3743755	2R_3743755_SNP [dm3] 2R_7856250_SNP [dm6]	C	T	2.589e^-4	0.645	INTRON Dgk
2R	7884971	2R_7884971_SNP [dm3] 2R_11997466_SNP [dm6]	G	T	2.596e^-4	0.645	INTERGENIC
3L	15467233	3L_15467233_DEL [dm3] 3L_15474133_DEL [dm6]	GTT	CG	2.605e^-4	0.645	UPSTREAM CG7804 INTERGENIC
3L	5281993	3L_5281993_INS [dm3] 3L_5288893_INS [dm6]	T	TT	2.605e^-4	0.645	INTERGENIC
2L	7012816	2L_7012816_SNP [dm3] 2L_7012816_SNP [dm6]	C	G	2.606e^-4	0.645	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
2R	8209713	2R_8209713_SNP [dm3] 2R_12322208_SNP [dm6]	G	A	2.609e^-4	0.645	UTR_3_PRIME CG13163 DOWNSTREAM CG8841
X	8523187	X_8523187_SNP [dm3] X_8629154_SNP [dm6]	A	T	2.616e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15410710	3L_15410710_SNP [dm3] 3L_15417610_SNP [dm6]	A	G	2.620e^-4	0.645	INTERGENIC
X	5719404	X_5719404_SNP [dm3] X_5825371_SNP [dm6]	C	T	2.622e^-4	0.645	INTRON CG15765
3R	8471511	3R_8471511_SNP [dm3] 3R_12645789_SNP [dm6]	G	A	2.634e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9543654	3L_9543654_SNP [dm3] 3L_9550554_SNP [dm6]	A	G	2.634e^-4	0.645	INTRON CG42673
3L	3702459	3L_3702459_SNP [dm3] 3L_3702459_SNP [dm6]	T	C	2.637e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15606968	3L_15606968_SNP [dm3] 3L_15613868_SNP [dm6]	T	A	2.638e^-4	0.645	SYNONYMOUS_CODING comm3
3R	26569833	3R_26569833_SNP [dm3] 3R_30744111_SNP [dm6]	G	A	2.640e^-4	0.645	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3R	26569837	3R_26569837_SNP [dm3] 3R_30744115_SNP [dm6]	T	G	2.640e^-4	0.645	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
2L	14462274	2L_14462274_SNP [dm3] 2L_14462274_SNP [dm6]	A	G	2.650e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	10345272	2L_10345272_SNP [dm3] 2L_10345272_SNP [dm6]	G	T	2.656e^-4	0.645	INTRON CG5022	TF binding site mE1_TFBS_HSA
X	5275635	X_5275635_SNP [dm3] X_5381602_SNP [dm6]	T	C	2.660e^-4	0.645	INTRON SK
3L	18852785	3L_18852785_SNP [dm3] 3L_18859685_SNP [dm6]	A	G	2.670e^-4	0.645	INTERGENIC
2L	11368053	2L_11368053_SNP [dm3] 2L_11368053_SNP [dm6]	C	A	2.682e^-4	0.645	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14441404	2L_14441404_SNP [dm3] 2L_14441404_SNP [dm6]	G	T	2.682e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15467460	2L_15467460_SNP [dm3] 2L_15467460_SNP [dm6]	T	A	2.682e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3853540	2L_3853540_SNP [dm3] 2L_3853540_SNP [dm6]	T	C	2.682e^-4	0.645	DOWNSTREAM CR45451 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5885638	2L_5885638_SNP [dm3] 2L_5885638_SNP [dm6]	T	C	2.685e^-4	0.645	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
3L	12639216	3L_12639216_SNP [dm3] 3L_12646116_SNP [dm6]	C	G	2.697e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
2R	12073288	2R_12073288_SNP [dm3] 2R_16185783_SNP [dm6]	C	T	2.698e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	18253758	2L_18253758_SNP [dm3] 2L_18253758_SNP [dm6]	A	T	2.701e^-4	0.645	INTRON CG42750
3L	2400210	3L_2400210_SNP [dm3] 3L_2400210_SNP [dm6]	T	G	2.705e^-4	0.645	UPSTREAM CG45186 INTRON CG45186
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	2.714e^-4	0.645	INTRON CG42389
3R	12945216	3R_12945216_DEL [dm3] 3R_17119494_DEL [dm6]	TT	T	2.715e^-4	0.645	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12945221	3R_12945221_SNP [dm3] 3R_17119499_SNP [dm6]	T	A	2.715e^-4	0.645	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	2.715e^-4	0.645	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
X	3484657	X_3484657_SNP [dm3] X_3590624_SNP [dm6]	T	A	2.719e^-4	0.645	INTRON AstA-R1
3R	17689564	3R_17689564_SNP [dm3] 3R_21863842_SNP [dm6]	T	G	2.720e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11992122	3R_11992122_SNP [dm3] 3R_16166400_SNP [dm6]	C	T	2.722e^-4	0.645	INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17323387	3L_17323387_SNP [dm3] 3L_17330287_SNP [dm6]	T	C	2.723e^-4	0.645	INTERGENIC
3R	18503814	3R_18503814_SNP [dm3] 3R_22678092_SNP [dm6]	C	T	2.726e^-4	0.645	INTRON CG45058	TF binding site mE1_TFBS_cad
2L	15743776	2L_15743776_SNP [dm3] 2L_15743776_SNP [dm6]	C	A	2.739e^-4	0.645	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	5469975	2L_5469975_SNP [dm3] 2L_5469975_SNP [dm6]	G	A	2.749e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15104981	2L_15104981_SNP [dm3] 2L_15104981_SNP [dm6]	T	A	2.749e^-4	0.645	INTERGENIC
2L	15630618	2L_15630618_SNP [dm3] 2L_15630618_SNP [dm6]	T	A	2.749e^-4	0.645	INTRON CG18480
2L	15647850	2L_15647850_SNP [dm3] 2L_15647850_SNP [dm6]	C	T	2.749e^-4	0.645	SYNONYMOUS_CODING CG4587
2L	15648037	2L_15648037_SNP [dm3] 2L_15648037_SNP [dm6]	C	T	2.749e^-4	0.645	INTRON CG4587
2L	15648147	2L_15648147_SNP [dm3] 2L_15648147_SNP [dm6]	T	G	2.749e^-4	0.645	SYNONYMOUS_CODING CG4587
2L	17567266	2L_17567266_SNP [dm3] 2L_17567266_SNP [dm6]	A	T	2.753e^-4	0.645	DOWNSTREAM mir-124 INTERGENIC
X	1464256	X_1464256_DEL [dm3] X_1570223_DEL [dm6]	ATATA	A	2.753e^-4	0.645	INTRON Mur2B
2R	7022480	2R_7022480_SNP [dm3] 2R_11134975_SNP [dm6]	G	A	2.755e^-4	0.645	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	8580570	3R_8580570_DEL [dm3] 3R_12754848_DEL [dm6]	TA	T	2.755e^-4	0.645	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5381899	2R_5381899_DEL [dm3] 2R_9494394_DEL [dm6]	ATTCGGCA	A	2.756e^-4	0.645	UTR_5_PRIME Wnt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16992336	3R_16992336_SNP [dm3] 3R_21166614_SNP [dm6]	A	G	2.761e^-4	0.645	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2R	13767652	2R_13767652_SNP [dm3] 2R_17880147_SNP [dm6]	A	T	2.768e^-4	0.645	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
3L	16329944	3L_16329944_SNP [dm3] 3L_16336844_SNP [dm6]	C	G	2.768e^-4	0.645	INTERGENIC
3R	13351921	3R_13351921_SNP [dm3] 3R_17526199_SNP [dm6]	G	T	2.768e^-4	0.645	INTERGENIC
3R	13362623	3R_13362623_DEL [dm3] 3R_17536901_DEL [dm6]	ATTA	A	2.768e^-4	0.645	UTR_3_PRIME P5cr-2 DOWNSTREAM l_3_07882
3R	13364672	3R_13364672_SNP [dm3] 3R_17538950_SNP [dm6]	G	T	2.768e^-4	0.645	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	22512995	3R_22512995_SNP [dm3] 3R_26687273_SNP [dm6]	A	G	2.768e^-4	0.645	INTERGENIC
3R	22513260	3R_22513260_SNP [dm3] 3R_26687538_SNP [dm6]	C	T	2.768e^-4	0.645	INTERGENIC
3R	22513261	3R_22513261_SNP [dm3] 3R_26687539_SNP [dm6]	C	T	2.768e^-4	0.645	INTERGENIC
3R	22526777	3R_22526777_SNP [dm3] 3R_26701055_SNP [dm6]	C	T	2.768e^-4	0.645	INTRON amon
3R	23297783	3R_23297783_SNP [dm3] 3R_27472061_SNP [dm6]	A	G	2.768e^-4	0.645	INTERGENIC
3R	23297804	3R_23297804_SNP [dm3] 3R_27472082_SNP [dm6]	A	T	2.768e^-4	0.645	INTERGENIC
3R	23297847	3R_23297847_SNP [dm3] 3R_27472125_SNP [dm6]	C	A	2.768e^-4	0.645	INTERGENIC
3R	23299208	3R_23299208_SNP [dm3] 3R_27473486_SNP [dm6]	T	G	2.768e^-4	0.645	INTERGENIC
3R	23299220	3R_23299220_SNP [dm3] 3R_27473498_SNP [dm6]	T	C	2.768e^-4	0.645	INTERGENIC
3R	23758000	3R_23758000_SNP [dm3] 3R_27932278_SNP [dm6]	G	C	2.768e^-4	0.645	SYNONYMOUS_CODING mino DOWNSTREAM Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13018896	3L_13018896_SNP [dm3] 3L_13025796_SNP [dm6]	C	A	2.774e^-4	0.645	SYNONYMOUS_CODING Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	2.777e^-4	0.645	INTRON dpr
2L	1113869	2L_1113869_SNP [dm3] 2L_1113869_SNP [dm6]	C	A	2.786e^-4	0.645	SYNONYMOUS_CODING CG14340 DOWNSTREAM Pino
2L	14463919	2L_14463919_SNP [dm3] 2L_14463919_SNP [dm6]	A	G	2.786e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10325812	2R_10325812_SNP [dm3] 2R_14438307_SNP [dm6]	T	C	2.792e^-4	0.645	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26419253	3R_26419253_SNP [dm3] 3R_30593531_SNP [dm6]	G	A	2.793e^-4	0.645	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14252455	2L_14252455_SNP [dm3] 2L_14252455_SNP [dm6]	G	A	2.796e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9313629	2L_9313629_SNP [dm3] 2L_9313629_SNP [dm6]	T	G	2.799e^-4	0.645	INTERGENIC
2L	10297990	2L_10297990_SNP [dm3] 2L_10297990_SNP [dm6]	A	T	2.802e^-4	0.645	INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	1648343	2L_1648343_DEL [dm3] 2L_1648343_DEL [dm6]	GG	G	2.811e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1183349	3L_1183349_SNP [dm3] 3L_1183349_SNP [dm6]	G	T	2.812e^-4	0.645	INTERGENIC
2R	12073279	2R_12073279_SNP [dm3] 2R_16185774_SNP [dm6]	T	A	2.828e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23446235	3R_23446235_SNP [dm3] 3R_27620513_SNP [dm6]	A	C	2.833e^-4	0.645	INTRON Tusp
3R	25489992	3R_25489992_SNP [dm3] 3R_29664270_SNP [dm6]	G	C	2.839e^-4	0.645	UPSTREAM ppk21 INTERGENIC
X	19630582	X_19630582_DEL [dm3] X_19736549_DEL [dm6]	TT	T	2.840e^-4	0.645	INTRON CG14234
3R	17388522	3R_17388522_SNP [dm3] 3R_21562800_SNP [dm6]	G	A	2.842e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_inv
3R	17388528	3R_17388528_SNP [dm3] 3R_21562806_SNP [dm6]	A	G	2.842e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_inv
2L	21874549	2L_21874549_SNP [dm3] 2L_21874549_SNP [dm6]	G	A	2.846e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24811996	3R_24811996_SNP [dm3] 3R_28986274_SNP [dm6]	T	C	2.862e^-4	0.645	INTERGENIC
2L	13725376	2L_13725376_DEL [dm3] 2L_13725376_DEL [dm6]	ATCAG	A	2.867e^-4	0.645	INTERGENIC
2L	14059846	2L_14059846_SNP [dm3] 2L_14059846_SNP [dm6]	A	C	2.867e^-4	0.645	INTRON nAChRalpha5
2L	14145390	2L_14145390_SNP [dm3] 2L_14145390_SNP [dm6]	G	T	2.867e^-4	0.645	INTRON CG17341
2L	6466522	2L_6466522_SNP [dm3] 2L_6466522_SNP [dm6]	G	T	2.867e^-4	0.645	UTR_3_PRIME CG9531 UPSTREAM CG16947
2L	5460749	2L_5460749_SNP [dm3] 2L_5460749_SNP [dm6]	A	T	2.868e^-4	0.645	UPSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18007693	3L_18007693_SNP [dm3] 3L_18014593_SNP [dm6]	G	A	2.870e^-4	0.645	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	21368047	3R_21368047_DEL [dm3] 3R_25542325_DEL [dm6]	TA	T	2.873e^-4	0.645	INTRON msi
3R	21368051	3R_21368051_MNP [dm3] 3R_25542329_MNP [dm6]	TTTGTTTT	GAAACACA	2.873e^-4	0.645	INTRON msi
2L	3727371	2L_3727371_SNP [dm3] 2L_3727371_SNP [dm6]	T	A	2.882e^-4	0.645	UTR_3_PRIME Shaw
2R	10995513	2R_10995513_SNP [dm3] 2R_15108008_SNP [dm6]	A	T	2.883e^-4	0.645	INTERGENIC
3L	17314214	3L_17314214_SNP [dm3] 3L_17321114_SNP [dm6]	T	C	2.886e^-4	0.645	UPSTREAM CG6485 INTERGENIC
3L	12566716	3L_12566716_SNP [dm3] 3L_12573616_SNP [dm6]	G	A	2.889e^-4	0.645	INTERGENIC
3R	23905314	3R_23905314_SNP [dm3] 3R_28079592_SNP [dm6]	G	T	2.902e^-4	0.645	INTRON CG34362
2R	6815760	2R_6815760_SNP [dm3] 2R_10928255_SNP [dm6]	A	C	2.920e^-4	0.645	INTERGENIC
3R	26569284	3R_26569284_SNP [dm3] 3R_30743562_SNP [dm6]	C	A	2.933e^-4	0.645	NON_SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8362340	2R_8362340_SNP [dm3] 2R_12474835_SNP [dm6]	A	G	2.940e^-4	0.645	DOWNSTREAM CG8550 INTRON Dh44-R2
2R	10325823	2R_10325823_SNP [dm3] 2R_14438318_SNP [dm6]	A	C	2.947e^-4	0.645	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16760508	2R_16760508_SNP [dm3] 2R_20873003_SNP [dm6]	A	G	2.948e^-4	0.645	INTRON Ipk1	TF binding site mE1_TFBS_cad
X	17957946	X_17957946_SNP [dm3] X_18063913_SNP [dm6]	T	A	2.948e^-4	0.645	UPSTREAM Sh & 1 other INTERGENIC
3R	26289817	3R_26289817_SNP [dm3] 3R_30464095_SNP [dm6]	A	T	2.951e^-4	0.645	SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7192016	2R_7192016_SNP [dm3] 2R_11304511_SNP [dm6]	G	A	2.952e^-4	0.645	NON_SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
X	3939548	X_3939548_SNP [dm3] X_4045515_SNP [dm6]	T	A	2.956e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10774199	3L_10774199_SNP [dm3] 3L_10781099_SNP [dm6]	C	T	2.959e^-4	0.645	INTERGENIC
2R	3742160	2R_3742160_SNP [dm3] 2R_7854655_SNP [dm6]	G	A	2.963e^-4	0.645	SYNONYMOUS_CODING Dgk
2R	3743460	2R_3743460_SNP [dm3] 2R_7855955_SNP [dm6]	G	A	2.963e^-4	0.645	INTRON Dgk
2R	3743872	2R_3743872_SNP [dm3] 2R_7856367_SNP [dm6]	A	G	2.963e^-4	0.645	INTRON Dgk
3R	23888090	3R_23888090_SNP [dm3] 3R_28062368_SNP [dm6]	C	T	2.968e^-4	0.645	INTRON CG34362
3L	9868412	3L_9868412_SNP [dm3] 3L_9875312_SNP [dm6]	A	G	2.983e^-4	0.645	UPSTREAM CR45406 INTERGENIC
3L	10418620	3L_10418620_SNP [dm3] 3L_10425520_SNP [dm6]	T	G	2.986e^-4	0.645	INTERGENIC
3R	7315345	3R_7315345_SNP [dm3] 3R_11489623_SNP [dm6]	G	A	2.986e^-4	0.645	INTERGENIC
3R	13539973	3R_13539973_SNP [dm3] 3R_17714251_SNP [dm6]	A	T	2.991e^-4	0.645	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13539979	3R_13539979_SNP [dm3] 3R_17714257_SNP [dm6]	C	G	2.991e^-4	0.645	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21797975	3R_21797975_SNP [dm3] 3R_25972253_SNP [dm6]	G	T	2.995e^-4	0.645	INTRON CG42261	TF binding site mE1_TFBS_HSA
2L	18882674	2L_18882674_SNP [dm3] 2L_18882674_SNP [dm6]	T	G	2.997e^-4	0.645	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1061028	X_1061028_SNP [dm3] X_1166995_SNP [dm6]	C	T	3.006e^-4	0.645	INTERGENIC
2L	11941921	2L_11941921_DEL [dm3] 2L_11941921_DEL [dm6]	TATATTCTCAT...	T	3.009e^-4	0.645	INTERGENIC	regulatory region REDfly_CRMs
3R	22992879	3R_22992879_SNP [dm3] 3R_27167157_SNP [dm6]	A	G	3.022e^-4	0.645	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs
3L	12860775	3L_12860775_SNP [dm3] 3L_12867675_SNP [dm6]	C	A	3.035e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3894551	2L_3894551_SNP [dm3] 2L_3894551_SNP [dm6]	T	C	3.042e^-4	0.645	INTRON capu
3R	24813614	3R_24813614_SNP [dm3] 3R_28987892_SNP [dm6]	G	A	3.043e^-4	0.645	INTERGENIC
3R	24372806	3R_24372806_SNP [dm3] 3R_28547084_SNP [dm6]	T	C	3.053e^-4	0.645	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	15906686	3R_15906686_SNP [dm3] 3R_20080964_SNP [dm6]	G	A	3.061e^-4	0.645	DOWNSTREAM Rh3 INTERGENIC
3R	15906687	3R_15906687_SNP [dm3] 3R_20080965_SNP [dm6]	T	A	3.061e^-4	0.645	DOWNSTREAM Rh3 INTERGENIC
2L	17255635	2L_17255635_SNP [dm3] 2L_17255635_SNP [dm6]	T	G	3.081e^-4	0.645	INTRON beat-IIIc
2L	8169993	2L_8169993_SNP [dm3] 2L_8169993_SNP [dm6]	T	C	3.087e^-4	0.645	INTRON Piezo
2L	9595605	2L_9595605_DEL [dm3] 2L_9595605_DEL [dm6]	TT	T	3.095e^-4	0.645	INTERGENIC	regulatory region REDfly_CRMs
3R	21595279	3R_21595279_SNP [dm3] 3R_25769557_SNP [dm6]	T	G	3.097e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21595285	3R_21595285_SNP [dm3] 3R_25769563_SNP [dm6]	T	C	3.097e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12637569	3L_12637569_SNP [dm3] 3L_12644469_SNP [dm6]	C	T	3.101e^-4	0.645	INTRON CR32111	regulatory region REDfly_CRMs
3L	12639341	3L_12639341_SNP [dm3] 3L_12646241_SNP [dm6]	T	C	3.101e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
2R	7326512	2R_7326512_SNP [dm3] 2R_11439007_SNP [dm6]	T	A	3.104e^-4	0.645	INTRON CG7777
3L	13018845	3L_13018845_SNP [dm3] 3L_13025745_SNP [dm6]	G	C	3.104e^-4	0.645	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM RpS12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9149471	2R_9149471_SNP [dm3] 2R_13261966_SNP [dm6]	C	A	3.105e^-4	0.645	UPSTREAM CG42319 INTRON CG42319
3L	11378310	3L_11378310_SNP [dm3] 3L_11385210_SNP [dm6]	T	A	3.109e^-4	0.645	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11378313	3L_11378313_SNP [dm3] 3L_11385213_SNP [dm6]	C	T	3.109e^-4	0.645	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13403408	2L_13403408_SNP [dm3] 2L_13403408_SNP [dm6]	C	T	3.115e^-4	0.645	INTRON CG7110	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7635068	3L_7635068_SNP [dm3] 3L_7641968_SNP [dm6]	G	A	3.115e^-4	0.645	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25225132	3R_25225132_INS [dm3] 3R_29399410_INS [dm6]	T	TGTGT	3.121e^-4	0.645	INTRON Ptp99A
X	6198784	X_6198784_SNP [dm3] X_6304751_SNP [dm6]	G	A	3.127e^-4	0.645	SYNONYMOUS_CODING CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10294004	3L_10294004_SNP [dm3] 3L_10300904_SNP [dm6]	G	A	3.131e^-4	0.645	INTERGENIC
2L	13477935	2L_13477935_SNP [dm3] 2L_13477935_SNP [dm6]	T	C	3.137e^-4	0.645	INTRON CG42784
2L	12111230	2L_12111230_SNP [dm3] 2L_12111230_SNP [dm6]	C	A	3.140e^-4	0.645	NON_SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
2R	8919049	2R_8919049_SNP [dm3] 2R_13031544_SNP [dm6]	A	G	3.140e^-4	0.645	INTERGENIC
3R	25489955	3R_25489955_SNP [dm3] 3R_29664233_SNP [dm6]	T	C	3.151e^-4	0.645	UPSTREAM ppk21 INTERGENIC
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	3.152e^-4	0.645	INTRON CG1213
3L	11391857	3L_11391857_SNP [dm3] 3L_11398757_SNP [dm6]	A	T	3.153e^-4	0.645	DOWNSTREAM CG44362 INTERGENIC
2R	16702778	2R_16702778_SNP [dm3] 2R_20815273_SNP [dm6]	G	A	3.172e^-4	0.645	INTERGENIC
2R	12418027	2R_12418027_SNP [dm3] 2R_16530522_SNP [dm6]	G	A	3.181e^-4	0.645	INTRON Sema-2a
3L	10266007	3L_10266007_SNP [dm3] 3L_10272907_SNP [dm6]	T	C	3.181e^-4	0.645	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	2676167	2L_2676167_INS [dm3] 2L_2676167_INS [dm6]	T	TAAATTCTTT	3.185e^-4	0.645	INTERGENIC
2L	8665824	2L_8665824_INS [dm3] 2L_8665824_INS [dm6]	T	TAT	3.196e^-4	0.645	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	11373821	3L_11373821_SNP [dm3] 3L_11380721_SNP [dm6]	A	G	3.207e^-4	0.645	INTERGENIC
2R	17231529	2R_17231529_SNP [dm3] 2R_21344024_SNP [dm6]	C	T	3.216e^-4	0.645	SYNONYMOUS_CODING CG15666
3R	15897412	3R_15897412_SNP [dm3] 3R_20071690_SNP [dm6]	T	C	3.219e^-4	0.645	INTERGENIC
3L	12639922	3L_12639922_SNP [dm3] 3L_12646822_SNP [dm6]	A	C	3.220e^-4	0.645	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12639923	3L_12639923_SNP [dm3] 3L_12646823_SNP [dm6]	C	A	3.220e^-4	0.645	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13508148	2R_13508148_SNP [dm3] 2R_17620643_SNP [dm6]	A	T	3.220e^-4	0.645	INTRON CG10936
2R	12409864	2R_12409864_SNP [dm3] 2R_16522359_SNP [dm6]	C	A	3.221e^-4	0.645	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
X	1157570	X_1157570_SNP [dm3] X_1263537_SNP [dm6]	T	G	3.222e^-4	0.645	INTRON Atf3
X	15735672	X_15735672_SNP [dm3] X_15841639_SNP [dm6]	A	T	3.224e^-4	0.645	DOWNSTREAM Aats-arg & 1 other INTERGENIC
2L	15650202	2L_15650202_SNP [dm3] 2L_15650202_SNP [dm6]	A	T	3.236e^-4	0.645	SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_inv
2R	13094984	2R_13094984_SNP [dm3] 2R_17207479_SNP [dm6]	T	G	3.244e^-4	0.645	INTERGENIC
3L	10418588	3L_10418588_SNP [dm3] 3L_10425488_SNP [dm6]	C	A	3.248e^-4	0.645	INTERGENIC
3R	16775418	3R_16775418_SNP [dm3] 3R_20949696_SNP [dm6]	G	T	3.258e^-4	0.645	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16775439	3R_16775439_SNP [dm3] 3R_20949717_SNP [dm6]	C	A	3.258e^-4	0.645	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20619541	3R_20619541_SNP [dm3] 3R_24793819_SNP [dm6]	A	C	3.258e^-4	0.645	INTRON Ets96B	TF binding site mE1_TFBS_cad
2R	15580079	2R_15580079_SNP [dm3] 2R_19692574_SNP [dm6]	T	C	3.270e^-4	0.645	EXON CR44506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13360868	3R_13360868_SNP [dm3] 3R_17535146_SNP [dm6]	A	T	3.272e^-4	0.645	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	22510872	3R_22510872_SNP [dm3] 3R_26685150_SNP [dm6]	G	A	3.272e^-4	0.645	INTERGENIC
3R	22510893	3R_22510893_SNP [dm3] 3R_26685171_SNP [dm6]	G	T	3.272e^-4	0.645	INTERGENIC
3R	22510906	3R_22510906_SNP [dm3] 3R_26685184_SNP [dm6]	A	C	3.272e^-4	0.645	INTERGENIC
2R	14978381	2R_14978381_INS [dm3] 2R_19090876_INS [dm6]	G	GCCGGCTATCGCCTTCGTCG...	3.275e^-4	0.645
2R	7814064	2R_7814064_SNP [dm3] 2R_11926559_SNP [dm6]	G	T	3.277e^-4	0.645	INTERGENIC
3L	10418509	3L_10418509_SNP [dm3] 3L_10425409_SNP [dm6]	T	A	3.277e^-4	0.645	INTERGENIC
3R	23983200	3R_23983200_SNP [dm3] 3R_28157478_SNP [dm6]	A	T	3.279e^-4	0.645	INTRON CG34354	TF binding site mE1_TFBS_inv
X	968367	X_968367_INS [dm3] X_1074334_INS [dm6]	T	TAT	3.283e^-4	0.645	UTR_3_PRIME CG3655 INTRON CR44779
X	18814039	X_18814039_SNP [dm3] X_18920006_SNP [dm6]	A	G	3.284e^-4	0.645	INTERGENIC
3R	6394648	3R_6394648_SNP [dm3] 3R_10568926_SNP [dm6]	T	A	3.284e^-4	0.645	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	3247706	2L_3247706_SNP [dm3] 2L_3247706_SNP [dm6]	T	C	3.285e^-4	0.645	INTERGENIC
2L	3247709	2L_3247709_DEL [dm3] 2L_3247709_DEL [dm6]	GC	G	3.285e^-4	0.645	INTERGENIC
2L	3247713	2L_3247713_SNP [dm3] 2L_3247713_SNP [dm6]	A	G	3.285e^-4	0.645	INTERGENIC
3R	15864116	3R_15864116_SNP [dm3] 3R_20038394_SNP [dm6]	T	A	3.286e^-4	0.645	UTR_3_PRIME CG17193
X	13132490	X_13132490_DEL [dm3] X_13238457_DEL [dm6]	CACCC	C	3.296e^-4	0.645	INTRON mew	TF binding site BDTNP1_TFBS_dl
3L	10579537	3L_10579537_SNP [dm3] 3L_10586437_SNP [dm6]	C	T	3.297e^-4	0.645	INTRON A2bp1
2L	10910615	2L_10910615_SNP [dm3] 2L_10910615_SNP [dm6]	T	A	3.299e^-4	0.645	UTR_5_PRIME CG14069 UPSTREAM CG14069
3R	26572983	3R_26572983_INS [dm3] 3R_30747261_INS [dm6]	A	AGAC	3.300e^-4	0.645	UPSTREAM Npc2h & 1 other INTERGENIC
X	1159617	X_1159617_SNP [dm3] X_1265584_SNP [dm6]	C	T	3.305e^-4	0.645	INTRON Atf3
3R	14203757	3R_14203757_SNP [dm3] 3R_18378035_SNP [dm6]	G	A	3.305e^-4	0.645	DOWNSTREAM CG7675 INTERGENIC
X	13327553	X_13327553_SNP [dm3] X_13433520_SNP [dm6]	A	G	3.306e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11363887	3L_11363887_SNP [dm3] 3L_11370787_SNP [dm6]	T	A	3.307e^-4	0.645	INTERGENIC
3R	10214041	3R_10214041_SNP [dm3] 3R_14388319_SNP [dm6]	C	A	3.310e^-4	0.645	INTERGENIC
2R	16702917	2R_16702917_SNP [dm3] 2R_20815412_SNP [dm6]	T	C	3.320e^-4	0.645	INTERGENIC
2R	16702942	2R_16702942_SNP [dm3] 2R_20815437_SNP [dm6]	C	A	3.320e^-4	0.645	INTERGENIC
X	11846986	X_11846986_SNP [dm3] X_11952953_SNP [dm6]	C	G	3.325e^-4	0.645	INTRON cac	TF binding site mE1_TFBS_HSA
2L	8665700	2L_8665700_SNP [dm3] 2L_8665700_SNP [dm6]	G	A	3.326e^-4	0.645	INTRON Sema-1a
3L	3960253	3L_3960253_SNP [dm3] 3L_3960253_SNP [dm6]	T	G	3.336e^-4	0.645	UPSTREAM CG12605 INTRON CG12605
3R	14393338	3R_14393338_SNP [dm3] 3R_18567616_SNP [dm6]	A	G	3.337e^-4	0.645	INTERGENIC
2R	13388154	2R_13388154_SNP [dm3] 2R_17500649_SNP [dm6]	A	G	3.337e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10039871	3R_10039871_SNP [dm3] 3R_14214149_SNP [dm6]	A	G	3.349e^-4	0.645	SYNONYMOUS_CODING Dop1R1
3R	25850577	3R_25850577_SNP [dm3] 3R_30024855_SNP [dm6]	A	T	3.374e^-4	0.645	INTRON Axn
3R	21895901	3R_21895901_SNP [dm3] 3R_26070179_SNP [dm6]	T	A	3.375e^-4	0.645	DOWNSTREAM CR44950 INTERGENIC
2R	78496	2R_78496_SNP [dm3] 2R_4190991_SNP [dm6]	A	T	3.384e^-4	0.645	INTERGENIC
3L	4685751	3L_4685751_SNP [dm3] 3L_4685751_SNP [dm6]	C	T	3.387e^-4	0.645	INTRON axo
X	4748920	X_4748920_SNP [dm3] X_4854887_SNP [dm6]	A	G	3.391e^-4	0.645	INTRON CG42594
2L	2949126	2L_2949126_SNP [dm3] 2L_2949126_SNP [dm6]	T	C	3.396e^-4	0.645	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
2L	17158772	2L_17158772_SNP [dm3] 2L_17158772_SNP [dm6]	A	G	3.396e^-4	0.645	INTRON beat-IIIa & 1 other
2L	17158898	2L_17158898_SNP [dm3] 2L_17158898_SNP [dm6]	T	A	3.396e^-4	0.645	INTRON beat-IIIa & 1 other
X	9599716	X_9599716_SNP [dm3] X_9705683_SNP [dm6]	T	A	3.415e^-4	0.645	INTERGENIC
3L	18652610	3L_18652610_SNP [dm3] 3L_18659510_SNP [dm6]	A	G	3.415e^-4	0.645	INTRON MYPT-75D
3R	21368041	3R_21368041_SNP [dm3] 3R_25542319_SNP [dm6]	T	G	3.416e^-4	0.645	INTRON msi
2L	11835974	2L_11835974_DEL [dm3] 2L_11835974_DEL [dm6]	TACAT	T	3.430e^-4	0.645	DOWNSTREAM CR45014 & 1 other INTRON Pde1c
2L	12686467	2L_12686467_SNP [dm3] 2L_12686467_SNP [dm6]	T	A	3.430e^-4	0.645	DOWNSTREAM pdm2 INTERGENIC
2L	2349650	2L_2349650_SNP [dm3] 2L_2349650_SNP [dm6]	A	G	3.430e^-4	0.645	INTRON CG9967 & 1 other
2L	3911750	2L_3911750_SNP [dm3] 2L_3911750_SNP [dm6]	T	G	3.430e^-4	0.645	DOWNSTREAM CG31773 INTRON fred
3R	13372362	3R_13372362_SNP [dm3] 3R_17546640_SNP [dm6]	A	T	3.430e^-4	0.645	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13539866	3R_13539866_SNP [dm3] 3R_17714144_SNP [dm6]	T	C	3.443e^-4	0.645	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22513398	3R_22513398_SNP [dm3] 3R_26687676_SNP [dm6]	C	A	3.451e^-4	0.645	INTERGENIC
3R	13539943	3R_13539943_INS [dm3] 3R_17714221_INS [dm6]	T	ACATGTG	3.461e^-4	0.645	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23297812	3R_23297812_SNP [dm3] 3R_27472090_SNP [dm6]	T	C	3.463e^-4	0.645	INTERGENIC
2L	14456068	2L_14456068_SNP [dm3] 2L_14456068_SNP [dm6]	T	G	3.464e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	14462233	2L_14462233_INS [dm3] 2L_14462233_INS [dm6]	C	CCTCAAAACAAGCC...	3.472e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3749674	2L_3749674_SNP [dm3] 2L_3749674_SNP [dm6]	C	A	3.485e^-4	0.645	INTRON CG10019
3R	26639903	3R_26639903_SNP [dm3] 3R_30814181_SNP [dm6]	A	G	3.498e^-4	0.645	INTRON cindr
3R	26242356	3R_26242356_SNP [dm3] 3R_30416634_SNP [dm6]	G	T	3.499e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16360787	3L_16360787_INS [dm3] 3L_16367687_INS [dm6]	G	GATTCAA	3.503e^-4	0.645	UPSTREAM Cpr72Ec & 1 other INTERGENIC
3R	13673346	3R_13673346_SNP [dm3] 3R_17847624_SNP [dm6]	G	T	3.506e^-4	0.645	INTRON tinc
3R	25117448	3R_25117448_SNP [dm3] 3R_29291726_SNP [dm6]	C	G	3.521e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25117489	3R_25117489_SNP [dm3] 3R_29291767_SNP [dm6]	G	T	3.521e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15266014	3R_15266014_DEL [dm3] 3R_19440292_DEL [dm6]	TTCAACGGCGA...	T	3.530e^-4	0.645	INTRON CG31221
3L	9868252	3L_9868252_SNP [dm3] 3L_9875152_SNP [dm6]	T	G	3.531e^-4	0.645	UPSTREAM CR45406 INTERGENIC
3L	6866176	3L_6866176_SNP [dm3] 3L_6873076_SNP [dm6]	T	G	3.537e^-4	0.645	INTERGENIC
3L	21422357	3L_21422357_SNP [dm3] 3L_21429257_SNP [dm6]	G	A	3.549e^-4	0.645	NON_SYNONYMOUS_CODING CG33288 INTRON barc
3R	13362630	3R_13362630_SNP [dm3] 3R_17536908_SNP [dm6]	T	G	3.566e^-4	0.645	UTR_3_PRIME P5cr-2 DOWNSTREAM l_3_07882
3R	13362631	3R_13362631_SNP [dm3] 3R_17536909_SNP [dm6]	T	A	3.566e^-4	0.645	UTR_3_PRIME P5cr-2 DOWNSTREAM l_3_07882
3R	13362632	3R_13362632_DEL [dm3] 3R_17536910_DEL [dm6]	ATA	A	3.566e^-4	0.645	UTR_3_PRIME P5cr-2 DOWNSTREAM l_3_07882
2L	5787460	2L_5787460_SNP [dm3] 2L_5787460_SNP [dm6]	G	A	3.569e^-4	0.645	INTRON CG9171
3L	13315737	3L_13315737_INS [dm3] 3L_13322637_INS [dm6]	T	TCTCTTTAATCTTTCTTTAT...	3.583e^-4	0.645	INTERGENIC
3L	7299038	3L_7299038_SNP [dm3] 3L_7305938_SNP [dm6]	T	C	3.587e^-4	0.645	INTRON unc-13-4A
2L	9638967	2L_9638967_SNP [dm3] 2L_9638967_SNP [dm6]	C	T	3.590e^-4	0.645	INTRON Apoltp
2L	11851867	2L_11851867_SNP [dm3] 2L_11851867_SNP [dm6]	G	A	3.594e^-4	0.645	SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
2R	14165472	2R_14165472_SNP [dm3] 2R_18277967_SNP [dm6]	G	T	3.611e^-4	0.645	SYNONYMOUS_CODING pen-2 UPSTREAM Ote DOWNSTREAM sbb	TF binding site mE1_TFBS_HSA
3R	18489299	3R_18489299_SNP [dm3] 3R_22663577_SNP [dm6]	G	A	3.613e^-4	0.645	INTRON CG45058
X	2372639	X_2372639_INS [dm3] X_2478606_INS [dm6]	T	TGTGTGTTTTT...	3.622e^-4	0.645	UTR_3_PRIME trol INTRON trol
X	2372642	X_2372642_DEL [dm3] X_2478609_DEL [dm6]	GT	G	3.622e^-4	0.645	UTR_3_PRIME trol INTRON trol
2L	15651794	2L_15651794_SNP [dm3] 2L_15651794_SNP [dm6]	C	T	3.627e^-4	0.645	INTRON CG4587
2L	15652157	2L_15652157_SNP [dm3] 2L_15652157_SNP [dm6]	A	T	3.627e^-4	0.645	INTRON CG4587
2L	18231648	2L_18231648_SNP [dm3] 2L_18231648_SNP [dm6]	C	T	3.628e^-4	0.645	INTRON CG42750
3R	17878848	3R_17878848_SNP [dm3] 3R_22053126_SNP [dm6]	C	A	3.630e^-4	0.645	INTRON how	TF binding site BDTNP1_TFBS_dl
3R	23727604	3R_23727604_SNP [dm3] 3R_27901882_SNP [dm6]	C	T	3.634e^-4	0.645	INTRON CG34353
3L	13904900	3L_13904900_SNP [dm3] 3L_13911800_SNP [dm6]	G	T	3.635e^-4	0.645	INTRON Rgl
3L	10418500	3L_10418500_SNP [dm3] 3L_10425400_SNP [dm6]	T	C	3.637e^-4	0.645	INTERGENIC
3R	26569478	3R_26569478_SNP [dm3] 3R_30743756_SNP [dm6]	G	T	3.644e^-4	0.645	NON_SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3R	26569490	3R_26569490_SNP [dm3] 3R_30743768_SNP [dm6]	T	G	3.644e^-4	0.645	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3L	16755738	3L_16755738_SNP [dm3] 3L_16762638_SNP [dm6]	C	A	3.651e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11378300	3L_11378300_SNP [dm3] 3L_11385200_SNP [dm6]	A	G	3.672e^-4	0.645	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1734911	2L_1734911_DEL [dm3] 2L_1734911_DEL [dm6]	ATCTTGGGA	A	3.686e^-4	0.645	INTRON CG17646
X	8100060	X_8100060_SNP [dm3] X_8206027_SNP [dm6]	G	A	3.686e^-4	0.645	INTRON sdt
2L	12428135	2L_12428135_SNP [dm3] 2L_12428135_SNP [dm6]	G	C	3.696e^-4	0.645	SPLICE_SITE_REGION CG6388 UPSTREAM CG5446 INTRON CG6388	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15124450	2L_15124450_SNP [dm3] 2L_15124450_SNP [dm6]	A	T	3.696e^-4	0.645	INTERGENIC
2L	15124455	2L_15124455_MNP [dm3] 2L_15124455_MNP [dm6]	AAG	GTT	3.696e^-4	0.645	INTERGENIC
2L	15124464	2L_15124464_SNP [dm3] 2L_15124464_SNP [dm6]	T	A	3.696e^-4	0.645	INTERGENIC
3L	9287361	3L_9287361_SNP [dm3] 3L_9294261_SNP [dm6]	A	G	3.705e^-4	0.645	INTERGENIC
3L	5165567	3L_5165567_SNP [dm3] 3L_5172467_SNP [dm6]	G	T	3.717e^-4	0.645	INTRON shep
3R	22880107	3R_22880107_SNP [dm3] 3R_27054385_SNP [dm6]	C	G	3.724e^-4	0.645	INTRON RYa-R
3R	21877353	3R_21877353_SNP [dm3] 3R_26051631_SNP [dm6]	G	A	3.726e^-4	0.645	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	19754918	3R_19754918_SNP [dm3] 3R_23929196_SNP [dm6]	G	C	3.729e^-4	0.645	UPSTREAM CG31142 & 2 others DOWNSTREAM Rpt2 INTERGENIC	TF binding site mE1_TFBS_ttk
2L	3033345	2L_3033345_SNP [dm3] 2L_3033345_SNP [dm6]	C	A	3.767e^-4	0.645	NON_SYNONYMOUS_CODING CG17258	TF binding site mE1_TFBS_chinmo
2L	12902975	2L_12902975_DEL [dm3] 2L_12902975_DEL [dm6]	AA	A	3.767e^-4	0.645	INTERGENIC
2L	13701349	2L_13701349_SNP [dm3] 2L_13701349_SNP [dm6]	A	T	3.767e^-4	0.645	INTRON CG31814
2L	2748786	2L_2748786_SNP [dm3] 2L_2748786_SNP [dm6]	C	A	3.767e^-4	0.645	START_GAINED Pgk UTR_5_PRIME Pgk UPSTREAM Pgk	TF binding site mE1_TFBS_HSA
2L	6038862	2L_6038862_SNP [dm3] 2L_6038862_SNP [dm6]	A	G	3.767e^-4	0.645	SYNONYMOUS_CODING CG31643 UPSTREAM CG9117	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	3106092	3R_3106092_SNP [dm3] 3R_7280370_SNP [dm6]	G	C	3.771e^-4	0.645	INTRON rn
2L	17169544	2L_17169544_SNP [dm3] 2L_17169544_SNP [dm6]	C	T	3.780e^-4	0.645	INTRON beat-IIIa & 1 other
2L	12581450	2L_12581450_SNP [dm3] 2L_12581450_SNP [dm6]	A	T	3.787e^-4	0.645	UPSTREAM CR44595 EXON CR44596
2L	12581456	2L_12581456_SNP [dm3] 2L_12581456_SNP [dm6]	A	G	3.787e^-4	0.645	UPSTREAM CR44595 EXON CR44596
3L	3893436	3L_3893436_SNP [dm3] 3L_3893436_SNP [dm6]	A	G	3.791e^-4	0.645	UPSTREAM snRNA:U11 INTRON Fie
2L	1146492	2L_1146492_SNP [dm3] 2L_1146492_SNP [dm6]	G	A	3.792e^-4	0.645	INTRON MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4896346	3L_4896346_SNP [dm3] 3L_4896346_SNP [dm6]	A	C	3.812e^-4	0.645	UPSTREAM CG13705 DOWNSTREAM CG17150 INTERGENIC
2R	18795543	2R_18795543_SNP [dm3] 2R_22908020_SNP [dm6]	G	A	3.819e^-4	0.645	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26803210	3R_26803210_SNP [dm3] 3R_30977488_SNP [dm6]	T	G	3.822e^-4	0.645	UTR_5_PRIME 5-HT7 INTRON 5-HT7
3R	16385902	3R_16385902_SNP [dm3] 3R_20560180_SNP [dm6]	A	C	3.822e^-4	0.645	UTR_5_PRIME CG15922 UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3139044	2L_3139044_SNP [dm3] 2L_3139044_SNP [dm6]	C	A	3.828e^-4	0.645	INTRON toc
2R	13094996	2R_13094996_SNP [dm3] 2R_17207491_SNP [dm6]	G	A	3.832e^-4	0.645	INTERGENIC
2R	13095017	2R_13095017_SNP [dm3] 2R_17207512_SNP [dm6]	T	G	3.832e^-4	0.645	INTERGENIC
2R	13095056	2R_13095056_SNP [dm3] 2R_17207551_SNP [dm6]	G	T	3.832e^-4	0.645	INTERGENIC
3R	14492477	3R_14492477_SNP [dm3] 3R_18666755_SNP [dm6]	G	A	3.839e^-4	0.645	SYNONYMOUS_CODING CG31231	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10158531	3R_10158531_SNP [dm3] 3R_14332809_SNP [dm6]	C	T	3.847e^-4	0.645	INTRON NK7.1
2L	7438444	2L_7438444_SNP [dm3] 2L_7438444_SNP [dm6]	G	A	3.859e^-4	0.645	INTRON CG5973	TF binding site BDTNP1_TFBS_dl
2R	18746038	2R_18746038_SNP [dm3] 2R_22858515_SNP [dm6]	C	A	3.859e^-4	0.645	INTRON inaD
2R	606557	2R_606557_SNP [dm3] 2R_4719052_SNP [dm6]	G	C	3.864e^-4	0.645	INTRON Nipped-B	transposable element FlyBase
X	1469587	X_1469587_SNP [dm3] X_1575554_SNP [dm6]	A	G	3.865e^-4	0.645	UTR_5_PRIME br INTRON Mur2B
3L	8777118	3L_8777118_DEL [dm3] 3L_8784018_DEL [dm6]	CCCAGTC	C	3.865e^-4	0.645	INTRON Fhos	TF binding site mE1_TFBS_cad
2L	10345235	2L_10345235_SNP [dm3] 2L_10345235_SNP [dm6]	T	G	3.871e^-4	0.645	INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7937890	3L_7937890_SNP [dm3] 3L_7944790_SNP [dm6]	A	G	3.872e^-4	0.645	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17567285	2L_17567285_SNP [dm3] 2L_17567285_SNP [dm6]	C	A	3.873e^-4	0.645	DOWNSTREAM mir-124 INTERGENIC
2L	10539401	2L_10539401_SNP [dm3] 2L_10539401_SNP [dm6]	G	A	3.874e^-4	0.645	INTERGENIC
3L	10294044	3L_10294044_INS [dm3] 3L_10300944_INS [dm6]	T	TCC	3.904e^-4	0.645	INTERGENIC
3L	10294048	3L_10294048_SNP [dm3] 3L_10300948_SNP [dm6]	T	A	3.904e^-4	0.645	INTERGENIC
2L	10298024	2L_10298024_SNP [dm3] 2L_10298024_SNP [dm6]	A	C	3.906e^-4	0.645	SPLICE_SITE_REGION CYLD SYNONYMOUS_CODING CYLD INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15519624	2L_15519624_SNP [dm3] 2L_15519624_SNP [dm6]	G	A	3.907e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8514687	2R_8514687_SNP [dm3] 2R_12627182_SNP [dm6]	C	A	3.908e^-4	0.645	INTRON CG17760
X	18196480	X_18196480_SNP [dm3] X_18302447_SNP [dm6]	G	C	3.909e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25493624	3R_25493624_SNP [dm3] 3R_29667902_SNP [dm6]	T	C	3.912e^-4	0.645	SYNONYMOUS_CODING ppk20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25493666	3R_25493666_SNP [dm3] 3R_29667944_SNP [dm6]	A	G	3.912e^-4	0.645	SPLICE_SITE_REGION ppk20 INTRON ppk20	TF binding site mE1_TFBS_cad
2R	16552619	2R_16552619_SNP [dm3] 2R_20665114_SNP [dm6]	G	A	3.920e^-4	0.645	INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18951704	2R_18951704_SNP [dm3] 2R_23064181_SNP [dm6]	A	T	3.923e^-4	0.645	NON_SYNONYMOUS_CODING CG9890 UPSTREAM PPO3	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	10931294	X_10931294_SNP [dm3] X_11037261_SNP [dm6]	G	A	3.928e^-4	0.645	INTRON CG42339
2R	12103349	2R_12103349_SNP [dm3] 2R_16215844_SNP [dm6]	C	T	3.929e^-4	0.645	INTRON mrj
X	11353562	X_11353562_DEL [dm3] X_11459529_DEL [dm6]	GG	G	3.937e^-4	0.645	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3L	8213352	3L_8213352_SNP [dm3] 3L_8220252_SNP [dm6]	T	A	3.940e^-4	0.645	INTERGENIC
2L	3297809	2L_3297809_SNP [dm3] 2L_3297809_SNP [dm6]	T	C	3.941e^-4	0.645	INTRON CG9663
3R	25478354	3R_25478354_SNP [dm3] 3R_29652632_SNP [dm6]	G	T	3.945e^-4	0.645	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	12926222	2L_12926222_SNP [dm3] 2L_12926222_SNP [dm6]	T	C	3.949e^-4	0.645	DOWNSTREAM ACXA INTRON ACXE
2L	13729558	2L_13729558_SNP [dm3] 2L_13729558_SNP [dm6]	T	C	3.949e^-4	0.645	INTERGENIC
2L	13730542	2L_13730542_SNP [dm3] 2L_13730542_SNP [dm6]	C	T	3.949e^-4	0.645	INTERGENIC
X	3484674	X_3484674_SNP [dm3] X_3590641_SNP [dm6]	G	C	3.960e^-4	0.645	INTRON AstA-R1
2R	8306096	2R_8306096_SNP [dm3] 2R_12418591_SNP [dm6]	T	C	3.971e^-4	0.645	DOWNSTREAM CG42782 & 1 other INTERGENIC
3L	9140626	3L_9140626_SNP [dm3] 3L_9147526_SNP [dm6]	C	T	3.972e^-4	0.645	UTR_3_PRIME Rdl	TF binding site mE1_TFBS_kn
3R	9975335	3R_9975335_SNP [dm3] 3R_14149613_SNP [dm6]	G	C	3.975e^-4	0.645	SYNONYMOUS_CODING CG14355
3L	9587572	3L_9587572_SNP [dm3] 3L_9594472_SNP [dm6]	A	T	3.976e^-4	0.645	UTR_3_PRIME CG42673 INTRON CG42673
X	14392678	X_14392678_SNP [dm3] X_14498645_SNP [dm6]	G	C	3.980e^-4	0.645	INTERGENIC
X	14392682	X_14392682_SNP [dm3] X_14498649_SNP [dm6]	A	T	3.980e^-4	0.645	INTERGENIC
X	14392683	X_14392683_SNP [dm3] X_14498650_SNP [dm6]	G	A	3.980e^-4	0.645	INTERGENIC
2L	11878478	2L_11878478_SNP [dm3] 2L_11878478_SNP [dm6]	G	A	3.984e^-4	0.645	INTRON Pde1c
2L	11925182	2L_11925182_INS [dm3] 2L_11925182_INS [dm6]	C	CTTGC	3.984e^-4	0.645	INTRON Pde1c
2L	12619682	2L_12619682_SNP [dm3] 2L_12619682_SNP [dm6]	G	A	3.984e^-4	0.645	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12891571	2L_12891571_SNP [dm3] 2L_12891571_SNP [dm6]	G	A	3.984e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12896751	2L_12896751_SNP [dm3] 2L_12896751_SNP [dm6]	A	T	3.984e^-4	0.645	INTERGENIC
2L	2707381	2L_2707381_SNP [dm3] 2L_2707381_SNP [dm6]	C	A	3.984e^-4	0.645	INTRON CG31690
2L	4121289	2L_4121289_SNP [dm3] 2L_4121289_SNP [dm6]	C	A	3.984e^-4	0.645	SYNONYMOUS_CODING Sr-CIII UPSTREAM Sr-CI
2L	5685015	2L_5685015_SNP [dm3] 2L_5685015_SNP [dm6]	A	G	3.984e^-4	0.645	INTERGENIC
2L	5819906	2L_5819906_SNP [dm3] 2L_5819906_SNP [dm6]	C	G	3.984e^-4	0.645	INTERGENIC
2L	5858672	2L_5858672_SNP [dm3] 2L_5858672_SNP [dm6]	C	T	3.984e^-4	0.645	INTERGENIC
2L	5996122	2L_5996122_SNP [dm3] 2L_5996122_SNP [dm6]	C	T	3.984e^-4	0.645	SYNONYMOUS_CODING lid	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11402935	3R_11402935_SNP [dm3] 3R_15577213_SNP [dm6]	G	A	3.984e^-4	0.645	INTERGENIC
X	17584434	X_17584434_DEL [dm3] X_17690401_DEL [dm6]	AA	A	3.987e^-4	0.645	INTRON chas
3L	12888776	3L_12888776_SNP [dm3] 3L_12895676_SNP [dm6]	T	C	3.989e^-4	0.645	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7376692	2R_7376692_SNP [dm3] 2R_11489187_SNP [dm6]	C	T	3.991e^-4	0.645	INTRON inv
3L	10902607	3L_10902607_SNP [dm3] 3L_10909507_SNP [dm6]	C	T	4.006e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17429683	3R_17429683_SNP [dm3] 3R_21603961_SNP [dm6]	C	A	4.006e^-4	0.645	INTRON InR	TF binding site mE1_TFBS_Trl
2R	7849481	2R_7849481_SNP [dm3] 2R_11961976_SNP [dm6]	G	C	4.008e^-4	0.645	INTRON CG13188
2R	7849519	2R_7849519_SNP [dm3] 2R_11962014_SNP [dm6]	A	T	4.008e^-4	0.645	INTRON CG13188
2R	7849579	2R_7849579_DEL [dm3] 2R_11962074_DEL [dm6]	ATCAAA	A	4.008e^-4	0.645	INTRON CG13188
X	15337435	X_15337435_SNP [dm3] X_15443402_SNP [dm6]	G	A	4.013e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12888764	3L_12888764_SNP [dm3] 3L_12895664_SNP [dm6]	T	A	4.022e^-4	0.645	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14695600	2L_14695600_SNP [dm3] 2L_14695600_SNP [dm6]	G	A	4.023e^-4	0.645	INTERGENIC
2L	1094440	2L_1094440_SNP [dm3] 2L_1094440_SNP [dm6]	C	G	4.035e^-4	0.645	INTRON CG4629
3L	3840700	3L_3840700_SNP [dm3] 3L_3840700_SNP [dm6]	G	A	4.044e^-4	0.645	UTR_3_PRIME enc
2L	21880354	2L_21880354_SNP [dm3] 2L_21880354_SNP [dm6]	A	T	4.049e^-4	0.645	INTERGENIC
X	10338933	X_10338933_INS [dm3] X_10444900_INS [dm6]	T	TTT	4.050e^-4	0.645	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2R	9120332	2R_9120332_DEL [dm3] 2R_13232827_DEL [dm6]	TTA	T	4.052e^-4	0.645	INTRON CG4670	TF binding site BDTNP1_TFBS_sna
3L	4012343	3L_4012343_SNP [dm3] 3L_4012343_SNP [dm6]	C	T	4.052e^-4	0.645	INTERGENIC
2L	6408656	2L_6408656_SNP [dm3] 2L_6408656_SNP [dm6]	G	T	4.069e^-4	0.645	INTRON CG42368	TF binding site mE1_TFBS_inv
2L	6408657	2L_6408657_SNP [dm3] 2L_6408657_SNP [dm6]	T	A	4.069e^-4	0.645	INTRON CG42368	TF binding site mE1_TFBS_inv
X	16785240	X_16785240_DEL [dm3] X_16891207_DEL [dm6]	TCAT	A	4.072e^-4	0.645	DOWNSTREAM CG13002 INTERGENIC
3L	904495	3L_904495_SNP [dm3] 3L_904495_SNP [dm6]	C	T	4.079e^-4	0.645	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4088787	3L_4088787_SNP [dm3] 3L_4088787_SNP [dm6]	C	A	4.080e^-4	0.645	UPSTREAM CG14989 & 1 other INTRON CG14989
3R	18162870	3R_18162870_SNP [dm3] 3R_22337148_SNP [dm6]	A	G	4.084e^-4	0.645	NON_SYNONYMOUS_CODING CG5388
3R	16204156	3R_16204156_SNP [dm3] 3R_20378434_SNP [dm6]	G	T	4.087e^-4	0.645	DOWNSTREAM Gfrl INTERGENIC
3R	13680469	3R_13680469_SNP [dm3] 3R_17854747_SNP [dm6]	G	T	4.089e^-4	0.645	INTRON tinc
2L	14972782	2L_14972782_SNP [dm3] 2L_14972782_SNP [dm6]	A	C	4.090e^-4	0.645	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	22281144	3R_22281144_SNP [dm3] 3R_26455422_SNP [dm6]	C	G	4.091e^-4	0.645	DOWNSTREAM Pdf & 2 others INTERGENIC
2R	17005920	2R_17005920_SNP [dm3] 2R_21118415_SNP [dm6]	C	T	4.091e^-4	0.645	UTR_5_PRIME CG9394 UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2L	17610004	2L_17610004_SNP [dm3] 2L_17610004_SNP [dm6]	C	T	4.093e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11869644	2L_11869644_SNP [dm3] 2L_11869644_SNP [dm6]	C	A	4.098e^-4	0.645	INTRON Pde1c
2R	8368276	2R_8368276_SNP [dm3] 2R_12480771_SNP [dm6]	G	C	4.101e^-4	0.645	SPLICE_SITE_REGION Dh44-R2 INTRON Dh44-R2
3R	3847688	3R_3847688_DEL [dm3] 3R_8021966_DEL [dm6]	AGTTTT	A	4.101e^-4	0.645	INTRON CG2747	TF binding site mE1_TFBS_cad
2L	7962961	2L_7962961_SNP [dm3] 2L_7962961_SNP [dm6]	T	C	4.102e^-4	0.645	INTRON Snoo
3R	22402423	3R_22402423_DEL [dm3] 3R_26576701_DEL [dm6]	AGAGTTAATGAA...	A	4.109e^-4	0.645	UTR_3_PRIME scrib INTRON scrib
3R	22402456	3R_22402456_SNP [dm3] 3R_26576734_SNP [dm6]	C	A	4.109e^-4	0.645	UTR_3_PRIME scrib INTRON scrib
2R	10193929	2R_10193929_SNP [dm3] 2R_14306424_SNP [dm6]	G	A	4.130e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12639209	3L_12639209_SNP [dm3] 3L_12646109_SNP [dm6]	T	C	4.136e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
2L	12686464	2L_12686464_SNP [dm3] 2L_12686464_SNP [dm6]	C	T	4.139e^-4	0.645	DOWNSTREAM pdm2 INTERGENIC
2L	15445166	2L_15445166_SNP [dm3] 2L_15445166_SNP [dm6]	C	T	4.150e^-4	0.645	INTERGENIC
2L	15445171	2L_15445171_SNP [dm3] 2L_15445171_SNP [dm6]	C	A	4.150e^-4	0.645	INTERGENIC
X	17957935	X_17957935_SNP [dm3] X_18063902_SNP [dm6]	A	C	4.158e^-4	0.645	UPSTREAM Sh & 1 other INTERGENIC
2L	16905005	2L_16905005_SNP [dm3] 2L_16905005_SNP [dm6]	T	G	4.165e^-4	0.645	INTRON tweek
3L	11137560	3L_11137560_SNP [dm3] 3L_11144460_SNP [dm6]	G	T	4.166e^-4	0.645	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7987415	2L_7987415_SNP [dm3] 2L_7987415_SNP [dm6]	T	A	4.168e^-4	0.645	UTR_3_PRIME pes DOWNSTREAM CG7231
3L	978993	3L_978993_SNP [dm3] 3L_978993_SNP [dm6]	G	A	4.170e^-4	0.645	INTRON Glut1
3L	13904901	3L_13904901_SNP [dm3] 3L_13911801_SNP [dm6]	G	T	4.173e^-4	0.645	INTRON Rgl
2R	17718553	2R_17718553_SNP [dm3] 2R_21831048_SNP [dm6]	A	G	4.174e^-4	0.645	INTRON CG13492
2R	14779070	2R_14779070_SNP [dm3] 2R_18891565_SNP [dm6]	T	C	4.175e^-4	0.645	INTRON sano
3R	17432280	3R_17432280_SNP [dm3] 3R_21606558_SNP [dm6]	G	A	4.175e^-4	0.645	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	22435005	3R_22435005_SNP [dm3] 3R_26609283_SNP [dm6]	T	A	4.175e^-4	0.645	DOWNSTREAM CR44951 INTERGENIC
X	14620841	X_14620841_SNP [dm3] X_14726808_SNP [dm6]	T	C	4.175e^-4	0.645	INTRON NetB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8464939	X_8464939_SNP [dm3] X_8570906_SNP [dm6]	G	A	4.175e^-4	0.645	NON_SYNONYMOUS_CODING CG12111 DOWNSTREAM spirit & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8464956	X_8464956_SNP [dm3] X_8570923_SNP [dm6]	C	T	4.175e^-4	0.645	UTR_5_PRIME CG12111 DOWNSTREAM spirit & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25489972	3R_25489972_SNP [dm3] 3R_29664250_SNP [dm6]	A	G	4.176e^-4	0.645	UPSTREAM ppk21 INTERGENIC
3R	25489987	3R_25489987_SNP [dm3] 3R_29664265_SNP [dm6]	T	A	4.176e^-4	0.645	UPSTREAM ppk21 INTERGENIC
3R	25490032	3R_25490032_SNP [dm3] 3R_29664310_SNP [dm6]	A	G	4.176e^-4	0.645	UPSTREAM ppk21 INTERGENIC
3R	25490035	3R_25490035_SNP [dm3] 3R_29664313_SNP [dm6]	G	A	4.176e^-4	0.645	UPSTREAM ppk21 INTERGENIC
2L	7292688	2L_7292688_SNP [dm3] 2L_7292688_SNP [dm6]	G	C	4.177e^-4	0.645	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11060767	3R_11060767_SNP [dm3] 3R_15235045_SNP [dm6]	G	C	4.183e^-4	0.645	NON_SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_da
2L	20474632	2L_20474632_SNP [dm3] 2L_20474632_SNP [dm6]	C	T	4.192e^-4	0.645	INTRON CR44980
2L	7524139	2L_7524139_DEL [dm3] 2L_7524139_DEL [dm6]	CCATTTTTTCAGCCACAAAA...	C	4.212e^-4	0.645	INTRON RapGAP1
2L	11941847	2L_11941847_SNP [dm3] 2L_11941847_SNP [dm6]	G	T	4.221e^-4	0.645	INTERGENIC
3R	16803914	3R_16803914_SNP [dm3] 3R_20978192_SNP [dm6]	C	T	4.222e^-4	0.645	UTR_5_PRIME Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9316207	3L_9316207_INS [dm3] 3L_9323107_INS [dm6]	C	CGGATCC	4.224e^-4	0.645	INTERGENIC
X	3924128	X_3924128_SNP [dm3] X_4030095_SNP [dm6]	T	C	4.234e^-4	0.645	INTERGENIC
3L	9868385	3L_9868385_SNP [dm3] 3L_9875285_SNP [dm6]	C	T	4.235e^-4	0.645	UPSTREAM CR45406 INTERGENIC
3L	9868393	3L_9868393_SNP [dm3] 3L_9875293_SNP [dm6]	T	C	4.235e^-4	0.645	UPSTREAM CR45406 INTERGENIC
2L	14469945	2L_14469945_SNP [dm3] 2L_14469945_SNP [dm6]	T	A	4.241e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	956035	X_956035_SNP [dm3] X_1062002_SNP [dm6]	C	A	4.247e^-4	0.645	INTRON CR44779	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	4401251	X_4401251_SNP [dm3] X_4507218_SNP [dm6]	T	C	4.250e^-4	0.645	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401260	X_4401260_INS [dm3] X_4507227_INS [dm6]	T	TCT	4.250e^-4	0.645	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401268	X_4401268_SNP [dm3] X_4507235_SNP [dm6]	T	A	4.250e^-4	0.645	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4401279	X_4401279_SNP [dm3] X_4507246_SNP [dm6]	T	A	4.250e^-4	0.645	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19894483	2R_19894483_SNP [dm3] 2R_24006960_SNP [dm6]	G	A	4.251e^-4	0.645	SPLICE_SITE_REGION Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	7742311	2L_7742311_SNP [dm3] 2L_7742311_SNP [dm6]	A	T	4.260e^-4	0.645	UPSTREAM Acp1 INTERGENIC
3L	10285907	3L_10285907_SNP [dm3] 3L_10292807_SNP [dm6]	G	T	4.262e^-4	0.645	INTERGENIC
X	11353590	X_11353590_SNP [dm3] X_11459557_SNP [dm6]	G	A	4.272e^-4	0.645	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3L	5628330	3L_5628330_SNP [dm3] 3L_5635230_SNP [dm6]	C	A	4.274e^-4	0.645	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	15854063	3R_15854063_SNP [dm3] 3R_20028341_SNP [dm6]	G	A	4.277e^-4	0.645	SPLICE_SITE_REGION CG4854 SYNONYMOUS_CODING CG4854 UPSTREAM CG4424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	15855398	3R_15855398_SNP [dm3] 3R_20029676_SNP [dm6]	G	C	4.277e^-4	0.645	NON_SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12686458	2L_12686458_SNP [dm3] 2L_12686458_SNP [dm6]	C	A	4.277e^-4	0.645	DOWNSTREAM pdm2 INTERGENIC
3R	25159028	3R_25159028_SNP [dm3] 3R_29333306_SNP [dm6]	G	A	4.281e^-4	0.645	INTERGENIC
2R	12072437	2R_12072437_SNP [dm3] 2R_16184932_SNP [dm6]	G	T	4.283e^-4	0.645	UTR_3_PRIME Lis-1 DOWNSTREAM Lis-1 & 1 other	TF binding site mE1_TFBS_HSA
2R	12072548	2R_12072548_SNP [dm3] 2R_16185043_SNP [dm6]	C	T	4.283e^-4	0.645	UTR_3_PRIME Lis-1 DOWNSTREAM CG8441	TF binding site mE1_TFBS_HSA
2R	12072555	2R_12072555_SNP [dm3] 2R_16185050_SNP [dm6]	C	T	4.283e^-4	0.645	UTR_3_PRIME Lis-1 DOWNSTREAM CG8441	TF binding site mE1_TFBS_HSA
X	21444922	X_21444922_SNP [dm3] X_21573895_SNP [dm6]	C	A	4.287e^-4	0.645	INTERGENIC
3R	19754899	3R_19754899_SNP [dm3] 3R_23929177_SNP [dm6]	G	T	4.290e^-4	0.645	UPSTREAM CG31142 & 2 others DOWNSTREAM Rpt2 INTERGENIC	TF binding site mE1_TFBS_ttk
2L	15616657	2L_15616657_SNP [dm3] 2L_15616657_SNP [dm6]	C	T	4.303e^-4	0.645	UPSTREAM CG11865 & 1 other INTERGENIC
3L	24530497	3L_24530497_SNP [dm3] 3L_24537398_SNP [dm6]	C	G	4.311e^-4	0.645	SPLICE_SITE_REGION mRpS5 UTR_5_PRIME mRpS5	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	4799068	3L_4799068_SNP [dm3] 3L_4799068_SNP [dm6]	C	A	4.312e^-4	0.645	UPSTREAM CR45740 INTERGENIC
X	5961245	X_5961245_SNP [dm3] X_6067212_SNP [dm6]	A	T	4.313e^-4	0.645	UPSTREAM CG43115 & 1 other INTERGENIC
X	5961248	X_5961248_SNP [dm3] X_6067215_SNP [dm6]	C	T	4.313e^-4	0.645	UPSTREAM CG43115 & 1 other INTERGENIC
2R	12073260	2R_12073260_SNP [dm3] 2R_16185755_SNP [dm6]	G	A	4.319e^-4	0.645	UPSTREAM clu DOWNSTREAM Lis-1 INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19673033	2R_19673033_SNP [dm3] 2R_23785510_SNP [dm6]	C	T	4.321e^-4	0.645	INTRON CG9850
2R	6816439	2R_6816439_SNP [dm3] 2R_10928934_SNP [dm6]	T	C	4.329e^-4	0.645	INTERGENIC
2L	12521039	2L_12521039_SNP [dm3] 2L_12521039_SNP [dm6]	A	T	4.330e^-4	0.645	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14978662	3R_14978662_SNP [dm3] 3R_19152940_SNP [dm6]	G	T	4.330e^-4	0.645	INTRON CG5835
3R	7203413	3R_7203413_SNP [dm3] 3R_11377691_SNP [dm6]	A	T	4.338e^-4	0.645	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14548468	3R_14548468_SNP [dm3] 3R_18722746_SNP [dm6]	C	G	4.345e^-4	0.645	UPSTREAM CG34283 INTRON Cha	transposable element FlyBase
3L	7540814	3L_7540814_INS [dm3] 3L_7547714_INS [dm6]	T	TA	4.350e^-4	0.645	INTERGENIC
2L	15630639	2L_15630639_INS [dm3] 2L_15630639_INS [dm6]	T	TT	4.351e^-4	0.645	INTRON CG18480
2L	17158979	2L_17158979_SNP [dm3] 2L_17158979_SNP [dm6]	T	C	4.359e^-4	0.645	INTRON beat-IIIa & 1 other
2R	14698619	2R_14698619_SNP [dm3] 2R_18811114_SNP [dm6]	C	T	4.366e^-4	0.645	INTRON CG15096
3R	25230067	3R_25230067_SNP [dm3] 3R_29404345_SNP [dm6]	G	T	4.369e^-4	0.645	INTRON Ptp99A
2L	10043910	2L_10043910_DEL [dm3] 2L_10043910_DEL [dm6]	CGGTCCACC	C	4.384e^-4	0.645	INTERGENIC
2L	2826145	2L_2826145_SNP [dm3] 2L_2826145_SNP [dm6]	T	C	4.392e^-4	0.645	UPSTREAM CG3123 INTRON Duox
2R	10805917	2R_10805917_SNP [dm3] 2R_14918412_SNP [dm6]	A	T	4.403e^-4	0.645	INTRON CG10249
X	11353588	X_11353588_SNP [dm3] X_11459555_SNP [dm6]	G	A	4.414e^-4	0.645	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3R	23727606	3R_23727606_DEL [dm3] 3R_27901884_DEL [dm6]	CTCA	C	4.421e^-4	0.645	INTRON CG34353
3L	4605467	3L_4605467_SNP [dm3] 3L_4605467_SNP [dm6]	A	T	4.424e^-4	0.645	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25326013	3R_25326013_SNP [dm3] 3R_29500291_SNP [dm6]	T	G	4.425e^-4	0.645	INTRON Trc8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	20128649	2R_20128649_DEL [dm3] 2R_24241126_DEL [dm6]	TATTTATTGCTA...	T	4.430e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20128661	2R_20128661_INS [dm3] 2R_24241138_INS [dm6]	T	TCCACGCA	4.430e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	2774803	2R_2774803_SNP [dm3] 2R_6887298_SNP [dm6]	G	C	4.437e^-4	0.645	NON_SYNONYMOUS_CODING Spn42De
3L	8677587	3L_8677587_SNP [dm3] 3L_8684487_SNP [dm6]	C	A	4.442e^-4	0.645	INTERGENIC
3R	22091590	3R_22091590_DEL [dm3] 3R_26265868_DEL [dm6]	AGGAACCCCCATCGTTCGTT...	A	4.447e^-4	0.645	INTRON CG6154
X	11199387	X_11199387_SNP [dm3] X_11305354_SNP [dm6]	C	T	4.449e^-4	0.645	INTERGENIC
X	5259013	X_5259013_SNP [dm3] X_5364980_SNP [dm6]	C	T	4.452e^-4	0.645	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
2R	13239105	2R_13239105_SNP [dm3] 2R_17351600_SNP [dm6]	A	G	4.458e^-4	0.645	INTRON mbl
3R	25513878	3R_25513878_SNP [dm3] 3R_29688156_SNP [dm6]	T	G	4.462e^-4	0.645	INTRON Obp99c
2L	7777884	2L_7777884_SNP [dm3] 2L_7777884_SNP [dm6]	A	G	4.469e^-4	0.645	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
2L	7777890	2L_7777890_SNP [dm3] 2L_7777890_SNP [dm6]	A	G	4.469e^-4	0.645	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
2L	19371146	2L_19371146_SNP [dm3] 2L_19371146_SNP [dm6]	C	T	4.480e^-4	0.645	SYNONYMOUS_CODING CG17349
X	14082704	X_14082704_SNP [dm3] X_14188671_SNP [dm6]	C	A	4.483e^-4	0.645	UPSTREAM CG11585 DOWNSTREAM CG12481 INTERGENIC
2R	19648258	2R_19648258_SNP [dm3] 2R_23760735_SNP [dm6]	A	G	4.488e^-4	0.645	INTRON CG9850
3L	9282968	3L_9282968_SNP [dm3] 3L_9289868_SNP [dm6]	G	A	4.489e^-4	0.645	INTERGENIC
3R	4504367	3R_4504367_SNP [dm3] 3R_8678645_SNP [dm6]	T	A	4.491e^-4	0.645	NON_SYNONYMOUS_CODING CG11755 DOWNSTREAM CG33325 & 1 other	TF binding site mE1_TFBS_cad
3R	25301074	3R_25301074_SNP [dm3] 3R_29475352_SNP [dm6]	T	C	4.497e^-4	0.645	INTRON Ptp99A
X	4979513	X_4979513_SNP [dm3] X_5085480_SNP [dm6]	A	G	4.498e^-4	0.645	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15867538	3L_15867538_SNP [dm3] 3L_15874438_SNP [dm6]	G	C	4.508e^-4	0.645	INTRON pHCl
3L	12639254	3L_12639254_SNP [dm3] 3L_12646154_SNP [dm6]	T	C	4.510e^-4	0.645	DOWNSTREAM CR32111 EXON CR32111
3R	13472988	3R_13472988_SNP [dm3] 3R_17647266_SNP [dm6]	A	C	4.511e^-4	0.645	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7727097	2L_7727097_SNP [dm3] 2L_7727097_SNP [dm6]	T	C	4.523e^-4	0.645	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
2L	10379201	2L_10379201_SNP [dm3] 2L_10379201_SNP [dm6]	C	A	4.524e^-4	0.645	UTR_3_PRIME dpr19 UPSTREAM gny
2L	10498759	2L_10498759_SNP [dm3] 2L_10498759_SNP [dm6]	G	A	4.524e^-4	0.645	INTRON Myo31DF
2L	11066067	2L_11066067_SNP [dm3] 2L_11066067_SNP [dm6]	G	T	4.524e^-4	0.645	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11066802	2L_11066802_SNP [dm3] 2L_11066802_SNP [dm6]	G	A	4.524e^-4	0.645	START_GAINED Samuel UTR_5_PRIME Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11128131	2L_11128131_SNP [dm3] 2L_11128131_SNP [dm6]	C	T	4.524e^-4	0.645	SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38	TF binding site mE1_TFBS_inv
2L	11155737	2L_11155737_SNP [dm3] 2L_11155737_SNP [dm6]	C	A	4.524e^-4	0.645	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11155757	2L_11155757_SNP [dm3] 2L_11155757_SNP [dm6]	C	T	4.524e^-4	0.645	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11155762	2L_11155762_SNP [dm3] 2L_11155762_SNP [dm6]	G	C	4.524e^-4	0.645	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11198525	2L_11198525_SNP [dm3] 2L_11198525_SNP [dm6]	T	A	4.524e^-4	0.645	INTRON Ca-beta
2L	11323938	2L_11323938_SNP [dm3] 2L_11323938_SNP [dm6]	G	A	4.524e^-4	0.645	INTERGENIC
2L	14104013	2L_14104013_SNP [dm3] 2L_14104013_SNP [dm6]	C	T	4.524e^-4	0.645	UPSTREAM CG16879 INTERGENIC
2L	14456100	2L_14456100_SNP [dm3] 2L_14456100_SNP [dm6]	T	C	4.524e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	14457767	2L_14457767_SNP [dm3] 2L_14457767_SNP [dm6]	C	A	4.524e^-4	0.645	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15647678	2L_15647678_SNP [dm3] 2L_15647678_SNP [dm6]	G	A	4.524e^-4	0.645	UTR_3_PRIME CG4587
2L	15647705	2L_15647705_SNP [dm3] 2L_15647705_SNP [dm6]	C	G	4.524e^-4	0.645	UTR_3_PRIME CG4587
2L	2685309	2L_2685309_SNP [dm3] 2L_2685309_SNP [dm6]	C	G	4.524e^-4	0.645	INTRON CG31690
2L	3083389	2L_3083389_SNP [dm3] 2L_3083389_SNP [dm6]	C	A	4.524e^-4	0.645	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3083403	2L_3083403_DEL [dm3] 2L_3083403_DEL [dm6]	CCCAAAATCATGCCTCTTTT...	C	4.524e^-4	0.645	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3083471	2L_3083471_SNP [dm3] 2L_3083471_SNP [dm6]	T	C	4.524e^-4	0.645	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3083482	2L_3083482_SNP [dm3] 2L_3083482_SNP [dm6]	C	T	4.524e^-4	0.645	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3121257	2L_3121257_SNP [dm3] 2L_3121257_SNP [dm6]	C	T	4.524e^-4	0.645	INTRON toc
2L	3121487	2L_3121487_SNP [dm3] 2L_3121487_SNP [dm6]	C	A	4.524e^-4	0.645	INTRON toc
2L	3275837	2L_3275837_SNP [dm3] 2L_3275837_SNP [dm6]	T	C	4.524e^-4	0.645	UTR_3_PRIME CG3332
2L	4814566	2L_4814566_SNP [dm3] 2L_4814566_SNP [dm6]	A	T	4.524e^-4	0.645	INTRON CG15629
2L	5064872	2L_5064872_SNP [dm3] 2L_5064872_SNP [dm6]	A	T	4.524e^-4	0.645	INTRON qtc	TF binding site mE1_TFBS_HSA
2L	5871780	2L_5871780_SNP [dm3] 2L_5871780_SNP [dm6]	G	A	4.524e^-4	0.645	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5918147	2L_5918147_SNP [dm3] 2L_5918147_SNP [dm6]	G	T	4.524e^-4	0.645	SYNONYMOUS_CODING bchs
2L	5918153	2L_5918153_SNP [dm3] 2L_5918153_SNP [dm6]	C	T	4.524e^-4	0.645	SYNONYMOUS_CODING bchs
2L	9113201	2L_9113201_SNP [dm3] 2L_9113201_SNP [dm6]	A	C	4.524e^-4	0.645	SYNONYMOUS_CODING Or30a
2L	9927128	2L_9927128_SNP [dm3] 2L_9927128_SNP [dm6]	G	A	4.524e^-4	0.645	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26760774	3R_26760774_SNP [dm3] 3R_30935052_SNP [dm6]	C	T	4.542e^-4	0.645	DOWNSTREAM CG15549 INTERGENIC
3L	554818	3L_554818_SNP [dm3] 3L_554818_SNP [dm6]	C	G	4.551e^-4	0.645	INTRON hipk
2L	2686095	2L_2686095_SNP [dm3] 2L_2686095_SNP [dm6]	G	A	4.551e^-4	0.645	INTRON CG31690
3L	7863764	3L_7863764_SNP [dm3] 3L_7870664_SNP [dm6]	C	A	4.564e^-4	0.645	INTRON CG32365
2L	16683479	2L_16683479_DEL [dm3] 2L_16683479_DEL [dm6]	AAGAATCAAGTTAAATAATA...	TG	4.566e^-4	0.645	DOWNSTREAM CG33552 INTRON grp & 1 other	TF binding site BDTNP1_TFBS_dl
3L	17312155	3L_17312155_SNP [dm3] 3L_17319055_SNP [dm6]	A	G	4.576e^-4	0.645	DOWNSTREAM CG6485 INTERGENIC
3L	4607265	3L_4607265_SNP [dm3] 3L_4607265_SNP [dm6]	C	T	4.577e^-4	0.645	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8443942	2R_8443942_SNP [dm3] 2R_12556437_SNP [dm6]	A	C	4.581e^-4	0.645	INTRON fra
2R	8443947	2R_8443947_SNP [dm3] 2R_12556442_SNP [dm6]	C	A	4.581e^-4	0.645	INTRON fra
2L	3284423	2L_3284423_SNP [dm3] 2L_3284423_SNP [dm6]	C	T	4.585e^-4	0.645	INTERGENIC
2L	19337283	2L_19337283_SNP [dm3] 2L_19337283_SNP [dm6]	G	A	4.590e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	11367930	2L_11367930_SNP [dm3] 2L_11367930_SNP [dm6]	G	C	4.601e^-4	0.645	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1380276	X_1380276_SNP [dm3] X_1486243_SNP [dm6]	C	G	4.610e^-4	0.645	UTR_3_PRIME Nmdar2 INTRON inc
3R	10527907	3R_10527907_SNP [dm3] 3R_14702185_SNP [dm6]	A	G	4.610e^-4	0.645	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20908848	2L_20908848_SNP [dm3] 2L_20908848_SNP [dm6]	T	A	4.622e^-4	0.645	INTRON sky & 1 other
3L	10393094	3L_10393094_SNP [dm3] 3L_10399994_SNP [dm6]	A	G	4.623e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17885642	2R_17885642_SNP [dm3] 2R_21998137_SNP [dm6]	T	C	4.628e^-4	0.645	INTRON CG34370
X	3484682	X_3484682_SNP [dm3] X_3590649_SNP [dm6]	A	C	4.636e^-4	0.645	INTRON AstA-R1
2L	20908835	2L_20908835_SNP [dm3] 2L_20908835_SNP [dm6]	T	A	4.637e^-4	0.645	INTRON sky & 1 other
3R	21844990	3R_21844990_SNP [dm3] 3R_26019268_SNP [dm6]	T	G	4.638e^-4	0.645	EXON CR43643	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6230286	2R_6230286_SNP [dm3] 2R_10342781_SNP [dm6]	C	A	4.640e^-4	0.645	INTRON CG42732
3R	25389653	3R_25389653_SNP [dm3] 3R_29563931_SNP [dm6]	A	G	4.644e^-4	0.645	INTRON Dr	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11060372	3R_11060372_SNP [dm3] 3R_15234650_SNP [dm6]	G	A	4.649e^-4	0.645	SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11061552	3R_11061552_SNP [dm3] 3R_15235830_SNP [dm6]	G	C	4.649e^-4	0.645	NON_SYNONYMOUS_CODING tefu
3R	25161815	3R_25161815_SNP [dm3] 3R_29336093_SNP [dm6]	C	T	4.650e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4011036	2L_4011036_DEL [dm3] 2L_4011036_DEL [dm6]	CTG	T	4.658e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20193247	3R_20193247_SNP [dm3] 3R_24367525_SNP [dm6]	G	T	4.658e^-4	0.645	UPSTREAM CG42811 & 1 other INTRON CG42812
3R	25665593	3R_25665593_SNP [dm3] 3R_29839871_SNP [dm6]	C	T	4.681e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6418890	2L_6418890_SNP [dm3] 2L_6418890_SNP [dm6]	G	T	4.689e^-4	0.645	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6422015	2L_6422015_SNP [dm3] 2L_6422015_SNP [dm6]	C	G	4.689e^-4	0.645	INTRON Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15465532	2L_15465532_SNP [dm3] 2L_15465532_SNP [dm6]	G	A	4.691e^-4	0.645	INTERGENIC
2L	16840276	2L_16840276_SNP [dm3] 2L_16840276_SNP [dm6]	G	C	4.691e^-4	0.645	UTR_5_PRIME SclB UTR_3_PRIME SclA INTRON SclA
2L	6695768	2L_6695768_SNP [dm3] 2L_6695768_SNP [dm6]	G	T	4.691e^-4	0.645	INTRON Tsp
2L	9126707	2L_9126707_SNP [dm3] 2L_9126707_SNP [dm6]	A	G	4.691e^-4	0.645	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	10354818	2R_10354818_SNP [dm3] 2R_14467313_SNP [dm6]	T	C	4.691e^-4	0.645	INTERGENIC
2R	14689726	2R_14689726_INS [dm3] 2R_18802221_INS [dm6]	A	AGT	4.691e^-4	0.645	UTR_5_PRIME l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14713766	2R_14713766_SNP [dm3] 2R_18826261_SNP [dm6]	G	A	4.691e^-4	0.645	UPSTREAM CG15097 INTRON CG15097
2R	14715161	2R_14715161_MNP [dm3] 2R_18827656_MNP [dm6]	TTC	GAA	4.691e^-4	0.645	INTRON CG15097
2R	20219487	2R_20219487_SNP [dm3] 2R_24331964_SNP [dm6]	T	A	4.691e^-4	0.645	UTR_3_PRIME slbo
2R	20747649	2R_20747649_SNP [dm3] 2R_24860126_SNP [dm6]	T	C	4.691e^-4	0.645	EXON CR44829
2R	8343963	2R_8343963_DEL [dm3] 2R_12456458_DEL [dm6]	TGCCCATTGAGGA...	G	4.691e^-4	0.645	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8350195	2R_8350195_SNP [dm3] 2R_12462690_SNP [dm6]	T	C	4.691e^-4	0.645	INTRON Lac
2R	8350802	2R_8350802_SNP [dm3] 2R_12463297_SNP [dm6]	T	G	4.691e^-4	0.645	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	8350807	2R_8350807_SNP [dm3] 2R_12463302_SNP [dm6]	A	C	4.691e^-4	0.645	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	8353587	2R_8353587_SNP [dm3] 2R_12466082_SNP [dm6]	C	T	4.691e^-4	0.645	DOWNSTREAM Lac INTRON dgt5	TF binding site mE1_TFBS_cad
2R	8355777	2R_8355777_SNP [dm3] 2R_12468272_SNP [dm6]	T	C	4.691e^-4	0.645	UPSTREAM CG8545 & 1 other INTRON dgt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8356930	2R_8356930_SNP [dm3] 2R_12469425_SNP [dm6]	A	C	4.691e^-4	0.645	NON_SYNONYMOUS_CODING CG8545 INTRON dgt5	TF binding site mE1_TFBS_sens
2R	8358745	2R_8358745_SNP [dm3] 2R_12471240_SNP [dm6]	C	A	4.691e^-4	0.645	NON_SYNONYMOUS_CODING CG8545 UPSTREAM CG8550 INTRON dgt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8361293	2R_8361293_SNP [dm3] 2R_12473788_SNP [dm6]	C	A	4.691e^-4	0.645	NON_SYNONYMOUS_CODING CG8550 UPSTREAM Dh44-R2	TF binding site mE1_TFBS_Trl
2R	8374813	2R_8374813_SNP [dm3] 2R_12487308_SNP [dm6]	T	C	4.691e^-4	0.645	UTR_3_PRIME Dh44-R2 DOWNSTREAM fdl & 1 other INTRON CG34234
3L	3767125	3L_3767125_SNP [dm3] 3L_3767125_SNP [dm6]	G	A	4.691e^-4	0.645	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	3767127	3L_3767127_SNP [dm3] 3L_3767127_SNP [dm6]	C	A	4.691e^-4	0.645	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	3767130	3L_3767130_SNP [dm3] 3L_3767130_SNP [dm6]	C	A	4.691e^-4	0.645	SPLICE_SITE_REGION CG32264 INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	4029085	3L_4029085_SNP [dm3] 3L_4029085_SNP [dm6]	T	C	4.691e^-4	0.645	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c DOWNSTREAM Gr64a
3L	5283767	3L_5283767_SNP [dm3] 3L_5290667_SNP [dm6]	G	A	4.691e^-4	0.645	INTERGENIC
3L	5284650	3L_5284650_SNP [dm3] 3L_5291550_SNP [dm6]	T	C	4.691e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7323628	3L_7323628_SNP [dm3] 3L_7330528_SNP [dm6]	C	T	4.691e^-4	0.645	SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307 DOWNSTREAM CG42307	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7996528	3L_7996528_SNP [dm3] 3L_8003428_SNP [dm6]	C	T	4.691e^-4	0.645	INTRON nmo
3L	7996586	3L_7996586_SNP [dm3] 3L_8003486_SNP [dm6]	C	T	4.691e^-4	0.645	INTRON nmo
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	4.691e^-4	0.645	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	961628	3L_961628_SNP [dm3] 3L_961628_SNP [dm6]	G	A	4.691e^-4	0.645	INTRON Glut1
3R	13530647	3R_13530647_SNP [dm3] 3R_17704925_SNP [dm6]	G	A	4.691e^-4	0.645	INTRON osa
3R	16186933	3R_16186933_SNP [dm3] 3R_20361211_SNP [dm6]	T	C	4.691e^-4	0.645	DOWNSTREAM CR45023 & 1 other INTERGENIC
3R	18166816	3R_18166816_SNP [dm3] 3R_22341094_SNP [dm6]	T	C	4.691e^-4	0.645	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
3R	18739557	3R_18739557_SNP [dm3] 3R_22913835_SNP [dm6]	G	T	4.691e^-4	0.645	INTRON klg
3R	18741878	3R_18741878_SNP [dm3] 3R_22916156_SNP [dm6]	T	C	4.691e^-4	0.645	INTRON klg
3R	18742274	3R_18742274_SNP [dm3] 3R_22916552_SNP [dm6]	T	C	4.691e^-4	0.645	INTRON klg

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.149e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.0407

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	4.5412	0.0331

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1620 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22712101	3R_22712101_SNP [dm3] 3R_26886379_SNP [dm6]	T	G	9.107e^-7	0.942	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4437687	3L_4437687_SNP [dm3] 3L_4437687_SNP [dm6]	A	T	1.479e^-6	0.942	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3R	13360523	3R_13360523_INS [dm3] 3R_17534801_INS [dm6]	G	GGTAAATTAAG...	2.247e^-6	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	4816895	3L_4816895_SNP [dm3] 3L_4816895_SNP [dm6]	G	A	3.540e^-6	0.942	INTRON Dhc64C
3R	11066620	3R_11066620_SNP [dm3] 3R_15240898_SNP [dm6]	A	G	3.656e^-6	0.942	SYNONYMOUS_CODING tefu
3L	4816839	3L_4816839_SNP [dm3] 3L_4816839_SNP [dm6]	G	A	4.613e^-6	0.942	INTRON Dhc64C
2L	9638967	2L_9638967_SNP [dm3] 2L_9638967_SNP [dm6]	C	T	5.517e^-6	0.942	INTRON Apoltp
3L	4816877	3L_4816877_SNP [dm3] 3L_4816877_SNP [dm6]	G	T	7.007e^-6	0.942	INTRON Dhc64C
3L	4816882	3L_4816882_SNP [dm3] 3L_4816882_SNP [dm6]	T	C	7.007e^-6	0.942	INTRON Dhc64C
X	16785092	X_16785092_SNP [dm3] X_16891059_SNP [dm6]	C	T	8.381e^-6	0.942	DOWNSTREAM CG13002 INTERGENIC
3L	4816896	3L_4816896_SNP [dm3] 3L_4816896_SNP [dm6]	T	C	9.149e^-6	0.942	INTRON Dhc64C
3R	7764012	3R_7764012_SNP [dm3] 3R_11938290_SNP [dm6]	C	T	9.472e^-6	0.942	INTRON Cad87A
3L	4816840	3L_4816840_SNP [dm3] 3L_4816840_SNP [dm6]	G	A	1.065e^-5	0.942	INTRON Dhc64C
3R	13360465	3R_13360465_SNP [dm3] 3R_17534743_SNP [dm6]	T	A	1.132e^-5	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	19926037	3R_19926037_SNP [dm3] 3R_24100315_SNP [dm6]	C	A	1.150e^-5	0.942	INTRON 4EHP
3R	10039792	3R_10039792_SNP [dm3] 3R_14214070_SNP [dm6]	G	A	1.165e^-5	0.942	SYNONYMOUS_CODING Dop1R1
3R	3861686	3R_3861686_SNP [dm3] 3R_8035964_SNP [dm6]	T	C	1.284e^-5	0.942	SYNONYMOUS_CODING unc-45
3R	3862288	3R_3862288_SNP [dm3] 3R_8036566_SNP [dm6]	A	T	1.284e^-5	0.942	UTR_3_PRIME unc-45
3R	15794958	3R_15794958_INS [dm3] 3R_19969236_INS [dm6]	T	TCGTTTAAGTT...	1.361e^-5	0.942	INTRON Hs6st
3L	12405643	3L_12405643_SNP [dm3] 3L_12412543_SNP [dm6]	T	A	1.394e^-5	0.942	INTRON CG32103
3R	13360951	3R_13360951_SNP [dm3] 3R_17535229_SNP [dm6]	A	C	1.425e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	15794882	3R_15794882_SNP [dm3] 3R_19969160_SNP [dm6]	T	C	1.637e^-5	0.942	INTRON Hs6st
3R	24384413	3R_24384413_SNP [dm3] 3R_28558691_SNP [dm6]	G	T	1.735e^-5	0.942	INTERGENIC
3R	24384414	3R_24384414_SNP [dm3] 3R_28558692_SNP [dm6]	C	T	1.735e^-5	0.942	INTERGENIC
2L	6325352	2L_6325352_SNP [dm3] 2L_6325352_SNP [dm6]	A	C	1.865e^-5	0.942	SPLICE_SITE_REGION PDZ-GEF INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4850465	X_4850465_SNP [dm3] X_4956432_SNP [dm6]	G	T	1.872e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	1.991e^-5	0.942	INTRON CG31191
3R	11819478	3R_11819478_SNP [dm3] 3R_15993756_SNP [dm6]	C	T	2.050e^-5	0.942	UPSTREAM srp DOWNSTREAM CR44133 INTRON srp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	10039871	3R_10039871_SNP [dm3] 3R_14214149_SNP [dm6]	A	G	2.162e^-5	0.942	SYNONYMOUS_CODING Dop1R1
3L	14192256	3L_14192256_SNP [dm3] 3L_14199156_SNP [dm6]	A	G	2.287e^-5	0.942	INTRON nuf
2L	20503000	2L_20503000_SNP [dm3] 2L_20503000_SNP [dm6]	C	T	2.367e^-5	0.942	INTERGENIC
3R	19828734	3R_19828734_SNP [dm3] 3R_24003012_SNP [dm6]	A	G	2.377e^-5	0.942	INTRON KrT95D
3R	13360932	3R_13360932_SNP [dm3] 3R_17535210_SNP [dm6]	C	T	2.393e^-5	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2R	11569327	2R_11569327_SNP [dm3] 2R_15681822_SNP [dm6]	A	G	2.558e^-5	0.942	NON_SYNONYMOUS_CODING CG30091 UPSTREAM Ranbp11 DOWNSTREAM CR43429	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12033683	2R_12033683_SNP [dm3] 2R_16146178_SNP [dm6]	A	C	2.723e^-5	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3R	16763353	3R_16763353_SNP [dm3] 3R_20937631_SNP [dm6]	T	C	2.763e^-5	0.942	INTRON CG31191
3R	9853016	3R_9853016_SNP [dm3] 3R_14027294_SNP [dm6]	C	T	2.861e^-5	0.942	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11819375	3R_11819375_SNP [dm3] 3R_15993653_SNP [dm6]	G	A	2.872e^-5	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	25588602	3R_25588602_SNP [dm3] 3R_29762880_SNP [dm6]	T	C	3.135e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	11814577	3L_11814577_SNP [dm3] 3L_11821477_SNP [dm6]	A	T	3.159e^-5	0.942	UTR_5_PRIME CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16702917	2R_16702917_SNP [dm3] 2R_20815412_SNP [dm6]	T	C	3.323e^-5	0.942	INTERGENIC
2R	16702942	2R_16702942_SNP [dm3] 2R_20815437_SNP [dm6]	C	A	3.323e^-5	0.942	INTERGENIC
X	4850462	X_4850462_SNP [dm3] X_4956429_SNP [dm6]	T	C	3.539e^-5	0.942	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3L	2985327	3L_2985327_SNP [dm3] 3L_2985327_SNP [dm6]	G	C	3.563e^-5	0.942	INTERGENIC
3L	9578066	3L_9578066_SNP [dm3] 3L_9584966_SNP [dm6]	T	A	3.612e^-5	0.942	INTRON CG42673
3R	24384144	3R_24384144_SNP [dm3] 3R_28558422_SNP [dm6]	A	G	3.663e^-5	0.942	INTERGENIC
3L	11833682	3L_11833682_SNP [dm3] 3L_11840582_SNP [dm6]	C	T	3.685e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10862770	2R_10862770_SNP [dm3] 2R_14975265_SNP [dm6]	C	T	3.792e^-5	0.942	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16763317	3R_16763317_SNP [dm3] 3R_20937595_SNP [dm6]	G	A	3.940e^-5	0.942	INTRON CG31191
3L	14097292	3L_14097292_SNP [dm3] 3L_14104192_SNP [dm6]	T	C	4.019e^-5	0.942	UTR_3_PRIME Sox21a	TF binding site mE1_TFBS_cad
3R	2816251	3R_2816251_SNP [dm3] 3R_6990529_SNP [dm6]	T	C	4.030e^-5	0.942	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12408865	2R_12408865_SNP [dm3] 2R_16521360_SNP [dm6]	G	A	4.153e^-5	0.942	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14092171	3R_14092171_SNP [dm3] 3R_18266449_SNP [dm6]	C	A	4.216e^-5	0.942	INTERGENIC
3R	6367514	3R_6367514_DEL [dm3] 3R_10541792_DEL [dm6]	TTCCA	T	4.278e^-5	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	23035609	3R_23035609_SNP [dm3] 3R_27209887_SNP [dm6]	G	A	4.336e^-5	0.942	INTERGENIC
3R	21895164	3R_21895164_SNP [dm3] 3R_26069442_SNP [dm6]	T	A	4.399e^-5	0.942	DOWNSTREAM CR44950 INTERGENIC
3R	20424905	3R_20424905_SNP [dm3] 3R_24599183_SNP [dm6]	T	G	4.494e^-5	0.942	INTRON mld
2R	17294335	2R_17294335_SNP [dm3] 2R_21406830_SNP [dm6]	T	C	4.574e^-5	0.942	INTRON Sdc
3L	3801043	3L_3801043_SNP [dm3] 3L_3801043_SNP [dm6]	T	G	4.627e^-5	0.942	UTR_5_PRIME CG32264 INTRON CG32264
3R	20272267	3R_20272267_SNP [dm3] 3R_24446545_SNP [dm6]	G	C	4.634e^-5	0.942	INTRON nAChRalpha1
2L	12460670	2L_12460670_SNP [dm3] 2L_12460670_SNP [dm6]	C	T	4.656e^-5	0.942	SYNONYMOUS_CODING bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17595564	3R_17595564_SNP [dm3] 3R_21769842_SNP [dm6]	C	T	4.672e^-5	0.942	SYNONYMOUS_CODING Burs DOWNSTREAM CG42335 & 1 other
3L	23647677	3L_23647677_SNP [dm3] 3L_23654577_SNP [dm6]	G	T	4.728e^-5	0.942	INTRON AGO3	transposable element FlyBase
3L	23672790	3L_23672790_SNP [dm3] 3L_23679690_SNP [dm6]	G	A	4.728e^-5	0.942	INTRON AGO3
2L	18504976	2L_18504976_INS [dm3] 2L_18504976_INS [dm6]	G	GA	4.750e^-5	0.942	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5123637	3R_5123637_SNP [dm3] 3R_9297915_SNP [dm6]	G	A	4.868e^-5	0.942	INTRON CG8861
3R	14036224	3R_14036224_INS [dm3] 3R_18210502_INS [dm6]	C	CACACACCCACAGACATCAC...	4.975e^-5	0.942	INTRON CG7985
3R	17857779	3R_17857779_SNP [dm3] 3R_22032057_SNP [dm6]	C	G	4.992e^-5	0.942	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13970135	3R_13970135_INS [dm3] 3R_18144413_INS [dm6]	T	TT	4.995e^-5	0.942	INTERGENIC
3R	13758053	3R_13758053_SNP [dm3] 3R_17932331_SNP [dm6]	C	T	5.122e^-5	0.942	UTR_5_PRIME cpo INTRON cpo
2L	1282733	2L_1282733_SNP [dm3] 2L_1282733_SNP [dm6]	A	T	5.367e^-5	0.942	INTRON robo3
2L	19680643	2L_19680643_SNP [dm3] 2L_19680643_SNP [dm6]	G	T	5.508e^-5	0.942	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4201844	2L_4201844_SNP [dm3] 2L_4201844_SNP [dm6]	A	G	5.536e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201848	2L_4201848_SNP [dm3] 2L_4201848_SNP [dm6]	C	A	5.536e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201850	2L_4201850_SNP [dm3] 2L_4201850_SNP [dm6]	A	T	5.536e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201851	2L_4201851_SNP [dm3] 2L_4201851_SNP [dm6]	T	G	5.536e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201853	2L_4201853_SNP [dm3] 2L_4201853_SNP [dm6]	A	T	5.536e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201858	2L_4201858_SNP [dm3] 2L_4201858_SNP [dm6]	G	A	5.536e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201859	2L_4201859_SNP [dm3] 2L_4201859_SNP [dm6]	A	G	5.536e^-5	0.942	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
3R	19458716	3R_19458716_SNP [dm3] 3R_23632994_SNP [dm6]	C	A	5.570e^-5	0.942	INTRON CG31145
3R	23114280	3R_23114280_SNP [dm3] 3R_27288558_SNP [dm6]	T	A	5.789e^-5	0.942	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	2997639	3R_2997639_SNP [dm3] 3R_7171917_SNP [dm6]	T	A	5.857e^-5	0.942	INTRON sas
3R	2997658	3R_2997658_SNP [dm3] 3R_7171936_SNP [dm6]	A	G	5.857e^-5	0.942	INTRON sas
3R	25372307	3R_25372307_SNP [dm3] 3R_29546585_SNP [dm6]	G	T	5.902e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3024123	3L_3024123_SNP [dm3] 3L_3024123_SNP [dm6]	C	A	6.044e^-5	0.942	DOWNSTREAM aly INTERGENIC
3R	23161817	3R_23161817_SNP [dm3] 3R_27336095_SNP [dm6]	T	C	6.058e^-5	0.942	INTERGENIC
3R	25840071	3R_25840071_SNP [dm3] 3R_30014349_SNP [dm6]	A	G	6.184e^-5	0.942	INTRON CG7920
2L	11581430	2L_11581430_SNP [dm3] 2L_11581430_SNP [dm6]	G	T	6.185e^-5	0.942	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10708938	2L_10708938_SNP [dm3] 2L_10708938_SNP [dm6]	G	A	6.231e^-5	0.942	UTR_5_PRIME Lip2
3R	13360397	3R_13360397_SNP [dm3] 3R_17534675_SNP [dm6]	G	A	6.273e^-5	0.942	UPSTREAM P5cr-2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	11077272	3R_11077272_DEL [dm3] 3R_15251550_DEL [dm6]	GGACAAACA	G	6.281e^-5	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11077282	3R_11077282_SNP [dm3] 3R_15251560_SNP [dm6]	T	C	6.281e^-5	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18504998	2L_18504998_SNP [dm3] 2L_18504998_SNP [dm6]	T	G	6.346e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8696260	3L_8696260_MNP [dm3] 3L_8703160_MNP [dm6]	ATTTT	TCGCA	6.436e^-5	0.942	INTERGENIC
3R	14910632	3R_14910632_SNP [dm3] 3R_19084910_SNP [dm6]	G	A	6.503e^-5	0.942	INTRON cdi
3R	25372305	3R_25372305_SNP [dm3] 3R_29546583_SNP [dm6]	A	T	6.535e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	6.560e^-5	0.942	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16785091	X_16785091_SNP [dm3] X_16891058_SNP [dm6]	C	T	6.623e^-5	0.942	DOWNSTREAM CG13002 INTERGENIC
3L	6391821	3L_6391821_SNP [dm3] 3L_6398721_SNP [dm6]	A	G	6.818e^-5	0.942	INTERGENIC
3L	14678830	3L_14678830_SNP [dm3] 3L_14685730_SNP [dm6]	T	C	6.859e^-5	0.942	UTR_3_PRIME CG5048 INTRON ome
2R	14332166	2R_14332166_SNP [dm3] 2R_18444661_SNP [dm6]	G	C	6.867e^-5	0.942	SYNONYMOUS_CODING slim
X	12608543	X_12608543_SNP [dm3] X_12714510_SNP [dm6]	T	C	6.877e^-5	0.942	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
3R	12580990	3R_12580990_SNP [dm3] 3R_16755268_SNP [dm6]	G	C	6.928e^-5	0.942	INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	18505000	2L_18505000_SNP [dm3] 2L_18505000_SNP [dm6]	C	T	7.003e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18950938	2R_18950938_SNP [dm3] 2R_23063415_SNP [dm6]	G	C	7.069e^-5	0.942	SYNONYMOUS_CODING CG9890 UPSTREAM l_2_06496	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4815842	3L_4815842_SNP [dm3] 3L_4815842_SNP [dm6]	C	T	7.159e^-5	0.942	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4816832	3L_4816832_SNP [dm3] 3L_4816832_SNP [dm6]	G	T	7.159e^-5	0.942	INTRON Dhc64C
2L	15336455	2L_15336455_SNP [dm3] 2L_15336455_SNP [dm6]	T	C	7.312e^-5	0.942	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4201855	2L_4201855_SNP [dm3] 2L_4201855_SNP [dm6]	T	G	7.403e^-5	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	18903406	2L_18903406_SNP [dm3] 2L_18903406_SNP [dm6]	C	T	7.434e^-5	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	12570194	2L_12570194_SNP [dm3] 2L_12570194_SNP [dm6]	T	A	7.456e^-5	0.942	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	5464836	3R_5464836_SNP [dm3] 3R_9639114_SNP [dm6]	T	C	7.466e^-5	0.942	INTRON Dh44
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	7.747e^-5	0.942	INTERGENIC
2R	12024607	2R_12024607_SNP [dm3] 2R_16137102_SNP [dm6]	T	C	7.778e^-5	0.942	INTRON spin
3R	24384324	3R_24384324_INS [dm3] 3R_28558602_INS [dm6]	T	TCT	7.780e^-5	0.942	INTERGENIC
3R	14323864	3R_14323864_SNP [dm3] 3R_18498142_SNP [dm6]	G	T	7.814e^-5	0.942	INTRON fru
3R	19572509	3R_19572509_DEL [dm3] 3R_23746787_DEL [dm6]	GAGCCTG	G	7.836e^-5	0.942	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23649566	3L_23649566_SNP [dm3] 3L_23656466_SNP [dm6]	A	G	8.000e^-5	0.942	INTRON AGO3	transposable element FlyBase
2L	19403343	2L_19403343_SNP [dm3] 2L_19403343_SNP [dm6]	A	G	8.018e^-5	0.942	UTR_3_PRIME Pax DOWNSTREAM snmRNA:359 INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3R	7764587	3R_7764587_SNP [dm3] 3R_11938865_SNP [dm6]	T	C	8.019e^-5	0.942	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
3R	5123656	3R_5123656_SNP [dm3] 3R_9297934_SNP [dm6]	A	G	8.027e^-5	0.942	INTRON CG8861
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	8.588e^-5	0.942	INTRON Eip75B
X	14563426	X_14563426_INS [dm3] X_14669393_INS [dm6]	A	ACTAGTA	8.678e^-5	0.942	INTERGENIC
X	14563452	X_14563452_SNP [dm3] X_14669419_SNP [dm6]	C	G	8.678e^-5	0.942	INTERGENIC
X	14563485	X_14563485_SNP [dm3] X_14669452_SNP [dm6]	A	T	8.678e^-5	0.942	INTERGENIC
X	14563495	X_14563495_SNP [dm3] X_14669462_SNP [dm6]	A	T	8.678e^-5	0.942	INTERGENIC
X	14563521	X_14563521_DEL [dm3] X_14669488_DEL [dm6]	TAATATGATAT...	T	8.678e^-5	0.942	INTERGENIC
X	14563553	X_14563553_SNP [dm3] X_14669520_SNP [dm6]	G	A	8.678e^-5	0.942	INTERGENIC
2R	8563239	2R_8563239_SNP [dm3] 2R_12675734_SNP [dm6]	C	T	8.748e^-5	0.942	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2R	17721491	2R_17721491_DEL [dm3] 2R_21833986_DEL [dm6]	CTTAT	C	8.764e^-5	0.942	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	8.773e^-5	0.942	INTRON dally
2R	17294578	2R_17294578_SNP [dm3] 2R_21407073_SNP [dm6]	C	T	8.841e^-5	0.942	INTRON Sdc
2L	11581366	2L_11581366_DEL [dm3] 2L_11581366_DEL [dm6]	ATAGAACGGAA...	A	8.850e^-5	0.942	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12254634	2R_12254634_SNP [dm3] 2R_16367129_SNP [dm6]	T	A	8.909e^-5	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4437670	3L_4437670_SNP [dm3] 3L_4437670_SNP [dm6]	A	C	8.913e^-5	0.942	NON_SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19828735	3R_19828735_SNP [dm3] 3R_24003013_SNP [dm6]	C	A	8.982e^-5	0.942	INTRON KrT95D
X	12508622	X_12508622_SNP [dm3] X_12614589_SNP [dm6]	C	A	9.003e^-5	0.942	NON_SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621	TF binding site mE1_TFBS_sens
2L	9371700	2L_9371700_SNP [dm3] 2L_9371700_SNP [dm6]	G	T	9.062e^-5	0.942	UTR_3_PRIME Shawl UPSTREAM CR43865
3R	25840055	3R_25840055_SNP [dm3] 3R_30014333_SNP [dm6]	G	A	9.138e^-5	0.942	INTRON CG7920
3R	11434734	3R_11434734_SNP [dm3] 3R_15609012_SNP [dm6]	G	T	9.353e^-5	0.942	INTERGENIC
3L	10579537	3L_10579537_SNP [dm3] 3L_10586437_SNP [dm6]	C	T	9.374e^-5	0.942	INTRON A2bp1
3L	11814681	3L_11814681_SNP [dm3] 3L_11821581_SNP [dm6]	T	G	9.488e^-5	0.942	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	21046382	X_21046382_SNP [dm3] X_21175355_SNP [dm6]	A	T	9.495e^-5	0.942	INTERGENIC	transposable element FlyBase
3R	17842848	3R_17842848_SNP [dm3] 3R_22017126_SNP [dm6]	G	A	9.526e^-5	0.942	SYNONYMOUS_CODING CG6439 DOWNSTREAM CG6332	TF binding site mE1_TFBS_sens
3L	11812051	3L_11812051_SNP [dm3] 3L_11818951_SNP [dm6]	C	T	9.556e^-5	0.942	INTRON CG5946
X	5004829	X_5004829_SNP [dm3] X_5110796_SNP [dm6]	T	C	9.573e^-5	0.942	INTRON rg & 1 other
2L	19684253	2L_19684253_SNP [dm3] 2L_19684253_SNP [dm6]	A	C	9.631e^-5	0.942	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11597401	2L_11597401_SNP [dm3] 2L_11597401_SNP [dm6]	G	A	9.756e^-5	0.942	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20501211	2L_20501211_SNP [dm3] 2L_20501211_SNP [dm6]	A	T	9.798e^-5	0.942	INTERGENIC
2L	7238830	2L_7238830_SNP [dm3] 2L_7238830_SNP [dm6]	A	C	9.888e^-5	0.942	INTRON Ndae1
2R	11976373	2R_11976373_SNP [dm3] 2R_16088868_SNP [dm6]	A	G	9.909e^-5	0.942	INTRON Dg
X	12409603	X_12409603_SNP [dm3] X_12515570_SNP [dm6]	A	C	9.911e^-5	0.942	INTRON CG2556
X	16785736	X_16785736_SNP [dm3] X_16891703_SNP [dm6]	G	T	9.939e^-5	0.942	INTERGENIC
3R	16350684	3R_16350684_SNP [dm3] 3R_20524962_SNP [dm6]	A	T	9.955e^-5	0.942	INTERGENIC
2L	9586156	2L_9586156_SNP [dm3] 2L_9586156_SNP [dm6]	T	A	1.008e^-4	0.942	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	12374615	3L_12374615_SNP [dm3] 3L_12381515_SNP [dm6]	A	G	1.022e^-4	0.942	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	1499642	2L_1499642_SNP [dm3] 2L_1499642_SNP [dm6]	G	A	1.024e^-4	0.942	SYNONYMOUS_CODING CG18131 INTRON CG18131
3R	6361206	3R_6361206_DEL [dm3] 3R_10535484_DEL [dm6]	TGGC	G	1.031e^-4	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18505008	2L_18505008_SNP [dm3] 2L_18505008_SNP [dm6]	G	A	1.037e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505022	2L_18505022_DEL [dm3] 2L_18505022_DEL [dm6]	AGAAA	A	1.037e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505028	2L_18505028_SNP [dm3] 2L_18505028_SNP [dm6]	T	C	1.037e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505128	2L_18505128_DEL [dm3] 2L_18505128_DEL [dm6]	AAGTC	A	1.037e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18505136	2L_18505136_DEL [dm3] 2L_18505136_DEL [dm6]	TTA	C	1.037e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25537518	3R_25537518_SNP [dm3] 3R_29711796_SNP [dm6]	C	A	1.055e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3744154	2R_3744154_SNP [dm3] 2R_7856649_SNP [dm6]	T	C	1.080e^-4	0.942	INTRON Dgk
2R	6943770	2R_6943770_SNP [dm3] 2R_11056265_SNP [dm6]	T	G	1.100e^-4	0.942	INTRON luna
X	21045885	X_21045885_SNP [dm3] X_21174858_SNP [dm6]	T	A	1.102e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21045896	X_21045896_SNP [dm3] X_21174869_SNP [dm6]	C	A	1.102e^-4	0.942	INTERGENIC	transposable element FlyBase
X	14563438	X_14563438_SNP [dm3] X_14669405_SNP [dm6]	T	A	1.118e^-4	0.942	INTERGENIC
X	14563439	X_14563439_SNP [dm3] X_14669406_SNP [dm6]	A	G	1.118e^-4	0.942	INTERGENIC
3L	11812446	3L_11812446_SNP [dm3] 3L_11819346_SNP [dm6]	G	A	1.133e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812457	3L_11812457_INS [dm3] 3L_11819357_INS [dm6]	TG	GAAT	1.133e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812474	3L_11812474_SNP [dm3] 3L_11819374_SNP [dm6]	A	G	1.133e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13361101	3R_13361101_SNP [dm3] 3R_17535379_SNP [dm6]	A	G	1.135e^-4	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	1.146e^-4	0.942	INTRON AGO3	transposable element FlyBase
3R	18640728	3R_18640728_SNP [dm3] 3R_22815006_SNP [dm6]	C	T	1.150e^-4	0.942	SYNONYMOUS_CODING CG13840	TF binding site mE1_TFBS_chinmo
2R	12229462	2R_12229462_SNP [dm3] 2R_16341957_SNP [dm6]	G	A	1.152e^-4	0.942	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10782897	3R_10782897_SNP [dm3] 3R_14957175_SNP [dm6]	G	T	1.155e^-4	0.942	INTERGENIC
3R	21908427	3R_21908427_SNP [dm3] 3R_26082705_SNP [dm6]	A	G	1.157e^-4	0.942	INTRON dys	TF binding site mE1_TFBS_cad
3L	4816863	3L_4816863_SNP [dm3] 3L_4816863_SNP [dm6]	T	C	1.158e^-4	0.942	INTRON Dhc64C
3L	4816977	3L_4816977_SNP [dm3] 3L_4816977_SNP [dm6]	A	C	1.158e^-4	0.942	INTRON Dhc64C
3R	5200079	3R_5200079_SNP [dm3] 3R_9374357_SNP [dm6]	T	C	1.165e^-4	0.942	INTRON FER
3R	17670937	3R_17670937_SNP [dm3] 3R_21845215_SNP [dm6]	G	T	1.169e^-4	0.942	SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
X	14563466	X_14563466_SNP [dm3] X_14669433_SNP [dm6]	C	A	1.173e^-4	0.942	INTERGENIC
2L	12570172	2L_12570172_SNP [dm3] 2L_12570172_SNP [dm6]	C	T	1.173e^-4	0.942	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	19828890	3R_19828890_SNP [dm3] 3R_24003168_SNP [dm6]	G	T	1.177e^-4	0.942	INTRON KrT95D
3L	6983314	3L_6983314_SNP [dm3] 3L_6990214_SNP [dm6]	T	A	1.178e^-4	0.942	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	19828886	3R_19828886_SNP [dm3] 3R_24003164_SNP [dm6]	A	T	1.186e^-4	0.942	INTRON KrT95D
X	3463362	X_3463362_SNP [dm3] X_3569329_SNP [dm6]	A	T	1.188e^-4	0.942	UPSTREAM ppk8 INTRON ppk8 & 1 other
3R	20378406	3R_20378406_SNP [dm3] 3R_24552684_SNP [dm6]	G	A	1.200e^-4	0.942	INTRON Esyt2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25389307	3R_25389307_SNP [dm3] 3R_29563585_SNP [dm6]	C	T	1.203e^-4	0.942	INTRON Dr	TF binding site mE1_TFBS_chinmo
3L	723422	3L_723422_DEL [dm3] 3L_723422_DEL [dm6]	AGT	TC	1.205e^-4	0.942	INTERGENIC
3L	3029518	3L_3029518_SNP [dm3] 3L_3029518_SNP [dm6]	G	T	1.229e^-4	0.942	INTERGENIC
3R	7876272	3R_7876272_SNP [dm3] 3R_12050550_SNP [dm6]	A	G	1.241e^-4	0.942	INTERGENIC
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	1.288e^-4	0.942	INTRON CG40470
2L	15615672	2L_15615672_SNP [dm3] 2L_15615672_SNP [dm6]	G	A	1.290e^-4	0.942	SYNONYMOUS_CODING CG15253 UPSTREAM CG15254
3L	5422470	3L_5422470_SNP [dm3] 3L_5429370_SNP [dm6]	G	A	1.297e^-4	0.942	UTR_5_PRIME CG34391
3L	1423730	3L_1423730_DEL [dm3] 3L_1423730_DEL [dm6]	TG	T	1.324e^-4	0.942	UPSTREAM CG9173 INTRON Ptp61F
3L	15365861	3L_15365861_SNP [dm3] 3L_15372761_SNP [dm6]	G	A	1.331e^-4	0.942	INTERGENIC
3L	16686471	3L_16686471_SNP [dm3] 3L_16693371_SNP [dm6]	C	T	1.332e^-4	0.942	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2L	19269142	2L_19269142_SNP [dm3] 2L_19269142_SNP [dm6]	A	G	1.343e^-4	0.942	EXON CR44190
3R	22397512	3R_22397512_DEL [dm3] 3R_26571790_DEL [dm6]	GATGGCGTTACTTCGTTCG...	G	1.347e^-4	0.942	INTRON scrib
3R	15794938	3R_15794938_INS [dm3] 3R_19969216_INS [dm6]	A	AC	1.348e^-4	0.942	INTRON Hs6st
2L	966070	2L_966070_DEL [dm3] 2L_966070_DEL [dm6]	AGTTATTTA	A	1.354e^-4	0.942	INTERGENIC
X	18197354	X_18197354_SNP [dm3] X_18303321_SNP [dm6]	T	C	1.357e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	7046065	2R_7046065_SNP [dm3] 2R_11158560_SNP [dm6]	T	G	1.362e^-4	0.942	UPSTREAM shn INTRON CG13229
3R	7764084	3R_7764084_SNP [dm3] 3R_11938362_SNP [dm6]	C	A	1.363e^-4	0.942	INTRON Cad87A
2R	2689044	2R_2689044_SNP [dm3] 2R_6801539_SNP [dm6]	C	T	1.364e^-4	0.942	INTERGENIC
3L	23649585	3L_23649585_SNP [dm3] 3L_23656485_SNP [dm6]	C	T	1.369e^-4	0.942	INTRON AGO3	transposable element FlyBase
2R	4247063	2R_4247063_SNP [dm3] 2R_8359558_SNP [dm6]	G	C	1.380e^-4	0.942	SYNONYMOUS_CODING spaw UTR_3_PRIME hubl DOWNSTREAM CG11635 INTRON pdm3
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	1.382e^-4	0.942	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25509567	3R_25509567_SNP [dm3] 3R_29683845_SNP [dm6]	T	G	1.404e^-4	0.942	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
3L	6390382	3L_6390382_SNP [dm3] 3L_6397282_SNP [dm6]	T	A	1.423e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15794936	3R_15794936_SNP [dm3] 3R_19969214_SNP [dm6]	C	G	1.426e^-4	0.942	INTRON Hs6st
3L	18131081	3L_18131081_SNP [dm3] 3L_18137981_SNP [dm6]	C	T	1.428e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6325388	2L_6325388_SNP [dm3] 2L_6325388_SNP [dm6]	T	C	1.437e^-4	0.942	NON_SYNONYMOUS_CODING PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10040195	3R_10040195_SNP [dm3] 3R_14214473_SNP [dm6]	A	G	1.454e^-4	0.942	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
X	20968068	X_20968068_SNP [dm3] X_21097041_SNP [dm6]	C	T	1.474e^-4	0.942	INTRON stg1 & 2 others
3L	2983899	3L_2983899_SNP [dm3] 3L_2983899_SNP [dm6]	A	G	1.490e^-4	0.942	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15569024	2R_15569024_SNP [dm3] 2R_19681519_SNP [dm6]	A	C	1.493e^-4	0.942	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3L	3883218	3L_3883218_SNP [dm3] 3L_3883218_SNP [dm6]	C	T	1.509e^-4	0.942	INTERGENIC
3R	17694243	3R_17694243_SNP [dm3] 3R_21868521_SNP [dm6]	C	T	1.510e^-4	0.942	SYNONYMOUS_CODING Cby UPSTREAM CG6569 DOWNSTREAM CG31174
3L	554818	3L_554818_SNP [dm3] 3L_554818_SNP [dm6]	C	G	1.529e^-4	0.942	INTRON hipk
2R	12294542	2R_12294542_SNP [dm3] 2R_16407037_SNP [dm6]	C	T	1.533e^-4	0.942	INTRON Sema-2b
3L	11812503	3L_11812503_SNP [dm3] 3L_11819403_SNP [dm6]	G	A	1.534e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24994195	3R_24994195_INS [dm3] 3R_29168473_INS [dm6]	C	CAATC	1.555e^-4	0.942	INTRON CG11898
3R	17693745	3R_17693745_SNP [dm3] 3R_21868023_SNP [dm6]	G	C	1.557e^-4	0.942	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
2L	15615918	2L_15615918_SNP [dm3] 2L_15615918_SNP [dm6]	A	G	1.563e^-4	0.942	SYNONYMOUS_CODING CG15253
2R	17430615	2R_17430615_SNP [dm3] 2R_21543110_SNP [dm6]	C	G	1.570e^-4	0.942	INTRON Egfr
3R	6367541	3R_6367541_SNP [dm3] 3R_10541819_SNP [dm6]	T	C	1.573e^-4	0.942	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	11415322	2L_11415322_SNP [dm3] 2L_11415322_SNP [dm6]	G	C	1.574e^-4	0.942	INTERGENIC
3R	2997564	3R_2997564_SNP [dm3] 3R_7171842_SNP [dm6]	T	A	1.581e^-4	0.942	INTRON sas
3L	22653158	3L_22653158_SNP [dm3] 3L_22660058_SNP [dm6]	C	T	1.582e^-4	0.942	INTERGENIC
3R	13360975	3R_13360975_SNP [dm3] 3R_17535253_SNP [dm6]	C	A	1.583e^-4	0.942	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	6983256	3L_6983256_SNP [dm3] 3L_6990156_SNP [dm6]	G	A	1.584e^-4	0.942	UPSTREAM bin INTERGENIC
2R	8900997	2R_8900997_SNP [dm3] 2R_13013492_SNP [dm6]	A	T	1.603e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2285957	3L_2285957_DEL [dm3] 3L_2285957_DEL [dm6]	AGGCGCCATATCA...	A	1.605e^-4	0.942	INTRON MsR2
2L	19371146	2L_19371146_SNP [dm3] 2L_19371146_SNP [dm6]	C	T	1.619e^-4	0.942	SYNONYMOUS_CODING CG17349
3L	2106064	3L_2106064_SNP [dm3] 3L_2106064_SNP [dm6]	G	A	1.621e^-4	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11812453	3L_11812453_SNP [dm3] 3L_11819353_SNP [dm6]	G	T	1.636e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15856461	3L_15856461_SNP [dm3] 3L_15863361_SNP [dm6]	G	A	1.639e^-4	0.942	DOWNSTREAM pHCl INTRON pHCl
3R	23932600	3R_23932600_SNP [dm3] 3R_28106878_SNP [dm6]	A	C	1.666e^-4	0.942	INTERGENIC
3L	3727474	3L_3727474_SNP [dm3] 3L_3727474_SNP [dm6]	T	A	1.667e^-4	0.942	INTRON CG32264
3R	25840291	3R_25840291_INS [dm3] 3R_30014569_INS [dm6]	A	ATGTA	1.669e^-4	0.942	DOWNSTREAM Mgat2 INTRON CG7920	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9929671	3R_9929671_SNP [dm3] 3R_14103949_SNP [dm6]	C	T	1.689e^-4	0.942	UPSTREAM PK1-R DOWNSTREAM CG12402 INTERGENIC
3R	25588511	3R_25588511_SNP [dm3] 3R_29762789_SNP [dm6]	G	T	1.700e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12055228	3L_12055228_SNP [dm3] 3L_12062128_SNP [dm6]	T	C	1.714e^-4	0.942	INTRON rols
3R	25840062	3R_25840062_SNP [dm3] 3R_30014340_SNP [dm6]	G	C	1.715e^-4	0.942	INTRON CG7920
3R	3468966	3R_3468966_SNP [dm3] 3R_7643244_SNP [dm6]	G	A	1.716e^-4	0.942	INTERGENIC	transposable element FlyBase
2R	15078644	2R_15078644_SNP [dm3] 2R_19191139_SNP [dm6]	T	C	1.718e^-4	0.942	INTRON hppy
2L	10444659	2L_10444659_DEL [dm3] 2L_10444659_DEL [dm6]	CTGTGGTC	C	1.722e^-4	0.942	INTRON loh
3L	8657986	3L_8657986_SNP [dm3] 3L_8664886_SNP [dm6]	C	A	1.723e^-4	0.942	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2904588	3L_2904588_SNP [dm3] 3L_2904588_SNP [dm6]	C	G	1.728e^-4	0.942	INTRON Shab
3R	16763316	3R_16763316_SNP [dm3] 3R_20937594_SNP [dm6]	G	C	1.729e^-4	0.942	INTRON CG31191
3L	10025660	3L_10025660_SNP [dm3] 3L_10032560_SNP [dm6]	T	A	1.743e^-4	0.942	INTRON dpr6
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	1.751e^-4	0.942	UTR_3_PRIME AdSL INTRON Pxd
3L	18145995	3L_18145995_SNP [dm3] 3L_18152895_SNP [dm6]	G	T	1.752e^-4	0.942	INTRON CG7330
2L	579640	2L_579640_SNP [dm3] 2L_579640_SNP [dm6]	C	T	1.752e^-4	0.942	DOWNSTREAM Pph13 INTERGENIC
3L	14336479	3L_14336479_SNP [dm3] 3L_14343379_SNP [dm6]	T	C	1.764e^-4	0.942	INTRON fz
X	2774822	X_2774822_SNP [dm3] X_2880789_SNP [dm6]	G	A	1.784e^-4	0.942	INTRON kirre
3R	15794920	3R_15794920_SNP [dm3] 3R_19969198_SNP [dm6]	A	C	1.811e^-4	0.942	INTRON Hs6st
X	12508620	X_12508620_SNP [dm3] X_12614587_SNP [dm6]	G	A	1.815e^-4	0.942	SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621	TF binding site mE1_TFBS_sens
3L	12315454	3L_12315454_SNP [dm3] 3L_12322354_SNP [dm6]	A	C	1.822e^-4	0.942	INTERGENIC
3R	15568180	3R_15568180_SNP [dm3] 3R_19742458_SNP [dm6]	G	C	1.845e^-4	0.942	INTRON GluClalpha
3R	15568182	3R_15568182_SNP [dm3] 3R_19742460_SNP [dm6]	G	A	1.845e^-4	0.942	INTRON GluClalpha
3L	11814597	3L_11814597_SNP [dm3] 3L_11821497_SNP [dm6]	T	C	1.864e^-4	0.942	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	2752530	3R_2752530_SNP [dm3] 3R_6926808_SNP [dm6]	C	A	1.864e^-4	0.942	INTRON Antp
3R	14903067	3R_14903067_SNP [dm3] 3R_19077345_SNP [dm6]	A	G	1.891e^-4	0.942	INTRON cdi
3L	8661273	3L_8661273_SNP [dm3] 3L_8668173_SNP [dm6]	C	T	1.901e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11812477	3L_11812477_SNP [dm3] 3L_11819377_SNP [dm6]	T	A	1.933e^-4	0.942	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13935674	2L_13935674_SNP [dm3] 2L_13935674_SNP [dm6]	A	G	1.934e^-4	0.942	UPSTREAM CG16885 INTRON Ance-3
2R	12294501	2R_12294501_SNP [dm3] 2R_16406996_SNP [dm6]	C	T	1.953e^-4	0.942	INTRON Sema-2b
3R	18668879	3R_18668879_DEL [dm3] 3R_22843157_DEL [dm6]	AA	A	1.955e^-4	0.942	DOWNSTREAM CG4704 INTERGENIC
3R	18668907	3R_18668907_INS [dm3] 3R_22843185_INS [dm6]	T	TAT	1.955e^-4	0.942	DOWNSTREAM CG4704 INTERGENIC
2R	16966945	2R_16966945_SNP [dm3] 2R_21079440_SNP [dm6]	C	T	1.961e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16967002	2R_16967002_SNP [dm3] 2R_21079497_SNP [dm6]	T	G	1.961e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14672986	3R_14672986_SNP [dm3] 3R_18847264_SNP [dm6]	G	T	1.983e^-4	0.942	INTRON CG18208
3L	9634626	3L_9634626_SNP [dm3] 3L_9641526_SNP [dm6]	T	C	1.988e^-4	0.942	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	513402	3L_513402_SNP [dm3] 3L_513402_SNP [dm6]	G	T	1.991e^-4	0.942	INTRON klar
X	21048267	X_21048267_SNP [dm3] X_21177240_SNP [dm6]	T	C	2.011e^-4	0.942	INTERGENIC
3R	21896971	3R_21896971_SNP [dm3] 3R_26071249_SNP [dm6]	G	T	2.027e^-4	0.942	EXON CR44950
3R	25389277	3R_25389277_DEL [dm3] 3R_29563555_DEL [dm6]	TT	T	2.044e^-4	0.942	INTRON Dr	TF binding site mE1_TFBS_chinmo
3L	7221678	3L_7221678_SNP [dm3] 3L_7228578_SNP [dm6]	A	C	2.054e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7221715	3L_7221715_SNP [dm3] 3L_7228615_SNP [dm6]	A	C	2.054e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	12254088	2R_12254088_SNP [dm3] 2R_16366583_SNP [dm6]	T	A	2.058e^-4	0.942	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13378057	X_13378057_SNP [dm3] X_13484024_SNP [dm6]	T	C	2.069e^-4	0.942	INTRON Neto
2R	11976356	2R_11976356_SNP [dm3] 2R_16088851_SNP [dm6]	C	A	2.070e^-4	0.942	INTRON Dg
3R	9961503	3R_9961503_SNP [dm3] 3R_14135781_SNP [dm6]	T	A	2.083e^-4	0.942	INTERGENIC
3R	5464955	3R_5464955_SNP [dm3] 3R_9639233_SNP [dm6]	A	G	2.094e^-4	0.942	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3R	9661664	3R_9661664_SNP [dm3] 3R_13835942_SNP [dm6]	C	T	2.099e^-4	0.942	SYNONYMOUS_CODING Nsf2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3791514	2L_3791514_SNP [dm3] 2L_3791514_SNP [dm6]	A	T	2.102e^-4	0.942	INTRON CG3921
3L	2639587	3L_2639587_SNP [dm3] 3L_2639587_SNP [dm6]	A	T	2.106e^-4	0.942	INTRON MEP-1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11686070	2R_11686070_DEL [dm3] 2R_15798565_DEL [dm6]	GA	G	2.118e^-4	0.942	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6390425	3L_6390425_SNP [dm3] 3L_6397325_SNP [dm6]	C	A	2.144e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	3014864	3R_3014864_SNP [dm3] 3R_7189142_SNP [dm6]	G	T	2.144e^-4	0.942	INTRON lap
2R	12348028	2R_12348028_SNP [dm3] 2R_16460523_SNP [dm6]	A	T	2.146e^-4	0.942	INTERGENIC
2L	19345004	2L_19345004_SNP [dm3] 2L_19345004_SNP [dm6]	C	A	2.158e^-4	0.942	INTRON dnt
2L	19345005	2L_19345005_SNP [dm3] 2L_19345005_SNP [dm6]	C	A	2.158e^-4	0.942	INTRON dnt
3R	15348147	3R_15348147_SNP [dm3] 3R_19522425_SNP [dm6]	A	C	2.164e^-4	0.942	INTRON Dys
2L	5066778	2L_5066778_SNP [dm3] 2L_5066778_SNP [dm6]	A	C	2.179e^-4	0.942	INTRON qtc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17641099	2L_17641099_SNP [dm3] 2L_17641099_SNP [dm6]	C	G	2.182e^-4	0.942	INTERGENIC
2L	12589564	2L_12589564_SNP [dm3] 2L_12589564_SNP [dm6]	C	T	2.187e^-4	0.942	INTRON nub	TF binding site mE1_TFBS_cad
X	3319584	X_3319584_DEL [dm3] X_3425551_DEL [dm6]	GATGTGG	G	2.189e^-4	0.942	INTRON CR44999 & 1 other
3L	558897	3L_558897_SNP [dm3] 3L_558897_SNP [dm6]	T	A	2.191e^-4	0.942	INTRON hipk
2R	19496632	2R_19496632_SNP [dm3] 2R_23609109_SNP [dm6]	C	A	2.192e^-4	0.942	UPSTREAM CG4019 INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11812414	3L_11812414_SNP [dm3] 3L_11819314_SNP [dm6]	G	A	2.213e^-4	0.942	INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2042615	3L_2042615_SNP [dm3] 3L_2042615_SNP [dm6]	A	G	2.215e^-4	0.942	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	2043216	3L_2043216_SNP [dm3] 3L_2043216_SNP [dm6]	T	C	2.215e^-4	0.942	INTRON sls	TF binding site mE1_TFBS_cad
3L	23608180	3L_23608180_SNP [dm3] 3L_23615080_SNP [dm6]	C	A	2.218e^-4	0.942	INTRON AGO3
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	2.223e^-4	0.942	SYNONYMOUS_CODING aly
3R	11072466	3R_11072466_SNP [dm3] 3R_15246744_SNP [dm6]	T	A	2.226e^-4	0.942	DOWNSTREAM CG6499 & 1 other INTERGENIC
3R	23114281	3R_23114281_SNP [dm3] 3R_27288559_SNP [dm6]	G	T	2.230e^-4	0.942	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	19828903	3R_19828903_SNP [dm3] 3R_24003181_SNP [dm6]	A	T	2.232e^-4	0.942	INTRON KrT95D
3R	7537959	3R_7537959_SNP [dm3] 3R_11712237_SNP [dm6]	G	A	2.233e^-4	0.942	SYNONYMOUS_CODING CG14720	TF binding site mE1_TFBS_cad
3R	11409169	3R_11409169_SNP [dm3] 3R_15583447_SNP [dm6]	C	T	2.242e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11105933	3R_11105933_DEL [dm3] 3R_15280211_DEL [dm6]	TTTGTTGGCGATAAG...	T	2.246e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15794937	3R_15794937_SNP [dm3] 3R_19969215_SNP [dm6]	T	G	2.249e^-4	0.942	INTRON Hs6st
3R	18668914	3R_18668914_SNP [dm3] 3R_22843192_SNP [dm6]	A	G	2.249e^-4	0.942	DOWNSTREAM CG4704 INTERGENIC
3R	10249655	3R_10249655_SNP [dm3] 3R_14423933_SNP [dm6]	T	G	2.253e^-4	0.942	INTRON cv-c
3R	15795113	3R_15795113_SNP [dm3] 3R_19969391_SNP [dm6]	T	A	2.253e^-4	0.942	INTRON Hs6st
3R	11072463	3R_11072463_SNP [dm3] 3R_15246741_SNP [dm6]	A	G	2.272e^-4	0.942	DOWNSTREAM CG6499 & 1 other INTERGENIC
3R	11072464	3R_11072464_INS [dm3] 3R_15246742_INS [dm6]	T	TA	2.272e^-4	0.942	DOWNSTREAM CG6499 & 1 other INTERGENIC
2L	19337283	2L_19337283_SNP [dm3] 2L_19337283_SNP [dm6]	G	A	2.276e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16261088	3R_16261088_SNP [dm3] 3R_20435366_SNP [dm6]	G	A	2.277e^-4	0.942	INTRON Gfrl	TF binding site mE1_TFBS_inv
2L	15496147	2L_15496147_SNP [dm3] 2L_15496147_SNP [dm6]	T	G	2.277e^-4	0.942	INTERGENIC
3L	2904581	3L_2904581_SNP [dm3] 3L_2904581_SNP [dm6]	A	T	2.278e^-4	0.942	INTRON Shab
3R	11402937	3R_11402937_SNP [dm3] 3R_15577215_SNP [dm6]	T	C	2.288e^-4	0.942	INTERGENIC
2R	7046087	2R_7046087_SNP [dm3] 2R_11158582_SNP [dm6]	C	G	2.290e^-4	0.942	UPSTREAM shn INTRON CG13229
3L	2666434	3L_2666434_SNP [dm3] 3L_2666434_SNP [dm6]	T	G	2.297e^-4	0.942	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
3R	11471581	3R_11471581_SNP [dm3] 3R_15645859_SNP [dm6]	A	G	2.314e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11699781	3L_11699781_SNP [dm3] 3L_11706681_SNP [dm6]	C	T	2.316e^-4	0.942	INTRON CG11658
3R	21891679	3R_21891679_SNP [dm3] 3R_26065957_SNP [dm6]	T	A	2.328e^-4	0.942	INTERGENIC
3R	21891703	3R_21891703_SNP [dm3] 3R_26065981_SNP [dm6]	T	G	2.328e^-4	0.942	INTERGENIC
2R	8347132	2R_8347132_SNP [dm3] 2R_12459627_SNP [dm6]	A	C	2.334e^-4	0.942	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11745546	2L_11745546_SNP [dm3] 2L_11745546_SNP [dm6]	A	T	2.341e^-4	0.942	INTERGENIC
2L	11745549	2L_11745549_INS [dm3] 2L_11745549_INS [dm6]	T	TA	2.341e^-4	0.942	INTERGENIC
2L	13633678	2L_13633678_SNP [dm3] 2L_13633678_SNP [dm6]	G	T	2.359e^-4	0.942	UPSTREAM CR43410 INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5756713	2R_5756713_SNP [dm3] 2R_9869208_SNP [dm6]	A	G	2.374e^-4	0.942	DOWNSTREAM CR45138 INTRON cbx	transposable element FlyBase
3R	11424928	3R_11424928_SNP [dm3] 3R_15599206_SNP [dm6]	A	C	2.375e^-4	0.942	INTERGENIC
3R	3908653	3R_3908653_SNP [dm3] 3R_8082931_SNP [dm6]	C	T	2.388e^-4	0.942	SYNONYMOUS_CODING mAChR-B
3R	3856837	3R_3856837_SNP [dm3] 3R_8031115_SNP [dm6]	G	T	2.389e^-4	0.942	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	22363808	3R_22363808_SNP [dm3] 3R_26538086_SNP [dm6]	T	G	2.391e^-4	0.942	INTRON scrib
X	3660671	X_3660671_SNP [dm3] X_3766638_SNP [dm6]	T	A	2.403e^-4	0.942	INTRON tlk
3R	17576290	3R_17576290_SNP [dm3] 3R_21750568_SNP [dm6]	C	T	2.411e^-4	0.942	SYNONYMOUS_CODING CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17584434	X_17584434_DEL [dm3] X_17690401_DEL [dm6]	AA	A	2.459e^-4	0.942	INTRON chas
X	6198723	X_6198723_SNP [dm3] X_6304690_SNP [dm6]	A	T	2.473e^-4	0.942	INTRON CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17652421	3R_17652421_DEL [dm3] 3R_21826699_DEL [dm6]	ACACACCAGCA...	A	2.485e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15347930	3R_15347930_SNP [dm3] 3R_19522208_SNP [dm6]	G	A	2.490e^-4	0.942	INTRON Dys
3L	15509506	3L_15509506_SNP [dm3] 3L_15516406_SNP [dm6]	T	G	2.492e^-4	0.942	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	2.500e^-4	0.942	INTRON CG13579
2R	4492677	2R_4492677_SNP [dm3] 2R_8605172_SNP [dm6]	G	T	2.501e^-4	0.942	INTRON rgr
X	21048222	X_21048222_SNP [dm3] X_21177195_SNP [dm6]	T	C	2.510e^-4	0.942	INTERGENIC
3R	17693774	3R_17693774_SNP [dm3] 3R_21868052_SNP [dm6]	T	G	2.512e^-4	0.942	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
3R	13965824	3R_13965824_SNP [dm3] 3R_18140102_SNP [dm6]	G	A	2.513e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9024772	3R_9024772_SNP [dm3] 3R_13199050_SNP [dm6]	A	G	2.514e^-4	0.942	INTERGENIC
3L	9420460	3L_9420460_SNP [dm3] 3L_9427360_SNP [dm6]	G	A	2.525e^-4	0.942	UPSTREAM CG3967 INTRON Shc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16966955	2R_16966955_SNP [dm3] 2R_21079450_SNP [dm6]	A	G	2.530e^-4	0.942	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3938070	3L_3938070_SNP [dm3] 3L_3938070_SNP [dm6]	A	G	2.538e^-4	0.942	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17453263	2L_17453263_SNP [dm3] 2L_17453263_SNP [dm6]	A	T	2.545e^-4	0.942	SYNONYMOUS_CODING CG5050 DOWNSTREAM CG6639
3R	3883261	3R_3883261_SNP [dm3] 3R_8057539_SNP [dm6]	C	T	2.549e^-4	0.942	INTERGENIC
2R	12254509	2R_12254509_SNP [dm3] 2R_16367004_SNP [dm6]	G	T	2.562e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18007236	3L_18007236_SNP [dm3] 3L_18014136_SNP [dm6]	T	C	2.575e^-4	0.942	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15856460	3L_15856460_SNP [dm3] 3L_15863360_SNP [dm6]	A	T	2.590e^-4	0.942	DOWNSTREAM pHCl INTRON pHCl
3R	25545852	3R_25545852_SNP [dm3] 3R_29720130_SNP [dm6]	T	A	2.597e^-4	0.942	INTRON CG15506
3R	21511115	3R_21511115_SNP [dm3] 3R_25685393_SNP [dm6]	T	A	2.600e^-4	0.942	STOP_GAINED CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	18504997	2L_18504997_SNP [dm3] 2L_18504997_SNP [dm6]	G	C	2.631e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15877802	3L_15877802_SNP [dm3] 3L_15884702_SNP [dm6]	T	A	2.643e^-4	0.942	INTRON pHCl EXON CR44050
2R	20240417	2R_20240417_SNP [dm3] 2R_24352894_SNP [dm6]	C	T	2.653e^-4	0.942	INTRON bs & 1 other	TF binding site mE1_TFBS_chinmo
2L	4201812	2L_4201812_SNP [dm3] 2L_4201812_SNP [dm6]	T	A	2.662e^-4	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201841	2L_4201841_SNP [dm3] 2L_4201841_SNP [dm6]	G	C	2.662e^-4	0.942	INTRON ft	TF binding site mE1_TFBS_chinmo
X	11676528	X_11676528_SNP [dm3] X_11782495_SNP [dm6]	T	G	2.684e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15616826	2L_15616826_INS [dm3] 2L_15616826_INS [dm6]	A	AG	2.694e^-4	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
2R	8156978	2R_8156978_SNP [dm3] 2R_12269473_SNP [dm6]	A	G	2.698e^-4	0.942	INTRON Cam
3R	19771929	3R_19771929_SNP [dm3] 3R_23946207_SNP [dm6]	A	T	2.698e^-4	0.942	INTRON CG12268
X	21045993	X_21045993_DEL [dm3] X_21174966_DEL [dm6]	TGT	T	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046277	X_21046277_SNP [dm3] X_21175250_SNP [dm6]	G	A	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046345	X_21046345_SNP [dm3] X_21175318_SNP [dm6]	C	T	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046362	X_21046362_SNP [dm3] X_21175335_SNP [dm6]	C	T	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21046424	X_21046424_DEL [dm3] X_21175397_DEL [dm6]	GT	G	2.699e^-4	0.942	INTERGENIC
X	21046446	X_21046446_SNP [dm3] X_21175419_SNP [dm6]	A	T	2.699e^-4	0.942	INTERGENIC
X	21046951	X_21046951_DEL [dm3] X_21175924_DEL [dm6]	TAACGCTCACAAACCGCACT...	T	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21047005	X_21047005_DEL [dm3] X_21175978_DEL [dm6]	GATATTTTTTGACATTTATA...	G	2.699e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21047206	X_21047206_SNP [dm3] X_21176179_SNP [dm6]	T	G	2.699e^-4	0.942	INTERGENIC
X	21047306	X_21047306_SNP [dm3] X_21176279_SNP [dm6]	A	T	2.699e^-4	0.942	INTERGENIC
X	21047308	X_21047308_DEL [dm3] X_21176281_DEL [dm6]	GCCATTCAGTT...	G	2.699e^-4	0.942	INTERGENIC
X	21047328	X_21047328_DEL [dm3] X_21176301_DEL [dm6]	CTCTTTGCGTTCACTTCGTA...	C	2.699e^-4	0.942	INTERGENIC
X	21047357	X_21047357_DEL [dm3] X_21176330_DEL [dm6]	ACTTTT	C	2.699e^-4	0.942	INTERGENIC
X	21047366	X_21047366_DEL [dm3] X_21176339_DEL [dm6]	CG	A	2.699e^-4	0.942	INTERGENIC
X	21047372	X_21047372_DEL [dm3] X_21176345_DEL [dm6]	ATCGAAATGA	A	2.699e^-4	0.942	INTERGENIC
X	21047402	X_21047402_DEL [dm3] X_21176375_DEL [dm6]	GAATGAATGAAG...	G	2.699e^-4	0.942	INTERGENIC
3L	7642809	3L_7642809_SNP [dm3] 3L_7649709_SNP [dm6]	C	A	2.705e^-4	0.942	UPSTREAM CG32373 INTERGENIC
2R	16481072	2R_16481072_SNP [dm3] 2R_20593567_SNP [dm6]	T	C	2.710e^-4	0.942	UPSTREAM bl INTRON bl
3R	18729530	3R_18729530_SNP [dm3] 3R_22903808_SNP [dm6]	T	C	2.711e^-4	0.942	INTRON klg	TF binding site mE1_TFBS_chinmo
3L	2043137	3L_2043137_SNP [dm3] 3L_2043137_SNP [dm6]	A	G	2.719e^-4	0.942	INTRON sls	TF binding site mE1_TFBS_cad
X	12642800	X_12642800_SNP [dm3] X_12748767_SNP [dm6]	C	T	2.719e^-4	0.942	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2R	19980677	2R_19980677_SNP [dm3] 2R_24093154_SNP [dm6]	G	T	2.723e^-4	0.942	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16422401	X_16422401_SNP [dm3] X_16528368_SNP [dm6]	G	A	2.727e^-4	0.942	UPSTREAM para INTRON para
3R	18654912	3R_18654912_SNP [dm3] 3R_22829190_SNP [dm6]	G	A	2.734e^-4	0.942	INTERGENIC
2R	18372101	2R_18372101_SNP [dm3] 2R_22484596_SNP [dm6]	A	T	2.736e^-4	0.942	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13673305	3R_13673305_SNP [dm3] 3R_17847583_SNP [dm6]	C	T	2.739e^-4	0.942	INTRON tinc
3L	11812120	3L_11812120_SNP [dm3] 3L_11819020_SNP [dm6]	A	C	2.740e^-4	0.942	INTRON CG5946
3L	3873958	3L_3873958_SNP [dm3] 3L_3873958_SNP [dm6]	T	A	2.757e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16702951	2R_16702951_SNP [dm3] 2R_20815446_SNP [dm6]	C	T	2.761e^-4	0.942	INTERGENIC
3R	17694231	3R_17694231_SNP [dm3] 3R_21868509_SNP [dm6]	A	G	2.767e^-4	0.942	SYNONYMOUS_CODING Cby UPSTREAM CG6569 DOWNSTREAM CG31174
2L	4210707	2L_4210707_SNP [dm3] 2L_4210707_SNP [dm6]	G	A	2.780e^-4	0.942	INTRON ft
3R	22172142	3R_22172142_SNP [dm3] 3R_26346420_SNP [dm6]	G	T	2.780e^-4	0.942	UPSTREAM CG6036 INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15347570	3R_15347570_SNP [dm3] 3R_19521848_SNP [dm6]	T	G	2.785e^-4	0.942	INTRON Dys
2L	19363090	2L_19363090_SNP [dm3] 2L_19363090_SNP [dm6]	C	T	2.796e^-4	0.942	UTR_5_PRIME dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18189814	X_18189814_SNP [dm3] X_18295781_SNP [dm6]	A	T	2.798e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4576300	3L_4576300_SNP [dm3] 3L_4576300_SNP [dm6]	G	A	2.810e^-4	0.942	INTRON CG42540
3R	22363654	3R_22363654_SNP [dm3] 3R_26537932_SNP [dm6]	T	A	2.811e^-4	0.942	INTRON scrib
3L	2377603	3L_2377603_SNP [dm3] 3L_2377603_SNP [dm6]	C	A	2.811e^-4	0.942	UPSTREAM CG45186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11425306	3R_11425306_SNP [dm3] 3R_15599584_SNP [dm6]	G	C	2.817e^-4	0.942	INTERGENIC
3R	7871965	3R_7871965_SNP [dm3] 3R_12046243_SNP [dm6]	C	T	2.817e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18061622	3L_18061622_SNP [dm3] 3L_18068522_SNP [dm6]	T	C	2.842e^-4	0.942	DOWNSTREAM CG44006 INTERGENIC
2L	9244884	2L_9244884_SNP [dm3] 2L_9244884_SNP [dm6]	G	A	2.842e^-4	0.942	INTRON tai
2R	16702943	2R_16702943_SNP [dm3] 2R_20815438_SNP [dm6]	C	T	2.858e^-4	0.942	INTERGENIC
2L	11415865	2L_11415865_SNP [dm3] 2L_11415865_SNP [dm6]	A	G	2.862e^-4	0.942	INTERGENIC
3L	12908247	3L_12908247_SNP [dm3] 3L_12915147_SNP [dm6]	C	G	2.862e^-4	0.942	INTERGENIC
2L	10910615	2L_10910615_SNP [dm3] 2L_10910615_SNP [dm6]	T	A	2.866e^-4	0.942	UTR_5_PRIME CG14069 UPSTREAM CG14069
3L	7221649	3L_7221649_SNP [dm3] 3L_7228549_SNP [dm6]	G	A	2.866e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17430603	2R_17430603_DEL [dm3] 2R_21543098_DEL [dm6]	CAGC	C	2.869e^-4	0.942	INTRON Egfr
2L	13441182	2L_13441182_SNP [dm3] 2L_13441182_SNP [dm6]	T	G	2.871e^-4	0.942	INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
3L	16759874	3L_16759874_SNP [dm3] 3L_16766774_SNP [dm6]	G	C	2.881e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759875	3L_16759875_SNP [dm3] 3L_16766775_SNP [dm6]	T	A	2.881e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759876	3L_16759876_INS [dm3] 3L_16766776_INS [dm6]	T	TAAA	2.881e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8909194	3R_8909194_DEL [dm3] 3R_13083472_DEL [dm6]	TC	T	2.886e^-4	0.942	INTERGENIC
2L	11745551	2L_11745551_SNP [dm3] 2L_11745551_SNP [dm6]	C	T	2.890e^-4	0.942	INTERGENIC
3R	11819324	3R_11819324_SNP [dm3] 3R_15993602_SNP [dm6]	T	A	2.899e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819325	3R_11819325_DEL [dm3] 3R_15993603_DEL [dm6]	ATGTGTATTTAAT...	A	2.899e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819341	3R_11819341_SNP [dm3] 3R_15993619_SNP [dm6]	T	A	2.899e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11819343	3R_11819343_DEL [dm3] 3R_15993621_DEL [dm6]	TTTA	T	2.899e^-4	0.942	UPSTREAM srp INTRON srp EXON CR44133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	16749783	2R_16749783_SNP [dm3] 2R_20862278_SNP [dm6]	C	T	2.918e^-4	0.942	INTERGENIC
3R	11425983	3R_11425983_SNP [dm3] 3R_15600261_SNP [dm6]	T	C	2.924e^-4	0.942	INTERGENIC
3L	14678818	3L_14678818_SNP [dm3] 3L_14685718_SNP [dm6]	T	C	2.927e^-4	0.942	UTR_3_PRIME CG5048 INTRON ome
3L	2642900	3L_2642900_SNP [dm3] 3L_2642900_SNP [dm6]	G	C	2.931e^-4	0.942	DOWNSTREAM MEP-1 & 1 other INTRON CG14949	TF binding site mE1_TFBS_cad
3R	10158531	3R_10158531_SNP [dm3] 3R_14332809_SNP [dm6]	C	T	2.936e^-4	0.942	INTRON NK7.1
2R	11976374	2R_11976374_SNP [dm3] 2R_16088869_SNP [dm6]	A	G	2.938e^-4	0.942	INTRON Dg
2R	12771003	2R_12771003_SNP [dm3] 2R_16883498_SNP [dm6]	G	A	2.940e^-4	0.942	SYNONYMOUS_CODING CG6472 INTRON CG8910	TF binding site mE1_TFBS_chinmo
3R	11402935	3R_11402935_SNP [dm3] 3R_15577213_SNP [dm6]	G	A	2.958e^-4	0.942	INTERGENIC
3L	11814023	3L_11814023_SNP [dm3] 3L_11820923_SNP [dm6]	A	G	2.966e^-4	0.942	SYNONYMOUS_CODING CG11597 UPSTREAM CG5946 INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13935670	2L_13935670_SNP [dm3] 2L_13935670_SNP [dm6]	C	T	2.967e^-4	0.942	UPSTREAM CG16885 INTRON Ance-3
2R	18367102	2R_18367102_SNP [dm3] 2R_22479597_SNP [dm6]	T	A	2.974e^-4	0.942	INTRON CG4752
2R	12033825	2R_12033825_SNP [dm3] 2R_16146320_SNP [dm6]	C	T	2.974e^-4	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3R	20354217	3R_20354217_SNP [dm3] 3R_24528495_SNP [dm6]	T	G	2.986e^-4	0.942	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13618	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5668191	3L_5668191_SNP [dm3] 3L_5675091_SNP [dm6]	C	A	2.993e^-4	0.942	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_chinmo
3R	3004559	3R_3004559_SNP [dm3] 3R_7178837_SNP [dm6]	G	A	3.002e^-4	0.942	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	3.024e^-4	0.942	INTRON Sema-2a
3L	8994995	3L_8994995_SNP [dm3] 3L_9001895_SNP [dm6]	G	A	3.028e^-4	0.942	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	14672975	3R_14672975_SNP [dm3] 3R_18847253_SNP [dm6]	T	A	3.032e^-4	0.942	INTRON CG18208
3R	14672976	3R_14672976_SNP [dm3] 3R_18847254_SNP [dm6]	T	A	3.032e^-4	0.942	INTRON CG18208
3R	25391415	3R_25391415_SNP [dm3] 3R_29565693_SNP [dm6]	T	A	3.034e^-4	0.942	DOWNSTREAM Dr INTERGENIC
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	3.036e^-4	0.942	INTRON CG13579
3R	11434604	3R_11434604_SNP [dm3] 3R_15608882_SNP [dm6]	C	A	3.043e^-4	0.942	INTERGENIC
3R	11434625	3R_11434625_SNP [dm3] 3R_15608903_SNP [dm6]	T	C	3.043e^-4	0.942	INTERGENIC
3R	11434671	3R_11434671_SNP [dm3] 3R_15608949_SNP [dm6]	G	A	3.043e^-4	0.942	INTERGENIC
X	21046317	X_21046317_SNP [dm3] X_21175290_SNP [dm6]	A	C	3.045e^-4	0.942	INTERGENIC
X	21046475	X_21046475_DEL [dm3] X_21175448_DEL [dm6]	TG	A	3.045e^-4	0.942	INTERGENIC
3R	24385629	3R_24385629_SNP [dm3] 3R_28559907_SNP [dm6]	G	A	3.049e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24385753	3R_24385753_SNP [dm3] 3R_28560031_SNP [dm6]	C	G	3.049e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	3.063e^-4	0.942	INTERGENIC
X	21047450	X_21047450_INS [dm3] X_21176423_INS [dm6]	A	AATC	3.067e^-4	0.942	INTERGENIC
2R	12762616	2R_12762616_SNP [dm3] 2R_16875111_SNP [dm6]	G	A	3.070e^-4	0.942	UTR_3_PRIME CG8910 DOWNSTREAM CG6435
3R	23035435	3R_23035435_SNP [dm3] 3R_27209713_SNP [dm6]	A	T	3.071e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	11353074	X_11353074_SNP [dm3] X_11459041_SNP [dm6]	T	C	3.083e^-4	0.942	UTR_3_PRIME HP5 UPSTREAM CG43155
3R	21895670	3R_21895670_SNP [dm3] 3R_26069948_SNP [dm6]	A	T	3.110e^-4	0.942	DOWNSTREAM CR44950 INTERGENIC
3R	7193114	3R_7193114_SNP [dm3] 3R_11367392_SNP [dm6]	A	G	3.113e^-4	0.942	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19364047	2L_19364047_SNP [dm3] 2L_19364047_SNP [dm6]	A	T	3.121e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	554745	2L_554745_SNP [dm3] 2L_554745_SNP [dm6]	A	G	3.121e^-4	0.942	SYNONYMOUS_CODING rempA
2R	15555788	2R_15555788_SNP [dm3] 2R_19668283_SNP [dm6]	T	G	3.124e^-4	0.942	UTR_5_PRIME hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15556292	2R_15556292_SNP [dm3] 2R_19668787_SNP [dm6]	T	A	3.124e^-4	0.942	INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	12844918	3R_12844918_DEL [dm3] 3R_17019196_DEL [dm6]	GTG	G	3.127e^-4	0.942	UTR_3_PRIME AdSL INTRON Pxd
3L	16759885	3L_16759885_SNP [dm3] 3L_16766785_SNP [dm6]	A	T	3.160e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759887	3L_16759887_SNP [dm3] 3L_16766787_SNP [dm6]	C	G	3.160e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759890	3L_16759890_INS [dm3] 3L_16766790_INS [dm6]	T	TTTGTGTCCC	3.160e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759892	3L_16759892_SNP [dm3] 3L_16766792_SNP [dm6]	A	C	3.160e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11052576	X_11052576_SNP [dm3] X_11158543_SNP [dm6]	T	A	3.161e^-4	0.942	NON_SYNONYMOUS_CODING CG32668 INTRON Dlic	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8954351	3L_8954351_SNP [dm3] 3L_8961251_SNP [dm6]	G	A	3.164e^-4	0.942	DOWNSTREAM CG5660 & 1 other INTERGENIC
2R	19980754	2R_19980754_SNP [dm3] 2R_24093231_SNP [dm6]	A	C	3.179e^-4	0.942	INTRON gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11311533	2R_11311533_DEL [dm3] 2R_15424028_DEL [dm6]	TTCCTTGGCAATT...	T	3.180e^-4	0.942	CODON_DELETION CG30472 UPSTREAM CG43729 INTRON CG43729
2L	10448101	2L_10448101_SNP [dm3] 2L_10448101_SNP [dm6]	G	C	3.182e^-4	0.942	SYNONYMOUS_CODING loh
2R	17964424	2R_17964424_SNP [dm3] 2R_22076919_SNP [dm6]	C	T	3.204e^-4	0.942	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16366209	2L_16366209_SNP [dm3] 2L_16366209_SNP [dm6]	G	A	3.206e^-4	0.942	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16270277	3R_16270277_SNP [dm3] 3R_20444555_SNP [dm6]	A	C	3.212e^-4	0.942	INTRON Gfrl
3R	25161815	3R_25161815_SNP [dm3] 3R_29336093_SNP [dm6]	C	T	3.215e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22888777	2L_22888777_SNP [dm3] 2L_22996045_SNP [dm6]	T	C	3.225e^-4	0.942	INTERGENIC
2L	19364168	2L_19364168_SNP [dm3] 2L_19364168_SNP [dm6]	A	C	3.231e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21903687	3R_21903687_SNP [dm3] 3R_26077965_SNP [dm6]	G	A	3.241e^-4	0.942	SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20215611	3R_20215611_SNP [dm3] 3R_24389889_SNP [dm6]	G	A	3.244e^-4	0.942	UPSTREAM CG13615 INTRON CG5768
3R	20215613	3R_20215613_SNP [dm3] 3R_24389891_SNP [dm6]	A	G	3.244e^-4	0.942	UPSTREAM CG13615 INTRON CG5768
X	21047303	X_21047303_SNP [dm3] X_21176276_SNP [dm6]	T	G	3.251e^-4	0.942	INTERGENIC
2R	13766470	2R_13766470_SNP [dm3] 2R_17878965_SNP [dm6]	T	C	3.257e^-4	0.942	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
2L	17466348	2L_17466348_SNP [dm3] 2L_17466348_SNP [dm6]	T	G	3.258e^-4	0.942	INTRON BicD
2L	10118445	2L_10118445_SNP [dm3] 2L_10118445_SNP [dm6]	T	A	3.268e^-4	0.942	INTRON CG44153 & 1 other	transposable element FlyBase
2L	15360251	2L_15360251_SNP [dm3] 2L_15360251_SNP [dm6]	A	G	3.270e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
2L	15360253	2L_15360253_DEL [dm3] 2L_15360253_DEL [dm6]	TA	T	3.270e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
3R	15794423	3R_15794423_DEL [dm3] 3R_19968701_DEL [dm6]	TT	T	3.270e^-4	0.942	INTRON Hs6st
3L	5511695	3L_5511695_DEL [dm3] 3L_5518595_DEL [dm6]	TA	G	3.275e^-4	0.942	UTR_5_PRIME Lkr
X	5083189	X_5083189_INS [dm3] X_5189156_INS [dm6]	T	CGTCG	3.279e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	3.282e^-4	0.942	INTRON CG1213
3L	4833036	3L_4833036_SNP [dm3] 3L_4833036_SNP [dm6]	T	C	3.286e^-4	0.942	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad
3R	11375463	3R_11375463_SNP [dm3] 3R_15549741_SNP [dm6]	C	G	3.288e^-4	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11375607	3R_11375607_SNP [dm3] 3R_15549885_SNP [dm6]	G	A	3.288e^-4	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
3R	23935635	3R_23935635_SNP [dm3] 3R_28109913_SNP [dm6]	T	G	3.288e^-4	0.942	INTERGENIC
3R	23935639	3R_23935639_SNP [dm3] 3R_28109917_SNP [dm6]	G	T	3.288e^-4	0.942	INTERGENIC
3R	23935642	3R_23935642_SNP [dm3] 3R_28109920_SNP [dm6]	T	C	3.288e^-4	0.942	INTERGENIC
2L	1302328	2L_1302328_SNP [dm3] 2L_1302328_SNP [dm6]	A	G	3.307e^-4	0.942	INTERGENIC
2L	11327368	2L_11327368_SNP [dm3] 2L_11327368_SNP [dm6]	A	T	3.315e^-4	0.942	INTERGENIC
2R	16481060	2R_16481060_SNP [dm3] 2R_20593555_SNP [dm6]	C	G	3.315e^-4	0.942	UPSTREAM bl INTRON bl
2L	1451842	2L_1451842_SNP [dm3] 2L_1451842_SNP [dm6]	G	T	3.323e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19084891	3R_19084891_SNP [dm3] 3R_23259169_SNP [dm6]	A	G	3.324e^-4	0.942	INTRON CG13827	TF binding site BDTNP1_TFBS_da
2R	7644813	2R_7644813_DEL [dm3] 2R_11757308_DEL [dm6]	AA	A	3.331e^-4	0.942	UTR_5_PRIME ths
3R	9659767	3R_9659767_SNP [dm3] 3R_13834045_SNP [dm6]	A	G	3.336e^-4	0.942	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	26687183	3R_26687183_SNP [dm3] 3R_30861461_SNP [dm6]	G	A	3.337e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	11378346	3L_11378346_SNP [dm3] 3L_11385246_SNP [dm6]	A	T	3.349e^-4	0.942	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3L	2105704	3L_2105704_SNP [dm3] 3L_2105704_SNP [dm6]	G	T	3.363e^-4	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25464897	3R_25464897_DEL [dm3] 3R_29639175_DEL [dm6]	TAT	T	3.379e^-4	0.942	INTRON Dop1R2
2L	15374847	2L_15374847_SNP [dm3] 2L_15374847_SNP [dm6]	T	G	3.385e^-4	0.942	INTERGENIC
X	19645350	X_19645350_SNP [dm3] X_19751317_SNP [dm6]	C	T	3.385e^-4	0.942	UTR_5_PRIME Pmp70 INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	23601204	3L_23601204_SNP [dm3] 3L_23608104_SNP [dm6]	T	A	3.385e^-4	0.942	INTRON AGO3
3R	14629014	3R_14629014_SNP [dm3] 3R_18803292_SNP [dm6]	T	A	3.390e^-4	0.942	UTR_3_PRIME CG18208
2R	10634105	2R_10634105_SNP [dm3] 2R_14746600_SNP [dm6]	A	G	3.401e^-4	0.942	UTR_3_PRIME Dro UPSTREAM AttA DOWNSTREAM Dro
3L	2043138	3L_2043138_SNP [dm3] 3L_2043138_SNP [dm6]	G	T	3.402e^-4	0.942	INTRON sls	TF binding site mE1_TFBS_cad
2R	7651320	2R_7651320_SNP [dm3] 2R_11763815_SNP [dm6]	A	G	3.403e^-4	0.942	INTRON ths
3L	4211906	3L_4211906_SNP [dm3] 3L_4211906_SNP [dm6]	C	G	3.416e^-4	0.942	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	13320542	3L_13320542_SNP [dm3] 3L_13327442_SNP [dm6]	T	A	3.422e^-4	0.942	INTERGENIC
2R	6784551	2R_6784551_SNP [dm3] 2R_10897046_SNP [dm6]	C	T	3.433e^-4	0.942	UTR_3_PRIME CG12942 DOWNSTREAM CG7712 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19890086	3R_19890086_SNP [dm3] 3R_24064364_SNP [dm6]	C	A	3.434e^-4	0.942	DOWNSTREAM 4EHP INTRON 4EHP
X	17781249	X_17781249_SNP [dm3] X_17887216_SNP [dm6]	A	T	3.442e^-4	0.942	UTR_5_PRIME mnb UPSTREAM CG6788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10724124	2L_10724124_SNP [dm3] 2L_10724124_SNP [dm6]	T	C	3.443e^-4	0.942	UPSTREAM CG6431 INTERGENIC
2R	17800912	2R_17800912_SNP [dm3] 2R_21913407_SNP [dm6]	A	C	3.443e^-4	0.942	INTRON Fili
3R	14672973	3R_14672973_SNP [dm3] 3R_18847251_SNP [dm6]	A	T	3.446e^-4	0.942	INTRON CG18208
3L	521428	3L_521428_SNP [dm3] 3L_521428_SNP [dm6]	G	T	3.452e^-4	0.942	INTRON klar
X	21047034	X_21047034_DEL [dm3] X_21176007_DEL [dm6]	CAAATTTTAGTGAGATTCCA...	G	3.455e^-4	0.942	INTERGENIC
3R	7312944	3R_7312944_INS [dm3] 3R_11487222_INS [dm6]	G	GGG	3.463e^-4	0.942	EXON CR45581
2R	12346500	2R_12346500_SNP [dm3] 2R_16458995_SNP [dm6]	G	T	3.491e^-4	0.942	INTERGENIC
X	16588567	X_16588567_SNP [dm3] X_16694534_SNP [dm6]	T	C	3.497e^-4	0.942	INTRON Sep4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12806436	X_12806436_SNP [dm3] X_12912403_SNP [dm6]	C	A	3.498e^-4	0.942	UPSTREAM CR45625 DOWNSTREAM CG4645 INTERGENIC
2L	990426	2L_990426_SNP [dm3] 2L_990426_SNP [dm6]	T	G	3.507e^-4	0.942	INTRON CR44801
2R	20824163	2R_20824163_SNP [dm3] 2R_24936640_SNP [dm6]	A	G	3.511e^-4	0.942	UPSTREAM CG30427 INTRON CG30427
2L	14802330	2L_14802330_SNP [dm3] 2L_14802330_SNP [dm6]	A	G	3.512e^-4	0.942	UPSTREAM CG33308 INTERGENIC
3R	22712105	3R_22712105_SNP [dm3] 3R_26886383_SNP [dm6]	A	G	3.514e^-4	0.942	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17303620	2R_17303620_SNP [dm3] 2R_21416115_SNP [dm6]	C	T	3.518e^-4	0.942	INTRON Sdc
2R	16503875	2R_16503875_SNP [dm3] 2R_20616370_SNP [dm6]	T	G	3.525e^-4	0.942	INTRON Hil
3L	5611304	3L_5611304_INS [dm3] 3L_5618204_INS [dm6]	T	GGTCTTAAATTGGATAAATA...	3.539e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16272043	3L_16272043_SNP [dm3] 3L_16278943_SNP [dm6]	G	A	3.542e^-4	0.942	SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
3L	16272046	3L_16272046_SNP [dm3] 3L_16278946_SNP [dm6]	A	G	3.542e^-4	0.942	SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
3R	22450027	3R_22450027_SNP [dm3] 3R_26624305_SNP [dm6]	A	T	3.547e^-4	0.942	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	9159175	2R_9159175_SNP [dm3] 2R_13271670_SNP [dm6]	G	T	3.555e^-4	0.942	INTRON Dh31-R
2L	10292540	2L_10292540_SNP [dm3] 2L_10292540_SNP [dm6]	A	T	3.557e^-4	0.942	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	18108040	3R_18108040_SNP [dm3] 3R_22282318_SNP [dm6]	A	G	3.562e^-4	0.942	INTRON SKIP
3R	24384209	3R_24384209_INS [dm3] 3R_28558487_INS [dm6]	T	TT	3.562e^-4	0.942	INTERGENIC
2R	3317628	2R_3317628_SNP [dm3] 2R_7430123_SNP [dm6]	T	A	3.563e^-4	0.942	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
3R	11157681	3R_11157681_SNP [dm3] 3R_15331959_SNP [dm6]	A	G	3.567e^-4	0.942	SYNONYMOUS_CODING FK506-bp1 DOWNSTREAM mRpL9
3L	16759880	3L_16759880_MNP [dm3] 3L_16766780_MNP [dm6]	TGA	AAT	3.571e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	3005087	3R_3005087_SNP [dm3] 3R_7179365_SNP [dm6]	T	C	3.573e^-4	0.942	INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8554927	2R_8554927_SNP [dm3] 2R_12667422_SNP [dm6]	C	A	3.591e^-4	0.942	INTRON nemy
3L	3024685	3L_3024685_SNP [dm3] 3L_3024685_SNP [dm6]	T	C	3.607e^-4	0.942	SYNONYMOUS_CODING aly
2L	1746707	2L_1746707_SNP [dm3] 2L_1746707_SNP [dm6]	T	C	3.613e^-4	0.942	INTRON CG17646
X	21047320	X_21047320_DEL [dm3] X_21176293_DEL [dm6]	GAC	G	3.616e^-4	0.942	INTERGENIC
3L	18116296	3L_18116296_SNP [dm3] 3L_18123196_SNP [dm6]	T	G	3.633e^-4	0.942	INTERGENIC
3R	21908926	3R_21908926_SNP [dm3] 3R_26083204_SNP [dm6]	A	G	3.635e^-4	0.942	INTRON dys
3L	11833195	3L_11833195_SNP [dm3] 3L_11840095_SNP [dm6]	A	C	3.638e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10632659	X_10632659_SNP [dm3] X_10738626_SNP [dm6]	A	C	3.644e^-4	0.942	INTRON CG32676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	5734792	2R_5734792_SNP [dm3] 2R_9847287_SNP [dm6]	G	A	3.647e^-4	0.942	SYNONYMOUS_CODING Prosalpha7 UPSTREAM Orc6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	5736846	2R_5736846_SNP [dm3] 2R_9849341_SNP [dm6]	T	C	3.647e^-4	0.942	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2R	5737096	2R_5737096_SNP [dm3] 2R_9849591_SNP [dm6]	C	T	3.647e^-4	0.942	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3R	14780882	3R_14780882_SNP [dm3] 3R_18955160_SNP [dm6]	C	A	3.654e^-4	0.942	INTRON CG42613 & 1 other
2R	8157082	2R_8157082_SNP [dm3] 2R_12269577_SNP [dm6]	A	T	3.658e^-4	0.942	INTRON Cam
3L	15875864	3L_15875864_DEL [dm3] 3L_15882764_DEL [dm6]	AA	A	3.666e^-4	0.942	INTRON pHCl
3L	23427008	3L_23427008_SNP [dm3] 3L_23433908_SNP [dm6]	C	T	3.668e^-4	0.942	INTERGENIC
3L	23427009	3L_23427009_SNP [dm3] 3L_23433909_SNP [dm6]	A	C	3.668e^-4	0.942	INTERGENIC
3L	23427013	3L_23427013_SNP [dm3] 3L_23433913_SNP [dm6]	A	T	3.668e^-4	0.942	INTERGENIC
2L	8438087	2L_8438087_SNP [dm3] 2L_8438087_SNP [dm6]	G	T	3.668e^-4	0.942	UPSTREAM mus201 & 1 other DOWNSTREAM Chrac-14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3L	9552297	3L_9552297_SNP [dm3] 3L_9559197_SNP [dm6]	A	T	3.674e^-4	0.942	INTRON CG42673
3L	9552309	3L_9552309_SNP [dm3] 3L_9559209_SNP [dm6]	T	G	3.674e^-4	0.942	INTRON CG42673
X	3247070	X_3247070_SNP [dm3] X_3353037_SNP [dm6]	T	C	3.679e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
3R	11425146	3R_11425146_SNP [dm3] 3R_15599424_SNP [dm6]	A	T	3.681e^-4	0.942	INTERGENIC
2R	12229495	2R_12229495_SNP [dm3] 2R_16341990_SNP [dm6]	T	G	3.701e^-4	0.942	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14092972	3R_14092972_SNP [dm3] 3R_18267250_SNP [dm6]	T	C	3.701e^-4	0.942	UPSTREAM CG18599 INTERGENIC
3L	8770722	3L_8770722_SNP [dm3] 3L_8777622_SNP [dm6]	G	C	3.716e^-4	0.942	INTRON Fhos
X	18073716	X_18073716_SNP [dm3] X_18179683_SNP [dm6]	G	A	3.718e^-4	0.942	UPSTREAM Andorra INTRON Frq2
3R	10983161	3R_10983161_SNP [dm3] 3R_15157439_SNP [dm6]	T	G	3.720e^-4	0.942	INTRON Gyc88E
2R	18367435	2R_18367435_SNP [dm3] 2R_22479930_SNP [dm6]	T	C	3.723e^-4	0.942	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20500675	2L_20500675_SNP [dm3] 2L_20500675_SNP [dm6]	C	G	3.732e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11400817	3R_11400817_SNP [dm3] 3R_15575095_SNP [dm6]	C	T	3.734e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4090305	2L_4090305_SNP [dm3] 2L_4090305_SNP [dm6]	C	T	3.741e^-4	0.942	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22847467	3R_22847467_SNP [dm3] 3R_27021745_SNP [dm6]	C	T	3.743e^-4	0.942	UPSTREAM CG6283 DOWNSTREAM CG6277 INTRON RYa-R
X	12390753	X_12390753_SNP [dm3] X_12496720_SNP [dm6]	C	A	3.755e^-4	0.942	UPSTREAM CG2556 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	12585795	3L_12585795_SNP [dm3] 3L_12592695_SNP [dm6]	A	C	3.767e^-4	0.942	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19436431	2L_19436431_SNP [dm3] 2L_19436431_SNP [dm6]	C	A	3.768e^-4	0.942	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
3L	18061638	3L_18061638_SNP [dm3] 3L_18068538_SNP [dm6]	T	G	3.771e^-4	0.942	DOWNSTREAM CG44006 INTERGENIC
2R	10584746	2R_10584746_SNP [dm3] 2R_14697241_SNP [dm6]	C	G	3.792e^-4	0.942	INTRON mspo
3L	11703507	3L_11703507_SNP [dm3] 3L_11710407_SNP [dm6]	G	T	3.795e^-4	0.942	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11042917	3R_11042917_SNP [dm3] 3R_15217195_SNP [dm6]	G	A	3.796e^-4	0.942	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
X	13378063	X_13378063_SNP [dm3] X_13484030_SNP [dm6]	C	T	3.803e^-4	0.942	INTRON Neto
2L	18566916	2L_18566916_SNP [dm3] 2L_18566916_SNP [dm6]	A	G	3.804e^-4	0.942	INTRON Pde11
3R	25733501	3R_25733501_SNP [dm3] 3R_29907779_SNP [dm6]	T	C	3.806e^-4	0.942	UPSTREAM CG31036 INTERGENIC
3R	20353860	3R_20353860_SNP [dm3] 3R_24528138_SNP [dm6]	C	T	3.813e^-4	0.942	UTR_5_PRIME CG6607 DOWNSTREAM CG13618	TF binding site mE1_TFBS_cad
3R	25209750	3R_25209750_SNP [dm3] 3R_29384028_SNP [dm6]	A	G	3.817e^-4	0.942	INTRON Ptp99A	TF binding site mE1_TFBS_eve
3R	13684631	3R_13684631_SNP [dm3] 3R_17858909_SNP [dm6]	A	G	3.823e^-4	0.942	INTRON tinc
3R	17842994	3R_17842994_SNP [dm3] 3R_22017272_SNP [dm6]	A	T	3.830e^-4	0.942	INTRON CG6439	TF binding site mE1_TFBS_sens
3L	8696265	3L_8696265_INS [dm3] 3L_8703165_INS [dm6]	A	AA	3.842e^-4	0.942	INTERGENIC
2R	4909988	2R_4909988_SNP [dm3] 2R_9022483_SNP [dm6]	C	T	3.848e^-4	0.942	NON_SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14336604	3L_14336604_SNP [dm3] 3L_14343504_SNP [dm6]	C	A	3.849e^-4	0.942	INTRON fz
X	7727307	X_7727307_SNP [dm3] X_7833274_SNP [dm6]	G	C	3.851e^-4	0.942	INTRON CG1402
2L	19364040	2L_19364040_SNP [dm3] 2L_19364040_SNP [dm6]	A	G	3.868e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13577526	3R_13577526_SNP [dm3] 3R_17751804_SNP [dm6]	C	G	3.879e^-4	0.942	UTR_3_PRIME TyrR
2L	19363657	2L_19363657_SNP [dm3] 2L_19363657_SNP [dm6]	C	T	3.885e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12163831	2L_12163831_SNP [dm3] 2L_12163831_SNP [dm6]	G	A	3.909e^-4	0.942	UPSTREAM ZnT33D INTRON CG31760
2L	12163843	2L_12163843_SNP [dm3] 2L_12163843_SNP [dm6]	A	T	3.909e^-4	0.942	UPSTREAM ZnT33D INTRON CG31760
2R	10588681	2R_10588681_SNP [dm3] 2R_14701176_SNP [dm6]	G	A	3.914e^-4	0.942	INTRON mspo
2L	19320585	2L_19320585_SNP [dm3] 2L_19320585_SNP [dm6]	C	G	3.918e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	9928632	2L_9928632_SNP [dm3] 2L_9928632_SNP [dm6]	T	A	3.923e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	9928646	2L_9928646_SNP [dm3] 2L_9928646_SNP [dm6]	A	C	3.923e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
3L	15897435	3L_15897435_SNP [dm3] 3L_15904335_SNP [dm6]	T	C	3.935e^-4	0.942	SYNONYMOUS_CODING sff
3R	25904436	3R_25904436_SNP [dm3] 3R_30078714_SNP [dm6]	T	C	3.937e^-4	0.942	INTRON sima
2R	7153186	2R_7153186_SNP [dm3] 2R_11265681_SNP [dm6]	C	T	3.944e^-4	0.942	SYNONYMOUS_CODING Cpr47Ee	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13787937	2R_13787937_SNP [dm3] 2R_17900432_SNP [dm6]	T	C	3.946e^-4	0.942	INTRON Elk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	17466349	2L_17466349_SNP [dm3] 2L_17466349_SNP [dm6]	A	C	3.947e^-4	0.942	INTRON BicD
2R	12574029	2R_12574029_SNP [dm3] 2R_16686524_SNP [dm6]	C	A	3.957e^-4	0.942	INTRON CG30463
2L	4241816	2L_4241816_SNP [dm3] 2L_4241816_SNP [dm6]	T	C	3.957e^-4	0.942	UPSTREAM CR45720 DOWNSTREAM CR44058 INTRON CR44058
3R	25270717	3R_25270717_SNP [dm3] 3R_29444995_SNP [dm6]	C	T	3.961e^-4	0.942	INTRON Ptp99A
2R	7655551	2R_7655551_SNP [dm3] 2R_11768046_SNP [dm6]	T	C	3.968e^-4	0.942	UPSTREAM CG13193 INTRON ths
3R	20224047	3R_20224047_SNP [dm3] 3R_24398325_SNP [dm6]	A	T	3.977e^-4	0.942	UTR_3_PRIME nAChRalpha1
3L	11833289	3L_11833289_SNP [dm3] 3L_11840189_SNP [dm6]	A	T	3.978e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16503973	2R_16503973_INS [dm3] 2R_20616468_INS [dm6]	A	AA	3.979e^-4	0.942	INTRON Hil
3R	10655205	3R_10655205_SNP [dm3] 3R_14829483_SNP [dm6]	C	T	3.980e^-4	0.942	INTRON btsz
X	10803217	X_10803217_SNP [dm3] X_10909184_SNP [dm6]	C	T	4.005e^-4	0.942	INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	9974735	3R_9974735_SNP [dm3] 3R_14149013_SNP [dm6]	T	G	4.011e^-4	0.942	SYNONYMOUS_CODING CG14355
2R	9006915	2R_9006915_SNP [dm3] 2R_13119410_SNP [dm6]	G	A	4.020e^-4	0.942	INTRON CG13325
3R	18910908	3R_18910908_SNP [dm3] 3R_23085186_SNP [dm6]	G	A	4.029e^-4	0.942	INTRON CG13830
3R	18910961	3R_18910961_SNP [dm3] 3R_23085239_SNP [dm6]	A	C	4.029e^-4	0.942	INTRON CG13830
3R	18910963	3R_18910963_SNP [dm3] 3R_23085241_SNP [dm6]	G	A	4.029e^-4	0.942	INTRON CG13830
3R	12578690	3R_12578690_SNP [dm3] 3R_16752968_SNP [dm6]	A	C	4.054e^-4	0.942	UPSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20139493	2L_20139493_SNP [dm3] 2L_20139493_SNP [dm6]	A	G	4.060e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8931419	3R_8931419_SNP [dm3] 3R_13105697_SNP [dm6]	G	T	4.063e^-4	0.942	INTRON timeout
X	16875326	X_16875326_DEL [dm3] X_16981293_DEL [dm6]	TAT	T	4.077e^-4	0.942	INTRON CG45002
2R	17721537	2R_17721537_SNP [dm3] 2R_21834032_SNP [dm6]	A	C	4.098e^-4	0.942	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2L	11098120	2L_11098120_SNP [dm3] 2L_11098120_SNP [dm6]	C	T	4.099e^-4	0.942	SYNONYMOUS_CODING Ge-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20424945	3R_20424945_SNP [dm3] 3R_24599223_SNP [dm6]	A	C	4.111e^-4	0.942	INTRON mld	TF binding site mE1_TFBS_HSA
X	10804773	X_10804773_SNP [dm3] X_10910740_SNP [dm6]	G	C	4.116e^-4	0.942	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15944687	3L_15944687_SNP [dm3] 3L_15951587_SNP [dm6]	A	T	4.117e^-4	0.942	INTRON Pka-C3
2L	21163198	2L_21163198_SNP [dm3] 2L_21163198_SNP [dm6]	A	T	4.124e^-4	0.942	UPSTREAM CG9246 & 1 other DOWNSTREAM CR44910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4886565	2R_4886565_SNP [dm3] 2R_8999060_SNP [dm6]	T	C	4.124e^-4	0.942	INTRON Np
2R	12409864	2R_12409864_SNP [dm3] 2R_16522359_SNP [dm6]	C	A	4.135e^-4	0.942	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
2L	15934414	2L_15934414_SNP [dm3] 2L_15934414_SNP [dm6]	G	A	4.142e^-4	0.942	INTRON beat-Ib
3R	25725233	3R_25725233_DEL [dm3] 3R_29899511_DEL [dm6]	TGT	T	4.143e^-4	0.942	DOWNSTREAM CG31038 INTRON CG31038
2R	11479360	2R_11479360_SNP [dm3] 2R_15591855_SNP [dm6]	T	C	4.165e^-4	0.942	INTERGENIC
X	11676933	X_11676933_SNP [dm3] X_11782900_SNP [dm6]	A	G	4.166e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8554956	2R_8554956_SNP [dm3] 2R_12667451_SNP [dm6]	G	T	4.169e^-4	0.942	INTRON nemy
3L	17940730	3L_17940730_SNP [dm3] 3L_17947630_SNP [dm6]	G	C	4.180e^-4	0.942	EXON CR45393
X	21046467	X_21046467_SNP [dm3] X_21175440_SNP [dm6]	T	C	4.181e^-4	0.942	INTERGENIC
3R	18460096	3R_18460096_SNP [dm3] 3R_22634374_SNP [dm6]	C	A	4.192e^-4	0.942	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21891678	3R_21891678_SNP [dm3] 3R_26065956_SNP [dm6]	T	C	4.211e^-4	0.942	INTERGENIC
2L	19360746	2L_19360746_SNP [dm3] 2L_19360746_SNP [dm6]	A	C	4.212e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9673294	3R_9673294_SNP [dm3] 3R_13847572_SNP [dm6]	T	A	4.224e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14470032	2L_14470032_DEL [dm3] 2L_14470032_DEL [dm6]	GA	G	4.230e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7221527	3L_7221527_SNP [dm3] 3L_7228427_SNP [dm6]	G	A	4.237e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7221549	3L_7221549_SNP [dm3] 3L_7228449_SNP [dm6]	G	A	4.237e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7221609	3L_7221609_SNP [dm3] 3L_7228509_SNP [dm6]	T	C	4.237e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7221617	3L_7221617_SNP [dm3] 3L_7228517_SNP [dm6]	A	G	4.237e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18104628	3R_18104628_SNP [dm3] 3R_22278906_SNP [dm6]	C	A	4.238e^-4	0.942	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2L	15360257	2L_15360257_SNP [dm3] 2L_15360257_SNP [dm6]	T	G	4.259e^-4	0.942	DOWNSTREAM CG15258 INTERGENIC
3R	19306698	3R_19306698_SNP [dm3] 3R_23480976_SNP [dm6]	A	T	4.264e^-4	0.942	UPSTREAM Ir94f INTERGENIC
2R	8629830	2R_8629830_SNP [dm3] 2R_12742325_SNP [dm6]	G	A	4.268e^-4	0.942	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2173768	3L_2173768_SNP [dm3] 3L_2173768_SNP [dm6]	G	A	4.268e^-4	0.942	NON_SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
X	10112010	X_10112010_SNP [dm3] X_10217977_SNP [dm6]	T	A	4.270e^-4	0.942	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	17719812	3R_17719812_SNP [dm3] 3R_21894090_SNP [dm6]	G	A	4.271e^-4	0.942	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13829906	2R_13829906_SNP [dm3] 2R_17942401_SNP [dm6]	G	T	4.275e^-4	0.942	INTERGENIC
3R	21896860	3R_21896860_SNP [dm3] 3R_26071138_SNP [dm6]	T	A	4.297e^-4	0.942	EXON CR44950
3R	21896865	3R_21896865_SNP [dm3] 3R_26071143_SNP [dm6]	T	A	4.297e^-4	0.942	EXON CR44950
3R	21896919	3R_21896919_SNP [dm3] 3R_26071197_SNP [dm6]	C	G	4.297e^-4	0.942	EXON CR44950
3R	13736186	3R_13736186_SNP [dm3] 3R_17910464_SNP [dm6]	A	T	4.328e^-4	0.942	UPSTREAM CG43445 INTRON Rim
2L	14388790	2L_14388790_SNP [dm3] 2L_14388790_SNP [dm6]	T	G	4.340e^-4	0.942	INTERGENIC
3R	13750932	3R_13750932_SNP [dm3] 3R_17925210_SNP [dm6]	A	G	4.340e^-4	0.942	INTRON cpo
2R	14599383	2R_14599383_SNP [dm3] 2R_18711878_SNP [dm6]	T	A	4.340e^-4	0.942	EXON pncr016:2R
X	20968150	X_20968150_SNP [dm3] X_21097123_SNP [dm6]	G	T	4.360e^-4	0.942	INTRON stg1 & 2 others	transposable element FlyBase
2L	19344749	2L_19344749_SNP [dm3] 2L_19344749_SNP [dm6]	T	C	4.366e^-4	0.942	INTRON dnt	TF binding site BDTNP1_TFBS_dl
3L	5483985	3L_5483985_SNP [dm3] 3L_5490885_SNP [dm6]	T	A	4.366e^-4	0.942	INTERGENIC
3R	11469768	3R_11469768_SNP [dm3] 3R_15644046_SNP [dm6]	A	T	4.375e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13683436	2R_13683436_SNP [dm3] 2R_17795931_SNP [dm6]	A	T	4.393e^-4	0.942	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17463951	2R_17463951_SNP [dm3] 2R_21576446_SNP [dm6]	C	T	4.394e^-4	0.942	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8666269	3L_8666269_SNP [dm3] 3L_8673169_SNP [dm6]	A	C	4.394e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11833999	3R_11833999_SNP [dm3] 3R_16008277_SNP [dm6]	C	A	4.395e^-4	0.942	UPSTREAM CR42839 & 1 other INTERGENIC
2L	10249811	2L_10249811_SNP [dm3] 2L_10249811_SNP [dm6]	C	G	4.401e^-4	0.942	UPSTREAM bsk & 1 other INTRON bsk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10928249	3R_10928249_SNP [dm3] 3R_15102527_SNP [dm6]	A	G	4.402e^-4	0.942	INTRON CG42788
3L	18682301	3L_18682301_SNP [dm3] 3L_18689201_SNP [dm6]	T	C	4.405e^-4	0.942	INTERGENIC
3L	18682342	3L_18682342_DEL [dm3] 3L_18689242_DEL [dm6]	AGTCA	A	4.405e^-4	0.942	INTERGENIC
3R	23364643	3R_23364643_SNP [dm3] 3R_27538921_SNP [dm6]	C	T	4.428e^-4	0.942	EXON CR44288
3R	23161708	3R_23161708_DEL [dm3] 3R_27335986_DEL [dm6]	GCTTTGGCCACGCCTCGAGC...	G	4.428e^-4	0.942	INTERGENIC
2L	15617222	2L_15617222_SNP [dm3] 2L_15617222_SNP [dm6]	T	C	4.440e^-4	0.942	UPSTREAM CG15253 INTRON CG11865
3R	11077383	3R_11077383_SNP [dm3] 3R_15251661_SNP [dm6]	T	C	4.447e^-4	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12033450	2R_12033450_SNP [dm3] 2R_16145945_SNP [dm6]	G	C	4.450e^-4	0.942	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
2L	1282768	2L_1282768_SNP [dm3] 2L_1282768_SNP [dm6]	G	T	4.452e^-4	0.942	INTRON robo3
3L	16759894	3L_16759894_SNP [dm3] 3L_16766794_SNP [dm6]	G	C	4.464e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16759898	3L_16759898_INS [dm3] 3L_16766798_INS [dm6]	T	TTTATTGAAA	4.464e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16875513	X_16875513_SNP [dm3] X_16981480_SNP [dm6]	T	C	4.469e^-4	0.942	INTRON CG45002
3L	10013783	3L_10013783_SNP [dm3] 3L_10020683_SNP [dm6]	A	T	4.472e^-4	0.942	INTRON dpr6
3R	23912018	3R_23912018_SNP [dm3] 3R_28086296_SNP [dm6]	T	A	4.472e^-4	0.942	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
3L	5511710	3L_5511710_SNP [dm3] 3L_5518610_SNP [dm6]	A	G	4.473e^-4	0.942	UTR_5_PRIME Lkr
2R	17293421	2R_17293421_SNP [dm3] 2R_21405916_SNP [dm6]	G	A	4.474e^-4	0.942	INTRON Sdc
2R	15565968	2R_15565968_SNP [dm3] 2R_19678463_SNP [dm6]	A	G	4.477e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15565969	2R_15565969_SNP [dm3] 2R_19678464_SNP [dm6]	G	C	4.477e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10438047	2R_10438047_DEL [dm3] 2R_14550542_DEL [dm6]	CGGATACAGA	C	4.484e^-4	0.942	INTRON ttv
3L	10102482	3L_10102482_SNP [dm3] 3L_10109382_SNP [dm6]	C	T	4.491e^-4	0.942	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	15795024	3R_15795024_SNP [dm3] 3R_19969302_SNP [dm6]	T	C	4.496e^-4	0.942	INTRON Hs6st
3L	12420333	3L_12420333_SNP [dm3] 3L_12427233_SNP [dm6]	A	T	4.514e^-4	0.942	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14333585	3L_14333585_SNP [dm3] 3L_14340485_SNP [dm6]	C	T	4.519e^-4	0.942	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14333588	3L_14333588_SNP [dm3] 3L_14340488_SNP [dm6]	A	T	4.519e^-4	0.942	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	4.525e^-4	0.942	INTRON rgn
X	10808008	X_10808008_SNP [dm3] X_10913975_SNP [dm6]	A	G	4.529e^-4	0.942	INTRON CG43901
3R	26678407	3R_26678407_SNP [dm3] 3R_30852685_SNP [dm6]	A	G	4.529e^-4	0.942	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9552264	3L_9552264_SNP [dm3] 3L_9559164_SNP [dm6]	G	A	4.533e^-4	0.942	INTRON CG42673
3L	9552322	3L_9552322_SNP [dm3] 3L_9559222_SNP [dm6]	A	T	4.533e^-4	0.942	INTRON CG42673
X	21046491	X_21046491_SNP [dm3] X_21175464_SNP [dm6]	C	A	4.535e^-4	0.942	INTERGENIC
2R	17886746	2R_17886746_SNP [dm3] 2R_21999241_SNP [dm6]	A	G	4.542e^-4	0.942	INTRON CG34370
2R	14599379	2R_14599379_SNP [dm3] 2R_18711874_SNP [dm6]	A	G	4.544e^-4	0.942	EXON pncr016:2R
2R	14599390	2R_14599390_SNP [dm3] 2R_18711885_SNP [dm6]	A	T	4.544e^-4	0.942	EXON pncr016:2R
2R	14599392	2R_14599392_SNP [dm3] 2R_18711887_SNP [dm6]	C	T	4.544e^-4	0.942	EXON pncr016:2R
2R	14599400	2R_14599400_SNP [dm3] 2R_18711895_SNP [dm6]	C	T	4.544e^-4	0.942	EXON pncr016:2R
2R	14599409	2R_14599409_SNP [dm3] 2R_18711904_SNP [dm6]	T	C	4.544e^-4	0.942	EXON pncr016:2R
3R	11434550	3R_11434550_SNP [dm3] 3R_15608828_SNP [dm6]	C	T	4.557e^-4	0.942	INTERGENIC
3L	14071478	3L_14071478_DEL [dm3] 3L_14078378_DEL [dm6]	CC	C	4.561e^-4	0.942	INTRON btl	regulatory region REDfly_CRMs
3L	9552281	3L_9552281_SNP [dm3] 3L_9559181_SNP [dm6]	G	T	4.561e^-4	0.942	INTRON CG42673
3R	11819006	3R_11819006_SNP [dm3] 3R_15993284_SNP [dm6]	T	C	4.562e^-4	0.942	UTR_5_PRIME srp UPSTREAM srp EXON CR44133	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	11819017	3R_11819017_SNP [dm3] 3R_15993295_SNP [dm6]	G	A	4.562e^-4	0.942	UTR_5_PRIME srp UPSTREAM srp EXON CR44133	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8440538	2L_8440538_SNP [dm3] 2L_8440538_SNP [dm6]	A	G	4.564e^-4	0.942	SYNONYMOUS_CODING mus201
2L	955580	2L_955580_SNP [dm3] 2L_955580_SNP [dm6]	G	A	4.572e^-4	0.942	INTRON CG4341
3L	1723074	3L_1723074_DEL [dm3] 3L_1723074_DEL [dm6]	TT	T	4.587e^-4	0.942	UTR_5_PRIME CG18171 INTRON drpr
3L	23683710	3L_23683710_SNP [dm3] 3L_23690610_SNP [dm6]	C	T	4.588e^-4	0.942	DOWNSTREAM CR45174 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	10385971	2L_10385971_INS [dm3] 2L_10385971_INS [dm6]	A	AAA	4.600e^-4	0.942	UPSTREAM mRpS7 INTRON cdc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10385987	2L_10385987_SNP [dm3] 2L_10385987_SNP [dm6]	G	A	4.600e^-4	0.942	UPSTREAM mRpS7 INTRON cdc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15877798	3L_15877798_SNP [dm3] 3L_15884698_SNP [dm6]	T	G	4.601e^-4	0.942	INTRON pHCl EXON CR44050
3L	3780020	3L_3780020_SNP [dm3] 3L_3780020_SNP [dm6]	G	A	4.607e^-4	0.942	INTRON CG32264
3R	14092346	3R_14092346_DEL [dm3] 3R_18266624_DEL [dm6]	TC	T	4.611e^-4	0.942	INTERGENIC
X	2823177	X_2823177_SNP [dm3] X_2929144_SNP [dm6]	T	A	4.615e^-4	0.942	UPSTREAM CG32793 INTRON kirre
3R	11693391	3R_11693391_SNP [dm3] 3R_15867669_SNP [dm6]	G	A	4.627e^-4	0.942	INTRON CG31183
2R	17772245	2R_17772245_SNP [dm3] 2R_21884740_SNP [dm6]	C	G	4.631e^-4	0.942	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22317325	3L_22317325_SNP [dm3] 3L_22324225_SNP [dm6]	C	T	4.637e^-4	0.942	INTRON Ten-m
3R	23928986	3R_23928986_SNP [dm3] 3R_28103264_SNP [dm6]	T	G	4.637e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11378363	3L_11378363_SNP [dm3] 3L_11385263_SNP [dm6]	G	T	4.651e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15432697	3R_15432697_DEL [dm3] 3R_19606975_DEL [dm6]	ATATATATATATATA...	A	4.656e^-4	0.942	UPSTREAM CG17751 DOWNSTREAM CG7342 INTERGENIC
3R	16596898	3R_16596898_SNP [dm3] 3R_20771176_SNP [dm6]	G	A	4.672e^-4	0.942	SYNONYMOUS_CODING Takl1 INTRON Syp	TF binding site mE1_TFBS_cad
3L	9576228	3L_9576228_SNP [dm3] 3L_9583128_SNP [dm6]	C	T	4.672e^-4	0.942	UPSTREAM CG42673 INTRON CG42673
3R	11412154	3R_11412154_SNP [dm3] 3R_15586432_SNP [dm6]	G	A	4.674e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12346495	2R_12346495_SNP [dm3] 2R_16458990_SNP [dm6]	T	C	4.696e^-4	0.942	INTERGENIC
2R	12346499	2R_12346499_SNP [dm3] 2R_16458994_SNP [dm6]	C	T	4.696e^-4	0.942	INTERGENIC
X	4631578	X_4631578_SNP [dm3] X_4737545_SNP [dm6]	T	C	4.712e^-4	0.942	INTERGENIC
3R	14650959	3R_14650959_SNP [dm3] 3R_18825237_SNP [dm6]	A	G	4.726e^-4	0.942	INTRON CG18208
2R	15161569	2R_15161569_SNP [dm3] 2R_19274064_SNP [dm6]	T	G	4.728e^-4	0.942	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	21046504	X_21046504_SNP [dm3] X_21175477_SNP [dm6]	C	T	4.734e^-4	0.942	INTERGENIC
3R	13681407	3R_13681407_SNP [dm3] 3R_17855685_SNP [dm6]	G	A	4.735e^-4	0.942	INTRON tinc
3L	12965613	3L_12965613_SNP [dm3] 3L_12972513_SNP [dm6]	A	C	4.742e^-4	0.942	UTR_5_PRIME CG10749 UPSTREAM CG10748
3R	14973644	3R_14973644_SNP [dm3] 3R_19147922_SNP [dm6]	T	G	4.759e^-4	0.942	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19102704	X_19102704_SNP [dm3] X_19208671_SNP [dm6]	G	C	4.764e^-4	0.942	UPSTREAM Ulp1 DOWNSTREAM CG14195 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20500676	2L_20500676_SNP [dm3] 2L_20500676_SNP [dm6]	A	T	4.770e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad
X	6732107	X_6732107_SNP [dm3] X_6838074_SNP [dm6]	A	C	4.778e^-4	0.942	UTR_3_PRIME nonC DOWNSTREAM CG14435 & 1 other
3L	18107837	3L_18107837_SNP [dm3] 3L_18114737_SNP [dm6]	C	G	4.780e^-4	0.942	SYNONYMOUS_CODING CG32195 INTRON CG7341	TF binding site mE1_TFBS_sens
3R	9821265	3R_9821265_SNP [dm3] 3R_13995543_SNP [dm6]	G	C	4.781e^-4	0.942	INTRON rdx
X	11694533	X_11694533_SNP [dm3] X_11800500_SNP [dm6]	C	A	4.782e^-4	0.942	UTR_3_PRIME CkIIbeta
3L	4814253	3L_4814253_SNP [dm3] 3L_4814253_SNP [dm6]	T	C	4.785e^-4	0.942	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	918729	3R_918729_SNP [dm3] 3R_5093007_SNP [dm6]	A	T	4.786e^-4	0.942	INTERGENIC
3L	3534454	3L_3534454_SNP [dm3] 3L_3534454_SNP [dm6]	G	A	4.793e^-4	0.942	INTRON Eip63E
3R	21891718	3R_21891718_SNP [dm3] 3R_26065996_SNP [dm6]	G	A	4.802e^-4	0.942	INTERGENIC
3R	12905553	3R_12905553_SNP [dm3] 3R_17079831_SNP [dm6]	T	C	4.818e^-4	0.942	UTR_5_PRIME Keap1 UPSTREAM kuk INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	21046501	X_21046501_SNP [dm3] X_21175474_SNP [dm6]	G	A	4.827e^-4	0.942	INTERGENIC
3R	24082226	3R_24082226_SNP [dm3] 3R_28256504_SNP [dm6]	A	G	4.828e^-4	0.942	INTERGENIC
2L	14732824	2L_14732824_SNP [dm3] 2L_14732824_SNP [dm6]	C	T	4.833e^-4	0.942	EXON CR44857
2L	15616909	2L_15616909_INS [dm3] 2L_15616909_INS [dm6]	C	CC	4.838e^-4	0.942	UPSTREAM CG11865 & 1 other INTERGENIC
3L	7221624	3L_7221624_SNP [dm3] 3L_7228524_SNP [dm6]	A	G	4.838e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11458238	3L_11458238_SNP [dm3] 3L_11465138_SNP [dm6]	G	A	4.844e^-4	0.942	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458242	3L_11458242_SNP [dm3] 3L_11465142_SNP [dm6]	A	T	4.844e^-4	0.942	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458528	3L_11458528_SNP [dm3] 3L_11465428_SNP [dm6]	T	A	4.844e^-4	0.942	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458554	3L_11458554_SNP [dm3] 3L_11465454_SNP [dm6]	G	T	4.844e^-4	0.942	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458555	3L_11458555_SNP [dm3] 3L_11465455_SNP [dm6]	C	G	4.844e^-4	0.942	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458557	3L_11458557_SNP [dm3] 3L_11465457_SNP [dm6]	T	A	4.844e^-4	0.942	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	21046412	X_21046412_SNP [dm3] X_21175385_SNP [dm6]	T	C	4.849e^-4	0.942	INTERGENIC
3L	9552285	3L_9552285_SNP [dm3] 3L_9559185_SNP [dm6]	T	C	4.867e^-4	0.942	INTRON CG42673
2L	3766428	2L_3766428_SNP [dm3] 2L_3766428_SNP [dm6]	C	T	4.886e^-4	0.942	NON_SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3R	17807059	3R_17807059_SNP [dm3] 3R_21981337_SNP [dm6]	A	C	4.893e^-4	0.942	INTRON Eip93F
3R	20098687	3R_20098687_SNP [dm3] 3R_24272965_SNP [dm6]	T	G	4.918e^-4	0.942	UPSTREAM Orct2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11434660	3R_11434660_SNP [dm3] 3R_15608938_SNP [dm6]	A	G	4.918e^-4	0.942	INTERGENIC
X	18190300	X_18190300_SNP [dm3] X_18296267_SNP [dm6]	G	A	4.936e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17719716	3R_17719716_SNP [dm3] 3R_21893994_SNP [dm6]	C	T	4.955e^-4	0.942	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2770025	3L_2770025_SNP [dm3] 3L_2770025_SNP [dm6]	T	A	4.961e^-4	0.942	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3779539	3L_3779539_SNP [dm3] 3L_3779539_SNP [dm6]	T	A	4.963e^-4	0.942	INTRON CG32264
3L	3723324	3L_3723324_INS [dm3] 3L_3723324_INS [dm6]	G	GGTGTAGG	4.971e^-4	0.942	INTRON CG32264
X	5083127	X_5083127_INS [dm3] X_5189094_INS [dm6]	A	GGT	4.974e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
X	5083142	X_5083142_SNP [dm3] X_5189109_SNP [dm6]	A	G	4.974e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
X	5083198	X_5083198_SNP [dm3] X_5189165_SNP [dm6]	A	G	4.974e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
X	5083201	X_5083201_SNP [dm3] X_5189168_SNP [dm6]	A	G	4.974e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
X	2822065	X_2822065_SNP [dm3] X_2928032_SNP [dm6]	T	A	4.987e^-4	0.942	UPSTREAM CG14424 INTRON kirre
2R	20333465	2R_20333465_SNP [dm3] 2R_24445942_SNP [dm6]	C	T	4.998e^-4	0.942	SYNONYMOUS_CODING CG3483	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9928636	2L_9928636_SNP [dm3] 2L_9928636_SNP [dm6]	T	A	5.006e^-4	0.942	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
3R	11157399	3R_11157399_SNP [dm3] 3R_15331677_SNP [dm6]	A	G	5.015e^-4	0.942	UTR_3_PRIME FK506-bp1 DOWNSTREAM mRpL9	TF binding site mE1_TFBS_sens
3R	22251521	3R_22251521_SNP [dm3] 3R_26425799_SNP [dm6]	G	T	5.016e^-4	0.942	UPSTREAM CG6503 & 1 other INTRON CR31084
2R	10747912	2R_10747912_SNP [dm3] 2R_14860407_SNP [dm6]	A	G	5.030e^-4	0.942	SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10748008	2R_10748008_SNP [dm3] 2R_14860503_SNP [dm6]	A	G	5.030e^-4	0.942	SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23560308	3R_23560308_SNP [dm3] 3R_27734586_SNP [dm6]	C	T	5.031e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8647954	2L_8647954_SNP [dm3] 2L_8647954_SNP [dm6]	A	G	5.040e^-4	0.942	INTRON Sema-1a
3L	3820804	3L_3820804_SNP [dm3] 3L_3820804_SNP [dm6]	A	G	5.040e^-4	0.942	INTRON enc
3R	15794950	3R_15794950_SNP [dm3] 3R_19969228_SNP [dm6]	A	C	5.059e^-4	0.942	INTRON Hs6st
2R	11686176	2R_11686176_SNP [dm3] 2R_15798671_SNP [dm6]	A	C	5.059e^-4	0.942	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27015040	3R_27015040_SNP [dm3] 3R_31189318_SNP [dm6]	C	A	5.063e^-4	0.942	INTRON mesh
3R	24082166	3R_24082166_SNP [dm3] 3R_28256444_SNP [dm6]	G	A	5.095e^-4	0.942	INTERGENIC
3R	10034383	3R_10034383_SNP [dm3] 3R_14208661_SNP [dm6]	T	C	5.103e^-4	0.942	INTRON Dop1R1
3R	10034386	3R_10034386_SNP [dm3] 3R_14208664_SNP [dm6]	C	T	5.103e^-4	0.942	INTRON Dop1R1
X	16587296	X_16587296_DEL [dm3] X_16693263_DEL [dm6]	ATACATAC	A	5.107e^-4	0.942	INTRON Sep4
2L	20503081	2L_20503081_SNP [dm3] 2L_20503081_SNP [dm6]	G	T	5.110e^-4	0.942	INTERGENIC
2L	10384655	2L_10384655_SNP [dm3] 2L_10384655_SNP [dm6]	T	G	5.114e^-4	0.942	UTR_3_PRIME CG5096 DOWNSTREAM cdc2
2R	12132283	2R_12132283_SNP [dm3] 2R_16244778_SNP [dm6]	A	C	5.121e^-4	0.942	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15267585	3L_15267585_DEL [dm3] 3L_15274485_DEL [dm6]	CGATT	C	5.122e^-4	0.942	INTERGENIC
2R	10091601	2R_10091601_MNP [dm3] 2R_14204096_MNP [dm6]	AGA	TCT	5.124e^-4	0.942	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	16759896	3L_16759896_SNP [dm3] 3L_16766796_SNP [dm6]	C	A	5.146e^-4	0.942	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9251694	3L_9251694_SNP [dm3] 3L_9258594_SNP [dm6]	T	G	5.149e^-4	0.942	INTRON GluRIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21911894	3R_21911894_SNP [dm3] 3R_26086172_SNP [dm6]	A	G	5.150e^-4	0.942	INTRON dys	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12884143	3L_12884143_SNP [dm3] 3L_12891043_SNP [dm6]	A	T	5.151e^-4	0.942	NON_SYNONYMOUS_CODING CG43894 INTRON CG43894
3R	19460224	3R_19460224_DEL [dm3] 3R_23634502_DEL [dm6]	AATTTGTA	A	5.159e^-4	0.942	INTRON CG31145
3R	19460233	3R_19460233_SNP [dm3] 3R_23634511_SNP [dm6]	T	C	5.159e^-4	0.942	INTRON CG31145
3R	19460242	3R_19460242_SNP [dm3] 3R_23634520_SNP [dm6]	T	G	5.159e^-4	0.942	INTRON CG31145
3R	14221539	3R_14221539_SNP [dm3] 3R_18395817_SNP [dm6]	C	G	5.160e^-4	0.942	INTRON Vha100-2
2L	8445850	2L_8445850_SNP [dm3] 2L_8445850_SNP [dm6]	A	T	5.161e^-4	0.942	DOWNSTREAM U26 & 1 other INTERGENIC
3L	6320367	3L_6320367_SNP [dm3] 3L_6327267_SNP [dm6]	G	A	5.167e^-4	0.942	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320378	3L_6320378_SNP [dm3] 3L_6327278_SNP [dm6]	C	A	5.167e^-4	0.942	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
2L	11097766	2L_11097766_SNP [dm3] 2L_11097766_SNP [dm6]	T	G	5.172e^-4	0.942	SYNONYMOUS_CODING Ge-1	TF binding site mE1_TFBS_cad
X	16876145	X_16876145_SNP [dm3] X_16982112_SNP [dm6]	T	C	5.176e^-4	0.942	INTRON CG45002
3R	26571216	3R_26571216_SNP [dm3] 3R_30745494_SNP [dm6]	T	G	5.176e^-4	0.942	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8329020	2R_8329020_SNP [dm3] 2R_12441515_SNP [dm6]	G	T	5.185e^-4	0.942	UPSTREAM CG30334 INTRON Dyb
3R	5463414	3R_5463414_INS [dm3] 3R_9637692_INS [dm6]	T	TCGAATCGAATGATAATGTG...	5.202e^-4	0.942	UPSTREAM Dh44 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	7814708	2L_7814708_SNP [dm3] 2L_7814708_SNP [dm6]	C	T	5.247e^-4	0.942	INTRON LanB1
2R	11227775	2R_11227775_SNP [dm3] 2R_15340270_SNP [dm6]	C	T	5.257e^-4	0.942	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
X	11694464	X_11694464_SNP [dm3] X_11800431_SNP [dm6]	C	T	5.259e^-4	0.942	UTR_3_PRIME CkIIbeta	TF binding site BDTNP1_TFBS_dl
3L	4735284	3L_4735284_SNP [dm3] 3L_4735284_SNP [dm6]	T	A	5.264e^-4	0.942	INTRON RhoGEF64C
3L	4735294	3L_4735294_SNP [dm3] 3L_4735294_SNP [dm6]	T	C	5.264e^-4	0.942	INTRON RhoGEF64C
3L	22874765	3L_22874765_SNP [dm3] 3L_22881665_SNP [dm6]	G	A	5.264e^-4	0.942	DOWNSTREAM Ssl1 INTRON slif	TF binding site BDTNP1_TFBS_twi
2R	6784571	2R_6784571_SNP [dm3] 2R_10897066_SNP [dm6]	T	A	5.264e^-4	0.942	UTR_3_PRIME CG12942 DOWNSTREAM CG7712 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23602513	3L_23602513_SNP [dm3] 3L_23609413_SNP [dm6]	G	C	5.265e^-4	0.942	INTRON AGO3	transposable element FlyBase
X	2871538	X_2871538_SNP [dm3] X_2977505_SNP [dm6]	G	A	5.268e^-4	0.942	INTRON kirre
2L	9139436	2L_9139436_SNP [dm3] 2L_9139436_SNP [dm6]	C	T	5.270e^-4	0.942	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	10713293	3R_10713293_SNP [dm3] 3R_14887571_SNP [dm6]	G	C	5.271e^-4	0.942	SYNONYMOUS_CODING CG33331 INTRON CG33332	TF binding site mE1_TFBS_inv
3L	11832992	3L_11832992_SNP [dm3] 3L_11839892_SNP [dm6]	T	C	5.279e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25389653	3R_25389653_SNP [dm3] 3R_29563931_SNP [dm6]	A	G	5.297e^-4	0.942	INTRON Dr	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13669614	3R_13669614_SNP [dm3] 3R_17843892_SNP [dm6]	C	G	5.299e^-4	0.942	INTRON tinc
3L	10538832	3L_10538832_SNP [dm3] 3L_10545732_SNP [dm6]	T	A	5.304e^-4	0.942	INTRON A2bp1
3R	3971264	3R_3971264_DEL [dm3] 3R_8145542_DEL [dm6]	CTTTTTTATTGTGC...	C	5.305e^-4	0.942	INTERGENIC
2L	8401649	2L_8401649_SNP [dm3] 2L_8401649_SNP [dm6]	A	G	5.306e^-4	0.942	UTR_3_PRIME fy DOWNSTREAM CG31898
X	21046305	X_21046305_SNP [dm3] X_21175278_SNP [dm6]	C	A	5.310e^-4	0.942	INTERGENIC
2R	10634114	2R_10634114_SNP [dm3] 2R_14746609_SNP [dm6]	T	A	5.312e^-4	0.942	UTR_3_PRIME Dro UPSTREAM AttA DOWNSTREAM Dro
2L	16790004	2L_16790004_SNP [dm3] 2L_16790004_SNP [dm6]	C	A	5.313e^-4	0.942	INTRON Cyt-b5-r
3R	15347978	3R_15347978_SNP [dm3] 3R_19522256_SNP [dm6]	G	A	5.315e^-4	0.942	INTRON Dys
2R	10091586	2R_10091586_INS [dm3] 2R_14204081_INS [dm6]	G	GA	5.315e^-4	0.942	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11745518	2L_11745518_DEL [dm3] 2L_11745518_DEL [dm6]	AA	T	5.316e^-4	0.942	DOWNSTREAM Vha100-5 INTERGENIC
3R	18750467	3R_18750467_SNP [dm3] 3R_22924745_SNP [dm6]	G	C	5.319e^-4	0.942	DOWNSTREAM CG6660 INTRON klg
3L	18067459	3L_18067459_SNP [dm3] 3L_18074359_SNP [dm6]	T	G	5.321e^-4	0.942	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
2L	19364100	2L_19364100_INS [dm3] 2L_19364100_INS [dm6]	A	ACATTGAGATCTT...	5.323e^-4	0.942	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16592135	2L_16592135_SNP [dm3] 2L_16592135_SNP [dm6]	A	C	5.329e^-4	0.942	INTRON CG42389	TF binding site mE1_TFBS_cad
3R	11375619	3R_11375619_SNP [dm3] 3R_15549897_SNP [dm6]	G	A	5.339e^-4	0.942	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
X	20968038	X_20968038_SNP [dm3] X_21097011_SNP [dm6]	A	G	5.353e^-4	0.942	INTRON stg1 & 2 others
X	17128524	X_17128524_SNP [dm3] X_17234491_SNP [dm6]	T	A	5.360e^-4	0.942	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20897368	X_20897368_INS [dm3] X_21026341_INS [dm6]	A	AG	5.366e^-4	0.942	UTR_3_PRIME CG1532 UPSTREAM r-cup
2L	19436443	2L_19436443_SNP [dm3] 2L_19436443_SNP [dm6]	A	C	5.398e^-4	0.942	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
3L	8696168	3L_8696168_SNP [dm3] 3L_8703068_SNP [dm6]	C	A	5.400e^-4	0.942	INTERGENIC
2L	8444458	2L_8444458_SNP [dm3] 2L_8444458_SNP [dm6]	G	A	5.402e^-4	0.942	NON_SYNONYMOUS_CODING CG31897
3R	11157612	3R_11157612_SNP [dm3] 3R_15331890_SNP [dm6]	A	G	5.408e^-4	0.942	SYNONYMOUS_CODING FK506-bp1 DOWNSTREAM mRpL9
3L	18026570	3L_18026570_SNP [dm3] 3L_18033470_SNP [dm6]	G	C	5.417e^-4	0.942	INTRON Eip75B
3R	10042451	3R_10042451_SNP [dm3] 3R_14216729_SNP [dm6]	C	G	5.418e^-4	0.942	INTRON CG9649
X	9096334	X_9096334_SNP [dm3] X_9202301_SNP [dm6]	C	A	5.426e^-4	0.942	UPSTREAM su_r_ INTERGENIC
2L	6537121	2L_6537121_SNP [dm3] 2L_6537121_SNP [dm6]	A	C	5.438e^-4	0.942	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6217635	2R_6217635_SNP [dm3] 2R_10330130_SNP [dm6]	G	A	5.444e^-4	0.942	INTRON CG42732	TF binding site mE1_TFBS_cad
2R	13329140	2R_13329140_SNP [dm3] 2R_17441635_SNP [dm6]	G	T	5.447e^-4	0.942	INTRON EDTP & 1 other
2R	13329147	2R_13329147_SNP [dm3] 2R_17441642_SNP [dm6]	C	T	5.447e^-4	0.942	INTRON EDTP & 1 other
2R	13329182	2R_13329182_SNP [dm3] 2R_17441677_SNP [dm6]	A	C	5.447e^-4	0.942	SYNONYMOUS_CODING CG18467 INTRON EDTP
X	21435446	X_21435446_SNP [dm3] X_21564419_SNP [dm6]	C	T	5.452e^-4	0.942	INTERGENIC
3R	23412047	3R_23412047_SNP [dm3] 3R_27586325_SNP [dm6]	C	T	5.460e^-4	0.942	UTR_3_PRIME raps DOWNSTREAM CG5639
3L	15335722	3L_15335722_SNP [dm3] 3L_15342622_SNP [dm6]	A	G	5.461e^-4	0.942	UTR_3_PRIME Toll-6 DOWNSTREAM Toll-6
3R	9639511	3R_9639511_SNP [dm3] 3R_13813789_SNP [dm6]	T	C	5.461e^-4	0.942	UTR_5_PRIME tal-AA UTR_3_PRIME tal-1A & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13926727	3L_13926727_SNP [dm3] 3L_13933627_SNP [dm6]	C	T	5.471e^-4	0.942	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	5004798	X_5004798_SNP [dm3] X_5110765_SNP [dm6]	C	A	5.482e^-4	0.942	INTRON rg & 1 other
3R	23926840	3R_23926840_SNP [dm3] 3R_28101118_SNP [dm6]	T	C	5.509e^-4	0.942	INTERGENIC
3R	9913721	3R_9913721_SNP [dm3] 3R_14087999_SNP [dm6]	A	C	5.512e^-4	0.942	DOWNSTREAM foxo INTERGENIC
3L	8032936	3L_8032936_SNP [dm3] 3L_8039836_SNP [dm6]	T	G	5.521e^-4	0.942	INTRON nmo
3L	8032941	3L_8032941_SNP [dm3] 3L_8039841_SNP [dm6]	T	C	5.521e^-4	0.942	INTRON nmo
2L	9114018	2L_9114018_SNP [dm3] 2L_9114018_SNP [dm6]	C	A	5.523e^-4	0.942	DOWNSTREAM Or30a INTERGENIC
X	8986617	X_8986617_SNP [dm3] X_9092584_SNP [dm6]	C	A	5.530e^-4	0.942	UTR_3_PRIME CG7033
3R	11077337	3R_11077337_SNP [dm3] 3R_15251615_SNP [dm6]	A	G	5.532e^-4	0.942	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20421926	X_20421926_SNP [dm3] X_20550899_SNP [dm6]	A	G	5.533e^-4	0.942	INTRON RunxB
2L	5824612	2L_5824612_SNP [dm3] 2L_5824612_SNP [dm6]	A	C	5.536e^-4	0.942	UTR_5_PRIME TrissinR UPSTREAM TrissinR
3R	16237457	3R_16237457_SNP [dm3] 3R_20411735_SNP [dm6]	A	T	5.538e^-4	0.942	INTRON Gfrl
X	12511263	X_12511263_SNP [dm3] X_12617230_SNP [dm6]	G	A	5.544e^-4	0.942	INTRON CG11085	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12407958	2R_12407958_SNP [dm3] 2R_16520453_SNP [dm6]	A	G	5.561e^-4	0.942	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18022447	3L_18022447_SNP [dm3] 3L_18029347_SNP [dm6]	T	A	5.587e^-4	0.942	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	5.590e^-4	0.942	INTERGENIC
3R	18099723	3R_18099723_SNP [dm3] 3R_22274001_SNP [dm6]	T	G	5.593e^-4	0.942	INTRON SKIP
X	12642769	X_12642769_SNP [dm3] X_12748736_SNP [dm6]	A	T	5.601e^-4	0.942	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3R	16242752	3R_16242752_SNP [dm3] 3R_20417030_SNP [dm6]	G	A	5.617e^-4	0.942	INTRON Gfrl
2R	9579894	2R_9579894_SNP [dm3] 2R_13692389_SNP [dm6]	C	A	5.624e^-4	0.942	INTRON fas & 1 other
2L	4090164	2L_4090164_SNP [dm3] 2L_4090164_SNP [dm6]	C	G	5.638e^-4	0.942	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17659365	3R_17659365_SNP [dm3] 3R_21833643_SNP [dm6]	G	A	5.638e^-4	0.942	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
3R	24390576	3R_24390576_SNP [dm3] 3R_28564854_SNP [dm6]	T	C	5.645e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12349065	2R_12349065_SNP [dm3] 2R_16461560_SNP [dm6]	G	T	5.658e^-4	0.942	INTERGENIC
2R	12349463	2R_12349463_SNP [dm3] 2R_16461958_SNP [dm6]	C	T	5.658e^-4	0.942	INTERGENIC
3R	5441563	3R_5441563_SNP [dm3] 3R_9615841_SNP [dm6]	G	A	5.663e^-4	0.942	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1723107	3L_1723107_SNP [dm3] 3L_1723107_SNP [dm6]	G	T	5.668e^-4	0.942	UTR_5_PRIME CG18171 INTRON drpr
3R	22721243	3R_22721243_SNP [dm3] 3R_26895521_SNP [dm6]	T	A	5.673e^-4	0.942	INTRON T48	regulatory region REDfly_CRMs
3R	21891668	3R_21891668_SNP [dm3] 3R_26065946_SNP [dm6]	A	C	5.673e^-4	0.942	INTERGENIC
3R	21891264	3R_21891264_SNP [dm3] 3R_26065542_SNP [dm6]	C	T	5.692e^-4	0.942	INTERGENIC
3L	11812350	3L_11812350_SNP [dm3] 3L_11819250_SNP [dm6]	T	C	5.695e^-4	0.942	INTRON CG5946	TF binding site mE1_TFBS_Trl
3L	11138130	3L_11138130_SNP [dm3] 3L_11145030_SNP [dm6]	T	G	5.698e^-4	0.942	INTRON CG32082
3L	8829765	3L_8829765_SNP [dm3] 3L_8836665_SNP [dm6]	A	G	5.700e^-4	0.942	NON_SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
3R	11405546	3R_11405546_SNP [dm3] 3R_15579824_SNP [dm6]	C	T	5.705e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1282766	2L_1282766_SNP [dm3] 2L_1282766_SNP [dm6]	G	A	5.706e^-4	0.942	INTRON robo3
3R	7537869	3R_7537869_SNP [dm3] 3R_11712147_SNP [dm6]	C	T	5.725e^-4	0.942	SYNONYMOUS_CODING CG14720	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9825245	3R_9825245_SNP [dm3] 3R_13999523_SNP [dm6]	C	G	5.739e^-4	0.942	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11017873	2L_11017873_SNP [dm3] 2L_11017873_SNP [dm6]	T	C	5.743e^-4	0.942	SYNONYMOUS_CODING CG14913 INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13970295	3R_13970295_SNP [dm3] 3R_18144573_SNP [dm6]	T	A	5.745e^-4	0.942	INTERGENIC
3R	7854949	3R_7854949_SNP [dm3] 3R_12029227_SNP [dm6]	T	G	5.759e^-4	0.942	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358 INTRON CG31358
X	11865059	X_11865059_SNP [dm3] X_11971026_SNP [dm6]	A	C	5.760e^-4	0.942	INTRON cac	TF binding site mE1_TFBS_sens
3R	18115247	3R_18115247_SNP [dm3] 3R_22289525_SNP [dm6]	T	C	5.769e^-4	0.942	SYNONYMOUS_CODING SKIP
3R	6394600	3R_6394600_SNP [dm3] 3R_10568878_SNP [dm6]	T	C	5.772e^-4	0.942	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	6390427	3L_6390427_SNP [dm3] 3L_6397327_SNP [dm6]	C	G	5.774e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18377384	X_18377384_SNP [dm3] X_18483351_SNP [dm6]	A	T	5.775e^-4	0.942	INTRON Hayan	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16558265	3L_16558265_SNP [dm3] 3L_16565165_SNP [dm6]	G	A	5.775e^-4	0.942	SYNONYMOUS_CODING Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15555804	2R_15555804_DEL [dm3] 2R_19668299_DEL [dm6]	ATTTTAAA	A	5.778e^-4	0.942	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15555819	2R_15555819_SNP [dm3] 2R_19668314_SNP [dm6]	T	A	5.778e^-4	0.942	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15555950	2R_15555950_SNP [dm3] 2R_19668445_SNP [dm6]	T	G	5.778e^-4	0.942	UTR_5_PRIME hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15556469	2R_15556469_SNP [dm3] 2R_19668964_SNP [dm6]	C	T	5.778e^-4	0.942	UTR_5_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15556822	2R_15556822_SNP [dm3] 2R_19669317_SNP [dm6]	G	A	5.778e^-4	0.942	UTR_5_PRIME hrg UPSTREAM hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15557319	2R_15557319_SNP [dm3] 2R_19669814_SNP [dm6]	G	A	5.778e^-4	0.942	UTR_5_PRIME hrg UPSTREAM hrg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	8100048	X_8100048_SNP [dm3] X_8206015_SNP [dm6]	T	C	5.794e^-4	0.942	INTRON sdt
3L	16547975	3L_16547975_SNP [dm3] 3L_16554875_SNP [dm6]	A	G	5.803e^-4	0.942	INTERGENIC
2R	8584062	2R_8584062_SNP [dm3] 2R_12696557_SNP [dm6]	T	A	5.808e^-4	0.942	INTERGENIC
X	10851244	X_10851244_SNP [dm3] X_10957211_SNP [dm6]	T	C	5.813e^-4	0.942	INTRON Myo10A
3L	11812367	3L_11812367_SNP [dm3] 3L_11819267_SNP [dm6]	T	G	5.816e^-4	0.942	INTRON CG5946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10919629	3R_10919629_SNP [dm3] 3R_15093907_SNP [dm6]	A	T	5.822e^-4	0.942	INTRON CG6966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_Trl
3R	10919922	3R_10919922_SNP [dm3] 3R_15094200_SNP [dm6]	T	C	5.822e^-4	0.942	INTRON CG6966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10920032	3R_10920032_SNP [dm3] 3R_15094310_SNP [dm6]	T	C	5.822e^-4	0.942	INTRON CG6966	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10921343	3R_10921343_SNP [dm3] 3R_15095621_SNP [dm6]	A	T	5.822e^-4	0.942	UTR_5_PRIME CG6966 DOWNSTREAM CG42788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	10923248	3R_10923248_DEL [dm3] 3R_15097526_DEL [dm6]	GTCG	G	5.822e^-4	0.942	UTR_3_PRIME CG42788
3R	10927489	3R_10927489_SNP [dm3] 3R_15101767_SNP [dm6]	C	A	5.822e^-4	0.942	SYNONYMOUS_CODING CG42788
3R	10927525	3R_10927525_SNP [dm3] 3R_15101803_SNP [dm6]	C	T	5.822e^-4	0.942	SYNONYMOUS_CODING CG42788
3R	10927991	3R_10927991_SNP [dm3] 3R_15102269_SNP [dm6]	T	C	5.822e^-4	0.942	INTRON CG42788
3R	10927996	3R_10927996_SNP [dm3] 3R_15102274_SNP [dm6]	A	T	5.822e^-4	0.942	INTRON CG42788
X	17128528	X_17128528_SNP [dm3] X_17234495_SNP [dm6]	C	A	5.825e^-4	0.942	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11970977	2R_11970977_SNP [dm3] 2R_16083472_SNP [dm6]	G	C	5.833e^-4	0.942	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
2L	3665496	2L_3665496_SNP [dm3] 2L_3665496_SNP [dm6]	T	A	5.843e^-4	0.942	INTRON CG34340
2L	3387598	2L_3387598_SNP [dm3] 2L_3387598_SNP [dm6]	A	T	5.846e^-4	0.942	UPSTREAM CR45301 DOWNSTREAM CG42460 INTRON Sfp23F
2R	17912896	2R_17912896_SNP [dm3] 2R_22025391_SNP [dm6]	C	T	5.848e^-4	0.942	INTRON CG34370
2R	17912936	2R_17912936_SNP [dm3] 2R_22025431_SNP [dm6]	A	G	5.848e^-4	0.942	INTRON CG34370
2R	17912937	2R_17912937_SNP [dm3] 2R_22025432_SNP [dm6]	G	T	5.848e^-4	0.942	INTRON CG34370
3L	12065235	3L_12065235_SNP [dm3] 3L_12072135_SNP [dm6]	G	C	5.853e^-4	0.942	INTRON Sema-5c
3R	12504797	3R_12504797_SNP [dm3] 3R_16679075_SNP [dm6]	A	G	5.863e^-4	0.942	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13443377	2L_13443377_SNP [dm3] 2L_13443377_SNP [dm6]	T	C	5.877e^-4	0.942	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad
3L	8864033	3L_8864033_INS [dm3] 3L_8870933_INS [dm6]	T	TGTGTGT	5.880e^-4	0.942	INTRON dally	TF binding site BDTNP1_TFBS_da
2R	5517602	2R_5517602_SNP [dm3] 2R_9630097_SNP [dm6]	G	A	5.886e^-4	0.942	INTRON Mmp2
X	21899576	X_21899576_SNP [dm3] X_22497740_SNP [dm6]	C	T	5.897e^-4	0.942	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_sens
3L	8640098	3L_8640098_SNP [dm3] 3L_8646998_SNP [dm6]	G	A	5.907e^-4	0.942	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23207171	3L_23207171_SNP [dm3] 3L_23214071_SNP [dm6]	G	A	5.919e^-4	0.942	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb transposable element FlyBase
3L	519496	3L_519496_SNP [dm3] 3L_519496_SNP [dm6]	G	T	5.932e^-4	0.942	INTRON klar
3L	11749637	3L_11749637_SNP [dm3] 3L_11756537_SNP [dm6]	C	A	5.933e^-4	0.942	INTRON CG6024
3L	4576693	3L_4576693_SNP [dm3] 3L_4576693_SNP [dm6]	G	A	5.954e^-4	0.942	INTRON CG42540
3L	15453379	3L_15453379_SNP [dm3] 3L_15460279_SNP [dm6]	G	T	5.963e^-4	0.942	INTERGENIC
2R	72527	2R_72527_SNP [dm3] 2R_4185022_SNP [dm6]	G	C	5.966e^-4	0.942	INTERGENIC
2R	88447	2R_88447_SNP [dm3] 2R_4200942_SNP [dm6]	A	G	5.966e^-4	0.942	INTERGENIC
3R	11402862	3R_11402862_SNP [dm3] 3R_15577140_SNP [dm6]	G	C	5.980e^-4	0.942	INTERGENIC
2L	670480	2L_670480_SNP [dm3] 2L_670480_SNP [dm6]	G	A	5.981e^-4	0.942	INTRON ds
3R	9961476	3R_9961476_SNP [dm3] 3R_14135754_SNP [dm6]	T	G	5.982e^-4	0.942	INTERGENIC
3R	9961477	3R_9961477_SNP [dm3] 3R_14135755_SNP [dm6]	C	A	5.982e^-4	0.942	INTERGENIC
3L	9261758	3L_9261758_INS [dm3] 3L_9268658_INS [dm6]	T	TT	5.994e^-4	0.942	INTRON GluRIB
3L	7875783	3L_7875783_SNP [dm3] 3L_7882683_SNP [dm6]	T	C	5.997e^-4	0.942	INTRON CG32365
2R	19576642	2R_19576642_SNP [dm3] 2R_23689119_SNP [dm6]	C	T	6.000e^-4	0.942	SYNONYMOUS_CODING Pal2
3L	18901640	3L_18901640_SNP [dm3] 3L_18908540_SNP [dm6]	G	C	6.005e^-4	0.942	UTR_3_PRIME Ir75d & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10118452	2L_10118452_SNP [dm3] 2L_10118452_SNP [dm6]	G	T	6.012e^-4	0.942	INTRON CG44153 & 1 other	transposable element FlyBase
3R	11469770	3R_11469770_SNP [dm3] 3R_15644048_SNP [dm6]	C	T	6.017e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15728220	2L_15728220_SNP [dm3] 2L_15728220_SNP [dm6]	G	A	6.029e^-4	0.942	UTR_3_PRIME CycE
3R	23422696	3R_23422696_SNP [dm3] 3R_27596974_SNP [dm6]	G	A	6.038e^-4	0.942	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2R	20978351	2R_20978351_DEL [dm3] 2R_25090828_DEL [dm6]	TT	T	6.048e^-4	0.942	INTRON lov	transposable element FlyBase
3L	6061138	3L_6061138_SNP [dm3] 3L_6068038_SNP [dm6]	T	C	6.057e^-4	0.942	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19162830	3R_19162830_SNP [dm3] 3R_23337108_SNP [dm6]	C	G	6.071e^-4	0.942	INTRON pnt	TF binding site mE1_TFBS_inv
3R	18640941	3R_18640941_SNP [dm3] 3R_22815219_SNP [dm6]	T	A	6.077e^-4	0.942	NON_SYNONYMOUS_CODING CG13840	TF binding site mE1_TFBS_chinmo
2L	19392684	2L_19392684_SNP [dm3] 2L_19392684_SNP [dm6]	G	A	6.082e^-4	0.942	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
2L	17641083	2L_17641083_SNP [dm3] 2L_17641083_SNP [dm6]	T	C	6.083e^-4	0.942	INTERGENIC
X	5083218	X_5083218_SNP [dm3] X_5189185_SNP [dm6]	A	G	6.086e^-4	0.942	UPSTREAM CR44834 INTRON rg & 1 other
2L	15336490	2L_15336490_SNP [dm3] 2L_15336490_SNP [dm6]	T	A	6.087e^-4	0.942	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14598468	2R_14598468_SNP [dm3] 2R_18710963_SNP [dm6]	C	T	6.087e^-4	0.942	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6061133	3L_6061133_SNP [dm3] 3L_6068033_SNP [dm6]	A	G	6.091e^-4	0.942	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12425006	2R_12425006_SNP [dm3] 2R_16537501_SNP [dm6]	C	T	6.097e^-4	0.942	DOWNSTREAM loopin-1 INTERGENIC
3L	2105320	3L_2105320_SNP [dm3] 3L_2105320_SNP [dm6]	T	C	6.100e^-4	0.942	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	20107022	2R_20107022_SNP [dm3] 2R_24219499_SNP [dm6]	G	A	6.104e^-4	0.942	INTRON CG30419
X	20462137	X_20462137_SNP [dm3] X_20591110_SNP [dm6]	A	T	6.107e^-4	0.942	UTR_3_PRIME RunxA
3L	11749586	3L_11749586_SNP [dm3] 3L_11756486_SNP [dm6]	T	C	6.111e^-4	0.942	INTRON CG6024
2L	8475569	2L_8475569_DEL [dm3] 2L_8475569_DEL [dm6]	TT	T	6.115e^-4	0.942	INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21897001	3R_21897001_SNP [dm3] 3R_26071279_SNP [dm6]	T	A	6.120e^-4	0.942	INTRON CR44950
3R	21897008	3R_21897008_SNP [dm3] 3R_26071286_SNP [dm6]	G	A	6.120e^-4	0.942	INTRON CR44950
3R	21897013	3R_21897013_SNP [dm3] 3R_26071291_SNP [dm6]	A	T	6.120e^-4	0.942	INTRON CR44950
2L	3382917	2L_3382917_SNP [dm3] 2L_3382917_SNP [dm6]	A	C	6.123e^-4	0.942	INTERGENIC
2L	7278808	2L_7278808_SNP [dm3] 2L_7278808_SNP [dm6]	G	A	6.125e^-4	0.942	INTERGENIC
3L	23588391	3L_23588391_SNP [dm3] 3L_23595291_SNP [dm6]	C	T	6.127e^-4	0.942	INTRON AGO3	transposable element FlyBase
3R	3106092	3R_3106092_SNP [dm3] 3R_7280370_SNP [dm6]	G	C	6.133e^-4	0.942	INTRON rn
3L	3979937	3L_3979937_SNP [dm3] 3L_3979937_SNP [dm6]	G	A	6.156e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

Ave_Time_Grooming phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results