DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.537e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1667 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19199293	3R_19199293_SNP [dm3] 3R_23373571_SNP [dm6]	T	A	8.773e^-7	0.928	UTR_3_PRIME CG42827 UPSTREAM CR44322 & 1 other
2R	18303029	2R_18303029_SNP [dm3] 2R_22415524_SNP [dm6]	A	G	3.051e^-6	0.928	UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	18303096	2R_18303096_SNP [dm3] 2R_22415591_SNP [dm6]	T	C	3.051e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	18303144	2R_18303144_SNP [dm3] 2R_22415639_SNP [dm6]	G	A	3.051e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	18303145	2R_18303145_SNP [dm3] 2R_22415640_SNP [dm6]	A	G	3.051e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	16732892	2L_16732892_SNP [dm3] 2L_16732892_SNP [dm6]	T	C	4.299e^-6	0.928	SYNONYMOUS_CODING CG17904 UPSTREAM Prosbeta4 DOWNSTREAM glu	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18303097	2R_18303097_SNP [dm3] 2R_22415592_SNP [dm6]	A	C	4.956e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	18896940	3R_18896940_SNP [dm3] 3R_23071218_SNP [dm6]	A	G	5.758e^-6	0.928	UTR_3_PRIME CG13830
2R	18303124	2R_18303124_SNP [dm3] 2R_22415619_SNP [dm6]	A	T	5.905e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	18303119	2R_18303119_SNP [dm3] 2R_22415614_SNP [dm6]	T	G	7.694e^-6	0.928	START_GAINED qkr58E-2 UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	2767391	X_2767391_INS [dm3] X_2873358_INS [dm6]	T	TGT	7.841e^-6	0.928	UPSTREAM CG14416 INTRON kirre
2R	18303111	2R_18303111_SNP [dm3] 2R_22415606_SNP [dm6]	T	A	8.121e^-6	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	17250749	3R_17250749_SNP [dm3] 3R_21425027_SNP [dm6]	G	A	1.025e^-5	0.928	INTRON lbl
2R	5948073	2R_5948073_SNP [dm3] 2R_10060568_SNP [dm6]	G	A	1.134e^-5	0.928	INTRON magu
3R	18897127	3R_18897127_SNP [dm3] 3R_23071405_SNP [dm6]	A	T	1.200e^-5	0.928	UTR_3_PRIME CG13830
X	19887739	X_19887739_SNP [dm3] X_19993706_SNP [dm6]	G	A	1.224e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3705829	2L_3705829_SNP [dm3] 2L_3705829_SNP [dm6]	T	C	1.279e^-5	0.928	UPSTREAM CG31778 DOWNSTREAM CG31777 INTERGENIC
2R	18303120	2R_18303120_SNP [dm3] 2R_22415615_SNP [dm6]	T	C	1.283e^-5	0.928	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	17250775	3R_17250775_SNP [dm3] 3R_21425053_SNP [dm6]	G	T	1.355e^-5	0.928	INTRON lbl
2R	13654982	2R_13654982_SNP [dm3] 2R_17767477_SNP [dm6]	A	G	1.422e^-5	0.928	SYNONYMOUS_CODING CG14488 UPSTREAM OstDelta DOWNSTREAM CG18635 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19079635	3R_19079635_SNP [dm3] 3R_23253913_SNP [dm6]	G	A	1.443e^-5	0.928	SYNONYMOUS_CODING EloA
3R	26899757	3R_26899757_SNP [dm3] 3R_31074035_SNP [dm6]	T	C	1.462e^-5	0.928	INTRON Sox100B
3L	11793492	3L_11793492_SNP [dm3] 3L_11800392_SNP [dm6]	C	T	1.465e^-5	0.928	INTRON CG10361
3R	17250744	3R_17250744_SNP [dm3] 3R_21425022_SNP [dm6]	C	G	1.513e^-5	0.928	INTRON lbl
3R	19199252	3R_19199252_SNP [dm3] 3R_23373530_SNP [dm6]	G	A	1.564e^-5	0.928	SYNONYMOUS_CODING CG42827 UPSTREAM CR44322 & 1 other
X	19887748	X_19887748_SNP [dm3] X_19993715_SNP [dm6]	A	G	1.632e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8128628	X_8128628_SNP [dm3] X_8234595_SNP [dm6]	A	G	1.679e^-5	0.928	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	3182168	X_3182168_SNP [dm3] X_3288135_SNP [dm6]	G	A	1.794e^-5	0.928	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	9796499	2R_9796499_SNP [dm3] 2R_13908994_SNP [dm6]	T	C	1.808e^-5	0.928	INTRON shot
3L	5088602	3L_5088602_SNP [dm3] 3L_5088602_SNP [dm6]	C	T	1.818e^-5	0.928	INTERGENIC
2L	16733018	2L_16733018_SNP [dm3] 2L_16733018_SNP [dm6]	T	C	1.856e^-5	0.928	SYNONYMOUS_CODING CG17904 UPSTREAM Prosbeta4 DOWNSTREAM glu	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	12088951	2L_12088951_SNP [dm3] 2L_12088951_SNP [dm6]	C	T	1.915e^-5	0.928	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6537121	2L_6537121_SNP [dm3] 2L_6537121_SNP [dm6]	A	C	1.919e^-5	0.928	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8128602	X_8128602_SNP [dm3] X_8234569_SNP [dm6]	G	A	1.988e^-5	0.928	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7531445	2L_7531445_SNP [dm3] 2L_7531445_SNP [dm6]	C	T	2.202e^-5	0.928	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2L	16737399	2L_16737399_SNP [dm3] 2L_16737399_SNP [dm6]	G	A	2.436e^-5	0.928	SYNONYMOUS_CODING glu	TF binding site mE1_TFBS_sens
3R	19618696	3R_19618696_SNP [dm3] 3R_23792974_SNP [dm6]	T	G	2.512e^-5	0.928	SYNONYMOUS_CODING mbc
3R	11658347	3R_11658347_SNP [dm3] 3R_15832625_SNP [dm6]	G	C	2.572e^-5	0.928	UTR_5_PRIME rec DOWNSTREAM CG43318 & 1 other	TF binding site mE1_TFBS_inv
X	12817788	X_12817788_SNP [dm3] X_12923755_SNP [dm6]	T	C	2.710e^-5	0.928	INTRON fne
2L	12088911	2L_12088911_SNP [dm3] 2L_12088911_SNP [dm6]	T	C	2.799e^-5	0.928	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18896443	3R_18896443_DEL [dm3] 3R_23070721_DEL [dm6]	ATAATATTTGTGAGTGGA...	A	2.898e^-5	0.928	UTR_3_PRIME CG13830
3R	17578210	3R_17578210_SNP [dm3] 3R_21752488_SNP [dm6]	C	A	2.999e^-5	0.928	NON_SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9223130	3R_9223130_SNP [dm3] 3R_13397408_SNP [dm6]	G	A	3.169e^-5	0.928	UPSTREAM CG14377 & 1 other INTERGENIC
X	12363825	X_12363825_SNP [dm3] X_12469792_SNP [dm6]	G	A	3.358e^-5	0.928	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8128612	X_8128612_DEL [dm3] X_8234579_DEL [dm6]	ACATATA	A	3.376e^-5	0.928	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	19125063	3R_19125063_SNP [dm3] 3R_23299341_SNP [dm6]	A	G	3.462e^-5	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18896905	3R_18896905_SNP [dm3] 3R_23071183_SNP [dm6]	T	C	3.611e^-5	0.928	UTR_3_PRIME CG13830
2L	16107585	2L_16107585_SNP [dm3] 2L_16107585_SNP [dm6]	C	T	3.641e^-5	0.928	INTERGENIC
2R	13792907	2R_13792907_INS [dm3] 2R_17905402_INS [dm6]	T	TCT	3.711e^-5	0.928	INTRON Elk
2L	10895153	2L_10895153_SNP [dm3] 2L_10895153_SNP [dm6]	C	G	3.746e^-5	0.928	EXON CR44491
X	19887736	X_19887736_SNP [dm3] X_19993703_SNP [dm6]	T	A	3.812e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9014927	2L_9014927_SNP [dm3] 2L_9014927_SNP [dm6]	G	T	3.847e^-5	0.928	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11733657	2L_11733657_INS [dm3] 2L_11733657_INS [dm6]	T	TCTTTCTCTTTTT...	3.859e^-5	0.928	INTERGENIC
X	8128629	X_8128629_SNP [dm3] X_8234596_SNP [dm6]	T	A	3.980e^-5	0.928	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6213760	2L_6213760_SNP [dm3] 2L_6213760_SNP [dm6]	C	T	4.060e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	14203440	2R_14203440_SNP [dm3] 2R_18315935_SNP [dm6]	G	C	4.178e^-5	0.928	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8552458	X_8552458_SNP [dm3] X_8658425_SNP [dm6]	A	G	4.294e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22683011	3R_22683011_SNP [dm3] 3R_26857289_SNP [dm6]	A	G	4.508e^-5	0.928	INTRON Lerp
3R	17841760	3R_17841760_SNP [dm3] 3R_22016038_SNP [dm6]	G	A	4.600e^-5	0.928	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
2L	16728703	2L_16728703_SNP [dm3] 2L_16728703_SNP [dm6]	T	C	4.606e^-5	0.928	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	16728723	2L_16728723_SNP [dm3] 2L_16728723_SNP [dm6]	T	C	4.606e^-5	0.928	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	16728725	2L_16728725_SNP [dm3] 2L_16728725_SNP [dm6]	G	A	4.606e^-5	0.928	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13792910	2R_13792910_DEL [dm3] 2R_17905405_DEL [dm6]	TAGTC	T	4.762e^-5	0.928	INTRON Elk
2L	12479501	2L_12479501_SNP [dm3] 2L_12479501_SNP [dm6]	A	C	5.005e^-5	0.928	INTRON bun	TF binding site BDTNP1_TFBS_twi
3L	18133400	3L_18133400_SNP [dm3] 3L_18140300_SNP [dm6]	T	C	5.037e^-5	0.928	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5423039	3L_5423039_SNP [dm3] 3L_5429939_SNP [dm6]	G	C	5.042e^-5	0.928	INTRON CG34391
3L	6488469	3L_6488469_SNP [dm3] 3L_6495369_SNP [dm6]	G	T	5.060e^-5	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	6536991	2L_6536991_SNP [dm3] 2L_6536991_SNP [dm6]	G	T	5.085e^-5	0.928	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6536995	2L_6536995_SNP [dm3] 2L_6536995_SNP [dm6]	T	C	5.085e^-5	0.928	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6538414	2L_6538414_DEL [dm3] 2L_6538414_DEL [dm6]	TGCCCCT	T	5.085e^-5	0.928	INTRON eya
X	8128601	X_8128601_SNP [dm3] X_8234568_SNP [dm6]	T	G	5.121e^-5	0.928	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	20613367	3R_20613367_DEL [dm3] 3R_24787645_DEL [dm6]	GAGTGAAGCATATGCACATC...	G	5.129e^-5	0.928	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15731338	2R_15731338_SNP [dm3] 2R_19843833_SNP [dm6]	G	A	5.148e^-5	0.928	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9188801	3R_9188801_INS [dm3] 3R_13363079_INS [dm6]	T	TT	5.155e^-5	0.928	INTRON poly
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	5.170e^-5	0.928	UPSTREAM tRNA:H:56E INTERGENIC
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	5.170e^-5	0.928	UPSTREAM tRNA:H:56E INTERGENIC
3L	18133394	3L_18133394_SNP [dm3] 3L_18140294_SNP [dm6]	C	T	5.201e^-5	0.928	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21395692	3R_21395692_SNP [dm3] 3R_25569970_SNP [dm6]	A	G	5.202e^-5	0.928	INTRON msi
2L	16732518	2L_16732518_SNP [dm3] 2L_16732518_SNP [dm6]	C	T	5.245e^-5	0.928	UPSTREAM CG17904 & 1 other INTERGENIC
2R	18302052	2R_18302052_SNP [dm3] 2R_22414547_SNP [dm6]	T	G	5.324e^-5	0.928	INTRON qkr58E-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18133346	3L_18133346_SNP [dm3] 3L_18140246_SNP [dm6]	T	A	5.390e^-5	0.928	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18133349	3L_18133349_SNP [dm3] 3L_18140249_SNP [dm6]	A	T	5.390e^-5	0.928	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18133351	3L_18133351_SNP [dm3] 3L_18140251_SNP [dm6]	A	G	5.390e^-5	0.928	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7729574	3R_7729574_SNP [dm3] 3R_11903852_SNP [dm6]	A	C	5.394e^-5	0.928	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17727517	2R_17727517_SNP [dm3] 2R_21840012_SNP [dm6]	C	T	5.484e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12479518	2L_12479518_SNP [dm3] 2L_12479518_SNP [dm6]	A	T	5.509e^-5	0.928	INTRON bun	TF binding site BDTNP1_TFBS_twi
2L	12479521	2L_12479521_SNP [dm3] 2L_12479521_SNP [dm6]	G	T	5.509e^-5	0.928	INTRON bun	TF binding site BDTNP1_TFBS_twi
2L	6536830	2L_6536830_SNP [dm3] 2L_6536830_SNP [dm6]	C	T	5.609e^-5	0.928	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9229371	3R_9229371_SNP [dm3] 3R_13403649_SNP [dm6]	G	A	5.696e^-5	0.928	SYNONYMOUS_CODING yellow-e3 UPSTREAM CG33977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2420815	2L_2420815_SNP [dm3] 2L_2420815_SNP [dm6]	G	C	5.781e^-5	0.928	UPSTREAM CG9886 & 1 other INTERGENIC
3R	18896968	3R_18896968_SNP [dm3] 3R_23071246_SNP [dm6]	G	T	5.844e^-5	0.928	UTR_3_PRIME CG13830
3L	14535452	3L_14535452_SNP [dm3] 3L_14542352_SNP [dm6]	C	T	5.959e^-5	0.928	SPLICE_SITE_REGION CG9238 INTRON CG9238
3L	6638760	3L_6638760_SNP [dm3] 3L_6645660_SNP [dm6]	C	T	5.985e^-5	0.928	INTERGENIC
2L	5967378	2L_5967378_SNP [dm3] 2L_5967378_SNP [dm6]	G	C	5.985e^-5	0.928	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8075345	2L_8075345_SNP [dm3] 2L_8075345_SNP [dm6]	A	G	6.066e^-5	0.928	SYNONYMOUS_CODING Mcr
3R	11658307	3R_11658307_SNP [dm3] 3R_15832585_SNP [dm6]	T	G	6.088e^-5	0.928	SYNONYMOUS_CODING rec DOWNSTREAM CG43318 & 1 other
3L	423723	3L_423723_SNP [dm3] 3L_423723_SNP [dm6]	T	C	6.139e^-5	0.928	INTERGENIC
2R	16099049	2R_16099049_SNP [dm3] 2R_20211544_SNP [dm6]	T	G	6.246e^-5	0.928	DOWNSTREAM CG16894 INTERGENIC
2R	5964983	2R_5964983_SNP [dm3] 2R_10077478_SNP [dm6]	G	A	6.260e^-5	0.928	UPSTREAM egr INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	5969416	2R_5969416_SNP [dm3] 2R_10081911_SNP [dm6]	T	C	6.260e^-5	0.928	UPSTREAM scaRNA:MeU1b-A234 INTRON egr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	9045329	3R_9045329_SNP [dm3] 3R_13219607_SNP [dm6]	C	G	6.266e^-5	0.928	DOWNSTREAM CG8476 INTERGENIC
3R	9188833	3R_9188833_SNP [dm3] 3R_13363111_SNP [dm6]	G	C	6.397e^-5	0.928	INTRON poly
3R	22993880	3R_22993880_SNP [dm3] 3R_27168158_SNP [dm6]	T	C	6.402e^-5	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	15731401	2R_15731401_INS [dm3] 2R_19843896_INS [dm6]	C	CC	6.529e^-5	0.928	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8072946	3L_8072946_SNP [dm3] 3L_8079846_SNP [dm6]	T	C	6.551e^-5	0.928	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	9580766	3R_9580766_SNP [dm3] 3R_13755044_SNP [dm6]	C	G	6.553e^-5	0.928	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17086844	3R_17086844_SNP [dm3] 3R_21261122_SNP [dm6]	G	T	6.558e^-5	0.928	INTRON ETHR
2L	6537257	2L_6537257_SNP [dm3] 2L_6537257_SNP [dm6]	A	T	6.742e^-5	0.928	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19270561	3R_19270561_SNP [dm3] 3R_23444839_SNP [dm6]	T	G	6.837e^-5	0.928	INTRON CG4374
X	19887635	X_19887635_SNP [dm3] X_19993602_SNP [dm6]	A	G	6.887e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5972892	2R_5972892_SNP [dm3] 2R_10085387_SNP [dm6]	A	G	6.909e^-5	0.928	UTR_5_PRIME CG2269 DOWNSTREAM sut4
2L	12479333	2L_12479333_SNP [dm3] 2L_12479333_SNP [dm6]	A	C	6.936e^-5	0.928	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19110441	X_19110441_SNP [dm3] X_19216408_SNP [dm6]	G	A	6.966e^-5	0.928	SYNONYMOUS_CODING Muc18B	TF binding site BDTNP1_TFBS_da
3L	18721812	3L_18721812_SNP [dm3] 3L_18728712_SNP [dm6]	C	G	7.072e^-5	0.928	INTERGENIC
3L	8606691	3L_8606691_SNP [dm3] 3L_8613591_SNP [dm6]	A	G	7.150e^-5	0.928	INTRON CG6282
3L	15454159	3L_15454159_SNP [dm3] 3L_15461059_SNP [dm6]	T	A	7.296e^-5	0.928	INTERGENIC
2L	16715980	2L_16715980_SNP [dm3] 2L_16715980_SNP [dm6]	A	G	7.456e^-5	0.928	UTR_5_PRIME CG31808 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	9026235	2L_9026235_SNP [dm3] 2L_9026235_SNP [dm6]	G	T	7.480e^-5	0.928	UPSTREAM CG9582 INTRON CG9582 EXON CR44352	TF binding site BDTNP1_TFBS_twi
2R	10198610	2R_10198610_INS [dm3] 2R_14311105_INS [dm6]	T	TAT	7.658e^-5	0.928	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9126097	3R_9126097_SNP [dm3] 3R_13300375_SNP [dm6]	C	T	7.659e^-5	0.928	SYNONYMOUS_CODING CG8774
3R	9965442	3R_9965442_SNP [dm3] 3R_14139720_SNP [dm6]	G	A	7.725e^-5	0.928	INTERGENIC
2R	6809283	2R_6809283_INS [dm3] 2R_10921778_INS [dm6]	T	TGG	7.876e^-5	0.928	INTERGENIC
3R	2720723	3R_2720723_SNP [dm3] 3R_6895001_SNP [dm6]	A	T	7.991e^-5	0.928	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	6488565	3L_6488565_SNP [dm3] 3L_6495465_SNP [dm6]	T	C	8.008e^-5	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	14755741	3L_14755741_SNP [dm3] 3L_14762641_SNP [dm6]	A	T	8.137e^-5	0.928	UPSTREAM CG33260 INTRON CG9384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9482623	2R_9482623_SNP [dm3] 2R_13595118_SNP [dm6]	A	G	8.141e^-5	0.928	SYNONYMOUS_CODING CG6197	TF binding site mE1_TFBS_sens
3R	27838948	3R_27838948_SNP [dm3] 3R_32013226_SNP [dm6]	A	T	8.206e^-5	0.928	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8734277	X_8734277_SNP [dm3] X_8840244_SNP [dm6]	G	A	8.310e^-5	0.928	INTRON CG12075
3R	17578020	3R_17578020_SNP [dm3] 3R_21752298_SNP [dm6]	C	G	8.316e^-5	0.928	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11660297	3R_11660297_SNP [dm3] 3R_15834575_SNP [dm6]	A	C	8.337e^-5	0.928	UPSTREAM Arpc3A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	25851910	3R_25851910_SNP [dm3] 3R_30026188_SNP [dm6]	T	C	8.419e^-5	0.928	INTRON Axn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9983246	3L_9983246_SNP [dm3] 3L_9990146_SNP [dm6]	C	T	8.462e^-5	0.928	INTRON dpr6
X	19887841	X_19887841_SNP [dm3] X_19993808_SNP [dm6]	T	C	8.514e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5966890	2R_5966890_SNP [dm3] 2R_10079385_SNP [dm6]	A	T	8.600e^-5	0.928	INTRON egr	TF binding site BDTNP1_TFBS_dl
3R	25781946	3R_25781946_SNP [dm3] 3R_29956224_SNP [dm6]	T	C	8.654e^-5	0.928	INTRON TkR99D
X	6932448	X_6932448_SNP [dm3] X_7038415_SNP [dm6]	T	A	8.750e^-5	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6932483	X_6932483_SNP [dm3] X_7038450_SNP [dm6]	A	G	8.750e^-5	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6932521	X_6932521_SNP [dm3] X_7038488_SNP [dm6]	A	C	8.750e^-5	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6932566	X_6932566_SNP [dm3] X_7038533_SNP [dm6]	A	C	8.750e^-5	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18801256	2L_18801256_SNP [dm3] 2L_18801256_SNP [dm6]	G	A	8.773e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19055683	X_19055683_SNP [dm3] X_19161650_SNP [dm6]	G	T	8.777e^-5	0.928	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
X	3182214	X_3182214_SNP [dm3] X_3288181_SNP [dm6]	T	G	8.837e^-5	0.928	INTRON dnc	TF binding site BDTNP1_TFBS_dl
X	19887561	X_19887561_SNP [dm3] X_19993528_SNP [dm6]	G	T	8.996e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6498249	X_6498249_SNP [dm3] X_6604216_SNP [dm6]	G	A	9.007e^-5	0.928	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24721445	3R_24721445_SNP [dm3] 3R_28895723_SNP [dm6]	T	A	9.051e^-5	0.928	INTRON Doa
2L	3439686	2L_3439686_SNP [dm3] 2L_3439686_SNP [dm6]	C	A	9.153e^-5	0.928	INTERGENIC
3L	9983259	3L_9983259_SNP [dm3] 3L_9990159_SNP [dm6]	T	A	9.203e^-5	0.928	INTRON dpr6
3R	20613366	3R_20613366_SNP [dm3] 3R_24787644_SNP [dm6]	A	G	9.310e^-5	0.928	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5953230	2R_5953230_SNP [dm3] 2R_10065725_SNP [dm6]	C	G	9.483e^-5	0.928	SYNONYMOUS_CODING CG2292 UPSTREAM mRpL42	TF binding site mE1_TFBS_sens
3R	15656902	3R_15656902_SNP [dm3] 3R_19831180_SNP [dm6]	T	G	9.511e^-5	0.928	INTRON bnl
3R	15656910	3R_15656910_SNP [dm3] 3R_19831188_SNP [dm6]	G	T	9.511e^-5	0.928	INTRON bnl
3L	23954942	3L_23954942_SNP [dm3] 3L_23961842_SNP [dm6]	A	C	9.515e^-5	0.928	INTRON CG40470
3R	2780286	3R_2780286_SNP [dm3] 3R_6954564_SNP [dm6]	A	G	9.531e^-5	0.928	INTRON Antp
3L	8900826	3L_8900826_SNP [dm3] 3L_8907726_SNP [dm6]	T	A	9.788e^-5	0.928	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
3L	5466620	3L_5466620_SNP [dm3] 3L_5473520_SNP [dm6]	G	A	9.852e^-5	0.928	INTERGENIC
3L	12701609	3L_12701609_SNP [dm3] 3L_12708509_SNP [dm6]	C	T	9.985e^-5	0.928	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19752318	3R_19752318_SNP [dm3] 3R_23926596_SNP [dm6]	C	A	1.001e^-4	0.928	SYNONYMOUS_CODING CG13601 UTR_3_PRIME CG13601 DOWNSTREAM Ndc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19563212	3R_19563212_SNP [dm3] 3R_23737490_SNP [dm6]	C	G	1.001e^-4	0.928	INTRON Hmgcr
2R	10334225	2R_10334225_INS [dm3] 2R_14446720_INS [dm6]	T	TC	1.017e^-4	0.928	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9415394	2L_9415394_SNP [dm3] 2L_9415394_SNP [dm6]	A	C	1.021e^-4	0.928	UPSTREAM Shawl INTERGENIC
2R	15731403	2R_15731403_SNP [dm3] 2R_19843898_SNP [dm6]	T	A	1.024e^-4	0.928	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1730178	2L_1730178_SNP [dm3] 2L_1730178_SNP [dm6]	C	T	1.029e^-4	0.928	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1107585	2L_1107585_SNP [dm3] 2L_1107585_SNP [dm6]	T	C	1.034e^-4	0.928	SYNONYMOUS_CODING mtRNApol UPSTREAM CG14339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
2L	8135589	2L_8135589_SNP [dm3] 2L_8135589_SNP [dm6]	T	A	1.037e^-4	0.928	NON_SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	18056766	3L_18056766_SNP [dm3] 3L_18063666_SNP [dm6]	G	A	1.041e^-4	0.928	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24230669	3R_24230669_SNP [dm3] 3R_28404947_SNP [dm6]	G	A	1.046e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16711441	2L_16711441_SNP [dm3] 2L_16711441_SNP [dm6]	A	C	1.059e^-4	0.928	INTRON CG31808	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15478907	3L_15478907_SNP [dm3] 3L_15485807_SNP [dm6]	C	G	1.062e^-4	0.928	UPSTREAM Ran-like INTERGENIC
3R	6518279	3R_6518279_SNP [dm3] 3R_10692557_SNP [dm6]	T	A	1.066e^-4	0.928	SYNONYMOUS_CODING Skeletor UTR_5_PRIME Skeletor	TF binding site mE1_TFBS_cad
2L	12479531	2L_12479531_DEL [dm3] 2L_12479531_DEL [dm6]	AA	A	1.067e^-4	0.928	INTRON bun	TF binding site BDTNP1_TFBS_twi
X	3243348	X_3243348_SNP [dm3] X_3349315_SNP [dm6]	C	T	1.071e^-4	0.928	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17552099	2R_17552099_SNP [dm3] 2R_21664594_SNP [dm6]	T	C	1.094e^-4	0.928	SYNONYMOUS_CODING CG42362 UTR_5_PRIME CG42363 DOWNSTREAM CR44748	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18735462	2R_18735462_SNP [dm3] 2R_22847939_SNP [dm6]	G	A	1.094e^-4	0.928	NON_SYNONYMOUS_CODING CG13531 DOWNSTREAM CG3649
2R	18735478	2R_18735478_SNP [dm3] 2R_22847955_SNP [dm6]	G	A	1.094e^-4	0.928	SYNONYMOUS_CODING CG13531 DOWNSTREAM CG3649
2R	16810568	2R_16810568_SNP [dm3] 2R_20923063_SNP [dm6]	C	T	1.095e^-4	0.928	NON_SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4766300	2L_4766300_SNP [dm3] 2L_4766300_SNP [dm6]	G	A	1.101e^-4	0.928	INTRON CG15630
2R	4856189	2R_4856189_SNP [dm3] 2R_8968684_SNP [dm6]	T	A	1.124e^-4	0.928	UPSTREAM CG8216 DOWNSTREAM CG8213 INTERGENIC
2L	16711362	2L_16711362_SNP [dm3] 2L_16711362_SNP [dm6]	C	T	1.135e^-4	0.928	INTRON CG31808	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17578077	3R_17578077_SNP [dm3] 3R_21752355_SNP [dm6]	G	C	1.145e^-4	0.928	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16728711	2L_16728711_SNP [dm3] 2L_16728711_SNP [dm6]	T	G	1.173e^-4	0.928	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	6932484	X_6932484_SNP [dm3] X_7038451_SNP [dm6]	T	C	1.175e^-4	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	1943019	2R_1943019_SNP [dm3] 2R_6055514_SNP [dm6]	C	T	1.213e^-4	0.928	INTRON CCHa2-R
3R	17841583	3R_17841583_SNP [dm3] 3R_22015861_SNP [dm6]	T	G	1.216e^-4	0.928	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	17616714	2R_17616714_DEL [dm3] 2R_21729209_DEL [dm6]	AA	A	1.218e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22987207	3R_22987207_SNP [dm3] 3R_27161485_SNP [dm6]	C	T	1.227e^-4	0.928	NON_SYNONYMOUS_CODING CG5909
3R	17250699	3R_17250699_SNP [dm3] 3R_21424977_SNP [dm6]	A	T	1.237e^-4	0.928	INTRON lbl
3R	22673992	3R_22673992_SNP [dm3] 3R_26848270_SNP [dm6]	C	A	1.273e^-4	0.928	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26587170	3R_26587170_SNP [dm3] 3R_30761448_SNP [dm6]	A	G	1.278e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3132465	3L_3132465_SNP [dm3] 3L_3132465_SNP [dm6]	G	A	1.282e^-4	0.928	SYNONYMOUS_CODING CG11537 INTRON CG11537	TF binding site mE1_TFBS_chinmo
2L	5967361	2L_5967361_SNP [dm3] 2L_5967361_SNP [dm6]	T	C	1.283e^-4	0.928	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18621727	3R_18621727_SNP [dm3] 3R_22796005_SNP [dm6]	A	G	1.283e^-4	0.928	INTERGENIC
2R	10682634	2R_10682634_SNP [dm3] 2R_14795129_SNP [dm6]	A	G	1.288e^-4	0.928	INTRON kn
3L	10011195	3L_10011195_SNP [dm3] 3L_10018095_SNP [dm6]	A	G	1.295e^-4	0.928	INTRON dpr6
3L	11353649	3L_11353649_SNP [dm3] 3L_11360549_SNP [dm6]	C	T	1.296e^-4	0.928	INTERGENIC
2L	16086365	2L_16086365_SNP [dm3] 2L_16086365_SNP [dm6]	A	T	1.310e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9188796	3R_9188796_SNP [dm3] 3R_13363074_SNP [dm6]	G	A	1.316e^-4	0.928	INTRON poly
3R	9188878	3R_9188878_DEL [dm3] 3R_13363156_DEL [dm6]	GAGAGTAAACAAG...	G	1.316e^-4	0.928	INTRON poly
3L	19204222	3L_19204222_SNP [dm3] 3L_19211122_SNP [dm6]	T	C	1.320e^-4	0.928	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	13481058	3R_13481058_SNP [dm3] 3R_17655336_SNP [dm6]	C	T	1.324e^-4	0.928	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13792952	2R_13792952_SNP [dm3] 2R_17905447_SNP [dm6]	C	T	1.328e^-4	0.928	INTRON Elk
2L	16716843	2L_16716843_DEL [dm3] 2L_16716843_DEL [dm6]	GCTGTAACATAAACAGTG...	G	1.340e^-4	0.928	UPSTREAM CG31808 INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19199279	3R_19199279_SNP [dm3] 3R_23373557_SNP [dm6]	T	A	1.350e^-4	0.928	UTR_3_PRIME CG42827 UPSTREAM CR44322 & 1 other
3R	19199286	3R_19199286_SNP [dm3] 3R_23373564_SNP [dm6]	T	A	1.350e^-4	0.928	UTR_3_PRIME CG42827 UPSTREAM CR44322 & 1 other
3L	15896610	3L_15896610_SNP [dm3] 3L_15903510_SNP [dm6]	T	C	1.356e^-4	0.928	INTRON sff
3R	9580660	3R_9580660_SNP [dm3] 3R_13754938_SNP [dm6]	C	A	1.357e^-4	0.928	NON_SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18460876	2R_18460876_SNP [dm3] 2R_22573371_SNP [dm6]	T	C	1.376e^-4	0.928	INTRON dnr1
X	4912786	X_4912786_SNP [dm3] X_5018753_SNP [dm6]	A	T	1.382e^-4	0.928	INTRON CR44833	TF binding site mE1_TFBS_inv
X	8758667	X_8758667_SNP [dm3] X_8864634_SNP [dm6]	C	A	1.399e^-4	0.928	INTRON CG12075
2L	2173318	2L_2173318_SNP [dm3] 2L_2173318_SNP [dm6]	A	C	1.399e^-4	0.928	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_disco
2R	17727518	2R_17727518_SNP [dm3] 2R_21840013_SNP [dm6]	C	T	1.412e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3660066	3L_3660066_SNP [dm3] 3L_3660066_SNP [dm6]	A	G	1.413e^-4	0.928	DOWNSTREAM CG43098 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23936880	3R_23936880_SNP [dm3] 3R_28111158_SNP [dm6]	G	A	1.416e^-4	0.928	INTERGENIC
3R	2718736	3R_2718736_SNP [dm3] 3R_6893014_SNP [dm6]	T	C	1.418e^-4	0.928	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	6488513	3L_6488513_SNP [dm3] 3L_6495413_SNP [dm6]	G	C	1.418e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	8391872	2L_8391872_SNP [dm3] 2L_8391872_SNP [dm6]	T	A	1.420e^-4	0.928	DOWNSTREAM Acp29AB INTRON CG42820
2L	10903073	2L_10903073_SNP [dm3] 2L_10903073_SNP [dm6]	T	A	1.429e^-4	0.928	DOWNSTREAM CR45724 INTERGENIC
X	9440338	X_9440338_SNP [dm3] X_9546305_SNP [dm6]	C	T	1.430e^-4	0.928	INTRON CG32700
X	21978700	X_21978700_SNP [dm3] X_22576864_SNP [dm6]	C	T	1.430e^-4	0.928	INTERGENIC	transposable element FlyBase
3L	19865075	3L_19865075_SNP [dm3] 3L_19871975_SNP [dm6]	C	T	1.451e^-4	0.928	UPSTREAM Rab8 INTRON CG8334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	19867574	3L_19867574_SNP [dm3] 3L_19874474_SNP [dm6]	A	G	1.451e^-4	0.928	INTRON CG8334	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19887668	X_19887668_SNP [dm3] X_19993635_SNP [dm6]	T	A	1.458e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13720803	2L_13720803_SNP [dm3] 2L_13720803_SNP [dm6]	G	T	1.466e^-4	0.928	INTERGENIC
X	13989004	X_13989004_SNP [dm3] X_14094971_SNP [dm6]	T	G	1.470e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2674809	3R_2674809_SNP [dm3] 3R_6849087_SNP [dm6]	A	T	1.473e^-4	0.928	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18191647	3L_18191647_SNP [dm3] 3L_18198547_SNP [dm6]	T	C	1.480e^-4	0.928	INTERGENIC
3L	3323232	3L_3323232_SNP [dm3] 3L_3323232_SNP [dm6]	C	T	1.484e^-4	0.928	SYNONYMOUS_CODING CG11526 DOWNSTREAM CG12016 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10893899	2L_10893899_SNP [dm3] 2L_10893899_SNP [dm6]	G	C	1.486e^-4	0.928	DOWNSTREAM CR44491 INTERGENIC
3R	2830528	3R_2830528_SNP [dm3] 3R_7004806_SNP [dm6]	G	A	1.488e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26351582	3R_26351582_SNP [dm3] 3R_30525860_SNP [dm6]	G	C	1.496e^-4	0.928	INTRON jdp
X	5605885	X_5605885_SNP [dm3] X_5711852_SNP [dm6]	C	T	1.501e^-4	0.928	INTRON CG33080
2L	7218835	2L_7218835_SNP [dm3] 2L_7218835_SNP [dm6]	G	A	1.512e^-4	0.928	UTR_3_PRIME CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12817765	X_12817765_SNP [dm3] X_12923732_SNP [dm6]	C	T	1.523e^-4	0.928	INTRON fne
3L	6488515	3L_6488515_SNP [dm3] 3L_6495415_SNP [dm6]	G	A	1.542e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	19151227	2R_19151227_SNP [dm3] 2R_23263704_SNP [dm6]	G	A	1.544e^-4	0.928	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19151228	2R_19151228_SNP [dm3] 2R_23263705_SNP [dm6]	A	T	1.544e^-4	0.928	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4856828	2R_4856828_SNP [dm3] 2R_8969323_SNP [dm6]	T	G	1.549e^-4	0.928	DOWNSTREAM CG8213 INTERGENIC
3L	734547	3L_734547_INS [dm3] 3L_734547_INS [dm6]	T	TGT	1.553e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens
2R	7615385	2R_7615385_SNP [dm3] 2R_11727880_SNP [dm6]	G	A	1.565e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3378508	2L_3378508_SNP [dm3] 2L_3378508_SNP [dm6]	A	T	1.571e^-4	0.928	UTR_3_PRIME Ptpa
3L	14734020	3L_14734020_SNP [dm3] 3L_14740920_SNP [dm6]	G	A	1.600e^-4	0.928	INTRON ome
2L	6541302	2L_6541302_SNP [dm3] 2L_6541302_SNP [dm6]	C	T	1.604e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
X	6498248	X_6498248_SNP [dm3] X_6604215_SNP [dm6]	A	C	1.621e^-4	0.928	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9196079	2R_9196079_INS [dm3] 2R_13308574_INS [dm6]	A	ATAAA	1.626e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17841929	3R_17841929_SNP [dm3] 3R_22016207_SNP [dm6]	T	A	1.634e^-4	0.928	UTR_3_PRIME CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
3R	17841994	3R_17841994_SNP [dm3] 3R_22016272_SNP [dm6]	C	A	1.634e^-4	0.928	DOWNSTREAM CG6439 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	13245520	3L_13245520_SNP [dm3] 3L_13252420_SNP [dm6]	T	A	1.643e^-4	0.928	INTRON caps
3R	18836276	3R_18836276_SNP [dm3] 3R_23010554_SNP [dm6]	G	T	1.644e^-4	0.928	UTR_5_PRIME CG34375 UPSTREAM CG34375	TF binding site mE1_TFBS_chinmo
2R	16496516	2R_16496516_SNP [dm3] 2R_20609011_SNP [dm6]	G	A	1.657e^-4	0.928	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2174816	2L_2174816_SNP [dm3] 2L_2174816_SNP [dm6]	C	T	1.660e^-4	0.928	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2962893	3L_2962893_SNP [dm3] 3L_2962893_SNP [dm6]	G	A	1.669e^-4	0.928	SPLICE_SITE_REGION Or63a INTRON Or63a
3R	9602205	3R_9602205_SNP [dm3] 3R_13776483_SNP [dm6]	T	C	1.670e^-4	0.928	SYNONYMOUS_CODING CG9297
3L	11793487	3L_11793487_SNP [dm3] 3L_11800387_SNP [dm6]	T	A	1.675e^-4	0.928	INTRON CG10361
3R	27839894	3R_27839894_SNP [dm3] 3R_32014172_SNP [dm6]	T	C	1.675e^-4	0.928	DOWNSTREAM CR45556 INTRON heph
3L	11064515	3L_11064515_SNP [dm3] 3L_11071415_SNP [dm6]	A	C	1.676e^-4	0.928	INTRON Mocs1
X	8884691	X_8884691_SNP [dm3] X_8990658_SNP [dm6]	G	A	1.691e^-4	0.928	INTRON rdgA & 1 other
2L	10339651	2L_10339651_SNP [dm3] 2L_10339651_SNP [dm6]	G	T	1.694e^-4	0.928	DOWNSTREAM GATAd INTRON SamDC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9195472	2R_9195472_SNP [dm3] 2R_13307967_SNP [dm6]	C	T	1.702e^-4	0.928	INTERGENIC
3L	18880071	3L_18880071_SNP [dm3] 3L_18886971_SNP [dm6]	C	T	1.706e^-4	0.928	INTRON CG3961	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7531009	2L_7531009_DEL [dm3] 2L_7531009_DEL [dm6]	AGA	A	1.718e^-4	0.928	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11655074	3R_11655074_SNP [dm3] 3R_15829352_SNP [dm6]	G	C	1.730e^-4	0.928	SYNONYMOUS_CODING CG4576 INTRON rec
3R	11655083	3R_11655083_SNP [dm3] 3R_15829361_SNP [dm6]	G	C	1.730e^-4	0.928	SYNONYMOUS_CODING CG4576 INTRON rec
3R	11657582	3R_11657582_SNP [dm3] 3R_15831860_SNP [dm6]	C	T	1.730e^-4	0.928	NON_SYNONYMOUS_CODING rec DOWNSTREAM CG43318	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23937217	3R_23937217_SNP [dm3] 3R_28111495_SNP [dm6]	C	T	1.732e^-4	0.928	INTERGENIC
2L	10903072	2L_10903072_SNP [dm3] 2L_10903072_SNP [dm6]	T	C	1.733e^-4	0.928	DOWNSTREAM CR45724 INTERGENIC
X	8734290	X_8734290_SNP [dm3] X_8840257_SNP [dm6]	C	T	1.735e^-4	0.928	INTRON CG12075
2L	3833064	2L_3833064_SNP [dm3] 2L_3833064_SNP [dm6]	C	A	1.747e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20718001	3R_20718001_SNP [dm3] 3R_24892279_SNP [dm6]	G	T	1.754e^-4	0.928	UPSTREAM CG31121 INTRON CG31121
3L	12470063	3L_12470063_SNP [dm3] 3L_12476963_SNP [dm6]	G	A	1.754e^-4	0.928	NON_SYNONYMOUS_CODING CG10663
2L	10337086	2L_10337086_SNP [dm3] 2L_10337086_SNP [dm6]	T	G	1.767e^-4	0.928	INTRON GATAd
2R	2434245	2R_2434245_DEL [dm3] 2R_6546740_DEL [dm6]	AA	G	1.775e^-4	0.928	INTRON jing	TF binding site mE1_TFBS_cad
X	13751966	X_13751966_SNP [dm3] X_13857933_SNP [dm6]	G	A	1.784e^-4	0.928	DOWNSTREAM mamo INTRON mamo
2R	16736757	2R_16736757_SNP [dm3] 2R_20849252_SNP [dm6]	T	A	1.814e^-4	0.928	DOWNSTREAM CG9993 INTRON CG17999
2L	6537276	2L_6537276_SNP [dm3] 2L_6537276_SNP [dm6]	T	C	1.835e^-4	0.928	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11733840	2L_11733840_SNP [dm3] 2L_11733840_SNP [dm6]	A	C	1.839e^-4	0.928	INTERGENIC
2L	11926301	2L_11926301_SNP [dm3] 2L_11926301_SNP [dm6]	A	G	1.850e^-4	0.928	INTRON Pde1c
3L	10432534	3L_10432534_SNP [dm3] 3L_10439434_SNP [dm6]	A	G	1.860e^-4	0.928	INTERGENIC
3L	10432541	3L_10432541_SNP [dm3] 3L_10439441_SNP [dm6]	T	C	1.860e^-4	0.928	INTERGENIC
2R	9849000	2R_9849000_SNP [dm3] 2R_13961495_SNP [dm6]	T	C	1.860e^-4	0.928	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9849044	2R_9849044_SNP [dm3] 2R_13961539_SNP [dm6]	A	C	1.860e^-4	0.928	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14183374	2L_14183374_SNP [dm3] 2L_14183374_SNP [dm6]	C	A	1.860e^-4	0.928	INTERGENIC
2R	19842025	2R_19842025_SNP [dm3] 2R_23954502_SNP [dm6]	G	A	1.862e^-4	0.928	SYNONYMOUS_CODING thoc5 UPSTREAM CG3803	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17076235	2R_17076235_SNP [dm3] 2R_21188730_SNP [dm6]	G	T	1.864e^-4	0.928	SYNONYMOUS_CODING tud
2R	12455651	2R_12455651_SNP [dm3] 2R_16568146_SNP [dm6]	C	T	1.864e^-4	0.928	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	14554690	3R_14554690_SNP [dm3] 3R_18728968_SNP [dm6]	G	A	1.871e^-4	0.928	SYNONYMOUS_CODING Cha UPSTREAM CG7715	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9043673	2R_9043673_SNP [dm3] 2R_13156168_SNP [dm6]	T	C	1.885e^-4	0.928	SYNONYMOUS_CODING TppII
3L	15848118	3L_15848118_SNP [dm3] 3L_15855018_SNP [dm6]	T	A	1.894e^-4	0.928	INTRON pHCl
2L	12153668	2L_12153668_SNP [dm3] 2L_12153668_SNP [dm6]	G	T	1.895e^-4	0.928	SYNONYMOUS_CODING CG31760
3L	22006541	3L_22006541_SNP [dm3] 3L_22013441_SNP [dm6]	G	A	1.900e^-4	0.928	INTERGENIC
2L	21153268	2L_21153268_SNP [dm3] 2L_21153268_SNP [dm6]	C	A	1.901e^-4	0.928	INTERGENIC
3R	9221850	3R_9221850_SNP [dm3] 3R_13396128_SNP [dm6]	C	T	1.904e^-4	0.928	UPSTREAM CCHa2 DOWNSTREAM CG14374 INTERGENIC
3R	24230764	3R_24230764_SNP [dm3] 3R_28405042_SNP [dm6]	G	T	1.914e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12817831	X_12817831_SNP [dm3] X_12923798_SNP [dm6]	G	T	1.924e^-4	0.928	INTRON fne
3L	1627539	3L_1627539_SNP [dm3] 3L_1627539_SNP [dm6]	A	G	1.928e^-4	0.928	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8917727	3L_8917727_SNP [dm3] 3L_8924627_SNP [dm6]	T	C	1.933e^-4	0.928	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3L	16649736	3L_16649736_SNP [dm3] 3L_16656636_SNP [dm6]	T	C	1.935e^-4	0.928	INTRON Baldspot
X	12262403	X_12262403_SNP [dm3] X_12368370_SNP [dm6]	G	C	1.938e^-4	0.928	INTERGENIC
3R	9858605	3R_9858605_SNP [dm3] 3R_14032883_SNP [dm6]	T	C	1.938e^-4	0.928	UPSTREAM rdx INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14093479	3L_14093479_SNP [dm3] 3L_14100379_SNP [dm6]	A	T	1.952e^-4	0.928	INTERGENIC
X	8552605	X_8552605_SNP [dm3] X_8658572_SNP [dm6]	C	A	1.954e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25170020	3R_25170020_SNP [dm3] 3R_29344298_SNP [dm6]	C	G	1.957e^-4	0.928	INTERGENIC
3R	25606113	3R_25606113_DEL [dm3] 3R_29780391_DEL [dm6]	AA	A	1.969e^-4	0.928	UTR_5_PRIME fig INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15742881	3L_15742881_SNP [dm3] 3L_15749781_SNP [dm6]	T	A	1.975e^-4	0.928	INTERGENIC
X	18305901	X_18305901_SNP [dm3] X_18411868_SNP [dm6]	C	G	1.977e^-4	0.928	INTERGENIC
3L	4832083	3L_4832083_SNP [dm3] 3L_4832083_SNP [dm6]	A	G	1.986e^-4	0.928	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10115672	2L_10115672_SNP [dm3] 2L_10115672_SNP [dm6]	C	G	1.995e^-4	0.928	INTRON CG44153 & 1 other
3L	8705067	3L_8705067_SNP [dm3] 3L_8711967_SNP [dm6]	G	A	1.998e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
3L	8705075	3L_8705075_SNP [dm3] 3L_8711975_SNP [dm6]	T	C	1.998e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
3L	15147363	3L_15147363_SNP [dm3] 3L_15154263_SNP [dm6]	G	A	1.998e^-4	0.928	UTR_3_PRIME FucTA & 1 other
2R	17720619	2R_17720619_SNP [dm3] 2R_21833114_SNP [dm6]	A	G	2.005e^-4	0.928	INTRON CG34040	TF binding site mE1_TFBS_sens
2R	11037184	2R_11037184_SNP [dm3] 2R_15149679_SNP [dm6]	T	C	2.021e^-4	0.928	UTR_3_PRIME CG7544
3L	12358095	3L_12358095_SNP [dm3] 3L_12364995_SNP [dm6]	T	A	2.022e^-4	0.928	INTERGENIC
3R	20760449	3R_20760449_SNP [dm3] 3R_24934727_SNP [dm6]	A	G	2.028e^-4	0.928	UTR_3_PRIME CG11771 DOWNSTREAM Osbp
2L	11053300	2L_11053300_SNP [dm3] 2L_11053300_SNP [dm6]	T	C	2.030e^-4	0.928	INTRON Samuel
3L	15848100	3L_15848100_SNP [dm3] 3L_15855000_SNP [dm6]	A	C	2.035e^-4	0.928	INTRON pHCl
3R	17842002	3R_17842002_SNP [dm3] 3R_22016280_SNP [dm6]	G	A	2.037e^-4	0.928	DOWNSTREAM CG6439 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	8900782	3L_8900782_SNP [dm3] 3L_8907682_SNP [dm6]	T	A	2.057e^-4	0.928	INTRON mfr
3R	19124815	3R_19124815_SNP [dm3] 3R_23299093_SNP [dm6]	T	A	2.058e^-4	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24784396	3R_24784396_SNP [dm3] 3R_28958674_SNP [dm6]	A	C	2.061e^-4	0.928	INTRON CG14521	TF binding site mE1_TFBS_chinmo
3L	8457906	3L_8457906_SNP [dm3] 3L_8464806_SNP [dm6]	A	G	2.069e^-4	0.928	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13654281	2R_13654281_SNP [dm3] 2R_17766776_SNP [dm6]	C	T	2.087e^-4	0.928	UPSTREAM CR44416 & 1 other DOWNSTREAM CG14488 INTRON OstDelta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	13655402	2R_13655402_SNP [dm3] 2R_17767897_SNP [dm6]	A	G	2.087e^-4	0.928	NON_SYNONYMOUS_CODING CG18635 UPSTREAM OstDelta & 1 other DOWNSTREAM CR44416	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15174364	2R_15174364_SNP [dm3] 2R_19286859_SNP [dm6]	G	A	2.087e^-4	0.928	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9602166	3R_9602166_SNP [dm3] 3R_13776444_SNP [dm6]	C	T	2.093e^-4	0.928	SYNONYMOUS_CODING CG9297
X	21256722	X_21256722_SNP [dm3] X_21385695_SNP [dm6]	G	T	2.093e^-4	0.928	UTR_3_PRIME Hlc DOWNSTREAM slgA
2R	17552072	2R_17552072_SNP [dm3] 2R_21664567_SNP [dm6]	C	A	2.096e^-4	0.928	NON_SYNONYMOUS_CODING CG42362 UTR_5_PRIME CG42363 DOWNSTREAM CR44748	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21654141	3L_21654141_DEL [dm3] 3L_21661041_DEL [dm6]	AA	A	2.104e^-4	0.928	INTRON CG43980
3R	9188851	3R_9188851_SNP [dm3] 3R_13363129_SNP [dm6]	C	T	2.130e^-4	0.928	INTRON poly
3L	16649733	3L_16649733_SNP [dm3] 3L_16656633_SNP [dm6]	G	A	2.156e^-4	0.928	INTRON Baldspot
2R	17076106	2R_17076106_SNP [dm3] 2R_21188601_SNP [dm6]	A	G	2.160e^-4	0.928	INTRON tud
X	21978672	X_21978672_SNP [dm3] X_22576836_SNP [dm6]	C	G	2.165e^-4	0.928	INTERGENIC	transposable element FlyBase
3L	11637298	3L_11637298_SNP [dm3] 3L_11644198_SNP [dm6]	T	C	2.168e^-4	0.928	NON_SYNONYMOUS_CODING CG6071
3L	14093141	3L_14093141_SNP [dm3] 3L_14100041_SNP [dm6]	T	G	2.170e^-4	0.928	INTERGENIC
3L	13245513	3L_13245513_SNP [dm3] 3L_13252413_SNP [dm6]	G	A	2.173e^-4	0.928	INTRON caps
3R	17186689	3R_17186689_INS [dm3] 3R_21360967_INS [dm6]	A	ATGAGATCGA	2.176e^-4	0.928	UTR_5_PRIME pre-mod_mdg4_-Z INTRON mod_mdg4_
3L	8595397	3L_8595397_SNP [dm3] 3L_8602297_SNP [dm6]	G	A	2.185e^-4	0.928	SYNONYMOUS_CODING RpL14 DOWNSTREAM CG5989 & 2 others	TF binding site mE1_TFBS_sens
2R	17720656	2R_17720656_SNP [dm3] 2R_21833151_SNP [dm6]	C	G	2.185e^-4	0.928	INTRON CG34040
2R	15079119	2R_15079119_SNP [dm3] 2R_19191614_SNP [dm6]	G	A	2.186e^-4	0.928	INTRON hppy
3R	19500249	3R_19500249_SNP [dm3] 3R_23674527_SNP [dm6]	T	C	2.198e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18822345	3R_18822345_SNP [dm3] 3R_22996623_SNP [dm6]	T	C	2.201e^-4	0.928	INTRON Nha2 EXON CR43454	TF binding site BDTNP1_TFBS_sna
3R	9126001	3R_9126001_SNP [dm3] 3R_13300279_SNP [dm6]	A	G	2.205e^-4	0.928	SYNONYMOUS_CODING CG8774
2R	4918466	2R_4918466_SNP [dm3] 2R_9030961_SNP [dm6]	A	T	2.210e^-4	0.928	UTR_5_PRIME CG8170
2R	18302449	2R_18302449_SNP [dm3] 2R_22414944_SNP [dm6]	G	A	2.241e^-4	0.928	SYNONYMOUS_CODING qkr58E-1 UPSTREAM qkr58E-2 DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16976193	3R_16976193_SNP [dm3] 3R_21150471_SNP [dm6]	T	C	2.245e^-4	0.928	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10903863	3L_10903863_SNP [dm3] 3L_10910763_SNP [dm6]	T	A	2.256e^-4	0.928	INTERGENIC
X	4234319	X_4234319_SNP [dm3] X_4340286_SNP [dm6]	C	A	2.259e^-4	0.928	INTRON norpA
3R	18896713	3R_18896713_SNP [dm3] 3R_23070991_SNP [dm6]	G	T	2.261e^-4	0.928	UTR_3_PRIME CG13830
2R	12541662	2R_12541662_SNP [dm3] 2R_16654157_SNP [dm6]	C	T	2.261e^-4	0.928	SYNONYMOUS_CODING Nach
3R	11652848	3R_11652848_SNP [dm3] 3R_15827126_SNP [dm6]	T	G	2.267e^-4	0.928	SYNONYMOUS_CODING CG4576 INTRON rec
3L	18647068	3L_18647068_INS [dm3] 3L_18653968_INS [dm6]	A	AAA	2.269e^-4	0.928	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11666627	3L_11666627_SNP [dm3] 3L_11673527_SNP [dm6]	G	T	2.297e^-4	0.928	INTRON CG32085
3R	19125164	3R_19125164_SNP [dm3] 3R_23299442_SNP [dm6]	C	T	2.299e^-4	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	6535619	2L_6535619_SNP [dm3] 2L_6535619_SNP [dm6]	C	T	2.299e^-4	0.928	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	17076031	2R_17076031_SNP [dm3] 2R_21188526_SNP [dm6]	C	T	2.309e^-4	0.928	NON_SYNONYMOUS_CODING tud
3L	5936154	3L_5936154_SNP [dm3] 3L_5943054_SNP [dm6]	G	A	2.310e^-4	0.928	INTRON CG33993
2L	8165098	2L_8165098_SNP [dm3] 2L_8165098_SNP [dm6]	C	T	2.311e^-4	0.928	INTRON Piezo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16966539	3R_16966539_SNP [dm3] 3R_21140817_SNP [dm6]	A	C	2.313e^-4	0.928	UTR_5_PRIME SNF4Agamma DOWNSTREAM meigo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12298495	2L_12298495_SNP [dm3] 2L_12298495_SNP [dm6]	C	G	2.320e^-4	0.928	INTRON aret	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15341168	3L_15341168_SNP [dm3] 3L_15348068_SNP [dm6]	G	A	2.322e^-4	0.928	INTERGENIC
2R	9196083	2R_9196083_SNP [dm3] 2R_13308578_SNP [dm6]	A	T	2.326e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15835702	3L_15835702_SNP [dm3] 3L_15842602_SNP [dm6]	G	C	2.327e^-4	0.928	DOWNSTREAM mir-263b INTRON CG32150
3R	23684509	3R_23684509_SNP [dm3] 3R_27858787_SNP [dm6]	G	T	2.328e^-4	0.928	INTRON CG34353
2R	14164045	2R_14164045_SNP [dm3] 2R_18276540_SNP [dm6]	G	A	2.332e^-4	0.928	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18352045	X_18352045_SNP [dm3] X_18458012_SNP [dm6]	C	T	2.342e^-4	0.928	INTRON CG32547
3R	10291647	3R_10291647_SNP [dm3] 3R_14465925_SNP [dm6]	T	C	2.353e^-4	0.928	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20437571	3L_20437571_SNP [dm3] 3L_20444471_SNP [dm6]	A	G	2.353e^-4	0.928	UPSTREAM CG5910 INTRON CG5910
2R	9195473	2R_9195473_SNP [dm3] 2R_13307968_SNP [dm6]	A	T	2.362e^-4	0.928	INTERGENIC
3R	11652578	3R_11652578_SNP [dm3] 3R_15826856_SNP [dm6]	G	A	2.368e^-4	0.928	INTRON rec & 1 other
3R	11652851	3R_11652851_SNP [dm3] 3R_15827129_SNP [dm6]	A	G	2.368e^-4	0.928	SYNONYMOUS_CODING CG4576 INTRON rec
3L	13209912	3L_13209912_SNP [dm3] 3L_13216812_SNP [dm6]	A	G	2.368e^-4	0.928	EXON CR43914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10432533	3L_10432533_SNP [dm3] 3L_10439433_SNP [dm6]	T	G	2.405e^-4	0.928	INTERGENIC
2R	17582031	2R_17582031_SNP [dm3] 2R_21694526_SNP [dm6]	G	A	2.411e^-4	0.928	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3R	26499678	3R_26499678_SNP [dm3] 3R_30673956_SNP [dm6]	G	A	2.413e^-4	0.928	INTERGENIC
3L	5950075	3L_5950075_DEL [dm3] 3L_5956975_DEL [dm6]	TT	T	2.414e^-4	0.928	INTERGENIC
3L	11353656	3L_11353656_SNP [dm3] 3L_11360556_SNP [dm6]	C	T	2.416e^-4	0.928	INTERGENIC
3R	2689170	3R_2689170_SNP [dm3] 3R_6863448_SNP [dm6]	A	G	2.417e^-4	0.928	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2765885	3L_2765885_SNP [dm3] 3L_2765885_SNP [dm6]	T	A	2.419e^-4	0.928	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2R	11037186	2R_11037186_SNP [dm3] 2R_15149681_SNP [dm6]	T	C	2.420e^-4	0.928	UTR_3_PRIME CG7544
2L	10502052	2L_10502052_SNP [dm3] 2L_10502052_SNP [dm6]	A	G	2.439e^-4	0.928	INTRON Myo31DF
3L	1626104	3L_1626104_SNP [dm3] 3L_1626104_SNP [dm6]	A	G	2.441e^-4	0.928	UTR_3_PRIME CG13928 UPSTREAM GC INTRON GC
X	19112912	X_19112912_INS [dm3] X_19218879_INS [dm6]	A	ATTA	2.443e^-4	0.928	INTERGENIC
3R	10552353	3R_10552353_SNP [dm3] 3R_14726631_SNP [dm6]	A	G	2.445e^-4	0.928	INTRON CG7530
X	13035758	X_13035758_SNP [dm3] X_13141725_SNP [dm6]	T	G	2.452e^-4	0.928	INTRON CG32645
X	22338444	X_22338444_INS [dm3] X_22936608_INS [dm6]	T	TGT	2.464e^-4	0.928	INTERGENIC
X	3231570	X_3231570_SNP [dm3] X_3337537_SNP [dm6]	C	T	2.485e^-4	0.928	SYNONYMOUS_CODING dnc INTRON CR44886
3L	2107251	3L_2107251_SNP [dm3] 3L_2107251_SNP [dm6]	G	T	2.488e^-4	0.928	INTRON sls	TF binding site BDTNP1_TFBS_dl
3R	15812333	3R_15812333_SNP [dm3] 3R_19986611_SNP [dm6]	A	C	2.493e^-4	0.928	INTRON Hs6st
3L	511793	3L_511793_SNP [dm3] 3L_511793_SNP [dm6]	T	C	2.493e^-4	0.928	INTRON klar
3L	6488624	3L_6488624_SNP [dm3] 3L_6495524_SNP [dm6]	T	A	2.500e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	9316567	2L_9316567_SNP [dm3] 2L_9316567_SNP [dm6]	A	T	2.500e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16976287	3R_16976287_SNP [dm3] 3R_21150565_SNP [dm6]	T	A	2.504e^-4	0.928	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22673993	3R_22673993_SNP [dm3] 3R_26848271_SNP [dm6]	G	A	2.507e^-4	0.928	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9861753	3R_9861753_SNP [dm3] 3R_14036031_SNP [dm6]	A	T	2.510e^-4	0.928	START_GAINED CG9922 UTR_5_PRIME CG9922 UPSTREAM CG9922 DOWNSTREAM CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	21256594	X_21256594_SNP [dm3] X_21385567_SNP [dm6]	T	G	2.516e^-4	0.928	UTR_3_PRIME Hlc DOWNSTREAM Hlc & 1 other
2R	4834843	2R_4834843_SNP [dm3] 2R_8947338_SNP [dm6]	A	G	2.522e^-4	0.928	UTR_5_PRIME CG8230 DOWNSTREAM CG33199 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10873634	3L_10873634_SNP [dm3] 3L_10880534_SNP [dm6]	A	T	2.525e^-4	0.928	DOWNSTREAM CG6409 & 1 other INTERGENIC
3R	19272589	3R_19272589_SNP [dm3] 3R_23446867_SNP [dm6]	A	G	2.534e^-4	0.928	INTRON CG4374
2R	9192754	2R_9192754_SNP [dm3] 2R_13305249_SNP [dm6]	A	C	2.548e^-4	0.928	INTERGENIC
2L	3051047	2L_3051047_SNP [dm3] 2L_3051047_SNP [dm6]	C	A	2.553e^-4	0.928	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
3R	19125200	3R_19125200_INS [dm3] 3R_23299478_INS [dm6]	C	CATC	2.555e^-4	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	27018795	3R_27018795_SNP [dm3] 3R_31193073_SNP [dm6]	T	C	2.561e^-4	0.928	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10862591	3R_10862591_SNP [dm3] 3R_15036869_SNP [dm6]	A	C	2.583e^-4	0.928	UPSTREAM RpL10Aa INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2780012	3R_2780012_SNP [dm3] 3R_6954290_SNP [dm6]	T	C	2.586e^-4	0.928	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13926413	3R_13926413_SNP [dm3] 3R_18100691_SNP [dm6]	A	T	2.587e^-4	0.928	INTRON sr
3R	13926414	3R_13926414_SNP [dm3] 3R_18100692_SNP [dm6]	T	C	2.587e^-4	0.928	INTRON sr
3R	10252495	3R_10252495_INS [dm3] 3R_14426773_INS [dm6]	T	TT	2.590e^-4	0.928	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9388848	2L_9388848_SNP [dm3] 2L_9388848_SNP [dm6]	T	C	2.600e^-4	0.928	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20855685	2L_20855685_SNP [dm3] 2L_20855685_SNP [dm6]	C	T	2.615e^-4	0.928	INTRON twit	TF binding site mE1_TFBS_inv
2R	16736735	2R_16736735_SNP [dm3] 2R_20849230_SNP [dm6]	A	G	2.624e^-4	0.928	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993
3L	10873623	3L_10873623_SNP [dm3] 3L_10880523_SNP [dm6]	C	T	2.631e^-4	0.928	DOWNSTREAM CG6409 & 1 other INTERGENIC
3L	14734085	3L_14734085_SNP [dm3] 3L_14740985_SNP [dm6]	G	T	2.637e^-4	0.928	INTRON ome
3R	26185253	3R_26185253_SNP [dm3] 3R_30359531_SNP [dm6]	A	G	2.643e^-4	0.928	INTRON hdc
3L	10720056	3L_10720056_SNP [dm3] 3L_10726956_SNP [dm6]	T	G	2.652e^-4	0.928	INTERGENIC
3L	10720059	3L_10720059_SNP [dm3] 3L_10726959_SNP [dm6]	T	C	2.652e^-4	0.928	INTERGENIC
2R	15394537	2R_15394537_SNP [dm3] 2R_19507032_SNP [dm6]	G	C	2.660e^-4	0.928	UPSTREAM tRNA:H:56E INTERGENIC
2R	16457997	2R_16457997_SNP [dm3] 2R_20570492_SNP [dm6]	C	A	2.666e^-4	0.928	INTRON qsm	TF binding site BDTNP1_TFBS_prd
3R	22673961	3R_22673961_SNP [dm3] 3R_26848239_SNP [dm6]	G	C	2.666e^-4	0.928	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16410357	X_16410357_SNP [dm3] X_16516324_SNP [dm6]	G	A	2.667e^-4	0.928	INTRON para	TF binding site mE1_TFBS_HSA
3L	2721481	3L_2721481_SNP [dm3] 3L_2721481_SNP [dm6]	G	C	2.685e^-4	0.928	NON_SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_chinmo
3L	15704772	3L_15704772_INS [dm3] 3L_15711672_INS [dm6]	T	TT	2.733e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9444586	2L_9444586_SNP [dm3] 2L_9444586_SNP [dm6]	A	G	2.748e^-4	0.928	INTRON numb
2R	15267035	2R_15267035_SNP [dm3] 2R_19379530_SNP [dm6]	A	G	2.758e^-4	0.928	SYNONYMOUS_CODING CG10062
X	6492896	X_6492896_SNP [dm3] X_6598863_SNP [dm6]	C	T	2.758e^-4	0.928	SYNONYMOUS_CODING APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6492899	X_6492899_SNP [dm3] X_6598866_SNP [dm6]	G	A	2.758e^-4	0.928	SYNONYMOUS_CODING APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12541680	2R_12541680_SNP [dm3] 2R_16654175_SNP [dm6]	C	T	2.762e^-4	0.928	SYNONYMOUS_CODING Nach
3R	502841	3R_502841_SNP [dm3] 3R_4677119_SNP [dm6]	A	C	2.764e^-4	0.928	INTRON CG43427
3L	9983208	3L_9983208_SNP [dm3] 3L_9990108_SNP [dm6]	A	C	2.774e^-4	0.928	INTRON dpr6
3L	8900800	3L_8900800_SNP [dm3] 3L_8907700_SNP [dm6]	G	A	2.778e^-4	0.928	INTRON mfr
3L	15877259	3L_15877259_DEL [dm3] 3L_15884159_DEL [dm6]	TCCAT	T	2.778e^-4	0.928	DOWNSTREAM CR44050 INTRON pHCl
2R	17729901	2R_17729901_SNP [dm3] 2R_21842396_SNP [dm6]	C	T	2.779e^-4	0.928	DOWNSTREAM tRNA:CR30407 INTERGENIC
2R	7812281	2R_7812281_SNP [dm3] 2R_11924776_SNP [dm6]	A	T	2.788e^-4	0.928	INTERGENIC
3R	14875515	3R_14875515_SNP [dm3] 3R_19049793_SNP [dm6]	A	T	2.806e^-4	0.928	INTRON cdi	TF binding site mE1_TFBS_sens
3R	19272680	3R_19272680_SNP [dm3] 3R_23446958_SNP [dm6]	G	T	2.815e^-4	0.928	INTRON CG4374
2R	19921622	2R_19921622_SNP [dm3] 2R_24034099_SNP [dm6]	T	C	2.821e^-4	0.928	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	9222433	3R_9222433_SNP [dm3] 3R_13396711_SNP [dm6]	G	A	2.832e^-4	0.928	UTR_3_PRIME CG14374
X	4986586	X_4986586_SNP [dm3] X_5092553_SNP [dm6]	T	A	2.845e^-4	0.928	INTRON rg & 1 other
3L	7069251	3L_7069251_SNP [dm3] 3L_7076151_SNP [dm6]	C	A	2.858e^-4	0.928	UPSTREAM CG34030 INTRON CG8641
3R	19471368	3R_19471368_SNP [dm3] 3R_23645646_SNP [dm6]	T	C	2.860e^-4	0.928	INTRON CG31145
2L	9016178	2L_9016178_SNP [dm3] 2L_9016178_SNP [dm6]	C	G	2.873e^-4	0.928	INTERGENIC
2L	12701411	2L_12701411_SNP [dm3] 2L_12701411_SNP [dm6]	G	A	2.885e^-4	0.928	UTR_3_PRIME CG5776 UPSTREAM CG17036 DOWNSTREAM CG5776
3R	25858639	3R_25858639_SNP [dm3] 3R_30032917_SNP [dm6]	A	T	2.896e^-4	0.928	INTRON Axn	TF binding site mE1_TFBS_cad
3R	19211995	3R_19211995_SNP [dm3] 3R_23386273_SNP [dm6]	G	A	2.907e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21243250	3R_21243250_SNP [dm3] 3R_25417528_SNP [dm6]	G	A	2.907e^-4	0.928	INTRON Fur1
3L	3534489	3L_3534489_SNP [dm3] 3L_3534489_SNP [dm6]	T	A	2.913e^-4	0.928	INTRON Eip63E
2L	9415399	2L_9415399_SNP [dm3] 2L_9415399_SNP [dm6]	G	T	2.913e^-4	0.928	UPSTREAM Shawl INTERGENIC
2L	9415407	2L_9415407_SNP [dm3] 2L_9415407_SNP [dm6]	A	C	2.913e^-4	0.928	UPSTREAM Shawl INTERGENIC
2L	9415411	2L_9415411_SNP [dm3] 2L_9415411_SNP [dm6]	G	A	2.913e^-4	0.928	UPSTREAM Shawl INTERGENIC
2L	3053084	2L_3053084_SNP [dm3] 2L_3053084_SNP [dm6]	C	T	2.915e^-4	0.928	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15394562	2R_15394562_SNP [dm3] 2R_19507057_SNP [dm6]	C	T	2.918e^-4	0.928	UPSTREAM tRNA:H:56E INTERGENIC
3L	15449617	3L_15449617_SNP [dm3] 3L_15456517_SNP [dm6]	T	A	2.929e^-4	0.928	UPSTREAM CR45395 INTERGENIC
3R	10946962	3R_10946962_SNP [dm3] 3R_15121240_SNP [dm6]	G	A	2.940e^-4	0.928	INTRON CG42788
X	12345017	X_12345017_SNP [dm3] X_12450984_SNP [dm6]	C	A	2.948e^-4	0.928	INTRON Pkcdelta
3L	8595364	3L_8595364_SNP [dm3] 3L_8602264_SNP [dm6]	G	A	2.957e^-4	0.928	SYNONYMOUS_CODING RpL14 DOWNSTREAM CG5989 & 2 others	TF binding site mE1_TFBS_sens
X	4591522	X_4591522_SNP [dm3] X_4697489_SNP [dm6]	C	T	2.970e^-4	0.928	INTRON ctp
X	21256573	X_21256573_SNP [dm3] X_21385546_SNP [dm6]	T	C	2.975e^-4	0.928	UTR_3_PRIME Hlc DOWNSTREAM Hlc & 1 other
3R	14875492	3R_14875492_SNP [dm3] 3R_19049770_SNP [dm6]	G	T	2.985e^-4	0.928	INTRON cdi	TF binding site mE1_TFBS_sens
2R	16959324	2R_16959324_SNP [dm3] 2R_21071819_SNP [dm6]	C	T	2.988e^-4	0.928	INTRON CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
2R	7599541	2R_7599541_SNP [dm3] 2R_11712036_SNP [dm6]	A	G	2.992e^-4	0.928	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9482143	2R_9482143_SNP [dm3] 2R_13594638_SNP [dm6]	C	T	3.013e^-4	0.928	SYNONYMOUS_CODING CG6197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	13493188	2L_13493188_SNP [dm3] 2L_13493188_SNP [dm6]	C	A	3.033e^-4	0.928	INTRON CG42784
2L	2174809	2L_2174809_SNP [dm3] 2L_2174809_SNP [dm6]	C	G	3.033e^-4	0.928	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11733841	2L_11733841_SNP [dm3] 2L_11733841_SNP [dm6]	T	C	3.034e^-4	0.928	INTERGENIC
2R	7599542	2R_7599542_SNP [dm3] 2R_11712037_SNP [dm6]	G	A	3.035e^-4	0.928	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3416180	2L_3416180_SNP [dm3] 2L_3416180_SNP [dm6]	G	T	3.041e^-4	0.928	UPSTREAM CG31952 INTRON pgant2
3R	2703107	3R_2703107_SNP [dm3] 3R_6877385_SNP [dm6]	C	G	3.044e^-4	0.928	DOWNSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	19211937	3R_19211937_DEL [dm3] 3R_23386215_DEL [dm6]	TT	T	3.046e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5949676	2R_5949676_SNP [dm3] 2R_10062171_SNP [dm6]	G	A	3.047e^-4	0.928	NON_SYNONYMOUS_CODING magu
X	12817907	X_12817907_SNP [dm3] X_12923874_SNP [dm6]	T	G	3.068e^-4	0.928	INTRON fne
3L	7068892	3L_7068892_SNP [dm3] 3L_7075792_SNP [dm6]	C	T	3.075e^-4	0.928	UPSTREAM CG34030 INTRON CG8641
3R	22532527	3R_22532527_SNP [dm3] 3R_26706805_SNP [dm6]	G	A	3.077e^-4	0.928	INTRON amon
3R	16966528	3R_16966528_SNP [dm3] 3R_21140806_SNP [dm6]	C	T	3.078e^-4	0.928	UTR_5_PRIME SNF4Agamma DOWNSTREAM meigo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15252840	2R_15252840_SNP [dm3] 2R_19365335_SNP [dm6]	T	C	3.094e^-4	0.928	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12667030	X_12667030_SNP [dm3] X_12772997_SNP [dm6]	A	C	3.097e^-4	0.928	UTR_3_PRIME CG32647 DOWNSTREAM CG32647 & 1 other
3R	25846990	3R_25846990_SNP [dm3] 3R_30021268_SNP [dm6]	T	A	3.108e^-4	0.928	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2R	9350357	2R_9350357_SNP [dm3] 2R_13462852_SNP [dm6]	C	T	3.113e^-4	0.928	INTRON arr
2R	3521582	2R_3521582_SNP [dm3] 2R_7634077_SNP [dm6]	C	T	3.114e^-4	0.928	DOWNSTREAM CG43341 INTRON CG43340 EXON CR45131
X	2613686	X_2613686_SNP [dm3] X_2719653_SNP [dm6]	G	C	3.119e^-4	0.928	NON_SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4197946	2R_4197946_SNP [dm3] 2R_8310441_SNP [dm6]	T	A	3.124e^-4	0.928	DOWNSTREAM CR44449 & 1 other INTERGENIC
3L	22347439	3L_22347439_SNP [dm3] 3L_22354339_SNP [dm6]	A	G	3.126e^-4	0.928	INTRON Ten-m
3L	8920934	3L_8920934_SNP [dm3] 3L_8927834_SNP [dm6]	T	A	3.137e^-4	0.928	INTRON Tsp66E
X	14232928	X_14232928_SNP [dm3] X_14338895_SNP [dm6]	A	G	3.143e^-4	0.928	INTRON dpr8
3L	4079562	3L_4079562_SNP [dm3] 3L_4079562_SNP [dm6]	G	A	3.164e^-4	0.928	INTRON Gad1
3L	2108087	3L_2108087_SNP [dm3] 3L_2108087_SNP [dm6]	T	C	3.184e^-4	0.928	INTRON sls	TF binding site mE1_TFBS_Trl
3R	19687394	3R_19687394_SNP [dm3] 3R_23861672_SNP [dm6]	C	T	3.192e^-4	0.928	SYNONYMOUS_CODING Pli
3L	15449625	3L_15449625_SNP [dm3] 3L_15456525_SNP [dm6]	T	G	3.192e^-4	0.928	UPSTREAM CR45395 INTERGENIC
3R	17743724	3R_17743724_SNP [dm3] 3R_21918002_SNP [dm6]	C	A	3.199e^-4	0.928	INTERGENIC
X	4227611	X_4227611_INS [dm3] X_4333578_INS [dm6]	A	ATGTA	3.205e^-4	0.928	INTRON norpA
3L	11793493	3L_11793493_INS [dm3] 3L_11800393_INS [dm6]	T	TTAAAAA	3.221e^-4	0.928	INTRON CG10361
3L	11793502	3L_11793502_SNP [dm3] 3L_11800402_SNP [dm6]	A	T	3.221e^-4	0.928	INTRON CG10361
3L	11793531	3L_11793531_SNP [dm3] 3L_11800431_SNP [dm6]	A	G	3.221e^-4	0.928	INTRON CG10361
2R	11128601	2R_11128601_SNP [dm3] 2R_15241096_SNP [dm6]	G	A	3.221e^-4	0.928	INTRON Fs
2R	17714850	2R_17714850_SNP [dm3] 2R_21827345_SNP [dm6]	G	A	3.228e^-4	0.928	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
3R	4688650	3R_4688650_SNP [dm3] 3R_8862928_SNP [dm6]	C	T	3.231e^-4	0.928	UTR_5_PRIME pyd UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	8595157	3L_8595157_SNP [dm3] 3L_8602057_SNP [dm6]	A	T	3.237e^-4	0.928	DOWNSTREAM CG5989 & 2 others INTRON RpL14	TF binding site mE1_TFBS_sens
3R	2728885	3R_2728885_SNP [dm3] 3R_6903163_SNP [dm6]	C	T	3.239e^-4	0.928	DOWNSTREAM CR43252 INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23890820	3R_23890820_SNP [dm3] 3R_28065098_SNP [dm6]	C	T	3.240e^-4	0.928	INTRON CG34362
2R	16736702	2R_16736702_SNP [dm3] 2R_20849197_SNP [dm6]	G	C	3.247e^-4	0.928	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993
X	21978605	X_21978605_SNP [dm3] X_22576769_SNP [dm6]	A	C	3.268e^-4	0.928	INTERGENIC	transposable element FlyBase
3L	9319106	3L_9319106_SNP [dm3] 3L_9326006_SNP [dm6]	T	G	3.292e^-4	0.928	INTERGENIC
3L	8900580	3L_8900580_INS [dm3] 3L_8907480_INS [dm6]	T	TCATT	3.298e^-4	0.928	INTRON mfr
X	18415454	X_18415454_SNP [dm3] X_18521421_SNP [dm6]	T	C	3.305e^-4	0.928	SYNONYMOUS_CODING CG6481 DOWNSTREAM Aats-his INTRON Bx	TF binding site mE1_TFBS_sens
2L	12479516	2L_12479516_INS [dm3] 2L_12479516_INS [dm6]	T	TAT	3.305e^-4	0.928	INTRON bun	TF binding site BDTNP1_TFBS_twi
3R	22960308	3R_22960308_INS [dm3] 3R_27134586_INS [dm6]	A	ATTGTA	3.349e^-4	0.928	INTRON CG6051
3L	19206742	3L_19206742_SNP [dm3] 3L_19213642_SNP [dm6]	A	G	3.349e^-4	0.928	INTRON fz2
3L	12140577	3L_12140577_SNP [dm3] 3L_12147477_SNP [dm6]	A	T	3.370e^-4	0.928	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	12140688	3L_12140688_SNP [dm3] 3L_12147588_SNP [dm6]	G	A	3.370e^-4	0.928	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	9196152	2R_9196152_DEL [dm3] 2R_13308647_DEL [dm6]	TGCCAAA	T	3.373e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	423734	3L_423734_SNP [dm3] 3L_423734_SNP [dm6]	C	T	3.408e^-4	0.928	INTERGENIC
3R	24045683	3R_24045683_SNP [dm3] 3R_28219961_SNP [dm6]	G	A	3.411e^-4	0.928	INTRON CG34354
3R	27838379	3R_27838379_SNP [dm3] 3R_32012657_SNP [dm6]	A	T	3.414e^-4	0.928	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18822243	3R_18822243_SNP [dm3] 3R_22996521_SNP [dm6]	T	C	3.417e^-4	0.928	INTRON Nha2 EXON CR43454	TF binding site BDTNP1_TFBS_sna
2L	18227638	2L_18227638_SNP [dm3] 2L_18227638_SNP [dm6]	A	G	3.423e^-4	0.928	INTRON CG42750
2L	11733438	2L_11733438_SNP [dm3] 2L_11733438_SNP [dm6]	G	A	3.426e^-4	0.928	INTERGENIC
3L	5466607	3L_5466607_SNP [dm3] 3L_5473507_SNP [dm6]	T	A	3.427e^-4	0.928	INTERGENIC
X	4227649	X_4227649_SNP [dm3] X_4333616_SNP [dm6]	T	G	3.430e^-4	0.928	INTRON norpA
X	22077594	X_22077594_SNP [dm3] X_22675758_SNP [dm6]	T	A	3.440e^-4	0.928	INTRON CR44997
2L	6535816	2L_6535816_SNP [dm3] 2L_6535816_SNP [dm6]	A	T	3.441e^-4	0.928	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	6537309	2L_6537309_SNP [dm3] 2L_6537309_SNP [dm6]	C	G	3.441e^-4	0.928	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3327672	3L_3327672_DEL [dm3] 3L_3327672_DEL [dm6]	TTCTCTGT	T	3.468e^-4	0.928	INTRON CG11526 & 1 other
2L	6560413	2L_6560413_SNP [dm3] 2L_6560413_SNP [dm6]	G	T	3.469e^-4	0.928	SYNONYMOUS_CODING CG9596 DOWNSTREAM CG11043	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5258662	3L_5258662_SNP [dm3] 3L_5265562_SNP [dm6]	G	C	3.471e^-4	0.928	INTRON shep
3L	4103540	3L_4103540_SNP [dm3] 3L_4103540_SNP [dm6]	T	A	3.478e^-4	0.928	UPSTREAM Fit1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19530455	2R_19530455_SNP [dm3] 2R_23642932_SNP [dm6]	T	C	3.479e^-4	0.928	SYNONYMOUS_CODING retn INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	15171295	2R_15171295_SNP [dm3] 2R_19283790_SNP [dm6]	T	C	3.487e^-4	0.928	START_GAINED CG11906 UTR_5_PRIME CG11906 DOWNSTREAM CG10476	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2308786	2L_2308786_SNP [dm3] 2L_2308786_SNP [dm6]	C	A	3.491e^-4	0.928	UTR_3_PRIME CG16995 & 1 other DOWNSTREAM CG9967
3L	2856220	3L_2856220_SNP [dm3] 3L_2856220_SNP [dm6]	C	G	3.492e^-4	0.928	INTRON CG43444
2L	8135956	2L_8135956_SNP [dm3] 2L_8135956_SNP [dm6]	G	A	3.493e^-4	0.928	SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10855187	2R_10855187_SNP [dm3] 2R_14967682_SNP [dm6]	T	C	3.524e^-4	0.928	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17189185	3R_17189185_SNP [dm3] 3R_21363463_SNP [dm6]	C	T	3.530e^-4	0.928	NON_SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_3_PRIME pre-mod_mdg4_-C & 1 other DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	17573766	3R_17573766_SNP [dm3] 3R_21748044_SNP [dm6]	C	T	3.539e^-4	0.928	SYNONYMOUS_CODING CG31343	TF binding site mE1_TFBS_cad
2R	6860559	2R_6860559_SNP [dm3] 2R_10973054_SNP [dm6]	G	T	3.540e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19199270	3R_19199270_SNP [dm3] 3R_23373548_SNP [dm6]	T	C	3.542e^-4	0.928	UTR_3_PRIME CG42827 UPSTREAM CR44322 & 1 other
3R	18897045	3R_18897045_SNP [dm3] 3R_23071323_SNP [dm6]	C	T	3.544e^-4	0.928	UTR_3_PRIME CG13830
3R	22829468	3R_22829468_SNP [dm3] 3R_27003746_SNP [dm6]	A	C	3.547e^-4	0.928	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8900766	3L_8900766_SNP [dm3] 3L_8907666_SNP [dm6]	T	A	3.555e^-4	0.928	SPLICE_SITE_REGION mfr INTRON mfr
2L	18661576	2L_18661576_SNP [dm3] 2L_18661576_SNP [dm6]	G	C	3.555e^-4	0.928	UTR_3_PRIME MESR3
3R	9095778	3R_9095778_SNP [dm3] 3R_13270056_SNP [dm6]	T	A	3.560e^-4	0.928	DOWNSTREAM Su_var_3-7 INTRON CG8449
3L	8917773	3L_8917773_SNP [dm3] 3L_8924673_SNP [dm6]	C	T	3.561e^-4	0.928	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3R	27832478	3R_27832478_SNP [dm3] 3R_32006756_SNP [dm6]	A	G	3.566e^-4	0.928	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8393437	3R_8393437_SNP [dm3] 3R_12567715_SNP [dm6]	G	A	3.577e^-4	0.928	INTRON Octbeta2R
3R	10968849	3R_10968849_SNP [dm3] 3R_15143127_SNP [dm6]	T	C	3.582e^-4	0.928	SYNONYMOUS_CODING GlyS
3R	2689201	3R_2689201_SNP [dm3] 3R_6863479_SNP [dm6]	C	A	3.591e^-4	0.928	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16714982	2L_16714982_INS [dm3] 2L_16714982_INS [dm6]	T	TT	3.592e^-4	0.928	UPSTREAM Cyt-c-d INTRON CG31808
2R	18739780	2R_18739780_SNP [dm3] 2R_22852257_SNP [dm6]	T	A	3.596e^-4	0.928	SYNONYMOUS_CODING CG13531
X	18305904	X_18305904_SNP [dm3] X_18411871_SNP [dm6]	C	G	3.608e^-4	0.928	INTERGENIC
2R	12009327	2R_12009327_SNP [dm3] 2R_16121822_SNP [dm6]	G	A	3.614e^-4	0.928	NON_SYNONYMOUS_CODING Jhe
2R	17765152	2R_17765152_SNP [dm3] 2R_21877647_SNP [dm6]	A	C	3.626e^-4	0.928	INTRON Fili	TF binding site mE1_TFBS_cnc
2L	16487651	2L_16487651_SNP [dm3] 2L_16487651_SNP [dm6]	G	A	3.628e^-4	0.928	UPSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_HSA
2L	16487762	2L_16487762_SNP [dm3] 2L_16487762_SNP [dm6]	C	T	3.628e^-4	0.928	UPSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24028899	3R_24028899_DEL [dm3] 3R_28203177_DEL [dm6]	GAGAAA	G	3.629e^-4	0.928	INTRON CG34354
3R	24028905	3R_24028905_DEL [dm3] 3R_28203183_DEL [dm6]	CGTTGAA	C	3.629e^-4	0.928	INTRON CG34354
3R	24028913	3R_24028913_DEL [dm3] 3R_28203191_DEL [dm6]	TC	T	3.629e^-4	0.928	INTRON CG34354
3R	23055311	3R_23055311_SNP [dm3] 3R_27229589_SNP [dm6]	A	G	3.640e^-4	0.928	UTR_3_PRIME CG31064 UPSTREAM CG42814	TF binding site mE1_TFBS_chinmo
3L	6488479	3L_6488479_SNP [dm3] 3L_6495379_SNP [dm6]	C	T	3.643e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	6541748	2L_6541748_SNP [dm3] 2L_6541748_SNP [dm6]	C	A	3.648e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	6541751	2L_6541751_SNP [dm3] 2L_6541751_SNP [dm6]	T	A	3.648e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	15252565	2R_15252565_SNP [dm3] 2R_19365060_SNP [dm6]	T	C	3.659e^-4	0.928	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8606593	3L_8606593_SNP [dm3] 3L_8613493_SNP [dm6]	T	G	3.663e^-4	0.928	INTRON CG6282
3R	19079356	3R_19079356_SNP [dm3] 3R_23253634_SNP [dm6]	A	G	3.673e^-4	0.928	SYNONYMOUS_CODING EloA
3R	19079368	3R_19079368_SNP [dm3] 3R_23253646_SNP [dm6]	C	A	3.673e^-4	0.928	SYNONYMOUS_CODING EloA
2L	5235937	2L_5235937_SNP [dm3] 2L_5235937_SNP [dm6]	T	C	3.674e^-4	0.928	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17250654	3R_17250654_INS [dm3] 3R_21424932_INS [dm6]	A	AA	3.674e^-4	0.928	INTRON lbl
2R	18303887	2R_18303887_SNP [dm3] 2R_22416382_SNP [dm6]	A	C	3.680e^-4	0.928	UPSTREAM qkr58E-1 INTRON qkr58E-2 EXON CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2420707	2L_2420707_SNP [dm3] 2L_2420707_SNP [dm6]	C	T	3.689e^-4	0.928	UPSTREAM CG34447 & 1 other INTERGENIC
2L	2420759	2L_2420759_SNP [dm3] 2L_2420759_SNP [dm6]	T	C	3.689e^-4	0.928	UPSTREAM CG34447 & 1 other INTERGENIC
3R	17250631	3R_17250631_SNP [dm3] 3R_21424909_SNP [dm6]	A	G	3.691e^-4	0.928	INTRON lbl	regulatory region REDfly_CRMs
2R	11489059	2R_11489059_SNP [dm3] 2R_15601554_SNP [dm6]	A	T	3.700e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	9158518	3R_9158518_SNP [dm3] 3R_13332796_SNP [dm6]	A	T	3.709e^-4	0.928	UTR_5_PRIME PK2-R2
X	18986202	X_18986202_DEL [dm3] X_19092169_DEL [dm6]	TC	T	3.713e^-4	0.928	INTERGENIC
X	18986205	X_18986205_SNP [dm3] X_19092172_SNP [dm6]	T	G	3.713e^-4	0.928	INTERGENIC
2L	6541770	2L_6541770_SNP [dm3] 2L_6541770_SNP [dm6]	T	G	3.719e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
X	4987141	X_4987141_SNP [dm3] X_5093108_SNP [dm6]	A	C	3.719e^-4	0.928	INTRON rg & 1 other
3R	16907811	3R_16907811_SNP [dm3] 3R_21082089_SNP [dm6]	C	T	3.726e^-4	0.928	DOWNSTREAM RhoGAP93B INTERGENIC
2L	4390705	2L_4390705_SNP [dm3] 2L_4390705_SNP [dm6]	G	A	3.729e^-4	0.928	SPLICE_SITE_REGION Tps1 SYNONYMOUS_CODING Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2174749	2L_2174749_SNP [dm3] 2L_2174749_SNP [dm6]	T	G	3.739e^-4	0.928	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16099188	2R_16099188_SNP [dm3] 2R_20211683_SNP [dm6]	A	T	3.740e^-4	0.928	UTR_3_PRIME CG16894
X	21256702	X_21256702_SNP [dm3] X_21385675_SNP [dm6]	C	A	3.741e^-4	0.928	UTR_3_PRIME Hlc DOWNSTREAM slgA
3R	24045687	3R_24045687_SNP [dm3] 3R_28219965_SNP [dm6]	G	A	3.745e^-4	0.928	INTRON CG34354
3R	16665001	3R_16665001_SNP [dm3] 3R_20839279_SNP [dm6]	T	A	3.747e^-4	0.928	INTRON Synd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9022644	X_9022644_DEL [dm3] X_9128611_DEL [dm6]	TT	A	3.755e^-4	0.928	INTRON fend	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14517038	3R_14517038_SNP [dm3] 3R_18691316_SNP [dm6]	A	C	3.764e^-4	0.928	INTRON Muc91C
3R	14517044	3R_14517044_SNP [dm3] 3R_18691322_SNP [dm6]	A	T	3.764e^-4	0.928	INTRON Muc91C
3L	5558415	3L_5558415_SNP [dm3] 3L_5565315_SNP [dm6]	G	A	3.767e^-4	0.928	UTR_5_PRIME bc10 DOWNSTREAM Sras	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8047474	2L_8047474_SNP [dm3] 2L_8047474_SNP [dm6]	A	G	3.768e^-4	0.928	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14086575	X_14086575_SNP [dm3] X_14192542_SNP [dm6]	C	G	3.770e^-4	0.928	UPSTREAM CG13403 & 1 other INTERGENIC
3L	1625726	3L_1625726_SNP [dm3] 3L_1625726_SNP [dm6]	T	A	3.779e^-4	0.928	UPSTREAM GC DOWNSTREAM CG13928 INTRON GC	TF binding site mE1_TFBS_cad
2R	6824963	2R_6824963_SNP [dm3] 2R_10937458_SNP [dm6]	T	A	3.847e^-4	0.928	DOWNSTREAM Spn47C INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18504727	2L_18504727_SNP [dm3] 2L_18504727_SNP [dm6]	A	G	3.849e^-4	0.928	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11128680	2R_11128680_INS [dm3] 2R_15241175_INS [dm6]	T	TAAGCT	3.854e^-4	0.928	INTRON Fs
3R	25834023	3R_25834023_SNP [dm3] 3R_30008301_SNP [dm6]	T	C	3.863e^-4	0.928	INTRON Nlp & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16942035	2L_16942035_SNP [dm3] 2L_16942035_SNP [dm6]	G	A	3.863e^-4	0.928	INTERGENIC
3L	6488561	3L_6488561_SNP [dm3] 3L_6495461_SNP [dm6]	C	G	3.876e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	7517139	3R_7517139_SNP [dm3] 3R_11691417_SNP [dm6]	G	T	3.896e^-4	0.928	NON_SYNONYMOUS_CODING CG18765	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15742916	3L_15742916_SNP [dm3] 3L_15749816_SNP [dm6]	T	C	3.896e^-4	0.928	INTERGENIC
3L	11793532	3L_11793532_SNP [dm3] 3L_11800432_SNP [dm6]	A	C	3.899e^-4	0.928	INTRON CG10361
2L	5617730	2L_5617730_SNP [dm3] 2L_5617730_SNP [dm6]	G	T	3.907e^-4	0.928	UTR_5_PRIME CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15252134	2R_15252134_SNP [dm3] 2R_19364629_SNP [dm6]	A	G	3.910e^-4	0.928	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9948666	3L_9948666_SNP [dm3] 3L_9955566_SNP [dm6]	A	G	3.914e^-4	0.928	INTRON CG34356
3L	21891410	3L_21891410_SNP [dm3] 3L_21898310_SNP [dm6]	T	G	3.915e^-4	0.928	INTRON mub
3R	13624986	3R_13624986_SNP [dm3] 3R_17799264_SNP [dm6]	A	G	3.925e^-4	0.928	UPSTREAM CG7379 INTRON CG17803
3R	9905702	3R_9905702_SNP [dm3] 3R_14079980_SNP [dm6]	T	C	3.926e^-4	0.928	INTRON foxo
X	2613913	X_2613913_SNP [dm3] X_2719880_SNP [dm6]	C	T	3.929e^-4	0.928	SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16724187	3R_16724187_SNP [dm3] 3R_20898465_SNP [dm6]	A	G	3.930e^-4	0.928	INTERGENIC
3R	5711879	3R_5711879_SNP [dm3] 3R_9886157_SNP [dm6]	A	G	3.932e^-4	0.928	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14032794	2R_14032794_SNP [dm3] 2R_18145289_SNP [dm6]	A	G	3.933e^-4	0.928	INTRON pAbp	TF binding site mE1_TFBS_cad
2L	10902932	2L_10902932_SNP [dm3] 2L_10902932_SNP [dm6]	T	C	3.942e^-4	0.928	DOWNSTREAM CR45724 INTERGENIC
2R	4889279	2R_4889279_SNP [dm3] 2R_9001774_SNP [dm6]	C	A	3.949e^-4	0.928	INTRON Np
X	21256572	X_21256572_SNP [dm3] X_21385545_SNP [dm6]	A	G	3.953e^-4	0.928	UTR_3_PRIME Hlc DOWNSTREAM Hlc & 1 other
2R	19530359	2R_19530359_SNP [dm3] 2R_23642836_SNP [dm6]	C	T	3.963e^-4	0.928	SYNONYMOUS_CODING retn INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	27207006	3R_27207006_SNP [dm3] 3R_31381284_SNP [dm6]	C	T	3.970e^-4	0.928	UPSTREAM CG1607 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17527059	2L_17527059_SNP [dm3] 2L_17527059_SNP [dm6]	A	G	3.985e^-4	0.928	SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12541399	2R_12541399_SNP [dm3] 2R_16653894_SNP [dm6]	T	G	3.992e^-4	0.928	NON_SYNONYMOUS_CODING Nach
3R	16976241	3R_16976241_INS [dm3] 3R_21150519_INS [dm6]	T	TTACTATG	3.993e^-4	0.928	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8917774	3L_8917774_SNP [dm3] 3L_8924674_SNP [dm6]	A	T	3.997e^-4	0.928	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
2R	20301154	2R_20301154_SNP [dm3] 2R_24413631_SNP [dm6]	C	T	4.003e^-4	0.928	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14224085	2R_14224085_SNP [dm3] 2R_18336580_SNP [dm6]	G	C	4.013e^-4	0.928	INTRON sbb
X	22347168	X_22347168_SNP [dm3] X_22945332_SNP [dm6]	G	T	4.016e^-4	0.928	UTR_5_PRIME CG41106
3L	15251454	3L_15251454_SNP [dm3] 3L_15258354_SNP [dm6]	C	G	4.019e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16982042	2L_16982042_SNP [dm3] 2L_16982042_SNP [dm6]	T	A	4.021e^-4	0.928	UPSTREAM CR44408 INTRON beat-IIIb & 1 other
3R	14084230	3R_14084230_SNP [dm3] 3R_18258508_SNP [dm6]	C	T	4.022e^-4	0.928	DOWNSTREAM moi & 1 other INTERGENIC
2L	8967673	2L_8967673_SNP [dm3] 2L_8967673_SNP [dm6]	C	T	4.023e^-4	0.928	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2L	8967678	2L_8967678_SNP [dm3] 2L_8967678_SNP [dm6]	A	G	4.023e^-4	0.928	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2L	8967688	2L_8967688_SNP [dm3] 2L_8967688_SNP [dm6]	A	C	4.023e^-4	0.928	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
3R	13847820	3R_13847820_SNP [dm3] 3R_18022098_SNP [dm6]	T	C	4.030e^-4	0.928	SPLICE_SITE_REGION CG7785 DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6524618	3R_6524618_SNP [dm3] 3R_10698896_SNP [dm6]	C	T	4.032e^-4	0.928	SYNONYMOUS_CODING CG14683 UPSTREAM pug INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6522116	3R_6522116_DEL [dm3] 3R_10696394_DEL [dm6]	TTAGT	A	4.033e^-4	0.928	UPSTREAM pug & 1 other DOWNSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20613390	3R_20613390_SNP [dm3] 3R_24787668_SNP [dm6]	A	T	4.033e^-4	0.928	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC
2L	18227649	2L_18227649_SNP [dm3] 2L_18227649_SNP [dm6]	A	G	4.037e^-4	0.928	INTRON CG42750
3R	19752396	3R_19752396_SNP [dm3] 3R_23926674_SNP [dm6]	G	A	4.049e^-4	0.928	SYNONYMOUS_CODING CG13601 DOWNSTREAM Ndc1	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1800694	3L_1800694_SNP [dm3] 3L_1800694_SNP [dm6]	A	T	4.051e^-4	0.928	NON_SYNONYMOUS_CODING Patj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9189946	3R_9189946_SNP [dm3] 3R_13364224_SNP [dm6]	A	T	4.051e^-4	0.928	UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12154991	X_12154991_SNP [dm3] X_12260958_SNP [dm6]	C	T	4.051e^-4	0.928	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6932593	X_6932593_SNP [dm3] X_7038560_SNP [dm6]	G	C	4.051e^-4	0.928	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19921574	2R_19921574_SNP [dm3] 2R_24034051_SNP [dm6]	A	G	4.059e^-4	0.928	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	4986587	X_4986587_SNP [dm3] X_5092554_SNP [dm6]	A	G	4.075e^-4	0.928	INTRON rg & 1 other
X	4259339	X_4259339_SNP [dm3] X_4365306_SNP [dm6]	C	T	4.079e^-4	0.928	UTR_3_PRIME norpA DOWNSTREAM mir-982 & 2 others
2R	9816890	2R_9816890_SNP [dm3] 2R_13929385_SNP [dm6]	C	T	4.087e^-4	0.928	INTRON shot
X	13701278	X_13701278_SNP [dm3] X_13807245_SNP [dm6]	C	T	4.100e^-4	0.928	UTR_3_PRIME inaE INTRON inaE
X	6870314	X_6870314_SNP [dm3] X_6976281_SNP [dm6]	T	A	4.105e^-4	0.928	INTRON ogre
3R	9905679	3R_9905679_SNP [dm3] 3R_14079957_SNP [dm6]	C	T	4.113e^-4	0.928	INTRON foxo
3L	5438456	3L_5438456_SNP [dm3] 3L_5445356_SNP [dm6]	G	C	4.119e^-4	0.928	INTERGENIC
3L	12029589	3L_12029589_SNP [dm3] 3L_12036489_SNP [dm6]	G	T	4.125e^-4	0.928	INTRON rols
3R	18402222	3R_18402222_SNP [dm3] 3R_22576500_SNP [dm6]	A	T	4.129e^-4	0.928	INTRON CG33110
X	12527603	X_12527603_DEL [dm3] X_12633570_DEL [dm6]	GCAGCAGCAG	G	4.132e^-4	0.928	UTR_5_PRIME Tomosyn UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7610886	2R_7610886_SNP [dm3] 2R_11723381_SNP [dm6]	A	G	4.138e^-4	0.928	INTRON pyr
X	14012572	X_14012572_SNP [dm3] X_14118539_SNP [dm6]	C	T	4.159e^-4	0.928	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18319683	3L_18319683_INS [dm3] 3L_18326583_INS [dm6]	A	AACATT	4.161e^-4	0.928	INTERGENIC
2L	16740557	2L_16740557_INS [dm3] 2L_16740557_INS [dm6]	G	GCT	4.164e^-4	0.928	INTRON ChLD3
3L	2878159	3L_2878159_SNP [dm3] 3L_2878159_SNP [dm6]	A	G	4.166e^-4	0.928	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2L	3984217	2L_3984217_SNP [dm3] 2L_3984217_SNP [dm6]	T	C	4.171e^-4	0.928	INTRON fred
2L	10903133	2L_10903133_SNP [dm3] 2L_10903133_SNP [dm6]	G	C	4.180e^-4	0.928	DOWNSTREAM CR45724 INTERGENIC
3L	10010835	3L_10010835_SNP [dm3] 3L_10017735_SNP [dm6]	T	C	4.189e^-4	0.928	INTRON dpr6
X	15810773	X_15810773_SNP [dm3] X_15916740_SNP [dm6]	A	G	4.191e^-4	0.928	INTRON CG8909	TF binding site BDTNP1_TFBS_twi
2L	11050830	2L_11050830_INS [dm3] 2L_11050830_INS [dm6]	T	TAT	4.192e^-4	0.928	INTRON Samuel
3R	17574433	3R_17574433_SNP [dm3] 3R_21748711_SNP [dm6]	G	A	4.199e^-4	0.928	SYNONYMOUS_CODING CG31343
3L	6026471	3L_6026471_SNP [dm3] 3L_6033371_SNP [dm6]	C	T	4.201e^-4	0.928	UTR_3_PRIME CG10477
2R	5948394	2R_5948394_SNP [dm3] 2R_10060889_SNP [dm6]	C	T	4.213e^-4	0.928	SYNONYMOUS_CODING magu
2R	9216682	2R_9216682_SNP [dm3] 2R_13329177_SNP [dm6]	T	C	4.225e^-4	0.928	DOWNSTREAM CR44206 & 1 other INTERGENIC
2R	16208725	2R_16208725_SNP [dm3] 2R_20321220_SNP [dm6]	G	A	4.242e^-4	0.928	INTRON CG8920
2L	3831138	2L_3831138_SNP [dm3] 2L_3831138_SNP [dm6]	T	A	4.246e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11743050	2L_11743050_SNP [dm3] 2L_11743050_SNP [dm6]	C	G	4.260e^-4	0.928	SYNONYMOUS_CODING Vha100-5 DOWNSTREAM CR44144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1576866	X_1576866_SNP [dm3] X_1682833_SNP [dm6]	G	T	4.269e^-4	0.928	UTR_5_PRIME CG14797 UPSTREAM CG14797 INTRON CG32809	TF binding site mE1_TFBS_chinmo
3R	18592470	3R_18592470_DEL [dm3] 3R_22766748_DEL [dm6]	TAT	T	4.275e^-4	0.928	UTR_3_PRIME CG13841 UPSTREAM CG4721 INTRON Usp12-46 & 1 other
3L	14074793	3L_14074793_SNP [dm3] 3L_14081693_SNP [dm6]	T	C	4.275e^-4	0.928	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3R	26549449	3R_26549449_SNP [dm3] 3R_30723727_SNP [dm6]	G	A	4.300e^-4	0.928	INTERGENIC
3R	20606898	3R_20606898_SNP [dm3] 3R_24781176_SNP [dm6]	T	C	4.301e^-4	0.928	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	16929627	3L_16929627_SNP [dm3] 3L_16936527_SNP [dm6]	G	A	4.302e^-4	0.928	UPSTREAM CG11905 INTERGENIC
3L	17061827	3L_17061827_SNP [dm3] 3L_17068727_SNP [dm6]	G	T	4.309e^-4	0.928	INTRON Rbp6
3R	9221834	3R_9221834_SNP [dm3] 3R_13396112_SNP [dm6]	G	T	4.310e^-4	0.928	UPSTREAM CCHa2 DOWNSTREAM CG14374 INTERGENIC
3L	10719239	3L_10719239_SNP [dm3] 3L_10726139_SNP [dm6]	G	T	4.311e^-4	0.928	INTERGENIC
3L	6488553	3L_6488553_SNP [dm3] 3L_6495453_SNP [dm6]	A	C	4.312e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	6488556	3L_6488556_SNP [dm3] 3L_6495456_SNP [dm6]	T	G	4.312e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	6488591	3L_6488591_SNP [dm3] 3L_6495491_SNP [dm6]	G	A	4.312e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
X	8377784	X_8377784_SNP [dm3] X_8483751_SNP [dm6]	T	A	4.314e^-4	0.928	START_GAINED CG33223 UTR_5_PRIME CG33223 UPSTREAM CR43834 DOWNSTREAM Cp38
3L	5957148	3L_5957148_SNP [dm3] 3L_5964048_SNP [dm6]	T	C	4.319e^-4	0.928	INTERGENIC
2L	9112703	2L_9112703_SNP [dm3] 2L_9112703_SNP [dm6]	T	A	4.323e^-4	0.928	SYNONYMOUS_CODING Or30a
3R	23882501	3R_23882501_SNP [dm3] 3R_28056779_SNP [dm6]	A	G	4.334e^-4	0.928	INTRON CG34362
X	6478309	X_6478309_SNP [dm3] X_6584276_SNP [dm6]	A	G	4.336e^-4	0.928	UTR_3_PRIME CG34417 INTRON CG34417
3L	5559854	3L_5559854_SNP [dm3] 3L_5566754_SNP [dm6]	A	G	4.341e^-4	0.928	UTR_3_PRIME bc10 DOWNSTREAM Msr-110
2L	6535592	2L_6535592_SNP [dm3] 2L_6535592_SNP [dm6]	C	T	4.344e^-4	0.928	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	12656799	3L_12656799_SNP [dm3] 3L_12663699_SNP [dm6]	T	G	4.359e^-4	0.928	INTERGENIC
3R	15099322	3R_15099322_SNP [dm3] 3R_19273600_SNP [dm6]	C	T	4.364e^-4	0.928	INTERGENIC
2L	16734618	2L_16734618_SNP [dm3] 2L_16734618_SNP [dm6]	T	C	4.367e^-4	0.928	SYNONYMOUS_CODING glu DOWNSTREAM CG17904	TF binding site mE1_TFBS_sens
3R	24027876	3R_24027876_SNP [dm3] 3R_28202154_SNP [dm6]	T	C	4.378e^-4	0.928	INTRON CG34354
3L	4665731	3L_4665731_SNP [dm3] 3L_4665731_SNP [dm6]	A	G	4.383e^-4	0.928	DOWNSTREAM CG32236 INTRON axo
3L	6488571	3L_6488571_SNP [dm3] 3L_6495471_SNP [dm6]	T	A	4.384e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	6488573	3L_6488573_SNP [dm3] 3L_6495473_SNP [dm6]	A	C	4.384e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	9192710	2R_9192710_SNP [dm3] 2R_13305205_SNP [dm6]	G	C	4.392e^-4	0.928	INTERGENIC
X	14232609	X_14232609_SNP [dm3] X_14338576_SNP [dm6]	A	C	4.393e^-4	0.928	INTRON dpr8
3L	10037034	3L_10037034_SNP [dm3] 3L_10043934_SNP [dm6]	G	A	4.396e^-4	0.928	INTRON dpr6	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3462192	X_3462192_SNP [dm3] X_3568159_SNP [dm6]	A	G	4.411e^-4	0.928	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4986515	X_4986515_INS [dm3] X_5092482_INS [dm6]	A	AA	4.415e^-4	0.928	INTRON rg & 1 other
3R	10226440	3R_10226440_SNP [dm3] 3R_14400718_SNP [dm6]	T	G	4.416e^-4	0.928	INTRON cv-c
3L	15709435	3L_15709435_SNP [dm3] 3L_15716335_SNP [dm6]	A	T	4.419e^-4	0.928	UPSTREAM CG42571 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3566560	3L_3566560_SNP [dm3] 3L_3566560_SNP [dm6]	T	C	4.420e^-4	0.928	INTRON Eip63E
2R	19821586	2R_19821586_SNP [dm3] 2R_23934063_SNP [dm6]	T	C	4.423e^-4	0.928	UTR_5_PRIME Ca-P60A UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14084234	3R_14084234_SNP [dm3] 3R_18258512_SNP [dm6]	T	C	4.436e^-4	0.928	DOWNSTREAM moi & 1 other INTERGENIC
2L	3378511	2L_3378511_SNP [dm3] 2L_3378511_SNP [dm6]	T	G	4.439e^-4	0.928	UTR_3_PRIME Ptpa
3R	13760546	3R_13760546_SNP [dm3] 3R_17934824_SNP [dm6]	A	G	4.444e^-4	0.928	INTRON cpo	TF binding site mE1_TFBS_chinmo
2R	19315951	2R_19315951_SNP [dm3] 2R_23428428_SNP [dm6]	T	G	4.447e^-4	0.928	INTRON CG9815
3R	15106618	3R_15106618_SNP [dm3] 3R_19280896_SNP [dm6]	A	G	4.468e^-4	0.928	INTERGENIC
2L	7523808	2L_7523808_SNP [dm3] 2L_7523808_SNP [dm6]	C	G	4.480e^-4	0.928	INTRON RapGAP1
2R	4868539	2R_4868539_SNP [dm3] 2R_8981034_SNP [dm6]	T	G	4.480e^-4	0.928	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17152272	2R_17152272_DEL [dm3] 2R_21264767_DEL [dm6]	AA	A	4.485e^-4	0.928	DOWNSTREAM CG30391 INTRON Rgk3
3L	10432358	3L_10432358_SNP [dm3] 3L_10439258_SNP [dm6]	T	G	4.497e^-4	0.928	INTERGENIC
3L	11353628	3L_11353628_SNP [dm3] 3L_11360528_SNP [dm6]	T	C	4.501e^-4	0.928	INTERGENIC
2R	5909193	2R_5909193_SNP [dm3] 2R_10021688_SNP [dm6]	G	A	4.511e^-4	0.928	INTRON Pka-R2
3R	14448545	3R_14448545_SNP [dm3] 3R_18622823_SNP [dm6]	C	T	4.544e^-4	0.928	INTRON qin	TF binding site mE1_TFBS_inv
3R	19125077	3R_19125077_SNP [dm3] 3R_23299355_SNP [dm6]	G	A	4.547e^-4	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5384272	3L_5384272_SNP [dm3] 3L_5391172_SNP [dm6]	T	C	4.548e^-4	0.928	INTERGENIC
3L	5384281	3L_5384281_SNP [dm3] 3L_5391181_SNP [dm6]	T	C	4.548e^-4	0.928	INTERGENIC
3R	5057505	3R_5057505_SNP [dm3] 3R_9231783_SNP [dm6]	G	A	4.552e^-4	0.928	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	5058044	3R_5058044_SNP [dm3] 3R_9232322_SNP [dm6]	A	G	4.552e^-4	0.928	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_chinmo
3R	5058186	3R_5058186_SNP [dm3] 3R_9232464_SNP [dm6]	A	G	4.552e^-4	0.928	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_chinmo
3R	5059052	3R_5059052_SNP [dm3] 3R_9233330_SNP [dm6]	A	C	4.552e^-4	0.928	INTRON pum	TF binding site BDTNP1_TFBS_dl
2R	5091665	2R_5091665_SNP [dm3] 2R_9204160_SNP [dm6]	C	T	4.571e^-4	0.928	DOWNSTREAM CG8027 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26946286	3R_26946286_SNP [dm3] 3R_31120564_SNP [dm6]	T	C	4.573e^-4	0.928	INTERGENIC
2L	18234302	2L_18234302_SNP [dm3] 2L_18234302_SNP [dm6]	G	A	4.574e^-4	0.928	INTRON CG42750
X	268218	X_268218_DEL [dm3] X_374185_DEL [dm6]	GCCGG	G	4.580e^-4	0.928	INTRON CG32816	regulatory region REDfly_CRMs
2R	16409606	2R_16409606_SNP [dm3] 2R_20522101_SNP [dm6]	A	T	4.587e^-4	0.928	INTERGENIC
2L	12089328	2L_12089328_SNP [dm3] 2L_12089328_SNP [dm6]	A	G	4.589e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21335167	X_21335167_SNP [dm3] X_21464140_SNP [dm6]	A	G	4.596e^-4	0.928	INTERGENIC
X	21431575	X_21431575_DEL [dm3] X_21560548_DEL [dm6]	AA	A	4.597e^-4	0.928	INTERGENIC
2L	2308801	2L_2308801_SNP [dm3] 2L_2308801_SNP [dm6]	A	T	4.599e^-4	0.928	UTR_3_PRIME CG16995 & 1 other
3R	23882774	3R_23882774_SNP [dm3] 3R_28057052_SNP [dm6]	T	C	4.608e^-4	0.928	INTRON CG34362
3L	11161454	3L_11161454_SNP [dm3] 3L_11168354_SNP [dm6]	G	A	4.609e^-4	0.928	SYNONYMOUS_CODING wls	TF binding site BDTNP1_TFBS_twi
2R	17524600	2R_17524600_SNP [dm3] 2R_21637095_SNP [dm6]	C	T	4.613e^-4	0.928	SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13609331	3R_13609331_SNP [dm3] 3R_17783609_SNP [dm6]	A	G	4.622e^-4	0.928	SYNONYMOUS_CODING CG43102 UPSTREAM CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1923260	2R_1923260_SNP [dm3] 2R_6035755_SNP [dm6]	T	C	4.645e^-4	0.928	UTR_5_PRIME SCAP DOWNSTREAM CG14591	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20237096	3L_20237096_SNP [dm3] 3L_20243996_SNP [dm6]	A	G	4.647e^-4	0.928	DOWNSTREAM Clc INTRON CG6951
2L	7798800	2L_7798800_INS [dm3] 2L_7798800_INS [dm6]	A	AT	4.647e^-4	0.928	INTRON Herp
X	13456429	X_13456429_SNP [dm3] X_13562396_SNP [dm6]	T	C	4.658e^-4	0.928	SYNONYMOUS_CODING CG32633	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25463591	3R_25463591_SNP [dm3] 3R_29637869_SNP [dm6]	C	T	4.662e^-4	0.928	INTRON Dop1R2
3R	12183643	3R_12183643_SNP [dm3] 3R_16357921_SNP [dm6]	C	T	4.662e^-4	0.928	UTR_3_PRIME CG17931 UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other
2R	5911711	2R_5911711_SNP [dm3] 2R_10024206_SNP [dm6]	A	T	4.665e^-4	0.928	SPLICE_SITE_REGION Pka-R2 UTR_5_PRIME Pka-R2 INTRON Pka-R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	17045518	2L_17045518_SNP [dm3] 2L_17045518_SNP [dm6]	G	A	4.668e^-4	0.928	INTERGENIC
2R	9493164	2R_9493164_SNP [dm3] 2R_13605659_SNP [dm6]	G	A	4.676e^-4	0.928	UPSTREAM CG34236 INTERGENIC
3L	10432488	3L_10432488_SNP [dm3] 3L_10439388_SNP [dm6]	A	T	4.688e^-4	0.928	INTERGENIC
2R	17064969	2R_17064969_SNP [dm3] 2R_21177464_SNP [dm6]	G	T	4.691e^-4	0.928	DOWNSTREAM CG4286 INTRON Pu
3L	11793526	3L_11793526_SNP [dm3] 3L_11800426_SNP [dm6]	A	G	4.692e^-4	0.928	INTRON CG10361
X	12962343	X_12962343_SNP [dm3] X_13068310_SNP [dm6]	T	A	4.709e^-4	0.928	INTRON rad
2R	9195475	2R_9195475_SNP [dm3] 2R_13307970_SNP [dm6]	T	G	4.711e^-4	0.928	INTERGENIC
2R	13655911	2R_13655911_SNP [dm3] 2R_17768406_SNP [dm6]	G	A	4.711e^-4	0.928	SYNONYMOUS_CODING CG18635 UPSTREAM CG14488	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9973649	3R_9973649_SNP [dm3] 3R_14147927_SNP [dm6]	A	C	4.714e^-4	0.928	DOWNSTREAM CG14355 INTERGENIC
3R	19455441	3R_19455441_SNP [dm3] 3R_23629719_SNP [dm6]	T	G	4.718e^-4	0.928	INTRON CG31145
3L	2034008	3L_2034008_SNP [dm3] 3L_2034008_SNP [dm6]	G	A	4.721e^-4	0.928	INTERGENIC
2R	17906981	2R_17906981_SNP [dm3] 2R_22019476_SNP [dm6]	A	G	4.724e^-4	0.928	INTRON CG34370
2R	5283768	2R_5283768_SNP [dm3] 2R_9396263_SNP [dm6]	C	T	4.738e^-4	0.928	UPSTREAM CG8800 DOWNSTREAM CG8801 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	1939607	2L_1939607_SNP [dm3] 2L_1939607_SNP [dm6]	T	C	4.740e^-4	0.928	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA
2R	5951587	2R_5951587_SNP [dm3] 2R_10064082_SNP [dm6]	G	T	4.761e^-4	0.928	NON_SYNONYMOUS_CODING CG2292 DOWNSTREAM magu	TF binding site mE1_TFBS_HSA
X	5038346	X_5038346_SNP [dm3] X_5144313_SNP [dm6]	G	A	4.762e^-4	0.928	INTRON rg & 1 other
X	21262145	X_21262145_SNP [dm3] X_21391118_SNP [dm6]	A	T	4.766e^-4	0.928	UTR_3_PRIME mst DOWNSTREAM mst
2L	6761176	2L_6761176_SNP [dm3] 2L_6761176_SNP [dm6]	A	G	4.768e^-4	0.928	SPLICE_SITE_REGION CG11321 INTRON CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	6761208	2L_6761208_SNP [dm3] 2L_6761208_SNP [dm6]	A	T	4.768e^-4	0.928	INTRON CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	6761280	2L_6761280_SNP [dm3] 2L_6761280_SNP [dm6]	G	A	4.768e^-4	0.928	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
2L	13616885	2L_13616885_SNP [dm3] 2L_13616885_SNP [dm6]	C	T	4.776e^-4	0.928	INTRON kuz
2R	9774225	2R_9774225_SNP [dm3] 2R_13886720_SNP [dm6]	A	C	4.780e^-4	0.928	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	9774295	2R_9774295_SNP [dm3] 2R_13886790_SNP [dm6]	G	A	4.780e^-4	0.928	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	11793527	3L_11793527_SNP [dm3] 3L_11800427_SNP [dm6]	G	A	4.783e^-4	0.928	INTRON CG10361
2L	7114998	2L_7114998_DEL [dm3] 2L_7114998_DEL [dm6]	TGAAAA	T	4.791e^-4	0.928	INTRON Pvf3
3L	2034177	3L_2034177_SNP [dm3] 3L_2034177_SNP [dm6]	T	A	4.792e^-4	0.928	INTERGENIC
3R	15075076	3R_15075076_SNP [dm3] 3R_19249354_SNP [dm6]	C	T	4.809e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	4868466	2R_4868466_SNP [dm3] 2R_8980961_SNP [dm6]	T	C	4.809e^-4	0.928	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9223329	3R_9223329_SNP [dm3] 3R_13397607_SNP [dm6]	C	T	4.810e^-4	0.928	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
3L	8705055	3L_8705055_SNP [dm3] 3L_8711955_SNP [dm6]	G	A	4.813e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
3R	6528765	3R_6528765_SNP [dm3] 3R_10703043_SNP [dm6]	C	G	4.821e^-4	0.928	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
2R	7189467	2R_7189467_SNP [dm3] 2R_11301962_SNP [dm6]	T	G	4.824e^-4	0.928	UTR_5_PRIME CG7741 DOWNSTREAM Obp47b	TF binding site BDTNP1_TFBS_dl
2L	12296407	2L_12296407_SNP [dm3] 2L_12296407_SNP [dm6]	T	A	4.834e^-4	0.928	INTRON aret
X	12526798	X_12526798_DEL [dm3] X_12632765_DEL [dm6]	GTG	G	4.837e^-4	0.928	UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
3R	24214350	3R_24214350_DEL [dm3] 3R_28388628_DEL [dm6]	CT	C	4.842e^-4	0.928	INTERGENIC
3R	9973546	3R_9973546_SNP [dm3] 3R_14147824_SNP [dm6]	A	C	4.856e^-4	0.928	DOWNSTREAM CG14355 INTERGENIC
3R	19356443	3R_19356443_SNP [dm3] 3R_23530721_SNP [dm6]	A	T	4.882e^-4	0.928	INTRON CG10175
2R	17523820	2R_17523820_SNP [dm3] 2R_21636315_SNP [dm6]	G	C	4.882e^-4	0.928	SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17523847	2R_17523847_SNP [dm3] 2R_21636342_SNP [dm6]	T	C	4.882e^-4	0.928	SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17523850	2R_17523850_SNP [dm3] 2R_21636345_SNP [dm6]	C	G	4.882e^-4	0.928	SYNONYMOUS_CODING CG10321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25779756	3R_25779756_SNP [dm3] 3R_29954034_SNP [dm6]	A	T	4.895e^-4	0.928	INTRON TkR99D
3R	10167756	3R_10167756_DEL [dm3] 3R_14342034_DEL [dm6]	TA	T	4.903e^-4	0.928	INTRON NK7.1
2L	10054936	2L_10054936_SNP [dm3] 2L_10054936_SNP [dm6]	T	C	4.911e^-4	0.928	SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12764777	2L_12764777_SNP [dm3] 2L_12764777_SNP [dm6]	G	A	4.913e^-4	0.928	INTERGENIC
X	22346690	X_22346690_INS [dm3] X_22944854_INS [dm6]	C	GTTTTGATATTTAACCTTCC...	4.914e^-4	0.928	UPSTREAM CG41106 INTERGENIC
3R	2679470	3R_2679470_SNP [dm3] 3R_6853748_SNP [dm6]	A	G	4.915e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10572668	3R_10572668_SNP [dm3] 3R_14746946_SNP [dm6]	C	G	4.917e^-4	0.928	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5607155	X_5607155_DEL [dm3] X_5713122_DEL [dm6]	AA	C	4.919e^-4	0.928	INTRON CG33080
2R	1999608	2R_1999608_SNP [dm3] 2R_6112103_SNP [dm6]	T	C	4.944e^-4	0.928	INTRON EcR
2R	14962158	2R_14962158_SNP [dm3] 2R_19074653_SNP [dm6]	A	C	4.944e^-4	0.928	INTRON 5-HT1A
2R	14962160	2R_14962160_SNP [dm3] 2R_19074655_SNP [dm6]	A	G	4.944e^-4	0.928	INTRON 5-HT1A
3R	26640740	3R_26640740_SNP [dm3] 3R_30815018_SNP [dm6]	A	T	4.960e^-4	0.928	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3L	5797672	3L_5797672_SNP [dm3] 3L_5804572_SNP [dm6]	G	T	4.968e^-4	0.928	SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11657782	3R_11657782_SNP [dm3] 3R_15832060_SNP [dm6]	G	A	4.969e^-4	0.928	SYNONYMOUS_CODING rec DOWNSTREAM CG43318	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3534460	3L_3534460_SNP [dm3] 3L_3534460_SNP [dm6]	A	G	4.975e^-4	0.928	INTRON Eip63E
2L	10134326	2L_10134326_SNP [dm3] 2L_10134326_SNP [dm6]	C	T	4.978e^-4	0.928	INTRON CG44153
2L	7611488	2L_7611488_SNP [dm3] 2L_7611488_SNP [dm6]	G	T	4.978e^-4	0.928	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
3L	10027328	3L_10027328_SNP [dm3] 3L_10034228_SNP [dm6]	T	C	4.978e^-4	0.928	INTRON dpr6
3L	10027386	3L_10027386_SNP [dm3] 3L_10034286_SNP [dm6]	T	C	4.978e^-4	0.928	INTRON dpr6
3L	10027412	3L_10027412_SNP [dm3] 3L_10034312_SNP [dm6]	A	T	4.978e^-4	0.928	INTRON dpr6
3L	12682358	3L_12682358_SNP [dm3] 3L_12689258_SNP [dm6]	T	A	4.978e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19996694	3R_19996694_SNP [dm3] 3R_24170972_SNP [dm6]	C	G	4.978e^-4	0.928	INTERGENIC
3R	20001616	3R_20001616_SNP [dm3] 3R_24175894_SNP [dm6]	T	A	4.978e^-4	0.928	INTRON CG13606
X	15042331	X_15042331_SNP [dm3] X_15148298_SNP [dm6]	G	A	4.978e^-4	0.928	INTRON CG9095
3R	4238653	3R_4238653_INS [dm3] 3R_8412931_INS [dm6]	C	TGGTCAGATCAA...	4.980e^-4	0.928	INTRON CG45263
3R	26929815	3R_26929815_SNP [dm3] 3R_31104093_SNP [dm6]	T	C	4.984e^-4	0.928	INTERGENIC
3L	10719998	3L_10719998_SNP [dm3] 3L_10726898_SNP [dm6]	A	C	5.000e^-4	0.928	INTERGENIC
2R	9199207	2R_9199207_SNP [dm3] 2R_13311702_SNP [dm6]	A	G	5.000e^-4	0.928	INTERGENIC
3L	10753457	3L_10753457_DEL [dm3] 3L_10760357_DEL [dm6]	TT	T	5.007e^-4	0.928	INTERGENIC
2R	9717994	2R_9717994_INS [dm3] 2R_13830489_INS [dm6]	A	AGATAC	5.008e^-4	0.928	INTRON CG6329
3L	9983239	3L_9983239_SNP [dm3] 3L_9990139_SNP [dm6]	A	C	5.014e^-4	0.928	INTRON dpr6
3R	24557462	3R_24557462_SNP [dm3] 3R_28731740_SNP [dm6]	T	G	5.028e^-4	0.928	INTRON htt
3L	16790681	3L_16790681_SNP [dm3] 3L_16797581_SNP [dm6]	G	C	5.031e^-4	0.928	INTRON CG9674
2R	7559997	2R_7559997_INS [dm3] 2R_11672492_INS [dm6]	G	GTTTGAAGTGGGCG...	5.035e^-4	0.928	INTRON Roc2 & 1 other	transposable element FlyBase
X	20633120	X_20633120_SNP [dm3] X_20762093_SNP [dm6]	C	A	5.039e^-4	0.928	UTR_3_PRIME shakB
2R	20405171	2R_20405171_SNP [dm3] 2R_24517648_SNP [dm6]	A	T	5.042e^-4	0.928	UPSTREAM Ir60c DOWNSTREAM Ir60b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18680514	3R_18680514_SNP [dm3] 3R_22854792_SNP [dm6]	T	C	5.046e^-4	0.928	INTERGENIC
3R	17022832	3R_17022832_SNP [dm3] 3R_21197110_SNP [dm6]	G	T	5.063e^-4	0.928	INTRON SNF4Agamma
2R	17371465	2R_17371465_SNP [dm3] 2R_21483960_SNP [dm6]	C	G	5.065e^-4	0.928	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18024519	3L_18024519_DEL [dm3] 3L_18031419_DEL [dm6]	AA	A	5.080e^-4	0.928	INTRON Eip75B
2R	8702326	2R_8702326_SNP [dm3] 2R_12814821_SNP [dm6]	G	A	5.094e^-4	0.928	INTERGENIC
2R	8702332	2R_8702332_SNP [dm3] 2R_12814827_SNP [dm6]	T	C	5.094e^-4	0.928	INTERGENIC
3R	19272626	3R_19272626_SNP [dm3] 3R_23446904_SNP [dm6]	G	A	5.094e^-4	0.928	INTRON CG4374
2L	6987332	2L_6987332_SNP [dm3] 2L_6987332_SNP [dm6]	C	A	5.096e^-4	0.928	DOWNSTREAM CR44326 INTRON uif
2L	648858	2L_648858_SNP [dm3] 2L_648858_SNP [dm6]	G	A	5.096e^-4	0.928	SYNONYMOUS_CODING ds
2L	18227648	2L_18227648_SNP [dm3] 2L_18227648_SNP [dm6]	G	A	5.099e^-4	0.928	INTRON CG42750
3L	2894285	3L_2894285_SNP [dm3] 3L_2894285_SNP [dm6]	A	G	5.100e^-4	0.928	UPSTREAM Shab INTERGENIC
3L	17668850	3L_17668850_DEL [dm3] 3L_17675750_DEL [dm6]	CC	C	5.107e^-4	0.928	INTRON CG34251
2L	19549387	2L_19549387_INS [dm3] 2L_19549387_INS [dm6]	T	TGAAT	5.109e^-4	0.928	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	9905685	3R_9905685_SNP [dm3] 3R_14079963_SNP [dm6]	T	A	5.111e^-4	0.928	INTRON foxo
3R	9905690	3R_9905690_SNP [dm3] 3R_14079968_SNP [dm6]	C	T	5.111e^-4	0.928	INTRON foxo
3R	19324509	3R_19324509_DEL [dm3] 3R_23498787_DEL [dm6]	AGCCAGCGTCTCA...	A	5.111e^-4	0.928	INTERGENIC
3R	24045669	3R_24045669_SNP [dm3] 3R_28219947_SNP [dm6]	C	G	5.119e^-4	0.928	INTRON CG34354
2R	4137509	2R_4137509_SNP [dm3] 2R_8250004_SNP [dm6]	C	A	5.119e^-4	0.928	UPSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad
2L	16090336	2L_16090336_SNP [dm3] 2L_16090336_SNP [dm6]	T	C	5.125e^-4	0.928	INTERGENIC
3R	25369955	3R_25369955_SNP [dm3] 3R_29544233_SNP [dm6]	G	T	5.133e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5227108	3L_5227108_SNP [dm3] 3L_5234008_SNP [dm6]	C	T	5.136e^-4	0.928	UPSTREAM CG4669 INTRON shep
3L	6488539	3L_6488539_SNP [dm3] 3L_6495439_SNP [dm6]	G	T	5.136e^-4	0.928	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	6531110	3R_6531110_SNP [dm3] 3R_10705388_SNP [dm6]	C	T	5.141e^-4	0.928	NON_SYNONYMOUS_CODING CG31467 UPSTREAM CG31391
3L	5422926	3L_5422926_SNP [dm3] 3L_5429826_SNP [dm6]	T	A	5.152e^-4	0.928	INTRON CG34391
2L	11734937	2L_11734937_INS [dm3] 2L_11734937_INS [dm6]	A	AA	5.165e^-4	0.928	INTERGENIC
2R	11957941	2R_11957941_SNP [dm3] 2R_16070436_SNP [dm6]	G	A	5.182e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18508803	2L_18508803_SNP [dm3] 2L_18508803_SNP [dm6]	C	T	5.197e^-4	0.928	UPSTREAM CG10178 INTERGENIC
3L	5559834	3L_5559834_SNP [dm3] 3L_5566734_SNP [dm6]	G	A	5.208e^-4	0.928	UTR_3_PRIME bc10 DOWNSTREAM Msr-110
3L	5559835	3L_5559835_INS [dm3] 3L_5566735_INS [dm6]	A	ATAA	5.208e^-4	0.928	UTR_3_PRIME bc10 DOWNSTREAM Msr-110
2L	9679130	2L_9679130_SNP [dm3] 2L_9679130_SNP [dm6]	G	A	5.208e^-4	0.928	INTERGENIC
2L	8165110	2L_8165110_SNP [dm3] 2L_8165110_SNP [dm6]	A	G	5.223e^-4	0.928	INTRON Piezo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23522900	3R_23522900_SNP [dm3] 3R_27697178_SNP [dm6]	T	C	5.228e^-4	0.928	SYNONYMOUS_CODING ALiX DOWNSTREAM CG43320	TF binding site mE1_TFBS_chinmo
3R	16542023	3R_16542023_SNP [dm3] 3R_20716301_SNP [dm6]	A	G	5.231e^-4	0.928	INTERGENIC
3R	21442195	3R_21442195_SNP [dm3] 3R_25616473_SNP [dm6]	G	A	5.231e^-4	0.928	INTRON Npl4	TF binding site BDTNP1_TFBS_twi
3R	12009427	3R_12009427_SNP [dm3] 3R_16183705_SNP [dm6]	A	G	5.250e^-4	0.928	INTRON CG8927
3R	22673898	3R_22673898_SNP [dm3] 3R_26848176_SNP [dm6]	C	A	5.257e^-4	0.928	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22673946	3R_22673946_SNP [dm3] 3R_26848224_SNP [dm6]	A	G	5.257e^-4	0.928	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15394540	2R_15394540_SNP [dm3] 2R_19507035_SNP [dm6]	G	T	5.296e^-4	0.928	UPSTREAM tRNA:H:56E INTERGENIC
2L	16721180	2L_16721180_SNP [dm3] 2L_16721180_SNP [dm6]	C	A	5.297e^-4	0.928	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5940312	2R_5940312_SNP [dm3] 2R_10052807_SNP [dm6]	T	C	5.298e^-4	0.928	UTR_5_PRIME magu UPSTREAM sel DOWNSTREAM CR44298 INTRON magu EXON CR44297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17720615	2R_17720615_SNP [dm3] 2R_21833110_SNP [dm6]	A	T	5.316e^-4	0.928	INTRON CG34040	TF binding site mE1_TFBS_sens
2L	6541683	2L_6541683_SNP [dm3] 2L_6541683_SNP [dm6]	G	A	5.337e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	6541715	2L_6541715_DEL [dm3] 2L_6541715_DEL [dm6]	TT	T	5.337e^-4	0.928	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	15987954	3L_15987954_SNP [dm3] 3L_15994854_SNP [dm6]	T	C	5.344e^-4	0.928	SYNONYMOUS_CODING CG5830
2L	3801684	2L_3801684_SNP [dm3] 2L_3801684_SNP [dm6]	A	C	5.363e^-4	0.928	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18621801	3R_18621801_SNP [dm3] 3R_22796079_SNP [dm6]	A	T	5.370e^-4	0.928	INTERGENIC
3L	12609672	3L_12609672_SNP [dm3] 3L_12616572_SNP [dm6]	G	A	5.370e^-4	0.928	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	8937238	3R_8937238_SNP [dm3] 3R_13111516_SNP [dm6]	A	T	5.371e^-4	0.928	INTRON timeout
2R	3627349	2R_3627349_SNP [dm3] 2R_7739844_SNP [dm6]	T	C	5.374e^-4	0.928	NON_SYNONYMOUS_CODING CG45093 UTR_3_PRIME CG30497	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2702050	3R_2702050_SNP [dm3] 3R_6876328_SNP [dm6]	T	C	5.378e^-4	0.928	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9109002	3R_9109002_SNP [dm3] 3R_13283280_SNP [dm6]	C	A	5.421e^-4	0.928	INTRON CG8630	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6987272	2L_6987272_DEL [dm3] 2L_6987272_DEL [dm6]	GA	G	5.421e^-4	0.928	DOWNSTREAM CR44326 INTRON uif
3L	2062397	3L_2062397_SNP [dm3] 3L_2062397_SNP [dm6]	A	G	5.423e^-4	0.928	INTRON sls
3R	14832204	3R_14832204_SNP [dm3] 3R_19006482_SNP [dm6]	G	T	5.431e^-4	0.928	INTRON gukh
X	4591484	X_4591484_SNP [dm3] X_4697451_SNP [dm6]	T	C	5.433e^-4	0.928	INTRON ctp
3R	9094937	3R_9094937_SNP [dm3] 3R_13269215_SNP [dm6]	T	C	5.444e^-4	0.928	UTR_3_PRIME Su_var_3-7 & 1 other DOWNSTREAM Su_var_3-7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13531966	2L_13531966_DEL [dm3] 2L_13531966_DEL [dm6]	AAAA	A	5.454e^-4	0.928	UPSTREAM CG33644 & 1 other DOWNSTREAM CG33643 INTRON B4
2L	2308795	2L_2308795_SNP [dm3] 2L_2308795_SNP [dm6]	C	T	5.468e^-4	0.928	UTR_3_PRIME CG16995 & 1 other DOWNSTREAM CG9967
2L	2308799	2L_2308799_SNP [dm3] 2L_2308799_SNP [dm6]	C	A	5.468e^-4	0.928	UTR_3_PRIME CG16995 & 1 other
2R	11037031	2R_11037031_SNP [dm3] 2R_15149526_SNP [dm6]	T	C	5.468e^-4	0.928	UTR_3_PRIME CG7544
2R	11037110	2R_11037110_SNP [dm3] 2R_15149605_SNP [dm6]	C	T	5.468e^-4	0.928	UTR_3_PRIME CG7544
3R	18606915	3R_18606915_SNP [dm3] 3R_22781193_SNP [dm6]	T	A	5.476e^-4	0.928	UPSTREAM CG7029 INTRON CG7029 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1413998	3L_1413998_SNP [dm3] 3L_1413998_SNP [dm6]	T	A	5.477e^-4	0.928	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6528633	3R_6528633_SNP [dm3] 3R_10702911_SNP [dm6]	T	C	5.486e^-4	0.928	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
3R	6528640	3R_6528640_SNP [dm3] 3R_10702918_SNP [dm6]	C	T	5.486e^-4	0.928	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
3R	19196624	3R_19196624_SNP [dm3] 3R_23370902_SNP [dm6]	C	G	5.493e^-4	0.928	INTERGENIC
3R	19125075	3R_19125075_SNP [dm3] 3R_23299353_SNP [dm6]	A	G	5.497e^-4	0.928	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	2718729	3R_2718729_SNP [dm3] 3R_6893007_SNP [dm6]	G	T	5.513e^-4	0.928	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3R	2718731	3R_2718731_SNP [dm3] 3R_6893009_SNP [dm6]	T	G	5.513e^-4	0.928	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	13800497	2L_13800497_SNP [dm3] 2L_13800497_SNP [dm6]	T	C	5.517e^-4	0.928	DOWNSTREAM Sec71 INTERGENIC
2L	7532721	2L_7532721_SNP [dm3] 2L_7532721_SNP [dm6]	C	G	5.526e^-4	0.928	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13759240	3R_13759240_SNP [dm3] 3R_17933518_SNP [dm6]	T	A	5.540e^-4	0.928	INTRON cpo
2R	8469659	2R_8469659_SNP [dm3] 2R_12582154_SNP [dm6]	G	C	5.545e^-4	0.928	INTRON Sin3A
2L	17044356	2L_17044356_SNP [dm3] 2L_17044356_SNP [dm6]	G	A	5.547e^-4	0.928	INTERGENIC
2L	17844192	2L_17844192_SNP [dm3] 2L_17844192_SNP [dm6]	A	T	5.548e^-4	0.928	UPSTREAM CadN2 INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15017060	3L_15017060_DEL [dm3] 3L_15023960_DEL [dm6]	ATA	A	5.551e^-4	0.928	UTR_3_PRIME CG32148 INTRON Sytbeta
2R	8522163	2R_8522163_SNP [dm3] 2R_12634658_SNP [dm6]	G	A	5.557e^-4	0.928	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site mE1_TFBS_sens
2L	15299960	2L_15299960_SNP [dm3] 2L_15299960_SNP [dm6]	T	C	5.562e^-4	0.928	DOWNSTREAM CG15262 INTERGENIC
2L	16696230	2L_16696230_SNP [dm3] 2L_16696230_SNP [dm6]	C	T	5.568e^-4	0.928	INTRON grp	TF binding site BDTNP1_TFBS_twi
3R	22442189	3R_22442189_SNP [dm3] 3R_26616467_SNP [dm6]	C	T	5.575e^-4	0.928	INTERGENIC
2R	7616105	2R_7616105_SNP [dm3] 2R_11728600_SNP [dm6]	G	A	5.576e^-4	0.928	INTERGENIC
2L	5967364	2L_5967364_SNP [dm3] 2L_5967364_SNP [dm6]	G	A	5.578e^-4	0.928	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9444132	2R_9444132_SNP [dm3] 2R_13556627_SNP [dm6]	G	A	5.578e^-4	0.928	NON_SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9140199	2L_9140199_SNP [dm3] 2L_9140199_SNP [dm6]	G	A	5.582e^-4	0.928	INTRON CG32982
2R	15268776	2R_15268776_SNP [dm3] 2R_19381271_SNP [dm6]	A	G	5.584e^-4	0.928	UPSTREAM CG10073 INTRON CG10073
2R	15268777	2R_15268777_SNP [dm3] 2R_19381272_SNP [dm6]	A	T	5.584e^-4	0.928	UPSTREAM CG10073 INTRON CG10073
2R	8702506	2R_8702506_SNP [dm3] 2R_12815001_SNP [dm6]	T	C	5.593e^-4	0.928	INTERGENIC
3R	12941329	3R_12941329_SNP [dm3] 3R_17115607_SNP [dm6]	A	G	5.603e^-4	0.928	INTRON cher
3R	12941331	3R_12941331_SNP [dm3] 3R_17115609_SNP [dm6]	C	T	5.603e^-4	0.928	INTRON cher
3L	7595688	3L_7595688_INS [dm3] 3L_7602588_INS [dm6]	C	CC	5.607e^-4	0.928	INTRON CG33275
2R	19184572	2R_19184572_SNP [dm3] 2R_23297049_SNP [dm6]	A	C	5.615e^-4	0.928	INTERGENIC
2L	3478860	2L_3478860_SNP [dm3] 2L_3478860_SNP [dm6]	G	A	5.616e^-4	0.928	INTRON Thor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	18652338	2R_18652338_SNP [dm3] 2R_22764833_SNP [dm6]	A	C	5.619e^-4	0.928	UTR_3_PRIME CG13527 INTRON CG42260 & 1 other
3R	2706721	3R_2706721_SNP [dm3] 3R_6880999_SNP [dm6]	C	T	5.624e^-4	0.928	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	951561	2L_951561_INS [dm3] 2L_951561_INS [dm6]	C	CACTAACACCCC...	5.624e^-4	0.928	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	8327162	X_8327162_SNP [dm3] X_8433129_SNP [dm6]	C	T	5.627e^-4	0.928	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other
3R	499310	3R_499310_SNP [dm3] 3R_4673588_SNP [dm6]	T	A	5.628e^-4	0.928	UPSTREAM CR44157 INTRON CG43427
3R	19500331	3R_19500331_SNP [dm3] 3R_23674609_SNP [dm6]	C	T	5.635e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9866318	3R_9866318_SNP [dm3] 3R_14040596_SNP [dm6]	G	A	5.635e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1520582	3L_1520582_SNP [dm3] 3L_1520582_SNP [dm6]	G	C	5.652e^-4	0.928	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3R	25766191	3R_25766191_SNP [dm3] 3R_29940469_SNP [dm6]	A	G	5.654e^-4	0.928	SYNONYMOUS_CODING CG15523
X	18351376	X_18351376_DEL [dm3] X_18457343_DEL [dm6]	TGC	T	5.656e^-4	0.928	INTRON CG32547
3L	5422975	3L_5422975_SNP [dm3] 3L_5429875_SNP [dm6]	T	G	5.658e^-4	0.928	INTRON CG34391
2R	11745905	2R_11745905_SNP [dm3] 2R_15858400_SNP [dm6]	G	A	5.666e^-4	0.928	SYNONYMOUS_CODING Gpo-1 DOWNSTREAM CG12970	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5423109	3L_5423109_SNP [dm3] 3L_5430009_SNP [dm6]	T	C	5.668e^-4	0.928	INTRON CG34391
X	2613920	X_2613920_SNP [dm3] X_2719887_SNP [dm6]	G	C	5.672e^-4	0.928	NON_SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26555952	3R_26555952_SNP [dm3] 3R_30730230_SNP [dm6]	A	G	5.672e^-4	0.928	SYNONYMOUS_CODING CG11313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9689251	3R_9689251_SNP [dm3] 3R_13863529_SNP [dm6]	A	G	5.680e^-4	0.928	INTERGENIC
3R	9689277	3R_9689277_SNP [dm3] 3R_13863555_SNP [dm6]	C	T	5.680e^-4	0.928	INTERGENIC
X	22330541	X_22330541_SNP [dm3] X_22928705_SNP [dm6]	G	A	5.680e^-4	0.928	INTERGENIC
3R	10052913	3R_10052913_SNP [dm3] 3R_14227191_SNP [dm6]	A	T	5.684e^-4	0.928	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3R	10121237	3R_10121237_DEL [dm3] 3R_14295515_DEL [dm6]	ACCCAA	A	5.698e^-4	0.928	INTRON CG12207
2L	5510412	2L_5510412_SNP [dm3] 2L_5510412_SNP [dm6]	A	T	5.712e^-4	0.928	INTERGENIC
3L	11793541	3L_11793541_SNP [dm3] 3L_11800441_SNP [dm6]	C	A	5.712e^-4	0.928	INTRON CG10361
3R	14331468	3R_14331468_SNP [dm3] 3R_18505746_SNP [dm6]	C	T	5.715e^-4	0.928	INTRON fru
2R	5340995	2R_5340995_SNP [dm3] 2R_9453490_SNP [dm6]	C	T	5.719e^-4	0.928	SYNONYMOUS_CODING CG33758 DOWNSTREAM CG33757 INTRON Camta
X	3466589	X_3466589_SNP [dm3] X_3572556_SNP [dm6]	A	C	5.720e^-4	0.928	UPSTREAM CG32791 DOWNSTREAM ppk8 INTRON CG2875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15255037	2L_15255037_SNP [dm3] 2L_15255037_SNP [dm6]	G	A	5.722e^-4	0.928	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2R	15268767	2R_15268767_SNP [dm3] 2R_19381262_SNP [dm6]	A	C	5.730e^-4	0.928	UPSTREAM CG10073 INTRON CG10073
3L	18693858	3L_18693858_SNP [dm3] 3L_18700758_SNP [dm6]	G	A	5.732e^-4	0.928	INTERGENIC
3L	923943	3L_923943_INS [dm3] 3L_923943_INS [dm6]	G	GG	5.739e^-4	0.928	INTRON Glut1
3L	3342469	3L_3342469_SNP [dm3] 3L_3342469_SNP [dm6]	A	C	5.739e^-4	0.928	INTRON kst
3L	11666640	3L_11666640_SNP [dm3] 3L_11673540_SNP [dm6]	G	T	5.744e^-4	0.928	INTRON CG32085
2L	16946250	2L_16946250_SNP [dm3] 2L_16946250_SNP [dm6]	T	C	5.767e^-4	0.928	UPSTREAM CR43053 INTERGENIC
3L	9206907	3L_9206907_SNP [dm3] 3L_9213807_SNP [dm6]	C	T	5.771e^-4	0.928	SYNONYMOUS_CODING CG4476
3L	12339234	3L_12339234_SNP [dm3] 3L_12346134_SNP [dm6]	T	C	5.778e^-4	0.928	INTRON CrzR
2L	13157050	2L_13157050_SNP [dm3] 2L_13157050_SNP [dm6]	C	A	5.779e^-4	0.928	INTERGENIC
2R	1921747	2R_1921747_SNP [dm3] 2R_6034242_SNP [dm6]	A	G	5.780e^-4	0.928	INTRON SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2707463	3R_2707463_SNP [dm3] 3R_6881741_SNP [dm6]	T	C	5.780e^-4	0.928	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18896376	3R_18896376_SNP [dm3] 3R_23070654_SNP [dm6]	G	A	5.783e^-4	0.928	UTR_3_PRIME CG13830
3L	2481956	3L_2481956_SNP [dm3] 3L_2481956_SNP [dm6]	G	A	5.793e^-4	0.928	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15731309	2R_15731309_SNP [dm3] 2R_19843804_SNP [dm6]	A	C	5.797e^-4	0.928	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	26194308	3R_26194308_SNP [dm3] 3R_30368586_SNP [dm6]	T	C	5.798e^-4	0.928	UTR_3_PRIME hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6540134	2L_6540134_SNP [dm3] 2L_6540134_SNP [dm6]	G	A	5.807e^-4	0.928	INTRON eya
2L	6540145	2L_6540145_SNP [dm3] 2L_6540145_SNP [dm6]	G	T	5.807e^-4	0.928	INTRON eya
3L	11994256	3L_11994256_SNP [dm3] 3L_12001156_SNP [dm6]	G	A	5.808e^-4	0.928	UTR_5_PRIME Pop2 INTRON Pop2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11994278	3L_11994278_SNP [dm3] 3L_12001178_SNP [dm6]	T	C	5.808e^-4	0.928	UPSTREAM Pop2 INTRON Pop2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8564898	2L_8564898_SNP [dm3] 2L_8564898_SNP [dm6]	T	C	5.810e^-4	0.928	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5283990	2R_5283990_SNP [dm3] 2R_9396485_SNP [dm6]	G	A	5.812e^-4	0.928	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
3R	24727946	3R_24727946_SNP [dm3] 3R_28902224_SNP [dm6]	T	G	5.830e^-4	0.928	UPSTREAM Doa INTRON Doa
X	9022594	X_9022594_SNP [dm3] X_9128561_SNP [dm6]	A	C	5.857e^-4	0.928	INTRON fend	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15787314	2R_15787314_SNP [dm3] 2R_19899809_SNP [dm6]	T	A	5.865e^-4	0.928	INTERGENIC
3L	18133888	3L_18133888_SNP [dm3] 3L_18140788_SNP [dm6]	A	T	5.866e^-4	0.928	INTRON gk
3L	21114939	3L_21114939_DEL [dm3] 3L_21121839_DEL [dm6]	ATTGA	A	5.881e^-4	0.928	UTR_5_PRIME CG43938 INTRON ko	TF binding site mE1_TFBS_cad
3R	19207015	3R_19207015_SNP [dm3] 3R_23381293_SNP [dm6]	G	T	5.884e^-4	0.928	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3L	5702031	3L_5702031_DEL [dm3] 3L_5708931_DEL [dm6]	TT	T	5.887e^-4	0.928	INTRON sif
3L	18111112	3L_18111112_SNP [dm3] 3L_18118012_SNP [dm6]	T	C	5.893e^-4	0.928	UTR_3_PRIME CG32195 INTRON CG7341
3R	19500374	3R_19500374_SNP [dm3] 3R_23674652_SNP [dm6]	A	T	5.895e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2720706	3L_2720706_SNP [dm3] 3L_2720706_SNP [dm6]	G	A	5.896e^-4	0.928	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11946516	3R_11946516_SNP [dm3] 3R_16120794_SNP [dm6]	C	G	5.903e^-4	0.928	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8734243	X_8734243_SNP [dm3] X_8840210_SNP [dm6]	C	A	5.905e^-4	0.928	INTRON CG12075
2R	11528811	2R_11528811_SNP [dm3] 2R_15641306_SNP [dm6]	C	G	5.906e^-4	0.928	INTRON CG42524
3L	24020710	3L_24020710_SNP [dm3] 3L_24027610_SNP [dm6]	C	G	5.912e^-4	0.928	UPSTREAM CG40045 INTERGENIC
2R	19843911	2R_19843911_DEL [dm3] 2R_23956388_DEL [dm6]	ATAAG	A	5.916e^-4	0.928	UTR_3_PRIME thoc5 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16965809	3R_16965809_SNP [dm3] 3R_21140087_SNP [dm6]	T	G	5.916e^-4	0.928	UTR_3_PRIME meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad
3L	15257531	3L_15257531_SNP [dm3] 3L_15264431_SNP [dm6]	T	C	5.917e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14930108	3L_14930108_SNP [dm3] 3L_14937008_SNP [dm6]	C	T	5.934e^-4	0.928	INTRON DCX-EMAP
3R	16976284	3R_16976284_SNP [dm3] 3R_21150562_SNP [dm6]	T	A	5.940e^-4	0.928	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22963767	3L_22963767_SNP [dm3] 3L_22970667_SNP [dm6]	T	C	5.941e^-4	0.928	INTERGENIC
2R	17708424	2R_17708424_SNP [dm3] 2R_21820919_SNP [dm6]	C	G	5.948e^-4	0.928	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12436577	3L_12436577_SNP [dm3] 3L_12443477_SNP [dm6]	C	A	5.953e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25369816	3R_25369816_SNP [dm3] 3R_29544094_SNP [dm6]	C	T	5.956e^-4	0.928	INTERGENIC
3R	2674811	3R_2674811_SNP [dm3] 3R_6849089_SNP [dm6]	T	A	5.957e^-4	0.928	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2674814	3R_2674814_MNP [dm3] 3R_6849092_MNP [dm6]	TTT	AAA	5.957e^-4	0.928	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2674818	3R_2674818_INS [dm3] 3R_6849096_INS [dm6]	G	GA	5.957e^-4	0.928	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4058534	3L_4058534_SNP [dm3] 3L_4058534_SNP [dm6]	T	C	5.960e^-4	0.928	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	19482000	2L_19482000_SNP [dm3] 2L_19482000_SNP [dm6]	G	C	5.971e^-4	0.928	DOWNSTREAM CG10195 INTERGENIC
2L	5115803	2L_5115803_SNP [dm3] 2L_5115803_SNP [dm6]	A	T	5.981e^-4	0.928	INTRON Msp300
3R	2720404	3R_2720404_SNP [dm3] 3R_6894682_SNP [dm6]	T	C	5.987e^-4	0.928	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	18402743	3R_18402743_SNP [dm3] 3R_22577021_SNP [dm6]	G	A	5.991e^-4	0.928	INTRON CG33110
X	2624115	X_2624115_SNP [dm3] X_2730082_SNP [dm6]	C	G	5.995e^-4	0.928	DOWNSTREAM ttm50 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17573745	3R_17573745_SNP [dm3] 3R_21748023_SNP [dm6]	T	G	5.997e^-4	0.928	SYNONYMOUS_CODING CG31343	TF binding site mE1_TFBS_cad
2R	9199245	2R_9199245_SNP [dm3] 2R_13311740_SNP [dm6]	G	A	6.001e^-4	0.928	INTERGENIC
3R	15656881	3R_15656881_SNP [dm3] 3R_19831159_SNP [dm6]	C	A	6.007e^-4	0.928	INTRON bnl
3L	18015294	3L_18015294_SNP [dm3] 3L_18022194_SNP [dm6]	C	T	6.014e^-4	0.928	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	18015302	3L_18015302_SNP [dm3] 3L_18022202_SNP [dm6]	C	T	6.014e^-4	0.928	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3R	16965384	3R_16965384_SNP [dm3] 3R_21139662_SNP [dm6]	T	C	6.020e^-4	0.928	INTRON meigo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22326311	X_22326311_SNP [dm3] X_22924475_SNP [dm6]	T	C	6.024e^-4	0.928	INTERGENIC	transposable element FlyBase
3R	25331668	3R_25331668_DEL [dm3] 3R_29505946_DEL [dm6]	CATCAGTTCAATCGCAGTAA...	C	6.026e^-4	0.928	INTERGENIC
3R	12692492	3R_12692492_SNP [dm3] 3R_16866770_SNP [dm6]	C	T	6.026e^-4	0.928	INTRON iab-8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	4224914	X_4224914_SNP [dm3] X_4330881_SNP [dm6]	A	C	6.033e^-4	0.928	INTRON norpA
3R	9222430	3R_9222430_SNP [dm3] 3R_13396708_SNP [dm6]	C	G	6.034e^-4	0.928	UTR_3_PRIME CG14374
2R	19416782	2R_19416782_SNP [dm3] 2R_23529259_SNP [dm6]	C	T	6.035e^-4	0.928	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	2308769	2L_2308769_SNP [dm3] 2L_2308769_SNP [dm6]	A	C	6.039e^-4	0.928	UTR_3_PRIME CG16995 & 1 other DOWNSTREAM CG9967
2L	18810013	2L_18810013_SNP [dm3] 2L_18810013_SNP [dm6]	A	G	6.054e^-4	0.928	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10860944	3L_10860944_SNP [dm3] 3L_10867844_SNP [dm6]	C	T	6.058e^-4	0.928	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6736081	2R_6736081_SNP [dm3] 2R_10848576_SNP [dm6]	A	T	6.069e^-4	0.928	INTRON CG30015	TF binding site mE1_TFBS_cad
3L	1796107	3L_1796107_SNP [dm3] 3L_1796107_SNP [dm6]	A	G	6.086e^-4	0.928	UPSTREAM alpha-Spec & 1 other INTRON Cdc37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10291723	3R_10291723_SNP [dm3] 3R_14466001_SNP [dm6]	C	A	6.088e^-4	0.928	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19211878	3R_19211878_SNP [dm3] 3R_23386156_SNP [dm6]	C	T	6.091e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.521e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1333 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16064620	2L_16064620_SNP [dm3] 2L_16064620_SNP [dm6]	T	C	3.348e^-6	0.977	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2R	7111471	2R_7111471_SNP [dm3] 2R_11223966_SNP [dm6]	T	A	7.211e^-6	0.977	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3L	4670988	3L_4670988_INS [dm3] 3L_4670988_INS [dm6]	G	GATAGCCCG	8.630e^-6	0.977	INTRON axo
2R	10819895	2R_10819895_SNP [dm3] 2R_14932390_SNP [dm6]	T	C	9.726e^-6	0.977	INTRON CG10253
3R	10421783	3R_10421783_SNP [dm3] 3R_14596061_SNP [dm6]	G	T	1.042e^-5	0.977	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
3L	16685310	3L_16685310_SNP [dm3] 3L_16692210_SNP [dm6]	C	T	1.140e^-5	0.977	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2L	12204811	2L_12204811_SNP [dm3] 2L_12204811_SNP [dm6]	C	A	1.169e^-5	0.977	INTRON aret
3L	21343769	3L_21343769_SNP [dm3] 3L_21350669_SNP [dm6]	A	G	1.267e^-5	0.977	SYNONYMOUS_CODING CG32436
3L	1597423	3L_1597423_SNP [dm3] 3L_1597423_SNP [dm6]	C	T	1.299e^-5	0.977	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6096266	3L_6096266_SNP [dm3] 3L_6103166_SNP [dm6]	T	A	1.368e^-5	0.977	INTRON Ets65A
3R	19771816	3R_19771816_SNP [dm3] 3R_23946094_SNP [dm6]	C	A	1.657e^-5	0.977	INTRON CG12268
3L	14487240	3L_14487240_SNP [dm3] 3L_14494140_SNP [dm6]	G	A	1.720e^-5	0.977	INTRON bbg
3L	6492699	3L_6492699_SNP [dm3] 3L_6499599_SNP [dm6]	T	C	1.849e^-5	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	1976970	2L_1976970_SNP [dm3] 2L_1976970_SNP [dm6]	C	T	1.864e^-5	0.977	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1976974	2L_1976974_SNP [dm3] 2L_1976974_SNP [dm6]	T	C	1.864e^-5	0.977	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21836999	3L_21836999_SNP [dm3] 3L_21843899_SNP [dm6]	C	T	1.964e^-5	0.977	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7111474	2R_7111474_SNP [dm3] 2R_11223969_SNP [dm6]	C	A	1.994e^-5	0.977	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
X	22183854	X_22183854_SNP [dm3] X_22782018_SNP [dm6]	A	C	2.207e^-5	0.977	INTRON CR44997
2L	5277617	2L_5277617_SNP [dm3] 2L_5277617_SNP [dm6]	T	C	2.398e^-5	0.977	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12352626	3L_12352626_SNP [dm3] 3L_12359526_SNP [dm6]	C	G	2.553e^-5	0.977	INTERGENIC
2R	10819881	2R_10819881_SNP [dm3] 2R_14932376_SNP [dm6]	T	A	2.585e^-5	0.977	INTRON CG10253
3L	12101233	3L_12101233_SNP [dm3] 3L_12108133_SNP [dm6]	G	T	2.750e^-5	0.977	INTERGENIC
3L	6492702	3L_6492702_SNP [dm3] 3L_6499602_SNP [dm6]	A	T	2.761e^-5	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6492705	3L_6492705_SNP [dm3] 3L_6499605_SNP [dm6]	G	A	2.761e^-5	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	2392200	X_2392200_SNP [dm3] X_2498167_SNP [dm6]	C	T	2.806e^-5	0.977	INTRON trol
3R	17650495	3R_17650495_SNP [dm3] 3R_21824773_SNP [dm6]	T	C	2.906e^-5	0.977	DOWNSTREAM CR45632 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2443451	3L_2443451_SNP [dm3] 3L_2443451_SNP [dm6]	C	T	2.922e^-5	0.977	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19771840	3R_19771840_SNP [dm3] 3R_23946118_SNP [dm6]	C	T	3.014e^-5	0.977	INTRON CG12268
3R	10243398	3R_10243398_SNP [dm3] 3R_14417676_SNP [dm6]	A	T	3.036e^-5	0.977	UPSTREAM natalisin INTRON cv-c
3R	21305723	3R_21305723_SNP [dm3] 3R_25480001_SNP [dm6]	T	G	3.052e^-5	0.977	SYNONYMOUS_CODING XNP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22183899	X_22183899_SNP [dm3] X_22782063_SNP [dm6]	C	T	3.260e^-5	0.977	INTRON CR44997
2R	10819869	2R_10819869_INS [dm3] 2R_14932364_INS [dm6]	T	TT	3.260e^-5	0.977	INTRON CG10253
2R	17861562	2R_17861562_INS [dm3] 2R_21974057_INS [dm6]	A	AA	3.317e^-5	0.977	INTRON CG9304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1998443	2L_1998443_SNP [dm3] 2L_1998443_SNP [dm6]	T	C	3.363e^-5	0.977	SYNONYMOUS_CODING CG33543
3L	4577552	3L_4577552_SNP [dm3] 3L_4577552_SNP [dm6]	C	A	3.604e^-5	0.977	INTRON CG42540
X	22183757	X_22183757_SNP [dm3] X_22781921_SNP [dm6]	T	C	3.657e^-5	0.977	INTRON CR44997
X	22183781	X_22183781_SNP [dm3] X_22781945_SNP [dm6]	G	T	3.657e^-5	0.977	INTRON CR44997
3L	12101158	3L_12101158_SNP [dm3] 3L_12108058_SNP [dm6]	T	C	3.889e^-5	0.977	INTERGENIC
3L	6496300	3L_6496300_SNP [dm3] 3L_6503200_SNP [dm6]	G	A	3.889e^-5	0.977	INTRON sfl
2L	10433236	2L_10433236_SNP [dm3] 2L_10433236_SNP [dm6]	T	C	4.109e^-5	0.977	SYNONYMOUS_CODING CG5337 DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
3R	25095061	3R_25095061_SNP [dm3] 3R_29269339_SNP [dm6]	G	T	4.138e^-5	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7497347	3L_7497347_SNP [dm3] 3L_7504247_SNP [dm6]	T	C	4.228e^-5	0.977	INTERGENIC
2L	6939654	2L_6939654_SNP [dm3] 2L_6939654_SNP [dm6]	C	G	4.470e^-5	0.977	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	6913713	2L_6913713_SNP [dm3] 2L_6913713_SNP [dm6]	T	C	5.726e^-5	0.977	NON_SYNONYMOUS_CODING Wee1 DOWNSTREAM x16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12092116	3L_12092116_SNP [dm3] 3L_12099016_SNP [dm6]	G	A	5.782e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5277650	2L_5277650_SNP [dm3] 2L_5277650_SNP [dm6]	T	A	5.964e^-5	0.977	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8595693	3R_8595693_SNP [dm3] 3R_12769971_SNP [dm6]	T	A	5.971e^-5	0.977	INTRON beat-Vc
2R	10815229	2R_10815229_SNP [dm3] 2R_14927724_SNP [dm6]	A	T	6.125e^-5	0.977	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6492651	3L_6492651_SNP [dm3] 3L_6499551_SNP [dm6]	G	T	6.155e^-5	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	8860518	2L_8860518_SNP [dm3] 2L_8860518_SNP [dm6]	C	A	6.195e^-5	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11166732	2R_11166732_SNP [dm3] 2R_15279227_SNP [dm6]	T	A	6.425e^-5	0.977	INTRON Trpm
3R	5076943	3R_5076943_SNP [dm3] 3R_9251221_SNP [dm6]	T	C	6.842e^-5	0.977	SYNONYMOUS_CODING CG8420 UPSTREAM St2
X	3101524	X_3101524_SNP [dm3] X_3207491_SNP [dm6]	T	A	6.993e^-5	0.977	INTRON dnc
3L	7184580	3L_7184580_SNP [dm3] 3L_7191480_SNP [dm6]	T	A	7.096e^-5	0.977	INTERGENIC
2R	9639651	2R_9639651_SNP [dm3] 2R_13752146_SNP [dm6]	G	A	7.125e^-5	0.977	INTERGENIC
2R	21089904	2R_21089904_SNP [dm3] 2R_25202381_SNP [dm6]	C	T	7.206e^-5	0.977	INTRON CG9380	TF binding site mE1_TFBS_Kr
3L	12101279	3L_12101279_SNP [dm3] 3L_12108179_SNP [dm6]	A	G	7.264e^-5	0.977	INTERGENIC
3L	12101280	3L_12101280_SNP [dm3] 3L_12108180_SNP [dm6]	T	A	7.264e^-5	0.977	INTERGENIC
2R	11295779	2R_11295779_SNP [dm3] 2R_15408274_SNP [dm6]	G	T	7.287e^-5	0.977	UPSTREAM Mtk INTRON CG43729
3L	6496570	3L_6496570_SNP [dm3] 3L_6503470_SNP [dm6]	T	C	7.306e^-5	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	2747283	2L_2747283_SNP [dm3] 2L_2747283_SNP [dm6]	G	T	7.406e^-5	0.977	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23648862	3R_23648862_SNP [dm3] 3R_27823140_SNP [dm6]	A	G	7.427e^-5	0.977	INTRON CG34353
2L	12229711	2L_12229711_SNP [dm3] 2L_12229711_SNP [dm6]	C	T	7.577e^-5	0.977	INTRON aret
2R	9780252	2R_9780252_SNP [dm3] 2R_13892747_SNP [dm6]	C	T	7.658e^-5	0.977	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24766901	3R_24766901_SNP [dm3] 3R_28941179_SNP [dm6]	A	T	7.883e^-5	0.977	INTRON CG14521
2L	8284943	2L_8284943_SNP [dm3] 2L_8284943_SNP [dm6]	C	G	7.917e^-5	0.977	INTRON Btk29A	TF binding site mE1_TFBS_inv
3R	22065952	3R_22065952_SNP [dm3] 3R_26240230_SNP [dm6]	A	T	7.984e^-5	0.977	INTRON CR42745
2L	8962610	2L_8962610_SNP [dm3] 2L_8962610_SNP [dm6]	G	A	8.018e^-5	0.977	START_GAINED CG32985 UTR_5_PRIME CG32985 UPSTREAM CG9525
2L	5277357	2L_5277357_SNP [dm3] 2L_5277357_SNP [dm6]	T	A	8.092e^-5	0.977	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25449385	3R_25449385_SNP [dm3] 3R_29623663_SNP [dm6]	C	A	8.138e^-5	0.977	INTERGENIC
2R	15967220	2R_15967220_SNP [dm3] 2R_20079715_SNP [dm6]	T	A	8.147e^-5	0.977	INTERGENIC
2R	16937218	2R_16937218_SNP [dm3] 2R_21049713_SNP [dm6]	C	T	8.202e^-5	0.977	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14545272	2L_14545272_SNP [dm3] 2L_14545272_SNP [dm6]	G	A	8.290e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2185631	3L_2185631_SNP [dm3] 3L_2185631_SNP [dm6]	T	C	8.549e^-5	0.977	UPSTREAM CG13810 INTERGENIC
X	8777841	X_8777841_SNP [dm3] X_8883808_SNP [dm6]	C	A	8.792e^-5	0.977	INTRON Moe
3L	13053896	3L_13053896_SNP [dm3] 3L_13060796_SNP [dm6]	T	G	8.808e^-5	0.977	NON_SYNONYMOUS_CODING CG14115	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20560611	X_20560611_SNP [dm3] X_20689584_SNP [dm6]	C	T	8.894e^-5	0.977	DOWNSTREAM CR45610 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	20560612	X_20560612_SNP [dm3] X_20689585_SNP [dm6]	C	T	8.894e^-5	0.977	DOWNSTREAM CR45610 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	20713089	3R_20713089_SNP [dm3] 3R_24887367_SNP [dm6]	A	C	8.910e^-5	0.977	INTRON CG31121
3L	15324169	3L_15324169_SNP [dm3] 3L_15331069_SNP [dm6]	C	A	9.170e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25518762	3R_25518762_SNP [dm3] 3R_29693040_SNP [dm6]	C	T	9.207e^-5	0.977	SPLICE_SITE_REGION dmrt99B SYNONYMOUS_CODING dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	637326	2L_637326_SNP [dm3] 2L_637326_SNP [dm6]	T	C	9.307e^-5	0.977	INTERGENIC
2L	8860519	2L_8860519_SNP [dm3] 2L_8860519_SNP [dm6]	C	A	9.324e^-5	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14105959	3R_14105959_SNP [dm3] 3R_18280237_SNP [dm6]	A	G	9.389e^-5	0.977	UPSTREAM CG7142 INTRON eIF-1A
3R	20928899	3R_20928899_SNP [dm3] 3R_25103177_SNP [dm6]	C	A	9.425e^-5	0.977	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG34027	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1824678	3L_1824678_SNP [dm3] 3L_1824678_SNP [dm6]	G	T	9.677e^-5	0.977	SYNONYMOUS_CODING Cpr62Ba
3L	1599829	3L_1599829_SNP [dm3] 3L_1599829_SNP [dm6]	C	T	9.860e^-5	0.977	SYNONYMOUS_CODING CG13917 DOWNSTREAM CG12104	TF binding site mE1_TFBS_sens
2L	8833423	2L_8833423_SNP [dm3] 2L_8833423_SNP [dm6]	G	A	9.986e^-5	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8412947	3R_8412947_SNP [dm3] 3R_12587225_SNP [dm6]	C	A	1.009e^-4	0.977	INTRON Octbeta2R
2R	13358407	2R_13358407_SNP [dm3] 2R_17470902_SNP [dm6]	C	T	1.010e^-4	0.977	INTRON qkr54B
2R	11295777	2R_11295777_SNP [dm3] 2R_15408272_SNP [dm6]	C	A	1.011e^-4	0.977	UPSTREAM Mtk INTRON CG43729
2R	10859223	2R_10859223_INS [dm3] 2R_14971718_INS [dm6]	T	TG	1.034e^-4	0.977	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6305046	3L_6305046_SNP [dm3] 3L_6311946_SNP [dm6]	T	A	1.075e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19034683	3R_19034683_SNP [dm3] 3R_23208961_SNP [dm6]	T	C	1.075e^-4	0.977	INTRON cnc
2L	2648911	2L_2648911_SNP [dm3] 2L_2648911_SNP [dm6]	G	A	1.075e^-4	0.977	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
X	22184052	X_22184052_SNP [dm3] X_22782216_SNP [dm6]	T	C	1.098e^-4	0.977	INTRON CR44997
3L	604618	3L_604618_SNP [dm3] 3L_604618_SNP [dm6]	A	G	1.118e^-4	0.977	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9898626	3L_9898626_SNP [dm3] 3L_9905526_SNP [dm6]	A	C	1.126e^-4	0.977	INTERGENIC
3R	5961149	3R_5961149_SNP [dm3] 3R_10135427_SNP [dm6]	C	A	1.129e^-4	0.977	UPSTREAM tws INTRON tws	TF binding site BDTNP1_TFBS_da
2R	7111464	2R_7111464_SNP [dm3] 2R_11223959_SNP [dm6]	G	A	1.144e^-4	0.977	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2L	6360334	2L_6360334_SNP [dm3] 2L_6360334_SNP [dm6]	C	T	1.147e^-4	0.977	UPSTREAM CR44778 & 1 other INTERGENIC
3L	18969957	3L_18969957_INS [dm3] 3L_18976857_INS [dm6]	T	TGAAATAT	1.155e^-4	0.977	INTERGENIC
2R	18035988	2R_18035988_SNP [dm3] 2R_22148483_SNP [dm6]	G	T	1.177e^-4	0.977	INTRON a
2R	13441202	2R_13441202_SNP [dm3] 2R_17553697_SNP [dm6]	C	G	1.179e^-4	0.977	NON_SYNONYMOUS_CODING MESR4
3R	14839166	3R_14839166_SNP [dm3] 3R_19013444_SNP [dm6]	T	C	1.191e^-4	0.977	SYNONYMOUS_CODING gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	5921439	X_5921439_SNP [dm3] X_6027406_SNP [dm6]	A	G	1.193e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6496582	3L_6496582_SNP [dm3] 3L_6503482_SNP [dm6]	T	C	1.209e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6496589	3L_6496589_SNP [dm3] 3L_6503489_SNP [dm6]	A	G	1.209e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	16105424	3R_16105424_SNP [dm3] 3R_20279702_SNP [dm6]	G	A	1.217e^-4	0.977	INTRON cic
3R	25566472	3R_25566472_SNP [dm3] 3R_29740750_SNP [dm6]	C	G	1.217e^-4	0.977	SYNONYMOUS_CODING CG1969
2L	9689723	2L_9689723_SNP [dm3] 2L_9689723_SNP [dm6]	T	C	1.223e^-4	0.977	INTRON Pka-C1
3L	4185958	3L_4185958_SNP [dm3] 3L_4185958_SNP [dm6]	A	C	1.230e^-4	0.977	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
2L	21976892	2L_21976892_SNP [dm3] 2L_21976892_SNP [dm6]	C	G	1.243e^-4	0.977	INTERGENIC
X	12688823	X_12688823_SNP [dm3] X_12794790_SNP [dm6]	G	C	1.252e^-4	0.977	INTRON Pde9
3L	6430997	3L_6430997_SNP [dm3] 3L_6437897_SNP [dm6]	T	A	1.252e^-4	0.977	INTRON CG42747
3L	8638841	3L_8638841_SNP [dm3] 3L_8645741_SNP [dm6]	T	C	1.257e^-4	0.977	SPLICE_SITE_REGION CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18395525	2R_18395525_SNP [dm3] 2R_22508020_SNP [dm6]	G	T	1.266e^-4	0.977	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	11165036	2R_11165036_SNP [dm3] 2R_15277531_SNP [dm6]	G	A	1.268e^-4	0.977	INTRON Trpm
3R	13946927	3R_13946927_DEL [dm3] 3R_18121205_DEL [dm6]	TGCTCAACAACTT...	T	1.279e^-4	0.977	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3101376	X_3101376_SNP [dm3] X_3207343_SNP [dm6]	A	C	1.283e^-4	0.977	INTRON dnc
X	3101588	X_3101588_SNP [dm3] X_3207555_SNP [dm6]	T	A	1.298e^-4	0.977	INTRON dnc
2L	8625664	2L_8625664_SNP [dm3] 2L_8625664_SNP [dm6]	T	G	1.298e^-4	0.977	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3R	17650538	3R_17650538_SNP [dm3] 3R_21824816_SNP [dm6]	G	A	1.302e^-4	0.977	DOWNSTREAM CR45632 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	17358960	2R_17358960_SNP [dm3] 2R_21471455_SNP [dm6]	T	C	1.311e^-4	0.977	INTRON Sdc
2L	20229431	2L_20229431_SNP [dm3] 2L_20229431_SNP [dm6]	G	T	1.315e^-4	0.977	INTERGENIC
3R	5818976	3R_5818976_SNP [dm3] 3R_9993254_SNP [dm6]	T	C	1.344e^-4	0.977	UTR_3_PRIME Glut4EF
2R	19136265	2R_19136265_SNP [dm3] 2R_23248742_SNP [dm6]	C	T	1.352e^-4	0.977	UPSTREAM RpL22-like INTERGENIC
3L	6846703	3L_6846703_SNP [dm3] 3L_6853603_SNP [dm6]	A	T	1.390e^-4	0.977	INTERGENIC
2L	8861028	2L_8861028_SNP [dm3] 2L_8861028_SNP [dm6]	T	C	1.393e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10354699	3L_10354699_SNP [dm3] 3L_10361599_SNP [dm6]	T	A	1.410e^-4	0.977	EXON CR44327	TF binding site mE1_TFBS_cad
3R	23667846	3R_23667846_SNP [dm3] 3R_27842124_SNP [dm6]	G	C	1.426e^-4	0.977	INTRON CG34353
3R	17701839	3R_17701839_SNP [dm3] 3R_21876117_SNP [dm6]	T	G	1.437e^-4	0.977	INTRON CG6656
3R	17701840	3R_17701840_SNP [dm3] 3R_21876118_SNP [dm6]	A	G	1.437e^-4	0.977	INTRON CG6656
3L	11555481	3L_11555481_SNP [dm3] 3L_11562381_SNP [dm6]	T	C	1.447e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	25449579	3R_25449579_SNP [dm3] 3R_29623857_SNP [dm6]	T	G	1.449e^-4	0.977	INTERGENIC
3L	1598349	3L_1598349_SNP [dm3] 3L_1598349_SNP [dm6]	C	T	1.456e^-4	0.977	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15503591	3L_15503591_SNP [dm3] 3L_15510491_SNP [dm6]	T	G	1.463e^-4	0.977	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8705606	X_8705606_DEL [dm3] X_8811573_DEL [dm6]	TT	T	1.466e^-4	0.977	INTERGENIC
X	21303464	X_21303464_SNP [dm3] X_21432437_SNP [dm6]	A	T	1.472e^-4	0.977	INTRON CG42343
2L	10433266	2L_10433266_SNP [dm3] 2L_10433266_SNP [dm6]	C	T	1.497e^-4	0.977	SYNONYMOUS_CODING CG5337 DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
3L	15445065	3L_15445065_SNP [dm3] 3L_15451965_SNP [dm6]	A	T	1.512e^-4	0.977	INTERGENIC
2L	10843673	2L_10843673_SNP [dm3] 2L_10843673_SNP [dm6]	T	A	1.522e^-4	0.977	SPLICE_SITE_REGION CG17139 & 1 other INTRON CG17139 & 1 other
3L	12010769	3L_12010769_SNP [dm3] 3L_12017669_SNP [dm6]	A	G	1.531e^-4	0.977	INTRON rols
3R	7759926	3R_7759926_SNP [dm3] 3R_11934204_SNP [dm6]	T	A	1.581e^-4	0.977	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13647752	3R_13647752_SNP [dm3] 3R_17822030_SNP [dm6]	T	G	1.595e^-4	0.977	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11299254	2R_11299254_SNP [dm3] 2R_15411749_SNP [dm6]	G	T	1.599e^-4	0.977	INTRON CG43729
3L	4077433	3L_4077433_SNP [dm3] 3L_4077433_SNP [dm6]	G	C	1.601e^-4	0.977	INTRON Gad1
2L	6757282	2L_6757282_SNP [dm3] 2L_6757282_SNP [dm6]	T	A	1.619e^-4	0.977	DOWNSTREAM CG11322 INTERGENIC
2L	13111774	2L_13111774_SNP [dm3] 2L_13111774_SNP [dm6]	G	C	1.622e^-4	0.977	INTERGENIC
2R	21088384	2R_21088384_SNP [dm3] 2R_25200861_SNP [dm6]	G	T	1.643e^-4	0.977	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3074987	2R_3074987_SNP [dm3] 2R_7187482_SNP [dm6]	C	A	1.654e^-4	0.977	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	12101217	3L_12101217_SNP [dm3] 3L_12108117_SNP [dm6]	G	C	1.658e^-4	0.977	INTERGENIC
3L	16527662	3L_16527662_SNP [dm3] 3L_16534562_SNP [dm6]	T	C	1.666e^-4	0.977	INTRON CG43373	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5581636	3L_5581636_SNP [dm3] 3L_5588536_SNP [dm6]	G	A	1.669e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
3L	5581672	3L_5581672_SNP [dm3] 3L_5588572_SNP [dm6]	T	C	1.669e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
3L	5581757	3L_5581757_SNP [dm3] 3L_5588657_SNP [dm6]	T	G	1.669e^-4	0.977	NON_SYNONYMOUS_CODING l_3_psg2
2L	21976768	2L_21976768_INS [dm3] 2L_21976768_INS [dm6]	A	GTATGTAC	1.674e^-4	0.977	INTERGENIC
2R	16617227	2R_16617227_SNP [dm3] 2R_20729722_SNP [dm6]	A	T	1.677e^-4	0.977	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_twi
3L	21348163	3L_21348163_SNP [dm3] 3L_21355063_SNP [dm6]	T	G	1.680e^-4	0.977	DOWNSTREAM CG12971 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6757115	2L_6757115_SNP [dm3] 2L_6757115_SNP [dm6]	T	G	1.688e^-4	0.977	DOWNSTREAM CG11221 & 1 other INTERGENIC
3L	5582907	3L_5582907_SNP [dm3] 3L_5589807_SNP [dm6]	G	C	1.709e^-4	0.977	NON_SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
2R	1598068	2R_1598068_INS [dm3] 2R_5710563_INS [dm6]	A	AA	1.710e^-4	0.977	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9927548	3R_9927548_SNP [dm3] 3R_14101826_SNP [dm6]	A	G	1.734e^-4	0.977	INTRON PK1-R	TF binding site mE1_TFBS_cad
3L	12429198	3L_12429198_SNP [dm3] 3L_12436098_SNP [dm6]	T	C	1.748e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14048096	3L_14048096_SNP [dm3] 3L_14054996_SNP [dm6]	A	G	1.758e^-4	0.977	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9682482	X_9682482_SNP [dm3] X_9788449_SNP [dm6]	A	C	1.771e^-4	0.977	UTR_5_PRIME CG32698 UPSTREAM CG32698 INTRON CG32698
2R	7029831	2R_7029831_INS [dm3] 2R_11142326_INS [dm6]	A	AAA	1.785e^-4	0.977	INTRON CG13229
3R	12595193	3R_12595193_SNP [dm3] 3R_16769471_SNP [dm6]	C	T	1.797e^-4	0.977	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Ubx
3L	12076473	3L_12076473_SNP [dm3] 3L_12083373_SNP [dm6]	G	A	1.800e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12151121	2L_12151121_SNP [dm3] 2L_12151121_SNP [dm6]	A	G	1.824e^-4	0.977	INTRON CG31760
2L	8869737	2L_8869737_SNP [dm3] 2L_8869737_SNP [dm6]	A	T	1.842e^-4	0.977	DOWNSTREAM CR44414 INTERGENIC
3R	25449411	3R_25449411_SNP [dm3] 3R_29623689_SNP [dm6]	A	T	1.843e^-4	0.977	INTERGENIC
2R	17921819	2R_17921819_SNP [dm3] 2R_22034314_SNP [dm6]	C	T	1.852e^-4	0.977	UPSTREAM CG9308 INTRON CG34370
2L	15147104	2L_15147104_SNP [dm3] 2L_15147104_SNP [dm6]	A	C	1.852e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6840132	2L_6840132_SNP [dm3] 2L_6840132_SNP [dm6]	A	G	1.858e^-4	0.977	INTERGENIC
2L	6154105	2L_6154105_DEL [dm3] 2L_6154105_DEL [dm6]	TG	A	1.879e^-4	0.977	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_HSA
3L	13711408	3L_13711408_SNP [dm3] 3L_13718308_SNP [dm6]	C	A	1.883e^-4	0.977	INTRON bru-3
3L	12092029	3L_12092029_SNP [dm3] 3L_12098929_SNP [dm6]	T	A	1.888e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2698458	3L_2698458_SNP [dm3] 3L_2698458_SNP [dm6]	G	A	1.892e^-4	0.977	INTRON Fife
X	20525622	X_20525622_SNP [dm3] X_20654595_SNP [dm6]	C	T	1.895e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8860944	2L_8860944_SNP [dm3] 2L_8860944_SNP [dm6]	T	C	1.940e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16948766	2R_16948766_SNP [dm3] 2R_21061261_SNP [dm6]	G	T	1.941e^-4	0.977	UPSTREAM CG15653 & 1 other INTRON mRpL54
2R	11538645	2R_11538645_SNP [dm3] 2R_15651140_SNP [dm6]	T	C	1.953e^-4	0.977	DOWNSTREAM CG42524 INTRON CG42524
2L	19294954	2L_19294954_SNP [dm3] 2L_19294954_SNP [dm6]	A	G	1.953e^-4	0.977	INTERGENIC
2L	8860515	2L_8860515_SNP [dm3] 2L_8860515_SNP [dm6]	T	C	1.968e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5388072	2R_5388072_SNP [dm3] 2R_9500567_SNP [dm6]	G	A	1.976e^-4	0.977	INTRON Wnt2
3L	8866730	3L_8866730_SNP [dm3] 3L_8873630_SNP [dm6]	G	A	1.977e^-4	0.977	INTRON dally
2L	18757361	2L_18757361_SNP [dm3] 2L_18757361_SNP [dm6]	T	C	1.981e^-4	0.977	INTERGENIC
3L	13953433	3L_13953433_INS [dm3] 3L_13960333_INS [dm6]	A	TGG	1.996e^-4	0.977	INTRON CG32137
3L	13326179	3L_13326179_SNP [dm3] 3L_13333079_SNP [dm6]	G	T	2.014e^-4	0.977	INTERGENIC
3L	5582008	3L_5582008_SNP [dm3] 3L_5588908_SNP [dm6]	C	T	2.018e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
3R	22079919	3R_22079919_SNP [dm3] 3R_26254197_SNP [dm6]	T	C	2.023e^-4	0.977	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	22080069	3R_22080069_SNP [dm3] 3R_26254347_SNP [dm6]	G	C	2.023e^-4	0.977	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_zfh1
2R	10618349	2R_10618349_SNP [dm3] 2R_14730844_SNP [dm6]	G	A	2.033e^-4	0.977	INTERGENIC
2L	1978570	2L_1978570_SNP [dm3] 2L_1978570_SNP [dm6]	T	G	2.047e^-4	0.977	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1745870	3L_1745870_SNP [dm3] 3L_1745870_SNP [dm6]	G	T	2.048e^-4	0.977	DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	21976772	2L_21976772_SNP [dm3] 2L_21976772_SNP [dm6]	T	C	2.051e^-4	0.977	INTERGENIC
X	19721147	X_19721147_SNP [dm3] X_19827114_SNP [dm6]	A	G	2.056e^-4	0.977	INTERGENIC
2L	10703063	2L_10703063_SNP [dm3] 2L_10703063_SNP [dm6]	A	T	2.060e^-4	0.977	UPSTREAM CG6415 INTRON Lip2
2R	7114493	2R_7114493_SNP [dm3] 2R_11226988_SNP [dm6]	C	T	2.070e^-4	0.977	UTR_3_PRIME metro DOWNSTREAM CG7737	TF binding site mE1_TFBS_cad
X	5075109	X_5075109_SNP [dm3] X_5181076_SNP [dm6]	G	C	2.078e^-4	0.977	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other	TF binding site mE1_TFBS_HSA
3R	5771597	3R_5771597_SNP [dm3] 3R_9945875_SNP [dm6]	A	T	2.106e^-4	0.977	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22079994	3R_22079994_SNP [dm3] 3R_26254272_SNP [dm6]	C	T	2.119e^-4	0.977	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6492794	3L_6492794_SNP [dm3] 3L_6499694_SNP [dm6]	A	C	2.133e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6492806	3L_6492806_SNP [dm3] 3L_6499706_SNP [dm6]	T	C	2.133e^-4	0.977	INTRON sfl
2L	6452488	2L_6452488_SNP [dm3] 2L_6452488_SNP [dm6]	T	G	2.148e^-4	0.977	SYNONYMOUS_CODING retm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24750058	3R_24750058_SNP [dm3] 3R_28924336_SNP [dm6]	T	C	2.151e^-4	0.977	SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	11942550	3R_11942550_SNP [dm3] 3R_16116828_SNP [dm6]	G	A	2.175e^-4	0.977	INTRON Sb
3R	11942573	3R_11942573_SNP [dm3] 3R_16116851_SNP [dm6]	A	G	2.175e^-4	0.977	INTRON Sb
X	7973001	X_7973001_SNP [dm3] X_8078968_SNP [dm6]	T	G	2.189e^-4	0.977	DOWNSTREAM CG1571 INTRON CG2254
2R	9326433	2R_9326433_SNP [dm3] 2R_13438928_SNP [dm6]	A	G	2.191e^-4	0.977	SPLICE_SITE_REGION CG42321 UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13135940	2L_13135940_SNP [dm3] 2L_13135940_SNP [dm6]	C	T	2.214e^-4	0.977	INTERGENIC
3R	26922983	3R_26922983_INS [dm3] 3R_31097261_INS [dm6]	G	GATAAGCGAAGTCG...	2.216e^-4	0.977	UTR_5_PRIME CG11317
3R	10421840	3R_10421840_SNP [dm3] 3R_14596118_SNP [dm6]	C	A	2.226e^-4	0.977	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
2R	16418712	2R_16418712_SNP [dm3] 2R_20531207_SNP [dm6]	C	A	2.237e^-4	0.977	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17277115	X_17277115_SNP [dm3] X_17383082_SNP [dm6]	T	G	2.237e^-4	0.977	INTERGENIC
3L	1885869	3L_1885869_SNP [dm3] 3L_1885869_SNP [dm6]	A	G	2.242e^-4	0.977	UPSTREAM Aprt INTRON Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	12092063	3L_12092063_DEL [dm3] 3L_12098963_DEL [dm6]	AATAT	A	2.246e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12092073	3L_12092073_SNP [dm3] 3L_12098973_SNP [dm6]	T	C	2.246e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12092077	3L_12092077_SNP [dm3] 3L_12098977_SNP [dm6]	A	C	2.246e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11838625	3L_11838625_SNP [dm3] 3L_11845525_SNP [dm6]	C	A	2.259e^-4	0.977	INTERGENIC
X	2392192	X_2392192_SNP [dm3] X_2498159_SNP [dm6]	A	G	2.260e^-4	0.977	INTRON trol
3L	15777783	3L_15777783_SNP [dm3] 3L_15784683_SNP [dm6]	T	C	2.266e^-4	0.977	INTERGENIC
3L	16773939	3L_16773939_SNP [dm3] 3L_16780839_SNP [dm6]	C	T	2.268e^-4	0.977	INTRON CG9705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11555532	3L_11555532_SNP [dm3] 3L_11562432_SNP [dm6]	T	C	2.270e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	9757819	2R_9757819_SNP [dm3] 2R_13870314_SNP [dm6]	A	G	2.271e^-4	0.977	INTRON shot
2R	9757835	2R_9757835_SNP [dm3] 2R_13870330_SNP [dm6]	G	C	2.271e^-4	0.977	SPLICE_SITE_REGION shot INTRON shot
3L	21348190	3L_21348190_SNP [dm3] 3L_21355090_SNP [dm6]	G	A	2.273e^-4	0.977	DOWNSTREAM CG12971 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10421781	3R_10421781_SNP [dm3] 3R_14596059_SNP [dm6]	G	A	2.277e^-4	0.977	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
2R	21094723	2R_21094723_SNP [dm3] 2R_25207200_SNP [dm6]	A	T	2.288e^-4	0.977	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17701872	3R_17701872_SNP [dm3] 3R_21876150_SNP [dm6]	A	G	2.296e^-4	0.977	INTRON CG6656
3L	6492744	3L_6492744_SNP [dm3] 3L_6499644_SNP [dm6]	A	T	2.300e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	16633843	2R_16633843_SNP [dm3] 2R_20746338_SNP [dm6]	G	A	2.301e^-4	0.977	INTRON dpr
2L	5407332	2L_5407332_SNP [dm3] 2L_5407332_SNP [dm6]	G	C	2.314e^-4	0.977	SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19090872	3L_19090872_SNP [dm3] 3L_19097772_SNP [dm6]	T	C	2.315e^-4	0.977	UPSTREAM CG14079 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	9758069	2R_9758069_SNP [dm3] 2R_13870564_SNP [dm6]	C	T	2.315e^-4	0.977	SYNONYMOUS_CODING shot
X	21303415	X_21303415_SNP [dm3] X_21432388_SNP [dm6]	C	T	2.317e^-4	0.977	INTRON CG42343
X	4290565	X_4290565_SNP [dm3] X_4396532_SNP [dm6]	T	C	2.334e^-4	0.977	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11338507	3L_11338507_SNP [dm3] 3L_11345407_SNP [dm6]	G	T	2.345e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6431026	3L_6431026_SNP [dm3] 3L_6437926_SNP [dm6]	C	A	2.352e^-4	0.977	INTRON CG42747
3R	20845452	3R_20845452_SNP [dm3] 3R_25019730_SNP [dm6]	A	G	2.372e^-4	0.977	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19884624	2L_19884624_SNP [dm3] 2L_19884624_SNP [dm6]	G	T	2.379e^-4	0.977	INTRON sick
2R	1749649	2R_1749649_SNP [dm3] 2R_5862144_SNP [dm6]	A	T	2.385e^-4	0.977	INTERGENIC
2L	1601964	2L_1601964_SNP [dm3] 2L_1601964_SNP [dm6]	C	T	2.387e^-4	0.977	INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
3R	22080032	3R_22080032_SNP [dm3] 3R_26254310_SNP [dm6]	T	A	2.389e^-4	0.977	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_zfh1
3L	10996361	3L_10996361_SNP [dm3] 3L_11003261_SNP [dm6]	G	T	2.403e^-4	0.977	INTRON klu
3R	5050425	3R_5050425_SNP [dm3] 3R_9224703_SNP [dm6]	G	A	2.407e^-4	0.977	INTRON pum
3L	2814763	3L_2814763_SNP [dm3] 3L_2814763_SNP [dm6]	C	G	2.407e^-4	0.977	INTRON CG43444
3L	19081037	3L_19081037_SNP [dm3] 3L_19087937_SNP [dm6]	G	C	2.428e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	19094768	3L_19094768_SNP [dm3] 3L_19101668_SNP [dm6]	A	C	2.434e^-4	0.977	INTERGENIC
3L	19094774	3L_19094774_SNP [dm3] 3L_19101674_SNP [dm6]	A	G	2.434e^-4	0.977	INTERGENIC
X	12217440	X_12217440_SNP [dm3] X_12323407_SNP [dm6]	G	C	2.438e^-4	0.977	INTRON Ten-a
3R	22065935	3R_22065935_SNP [dm3] 3R_26240213_SNP [dm6]	A	T	2.458e^-4	0.977	INTRON CR42745
3R	9927504	3R_9927504_SNP [dm3] 3R_14101782_SNP [dm6]	G	A	2.462e^-4	0.977	INTRON PK1-R	TF binding site mE1_TFBS_cad
3L	2182720	3L_2182720_SNP [dm3] 3L_2182720_SNP [dm6]	G	A	2.469e^-4	0.977	INTERGENIC
2L	11209818	2L_11209818_SNP [dm3] 2L_11209818_SNP [dm6]	G	A	2.473e^-4	0.977	UPSTREAM ab INTERGENIC
3L	11555414	3L_11555414_SNP [dm3] 3L_11562314_SNP [dm6]	G	A	2.477e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	17054873	3R_17054873_SNP [dm3] 3R_21229151_SNP [dm6]	A	T	2.478e^-4	0.977	UTR_3_PRIME Nelf-A DOWNSTREAM e
X	21305431	X_21305431_SNP [dm3] X_21434404_SNP [dm6]	C	T	2.483e^-4	0.977	INTRON CG42343	transposable element FlyBase
2R	12119097	2R_12119097_SNP [dm3] 2R_16231592_SNP [dm6]	A	C	2.489e^-4	0.977	NON_SYNONYMOUS_CODING CG15701 UPSTREAM CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12119119	2R_12119119_SNP [dm3] 2R_16231614_SNP [dm6]	G	A	2.489e^-4	0.977	SYNONYMOUS_CODING CG15701 UPSTREAM CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7385556	3L_7385556_SNP [dm3] 3L_7392456_SNP [dm6]	G	C	2.496e^-4	0.977	INTRON CG8563
3L	1253135	3L_1253135_SNP [dm3] 3L_1253135_SNP [dm6]	C	A	2.508e^-4	0.977	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7098716	2R_7098716_SNP [dm3] 2R_11211211_SNP [dm6]	C	T	2.510e^-4	0.977	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10703210	2L_10703210_SNP [dm3] 2L_10703210_SNP [dm6]	T	G	2.528e^-4	0.977	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3L	10422552	3L_10422552_SNP [dm3] 3L_10429452_SNP [dm6]	G	C	2.530e^-4	0.977	DOWNSTREAM Ir67b INTERGENIC
3L	15382607	3L_15382607_SNP [dm3] 3L_15389507_SNP [dm6]	A	C	2.538e^-4	0.977	INTERGENIC
3L	1879645	3L_1879645_SNP [dm3] 3L_1879645_SNP [dm6]	T	C	2.542e^-4	0.977	INTRON CG13937
3R	10421786	3R_10421786_SNP [dm3] 3R_14596064_SNP [dm6]	A	T	2.547e^-4	0.977	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl
3L	12092076	3L_12092076_SNP [dm3] 3L_12098976_SNP [dm6]	A	G	2.551e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6294894	3L_6294894_SNP [dm3] 3L_6301794_SNP [dm6]	T	C	2.552e^-4	0.977	DOWNSTREAM CR45420 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7111587	2R_7111587_SNP [dm3] 2R_11224082_SNP [dm6]	A	C	2.581e^-4	0.977	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2R	11301095	2R_11301095_SNP [dm3] 2R_15413590_SNP [dm6]	T	C	2.583e^-4	0.977	INTRON CG43729
2R	11301097	2R_11301097_SNP [dm3] 2R_15413592_SNP [dm6]	A	G	2.583e^-4	0.977	INTRON CG43729
3R	25532537	3R_25532537_SNP [dm3] 3R_29706815_SNP [dm6]	G	A	2.590e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14700627	3R_14700627_SNP [dm3] 3R_18874905_SNP [dm6]	G	A	2.599e^-4	0.977	UPSTREAM CG14298 INTERGENIC
2L	14355839	2L_14355839_SNP [dm3] 2L_14355839_SNP [dm6]	C	T	2.603e^-4	0.977	UPSTREAM l_2_34Fd INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27489322	3R_27489322_SNP [dm3] 3R_31663600_SNP [dm6]	C	T	2.626e^-4	0.977	UTR_3_PRIME kek6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6458824	2L_6458824_SNP [dm3] 2L_6458824_SNP [dm6]	G	A	2.629e^-4	0.977	UTR_3_PRIME frj DOWNSTREAM CG16947
X	20367020	X_20367020_SNP [dm3] X_20495993_SNP [dm6]	C	T	2.642e^-4	0.977	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1601963	2L_1601963_SNP [dm3] 2L_1601963_SNP [dm6]	C	T	2.647e^-4	0.977	INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
2L	1601977	2L_1601977_SNP [dm3] 2L_1601977_SNP [dm6]	T	C	2.647e^-4	0.977	INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
2L	1261894	2L_1261894_SNP [dm3] 2L_1261894_SNP [dm6]	T	A	2.650e^-4	0.977	INTRON robo3
2L	8833468	2L_8833468_SNP [dm3] 2L_8833468_SNP [dm6]	T	G	2.671e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8833494	2L_8833494_SNP [dm3] 2L_8833494_SNP [dm6]	A	T	2.671e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	970521	2L_970521_SNP [dm3] 2L_970521_SNP [dm6]	A	T	2.689e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	970528	2L_970528_INS [dm3] 2L_970528_INS [dm6]	G	GCATTCCAGTTTTGA...	2.689e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19405078	3L_19405078_SNP [dm3] 3L_19411978_SNP [dm6]	T	C	2.690e^-4	0.977	INTRON CG32206
3R	13590817	3R_13590817_SNP [dm3] 3R_17765095_SNP [dm6]	C	T	2.695e^-4	0.977	INTERGENIC
3L	16543046	3L_16543046_SNP [dm3] 3L_16549946_SNP [dm6]	G	A	2.699e^-4	0.977	INTERGENIC
2L	10703423	2L_10703423_SNP [dm3] 2L_10703423_SNP [dm6]	A	C	2.705e^-4	0.977	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8909689	3L_8909689_DEL [dm3] 3L_8916589_DEL [dm6]	CTTGAGCAAACCAC...	C	2.730e^-4	0.977	DOWNSTREAM CR43970 INTRON Tsp66E
3L	7497396	3L_7497396_SNP [dm3] 3L_7504296_SNP [dm6]	C	T	2.732e^-4	0.977	INTERGENIC
3L	12081428	3L_12081428_SNP [dm3] 3L_12088328_SNP [dm6]	C	G	2.743e^-4	0.977	UPSTREAM CG17154 INTERGENIC
2R	10630551	2R_10630551_SNP [dm3] 2R_14743046_SNP [dm6]	T	C	2.744e^-4	0.977	SPLICE_SITE_REGION CG12858 INTRON CG12858	TF binding site mE1_TFBS_cad
3L	5582002	3L_5582002_SNP [dm3] 3L_5588902_SNP [dm6]	T	C	2.748e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
3L	16527674	3L_16527674_SNP [dm3] 3L_16534574_SNP [dm6]	A	G	2.755e^-4	0.977	INTRON CG43373	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16527686	3L_16527686_SNP [dm3] 3L_16534586_SNP [dm6]	C	A	2.755e^-4	0.977	INTRON CG43373	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16527704	3L_16527704_SNP [dm3] 3L_16534604_SNP [dm6]	A	C	2.755e^-4	0.977	INTRON CG43373	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4321830	2L_4321830_SNP [dm3] 2L_4321830_SNP [dm6]	G	A	2.757e^-4	0.977	UTR_3_PRIME tutl DOWNSTREAM tutl
3L	19095356	3L_19095356_SNP [dm3] 3L_19102256_SNP [dm6]	G	A	2.776e^-4	0.977	INTERGENIC
2L	11837084	2L_11837084_SNP [dm3] 2L_11837084_SNP [dm6]	T	G	2.786e^-4	0.977	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11141533	2L_11141533_SNP [dm3] 2L_11141533_SNP [dm6]	G	T	2.800e^-4	0.977	SYNONYMOUS_CODING Gyc32E
2L	12204729	2L_12204729_SNP [dm3] 2L_12204729_SNP [dm6]	A	G	2.802e^-4	0.977	INTRON aret
3L	16565487	3L_16565487_SNP [dm3] 3L_16572387_SNP [dm6]	A	G	2.811e^-4	0.977	UTR_5_PRIME Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	4725131	3L_4725131_SNP [dm3] 3L_4725131_SNP [dm6]	A	T	2.834e^-4	0.977	INTRON RhoGEF64C
3L	21479963	3L_21479963_SNP [dm3] 3L_21486863_SNP [dm6]	T	G	2.844e^-4	0.977	INTRON Neu2	transposable element FlyBase
2R	11166711	2R_11166711_SNP [dm3] 2R_15279206_SNP [dm6]	T	C	2.849e^-4	0.977	INTRON Trpm
3L	20492803	3L_20492803_SNP [dm3] 3L_20499703_SNP [dm6]	A	G	2.850e^-4	0.977	UPSTREAM CG18281 INTRON CG32425
3L	11556107	3L_11556107_SNP [dm3] 3L_11563007_SNP [dm6]	C	T	2.871e^-4	0.977	SYNONYMOUS_CODING CG7394 UPSTREAM Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12657020	X_12657020_SNP [dm3] X_12762987_SNP [dm6]	A	G	2.878e^-4	0.977	SYNONYMOUS_CODING CG12717	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16105535	3R_16105535_SNP [dm3] 3R_20279813_SNP [dm6]	G	A	2.888e^-4	0.977	INTRON cic
3R	12558961	3R_12558961_SNP [dm3] 3R_16733239_SNP [dm6]	G	A	2.906e^-4	0.977	SYNONYMOUS_CODING Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9780315	2R_9780315_SNP [dm3] 2R_13892810_SNP [dm6]	A	G	2.910e^-4	0.977	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10286922	2R_10286922_SNP [dm3] 2R_14399417_SNP [dm6]	C	T	2.920e^-4	0.977	INTERGENIC
X	20364934	X_20364934_INS [dm3] X_20493907_INS [dm6]	T	TATA	2.939e^-4	0.977	INTRON RhoGAP19D
X	20364935	X_20364935_DEL [dm3] X_20493908_DEL [dm6]	TC	T	2.939e^-4	0.977	INTRON RhoGAP19D
2L	15437622	2L_15437622_SNP [dm3] 2L_15437622_SNP [dm6]	A	T	2.980e^-4	0.977	INTERGENIC
X	21305457	X_21305457_SNP [dm3] X_21434430_SNP [dm6]	C	T	2.982e^-4	0.977	INTRON CG42343	transposable element FlyBase
X	21305458	X_21305458_DEL [dm3] X_21434431_DEL [dm6]	TGCCTGTTATATACTTTTC...	T	2.982e^-4	0.977	INTRON CG42343	transposable element FlyBase
X	21305321	X_21305321_DEL [dm3] X_21434294_DEL [dm6]	AT	C	2.996e^-4	0.977	INTRON CG42343	transposable element FlyBase
X	21305388	X_21305388_SNP [dm3] X_21434361_SNP [dm6]	A	T	2.996e^-4	0.977	INTRON CG42343	transposable element FlyBase
3R	19602403	3R_19602403_SNP [dm3] 3R_23776681_SNP [dm6]	G	A	2.997e^-4	0.977	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19602660	3R_19602660_SNP [dm3] 3R_23776938_SNP [dm6]	A	G	2.997e^-4	0.977	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96
X	20360056	X_20360056_SNP [dm3] X_20489029_SNP [dm6]	T	C	3.002e^-4	0.977	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2L	8833444	2L_8833444_SNP [dm3] 2L_8833444_SNP [dm6]	T	G	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8833478	2L_8833478_SNP [dm3] 2L_8833478_SNP [dm6]	C	T	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8833484	2L_8833484_SNP [dm3] 2L_8833484_SNP [dm6]	C	G	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8833489	2L_8833489_SNP [dm3] 2L_8833489_SNP [dm6]	T	A	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8833557	2L_8833557_SNP [dm3] 2L_8833557_SNP [dm6]	A	T	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	8833559	2L_8833559_SNP [dm3] 2L_8833559_SNP [dm6]	T	C	3.008e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna
2R	11166724	2R_11166724_DEL [dm3] 2R_15279219_DEL [dm6]	TA	C	3.019e^-4	0.977	INTRON Trpm
2L	7249335	2L_7249335_SNP [dm3] 2L_7249335_SNP [dm6]	C	T	3.021e^-4	0.977	UTR_5_PRIME Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3914030	3L_3914030_SNP [dm3] 3L_3914030_SNP [dm6]	A	C	3.028e^-4	0.977	INTRON Eip63F-1
3R	10162413	3R_10162413_SNP [dm3] 3R_14336691_SNP [dm6]	G	A	3.030e^-4	0.977	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	6492909	3L_6492909_SNP [dm3] 3L_6499809_SNP [dm6]	A	G	3.031e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12200000	X_12200000_DEL [dm3] X_12305967_DEL [dm6]	CTGTGC	C	3.032e^-4	0.977	INTRON Ten-a
2L	18757269	2L_18757269_SNP [dm3] 2L_18757269_SNP [dm6]	G	A	3.036e^-4	0.977	INTERGENIC
2L	18757389	2L_18757389_SNP [dm3] 2L_18757389_SNP [dm6]	T	G	3.036e^-4	0.977	INTERGENIC
3L	11555465	3L_11555465_SNP [dm3] 3L_11562365_SNP [dm6]	T	A	3.040e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555467	3L_11555467_SNP [dm3] 3L_11562367_SNP [dm6]	T	A	3.040e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	2443328	3L_2443328_SNP [dm3] 3L_2443328_SNP [dm6]	T	C	3.045e^-4	0.977	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2648875	2L_2648875_SNP [dm3] 2L_2648875_SNP [dm6]	A	G	3.054e^-4	0.977	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
2R	4391419	2R_4391419_SNP [dm3] 2R_8503914_SNP [dm6]	C	T	3.066e^-4	0.977	INTRON mtt
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	3.067e^-4	0.977	INTRON Gycbeta100B
3R	19602349	3R_19602349_SNP [dm3] 3R_23776627_SNP [dm6]	T	G	3.078e^-4	0.977	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19270375	3R_19270375_SNP [dm3] 3R_23444653_SNP [dm6]	T	C	3.088e^-4	0.977	INTRON CG4374
X	14189461	X_14189461_INS [dm3] X_14295428_INS [dm6]	T	TCCT	3.099e^-4	0.977	INTERGENIC
3R	25449932	3R_25449932_SNP [dm3] 3R_29624210_SNP [dm6]	G	A	3.109e^-4	0.977	INTERGENIC
2L	4062846	2L_4062846_SNP [dm3] 2L_4062846_SNP [dm6]	G	A	3.121e^-4	0.977	INTRON ed
X	11357225	X_11357225_SNP [dm3] X_11463192_SNP [dm6]	G	A	3.127e^-4	0.977	INTRON CG43155
3L	2419495	3L_2419495_SNP [dm3] 3L_2419495_SNP [dm6]	A	T	3.128e^-4	0.977	INTRON CG45186
2R	19777913	2R_19777913_SNP [dm3] 2R_23890390_SNP [dm6]	G	A	3.133e^-4	0.977	UPSTREAM DNA-ligI & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	9231454	2L_9231454_SNP [dm3] 2L_9231454_SNP [dm6]	T	C	3.145e^-4	0.977	INTRON tai
3L	2290533	3L_2290533_SNP [dm3] 3L_2290533_SNP [dm6]	A	T	3.151e^-4	0.977	INTRON MsR2
3L	5583169	3L_5583169_SNP [dm3] 3L_5590069_SNP [dm6]	T	A	3.158e^-4	0.977	UTR_3_PRIME l_3_psg2 DOWNSTREAM spo
3L	5581750	3L_5581750_SNP [dm3] 3L_5588650_SNP [dm6]	A	T	3.161e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
2R	11165145	2R_11165145_DEL [dm3] 2R_15277640_DEL [dm6]	AA	A	3.174e^-4	0.977	INTRON Trpm
3L	6430144	3L_6430144_SNP [dm3] 3L_6437044_SNP [dm6]	C	T	3.179e^-4	0.977	INTRON CG42747
3L	10384607	3L_10384607_SNP [dm3] 3L_10391507_SNP [dm6]	G	T	3.192e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22079993	3R_22079993_SNP [dm3] 3R_26254271_SNP [dm6]	A	G	3.197e^-4	0.977	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13060811	3L_13060811_SNP [dm3] 3L_13067711_SNP [dm6]	T	G	3.218e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	1976971	2L_1976971_SNP [dm3] 2L_1976971_SNP [dm6]	A	G	3.227e^-4	0.977	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2786005	2L_2786005_SNP [dm3] 2L_2786005_SNP [dm6]	A	T	3.237e^-4	0.977	INTRON Syt1
3L	11002755	3L_11002755_SNP [dm3] 3L_11009655_SNP [dm6]	A	G	3.244e^-4	0.977	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10822361	2R_10822361_SNP [dm3] 2R_14934856_SNP [dm6]	A	G	3.249e^-4	0.977	UTR_5_PRIME CG10253 UPSTREAM Lap1 DOWNSTREAM CG12853	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	11532996	2R_11532996_SNP [dm3] 2R_15645491_SNP [dm6]	T	G	3.257e^-4	0.977	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
2R	10328269	2R_10328269_SNP [dm3] 2R_14440764_SNP [dm6]	C	A	3.261e^-4	0.977	INTRON Oaz	TF binding site mE1_TFBS_chinmo
3L	1745486	3L_1745486_SNP [dm3] 3L_1745486_SNP [dm6]	A	G	3.273e^-4	0.977	DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
3L	14622471	3L_14622471_SNP [dm3] 3L_14629371_SNP [dm6]	C	T	3.274e^-4	0.977	NON_SYNONYMOUS_CODING RecQ5 UTR_3_PRIME RecQ5
2L	21975102	2L_21975102_SNP [dm3] 2L_21975102_SNP [dm6]	T	C	3.284e^-4	0.977	INTERGENIC
3L	9898686	3L_9898686_SNP [dm3] 3L_9905586_SNP [dm6]	T	G	3.286e^-4	0.977	INTERGENIC
3L	6430535	3L_6430535_SNP [dm3] 3L_6437435_SNP [dm6]	T	C	3.288e^-4	0.977	INTRON CG42747
2R	16593334	2R_16593334_DEL [dm3] 2R_20705829_DEL [dm6]	TGCTGTGTGT	T	3.292e^-4	0.977	INTRON dpr
3R	20355250	3R_20355250_SNP [dm3] 3R_24529528_SNP [dm6]	C	T	3.293e^-4	0.977	DOWNSTREAM CG13623 INTRON CG6607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20355287	3R_20355287_SNP [dm3] 3R_24529565_SNP [dm6]	T	C	3.293e^-4	0.977	SPLICE_SITE_REGION CG6607 SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13623	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20355582	3R_20355582_SNP [dm3] 3R_24529860_SNP [dm6]	C	T	3.293e^-4	0.977	SYNONYMOUS_CODING CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2581055	3L_2581055_SNP [dm3] 3L_2581055_SNP [dm6]	G	A	3.297e^-4	0.977	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10850916	X_10850916_SNP [dm3] X_10956883_SNP [dm6]	G	A	3.310e^-4	0.977	INTRON Myo10A
3R	16033808	3R_16033808_SNP [dm3] 3R_20208086_SNP [dm6]	T	C	3.324e^-4	0.977	DOWNSTREAM CG17199 INTRON Nlg4
2L	6871517	2L_6871517_SNP [dm3] 2L_6871517_SNP [dm6]	A	T	3.329e^-4	0.977	INTRON CR44915
2L	4859506	2L_4859506_SNP [dm3] 2L_4859506_SNP [dm6]	T	A	3.336e^-4	0.977	INTRON pog
2L	3831324	2L_3831324_SNP [dm3] 2L_3831324_SNP [dm6]	A	G	3.337e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	23666752	3R_23666752_SNP [dm3] 3R_27841030_SNP [dm6]	G	T	3.343e^-4	0.977	INTRON CG34353
3L	6846685	3L_6846685_SNP [dm3] 3L_6853585_SNP [dm6]	T	C	3.347e^-4	0.977	INTERGENIC
X	7234591	X_7234591_SNP [dm3] X_7340558_SNP [dm6]	T	C	3.349e^-4	0.977	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	7234592	X_7234592_SNP [dm3] X_7340559_SNP [dm6]	C	G	3.349e^-4	0.977	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	5198639	2L_5198639_SNP [dm3] 2L_5198639_SNP [dm6]	T	C	3.350e^-4	0.977	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	15502629	3L_15502629_SNP [dm3] 3L_15509529_SNP [dm6]	T	C	3.354e^-4	0.977	UTR_5_PRIME gdl-ORF39 & 1 other UPSTREAM gdl DOWNSTREAM Z600	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15503625	3L_15503625_SNP [dm3] 3L_15510525_SNP [dm6]	G	A	3.354e^-4	0.977	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13127765	2L_13127765_SNP [dm3] 2L_13127765_SNP [dm6]	C	G	3.355e^-4	0.977	INTERGENIC
3R	22065962	3R_22065962_SNP [dm3] 3R_26240240_SNP [dm6]	C	T	3.364e^-4	0.977	INTRON CR42745
3L	19094837	3L_19094837_SNP [dm3] 3L_19101737_SNP [dm6]	T	C	3.367e^-4	0.977	INTERGENIC
X	14764073	X_14764073_SNP [dm3] X_14870040_SNP [dm6]	G	A	3.368e^-4	0.977	INTRON Flo2 & 1 other
X	14764078	X_14764078_SNP [dm3] X_14870045_SNP [dm6]	G	A	3.368e^-4	0.977	INTRON Flo2 & 1 other
2R	11538648	2R_11538648_SNP [dm3] 2R_15651143_SNP [dm6]	G	A	3.395e^-4	0.977	DOWNSTREAM CG42524 INTRON CG42524
3R	6365320	3R_6365320_SNP [dm3] 3R_10539598_SNP [dm6]	T	C	3.402e^-4	0.977	INTRON hth	TF binding site mE1_TFBS_cad
3L	6288956	3L_6288956_SNP [dm3] 3L_6295856_SNP [dm6]	T	C	3.411e^-4	0.977	INTERGENIC
3R	16756786	3R_16756786_SNP [dm3] 3R_20931064_SNP [dm6]	T	A	3.413e^-4	0.977	INTRON CG31191
3R	22286805	3R_22286805_SNP [dm3] 3R_26461083_SNP [dm6]	G	A	3.422e^-4	0.977	UPSTREAM CG5455 DOWNSTREAM CG14238 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7824541	3R_7824541_SNP [dm3] 3R_11998819_SNP [dm6]	G	A	3.435e^-4	0.977	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12102044	2L_12102044_SNP [dm3] 2L_12102044_SNP [dm6]	C	T	3.436e^-4	0.977	SYNONYMOUS_CODING Patsas	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	3.439e^-4	0.977	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4478035	X_4478035_SNP [dm3] X_4584002_SNP [dm6]	T	A	3.439e^-4	0.977	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12101883	3L_12101883_DEL [dm3] 3L_12108783_DEL [dm6]	CACT	C	3.443e^-4	0.977	INTERGENIC
3L	4646309	3L_4646309_SNP [dm3] 3L_4646309_SNP [dm6]	T	C	3.445e^-4	0.977	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2997241	X_2997241_SNP [dm3] X_3103208_SNP [dm6]	A	G	3.452e^-4	0.977	INTRON kirre
X	12687675	X_12687675_SNP [dm3] X_12793642_SNP [dm6]	A	C	3.458e^-4	0.977	NON_SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
3R	27706841	3R_27706841_SNP [dm3] 3R_31881119_SNP [dm6]	T	C	3.467e^-4	0.977	INTRON heph	TF binding site BDTNP1_TFBS_dl
2R	18395204	2R_18395204_SNP [dm3] 2R_22507699_SNP [dm6]	T	C	3.467e^-4	0.977	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16311541	2R_16311541_SNP [dm3] 2R_20424036_SNP [dm6]	G	T	3.468e^-4	0.977	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15577916	2R_15577916_SNP [dm3] 2R_19690411_SNP [dm6]	T	A	3.480e^-4	0.977	UPSTREAM CG15126 INTERGENIC
2R	7630726	2R_7630726_SNP [dm3] 2R_11743221_SNP [dm6]	C	T	3.492e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8473080	3L_8473080_SNP [dm3] 3L_8479980_SNP [dm6]	C	T	3.493e^-4	0.977	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	15503634	3L_15503634_SNP [dm3] 3L_15510534_SNP [dm6]	A	T	3.494e^-4	0.977	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7740198	3R_7740198_SNP [dm3] 3R_11914476_SNP [dm6]	A	T	3.500e^-4	0.977	INTRON Cad87A
2R	15953831	2R_15953831_SNP [dm3] 2R_20066326_SNP [dm6]	G	A	3.500e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9950566	3R_9950566_SNP [dm3] 3R_14124844_SNP [dm6]	C	T	3.507e^-4	0.977	NON_SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
2R	13765392	2R_13765392_SNP [dm3] 2R_17877887_SNP [dm6]	C	T	3.512e^-4	0.977	SYNONYMOUS_CODING CG30325 INTRON Elk
2R	18506258	2R_18506258_SNP [dm3] 2R_22618753_SNP [dm6]	C	G	3.514e^-4	0.977	INTRON CG33143
3L	2443273	3L_2443273_SNP [dm3] 3L_2443273_SNP [dm6]	G	T	3.530e^-4	0.977	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25029949	3R_25029949_SNP [dm3] 3R_29204227_SNP [dm6]	G	A	3.534e^-4	0.977	UPSTREAM CG14508 INTERGENIC
2R	6648977	2R_6648977_SNP [dm3] 2R_10761472_SNP [dm6]	A	T	3.534e^-4	0.977	INTRON CG33144 EXON CR43605
3R	22674777	3R_22674777_SNP [dm3] 3R_26849055_SNP [dm6]	A	C	3.541e^-4	0.977	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	22073994	3R_22073994_SNP [dm3] 3R_26248272_SNP [dm6]	T	C	3.542e^-4	0.977	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6493455	3L_6493455_SNP [dm3] 3L_6500355_SNP [dm6]	C	T	3.549e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22944487	2L_22944487_SNP [dm3] 2L_23051755_SNP [dm6]	C	A	3.557e^-4	0.977	INTERGENIC
2L	6352766	2L_6352766_SNP [dm3] 2L_6352766_SNP [dm6]	G	A	3.577e^-4	0.977	SYNONYMOUS_CODING ppk7
2L	8860941	2L_8860941_SNP [dm3] 2L_8860941_SNP [dm6]	T	G	3.592e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5402967	2L_5402967_SNP [dm3] 2L_5402967_SNP [dm6]	T	C	3.592e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	6358276	2L_6358276_SNP [dm3] 2L_6358276_SNP [dm6]	T	A	3.599e^-4	0.977	START_GAINED CG9500 UTR_5_PRIME CG9500 DOWNSTREAM CR44777
2R	13289567	2R_13289567_SNP [dm3] 2R_17402062_SNP [dm6]	C	T	3.606e^-4	0.977	INTRON Sip1
3L	15974133	3L_15974133_SNP [dm3] 3L_15981033_SNP [dm6]	T	A	3.607e^-4	0.977	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
3L	14807503	3L_14807503_SNP [dm3] 3L_14814403_SNP [dm6]	T	C	3.612e^-4	0.977	INTRON CG17839
2L	5198592	2L_5198592_SNP [dm3] 2L_5198592_SNP [dm6]	T	G	3.626e^-4	0.977	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2L	5198607	2L_5198607_SNP [dm3] 2L_5198607_SNP [dm6]	T	C	3.626e^-4	0.977	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2L	5198621	2L_5198621_SNP [dm3] 2L_5198621_SNP [dm6]	A	G	3.626e^-4	0.977	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	704958	3L_704958_SNP [dm3] 3L_704958_SNP [dm6]	G	C	3.633e^-4	0.977	UPSTREAM CR44514 DOWNSTREAM CG13895 INTERGENIC
3L	11555691	3L_11555691_SNP [dm3] 3L_11562591_SNP [dm6]	A	C	3.647e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8777843	X_8777843_SNP [dm3] X_8883810_SNP [dm6]	C	A	3.648e^-4	0.977	INTRON Moe
2R	7111579	2R_7111579_SNP [dm3] 2R_11224074_SNP [dm6]	A	G	3.649e^-4	0.977	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2L	11826171	2L_11826171_SNP [dm3] 2L_11826171_SNP [dm6]	C	T	3.657e^-4	0.977	INTRON Pde1c
2R	12690053	2R_12690053_SNP [dm3] 2R_16802548_SNP [dm6]	T	G	3.662e^-4	0.977	INTERGENIC
3R	19365491	3R_19365491_SNP [dm3] 3R_23539769_SNP [dm6]	G	T	3.665e^-4	0.977	UPSTREAM CG10168 INTERGENIC
2R	10819731	2R_10819731_SNP [dm3] 2R_14932226_SNP [dm6]	C	T	3.669e^-4	0.977	SYNONYMOUS_CODING CG10253
3L	7195030	3L_7195030_SNP [dm3] 3L_7201930_SNP [dm6]	C	T	3.674e^-4	0.977	INTERGENIC
3L	7195056	3L_7195056_SNP [dm3] 3L_7201956_SNP [dm6]	C	T	3.674e^-4	0.977	INTERGENIC
2R	12508133	2R_12508133_SNP [dm3] 2R_16620628_SNP [dm6]	A	G	3.695e^-4	0.977	INTRON CG5065
3L	11555908	3L_11555908_SNP [dm3] 3L_11562808_SNP [dm6]	A	T	3.707e^-4	0.977	UTR_5_PRIME CG7394 UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2R	18229275	2R_18229275_SNP [dm3] 2R_22341770_SNP [dm6]	A	T	3.707e^-4	0.977	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
2L	10703202	2L_10703202_SNP [dm3] 2L_10703202_SNP [dm6]	C	T	3.710e^-4	0.977	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2R	15129083	2R_15129083_SNP [dm3] 2R_19241578_SNP [dm6]	C	T	3.716e^-4	0.977	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad
2R	18578882	2R_18578882_SNP [dm3] 2R_22691377_SNP [dm6]	T	G	3.717e^-4	0.977	EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10017947	3R_10017947_SNP [dm3] 3R_14192225_SNP [dm6]	G	A	3.718e^-4	0.977	INTRON Dop1R1
2L	2793977	2L_2793977_SNP [dm3] 2L_2793977_SNP [dm6]	G	A	3.727e^-4	0.977	INTRON Syt1
X	21439623	X_21439623_SNP [dm3] X_21568596_SNP [dm6]	C	A	3.728e^-4	0.977	INTERGENIC
3L	1905497	3L_1905497_SNP [dm3] 3L_1905497_SNP [dm6]	G	T	3.731e^-4	0.977	INTRON CG1887
3L	2443444	3L_2443444_SNP [dm3] 3L_2443444_SNP [dm6]	A	G	3.738e^-4	0.977	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5790999	2L_5790999_SNP [dm3] 2L_5790999_SNP [dm6]	T	A	3.747e^-4	0.977	INTRON CG9171
2L	8865929	2L_8865929_SNP [dm3] 2L_8865929_SNP [dm6]	A	G	3.750e^-4	0.977	NON_SYNONYMOUS_CODING CG32983 UPSTREAM CG9483 DOWNSTREAM CG32988 EXON CR45260	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22196022	3R_22196022_INS [dm3] 3R_26370300_INS [dm6]	T	TT	3.753e^-4	0.977	INTERGENIC
3L	11555455	3L_11555455_DEL [dm3] 3L_11562355_DEL [dm6]	TA	T	3.760e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555460	3L_11555460_SNP [dm3] 3L_11562360_SNP [dm6]	A	T	3.760e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555462	3L_11555462_SNP [dm3] 3L_11562362_SNP [dm6]	A	T	3.760e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	10319577	X_10319577_SNP [dm3] X_10425544_SNP [dm6]	A	T	3.773e^-4	0.977	INTRON CG32683
2L	9495821	2L_9495821_SNP [dm3] 2L_9495821_SNP [dm6]	G	C	3.777e^-4	0.977	UTR_5_PRIME CG33298 UPSTREAM Gdi INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	4303792	3R_4303792_SNP [dm3] 3R_8478070_SNP [dm6]	C	G	3.785e^-4	0.977	UPSTREAM CG45263 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	12090828	2L_12090828_SNP [dm3] 2L_12090828_SNP [dm6]	T	G	3.795e^-4	0.977	UPSTREAM Pex19 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	9339624	2L_9339624_SNP [dm3] 2L_9339624_SNP [dm6]	T	C	3.800e^-4	0.977	SYNONYMOUS_CODING Eaat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15145677	2L_15145677_SNP [dm3] 2L_15145677_SNP [dm6]	A	G	3.808e^-4	0.977	INTERGENIC
2L	18246420	2L_18246420_SNP [dm3] 2L_18246420_SNP [dm6]	T	G	3.810e^-4	0.977	INTRON CG42750
2L	7211652	2L_7211652_SNP [dm3] 2L_7211652_SNP [dm6]	A	C	3.810e^-4	0.977	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7303913	X_7303913_SNP [dm3] X_7409880_SNP [dm6]	C	A	3.814e^-4	0.977	INTERGENIC
2L	6916430	2L_6916430_SNP [dm3] 2L_6916430_SNP [dm6]	A	T	3.817e^-4	0.977	UTR_5_PRIME CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
3L	21397511	3L_21397511_SNP [dm3] 3L_21404411_SNP [dm6]	T	G	3.822e^-4	0.977	INTRON rgn
2R	14150187	2R_14150187_SNP [dm3] 2R_18262682_SNP [dm6]	C	T	3.824e^-4	0.977	INTERGENIC
2L	14076108	2L_14076108_SNP [dm3] 2L_14076108_SNP [dm6]	T	A	3.828e^-4	0.977	INTRON nAChRalpha5
2L	14076130	2L_14076130_SNP [dm3] 2L_14076130_SNP [dm6]	C	A	3.828e^-4	0.977	INTRON nAChRalpha5
X	21305417	X_21305417_SNP [dm3] X_21434390_SNP [dm6]	C	T	3.851e^-4	0.977	INTRON CG42343	transposable element FlyBase
X	3100872	X_3100872_SNP [dm3] X_3206839_SNP [dm6]	A	G	3.852e^-4	0.977	INTRON dnc	TF binding site mE1_TFBS_HSA
3L	11552381	3L_11552381_SNP [dm3] 3L_11559281_SNP [dm6]	G	A	3.854e^-4	0.977	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3L	14807520	3L_14807520_SNP [dm3] 3L_14814420_SNP [dm6]	C	T	3.856e^-4	0.977	INTRON CG17839
2R	7695581	2R_7695581_SNP [dm3] 2R_11808076_SNP [dm6]	C	T	3.858e^-4	0.977	INTRON ths
3R	22107998	3R_22107998_SNP [dm3] 3R_26282276_SNP [dm6]	T	C	3.862e^-4	0.977	INTERGENIC
3R	22108006	3R_22108006_SNP [dm3] 3R_26282284_SNP [dm6]	C	T	3.862e^-4	0.977	INTERGENIC
3R	22108008	3R_22108008_SNP [dm3] 3R_26282286_SNP [dm6]	C	T	3.862e^-4	0.977	INTERGENIC
3R	22108070	3R_22108070_SNP [dm3] 3R_26282348_SNP [dm6]	A	C	3.862e^-4	0.977	INTERGENIC
2R	12119128	2R_12119128_SNP [dm3] 2R_16231623_SNP [dm6]	C	T	3.869e^-4	0.977	SYNONYMOUS_CODING CG15701 UPSTREAM CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	11660958	3L_11660958_SNP [dm3] 3L_11667858_SNP [dm6]	T	C	3.872e^-4	0.977	INTRON CG32085
2R	18438209	2R_18438209_SNP [dm3] 2R_22550704_SNP [dm6]	A	C	3.887e^-4	0.977	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
2L	21976917	2L_21976917_SNP [dm3] 2L_21976917_SNP [dm6]	T	C	3.904e^-4	0.977	INTERGENIC
2R	21090181	2R_21090181_SNP [dm3] 2R_25202658_SNP [dm6]	G	A	3.912e^-4	0.977	INTRON CG9380	TF binding site mE1_TFBS_Kr
3L	18505676	3L_18505676_DEL [dm3] 3L_18512576_DEL [dm6]	CGCC	C	3.919e^-4	0.977	INTERGENIC
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	3.920e^-4	0.977	INTRON CR44941
3R	9720400	3R_9720400_SNP [dm3] 3R_13894678_SNP [dm6]	A	C	3.927e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27667718	3R_27667718_SNP [dm3] 3R_31841996_SNP [dm6]	T	A	3.953e^-4	0.977	UTR_3_PRIME RhoGAP100F
3L	13326169	3L_13326169_SNP [dm3] 3L_13333069_SNP [dm6]	C	A	3.973e^-4	0.977	INTERGENIC
3L	1597549	3L_1597549_SNP [dm3] 3L_1597549_SNP [dm6]	G	C	3.977e^-4	0.977	SPLICE_SITE_REGION CG13917 INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1597555	3L_1597555_SNP [dm3] 3L_1597555_SNP [dm6]	A	T	3.977e^-4	0.977	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13071101	3L_13071101_SNP [dm3] 3L_13078001_SNP [dm6]	A	T	3.978e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	3.991e^-4	0.977	INTRON Lip2
2R	16311566	2R_16311566_SNP [dm3] 2R_20424061_SNP [dm6]	G	T	4.009e^-4	0.977	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5320690	X_5320690_INS [dm3] X_5426657_INS [dm6]	T	TT	4.016e^-4	0.977	UTR_3_PRIME CG4165 UPSTREAM CG16756
3L	12283276	3L_12283276_SNP [dm3] 3L_12290176_SNP [dm6]	G	T	4.094e^-4	0.977	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	21976904	2L_21976904_DEL [dm3] 2L_21976904_DEL [dm6]	GATAG	G	4.100e^-4	0.977	INTERGENIC
X	11858023	X_11858023_SNP [dm3] X_11963990_SNP [dm6]	G	A	4.107e^-4	0.977	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9495706	2L_9495706_SNP [dm3] 2L_9495706_SNP [dm6]	A	T	4.107e^-4	0.977	UTR_5_PRIME CG33298 UPSTREAM Gdi INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Ubx
2L	20600915	2L_20600915_SNP [dm3] 2L_20600915_SNP [dm6]	T	C	4.127e^-4	0.977	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10618434	2R_10618434_SNP [dm3] 2R_14730929_SNP [dm6]	G	A	4.128e^-4	0.977	INTERGENIC
3L	11556258	3L_11556258_SNP [dm3] 3L_11563158_SNP [dm6]	A	G	4.131e^-4	0.977	UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11556333	3L_11556333_DEL [dm3] 3L_11563233_DEL [dm6]	TGGTATTGGCT...	T	4.131e^-4	0.977	INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15183946	2L_15183946_SNP [dm3] 2L_15183946_SNP [dm6]	T	G	4.142e^-4	0.977	INTRON CG4168
3L	10827721	3L_10827721_SNP [dm3] 3L_10834621_SNP [dm6]	C	G	4.143e^-4	0.977	INTERGENIC
3L	19090720	3L_19090720_SNP [dm3] 3L_19097620_SNP [dm6]	A	T	4.145e^-4	0.977	NON_SYNONYMOUS_CODING CG10424 UPSTREAM CG14079	TF binding site mE1_TFBS_cad
3L	19090816	3L_19090816_SNP [dm3] 3L_19097716_SNP [dm6]	A	G	4.145e^-4	0.977	UPSTREAM CG14079 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	19090921	3L_19090921_SNP [dm3] 3L_19097821_SNP [dm6]	G	T	4.145e^-4	0.977	UPSTREAM CG14079 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	21479987	3L_21479987_SNP [dm3] 3L_21486887_SNP [dm6]	A	C	4.147e^-4	0.977	INTRON Neu2	transposable element FlyBase
3L	7497011	3L_7497011_SNP [dm3] 3L_7503911_SNP [dm6]	T	C	4.192e^-4	0.977	INTERGENIC
3L	18995371	3L_18995371_SNP [dm3] 3L_19002271_SNP [dm6]	G	A	4.196e^-4	0.977	SYNONYMOUS_CODING CG18136
3L	18997958	3L_18997958_SNP [dm3] 3L_19004858_SNP [dm6]	C	T	4.196e^-4	0.977	UTR_3_PRIME nkd
3L	4077432	3L_4077432_SNP [dm3] 3L_4077432_SNP [dm6]	T	A	4.222e^-4	0.977	INTRON Gad1
2L	7211635	2L_7211635_SNP [dm3] 2L_7211635_SNP [dm6]	A	G	4.224e^-4	0.977	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6288910	3L_6288910_SNP [dm3] 3L_6295810_SNP [dm6]	T	C	4.232e^-4	0.977	INTERGENIC
X	3066365	X_3066365_SNP [dm3] X_3172332_SNP [dm6]	G	T	4.243e^-4	0.977	UTR_3_PRIME CG18508 DOWNSTREAM CG18508 & 1 other
3L	13886217	3L_13886217_SNP [dm3] 3L_13893117_SNP [dm6]	T	G	4.244e^-4	0.977	INTRON dysc
2L	3725024	2L_3725024_SNP [dm3] 2L_3725024_SNP [dm6]	C	A	4.249e^-4	0.977	UTR_3_PRIME Shaw INTRON Shaw
3R	16998940	3R_16998940_SNP [dm3] 3R_21173218_SNP [dm6]	T	G	4.254e^-4	0.977	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3L	8620388	3L_8620388_SNP [dm3] 3L_8627288_SNP [dm6]	A	T	4.257e^-4	0.977	INTRON Zasp66
2L	6353633	2L_6353633_SNP [dm3] 2L_6353633_SNP [dm6]	C	A	4.267e^-4	0.977	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7098695	2R_7098695_SNP [dm3] 2R_11211190_SNP [dm6]	G	A	4.281e^-4	0.977	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20355654	3R_20355654_SNP [dm3] 3R_24529932_SNP [dm6]	G	A	4.299e^-4	0.977	SYNONYMOUS_CODING CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	19095243	3L_19095243_SNP [dm3] 3L_19102143_SNP [dm6]	A	T	4.308e^-4	0.977	INTERGENIC
3L	14807501	3L_14807501_SNP [dm3] 3L_14814401_SNP [dm6]	G	C	4.312e^-4	0.977	INTRON CG17839
2R	9240116	2R_9240116_SNP [dm3] 2R_13352611_SNP [dm6]	C	G	4.323e^-4	0.977	INTRON CR44206	TF binding site mE1_TFBS_chinmo
X	20566697	X_20566697_SNP [dm3] X_20695670_SNP [dm6]	T	C	4.324e^-4	0.977	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6337954	3L_6337954_SNP [dm3] 3L_6344854_SNP [dm6]	C	A	4.327e^-4	0.977	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25090139	3R_25090139_SNP [dm3] 3R_29264417_SNP [dm6]	G	A	4.328e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25090142	3R_25090142_SNP [dm3] 3R_29264420_SNP [dm6]	G	A	4.328e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11672937	X_11672937_INS [dm3] X_11778904_INS [dm6]	C	CC	4.329e^-4	0.977	UPSTREAM dy INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10385208	3L_10385208_SNP [dm3] 3L_10392108_SNP [dm6]	G	T	4.331e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9417384	2L_9417384_SNP [dm3] 2L_9417384_SNP [dm6]	T	G	4.336e^-4	0.977	INTRON Mco1
3R	19365505	3R_19365505_SNP [dm3] 3R_23539783_SNP [dm6]	G	A	4.341e^-4	0.977	UPSTREAM CG10168 INTERGENIC
2R	14162133	2R_14162133_SNP [dm3] 2R_18274628_SNP [dm6]	G	A	4.343e^-4	0.977	DOWNSTREAM Ote INTERGENIC
X	17218671	X_17218671_SNP [dm3] X_17324638_SNP [dm6]	T	C	4.343e^-4	0.977	DOWNSTREAM B-H2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
X	12200016	X_12200016_SNP [dm3] X_12305983_SNP [dm6]	G	A	4.359e^-4	0.977	INTRON Ten-a
2L	21976776	2L_21976776_INS [dm3] 2L_21976776_INS [dm6]	A	ATTTCAAGACCTCA...	4.393e^-4	0.977	INTERGENIC
3L	1253003	3L_1253003_SNP [dm3] 3L_1253003_SNP [dm6]	C	T	4.403e^-4	0.977	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13392318	3L_13392318_SNP [dm3] 3L_13399218_SNP [dm6]	T	C	4.426e^-4	0.977	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9486576	2R_9486576_SNP [dm3] 2R_13599071_SNP [dm6]	C	T	4.430e^-4	0.977	DOWNSTREAM S-Lap5 INTERGENIC
3L	19095352	3L_19095352_SNP [dm3] 3L_19102252_SNP [dm6]	T	A	4.432e^-4	0.977	INTERGENIC
2L	1601915	2L_1601915_SNP [dm3] 2L_1601915_SNP [dm6]	A	G	4.448e^-4	0.977	SPLICE_SITE_REGION haf INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
2L	10703207	2L_10703207_SNP [dm3] 2L_10703207_SNP [dm6]	T	A	4.457e^-4	0.977	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2R	7695611	2R_7695611_SNP [dm3] 2R_11808106_SNP [dm6]	C	A	4.461e^-4	0.977	INTRON ths
3R	10981656	3R_10981656_SNP [dm3] 3R_15155934_SNP [dm6]	T	C	4.462e^-4	0.977	INTRON Gyc88E
2R	4632840	2R_4632840_SNP [dm3] 2R_8745335_SNP [dm6]	T	A	4.463e^-4	0.977	UPSTREAM CR44277 INTRON CG8740
3R	7760008	3R_7760008_SNP [dm3] 3R_11934286_SNP [dm6]	A	T	4.464e^-4	0.977	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15129443	2R_15129443_SNP [dm3] 2R_19241938_SNP [dm6]	T	C	4.465e^-4	0.977	INTRON cora	TF binding site mE1_TFBS_cad
3L	15974129	3L_15974129_SNP [dm3] 3L_15981029_SNP [dm6]	A	C	4.466e^-4	0.977	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
3R	8412889	3R_8412889_INS [dm3] 3R_12587167_INS [dm6]	C	CC	4.488e^-4	0.977	INTRON Octbeta2R
3L	19088081	3L_19088081_SNP [dm3] 3L_19094981_SNP [dm6]	G	A	4.494e^-4	0.977	UTR_3_PRIME CG11577 DOWNSTREAM MESR6
3R	27440408	3R_27440408_SNP [dm3] 3R_31614686_SNP [dm6]	C	G	4.495e^-4	0.977	DOWNSTREAM CG11539 INTRON Med	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	20354868	3R_20354868_SNP [dm3] 3R_24529146_SNP [dm6]	T	C	4.500e^-4	0.977	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13623	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1171780	X_1171780_SNP [dm3] X_1277747_SNP [dm6]	T	C	4.506e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
X	1171833	X_1171833_SNP [dm3] X_1277800_SNP [dm6]	A	G	4.506e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10286825	2R_10286825_SNP [dm3] 2R_14399320_SNP [dm6]	A	G	4.521e^-4	0.977	INTERGENIC
2R	4037152	2R_4037152_SNP [dm3] 2R_8149647_SNP [dm6]	A	T	4.527e^-4	0.977	UPSTREAM kermit INTRON Lpin & 1 other
3L	604214	3L_604214_SNP [dm3] 3L_604214_SNP [dm6]	A	C	4.541e^-4	0.977	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9738303	2R_9738303_SNP [dm3] 2R_13850798_SNP [dm6]	A	C	4.547e^-4	0.977	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	20239784	3R_20239784_SNP [dm3] 3R_24414062_SNP [dm6]	T	G	4.551e^-4	0.977	INTRON nAChRalpha1
3L	13071530	3L_13071530_SNP [dm3] 3L_13078430_SNP [dm6]	G	A	4.552e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2903424	2L_2903424_SNP [dm3] 2L_2903424_SNP [dm6]	T	C	4.559e^-4	0.977	INTRON lilli	TF binding site mE1_TFBS_chinmo
X	6497856	X_6497856_SNP [dm3] X_6603823_SNP [dm6]	A	C	4.563e^-4	0.977	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6497868	X_6497868_SNP [dm3] X_6603835_SNP [dm6]	A	C	4.563e^-4	0.977	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092056	3L_12092056_SNP [dm3] 3L_12098956_SNP [dm6]	G	A	4.566e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12429187	3L_12429187_SNP [dm3] 3L_12436087_SNP [dm6]	G	A	4.566e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11942512	3R_11942512_SNP [dm3] 3R_16116790_SNP [dm6]	G	T	4.581e^-4	0.977	INTRON Sb
3L	15444513	3L_15444513_SNP [dm3] 3L_15451413_SNP [dm6]	T	A	4.590e^-4	0.977	INTERGENIC
2L	3311222	2L_3311222_SNP [dm3] 2L_3311222_SNP [dm6]	C	T	4.598e^-4	0.977	SYNONYMOUS_CODING CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11376418	2R_11376418_SNP [dm3] 2R_15488913_SNP [dm6]	A	G	4.603e^-4	0.977	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7125341	X_7125341_SNP [dm3] X_7231308_SNP [dm6]	G	A	4.614e^-4	0.977	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16300755	3R_16300755_INS [dm3] 3R_20475033_INS [dm6]	T	TTAAT	4.618e^-4	0.977	INTRON Gfrl
2L	15338919	2L_15338919_SNP [dm3] 2L_15338919_SNP [dm6]	A	G	4.618e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5469288	X_5469288_SNP [dm3] X_5575255_SNP [dm6]	T	A	4.620e^-4	0.977	INTERGENIC
2L	5403038	2L_5403038_SNP [dm3] 2L_5403038_SNP [dm6]	T	A	4.633e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	22183738	X_22183738_SNP [dm3] X_22781902_SNP [dm6]	T	C	4.637e^-4	0.977	INTRON CR44997
2L	2840830	2L_2840830_SNP [dm3] 2L_2840830_SNP [dm6]	T	A	4.649e^-4	0.977	UPSTREAM CR45342 INTRON CG2975
2R	13440868	2R_13440868_SNP [dm3] 2R_17553363_SNP [dm6]	C	T	4.659e^-4	0.977	NON_SYNONYMOUS_CODING MESR4
2R	13441026	2R_13441026_SNP [dm3] 2R_17553521_SNP [dm6]	G	A	4.659e^-4	0.977	SYNONYMOUS_CODING MESR4
2R	13441284	2R_13441284_SNP [dm3] 2R_17553779_SNP [dm6]	T	C	4.659e^-4	0.977	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_sens
2L	15154219	2L_15154219_SNP [dm3] 2L_15154219_SNP [dm6]	G	A	4.672e^-4	0.977	INTERGENIC
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	4.672e^-4	0.977	INTRON aret
3R	26446863	3R_26446863_SNP [dm3] 3R_30621141_SNP [dm6]	T	C	4.678e^-4	0.977	INTRON CG44954
3R	27512561	3R_27512561_INS [dm3] 3R_31686839_INS [dm6]	G	GG	4.687e^-4	0.977	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8626603	2L_8626603_SNP [dm3] 2L_8626603_SNP [dm6]	G	C	4.689e^-4	0.977	INTRON Sema-1a
2L	6353600	2L_6353600_SNP [dm3] 2L_6353600_SNP [dm6]	C	G	4.699e^-4	0.977	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6354062	2L_6354062_SNP [dm3] 2L_6354062_SNP [dm6]	G	A	4.699e^-4	0.977	SYNONYMOUS_CODING ppk7 UPSTREAM ppk14	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo
2L	5501511	2L_5501511_SNP [dm3] 2L_5501511_SNP [dm6]	A	T	4.705e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7028325	2R_7028325_SNP [dm3] 2R_11140820_SNP [dm6]	G	A	4.716e^-4	0.977	SYNONYMOUS_CODING CG13229
X	20525483	X_20525483_SNP [dm3] X_20654456_SNP [dm6]	A	G	4.719e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17488303	X_17488303_SNP [dm3] X_17594270_SNP [dm6]	T	A	4.730e^-4	0.977	INTRON CG12991
3L	15502644	3L_15502644_SNP [dm3] 3L_15509544_SNP [dm6]	C	T	4.737e^-4	0.977	UTR_5_PRIME gdl-ORF39 & 1 other UPSTREAM gdl DOWNSTREAM Z600	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15502816	3L_15502816_SNP [dm3] 3L_15509716_SNP [dm6]	G	A	4.737e^-4	0.977	UTR_5_PRIME gdl UTR_3_PRIME gdl-ORF39 DOWNSTREAM Z600	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15503638	3L_15503638_SNP [dm3] 3L_15510538_SNP [dm6]	G	T	4.737e^-4	0.977	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15503644	3L_15503644_SNP [dm3] 3L_15510544_SNP [dm6]	A	G	4.737e^-4	0.977	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15503652	3L_15503652_SNP [dm3] 3L_15510552_SNP [dm6]	A	T	4.737e^-4	0.977	UPSTREAM Eip71CD INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12147909	2L_12147909_SNP [dm3] 2L_12147909_SNP [dm6]	A	G	4.743e^-4	0.977	INTRON CG31760
2L	6356523	2L_6356523_SNP [dm3] 2L_6356523_SNP [dm6]	G	C	4.747e^-4	0.977	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6356528	2L_6356528_SNP [dm3] 2L_6356528_SNP [dm6]	C	A	4.747e^-4	0.977	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9976844	3R_9976844_SNP [dm3] 3R_14151122_SNP [dm6]	G	A	4.764e^-4	0.977	SYNONYMOUS_CODING CG14355
2L	9496771	2L_9496771_INS [dm3] 2L_9496771_INS [dm6]	T	TT	4.769e^-4	0.977	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26529344	3R_26529344_DEL [dm3] 3R_30703622_DEL [dm6]	AG	A	4.772e^-4	0.977	INTERGENIC
3R	26529349	3R_26529349_SNP [dm3] 3R_30703627_SNP [dm6]	A	T	4.772e^-4	0.977	INTERGENIC
3R	26529350	3R_26529350_DEL [dm3] 3R_30703628_DEL [dm6]	CTGTTTAGGGCGTGGAGAAA...	C	4.772e^-4	0.977	INTERGENIC
3R	25029985	3R_25029985_SNP [dm3] 3R_29204263_SNP [dm6]	C	T	4.779e^-4	0.977	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5551248	2L_5551248_SNP [dm3] 2L_5551248_SNP [dm6]	G	C	4.794e^-4	0.977	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6428159	3L_6428159_SNP [dm3] 3L_6435059_SNP [dm6]	C	T	4.794e^-4	0.977	INTRON CG42747
3L	6428179	3L_6428179_SNP [dm3] 3L_6435079_SNP [dm6]	C	G	4.794e^-4	0.977	INTRON CG42747
X	8083031	X_8083031_SNP [dm3] X_8188998_SNP [dm6]	C	G	4.822e^-4	0.977	INTRON sdt
2L	13870316	2L_13870316_SNP [dm3] 2L_13870316_SNP [dm6]	A	G	4.837e^-4	0.977	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	10826363	2R_10826363_SNP [dm3] 2R_14938858_SNP [dm6]	A	C	4.840e^-4	0.977	INTRON Lap1
3R	25449396	3R_25449396_SNP [dm3] 3R_29623674_SNP [dm6]	T	A	4.846e^-4	0.977	INTERGENIC
2R	9943601	2R_9943601_SNP [dm3] 2R_14056096_SNP [dm6]	T	A	4.848e^-4	0.977	INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4937825	2R_4937825_INS [dm3] 2R_9050320_INS [dm6]	T	TAAACACATCTATTAATACA...	4.854e^-4	0.977	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5582020	3L_5582020_SNP [dm3] 3L_5588920_SNP [dm6]	G	A	4.857e^-4	0.977	SYNONYMOUS_CODING l_3_psg2
2R	18506254	2R_18506254_SNP [dm3] 2R_22618749_SNP [dm6]	A	C	4.880e^-4	0.977	INTRON CG33143
X	2993808	X_2993808_SNP [dm3] X_3099775_SNP [dm6]	G	T	4.902e^-4	0.977	UTR_5_PRIME kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3659874	2L_3659874_SNP [dm3] 2L_3659874_SNP [dm6]	T	C	4.911e^-4	0.977	INTERGENIC
3R	20355717	3R_20355717_SNP [dm3] 3R_24529995_SNP [dm6]	T	C	4.925e^-4	0.977	SYNONYMOUS_CODING CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	13918206	X_13918206_SNP [dm3] X_14024173_SNP [dm6]	G	T	4.935e^-4	0.977	DOWNSTREAM tRNA:S774:12Ec INTERGENIC
3L	13919846	3L_13919846_SNP [dm3] 3L_13926746_SNP [dm6]	T	A	4.940e^-4	0.977	NON_SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_sens
3L	8213590	3L_8213590_SNP [dm3] 3L_8220490_SNP [dm6]	G	T	4.964e^-4	0.977	INTERGENIC
3R	11942458	3R_11942458_DEL [dm3] 3R_16116736_DEL [dm6]	TA	T	4.968e^-4	0.977	INTRON Sb
2R	10819040	2R_10819040_SNP [dm3] 2R_14931535_SNP [dm6]	A	C	4.981e^-4	0.977	NON_SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_sens
X	4941998	X_4941998_SNP [dm3] X_5047965_SNP [dm6]	G	T	4.981e^-4	0.977	UPSTREAM ovo INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26642903	3R_26642903_SNP [dm3] 3R_30817181_SNP [dm6]	C	T	4.983e^-4	0.977	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_cad
3L	11294786	3L_11294786_SNP [dm3] 3L_11301686_SNP [dm6]	C	G	4.984e^-4	0.977	INTERGENIC
3R	10321161	3R_10321161_SNP [dm3] 3R_14495439_SNP [dm6]	T	G	5.011e^-4	0.977	UPSTREAM CR44177 INTERGENIC
3R	7659049	3R_7659049_SNP [dm3] 3R_11833327_SNP [dm6]	G	A	5.030e^-4	0.977	INTRON CG6959	TF binding site mE1_TFBS_cad
X	16963276	X_16963276_SNP [dm3] X_17069243_SNP [dm6]	A	T	5.032e^-4	0.977	UTR_3_PRIME CG8949 UPSTREAM CG43077
2L	13643649	2L_13643649_SNP [dm3] 2L_13643649_SNP [dm6]	C	T	5.059e^-4	0.977	DOWNSTREAM CR44726 INTERGENIC
2L	970526	2L_970526_SNP [dm3] 2L_970526_SNP [dm6]	G	T	5.064e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1862152	2L_1862152_SNP [dm3] 2L_1862152_SNP [dm6]	A	G	5.069e^-4	0.977	INTRON CG31663
3L	7382781	3L_7382781_SNP [dm3] 3L_7389681_SNP [dm6]	G	A	5.071e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7382801	3L_7382801_SNP [dm3] 3L_7389701_SNP [dm6]	C	T	5.071e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7382803	3L_7382803_SNP [dm3] 3L_7389703_SNP [dm6]	C	T	5.071e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1601816	2L_1601816_SNP [dm3] 2L_1601816_SNP [dm6]	T	C	5.076e^-4	0.977	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad
2L	6354138	2L_6354138_SNP [dm3] 2L_6354138_SNP [dm6]	C	A	5.081e^-4	0.977	NON_SYNONYMOUS_CODING ppk7 UPSTREAM ppk14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6359934	2L_6359934_SNP [dm3] 2L_6359934_SNP [dm6]	T	C	5.082e^-4	0.977	UPSTREAM CR44778 EXON CR44777
2L	12229713	2L_12229713_SNP [dm3] 2L_12229713_SNP [dm6]	T	C	5.085e^-4	0.977	INTRON aret
X	2992346	X_2992346_SNP [dm3] X_3098313_SNP [dm6]	C	T	5.123e^-4	0.977	INTRON kirre	regulatory region REDfly_CRMs
3R	22065910	3R_22065910_SNP [dm3] 3R_26240188_SNP [dm6]	C	A	5.125e^-4	0.977	INTRON CR42745
2L	11244171	2L_11244171_SNP [dm3] 2L_11244171_SNP [dm6]	A	T	5.126e^-4	0.977	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244198	2L_11244198_SNP [dm3] 2L_11244198_SNP [dm6]	A	G	5.126e^-4	0.977	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244351	2L_11244351_SNP [dm3] 2L_11244351_SNP [dm6]	C	T	5.126e^-4	0.977	INTRON ab	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244717	2L_11244717_SNP [dm3] 2L_11244717_SNP [dm6]	G	A	5.126e^-4	0.977	INTRON ab
2L	3614972	2L_3614972_SNP [dm3] 2L_3614972_SNP [dm6]	G	A	5.128e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	9648071	3R_9648071_SNP [dm3] 3R_13822349_SNP [dm6]	T	A	5.140e^-4	0.977	INTERGENIC
3R	6813906	3R_6813906_SNP [dm3] 3R_10988184_SNP [dm6]	G	A	5.145e^-4	0.977	INTRON CG34114
2L	12547687	2L_12547687_SNP [dm3] 2L_12547687_SNP [dm6]	T	C	5.154e^-4	0.977	INTERGENIC
2L	12547702	2L_12547702_SNP [dm3] 2L_12547702_SNP [dm6]	A	T	5.154e^-4	0.977	INTERGENIC	transposable element FlyBase
2L	4709708	2L_4709708_DEL [dm3] 2L_4709708_DEL [dm6]	TCAGGATTACTTT...	T	5.158e^-4	0.977	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4328524	3R_4328524_SNP [dm3] 3R_8502802_SNP [dm6]	C	G	5.173e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4425328	2L_4425328_SNP [dm3] 2L_4425328_SNP [dm6]	A	G	5.177e^-4	0.977	INTRON CG15431
2R	15972446	2R_15972446_SNP [dm3] 2R_20084941_SNP [dm6]	T	A	5.201e^-4	0.977	UPSTREAM CR44632 INTERGENIC
2R	9780083	2R_9780083_SNP [dm3] 2R_13892578_SNP [dm6]	G	A	5.205e^-4	0.977	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1870671	2L_1870671_SNP [dm3] 2L_1870671_SNP [dm6]	A	G	5.207e^-4	0.977	NON_SYNONYMOUS_CODING CG7295 INTRON CG31663
2L	14562249	2L_14562249_SNP [dm3] 2L_14562249_SNP [dm6]	C	T	5.226e^-4	0.977	DOWNSTREAM CR44855 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10690294	3L_10690294_SNP [dm3] 3L_10697194_SNP [dm6]	A	G	5.230e^-4	0.977	UPSTREAM NijA INTERGENIC
2L	15183943	2L_15183943_INS [dm3] 2L_15183943_INS [dm6]	A	AA	5.233e^-4	0.977	INTRON CG4168
2R	7111987	2R_7111987_SNP [dm3] 2R_11224482_SNP [dm6]	T	C	5.243e^-4	0.977	INTRON CG7737	TF binding site mE1_TFBS_cad
3L	19088246	3L_19088246_SNP [dm3] 3L_19095146_SNP [dm6]	G	T	5.248e^-4	0.977	UTR_3_PRIME CG11577 DOWNSTREAM MESR6
2R	10811283	2R_10811283_SNP [dm3] 2R_14923778_SNP [dm6]	G	A	5.255e^-4	0.977	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10286809	2R_10286809_SNP [dm3] 2R_14399304_SNP [dm6]	A	G	5.277e^-4	0.977	INTERGENIC
2R	10286811	2R_10286811_SNP [dm3] 2R_14399306_SNP [dm6]	T	G	5.277e^-4	0.977	INTERGENIC
2R	6437672	2R_6437672_SNP [dm3] 2R_10550167_SNP [dm6]	A	G	5.301e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3L	6987832	3L_6987832_SNP [dm3] 3L_6994732_SNP [dm6]	A	C	5.307e^-4	0.977	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	2413868	X_2413868_INS [dm3] X_2519835_INS [dm6]	A	ATTTAAGGTCAA...	5.309e^-4	0.977	INTRON trol
3R	24420280	3R_24420280_SNP [dm3] 3R_28594558_SNP [dm6]	G	T	5.311e^-4	0.977	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	5978799	2R_5978799_SNP [dm3] 2R_10091294_SNP [dm6]	A	T	5.320e^-4	0.977	INTRON CG2269
3L	3534578	3L_3534578_INS [dm3] 3L_3534578_INS [dm6]	T	TT	5.327e^-4	0.977	INTRON Eip63E
3L	3534580	3L_3534580_MNP [dm3] 3L_3534580_MNP [dm6]	CTGT	GACA	5.327e^-4	0.977	INTRON Eip63E
3R	4895994	3R_4895994_INS [dm3] 3R_9070272_INS [dm6]	T	TATGT	5.330e^-4	0.977	UTR_3_PRIME pum
2L	5797852	2L_5797852_SNP [dm3] 2L_5797852_SNP [dm6]	C	G	5.333e^-4	0.977	INTRON CG9171
2L	12241905	2L_12241905_INS [dm3] 2L_12241905_INS [dm6]	T	TGATA	5.361e^-4	0.977	INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19078379	3L_19078379_SNP [dm3] 3L_19085279_SNP [dm6]	T	C	5.369e^-4	0.977	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	9780294	2R_9780294_SNP [dm3] 2R_13892789_SNP [dm6]	T	G	5.371e^-4	0.977	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9104010	2R_9104010_SNP [dm3] 2R_13216505_SNP [dm6]	T	G	5.372e^-4	0.977	DOWNSTREAM CG4627 INTRON CG4630	TF binding site mE1_TFBS_cad
2L	976827	2L_976827_SNP [dm3] 2L_976827_SNP [dm6]	A	G	5.372e^-4	0.977	INTERGENIC
2L	9495281	2L_9495281_SNP [dm3] 2L_9495281_SNP [dm6]	A	C	5.374e^-4	0.977	UPSTREAM CG33298 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	15437639	2L_15437639_SNP [dm3] 2L_15437639_SNP [dm6]	T	A	5.388e^-4	0.977	INTERGENIC
2R	9469124	2R_9469124_SNP [dm3] 2R_13581619_SNP [dm6]	A	G	5.399e^-4	0.977	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7360530	3L_7360530_SNP [dm3] 3L_7367430_SNP [dm6]	G	C	5.402e^-4	0.977	UTR_3_PRIME Sh3beta INTRON Sh3beta
2L	18232526	2L_18232526_SNP [dm3] 2L_18232526_SNP [dm6]	A	T	5.403e^-4	0.977	INTRON CG42750
2L	10708322	2L_10708322_SNP [dm3] 2L_10708322_SNP [dm6]	G	C	5.405e^-4	0.977	INTRON Lip2
3R	10591931	3R_10591931_SNP [dm3] 3R_14766209_SNP [dm6]	G	A	5.409e^-4	0.977	INTRON jvl
X	1171882	X_1171882_SNP [dm3] X_1277849_SNP [dm6]	T	A	5.410e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15974138	3L_15974138_SNP [dm3] 3L_15981038_SNP [dm6]	A	G	5.417e^-4	0.977	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
2L	9874917	2L_9874917_SNP [dm3] 2L_9874917_SNP [dm6]	C	A	5.421e^-4	0.977	INTRON nAChRalpha6
3R	10328110	3R_10328110_SNP [dm3] 3R_14502388_SNP [dm6]	G	A	5.424e^-4	0.977	INTRON CR44177
2R	4608824	2R_4608824_SNP [dm3] 2R_8721319_SNP [dm6]	T	G	5.437e^-4	0.977	NON_SYNONYMOUS_CODING CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5439627	X_5439627_SNP [dm3] X_5545594_SNP [dm6]	T	C	5.438e^-4	0.977	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	11555509	3L_11555509_SNP [dm3] 3L_11562409_SNP [dm6]	G	A	5.446e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	10354661	3L_10354661_SNP [dm3] 3L_10361561_SNP [dm6]	G	T	5.451e^-4	0.977	EXON CR44327	TF binding site mE1_TFBS_cad
3L	10354805	3L_10354805_SNP [dm3] 3L_10361705_SNP [dm6]	T	G	5.451e^-4	0.977	EXON CR44327	TF binding site mE1_TFBS_cad
2L	13873074	2L_13873074_SNP [dm3] 2L_13873074_SNP [dm6]	G	A	5.458e^-4	0.977	INTRON CenG1A
2L	1949847	2L_1949847_SNP [dm3] 2L_1949847_SNP [dm6]	T	C	5.473e^-4	0.977	DOWNSTREAM erm INTERGENIC
3R	19828396	3R_19828396_SNP [dm3] 3R_24002674_SNP [dm6]	G	A	5.475e^-4	0.977	INTRON KrT95D
3L	2443439	3L_2443439_SNP [dm3] 3L_2443439_SNP [dm6]	A	G	5.499e^-4	0.977	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11536921	2R_11536921_SNP [dm3] 2R_15649416_SNP [dm6]	C	T	5.521e^-4	0.977	INTRON CG42524
X	12870466	X_12870466_SNP [dm3] X_12976433_SNP [dm6]	T	C	5.527e^-4	0.977	UPSTREAM CG12716 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13111054	2L_13111054_SNP [dm3] 2L_13111054_SNP [dm6]	A	T	5.532e^-4	0.977	INTERGENIC
2L	1545155	2L_1545155_SNP [dm3] 2L_1545155_SNP [dm6]	A	G	5.534e^-4	0.977	INTERGENIC
3R	27054954	3R_27054954_INS [dm3] 3R_31229232_INS [dm6]	A	AGA	5.543e^-4	0.977	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	6409961	2R_6409961_SNP [dm3] 2R_10522456_SNP [dm6]	G	A	5.552e^-4	0.977	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22074007	3R_22074007_SNP [dm3] 3R_26248285_SNP [dm6]	A	G	5.564e^-4	0.977	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20410825	3R_20410825_SNP [dm3] 3R_24585103_SNP [dm6]	A	C	5.565e^-4	0.977	UTR_5_PRIME CG13625 UPSTREAM mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4241115	2L_4241115_SNP [dm3] 2L_4241115_SNP [dm6]	A	C	5.565e^-4	0.977	UPSTREAM CR45720 EXON CR44058
3R	10204040	3R_10204040_SNP [dm3] 3R_14378318_SNP [dm6]	T	C	5.570e^-4	0.977	UPSTREAM CR44943 INTERGENIC
3R	4894459	3R_4894459_SNP [dm3] 3R_9068737_SNP [dm6]	G	T	5.583e^-4	0.977	UTR_3_PRIME pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	10444072	2L_10444072_SNP [dm3] 2L_10444072_SNP [dm6]	C	T	5.584e^-4	0.977	INTRON loh	TF binding site BDTNP1_TFBS_twi
3L	15943265	3L_15943265_SNP [dm3] 3L_15950165_SNP [dm6]	G	T	5.592e^-4	0.977	INTRON Pka-C3
X	1073820	X_1073820_SNP [dm3] X_1179787_SNP [dm6]	T	C	5.607e^-4	0.977	UPSTREAM CG11379 INTERGENIC
X	1078074	X_1078074_SNP [dm3] X_1184041_SNP [dm6]	C	T	5.607e^-4	0.977	UPSTREAM CG14626 DOWNSTREAM CG14627 INTERGENIC
3L	7195061	3L_7195061_SNP [dm3] 3L_7201961_SNP [dm6]	T	G	5.607e^-4	0.977	INTERGENIC
2R	6284772	2R_6284772_SNP [dm3] 2R_10397267_SNP [dm6]	A	G	5.615e^-4	0.977	INTRON CG42732
3R	17685119	3R_17685119_INS [dm3] 3R_21859397_INS [dm6]	G	GCG	5.618e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9727944	3L_9727944_SNP [dm3] 3L_9734844_SNP [dm6]	T	G	5.629e^-4	0.977	NON_SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
3L	16288550	3L_16288550_SNP [dm3] 3L_16295450_SNP [dm6]	A	T	5.637e^-4	0.977	INTRON CG4962	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14711307	X_14711307_SNP [dm3] X_14817274_SNP [dm6]	G	T	5.638e^-4	0.977	INTRON rut
2R	14143505	2R_14143505_SNP [dm3] 2R_18256000_SNP [dm6]	G	A	5.641e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22065932	3R_22065932_SNP [dm3] 3R_26240210_SNP [dm6]	T	A	5.645e^-4	0.977	INTRON CR42745
2R	19862311	2R_19862311_SNP [dm3] 2R_23974788_SNP [dm6]	C	T	5.647e^-4	0.977	DOWNSTREAM Gadd34 INTRON mr
2L	4069749	2L_4069749_SNP [dm3] 2L_4069749_SNP [dm6]	C	T	5.652e^-4	0.977	INTRON ed
3R	9927537	3R_9927537_SNP [dm3] 3R_14101815_SNP [dm6]	C	T	5.659e^-4	0.977	INTRON PK1-R	TF binding site mE1_TFBS_cad
2R	10286824	2R_10286824_SNP [dm3] 2R_14399319_SNP [dm6]	C	G	5.661e^-4	0.977	INTERGENIC
3L	11555470	3L_11555470_SNP [dm3] 3L_11562370_SNP [dm6]	G	A	5.678e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555535	3L_11555535_SNP [dm3] 3L_11562435_SNP [dm6]	A	T	5.678e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11555675	3L_11555675_DEL [dm3] 3L_11562575_DEL [dm6]	TT	T	5.678e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11555678	3L_11555678_SNP [dm3] 3L_11562578_SNP [dm6]	G	C	5.678e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11555940	3L_11555940_SNP [dm3] 3L_11562840_SNP [dm6]	A	G	5.678e^-4	0.977	NON_SYNONYMOUS_CODING CG7394 UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	11556373	3L_11556373_SNP [dm3] 3L_11563273_SNP [dm6]	A	T	5.678e^-4	0.977	INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11556379	3L_11556379_SNP [dm3] 3L_11563279_SNP [dm6]	T	A	5.678e^-4	0.977	INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17903484	2R_17903484_SNP [dm3] 2R_22015979_SNP [dm6]	A	T	5.686e^-4	0.977	INTRON CG34370
2R	5468966	2R_5468966_SNP [dm3] 2R_9581461_SNP [dm6]	T	G	5.687e^-4	0.977	DOWNSTREAM CG1868 INTRON CG1814
2R	9776968	2R_9776968_SNP [dm3] 2R_13889463_SNP [dm6]	T	C	5.696e^-4	0.977	NON_SYNONYMOUS_CODING shot INTRON shot
2R	10821394	2R_10821394_SNP [dm3] 2R_14933889_SNP [dm6]	G	T	5.699e^-4	0.977	UTR_3_PRIME CG12853 UPSTREAM CG10253 INTRON CG10253	TF binding site mE1_TFBS_Trl
X	20561484	X_20561484_SNP [dm3] X_20690457_SNP [dm6]	C	A	5.712e^-4	0.977	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	7497434	3L_7497434_SNP [dm3] 3L_7504334_SNP [dm6]	C	G	5.720e^-4	0.977	INTERGENIC
2R	10210272	2R_10210272_SNP [dm3] 2R_14322767_SNP [dm6]	G	C	5.723e^-4	0.977	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12704111	2R_12704111_SNP [dm3] 2R_16816606_SNP [dm6]	C	T	5.731e^-4	0.977	UTR_5_PRIME CG5550 DOWNSTREAM CR43417
2R	17944842	2R_17944842_SNP [dm3] 2R_22057337_SNP [dm6]	A	G	5.738e^-4	0.977	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	2786002	2L_2786002_SNP [dm3] 2L_2786002_SNP [dm6]	G	C	5.740e^-4	0.977	INTRON Syt1
2L	12204845	2L_12204845_SNP [dm3] 2L_12204845_SNP [dm6]	T	C	5.756e^-4	0.977	UPSTREAM aret INTRON aret
2R	17419363	2R_17419363_SNP [dm3] 2R_21531858_SNP [dm6]	G	T	5.757e^-4	0.977	INTRON Egfr EXON CR44725
3R	16337387	3R_16337387_SNP [dm3] 3R_20511665_SNP [dm6]	T	A	5.772e^-4	0.977	INTRON CG4288	TF binding site mE1_TFBS_sbb
3L	15779371	3L_15779371_SNP [dm3] 3L_15786271_SNP [dm6]	A	C	5.776e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22065940	3R_22065940_SNP [dm3] 3R_26240218_SNP [dm6]	A	C	5.791e^-4	0.977	INTRON CR42745
3R	22065953	3R_22065953_SNP [dm3] 3R_26240231_SNP [dm6]	A	T	5.791e^-4	0.977	INTRON CR42745
2R	16393256	2R_16393256_SNP [dm3] 2R_20505751_SNP [dm6]	G	C	5.812e^-4	0.977	UTR_3_PRIME Obp57a UPSTREAM CR44645 DOWNSTREAM Obp57b & 1 other
3L	16738234	3L_16738234_SNP [dm3] 3L_16745134_SNP [dm6]	A	G	5.814e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16544503	3L_16544503_SNP [dm3] 3L_16551403_SNP [dm6]	A	G	5.816e^-4	0.977	INTERGENIC
3L	14367882	3L_14367882_INS [dm3] 3L_14374782_INS [dm6]	C	CC	5.824e^-4	0.977	INTERGENIC
2R	10286867	2R_10286867_SNP [dm3] 2R_14399362_SNP [dm6]	C	A	5.833e^-4	0.977	INTERGENIC
2L	20874914	2L_20874914_SNP [dm3] 2L_20874914_SNP [dm6]	T	C	5.834e^-4	0.977	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	17476332	3L_17476332_SNP [dm3] 3L_17483232_SNP [dm6]	A	G	5.839e^-4	0.977	INTRON CG6333
3L	13204886	3L_13204886_SNP [dm3] 3L_13211786_SNP [dm6]	A	G	5.899e^-4	0.977	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11068401	2L_11068401_SNP [dm3] 2L_11068401_SNP [dm6]	A	C	5.901e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17512236	3R_17512236_SNP [dm3] 3R_21686514_SNP [dm6]	G	A	5.920e^-4	0.977	INTRON CG31176	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14807764	3L_14807764_SNP [dm3] 3L_14814664_SNP [dm6]	T	G	5.924e^-4	0.977	INTRON CG17839
X	19919225	X_19919225_SNP [dm3] X_20025192_SNP [dm6]	C	A	5.947e^-4	0.977	DOWNSTREAM tRNA:CR32826 INTRON Dop2R
X	19919254	X_19919254_SNP [dm3] X_20025221_SNP [dm6]	A	T	5.947e^-4	0.977	DOWNSTREAM tRNA:CR32826 INTRON Dop2R
3L	8319826	3L_8319826_SNP [dm3] 3L_8326726_SNP [dm6]	A	T	5.949e^-4	0.977	INTRON CG34461	TF binding site mE1_TFBS_cad
2R	3074911	2R_3074911_SNP [dm3] 2R_7187406_SNP [dm6]	C	A	5.950e^-4	0.977	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	6204209	2L_6204209_SNP [dm3] 2L_6204209_SNP [dm6]	C	T	5.978e^-4	0.977	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13918819	3R_13918819_SNP [dm3] 3R_18093097_SNP [dm6]	C	A	6.010e^-4	0.977	INTRON sr
X	14764068	X_14764068_SNP [dm3] X_14870035_SNP [dm6]	C	T	6.037e^-4	0.977	INTRON Flo2 & 1 other
3R	18895169	3R_18895169_SNP [dm3] 3R_23069447_SNP [dm6]	G	A	6.049e^-4	0.977	INTERGENIC
X	20560224	X_20560224_DEL [dm3] X_20689197_DEL [dm6]	TG	A	6.054e^-4	0.977	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	20561396	X_20561396_SNP [dm3] X_20690369_SNP [dm6]	G	A	6.054e^-4	0.977	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20561486	X_20561486_SNP [dm3] X_20690459_SNP [dm6]	G	T	6.054e^-4	0.977	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20561491	X_20561491_SNP [dm3] X_20690464_SNP [dm6]	C	T	6.054e^-4	0.977	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20564528	X_20564528_SNP [dm3] X_20693501_SNP [dm6]	T	C	6.054e^-4	0.977	UPSTREAM run INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20566630	X_20566630_SNP [dm3] X_20695603_SNP [dm6]	A	G	6.054e^-4	0.977	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1599810	3L_1599810_SNP [dm3] 3L_1599810_SNP [dm6]	T	C	6.058e^-4	0.977	SYNONYMOUS_CODING CG13917 DOWNSTREAM CG12104	TF binding site mE1_TFBS_sens
3R	22796502	3R_22796502_SNP [dm3] 3R_26970780_SNP [dm6]	T	C	6.064e^-4	0.977	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
3L	1863369	3L_1863369_SNP [dm3] 3L_1863369_SNP [dm6]	T	C	6.072e^-4	0.977	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6766521	X_6766521_SNP [dm3] X_6872488_SNP [dm6]	C	A	6.080e^-4	0.977	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8631373	2L_8631373_SNP [dm3] 2L_8631373_SNP [dm6]	C	T	6.089e^-4	0.977	INTRON Sema-1a	TF binding site mE1_TFBS_inv
X	4442039	X_4442039_SNP [dm3] X_4548006_SNP [dm6]	G	A	6.098e^-4	0.977	SYNONYMOUS_CODING Usf INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	17094992	X_17094992_SNP [dm3] X_17200959_SNP [dm6]	G	A	6.119e^-4	0.977	SYNONYMOUS_CODING CG8918 DOWNSTREAM baz
X	17095001	X_17095001_SNP [dm3] X_17200968_SNP [dm6]	A	G	6.119e^-4	0.977	SYNONYMOUS_CODING CG8918 DOWNSTREAM baz
2R	10034346	2R_10034346_SNP [dm3] 2R_14146841_SNP [dm6]	C	T	6.120e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16186803	X_16186803_SNP [dm3] X_16292770_SNP [dm6]	A	G	6.128e^-4	0.977	INTRON caz
2R	4921443	2R_4921443_SNP [dm3] 2R_9033938_SNP [dm6]	C	T	6.139e^-4	0.977	INTERGENIC
X	4478142	X_4478142_SNP [dm3] X_4584109_SNP [dm6]	C	T	6.140e^-4	0.977	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	7759921	3R_7759921_SNP [dm3] 3R_11934199_SNP [dm6]	G	A	6.151e^-4	0.977	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27816266	3R_27816266_SNP [dm3] 3R_31990544_SNP [dm6]	G	A	6.157e^-4	0.977	SYNONYMOUS_CODING CG2003 UTR_3_PRIME CG2003 INTRON heph
3R	27816314	3R_27816314_SNP [dm3] 3R_31990592_SNP [dm6]	C	T	6.157e^-4	0.977	SYNONYMOUS_CODING CG2003 UTR_3_PRIME CG2003 INTRON heph
2L	14748914	2L_14748914_SNP [dm3] 2L_14748914_SNP [dm6]	C	T	6.174e^-4	0.977	INTERGENIC
3L	6845407	3L_6845407_SNP [dm3] 3L_6852307_SNP [dm6]	G	A	6.179e^-4	0.977	INTERGENIC
2R	11537354	2R_11537354_SNP [dm3] 2R_15649849_SNP [dm6]	A	G	6.185e^-4	0.977	INTRON CG42524
3L	8515485	3L_8515485_SNP [dm3] 3L_8522385_SNP [dm6]	A	G	6.192e^-4	0.977	DOWNSTREAM GstO2 & 1 other INTRON GstO2
3L	8515498	3L_8515498_SNP [dm3] 3L_8522398_SNP [dm6]	C	A	6.192e^-4	0.977	DOWNSTREAM GstO2 & 1 other INTRON GstO2
3L	8515663	3L_8515663_SNP [dm3] 3L_8522563_SNP [dm6]	C	G	6.192e^-4	0.977	SYNONYMOUS_CODING GstO2 INTRON GstO2
3L	8516494	3L_8516494_SNP [dm3] 3L_8523394_SNP [dm6]	A	C	6.192e^-4	0.977	DOWNSTREAM GstO1 INTRON GstO2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3L	8519303	3L_8519303_SNP [dm3] 3L_8526203_SNP [dm6]	T	C	6.192e^-4	0.977	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8521778	3L_8521778_SNP [dm3] 3L_8528678_SNP [dm6]	C	T	6.192e^-4	0.977	UPSTREAM foi INTRON foi
3L	12855919	3L_12855919_SNP [dm3] 3L_12862819_SNP [dm6]	A	G	6.193e^-4	0.977	UTR_5_PRIME CG10943
2L	5198589	2L_5198589_SNP [dm3] 2L_5198589_SNP [dm6]	A	G	6.196e^-4	0.977	INTRON Msp300	TF binding site mE1_TFBS_chinmo
X	6497869	X_6497869_SNP [dm3] X_6603836_SNP [dm6]	G	C	6.198e^-4	0.977	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14807541	3L_14807541_SNP [dm3] 3L_14814441_SNP [dm6]	A	G	6.207e^-4	0.977	INTRON CG17839
2L	14146048	2L_14146048_SNP [dm3] 2L_14146048_SNP [dm6]	A	G	6.207e^-4	0.977	INTRON CG17341
3L	6494092	3L_6494092_SNP [dm3] 3L_6500992_SNP [dm6]	A	G	6.211e^-4	0.977	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	11878435	3L_11878435_SNP [dm3] 3L_11885335_SNP [dm6]	C	G	6.215e^-4	0.977	INTRON CG44837
3L	6333997	3L_6333997_DEL [dm3] 3L_6340897_DEL [dm6]	TGG	T	6.215e^-4	0.977	INTRON CG13300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13895546	3R_13895546_SNP [dm3] 3R_18069824_SNP [dm6]	A	G	6.221e^-4	0.977	INTERGENIC
2L	720464	2L_720464_SNP [dm3] 2L_720464_SNP [dm6]	A	G	6.229e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19090182	3L_19090182_SNP [dm3] 3L_19097082_SNP [dm6]	C	T	6.253e^-4	0.977	NON_SYNONYMOUS_CODING CG10424 UPSTREAM CG11577 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8869723	2L_8869723_SNP [dm3] 2L_8869723_SNP [dm6]	G	A	6.260e^-4	0.977	DOWNSTREAM CR44414 INTERGENIC
3L	4185761	3L_4185761_SNP [dm3] 3L_4185761_SNP [dm6]	T	C	6.261e^-4	0.977	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3R	8113054	3R_8113054_SNP [dm3] 3R_12287332_SNP [dm6]	G	C	6.264e^-4	0.977	INTRON svp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23453396	3R_23453396_SNP [dm3] 3R_27627674_SNP [dm6]	A	G	6.266e^-4	0.977	INTRON Tusp
3R	23453436	3R_23453436_SNP [dm3] 3R_27627714_SNP [dm6]	T	C	6.266e^-4	0.977	INTRON Tusp
3R	17701883	3R_17701883_SNP [dm3] 3R_21876161_SNP [dm6]	C	A	6.268e^-4	0.977	INTRON CG6656
3L	9898719	3L_9898719_SNP [dm3] 3L_9905619_SNP [dm6]	T	C	6.274e^-4	0.977	INTERGENIC
X	7441431	X_7441431_SNP [dm3] X_7547398_SNP [dm6]	T	A	6.274e^-4	0.977	INTRON CG32719
2L	638849	2L_638849_SNP [dm3] 2L_638849_SNP [dm6]	T	C	6.281e^-4	0.977	INTERGENIC
3L	4077448	3L_4077448_SNP [dm3] 3L_4077448_SNP [dm6]	T	A	6.283e^-4	0.977	INTRON Gad1
X	12212465	X_12212465_SNP [dm3] X_12318432_SNP [dm6]	T	C	6.300e^-4	0.977	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7805677	2R_7805677_SNP [dm3] 2R_11918172_SNP [dm6]	A	G	6.306e^-4	0.977	EXON CR44305
3R	22249386	3R_22249386_SNP [dm3] 3R_26423664_SNP [dm6]	T	A	6.330e^-4	0.977	INTERGENIC
3L	15777997	3L_15777997_SNP [dm3] 3L_15784897_SNP [dm6]	G	C	6.337e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20531940	2L_20531940_SNP [dm3] 2L_20531940_SNP [dm6]	A	G	6.339e^-4	0.977	DOWNSTREAM CG44270 INTERGENIC
3R	9720388	3R_9720388_SNP [dm3] 3R_13894666_SNP [dm6]	A	G	6.340e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13135956	2L_13135956_SNP [dm3] 2L_13135956_SNP [dm6]	A	T	6.345e^-4	0.977	INTERGENIC
2L	11181241	2L_11181241_SNP [dm3] 2L_11181241_SNP [dm6]	A	T	6.345e^-4	0.977	DOWNSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6884982	2R_6884982_SNP [dm3] 2R_10997477_SNP [dm6]	C	T	6.351e^-4	0.977	INTRON luna
2L	15930004	2L_15930004_SNP [dm3] 2L_15930004_SNP [dm6]	T	A	6.357e^-4	0.977	INTRON beat-Ib
3L	8843309	3L_8843309_SNP [dm3] 3L_8850209_SNP [dm6]	T	C	6.360e^-4	0.977	INTRON dally
X	13873994	X_13873994_SNP [dm3] X_13979961_SNP [dm6]	C	T	6.362e^-4	0.977	INTRON mamo
2L	16734618	2L_16734618_SNP [dm3] 2L_16734618_SNP [dm6]	T	C	6.364e^-4	0.977	SYNONYMOUS_CODING glu DOWNSTREAM CG17904	TF binding site mE1_TFBS_sens
3R	25449596	3R_25449596_SNP [dm3] 3R_29623874_SNP [dm6]	A	G	6.374e^-4	0.977	INTERGENIC
2L	16216057	2L_16216057_SNP [dm3] 2L_16216057_SNP [dm6]	G	A	6.374e^-4	0.977	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10328270	2R_10328270_SNP [dm3] 2R_14440765_SNP [dm6]	C	A	6.406e^-4	0.977	INTRON Oaz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27819505	3R_27819505_SNP [dm3] 3R_31993783_SNP [dm6]	T	C	6.411e^-4	0.977	UPSTREAM heph INTRON heph
3L	3534586	3L_3534586_SNP [dm3] 3L_3534586_SNP [dm6]	C	A	6.413e^-4	0.977	INTRON Eip63E
X	5532353	X_5532353_SNP [dm3] X_5638320_SNP [dm6]	T	G	6.425e^-4	0.977	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5532356	X_5532356_SNP [dm3] X_5638323_SNP [dm6]	G	C	6.425e^-4	0.977	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5469486	X_5469486_SNP [dm3] X_5575453_SNP [dm6]	T	A	6.425e^-4	0.977	INTERGENIC
X	5469489	X_5469489_SNP [dm3] X_5575456_SNP [dm6]	A	G	6.425e^-4	0.977	INTERGENIC
2L	6339302	2L_6339302_SNP [dm3] 2L_6339302_SNP [dm6]	C	T	6.439e^-4	0.977	UPSTREAM Pez & 1 other INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11293211	2R_11293211_SNP [dm3] 2R_15405706_SNP [dm6]	T	C	6.452e^-4	0.977	DOWNSTREAM CR45020 INTRON CG43729
3L	13916644	3L_13916644_SNP [dm3] 3L_13923544_SNP [dm6]	G	A	6.456e^-4	0.977	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12081426	3L_12081426_INS [dm3] 3L_12088326_INS [dm6]	T	TAGAT	6.457e^-4	0.977	UPSTREAM CG17154 INTERGENIC
2R	6884984	2R_6884984_SNP [dm3] 2R_10997479_SNP [dm6]	C	G	6.458e^-4	0.977	INTRON luna
3L	10881797	3L_10881797_SNP [dm3] 3L_10888697_SNP [dm6]	A	T	6.486e^-4	0.977	INTERGENIC
2R	11037799	2R_11037799_SNP [dm3] 2R_15150294_SNP [dm6]	G	T	6.486e^-4	0.977	DOWNSTREAM CG7544 INTERGENIC
2L	20532047	2L_20532047_SNP [dm3] 2L_20532047_SNP [dm6]	A	C	6.494e^-4	0.977	DOWNSTREAM CG44270 INTERGENIC
X	19023039	X_19023039_SNP [dm3] X_19129006_SNP [dm6]	C	T	6.494e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16311532	2R_16311532_SNP [dm3] 2R_20424027_SNP [dm6]	C	G	6.510e^-4	0.977	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16311534	2R_16311534_SNP [dm3] 2R_20424029_SNP [dm6]	A	T	6.510e^-4	0.977	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6308105	3L_6308105_SNP [dm3] 3L_6315005_SNP [dm6]	A	C	6.543e^-4	0.977	INTERGENIC
3L	6308812	3L_6308812_SNP [dm3] 3L_6315712_SNP [dm6]	G	A	6.543e^-4	0.977	INTERGENIC
X	3906728	X_3906728_SNP [dm3] X_4012695_SNP [dm6]	T	C	6.544e^-4	0.977	INTERGENIC
3L	9898681	3L_9898681_SNP [dm3] 3L_9905581_SNP [dm6]	C	A	6.545e^-4	0.977	INTERGENIC
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	6.546e^-4	0.977	UPSTREAM tRNA:H:56E INTERGENIC
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	6.546e^-4	0.977	UPSTREAM tRNA:H:56E INTERGENIC
3L	16822690	3L_16822690_SNP [dm3] 3L_16829590_SNP [dm6]	T	C	6.550e^-4	0.977	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
X	11357231	X_11357231_SNP [dm3] X_11463198_SNP [dm6]	T	C	6.554e^-4	0.977	INTRON CG43155
3L	6431028	3L_6431028_SNP [dm3] 3L_6437928_SNP [dm6]	G	C	6.555e^-4	0.977	INTRON CG42747
3R	17701832	3R_17701832_SNP [dm3] 3R_21876110_SNP [dm6]	A	C	6.558e^-4	0.977	INTRON CG6656
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	6.566e^-4	0.977	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	26381589	3R_26381589_SNP [dm3] 3R_30555867_SNP [dm6]	C	T	6.568e^-4	0.977	UTR_3_PRIME CG34155 INTRON tmod
3L	11555846	3L_11555846_SNP [dm3] 3L_11562746_SNP [dm6]	T	G	6.568e^-4	0.977	UTR_5_PRIME CG7394 UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	24246214	3L_24246214_SNP [dm3] 3L_24253114_SNP [dm6]	G	T	6.569e^-4	0.977	INTRON Snap25
3R	7092222	3R_7092222_SNP [dm3] 3R_11266500_SNP [dm6]	T	C	6.573e^-4	0.977	INTERGENIC
2R	4106257	2R_4106257_SNP [dm3] 2R_8218752_SNP [dm6]	T	A	6.580e^-4	0.977	INTRON LRP1
2L	8634824	2L_8634824_SNP [dm3] 2L_8634824_SNP [dm6]	C	T	6.592e^-4	0.977	INTRON Sema-1a
3L	9768478	3L_9768478_SNP [dm3] 3L_9775378_SNP [dm6]	A	T	6.593e^-4	0.977	INTRON CG8177
3R	20712960	3R_20712960_SNP [dm3] 3R_24887238_SNP [dm6]	T	G	6.609e^-4	0.977	INTRON CG31121	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7085536	3L_7085536_SNP [dm3] 3L_7092436_SNP [dm6]	T	C	6.611e^-4	0.977	UPSTREAM Cpr65Ec INTERGENIC
2R	17144884	2R_17144884_SNP [dm3] 2R_21257379_SNP [dm6]	A	G	6.618e^-4	0.977	UTR_5_PRIME Rgk3 INTRON Rgk3
2R	9777037	2R_9777037_SNP [dm3] 2R_13889532_SNP [dm6]	T	C	6.625e^-4	0.977	NON_SYNONYMOUS_CODING shot INTRON shot
3L	7695234	3L_7695234_SNP [dm3] 3L_7702134_SNP [dm6]	C	A	6.653e^-4	0.977	INTRON CG32373 & 1 other
X	5936796	X_5936796_SNP [dm3] X_6042763_SNP [dm6]	T	C	6.668e^-4	0.977	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
3L	19027789	3L_19027789_SNP [dm3] 3L_19034689_SNP [dm6]	C	T	6.671e^-4	0.977	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5405295	2L_5405295_SNP [dm3] 2L_5405295_SNP [dm6]	T	G	6.674e^-4	0.977	INTRON H15
3R	14992796	3R_14992796_SNP [dm3] 3R_19167074_SNP [dm6]	C	T	6.681e^-4	0.977	INTRON sqz
3L	12101638	3L_12101638_SNP [dm3] 3L_12108538_SNP [dm6]	A	T	6.684e^-4	0.977	INTERGENIC
X	11357232	X_11357232_SNP [dm3] X_11463199_SNP [dm6]	T	A	6.686e^-4	0.977	INTRON CG43155
3R	21702338	3R_21702338_SNP [dm3] 3R_25876616_SNP [dm6]	G	A	6.687e^-4	0.977	SYNONYMOUS_CODING Tsp96F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13110792	2L_13110792_INS [dm3] 2L_13110792_INS [dm6]	T	TTA	6.695e^-4	0.977	INTERGENIC
3L	2398296	3L_2398296_SNP [dm3] 3L_2398296_SNP [dm6]	G	A	6.725e^-4	0.977	INTRON CG45186	TF binding site mE1_TFBS_inv
3L	12101680	3L_12101680_SNP [dm3] 3L_12108580_SNP [dm6]	A	C	6.739e^-4	0.977	INTERGENIC
2R	12194267	2R_12194267_SNP [dm3] 2R_16306762_SNP [dm6]	C	T	6.749e^-4	0.977	UPSTREAM Nox & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9973088	X_9973088_SNP [dm3] X_10079055_SNP [dm6]	T	C	6.752e^-4	0.977	SYNONYMOUS_CODING ZAP3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10286756	2R_10286756_INS [dm3] 2R_14399251_INS [dm6]	T	TA	6.759e^-4	0.977	INTERGENIC
2L	14149713	2L_14149713_SNP [dm3] 2L_14149713_SNP [dm6]	T	G	6.774e^-4	0.977	INTRON CG17341
2R	20528758	2R_20528758_SNP [dm3] 2R_24641235_SNP [dm6]	G	A	6.786e^-4	0.977	SYNONYMOUS_CODING CG4781 DOWNSTREAM CG3640	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	21305381	X_21305381_SNP [dm3] X_21434354_SNP [dm6]	C	T	6.787e^-4	0.977	INTRON CG42343	transposable element FlyBase
3L	16774059	3L_16774059_SNP [dm3] 3L_16780959_SNP [dm6]	G	A	6.789e^-4	0.977	INTRON CG9705	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2341134	2L_2341134_SNP [dm3] 2L_2341134_SNP [dm6]	C	A	6.790e^-4	0.977	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad
2L	5410600	2L_5410600_SNP [dm3] 2L_5410600_SNP [dm6]	G	T	6.821e^-4	0.977	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19721181	X_19721181_SNP [dm3] X_19827148_SNP [dm6]	T	A	6.827e^-4	0.977	INTERGENIC
3L	4263834	3L_4263834_SNP [dm3] 3L_4263834_SNP [dm6]	A	C	6.839e^-4	0.977	UTR_5_PRIME CG1273 DOWNSTREAM VhaM9.7-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11244716	2L_11244716_SNP [dm3] 2L_11244716_SNP [dm6]	A	T	6.842e^-4	0.977	INTRON ab
3L	9344987	3L_9344987_SNP [dm3] 3L_9351887_SNP [dm6]	T	C	6.844e^-4	0.977	DOWNSTREAM PGRP-LF INTRON UGP
X	1088159	X_1088159_SNP [dm3] X_1194126_SNP [dm6]	T	C	6.861e^-4	0.977	INTRON CG11380
X	1088163	X_1088163_INS [dm3] X_1194130_INS [dm6]	T	TAACT	6.861e^-4	0.977	INTRON CG11380
X	1088166	X_1088166_SNP [dm3] X_1194133_SNP [dm6]	A	T	6.861e^-4	0.977	INTRON CG11380
2R	15213466	2R_15213466_SNP [dm3] 2R_19325961_SNP [dm6]	C	A	6.863e^-4	0.977	NON_SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2R	9715871	2R_9715871_SNP [dm3] 2R_13828366_SNP [dm6]	C	T	6.864e^-4	0.977	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
2L	19295574	2L_19295574_SNP [dm3] 2L_19295574_SNP [dm6]	C	A	6.872e^-4	0.977	INTERGENIC
X	19994507	X_19994507_SNP [dm3] X_20100474_SNP [dm6]	T	A	6.889e^-4	0.977	INTERGENIC	transposable element FlyBase
3L	14083946	3L_14083946_SNP [dm3] 3L_14090846_SNP [dm6]	G	C	6.895e^-4	0.977	INTERGENIC
3R	16552486	3R_16552486_SNP [dm3] 3R_20726764_SNP [dm6]	G	A	6.903e^-4	0.977	INTERGENIC
3L	11555596	3L_11555596_SNP [dm3] 3L_11562496_SNP [dm6]	T	A	6.912e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	6996569	3L_6996569_SNP [dm3] 3L_7003469_SNP [dm6]	C	A	6.916e^-4	0.977	INTRON Mp
3L	21968767	3L_21968767_SNP [dm3] 3L_21975667_SNP [dm6]	T	C	6.919e^-4	0.977	INTRON CG7470
2L	11819312	2L_11819312_SNP [dm3] 2L_11819312_SNP [dm6]	A	G	6.924e^-4	0.977	INTRON Pde1c
2L	1601630	2L_1601630_SNP [dm3] 2L_1601630_SNP [dm6]	C	T	6.945e^-4	0.977	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14038148	2L_14038148_SNP [dm3] 2L_14038148_SNP [dm6]	G	T	6.955e^-4	0.977	EXON CR45284
2L	14038166	2L_14038166_SNP [dm3] 2L_14038166_SNP [dm6]	G	A	6.955e^-4	0.977	EXON CR45284
2R	10656143	2R_10656143_SNP [dm3] 2R_14768638_SNP [dm6]	A	T	6.961e^-4	0.977	DOWNSTREAM CG42254 INTRON Spred	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18204615	2R_18204615_SNP [dm3] 2R_22317110_SNP [dm6]	G	C	6.968e^-4	0.977	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10062620	3L_10062620_SNP [dm3] 3L_10069520_SNP [dm6]	C	G	6.969e^-4	0.977	INTRON dpr6
3R	18190609	3R_18190609_SNP [dm3] 3R_22364887_SNP [dm6]	G	A	6.969e^-4	0.977	SYNONYMOUS_CODING CG5382 DOWNSTREAM CG7071 & 1 other	TF binding site mE1_TFBS_chinmo
X	3466028	X_3466028_SNP [dm3] X_3571995_SNP [dm6]	T	C	6.973e^-4	0.977	SPLICE_SITE_REGION CG2875 UTR_3_PRIME ppk8 UPSTREAM CG32791 INTRON CG2875
2R	7109269	2R_7109269_SNP [dm3] 2R_11221764_SNP [dm6]	G	A	6.987e^-4	0.977	INTRON Syx6
3L	12101676	3L_12101676_SNP [dm3] 3L_12108576_SNP [dm6]	A	C	7.008e^-4	0.977	INTERGENIC
2L	9731153	2L_9731153_SNP [dm3] 2L_9731153_SNP [dm6]	T	G	7.008e^-4	0.977	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8835547	2L_8835547_SNP [dm3] 2L_8835547_SNP [dm6]	T	C	7.021e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	12571050	3R_12571050_SNP [dm3] 3R_16745328_SNP [dm6]	A	G	7.027e^-4	0.977	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12541791	3L_12541791_SNP [dm3] 3L_12548691_SNP [dm6]	A	T	7.040e^-4	0.977	INTRON sowah
2L	5414619	2L_5414619_SNP [dm3] 2L_5414619_SNP [dm6]	C	T	7.041e^-4	0.977	INTRON H15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5236765	3L_5236765_SNP [dm3] 3L_5243665_SNP [dm6]	C	A	7.048e^-4	0.977	INTRON shep
2L	15532958	2L_15532958_SNP [dm3] 2L_15532958_SNP [dm6]	T	C	7.053e^-4	0.977	INTERGENIC
X	12704030	X_12704030_SNP [dm3] X_12809997_SNP [dm6]	G	A	7.068e^-4	0.977	INTRON Pde9
3L	8319827	3L_8319827_SNP [dm3] 3L_8326727_SNP [dm6]	A	G	7.072e^-4	0.977	INTRON CG34461	TF binding site mE1_TFBS_cad
2L	11820968	2L_11820968_SNP [dm3] 2L_11820968_SNP [dm6]	T	G	7.089e^-4	0.977	INTRON Pde1c
2L	12230828	2L_12230828_SNP [dm3] 2L_12230828_SNP [dm6]	A	G	7.093e^-4	0.977	INTRON aret
3L	12283285	3L_12283285_SNP [dm3] 3L_12290185_SNP [dm6]	C	T	7.103e^-4	0.977	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9950515	3R_9950515_SNP [dm3] 3R_14124793_SNP [dm6]	G	T	7.109e^-4	0.977	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
2R	17936119	2R_17936119_SNP [dm3] 2R_22048614_SNP [dm6]	G	A	7.124e^-4	0.977	INTERGENIC
3R	10243482	3R_10243482_DEL [dm3] 3R_14417760_DEL [dm6]	AA	A	7.130e^-4	0.977	UPSTREAM natalisin INTRON cv-c
2R	7621302	2R_7621302_SNP [dm3] 2R_11733797_SNP [dm6]	G	A	7.145e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10441603	2L_10441603_SNP [dm3] 2L_10441603_SNP [dm6]	T	A	7.148e^-4	0.977	UPSTREAM loh DOWNSTREAM CG13142 & 1 other INTERGENIC
X	19561992	X_19561992_SNP [dm3] X_19667959_SNP [dm6]	C	T	7.152e^-4	0.977	UPSTREAM CR44512 INTRON Zw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5963598	3R_5963598_SNP [dm3] 3R_10137876_SNP [dm6]	A	G	7.154e^-4	0.977	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11942500	3R_11942500_SNP [dm3] 3R_16116778_SNP [dm6]	G	T	7.159e^-4	0.977	INTRON Sb
2L	19476574	2L_19476574_SNP [dm3] 2L_19476574_SNP [dm6]	C	G	7.162e^-4	0.977	INTERGENIC
3L	9368439	3L_9368439_SNP [dm3] 3L_9375339_SNP [dm6]	C	A	7.191e^-4	0.977	UPSTREAM CG4461 DOWNSTREAM Hsp22 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14807505	3L_14807505_SNP [dm3] 3L_14814405_SNP [dm6]	G	T	7.203e^-4	0.977	INTRON CG17839
2L	20472741	2L_20472741_SNP [dm3] 2L_20472741_SNP [dm6]	A	C	7.208e^-4	0.977	DOWNSTREAM CG43233 INTRON CR44980
2R	9325723	2R_9325723_SNP [dm3] 2R_13438218_SNP [dm6]	A	T	7.211e^-4	0.977	UPSTREAM CG42321 DOWNSTREAM tRNA:CR30509 INTRON CG42321	TF binding site BDTNP1_TFBS_dl
3R	16997378	3R_16997378_SNP [dm3] 3R_21171656_SNP [dm6]	A	T	7.219e^-4	0.977	INTRON SNF4Agamma
X	8280475	X_8280475_SNP [dm3] X_8386442_SNP [dm6]	C	T	7.219e^-4	0.977	SYNONYMOUS_CODING CG1387	TF binding site mE1_TFBS_chinmo
2R	11132781	2R_11132781_SNP [dm3] 2R_15245276_SNP [dm6]	A	T	7.228e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
2L	13007121	2L_13007121_DEL [dm3] 2L_13007121_DEL [dm6]	TT	T	7.232e^-4	0.977	INTRON Tor
X	18723401	X_18723401_SNP [dm3] X_18829368_SNP [dm6]	T	A	7.233e^-4	0.977	UTR_3_PRIME CG42450
2L	9991289	2L_9991289_SNP [dm3] 2L_9991289_SNP [dm6]	C	T	7.246e^-4	0.977	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19072909	X_19072909_SNP [dm3] X_19178876_SNP [dm6]	A	T	7.260e^-4	0.977	INTRON CG7556
3R	10738417	3R_10738417_SNP [dm3] 3R_14912695_SNP [dm6]	C	A	7.261e^-4	0.977	INTERGENIC
3L	12050060	3L_12050060_SNP [dm3] 3L_12056960_SNP [dm6]	T	G	7.274e^-4	0.977	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8284285	2L_8284285_SNP [dm3] 2L_8284285_SNP [dm6]	A	T	7.276e^-4	0.977	INTRON Btk29A	TF binding site mE1_TFBS_inv
3L	9058152	3L_9058152_SNP [dm3] 3L_9065052_SNP [dm6]	C	T	7.288e^-4	0.977	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9774557	2L_9774557_SNP [dm3] 2L_9774557_SNP [dm6]	C	G	7.289e^-4	0.977	SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_sens
X	20525607	X_20525607_SNP [dm3] X_20654580_SNP [dm6]	T	G	7.290e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3293388	2L_3293388_SNP [dm3] 2L_3293388_SNP [dm6]	A	G	7.292e^-4	0.977	SYNONYMOUS_CODING CG9664	TF binding site mE1_TFBS_chinmo
2L	14355759	2L_14355759_SNP [dm3] 2L_14355759_SNP [dm6]	A	T	7.314e^-4	0.977	UPSTREAM l_2_34Fd INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14355836	2L_14355836_DEL [dm3] 2L_14355836_DEL [dm6]	AA	A	7.314e^-4	0.977	UPSTREAM l_2_34Fd INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11841696	2L_11841696_SNP [dm3] 2L_11841696_SNP [dm6]	G	C	7.327e^-4	0.977	UTR_3_PRIME CG44008 UPSTREAM CR43936 DOWNSTREAM CG31704 INTRON Pde1c
3L	11555913	3L_11555913_SNP [dm3] 3L_11562813_SNP [dm6]	T	C	7.327e^-4	0.977	UTR_5_PRIME CG7394 UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2R	9309367	2R_9309367_SNP [dm3] 2R_13421862_SNP [dm6]	T	A	7.331e^-4	0.977	SYNONYMOUS_CODING CG42321
3R	19851389	3R_19851389_SNP [dm3] 3R_24025667_SNP [dm6]	G	C	7.347e^-4	0.977	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20140383	X_20140383_SNP [dm3] X_20269357_SNP [dm6]	G	A	7.348e^-4	0.977	SYNONYMOUS_CODING Inx6	TF binding site mE1_TFBS_chinmo
3L	4433897	3L_4433897_SNP [dm3] 3L_4433897_SNP [dm6]	T	C	7.353e^-4	0.977	SYNONYMOUS_CODING nAChRbeta1
3R	23667873	3R_23667873_INS [dm3] 3R_27842151_INS [dm6]	G	GA	7.353e^-4	0.977	INTRON CG34353
3L	2699734	3L_2699734_SNP [dm3] 3L_2699734_SNP [dm6]	G	A	7.364e^-4	0.977	INTRON Fife
2R	5447117	2R_5447117_SNP [dm3] 2R_9559612_SNP [dm6]	C	T	7.376e^-4	0.977	SYNONYMOUS_CODING Or45b EXON CR45281	TF binding site mE1_TFBS_HSA
3L	2505872	3L_2505872_SNP [dm3] 3L_2505872_SNP [dm6]	A	C	7.388e^-4	0.977	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6452084	2L_6452084_SNP [dm3] 2L_6452084_SNP [dm6]	T	G	7.399e^-4	0.977	INTRON retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13588059	3R_13588059_SNP [dm3] 3R_17762337_SNP [dm6]	G	A	7.430e^-4	0.977	UTR_5_PRIME TyrR
3R	23667250	3R_23667250_SNP [dm3] 3R_27841528_SNP [dm6]	C	T	7.433e^-4	0.977	INTRON CG34353
2L	3373962	2L_3373962_SNP [dm3] 2L_3373962_SNP [dm6]	T	C	7.446e^-4	0.977	UPSTREAM CG34394 INTRON CG15412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14151719	2L_14151719_SNP [dm3] 2L_14151719_SNP [dm6]	G	C	7.447e^-4	0.977	INTRON CG17341
2L	937824	2L_937824_SNP [dm3] 2L_937824_SNP [dm6]	G	A	7.448e^-4	0.977	INTRON CG4341
3L	8515618	3L_8515618_SNP [dm3] 3L_8522518_SNP [dm6]	T	G	7.464e^-4	0.977	SYNONYMOUS_CODING GstO2 INTRON GstO2
2R	12889242	2R_12889242_SNP [dm3] 2R_17001737_SNP [dm6]	G	A	7.473e^-4	0.977	UPSTREAM CG6796 INTRON ste24a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555487	3L_11555487_SNP [dm3] 3L_11562387_SNP [dm6]	T	A	7.475e^-4	0.977	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	27570175	3R_27570175_SNP [dm3] 3R_31744453_SNP [dm6]	G	C	7.494e^-4	0.977	NON_SYNONYMOUS_CODING CG1896 DOWNSTREAM awd & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5581886	3L_5581886_SNP [dm3] 3L_5588786_SNP [dm6]	G	A	7.500e^-4	0.977	NON_SYNONYMOUS_CODING l_3_psg2
3R	25369375	3R_25369375_SNP [dm3] 3R_29543653_SNP [dm6]	T	A	7.520e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	13008620	3L_13008620_SNP [dm3] 3L_13015520_SNP [dm6]	C	G	7.522e^-4	0.977	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	6288777	3L_6288777_SNP [dm3] 3L_6295677_SNP [dm6]	C	T	7.524e^-4	0.977	INTERGENIC
3L	19060484	3L_19060484_SNP [dm3] 3L_19067384_SNP [dm6]	C	T	7.528e^-4	0.977	UTR_3_PRIME Mkp3 DOWNSTREAM Mkp3
3R	11514946	3R_11514946_SNP [dm3] 3R_15689224_SNP [dm6]	G	A	7.533e^-4	0.977	UTR_3_PRIME pxb DOWNSTREAM pxb
2R	11535978	2R_11535978_SNP [dm3] 2R_15648473_SNP [dm6]	A	G	7.555e^-4	0.977	INTRON CG42524
3L	15683459	3L_15683459_SNP [dm3] 3L_15690359_SNP [dm6]	T	G	7.557e^-4	0.977	INTRON CG34451	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12085062	2R_12085062_INS [dm3] 2R_16197557_INS [dm6]	A	AAATA	7.558e^-4	0.977	UTR_5_PRIME CG44243 UTR_3_PRIME CG42837 DOWNSTREAM CG44242	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Ave_Mating_Latency phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results