DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.408e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2134 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	20216108	2R_20216108_SNP [dm3] 2R_24328585_SNP [dm6]	G	T	1.311e^-7	0.246	UPSTREAM CR44810 INTRON CR44810
2R	20215213	2R_20215213_SNP [dm3] 2R_24327690_SNP [dm6]	A	G	3.459e^-7	0.324	INTRON CR44810
2L	13930052	2L_13930052_SNP [dm3] 2L_13930052_SNP [dm6]	T	C	9.226e^-7	0.577	DOWNSTREAM CG42711 INTRON Ance-3
X	3430515	X_3430515_SNP [dm3] X_3536482_SNP [dm6]	C	A	2.006e^-6	0.647	INTRON CG32791
3L	2488424	3L_2488424_SNP [dm3] 3L_2488424_SNP [dm6]	A	T	2.896e^-6	0.647	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2488440	3L_2488440_SNP [dm3] 3L_2488440_SNP [dm6]	G	T	2.916e^-6	0.647	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7871189	3R_7871189_SNP [dm3] 3R_12045467_SNP [dm6]	G	A	2.942e^-6	0.647	INTERGENIC
2R	20215851	2R_20215851_SNP [dm3] 2R_24328328_SNP [dm6]	G	T	3.407e^-6	0.647	UPSTREAM CR44810 INTRON CR44810
2R	20217082	2R_20217082_SNP [dm3] 2R_24329559_SNP [dm6]	T	A	3.927e^-6	0.647	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3L	2488423	3L_2488423_SNP [dm3] 3L_2488423_SNP [dm6]	A	C	3.983e^-6	0.647	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13427920	2L_13427920_SNP [dm3] 2L_13427920_SNP [dm6]	A	G	4.695e^-6	0.647	INTRON CG42784
2R	20217991	2R_20217991_SNP [dm3] 2R_24330468_SNP [dm6]	C	T	5.865e^-6	0.647	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	3156785	X_3156785_SNP [dm3] X_3262752_SNP [dm6]	G	T	5.928e^-6	0.647	INTRON dnc
X	3430518	X_3430518_SNP [dm3] X_3536485_SNP [dm6]	G	C	6.994e^-6	0.647	INTRON CG32791
3L	14181404	3L_14181404_SNP [dm3] 3L_14188304_SNP [dm6]	G	C	7.181e^-6	0.647	INTRON nan
2L	11644034	2L_11644034_SNP [dm3] 2L_11644034_SNP [dm6]	T	A	7.905e^-6	0.647	DOWNSTREAM CG6614 INTERGENIC
2R	20216744	2R_20216744_SNP [dm3] 2R_24329221_SNP [dm6]	C	T	8.617e^-6	0.647	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	7879020	3R_7879020_SNP [dm3] 3R_12053298_SNP [dm6]	G	T	9.077e^-6	0.647	INTERGENIC
X	3430506	X_3430506_SNP [dm3] X_3536473_SNP [dm6]	C	T	9.355e^-6	0.647	INTRON CG32791
2R	11585565	2R_11585565_SNP [dm3] 2R_15698060_SNP [dm6]	A	T	9.438e^-6	0.647	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4389085	2L_4389085_SNP [dm3] 2L_4389085_SNP [dm6]	G	A	1.022e^-5	0.647	INTRON Tps1
3L	6560042	3L_6560042_SNP [dm3] 3L_6566942_SNP [dm6]	G	A	1.043e^-5	0.647	SYNONYMOUS_CODING jv INTRON CG18769
3L	18006448	3L_18006448_SNP [dm3] 3L_18013348_SNP [dm6]	A	T	1.044e^-5	0.647	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2488448	3L_2488448_SNP [dm3] 3L_2488448_SNP [dm6]	G	A	1.079e^-5	0.647	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11585720	2R_11585720_SNP [dm3] 2R_15698215_SNP [dm6]	T	G	1.134e^-5	0.647	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9737845	2R_9737845_SNP [dm3] 2R_13850340_SNP [dm6]	C	T	1.135e^-5	0.647	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2R	11585560	2R_11585560_SNP [dm3] 2R_15698055_SNP [dm6]	C	G	1.157e^-5	0.647	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10313303	2L_10313303_SNP [dm3] 2L_10313303_SNP [dm6]	T	C	1.160e^-5	0.647	SPLICE_SITE_REGION CG5384 INTRON CG5384	TF binding site BDTNP1_TFBS_dl
2R	18381794	2R_18381794_SNP [dm3] 2R_22494289_SNP [dm6]	G	T	1.185e^-5	0.647	UTR_3_PRIME CG4610 DOWNSTREAM px
2R	20214627	2R_20214627_SNP [dm3] 2R_24327104_SNP [dm6]	G	A	1.186e^-5	0.647	INTRON CR44810
3R	4371893	3R_4371893_SNP [dm3] 3R_8546171_SNP [dm6]	T	C	1.216e^-5	0.647	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
X	20401923	X_20401923_SNP [dm3] X_20530896_SNP [dm6]	C	A	1.265e^-5	0.647	INTERGENIC
2R	20213504	2R_20213504_SNP [dm3] 2R_24325981_SNP [dm6]	T	C	1.267e^-5	0.647	INTRON CR44810
X	16290951	X_16290951_SNP [dm3] X_16396918_SNP [dm6]	T	C	1.306e^-5	0.647	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	13411607	X_13411607_SNP [dm3] X_13517574_SNP [dm6]	T	C	1.321e^-5	0.647	INTRON Neto	TF binding site BDTNP1_TFBS_dl
2L	3880016	2L_3880016_SNP [dm3] 2L_3880016_SNP [dm6]	T	C	1.343e^-5	0.647	UTR_5_PRIME capu INTRON capu
2L	2633977	2L_2633977_DEL [dm3] 2L_2633977_DEL [dm6]	TG	T	1.362e^-5	0.647	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13411608	X_13411608_SNP [dm3] X_13517575_SNP [dm6]	T	A	1.401e^-5	0.647	INTRON Neto	TF binding site BDTNP1_TFBS_dl
2R	20207935	2R_20207935_SNP [dm3] 2R_24320412_SNP [dm6]	C	T	1.420e^-5	0.647	INTERGENIC
3L	22556737	3L_22556737_DEL [dm3] 3L_22563637_DEL [dm6]	CG	C	1.431e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8177550	X_8177550_SNP [dm3] X_8283517_SNP [dm6]	T	C	1.431e^-5	0.647	INTRON nAChRalpha3
2L	11640516	2L_11640516_SNP [dm3] 2L_11640516_SNP [dm6]	A	G	1.450e^-5	0.647	INTERGENIC
2L	3376806	2L_3376806_SNP [dm3] 2L_3376806_SNP [dm6]	T	G	1.483e^-5	0.647	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20239564	2R_20239564_SNP [dm3] 2R_24352041_SNP [dm6]	G	A	1.630e^-5	0.669	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site mE1_TFBS_chinmo
2L	2633914	2L_2633914_SNP [dm3] 2L_2633914_SNP [dm6]	G	C	1.636e^-5	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19917242	2R_19917242_SNP [dm3] 2R_24029719_SNP [dm6]	G	A	1.642e^-5	0.669	SYNONYMOUS_CODING CG3163 UPSTREAM HSPC300 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	20217670	2R_20217670_DEL [dm3] 2R_24330147_DEL [dm6]	GCTGAAG	G	1.761e^-5	0.703	EXON CR44810	TF binding site mE1_TFBS_Trl
2L	12444730	2L_12444730_SNP [dm3] 2L_12444730_SNP [dm6]	T	A	1.877e^-5	0.713	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da
3L	9654121	3L_9654121_SNP [dm3] 3L_9661021_SNP [dm6]	A	T	1.900e^-5	0.713	INTRON fry	TF binding site BDTNP1_TFBS_twi
2R	12858868	2R_12858868_SNP [dm3] 2R_16971363_SNP [dm6]	T	C	1.901e^-5	0.713	EXON CR44377
2L	2633969	2L_2633969_SNP [dm3] 2L_2633969_SNP [dm6]	T	G	1.991e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18119410	3R_18119410_SNP [dm3] 3R_22293688_SNP [dm6]	T	A	2.036e^-5	0.724	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8428066	2R_8428066_SNP [dm3] 2R_12540561_SNP [dm6]	G	A	2.080e^-5	0.724	INTRON fra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19573626	3R_19573626_SNP [dm3] 3R_23747904_SNP [dm6]	C	A	2.136e^-5	0.724	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
2L	10314163	2L_10314163_SNP [dm3] 2L_10314163_SNP [dm6]	A	G	2.137e^-5	0.724	SYNONYMOUS_CODING CG5384 UPSTREAM CG4972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15305510	3L_15305510_DEL [dm3] 3L_15312410_DEL [dm6]	TTT	AG	2.207e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_sens
3L	17756004	3L_17756004_SNP [dm3] 3L_17762904_SNP [dm6]	T	A	2.238e^-5	0.724	UTR_3_PRIME CG32181 INTRON Adgf-A & 1 other
3R	18476473	3R_18476473_SNP [dm3] 3R_22650751_SNP [dm6]	T	A	2.255e^-5	0.724	INTRON CG45058
X	8177250	X_8177250_SNP [dm3] X_8283217_SNP [dm6]	A	C	2.331e^-5	0.724	INTRON nAChRalpha3
2L	3319742	2L_3319742_SNP [dm3] 2L_3319742_SNP [dm6]	T	A	2.342e^-5	0.724	UPSTREAM CG8837 INTRON CG3326	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	18489624	2R_18489624_SNP [dm3] 2R_22602119_SNP [dm6]	T	G	2.355e^-5	0.724	NON_SYNONYMOUS_CODING CG4294
3L	14580641	3L_14580641_SNP [dm3] 3L_14587541_SNP [dm6]	C	G	2.465e^-5	0.732	INTRON HGTX
X	21089702	X_21089702_SNP [dm3] X_21218675_SNP [dm6]	T	C	2.475e^-5	0.732	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20401936	X_20401936_SNP [dm3] X_20530909_SNP [dm6]	C	A	2.498e^-5	0.732	INTERGENIC
X	16403494	X_16403494_SNP [dm3] X_16509461_SNP [dm6]	C	T	2.586e^-5	0.733	INTRON para
2R	11080045	2R_11080045_SNP [dm3] 2R_15192540_SNP [dm6]	A	C	2.593e^-5	0.733	DOWNSTREAM Sfp51E INTERGENIC
3R	18118744	3R_18118744_SNP [dm3] 3R_22293022_SNP [dm6]	A	G	2.618e^-5	0.733	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010
3L	6378337	3L_6378337_SNP [dm3] 3L_6385237_SNP [dm6]	G	A	2.749e^-5	0.757	INTERGENIC
3R	18119419	3R_18119419_SNP [dm3] 3R_22293697_SNP [dm6]	C	A	2.807e^-5	0.757	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3376818	2L_3376818_SNP [dm3] 2L_3376818_SNP [dm6]	C	T	2.826e^-5	0.757	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	13411553	X_13411553_SNP [dm3] X_13517520_SNP [dm6]	G	T	2.894e^-5	0.763	INTRON Neto	TF binding site BDTNP1_TFBS_dl
X	3522579	X_3522579_DEL [dm3] X_3628546_DEL [dm6]	TT	T	3.017e^-5	0.763	INTRON AstA-R1
2L	13427908	2L_13427908_SNP [dm3] 2L_13427908_SNP [dm6]	A	G	3.029e^-5	0.763	INTRON CG42784
2R	13504293	2R_13504293_SNP [dm3] 2R_17616788_SNP [dm6]	G	A	3.158e^-5	0.763	UTR_3_PRIME CG44403 INTRON CG10936 EXON snoRNA:Or-aca4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22540278	3L_22540278_SNP [dm3] 3L_22547178_SNP [dm6]	C	T	3.203e^-5	0.763	INTERGENIC
X	8177327	X_8177327_SNP [dm3] X_8283294_SNP [dm6]	G	T	3.207e^-5	0.763	INTRON nAChRalpha3
3R	5020544	3R_5020544_SNP [dm3] 3R_9194822_SNP [dm6]	C	A	3.297e^-5	0.763	INTRON pum
2R	13504286	2R_13504286_SNP [dm3] 2R_17616781_SNP [dm6]	A	G	3.374e^-5	0.763	UTR_3_PRIME CG44403 INTRON CG10936 EXON snoRNA:Or-aca4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11031615	2L_11031615_SNP [dm3] 2L_11031615_SNP [dm6]	C	G	3.390e^-5	0.763	INTRON Samuel
3R	8488105	3R_8488105_SNP [dm3] 3R_12662383_SNP [dm6]	T	A	3.432e^-5	0.763	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11640890	2L_11640890_SNP [dm3] 2L_11640890_SNP [dm6]	C	T	3.461e^-5	0.763	INTERGENIC
2L	2633931	2L_2633931_SNP [dm3] 2L_2633931_SNP [dm6]	T	G	3.585e^-5	0.763	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12629801	2L_12629801_SNP [dm3] 2L_12629801_SNP [dm6]	A	C	3.598e^-5	0.763	INTRON Ref2
3L	1682162	3L_1682162_SNP [dm3] 3L_1682162_SNP [dm6]	T	A	3.626e^-5	0.763	INTRON CG7991
2L	20004908	2L_20004908_SNP [dm3] 2L_20004908_SNP [dm6]	G	A	3.642e^-5	0.763	INTRON CG43861
2L	16131898	2L_16131898_SNP [dm3] 2L_16131898_SNP [dm6]	A	G	3.659e^-5	0.763	INTERGENIC
2L	20029874	2L_20029874_SNP [dm3] 2L_20029874_SNP [dm6]	C	A	3.674e^-5	0.763	INTRON sNPF
3L	2254163	3L_2254163_SNP [dm3] 3L_2254163_SNP [dm6]	G	A	3.794e^-5	0.763	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	13504252	2R_13504252_INS [dm3] 2R_17616747_INS [dm6]	T	TGAAATAATAT...	3.817e^-5	0.763	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21252333	3L_21252333_SNP [dm3] 3L_21259233_SNP [dm6]	A	G	3.837e^-5	0.763	DOWNSTREAM CG43218 INTRON Eip78C
X	20641415	X_20641415_SNP [dm3] X_20770388_SNP [dm6]	T	A	3.843e^-5	0.763	UTR_3_PRIME shakB DOWNSTREAM shakB
2L	583288	2L_583288_SNP [dm3] 2L_583288_SNP [dm6]	C	A	3.894e^-5	0.763	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2759020	3L_2759020_SNP [dm3] 3L_2759020_SNP [dm6]	G	T	3.910e^-5	0.763	INTRON Mrtf	TF binding site mE1_TFBS_HSA
X	4487249	X_4487249_SNP [dm3] X_4593216_SNP [dm6]	T	A	3.925e^-5	0.763	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12853593	3L_12853593_SNP [dm3] 3L_12860493_SNP [dm6]	C	T	3.939e^-5	0.763	NON_SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3R	18118802	3R_18118802_SNP [dm3] 3R_22293080_SNP [dm6]	A	T	4.005e^-5	0.763	DOWNSTREAM mir-1010 INTRON SKIP
2L	7753667	2L_7753667_SNP [dm3] 2L_7753667_SNP [dm6]	G	A	4.068e^-5	0.763	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	5206682	3L_5206682_SNP [dm3] 3L_5213582_SNP [dm6]	A	T	4.084e^-5	0.763	INTRON shep
3R	6267480	3R_6267480_SNP [dm3] 3R_10441758_SNP [dm6]	C	T	4.124e^-5	0.763	INTERGENIC
2R	20211274	2R_20211274_SNP [dm3] 2R_24323751_SNP [dm6]	T	A	4.171e^-5	0.763	INTERGENIC
3R	5968942	3R_5968942_SNP [dm3] 3R_10143220_SNP [dm6]	T	C	4.181e^-5	0.763	INTRON TAF1B & 1 other	TF binding site mE1_TFBS_sens
2L	19931424	2L_19931424_SNP [dm3] 2L_19931424_SNP [dm6]	T	A	4.240e^-5	0.763	INTRON sick
2R	13504295	2R_13504295_SNP [dm3] 2R_17616790_SNP [dm6]	A	T	4.269e^-5	0.763	UTR_3_PRIME CG44403 INTRON CG10936 EXON snoRNA:Or-aca4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3156771	X_3156771_DEL [dm3] X_3262738_DEL [dm6]	ATAAAGTTCGCA...	A	4.321e^-5	0.763	INTRON dnc
X	5760553	X_5760553_SNP [dm3] X_5866520_SNP [dm6]	T	A	4.327e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13504255	2R_13504255_SNP [dm3] 2R_17616750_SNP [dm6]	G	A	4.345e^-5	0.763	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21454405	X_21454405_INS [dm3] X_21583378_INS [dm6]	T	TTCAGACGCCT...	4.354e^-5	0.763	UPSTREAM CR44711 INTERGENIC
2L	9625356	2L_9625356_SNP [dm3] 2L_9625356_SNP [dm6]	C	A	4.454e^-5	0.773	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2367760	3L_2367760_INS [dm3] 3L_2367760_INS [dm6]	GT	ACAA	4.564e^-5	0.784	DOWNSTREAM CG1317 INTERGENIC
X	3156752	X_3156752_SNP [dm3] X_3262719_SNP [dm6]	A	G	4.606e^-5	0.784	INTRON dnc
X	19949773	X_19949773_SNP [dm3] X_20055740_SNP [dm6]	C	T	4.687e^-5	0.784	INTRON Dop2R
X	8177289	X_8177289_SNP [dm3] X_8283256_SNP [dm6]	C	T	4.729e^-5	0.784	INTRON nAChRalpha3
2R	16608285	2R_16608285_SNP [dm3] 2R_20720780_SNP [dm6]	C	G	4.764e^-5	0.784	INTRON dpr
3L	22508916	3L_22508916_SNP [dm3] 3L_22515816_SNP [dm6]	C	G	4.955e^-5	0.784	INTERGENIC
3R	15279141	3R_15279141_SNP [dm3] 3R_19453419_SNP [dm6]	T	A	4.969e^-5	0.784	INTRON CG31221
2R	20211076	2R_20211076_SNP [dm3] 2R_24323553_SNP [dm6]	A	C	4.985e^-5	0.784	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1588106	3L_1588106_SNP [dm3] 3L_1588106_SNP [dm6]	C	T	5.022e^-5	0.784	INTRON CG13917
X	5302357	X_5302357_SNP [dm3] X_5408324_SNP [dm6]	A	G	5.107e^-5	0.784	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	5.112e^-5	0.784	INTERGENIC
X	4487263	X_4487263_SNP [dm3] X_4593230_SNP [dm6]	C	T	5.197e^-5	0.784	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5967839	3R_5967839_SNP [dm3] 3R_10142117_SNP [dm6]	A	G	5.261e^-5	0.784	SYNONYMOUS_CODING TAF1B UPSTREAM CG42759
3L	2254294	3L_2254294_SNP [dm3] 3L_2254294_SNP [dm6]	G	A	5.327e^-5	0.784	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	2759043	3L_2759043_SNP [dm3] 3L_2759043_SNP [dm6]	G	T	5.361e^-5	0.784	INTRON Mrtf	TF binding site mE1_TFBS_HSA
X	3190319	X_3190319_SNP [dm3] X_3296286_SNP [dm6]	G	T	5.365e^-5	0.784	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3190599	X_3190599_SNP [dm3] X_3296566_SNP [dm6]	A	T	5.365e^-5	0.784	INTRON dnc
2L	2353109	2L_2353109_SNP [dm3] 2L_2353109_SNP [dm6]	G	C	5.430e^-5	0.784	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13504161	2R_13504161_SNP [dm3] 2R_17616656_SNP [dm6]	A	G	5.459e^-5	0.784	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22521100	3L_22521100_SNP [dm3] 3L_22528000_SNP [dm6]	A	G	5.491e^-5	0.784	INTERGENIC
3R	7879129	3R_7879129_SNP [dm3] 3R_12053407_SNP [dm6]	G	A	5.530e^-5	0.784	INTERGENIC
3L	826993	3L_826993_SNP [dm3] 3L_826993_SNP [dm6]	T	C	5.552e^-5	0.784	UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me28S-C788b & 3 others EXON CR45184
2L	3376047	2L_3376047_SNP [dm3] 2L_3376047_SNP [dm6]	C	T	5.585e^-5	0.784	UTR_3_PRIME CG9662 UPSTREAM CG15412 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21697384	3R_21697384_SNP [dm3] 3R_25871662_SNP [dm6]	A	T	5.628e^-5	0.784	UTR_3_PRIME CG5890
2R	13504141	2R_13504141_SNP [dm3] 2R_17616636_SNP [dm6]	G	C	5.650e^-5	0.784	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26490504	3R_26490504_SNP [dm3] 3R_30664782_SNP [dm6]	G	A	5.766e^-5	0.784	EXON CR45191
2L	11772198	2L_11772198_SNP [dm3] 2L_11772198_SNP [dm6]	G	T	5.781e^-5	0.784	INTERGENIC
X	3191300	X_3191300_SNP [dm3] X_3297267_SNP [dm6]	T	A	5.920e^-5	0.784	INTRON dnc
3L	5546627	3L_5546627_SNP [dm3] 3L_5553527_SNP [dm6]	A	G	5.988e^-5	0.784	INTERGENIC
X	16403215	X_16403215_SNP [dm3] X_16509182_SNP [dm6]	C	T	5.998e^-5	0.784	INTRON para
X	3190937	X_3190937_SNP [dm3] X_3296904_SNP [dm6]	T	C	6.045e^-5	0.784	INTRON dnc
3L	18377141	3L_18377141_SNP [dm3] 3L_18384041_SNP [dm6]	A	T	6.089e^-5	0.784	INTERGENIC	TF binding site mE1_TFBS_inv
2L	949466	2L_949466_SNP [dm3] 2L_949466_SNP [dm6]	A	G	6.130e^-5	0.784	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2254257	3L_2254257_SNP [dm3] 3L_2254257_SNP [dm6]	G	C	6.132e^-5	0.784	INTRON CG1275	TF binding site mE1_TFBS_cad
X	8936019	X_8936019_SNP [dm3] X_9041986_SNP [dm6]	G	T	6.289e^-5	0.784	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20213491	2R_20213491_DEL [dm3] 2R_24325968_DEL [dm6]	TTAA	GCC	6.332e^-5	0.784	INTRON CR44810
3L	979719	3L_979719_SNP [dm3] 3L_979719_SNP [dm6]	T	C	6.335e^-5	0.784	INTRON Glut1
2R	8757217	2R_8757217_SNP [dm3] 2R_12869712_SNP [dm6]	A	G	6.365e^-5	0.784	UPSTREAM bic & 1 other EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	16158067	X_16158067_SNP [dm3] X_16264034_SNP [dm6]	C	T	6.407e^-5	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13504194	2R_13504194_SNP [dm3] 2R_17616689_SNP [dm6]	G	T	6.501e^-5	0.784	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15423608	3L_15423608_SNP [dm3] 3L_15430508_SNP [dm6]	A	T	6.554e^-5	0.784	INTERGENIC
3R	5968836	3R_5968836_SNP [dm3] 3R_10143114_SNP [dm6]	G	T	6.608e^-5	0.784	NON_SYNONYMOUS_CODING CG42759 INTRON TAF1B	TF binding site mE1_TFBS_sens
X	19663815	X_19663815_SNP [dm3] X_19769782_SNP [dm6]	T	C	6.614e^-5	0.784	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	13255429	2L_13255429_INS [dm3] 2L_13255429_INS [dm6]	T	TT	6.676e^-5	0.784	INTRON CG31728	TF binding site mE1_TFBS_cad
X	3190936	X_3190936_SNP [dm3] X_3296903_SNP [dm6]	T	C	6.836e^-5	0.784	INTRON dnc
2R	8433571	2R_8433571_SNP [dm3] 2R_12546066_SNP [dm6]	C	T	6.857e^-5	0.784	SYNONYMOUS_CODING CG33752 INTRON fra
3R	18118986	3R_18118986_SNP [dm3] 3R_22293264_SNP [dm6]	A	G	6.881e^-5	0.784	DOWNSTREAM mir-1010 INTRON SKIP
3R	23525860	3R_23525860_SNP [dm3] 3R_27700138_SNP [dm6]	G	A	6.910e^-5	0.784	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	5435954	3R_5435954_SNP [dm3] 3R_9610232_SNP [dm6]	G	A	6.918e^-5	0.784	INTRON CG8312
3R	20924614	3R_20924614_SNP [dm3] 3R_25098892_SNP [dm6]	G	A	6.927e^-5	0.784	SYNONYMOUS_CODING CG33096 UTR_5_PRIME CG33095	TF binding site mE1_TFBS_HSA
2L	18441122	2L_18441122_SNP [dm3] 2L_18441122_SNP [dm6]	A	T	6.984e^-5	0.784	DOWNSTREAM RpS26 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14616790	2L_14616790_SNP [dm3] 2L_14616790_SNP [dm6]	C	T	7.062e^-5	0.784	SYNONYMOUS_CODING Adh UTR_5_PRIME Adhr UPSTREAM Adhr INTRON osp	TF binding site mE1_TFBS_cad
3R	23374047	3R_23374047_SNP [dm3] 3R_27548325_SNP [dm6]	T	A	7.100e^-5	0.784	UTR_3_PRIME Klp98A DOWNSTREAM Gr98d	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	3190350	X_3190350_SNP [dm3] X_3296317_SNP [dm6]	A	G	7.113e^-5	0.784	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	7.146e^-5	0.784	DOWNSTREAM CG32523 INTRON CG32521
X	5760414	X_5760414_SNP [dm3] X_5866381_SNP [dm6]	C	T	7.162e^-5	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12356671	3L_12356671_SNP [dm3] 3L_12363571_SNP [dm6]	C	T	7.190e^-5	0.784	INTERGENIC
2L	1120113	2L_1120113_SNP [dm3] 2L_1120113_SNP [dm6]	G	T	7.201e^-5	0.784	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9977712	2R_9977712_SNP [dm3] 2R_14090207_SNP [dm6]	A	C	7.332e^-5	0.784	UPSTREAM CG42287 & 1 other INTRON Prosap
3L	6494571	3L_6494571_SNP [dm3] 3L_6501471_SNP [dm6]	C	T	7.477e^-5	0.784	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
X	13523897	X_13523897_SNP [dm3] X_13629864_SNP [dm6]	A	T	7.562e^-5	0.784	INTRON NFAT
X	8177325	X_8177325_SNP [dm3] X_8283292_SNP [dm6]	C	G	7.565e^-5	0.784	INTRON nAChRalpha3
2R	20249404	2R_20249404_MNP [dm3] 2R_24361881_MNP [dm6]	GAA	ATC	7.579e^-5	0.784	INTRON bs & 1 other
2R	20240992	2R_20240992_SNP [dm3] 2R_24353469_SNP [dm6]	G	T	7.710e^-5	0.784	INTRON bs & 1 other
3R	15742721	3R_15742721_SNP [dm3] 3R_19916999_SNP [dm6]	T	C	7.723e^-5	0.784	INTRON CG4465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20631081	2L_20631081_SNP [dm3] 2L_20631081_SNP [dm6]	G	A	7.803e^-5	0.784	INTERGENIC
2R	10001585	2R_10001585_SNP [dm3] 2R_14114080_SNP [dm6]	C	G	7.862e^-5	0.784	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5546621	3L_5546621_SNP [dm3] 3L_5553521_SNP [dm6]	G	A	7.881e^-5	0.784	INTERGENIC
3L	2254242	3L_2254242_SNP [dm3] 3L_2254242_SNP [dm6]	G	C	7.904e^-5	0.784	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	979987	3L_979987_SNP [dm3] 3L_979987_SNP [dm6]	A	T	7.915e^-5	0.784	INTRON Glut1
2R	19916308	2R_19916308_SNP [dm3] 2R_24028785_SNP [dm6]	A	G	7.959e^-5	0.784	UTR_5_PRIME HSPC300 UPSTREAM CG3163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	7750967	2L_7750967_INS [dm3] 2L_7750967_INS [dm6]	T	TT	7.990e^-5	0.784	INTERGENIC
3L	5528312	3L_5528312_SNP [dm3] 3L_5535212_SNP [dm6]	A	G	8.018e^-5	0.784	SYNONYMOUS_CODING CG13285
X	18367263	X_18367263_SNP [dm3] X_18473230_SNP [dm6]	T	C	8.022e^-5	0.784	INTRON CG32547
2L	15999977	2L_15999977_SNP [dm3] 2L_15999977_SNP [dm6]	G	A	8.065e^-5	0.784	UPSTREAM beat-Ic INTERGENIC
2L	3376830	2L_3376830_SNP [dm3] 2L_3376830_SNP [dm6]	C	T	8.068e^-5	0.784	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12263381	3L_12263381_SNP [dm3] 3L_12270281_SNP [dm6]	A	G	8.144e^-5	0.784	UTR_3_PRIME Pbgs DOWNSTREAM CG32100	TF binding site mE1_TFBS_cad
X	3190302	X_3190302_SNP [dm3] X_3296269_SNP [dm6]	G	A	8.164e^-5	0.784	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2563224	2L_2563224_SNP [dm3] 2L_2563224_SNP [dm6]	G	A	8.170e^-5	0.784	SYNONYMOUS_CODING Cyp309a1
2R	20253566	2R_20253566_SNP [dm3] 2R_24366043_SNP [dm6]	G	A	8.201e^-5	0.784	INTRON bs & 1 other	TF binding site mE1_TFBS_cad
2R	20260917	2R_20260917_SNP [dm3] 2R_24373394_SNP [dm6]	T	A	8.205e^-5	0.784	UPSTREAM tRNA:N5:60C INTRON bs	TF binding site mE1_TFBS_chinmo
X	1824354	X_1824354_SNP [dm3] X_1930321_SNP [dm6]	C	A	8.228e^-5	0.784	UTR_3_PRIME CG11596
3L	17762578	3L_17762578_SNP [dm3] 3L_17769478_SNP [dm6]	G	A	8.312e^-5	0.784	INTERGENIC
2R	20239014	2R_20239014_SNP [dm3] 2R_24351491_SNP [dm6]	G	A	8.364e^-5	0.784	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8412629	2R_8412629_SNP [dm3] 2R_12525124_SNP [dm6]	T	C	8.450e^-5	0.784	INTERGENIC
2L	15212232	2L_15212232_SNP [dm3] 2L_15212232_SNP [dm6]	T	A	8.468e^-5	0.784	INTERGENIC
2R	10628993	2R_10628993_SNP [dm3] 2R_14741488_SNP [dm6]	G	T	8.555e^-5	0.784	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
2L	13987572	2L_13987572_SNP [dm3] 2L_13987572_SNP [dm6]	A	T	8.560e^-5	0.784	INTRON rk
2L	16499919	2L_16499919_SNP [dm3] 2L_16499919_SNP [dm6]	A	T	8.580e^-5	0.784	INTRON Tpr2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15294725	2R_15294725_SNP [dm3] 2R_19407220_SNP [dm6]	T	C	8.607e^-5	0.784	INTRON hts
2L	2633997	2L_2633997_SNP [dm3] 2L_2633997_SNP [dm6]	T	A	8.621e^-5	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11452199	3L_11452199_SNP [dm3] 3L_11459099_SNP [dm6]	C	T	8.637e^-5	0.784	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26963390	3R_26963390_SNP [dm3] 3R_31137668_SNP [dm6]	T	C	8.659e^-5	0.784	INTRON Gycbeta100B
2L	11601244	2L_11601244_SNP [dm3] 2L_11601244_SNP [dm6]	C	A	8.669e^-5	0.784	INTRON kek2
3R	14798185	3R_14798185_SNP [dm3] 3R_18972463_SNP [dm6]	T	C	8.875e^-5	0.784	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21068192	3R_21068192_SNP [dm3] 3R_25242470_SNP [dm6]	T	A	8.888e^-5	0.784	DOWNSTREAM to & 1 other INTRON CG11854
2L	12502719	2L_12502719_SNP [dm3] 2L_12502719_SNP [dm6]	G	A	8.925e^-5	0.784	INTRON bun
X	1836571	X_1836571_SNP [dm3] X_1942538_SNP [dm6]	G	C	8.930e^-5	0.784	UTR_5_PRIME Hr4	TF binding site BDTNP1_TFBS_dl
3L	2566593	3L_2566593_SNP [dm3] 3L_2566593_SNP [dm6]	A	G	8.940e^-5	0.784	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18462674	2L_18462674_SNP [dm3] 2L_18462674_SNP [dm6]	G	A	8.957e^-5	0.784	INTRON let-7-C	TF binding site mE1_TFBS_kn
3L	22539624	3L_22539624_SNP [dm3] 3L_22546524_SNP [dm6]	A	C	8.990e^-5	0.784	INTERGENIC
2L	13873813	2L_13873813_SNP [dm3] 2L_13873813_SNP [dm6]	C	G	9.016e^-5	0.784	INTRON CenG1A
3R	18118988	3R_18118988_SNP [dm3] 3R_22293266_SNP [dm6]	C	T	9.028e^-5	0.784	DOWNSTREAM mir-1010 INTRON SKIP
2L	6067284	2L_6067284_SNP [dm3] 2L_6067284_SNP [dm6]	T	C	9.110e^-5	0.784	DOWNSTREAM CG9150 INTRON CG9147	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	9.139e^-5	0.784	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3R	21068187	3R_21068187_SNP [dm3] 3R_25242465_SNP [dm6]	T	C	9.140e^-5	0.784	DOWNSTREAM to & 1 other INTRON CG11854
2L	11772867	2L_11772867_SNP [dm3] 2L_11772867_SNP [dm6]	T	C	9.158e^-5	0.784	INTERGENIC
2L	4449824	2L_4449824_SNP [dm3] 2L_4449824_SNP [dm6]	C	T	9.164e^-5	0.784	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
2R	20249381	2R_20249381_SNP [dm3] 2R_24361858_SNP [dm6]	G	C	9.199e^-5	0.784	INTRON bs & 1 other
3L	9435992	3L_9435992_SNP [dm3] 3L_9442892_SNP [dm6]	G	C	9.243e^-5	0.784	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15307309	3L_15307309_SNP [dm3] 3L_15314209_SNP [dm6]	T	C	9.325e^-5	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6378298	3L_6378298_SNP [dm3] 3L_6385198_SNP [dm6]	C	T	9.435e^-5	0.784	INTERGENIC
3L	18030804	3L_18030804_SNP [dm3] 3L_18037704_SNP [dm6]	T	C	9.509e^-5	0.784	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20219756	2R_20219756_SNP [dm3] 2R_24332233_SNP [dm6]	G	A	9.562e^-5	0.784	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5228895	3R_5228895_SNP [dm3] 3R_9403173_SNP [dm6]	G	T	9.569e^-5	0.784	SYNONYMOUS_CODING CG9356 DOWNSTREAM CG8132	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	6029428	X_6029428_SNP [dm3] X_6135395_SNP [dm6]	G	A	9.596e^-5	0.784	INTRON Ca-alpha1T
3L	22533706	3L_22533706_SNP [dm3] 3L_22540606_SNP [dm6]	C	T	9.619e^-5	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14627093	3L_14627093_SNP [dm3] 3L_14633993_SNP [dm6]	T	C	9.644e^-5	0.784	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	6227583	2L_6227583_SNP [dm3] 2L_6227583_SNP [dm6]	G	T	9.668e^-5	0.784	DOWNSTREAM Ugt37b1 INTERGENIC
3L	5542039	3L_5542039_SNP [dm3] 3L_5548939_SNP [dm6]	C	T	9.683e^-5	0.784	INTRON CG10625
3R	15742744	3R_15742744_SNP [dm3] 3R_19917022_SNP [dm6]	T	A	9.712e^-5	0.784	INTRON CG4465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21068186	3R_21068186_SNP [dm3] 3R_25242464_SNP [dm6]	T	C	9.734e^-5	0.784	DOWNSTREAM to & 1 other INTRON CG11854
2L	13574830	2L_13574830_SNP [dm3] 2L_13574830_SNP [dm6]	C	G	9.758e^-5	0.784	INTRON kuz
2R	20249643	2R_20249643_SNP [dm3] 2R_24362120_SNP [dm6]	G	T	9.796e^-5	0.784	INTRON bs & 1 other
2R	15674376	2R_15674376_SNP [dm3] 2R_19786871_SNP [dm6]	T	A	9.868e^-5	0.784	EXON CR45231	regulatory region REDfly_CRMs
3L	9340207	3L_9340207_SNP [dm3] 3L_9347107_SNP [dm6]	G	T	9.914e^-5	0.784	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	18118996	3R_18118996_SNP [dm3] 3R_22293274_SNP [dm6]	T	C	9.926e^-5	0.784	DOWNSTREAM mir-1010 INTRON SKIP
3R	23558985	3R_23558985_SNP [dm3] 3R_27733263_SNP [dm6]	C	G	9.969e^-5	0.784	INTERGENIC
2R	9658886	2R_9658886_INS [dm3] 2R_13771381_INS [dm6]	A	AA	1.002e^-4	0.784	INTRON Cpr50Ca
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	1.004e^-4	0.784	INTERGENIC
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	1.010e^-4	0.784	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
2R	10019244	2R_10019244_DEL [dm3] 2R_14131739_DEL [dm6]	GG	G	1.017e^-4	0.784	INTRON Prosap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12049436	2L_12049436_SNP [dm3] 2L_12049436_SNP [dm6]	A	C	1.022e^-4	0.784	UTR_5_PRIME CG14945 UPSTREAM CG14945 & 1 other	TF binding site mE1_TFBS_HSA
X	3190257	X_3190257_SNP [dm3] X_3296224_SNP [dm6]	A	T	1.024e^-4	0.784	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11035514	3L_11035514_SNP [dm3] 3L_11042414_SNP [dm6]	G	A	1.024e^-4	0.784	INTRON CG43693
2L	14108972	2L_14108972_SNP [dm3] 2L_14108972_SNP [dm6]	A	G	1.041e^-4	0.784	SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
3L	22526624	3L_22526624_SNP [dm3] 3L_22533524_SNP [dm6]	C	A	1.048e^-4	0.784	INTERGENIC	transposable element FlyBase
2R	19916071	2R_19916071_SNP [dm3] 2R_24028548_SNP [dm6]	A	T	1.054e^-4	0.784	UPSTREAM CG3163 INTRON HSPC300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20259259	2R_20259259_DEL [dm3] 2R_24371736_DEL [dm6]	TGGCCT	T	1.055e^-4	0.784	INTRON bs
2L	16974295	2L_16974295_SNP [dm3] 2L_16974295_SNP [dm6]	C	T	1.066e^-4	0.784	INTRON beat-IIIb
3R	23525926	3R_23525926_SNP [dm3] 3R_27700204_SNP [dm6]	A	T	1.077e^-4	0.784	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	979769	3L_979769_INS [dm3] 3L_979769_INS [dm6]	C	CCAC	1.088e^-4	0.784	SPLICE_SITE_ACCEPTOR Glut1 INTRON Glut1
3L	1660508	3L_1660508_SNP [dm3] 3L_1660508_SNP [dm6]	G	T	1.091e^-4	0.784	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9015172	2L_9015172_INS [dm3] 2L_9015172_INS [dm6]	G	GG	1.093e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12124996	3L_12124996_SNP [dm3] 3L_12131896_SNP [dm6]	A	C	1.097e^-4	0.784	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11033819	2L_11033819_SNP [dm3] 2L_11033819_SNP [dm6]	A	G	1.100e^-4	0.784	UPSTREAM CG18666 INTRON Samuel
X	3372892	X_3372892_SNP [dm3] X_3478859_SNP [dm6]	A	G	1.107e^-4	0.784	SYNONYMOUS_CODING CG10804 INTRON CR44999
X	17731479	X_17731479_SNP [dm3] X_17837446_SNP [dm6]	G	A	1.107e^-4	0.784	INTRON CG6398
2R	20216430	2R_20216430_DEL [dm3] 2R_24328907_DEL [dm6]	CGT	C	1.110e^-4	0.784	UPSTREAM CR44810 INTRON CR44810
2L	3378359	2L_3378359_SNP [dm3] 2L_3378359_SNP [dm6]	T	C	1.112e^-4	0.784	SYNONYMOUS_CODING Ptpa
3L	15300251	3L_15300251_SNP [dm3] 3L_15307151_SNP [dm6]	T	A	1.119e^-4	0.784	NON_SYNONYMOUS_CODING CG7255
2R	20213477	2R_20213477_SNP [dm3] 2R_24325954_SNP [dm6]	T	C	1.120e^-4	0.784	INTRON CR44810
3R	25102984	3R_25102984_SNP [dm3] 3R_29277262_SNP [dm6]	G	A	1.121e^-4	0.784	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
2R	9658889	2R_9658889_SNP [dm3] 2R_13771384_SNP [dm6]	C	T	1.126e^-4	0.784	INTRON Cpr50Ca
2L	13255271	2L_13255271_SNP [dm3] 2L_13255271_SNP [dm6]	A	C	1.133e^-4	0.784	INTRON CG31728
2L	5516404	2L_5516404_SNP [dm3] 2L_5516404_SNP [dm6]	G	A	1.139e^-4	0.784	INTERGENIC
2L	19927617	2L_19927617_SNP [dm3] 2L_19927617_SNP [dm6]	A	T	1.142e^-4	0.784	INTRON sick
2L	11033811	2L_11033811_SNP [dm3] 2L_11033811_SNP [dm6]	T	A	1.143e^-4	0.784	UPSTREAM CG18666 INTRON Samuel
3L	5528470	3L_5528470_SNP [dm3] 3L_5535370_SNP [dm6]	T	G	1.154e^-4	0.784	INTRON CG13285
3L	5528616	3L_5528616_SNP [dm3] 3L_5535516_SNP [dm6]	G	A	1.154e^-4	0.784	SYNONYMOUS_CODING CG13285
3R	25103021	3R_25103021_SNP [dm3] 3R_29277299_SNP [dm6]	T	C	1.159e^-4	0.784	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
3R	25103024	3R_25103024_SNP [dm3] 3R_29277302_SNP [dm6]	T	C	1.159e^-4	0.784	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
2R	15674369	2R_15674369_SNP [dm3] 2R_19786864_SNP [dm6]	A	C	1.165e^-4	0.784	EXON CR45231	regulatory region REDfly_CRMs
3R	25103026	3R_25103026_SNP [dm3] 3R_29277304_SNP [dm6]	T	C	1.165e^-4	0.784	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
2L	1120114	2L_1120114_SNP [dm3] 2L_1120114_SNP [dm6]	G	T	1.167e^-4	0.784	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20479714	X_20479714_SNP [dm3] X_20608687_SNP [dm6]	C	G	1.169e^-4	0.784	INTRON RunxA
2L	7930764	2L_7930764_SNP [dm3] 2L_7930764_SNP [dm6]	T	C	1.170e^-4	0.784	INTRON Snoo
2L	7999409	2L_7999409_SNP [dm3] 2L_7999409_SNP [dm6]	A	G	1.173e^-4	0.784	SYNONYMOUS_CODING Sirup DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22514593	3L_22514593_SNP [dm3] 3L_22521493_SNP [dm6]	G	C	1.198e^-4	0.784	INTERGENIC
2R	8631839	2R_8631839_SNP [dm3] 2R_12744334_SNP [dm6]	G	A	1.209e^-4	0.784	INTRON CG42663
X	3190506	X_3190506_DEL [dm3] X_3296473_DEL [dm6]	AA	A	1.211e^-4	0.784	INTRON dnc
X	3190520	X_3190520_SNP [dm3] X_3296487_SNP [dm6]	T	C	1.211e^-4	0.784	INTRON dnc
X	3191362	X_3191362_SNP [dm3] X_3297329_SNP [dm6]	G	A	1.211e^-4	0.784	INTRON dnc
2L	2563293	2L_2563293_SNP [dm3] 2L_2563293_SNP [dm6]	T	A	1.219e^-4	0.784	SYNONYMOUS_CODING Cyp309a1
2L	11604355	2L_11604355_SNP [dm3] 2L_11604355_SNP [dm6]	A	G	1.219e^-4	0.784	INTRON kek2
3L	21136719	3L_21136719_SNP [dm3] 3L_21143619_SNP [dm6]	T	C	1.221e^-4	0.784	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9624936	2L_9624936_SNP [dm3] 2L_9624936_SNP [dm6]	C	T	1.222e^-4	0.784	SYNONYMOUS_CODING CG31882
2L	11051460	2L_11051460_INS [dm3] 2L_11051460_INS [dm6]	A	AA	1.224e^-4	0.784	INTRON Samuel
X	21089903	X_21089903_SNP [dm3] X_21218876_SNP [dm6]	T	A	1.226e^-4	0.784	DOWNSTREAM CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
X	20517371	X_20517371_INS [dm3] X_20646344_INS [dm6]	C	CC	1.227e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	1837714	X_1837714_SNP [dm3] X_1943681_SNP [dm6]	A	C	1.231e^-4	0.784	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20652911	2L_20652911_SNP [dm3] 2L_20652911_SNP [dm6]	C	A	1.231e^-4	0.784	INTRON bru	TF binding site mE1_TFBS_HSA
2R	11792313	2R_11792313_SNP [dm3] 2R_15904808_SNP [dm6]	G	T	1.231e^-4	0.784	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3191308	X_3191308_SNP [dm3] X_3297275_SNP [dm6]	C	A	1.232e^-4	0.784	INTRON dnc
2R	15831958	2R_15831958_SNP [dm3] 2R_19944453_SNP [dm6]	G	C	1.235e^-4	0.784	DOWNSTREAM CG42690 INTRON CG43195
2L	20134030	2L_20134030_SNP [dm3] 2L_20134030_SNP [dm6]	G	C	1.239e^-4	0.784	NON_SYNONYMOUS_CODING CG10651
2L	17817269	2L_17817269_SNP [dm3] 2L_17817269_SNP [dm6]	A	G	1.243e^-4	0.784	INTRON CadN2
X	3190782	X_3190782_SNP [dm3] X_3296749_SNP [dm6]	C	T	1.246e^-4	0.784	INTRON dnc
X	7313116	X_7313116_SNP [dm3] X_7419083_SNP [dm6]	A	T	1.248e^-4	0.784	INTRON CG9657
3R	24741390	3R_24741390_INS [dm3] 3R_28915668_INS [dm6]	G	GG	1.251e^-4	0.784	INTRON Doa
2L	11642713	2L_11642713_SNP [dm3] 2L_11642713_SNP [dm6]	G	C	1.269e^-4	0.784	INTERGENIC
3R	23525903	3R_23525903_DEL [dm3] 3R_27700181_DEL [dm6]	TGAATTTTTGT...	T	1.284e^-4	0.784	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	3964788	2L_3964788_SNP [dm3] 2L_3964788_SNP [dm6]	A	G	1.286e^-4	0.784	INTRON fred
2L	10313808	2L_10313808_SNP [dm3] 2L_10313808_SNP [dm6]	A	C	1.290e^-4	0.784	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
3L	12125153	3L_12125153_SNP [dm3] 3L_12132053_SNP [dm6]	T	G	1.296e^-4	0.784	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5738767	2L_5738767_SNP [dm3] 2L_5738767_SNP [dm6]	G	T	1.299e^-4	0.784	INTRON CG11030 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9762024	3R_9762024_SNP [dm3] 3R_13936302_SNP [dm6]	T	C	1.302e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10313811	2L_10313811_SNP [dm3] 2L_10313811_SNP [dm6]	A	G	1.304e^-4	0.784	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
3R	25103012	3R_25103012_SNP [dm3] 3R_29277290_SNP [dm6]	T	C	1.305e^-4	0.784	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
3R	21697369	3R_21697369_DEL [dm3] 3R_25871647_DEL [dm6]	TT	T	1.307e^-4	0.784	UTR_3_PRIME CG5890
3R	26559166	3R_26559166_SNP [dm3] 3R_30733444_SNP [dm6]	C	T	1.308e^-4	0.784	INTERGENIC
X	8177317	X_8177317_SNP [dm3] X_8283284_SNP [dm6]	A	G	1.310e^-4	0.784	INTRON nAChRalpha3
2L	19931283	2L_19931283_SNP [dm3] 2L_19931283_SNP [dm6]	A	T	1.321e^-4	0.784	INTRON sick
X	3190566	X_3190566_SNP [dm3] X_3296533_SNP [dm6]	T	C	1.325e^-4	0.784	INTRON dnc
X	3190670	X_3190670_SNP [dm3] X_3296637_SNP [dm6]	T	A	1.325e^-4	0.784	INTRON dnc
X	3191182	X_3191182_SNP [dm3] X_3297149_SNP [dm6]	A	G	1.325e^-4	0.784	INTRON dnc
2R	20239862	2R_20239862_SNP [dm3] 2R_24352339_SNP [dm6]	T	C	1.329e^-4	0.784	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site mE1_TFBS_chinmo
3R	20038067	3R_20038067_SNP [dm3] 3R_24212345_SNP [dm6]	G	A	1.332e^-4	0.784	INTRON twin
2R	17434917	2R_17434917_INS [dm3] 2R_21547412_INS [dm6]	T	TC	1.335e^-4	0.784	UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13504179	2R_13504179_SNP [dm3] 2R_17616674_SNP [dm6]	G	A	1.343e^-4	0.784	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19962459	3L_19962459_SNP [dm3] 3L_19969359_SNP [dm6]	T	A	1.349e^-4	0.784	INTRON Ac76E
3L	22523852	3L_22523852_SNP [dm3] 3L_22530752_SNP [dm6]	G	T	1.349e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20261326	2R_20261326_SNP [dm3] 2R_24373803_SNP [dm6]	G	T	1.354e^-4	0.784	UPSTREAM tRNA:N5:60C INTRON bs
X	1822604	X_1822604_SNP [dm3] X_1928571_SNP [dm6]	C	T	1.354e^-4	0.784	SYNONYMOUS_CODING CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16334724	2R_16334724_SNP [dm3] 2R_20447219_SNP [dm6]	T	C	1.362e^-4	0.784	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	19708647	2R_19708647_SNP [dm3] 2R_23821124_SNP [dm6]	A	T	1.367e^-4	0.784	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	10313860	2L_10313860_SNP [dm3] 2L_10313860_SNP [dm6]	A	G	1.373e^-4	0.784	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
3L	12124625	3L_12124625_SNP [dm3] 3L_12131525_SNP [dm6]	C	T	1.377e^-4	0.784	UTR_3_PRIME Lsp2 UPSTREAM CG11534	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	10362640	3L_10362640_SNP [dm3] 3L_10369540_SNP [dm6]	C	T	1.378e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18462678	2L_18462678_SNP [dm3] 2L_18462678_SNP [dm6]	C	T	1.384e^-4	0.784	INTRON let-7-C	TF binding site mE1_TFBS_kn
2R	20257613	2R_20257613_SNP [dm3] 2R_24370090_SNP [dm6]	G	A	1.385e^-4	0.784	UPSTREAM CR44811 INTRON bs	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11119444	3L_11119444_SNP [dm3] 3L_11126344_SNP [dm6]	C	T	1.386e^-4	0.784	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10511898	3R_10511898_SNP [dm3] 3R_14686176_SNP [dm6]	T	C	1.394e^-4	0.784	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	455532	2L_455532_SNP [dm3] 2L_455532_SNP [dm6]	G	C	1.400e^-4	0.784	UTR_5_PRIME CG4133 DOWNSTREAM CG4164 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3190845	X_3190845_SNP [dm3] X_3296812_SNP [dm6]	A	T	1.403e^-4	0.784	INTRON dnc
3L	1408643	3L_1408643_SNP [dm3] 3L_1408643_SNP [dm6]	T	G	1.409e^-4	0.784	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	3929041	2L_3929041_SNP [dm3] 2L_3929041_SNP [dm6]	G	A	1.410e^-4	0.784	INTRON fred
2L	11041312	2L_11041312_INS [dm3] 2L_11041312_INS [dm6]	A	AGA	1.412e^-4	0.784	INTRON Samuel
X	3191284	X_3191284_SNP [dm3] X_3297251_SNP [dm6]	C	A	1.415e^-4	0.784	INTRON dnc
2L	1120133	2L_1120133_SNP [dm3] 2L_1120133_SNP [dm6]	T	A	1.419e^-4	0.784	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10313806	2L_10313806_SNP [dm3] 2L_10313806_SNP [dm6]	A	G	1.426e^-4	0.784	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
2R	20473608	2R_20473608_SNP [dm3] 2R_24586085_SNP [dm6]	C	T	1.431e^-4	0.784	INTRON pio
2R	20210826	2R_20210826_SNP [dm3] 2R_24323303_SNP [dm6]	G	A	1.431e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9624947	2L_9624947_SNP [dm3] 2L_9624947_SNP [dm6]	A	C	1.440e^-4	0.784	NON_SYNONYMOUS_CODING CG31882
2L	19811934	2L_19811934_INS [dm3] 2L_19811934_INS [dm6]	T	TT	1.441e^-4	0.784	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17760197	3L_17760197_SNP [dm3] 3L_17767097_SNP [dm6]	C	T	1.441e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20257701	2R_20257701_SNP [dm3] 2R_24370178_SNP [dm6]	C	T	1.446e^-4	0.784	UPSTREAM CR44811 INTRON bs	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20237552	2R_20237552_SNP [dm3] 2R_24350029_SNP [dm6]	A	G	1.456e^-4	0.784	UTR_3_PRIME bs DOWNSTREAM CG44812 INTRON bs
2L	6843476	2L_6843476_SNP [dm3] 2L_6843476_SNP [dm6]	A	T	1.461e^-4	0.784	INTERGENIC
3L	18130568	3L_18130568_SNP [dm3] 3L_18137468_SNP [dm6]	A	G	1.462e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10890437	3L_10890437_SNP [dm3] 3L_10897337_SNP [dm6]	A	C	1.463e^-4	0.784	INTRON Aps
3L	10890455	3L_10890455_SNP [dm3] 3L_10897355_SNP [dm6]	A	C	1.463e^-4	0.784	INTRON Aps
3L	1133519	3L_1133519_SNP [dm3] 3L_1133519_SNP [dm6]	C	T	1.469e^-4	0.784	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	1832293	X_1832293_SNP [dm3] X_1938260_SNP [dm6]	T	C	1.472e^-4	0.784	UTR_3_PRIME CG3857	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7037927	3L_7037927_SNP [dm3] 3L_7044827_SNP [dm6]	A	T	1.485e^-4	0.784	INTRON Mp
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	1.489e^-4	0.784	INTERGENIC
3R	9479147	3R_9479147_INS [dm3] 3R_13653425_INS [dm6]	A	AT	1.500e^-4	0.784	UTR_3_PRIME rin
3L	7952229	3L_7952229_DEL [dm3] 3L_7959129_DEL [dm6]	TT	T	1.502e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13768217	2L_13768217_INS [dm3] 2L_13768217_INS [dm6]	C	CAC	1.503e^-4	0.784	INTRON TM9SF4
3L	12122980	3L_12122980_SNP [dm3] 3L_12129880_SNP [dm6]	C	T	1.511e^-4	0.784	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17817980	2R_17817980_SNP [dm3] 2R_21930475_SNP [dm6]	C	T	1.517e^-4	0.784	INTRON Fili
X	13411625	X_13411625_SNP [dm3] X_13517592_SNP [dm6]	A	T	1.518e^-4	0.784	INTRON Neto	TF binding site BDTNP1_TFBS_dl
2L	10041243	2L_10041243_SNP [dm3] 2L_10041243_SNP [dm6]	G	C	1.524e^-4	0.784	INTERGENIC
2L	10313720	2L_10313720_SNP [dm3] 2L_10313720_SNP [dm6]	A	G	1.528e^-4	0.784	INTRON CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb
3L	10894323	3L_10894323_SNP [dm3] 3L_10901223_SNP [dm6]	G	A	1.530e^-4	0.784	INTERGENIC
2R	19916072	2R_19916072_SNP [dm3] 2R_24028549_SNP [dm6]	T	G	1.531e^-4	0.784	UPSTREAM CG3163 INTRON HSPC300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2563462	2L_2563462_SNP [dm3] 2L_2563462_SNP [dm6]	A	T	1.537e^-4	0.784	INTRON Cyp309a1
3L	14181390	3L_14181390_SNP [dm3] 3L_14188290_SNP [dm6]	A	C	1.539e^-4	0.784	INTRON nan
2L	3376058	2L_3376058_DEL [dm3] 2L_3376058_DEL [dm6]	ACA	A	1.540e^-4	0.784	UTR_3_PRIME CG9662 UPSTREAM CG15412 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10062501	2L_10062501_SNP [dm3] 2L_10062501_SNP [dm6]	A	G	1.547e^-4	0.784	INTRON Spn31A
3L	19962460	3L_19962460_SNP [dm3] 3L_19969360_SNP [dm6]	A	G	1.548e^-4	0.784	INTRON Ac76E
2L	20652899	2L_20652899_SNP [dm3] 2L_20652899_SNP [dm6]	T	G	1.549e^-4	0.784	INTRON bru	TF binding site mE1_TFBS_HSA
2L	14218578	2L_14218578_SNP [dm3] 2L_14218578_SNP [dm6]	T	C	1.554e^-4	0.784	INTRON Dyrk2
2L	10103182	2L_10103182_SNP [dm3] 2L_10103182_SNP [dm6]	A	T	1.556e^-4	0.784	INTRON CG44153 & 1 other
2L	11772197	2L_11772197_SNP [dm3] 2L_11772197_SNP [dm6]	A	C	1.562e^-4	0.785	INTERGENIC
2L	13981887	2L_13981887_SNP [dm3] 2L_13981887_SNP [dm6]	A	G	1.572e^-4	0.786	SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15257987	3R_15257987_SNP [dm3] 3R_19432265_SNP [dm6]	C	A	1.574e^-4	0.786	INTRON CG31221
2L	11061333	2L_11061333_SNP [dm3] 2L_11061333_SNP [dm6]	G	A	1.576e^-4	0.786	INTRON Samuel	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2655020	X_2655020_SNP [dm3] X_2760987_SNP [dm6]	C	T	1.584e^-4	0.786	INTRON kirre
2L	6174585	2L_6174585_SNP [dm3] 2L_6174585_SNP [dm6]	G	T	1.589e^-4	0.786	INTERGENIC
2L	9988035	2L_9988035_SNP [dm3] 2L_9988035_SNP [dm6]	G	T	1.592e^-4	0.786	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20237504	2R_20237504_SNP [dm3] 2R_24349981_SNP [dm6]	G	A	1.606e^-4	0.786	UTR_3_PRIME bs DOWNSTREAM CG44812 INTRON bs
3L	22499762	3L_22499762_SNP [dm3] 3L_22506662_SNP [dm6]	C	A	1.618e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7114793	2L_7114793_SNP [dm3] 2L_7114793_SNP [dm6]	C	G	1.619e^-4	0.786	INTRON Pvf3
2L	13255138	2L_13255138_SNP [dm3] 2L_13255138_SNP [dm6]	A	C	1.629e^-4	0.786	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3677793	3L_3677793_SNP [dm3] 3L_3677793_SNP [dm6]	G	A	1.632e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18273643	X_18273643_SNP [dm3] X_18379610_SNP [dm6]	G	C	1.634e^-4	0.786	NON_SYNONYMOUS_CODING por UPSTREAM CG6179	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20654363	2L_20654363_SNP [dm3] 2L_20654363_SNP [dm6]	G	A	1.636e^-4	0.786	SYNONYMOUS_CODING bru	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	3378237	2L_3378237_SNP [dm3] 2L_3378237_SNP [dm6]	C	T	1.639e^-4	0.786	SYNONYMOUS_CODING Ptpa
3L	11350373	3L_11350373_SNP [dm3] 3L_11357273_SNP [dm6]	C	T	1.643e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	20478750	2R_20478750_SNP [dm3] 2R_24591227_SNP [dm6]	C	T	1.650e^-4	0.786	INTRON pio	TF binding site BDTNP1_TFBS_prd
2L	9623113	2L_9623113_SNP [dm3] 2L_9623113_SNP [dm6]	G	T	1.653e^-4	0.786	DOWNSTREAM GlcAT-S INTERGENIC
3L	11711751	3L_11711751_SNP [dm3] 3L_11718651_SNP [dm6]	G	A	1.657e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	13504167	2R_13504167_SNP [dm3] 2R_17616662_SNP [dm6]	C	T	1.661e^-4	0.786	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9650634	3L_9650634_SNP [dm3] 3L_9657534_SNP [dm6]	T	A	1.680e^-4	0.786	INTRON fry & 1 other
3R	20103623	3R_20103623_SNP [dm3] 3R_24277901_SNP [dm6]	C	G	1.681e^-4	0.786	SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8471912	3R_8471912_SNP [dm3] 3R_12646190_SNP [dm6]	T	A	1.684e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	13037146	3L_13037146_INS [dm3] 3L_13044046_INS [dm6]	A	AAAATAGGTATGA...	1.688e^-4	0.786	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1996592	2L_1996592_SNP [dm3] 2L_1996592_SNP [dm6]	C	G	1.690e^-4	0.786	DOWNSTREAM CG33543 INTERGENIC
3L	1902083	3L_1902083_SNP [dm3] 3L_1902083_SNP [dm6]	C	T	1.695e^-4	0.786	UTR_3_PRIME CG1887 INTRON CG1887
X	8770978	X_8770978_SNP [dm3] X_8876945_SNP [dm6]	C	T	1.700e^-4	0.786	UPSTREAM Moe INTRON Moe
3L	14181412	3L_14181412_SNP [dm3] 3L_14188312_SNP [dm6]	T	G	1.709e^-4	0.786	INTRON nan
3R	18119025	3R_18119025_SNP [dm3] 3R_22293303_SNP [dm6]	A	T	1.717e^-4	0.786	DOWNSTREAM mir-1010 INTRON SKIP
2L	20642776	2L_20642776_SNP [dm3] 2L_20642776_SNP [dm6]	G	T	1.718e^-4	0.786	NON_SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
2L	10315379	2L_10315379_SNP [dm3] 2L_10315379_SNP [dm6]	G	A	1.721e^-4	0.786	SYNONYMOUS_CODING CG4972 UPSTREAM CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	9061993	2L_9061993_SNP [dm3] 2L_9061993_SNP [dm6]	T	C	1.746e^-4	0.786	INTRON CG31708	TF binding site BDTNP1_TFBS_twi
2R	20249629	2R_20249629_SNP [dm3] 2R_24362106_SNP [dm6]	T	A	1.747e^-4	0.786	INTRON bs & 1 other
2R	15674864	2R_15674864_INS [dm3] 2R_19787359_INS [dm6]	G	GGCTACACAATG...	1.755e^-4	0.786	EXON CR45231
3R	4092981	3R_4092981_SNP [dm3] 3R_8267259_SNP [dm6]	T	G	1.755e^-4	0.786	DOWNSTREAM CG9630 INTRON Mcm2	TF binding site mE1_TFBS_sens
3R	21537008	3R_21537008_INS [dm3] 3R_25711286_INS [dm6]	T	TT	1.759e^-4	0.786	INTRON LpR2
3L	22548401	3L_22548401_SNP [dm3] 3L_22555301_SNP [dm6]	G	A	1.764e^-4	0.786	INTERGENIC
2L	13429061	2L_13429061_SNP [dm3] 2L_13429061_SNP [dm6]	T	C	1.777e^-4	0.786	INTRON CG42784
2L	10294832	2L_10294832_SNP [dm3] 2L_10294832_SNP [dm6]	T	C	1.777e^-4	0.786	INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10313638	2L_10313638_SNP [dm3] 2L_10313638_SNP [dm6]	A	G	1.780e^-4	0.786	SYNONYMOUS_CODING CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb
3L	14582465	3L_14582465_SNP [dm3] 3L_14589365_SNP [dm6]	C	A	1.791e^-4	0.786	INTRON HGTX
3L	14582466	3L_14582466_SNP [dm3] 3L_14589366_SNP [dm6]	C	A	1.791e^-4	0.786	INTRON HGTX
X	1838379	X_1838379_SNP [dm3] X_1944346_SNP [dm6]	A	C	1.793e^-4	0.786	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19826237	3R_19826237_SNP [dm3] 3R_24000515_SNP [dm6]	A	G	1.793e^-4	0.786	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5889561	2L_5889561_SNP [dm3] 2L_5889561_SNP [dm6]	C	G	1.793e^-4	0.786	INTERGENIC
2L	2352932	2L_2352932_SNP [dm3] 2L_2352932_SNP [dm6]	T	G	1.795e^-4	0.786	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	465970	2L_465970_SNP [dm3] 2L_465970_SNP [dm6]	G	A	1.797e^-4	0.786	INTRON CG4297
3R	21568313	3R_21568313_SNP [dm3] 3R_25742591_SNP [dm6]	T	A	1.797e^-4	0.786	INTRON LpR1
3R	14801271	3R_14801271_SNP [dm3] 3R_18975549_SNP [dm6]	T	C	1.800e^-4	0.786	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG42613 & 1 other
X	7358545	X_7358545_SNP [dm3] X_7464512_SNP [dm6]	T	C	1.802e^-4	0.786	INTERGENIC
2L	11772763	2L_11772763_SNP [dm3] 2L_11772763_SNP [dm6]	C	T	1.809e^-4	0.786	INTERGENIC
2R	19267624	2R_19267624_SNP [dm3] 2R_23380101_SNP [dm6]	A	T	1.810e^-4	0.786	INTRON CG13551 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13427829	2L_13427829_SNP [dm3] 2L_13427829_SNP [dm6]	G	A	1.811e^-4	0.786	INTRON CG42784
X	941389	X_941389_SNP [dm3] X_1047356_SNP [dm6]	T	A	1.814e^-4	0.786	DOWNSTREAM CG42259 EXON CR44779
3L	19936056	3L_19936056_SNP [dm3] 3L_19942956_SNP [dm6]	C	T	1.825e^-4	0.786	INTRON Ac76E
2L	19871594	2L_19871594_DEL [dm3] 2L_19871594_DEL [dm6]	AGAGATTTGACGAAATCCAG...	A	1.838e^-4	0.786	INTRON sick	TF binding site mE1_TFBS_inv
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	1.840e^-4	0.786	INTERGENIC
2R	13504015	2R_13504015_SNP [dm3] 2R_17616510_SNP [dm6]	G	A	1.843e^-4	0.786	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl
3L	9553973	3L_9553973_SNP [dm3] 3L_9560873_SNP [dm6]	T	C	1.844e^-4	0.786	INTRON CG42673
2L	4233913	2L_4233913_SNP [dm3] 2L_4233913_SNP [dm6]	T	G	1.845e^-4	0.786	INTERGENIC
3L	17754980	3L_17754980_SNP [dm3] 3L_17761880_SNP [dm6]	G	A	1.847e^-4	0.786	INTRON Adgf-A & 2 others
2R	11080056	2R_11080056_SNP [dm3] 2R_15192551_SNP [dm6]	A	G	1.848e^-4	0.786	DOWNSTREAM Sfp51E INTERGENIC
2L	20649997	2L_20649997_SNP [dm3] 2L_20649997_SNP [dm6]	T	C	1.852e^-4	0.786	UTR_3_PRIME CG18810 UPSTREAM CG2611 DOWNSTREAM bru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13938229	2L_13938229_SNP [dm3] 2L_13938229_SNP [dm6]	C	T	1.854e^-4	0.786	INTRON Ance-3
3L	2158653	3L_2158653_SNP [dm3] 3L_2158653_SNP [dm6]	A	T	1.863e^-4	0.786	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo
2R	20327513	2R_20327513_SNP [dm3] 2R_24439990_SNP [dm6]	G	A	1.872e^-4	0.786	INTERGENIC
2L	21999634	2L_21999634_SNP [dm3] 2L_21999634_SNP [dm6]	A	C	1.875e^-4	0.786	DOWNSTREAM CR44916 INTERGENIC
3L	6820464	3L_6820464_SNP [dm3] 3L_6827364_SNP [dm6]	C	G	1.877e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5751017	2L_5751017_SNP [dm3] 2L_5751017_SNP [dm6]	C	G	1.877e^-4	0.786	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11891353	3L_11891353_SNP [dm3] 3L_11898253_SNP [dm6]	C	A	1.880e^-4	0.786	UPSTREAM CR43624 INTRON CG44837
3L	5401880	3L_5401880_SNP [dm3] 3L_5408780_SNP [dm6]	A	G	1.883e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25108317	3R_25108317_SNP [dm3] 3R_29282595_SNP [dm6]	C	T	1.893e^-4	0.786	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9770952	3R_9770952_SNP [dm3] 3R_13945230_SNP [dm6]	G	A	1.901e^-4	0.786	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13977382	2R_13977382_SNP [dm3] 2R_18089877_SNP [dm6]	C	A	1.902e^-4	0.786	INTRON CG34386
2L	4449719	2L_4449719_SNP [dm3] 2L_4449719_SNP [dm6]	C	T	1.911e^-4	0.786	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
2L	19880392	2L_19880392_SNP [dm3] 2L_19880392_SNP [dm6]	A	G	1.914e^-4	0.786	INTRON sick
2L	13135857	2L_13135857_SNP [dm3] 2L_13135857_SNP [dm6]	G	A	1.916e^-4	0.786	INTERGENIC
X	8514962	X_8514962_SNP [dm3] X_8620929_SNP [dm6]	A	C	1.919e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4332544	2L_4332544_SNP [dm3] 2L_4332544_SNP [dm6]	A	G	1.921e^-4	0.786	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8255578	2L_8255578_SNP [dm3] 2L_8255578_SNP [dm6]	A	T	1.923e^-4	0.786	INTRON CG8086
3L	22527084	3L_22527084_SNP [dm3] 3L_22533984_SNP [dm6]	G	A	1.925e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10313789	2L_10313789_DEL [dm3] 2L_10313789_DEL [dm6]	TATT	T	1.929e^-4	0.786	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
2L	4449812	2L_4449812_SNP [dm3] 2L_4449812_SNP [dm6]	A	C	1.931e^-4	0.786	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
3L	22534532	3L_22534532_SNP [dm3] 3L_22541432_SNP [dm6]	G	A	1.939e^-4	0.786	INTERGENIC
3L	14181401	3L_14181401_SNP [dm3] 3L_14188301_SNP [dm6]	A	C	1.948e^-4	0.786	INTRON nan
2L	8897498	2L_8897498_SNP [dm3] 2L_8897498_SNP [dm6]	C	G	1.950e^-4	0.786	INTERGENIC
3L	17754126	3L_17754126_SNP [dm3] 3L_17761026_SNP [dm6]	T	C	1.950e^-4	0.786	SPLICE_SITE_REGION CG32181 INTRON Adgf-A & 2 others
3R	21891975	3R_21891975_SNP [dm3] 3R_26066253_SNP [dm6]	T	G	1.956e^-4	0.786	INTERGENIC
2R	20389648	2R_20389648_SNP [dm3] 2R_24502125_SNP [dm6]	C	A	1.963e^-4	0.786	SYNONYMOUS_CODING Prosalpha4T2	TF binding site mE1_TFBS_chinmo
X	17342095	X_17342095_SNP [dm3] X_17448062_SNP [dm6]	G	C	1.973e^-4	0.786	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13255237	2L_13255237_DEL [dm3] 2L_13255237_DEL [dm6]	AA	T	1.975e^-4	0.786	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18133848	3R_18133848_SNP [dm3] 3R_22308126_SNP [dm6]	G	T	1.977e^-4	0.786	DOWNSTREAM CG34377 INTERGENIC
3R	18118994	3R_18118994_SNP [dm3] 3R_22293272_SNP [dm6]	T	C	1.979e^-4	0.786	DOWNSTREAM mir-1010 INTRON SKIP
3R	23374049	3R_23374049_SNP [dm3] 3R_27548327_SNP [dm6]	A	T	1.982e^-4	0.786	UTR_3_PRIME Klp98A DOWNSTREAM Gr98d	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	16291068	X_16291068_SNP [dm3] X_16397035_SNP [dm6]	G	T	1.987e^-4	0.786	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20652880	2L_20652880_SNP [dm3] 2L_20652880_SNP [dm6]	A	C	1.989e^-4	0.786	NON_SYNONYMOUS_CODING bru	TF binding site mE1_TFBS_HSA
2R	14822754	2R_14822754_INS [dm3] 2R_18935249_INS [dm6]	C	CACATTTTC	1.990e^-4	0.786	INTRON sano
3L	18187062	3L_18187062_INS [dm3] 3L_18193962_INS [dm6]	ACCA	TACTGGT	1.995e^-4	0.786	INTERGENIC
X	5534457	X_5534457_SNP [dm3] X_5640424_SNP [dm6]	A	C	1.997e^-4	0.786	INTRON CG42492
3L	8416600	3L_8416600_SNP [dm3] 3L_8423500_SNP [dm6]	C	T	1.997e^-4	0.786	INTERGENIC
2L	7753860	2L_7753860_SNP [dm3] 2L_7753860_SNP [dm6]	T	G	1.999e^-4	0.786	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	19205176	3L_19205176_SNP [dm3] 3L_19212076_SNP [dm6]	A	T	2.013e^-4	0.786	INTRON fz2
3R	13913797	3R_13913797_SNP [dm3] 3R_18088075_SNP [dm6]	T	C	2.015e^-4	0.786	INTERGENIC
2L	3377961	2L_3377961_SNP [dm3] 2L_3377961_SNP [dm6]	A	T	2.015e^-4	0.786	NON_SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
3L	13037081	3L_13037081_SNP [dm3] 3L_13043981_SNP [dm6]	C	A	2.019e^-4	0.786	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18720473	3L_18720473_SNP [dm3] 3L_18727373_SNP [dm6]	G	A	2.025e^-4	0.786	INTERGENIC
2R	5090295	2R_5090295_DEL [dm3] 2R_9202790_DEL [dm6]	CA	C	2.026e^-4	0.786	INTERGENIC
2L	10313835	2L_10313835_SNP [dm3] 2L_10313835_SNP [dm6]	C	T	2.027e^-4	0.786	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
2R	8431519	2R_8431519_SNP [dm3] 2R_12544014_SNP [dm6]	A	G	2.035e^-4	0.786	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18187054	3L_18187054_SNP [dm3] 3L_18193954_SNP [dm6]	C	T	2.042e^-4	0.786	INTERGENIC
2L	9268659	2L_9268659_SNP [dm3] 2L_9268659_SNP [dm6]	T	A	2.046e^-4	0.786	INTRON Ggamma30A
3R	15258111	3R_15258111_SNP [dm3] 3R_19432389_SNP [dm6]	A	G	2.049e^-4	0.786	INTRON CG31221
X	8937113	X_8937113_DEL [dm3] X_9043080_DEL [dm6]	TC	T	2.077e^-4	0.786	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21280883	X_21280883_SNP [dm3] X_21409856_SNP [dm6]	T	C	2.078e^-4	0.786	EXON CR45003
X	17071995	X_17071995_SNP [dm3] X_17177962_SNP [dm6]	T	A	2.078e^-4	0.786	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	21568410	3R_21568410_SNP [dm3] 3R_25742688_SNP [dm6]	A	G	2.080e^-4	0.786	INTRON LpR1
2R	18667319	2R_18667319_SNP [dm3] 2R_22779814_SNP [dm6]	C	T	2.081e^-4	0.786	INTRON CG42260
X	16290759	X_16290759_SNP [dm3] X_16396726_SNP [dm6]	C	A	2.083e^-4	0.786	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	15682219	3L_15682219_SNP [dm3] 3L_15689119_SNP [dm6]	C	T	2.086e^-4	0.786	SYNONYMOUS_CODING CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11484627	2R_11484627_SNP [dm3] 2R_15597122_SNP [dm6]	T	C	2.088e^-4	0.786	INTERGENIC
3R	26159051	3R_26159051_SNP [dm3] 3R_30333329_SNP [dm6]	G	C	2.092e^-4	0.786	INTRON hdc
2R	20219672	2R_20219672_SNP [dm3] 2R_24332149_SNP [dm6]	G	A	2.096e^-4	0.786	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad
2R	20219231	2R_20219231_SNP [dm3] 2R_24331708_SNP [dm6]	T	G	2.098e^-4	0.786	UTR_3_PRIME slbo
2L	9268416	2L_9268416_SNP [dm3] 2L_9268416_SNP [dm6]	A	G	2.102e^-4	0.786	INTRON Ggamma30A
2L	11640231	2L_11640231_SNP [dm3] 2L_11640231_SNP [dm6]	C	G	2.118e^-4	0.786	INTERGENIC
3L	6570290	3L_6570290_SNP [dm3] 3L_6577190_SNP [dm6]	G	A	2.124e^-4	0.786	INTRON CG18769 & 1 other
2R	13504189	2R_13504189_SNP [dm3] 2R_17616684_SNP [dm6]	C	A	2.129e^-4	0.786	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15674890	2R_15674890_SNP [dm3] 2R_19787385_SNP [dm6]	C	G	2.131e^-4	0.786	EXON CR45231
2L	10294814	2L_10294814_SNP [dm3] 2L_10294814_SNP [dm6]	G	A	2.135e^-4	0.786	INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13491266	2L_13491266_SNP [dm3] 2L_13491266_SNP [dm6]	A	G	2.144e^-4	0.786	INTRON CG42784
X	1832695	X_1832695_SNP [dm3] X_1938662_SNP [dm6]	G	A	2.146e^-4	0.786	SYNONYMOUS_CODING CG3857	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18366624	X_18366624_SNP [dm3] X_18472591_SNP [dm6]	C	T	2.151e^-4	0.786	INTRON CG32547
2R	15910629	2R_15910629_SNP [dm3] 2R_20023124_SNP [dm6]	A	G	2.163e^-4	0.786	INTERGENIC
2R	13504085	2R_13504085_SNP [dm3] 2R_17616580_SNP [dm6]	A	G	2.163e^-4	0.786	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22533189	3L_22533189_SNP [dm3] 3L_22540089_SNP [dm6]	T	A	2.168e^-4	0.786	INTERGENIC
X	21453953	X_21453953_SNP [dm3] X_21582926_SNP [dm6]	G	T	2.174e^-4	0.786	UPSTREAM CR44711 INTERGENIC
3R	5020876	3R_5020876_SNP [dm3] 3R_9195154_SNP [dm6]	C	T	2.182e^-4	0.786	INTRON pum
2L	3814421	2L_3814421_DEL [dm3] 2L_3814421_DEL [dm6]	TT	T	2.189e^-4	0.786	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	13308185	2L_13308185_SNP [dm3] 2L_13308185_SNP [dm6]	C	T	2.191e^-4	0.786	SYNONYMOUS_CODING CG43778 DOWNSTREAM CG16825	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	19784405	2L_19784405_DEL [dm3] 2L_19784405_DEL [dm6]	AGCTA	A	2.191e^-4	0.786	INTRON CdGAPr
2R	9352367	2R_9352367_SNP [dm3] 2R_13464862_SNP [dm6]	A	T	2.210e^-4	0.786	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16156498	X_16156498_DEL [dm3] X_16262465_DEL [dm6]	AA	A	2.212e^-4	0.786	INTERGENIC
3L	14581428	3L_14581428_SNP [dm3] 3L_14588328_SNP [dm6]	C	T	2.215e^-4	0.786	INTRON HGTX
2R	14423903	2R_14423903_SNP [dm3] 2R_18536398_SNP [dm6]	C	T	2.216e^-4	0.786	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20219749	2R_20219749_DEL [dm3] 2R_24332226_DEL [dm6]	GGAG	G	2.224e^-4	0.786	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18030806	3L_18030806_SNP [dm3] 3L_18037706_SNP [dm6]	T	G	2.224e^-4	0.786	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9056749	3L_9056749_SNP [dm3] 3L_9063649_SNP [dm6]	A	G	2.224e^-4	0.786	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	12125156	3L_12125156_SNP [dm3] 3L_12132056_SNP [dm6]	C	A	2.225e^-4	0.786	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9624926	2L_9624926_SNP [dm3] 2L_9624926_SNP [dm6]	C	G	2.228e^-4	0.786	NON_SYNONYMOUS_CODING CG31882
2R	10839315	2R_10839315_SNP [dm3] 2R_14951810_SNP [dm6]	G	A	2.228e^-4	0.786	SYNONYMOUS_CODING aPKC UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14843718	2L_14843718_SNP [dm3] 2L_14843718_SNP [dm6]	G	A	2.235e^-4	0.786	DOWNSTREAM CG42682 INTERGENIC
3R	18118968	3R_18118968_SNP [dm3] 3R_22293246_SNP [dm6]	C	A	2.244e^-4	0.786	DOWNSTREAM mir-1010 INTRON SKIP
3L	22499014	3L_22499014_SNP [dm3] 3L_22505914_SNP [dm6]	A	G	2.247e^-4	0.786	UPSTREAM CG43329 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21090028	X_21090028_SNP [dm3] X_21219001_SNP [dm6]	G	T	2.247e^-4	0.786	DOWNSTREAM CG32523 INTRON CG32521
2L	7515637	2L_7515637_SNP [dm3] 2L_7515637_SNP [dm6]	G	A	2.252e^-4	0.786	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
X	4487243	X_4487243_SNP [dm3] X_4593210_SNP [dm6]	T	G	2.257e^-4	0.786	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	19889837	3R_19889837_SNP [dm3] 3R_24064115_SNP [dm6]	C	A	2.264e^-4	0.786	DOWNSTREAM 4EHP INTRON 4EHP
3R	24741374	3R_24741374_SNP [dm3] 3R_28915652_SNP [dm6]	A	G	2.270e^-4	0.786	INTRON Doa
2R	20211179	2R_20211179_SNP [dm3] 2R_24323656_SNP [dm6]	T	A	2.272e^-4	0.786	INTERGENIC
2L	20245166	2L_20245166_SNP [dm3] 2L_20245166_SNP [dm6]	G	T	2.273e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14938094	3L_14938094_SNP [dm3] 3L_14944994_SNP [dm6]	C	G	2.276e^-4	0.786	UPSTREAM CG13465 DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7515645	2L_7515645_SNP [dm3] 2L_7515645_SNP [dm6]	G	T	2.278e^-4	0.786	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
3L	17755083	3L_17755083_SNP [dm3] 3L_17761983_SNP [dm6]	A	C	2.284e^-4	0.786	INTRON Adgf-A & 2 others
2L	14402505	2L_14402505_SNP [dm3] 2L_14402505_SNP [dm6]	C	G	2.288e^-4	0.786	INTRON elB
3L	12668373	3L_12668373_SNP [dm3] 3L_12675273_SNP [dm6]	T	A	2.297e^-4	0.786	INTERGENIC
2L	19927523	2L_19927523_SNP [dm3] 2L_19927523_SNP [dm6]	C	T	2.299e^-4	0.786	INTRON sick
2L	7753796	2L_7753796_SNP [dm3] 2L_7753796_SNP [dm6]	T	A	2.302e^-4	0.786	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	20029875	2L_20029875_SNP [dm3] 2L_20029875_SNP [dm6]	A	T	2.307e^-4	0.786	INTRON sNPF
X	8177292	X_8177292_SNP [dm3] X_8283259_SNP [dm6]	C	A	2.307e^-4	0.786	INTRON nAChRalpha3
X	4487288	X_4487288_SNP [dm3] X_4593255_SNP [dm6]	A	T	2.311e^-4	0.786	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	20253662	2R_20253662_SNP [dm3] 2R_24366139_SNP [dm6]	A	C	2.333e^-4	0.786	INTRON bs & 1 other
X	21453977	X_21453977_SNP [dm3] X_21582950_SNP [dm6]	A	T	2.333e^-4	0.786	UPSTREAM CR44711 INTERGENIC
3R	7115019	3R_7115019_SNP [dm3] 3R_11289297_SNP [dm6]	T	C	2.334e^-4	0.786	INTRON CR31386
2L	8255579	2L_8255579_SNP [dm3] 2L_8255579_SNP [dm6]	A	G	2.340e^-4	0.786	INTRON CG8086
3R	23526041	3R_23526041_SNP [dm3] 3R_27700319_SNP [dm6]	G	A	2.340e^-4	0.786	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	7753869	2L_7753869_SNP [dm3] 2L_7753869_SNP [dm6]	G	A	2.340e^-4	0.786	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	5352242	X_5352242_SNP [dm3] X_5458209_SNP [dm6]	G	A	2.341e^-4	0.786	INTRON SPR	TF binding site mE1_TFBS_chinmo
2R	20260408	2R_20260408_SNP [dm3] 2R_24372885_SNP [dm6]	A	T	2.343e^-4	0.786	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3677712	3L_3677712_SNP [dm3] 3L_3677712_SNP [dm6]	T	C	2.344e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13311087	3L_13311087_SNP [dm3] 3L_13317987_SNP [dm6]	A	G	2.346e^-4	0.786	INTERGENIC
3L	11123513	3L_11123513_SNP [dm3] 3L_11130413_SNP [dm6]	A	G	2.363e^-4	0.786	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad
3L	12718311	3L_12718311_SNP [dm3] 3L_12725211_SNP [dm6]	A	G	2.363e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20223623	2R_20223623_SNP [dm3] 2R_24336100_SNP [dm6]	G	C	2.368e^-4	0.786	UPSTREAM CR44282 INTERGENIC
3L	789185	3L_789185_SNP [dm3] 3L_789185_SNP [dm6]	G	A	2.373e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	22539530	3L_22539530_SNP [dm3] 3L_22546430_SNP [dm6]	G	A	2.374e^-4	0.786	INTERGENIC
2L	4449874	2L_4449874_SNP [dm3] 2L_4449874_SNP [dm6]	A	G	2.375e^-4	0.786	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
2R	20240926	2R_20240926_SNP [dm3] 2R_24353403_SNP [dm6]	A	C	2.376e^-4	0.786	INTRON bs & 1 other
2L	2563215	2L_2563215_SNP [dm3] 2L_2563215_SNP [dm6]	A	T	2.378e^-4	0.786	NON_SYNONYMOUS_CODING Cyp309a1
3L	19205132	3L_19205132_SNP [dm3] 3L_19212032_SNP [dm6]	C	T	2.384e^-4	0.786	INTRON fz2
X	3522937	X_3522937_SNP [dm3] X_3628904_SNP [dm6]	G	T	2.385e^-4	0.786	INTRON AstA-R1
3R	14455053	3R_14455053_SNP [dm3] 3R_18629331_SNP [dm6]	A	G	2.385e^-4	0.786	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
3L	8641581	3L_8641581_SNP [dm3] 3L_8648481_SNP [dm6]	G	A	2.387e^-4	0.786	SYNONYMOUS_CODING Arr2 UPSTREAM Pex7 INTRON Pex7	TF binding site mE1_TFBS_chinmo
3L	789132	3L_789132_SNP [dm3] 3L_789132_SNP [dm6]	C	T	2.388e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	22556620	3L_22556620_SNP [dm3] 3L_22563520_SNP [dm6]	G	C	2.388e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2388059	2L_2388059_SNP [dm3] 2L_2388059_SNP [dm6]	G	A	2.389e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1059538	3L_1059538_SNP [dm3] 3L_1059538_SNP [dm6]	C	T	2.390e^-4	0.786	INTRON bab1
X	5348355	X_5348355_INS [dm3] X_5454322_INS [dm6]	C	CC	2.402e^-4	0.786	INTRON SPR
3R	21068194	3R_21068194_SNP [dm3] 3R_25242472_SNP [dm6]	G	T	2.406e^-4	0.786	DOWNSTREAM to & 1 other INTRON CG11854
2L	7751138	2L_7751138_SNP [dm3] 2L_7751138_SNP [dm6]	A	C	2.416e^-4	0.786	INTERGENIC
X	19245777	X_19245777_SNP [dm3] X_19351744_SNP [dm6]	C	T	2.423e^-4	0.786	INTERGENIC
3R	15258006	3R_15258006_SNP [dm3] 3R_19432284_SNP [dm6]	A	T	2.431e^-4	0.786	INTRON CG31221
3R	24995865	3R_24995865_SNP [dm3] 3R_29170143_SNP [dm6]	G	A	2.436e^-4	0.786	SYNONYMOUS_CODING CG11898
2L	3376254	2L_3376254_SNP [dm3] 2L_3376254_SNP [dm6]	A	G	2.441e^-4	0.786	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	6841599	2L_6841599_SNP [dm3] 2L_6841599_SNP [dm6]	C	T	2.443e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20656688	2L_20656688_SNP [dm3] 2L_20656688_SNP [dm6]	A	T	2.444e^-4	0.786	UPSTREAM bru INTRON CG2614	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21648905	3R_21648905_DEL [dm3] 3R_25823183_DEL [dm6]	AA	A	2.452e^-4	0.786	DOWNSTREAM CR44949 INTERGENIC
3R	15742063	3R_15742063_SNP [dm3] 3R_19916341_SNP [dm6]	C	T	2.458e^-4	0.786	SYNONYMOUS_CODING CG4465 UPSTREAM Xport & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19927646	2L_19927646_SNP [dm3] 2L_19927646_SNP [dm6]	C	T	2.470e^-4	0.786	INTRON sick
X	2655324	X_2655324_SNP [dm3] X_2761291_SNP [dm6]	T	C	2.472e^-4	0.786	INTRON kirre
X	4487246	X_4487246_SNP [dm3] X_4593213_SNP [dm6]	A	C	2.473e^-4	0.786	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	13937462	2L_13937462_SNP [dm3] 2L_13937462_SNP [dm6]	A	G	2.474e^-4	0.786	INTRON Ance-3
2L	6841607	2L_6841607_SNP [dm3] 2L_6841607_SNP [dm6]	T	G	2.484e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1682202	3L_1682202_SNP [dm3] 3L_1682202_SNP [dm6]	T	C	2.486e^-4	0.786	INTRON CG7991
3L	22542882	3L_22542882_SNP [dm3] 3L_22549782_SNP [dm6]	C	G	2.491e^-4	0.786	UPSTREAM Trxr-2 DOWNSTREAM CG11404 INTERGENIC
2L	9625587	2L_9625587_SNP [dm3] 2L_9625587_SNP [dm6]	G	C	2.495e^-4	0.786	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22064651	3R_22064651_SNP [dm3] 3R_26238929_SNP [dm6]	A	G	2.498e^-4	0.786	INTRON CR42745
2L	2383496	2L_2383496_SNP [dm3] 2L_2383496_SNP [dm6]	C	T	2.498e^-4	0.786	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt
3L	18165011	3L_18165011_SNP [dm3] 3L_18171911_SNP [dm6]	T	G	2.498e^-4	0.786	INTRON W
X	17068459	X_17068459_SNP [dm3] X_17174426_SNP [dm6]	T	A	2.508e^-4	0.786	INTRON baz	TF binding site mE1_TFBS_inv
3L	12125161	3L_12125161_SNP [dm3] 3L_12132061_SNP [dm6]	A	T	2.511e^-4	0.786	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	2021846	2R_2021846_SNP [dm3] 2R_6134341_SNP [dm6]	G	C	2.512e^-4	0.786	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13037076	3L_13037076_SNP [dm3] 3L_13043976_SNP [dm6]	G	T	2.515e^-4	0.786	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20892853	3L_20892853_SNP [dm3] 3L_20899753_SNP [dm6]	C	A	2.515e^-4	0.786	INTERGENIC
2L	20652939	2L_20652939_SNP [dm3] 2L_20652939_SNP [dm6]	T	G	2.516e^-4	0.786	SPLICE_SITE_REGION bru INTRON bru	TF binding site mE1_TFBS_HSA
2L	2671917	2L_2671917_SNP [dm3] 2L_2671917_SNP [dm6]	T	G	2.523e^-4	0.786	NON_SYNONYMOUS_CODING Gr23a
3R	21568047	3R_21568047_SNP [dm3] 3R_25742325_SNP [dm6]	C	A	2.526e^-4	0.786	INTRON LpR1
2R	15674818	2R_15674818_SNP [dm3] 2R_19787313_SNP [dm6]	T	C	2.527e^-4	0.786	EXON CR45231
X	9001046	X_9001046_SNP [dm3] X_9107013_SNP [dm6]	A	T	2.529e^-4	0.786	UPSTREAM Arfrp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12205899	X_12205899_SNP [dm3] X_12311866_SNP [dm6]	T	C	2.531e^-4	0.786	INTRON Ten-a
3R	15257962	3R_15257962_SNP [dm3] 3R_19432240_SNP [dm6]	G	T	2.541e^-4	0.786	INTRON CG31221
3L	9745899	3L_9745899_SNP [dm3] 3L_9752799_SNP [dm6]	C	A	2.542e^-4	0.786	INTRON CG42268
2R	20216765	2R_20216765_SNP [dm3] 2R_24329242_SNP [dm6]	C	T	2.543e^-4	0.786	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3L	6835371	3L_6835371_SNP [dm3] 3L_6842271_SNP [dm6]	C	T	2.544e^-4	0.786	INTERGENIC
2L	7292016	2L_7292016_SNP [dm3] 2L_7292016_SNP [dm6]	C	G	2.546e^-4	0.786	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6359941	2R_6359941_SNP [dm3] 2R_10472436_SNP [dm6]	T	G	2.549e^-4	0.786	INTRON whd	TF binding site mE1_TFBS_inv
3L	1746598	3L_1746598_SNP [dm3] 3L_1746598_SNP [dm6]	C	T	2.553e^-4	0.786	UPSTREAM CG13921 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	2352911	2L_2352911_SNP [dm3] 2L_2352911_SNP [dm6]	A	G	2.564e^-4	0.786	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	20491111	3R_20491111_SNP [dm3] 3R_24665389_SNP [dm6]	G	A	2.566e^-4	0.786	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
3L	14512951	3L_14512951_SNP [dm3] 3L_14519851_SNP [dm6]	G	A	2.566e^-4	0.786	UTR_3_PRIME CG4613 INTRON bbg
3R	18118837	3R_18118837_SNP [dm3] 3R_22293115_SNP [dm6]	G	T	2.571e^-4	0.786	DOWNSTREAM mir-1010 INTRON SKIP
2R	12554231	2R_12554231_SNP [dm3] 2R_16666726_SNP [dm6]	G	A	2.574e^-4	0.786	INTRON Picot
2L	13255201	2L_13255201_SNP [dm3] 2L_13255201_SNP [dm6]	A	G	2.574e^-4	0.786	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18118848	3R_18118848_SNP [dm3] 3R_22293126_SNP [dm6]	T	C	2.579e^-4	0.786	DOWNSTREAM mir-1010 INTRON SKIP
3L	16926249	3L_16926249_SNP [dm3] 3L_16933149_SNP [dm6]	C	T	2.588e^-4	0.786	INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	15742003	3R_15742003_SNP [dm3] 3R_19916281_SNP [dm6]	C	T	2.591e^-4	0.786	SYNONYMOUS_CODING CG4465 UPSTREAM Xport & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2189854	2L_2189854_SNP [dm3] 2L_2189854_SNP [dm6]	C	A	2.591e^-4	0.786	UPSTREAM CR44065 & 1 other DOWNSTREAM CG10874 INTERGENIC
2L	5524682	2L_5524682_SNP [dm3] 2L_5524682_SNP [dm6]	C	T	2.602e^-4	0.787	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2717197	3L_2717197_SNP [dm3] 3L_2717197_SNP [dm6]	C	A	2.602e^-4	0.787	DOWNSTREAM Mrtf INTERGENIC
3L	14581406	3L_14581406_SNP [dm3] 3L_14588306_SNP [dm6]	G	C	2.606e^-4	0.787	INTRON HGTX
2L	14108969	2L_14108969_SNP [dm3] 2L_14108969_SNP [dm6]	C	T	2.619e^-4	0.789	NON_SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
3L	3393818	3L_3393818_SNP [dm3] 3L_3393818_SNP [dm6]	G	A	2.621e^-4	0.789	UPSTREAM CR45737 INTERGENIC
3L	13363701	3L_13363701_SNP [dm3] 3L_13370601_SNP [dm6]	T	C	2.630e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7753855	2L_7753855_SNP [dm3] 2L_7753855_SNP [dm6]	G	A	2.642e^-4	0.789	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	13255179	2L_13255179_SNP [dm3] 2L_13255179_SNP [dm6]	A	C	2.645e^-4	0.789	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3887728	3L_3887728_SNP [dm3] 3L_3887728_SNP [dm6]	T	C	2.646e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16736348	2R_16736348_SNP [dm3] 2R_20848843_SNP [dm6]	G	A	2.650e^-4	0.789	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2R	12857607	2R_12857607_SNP [dm3] 2R_16970102_SNP [dm6]	C	T	2.652e^-4	0.789	EXON CR44377
2L	21999661	2L_21999661_SNP [dm3] 2L_21999661_SNP [dm6]	G	A	2.653e^-4	0.789	DOWNSTREAM CR44916 INTERGENIC
3L	12126432	3L_12126432_SNP [dm3] 3L_12133332_SNP [dm6]	A	G	2.659e^-4	0.789	NON_SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14936063	3L_14936063_SNP [dm3] 3L_14942963_SNP [dm6]	C	G	2.665e^-4	0.789	DOWNSTREAM DCX-EMAP & 1 other INTERGENIC
3L	21256059	3L_21256059_SNP [dm3] 3L_21262959_SNP [dm6]	A	T	2.668e^-4	0.789	INTRON Eip78C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13037095	3L_13037095_SNP [dm3] 3L_13043995_SNP [dm6]	A	T	2.670e^-4	0.789	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22621716	3R_22621716_SNP [dm3] 3R_26795994_SNP [dm6]	C	G	2.672e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26568800	3R_26568800_SNP [dm3] 3R_30743078_SNP [dm6]	G	A	2.688e^-4	0.792	SYNONYMOUS_CODING CG15543
3R	21851062	3R_21851062_SNP [dm3] 3R_26025340_SNP [dm6]	A	G	2.698e^-4	0.792	UPSTREAM E_spl_m4-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	20658076	2L_20658076_SNP [dm3] 2L_20658076_SNP [dm6]	G	A	2.699e^-4	0.792	SYNONYMOUS_CODING CG2614
2L	20648821	2L_20648821_SNP [dm3] 2L_20648821_SNP [dm6]	A	G	2.701e^-4	0.792	UPSTREAM CG18810 DOWNSTREAM snoRNA:Me28S-C2645a & 2 others EXON Uhg3
2R	4309406	2R_4309406_SNP [dm3] 2R_8421901_SNP [dm6]	G	C	2.706e^-4	0.792	INTRON CSN7	TF binding site mE1_TFBS_sens
2L	13987516	2L_13987516_SNP [dm3] 2L_13987516_SNP [dm6]	T	G	2.707e^-4	0.792	INTRON rk
2L	12054239	2L_12054239_SNP [dm3] 2L_12054239_SNP [dm6]	C	T	2.716e^-4	0.792	INTRON JhI-21
3R	4371802	3R_4371802_SNP [dm3] 3R_8546080_SNP [dm6]	C	A	2.720e^-4	0.792	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
2L	10151400	2L_10151400_SNP [dm3] 2L_10151400_SNP [dm6]	G	A	2.728e^-4	0.792	SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	8631898	2R_8631898_DEL [dm3] 2R_12744393_DEL [dm6]	AT	A	2.734e^-4	0.792	INTRON CG42663
3L	22528056	3L_22528056_SNP [dm3] 3L_22534956_SNP [dm6]	G	A	2.739e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8429314	2R_8429314_SNP [dm3] 2R_12541809_SNP [dm6]	C	T	2.741e^-4	0.792	INTRON fra
3L	18714300	3L_18714300_SNP [dm3] 3L_18721200_SNP [dm6]	G	A	2.743e^-4	0.792	DOWNSTREAM CG12477 INTERGENIC
3L	3765386	3L_3765386_SNP [dm3] 3L_3765386_SNP [dm6]	C	T	2.744e^-4	0.792	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9000105	X_9000105_SNP [dm3] X_9106072_SNP [dm6]	G	A	2.749e^-4	0.792	UPSTREAM Arfrp1 INTRON Bx42	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	22522695	3L_22522695_SNP [dm3] 3L_22529595_SNP [dm6]	C	G	2.750e^-4	0.792	INTERGENIC
3R	17105686	3R_17105686_SNP [dm3] 3R_21279964_SNP [dm6]	T	A	2.765e^-4	0.792	SPLICE_SITE_REGION SIFaR INTRON SIFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13059380	3R_13059380_SNP [dm3] 3R_17233658_SNP [dm6]	T	C	2.768e^-4	0.792	INTRON beat-IIb
2L	13575202	2L_13575202_SNP [dm3] 2L_13575202_SNP [dm6]	A	T	2.769e^-4	0.792	INTRON kuz
2R	8443011	2R_8443011_SNP [dm3] 2R_12555506_SNP [dm6]	A	G	2.773e^-4	0.792	INTRON fra
3L	12437125	3L_12437125_SNP [dm3] 3L_12444025_SNP [dm6]	G	A	2.777e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	12210560	3L_12210560_SNP [dm3] 3L_12217460_SNP [dm6]	T	C	2.780e^-4	0.792	INTRON app
3L	13047126	3L_13047126_SNP [dm3] 3L_13054026_SNP [dm6]	A	T	2.782e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20260586	2R_20260586_SNP [dm3] 2R_24373063_SNP [dm6]	C	T	2.784e^-4	0.792	UPSTREAM tRNA:N5:60C INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8498736	2L_8498736_DEL [dm3] 2L_8498736_DEL [dm6]	GCC	G	2.792e^-4	0.793	INTRON Dh31
X	16535728	X_16535728_SNP [dm3] X_16641695_SNP [dm6]	C	A	2.801e^-4	0.795	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	9718666	2L_9718666_SNP [dm3] 2L_9718666_SNP [dm6]	C	A	2.807e^-4	0.795	INTRON Nckx30C
X	19729648	X_19729648_SNP [dm3] X_19835615_SNP [dm6]	T	C	2.815e^-4	0.796	INTRON pico	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	3191192	X_3191192_SNP [dm3] X_3297159_SNP [dm6]	G	A	2.823e^-4	0.797	INTRON dnc
2L	4028101	2L_4028101_SNP [dm3] 2L_4028101_SNP [dm6]	A	G	2.827e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9435718	3L_9435718_SNP [dm3] 3L_9442618_SNP [dm6]	A	T	2.832e^-4	0.797	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17755013	3L_17755013_SNP [dm3] 3L_17761913_SNP [dm6]	G	A	2.836e^-4	0.797	SYNONYMOUS_CODING CG32181 INTRON Adgf-A & 1 other
X	13314029	X_13314029_SNP [dm3] X_13419996_SNP [dm6]	A	G	2.844e^-4	0.797	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13297507	3L_13297507_SNP [dm3] 3L_13304407_SNP [dm6]	C	T	2.851e^-4	0.797	DOWNSTREAM CR44555 INTERGENIC
3L	11035240	3L_11035240_SNP [dm3] 3L_11042140_SNP [dm6]	A	C	2.869e^-4	0.797	INTRON CG43693	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	20491106	3R_20491106_SNP [dm3] 3R_24665384_SNP [dm6]	C	T	2.870e^-4	0.797	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
X	12501556	X_12501556_SNP [dm3] X_12607523_SNP [dm6]	G	A	2.886e^-4	0.797	UTR_3_PRIME Sec16 INTRON Sec16
X	18366569	X_18366569_INS [dm3] X_18472536_INS [dm6]	T	TT	2.888e^-4	0.797	INTRON CG32547
2R	14699384	2R_14699384_SNP [dm3] 2R_18811879_SNP [dm6]	T	G	2.888e^-4	0.797	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14426215	2L_14426215_SNP [dm3] 2L_14426215_SNP [dm6]	C	G	2.892e^-4	0.797	INTERGENIC
3R	26714247	3R_26714247_SNP [dm3] 3R_30888525_SNP [dm6]	C	T	2.892e^-4	0.797	INTRON Sap-r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11041320	2L_11041320_SNP [dm3] 2L_11041320_SNP [dm6]	T	C	2.900e^-4	0.797	INTRON Samuel
2L	9268435	2L_9268435_SNP [dm3] 2L_9268435_SNP [dm6]	T	A	2.904e^-4	0.797	INTRON Ggamma30A
3L	1218180	3L_1218180_SNP [dm3] 3L_1218180_SNP [dm6]	A	C	2.906e^-4	0.797	UTR_3_PRIME LysP INTRON mwh
3L	11037609	3L_11037609_SNP [dm3] 3L_11044509_SNP [dm6]	A	G	2.908e^-4	0.797	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	2077628	2L_2077628_SNP [dm3] 2L_2077628_SNP [dm6]	G	A	2.909e^-4	0.797	INTRON dpr3
2L	15186791	2L_15186791_SNP [dm3] 2L_15186791_SNP [dm6]	G	A	2.924e^-4	0.797	INTRON CG4168
3R	20192380	3R_20192380_SNP [dm3] 3R_24366658_SNP [dm6]	G	T	2.927e^-4	0.797	NON_SYNONYMOUS_CODING CG42811 DOWNSTREAM CG13613 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	2.928e^-4	0.797	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9553979	3L_9553979_SNP [dm3] 3L_9560879_SNP [dm6]	A	C	2.928e^-4	0.797	INTRON CG42673
2R	20258860	2R_20258860_SNP [dm3] 2R_24371337_SNP [dm6]	G	A	2.930e^-4	0.797	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1238411	2L_1238411_SNP [dm3] 2L_1238411_SNP [dm6]	C	A	2.930e^-4	0.797	INTERGENIC
X	3157201	X_3157201_SNP [dm3] X_3263168_SNP [dm6]	G	T	2.931e^-4	0.797	INTRON dnc
3L	17910845	3L_17910845_SNP [dm3] 3L_17917745_SNP [dm6]	C	T	2.933e^-4	0.797	INTERGENIC
3R	25522883	3R_25522883_SNP [dm3] 3R_29697161_SNP [dm6]	T	C	2.933e^-4	0.797	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11753395	3L_11753395_SNP [dm3] 3L_11760295_SNP [dm6]	A	G	2.954e^-4	0.798	INTRON CG6024
2L	11646529	2L_11646529_SNP [dm3] 2L_11646529_SNP [dm6]	C	T	2.955e^-4	0.798	INTRON CG6614
3L	6489419	3L_6489419_SNP [dm3] 3L_6496319_SNP [dm6]	T	C	2.956e^-4	0.798	UTR_5_PRIME sfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13255225	2L_13255225_SNP [dm3] 2L_13255225_SNP [dm6]	T	C	2.957e^-4	0.798	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8450625	3L_8450625_SNP [dm3] 3L_8457525_SNP [dm6]	A	G	2.963e^-4	0.798	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1059537	3L_1059537_SNP [dm3] 3L_1059537_SNP [dm6]	G	A	2.965e^-4	0.798	INTRON bab1
3R	22518824	3R_22518824_SNP [dm3] 3R_26693102_SNP [dm6]	C	T	2.966e^-4	0.798	SYNONYMOUS_CODING TwdlQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12125164	3L_12125164_SNP [dm3] 3L_12132064_SNP [dm6]	T	C	2.969e^-4	0.798	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8315201	3L_8315201_SNP [dm3] 3L_8322101_SNP [dm6]	C	A	2.974e^-4	0.798	SYNONYMOUS_CODING CG13670
2L	2347636	2L_2347636_SNP [dm3] 2L_2347636_SNP [dm6]	C	T	2.983e^-4	0.798	INTRON CG9967 & 1 other
X	3166793	X_3166793_INS [dm3] X_3272760_INS [dm6]	A	AA	2.984e^-4	0.798	INTRON dnc
2R	8457176	2R_8457176_SNP [dm3] 2R_12569671_SNP [dm6]	G	C	2.993e^-4	0.798	UPSTREAM stil DOWNSTREAM Cyp301a1 INTRON Ak6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	19039037	3L_19039037_SNP [dm3] 3L_19045937_SNP [dm6]	G	T	2.996e^-4	0.798	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14847244	3R_14847244_SNP [dm3] 3R_19021522_SNP [dm6]	C	T	3.005e^-4	0.798	NON_SYNONYMOUS_CODING gukh UTR_3_PRIME gukh DOWNSTREAM CG6005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14803757	3R_14803757_SNP [dm3] 3R_18978035_SNP [dm6]	A	T	3.008e^-4	0.798	UTR_3_PRIME CG42613 DOWNSTREAM CG12269 & 1 other
X	20465076	X_20465076_SNP [dm3] X_20594049_SNP [dm6]	C	T	3.009e^-4	0.798	INTRON RunxA
X	7100856	X_7100856_SNP [dm3] X_7206823_SNP [dm6]	A	G	3.009e^-4	0.798	INTRON CR44357 & 1 other
2R	14656009	2R_14656009_SNP [dm3] 2R_18768504_SNP [dm6]	G	A	3.021e^-4	0.8	SYNONYMOUS_CODING Mctp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14015204	2R_14015204_SNP [dm3] 2R_18127699_SNP [dm6]	G	T	3.028e^-4	0.8	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7194721	2L_7194721_INS [dm3] 2L_7194721_INS [dm6]	T	TT	3.032e^-4	0.8	UPSTREAM CG4497 DOWNSTREAM CG4502 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	20907552	2R_20907552_SNP [dm3] 2R_25020029_SNP [dm6]	C	T	3.033e^-4	0.8	INTRON uzip
X	4288695	X_4288695_SNP [dm3] X_4394662_SNP [dm6]	A	G	3.040e^-4	0.8	UPSTREAM CR32773 INTRON CR32773
3R	7870350	3R_7870350_SNP [dm3] 3R_12044628_SNP [dm6]	C	T	3.043e^-4	0.8	INTERGENIC
3L	12125098	3L_12125098_SNP [dm3] 3L_12131998_SNP [dm6]	A	T	3.051e^-4	0.801	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5883458	2L_5883458_SNP [dm3] 2L_5883458_SNP [dm6]	A	G	3.062e^-4	0.801	UPSTREAM CG44574 DOWNSTREAM Sfp26Ac INTERGENIC
2L	11041281	2L_11041281_SNP [dm3] 2L_11041281_SNP [dm6]	A	G	3.066e^-4	0.801	INTRON Samuel
3R	14318530	3R_14318530_SNP [dm3] 3R_18492808_SNP [dm6]	A	G	3.067e^-4	0.801	INTRON fru
2L	3227633	2L_3227633_SNP [dm3] 2L_3227633_SNP [dm6]	A	G	3.072e^-4	0.801	INTERGENIC
2L	3115869	2L_3115869_SNP [dm3] 2L_3115869_SNP [dm6]	C	A	3.081e^-4	0.801	INTRON toc
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	3.083e^-4	0.801	INTRON bs & 1 other
3L	22558901	3L_22558901_SNP [dm3] 3L_22565801_SNP [dm6]	T	C	3.085e^-4	0.801	INTERGENIC
2L	7249512	2L_7249512_SNP [dm3] 2L_7249512_SNP [dm6]	A	G	3.095e^-4	0.801	UPSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3190807	X_3190807_SNP [dm3] X_3296774_SNP [dm6]	C	T	3.101e^-4	0.801	INTRON dnc
2L	3886507	2L_3886507_SNP [dm3] 2L_3886507_SNP [dm6]	T	C	3.101e^-4	0.801	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	19034831	3L_19034831_SNP [dm3] 3L_19041731_SNP [dm6]	T	C	3.102e^-4	0.801	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	10772151	2L_10772151_SNP [dm3] 2L_10772151_SNP [dm6]	T	A	3.103e^-4	0.801	UTR_3_PRIME CG31869 DOWNSTREAM CG17127
2L	478527	2L_478527_SNP [dm3] 2L_478527_SNP [dm6]	C	T	3.111e^-4	0.801	UTR_5_PRIME cbt INTRON ush & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	15742325	3L_15742325_SNP [dm3] 3L_15749225_SNP [dm6]	A	T	3.113e^-4	0.801	DOWNSTREAM CR45240 INTERGENIC
2R	20380032	2R_20380032_SNP [dm3] 2R_24492509_SNP [dm6]	A	G	3.117e^-4	0.801	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	12125144	3L_12125144_SNP [dm3] 3L_12132044_SNP [dm6]	A	G	3.120e^-4	0.801	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15279176	3R_15279176_SNP [dm3] 3R_19453454_SNP [dm6]	A	T	3.128e^-4	0.801	INTRON CG31221
2L	8255605	2L_8255605_SNP [dm3] 2L_8255605_SNP [dm6]	T	A	3.128e^-4	0.801	INTRON CG8086
2L	19880426	2L_19880426_SNP [dm3] 2L_19880426_SNP [dm6]	A	T	3.134e^-4	0.802	INTRON sick
3L	11528127	3L_11528127_SNP [dm3] 3L_11535027_SNP [dm6]	C	G	3.146e^-4	0.802	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15702390	3L_15702390_DEL [dm3] 3L_15709290_DEL [dm6]	AA	C	3.148e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17755112	3L_17755112_SNP [dm3] 3L_17762012_SNP [dm6]	T	G	3.149e^-4	0.802	INTRON Adgf-A & 2 others
2L	13983524	2L_13983524_SNP [dm3] 2L_13983524_SNP [dm6]	A	G	3.161e^-4	0.804	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
2R	18724361	2R_18724361_SNP [dm3] 2R_22836838_SNP [dm6]	G	A	3.173e^-4	0.805	UPSTREAM CG9825 DOWNSTREAM CG12490 INTERGENIC
3L	22577777	3L_22577777_SNP [dm3] 3L_22584677_SNP [dm6]	A	G	3.174e^-4	0.805	INTRON CG14459	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	22556693	3L_22556693_SNP [dm3] 3L_22563593_SNP [dm6]	C	G	3.177e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7037961	3L_7037961_SNP [dm3] 3L_7044861_SNP [dm6]	T	C	3.181e^-4	0.805	INTRON Mp
3R	20491103	3R_20491103_SNP [dm3] 3R_24665381_SNP [dm6]	A	C	3.184e^-4	0.805	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
3L	8750394	3L_8750394_SNP [dm3] 3L_8757294_SNP [dm6]	G	A	3.213e^-4	0.811	DOWNSTREAM CG6576 INTRON Fhos
3L	7834289	3L_7834289_DEL [dm3] 3L_7841189_DEL [dm6]	GT	G	3.233e^-4	0.815	INTRON Pdp1	regulatory region REDfly_CRMs
2L	11041252	2L_11041252_SNP [dm3] 2L_11041252_SNP [dm6]	T	C	3.239e^-4	0.815	INTRON Samuel
3L	9055968	3L_9055968_SNP [dm3] 3L_9062868_SNP [dm6]	A	T	3.243e^-4	0.815	UTR_5_PRIME Argk INTRON Argk	TF binding site mE1_TFBS_bab1
2L	18587104	2L_18587104_SNP [dm3] 2L_18587104_SNP [dm6]	G	T	3.249e^-4	0.815	INTRON Pde11
X	21887083	X_21887083_SNP [dm3] X_22485247_SNP [dm6]	C	T	3.253e^-4	0.815	NON_SYNONYMOUS_CODING Cp110 INTRON Cp110
2R	20233630	2R_20233630_SNP [dm3] 2R_24346107_SNP [dm6]	C	T	3.258e^-4	0.815	INTRON bs
3L	3116238	3L_3116238_SNP [dm3] 3L_3116238_SNP [dm6]	C	T	3.263e^-4	0.815	INTRON prominin-like
2L	8138858	2L_8138858_SNP [dm3] 2L_8138858_SNP [dm6]	C	T	3.265e^-4	0.815	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	2563130	2L_2563130_SNP [dm3] 2L_2563130_SNP [dm6]	T	C	3.271e^-4	0.816	SPLICE_SITE_REGION Cyp309a1 INTRON Cyp309a1
3L	7820454	3L_7820454_SNP [dm3] 3L_7827354_SNP [dm6]	C	G	3.281e^-4	0.816	INTRON Pdp1
2L	2353137	2L_2353137_SNP [dm3] 2L_2353137_SNP [dm6]	A	C	3.281e^-4	0.816	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13740154	2L_13740154_SNP [dm3] 2L_13740154_SNP [dm6]	G	T	3.297e^-4	0.816	INTERGENIC
X	8770992	X_8770992_SNP [dm3] X_8876959_SNP [dm6]	G	A	3.298e^-4	0.816	UPSTREAM Moe INTRON Moe
X	3522543	X_3522543_SNP [dm3] X_3628510_SNP [dm6]	G	A	3.298e^-4	0.816	INTRON AstA-R1
2R	20223246	2R_20223246_SNP [dm3] 2R_24335723_SNP [dm6]	C	T	3.303e^-4	0.816	EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4635319	3L_4635319_SNP [dm3] 3L_4635319_SNP [dm6]	T	C	3.307e^-4	0.816	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18905611	2R_18905611_SNP [dm3] 2R_23018088_SNP [dm6]	C	A	3.312e^-4	0.816	INTRON twi & 1 other
2L	15319156	2L_15319156_SNP [dm3] 2L_15319156_SNP [dm6]	G	A	3.313e^-4	0.816	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	6267859	3R_6267859_SNP [dm3] 3R_10442137_SNP [dm6]	G	A	3.319e^-4	0.816	INTERGENIC
2L	5375214	2L_5375214_SNP [dm3] 2L_5375214_SNP [dm6]	G	T	3.323e^-4	0.816	INTERGENIC
2L	460361	2L_460361_SNP [dm3] 2L_460361_SNP [dm6]	C	T	3.326e^-4	0.816	UTR_3_PRIME CG4297	TF binding site mE1_TFBS_cad
2L	19880435	2L_19880435_SNP [dm3] 2L_19880435_SNP [dm6]	T	C	3.336e^-4	0.816	INTRON sick
X	8936032	X_8936032_SNP [dm3] X_9041999_SNP [dm6]	C	G	3.336e^-4	0.816	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6013789	2L_6013789_SNP [dm3] 2L_6013789_SNP [dm6]	T	A	3.338e^-4	0.816	SYNONYMOUS_CODING H2.0	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25453959	3R_25453959_SNP [dm3] 3R_29628237_SNP [dm6]	A	G	3.351e^-4	0.816	INTERGENIC
3L	830957	3L_830957_SNP [dm3] 3L_830957_SNP [dm6]	T	C	3.354e^-4	0.816	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Me5.8S-G74 & 2 others DOWNSTREAM snoRNA:Psi18S-110	TF binding site mE1_TFBS_sens
3R	18133864	3R_18133864_SNP [dm3] 3R_22308142_SNP [dm6]	T	C	3.369e^-4	0.816	DOWNSTREAM CG34377 INTERGENIC
X	13489326	X_13489326_DEL [dm3] X_13595293_DEL [dm6]	TA	T	3.369e^-4	0.816	INTRON up
3L	14981522	3L_14981522_SNP [dm3] 3L_14988422_SNP [dm6]	G	A	3.373e^-4	0.816	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10467457	X_10467457_DEL [dm3] X_10573424_DEL [dm6]	CAC	C	3.374e^-4	0.816	INTRON spri
2L	7019883	2L_7019883_SNP [dm3] 2L_7019883_SNP [dm6]	C	A	3.375e^-4	0.816	INTRON ade3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6567271	3L_6567271_SNP [dm3] 3L_6574171_SNP [dm6]	G	A	3.381e^-4	0.816	INTRON CG18769 & 1 other
2L	20645448	2L_20645448_SNP [dm3] 2L_20645448_SNP [dm6]	T	C	3.386e^-4	0.816	UTR_5_PRIME phr6-4 UPSTREAM CG2608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9415022	2R_9415022_SNP [dm3] 2R_13527517_SNP [dm6]	A	T	3.392e^-4	0.816	INTRON Vmat	TF binding site mE1_TFBS_chinmo
2R	18669545	2R_18669545_SNP [dm3] 2R_22782040_SNP [dm6]	G	A	3.395e^-4	0.816	INTRON CG42260
2L	4236298	2L_4236298_SNP [dm3] 2L_4236298_SNP [dm6]	G	T	3.411e^-4	0.816	INTERGENIC
3L	12449561	3L_12449561_SNP [dm3] 3L_12456461_SNP [dm6]	A	G	3.413e^-4	0.816	INTERGENIC
3L	21509099	3L_21509099_DEL [dm3] 3L_21515999_DEL [dm6]	AA	A	3.420e^-4	0.816	UPSTREAM Cdk12 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12518167	3L_12518167_SNP [dm3] 3L_12525067_SNP [dm6]	G	A	3.425e^-4	0.816	SYNONYMOUS_CODING ver DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8634354	X_8634354_SNP [dm3] X_8740321_SNP [dm6]	T	C	3.426e^-4	0.816	INTERGENIC
2L	7046218	2L_7046218_INS [dm3] 2L_7046218_INS [dm6]	C	CGC	3.426e^-4	0.816	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13255207	2L_13255207_SNP [dm3] 2L_13255207_SNP [dm6]	T	A	3.427e^-4	0.816	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3844629	2L_3844629_SNP [dm3] 2L_3844629_SNP [dm6]	G	T	3.430e^-4	0.816	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	20650958	2L_20650958_SNP [dm3] 2L_20650958_SNP [dm6]	A	G	3.435e^-4	0.816	UTR_3_PRIME bru DOWNSTREAM CG18810 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	3885752	3L_3885752_SNP [dm3] 3L_3885752_SNP [dm6]	T	C	3.441e^-4	0.816	UPSTREAM CR43917 INTERGENIC
3R	18084921	3R_18084921_SNP [dm3] 3R_22259199_SNP [dm6]	T	C	3.443e^-4	0.816	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2588945	3R_2588945_SNP [dm3] 3R_6763223_SNP [dm6]	G	A	3.444e^-4	0.816	UPSTREAM Ama & 1 other INTRON Ama EXON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3R	19574028	3R_19574028_SNP [dm3] 3R_23748306_SNP [dm6]	T	C	3.445e^-4	0.816	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
X	5662627	X_5662627_DEL [dm3] X_5768594_DEL [dm6]	TTGTGATATT	GAAC	3.446e^-4	0.816	INTRON CG42699 & 1 other
3R	20267069	3R_20267069_SNP [dm3] 3R_24441347_SNP [dm6]	A	T	3.453e^-4	0.817	DOWNSTREAM CR43455 INTRON nAChRalpha1
2R	15294701	2R_15294701_SNP [dm3] 2R_19407196_SNP [dm6]	A	T	3.467e^-4	0.817	INTRON hts
2L	5485471	2L_5485471_SNP [dm3] 2L_5485471_SNP [dm6]	G	T	3.473e^-4	0.817	INTERGENIC
2L	7291992	2L_7291992_SNP [dm3] 2L_7291992_SNP [dm6]	A	G	3.473e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7292029	2L_7292029_SNP [dm3] 2L_7292029_SNP [dm6]	A	T	3.473e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7068031	2L_7068031_SNP [dm3] 2L_7068031_SNP [dm6]	T	G	3.485e^-4	0.817	NON_SYNONYMOUS_CODING CG11289
3L	2254083	3L_2254083_SNP [dm3] 3L_2254083_SNP [dm6]	T	C	3.486e^-4	0.817	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	6232447	2L_6232447_DEL [dm3] 2L_6232447_DEL [dm6]	AAA	A	3.499e^-4	0.817	DOWNSTREAM CR44823 INTERGENIC
2R	13510339	2R_13510339_SNP [dm3] 2R_17622834_SNP [dm6]	T	G	3.501e^-4	0.817	INTRON CG10936
3L	11036031	3L_11036031_SNP [dm3] 3L_11042931_SNP [dm6]	A	T	3.501e^-4	0.817	INTRON CG43693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	23332202	3R_23332202_SNP [dm3] 3R_27506480_SNP [dm6]	C	G	3.510e^-4	0.817	INTERGENIC
3R	16067426	3R_16067426_INS [dm3] 3R_20241704_INS [dm6]	T	TAGC	3.514e^-4	0.817	INTRON Nlg4
X	5268151	X_5268151_SNP [dm3] X_5374118_SNP [dm6]	A	G	3.517e^-4	0.817	INTRON SK
2L	20138013	2L_20138013_SNP [dm3] 2L_20138013_SNP [dm6]	G	A	3.527e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20258764	2R_20258764_SNP [dm3] 2R_24371241_SNP [dm6]	T	G	3.528e^-4	0.817	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5019500	3R_5019500_SNP [dm3] 3R_9193778_SNP [dm6]	T	A	3.535e^-4	0.817	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	15346435	3L_15346435_INS [dm3] 3L_15353335_INS [dm6]	A	AA	3.536e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25522997	3R_25522997_SNP [dm3] 3R_29697275_SNP [dm6]	C	T	3.558e^-4	0.817	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10512915	3R_10512915_SNP [dm3] 3R_14687193_SNP [dm6]	C	A	3.562e^-4	0.817	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10313723	2L_10313723_SNP [dm3] 2L_10313723_SNP [dm6]	G	T	3.565e^-4	0.817	INTRON CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb
2L	8255601	2L_8255601_SNP [dm3] 2L_8255601_SNP [dm6]	A	C	3.566e^-4	0.817	INTRON CG8086
2L	9626252	2L_9626252_SNP [dm3] 2L_9626252_SNP [dm6]	C	A	3.567e^-4	0.817	UPSTREAM CG31882 INTERGENIC
X	16694966	X_16694966_INS [dm3] X_16800933_INS [dm6]	G	GTGGCTG	3.577e^-4	0.817	UTR_5_PRIME CG4789 UPSTREAM CG9132 DOWNSTREAM CG9125	TF binding site BDTNP1_TFBS_dl
X	7433384	X_7433384_SNP [dm3] X_7539351_SNP [dm6]	G	A	3.578e^-4	0.817	INTRON CG32719
2L	2671948	2L_2671948_SNP [dm3] 2L_2671948_SNP [dm6]	T	G	3.594e^-4	0.817	SYNONYMOUS_CODING Gr23a
2R	8631925	2R_8631925_SNP [dm3] 2R_12744420_SNP [dm6]	A	T	3.595e^-4	0.817	INTRON CG42663
2R	20257397	2R_20257397_SNP [dm3] 2R_24369874_SNP [dm6]	C	T	3.605e^-4	0.817	UPSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20436131	2L_20436131_SNP [dm3] 2L_20436131_SNP [dm6]	G	T	3.614e^-4	0.817	INTRON CG31688
3R	18149467	3R_18149467_SNP [dm3] 3R_22323745_SNP [dm6]	G	T	3.620e^-4	0.817	UTR_5_PRIME CG34377
2L	14109327	2L_14109327_SNP [dm3] 2L_14109327_SNP [dm6]	C	G	3.633e^-4	0.817	UTR_5_PRIME CG15293 UPSTREAM CG15293 DOWNSTREAM CG31769
X	21898929	X_21898929_SNP [dm3] X_22497093_SNP [dm6]	G	C	3.644e^-4	0.817	INTRON l_1_G0196
X	7656015	X_7656015_DEL [dm3] X_7761982_DEL [dm6]	ATGTA	A	3.650e^-4	0.817	INTERGENIC
2R	20214309	2R_20214309_SNP [dm3] 2R_24326786_SNP [dm6]	T	A	3.654e^-4	0.817	INTRON CR44810
2R	20239016	2R_20239016_SNP [dm3] 2R_24351493_SNP [dm6]	A	C	3.656e^-4	0.817	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18118877	3R_18118877_SNP [dm3] 3R_22293155_SNP [dm6]	A	T	3.658e^-4	0.817	DOWNSTREAM mir-1010 INTRON SKIP
3L	12718319	3L_12718319_SNP [dm3] 3L_12725219_SNP [dm6]	T	G	3.661e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15159851	3L_15159851_SNP [dm3] 3L_15166751_SNP [dm6]	C	T	3.666e^-4	0.817	INTERGENIC
2R	15294716	2R_15294716_SNP [dm3] 2R_19407211_SNP [dm6]	C	T	3.667e^-4	0.817	INTRON hts
2R	20249407	2R_20249407_INS [dm3] 2R_24361884_INS [dm6]	T	TT	3.669e^-4	0.817	INTRON bs & 1 other
3R	5096598	3R_5096598_SNP [dm3] 3R_9270876_SNP [dm6]	G	A	3.669e^-4	0.817	DOWNSTREAM Vps16A INTERGENIC
2L	9562632	2L_9562632_DEL [dm3] 2L_9562632_DEL [dm6]	CGACTATGCACTTACAC...	C	3.681e^-4	0.817	INTRON jp
2L	3669983	2L_3669983_SNP [dm3] 2L_3669983_SNP [dm6]	A	C	3.684e^-4	0.817	UPSTREAM CG42463 & 1 other DOWNSTREAM Sfp24Bc INTRON CG34340
3L	11036650	3L_11036650_SNP [dm3] 3L_11043550_SNP [dm6]	G	A	3.689e^-4	0.817	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	1711117	2L_1711117_SNP [dm3] 2L_1711117_SNP [dm6]	G	A	3.690e^-4	0.817	SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18366599	X_18366599_SNP [dm3] X_18472566_SNP [dm6]	T	C	3.691e^-4	0.817	INTRON CG32547
3R	9526308	3R_9526308_SNP [dm3] 3R_13700586_SNP [dm6]	C	A	3.695e^-4	0.817	START_GAINED ninaB UTR_5_PRIME ninaB INTRON f-cup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	9000150	X_9000150_SNP [dm3] X_9106117_SNP [dm6]	A	T	3.701e^-4	0.817	UPSTREAM Arfrp1 INTRON Bx42	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	2913600	3R_2913600_SNP [dm3] 3R_7087878_SNP [dm6]	T	C	3.706e^-4	0.817	SYNONYMOUS_CODING alphaTub84B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22501233	3L_22501233_SNP [dm3] 3L_22508133_SNP [dm6]	A	T	3.713e^-4	0.817	INTERGENIC	transposable element FlyBase
2R	1325960	2R_1325960_SNP [dm3] 2R_5438455_SNP [dm6]	T	C	3.713e^-4	0.817	INTRON laccase2	transposable element FlyBase
2L	3376410	2L_3376410_SNP [dm3] 2L_3376410_SNP [dm6]	A	G	3.715e^-4	0.817	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	22504931	3L_22504931_SNP [dm3] 3L_22511831_SNP [dm6]	C	T	3.716e^-4	0.817	DOWNSTREAM CR45429 INTERGENIC
2R	20718474	2R_20718474_SNP [dm3] 2R_24830951_SNP [dm6]	T	G	3.716e^-4	0.817	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6560097	3L_6560097_SNP [dm3] 3L_6566997_SNP [dm6]	T	A	3.717e^-4	0.817	NON_SYNONYMOUS_CODING jv INTRON CG18769
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	3.720e^-4	0.817	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	17105571	3R_17105571_INS [dm3] 3R_21279849_INS [dm6]	T	TTAAGGT	3.731e^-4	0.817	INTRON SIFaR	TF binding site mE1_TFBS_cad
3L	979612	3L_979612_SNP [dm3] 3L_979612_SNP [dm6]	C	T	3.734e^-4	0.817	INTRON Glut1
3L	9553700	3L_9553700_SNP [dm3] 3L_9560600_SNP [dm6]	A	G	3.741e^-4	0.817	INTRON CG42673
2L	13255195	2L_13255195_INS [dm3] 2L_13255195_INS [dm6]	T	TC	3.742e^-4	0.817	INTRON CG31728	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4125848	2L_4125848_SNP [dm3] 2L_4125848_SNP [dm6]	G	T	3.749e^-4	0.817	INTERGENIC
3R	26517847	3R_26517847_SNP [dm3] 3R_30692125_SNP [dm6]	T	C	3.751e^-4	0.817	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12263349	3L_12263349_SNP [dm3] 3L_12270249_SNP [dm6]	A	G	3.754e^-4	0.817	UTR_3_PRIME Pbgs DOWNSTREAM CG32100	TF binding site mE1_TFBS_cad
2L	15023671	2L_15023671_SNP [dm3] 2L_15023671_SNP [dm6]	G	A	3.760e^-4	0.817	INTRON GABA-B-R1
2R	9977600	2R_9977600_SNP [dm3] 2R_14090095_SNP [dm6]	T	G	3.762e^-4	0.817	UPSTREAM CG42287 & 1 other INTRON Prosap
X	7100938	X_7100938_SNP [dm3] X_7206905_SNP [dm6]	G	A	3.764e^-4	0.817	INTRON CR44357 & 1 other
3R	13716835	3R_13716835_SNP [dm3] 3R_17891113_SNP [dm6]	A	G	3.765e^-4	0.817	SYNONYMOUS_CODING Rim INTRON Rim
3L	19205114	3L_19205114_SNP [dm3] 3L_19212014_SNP [dm6]	A	T	3.774e^-4	0.817	INTRON fz2
3L	9649709	3L_9649709_SNP [dm3] 3L_9656609_SNP [dm6]	T	C	3.777e^-4	0.817	INTRON fry & 1 other
2L	2812525	2L_2812525_SNP [dm3] 2L_2812525_SNP [dm6]	A	C	3.778e^-4	0.817	UTR_5_PRIME CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17857019	X_17857019_SNP [dm3] X_17962986_SNP [dm6]	A	T	3.785e^-4	0.817	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	18483030	2L_18483030_SNP [dm3] 2L_18483030_SNP [dm6]	G	A	3.787e^-4	0.817	INTRON CG10283
2L	1212269	2L_1212269_SNP [dm3] 2L_1212269_SNP [dm6]	A	G	3.789e^-4	0.817	INTERGENIC
2L	6013453	2L_6013453_SNP [dm3] 2L_6013453_SNP [dm6]	C	T	3.796e^-4	0.817	SYNONYMOUS_CODING H2.0	TF binding site mE1_TFBS_HSA
2L	18377216	2L_18377216_SNP [dm3] 2L_18377216_SNP [dm6]	A	G	3.808e^-4	0.817	INTRON Fas3
3L	9227356	3L_9227356_SNP [dm3] 3L_9234256_SNP [dm6]	C	A	3.808e^-4	0.817	DOWNSTREAM CG4483 INTERGENIC
2L	16935999	2L_16935999_SNP [dm3] 2L_16935999_SNP [dm6]	C	G	3.813e^-4	0.817	INTERGENIC
3L	21206726	3L_21206726_SNP [dm3] 3L_21213626_SNP [dm6]	G	A	3.818e^-4	0.817	UPSTREAM CG10508 INTRON CG10508	TF binding site mE1_TFBS_cad
X	5361598	X_5361598_SNP [dm3] X_5467565_SNP [dm6]	C	T	3.820e^-4	0.817	INTRON SPR
2R	8757653	2R_8757653_SNP [dm3] 2R_12870148_SNP [dm6]	T	G	3.821e^-4	0.817	UPSTREAM bic & 1 other DOWNSTREAM CR45140 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23470201	3R_23470201_SNP [dm3] 3R_27644479_SNP [dm6]	G	T	3.822e^-4	0.817	INTRON tau
X	5372467	X_5372467_SNP [dm3] X_5478434_SNP [dm6]	T	C	3.829e^-4	0.817	INTRON SPR	TF binding site BDTNP1_TFBS_twi
X	7101716	X_7101716_SNP [dm3] X_7207683_SNP [dm6]	C	T	3.833e^-4	0.817	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2158652	3L_2158652_SNP [dm3] 3L_2158652_SNP [dm6]	G	T	3.835e^-4	0.817	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo
2R	20337872	2R_20337872_SNP [dm3] 2R_24450349_SNP [dm6]	T	C	3.837e^-4	0.817	DOWNSTREAM CG4563 INTERGENIC
3L	1746776	3L_1746776_SNP [dm3] 3L_1746776_SNP [dm6]	A	G	3.844e^-4	0.817	UPSTREAM CG13921 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	9526314	3R_9526314_SNP [dm3] 3R_13700592_SNP [dm6]	A	G	3.848e^-4	0.817	UTR_5_PRIME ninaB INTRON f-cup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	21690676	3R_21690676_SNP [dm3] 3R_25864954_SNP [dm6]	C	T	3.853e^-4	0.817	INTRON CG5890
X	14254431	X_14254431_SNP [dm3] X_14360398_SNP [dm6]	C	A	3.860e^-4	0.817	INTRON dpr8
2R	12685660	2R_12685660_SNP [dm3] 2R_16798155_SNP [dm6]	G	A	3.865e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7228396	X_7228396_SNP [dm3] X_7334363_SNP [dm6]	G	A	3.872e^-4	0.817	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9661252	3L_9661252_SNP [dm3] 3L_9668152_SNP [dm6]	A	G	3.875e^-4	0.817	SYNONYMOUS_CODING fry
2L	1795300	2L_1795300_SNP [dm3] 2L_1795300_SNP [dm6]	C	A	3.887e^-4	0.817	UPSTREAM Gr22a INTERGENIC
3L	11393831	3L_11393831_SNP [dm3] 3L_11400731_SNP [dm6]	T	A	3.898e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22501222	3L_22501222_SNP [dm3] 3L_22508122_SNP [dm6]	C	T	3.911e^-4	0.817	INTERGENIC	transposable element FlyBase
X	1832444	X_1832444_SNP [dm3] X_1938411_SNP [dm6]	T	C	3.911e^-4	0.817	UTR_3_PRIME CG3857	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15742217	3L_15742217_SNP [dm3] 3L_15749117_SNP [dm6]	T	C	3.920e^-4	0.817	DOWNSTREAM CR45240 INTERGENIC
2L	920889	2L_920889_SNP [dm3] 2L_920889_SNP [dm6]	A	G	3.927e^-4	0.817	INTERGENIC
2L	3293594	2L_3293594_SNP [dm3] 2L_3293594_SNP [dm6]	C	G	3.928e^-4	0.817	UTR_5_PRIME CG9664
3L	359327	3L_359327_SNP [dm3] 3L_359327_SNP [dm6]	C	T	3.934e^-4	0.817	SYNONYMOUS_CODING Cdc5 DOWNSTREAM Roc1b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9352282	2R_9352282_SNP [dm3] 2R_13464777_SNP [dm6]	T	G	3.938e^-4	0.817	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5426591	3R_5426591_SNP [dm3] 3R_9600869_SNP [dm6]	T	A	3.940e^-4	0.817	INTRON CG8312
3L	22515710	3L_22515710_SNP [dm3] 3L_22522610_SNP [dm6]	A	T	3.946e^-4	0.817	INTERGENIC
3R	16540332	3R_16540332_SNP [dm3] 3R_20714610_SNP [dm6]	T	C	3.949e^-4	0.817	UPSTREAM Oamb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22526654	3L_22526654_SNP [dm3] 3L_22533554_SNP [dm6]	T	G	3.959e^-4	0.817	INTERGENIC	transposable element FlyBase
2R	18669613	2R_18669613_SNP [dm3] 2R_22782108_SNP [dm6]	A	T	3.972e^-4	0.817	INTRON CG42260
3L	22501953	3L_22501953_INS [dm3] 3L_22508853_INS [dm6]	G	GA	3.975e^-4	0.817	INTERGENIC
2L	5426225	2L_5426225_SNP [dm3] 2L_5426225_SNP [dm6]	G	A	3.975e^-4	0.817	INTERGENIC
3L	21836470	3L_21836470_SNP [dm3] 3L_21843370_SNP [dm6]	C	G	3.987e^-4	0.817	UPSTREAM CG14563 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26596019	3R_26596019_SNP [dm3] 3R_30770297_SNP [dm6]	G	T	3.988e^-4	0.817	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20598173	2L_20598173_SNP [dm3] 2L_20598173_SNP [dm6]	C	T	3.995e^-4	0.817	INTRON CR44909
2L	10313818	2L_10313818_SNP [dm3] 2L_10313818_SNP [dm6]	G	A	3.996e^-4	0.817	UPSTREAM CG4972 INTRON CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb
3L	13037037	3L_13037037_SNP [dm3] 3L_13043937_SNP [dm6]	G	T	3.998e^-4	0.817	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18130548	3L_18130548_SNP [dm3] 3L_18137448_SNP [dm6]	C	T	4.007e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2350295	2L_2350295_SNP [dm3] 2L_2350295_SNP [dm6]	T	C	4.015e^-4	0.817	INTRON CG9967 & 1 other
3L	6559997	3L_6559997_SNP [dm3] 3L_6566897_SNP [dm6]	G	A	4.020e^-4	0.817	SYNONYMOUS_CODING jv INTRON CG18769
3L	18720910	3L_18720910_SNP [dm3] 3L_18727810_SNP [dm6]	T	A	4.031e^-4	0.817	INTERGENIC
2L	11601785	2L_11601785_SNP [dm3] 2L_11601785_SNP [dm6]	T	A	4.032e^-4	0.817	INTRON kek2
2L	15023719	2L_15023719_DEL [dm3] 2L_15023719_DEL [dm6]	CTT	AA	4.039e^-4	0.817	INTRON GABA-B-R1
2R	18664899	2R_18664899_SNP [dm3] 2R_22777394_SNP [dm6]	G	C	4.041e^-4	0.817	INTRON CG42260
2L	19880427	2L_19880427_SNP [dm3] 2L_19880427_SNP [dm6]	A	T	4.045e^-4	0.817	INTRON sick
3L	22531429	3L_22531429_SNP [dm3] 3L_22538329_SNP [dm6]	C	T	4.049e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1269172	2L_1269172_SNP [dm3] 2L_1269172_SNP [dm6]	C	T	4.055e^-4	0.817	INTRON robo3
3L	9244651	3L_9244651_DEL [dm3] 3L_9251551_DEL [dm6]	CAACAGCAAC	C	4.056e^-4	0.817	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10314422	2R_10314422_SNP [dm3] 2R_14426917_SNP [dm6]	A	G	4.058e^-4	0.817	DOWNSTREAM phyl INTERGENIC
3L	22339011	3L_22339011_SNP [dm3] 3L_22345911_SNP [dm6]	C	G	4.060e^-4	0.817	INTRON Ten-m
2L	14218646	2L_14218646_SNP [dm3] 2L_14218646_SNP [dm6]	G	T	4.062e^-4	0.817	INTRON Dyrk2
2L	7932072	2L_7932072_SNP [dm3] 2L_7932072_SNP [dm6]	G	A	4.064e^-4	0.817	INTRON Snoo
3L	10895067	3L_10895067_SNP [dm3] 3L_10901967_SNP [dm6]	A	T	4.066e^-4	0.817	INTERGENIC
2R	8429041	2R_8429041_SNP [dm3] 2R_12541536_SNP [dm6]	G	A	4.080e^-4	0.817	INTRON fra	TF binding site mE1_TFBS_cad
3R	14464632	3R_14464632_SNP [dm3] 3R_18638910_SNP [dm6]	A	C	4.080e^-4	0.817	INTRON qin & 1 other
X	4640396	X_4640396_SNP [dm3] X_4746363_SNP [dm6]	A	G	4.080e^-4	0.817	INTERGENIC
3R	10458164	3R_10458164_SNP [dm3] 3R_14632442_SNP [dm6]	C	T	4.085e^-4	0.817	INTRON CG7886 & 1 other
3L	18831224	3L_18831224_SNP [dm3] 3L_18838124_SNP [dm6]	A	C	4.086e^-4	0.817	INTRON Indy	TF binding site mE1_TFBS_zfh1
3R	7870395	3R_7870395_SNP [dm3] 3R_12044673_SNP [dm6]	T	A	4.095e^-4	0.817	INTERGENIC
X	5330003	X_5330003_SNP [dm3] X_5435970_SNP [dm6]	C	A	4.095e^-4	0.817	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7552462	X_7552462_SNP [dm3] X_7658429_SNP [dm6]	A	C	4.107e^-4	0.817	INTRON ct
3L	13338756	3L_13338756_SNP [dm3] 3L_13345656_SNP [dm6]	T	G	4.107e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15110868	2R_15110868_SNP [dm3] 2R_19223363_SNP [dm6]	A	G	4.115e^-4	0.817	SYNONYMOUS_CODING hppy INTRON hppy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23903399	3R_23903399_SNP [dm3] 3R_28077677_SNP [dm6]	G	A	4.117e^-4	0.817	INTRON CG34362
2L	11265743	2L_11265743_SNP [dm3] 2L_11265743_SNP [dm6]	T	G	4.118e^-4	0.817	NON_SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
2L	10103198	2L_10103198_SNP [dm3] 2L_10103198_SNP [dm6]	C	T	4.118e^-4	0.817	INTRON CG44153 & 1 other
3L	17319905	3L_17319905_SNP [dm3] 3L_17326805_SNP [dm6]	T	C	4.129e^-4	0.817	DOWNSTREAM Or74a INTERGENIC
2L	18997415	2L_18997415_SNP [dm3] 2L_18997415_SNP [dm6]	A	G	4.130e^-4	0.817	UPSTREAM CG31792 INTERGENIC
2L	20781686	2L_20781686_DEL [dm3] 2L_20781686_DEL [dm6]	GTTATCCTTCTAAATGG...	G	4.133e^-4	0.817	INTRON cad	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19035006	3L_19035006_SNP [dm3] 3L_19041906_SNP [dm6]	C	T	4.134e^-4	0.817	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	4371749	3R_4371749_SNP [dm3] 3R_8546027_SNP [dm6]	A	G	4.137e^-4	0.817	UPSTREAM CR45574 EXON CR45575
2L	20036791	2L_20036791_SNP [dm3] 2L_20036791_SNP [dm6]	A	C	4.138e^-4	0.817	INTRON sNPF
2R	16737085	2R_16737085_SNP [dm3] 2R_20849580_SNP [dm6]	T	C	4.147e^-4	0.817	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21648999	3R_21648999_SNP [dm3] 3R_25823277_SNP [dm6]	C	G	4.152e^-4	0.817	DOWNSTREAM CR44949 INTERGENIC
X	7100852	X_7100852_SNP [dm3] X_7206819_SNP [dm6]	A	G	4.154e^-4	0.817	INTRON CR44357 & 1 other
X	7229399	X_7229399_SNP [dm3] X_7335366_SNP [dm6]	T	G	4.155e^-4	0.817	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20639895	2L_20639895_SNP [dm3] 2L_20639895_SNP [dm6]	T	A	4.162e^-4	0.817	UPSTREAM CG31680 DOWNSTREAM CR43158 INTERGENIC
3L	14193565	3L_14193565_SNP [dm3] 3L_14200465_SNP [dm6]	T	C	4.162e^-4	0.817	INTRON nuf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2568837	3L_2568837_SNP [dm3] 3L_2568837_SNP [dm6]	C	T	4.164e^-4	0.817	INTRON msn
2L	9624779	2L_9624779_SNP [dm3] 2L_9624779_SNP [dm6]	G	T	4.172e^-4	0.817	UTR_3_PRIME CG31882
X	7101299	X_7101299_SNP [dm3] X_7207266_SNP [dm6]	C	T	4.172e^-4	0.817	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3R	26142331	3R_26142331_SNP [dm3] 3R_30316609_SNP [dm6]	A	G	4.174e^-4	0.817	INTRON hdc
X	4272332	X_4272332_SNP [dm3] X_4378299_SNP [dm6]	G	C	4.180e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21544616	3R_21544616_SNP [dm3] 3R_25718894_SNP [dm6]	C	T	4.189e^-4	0.817	INTRON LpR2
X	6029482	X_6029482_SNP [dm3] X_6135449_SNP [dm6]	T	C	4.194e^-4	0.817	INTRON Ca-alpha1T
3R	23971633	3R_23971633_SNP [dm3] 3R_28145911_SNP [dm6]	A	T	4.196e^-4	0.817	UPSTREAM CG34354 INTERGENIC
2L	19880429	2L_19880429_SNP [dm3] 2L_19880429_SNP [dm6]	T	A	4.197e^-4	0.817	INTRON sick
X	21454570	X_21454570_SNP [dm3] X_21583543_SNP [dm6]	G	A	4.202e^-4	0.817	UPSTREAM CR44711 INTERGENIC
2L	20635946	2L_20635946_SNP [dm3] 2L_20635946_SNP [dm6]	C	T	4.207e^-4	0.817	DOWNSTREAM CG17472 INTERGENIC	transposable element FlyBase
2L	10315473	2L_10315473_INS [dm3] 2L_10315473_INS [dm6]	A	ATCAAAC	4.208e^-4	0.817	INTRON CG4972	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	21767918	3R_21767918_SNP [dm3] 3R_25942196_SNP [dm6]	A	T	4.209e^-4	0.817	INTRON CCAP-R
X	10084229	X_10084229_SNP [dm3] X_10190196_SNP [dm6]	T	A	4.209e^-4	0.817	INTRON CR44894 & 1 other
3R	13580276	3R_13580276_SNP [dm3] 3R_17754554_SNP [dm6]	A	G	4.215e^-4	0.817	INTRON TyrR
3L	21686884	3L_21686884_SNP [dm3] 3L_21693784_SNP [dm6]	A	G	4.216e^-4	0.817	INTRON CG32447
2L	10102568	2L_10102568_SNP [dm3] 2L_10102568_SNP [dm6]	T	C	4.219e^-4	0.817	INTRON CG44153 & 1 other
3L	14580310	3L_14580310_SNP [dm3] 3L_14587210_SNP [dm6]	G	T	4.223e^-4	0.817	INTRON HGTX
3L	11037692	3L_11037692_SNP [dm3] 3L_11044592_SNP [dm6]	T	C	4.224e^-4	0.817	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
X	8035999	X_8035999_SNP [dm3] X_8141966_SNP [dm6]	C	T	4.225e^-4	0.817	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21649137	3R_21649137_SNP [dm3] 3R_25823415_SNP [dm6]	G	A	4.231e^-4	0.817	DOWNSTREAM CR44949 INTERGENIC
3R	4014324	3R_4014324_INS [dm3] 3R_8188602_INS [dm6]	A	ACATTTAAACTGAACAACAT...	4.237e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12910025	3R_12910025_SNP [dm3] 3R_17084303_SNP [dm6]	A	G	4.244e^-4	0.817	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1197078	3L_1197078_SNP [dm3] 3L_1197078_SNP [dm6]	G	A	4.247e^-4	0.817	SYNONYMOUS_CODING Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20225174	3R_20225174_SNP [dm3] 3R_24399452_SNP [dm6]	G	A	4.248e^-4	0.817	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	5658904	3R_5658904_SNP [dm3] 3R_9833182_SNP [dm6]	C	T	4.248e^-4	0.817	INTRON Teh1	TF binding site BDTNP1_TFBS_dl
X	13433253	X_13433253_SNP [dm3] X_13539220_SNP [dm6]	G	A	4.249e^-4	0.817	INTERGENIC
3L	4759352	3L_4759352_SNP [dm3] 3L_4759352_SNP [dm6]	G	A	4.250e^-4	0.817	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi
X	2655386	X_2655386_SNP [dm3] X_2761353_SNP [dm6]	A	T	4.254e^-4	0.817	INTRON kirre
3L	1200385	3L_1200385_DEL [dm3] 3L_1200385_DEL [dm6]	TG	C	4.256e^-4	0.817	UPSTREAM mwh INTERGENIC
3L	10893923	3L_10893923_SNP [dm3] 3L_10900823_SNP [dm6]	C	T	4.256e^-4	0.817	INTERGENIC
3R	20484671	3R_20484671_SNP [dm3] 3R_24658949_SNP [dm6]	C	G	4.267e^-4	0.817	SYNONYMOUS_CODING CG6695 UTR_3_PRIME CG6695 UPSTREAM CG31126 DOWNSTREAM mir-1003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7692005	X_7692005_SNP [dm3] X_7797972_SNP [dm6]	G	A	4.270e^-4	0.817	INTERGENIC
3R	12626067	3R_12626067_SNP [dm3] 3R_16800345_SNP [dm6]	G	A	4.271e^-4	0.817	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
X	20480453	X_20480453_SNP [dm3] X_20609426_SNP [dm6]	G	A	4.282e^-4	0.817	INTRON RunxA	TF binding site mE1_TFBS_chinmo
2R	20235348	2R_20235348_SNP [dm3] 2R_24347825_SNP [dm6]	C	A	4.282e^-4	0.817	INTRON bs
3L	17590653	3L_17590653_SNP [dm3] 3L_17597553_SNP [dm6]	G	A	4.289e^-4	0.817	NON_SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9112490	2R_9112490_SNP [dm3] 2R_13224985_SNP [dm6]	C	T	4.293e^-4	0.817	UPSTREAM Dp & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14581400	3L_14581400_SNP [dm3] 3L_14588300_SNP [dm6]	C	A	4.297e^-4	0.817	INTRON HGTX
3R	25522889	3R_25522889_SNP [dm3] 3R_29697167_SNP [dm6]	G	A	4.303e^-4	0.817	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19905916	2R_19905916_SNP [dm3] 2R_24018393_SNP [dm6]	A	G	4.304e^-4	0.817	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20315493	2R_20315493_SNP [dm3] 2R_24427970_SNP [dm6]	C	T	4.305e^-4	0.817	UTR_5_PRIME prom
3R	21767930	3R_21767930_SNP [dm3] 3R_25942208_SNP [dm6]	C	A	4.306e^-4	0.817	INTRON CCAP-R
2L	8255658	2L_8255658_DEL [dm3] 2L_8255658_DEL [dm6]	ATCATCG	C	4.313e^-4	0.818	INTRON CG8086
3L	21037359	3L_21037359_DEL [dm3] 3L_21044259_DEL [dm6]	CG	C	4.320e^-4	0.818	INTRON siz	TF binding site mE1_TFBS_sens
3R	11232563	3R_11232563_SNP [dm3] 3R_15406841_SNP [dm6]	C	T	4.332e^-4	0.818	INTRON CG6125
2L	8033406	2L_8033406_SNP [dm3] 2L_8033406_SNP [dm6]	C	A	4.341e^-4	0.818	INTRON CG7367 & 1 other
2L	6057717	2L_6057717_SNP [dm3] 2L_6057717_SNP [dm6]	C	T	4.346e^-4	0.818	SYNONYMOUS_CODING CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17985811	2L_17985811_SNP [dm3] 2L_17985811_SNP [dm6]	G	A	4.347e^-4	0.818	UPSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8937794	X_8937794_SNP [dm3] X_9043761_SNP [dm6]	T	C	4.349e^-4	0.818	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_HSA
3L	2536026	3L_2536026_SNP [dm3] 3L_2536026_SNP [dm6]	T	C	4.362e^-4	0.818	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_chinmo
X	16935051	X_16935051_SNP [dm3] X_17041018_SNP [dm6]	G	C	4.364e^-4	0.818	INTRON CG45002
3L	3189651	3L_3189651_SNP [dm3] 3L_3189651_SNP [dm6]	G	A	4.366e^-4	0.818	NON_SYNONYMOUS_CODING CG42525 UPSTREAM CG14958 DOWNSTREAM CG14965	TF binding site mE1_TFBS_sens
X	21892523	X_21892523_SNP [dm3] X_22490687_SNP [dm6]	G	T	4.370e^-4	0.818	UPSTREAM l_1_G0196 INTRON l_1_G0196 & 1 other
2L	7932568	2L_7932568_SNP [dm3] 2L_7932568_SNP [dm6]	G	A	4.372e^-4	0.818	INTRON Snoo

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.069e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.007322
In_3R_Mo	0.070502

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.4901	0.0143
In_3R_Mo	4.8898	0.0867

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1905 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8488105	3R_8488105_SNP [dm3] 3R_12662383_SNP [dm6]	T	A	7.174e^-7	0.879	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8527008	3R_8527008_SNP [dm3] 3R_12701286_SNP [dm6]	G	A	2.652e^-6	0.879	INTRON Past1
X	17256743	X_17256743_SNP [dm3] X_17362710_SNP [dm6]	G	A	3.176e^-6	0.879	INTERGENIC
X	7433303	X_7433303_SNP [dm3] X_7539270_SNP [dm6]	T	A	3.556e^-6	0.879	INTRON CG32719
2L	3376806	2L_3376806_SNP [dm3] 2L_3376806_SNP [dm6]	T	G	3.777e^-6	0.879	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20304772	3R_20304772_SNP [dm3] 3R_24479050_SNP [dm6]	C	A	4.181e^-6	0.879	INTERGENIC
2R	17864733	2R_17864733_SNP [dm3] 2R_21977228_SNP [dm6]	A	G	4.609e^-6	0.879	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304 & 1 other	TF binding site mE1_TFBS_sens
X	5330003	X_5330003_SNP [dm3] X_5435970_SNP [dm6]	C	A	4.624e^-6	0.879	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3376818	2L_3376818_SNP [dm3] 2L_3376818_SNP [dm6]	C	T	4.734e^-6	0.879	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	7433384	X_7433384_SNP [dm3] X_7539351_SNP [dm6]	G	A	5.470e^-6	0.879	INTRON CG32719
X	7433376	X_7433376_INS [dm3] X_7539343_INS [dm6]	G	GG	5.550e^-6	0.879	INTRON CG32719
X	7433393	X_7433393_SNP [dm3] X_7539360_SNP [dm6]	C	A	6.653e^-6	0.879	INTRON CG32719
X	18418964	X_18418964_SNP [dm3] X_18524931_SNP [dm6]	T	G	6.989e^-6	0.879	INTRON Bx
3R	10511898	3R_10511898_SNP [dm3] 3R_14686176_SNP [dm6]	T	C	7.335e^-6	0.879	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20304801	3R_20304801_DEL [dm3] 3R_24479079_DEL [dm6]	AA	A	8.042e^-6	0.879	INTERGENIC
2L	1176081	2L_1176081_SNP [dm3] 2L_1176081_SNP [dm6]	T	G	8.285e^-6	0.879	INTRON CG4887	TF binding site BDTNP1_TFBS_sna
2L	15186791	2L_15186791_SNP [dm3] 2L_15186791_SNP [dm6]	G	A	9.084e^-6	0.879	INTRON CG4168
2R	14780012	2R_14780012_SNP [dm3] 2R_18892507_SNP [dm6]	A	G	1.341e^-5	0.879	INTRON sano
2L	9608922	2L_9608922_SNP [dm3] 2L_9608922_SNP [dm6]	A	T	1.398e^-5	0.879	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7433354	X_7433354_SNP [dm3] X_7539321_SNP [dm6]	T	A	1.428e^-5	0.879	INTRON CG32719
3R	8544945	3R_8544945_SNP [dm3] 3R_12719223_SNP [dm6]	C	A	1.439e^-5	0.879	INTRON Men	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4300936	2L_4300936_SNP [dm3] 2L_4300936_SNP [dm6]	T	G	1.476e^-5	0.879	INTRON tutl
3L	8093515	3L_8093515_SNP [dm3] 3L_8100415_SNP [dm6]	G	C	1.518e^-5	0.879	UPSTREAM Ect4 INTRON Ect4
X	19342124	X_19342124_SNP [dm3] X_19448091_SNP [dm6]	G	A	1.582e^-5	0.879	INTRON kek5
2L	14616790	2L_14616790_SNP [dm3] 2L_14616790_SNP [dm6]	C	T	1.584e^-5	0.879	SYNONYMOUS_CODING Adh UTR_5_PRIME Adhr UPSTREAM Adhr INTRON osp	TF binding site mE1_TFBS_cad
X	14493018	X_14493018_SNP [dm3] X_14598985_SNP [dm6]	A	T	1.588e^-5	0.879	INTRON CG9413
2L	9614121	2L_9614121_SNP [dm3] 2L_9614121_SNP [dm6]	A	T	1.668e^-5	0.879	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	9608604	2L_9608604_SNP [dm3] 2L_9608604_SNP [dm6]	T	A	1.682e^-5	0.879	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22619080	3R_22619080_SNP [dm3] 3R_26793358_SNP [dm6]	G	A	1.692e^-5	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8476376	3R_8476376_SNP [dm3] 3R_12650654_SNP [dm6]	T	A	1.792e^-5	0.879	INTRON Dtg	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	665734	3L_665734_SNP [dm3] 3L_665734_SNP [dm6]	C	T	1.823e^-5	0.879	INTERGENIC
2R	19373269	2R_19373269_SNP [dm3] 2R_23485746_SNP [dm6]	T	C	1.965e^-5	0.879	INTRON CG43795
2R	14779850	2R_14779850_SNP [dm3] 2R_18892345_SNP [dm6]	A	C	2.019e^-5	0.879	INTRON sano
3L	2047432	3L_2047432_SNP [dm3] 3L_2047432_SNP [dm6]	C	T	2.026e^-5	0.879	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
X	3430506	X_3430506_SNP [dm3] X_3536473_SNP [dm6]	C	T	2.035e^-5	0.879	INTRON CG32791
X	8160396	X_8160396_SNP [dm3] X_8266363_SNP [dm6]	C	T	2.076e^-5	0.879	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	16935406	X_16935406_SNP [dm3] X_17041373_SNP [dm6]	A	G	2.144e^-5	0.879	INTRON CG45002
3R	10966322	3R_10966322_SNP [dm3] 3R_15140600_SNP [dm6]	G	A	2.216e^-5	0.879	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600
3R	8398746	3R_8398746_INS [dm3] 3R_12573024_INS [dm6]	A	ATTGAG	2.270e^-5	0.879	INTRON Octbeta2R
3R	26026664	3R_26026664_SNP [dm3] 3R_30200942_SNP [dm6]	C	A	2.361e^-5	0.879	INTRON CG9743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3378359	2L_3378359_SNP [dm3] 2L_3378359_SNP [dm6]	T	C	2.365e^-5	0.879	SYNONYMOUS_CODING Ptpa
3L	6439795	3L_6439795_SNP [dm3] 3L_6446695_SNP [dm6]	A	G	2.399e^-5	0.879	INTRON CG42747
X	3430515	X_3430515_SNP [dm3] X_3536482_SNP [dm6]	C	A	2.413e^-5	0.879	INTRON CG32791
3L	9654121	3L_9654121_SNP [dm3] 3L_9661021_SNP [dm6]	A	T	2.564e^-5	0.879	INTRON fry	TF binding site BDTNP1_TFBS_twi
3R	3438089	3R_3438089_SNP [dm3] 3R_7612367_SNP [dm6]	T	C	2.585e^-5	0.879	INTRON CG34127
X	15422282	X_15422282_SNP [dm3] X_15528249_SNP [dm6]	T	C	2.672e^-5	0.879	INTRON Ac13E
2L	3376830	2L_3376830_SNP [dm3] 2L_3376830_SNP [dm6]	C	T	2.709e^-5	0.879	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	10482099	X_10482099_SNP [dm3] X_10588066_SNP [dm6]	C	G	2.908e^-5	0.879	INTERGENIC
X	3430518	X_3430518_SNP [dm3] X_3536485_SNP [dm6]	G	C	2.936e^-5	0.879	INTRON CG32791
3R	11211074	3R_11211074_SNP [dm3] 3R_15385352_SNP [dm6]	G	T	2.947e^-5	0.879	NON_SYNONYMOUS_CODING Rbp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8160393	X_8160393_SNP [dm3] X_8266360_SNP [dm6]	T	C	2.947e^-5	0.879	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	1838379	X_1838379_SNP [dm3] X_1944346_SNP [dm6]	A	C	2.964e^-5	0.879	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1832293	X_1832293_SNP [dm3] X_1938260_SNP [dm6]	T	C	2.977e^-5	0.879	UTR_3_PRIME CG3857	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15367244	2L_15367244_SNP [dm3] 2L_15367244_SNP [dm6]	T	C	2.990e^-5	0.879	INTERGENIC
X	7433355	X_7433355_SNP [dm3] X_7539322_SNP [dm6]	G	A	3.009e^-5	0.879	INTRON CG32719
3L	20537695	3L_20537695_SNP [dm3] 3L_20544595_SNP [dm6]	G	C	3.043e^-5	0.879	INTERGENIC
2R	19373277	2R_19373277_SNP [dm3] 2R_23485754_SNP [dm6]	A	C	3.107e^-5	0.879	INTRON CG43795
3R	22543937	3R_22543937_SNP [dm3] 3R_26718215_SNP [dm6]	G	C	3.172e^-5	0.879	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12547479	2R_12547479_SNP [dm3] 2R_16659974_SNP [dm6]	T	G	3.284e^-5	0.879	UPSTREAM Picot INTRON Picot
2L	18039871	2L_18039871_SNP [dm3] 2L_18039871_SNP [dm6]	T	A	3.284e^-5	0.879	INTRON rdo
X	1822604	X_1822604_SNP [dm3] X_1928571_SNP [dm6]	C	T	3.290e^-5	0.879	SYNONYMOUS_CODING CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	583001	2L_583001_SNP [dm3] 2L_583001_SNP [dm6]	A	T	3.322e^-5	0.879	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11037690	3L_11037690_SNP [dm3] 3L_11044590_SNP [dm6]	C	T	3.349e^-5	0.879	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	14109327	2L_14109327_SNP [dm3] 2L_14109327_SNP [dm6]	C	G	3.483e^-5	0.879	UTR_5_PRIME CG15293 UPSTREAM CG15293 DOWNSTREAM CG31769
3R	8527107	3R_8527107_SNP [dm3] 3R_12701385_SNP [dm6]	T	C	3.496e^-5	0.879	INTRON Past1
X	18967493	X_18967493_SNP [dm3] X_19073460_SNP [dm6]	G	T	3.544e^-5	0.879	INTERGENIC
3R	8380171	3R_8380171_SNP [dm3] 3R_12554449_SNP [dm6]	G	A	3.554e^-5	0.879	SYNONYMOUS_CODING Octbeta2R
2L	3378521	2L_3378521_SNP [dm3] 2L_3378521_SNP [dm6]	G	A	3.575e^-5	0.879	UTR_3_PRIME Ptpa
3R	20304791	3R_20304791_SNP [dm3] 3R_24479069_SNP [dm6]	A	T	3.583e^-5	0.879	INTERGENIC
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	3.730e^-5	0.879	DOWNSTREAM CG32523 INTRON CG32521
2L	3698288	2L_3698288_SNP [dm3] 2L_3698288_SNP [dm6]	G	A	3.744e^-5	0.879	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2L	12943651	2L_12943651_SNP [dm3] 2L_12943651_SNP [dm6]	C	A	3.768e^-5	0.879	INTERGENIC
2L	9611301	2L_9611301_SNP [dm3] 2L_9611301_SNP [dm6]	A	G	3.785e^-5	0.879	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9611386	2L_9611386_SNP [dm3] 2L_9611386_SNP [dm6]	T	C	3.785e^-5	0.879	INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6867831	3R_6867831_SNP [dm3] 3R_11042109_SNP [dm6]	G	A	3.922e^-5	0.879	INTRON CG34114
3L	1682162	3L_1682162_SNP [dm3] 3L_1682162_SNP [dm6]	T	A	4.069e^-5	0.879	INTRON CG7991
2L	9612385	2L_9612385_SNP [dm3] 2L_9612385_SNP [dm6]	C	T	4.089e^-5	0.879	SYNONYMOUS_CODING gcm2 UPSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3494106	2L_3494106_SNP [dm3] 2L_3494106_SNP [dm6]	G	C	4.120e^-5	0.879	UTR_3_PRIME tim
2L	9078590	2L_9078590_SNP [dm3] 2L_9078590_SNP [dm6]	A	T	4.152e^-5	0.879	DOWNSTREAM CG12439 INTERGENIC
2L	11640890	2L_11640890_SNP [dm3] 2L_11640890_SNP [dm6]	C	T	4.169e^-5	0.879	INTERGENIC
2R	18381794	2R_18381794_SNP [dm3] 2R_22494289_SNP [dm6]	G	T	4.178e^-5	0.879	UTR_3_PRIME CG4610 DOWNSTREAM px
2R	9667913	2R_9667913_SNP [dm3] 2R_13780408_SNP [dm6]	T	C	4.207e^-5	0.879	UPSTREAM S-Lap7 INTRON Cpr50Ca
3L	12437125	3L_12437125_SNP [dm3] 3L_12444025_SNP [dm6]	G	A	4.218e^-5	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	1824354	X_1824354_SNP [dm3] X_1930321_SNP [dm6]	C	A	4.253e^-5	0.879	UTR_3_PRIME CG11596
3R	22543916	3R_22543916_SNP [dm3] 3R_26718194_SNP [dm6]	T	C	4.326e^-5	0.879	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20304785	3R_20304785_SNP [dm3] 3R_24479063_SNP [dm6]	A	T	4.328e^-5	0.879	INTERGENIC
2L	9614289	2L_9614289_SNP [dm3] 2L_9614289_SNP [dm6]	C	A	4.341e^-5	0.879	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
X	5329994	X_5329994_SNP [dm3] X_5435961_SNP [dm6]	A	C	4.416e^-5	0.879	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23451155	3R_23451155_SNP [dm3] 3R_27625433_SNP [dm6]	C	T	4.501e^-5	0.879	INTRON Tusp & 1 other
2L	14108972	2L_14108972_SNP [dm3] 2L_14108972_SNP [dm6]	A	G	4.510e^-5	0.879	SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
2L	9078595	2L_9078595_SNP [dm3] 2L_9078595_SNP [dm6]	A	C	4.522e^-5	0.879	DOWNSTREAM CG12439 INTERGENIC
X	14493016	X_14493016_SNP [dm3] X_14598983_SNP [dm6]	A	G	4.543e^-5	0.879	INTRON CG9413
2L	17943201	2L_17943201_SNP [dm3] 2L_17943201_SNP [dm6]	G	T	4.548e^-5	0.879	INTERGENIC
2R	10089121	2R_10089121_SNP [dm3] 2R_14201616_SNP [dm6]	A	G	4.585e^-5	0.879	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17220143	X_17220143_SNP [dm3] X_17326110_SNP [dm6]	C	T	4.656e^-5	0.879	INTERGENIC
3R	19889837	3R_19889837_SNP [dm3] 3R_24064115_SNP [dm6]	C	A	4.668e^-5	0.879	DOWNSTREAM 4EHP INTRON 4EHP
X	16607976	X_16607976_SNP [dm3] X_16713943_SNP [dm6]	G	A	4.700e^-5	0.879	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
X	14469863	X_14469863_SNP [dm3] X_14575830_SNP [dm6]	A	T	4.727e^-5	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7115019	3R_7115019_SNP [dm3] 3R_11289297_SNP [dm6]	T	C	4.741e^-5	0.879	INTRON CR31386
2L	9608815	2L_9608815_SNP [dm3] 2L_9608815_SNP [dm6]	A	C	4.759e^-5	0.879	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16608285	2R_16608285_SNP [dm3] 2R_20720780_SNP [dm6]	C	G	4.764e^-5	0.879	INTRON dpr
3L	11037692	3L_11037692_SNP [dm3] 3L_11044592_SNP [dm6]	T	C	4.786e^-5	0.879	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	22543921	3R_22543921_INS [dm3] 3R_26718199_INS [dm6]	A	AA	4.884e^-5	0.879	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19373265	2R_19373265_SNP [dm3] 2R_23485742_SNP [dm6]	G	A	5.005e^-5	0.879	INTRON CG43795
3L	11699163	3L_11699163_SNP [dm3] 3L_11706063_SNP [dm6]	A	G	5.015e^-5	0.879	INTRON CG11658
2L	11772198	2L_11772198_SNP [dm3] 2L_11772198_SNP [dm6]	G	T	5.036e^-5	0.879	INTERGENIC
2L	12943627	2L_12943627_SNP [dm3] 2L_12943627_SNP [dm6]	G	A	5.107e^-5	0.879	INTERGENIC
X	14544412	X_14544412_SNP [dm3] X_14650379_SNP [dm6]	C	A	5.109e^-5	0.879	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	15121035	2L_15121035_INS [dm3] 2L_15121035_INS [dm6]	T	TT	5.136e^-5	0.879	DOWNSTREAM CR43853 INTERGENIC
2L	9608872	2L_9608872_SNP [dm3] 2L_9608872_SNP [dm6]	A	T	5.158e^-5	0.879	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22543892	3R_22543892_SNP [dm3] 3R_26718170_SNP [dm6]	C	A	5.279e^-5	0.879	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14099451	3L_14099451_SNP [dm3] 3L_14106351_SNP [dm6]	T	A	5.345e^-5	0.879	INTRON Sox21a	TF binding site mE1_TFBS_Kr
3R	26963526	3R_26963526_SNP [dm3] 3R_31137804_SNP [dm6]	G	A	5.407e^-5	0.879	INTRON Gycbeta100B
X	15493122	X_15493122_SNP [dm3] X_15599089_SNP [dm6]	C	T	5.409e^-5	0.879	INTERGENIC
2L	15399593	2L_15399593_SNP [dm3] 2L_15399593_SNP [dm6]	C	T	5.475e^-5	0.879	UPSTREAM CR45373 DOWNSTREAM CR45374 EXON CR44860
2L	15399588	2L_15399588_SNP [dm3] 2L_15399588_SNP [dm6]	A	G	5.526e^-5	0.879	UPSTREAM CR45373 DOWNSTREAM CR45374 EXON CR44860
3R	24747756	3R_24747756_SNP [dm3] 3R_28922034_SNP [dm6]	C	T	5.529e^-5	0.879	UTR_3_PRIME Doa DOWNSTREAM Doa	TF binding site BDTNP1_TFBS_twi
2L	3383135	2L_3383135_SNP [dm3] 2L_3383135_SNP [dm6]	A	T	5.530e^-5	0.879	INTERGENIC
3R	19573088	3R_19573088_SNP [dm3] 3R_23747366_SNP [dm6]	T	C	5.601e^-5	0.879	NON_SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1280192	3L_1280192_INS [dm3] 3L_1280192_INS [dm6]	G	GTCCCACCACCGAGG...	5.624e^-5	0.879	INTRON CG32333
3R	20304786	3R_20304786_SNP [dm3] 3R_24479064_SNP [dm6]	C	A	5.920e^-5	0.904	INTERGENIC
X	14544470	X_14544470_SNP [dm3] X_14650437_SNP [dm6]	C	G	5.939e^-5	0.904	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	15305510	3L_15305510_DEL [dm3] 3L_15312410_DEL [dm6]	TTT	AG	5.957e^-5	0.904	INTERGENIC	TF binding site mE1_TFBS_sens
X	19896686	X_19896686_SNP [dm3] X_20002653_SNP [dm6]	A	T	5.979e^-5	0.904	UPSTREAM CG17003 INTERGENIC
X	16808372	X_16808372_SNP [dm3] X_16914339_SNP [dm6]	T	G	6.116e^-5	0.904	INTRON CG4928	TF binding site mE1_TFBS_HSA
2R	20203509	2R_20203509_SNP [dm3] 2R_24315986_SNP [dm6]	G	C	6.157e^-5	0.904	INTERGENIC
3R	8097773	3R_8097773_SNP [dm3] 3R_12272051_SNP [dm6]	A	T	6.193e^-5	0.904	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13997451	2R_13997451_SNP [dm3] 2R_18109946_SNP [dm6]	C	G	6.198e^-5	0.904	UPSTREAM CG34196 INTERGENIC
3R	8527124	3R_8527124_SNP [dm3] 3R_12701402_SNP [dm6]	C	T	6.268e^-5	0.904	INTRON Past1
2L	583323	2L_583323_SNP [dm3] 2L_583323_SNP [dm6]	T	G	6.278e^-5	0.904	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6787263	X_6787263_SNP [dm3] X_6893230_SNP [dm6]	T	A	6.395e^-5	0.904	INTERGENIC
3R	20304719	3R_20304719_SNP [dm3] 3R_24478997_SNP [dm6]	A	T	6.469e^-5	0.904	INTERGENIC
X	14493037	X_14493037_SNP [dm3] X_14599004_SNP [dm6]	A	G	6.488e^-5	0.904	INTRON CG9413
3R	15191056	3R_15191056_SNP [dm3] 3R_19365334_SNP [dm6]	G	T	6.550e^-5	0.904	INTERGENIC
X	6787242	X_6787242_SNP [dm3] X_6893209_SNP [dm6]	C	T	6.561e^-5	0.904	INTERGENIC
2R	20203510	2R_20203510_SNP [dm3] 2R_24315987_SNP [dm6]	A	T	6.602e^-5	0.904	INTERGENIC
2L	1306898	2L_1306898_SNP [dm3] 2L_1306898_SNP [dm6]	G	T	6.647e^-5	0.904	INTERGENIC
X	18730153	X_18730153_DEL [dm3] X_18836120_DEL [dm6]	TCT	T	6.651e^-5	0.904	INTRON Pvf1
2L	19889738	2L_19889738_SNP [dm3] 2L_19889738_SNP [dm6]	G	A	6.729e^-5	0.908	DOWNSTREAM CG10481 INTRON sick
3R	19491446	3R_19491446_SNP [dm3] 3R_23665724_SNP [dm6]	C	T	7.017e^-5	0.916	INTRON CG31145
3R	18084724	3R_18084724_SNP [dm3] 3R_22259002_SNP [dm6]	T	G	7.035e^-5	0.916	INTRON SKIP	TF binding site mE1_TFBS_chinmo
X	1836571	X_1836571_SNP [dm3] X_1942538_SNP [dm6]	G	C	7.040e^-5	0.916	UTR_5_PRIME Hr4	TF binding site BDTNP1_TFBS_dl
2L	9608885	2L_9608885_SNP [dm3] 2L_9608885_SNP [dm6]	C	T	7.153e^-5	0.916	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8548810	3R_8548810_SNP [dm3] 3R_12723088_SNP [dm6]	T	G	7.189e^-5	0.916	UPSTREAM Men INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14109379	2L_14109379_SNP [dm3] 2L_14109379_SNP [dm6]	A	C	7.205e^-5	0.916	START_GAINED CG15293 UTR_5_PRIME CG15293 UPSTREAM CG15293 DOWNSTREAM CG31769
2L	14109351	2L_14109351_SNP [dm3] 2L_14109351_SNP [dm6]	C	T	7.282e^-5	0.916	UTR_5_PRIME CG15293 UPSTREAM CG15293 DOWNSTREAM CG31769
2L	9614364	2L_9614364_SNP [dm3] 2L_9614364_SNP [dm6]	A	C	7.289e^-5	0.916	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13997546	2R_13997546_SNP [dm3] 2R_18110041_SNP [dm6]	G	T	7.342e^-5	0.916	SYNONYMOUS_CODING CG34196
3R	26559419	3R_26559419_SNP [dm3] 3R_30733697_SNP [dm6]	G	A	7.380e^-5	0.916	INTERGENIC
3L	14581374	3L_14581374_SNP [dm3] 3L_14588274_SNP [dm6]	T	C	7.404e^-5	0.916	INTRON HGTX
3R	8460221	3R_8460221_SNP [dm3] 3R_12634499_SNP [dm6]	T	C	7.496e^-5	0.916	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3R	22618372	3R_22618372_SNP [dm3] 3R_26792650_SNP [dm6]	C	T	7.518e^-5	0.916	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10173035	3L_10173035_SNP [dm3] 3L_10179935_SNP [dm6]	C	T	7.522e^-5	0.916	INTRON dpr10
3L	21142425	3L_21142425_SNP [dm3] 3L_21149325_SNP [dm6]	G	A	7.584e^-5	0.916	INTRON Ac78C
2L	15225218	2L_15225218_SNP [dm3] 2L_15225218_SNP [dm6]	A	T	7.826e^-5	0.916	INTERGENIC
2L	5879765	2L_5879765_SNP [dm3] 2L_5879765_SNP [dm6]	G	C	7.847e^-5	0.916	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	22556737	3L_22556737_DEL [dm3] 3L_22563637_DEL [dm6]	CG	C	7.864e^-5	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7770853	2L_7770853_MNP [dm3] 2L_7770853_MNP [dm6]	ACA	GAG	7.908e^-5	0.916	INTRON CG7191
2L	17941517	2L_17941517_SNP [dm3] 2L_17941517_SNP [dm6]	G	C	7.952e^-5	0.916	INTERGENIC
2L	7770846	2L_7770846_SNP [dm3] 2L_7770846_SNP [dm6]	G	C	8.014e^-5	0.916	INTRON CG7191
X	21453953	X_21453953_SNP [dm3] X_21582926_SNP [dm6]	G	T	8.022e^-5	0.916	UPSTREAM CR44711 INTERGENIC
X	19160188	X_19160188_SNP [dm3] X_19266155_SNP [dm6]	A	T	8.103e^-5	0.916	DOWNSTREAM CG8010 INTRON Vav
X	9053112	X_9053112_SNP [dm3] X_9159079_SNP [dm6]	G	A	8.137e^-5	0.916	UPSTREAM Ost48 DOWNSTREAM CG9034 INTRON Dip1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13744340	2R_13744340_SNP [dm3] 2R_17856835_SNP [dm6]	T	G	8.226e^-5	0.916	NON_SYNONYMOUS_CODING olf186-F INTRON olf186-F
3L	1456225	3L_1456225_SNP [dm3] 3L_1456225_SNP [dm6]	G	A	8.238e^-5	0.916	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	4694512	3R_4694512_SNP [dm3] 3R_8868790_SNP [dm6]	T	C	8.500e^-5	0.916	INTRON pyd
3R	20304688	3R_20304688_SNP [dm3] 3R_24478966_SNP [dm6]	A	T	8.568e^-5	0.916	INTERGENIC
3R	9161887	3R_9161887_SNP [dm3] 3R_13336165_SNP [dm6]	A	T	8.633e^-5	0.916	INTERGENIC
2L	15212232	2L_15212232_SNP [dm3] 2L_15212232_SNP [dm6]	T	A	8.674e^-5	0.916	INTERGENIC
2R	20219756	2R_20219756_SNP [dm3] 2R_24332233_SNP [dm6]	G	A	8.689e^-5	0.916	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11709327	3L_11709327_SNP [dm3] 3L_11716227_SNP [dm6]	T	C	8.857e^-5	0.916	UPSTREAM CG14132 INTERGENIC
3R	8522649	3R_8522649_SNP [dm3] 3R_12696927_SNP [dm6]	A	G	8.880e^-5	0.916	SYNONYMOUS_STOP NijC UTR_3_PRIME NijC UPSTREAM Past1 INTRON NijC
2L	17817269	2L_17817269_SNP [dm3] 2L_17817269_SNP [dm6]	A	G	8.901e^-5	0.916	INTRON CadN2
X	18730110	X_18730110_SNP [dm3] X_18836077_SNP [dm6]	T	G	8.964e^-5	0.916	INTRON Pvf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3376047	2L_3376047_SNP [dm3] 2L_3376047_SNP [dm6]	C	T	8.968e^-5	0.916	UTR_3_PRIME CG9662 UPSTREAM CG15412 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9718666	2L_9718666_SNP [dm3] 2L_9718666_SNP [dm6]	C	A	8.989e^-5	0.916	INTRON Nckx30C
3R	8477681	3R_8477681_SNP [dm3] 3R_12651959_SNP [dm6]	T	A	9.060e^-5	0.916	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16535728	X_16535728_SNP [dm3] X_16641695_SNP [dm6]	C	A	9.107e^-5	0.916	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	20483059	X_20483059_INS [dm3] X_20612032_INS [dm6]	T	TA	9.116e^-5	0.916	INTRON RunxA
2L	14109329	2L_14109329_SNP [dm3] 2L_14109329_SNP [dm6]	T	A	9.122e^-5	0.916	UTR_5_PRIME CG15293 UPSTREAM CG15293 DOWNSTREAM CG31769
X	1832695	X_1832695_SNP [dm3] X_1938662_SNP [dm6]	G	A	9.135e^-5	0.916	SYNONYMOUS_CODING CG3857	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13047126	3L_13047126_SNP [dm3] 3L_13054026_SNP [dm6]	A	T	9.266e^-5	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8460552	3R_8460552_SNP [dm3] 3R_12634830_SNP [dm6]	T	G	9.318e^-5	0.916	UPSTREAM CG11598 DOWNSTREAM CG18530 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19435675	X_19435675_SNP [dm3] X_19541642_SNP [dm6]	G	A	9.355e^-5	0.916	INTRON CG32532
3L	6560042	3L_6560042_SNP [dm3] 3L_6566942_SNP [dm6]	G	A	9.362e^-5	0.916	SYNONYMOUS_CODING jv INTRON CG18769
3R	8460305	3R_8460305_SNP [dm3] 3R_12634583_SNP [dm6]	G	T	9.407e^-5	0.916	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
X	15105720	X_15105720_SNP [dm3] X_15211687_SNP [dm6]	A	C	9.428e^-5	0.916	DOWNSTREAM CG5662 INTERGENIC
3R	20924737	3R_20924737_SNP [dm3] 3R_25099015_SNP [dm6]	T	A	9.609e^-5	0.916	INTRON CG33095 & 1 other
3R	22543955	3R_22543955_SNP [dm3] 3R_26718233_SNP [dm6]	A	C	9.617e^-5	0.916	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17645313	2R_17645313_SNP [dm3] 2R_21757808_SNP [dm6]	C	T	9.624e^-5	0.916	SYNONYMOUS_CODING Grx-1
2L	12943633	2L_12943633_INS [dm3] 2L_12943633_INS [dm6]	C	CCGTTCGTA	9.668e^-5	0.916	INTERGENIC
2L	4829197	2L_4829197_SNP [dm3] 2L_4829197_SNP [dm6]	G	C	9.790e^-5	0.916	DOWNSTREAM CG2976 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7868667	2L_7868667_SNP [dm3] 2L_7868667_SNP [dm6]	G	A	9.827e^-5	0.916	INTRON Proc
3R	20304817	3R_20304817_SNP [dm3] 3R_24479095_SNP [dm6]	C	T	9.875e^-5	0.916	INTERGENIC
3R	13716835	3R_13716835_SNP [dm3] 3R_17891113_SNP [dm6]	A	G	9.875e^-5	0.916	SYNONYMOUS_CODING Rim INTRON Rim
3R	16803290	3R_16803290_SNP [dm3] 3R_20977568_SNP [dm6]	A	T	1.003e^-4	0.916	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18079115	2R_18079115_SNP [dm3] 2R_22191610_SNP [dm6]	T	A	1.013e^-4	0.916	INTRON Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3698237	2L_3698237_SNP [dm3] 2L_3698237_SNP [dm6]	G	A	1.013e^-4	0.916	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3R	7674300	3R_7674300_SNP [dm3] 3R_11848578_SNP [dm6]	A	C	1.018e^-4	0.916	INTRON CG6959	TF binding site mE1_TFBS_cad
3R	23141637	3R_23141637_SNP [dm3] 3R_27315915_SNP [dm6]	A	G	1.028e^-4	0.916	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	18730164	X_18730164_SNP [dm3] X_18836131_SNP [dm6]	A	T	1.032e^-4	0.916	INTRON Pvf1
2L	3376254	2L_3376254_SNP [dm3] 2L_3376254_SNP [dm6]	A	G	1.039e^-4	0.916	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	1832444	X_1832444_SNP [dm3] X_1938411_SNP [dm6]	T	C	1.041e^-4	0.916	UTR_3_PRIME CG3857	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16156490	X_16156490_SNP [dm3] X_16262457_SNP [dm6]	G	A	1.043e^-4	0.916	INTERGENIC
X	18730120	X_18730120_SNP [dm3] X_18836087_SNP [dm6]	T	G	1.045e^-4	0.916	INTRON Pvf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3915529	3L_3915529_SNP [dm3] 3L_3915529_SNP [dm6]	A	T	1.048e^-4	0.916	INTRON Eip63F-1
3R	22412524	3R_22412524_SNP [dm3] 3R_26586802_SNP [dm6]	T	A	1.054e^-4	0.916	UTR_3_PRIME scrib INTRON scrib
X	16808382	X_16808382_SNP [dm3] X_16914349_SNP [dm6]	A	G	1.055e^-4	0.916	INTRON CG4928	TF binding site mE1_TFBS_HSA
3R	15191085	3R_15191085_DEL [dm3] 3R_19365363_DEL [dm6]	TG	T	1.056e^-4	0.916	INTERGENIC
2R	14780024	2R_14780024_SNP [dm3] 2R_18892519_SNP [dm6]	C	T	1.057e^-4	0.916	INTRON sano
3L	18714300	3L_18714300_SNP [dm3] 3L_18721200_SNP [dm6]	G	A	1.062e^-4	0.916	DOWNSTREAM CG12477 INTERGENIC
2R	14531825	2R_14531825_SNP [dm3] 2R_18644320_SNP [dm6]	A	G	1.074e^-4	0.916	INTRON SP2637
2L	9613022	2L_9613022_SNP [dm3] 2L_9613022_SNP [dm6]	G	A	1.075e^-4	0.916	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7375459	3L_7375459_SNP [dm3] 3L_7382359_SNP [dm6]	T	A	1.075e^-4	0.916	UPSTREAM SMSr INTRON smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16090088	2R_16090088_SNP [dm3] 2R_20202583_SNP [dm6]	T	G	1.081e^-4	0.916	INTERGENIC
2R	20203520	2R_20203520_SNP [dm3] 2R_24315997_SNP [dm6]	C	T	1.083e^-4	0.916	INTERGENIC
X	1837714	X_1837714_SNP [dm3] X_1943681_SNP [dm6]	A	C	1.084e^-4	0.916	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15399603	2L_15399603_SNP [dm3] 2L_15399603_SNP [dm6]	G	A	1.084e^-4	0.916	UPSTREAM CR45373 DOWNSTREAM CR45374 EXON CR44860
2L	15399613	2L_15399613_SNP [dm3] 2L_15399613_SNP [dm6]	C	A	1.084e^-4	0.916	UPSTREAM CR45373 DOWNSTREAM CR45374 EXON CR44860
3L	7207992	3L_7207992_SNP [dm3] 3L_7214892_SNP [dm6]	C	G	1.085e^-4	0.916	INTERGENIC
3L	14066096	3L_14066096_SNP [dm3] 3L_14072996_SNP [dm6]	C	T	1.087e^-4	0.916	SYNONYMOUS_CODING Pex1
2R	14984882	2R_14984882_SNP [dm3] 2R_19097377_SNP [dm6]	A	G	1.103e^-4	0.916	INTRON 5-HT1A
3L	18030804	3L_18030804_SNP [dm3] 3L_18037704_SNP [dm6]	T	C	1.111e^-4	0.916	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3764849	3L_3764849_SNP [dm3] 3L_3764849_SNP [dm6]	C	T	1.111e^-4	0.916	INTRON CG32264
3R	18704184	3R_18704184_SNP [dm3] 3R_22878462_SNP [dm6]	A	C	1.134e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14005574	3L_14005574_SNP [dm3] 3L_14012474_SNP [dm6]	C	A	1.140e^-4	0.916	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19916308	2R_19916308_SNP [dm3] 2R_24028785_SNP [dm6]	A	G	1.148e^-4	0.916	UTR_5_PRIME HSPC300 UPSTREAM CG3163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	14181404	3L_14181404_SNP [dm3] 3L_14188304_SNP [dm6]	G	C	1.151e^-4	0.916	INTRON nan
2R	20216744	2R_20216744_SNP [dm3] 2R_24329221_SNP [dm6]	C	T	1.152e^-4	0.916	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
X	19443902	X_19443902_SNP [dm3] X_19549869_SNP [dm6]	T	C	1.152e^-4	0.916	INTERGENIC
2R	20215213	2R_20215213_SNP [dm3] 2R_24327690_SNP [dm6]	A	G	1.158e^-4	0.916	INTRON CR44810
2L	3698228	2L_3698228_SNP [dm3] 2L_3698228_SNP [dm6]	T	A	1.164e^-4	0.916	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	1.164e^-4	0.916	INTRON Dh44
3L	8904913	3L_8904913_SNP [dm3] 3L_8911813_SNP [dm6]	G	T	1.170e^-4	0.916	SPLICE_SITE_REGION mfr UPSTREAM Tsp66E INTRON mfr
2R	6435265	2R_6435265_SNP [dm3] 2R_10547760_SNP [dm6]	A	C	1.173e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22543936	3R_22543936_SNP [dm3] 3R_26718214_SNP [dm6]	T	C	1.175e^-4	0.916	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18448150	3R_18448150_SNP [dm3] 3R_22622428_SNP [dm6]	A	G	1.187e^-4	0.916	NON_SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21568313	3R_21568313_SNP [dm3] 3R_25742591_SNP [dm6]	T	A	1.188e^-4	0.916	INTRON LpR1
2L	1698400	2L_1698400_SNP [dm3] 2L_1698400_SNP [dm6]	A	G	1.190e^-4	0.916	UTR_3_PRIME chinmo DOWNSTREAM chinmo
3R	15191216	3R_15191216_SNP [dm3] 3R_19365494_SNP [dm6]	C	T	1.196e^-4	0.916	INTERGENIC
2L	949466	2L_949466_SNP [dm3] 2L_949466_SNP [dm6]	A	G	1.200e^-4	0.916	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8542084	3R_8542084_SNP [dm3] 3R_12716362_SNP [dm6]	G	A	1.203e^-4	0.916	INTRON Men
2L	7132708	2L_7132708_DEL [dm3] 2L_7132708_DEL [dm6]	CC	C	1.209e^-4	0.916	INTRON Pvf3
2L	12943667	2L_12943667_DEL [dm3] 2L_12943667_DEL [dm6]	AA	A	1.211e^-4	0.916	INTERGENIC
X	16489828	X_16489828_SNP [dm3] X_16595795_SNP [dm6]	T	A	1.212e^-4	0.916	UTR_3_PRIME crl & 1 other DOWNSTREAM crl & 1 other
X	16406562	X_16406562_SNP [dm3] X_16512529_SNP [dm6]	G	T	1.219e^-4	0.916	INTRON para
X	7432514	X_7432514_SNP [dm3] X_7538481_SNP [dm6]	G	A	1.221e^-4	0.916	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3048608	3R_3048608_SNP [dm3] 3R_7222886_SNP [dm6]	C	A	1.226e^-4	0.916	INTERGENIC
2R	19382482	2R_19382482_DEL [dm3] 2R_23494959_DEL [dm6]	AA	A	1.227e^-4	0.916	INTERGENIC
X	9053113	X_9053113_SNP [dm3] X_9159080_SNP [dm6]	G	A	1.231e^-4	0.916	UPSTREAM Ost48 DOWNSTREAM CG9034 INTRON Dip1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19039037	3L_19039037_SNP [dm3] 3L_19045937_SNP [dm6]	G	T	1.239e^-4	0.916	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4509082	3L_4509082_SNP [dm3] 3L_4509082_SNP [dm6]	C	A	1.240e^-4	0.916	UPSTREAM NT1 INTERGENIC
3L	18130568	3L_18130568_SNP [dm3] 3L_18137468_SNP [dm6]	A	G	1.243e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18925367	2R_18925367_INS [dm3] 2R_23037844_INS [dm6]	A	ACACA	1.253e^-4	0.916	INTRON twi & 1 other
2R	17765173	2R_17765173_SNP [dm3] 2R_21877668_SNP [dm6]	G	A	1.254e^-4	0.916	INTRON Fili	TF binding site mE1_TFBS_cnc
2R	15415003	2R_15415003_SNP [dm3] 2R_19527498_SNP [dm6]	C	T	1.255e^-4	0.916	UTR_3_PRIME sm
X	14071021	X_14071021_SNP [dm3] X_14176988_SNP [dm6]	G	A	1.260e^-4	0.916	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
2L	12943583	2L_12943583_SNP [dm3] 2L_12943583_SNP [dm6]	G	T	1.260e^-4	0.916	INTERGENIC
X	16156517	X_16156517_SNP [dm3] X_16262484_SNP [dm6]	C	T	1.278e^-4	0.925	INTERGENIC
3R	14900999	3R_14900999_SNP [dm3] 3R_19075277_SNP [dm6]	T	A	1.288e^-4	0.928	INTRON cdi
3L	13145353	3L_13145353_SNP [dm3] 3L_13152253_SNP [dm6]	G	C	1.291e^-4	0.928	INTERGENIC
2L	9611148	2L_9611148_SNP [dm3] 2L_9611148_SNP [dm6]	T	C	1.303e^-4	0.933	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6560097	3L_6560097_SNP [dm3] 3L_6566997_SNP [dm6]	T	A	1.320e^-4	0.938	NON_SYNONYMOUS_CODING jv INTRON CG18769
3R	8486922	3R_8486922_SNP [dm3] 3R_12661200_SNP [dm6]	C	A	1.326e^-4	0.938	DOWNSTREAM CR45586 & 1 other INTERGENIC
2L	12802211	2L_12802211_SNP [dm3] 2L_12802211_SNP [dm6]	A	T	1.334e^-4	0.938	INTERGENIC
2L	15225178	2L_15225178_SNP [dm3] 2L_15225178_SNP [dm6]	A	T	1.343e^-4	0.938	INTERGENIC
3R	8460216	3R_8460216_SNP [dm3] 3R_12634494_SNP [dm6]	A	G	1.343e^-4	0.938	NON_SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2R	12550839	2R_12550839_SNP [dm3] 2R_16663334_SNP [dm6]	C	T	1.345e^-4	0.938	INTRON Picot
X	18666093	X_18666093_SNP [dm3] X_18772060_SNP [dm6]	C	T	1.363e^-4	0.938	INTRON CCKLR-17D3
2L	15186787	2L_15186787_SNP [dm3] 2L_15186787_SNP [dm6]	C	T	1.364e^-4	0.938	INTRON CG4168
2R	13693589	2R_13693589_SNP [dm3] 2R_17806084_SNP [dm6]	T	G	1.366e^-4	0.938	INTRON grh	TF binding site BDTNP1_TFBS_dl
3R	18476218	3R_18476218_SNP [dm3] 3R_22650496_SNP [dm6]	T	A	1.368e^-4	0.938	INTRON CG45058
3R	25816269	3R_25816269_SNP [dm3] 3R_29990547_SNP [dm6]	G	A	1.369e^-4	0.938	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
3L	12125098	3L_12125098_SNP [dm3] 3L_12131998_SNP [dm6]	A	T	1.371e^-4	0.938	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6435261	2R_6435261_DEL [dm3] 2R_10547756_DEL [dm6]	TT	T	1.379e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21089702	X_21089702_SNP [dm3] X_21218675_SNP [dm6]	T	C	1.387e^-4	0.94	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21142517	3L_21142517_SNP [dm3] 3L_21149417_SNP [dm6]	T	A	1.392e^-4	0.94	INTRON Ac78C
X	6335893	X_6335893_SNP [dm3] X_6441860_SNP [dm6]	G	T	1.400e^-4	0.94	INTRON CG42340
2R	17817980	2R_17817980_SNP [dm3] 2R_21930475_SNP [dm6]	C	T	1.409e^-4	0.94	INTRON Fili
3L	12126432	3L_12126432_SNP [dm3] 3L_12133332_SNP [dm6]	A	G	1.409e^-4	0.94	NON_SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	8522622	3R_8522622_SNP [dm3] 3R_12696900_SNP [dm6]	T	C	1.413e^-4	0.94	SYNONYMOUS_CODING NijC UTR_3_PRIME NijC UPSTREAM Past1 INTRON NijC	TF binding site mE1_TFBS_sens
X	15493094	X_15493094_SNP [dm3] X_15599061_SNP [dm6]	A	T	1.415e^-4	0.94	INTERGENIC
2R	9667964	2R_9667964_SNP [dm3] 2R_13780459_SNP [dm6]	A	T	1.427e^-4	0.94	UPSTREAM S-Lap7 INTRON Cpr50Ca
2R	19408409	2R_19408409_SNP [dm3] 2R_23520886_SNP [dm6]	C	G	1.428e^-4	0.94	SYNONYMOUS_CODING RabX1
3R	9136056	3R_9136056_SNP [dm3] 3R_13310334_SNP [dm6]	C	A	1.432e^-4	0.94	NON_SYNONYMOUS_CODING CG32473
2L	18110502	2L_18110502_SNP [dm3] 2L_18110502_SNP [dm6]	A	G	1.434e^-4	0.94	INTERGENIC
3R	25171631	3R_25171631_SNP [dm3] 3R_29345909_SNP [dm6]	C	G	1.446e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18948289	X_18948289_SNP [dm3] X_19054256_SNP [dm6]	C	T	1.474e^-4	0.96	INTERGENIC
2L	1720526	2L_1720526_SNP [dm3] 2L_1720526_SNP [dm6]	G	A	1.481e^-4	0.961	INTRON Rim2
2L	2189854	2L_2189854_SNP [dm3] 2L_2189854_SNP [dm6]	C	A	1.494e^-4	0.966	UPSTREAM CR44065 & 1 other DOWNSTREAM CG10874 INTERGENIC
X	16806626	X_16806626_SNP [dm3] X_16912593_SNP [dm6]	A	T	1.503e^-4	0.969	UPSTREAM CG4928 INTRON CR44754	TF binding site BDTNP1_TFBS_dl
2L	10294814	2L_10294814_SNP [dm3] 2L_10294814_SNP [dm6]	G	A	1.534e^-4	0.969	INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17862785	2R_17862785_SNP [dm3] 2R_21975280_SNP [dm6]	C	A	1.534e^-4	0.969	INTRON CG9304
3L	3764678	3L_3764678_SNP [dm3] 3L_3764678_SNP [dm6]	A	G	1.536e^-4	0.969	INTRON CG32264
3L	3764830	3L_3764830_SNP [dm3] 3L_3764830_SNP [dm6]	A	G	1.537e^-4	0.969	INTRON CG32264
3L	11676191	3L_11676191_SNP [dm3] 3L_11683091_SNP [dm6]	T	C	1.544e^-4	0.969	SYNONYMOUS_CODING TfIIEalpha UPSTREAM Sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8476290	3R_8476290_SNP [dm3] 3R_12650568_SNP [dm6]	G	A	1.552e^-4	0.969	INTRON Dtg	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	8994010	3L_8994010_SNP [dm3] 3L_9000910_SNP [dm6]	A	G	1.554e^-4	0.969	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da
X	16818775	X_16818775_SNP [dm3] X_16924742_SNP [dm6]	G	C	1.560e^-4	0.969	UPSTREAM CG4928 INTRON CG4928
2R	18897903	2R_18897903_SNP [dm3] 2R_23010380_SNP [dm6]	G	A	1.560e^-4	0.969	DOWNSTREAM CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15225162	2L_15225162_SNP [dm3] 2L_15225162_SNP [dm6]	T	A	1.568e^-4	0.969	INTERGENIC
2L	19083726	2L_19083726_SNP [dm3] 2L_19083726_SNP [dm6]	A	G	1.578e^-4	0.969	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18281795	X_18281795_SNP [dm3] X_18387762_SNP [dm6]	A	G	1.580e^-4	0.969	START_GAINED Tsf1 UTR_5_PRIME Tsf1 UPSTREAM Tsf1
X	7670914	X_7670914_SNP [dm3] X_7776881_SNP [dm6]	A	G	1.584e^-4	0.969	INTERGENIC
2L	7770820	2L_7770820_SNP [dm3] 2L_7770820_SNP [dm6]	C	A	1.589e^-4	0.969	INTRON CG7191
X	16806589	X_16806589_SNP [dm3] X_16912556_SNP [dm6]	T	G	1.600e^-4	0.969	UPSTREAM CG4928 INTRON CR44754
2L	15367329	2L_15367329_SNP [dm3] 2L_15367329_SNP [dm6]	G	T	1.601e^-4	0.969	INTERGENIC
X	5677756	X_5677756_SNP [dm3] X_5783723_SNP [dm6]	G	A	1.604e^-4	0.969	INTRON CG42699
3L	14581395	3L_14581395_SNP [dm3] 3L_14588295_SNP [dm6]	A	G	1.608e^-4	0.969	INTRON HGTX
2L	6097664	2L_6097664_SNP [dm3] 2L_6097664_SNP [dm6]	A	G	1.619e^-4	0.969	SYNONYMOUS_CODING CG9175	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	4314464	3R_4314464_SNP [dm3] 3R_8488742_SNP [dm6]	C	T	1.639e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9078527	2L_9078527_SNP [dm3] 2L_9078527_SNP [dm6]	C	T	1.641e^-4	0.969	DOWNSTREAM CG12439 INTERGENIC
X	4124142	X_4124142_SNP [dm3] X_4230109_SNP [dm6]	A	G	1.642e^-4	0.969	INTERGENIC
3R	8789014	3R_8789014_SNP [dm3] 3R_12963292_SNP [dm6]	T	C	1.652e^-4	0.969	UPSTREAM Cyp304a1 DOWNSTREAM Spc25 INTRON grsm
3L	9056749	3L_9056749_SNP [dm3] 3L_9063649_SNP [dm6]	A	G	1.654e^-4	0.969	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	7614180	X_7614180_SNP [dm3] X_7720147_SNP [dm6]	G	A	1.665e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16803302	3R_16803302_SNP [dm3] 3R_20977580_SNP [dm6]	A	T	1.668e^-4	0.969	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14581396	3L_14581396_SNP [dm3] 3L_14588296_SNP [dm6]	T	G	1.671e^-4	0.969	INTRON HGTX
X	16935105	X_16935105_SNP [dm3] X_17041072_SNP [dm6]	T	A	1.673e^-4	0.969	INTRON CG45002
2R	14286157	2R_14286157_SNP [dm3] 2R_18398652_SNP [dm6]	C	T	1.677e^-4	0.969	NON_SYNONYMOUS_CODING GstE1 UPSTREAM GstE2 & 1 other
3R	22618918	3R_22618918_SNP [dm3] 3R_26793196_SNP [dm6]	G	A	1.680e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18039875	2L_18039875_SNP [dm3] 2L_18039875_SNP [dm6]	A	G	1.682e^-4	0.969	INTRON rdo
3R	14354431	3R_14354431_SNP [dm3] 3R_18528709_SNP [dm6]	T	C	1.685e^-4	0.969	INTRON fru
3L	18030806	3L_18030806_SNP [dm3] 3L_18037706_SNP [dm6]	T	G	1.687e^-4	0.969	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10964683	3R_10964683_SNP [dm3] 3R_15138961_SNP [dm6]	T	A	1.689e^-4	0.969	UTR_3_PRIME CG3984 UPSTREAM CG3987 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22518824	3R_22518824_SNP [dm3] 3R_26693102_SNP [dm6]	C	T	1.693e^-4	0.969	SYNONYMOUS_CODING TwdlQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6503416	X_6503416_SNP [dm3] X_6609383_SNP [dm6]	C	T	1.712e^-4	0.969	INTRON pigs
2L	9617725	2L_9617725_SNP [dm3] 2L_9617725_SNP [dm6]	G	C	1.713e^-4	0.969	SYNONYMOUS_CODING GlcAT-S INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10628993	2R_10628993_SNP [dm3] 2R_14741488_SNP [dm6]	G	T	1.715e^-4	0.969	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
2R	6435259	2R_6435259_SNP [dm3] 2R_10547754_SNP [dm6]	C	T	1.720e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27147451	3R_27147451_SNP [dm3] 3R_31321729_SNP [dm6]	G	A	1.722e^-4	0.969	INTRON CG34347
3R	17488229	3R_17488229_SNP [dm3] 3R_21662507_SNP [dm6]	G	A	1.731e^-4	0.969	INTRON CG6353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19160192	X_19160192_DEL [dm3] X_19266159_DEL [dm6]	GCTATGG	G	1.732e^-4	0.969	DOWNSTREAM CG8010 INTRON Vav
X	9856100	X_9856100_SNP [dm3] X_9962067_SNP [dm6]	A	G	1.739e^-4	0.969	INTERGENIC
3R	26963390	3R_26963390_SNP [dm3] 3R_31137668_SNP [dm6]	T	C	1.741e^-4	0.969	INTRON Gycbeta100B
3R	4442822	3R_4442822_SNP [dm3] 3R_8617100_SNP [dm6]	G	T	1.741e^-4	0.969	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3R	9195156	3R_9195156_SNP [dm3] 3R_13369434_SNP [dm6]	A	G	1.742e^-4	0.969	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
3L	21574082	3L_21574082_SNP [dm3] 3L_21580982_SNP [dm6]	G	A	1.754e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19492050	X_19492050_SNP [dm3] X_19598017_SNP [dm6]	A	G	1.754e^-4	0.969	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	10315379	2L_10315379_SNP [dm3] 2L_10315379_SNP [dm6]	G	A	1.768e^-4	0.969	SYNONYMOUS_CODING CG4972 UPSTREAM CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	16806561	X_16806561_SNP [dm3] X_16912528_SNP [dm6]	T	A	1.774e^-4	0.969	UPSTREAM CG4928 INTRON CR44754
X	4457261	X_4457261_SNP [dm3] X_4563228_SNP [dm6]	T	C	1.776e^-4	0.969	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16809518	3R_16809518_SNP [dm3] 3R_20983796_SNP [dm6]	C	A	1.781e^-4	0.969	INTRON Calx
2L	3377961	2L_3377961_SNP [dm3] 2L_3377961_SNP [dm6]	A	T	1.789e^-4	0.969	NON_SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
3R	18456214	3R_18456214_SNP [dm3] 3R_22630492_SNP [dm6]	C	T	1.791e^-4	0.969	SYNONYMOUS_CODING loco INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8379230	2R_8379230_SNP [dm3] 2R_12491725_SNP [dm6]	G	T	1.791e^-4	0.969	UPSTREAM fdl INTRON fdl
3R	11104952	3R_11104952_SNP [dm3] 3R_15279230_SNP [dm6]	C	T	1.811e^-4	0.969	UPSTREAM l_3_neo43 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21280883	X_21280883_SNP [dm3] X_21409856_SNP [dm6]	T	C	1.812e^-4	0.969	EXON CR45003
3R	8477635	3R_8477635_SNP [dm3] 3R_12651913_SNP [dm6]	T	A	1.815e^-4	0.969	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22618911	3R_22618911_SNP [dm3] 3R_26793189_SNP [dm6]	G	A	1.817e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16535602	X_16535602_SNP [dm3] X_16641569_SNP [dm6]	T	G	1.825e^-4	0.969	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	6262284	3R_6262284_SNP [dm3] 3R_10436562_SNP [dm6]	A	G	1.827e^-4	0.969	NON_SYNONYMOUS_CODING Cyp12e1
2R	1774530	2R_1774530_SNP [dm3] 2R_5887025_SNP [dm6]	G	C	1.846e^-4	0.969	DOWNSTREAM CR44125 INTERGENIC
3R	18447747	3R_18447747_SNP [dm3] 3R_22622025_SNP [dm6]	C	T	1.857e^-4	0.969	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20216108	2R_20216108_SNP [dm3] 2R_24328585_SNP [dm6]	G	T	1.862e^-4	0.969	UPSTREAM CR44810 INTRON CR44810
2L	7454125	2L_7454125_SNP [dm3] 2L_7454125_SNP [dm6]	C	G	1.865e^-4	0.969	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
3R	3217939	3R_3217939_SNP [dm3] 3R_7392217_SNP [dm6]	G	T	1.865e^-4	0.969	UTR_3_PRIME CG42650
3R	6734706	3R_6734706_SNP [dm3] 3R_10908984_SNP [dm6]	G	T	1.881e^-4	0.969	INTERGENIC
3L	14092582	3L_14092582_SNP [dm3] 3L_14099482_SNP [dm6]	T	A	1.884e^-4	0.969	INTERGENIC
2L	20463233	2L_20463233_SNP [dm3] 2L_20463233_SNP [dm6]	A	G	1.885e^-4	0.969	SYNONYMOUS_CODING CG2493	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23141622	3R_23141622_SNP [dm3] 3R_27315900_SNP [dm6]	G	A	1.886e^-4	0.969	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	20304712	3R_20304712_SNP [dm3] 3R_24478990_SNP [dm6]	C	T	1.892e^-4	0.969	INTERGENIC
3R	20304841	3R_20304841_SNP [dm3] 3R_24479119_SNP [dm6]	C	T	1.892e^-4	0.969	INTERGENIC
2L	7313649	2L_7313649_SNP [dm3] 2L_7313649_SNP [dm6]	T	A	1.898e^-4	0.969	INTRON wg	TF binding site mE1_TFBS_cad
2L	3376410	2L_3376410_SNP [dm3] 2L_3376410_SNP [dm6]	A	G	1.903e^-4	0.969	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	583288	2L_583288_SNP [dm3] 2L_583288_SNP [dm6]	C	A	1.905e^-4	0.969	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10089127	2R_10089127_SNP [dm3] 2R_14201622_SNP [dm6]	G	A	1.906e^-4	0.969	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18720910	3L_18720910_SNP [dm3] 3L_18727810_SNP [dm6]	T	A	1.909e^-4	0.969	INTERGENIC
3L	11035514	3L_11035514_SNP [dm3] 3L_11042414_SNP [dm6]	G	A	1.915e^-4	0.969	INTRON CG43693
3L	12123214	3L_12123214_SNP [dm3] 3L_12130114_SNP [dm6]	T	C	1.917e^-4	0.969	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10558303	2L_10558303_SNP [dm3] 2L_10558303_SNP [dm6]	C	T	1.918e^-4	0.969	INTRON Trim9	TF binding site mE1_TFBS_inv
2L	1283845	2L_1283845_SNP [dm3] 2L_1283845_SNP [dm6]	C	G	1.939e^-4	0.974	INTRON robo3
X	18730160	X_18730160_SNP [dm3] X_18836127_SNP [dm6]	G	T	1.943e^-4	0.974	INTRON Pvf1
3L	15307309	3L_15307309_SNP [dm3] 3L_15314209_SNP [dm6]	T	C	1.949e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8477652	3R_8477652_SNP [dm3] 3R_12651930_SNP [dm6]	G	T	1.957e^-4	0.974	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7901757	2R_7901757_SNP [dm3] 2R_12014252_SNP [dm6]	A	T	1.958e^-4	0.974	UPSTREAM CR44306 INTRON otk
X	16588732	X_16588732_SNP [dm3] X_16694699_SNP [dm6]	G	A	1.959e^-4	0.974	UTR_5_PRIME Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5054590	3L_5054590_SNP [dm3] 3L_5054590_SNP [dm6]	C	G	1.968e^-4	0.974	INTRON Con
3L	3764640	3L_3764640_INS [dm3] 3L_3764640_INS [dm6]	A	ATTGTA	1.968e^-4	0.974	INTRON CG32264
2R	18925373	2R_18925373_SNP [dm3] 2R_23037850_SNP [dm6]	G	C	1.986e^-4	0.977	INTRON twi & 1 other
2L	3376058	2L_3376058_DEL [dm3] 2L_3376058_DEL [dm6]	ACA	A	1.993e^-4	0.977	UTR_3_PRIME CG9662 UPSTREAM CG15412 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20111193	2R_20111193_SNP [dm3] 2R_24223670_SNP [dm6]	C	T	1.996e^-4	0.977	INTRON CG30419
X	8160399	X_8160399_SNP [dm3] X_8266366_SNP [dm6]	T	C	2.003e^-4	0.977	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20819173	X_20819173_SNP [dm3] X_20948146_SNP [dm6]	T	C	2.004e^-4	0.977	INTERGENIC
2R	13954996	2R_13954996_SNP [dm3] 2R_18067491_SNP [dm6]	G	A	2.014e^-4	0.977	INTRON CG34386
3R	18441533	3R_18441533_SNP [dm3] 3R_22615811_SNP [dm6]	G	A	2.019e^-4	0.977	SYNONYMOUS_CODING EF-G2 UTR_3_PRIME EF-G2 UPSTREAM CG31161
2L	11772867	2L_11772867_SNP [dm3] 2L_11772867_SNP [dm6]	T	C	2.022e^-4	0.977	INTERGENIC
3L	10154264	3L_10154264_SNP [dm3] 3L_10161164_SNP [dm6]	T	C	2.026e^-4	0.977	INTRON dpr10
X	8160390	X_8160390_SNP [dm3] X_8266357_SNP [dm6]	A	T	2.029e^-4	0.977	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3764850	3L_3764850_SNP [dm3] 3L_3764850_SNP [dm6]	T	C	2.032e^-4	0.977	INTRON CG32264
3R	8800331	3R_8800331_SNP [dm3] 3R_12974609_SNP [dm6]	A	C	2.084e^-4	0.981	UPSTREAM CG7381 INTRON CG7381
3R	7871189	3R_7871189_SNP [dm3] 3R_12045467_SNP [dm6]	G	A	2.090e^-4	0.981	INTERGENIC
3R	3401433	3R_3401433_DEL [dm3] 3R_7575711_DEL [dm6]	AC	A	2.092e^-4	0.981	INTRON CG34127
X	21089869	X_21089869_SNP [dm3] X_21218842_SNP [dm6]	T	G	2.108e^-4	0.981	DOWNSTREAM CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
3R	15189320	3R_15189320_SNP [dm3] 3R_19363598_SNP [dm6]	C	G	2.109e^-4	0.981	INTERGENIC
2R	15288559	2R_15288559_SNP [dm3] 2R_19401054_SNP [dm6]	C	T	2.126e^-4	0.981	SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2R	15288598	2R_15288598_SNP [dm3] 2R_19401093_SNP [dm6]	C	A	2.126e^-4	0.981	NON_SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
3R	15252527	3R_15252527_SNP [dm3] 3R_19426805_SNP [dm6]	T	G	2.127e^-4	0.981	INTRON CG31221
2L	18039778	2L_18039778_SNP [dm3] 2L_18039778_SNP [dm6]	A	G	2.127e^-4	0.981	INTRON rdo
X	21089867	X_21089867_SNP [dm3] X_21218840_SNP [dm6]	C	T	2.138e^-4	0.981	DOWNSTREAM CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
3L	1200385	3L_1200385_DEL [dm3] 3L_1200385_DEL [dm6]	TG	C	2.162e^-4	0.981	UPSTREAM mwh INTERGENIC
3L	12133187	3L_12133187_SNP [dm3] 3L_12140087_SNP [dm6]	C	T	2.167e^-4	0.981	UTR_5_PRIME RhoGAP68F
3L	20537659	3L_20537659_SNP [dm3] 3L_20544559_SNP [dm6]	G	A	2.171e^-4	0.981	INTERGENIC
2L	715324	2L_715324_SNP [dm3] 2L_715324_SNP [dm6]	T	C	2.171e^-4	0.981	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20516440	3R_20516440_SNP [dm3] 3R_24690718_SNP [dm6]	T	G	2.177e^-4	0.981	INTRON slo
3R	17739691	3R_17739691_SNP [dm3] 3R_21913969_SNP [dm6]	C	T	2.197e^-4	0.981	SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
3L	12124996	3L_12124996_SNP [dm3] 3L_12131896_SNP [dm6]	A	C	2.205e^-4	0.981	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14451557	2L_14451557_SNP [dm3] 2L_14451557_SNP [dm6]	A	G	2.210e^-4	0.981	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	4439934	3R_4439934_SNP [dm3] 3R_8614212_SNP [dm6]	G	A	2.217e^-4	0.981	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	1515537	2L_1515537_DEL [dm3] 2L_1515537_DEL [dm6]	GAAGCAA	CC	2.223e^-4	0.981	INTERGENIC
3R	8526906	3R_8526906_SNP [dm3] 3R_12701184_SNP [dm6]	C	T	2.224e^-4	0.981	INTRON Past1
2L	20848502	2L_20848502_SNP [dm3] 2L_20848502_SNP [dm6]	T	A	2.224e^-4	0.981	UPSTREAM CR44307 & 1 other INTRON CG31676
3R	26605634	3R_26605634_SNP [dm3] 3R_30779912_SNP [dm6]	A	T	2.224e^-4	0.981	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
2L	18109215	2L_18109215_SNP [dm3] 2L_18109215_SNP [dm6]	T	A	2.226e^-4	0.981	INTERGENIC
2R	20474126	2R_20474126_DEL [dm3] 2R_24586603_DEL [dm6]	CC	C	2.228e^-4	0.981	INTRON pio
2L	8255578	2L_8255578_SNP [dm3] 2L_8255578_SNP [dm6]	A	T	2.248e^-4	0.981	INTRON CG8086
3R	25482169	3R_25482169_SNP [dm3] 3R_29656447_SNP [dm6]	G	A	2.252e^-4	0.981	INTRON Dop1R2
3R	15252486	3R_15252486_INS [dm3] 3R_19426764_INS [dm6]	C	CTTG	2.259e^-4	0.981	INTRON CG31221
3R	11232563	3R_11232563_SNP [dm3] 3R_15406841_SNP [dm6]	C	T	2.259e^-4	0.981	INTRON CG6125
3R	21251759	3R_21251759_SNP [dm3] 3R_25426037_SNP [dm6]	C	T	2.272e^-4	0.981	INTRON Fur1
3L	15329997	3L_15329997_SNP [dm3] 3L_15336897_SNP [dm6]	G	A	2.275e^-4	0.981	UTR_5_PRIME Toll-6 DOWNSTREAM CR43992	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	1867336	3L_1867336_SNP [dm3] 3L_1867336_SNP [dm6]	T	C	2.279e^-4	0.981	SYNONYMOUS_CODING CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8255579	2L_8255579_SNP [dm3] 2L_8255579_SNP [dm6]	A	G	2.284e^-4	0.981	INTRON CG8086
X	3027971	X_3027971_SNP [dm3] X_3133938_SNP [dm6]	A	C	2.288e^-4	0.981	UTR_3_PRIME kirre UPSTREAM N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	9000105	X_9000105_SNP [dm3] X_9106072_SNP [dm6]	G	A	2.295e^-4	0.981	UPSTREAM Arfrp1 INTRON Bx42	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	8471637	3R_8471637_SNP [dm3] 3R_12645915_SNP [dm6]	C	G	2.310e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	14451513	2L_14451513_SNP [dm3] 2L_14451513_SNP [dm6]	C	G	2.315e^-4	0.981	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24467343	3R_24467343_SNP [dm3] 3R_28641621_SNP [dm6]	A	G	2.319e^-4	0.981	UTR_3_PRIME CG14062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22412517	3R_22412517_SNP [dm3] 3R_26586795_SNP [dm6]	A	G	2.333e^-4	0.981	SYNONYMOUS_CODING scrib INTRON scrib
2L	2155283	2L_2155283_SNP [dm3] 2L_2155283_SNP [dm6]	G	A	2.344e^-4	0.981	UTR_3_PRIME AIF UPSTREAM CG15382 DOWNSTREAM AIF	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2155284	2L_2155284_SNP [dm3] 2L_2155284_SNP [dm6]	G	C	2.344e^-4	0.981	UTR_3_PRIME AIF UPSTREAM CG15382 DOWNSTREAM AIF	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4509687	3L_4509687_SNP [dm3] 3L_4509687_SNP [dm6]	C	G	2.347e^-4	0.981	INTERGENIC
3R	10967420	3R_10967420_SNP [dm3] 3R_15141698_SNP [dm6]	C	G	2.350e^-4	0.981	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi
3L	8450625	3L_8450625_SNP [dm3] 3L_8457525_SNP [dm6]	A	G	2.359e^-4	0.981	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11156349	3L_11156349_SNP [dm3] 3L_11163249_SNP [dm6]	C	T	2.370e^-4	0.981	UTR_3_PRIME CG32082 DOWNSTREAM CR43989 INTRON CG32082
2L	9618169	2L_9618169_SNP [dm3] 2L_9618169_SNP [dm6]	A	T	2.378e^-4	0.981	INTRON GlcAT-S
3L	2154690	3L_2154690_SNP [dm3] 3L_2154690_SNP [dm6]	A	C	2.387e^-4	0.981	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
2R	18924553	2R_18924553_SNP [dm3] 2R_23037030_SNP [dm6]	G	A	2.390e^-4	0.981	INTRON twi & 1 other
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	2.393e^-4	0.981	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13930052	2L_13930052_SNP [dm3] 2L_13930052_SNP [dm6]	T	C	2.399e^-4	0.981	DOWNSTREAM CG42711 INTRON Ance-3
X	13525047	X_13525047_SNP [dm3] X_13631014_SNP [dm6]	A	G	2.413e^-4	0.981	INTRON NFAT
2L	13459225	2L_13459225_SNP [dm3] 2L_13459225_SNP [dm6]	A	C	2.417e^-4	0.981	UPSTREAM CR45684 & 1 other INTRON CG42784
X	13348029	X_13348029_SNP [dm3] X_13453996_SNP [dm6]	T	A	2.431e^-4	0.981	INTRON Neto
2R	12548286	2R_12548286_SNP [dm3] 2R_16660781_SNP [dm6]	A	C	2.436e^-4	0.981	INTRON Picot
X	5247517	X_5247517_SNP [dm3] X_5353484_SNP [dm6]	C	G	2.439e^-4	0.981	INTRON SK
2R	12546961	2R_12546961_SNP [dm3] 2R_16659456_SNP [dm6]	C	A	2.440e^-4	0.981	UPSTREAM Picot INTRON Picot
2R	12547460	2R_12547460_SNP [dm3] 2R_16659955_SNP [dm6]	G	A	2.440e^-4	0.981	UPSTREAM Picot INTRON Picot
2R	12548163	2R_12548163_INS [dm3] 2R_16660658_INS [dm6]	T	TATTATAATTATAATTATAT...	2.440e^-4	0.981	INTRON Picot
2R	12548424	2R_12548424_SNP [dm3] 2R_16660919_SNP [dm6]	G	C	2.440e^-4	0.981	INTRON Picot
3L	2033264	3L_2033264_SNP [dm3] 3L_2033264_SNP [dm6]	A	C	2.440e^-4	0.981	INTERGENIC
2R	15266673	2R_15266673_SNP [dm3] 2R_19379168_SNP [dm6]	A	G	2.443e^-4	0.981	SYNONYMOUS_CODING CG10062
3L	1134698	3L_1134698_SNP [dm3] 3L_1134698_SNP [dm6]	G	A	2.452e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
2R	19359730	2R_19359730_SNP [dm3] 2R_23472207_SNP [dm6]	A	T	2.457e^-4	0.981	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	17490798	2R_17490798_SNP [dm3] 2R_21603293_SNP [dm6]	A	G	2.458e^-4	0.981	DOWNSTREAM CR45150 INTERGENIC
2L	17817383	2L_17817383_SNP [dm3] 2L_17817383_SNP [dm6]	G	A	2.473e^-4	0.981	INTRON CadN2
3R	21548711	3R_21548711_SNP [dm3] 3R_25722989_SNP [dm6]	G	T	2.479e^-4	0.981	INTRON LpR2
3R	8800336	3R_8800336_SNP [dm3] 3R_12974614_SNP [dm6]	G	T	2.481e^-4	0.981	UPSTREAM CG7381 INTRON CG7381
3L	21387269	3L_21387269_SNP [dm3] 3L_21394169_SNP [dm6]	G	C	2.481e^-4	0.981	INTRON rgn
2R	20211080	2R_20211080_SNP [dm3] 2R_24323557_SNP [dm6]	C	A	2.483e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12346478	2R_12346478_SNP [dm3] 2R_16458973_SNP [dm6]	A	G	2.484e^-4	0.981	INTERGENIC
2L	12089941	2L_12089941_SNP [dm3] 2L_12089941_SNP [dm6]	G	A	2.488e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9754853	2R_9754853_SNP [dm3] 2R_13867348_SNP [dm6]	C	A	2.499e^-4	0.981	INTRON shot
2R	11739097	2R_11739097_SNP [dm3] 2R_15851592_SNP [dm6]	T	C	2.500e^-4	0.981	INTRON tun	TF binding site BDTNP1_TFBS_dl
3R	11232523	3R_11232523_SNP [dm3] 3R_15406801_SNP [dm6]	A	T	2.509e^-4	0.981	INTRON CG6125
3L	15346767	3L_15346767_SNP [dm3] 3L_15353667_SNP [dm6]	A	C	2.524e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1280382	3L_1280382_SNP [dm3] 3L_1280382_SNP [dm6]	A	G	2.528e^-4	0.981	INTRON CG32333
3L	10159369	3L_10159369_SNP [dm3] 3L_10166269_SNP [dm6]	C	T	2.529e^-4	0.981	SYNONYMOUS_CODING CG6628 INTRON dpr10
3L	5925725	3L_5925725_SNP [dm3] 3L_5932625_SNP [dm6]	T	A	2.539e^-4	0.981	UTR_5_PRIME Rcc1 UPSTREAM Rcc1 DOWNSTREAM CG33993	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	5925732	3L_5925732_SNP [dm3] 3L_5932632_SNP [dm6]	C	T	2.539e^-4	0.981	UTR_5_PRIME Rcc1 UPSTREAM Rcc1 DOWNSTREAM CG33993	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	9628604	2L_9628604_SNP [dm3] 2L_9628604_SNP [dm6]	G	T	2.548e^-4	0.981	INTERGENIC
X	14544407	X_14544407_SNP [dm3] X_14650374_SNP [dm6]	A	G	2.550e^-4	0.981	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	18730163	X_18730163_SNP [dm3] X_18836130_SNP [dm6]	C	G	2.550e^-4	0.981	INTRON Pvf1
2R	3866919	2R_3866919_SNP [dm3] 2R_7979414_SNP [dm6]	T	G	2.565e^-4	0.981	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3319734	2L_3319734_SNP [dm3] 2L_3319734_SNP [dm6]	A	G	2.565e^-4	0.981	UPSTREAM CG8837 INTRON CG3326	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	15252488	3R_15252488_DEL [dm3] 3R_19426766_DEL [dm6]	ATTTTAAAAGTAATAA...	A	2.570e^-4	0.981	INTRON CG31221
3L	18006448	3L_18006448_SNP [dm3] 3L_18013348_SNP [dm6]	A	T	2.570e^-4	0.981	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10941742	2L_10941742_SNP [dm3] 2L_10941742_SNP [dm6]	T	A	2.571e^-4	0.981	DOWNSTREAM CR44492 INTRON dpr2
2L	1924589	2L_1924589_SNP [dm3] 2L_1924589_SNP [dm6]	T	C	2.574e^-4	0.981	INTRON CG7337
2L	3378237	2L_3378237_SNP [dm3] 2L_3378237_SNP [dm6]	C	T	2.578e^-4	0.981	SYNONYMOUS_CODING Ptpa
2R	14015181	2R_14015181_SNP [dm3] 2R_18127676_SNP [dm6]	T	C	2.578e^-4	0.981	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18625025	2L_18625025_SNP [dm3] 2L_18625025_SNP [dm6]	T	C	2.578e^-4	0.981	INTRON MESR3	TF binding site BDTNP1_TFBS_twi
X	17241603	X_17241603_SNP [dm3] X_17347570_SNP [dm6]	G	C	2.582e^-4	0.981	INTERGENIC
3R	8525705	3R_8525705_SNP [dm3] 3R_12699983_SNP [dm6]	A	C	2.582e^-4	0.981	INTRON Past1
X	4788228	X_4788228_SNP [dm3] X_4894195_SNP [dm6]	C	A	2.582e^-4	0.981	INTRON CG42594
X	4587520	X_4587520_SNP [dm3] X_4693487_SNP [dm6]	A	G	2.584e^-4	0.981	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14015180	2R_14015180_SNP [dm3] 2R_18127675_SNP [dm6]	C	G	2.592e^-4	0.981	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12548160	2R_12548160_SNP [dm3] 2R_16660655_SNP [dm6]	T	A	2.604e^-4	0.981	INTRON Picot
2L	20115092	2L_20115092_SNP [dm3] 2L_20115092_SNP [dm6]	A	C	2.605e^-4	0.981	INTERGENIC
X	19743819	X_19743819_SNP [dm3] X_19849786_SNP [dm6]	T	A	2.610e^-4	0.981	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19491911	X_19491911_SNP [dm3] X_19597878_SNP [dm6]	C	G	2.611e^-4	0.981	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	20304698	3R_20304698_SNP [dm3] 3R_24478976_SNP [dm6]	T	G	2.613e^-4	0.981	INTERGENIC
3R	18097659	3R_18097659_SNP [dm3] 3R_22271937_SNP [dm6]	G	A	2.618e^-4	0.981	INTRON SKIP
2L	4309621	2L_4309621_SNP [dm3] 2L_4309621_SNP [dm6]	C	T	2.618e^-4	0.981	INTRON tutl
2L	1311901	2L_1311901_SNP [dm3] 2L_1311901_SNP [dm6]	A	C	2.618e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	1133519	3L_1133519_SNP [dm3] 3L_1133519_SNP [dm6]	C	T	2.618e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	25953287	3R_25953287_SNP [dm3] 3R_30127565_SNP [dm6]	A	G	2.619e^-4	0.981	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
2R	13774233	2R_13774233_SNP [dm3] 2R_17886728_SNP [dm6]	G	A	2.622e^-4	0.981	DOWNSTREAM PPO1 INTRON Elk
2L	16331751	2L_16331751_SNP [dm3] 2L_16331751_SNP [dm6]	T	G	2.623e^-4	0.981	SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_hb
2L	1238411	2L_1238411_SNP [dm3] 2L_1238411_SNP [dm6]	C	A	2.633e^-4	0.981	INTERGENIC
2R	14015204	2R_14015204_SNP [dm3] 2R_18127699_SNP [dm6]	G	T	2.639e^-4	0.981	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	583064	2L_583064_SNP [dm3] 2L_583064_SNP [dm6]	A	G	2.644e^-4	0.981	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10315391	2L_10315391_SNP [dm3] 2L_10315391_SNP [dm6]	G	A	2.646e^-4	0.981	SYNONYMOUS_CODING CG4972 UPSTREAM CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	18030846	3L_18030846_SNP [dm3] 3L_18037746_SNP [dm6]	T	C	2.678e^-4	0.981	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16227354	3R_16227354_DEL [dm3] 3R_20401632_DEL [dm6]	AGCTCTA	A	2.687e^-4	0.981	INTRON Gfrl
2R	12548194	2R_12548194_SNP [dm3] 2R_16660689_SNP [dm6]	A	G	2.687e^-4	0.981	INTRON Picot
2L	15022958	2L_15022958_SNP [dm3] 2L_15022958_SNP [dm6]	G	C	2.699e^-4	0.981	INTRON GABA-B-R1
3L	22161897	3L_22161897_SNP [dm3] 3L_22168797_SNP [dm6]	A	C	2.700e^-4	0.981	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18902523	2R_18902523_SNP [dm3] 2R_23015000_SNP [dm6]	C	A	2.706e^-4	0.981	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
2R	9816953	2R_9816953_SNP [dm3] 2R_13929448_SNP [dm6]	T	A	2.710e^-4	0.981	INTRON shot
3R	13885619	3R_13885619_SNP [dm3] 3R_18059897_SNP [dm6]	G	A	2.711e^-4	0.981	INTERGENIC
2L	1269172	2L_1269172_SNP [dm3] 2L_1269172_SNP [dm6]	C	T	2.716e^-4	0.981	INTRON robo3
2R	12687292	2R_12687292_SNP [dm3] 2R_16799787_SNP [dm6]	T	A	2.723e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9625587	2L_9625587_SNP [dm3] 2L_9625587_SNP [dm6]	G	C	2.724e^-4	0.981	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9615259	2L_9615259_SNP [dm3] 2L_9615259_SNP [dm6]	G	T	2.732e^-4	0.981	INTRON Trx-2
X	19745445	X_19745445_SNP [dm3] X_19851412_SNP [dm6]	C	T	2.735e^-4	0.981	UTR_5_PRIME pico UPSTREAM Nup205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20401936	X_20401936_SNP [dm3] X_20530909_SNP [dm6]	C	A	2.738e^-4	0.981	INTERGENIC
3L	17474333	3L_17474333_SNP [dm3] 3L_17481233_SNP [dm6]	G	T	2.739e^-4	0.981	START_GAINED CG6333 UTR_5_PRIME CG6333 INTRON CG6333
2R	9482458	2R_9482458_SNP [dm3] 2R_13594953_SNP [dm6]	C	T	2.746e^-4	0.981	SYNONYMOUS_CODING CG6197	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10159398	3L_10159398_SNP [dm3] 3L_10166298_SNP [dm6]	C	A	2.747e^-4	0.981	NON_SYNONYMOUS_CODING CG6628 INTRON dpr10
3R	10965508	3R_10965508_SNP [dm3] 3R_15139786_SNP [dm6]	G	A	2.753e^-4	0.981	UPSTREAM CG3987 DOWNSTREAM CG3984 INTRON CR45600	transposable element FlyBase
X	1838818	X_1838818_SNP [dm3] X_1944785_SNP [dm6]	A	T	2.753e^-4	0.981	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19039052	3L_19039052_SNP [dm3] 3L_19045952_SNP [dm6]	C	T	2.765e^-4	0.981	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14191629	2R_14191629_SNP [dm3] 2R_18304124_SNP [dm6]	C	A	2.770e^-4	0.981	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2812525	2L_2812525_SNP [dm3] 2L_2812525_SNP [dm6]	A	C	2.790e^-4	0.981	UTR_5_PRIME CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12830255	3L_12830255_SNP [dm3] 3L_12837155_SNP [dm6]	A	G	2.791e^-4	0.981	INTRON CG10960	TF binding site mE1_TFBS_HSA
X	6334910	X_6334910_SNP [dm3] X_6440877_SNP [dm6]	A	C	2.791e^-4	0.981	INTRON CG42340
3R	10950677	3R_10950677_SNP [dm3] 3R_15124955_SNP [dm6]	A	G	2.791e^-4	0.981	INTRON CG42788
X	8770978	X_8770978_SNP [dm3] X_8876945_SNP [dm6]	C	T	2.807e^-4	0.981	UPSTREAM Moe INTRON Moe
3R	14306867	3R_14306867_SNP [dm3] 3R_18481145_SNP [dm6]	G	A	2.807e^-4	0.981	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13574830	2L_13574830_SNP [dm3] 2L_13574830_SNP [dm6]	C	G	2.813e^-4	0.981	INTRON kuz
3R	25482167	3R_25482167_SNP [dm3] 3R_29656445_SNP [dm6]	A	G	2.817e^-4	0.981	INTRON Dop1R2
X	18967750	X_18967750_DEL [dm3] X_19073717_DEL [dm6]	AAAAATATAAAATATGACTA...	GAACATATAAAATATGGCTA...	2.819e^-4	0.981	INTERGENIC
X	16158067	X_16158067_SNP [dm3] X_16264034_SNP [dm6]	C	T	2.836e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21089903	X_21089903_SNP [dm3] X_21218876_SNP [dm6]	T	A	2.841e^-4	0.981	DOWNSTREAM CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	17787278	2L_17787278_DEL [dm3] 2L_17787278_DEL [dm6]	CGTTTTCATTTC...	C	2.845e^-4	0.981	UTR_3_PRIME CadN2
2R	17862585	2R_17862585_SNP [dm3] 2R_21975080_SNP [dm6]	G	A	2.849e^-4	0.981	SYNONYMOUS_CODING CG9304
2R	11988823	2R_11988823_SNP [dm3] 2R_16101318_SNP [dm6]	A	C	2.857e^-4	0.981	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	3764800	3L_3764800_SNP [dm3] 3L_3764800_SNP [dm6]	G	T	2.860e^-4	0.981	INTRON CG32264
3R	20305948	3R_20305948_SNP [dm3] 3R_24480226_SNP [dm6]	A	C	2.877e^-4	0.981	INTERGENIC
3R	26605638	3R_26605638_SNP [dm3] 3R_30779916_SNP [dm6]	A	T	2.885e^-4	0.981	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	4477060	3R_4477060_SNP [dm3] 3R_8651338_SNP [dm6]	C	T	2.886e^-4	0.981	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17621072	X_17621072_SNP [dm3] X_17727039_SNP [dm6]	C	A	2.888e^-4	0.981	INTRON CG42684
3L	14004063	3L_14004063_SNP [dm3] 3L_14010963_SNP [dm6]	T	C	2.894e^-4	0.981	INTRON upSET	TF binding site mE1_TFBS_cad
2R	16784581	2R_16784581_SNP [dm3] 2R_20897076_SNP [dm6]	G	A	2.899e^-4	0.981	INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16784595	2R_16784595_SNP [dm3] 2R_20897090_SNP [dm6]	A	G	2.899e^-4	0.981	INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8162530	X_8162530_SNP [dm3] X_8268497_SNP [dm6]	G	T	2.907e^-4	0.981	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3698196	2L_3698196_DEL [dm3] 2L_3698196_DEL [dm6]	TCTAACTGAAT...	T	2.907e^-4	0.981	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
X	4952133	X_4952133_INS [dm3] X_5058100_INS [dm6]	T	TT	2.913e^-4	0.981	INTRON CR44833 & 1 other
3R	18704380	3R_18704380_SNP [dm3] 3R_22878658_SNP [dm6]	T	C	2.919e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19917242	2R_19917242_SNP [dm3] 2R_24029719_SNP [dm6]	G	A	2.925e^-4	0.981	SYNONYMOUS_CODING CG3163 UPSTREAM HSPC300 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	9997793	2R_9997793_INS [dm3] 2R_14110288_INS [dm6]	T	TT	2.925e^-4	0.981	INTRON Prosap
2L	12089946	2L_12089946_SNP [dm3] 2L_12089946_SNP [dm6]	T	A	2.932e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15776481	X_15776481_SNP [dm3] X_15882448_SNP [dm6]	C	T	2.936e^-4	0.981	SYNONYMOUS_CODING tay
3L	22319948	3L_22319948_INS [dm3] 3L_22326848_INS [dm6]	T	TCCGTGT	2.941e^-4	0.981	INTRON Ten-m	TF binding site mE1_TFBS_chinmo
2R	20337872	2R_20337872_SNP [dm3] 2R_24450349_SNP [dm6]	T	C	2.958e^-4	0.981	DOWNSTREAM CG4563 INTERGENIC
2L	6174585	2L_6174585_SNP [dm3] 2L_6174585_SNP [dm6]	G	T	2.960e^-4	0.981	INTERGENIC
3L	12125144	3L_12125144_SNP [dm3] 3L_12132044_SNP [dm6]	A	G	2.967e^-4	0.981	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15290558	2R_15290558_SNP [dm3] 2R_19403053_SNP [dm6]	T	C	2.971e^-4	0.981	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7834289	3L_7834289_DEL [dm3] 3L_7841189_DEL [dm6]	GT	G	2.978e^-4	0.981	INTRON Pdp1	regulatory region REDfly_CRMs
3R	10966319	3R_10966319_SNP [dm3] 3R_15140597_SNP [dm6]	T	C	2.979e^-4	0.981	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600
2L	20828369	2L_20828369_SNP [dm3] 2L_20828369_SNP [dm6]	C	A	2.981e^-4	0.981	DOWNSTREAM CG9331 INTERGENIC
3R	7879020	3R_7879020_SNP [dm3] 3R_12053298_SNP [dm6]	G	T	3.003e^-4	0.981	INTERGENIC
X	19743793	X_19743793_SNP [dm3] X_19849760_SNP [dm6]	T	A	3.005e^-4	0.981	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10950814	3R_10950814_SNP [dm3] 3R_15125092_SNP [dm6]	A	T	3.015e^-4	0.981	INTRON CG42788
2R	9076017	2R_9076017_SNP [dm3] 2R_13188512_SNP [dm6]	C	T	3.019e^-4	0.981	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16092924	2R_16092924_SNP [dm3] 2R_20205419_SNP [dm6]	G	T	3.038e^-4	0.981	INTERGENIC
X	20482732	X_20482732_SNP [dm3] X_20611705_SNP [dm6]	T	A	3.041e^-4	0.981	INTRON RunxA
X	8585742	X_8585742_SNP [dm3] X_8691709_SNP [dm6]	G	A	3.046e^-4	0.981	UTR_3_PRIME Ogg1 DOWNSTREAM CG11294
2R	20203543	2R_20203543_SNP [dm3] 2R_24316020_SNP [dm6]	A	G	3.054e^-4	0.981	INTERGENIC
X	16934902	X_16934902_SNP [dm3] X_17040869_SNP [dm6]	A	G	3.058e^-4	0.981	INTRON CG45002
2R	12546895	2R_12546895_SNP [dm3] 2R_16659390_SNP [dm6]	T	C	3.061e^-4	0.981	UPSTREAM Picot INTRON Picot
2L	3383073	2L_3383073_SNP [dm3] 2L_3383073_SNP [dm6]	C	T	3.062e^-4	0.981	INTERGENIC
2R	15289424	2R_15289424_SNP [dm3] 2R_19401919_SNP [dm6]	G	A	3.063e^-4	0.981	SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad
3R	11308724	3R_11308724_SNP [dm3] 3R_15483002_SNP [dm6]	T	C	3.065e^-4	0.981	UPSTREAM Rh6 DOWNSTREAM CG14870 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16224045	3R_16224045_SNP [dm3] 3R_20398323_SNP [dm6]	A	T	3.066e^-4	0.981	INTRON Gfrl
3L	24160009	3L_24160009_SNP [dm3] 3L_24166909_SNP [dm6]	A	G	3.069e^-4	0.981	INTRON Snap25
3R	8551069	3R_8551069_SNP [dm3] 3R_12725347_SNP [dm6]	A	T	3.071e^-4	0.981	INTERGENIC
2L	3246830	2L_3246830_DEL [dm3] 2L_3246830_DEL [dm6]	CTGCC	C	3.081e^-4	0.981	INTERGENIC
X	19242652	X_19242652_SNP [dm3] X_19348619_SNP [dm6]	C	A	3.082e^-4	0.981	UPSTREAM nAChRalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	943188	2L_943188_SNP [dm3] 2L_943188_SNP [dm6]	A	G	3.095e^-4	0.981	INTRON CG4341
3L	10017492	3L_10017492_SNP [dm3] 3L_10024392_SNP [dm6]	A	C	3.099e^-4	0.981	INTRON dpr6
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	3.100e^-4	0.981	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17862746	2R_17862746_SNP [dm3] 2R_21975241_SNP [dm6]	G	A	3.116e^-4	0.981	INTRON CG9304
X	19663815	X_19663815_SNP [dm3] X_19769782_SNP [dm6]	T	C	3.124e^-4	0.981	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	11338646	3R_11338646_SNP [dm3] 3R_15512924_SNP [dm6]	C	A	3.127e^-4	0.981	INTERGENIC
3R	5335044	3R_5335044_SNP [dm3] 3R_9509322_SNP [dm6]	C	G	3.131e^-4	0.981	INTRON rump	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1337066	3R_1337066_SNP [dm3] 3R_5511344_SNP [dm6]	T	G	3.142e^-4	0.981	INTRON Nmdar1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17490799	2R_17490799_SNP [dm3] 2R_21603294_SNP [dm6]	C	A	3.159e^-4	0.981	DOWNSTREAM CR45150 INTERGENIC
2R	20219202	2R_20219202_SNP [dm3] 2R_24331679_SNP [dm6]	C	A	3.161e^-4	0.981	UTR_3_PRIME slbo
2L	9623113	2L_9623113_SNP [dm3] 2L_9623113_SNP [dm6]	G	T	3.171e^-4	0.981	DOWNSTREAM GlcAT-S INTERGENIC
X	8936019	X_8936019_SNP [dm3] X_9041986_SNP [dm6]	G	T	3.184e^-4	0.981	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1996592	2L_1996592_SNP [dm3] 2L_1996592_SNP [dm6]	C	G	3.186e^-4	0.981	DOWNSTREAM CG33543 INTERGENIC
2L	9626467	2L_9626467_SNP [dm3] 2L_9626467_SNP [dm6]	T	A	3.200e^-4	0.981	INTERGENIC
2R	19361131	2R_19361131_SNP [dm3] 2R_23473608_SNP [dm6]	G	A	3.200e^-4	0.981	UTR_5_PRIME Or59c INTRON CG43795
3R	8488996	3R_8488996_SNP [dm3] 3R_12663274_SNP [dm6]	T	C	3.201e^-4	0.981	UPSTREAM CG14395 INTRON CG14395
3R	18912041	3R_18912041_SNP [dm3] 3R_23086319_SNP [dm6]	T	G	3.210e^-4	0.981	INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13459247	2L_13459247_SNP [dm3] 2L_13459247_SNP [dm6]	A	G	3.216e^-4	0.981	UPSTREAM CR45684 & 1 other INTRON CG42784
2R	10860569	2R_10860569_SNP [dm3] 2R_14973064_SNP [dm6]	T	A	3.220e^-4	0.981	INTRON ckn
2L	19880435	2L_19880435_SNP [dm3] 2L_19880435_SNP [dm6]	T	C	3.220e^-4	0.981	INTRON sick
3L	11249075	3L_11249075_SNP [dm3] 3L_11255975_SNP [dm6]	A	C	3.223e^-4	0.981	UTR_3_PRIME scyl DOWNSTREAM scyl
3R	10964677	3R_10964677_SNP [dm3] 3R_15138955_SNP [dm6]	T	G	3.228e^-4	0.981	UTR_3_PRIME CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26763626	3R_26763626_SNP [dm3] 3R_30937904_SNP [dm6]	G	T	3.249e^-4	0.981	UPSTREAM CG15550 INTERGENIC
2L	18736208	2L_18736208_SNP [dm3] 2L_18736208_SNP [dm6]	G	A	3.252e^-4	0.981	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13791626	3R_13791626_SNP [dm3] 3R_17965904_SNP [dm6]	C	T	3.276e^-4	0.981	INTRON cpo
3L	7883391	3L_7883391_SNP [dm3] 3L_7890291_SNP [dm6]	A	G	3.277e^-4	0.981	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21396462	3L_21396462_DEL [dm3] 3L_21403362_DEL [dm6]	GA	G	3.280e^-4	0.981	INTRON rgn
3R	24156415	3R_24156415_SNP [dm3] 3R_28330693_SNP [dm6]	C	A	3.284e^-4	0.981	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20401923	X_20401923_SNP [dm3] X_20530896_SNP [dm6]	C	A	3.295e^-4	0.981	INTERGENIC
2L	9083080	2L_9083080_SNP [dm3] 2L_9083080_SNP [dm6]	T	A	3.315e^-4	0.981	INTERGENIC
2L	968757	2L_968757_SNP [dm3] 2L_968757_SNP [dm6]	A	T	3.322e^-4	0.981	INTERGENIC
2R	9352282	2R_9352282_SNP [dm3] 2R_13464777_SNP [dm6]	T	G	3.329e^-4	0.981	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8457393	2R_8457393_SNP [dm3] 2R_12569888_SNP [dm6]	G	A	3.330e^-4	0.981	UPSTREAM stil & 1 other DOWNSTREAM Cyp301a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	3.336e^-4	0.981	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
X	16290951	X_16290951_SNP [dm3] X_16396918_SNP [dm6]	T	C	3.337e^-4	0.981	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	18209212	X_18209212_SNP [dm3] X_18315179_SNP [dm6]	G	A	3.342e^-4	0.981	SYNONYMOUS_CODING CG6023 UTR_5_PRIME CG6023	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	16424311	3R_16424311_SNP [dm3] 3R_20598589_SNP [dm6]	C	T	3.346e^-4	0.981	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21142895	3L_21142895_SNP [dm3] 3L_21149795_SNP [dm6]	A	G	3.349e^-4	0.981	INTRON Ac78C
2L	12896055	2L_12896055_SNP [dm3] 2L_12896055_SNP [dm6]	C	T	3.351e^-4	0.981	INTERGENIC
2L	9078577	2L_9078577_INS [dm3] 2L_9078577_INS [dm6]	A	AA	3.360e^-4	0.981	DOWNSTREAM CG12439 INTERGENIC
3R	8488333	3R_8488333_SNP [dm3] 3R_12662611_SNP [dm6]	A	C	3.371e^-4	0.981	UPSTREAM CG14395 & 1 other INTERGENIC
3L	4629188	3L_4629188_SNP [dm3] 3L_4629188_SNP [dm6]	T	C	3.375e^-4	0.981	UTR_3_PRIME Rpd3 DOWNSTREAM axo
2L	3375192	2L_3375192_SNP [dm3] 2L_3375192_SNP [dm6]	G	A	3.381e^-4	0.981	SYNONYMOUS_CODING CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	12967196	3L_12967196_INS [dm3] 3L_12974096_INS [dm6]	C	CTGTATCC	3.384e^-4	0.981	DOWNSTREAM CG10749 INTERGENIC
2R	6435291	2R_6435291_SNP [dm3] 2R_10547786_SNP [dm6]	A	C	3.385e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14108969	2L_14108969_SNP [dm3] 2L_14108969_SNP [dm6]	C	T	3.399e^-4	0.981	NON_SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
2R	15284395	2R_15284395_SNP [dm3] 2R_19396890_SNP [dm6]	A	C	3.402e^-4	0.981	UPSTREAM SdhA & 1 other DOWNSTREAM hts INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7433879	X_7433879_SNP [dm3] X_7539846_SNP [dm6]	A	C	3.403e^-4	0.981	INTRON CG32719
2R	8757217	2R_8757217_SNP [dm3] 2R_12869712_SNP [dm6]	A	G	3.405e^-4	0.981	UPSTREAM bic & 1 other EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	26963410	3R_26963410_SNP [dm3] 3R_31137688_SNP [dm6]	C	T	3.407e^-4	0.981	INTRON Gycbeta100B
2R	12858182	2R_12858182_SNP [dm3] 2R_16970677_SNP [dm6]	A	C	3.412e^-4	0.981	EXON CR44377
3R	934919	3R_934919_SNP [dm3] 3R_5109197_SNP [dm6]	C	A	3.413e^-4	0.981	UPSTREAM CG43131 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8525744	3R_8525744_SNP [dm3] 3R_12700022_SNP [dm6]	C	T	3.414e^-4	0.981	INTRON Past1
3R	26610565	3R_26610565_SNP [dm3] 3R_30784843_SNP [dm6]	G	T	3.431e^-4	0.981	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20480846	X_20480846_INS [dm3] X_20609819_INS [dm6]	T	TGTAT	3.434e^-4	0.981	INTRON RunxA
3L	7780021	3L_7780021_SNP [dm3] 3L_7786921_SNP [dm6]	A	G	3.442e^-4	0.981	INTRON CG32369
X	8356642	X_8356642_SNP [dm3] X_8462609_SNP [dm6]	G	C	3.448e^-4	0.981	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17256701	X_17256701_SNP [dm3] X_17362668_SNP [dm6]	A	T	3.465e^-4	0.981	INTERGENIC
2R	8557413	2R_8557413_SNP [dm3] 2R_12669908_SNP [dm6]	A	G	3.469e^-4	0.981	UTR_5_PRIME nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	17172776	2R_17172776_SNP [dm3] 2R_21285271_SNP [dm6]	T	C	3.481e^-4	0.981	UTR_3_PRIME MFS16 & 1 other
2R	18868149	2R_18868149_SNP [dm3] 2R_22980626_SNP [dm6]	A	G	3.498e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10209272	2R_10209272_SNP [dm3] 2R_14321767_SNP [dm6]	T	A	3.502e^-4	0.981	INTRON Shroom
X	8770992	X_8770992_SNP [dm3] X_8876959_SNP [dm6]	G	A	3.504e^-4	0.981	UPSTREAM Moe INTRON Moe
2R	19359259	2R_19359259_SNP [dm3] 2R_23471736_SNP [dm6]	C	A	3.504e^-4	0.981	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2L	16554523	2L_16554523_SNP [dm3] 2L_16554523_SNP [dm6]	G	T	3.513e^-4	0.981	INTRON CG42389
3R	8488327	3R_8488327_SNP [dm3] 3R_12662605_SNP [dm6]	G	C	3.513e^-4	0.981	UPSTREAM CG14395 & 1 other INTERGENIC
3R	8800391	3R_8800391_SNP [dm3] 3R_12974669_SNP [dm6]	T	C	3.516e^-4	0.981	UPSTREAM CG7381 INTRON CG7381
3R	26605682	3R_26605682_DEL [dm3] 3R_30779960_DEL [dm6]	GA	G	3.527e^-4	0.981	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
X	13524894	X_13524894_DEL [dm3] X_13630861_DEL [dm6]	CC	C	3.532e^-4	0.981	INTRON NFAT
3L	9650634	3L_9650634_SNP [dm3] 3L_9657534_SNP [dm6]	T	A	3.532e^-4	0.981	INTRON fry & 1 other
2L	13118717	2L_13118717_SNP [dm3] 2L_13118717_SNP [dm6]	A	T	3.542e^-4	0.981	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	15381425	2L_15381425_SNP [dm3] 2L_15381425_SNP [dm6]	A	G	3.549e^-4	0.981	INTERGENIC
2L	9718983	2L_9718983_SNP [dm3] 2L_9718983_SNP [dm6]	G	T	3.550e^-4	0.981	INTRON Nckx30C
X	9180688	X_9180688_SNP [dm3] X_9286655_SNP [dm6]	C	T	3.551e^-4	0.981	SYNONYMOUS_CODING lz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3504472	2L_3504472_SNP [dm3] 2L_3504472_SNP [dm6]	T	G	3.576e^-4	0.981	UTR_5_PRIME tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6760777	3L_6760777_SNP [dm3] 3L_6767677_SNP [dm6]	T	C	3.577e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	18578962	3R_18578962_SNP [dm3] 3R_22753240_SNP [dm6]	T	A	3.577e^-4	0.981	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8800349	3R_8800349_SNP [dm3] 3R_12974627_SNP [dm6]	A	G	3.580e^-4	0.981	UPSTREAM CG7381 INTRON CG7381
3L	1277916	3L_1277916_SNP [dm3] 3L_1277916_SNP [dm6]	C	T	3.586e^-4	0.981	INTRON CG32333
3L	14248500	3L_14248500_SNP [dm3] 3L_14255400_SNP [dm6]	G	T	3.590e^-4	0.981	INTERGENIC
3L	22194830	3L_22194830_SNP [dm3] 3L_22201730_SNP [dm6]	A	C	3.592e^-4	0.981	INTRON olf413
2L	1469841	2L_1469841_SNP [dm3] 2L_1469841_SNP [dm6]	C	T	3.596e^-4	0.981	INTERGENIC
2L	3880869	2L_3880869_SNP [dm3] 2L_3880869_SNP [dm6]	C	A	3.608e^-4	0.981	UPSTREAM capu INTRON capu
2L	18462678	2L_18462678_SNP [dm3] 2L_18462678_SNP [dm6]	C	T	3.622e^-4	0.981	INTRON let-7-C	TF binding site mE1_TFBS_kn
3R	24774504	3R_24774504_SNP [dm3] 3R_28948782_SNP [dm6]	C	G	3.627e^-4	0.981	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11037609	3L_11037609_SNP [dm3] 3L_11044509_SNP [dm6]	A	G	3.635e^-4	0.981	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	1277241	2L_1277241_SNP [dm3] 2L_1277241_SNP [dm6]	T	G	3.641e^-4	0.981	INTRON robo3
3R	10965779	3R_10965779_SNP [dm3] 3R_15140057_SNP [dm6]	C	T	3.644e^-4	0.981	NON_SYNONYMOUS_CODING CG3987 EXON CR45600
2R	17862756	2R_17862756_DEL [dm3] 2R_21975251_DEL [dm6]	CGAAC	C	3.656e^-4	0.981	INTRON CG9304
3L	8905005	3L_8905005_SNP [dm3] 3L_8911905_SNP [dm6]	A	G	3.661e^-4	0.981	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UPSTREAM Tsp66E
3R	11308031	3R_11308031_SNP [dm3] 3R_15482309_SNP [dm6]	C	A	3.666e^-4	0.981	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	TF binding site mE1_TFBS_chinmo
3L	21142944	3L_21142944_SNP [dm3] 3L_21149844_SNP [dm6]	G	A	3.675e^-4	0.981	INTRON Ac78C
2R	12547397	2R_12547397_SNP [dm3] 2R_16659892_SNP [dm6]	A	G	3.675e^-4	0.981	UPSTREAM Picot INTRON Picot
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	3.684e^-4	0.981	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
3L	6559997	3L_6559997_SNP [dm3] 3L_6566897_SNP [dm6]	G	A	3.692e^-4	0.981	SYNONYMOUS_CODING jv INTRON CG18769
2R	14656009	2R_14656009_SNP [dm3] 2R_18768504_SNP [dm6]	G	A	3.707e^-4	0.981	SYNONYMOUS_CODING Mctp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8641251	3L_8641251_SNP [dm3] 3L_8648151_SNP [dm6]	C	T	3.707e^-4	0.981	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20217082	2R_20217082_SNP [dm3] 2R_24329559_SNP [dm6]	T	A	3.708e^-4	0.981	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	25953899	3R_25953899_SNP [dm3] 3R_30128177_SNP [dm6]	C	T	3.718e^-4	0.981	SYNONYMOUS_CODING Ppi1 UTR_5_PRIME Ppi1	TF binding site mE1_TFBS_chinmo
X	16156516	X_16156516_SNP [dm3] X_16262483_SNP [dm6]	C	G	3.718e^-4	0.981	INTERGENIC
3R	23268406	3R_23268406_SNP [dm3] 3R_27442684_SNP [dm6]	C	T	3.721e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3871672	3L_3871672_SNP [dm3] 3L_3871672_SNP [dm6]	A	G	3.722e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1016573	3L_1016573_SNP [dm3] 3L_1016573_SNP [dm6]	C	T	3.724e^-4	0.981	INTRON trio
2L	4262489	2L_4262489_SNP [dm3] 2L_4262489_SNP [dm6]	T	A	3.725e^-4	0.981	INTERGENIC
3L	3764661	3L_3764661_SNP [dm3] 3L_3764661_SNP [dm6]	A	T	3.737e^-4	0.981	INTRON CG32264
3L	13037076	3L_13037076_SNP [dm3] 3L_13043976_SNP [dm6]	G	T	3.763e^-4	0.981	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6494571	3L_6494571_SNP [dm3] 3L_6501471_SNP [dm6]	C	T	3.771e^-4	0.981	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	18451565	3R_18451565_DEL [dm3] 3R_22625843_DEL [dm6]	ATCGT	A	3.772e^-4	0.981	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	14451538	2L_14451538_SNP [dm3] 2L_14451538_SNP [dm6]	C	T	3.773e^-4	0.981	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	21090028	X_21090028_SNP [dm3] X_21219001_SNP [dm6]	G	T	3.783e^-4	0.981	DOWNSTREAM CG32523 INTRON CG32521
3R	5334989	3R_5334989_INS [dm3] 3R_9509267_INS [dm6]	A	ATCAAACTAACT...	3.786e^-4	0.981	INTRON rump	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17434917	2R_17434917_INS [dm3] 2R_21547412_INS [dm6]	T	TC	3.790e^-4	0.981	UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3264328	2L_3264328_SNP [dm3] 2L_3264328_SNP [dm6]	G	A	3.794e^-4	0.981	EXON CR45706	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1011838	3L_1011838_SNP [dm3] 3L_1011838_SNP [dm6]	G	T	3.795e^-4	0.981	INTRON trio
2R	19361143	2R_19361143_SNP [dm3] 2R_23473620_SNP [dm6]	A	T	3.801e^-4	0.981	UTR_5_PRIME Or59c INTRON CG43795
3R	18704372	3R_18704372_SNP [dm3] 3R_22878650_SNP [dm6]	T	C	3.807e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9245999	3L_9245999_SNP [dm3] 3L_9252899_SNP [dm6]	G	A	3.807e^-4	0.981	INTRON GluRIB
3L	8905084	3L_8905084_SNP [dm3] 3L_8911984_SNP [dm6]	G	A	3.816e^-4	0.981	NON_SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UPSTREAM Tsp66E
3L	3003188	3L_3003188_SNP [dm3] 3L_3003188_SNP [dm6]	G	T	3.825e^-4	0.981	UPSTREAM FMRFaR INTRON FMRFaR
2L	10111373	2L_10111373_SNP [dm3] 2L_10111373_SNP [dm6]	C	G	3.825e^-4	0.981	INTRON CG44153 & 1 other
3R	21548919	3R_21548919_SNP [dm3] 3R_25723197_SNP [dm6]	T	A	3.830e^-4	0.981	INTRON LpR2
2R	9754591	2R_9754591_SNP [dm3] 2R_13867086_SNP [dm6]	A	T	3.834e^-4	0.981	INTRON shot
3R	21735867	3R_21735867_SNP [dm3] 3R_25910145_SNP [dm6]	C	T	3.835e^-4	0.981	SYNONYMOUS_CODING CG42235
X	8938267	X_8938267_SNP [dm3] X_9044234_SNP [dm6]	T	C	3.863e^-4	0.981	INTRON CR43836 & 1 other
2L	870873	2L_870873_SNP [dm3] 2L_870873_SNP [dm6]	A	G	3.874e^-4	0.981	START_GAINED PNUTS UTR_5_PRIME PNUTS UPSTREAM PNUTS INTRON PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9438662	3L_9438662_SNP [dm3] 3L_9445562_SNP [dm6]	C	A	3.881e^-4	0.981	INTRON CG33926	transposable element FlyBase
3L	17997725	3L_17997725_SNP [dm3] 3L_18004625_SNP [dm6]	T	G	3.884e^-4	0.981	INTRON Eip75B	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	3376844	2L_3376844_SNP [dm3] 2L_3376844_SNP [dm6]	A	C	3.884e^-4	0.981	UPSTREAM Ptpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12449561	3L_12449561_SNP [dm3] 3L_12456461_SNP [dm6]	A	G	3.889e^-4	0.981	INTERGENIC
3L	1021010	3L_1021010_SNP [dm3] 3L_1021010_SNP [dm6]	G	A	3.893e^-4	0.981	INTRON trio
2R	9754905	2R_9754905_SNP [dm3] 2R_13867400_SNP [dm6]	A	G	3.894e^-4	0.981	INTRON shot
3L	7883836	3L_7883836_SNP [dm3] 3L_7890736_SNP [dm6]	G	A	3.898e^-4	0.981	INTRON CG32365	TF binding site mE1_TFBS_HSA
3R	10971461	3R_10971461_SNP [dm3] 3R_15145739_SNP [dm6]	C	A	3.898e^-4	0.981	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17566396	2R_17566396_SNP [dm3] 2R_21678891_SNP [dm6]	A	T	3.900e^-4	0.981	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15674369	2R_15674369_SNP [dm3] 2R_19786864_SNP [dm6]	A	C	3.905e^-4	0.981	EXON CR45231	regulatory region REDfly_CRMs
2R	19361127	2R_19361127_SNP [dm3] 2R_23473604_SNP [dm6]	C	T	3.911e^-4	0.981	UTR_5_PRIME Or59c INTRON CG43795
3L	8904920	3L_8904920_DEL [dm3] 3L_8911820_DEL [dm6]	ATGGAA	A	3.922e^-4	0.981	UPSTREAM Tsp66E INTRON mfr
2L	6004197	2L_6004197_SNP [dm3] 2L_6004197_SNP [dm6]	G	A	3.924e^-4	0.981	SPLICE_SITE_DONOR CR43866 SYNONYMOUS_CODING Gal DOWNSTREAM Tsp26A INTRON CR43866	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2636664	2L_2636664_SNP [dm3] 2L_2636664_SNP [dm6]	G	A	3.925e^-4	0.981	INTERGENIC
2L	15381092	2L_15381092_SNP [dm3] 2L_15381092_SNP [dm6]	G	T	3.933e^-4	0.981	INTERGENIC
3L	1707754	3L_1707754_SNP [dm3] 3L_1707754_SNP [dm6]	A	T	3.936e^-4	0.981	INTRON CG7991
3L	7755799	3L_7755799_SNP [dm3] 3L_7762699_SNP [dm6]	C	A	3.940e^-4	0.981	SYNONYMOUS_CODING Hn DOWNSTREAM Clk
2R	20219712	2R_20219712_SNP [dm3] 2R_24332189_SNP [dm6]	C	A	3.940e^-4	0.981	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14660592	X_14660592_SNP [dm3] X_14766559_SNP [dm6]	C	A	3.946e^-4	0.981	UPSTREAM CG15890 INTERGENIC	transposable element FlyBase
3R	24761294	3R_24761294_SNP [dm3] 3R_28935572_SNP [dm6]	C	G	3.947e^-4	0.981	INTRON CG14521
2R	16091082	2R_16091082_SNP [dm3] 2R_20203577_SNP [dm6]	T	G	3.953e^-4	0.981	INTERGENIC
3L	12125156	3L_12125156_SNP [dm3] 3L_12132056_SNP [dm6]	C	A	3.955e^-4	0.981	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12943632	2L_12943632_SNP [dm3] 2L_12943632_SNP [dm6]	T	A	3.957e^-4	0.981	INTERGENIC
3R	4092981	3R_4092981_SNP [dm3] 3R_8267259_SNP [dm6]	T	G	3.958e^-4	0.981	DOWNSTREAM CG9630 INTRON Mcm2	TF binding site mE1_TFBS_sens
2L	8253086	2L_8253086_SNP [dm3] 2L_8253086_SNP [dm6]	A	T	3.965e^-4	0.981	UPSTREAM CG8086 INTRON CG8086
X	8712475	X_8712475_SNP [dm3] X_8818442_SNP [dm6]	G	A	3.967e^-4	0.981	INTERGENIC
3L	17255667	3L_17255667_SNP [dm3] 3L_17262567_SNP [dm6]	C	A	3.973e^-4	0.981	INTRON CR43870
X	19491905	X_19491905_SNP [dm3] X_19597872_SNP [dm6]	A	C	3.983e^-4	0.981	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	11338558	3R_11338558_SNP [dm3] 3R_15512836_SNP [dm6]	G	A	3.986e^-4	0.981	INTERGENIC
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	3.986e^-4	0.981	INTERGENIC
3R	22895123	3R_22895123_SNP [dm3] 3R_27069401_SNP [dm6]	C	G	3.988e^-4	0.981	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl
X	19435645	X_19435645_SNP [dm3] X_19541612_SNP [dm6]	T	A	3.989e^-4	0.981	INTRON CG32532
3R	21550978	3R_21550978_SNP [dm3] 3R_25725256_SNP [dm6]	A	G	3.989e^-4	0.981	INTRON LpR2
3R	20924771	3R_20924771_SNP [dm3] 3R_25099049_SNP [dm6]	C	T	4.021e^-4	0.981	INTRON CG33095 & 1 other
3R	10873655	3R_10873655_SNP [dm3] 3R_15047933_SNP [dm6]	G	A	4.021e^-4	0.981	INTERGENIC
3R	18781700	3R_18781700_SNP [dm3] 3R_22955978_SNP [dm6]	T	G	4.027e^-4	0.981	INTRON klg
X	20690020	X_20690020_SNP [dm3] X_20818993_SNP [dm6]	G	A	4.033e^-4	0.981	INTRON shakB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7022357	2L_7022357_SNP [dm3] 2L_7022357_SNP [dm6]	T	C	4.046e^-4	0.981	UTR_3_PRIME Pcp INTRON ade3
3R	18704341	3R_18704341_SNP [dm3] 3R_22878619_SNP [dm6]	T	C	4.048e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6354754	3L_6354754_SNP [dm3] 3L_6361654_SNP [dm6]	A	G	4.051e^-4	0.981	INTERGENIC
2R	19361080	2R_19361080_SNP [dm3] 2R_23473557_SNP [dm6]	T	C	4.052e^-4	0.981	NON_SYNONYMOUS_CODING Or59c INTRON CG43795
3R	10503001	3R_10503001_SNP [dm3] 3R_14677279_SNP [dm6]	G	T	4.057e^-4	0.981	INTRON Meltrin
3R	3966029	3R_3966029_SNP [dm3] 3R_8140307_SNP [dm6]	A	G	4.057e^-4	0.981	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7316665	X_7316665_SNP [dm3] X_7422632_SNP [dm6]	G	A	4.060e^-4	0.981	DOWNSTREAM CG9657 INTERGENIC
2L	3929041	2L_3929041_SNP [dm3] 2L_3929041_SNP [dm6]	G	A	4.060e^-4	0.981	INTRON fred
3L	1275453	3L_1275453_SNP [dm3] 3L_1275453_SNP [dm6]	G	A	4.075e^-4	0.981	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC
3R	10950714	3R_10950714_SNP [dm3] 3R_15124992_SNP [dm6]	A	G	4.076e^-4	0.981	INTRON CG42788
2L	843478	2L_843478_SNP [dm3] 2L_843478_SNP [dm6]	G	A	4.089e^-4	0.981	UPSTREAM drongo INTRON drongo
3L	14004888	3L_14004888_SNP [dm3] 3L_14011788_SNP [dm6]	C	T	4.095e^-4	0.981	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	4.097e^-4	0.981	INTERGENIC
3L	21252333	3L_21252333_SNP [dm3] 3L_21259233_SNP [dm6]	A	G	4.099e^-4	0.981	DOWNSTREAM CG43218 INTRON Eip78C
2L	9078579	2L_9078579_SNP [dm3] 2L_9078579_SNP [dm6]	T	C	4.102e^-4	0.981	DOWNSTREAM CG12439 INTERGENIC
X	7756461	X_7756461_SNP [dm3] X_7862428_SNP [dm6]	T	A	4.105e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18781677	3R_18781677_SNP [dm3] 3R_22955955_SNP [dm6]	C	A	4.114e^-4	0.981	INTRON klg
3L	19000284	3L_19000284_SNP [dm3] 3L_19007184_SNP [dm6]	G	C	4.115e^-4	0.981	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8489101	3R_8489101_SNP [dm3] 3R_12663379_SNP [dm6]	A	T	4.116e^-4	0.981	UPSTREAM CG14395 INTRON CG14395
X	6298818	X_6298818_SNP [dm3] X_6404785_SNP [dm6]	T	G	4.122e^-4	0.981	INTERGENIC
2L	9630168	2L_9630168_SNP [dm3] 2L_9630168_SNP [dm6]	C	T	4.122e^-4	0.981	INTERGENIC
3L	18140585	3L_18140585_SNP [dm3] 3L_18147485_SNP [dm6]	T	G	4.126e^-4	0.981	INTERGENIC
X	7656015	X_7656015_DEL [dm3] X_7761982_DEL [dm6]	ATGTA	A	4.143e^-4	0.981	INTERGENIC
3R	22199358	3R_22199358_SNP [dm3] 3R_26373636_SNP [dm6]	T	C	4.146e^-4	0.981	INTERGENIC
3R	15013395	3R_15013395_SNP [dm3] 3R_19187673_SNP [dm6]	A	G	4.148e^-4	0.981	INTRON CG31475
3R	16803208	3R_16803208_SNP [dm3] 3R_20977486_SNP [dm6]	G	A	4.149e^-4	0.981	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12853593	3L_12853593_SNP [dm3] 3L_12860493_SNP [dm6]	C	T	4.150e^-4	0.981	NON_SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3L	13037138	3L_13037138_SNP [dm3] 3L_13044038_SNP [dm6]	C	G	4.152e^-4	0.981	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10948578	3R_10948578_SNP [dm3] 3R_15122856_SNP [dm6]	A	G	4.155e^-4	0.981	INTRON CG42788
X	19743754	X_19743754_SNP [dm3] X_19849721_SNP [dm6]	A	C	4.167e^-4	0.981	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27115805	3R_27115805_SNP [dm3] 3R_31290083_SNP [dm6]	C	T	4.169e^-4	0.981	INTERGENIC
X	18419209	X_18419209_SNP [dm3] X_18525176_SNP [dm6]	T	C	4.177e^-4	0.981	INTRON Bx
3L	18727670	3L_18727670_SNP [dm3] 3L_18734570_SNP [dm6]	G	C	4.178e^-4	0.981	INTERGENIC
2R	12849181	2R_12849181_SNP [dm3] 2R_16961676_SNP [dm6]	T	A	4.182e^-4	0.981	INTERGENIC
3L	7779969	3L_7779969_SNP [dm3] 3L_7786869_SNP [dm6]	T	G	4.182e^-4	0.981	INTRON CG32369
2L	13902445	2L_13902445_SNP [dm3] 2L_13902445_SNP [dm6]	T	A	4.183e^-4	0.981	SYNONYMOUS_CODING Smg5
3L	12538816	3L_12538816_SNP [dm3] 3L_12545716_SNP [dm6]	T	C	4.194e^-4	0.981	INTRON sowah
2R	12858166	2R_12858166_SNP [dm3] 2R_16970661_SNP [dm6]	C	G	4.196e^-4	0.981	EXON CR44377
3L	3081310	3L_3081310_SNP [dm3] 3L_3081310_SNP [dm6]	A	T	4.198e^-4	0.981	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14209963	2R_14209963_SNP [dm3] 2R_18322458_SNP [dm6]	G	A	4.199e^-4	0.981	INTRON sbb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	8474331	3R_8474331_SNP [dm3] 3R_12648609_SNP [dm6]	C	T	4.212e^-4	0.981	INTRON Dtg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7883824	3L_7883824_SNP [dm3] 3L_7890724_SNP [dm6]	A	T	4.213e^-4	0.981	INTRON CG32365	TF binding site mE1_TFBS_HSA
2L	9604147	2L_9604147_SNP [dm3] 2L_9604147_SNP [dm6]	G	A	4.229e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	10512915	3R_10512915_SNP [dm3] 3R_14687193_SNP [dm6]	C	A	4.232e^-4	0.981	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8712473	X_8712473_SNP [dm3] X_8818440_SNP [dm6]	A	C	4.244e^-4	0.981	INTERGENIC
3R	25101180	3R_25101180_SNP [dm3] 3R_29275458_SNP [dm6]	A	C	4.245e^-4	0.981	DOWNSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
X	3151678	X_3151678_SNP [dm3] X_3257645_SNP [dm6]	C	T	4.246e^-4	0.981	INTRON dnc
2R	9816974	2R_9816974_SNP [dm3] 2R_13929469_SNP [dm6]	G	A	4.251e^-4	0.981	INTRON shot
2L	20811088	2L_20811088_SNP [dm3] 2L_20811088_SNP [dm6]	C	G	4.255e^-4	0.981	INTRON CG9328
X	18756192	X_18756192_SNP [dm3] X_18862159_SNP [dm6]	T	C	4.261e^-4	0.981	UTR_3_PRIME CG7326 DOWNSTREAM CG32544
2L	17817218	2L_17817218_SNP [dm3] 2L_17817218_SNP [dm6]	G	T	4.266e^-4	0.981	INTRON CadN2
3L	11396899	3L_11396899_SNP [dm3] 3L_11403799_SNP [dm6]	T	C	4.267e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18317017	3L_18317017_SNP [dm3] 3L_18323917_SNP [dm6]	G	C	4.270e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16488338	3R_16488338_SNP [dm3] 3R_20662616_SNP [dm6]	C	A	4.279e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7973643	X_7973643_SNP [dm3] X_8079610_SNP [dm6]	G	A	4.279e^-4	0.981	SYNONYMOUS_CODING CG2254
3R	4477063	3R_4477063_SNP [dm3] 3R_8651341_SNP [dm6]	C	G	4.284e^-4	0.981	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16803345	3R_16803345_SNP [dm3] 3R_20977623_SNP [dm6]	T	C	4.284e^-4	0.981	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19359736	2R_19359736_INS [dm3] 2R_23472213_INS [dm6]	A	AAAGTTGA	4.284e^-4	0.981	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3R	23508008	3R_23508008_DEL [dm3] 3R_27682286_DEL [dm6]	AGGTTTAATTA...	A	4.288e^-4	0.981	UPSTREAM Sce INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21536247	3R_21536247_SNP [dm3] 3R_25710525_SNP [dm6]	A	G	4.289e^-4	0.981	INTRON LpR2
2R	19034459	2R_19034459_SNP [dm3] 2R_23146936_SNP [dm6]	G	T	4.290e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8463894	3R_8463894_INS [dm3] 3R_12638172_INS [dm6]	A	TTT	4.291e^-4	0.981	UPSTREAM CG11608 DOWNSTREAM CG11600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7129241	2R_7129241_SNP [dm3] 2R_11241736_SNP [dm6]	C	T	4.311e^-4	0.981	DOWNSTREAM Listericin INTERGENIC
3L	14936063	3L_14936063_SNP [dm3] 3L_14942963_SNP [dm6]	C	G	4.311e^-4	0.981	DOWNSTREAM DCX-EMAP & 1 other INTERGENIC
2L	9082717	2L_9082717_SNP [dm3] 2L_9082717_SNP [dm6]	T	C	4.327e^-4	0.981	INTERGENIC
2L	3380016	2L_3380016_SNP [dm3] 2L_3380016_SNP [dm6]	T	A	4.331e^-4	0.981	INTERGENIC
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	4.352e^-4	0.981	INTRON Eip63E
2L	18582957	2L_18582957_SNP [dm3] 2L_18582957_SNP [dm6]	A	T	4.354e^-4	0.981	INTRON Pde11	transposable element FlyBase
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	4.355e^-4	0.981	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14441071	3R_14441071_SNP [dm3] 3R_18615349_SNP [dm6]	G	T	4.367e^-4	0.981	INTRON qin & 1 other
2R	15266631	2R_15266631_SNP [dm3] 2R_19379126_SNP [dm6]	C	T	4.377e^-4	0.981	SYNONYMOUS_CODING CG10062
2L	9629431	2L_9629431_DEL [dm3] 2L_9629431_DEL [dm6]	GCAG	G	4.377e^-4	0.981	INTERGENIC
X	1838450	X_1838450_SNP [dm3] X_1944417_SNP [dm6]	A	C	4.388e^-4	0.981	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16224038	3R_16224038_SNP [dm3] 3R_20398316_SNP [dm6]	G	T	4.393e^-4	0.981	INTRON Gfrl
3R	10259379	3R_10259379_SNP [dm3] 3R_14433657_SNP [dm6]	C	T	4.394e^-4	0.981	INTRON cv-c	TF binding site mE1_TFBS_chinmo
2R	20210040	2R_20210040_SNP [dm3] 2R_24322517_SNP [dm6]	A	C	4.395e^-4	0.981	INTERGENIC
3L	7883732	3L_7883732_SNP [dm3] 3L_7890632_SNP [dm6]	A	T	4.397e^-4	0.981	INTRON CG32365	TF binding site mE1_TFBS_HSA
2L	9040148	2L_9040148_SNP [dm3] 2L_9040148_SNP [dm6]	C	T	4.410e^-4	0.981	INTERGENIC
X	19443805	X_19443805_SNP [dm3] X_19549772_SNP [dm6]	G	A	4.411e^-4	0.981	INTERGENIC
2R	20207935	2R_20207935_SNP [dm3] 2R_24320412_SNP [dm6]	C	T	4.413e^-4	0.981	INTERGENIC
3L	7883768	3L_7883768_SNP [dm3] 3L_7890668_SNP [dm6]	G	C	4.420e^-4	0.981	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22517372	3L_22517372_SNP [dm3] 3L_22524272_SNP [dm6]	G	A	4.424e^-4	0.981	INTERGENIC
X	17166921	X_17166921_SNP [dm3] X_17272888_SNP [dm6]	T	G	4.432e^-4	0.981	SPLICE_SITE_REGION f INTRON f	TF binding site mE1_TFBS_cad
2L	10788660	2L_10788660_SNP [dm3] 2L_10788660_SNP [dm6]	C	T	4.432e^-4	0.981	INTRON CG31869
3R	8460092	3R_8460092_SNP [dm3] 3R_12634370_SNP [dm6]	C	A	4.432e^-4	0.981	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2L	9078553	2L_9078553_SNP [dm3] 2L_9078553_SNP [dm6]	T	A	4.434e^-4	0.981	DOWNSTREAM CG12439 INTERGENIC
X	11226214	X_11226214_SNP [dm3] X_11332181_SNP [dm6]	T	C	4.438e^-4	0.981	NON_SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15378982	2L_15378982_SNP [dm3] 2L_15378982_SNP [dm6]	A	G	4.440e^-4	0.981	INTERGENIC
X	2764019	X_2764019_SNP [dm3] X_2869986_SNP [dm6]	A	C	4.447e^-4	0.981	INTRON kirre
3L	7952131	3L_7952131_SNP [dm3] 3L_7959031_SNP [dm6]	G	A	4.448e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7883871	3L_7883871_SNP [dm3] 3L_7890771_SNP [dm6]	C	G	4.449e^-4	0.981	INTRON CG32365	TF binding site mE1_TFBS_HSA
3R	11216218	3R_11216218_SNP [dm3] 3R_15390496_SNP [dm6]	T	A	4.452e^-4	0.981	INTRON Rbp
X	16539560	X_16539560_INS [dm3] X_16645527_INS [dm6]	T	TC	4.455e^-4	0.981	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3385153	2L_3385153_SNP [dm3] 2L_3385153_SNP [dm6]	G	A	4.474e^-4	0.981	INTERGENIC
X	16156457	X_16156457_SNP [dm3] X_16262424_SNP [dm6]	G	A	4.478e^-4	0.981	INTERGENIC
2L	9611295	2L_9611295_SNP [dm3] 2L_9611295_SNP [dm6]	C	T	4.484e^-4	0.981	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12550564	2R_12550564_SNP [dm3] 2R_16663059_SNP [dm6]	A	T	4.491e^-4	0.981	INTRON Picot
3R	21913681	3R_21913681_SNP [dm3] 3R_26087959_SNP [dm6]	G	A	4.494e^-4	0.981	INTRON dys
3L	18276133	3L_18276133_SNP [dm3] 3L_18283033_SNP [dm6]	G	T	4.503e^-4	0.981	INTERGENIC
2R	15843500	2R_15843500_SNP [dm3] 2R_19955995_SNP [dm6]	G	A	4.510e^-4	0.981	UPSTREAM CG44623 INTERGENIC
X	19503460	X_19503460_SNP [dm3] X_19609427_SNP [dm6]	A	T	4.527e^-4	0.981	UPSTREAM CG14207 INTRON CG14207	TF binding site BDTNP1_TFBS_twi
3L	14524290	3L_14524290_SNP [dm3] 3L_14531190_SNP [dm6]	A	T	4.533e^-4	0.981	INTRON bbg
3R	16803309	3R_16803309_SNP [dm3] 3R_20977587_SNP [dm6]	A	T	4.535e^-4	0.981	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19491849	X_19491849_SNP [dm3] X_19597816_SNP [dm6]	G	T	4.543e^-4	0.981	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	16803272	3R_16803272_SNP [dm3] 3R_20977550_SNP [dm6]	A	G	4.543e^-4	0.981	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20128231	2L_20128231_SNP [dm3] 2L_20128231_SNP [dm6]	T	A	4.543e^-4	0.981	INTERGENIC
X	1834906	X_1834906_SNP [dm3] X_1940873_SNP [dm6]	G	A	4.545e^-4	0.981	SYNONYMOUS_CODING CG3587 UPSTREAM CG3857	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	4.547e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18451318	3R_18451318_SNP [dm3] 3R_22625596_SNP [dm6]	T	C	4.547e^-4	0.981	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	9643546	2R_9643546_SNP [dm3] 2R_13756041_SNP [dm6]	C	T	4.551e^-4	0.981	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
3R	7542072	3R_7542072_SNP [dm3] 3R_11716350_SNP [dm6]	C	T	4.552e^-4	0.981	INTERGENIC
3R	10873659	3R_10873659_SNP [dm3] 3R_15047937_SNP [dm6]	T	A	4.553e^-4	0.981	INTERGENIC
3L	15306965	3L_15306965_SNP [dm3] 3L_15313865_SNP [dm6]	T	A	4.558e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9463273	3L_9463273_SNP [dm3] 3L_9470173_SNP [dm6]	C	T	4.559e^-4	0.981	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
2R	20205042	2R_20205042_SNP [dm3] 2R_24317519_SNP [dm6]	C	G	4.566e^-4	0.981	INTERGENIC
X	20465076	X_20465076_SNP [dm3] X_20594049_SNP [dm6]	C	T	4.566e^-4	0.981	INTRON RunxA
2R	12688091	2R_12688091_SNP [dm3] 2R_16800586_SNP [dm6]	A	T	4.567e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12688101	2R_12688101_SNP [dm3] 2R_16800596_SNP [dm6]	G	A	4.567e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8450604	3L_8450604_INS [dm3] 3L_8457504_INS [dm6]	T	TGCCAGGCCAGGCAT...	4.573e^-4	0.981	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	972852	2L_972852_SNP [dm3] 2L_972852_SNP [dm6]	T	C	4.575e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	589897	2L_589897_SNP [dm3] 2L_589897_SNP [dm6]	C	A	4.577e^-4	0.981	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	9195011	3R_9195011_SNP [dm3] 3R_13369289_SNP [dm6]	T	A	4.584e^-4	0.981	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2L	9628118	2L_9628118_SNP [dm3] 2L_9628118_SNP [dm6]	G	T	4.588e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19443880	X_19443880_SNP [dm3] X_19549847_SNP [dm6]	A	T	4.600e^-4	0.981	INTERGENIC
3R	23508019	3R_23508019_INS [dm3] 3R_27682297_INS [dm6]	C	CACATAATGTATTTA...	4.608e^-4	0.981	UPSTREAM Sce INTERGENIC
3R	2783069	3R_2783069_SNP [dm3] 3R_6957347_SNP [dm6]	T	C	4.621e^-4	0.981	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16934917	X_16934917_SNP [dm3] X_17040884_SNP [dm6]	T	A	4.622e^-4	0.981	INTRON CG45002
3R	7674245	3R_7674245_SNP [dm3] 3R_11848523_SNP [dm6]	G	T	4.625e^-4	0.981	INTRON CG6959	TF binding site mE1_TFBS_cad
2L	8255605	2L_8255605_SNP [dm3] 2L_8255605_SNP [dm6]	T	A	4.628e^-4	0.981	INTRON CG8086
3R	11643311	3R_11643311_SNP [dm3] 3R_15817589_SNP [dm6]	A	G	4.633e^-4	0.981	INTRON alpha-Man-IIb
3L	21375865	3L_21375865_DEL [dm3] 3L_21382765_DEL [dm6]	AACG	C	4.639e^-4	0.981	UTR_5_PRIME rgn
2L	9629561	2L_9629561_SNP [dm3] 2L_9629561_SNP [dm6]	G	A	4.640e^-4	0.981	INTERGENIC
3R	21568768	3R_21568768_SNP [dm3] 3R_25743046_SNP [dm6]	C	A	4.644e^-4	0.981	INTRON LpR1
X	19443877	X_19443877_SNP [dm3] X_19549844_SNP [dm6]	A	T	4.654e^-4	0.981	INTERGENIC
2R	16767543	2R_16767543_SNP [dm3] 2R_20880038_SNP [dm6]	G	A	4.657e^-4	0.981	UTR_5_PRIME Cib2 DOWNSTREAM Ipk1
2L	3263211	2L_3263211_SNP [dm3] 2L_3263211_SNP [dm6]	G	T	4.658e^-4	0.981	DOWNSTREAM CR45706 INTERGENIC
3L	789141	3L_789141_SNP [dm3] 3L_789141_SNP [dm6]	G	A	4.659e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	19435666	X_19435666_SNP [dm3] X_19541633_SNP [dm6]	G	A	4.660e^-4	0.981	INTRON CG32532
3R	21594385	3R_21594385_SNP [dm3] 3R_25768663_SNP [dm6]	T	G	4.663e^-4	0.981	INTERGENIC
2L	16266511	2L_16266511_SNP [dm3] 2L_16266511_SNP [dm6]	G	A	4.672e^-4	0.981	SYNONYMOUS_CODING crp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9909796	2L_9909796_SNP [dm3] 2L_9909796_SNP [dm6]	A	G	4.674e^-4	0.981	SYNONYMOUS_CODING Etl1
3L	21037359	3L_21037359_DEL [dm3] 3L_21044259_DEL [dm6]	CG	C	4.680e^-4	0.981	INTRON siz	TF binding site mE1_TFBS_sens
X	12957601	X_12957601_SNP [dm3] X_13063568_SNP [dm6]	C	A	4.685e^-4	0.981	INTRON rad
X	20690108	X_20690108_SNP [dm3] X_20819081_SNP [dm6]	G	A	4.695e^-4	0.981	INTRON shakB
2L	9909914	2L_9909914_SNP [dm3] 2L_9909914_SNP [dm6]	A	T	4.705e^-4	0.981	INTRON Etl1
3R	21564531	3R_21564531_SNP [dm3] 3R_25738809_SNP [dm6]	A	C	4.710e^-4	0.981	INTRON LpR2	TF binding site mE1_TFBS_Trl
2R	9359413	2R_9359413_SNP [dm3] 2R_13471908_SNP [dm6]	C	A	4.717e^-4	0.981	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18574185	3R_18574185_SNP [dm3] 3R_22748463_SNP [dm6]	A	G	4.726e^-4	0.981	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad
3L	8222029	3L_8222029_SNP [dm3] 3L_8228929_SNP [dm6]	G	A	4.726e^-4	0.981	UPSTREAM eIF4E-3 INTERGENIC
3L	9463186	3L_9463186_DEL [dm3] 3L_9470086_DEL [dm6]	CCAT	C	4.731e^-4	0.981	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15960988	2R_15960988_SNP [dm3] 2R_20073483_SNP [dm6]	A	G	4.732e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7756084	3L_7756084_SNP [dm3] 3L_7762984_SNP [dm6]	C	T	4.739e^-4	0.981	SYNONYMOUS_CODING Hn DOWNSTREAM Clk
3L	11237025	3L_11237025_SNP [dm3] 3L_11243925_SNP [dm6]	T	C	4.748e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	17165805	X_17165805_SNP [dm3] X_17271772_SNP [dm6]	A	G	4.752e^-4	0.981	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7754659	3R_7754659_SNP [dm3] 3R_11928937_SNP [dm6]	C	G	4.753e^-4	0.981	INTRON Cad87A
2R	15291583	2R_15291583_SNP [dm3] 2R_19404078_SNP [dm6]	C	G	4.753e^-4	0.981	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15675317	3R_15675317_SNP [dm3] 3R_19849595_SNP [dm6]	T	C	4.754e^-4	0.981	INTRON CG4662
3R	26596019	3R_26596019_SNP [dm3] 3R_30770297_SNP [dm6]	G	T	4.768e^-4	0.981	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17255675	3L_17255675_INS [dm3] 3L_17262575_INS [dm6]	T	TG	4.777e^-4	0.981	INTRON CR43870
2L	9078557	2L_9078557_SNP [dm3] 2L_9078557_SNP [dm6]	C	T	4.794e^-4	0.981	DOWNSTREAM CG12439 INTERGENIC
2R	12548241	2R_12548241_SNP [dm3] 2R_16660736_SNP [dm6]	C	T	4.795e^-4	0.981	INTRON Picot
X	17165804	X_17165804_SNP [dm3] X_17271771_SNP [dm6]	G	A	4.799e^-4	0.981	NON_SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1410222	3L_1410222_SNP [dm3] 3L_1410222_SNP [dm6]	T	A	4.803e^-4	0.981	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5446482	3R_5446482_SNP [dm3] 3R_9620760_SNP [dm6]	A	T	4.804e^-4	0.981	INTRON CG8312
2R	17708045	2R_17708045_SNP [dm3] 2R_21820540_SNP [dm6]	A	G	4.818e^-4	0.981	DOWNSTREAM CG13492 INTERGENIC
2L	870456	2L_870456_SNP [dm3] 2L_870456_SNP [dm6]	A	C	4.821e^-4	0.981	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9755631	2R_9755631_SNP [dm3] 2R_13868126_SNP [dm6]	G	T	4.826e^-4	0.981	INTRON shot
3R	26681628	3R_26681628_DEL [dm3] 3R_30855906_DEL [dm6]	AAATATTATTTAAAAATATG...	A	4.835e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22531860	3L_22531860_SNP [dm3] 3L_22538760_SNP [dm6]	A	G	4.844e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8515486	3R_8515486_SNP [dm3] 3R_12689764_SNP [dm6]	A	T	4.859e^-4	0.981	UPSTREAM kar DOWNSTREAM Su_fu_ INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17428170	2R_17428170_SNP [dm3] 2R_21540665_SNP [dm6]	A	G	4.864e^-4	0.981	UPSTREAM CG30283 INTRON Egfr
2L	10111371	2L_10111371_SNP [dm3] 2L_10111371_SNP [dm6]	G	A	4.865e^-4	0.981	INTRON CG44153 & 1 other
X	15988964	X_15988964_SNP [dm3] X_16094931_SNP [dm6]	T	C	4.883e^-4	0.981	SYNONYMOUS_CODING CG42354 UTR_3_PRIME CG42353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19377257	2R_19377257_INS [dm3] 2R_23489734_INS [dm6]	A	AAATATA	4.887e^-4	0.981	INTRON CG43795
2L	9626252	2L_9626252_SNP [dm3] 2L_9626252_SNP [dm6]	C	A	4.890e^-4	0.981	UPSTREAM CG31882 INTERGENIC
3R	16808926	3R_16808926_SNP [dm3] 3R_20983204_SNP [dm6]	G	A	4.897e^-4	0.981	INTRON Calx
2L	12893667	2L_12893667_INS [dm3] 2L_12893667_INS [dm6]	G	AA	4.908e^-4	0.981	INTERGENIC
2L	18582958	2L_18582958_SNP [dm3] 2L_18582958_SNP [dm6]	A	T	4.922e^-4	0.981	INTRON Pde11	transposable element FlyBase
X	7408603	X_7408603_SNP [dm3] X_7514570_SNP [dm6]	A	G	4.924e^-4	0.981	INTRON CG32719	TF binding site mE1_TFBS_inv
2R	10851260	2R_10851260_INS [dm3] 2R_14963755_INS [dm6]	A	AA	4.926e^-4	0.981	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	11427255	2L_11427255_SNP [dm3] 2L_11427255_SNP [dm6]	C	T	4.939e^-4	0.981	INTERGENIC
3R	8484155	3R_8484155_SNP [dm3] 3R_12658433_SNP [dm6]	T	C	4.941e^-4	0.981	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21121543	X_21121543_SNP [dm3] X_21250516_SNP [dm6]	G	A	4.944e^-4	0.981	SYNONYMOUS_CODING CG1722 INTRON CG32521
2R	14209899	2R_14209899_SNP [dm3] 2R_18322394_SNP [dm6]	A	G	4.956e^-4	0.981	INTRON sbb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	15381398	2L_15381398_SNP [dm3] 2L_15381398_SNP [dm6]	T	C	4.960e^-4	0.981	INTERGENIC
3R	24956851	3R_24956851_SNP [dm3] 3R_29131129_SNP [dm6]	G	T	4.961e^-4	0.981	UPSTREAM Vha100-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	21962695	X_21962695_SNP [dm3] X_22560859_SNP [dm6]	A	T	4.973e^-4	0.981	INTERGENIC	transposable element FlyBase
3L	14058120	3L_14058120_SNP [dm3] 3L_14065020_SNP [dm6]	T	A	4.981e^-4	0.981	INTRON CG32138
2L	7167060	2L_7167060_SNP [dm3] 2L_7167060_SNP [dm6]	T	C	4.988e^-4	0.981	INTERGENIC
2L	4028101	2L_4028101_SNP [dm3] 2L_4028101_SNP [dm6]	A	G	5.010e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	5.010e^-4	0.981	INTERGENIC
2R	13921594	2R_13921594_SNP [dm3] 2R_18034089_SNP [dm6]	A	C	5.014e^-4	0.981	INTERGENIC
3L	1197078	3L_1197078_SNP [dm3] 3L_1197078_SNP [dm6]	G	A	5.015e^-4	0.981	SYNONYMOUS_CODING Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18445138	3R_18445138_SNP [dm3] 3R_22619416_SNP [dm6]	C	T	5.017e^-4	0.981	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco	TF binding site mE1_TFBS_sens
2L	9624936	2L_9624936_SNP [dm3] 2L_9624936_SNP [dm6]	C	T	5.019e^-4	0.981	SYNONYMOUS_CODING CG31882
X	14544610	X_14544610_SNP [dm3] X_14650577_SNP [dm6]	T	A	5.020e^-4	0.981	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	12173510	3L_12173510_SNP [dm3] 3L_12180410_SNP [dm6]	C	T	5.023e^-4	0.981	INTRON CAH2
X	16808648	X_16808648_SNP [dm3] X_16914615_SNP [dm6]	G	A	5.024e^-4	0.981	INTRON CG4928
2L	14843718	2L_14843718_SNP [dm3] 2L_14843718_SNP [dm6]	G	A	5.030e^-4	0.981	DOWNSTREAM CG42682 INTERGENIC
3R	25395702	3R_25395702_SNP [dm3] 3R_29569980_SNP [dm6]	C	T	5.036e^-4	0.981	INTERGENIC
2L	7553825	2L_7553825_SNP [dm3] 2L_7553825_SNP [dm6]	G	A	5.055e^-4	0.981	INTRON RapGAP1
2R	9611789	2R_9611789_SNP [dm3] 2R_13724284_SNP [dm6]	T	C	5.060e^-4	0.981	INTRON fas	TF binding site mE1_TFBS_cad
3L	19003342	3L_19003342_SNP [dm3] 3L_19010242_SNP [dm6]	A	C	5.070e^-4	0.981	INTRON nkd
3L	10240616	3L_10240616_SNP [dm3] 3L_10247516_SNP [dm6]	C	A	5.078e^-4	0.981	DOWNSTREAM CR44540 EXON CR44539	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11773725	3R_11773725_SNP [dm3] 3R_15948003_SNP [dm6]	G	T	5.081e^-4	0.981	INTRON Sap47
2R	15047861	2R_15047861_SNP [dm3] 2R_19160356_SNP [dm6]	T	C	5.085e^-4	0.981	SYNONYMOUS_CODING ena
3R	24806351	3R_24806351_SNP [dm3] 3R_28980629_SNP [dm6]	A	C	5.087e^-4	0.981	INTERGENIC
3R	16224034	3R_16224034_SNP [dm3] 3R_20398312_SNP [dm6]	G	T	5.091e^-4	0.981	INTRON Gfrl
X	16525639	X_16525639_SNP [dm3] X_16631606_SNP [dm6]	C	T	5.105e^-4	0.981	NON_SYNONYMOUS_CODING CG9777 UPSTREAM CR45001 INTRON Rok	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10268414	2L_10268414_SNP [dm3] 2L_10268414_SNP [dm6]	G	A	5.112e^-4	0.981	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
2L	12893465	2L_12893465_SNP [dm3] 2L_12893465_SNP [dm6]	G	A	5.114e^-4	0.981	INTERGENIC
2R	17566237	2R_17566237_SNP [dm3] 2R_21678732_SNP [dm6]	G	A	5.118e^-4	0.981	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10866088	X_10866088_SNP [dm3] X_10972055_SNP [dm6]	G	C	5.132e^-4	0.981	INTRON CG42339
3R	16223935	3R_16223935_SNP [dm3] 3R_20398213_SNP [dm6]	G	T	5.137e^-4	0.981	INTRON Gfrl
3R	16989991	3R_16989991_SNP [dm3] 3R_21164269_SNP [dm6]	C	A	5.137e^-4	0.981	NON_SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20467966	X_20467966_SNP [dm3] X_20596939_SNP [dm6]	C	A	5.145e^-4	0.981	INTRON RunxA
2R	10379510	2R_10379510_SNP [dm3] 2R_14492005_SNP [dm6]	G	A	5.148e^-4	0.981	INTRON L
2L	17773955	2L_17773955_SNP [dm3] 2L_17773955_SNP [dm6]	G	A	5.157e^-4	0.981	INTRON CadN
3R	26559409	3R_26559409_SNP [dm3] 3R_30733687_SNP [dm6]	T	G	5.169e^-4	0.981	INTERGENIC
3L	1135448	3L_1135448_DEL [dm3] 3L_1135448_DEL [dm6]	GGTTTATATTACAAG...	G	5.169e^-4	0.981	INTERGENIC
3L	12116762	3L_12116762_SNP [dm3] 3L_12123662_SNP [dm6]	G	T	5.173e^-4	0.981	INTRON yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6435284	2R_6435284_SNP [dm3] 2R_10547779_SNP [dm6]	G	T	5.174e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8281106	2L_8281106_SNP [dm3] 2L_8281106_SNP [dm6]	C	T	5.177e^-4	0.981	INTRON Btk29A	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr
3R	4067874	3R_4067874_SNP [dm3] 3R_8242152_SNP [dm6]	C	A	5.187e^-4	0.981	UTR_3_PRIME CG9636
3R	4067879	3R_4067879_SNP [dm3] 3R_8242157_SNP [dm6]	G	A	5.187e^-4	0.981	UTR_3_PRIME CG9636
3R	4067880	3R_4067880_SNP [dm3] 3R_8242158_SNP [dm6]	T	C	5.187e^-4	0.981	UTR_3_PRIME CG9636
2R	20379809	2R_20379809_SNP [dm3] 2R_24492286_SNP [dm6]	T	C	5.193e^-4	0.981	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	8394817	3L_8394817_SNP [dm3] 3L_8401717_SNP [dm6]	C	T	5.193e^-4	0.981	SYNONYMOUS_CODING CG7120 DOWNSTREAM mkg-p & 1 other	TF binding site mE1_TFBS_cad
3R	2588945	3R_2588945_SNP [dm3] 3R_6763223_SNP [dm6]	G	A	5.204e^-4	0.981	UPSTREAM Ama & 1 other INTRON Ama EXON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	20222426	2R_20222426_SNP [dm3] 2R_24334903_SNP [dm6]	C	A	5.209e^-4	0.981	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1804086	2R_1804086_SNP [dm3] 2R_5916581_SNP [dm6]	C	T	5.211e^-4	0.981	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3R	8489060	3R_8489060_SNP [dm3] 3R_12663338_SNP [dm6]	T	C	5.211e^-4	0.981	UPSTREAM CG14395 INTRON CG14395
2R	13494012	2R_13494012_SNP [dm3] 2R_17606507_SNP [dm6]	T	A	5.212e^-4	0.981	INTRON CG10936
3L	22339011	3L_22339011_SNP [dm3] 3L_22345911_SNP [dm6]	C	G	5.214e^-4	0.981	INTRON Ten-m
3L	1034339	3L_1034339_SNP [dm3] 3L_1034339_SNP [dm6]	T	C	5.217e^-4	0.981	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14492282	X_14492282_SNP [dm3] X_14598249_SNP [dm6]	G	A	5.224e^-4	0.981	INTRON CG9413
X	15105824	X_15105824_SNP [dm3] X_15211791_SNP [dm6]	C	T	5.225e^-4	0.981	DOWNSTREAM CG5662 INTERGENIC
3R	15565649	3R_15565649_DEL [dm3] 3R_19739927_DEL [dm6]	ATAA	A	5.225e^-4	0.981	INTRON GluClalpha
2L	3307028	2L_3307028_SNP [dm3] 2L_3307028_SNP [dm6]	C	T	5.235e^-4	0.981	INTRON CG3277
2L	8574900	2L_8574900_SNP [dm3] 2L_8574900_SNP [dm6]	C	T	5.238e^-4	0.981	INTRON Sema-1a
3R	21568410	3R_21568410_SNP [dm3] 3R_25742688_SNP [dm6]	A	G	5.239e^-4	0.981	INTRON LpR1
3R	1899224	3R_1899224_SNP [dm3] 3R_6073502_SNP [dm6]	C	T	5.243e^-4	0.981	INTERGENIC
X	19492251	X_19492251_SNP [dm3] X_19598218_SNP [dm6]	G	A	5.244e^-4	0.981	UPSTREAM RpS10b INTRON RpS10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	2857256	X_2857256_SNP [dm3] X_2963223_SNP [dm6]	C	T	5.252e^-4	0.981	INTRON kirre & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17708060	2R_17708060_SNP [dm3] 2R_21820555_SNP [dm6]	G	A	5.259e^-4	0.981	DOWNSTREAM CG13492 INTERGENIC
3L	20537737	3L_20537737_SNP [dm3] 3L_20544637_SNP [dm6]	T	C	5.262e^-4	0.981	INTERGENIC
3R	22064567	3R_22064567_SNP [dm3] 3R_26238845_SNP [dm6]	G	T	5.280e^-4	0.981	INTRON CR42745
2L	3927975	2L_3927975_SNP [dm3] 2L_3927975_SNP [dm6]	G	T	5.282e^-4	0.981	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12585650	X_12585650_SNP [dm3] X_12691617_SNP [dm6]	T	G	5.283e^-4	0.981	NON_SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11863103	2L_11863103_INS [dm3] 2L_11863103_INS [dm6]	A	AA	5.293e^-4	0.981	INTRON Pde1c
X	6443330	X_6443330_SNP [dm3] X_6549297_SNP [dm6]	C	T	5.299e^-4	0.981	INTRON CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20214627	2R_20214627_SNP [dm3] 2R_24327104_SNP [dm6]	G	A	5.310e^-4	0.981	INTRON CR44810
X	2655020	X_2655020_SNP [dm3] X_2760987_SNP [dm6]	C	T	5.313e^-4	0.981	INTRON kirre
2R	14557410	2R_14557410_SNP [dm3] 2R_18669905_SNP [dm6]	T	C	5.316e^-4	0.981	INTRON edl
X	8936052	X_8936052_SNP [dm3] X_9042019_SNP [dm6]	T	A	5.322e^-4	0.981	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22269526	3L_22269526_SNP [dm3] 3L_22276426_SNP [dm6]	T	C	5.328e^-4	0.981	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
2R	19708647	2R_19708647_SNP [dm3] 2R_23821124_SNP [dm6]	A	T	5.341e^-4	0.981	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	1675626	2L_1675626_SNP [dm3] 2L_1675626_SNP [dm6]	A	T	5.341e^-4	0.981	INTRON chinmo
2R	6662432	2R_6662432_SNP [dm3] 2R_10774927_SNP [dm6]	C	T	5.342e^-4	0.981	INTRON CG33144

By genomic position
Variant impact
Gene name

Lifespan_28C phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results