DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.075e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2935 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	19099406	3L_19099406_SNP [dm3] 3L_19106306_SNP [dm6]	G	A	5.876e^-7	0.639	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	19117758	3L_19117758_SNP [dm3] 3L_19124658_SNP [dm6]	C	A	7.167e^-7	0.639	INTRON CG14082
X	10337905	X_10337905_SNP [dm3] X_10443872_SNP [dm6]	T	C	1.741e^-6	0.639	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3L	9131663	3L_9131663_SNP [dm3] 3L_9138563_SNP [dm6]	G	A	2.692e^-6	0.639	INTRON nwk	TF binding site BDTNP1_TFBS_dl
X	10337738	X_10337738_SNP [dm3] X_10443705_SNP [dm6]	C	A	3.624e^-6	0.639	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3L	13001913	3L_13001913_SNP [dm3] 3L_13008813_SNP [dm6]	T	C	3.685e^-6	0.639	SYNONYMOUS_CODING CG14117 DOWNSTREAM CG11263 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	13001914	3L_13001914_SNP [dm3] 3L_13008814_SNP [dm6]	T	G	3.685e^-6	0.639	NON_SYNONYMOUS_CODING CG14117 DOWNSTREAM CG11263 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	13001824	3L_13001824_SNP [dm3] 3L_13008724_SNP [dm6]	C	T	3.976e^-6	0.639	STOP_GAINED CG14117 DOWNSTREAM CG11263 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	17190805	2R_17190805_SNP [dm3] 2R_21303300_SNP [dm6]	T	A	4.146e^-6	0.639	INTRON CG42672
3L	16790786	3L_16790786_DEL [dm3] 3L_16797686_DEL [dm6]	CTT	AC	4.848e^-6	0.639	INTRON CG9674
2R	17336939	2R_17336939_SNP [dm3] 2R_21449434_SNP [dm6]	G	C	5.806e^-6	0.639	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	2124783	2L_2124783_SNP [dm3] 2L_2124783_SNP [dm6]	G	C	6.290e^-6	0.639	INTERGENIC
3R	12567345	3R_12567345_SNP [dm3] 3R_16741623_SNP [dm6]	T	C	7.274e^-6	0.639	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	12536351	3R_12536351_SNP [dm3] 3R_16710629_SNP [dm6]	G	A	7.846e^-6	0.639	INTRON Ubx
3L	19099583	3L_19099583_SNP [dm3] 3L_19106483_SNP [dm6]	A	G	8.313e^-6	0.639	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	19099594	3L_19099594_SNP [dm3] 3L_19106494_SNP [dm6]	T	A	8.318e^-6	0.639	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	9583195	3L_9583195_SNP [dm3] 3L_9590095_SNP [dm6]	C	G	8.852e^-6	0.639	INTRON CG42673
3R	3217939	3R_3217939_SNP [dm3] 3R_7392217_SNP [dm6]	G	T	8.915e^-6	0.639	UTR_3_PRIME CG42650
3R	25339720	3R_25339720_SNP [dm3] 3R_29513998_SNP [dm6]	C	T	9.078e^-6	0.639	INTERGENIC
2L	10556854	2L_10556854_SNP [dm3] 2L_10556854_SNP [dm6]	T	C	9.657e^-6	0.639	INTRON Trim9
3R	13319559	3R_13319559_SNP [dm3] 3R_17493837_SNP [dm6]	G	T	9.875e^-6	0.639	INTRON Dscam3
2L	10556825	2L_10556825_SNP [dm3] 2L_10556825_SNP [dm6]	T	A	1.063e^-5	0.639	INTRON Trim9
3L	9583196	3L_9583196_SNP [dm3] 3L_9590096_SNP [dm6]	T	C	1.117e^-5	0.639	INTRON CG42673
2R	19439590	2R_19439590_SNP [dm3] 2R_23552067_SNP [dm6]	C	A	1.210e^-5	0.639	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2366157	3L_2366157_SNP [dm3] 3L_2366157_SNP [dm6]	C	A	1.235e^-5	0.639	INTERGENIC
3L	19098152	3L_19098152_SNP [dm3] 3L_19105052_SNP [dm6]	A	T	1.247e^-5	0.639	DOWNSTREAM CG14082 INTERGENIC
X	6353844	X_6353844_SNP [dm3] X_6459811_SNP [dm6]	G	A	1.251e^-5	0.639	INTRON CG42340
3L	13001939	3L_13001939_SNP [dm3] 3L_13008839_SNP [dm6]	T	G	1.329e^-5	0.639	NON_SYNONYMOUS_CODING CG14117 DOWNSTREAM CG11263 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	16166893	2L_16166893_SNP [dm3] 2L_16166893_SNP [dm6]	C	A	1.380e^-5	0.639	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
3R	13875383	3R_13875383_SNP [dm3] 3R_18049661_SNP [dm6]	G	A	1.585e^-5	0.639	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24306910	3R_24306910_DEL [dm3] 3R_28481188_DEL [dm6]	GTACCTGCATATAGG...	G	1.630e^-5	0.639	INTERGENIC
3R	2674924	3R_2674924_SNP [dm3] 3R_6849202_SNP [dm6]	G	T	1.637e^-5	0.639	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2419814	X_2419814_SNP [dm3] X_2525781_SNP [dm6]	T	A	1.642e^-5	0.639	INTRON trol
3L	12090591	3L_12090591_DEL [dm3] 3L_12097491_DEL [dm6]	ACTTACTTAATTTA...	A	1.695e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19118636	3L_19118636_SNP [dm3] 3L_19125536_SNP [dm6]	T	G	1.722e^-5	0.639	INTRON CG14082
3R	25768158	3R_25768158_SNP [dm3] 3R_29942436_SNP [dm6]	A	G	1.730e^-5	0.639	SYNONYMOUS_CODING CG15523
2R	4692197	2R_4692197_SNP [dm3] 2R_8804692_SNP [dm6]	A	G	1.772e^-5	0.639	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2422089	X_2422089_SNP [dm3] X_2528056_SNP [dm6]	A	G	1.801e^-5	0.639	INTRON trol
2R	7526647	2R_7526647_SNP [dm3] 2R_11639142_SNP [dm6]	G	T	1.851e^-5	0.639	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19108393	3L_19108393_SNP [dm3] 3L_19115293_SNP [dm6]	T	G	1.973e^-5	0.639	INTRON CG14082
3R	8010326	3R_8010326_SNP [dm3] 3R_12184604_SNP [dm6]	T	G	1.974e^-5	0.639	INTERGENIC
3L	19092166	3L_19092166_SNP [dm3] 3L_19099066_SNP [dm6]	A	T	1.980e^-5	0.639	DOWNSTREAM Gem2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	17337046	2R_17337046_SNP [dm3] 2R_21449541_SNP [dm6]	C	T	2.025e^-5	0.639	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2R	14416127	2R_14416127_SNP [dm3] 2R_18528622_SNP [dm6]	T	A	2.030e^-5	0.639	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17626070	3L_17626070_SNP [dm3] 3L_17632970_SNP [dm6]	C	G	2.046e^-5	0.639	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
3R	25771046	3R_25771046_SNP [dm3] 3R_29945324_SNP [dm6]	G	A	2.074e^-5	0.639	INTRON CG15523
2R	11452763	2R_11452763_SNP [dm3] 2R_15565258_SNP [dm6]	T	C	2.167e^-5	0.639	INTRON CG8195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	2482390	2L_2482390_SNP [dm3] 2L_2482390_SNP [dm6]	C	G	2.296e^-5	0.639	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	2672852	3R_2672852_SNP [dm3] 3R_6847130_SNP [dm6]	G	A	2.351e^-5	0.639	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25773299	3R_25773299_SNP [dm3] 3R_29947577_SNP [dm6]	T	C	2.369e^-5	0.639	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21062694	3R_21062694_INS [dm3] 3R_25236972_INS [dm6]	T	TA	2.392e^-5	0.639	UPSTREAM CG11852 INTERGENIC
3L	12897842	3L_12897842_DEL [dm3] 3L_12904742_DEL [dm6]	TT	T	2.461e^-5	0.639	INTERGENIC
2R	8133263	2R_8133263_SNP [dm3] 2R_12245758_SNP [dm6]	T	C	2.465e^-5	0.639	DOWNSTREAM CR44315 INTERGENIC
2R	17278684	2R_17278684_SNP [dm3] 2R_21391179_SNP [dm6]	T	C	2.473e^-5	0.639	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14188562	2R_14188562_SNP [dm3] 2R_18301057_SNP [dm6]	G	A	2.482e^-5	0.639	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17337099	2R_17337099_SNP [dm3] 2R_21449594_SNP [dm6]	G	T	2.497e^-5	0.639	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2676450	3R_2676450_SNP [dm3] 3R_6850728_SNP [dm6]	C	A	2.578e^-5	0.639	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10337902	X_10337902_SNP [dm3] X_10443869_SNP [dm6]	C	A	2.586e^-5	0.639	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3R	19275441	3R_19275441_SNP [dm3] 3R_23449719_SNP [dm6]	A	G	2.726e^-5	0.639	INTRON CG4374
3L	19108334	3L_19108334_SNP [dm3] 3L_19115234_SNP [dm6]	A	T	2.729e^-5	0.639	INTRON CG14082
3L	19108335	3L_19108335_SNP [dm3] 3L_19115235_SNP [dm6]	T	G	2.738e^-5	0.639	INTRON CG14082
3R	2676467	3R_2676467_SNP [dm3] 3R_6850745_SNP [dm6]	T	C	2.829e^-5	0.639	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2676301	3R_2676301_SNP [dm3] 3R_6850579_SNP [dm6]	G	A	2.839e^-5	0.639	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	23276953	3R_23276953_SNP [dm3] 3R_27451231_SNP [dm6]	G	T	2.865e^-5	0.639	INTERGENIC
2L	2926098	2L_2926098_SNP [dm3] 2L_2926098_SNP [dm6]	G	A	2.918e^-5	0.639	INTRON lilli
3L	7854301	3L_7854301_SNP [dm3] 3L_7861201_SNP [dm6]	A	C	2.939e^-5	0.639	INTRON Pdp1
3R	2673094	3R_2673094_SNP [dm3] 3R_6847372_SNP [dm6]	T	G	2.976e^-5	0.639	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18924341	3L_18924341_SNP [dm3] 3L_18931241_SNP [dm6]	T	A	3.079e^-5	0.639	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	14416214	2R_14416214_SNP [dm3] 2R_18528709_SNP [dm6]	G	A	3.163e^-5	0.639	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2419212	X_2419212_SNP [dm3] X_2525179_SNP [dm6]	C	G	3.239e^-5	0.639	INTRON trol	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	2419228	X_2419228_SNP [dm3] X_2525195_SNP [dm6]	C	A	3.239e^-5	0.639	INTRON trol	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18704184	3R_18704184_SNP [dm3] 3R_22878462_SNP [dm6]	A	C	3.257e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2418394	X_2418394_SNP [dm3] X_2524361_SNP [dm6]	T	C	3.328e^-5	0.639	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	9831486	X_9831486_SNP [dm3] X_9937453_SNP [dm6]	G	A	3.348e^-5	0.639	INTERGENIC
2R	11452746	2R_11452746_SNP [dm3] 2R_15565241_SNP [dm6]	G	C	3.373e^-5	0.639	INTRON CG8195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17278579	2R_17278579_SNP [dm3] 2R_21391074_SNP [dm6]	A	T	3.402e^-5	0.639	INTRON Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19089445	3L_19089445_SNP [dm3] 3L_19096345_SNP [dm6]	T	G	3.424e^-5	0.639	UPSTREAM CG11577 DOWNSTREAM CG10424 INTERGENIC
3R	23225070	3R_23225070_SNP [dm3] 3R_27399348_SNP [dm6]	C	A	3.435e^-5	0.639	INTRON side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19439498	2R_19439498_SNP [dm3] 2R_23551975_SNP [dm6]	T	A	3.478e^-5	0.639	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17569634	3R_17569634_SNP [dm3] 3R_21743912_SNP [dm6]	G	A	3.493e^-5	0.639	SYNONYMOUS_CODING CG5849 UTR_3_PRIME CG5849
3R	16849332	3R_16849332_SNP [dm3] 3R_21023610_SNP [dm6]	T	A	3.499e^-5	0.639	UTR_5_PRIME CG17278 DOWNSTREAM Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6298635	3L_6298635_SNP [dm3] 3L_6305535_SNP [dm6]	A	T	3.516e^-5	0.639	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	7380517	3L_7380517_SNP [dm3] 3L_7387417_SNP [dm6]	A	G	3.536e^-5	0.639	UPSTREAM CG8564 INTRON CG8564	TF binding site mE1_TFBS_cad
3R	13319565	3R_13319565_SNP [dm3] 3R_17493843_SNP [dm6]	G	A	3.558e^-5	0.639	INTRON Dscam3
3R	18036560	3R_18036560_SNP [dm3] 3R_22210838_SNP [dm6]	T	C	3.576e^-5	0.639	UPSTREAM Gld2 INTRON SKIP
2R	7139746	2R_7139746_SNP [dm3] 2R_11252241_SNP [dm6]	C	A	3.680e^-5	0.639	SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da
2L	17153452	2L_17153452_SNP [dm3] 2L_17153452_SNP [dm6]	T	G	3.688e^-5	0.639	INTRON beat-IIIa & 1 other
2R	18565090	2R_18565090_SNP [dm3] 2R_22677585_SNP [dm6]	T	C	3.727e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3990320	2L_3990320_SNP [dm3] 2L_3990320_SNP [dm6]	T	C	3.732e^-5	0.639	INTRON fred	TF binding site mE1_TFBS_cad
2R	19158032	2R_19158032_SNP [dm3] 2R_23270509_SNP [dm6]	T	C	3.743e^-5	0.639	START_LOST CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
3R	26163410	3R_26163410_SNP [dm3] 3R_30337688_SNP [dm6]	G	A	3.765e^-5	0.639	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7692172	2R_7692172_SNP [dm3] 2R_11804667_SNP [dm6]	A	G	3.786e^-5	0.639	INTRON ths	TF binding site mE1_TFBS_cad
X	16400817	X_16400817_DEL [dm3] X_16506784_DEL [dm6]	GTATG	G	3.792e^-5	0.639	INTRON para
2R	19380101	2R_19380101_SNP [dm3] 2R_23492578_SNP [dm6]	G	C	3.809e^-5	0.639	DOWNSTREAM CG43795 INTERGENIC
2L	2124854	2L_2124854_SNP [dm3] 2L_2124854_SNP [dm6]	C	T	3.810e^-5	0.639	INTERGENIC
2R	10443702	2R_10443702_SNP [dm3] 2R_14556197_SNP [dm6]	T	A	3.829e^-5	0.639	INTRON ttv
3R	25771727	3R_25771727_SNP [dm3] 3R_29946005_SNP [dm6]	C	T	3.849e^-5	0.639	SYNONYMOUS_CODING CG15523
3L	19097011	3L_19097011_SNP [dm3] 3L_19103911_SNP [dm6]	G	T	3.890e^-5	0.639	INTERGENIC
3R	2674822	3R_2674822_SNP [dm3] 3R_6849100_SNP [dm6]	G	C	3.951e^-5	0.639	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19108997	3L_19108997_SNP [dm3] 3L_19115897_SNP [dm6]	G	A	3.985e^-5	0.639	INTRON CG14082
3L	1759152	3L_1759152_SNP [dm3] 3L_1759152_SNP [dm6]	C	A	4.016e^-5	0.639	UTR_3_PRIME CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9204791	X_9204791_SNP [dm3] X_9310758_SNP [dm6]	G	T	4.093e^-5	0.639	INTERGENIC
X	9831508	X_9831508_SNP [dm3] X_9937475_SNP [dm6]	T	C	4.137e^-5	0.639	INTERGENIC
3L	3353803	3L_3353803_SNP [dm3] 3L_3353803_SNP [dm6]	T	G	4.186e^-5	0.639	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	18290522	2R_18290522_SNP [dm3] 2R_22403017_SNP [dm6]	G	T	4.208e^-5	0.639	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	23181953	3R_23181953_DEL [dm3] 3R_27356231_DEL [dm6]	CC	C	4.292e^-5	0.639	INTRON CG42534
2L	2495149	2L_2495149_SNP [dm3] 2L_2495149_SNP [dm6]	T	G	4.333e^-5	0.639	INTRON oaf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15589532	3L_15589532_SNP [dm3] 3L_15596432_SNP [dm6]	C	T	4.368e^-5	0.639	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22853866	3R_22853866_SNP [dm3] 3R_27028144_SNP [dm6]	G	A	4.383e^-5	0.639	SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13147927	3L_13147927_SNP [dm3] 3L_13154827_SNP [dm6]	T	G	4.396e^-5	0.639	INTERGENIC
3L	19120730	3L_19120730_SNP [dm3] 3L_19127630_SNP [dm6]	T	C	4.412e^-5	0.639	DOWNSTREAM Spn75F INTRON CG14082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17917261	2R_17917261_SNP [dm3] 2R_22029756_SNP [dm6]	C	T	4.483e^-5	0.639	INTRON CG34370
2L	13549281	2L_13549281_SNP [dm3] 2L_13549281_SNP [dm6]	G	A	4.527e^-5	0.639	UTR_5_PRIME B4 UPSTREAM kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	12650120	X_12650120_DEL [dm3] X_12756087_DEL [dm6]	TTTTTC	ACAA	4.598e^-5	0.639	DOWNSTREAM ade5 INTERGENIC
3L	19125197	3L_19125197_SNP [dm3] 3L_19132097_SNP [dm6]	A	T	4.658e^-5	0.639	INTRON CG14082
2R	7526582	2R_7526582_SNP [dm3] 2R_11639077_SNP [dm6]	C	T	4.698e^-5	0.639	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25771709	3R_25771709_SNP [dm3] 3R_29945987_SNP [dm6]	A	G	4.700e^-5	0.639	SYNONYMOUS_CODING CG15523
2L	12092867	2L_12092867_SNP [dm3] 2L_12092867_SNP [dm6]	G	A	4.786e^-5	0.639	UPSTREAM CR44594 & 1 other INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3770614	3R_3770614_SNP [dm3] 3R_7944892_SNP [dm6]	T	A	4.838e^-5	0.639	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10032419	2R_10032419_SNP [dm3] 2R_14144914_SNP [dm6]	G	A	4.874e^-5	0.639	DOWNSTREAM mir-989 INTERGENIC
2L	17962887	2L_17962887_SNP [dm3] 2L_17962887_SNP [dm6]	A	G	4.899e^-5	0.639	NON_SYNONYMOUS_CODING btv UPSTREAM CG5674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	11311210	2R_11311210_SNP [dm3] 2R_15423705_SNP [dm6]	C	T	4.928e^-5	0.639	SYNONYMOUS_CODING CG30472 INTRON CG43729
2R	18290506	2R_18290506_SNP [dm3] 2R_22403001_SNP [dm6]	C	T	5.041e^-5	0.639	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	17131903	2L_17131903_SNP [dm3] 2L_17131903_SNP [dm6]	C	T	5.046e^-5	0.639	INTRON beat-IIIa & 1 other
3L	17410571	3L_17410571_SNP [dm3] 3L_17417471_SNP [dm6]	C	T	5.062e^-5	0.639	INTRON blot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	5552609	2L_5552609_SNP [dm3] 2L_5552609_SNP [dm6]	G	C	5.110e^-5	0.639	NON_SYNONYMOUS_CODING CG18269 DOWNSTREAM CG14013
3R	24307048	3R_24307048_INS [dm3] 3R_28481326_INS [dm6]	T	TGAAGGTACGACAGCGT...	5.147e^-5	0.639	INTERGENIC
X	2789759	X_2789759_SNP [dm3] X_2895726_SNP [dm6]	C	G	5.176e^-5	0.639	INTRON kirre
3R	24459633	3R_24459633_SNP [dm3] 3R_28633911_SNP [dm6]	T	C	5.234e^-5	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
3R	24306947	3R_24306947_SNP [dm3] 3R_28481225_SNP [dm6]	C	T	5.238e^-5	0.639	INTERGENIC
3L	8363723	3L_8363723_SNP [dm3] 3L_8370623_SNP [dm6]	C	T	5.280e^-5	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10032414	2R_10032414_SNP [dm3] 2R_14144909_SNP [dm6]	G	T	5.287e^-5	0.639	DOWNSTREAM mir-989 INTERGENIC
2R	19439578	2R_19439578_SNP [dm3] 2R_23552055_SNP [dm6]	A	G	5.366e^-5	0.639	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24306951	3R_24306951_SNP [dm3] 3R_28481229_SNP [dm6]	C	A	5.372e^-5	0.639	INTERGENIC
2R	4522123	2R_4522123_INS [dm3] 2R_8634618_INS [dm6]	G	AT	5.395e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18752590	2R_18752590_SNP [dm3] 2R_22865067_SNP [dm6]	A	G	5.485e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18924343	3L_18924343_SNP [dm3] 3L_18931243_SNP [dm6]	C	A	5.524e^-5	0.639	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	2494014	2L_2494014_SNP [dm3] 2L_2494014_SNP [dm6]	T	G	5.538e^-5	0.639	INTRON oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19110164	3L_19110164_SNP [dm3] 3L_19117064_SNP [dm6]	T	C	5.538e^-5	0.639	INTRON CG14082
3L	12090619	3L_12090619_SNP [dm3] 3L_12097519_SNP [dm6]	G	A	5.565e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	649995	3L_649995_SNP [dm3] 3L_649995_SNP [dm6]	G	A	5.579e^-5	0.639	INTRON Gale	TF binding site mE1_TFBS_chinmo
2R	10032420	2R_10032420_INS [dm3] 2R_14144915_INS [dm6]	G	GAGT	5.580e^-5	0.639	DOWNSTREAM mir-989 INTERGENIC
3L	19108445	3L_19108445_SNP [dm3] 3L_19115345_SNP [dm6]	C	T	5.582e^-5	0.639	INTRON CG14082
2L	17107064	2L_17107064_SNP [dm3] 2L_17107064_SNP [dm6]	C	A	5.675e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19434107	2R_19434107_SNP [dm3] 2R_23546584_SNP [dm6]	G	A	5.689e^-5	0.639	INTRON wmd	TF binding site BDTNP1_TFBS_dl
3L	18270657	3L_18270657_SNP [dm3] 3L_18277557_SNP [dm6]	A	C	5.718e^-5	0.639	INTERGENIC
2L	17131839	2L_17131839_SNP [dm3] 2L_17131839_SNP [dm6]	T	A	5.874e^-5	0.639	INTRON beat-IIIa & 1 other
3R	23039059	3R_23039059_SNP [dm3] 3R_27213337_SNP [dm6]	C	T	5.933e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9195011	3R_9195011_SNP [dm3] 3R_13369289_SNP [dm6]	T	A	5.957e^-5	0.639	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
3R	23182156	3R_23182156_INS [dm3] 3R_27356434_INS [dm6]	A	AAGCCCCA	5.978e^-5	0.639	INTRON CG42534
3R	17077298	3R_17077298_SNP [dm3] 3R_21251576_SNP [dm6]	A	G	5.983e^-5	0.639	INTRON ETHR
2R	11457149	2R_11457149_SNP [dm3] 2R_15569644_SNP [dm6]	A	C	6.020e^-5	0.639	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25133452	3R_25133452_SNP [dm3] 3R_29307730_SNP [dm6]	G	A	6.098e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17437024	3L_17437024_SNP [dm3] 3L_17443924_SNP [dm6]	A	G	6.121e^-5	0.639	INTRON CG18265	TF binding site BDTNP1_TFBS_twi
3R	25008346	3R_25008346_SNP [dm3] 3R_29182624_SNP [dm6]	A	G	6.129e^-5	0.639	INTRON CG14509
3R	26560871	3R_26560871_SNP [dm3] 3R_30735149_SNP [dm6]	C	T	6.147e^-5	0.639	INTERGENIC
3L	19097502	3L_19097502_SNP [dm3] 3L_19104402_SNP [dm6]	G	C	6.289e^-5	0.639	DOWNSTREAM CG14082 INTERGENIC
2R	17336834	2R_17336834_SNP [dm3] 2R_21449329_SNP [dm6]	T	A	6.362e^-5	0.639	INTRON Sdc
2L	17131849	2L_17131849_SNP [dm3] 2L_17131849_SNP [dm6]	G	T	6.383e^-5	0.639	INTRON beat-IIIa & 1 other
2L	6535198	2L_6535198_SNP [dm3] 2L_6535198_SNP [dm6]	A	G	6.420e^-5	0.639	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	12090620	3L_12090620_SNP [dm3] 3L_12097520_SNP [dm6]	T	C	6.467e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16880906	3R_16880906_SNP [dm3] 3R_21055184_SNP [dm6]	G	A	6.483e^-5	0.639	INTRON Mvl
3R	25771589	3R_25771589_SNP [dm3] 3R_29945867_SNP [dm6]	T	C	6.535e^-5	0.639	INTRON CG15523
2L	17131642	2L_17131642_SNP [dm3] 2L_17131642_SNP [dm6]	C	A	6.608e^-5	0.639	INTRON beat-IIIa & 1 other
3L	12876930	3L_12876930_SNP [dm3] 3L_12883830_SNP [dm6]	T	C	6.692e^-5	0.639	INTERGENIC
2R	12259291	2R_12259291_SNP [dm3] 2R_16371786_SNP [dm6]	A	G	6.699e^-5	0.639	INTERGENIC
3R	22017833	3R_22017833_SNP [dm3] 3R_26192111_SNP [dm6]	A	T	6.700e^-5	0.639	UPSTREAM CG34129 INTERGENIC
3L	19097378	3L_19097378_SNP [dm3] 3L_19104278_SNP [dm6]	C	T	6.704e^-5	0.639	INTERGENIC
2R	19370364	2R_19370364_SNP [dm3] 2R_23482841_SNP [dm6]	C	T	6.758e^-5	0.639	INTRON CG43795
X	4296992	X_4296992_SNP [dm3] X_4402959_SNP [dm6]	C	T	6.835e^-5	0.639	INTRON CR32773	TF binding site mE1_TFBS_bab1
2R	16824077	2R_16824077_SNP [dm3] 2R_20936572_SNP [dm6]	T	C	6.869e^-5	0.639	NON_SYNONYMOUS_CODING Rx
3L	5099872	3L_5099872_SNP [dm3] 3L_5099872_SNP [dm6]	G	A	6.912e^-5	0.639	UPSTREAM CR34047 INTERGENIC
3R	24306994	3R_24306994_SNP [dm3] 3R_28481272_SNP [dm6]	A	G	6.957e^-5	0.639	INTERGENIC
2R	17278519	2R_17278519_SNP [dm3] 2R_21391014_SNP [dm6]	A	G	6.990e^-5	0.639	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17414386	3L_17414386_SNP [dm3] 3L_17421286_SNP [dm6]	A	T	7.009e^-5	0.639	DOWNSTREAM Sec3 INTRON blot	TF binding site mE1_TFBS_Trl
2R	14014985	2R_14014985_SNP [dm3] 2R_18127480_SNP [dm6]	T	C	7.028e^-5	0.639	INTRON Spn55B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	2494957	2L_2494957_SNP [dm3] 2L_2494957_SNP [dm6]	G	T	7.038e^-5	0.639	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4859256	2L_4859256_SNP [dm3] 2L_4859256_SNP [dm6]	C	T	7.149e^-5	0.639	INTRON pog
3L	18270653	3L_18270653_SNP [dm3] 3L_18277553_SNP [dm6]	A	G	7.247e^-5	0.639	INTERGENIC
2R	10032436	2R_10032436_SNP [dm3] 2R_14144931_SNP [dm6]	G	T	7.310e^-5	0.639	DOWNSTREAM mir-989 INTERGENIC
3R	12455156	3R_12455156_SNP [dm3] 3R_16629434_SNP [dm6]	T	A	7.358e^-5	0.639	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2674838	3R_2674838_SNP [dm3] 3R_6849116_SNP [dm6]	T	A	7.362e^-5	0.639	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	649909	3L_649909_SNP [dm3] 3L_649909_SNP [dm6]	C	T	7.389e^-5	0.639	INTRON Gale	TF binding site mE1_TFBS_chinmo
2L	2110931	2L_2110931_SNP [dm3] 2L_2110931_SNP [dm6]	T	A	7.440e^-5	0.639	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	19092167	3L_19092167_SNP [dm3] 3L_19099067_SNP [dm6]	G	A	7.546e^-5	0.639	DOWNSTREAM Gem2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	24307009	3R_24307009_SNP [dm3] 3R_28481287_SNP [dm6]	A	T	7.566e^-5	0.639	INTERGENIC
2R	14187906	2R_14187906_SNP [dm3] 2R_18300401_SNP [dm6]	C	A	7.650e^-5	0.639	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22885499	3R_22885499_SNP [dm3] 3R_27059777_SNP [dm6]	T	A	7.692e^-5	0.639	SYNONYMOUS_CODING Nep5
X	5613245	X_5613245_SNP [dm3] X_5719212_SNP [dm6]	T	G	7.693e^-5	0.639	DOWNSTREAM CG32758 INTERGENIC
2L	8063258	2L_8063258_SNP [dm3] 2L_8063258_SNP [dm6]	G	T	7.698e^-5	0.639	SYNONYMOUS_CODING poe
2R	19380532	2R_19380532_SNP [dm3] 2R_23493009_SNP [dm6]	A	G	7.737e^-5	0.639	INTERGENIC
3R	2668629	3R_2668629_SNP [dm3] 3R_6842907_SNP [dm6]	T	A	7.754e^-5	0.639	INTRON Scr	regulatory region FlyBase REDfly_CRMs
3L	1735114	3L_1735114_SNP [dm3] 3L_1735114_SNP [dm6]	G	A	7.840e^-5	0.639	SYNONYMOUS_CODING Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17132182	2L_17132182_SNP [dm3] 2L_17132182_SNP [dm6]	A	G	7.842e^-5	0.639	INTRON beat-IIIa & 1 other
3R	7632221	3R_7632221_SNP [dm3] 3R_11806499_SNP [dm6]	G	T	7.882e^-5	0.639	UTR_5_PRIME ClC-a INTRON ClC-a	TF binding site mE1_TFBS_HSA
X	19790034	X_19790034_SNP [dm3] X_19896001_SNP [dm6]	G	A	7.910e^-5	0.639	INTRON Hers	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2682990	3R_2682990_SNP [dm3] 3R_6857268_SNP [dm6]	C	A	7.921e^-5	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22731752	3R_22731752_SNP [dm3] 3R_26906030_SNP [dm6]	C	A	7.926e^-5	0.639	INTRON T48	regulatory region REDfly_CRMs
X	16401340	X_16401340_SNP [dm3] X_16507307_SNP [dm6]	A	T	7.961e^-5	0.639	INTRON para
3L	10551899	3L_10551899_SNP [dm3] 3L_10558799_SNP [dm6]	T	G	7.988e^-5	0.639	INTRON A2bp1 & 1 other
X	2799026	X_2799026_SNP [dm3] X_2904993_SNP [dm6]	A	T	8.036e^-5	0.639	INTRON kirre
3R	7632249	3R_7632249_INS [dm3] 3R_11806527_INS [dm6]	C	CA	8.153e^-5	0.639	UTR_5_PRIME ClC-a INTRON ClC-a
3L	17395433	3L_17395433_SNP [dm3] 3L_17402333_SNP [dm6]	T	C	8.238e^-5	0.639	UPSTREAM noe INTRON blot
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	8.250e^-5	0.639	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7692198	2R_7692198_SNP [dm3] 2R_11804693_SNP [dm6]	G	A	8.259e^-5	0.639	INTRON ths
2R	10032473	2R_10032473_SNP [dm3] 2R_14144968_SNP [dm6]	G	A	8.365e^-5	0.639	DOWNSTREAM mir-989 INTERGENIC
3R	12152629	3R_12152629_SNP [dm3] 3R_16326907_SNP [dm6]	C	G	8.420e^-5	0.639	NON_SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
3R	25430830	3R_25430830_SNP [dm3] 3R_29605108_SNP [dm6]	A	G	8.440e^-5	0.639	INTRON alph
2L	17130348	2L_17130348_SNP [dm3] 2L_17130348_SNP [dm6]	T	A	8.441e^-5	0.639	UPSTREAM beat-IIIa & 1 other INTERGENIC
2L	2495800	2L_2495800_SNP [dm3] 2L_2495800_SNP [dm6]	C	A	8.472e^-5	0.639	SYNONYMOUS_CODING oaf
3L	17474333	3L_17474333_SNP [dm3] 3L_17481233_SNP [dm6]	G	T	8.582e^-5	0.639	START_GAINED CG6333 UTR_5_PRIME CG6333 INTRON CG6333
3L	2155240	3L_2155240_SNP [dm3] 3L_2155240_SNP [dm6]	C	A	8.594e^-5	0.639	NON_SYNONYMOUS_CODING CG15822 INTRON CG15822
2L	9794793	2L_9794793_SNP [dm3] 2L_9794793_SNP [dm6]	A	G	8.598e^-5	0.639	UTR_3_PRIME nAChRalpha6
3R	3497256	3R_3497256_SNP [dm3] 3R_7671534_SNP [dm6]	C	A	8.617e^-5	0.639	INTRON Nlg1
3L	2026716	3L_2026716_SNP [dm3] 3L_2026716_SNP [dm6]	G	A	8.617e^-5	0.639	UPSTREAM CG34259 INTERGENIC
3L	10023291	3L_10023291_SNP [dm3] 3L_10030191_SNP [dm6]	T	C	8.648e^-5	0.639	UPSTREAM CR45155 INTRON dpr6
3L	5962286	3L_5962286_SNP [dm3] 3L_5969186_SNP [dm6]	C	A	8.653e^-5	0.639	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2549719	3L_2549719_SNP [dm3] 3L_2549719_SNP [dm6]	T	A	8.664e^-5	0.639	INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17769329	3L_17769329_SNP [dm3] 3L_17776229_SNP [dm6]	T	G	8.693e^-5	0.639	INTERGENIC
X	10047643	X_10047643_SNP [dm3] X_10153610_SNP [dm6]	G	T	8.875e^-5	0.639	UPSTREAM CG12645 INTRON CR44894
3R	25318682	3R_25318682_INS [dm3] 3R_29492960_INS [dm6]	T	TGGT	8.945e^-5	0.639	UPSTREAM Diedel INTRON CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2R	7692199	2R_7692199_SNP [dm3] 2R_11804694_SNP [dm6]	A	G	8.948e^-5	0.639	INTRON ths
2R	18044021	2R_18044021_SNP [dm3] 2R_22156516_SNP [dm6]	C	T	8.952e^-5	0.639	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	11311213	2R_11311213_SNP [dm3] 2R_15423708_SNP [dm6]	C	T	8.962e^-5	0.639	SYNONYMOUS_CODING CG30472 INTRON CG43729
2R	9474420	2R_9474420_SNP [dm3] 2R_13586915_SNP [dm6]	A	G	8.964e^-5	0.639	INTRON CG6191 & 1 other
2R	16227068	2R_16227068_SNP [dm3] 2R_20339563_SNP [dm6]	C	A	8.980e^-5	0.639	INTERGENIC
3R	17705078	3R_17705078_SNP [dm3] 3R_21879356_SNP [dm6]	T	A	9.000e^-5	0.639	NON_SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site mE1_TFBS_sens
3L	12270576	3L_12270576_SNP [dm3] 3L_12277476_SNP [dm6]	T	C	9.029e^-5	0.639	UPSTREAM CG10426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4859283	2L_4859283_SNP [dm3] 2L_4859283_SNP [dm6]	A	G	9.098e^-5	0.639	INTRON pog
2L	10532627	2L_10532627_SNP [dm3] 2L_10532627_SNP [dm6]	C	G	9.164e^-5	0.639	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
3L	5100673	3L_5100673_SNP [dm3] 3L_5100673_SNP [dm6]	G	A	9.183e^-5	0.639	UPSTREAM CR34047 INTERGENIC
2L	2494024	2L_2494024_SNP [dm3] 2L_2494024_SNP [dm6]	C	G	9.232e^-5	0.639	INTRON oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26495405	3R_26495405_SNP [dm3] 3R_30669683_SNP [dm6]	T	C	9.274e^-5	0.639	INTERGENIC
3L	6855346	3L_6855346_SNP [dm3] 3L_6862246_SNP [dm6]	A	T	9.288e^-5	0.639	INTERGENIC
2L	5003299	2L_5003299_SNP [dm3] 2L_5003299_SNP [dm6]	G	C	9.298e^-5	0.639	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	19343739	2R_19343739_SNP [dm3] 2R_23456216_SNP [dm6]	C	A	9.310e^-5	0.639	UTR_5_PRIME CG43795
2R	19497825	2R_19497825_SNP [dm3] 2R_23610302_SNP [dm6]	A	T	9.342e^-5	0.639	UPSTREAM CG4019 INTRON CG17664 & 1 other
X	2799025	X_2799025_SNP [dm3] X_2904992_SNP [dm6]	T	A	9.385e^-5	0.639	INTRON kirre
2L	1433218	2L_1433218_SNP [dm3] 2L_1433218_SNP [dm6]	T	A	9.426e^-5	0.639	DOWNSTREAM snRNA:U3:22A INTERGENIC
3L	22284679	3L_22284679_SNP [dm3] 3L_22291579_SNP [dm6]	C	T	9.471e^-5	0.639	NON_SYNONYMOUS_CODING Aats-ile
3R	19132295	3R_19132295_SNP [dm3] 3R_23306573_SNP [dm6]	G	A	9.475e^-5	0.639	INTRON pnt
3R	11140117	3R_11140117_SNP [dm3] 3R_15314395_SNP [dm6]	C	T	9.561e^-5	0.639	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	651815	3L_651815_SNP [dm3] 3L_651815_SNP [dm6]	A	G	9.569e^-5	0.639	UTR_3_PRIME CG3402 DOWNSTREAM Gale	TF binding site BDTNP1_TFBS_dl
3R	26494407	3R_26494407_SNP [dm3] 3R_30668685_SNP [dm6]	C	T	9.644e^-5	0.639	INTERGENIC
3R	23181721	3R_23181721_SNP [dm3] 3R_27355999_SNP [dm6]	A	C	9.696e^-5	0.639	INTRON CG42534
3L	3014213	3L_3014213_SNP [dm3] 3L_3014213_SNP [dm6]	A	G	9.697e^-5	0.639	DOWNSTREAM CG32488 INTERGENIC
3R	24459920	3R_24459920_SNP [dm3] 3R_28634198_SNP [dm6]	A	G	9.729e^-5	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	4685619	2R_4685619_SNP [dm3] 2R_8798114_SNP [dm6]	C	G	9.761e^-5	0.639	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2110932	2L_2110932_SNP [dm3] 2L_2110932_SNP [dm6]	T	C	9.783e^-5	0.639	INTERGENIC	TF binding site mE1_TFBS_bab1
X	18730312	X_18730312_SNP [dm3] X_18836279_SNP [dm6]	T	G	9.864e^-5	0.639	INTRON Pvf1
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	9.906e^-5	0.639	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12776026	2L_12776026_SNP [dm3] 2L_12776026_SNP [dm6]	A	T	9.921e^-5	0.639	INTERGENIC
3L	19127813	3L_19127813_DEL [dm3] 3L_19134713_DEL [dm6]	TAA	T	9.930e^-5	0.639	INTRON CG14082
3R	23182182	3R_23182182_SNP [dm3] 3R_27356460_SNP [dm6]	G	A	9.997e^-5	0.639	INTRON CG42534
3R	25151543	3R_25151543_SNP [dm3] 3R_29325821_SNP [dm6]	A	G	1.011e^-4	0.639	INTERGENIC
3R	24307024	3R_24307024_SNP [dm3] 3R_28481302_SNP [dm6]	C	T	1.012e^-4	0.639	INTERGENIC
3R	19657046	3R_19657046_SNP [dm3] 3R_23831324_SNP [dm6]	C	G	1.013e^-4	0.639	INTRON CG34355
3R	19411524	3R_19411524_SNP [dm3] 3R_23585802_SNP [dm6]	G	A	1.017e^-4	0.639	INTERGENIC
3R	24747699	3R_24747699_SNP [dm3] 3R_28921977_SNP [dm6]	C	T	1.022e^-4	0.639	UTR_3_PRIME Doa DOWNSTREAM Doa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19098002	3L_19098002_SNP [dm3] 3L_19104902_SNP [dm6]	A	T	1.024e^-4	0.639	DOWNSTREAM CG14082 INTERGENIC
3R	24307073	3R_24307073_SNP [dm3] 3R_28481351_SNP [dm6]	G	A	1.027e^-4	0.639	INTERGENIC
3L	14683817	3L_14683817_SNP [dm3] 3L_14690717_SNP [dm6]	C	T	1.032e^-4	0.639	UPSTREAM CG13477 INTRON ome
3L	7845495	3L_7845495_SNP [dm3] 3L_7852395_SNP [dm6]	T	A	1.034e^-4	0.639	INTRON Pdp1
3R	21347145	3R_21347145_SNP [dm3] 3R_25521423_SNP [dm6]	A	C	1.036e^-4	0.639	INTRON msi
3R	15639670	3R_15639670_SNP [dm3] 3R_19813948_SNP [dm6]	C	T	1.039e^-4	0.639	INTRON bnl
X	2239041	X_2239041_DEL [dm3] X_2345008_DEL [dm6]	CA	C	1.041e^-4	0.639	UTR_3_PRIME ptr UPSTREAM mRpL14 DOWNSTREAM ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9613886	3L_9613886_SNP [dm3] 3L_9620786_SNP [dm6]	T	A	1.058e^-4	0.639	NON_SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18747542	2R_18747542_SNP [dm3] 2R_22860019_SNP [dm6]	C	T	1.060e^-4	0.639	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19039575	2R_19039575_SNP [dm3] 2R_23152052_SNP [dm6]	C	T	1.062e^-4	0.639	UPSTREAM CG43207 INTERGENIC
3L	10023222	3L_10023222_SNP [dm3] 3L_10030122_SNP [dm6]	A	G	1.070e^-4	0.639	INTRON dpr6 EXON CR45155
2L	13549344	2L_13549344_SNP [dm3] 2L_13549344_SNP [dm6]	C	T	1.072e^-4	0.639	UPSTREAM kuz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22154467	3L_22154467_SNP [dm3] 3L_22161367_SNP [dm6]	A	G	1.072e^-4	0.639	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19358676	2R_19358676_SNP [dm3] 2R_23471153_SNP [dm6]	G	A	1.086e^-4	0.639	SYNONYMOUS_CODING Or59b INTRON CG43795
3R	3628838	3R_3628838_SNP [dm3] 3R_7803116_SNP [dm6]	G	A	1.086e^-4	0.639	NON_SYNONYMOUS_CODING CG18268 UPSTREAM CG3014
3L	8363544	3L_8363544_SNP [dm3] 3L_8370444_SNP [dm6]	A	T	1.094e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9815208	2R_9815208_SNP [dm3] 2R_13927703_SNP [dm6]	T	A	1.094e^-4	0.639	INTRON shot	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19123066	3L_19123066_SNP [dm3] 3L_19129966_SNP [dm6]	G	T	1.095e^-4	0.639	UPSTREAM Spn75F INTRON CG14082
2L	12802211	2L_12802211_SNP [dm3] 2L_12802211_SNP [dm6]	A	T	1.096e^-4	0.639	INTERGENIC
3L	2026841	3L_2026841_SNP [dm3] 3L_2026841_SNP [dm6]	A	C	1.100e^-4	0.639	UPSTREAM CG34259 INTERGENIC
3L	9083880	3L_9083880_SNP [dm3] 3L_9090780_SNP [dm6]	C	T	1.110e^-4	0.639	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad
3L	19082168	3L_19082168_SNP [dm3] 3L_19089068_SNP [dm6]	G	A	1.113e^-4	0.639	INTERGENIC
X	16400824	X_16400824_SNP [dm3] X_16506791_SNP [dm6]	G	C	1.115e^-4	0.639	INTRON para
3R	15740096	3R_15740096_SNP [dm3] 3R_19914374_SNP [dm6]	G	A	1.118e^-4	0.639	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
2R	18562644	2R_18562644_SNP [dm3] 2R_22675139_SNP [dm6]	A	G	1.119e^-4	0.639	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	10661586	2L_10661586_SNP [dm3] 2L_10661586_SNP [dm6]	G	T	1.127e^-4	0.639	UPSTREAM CG31871 INTERGENIC
3R	9706195	3R_9706195_SNP [dm3] 3R_13880473_SNP [dm6]	T	A	1.129e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	7534901	X_7534901_SNP [dm3] X_7640868_SNP [dm6]	T	A	1.134e^-4	0.639	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24632489	3R_24632489_SNP [dm3] 3R_28806767_SNP [dm6]	C	T	1.136e^-4	0.639	SYNONYMOUS_CODING CheB98a
2R	19366724	2R_19366724_SNP [dm3] 2R_23479201_SNP [dm6]	C	T	1.138e^-4	0.639	INTRON CG43795
2R	19366725	2R_19366725_SNP [dm3] 2R_23479202_SNP [dm6]	T	C	1.138e^-4	0.639	INTRON CG43795
3R	2683054	3R_2683054_SNP [dm3] 3R_6857332_SNP [dm6]	T	C	1.146e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17918482	2L_17918482_SNP [dm3] 2L_17918482_SNP [dm6]	C	G	1.152e^-4	0.639	DOWNSTREAM CR43274 INTERGENIC
3R	19418624	3R_19418624_SNP [dm3] 3R_23592902_SNP [dm6]	G	A	1.154e^-4	0.639	UPSTREAM CG33337 DOWNSTREAM CG16723 INTERGENIC
3L	10023364	3L_10023364_SNP [dm3] 3L_10030264_SNP [dm6]	C	A	1.157e^-4	0.639	UPSTREAM CR45155 INTRON dpr6
3L	17337668	3L_17337668_SNP [dm3] 3L_17344568_SNP [dm6]	G	A	1.157e^-4	0.639	SYNONYMOUS_CODING brv2 DOWNSTREAM Mip
2R	7692266	2R_7692266_SNP [dm3] 2R_11804761_SNP [dm6]	T	C	1.160e^-4	0.639	INTRON ths
2R	7139755	2R_7139755_SNP [dm3] 2R_11252250_SNP [dm6]	G	T	1.165e^-4	0.639	SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da
2L	11194424	2L_11194424_SNP [dm3] 2L_11194424_SNP [dm6]	A	G	1.167e^-4	0.639	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	1.181e^-4	0.639	SYNONYMOUS_CODING CG14820
3L	9615619	3L_9615619_SNP [dm3] 3L_9622519_SNP [dm6]	C	T	1.183e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17033274	3R_17033274_SNP [dm3] 3R_21207552_SNP [dm6]	A	C	1.194e^-4	0.639	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	25855159	3R_25855159_SNP [dm3] 3R_30029437_SNP [dm6]	C	G	1.201e^-4	0.639	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24459627	3R_24459627_SNP [dm3] 3R_28633905_SNP [dm6]	A	T	1.201e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
2R	18276515	2R_18276515_SNP [dm3] 2R_22389010_SNP [dm6]	T	G	1.207e^-4	0.639	INTRON CG13506
2L	2110938	2L_2110938_SNP [dm3] 2L_2110938_SNP [dm6]	T	C	1.213e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	19086758	3L_19086758_SNP [dm3] 3L_19093658_SNP [dm6]	C	T	1.213e^-4	0.639	INTRON MESR6	TF binding site mE1_TFBS_cad
2R	18562709	2R_18562709_SNP [dm3] 2R_22675204_SNP [dm6]	C	T	1.215e^-4	0.639	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	6903710	2L_6903710_SNP [dm3] 2L_6903710_SNP [dm6]	C	A	1.215e^-4	0.639	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad
2R	6555574	2R_6555574_SNP [dm3] 2R_10668069_SNP [dm6]	A	T	1.220e^-4	0.639	INTERGENIC
2L	17132992	2L_17132992_SNP [dm3] 2L_17132992_SNP [dm6]	A	C	1.225e^-4	0.639	INTRON beat-IIIa & 1 other
3L	9613926	3L_9613926_SNP [dm3] 3L_9620826_SNP [dm6]	T	C	1.228e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13226604	3R_13226604_DEL [dm3] 3R_17400882_DEL [dm6]	AGCTTTCAGC	A	1.232e^-4	0.639	INTRON Sur-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	17033285	3R_17033285_SNP [dm3] 3R_21207563_SNP [dm6]	C	A	1.233e^-4	0.639	UPSTREAM SNF4Agamma INTRON SNF4Agamma
2R	17824404	2R_17824404_SNP [dm3] 2R_21936899_SNP [dm6]	C	T	1.234e^-4	0.639	UPSTREAM CG43742 INTRON Fili
2R	4744287	2R_4744287_SNP [dm3] 2R_8856782_SNP [dm6]	C	A	1.235e^-4	0.639	DOWNSTREAM sns INTERGENIC
2R	3493779	2R_3493779_SNP [dm3] 2R_7606274_SNP [dm6]	A	G	1.236e^-4	0.639	INTRON CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10443787	2R_10443787_SNP [dm3] 2R_14556282_SNP [dm6]	A	G	1.239e^-4	0.639	INTRON ttv
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	1.241e^-4	0.639	INTERGENIC
2R	10032413	2R_10032413_SNP [dm3] 2R_14144908_SNP [dm6]	A	T	1.248e^-4	0.639	DOWNSTREAM mir-989 INTERGENIC
3L	1752097	3L_1752097_SNP [dm3] 3L_1752097_SNP [dm6]	A	G	1.251e^-4	0.639	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
3R	23506930	3R_23506930_SNP [dm3] 3R_27681208_SNP [dm6]	A	C	1.252e^-4	0.639	SYNONYMOUS_CODING Sce DOWNSTREAM CG12883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8132995	2R_8132995_SNP [dm3] 2R_12245490_SNP [dm6]	A	T	1.253e^-4	0.639	UPSTREAM CG43244 INTERGENIC
X	14786617	X_14786617_SNP [dm3] X_14892584_SNP [dm6]	A	T	1.256e^-4	0.639	INTRON Flo2 & 1 other
X	20461186	X_20461186_SNP [dm3] X_20590159_SNP [dm6]	T	C	1.266e^-4	0.639	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	19268712	3R_19268712_SNP [dm3] 3R_23442990_SNP [dm6]	C	T	1.268e^-4	0.639	INTRON CG4374
2R	4692547	2R_4692547_SNP [dm3] 2R_8805042_SNP [dm6]	A	T	1.271e^-4	0.639	INTRON sns
3L	14681176	3L_14681176_SNP [dm3] 3L_14688076_SNP [dm6]	T	C	1.271e^-4	0.639	INTRON ome
2R	9648655	2R_9648655_SNP [dm3] 2R_13761150_SNP [dm6]	G	C	1.276e^-4	0.639	INTERGENIC
3L	14682171	3L_14682171_SNP [dm3] 3L_14689071_SNP [dm6]	C	T	1.276e^-4	0.639	INTRON ome
2R	10396402	2R_10396402_DEL [dm3] 2R_14508897_DEL [dm6]	ATCAACA	A	1.279e^-4	0.639		TF binding site BDTNP1_TFBS_dl
2R	19359992	2R_19359992_SNP [dm3] 2R_23472469_SNP [dm6]	T	C	1.284e^-4	0.639	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo
2R	14683159	2R_14683159_SNP [dm3] 2R_18795654_SNP [dm6]	A	G	1.292e^-4	0.639	SYNONYMOUS_CODING MFS15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15193169	3R_15193169_SNP [dm3] 3R_19367447_SNP [dm6]	G	T	1.298e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	1483163	X_1483163_SNP [dm3] X_1589130_SNP [dm6]	C	A	1.303e^-4	0.639	INTRON br & 1 other
3R	22745453	3R_22745453_SNP [dm3] 3R_26919731_SNP [dm6]	G	A	1.305e^-4	0.639	INTRON sda	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22731749	3R_22731749_SNP [dm3] 3R_26906027_SNP [dm6]	T	G	1.313e^-4	0.639	INTRON T48	regulatory region REDfly_CRMs
2R	6808291	2R_6808291_SNP [dm3] 2R_10920786_SNP [dm6]	G	A	1.319e^-4	0.639	INTERGENIC
3R	22854767	3R_22854767_SNP [dm3] 3R_27029045_SNP [dm6]	G	A	1.320e^-4	0.639	INTRON RYa-R
3R	17705081	3R_17705081_SNP [dm3] 3R_21879359_SNP [dm6]	C	T	1.330e^-4	0.639	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site mE1_TFBS_sens
3R	3155908	3R_3155908_SNP [dm3] 3R_7330186_SNP [dm6]	G	C	1.333e^-4	0.639	INTERGENIC
3R	8398746	3R_8398746_INS [dm3] 3R_12573024_INS [dm6]	A	ATTGAG	1.343e^-4	0.639	INTRON Octbeta2R
2R	19359259	2R_19359259_SNP [dm3] 2R_23471736_SNP [dm6]	C	A	1.343e^-4	0.639	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2R	16723101	2R_16723101_SNP [dm3] 2R_20835596_SNP [dm6]	T	C	1.345e^-4	0.639	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	2673177	3R_2673177_SNP [dm3] 3R_6847455_SNP [dm6]	A	G	1.347e^-4	0.639	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25137632	3R_25137632_SNP [dm3] 3R_29311910_SNP [dm6]	C	G	1.347e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19366777	2R_19366777_SNP [dm3] 2R_23479254_SNP [dm6]	G	T	1.347e^-4	0.639	INTRON CG43795
3L	19092722	3L_19092722_SNP [dm3] 3L_19099622_SNP [dm6]	G	T	1.348e^-4	0.639	SYNONYMOUS_CODING Gem2 DOWNSTREAM CG14079	TF binding site mE1_TFBS_cad
2R	19566753	2R_19566753_SNP [dm3] 2R_23679230_SNP [dm6]	G	C	1.350e^-4	0.639	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
X	8776746	X_8776746_SNP [dm3] X_8882713_SNP [dm6]	C	T	1.353e^-4	0.639	INTRON Moe
X	19790027	X_19790027_SNP [dm3] X_19895994_SNP [dm6]	A	G	1.357e^-4	0.639	INTRON Hers	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7964470	2L_7964470_SNP [dm3] 2L_7964470_SNP [dm6]	T	G	1.367e^-4	0.639	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	18338839	3L_18338839_SNP [dm3] 3L_18345739_SNP [dm6]	A	T	1.372e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2L	972885	2L_972885_SNP [dm3] 2L_972885_SNP [dm6]	C	T	1.384e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1311901	2L_1311901_SNP [dm3] 2L_1311901_SNP [dm6]	A	C	1.386e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9765223	3L_9765223_SNP [dm3] 3L_9772123_SNP [dm6]	T	C	1.391e^-4	0.639	INTRON CG8177
3R	3775293	3R_3775293_SNP [dm3] 3R_7949571_SNP [dm6]	G	A	1.392e^-4	0.639	INTRON dsx
2L	15121035	2L_15121035_INS [dm3] 2L_15121035_INS [dm6]	T	TT	1.393e^-4	0.639	DOWNSTREAM CR43853 INTERGENIC
2L	11142927	2L_11142927_SNP [dm3] 2L_11142927_SNP [dm6]	C	T	1.395e^-4	0.639	INTRON Gyc32E
2L	11142929	2L_11142929_SNP [dm3] 2L_11142929_SNP [dm6]	A	G	1.395e^-4	0.639	INTRON Gyc32E
2R	7692177	2R_7692177_SNP [dm3] 2R_11804672_SNP [dm6]	A	T	1.397e^-4	0.639	INTRON ths	TF binding site mE1_TFBS_cad
3R	25855406	3R_25855406_SNP [dm3] 3R_30029684_SNP [dm6]	T	C	1.397e^-4	0.639	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	19419676	3R_19419676_SNP [dm3] 3R_23593954_SNP [dm6]	C	G	1.402e^-4	0.639	SYNONYMOUS_CODING CG16723
3L	19098000	3L_19098000_SNP [dm3] 3L_19104900_SNP [dm6]	C	T	1.403e^-4	0.639	DOWNSTREAM CG14082 INTERGENIC
2L	8335482	2L_8335482_SNP [dm3] 2L_8335482_SNP [dm6]	C	T	1.409e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18912286	2L_18912286_SNP [dm3] 2L_18912286_SNP [dm6]	A	G	1.411e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1632386	2L_1632386_SNP [dm3] 2L_1632386_SNP [dm6]	A	T	1.420e^-4	0.639	INTERGENIC
2R	16721033	2R_16721033_SNP [dm3] 2R_20833528_SNP [dm6]	A	G	1.426e^-4	0.639	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18704451	3R_18704451_SNP [dm3] 3R_22878729_SNP [dm6]	C	T	1.428e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14481388	3L_14481388_SNP [dm3] 3L_14488288_SNP [dm6]	A	C	1.429e^-4	0.639	INTRON bbg	TF binding site mE1_TFBS_cad
2L	1306898	2L_1306898_SNP [dm3] 2L_1306898_SNP [dm6]	G	T	1.434e^-4	0.639	INTERGENIC
3L	9615870	3L_9615870_INS [dm3] 3L_9622770_INS [dm6]	C	CTC	1.434e^-4	0.639	INTRON LanB2	TF binding site mE1_TFBS_cad
3L	9130735	3L_9130735_DEL [dm3] 3L_9137635_DEL [dm6]	GT	G	1.435e^-4	0.639	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	10436856	X_10436856_SNP [dm3] X_10542823_SNP [dm6]	G	T	1.454e^-4	0.639	INTRON spri
3R	22017816	3R_22017816_SNP [dm3] 3R_26192094_SNP [dm6]	A	G	1.454e^-4	0.639	UPSTREAM CG34129 INTERGENIC
2L	2895199	2L_2895199_SNP [dm3] 2L_2895199_SNP [dm6]	C	A	1.454e^-4	0.639	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5963421	3L_5963421_SNP [dm3] 3L_5970321_SNP [dm6]	A	G	1.455e^-4	0.639	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17130199	2L_17130199_SNP [dm3] 2L_17130199_SNP [dm6]	A	T	1.458e^-4	0.639	UPSTREAM beat-IIIa & 1 other INTERGENIC
3R	17566533	3R_17566533_DEL [dm3] 3R_21740811_DEL [dm6]	CCC	C	1.463e^-4	0.639	INTRON CG5849
2L	6070834	2L_6070834_INS [dm3] 2L_6070834_INS [dm6]	A	AACGTATTTATAA...	1.465e^-4	0.639	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	4522189	2R_4522189_SNP [dm3] 2R_8634684_SNP [dm6]	A	G	1.467e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2026846	3L_2026846_SNP [dm3] 3L_2026846_SNP [dm6]	T	A	1.476e^-4	0.639	UPSTREAM CG34259 INTERGENIC
2L	10532061	2L_10532061_MNP [dm3] 2L_10532061_MNP [dm6]	TCT	ATC	1.479e^-4	0.639	DOWNSTREAM Lip4 INTRON CG18301
2L	14657389	2L_14657389_SNP [dm3] 2L_14657389_SNP [dm6]	T	G	1.480e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
3R	23857206	3R_23857206_SNP [dm3] 3R_28031484_SNP [dm6]	T	G	1.483e^-4	0.639	INTRON CG34362
3L	18149202	3L_18149202_SNP [dm3] 3L_18156102_SNP [dm6]	T	C	1.487e^-4	0.639	SYNONYMOUS_CODING CG13699
3L	19092354	3L_19092354_SNP [dm3] 3L_19099254_SNP [dm6]	C	G	1.488e^-4	0.639	UTR_3_PRIME Gem2 DOWNSTREAM CG14079
2L	1947150	2L_1947150_DEL [dm3] 2L_1947150_DEL [dm6]	CG	C	1.489e^-4	0.639	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	5205358	2R_5205358_SNP [dm3] 2R_9317853_SNP [dm6]	G	T	1.489e^-4	0.639	SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2910692	2L_2910692_SNP [dm3] 2L_2910692_SNP [dm6]	G	T	1.490e^-4	0.639	INTRON lilli
3L	14885806	3L_14885806_SNP [dm3] 3L_14892706_SNP [dm6]	A	C	1.494e^-4	0.639	INTERGENIC
2L	2124857	2L_2124857_SNP [dm3] 2L_2124857_SNP [dm6]	C	A	1.495e^-4	0.639	INTERGENIC
3L	6982328	3L_6982328_SNP [dm3] 3L_6989228_SNP [dm6]	G	A	1.499e^-4	0.639	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18695687	3L_18695687_SNP [dm3] 3L_18702587_SNP [dm6]	C	G	1.500e^-4	0.639	INTERGENIC
3L	19120340	3L_19120340_SNP [dm3] 3L_19127240_SNP [dm6]	T	A	1.504e^-4	0.639	INTRON CG14082
2R	19366637	2R_19366637_SNP [dm3] 2R_23479114_SNP [dm6]	G	A	1.506e^-4	0.639	INTRON CG43795
3L	17626110	3L_17626110_SNP [dm3] 3L_17633010_SNP [dm6]	A	G	1.517e^-4	0.639	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
3R	25229006	3R_25229006_SNP [dm3] 3R_29403284_SNP [dm6]	T	C	1.519e^-4	0.639	INTRON Ptp99A
2R	8120340	2R_8120340_SNP [dm3] 2R_12232835_SNP [dm6]	G	A	1.523e^-4	0.639	INTERGENIC
2R	10430505	2R_10430505_SNP [dm3] 2R_14543000_SNP [dm6]	T	G	1.524e^-4	0.639	INTRON ttv
3L	19086760	3L_19086760_SNP [dm3] 3L_19093660_SNP [dm6]	T	C	1.529e^-4	0.639	INTRON MESR6	TF binding site mE1_TFBS_cad
2L	10315945	2L_10315945_SNP [dm3] 2L_10315945_SNP [dm6]	T	C	1.531e^-4	0.639	SYNONYMOUS_CODING CG4972	TF binding site mE1_TFBS_sens
3L	19092231	3L_19092231_SNP [dm3] 3L_19099131_SNP [dm6]	G	A	1.533e^-4	0.639	UTR_3_PRIME Gem2 DOWNSTREAM CG14079	TF binding site mE1_TFBS_cad
X	1484096	X_1484096_SNP [dm3] X_1590063_SNP [dm6]	C	T	1.538e^-4	0.639	INTRON br & 1 other
3L	8405513	3L_8405513_SNP [dm3] 3L_8412413_SNP [dm6]	C	T	1.544e^-4	0.639	SYNONYMOUS_CODING Exo70 UTR_5_PRIME Oseg1 UPSTREAM Oseg1 & 1 other	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	17131822	2L_17131822_SNP [dm3] 2L_17131822_SNP [dm6]	T	G	1.547e^-4	0.639	INTRON beat-IIIa & 1 other
2R	4693158	2R_4693158_SNP [dm3] 2R_8805653_SNP [dm6]	C	T	1.549e^-4	0.639	INTRON sns
2L	12094069	2L_12094069_SNP [dm3] 2L_12094069_SNP [dm6]	A	C	1.554e^-4	0.639	NON_SYNONYMOUS_CODING Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25134587	3R_25134587_SNP [dm3] 3R_29308865_SNP [dm6]	G	T	1.557e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	8665944	2R_8665944_SNP [dm3] 2R_12778439_SNP [dm6]	G	A	1.557e^-4	0.639	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	2798897	X_2798897_SNP [dm3] X_2904864_SNP [dm6]	A	G	1.558e^-4	0.639	INTRON kirre
2R	18043776	2R_18043776_SNP [dm3] 2R_22156271_SNP [dm6]	A	G	1.560e^-4	0.639	INTRON a	TF binding site BDTNP1_TFBS_da
3L	19120675	3L_19120675_SNP [dm3] 3L_19127575_SNP [dm6]	T	C	1.562e^-4	0.639	DOWNSTREAM Spn75F INTRON CG14082	TF binding site mE1_TFBS_inv
3R	13872362	3R_13872362_SNP [dm3] 3R_18046640_SNP [dm6]	G	A	1.568e^-4	0.639	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2L	12771287	2L_12771287_SNP [dm3] 2L_12771287_SNP [dm6]	T	A	1.569e^-4	0.639	INTERGENIC
2R	8700501	2R_8700501_SNP [dm3] 2R_12812996_SNP [dm6]	G	A	1.571e^-4	0.639	INTERGENIC
2L	14657433	2L_14657433_DEL [dm3] 2L_14657433_DEL [dm6]	AG	A	1.572e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
2R	10032439	2R_10032439_SNP [dm3] 2R_14144934_SNP [dm6]	T	C	1.577e^-4	0.639	DOWNSTREAM mir-989 INTERGENIC
X	16401262	X_16401262_SNP [dm3] X_16507229_SNP [dm6]	C	A	1.579e^-4	0.639	INTRON para
3L	7853690	3L_7853690_SNP [dm3] 3L_7860590_SNP [dm6]	G	A	1.580e^-4	0.639	INTRON Pdp1
2L	10191206	2L_10191206_SNP [dm3] 2L_10191206_SNP [dm6]	G	A	1.580e^-4	0.639	INTRON Sur & 1 other	TF binding site mE1_TFBS_cad
2R	7692179	2R_7692179_SNP [dm3] 2R_11804674_SNP [dm6]	T	C	1.581e^-4	0.639	INTRON ths	TF binding site mE1_TFBS_cad
2R	17161266	2R_17161266_SNP [dm3] 2R_21273761_SNP [dm6]	C	T	1.590e^-4	0.639	INTRON Rgk3
2R	7692176	2R_7692176_SNP [dm3] 2R_11804671_SNP [dm6]	C	A	1.592e^-4	0.639	INTRON ths	TF binding site mE1_TFBS_cad
3R	4786802	3R_4786802_SNP [dm3] 3R_8961080_SNP [dm6]	C	T	1.597e^-4	0.639	INTRON CG11966
3L	18695688	3L_18695688_SNP [dm3] 3L_18702588_SNP [dm6]	A	T	1.610e^-4	0.639	INTERGENIC
2R	9732301	2R_9732301_SNP [dm3] 2R_13844796_SNP [dm6]	C	T	1.610e^-4	0.639	INTRON Syngr
2L	6539375	2L_6539375_SNP [dm3] 2L_6539375_SNP [dm6]	C	T	1.612e^-4	0.639	INTRON eya
3R	24466060	3R_24466060_SNP [dm3] 3R_28640338_SNP [dm6]	C	A	1.621e^-4	0.639	INTERGENIC
3L	9614074	3L_9614074_SNP [dm3] 3L_9620974_SNP [dm6]	T	C	1.623e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12094055	2L_12094055_SNP [dm3] 2L_12094055_SNP [dm6]	G	A	1.627e^-4	0.639	SYNONYMOUS_CODING Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12261794	X_12261794_SNP [dm3] X_12367761_SNP [dm6]	C	T	1.628e^-4	0.639	INTERGENIC
3L	19109197	3L_19109197_DEL [dm3] 3L_19116097_DEL [dm6]	AAAC	A	1.635e^-4	0.639	INTRON CG14082
3L	21037359	3L_21037359_DEL [dm3] 3L_21044259_DEL [dm6]	CG	C	1.638e^-4	0.639	INTRON siz	TF binding site mE1_TFBS_sens
3L	19107566	3L_19107566_SNP [dm3] 3L_19114466_SNP [dm6]	G	T	1.639e^-4	0.639	INTRON CG14082	TF binding site mE1_TFBS_inv
2R	14416334	2R_14416334_SNP [dm3] 2R_18528829_SNP [dm6]	G	A	1.646e^-4	0.639	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19096451	3L_19096451_SNP [dm3] 3L_19103351_SNP [dm6]	A	G	1.653e^-4	0.639	INTERGENIC
3R	26700538	3R_26700538_DEL [dm3] 3R_30874816_DEL [dm6]	TT	G	1.657e^-4	0.639	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2L	17129504	2L_17129504_SNP [dm3] 2L_17129504_SNP [dm6]	A	C	1.659e^-4	0.639	INTERGENIC
X	1481616	X_1481616_SNP [dm3] X_1587583_SNP [dm6]	A	C	1.660e^-4	0.639	INTRON br & 1 other	TF binding site mE1_TFBS_chinmo
2R	18043812	2R_18043812_SNP [dm3] 2R_22156307_SNP [dm6]	C	T	1.661e^-4	0.639	INTRON a	TF binding site BDTNP1_TFBS_da
3L	19121383	3L_19121383_SNP [dm3] 3L_19128283_SNP [dm6]	A	G	1.662e^-4	0.639	DOWNSTREAM Spn75F INTRON CG14082
3R	18715550	3R_18715550_SNP [dm3] 3R_22889828_SNP [dm6]	C	A	1.662e^-4	0.639	INTERGENIC
2L	17131604	2L_17131604_SNP [dm3] 2L_17131604_SNP [dm6]	G	A	1.666e^-4	0.639	UTR_5_PRIME CG34106 & 1 other INTRON beat-IIIa
2L	12797662	2L_12797662_SNP [dm3] 2L_12797662_SNP [dm6]	C	G	1.669e^-4	0.639	INTERGENIC
3R	19357066	3R_19357066_SNP [dm3] 3R_23531344_SNP [dm6]	C	T	1.670e^-4	0.639	UPSTREAM CG10175 INTERGENIC
3L	9619814	3L_9619814_SNP [dm3] 3L_9626714_SNP [dm6]	C	G	1.671e^-4	0.639	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2R	7452971	2R_7452971_SNP [dm3] 2R_11565466_SNP [dm6]	C	A	1.674e^-4	0.639	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24633437	3R_24633437_SNP [dm3] 3R_28807715_SNP [dm6]	C	T	1.681e^-4	0.639	DOWNSTREAM wdn & 1 other INTERGENIC
3R	23814222	3R_23814222_SNP [dm3] 3R_27988500_SNP [dm6]	G	T	1.684e^-4	0.639	UPSTREAM betaTub97EF INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8133499	2R_8133499_DEL [dm3] 2R_12245994_DEL [dm6]	CTC	C	1.696e^-4	0.639	DOWNSTREAM CR44315 INTERGENIC
3L	6996701	3L_6996701_SNP [dm3] 3L_7003601_SNP [dm6]	C	T	1.698e^-4	0.639	INTRON Mp
X	12261431	X_12261431_DEL [dm3] X_12367398_DEL [dm6]	CGGTTCGGTTCAGTTT...	C	1.699e^-4	0.639	INTERGENIC
2R	19505678	2R_19505678_SNP [dm3] 2R_23618155_SNP [dm6]	G	C	1.706e^-4	0.639	INTERGENIC
3R	22788873	3R_22788873_SNP [dm3] 3R_26963151_SNP [dm6]	G	A	1.708e^-4	0.639	SPLICE_SITE_REGION Tsp97E INTRON Tsp97E
2R	4790322	2R_4790322_SNP [dm3] 2R_8902817_SNP [dm6]	G	A	1.715e^-4	0.639	UTR_3_PRIME Ggamma1
3L	19096831	3L_19096831_SNP [dm3] 3L_19103731_SNP [dm6]	C	T	1.718e^-4	0.639	INTERGENIC
2R	15125179	2R_15125179_SNP [dm3] 2R_19237674_SNP [dm6]	A	G	1.722e^-4	0.639	INTRON cora
3L	17973711	3L_17973711_SNP [dm3] 3L_17980611_SNP [dm6]	A	G	1.725e^-4	0.639	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4786799	3R_4786799_SNP [dm3] 3R_8961077_SNP [dm6]	G	C	1.725e^-4	0.639	INTRON CG11966
3R	23225022	3R_23225022_SNP [dm3] 3R_27399300_SNP [dm6]	A	G	1.729e^-4	0.639	INTRON side	TF binding site mE1_TFBS_chinmo
2L	17974341	2L_17974341_SNP [dm3] 2L_17974341_SNP [dm6]	A	T	1.731e^-4	0.639	UTR_3_PRIME CG5674 INTRON btv
3L	9192834	3L_9192834_SNP [dm3] 3L_9199734_SNP [dm6]	T	C	1.732e^-4	0.639	INTERGENIC
2R	18752633	2R_18752633_MNP [dm3] 2R_22865110_MNP [dm6]	CAA	ATG	1.733e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19374793	2R_19374793_SNP [dm3] 2R_23487270_SNP [dm6]	G	C	1.734e^-4	0.639	INTRON CG43795
2R	16076927	2R_16076927_SNP [dm3] 2R_20189422_SNP [dm6]	T	G	1.734e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26700569	3R_26700569_SNP [dm3] 3R_30874847_SNP [dm6]	C	A	1.747e^-4	0.639	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3R	22885409	3R_22885409_SNP [dm3] 3R_27059687_SNP [dm6]	A	C	1.750e^-4	0.639	SYNONYMOUS_CODING Nep5
2R	15960988	2R_15960988_SNP [dm3] 2R_20073483_SNP [dm6]	A	G	1.754e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7452929	2R_7452929_SNP [dm3] 2R_11565424_SNP [dm6]	C	T	1.755e^-4	0.639	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12747764	3R_12747764_SNP [dm3] 3R_16922042_SNP [dm6]	T	A	1.759e^-4	0.639	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1707430	3L_1707430_SNP [dm3] 3L_1707430_SNP [dm6]	G	C	1.772e^-4	0.639	INTRON CG7991	TF binding site mE1_TFBS_HSA
3L	8363087	3L_8363087_SNP [dm3] 3L_8369987_SNP [dm6]	G	T	1.774e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19366642	2R_19366642_SNP [dm3] 2R_23479119_SNP [dm6]	C	G	1.782e^-4	0.639	INTRON CG43795
3L	1916510	3L_1916510_INS [dm3] 3L_1916510_INS [dm6]	A	AACTTTGAGTTCAA...	1.790e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17117396	2L_17117396_SNP [dm3] 2L_17117396_SNP [dm6]	A	G	1.795e^-4	0.639	INTERGENIC
3R	2673187	3R_2673187_SNP [dm3] 3R_6847465_SNP [dm6]	G	C	1.798e^-4	0.639	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1344703	3R_1344703_SNP [dm3] 3R_5518981_SNP [dm6]	A	G	1.801e^-4	0.639	INTRON Nmdar1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15811757	X_15811757_SNP [dm3] X_15917724_SNP [dm6]	C	T	1.802e^-4	0.639	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10285159	3L_10285159_SNP [dm3] 3L_10292059_SNP [dm6]	T	A	1.807e^-4	0.639	INTERGENIC
X	650206	X_650206_INS [dm3] X_756173_INS [dm6]	A	AGATATA	1.808e^-4	0.639	UPSTREAM CG5254 INTRON CG5254
2L	5770593	2L_5770593_SNP [dm3] 2L_5770593_SNP [dm6]	T	A	1.811e^-4	0.639	NON_SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22026078	3R_22026078_SNP [dm3] 3R_26200356_SNP [dm6]	C	A	1.816e^-4	0.639	INTRON CR44320	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25775486	3R_25775486_SNP [dm3] 3R_29949764_SNP [dm6]	G	A	1.817e^-4	0.639	INTERGENIC
3R	12767648	3R_12767648_SNP [dm3] 3R_16941926_SNP [dm6]	A	T	1.818e^-4	0.639	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13601158	2R_13601158_INS [dm3] 2R_17713653_INS [dm6]	G	GA	1.824e^-4	0.639	INTRON CG6424
2L	15798488	2L_15798488_SNP [dm3] 2L_15798488_SNP [dm6]	G	A	1.824e^-4	0.639	INTERGENIC
3R	17033251	3R_17033251_SNP [dm3] 3R_21207529_SNP [dm6]	G	T	1.827e^-4	0.639	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	25765252	3R_25765252_SNP [dm3] 3R_29939530_SNP [dm6]	T	C	1.839e^-4	0.639	SYNONYMOUS_CODING CG15523
2R	19359297	2R_19359297_SNP [dm3] 2R_23471774_SNP [dm6]	C	G	1.839e^-4	0.639	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
X	13189706	X_13189706_SNP [dm3] X_13295673_SNP [dm6]	T	C	1.839e^-4	0.639	INTRON CG1764
3R	24458231	3R_24458231_SNP [dm3] 3R_28632509_SNP [dm6]	C	G	1.840e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12094295	2L_12094295_SNP [dm3] 2L_12094295_SNP [dm6]	A	G	1.843e^-4	0.639	SYNONYMOUS_CODING Pex19 DOWNSTREAM CG6712	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	638205	X_638205_SNP [dm3] X_744172_SNP [dm6]	A	G	1.845e^-4	0.639	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25765280	3R_25765280_SNP [dm3] 3R_29939558_SNP [dm6]	T	A	1.850e^-4	0.639	NON_SYNONYMOUS_CODING CG15523
2R	8896584	2R_8896584_SNP [dm3] 2R_13009079_SNP [dm6]	G	T	1.850e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12437125	3L_12437125_SNP [dm3] 3L_12444025_SNP [dm6]	G	A	1.852e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	1484335	X_1484335_SNP [dm3] X_1590302_SNP [dm6]	C	A	1.858e^-4	0.639	INTRON br & 1 other
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	1.866e^-4	0.639	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12935581	3R_12935581_SNP [dm3] 3R_17109859_SNP [dm6]	C	A	1.879e^-4	0.639	INTRON cher
X	1485824	X_1485824_SNP [dm3] X_1591791_SNP [dm6]	T	C	1.881e^-4	0.639	INTRON br & 1 other
2L	4770258	2L_4770258_INS [dm3] 2L_4770258_INS [dm6]	G	GGTT	1.883e^-4	0.639	INTRON CG15630
3R	4791443	3R_4791443_SNP [dm3] 3R_8965721_SNP [dm6]	G	C	1.887e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26082876	3R_26082876_SNP [dm3] 3R_30257154_SNP [dm6]	T	C	1.888e^-4	0.639	INTERGENIC
3L	16099227	3L_16099227_SNP [dm3] 3L_16106127_SNP [dm6]	T	G	1.889e^-4	0.639	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
2R	18276480	2R_18276480_SNP [dm3] 2R_22388975_SNP [dm6]	A	T	1.897e^-4	0.639	INTRON CG13506
2R	14015181	2R_14015181_SNP [dm3] 2R_18127676_SNP [dm6]	T	C	1.901e^-4	0.639	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	819752	3L_819752_SNP [dm3] 3L_819752_SNP [dm6]	T	C	1.902e^-4	0.639	INTERGENIC
2R	3269896	2R_3269896_SNP [dm3] 2R_7382391_SNP [dm6]	C	A	1.905e^-4	0.639	UTR_3_PRIME cos UPSTREAM Dscam1 DOWNSTREAM cos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12629674	3R_12629674_DEL [dm3] 3R_16803952_DEL [dm6]	TGGTAT	T	1.907e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18150318	3L_18150318_SNP [dm3] 3L_18157218_SNP [dm6]	G	A	1.912e^-4	0.639	INTRON CG13699
3L	649998	3L_649998_SNP [dm3] 3L_649998_SNP [dm6]	G	A	1.915e^-4	0.639	INTRON Gale	TF binding site mE1_TFBS_chinmo
2L	7525791	2L_7525791_SNP [dm3] 2L_7525791_SNP [dm6]	G	A	1.917e^-4	0.639	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12261543	X_12261543_SNP [dm3] X_12367510_SNP [dm6]	G	A	1.918e^-4	0.639	INTERGENIC
2R	9490461	2R_9490461_SNP [dm3] 2R_13602956_SNP [dm6]	G	C	1.919e^-4	0.639	INTERGENIC
3L	2284793	3L_2284793_SNP [dm3] 3L_2284793_SNP [dm6]	C	G	1.920e^-4	0.639	INTRON MsR2
2L	1307459	2L_1307459_SNP [dm3] 2L_1307459_SNP [dm6]	C	T	1.920e^-4	0.639	INTERGENIC
3L	19109371	3L_19109371_SNP [dm3] 3L_19116271_SNP [dm6]	C	T	1.921e^-4	0.639	INTRON CG14082
3R	19420940	3R_19420940_SNP [dm3] 3R_23595218_SNP [dm6]	T	A	1.923e^-4	0.639	INTRON CG16723
2R	6500947	2R_6500947_SNP [dm3] 2R_10613442_SNP [dm6]	A	T	1.926e^-4	0.639	INTRON psq
2R	7046652	2R_7046652_SNP [dm3] 2R_11159147_SNP [dm6]	C	T	1.928e^-4	0.639	UTR_5_PRIME shn INTRON CG13229	TF binding site BDTNP1_TFBS_twi
3R	10375580	3R_10375580_SNP [dm3] 3R_14549858_SNP [dm6]	C	T	1.933e^-4	0.639	INTRON Pde6
3R	2294060	3R_2294060_SNP [dm3] 3R_6468338_SNP [dm6]	G	A	1.934e^-4	0.639	UPSTREAM Neurochondrin INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17146213	3R_17146213_DEL [dm3] 3R_21320491_DEL [dm6]	ACACACTACAA...	A	1.937e^-4	0.639	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
3L	18151762	3L_18151762_SNP [dm3] 3L_18158662_SNP [dm6]	C	G	1.937e^-4	0.639	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26353214	3R_26353214_SNP [dm3] 3R_30527492_SNP [dm6]	C	T	1.944e^-4	0.639	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26557423	3R_26557423_SNP [dm3] 3R_30731701_SNP [dm6]	A	G	1.951e^-4	0.639	UPSTREAM CG11313 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13536546	2R_13536546_SNP [dm3] 2R_17649041_SNP [dm6]	G	T	1.952e^-4	0.639	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1483506	X_1483506_SNP [dm3] X_1589473_SNP [dm6]	C	T	1.960e^-4	0.639	INTRON br & 1 other
3R	13871144	3R_13871144_SNP [dm3] 3R_18045422_SNP [dm6]	G	T	1.960e^-4	0.639	UTR_3_PRIME htl
X	12261645	X_12261645_SNP [dm3] X_12367612_SNP [dm6]	T	A	1.964e^-4	0.639	INTERGENIC
X	1559637	X_1559637_SNP [dm3] X_1665604_SNP [dm6]	T	C	1.970e^-4	0.639	SYNONYMOUS_CODING dor DOWNSTREAM br INTRON Mur2B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2634418	3R_2634418_SNP [dm3] 3R_6808696_SNP [dm6]	T	G	1.970e^-4	0.639	DOWNSTREAM CR42651 & 1 other INTERGENIC
2L	7518853	2L_7518853_SNP [dm3] 2L_7518853_SNP [dm6]	C	A	1.970e^-4	0.639	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9263758	2R_9263758_SNP [dm3] 2R_13376253_SNP [dm6]	A	G	1.973e^-4	0.639	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
2R	18276458	2R_18276458_SNP [dm3] 2R_22388953_SNP [dm6]	G	A	1.974e^-4	0.639	INTRON CG13506
3R	22792579	3R_22792579_INS [dm3] 3R_26966857_INS [dm6]	T	TTCACT	1.980e^-4	0.639	UPSTREAM CG5521 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18276477	2R_18276477_SNP [dm3] 2R_22388972_SNP [dm6]	A	T	1.993e^-4	0.639	INTRON CG13506
3L	10023202	3L_10023202_DEL [dm3] 3L_10030102_DEL [dm6]	CAAAA	G	1.995e^-4	0.639	SPLICE_SITE_REGION CR45155 INTRON dpr6 EXON CR45155
3R	25765239	3R_25765239_SNP [dm3] 3R_29939517_SNP [dm6]	C	T	1.997e^-4	0.639	NON_SYNONYMOUS_CODING CG15523
2R	5833624	2R_5833624_SNP [dm3] 2R_9946119_SNP [dm6]	A	G	1.999e^-4	0.639	INTRON Mef2
3L	18335912	3L_18335912_SNP [dm3] 3L_18342812_SNP [dm6]	G	C	2.000e^-4	0.639	INTERGENIC
3R	12589580	3R_12589580_SNP [dm3] 3R_16763858_SNP [dm6]	C	A	2.009e^-4	0.639	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	1491406	X_1491406_SNP [dm3] X_1597373_SNP [dm6]	G	T	2.010e^-4	0.639	INTRON br & 1 other
2R	9762591	2R_9762591_SNP [dm3] 2R_13875086_SNP [dm6]	C	A	2.018e^-4	0.639	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17106894	2L_17106894_SNP [dm3] 2L_17106894_SNP [dm6]	A	C	2.021e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26700558	3R_26700558_SNP [dm3] 3R_30874836_SNP [dm6]	A	T	2.022e^-4	0.639	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3L	9613920	3L_9613920_SNP [dm3] 3L_9620820_SNP [dm6]	G	A	2.029e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18911411	2R_18911411_SNP [dm3] 2R_23023888_SNP [dm6]	T	C	2.030e^-4	0.639	INTRON twi & 1 other
2R	18276479	2R_18276479_SNP [dm3] 2R_22388974_SNP [dm6]	A	C	2.036e^-4	0.639	INTRON CG13506
2L	14657429	2L_14657429_SNP [dm3] 2L_14657429_SNP [dm6]	A	C	2.038e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
2L	17129735	2L_17129735_SNP [dm3] 2L_17129735_SNP [dm6]	T	C	2.040e^-4	0.639	INTERGENIC
3R	17060579	3R_17060579_SNP [dm3] 3R_21234857_SNP [dm6]	A	G	2.045e^-4	0.639	INTRON e	regulatory region REDfly_CRMs
3R	18715573	3R_18715573_SNP [dm3] 3R_22889851_SNP [dm6]	T	A	2.047e^-4	0.639	INTERGENIC
2R	18276462	2R_18276462_SNP [dm3] 2R_22388957_SNP [dm6]	T	A	2.051e^-4	0.639	INTRON CG13506
3L	10023214	3L_10023214_SNP [dm3] 3L_10030114_SNP [dm6]	C	T	2.056e^-4	0.639	INTRON dpr6 EXON CR45155
3L	19105037	3L_19105037_SNP [dm3] 3L_19111937_SNP [dm6]	A	C	2.060e^-4	0.639	INTRON CG14082
2L	2125066	2L_2125066_SNP [dm3] 2L_2125066_SNP [dm6]	A	G	2.076e^-4	0.639	INTERGENIC
3L	7845985	3L_7845985_SNP [dm3] 3L_7852885_SNP [dm6]	C	G	2.078e^-4	0.639	INTRON Pdp1
3R	26082873	3R_26082873_SNP [dm3] 3R_30257151_SNP [dm6]	G	C	2.079e^-4	0.639	INTERGENIC
2R	8121023	2R_8121023_DEL [dm3] 2R_12233518_DEL [dm6]	TT	T	2.080e^-4	0.639	DOWNSTREAM CR44313 INTERGENIC
2R	4496311	2R_4496311_SNP [dm3] 2R_8608806_SNP [dm6]	C	A	2.082e^-4	0.639	INTRON rgr
2R	19359950	2R_19359950_SNP [dm3] 2R_23472427_SNP [dm6]	C	T	2.085e^-4	0.639	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	19097998	3L_19097998_SNP [dm3] 3L_19104898_SNP [dm6]	G	A	2.086e^-4	0.639	DOWNSTREAM CG14082 INTERGENIC
2L	7696651	2L_7696651_SNP [dm3] 2L_7696651_SNP [dm6]	T	G	2.086e^-4	0.639	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
3R	23289796	3R_23289796_SNP [dm3] 3R_27464074_SNP [dm6]	T	C	2.092e^-4	0.639	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8006978	2R_8006978_SNP [dm3] 2R_12119473_SNP [dm6]	T	C	2.097e^-4	0.639	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5503931	2L_5503931_SNP [dm3] 2L_5503931_SNP [dm6]	C	T	2.098e^-4	0.639	INTERGENIC
2L	12092773	2L_12092773_SNP [dm3] 2L_12092773_SNP [dm6]	G	C	2.100e^-4	0.639	UPSTREAM CR44594 & 1 other INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	8132996	2R_8132996_SNP [dm3] 2R_12245491_SNP [dm6]	T	C	2.110e^-4	0.639	UPSTREAM CG43244 INTERGENIC
2R	4790098	2R_4790098_SNP [dm3] 2R_8902593_SNP [dm6]	G	A	2.114e^-4	0.639	UTR_3_PRIME Ggamma1
3R	25400577	3R_25400577_SNP [dm3] 3R_29574855_SNP [dm6]	A	T	2.116e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6546801	X_6546801_SNP [dm3] X_6652768_SNP [dm6]	A	G	2.118e^-4	0.639	UTR_3_PRIME pigs DOWNSTREAM pigs & 1 other
3R	22896879	3R_22896879_SNP [dm3] 3R_27071157_SNP [dm6]	T	C	2.126e^-4	0.639	INTERGENIC
3L	14132024	3L_14132024_SNP [dm3] 3L_14138924_SNP [dm6]	T	G	2.133e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	17777596	3R_17777596_SNP [dm3] 3R_21951874_SNP [dm6]	C	T	2.133e^-4	0.639	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	19568997	3R_19568997_SNP [dm3] 3R_23743275_SNP [dm6]	G	A	2.136e^-4	0.639	INTRON Hmgcr
2L	1310087	2L_1310087_SNP [dm3] 2L_1310087_SNP [dm6]	T	C	2.148e^-4	0.639	INTERGENIC
2R	18276494	2R_18276494_INS [dm3] 2R_22388989_INS [dm6]	TCT	AAGTA	2.149e^-4	0.639	INTRON CG13506
2L	3797117	2L_3797117_SNP [dm3] 2L_3797117_SNP [dm6]	C	T	2.152e^-4	0.639	SYNONYMOUS_CODING CG3921
X	19111827	X_19111827_SNP [dm3] X_19217794_SNP [dm6]	A	C	2.155e^-4	0.639	INTERGENIC
3R	19268706	3R_19268706_SNP [dm3] 3R_23442984_SNP [dm6]	C	T	2.158e^-4	0.639	INTRON CG4374
2R	5091110	2R_5091110_SNP [dm3] 2R_9203605_SNP [dm6]	A	G	2.179e^-4	0.639	DOWNSTREAM CG8027 INTERGENIC
3R	24458234	3R_24458234_SNP [dm3] 3R_28632512_SNP [dm6]	C	T	2.182e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14015180	2R_14015180_SNP [dm3] 2R_18127675_SNP [dm6]	C	G	2.182e^-4	0.639	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16962698	3L_16962698_SNP [dm3] 3L_16969598_SNP [dm6]	C	A	2.188e^-4	0.639	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2L	18911805	2L_18911805_SNP [dm3] 2L_18911805_SNP [dm6]	A	T	2.189e^-4	0.639	INTERGENIC
3R	19435026	3R_19435026_SNP [dm3] 3R_23609304_SNP [dm6]	C	A	2.190e^-4	0.639	INTRON CG31145
3L	14710594	3L_14710594_SNP [dm3] 3L_14717494_SNP [dm6]	T	G	2.191e^-4	0.639	INTRON ome	regulatory region REDfly_CRMs
3R	16808016	3R_16808016_SNP [dm3] 3R_20982294_SNP [dm6]	C	T	2.192e^-4	0.639	INTRON Calx
3R	19414394	3R_19414394_SNP [dm3] 3R_23588672_SNP [dm6]	A	T	2.192e^-4	0.639	INTRON CG10182
2L	7518936	2L_7518936_SNP [dm3] 2L_7518936_SNP [dm6]	G	A	2.195e^-4	0.639	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21056434	3R_21056434_SNP [dm3] 3R_25230712_SNP [dm6]	G	A	2.195e^-4	0.639	UTR_5_PRIME Cad96Cb
3R	24634900	3R_24634900_SNP [dm3] 3R_28809178_SNP [dm6]	A	G	2.197e^-4	0.639	SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5961861	3L_5961861_SNP [dm3] 3L_5968761_SNP [dm6]	T	G	2.199e^-4	0.639	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23181727	3R_23181727_SNP [dm3] 3R_27356005_SNP [dm6]	T	A	2.203e^-4	0.639	INTRON CG42534
2L	2449605	2L_2449605_SNP [dm3] 2L_2449605_SNP [dm6]	T	A	2.203e^-4	0.639	UPSTREAM dpp INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	18276485	2R_18276485_SNP [dm3] 2R_22388980_SNP [dm6]	T	A	2.204e^-4	0.639	INTRON CG13506
2R	18276487	2R_18276487_MNP [dm3] 2R_22388982_MNP [dm6]	CGCG	ATAT	2.204e^-4	0.639	INTRON CG13506
2L	14657421	2L_14657421_SNP [dm3] 2L_14657421_SNP [dm6]	C	G	2.217e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
2L	4297335	2L_4297335_INS [dm3] 2L_4297335_INS [dm6]	G	GCGAG	2.232e^-4	0.639	INTRON tutl
3L	14552239	3L_14552239_SNP [dm3] 3L_14559139_SNP [dm6]	T	C	2.243e^-4	0.639	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
2R	19359284	2R_19359284_SNP [dm3] 2R_23471761_SNP [dm6]	T	C	2.243e^-4	0.639	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2R	19372361	2R_19372361_SNP [dm3] 2R_23484838_SNP [dm6]	C	T	2.249e^-4	0.639	INTRON CG43795
3L	7845139	3L_7845139_SNP [dm3] 3L_7852039_SNP [dm6]	G	C	2.249e^-4	0.639	INTRON Pdp1
2L	5756335	2L_5756335_DEL [dm3] 2L_5756335_DEL [dm6]	GTGGG	G	2.250e^-4	0.639	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23137203	3R_23137203_SNP [dm3] 3R_27311481_SNP [dm6]	C	T	2.251e^-4	0.639	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad
3R	25839755	3R_25839755_SNP [dm3] 3R_30014033_SNP [dm6]	A	G	2.256e^-4	0.639	INTRON CG7920
3R	9680189	3R_9680189_SNP [dm3] 3R_13854467_SNP [dm6]	C	T	2.260e^-4	0.639	DOWNSTREAM CG14362 INTERGENIC
3R	22603270	3R_22603270_SNP [dm3] 3R_26777548_SNP [dm6]	G	A	2.267e^-4	0.639	INTERGENIC
2L	8829957	2L_8829957_SNP [dm3] 2L_8829957_SNP [dm6]	C	G	2.268e^-4	0.639	DOWNSTREAM SoxN INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14682928	2R_14682928_SNP [dm3] 2R_18795423_SNP [dm6]	A	G	2.269e^-4	0.639	SYNONYMOUS_CODING MFS15 DOWNSTREAM CG15080	TF binding site mE1_TFBS_sens
X	6709122	X_6709122_SNP [dm3] X_6815089_SNP [dm6]	C	A	2.270e^-4	0.639	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16776090	2L_16776090_SNP [dm3] 2L_16776090_SNP [dm6]	T	A	2.276e^-4	0.639	INTRON Mhc
X	10116904	X_10116904_SNP [dm3] X_10222871_SNP [dm6]	A	G	2.280e^-4	0.639	UTR_5_PRIME CG34408 INTRON CG34408
3R	25161098	3R_25161098_SNP [dm3] 3R_29335376_SNP [dm6]	A	T	2.288e^-4	0.639	INTERGENIC
3R	25130171	3R_25130171_SNP [dm3] 3R_29304449_SNP [dm6]	A	G	2.292e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15862345	X_15862345_SNP [dm3] X_15968312_SNP [dm6]	G	A	2.297e^-4	0.639	INTRON mmd
2R	6763300	2R_6763300_SNP [dm3] 2R_10875795_SNP [dm6]	A	T	2.313e^-4	0.639	UTR_5_PRIME nclb UPSTREAM CG30016	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	19414264	3R_19414264_SNP [dm3] 3R_23588542_SNP [dm6]	C	T	2.318e^-4	0.639	SYNONYMOUS_CODING CG10182
3L	19096772	3L_19096772_SNP [dm3] 3L_19103672_SNP [dm6]	A	T	2.325e^-4	0.639	INTERGENIC
X	13270538	X_13270538_SNP [dm3] X_13376505_SNP [dm6]	G	A	2.325e^-4	0.639	INTRON CG1640	TF binding site mE1_TFBS_inv
2L	11247107	2L_11247107_SNP [dm3] 2L_11247107_SNP [dm6]	T	G	2.325e^-4	0.639	INTRON ab
X	9836644	X_9836644_SNP [dm3] X_9942611_SNP [dm6]	G	T	2.325e^-4	0.639	INTERGENIC
3L	19104490	3L_19104490_DEL [dm3] 3L_19111390_DEL [dm6]	TTGGCGAAATGCAGCGACTC...	T	2.333e^-4	0.639	INTRON CG14082
X	12261783	X_12261783_SNP [dm3] X_12367750_SNP [dm6]	C	A	2.340e^-4	0.639	INTERGENIC
X	3921932	X_3921932_SNP [dm3] X_4027899_SNP [dm6]	G	T	2.347e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2199885	X_2199885_SNP [dm3] X_2305852_SNP [dm6]	G	A	2.348e^-4	0.639	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	1074958	2L_1074958_SNP [dm3] 2L_1074958_SNP [dm6]	G	A	2.354e^-4	0.639	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	14682397	3L_14682397_SNP [dm3] 3L_14689297_SNP [dm6]	T	G	2.355e^-4	0.639	INTRON ome
3R	12572450	3R_12572450_SNP [dm3] 3R_16746728_SNP [dm6]	T	A	2.359e^-4	0.639	UPSTREAM bxd INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	21150093	3L_21150093_SNP [dm3] 3L_21156993_SNP [dm6]	T	A	2.359e^-4	0.639	INTRON Ac78C
3L	19120397	3L_19120397_SNP [dm3] 3L_19127297_SNP [dm6]	T	A	2.361e^-4	0.639	INTRON CG14082	TF binding site mE1_TFBS_inv
3R	10954201	3R_10954201_SNP [dm3] 3R_15128479_SNP [dm6]	C	T	2.363e^-4	0.639	INTRON CG42788
3L	8237027	3L_8237027_DEL [dm3] 3L_8243927_DEL [dm6]	TT	T	2.365e^-4	0.639	INTRON Dscam4
2L	12797679	2L_12797679_SNP [dm3] 2L_12797679_SNP [dm6]	G	T	2.368e^-4	0.639	INTERGENIC
3L	19097458	3L_19097458_INS [dm3] 3L_19104358_INS [dm6]	T	TT	2.370e^-4	0.639	INTERGENIC
2R	17867684	2R_17867684_SNP [dm3] 2R_21980179_SNP [dm6]	T	A	2.372e^-4	0.639	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	4118319	3R_4118319_SNP [dm3] 3R_8292597_SNP [dm6]	C	T	2.381e^-4	0.639	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG31464	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	16099223	3L_16099223_SNP [dm3] 3L_16106123_SNP [dm6]	T	A	2.382e^-4	0.639	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
3L	17412305	3L_17412305_SNP [dm3] 3L_17419205_SNP [dm6]	A	T	2.394e^-4	0.639	INTRON blot	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	13857285	3R_13857285_SNP [dm3] 3R_18031563_SNP [dm6]	G	T	2.398e^-4	0.639	INTERGENIC
X	11682944	X_11682944_SNP [dm3] X_11788911_SNP [dm6]	T	C	2.400e^-4	0.639	UTR_5_PRIME Karl
3L	8200546	3L_8200546_SNP [dm3] 3L_8207446_SNP [dm6]	T	C	2.403e^-4	0.639	INTERGENIC
3L	19069620	3L_19069620_SNP [dm3] 3L_19076520_SNP [dm6]	C	A	2.404e^-4	0.639	INTRON Mkp3
3L	15263617	3L_15263617_DEL [dm3] 3L_15270517_DEL [dm6]	TCT	C	2.409e^-4	0.639	INTERGENIC
2L	715872	2L_715872_SNP [dm3] 2L_715872_SNP [dm6]	C	T	2.411e^-4	0.639	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24819549	3R_24819549_SNP [dm3] 3R_28993827_SNP [dm6]	G	A	2.411e^-4	0.639	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2110135	2R_2110135_SNP [dm3] 2R_6222630_SNP [dm6]	G	T	2.414e^-4	0.639	INTRON bin3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13871504	3R_13871504_SNP [dm3] 3R_18045782_SNP [dm6]	G	A	2.417e^-4	0.639	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3L	16962708	3L_16962708_SNP [dm3] 3L_16969608_SNP [dm6]	T	C	2.418e^-4	0.639	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962709	3L_16962709_SNP [dm3] 3L_16969609_SNP [dm6]	G	C	2.418e^-4	0.639	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
X	14769679	X_14769679_SNP [dm3] X_14875646_SNP [dm6]	G	C	2.420e^-4	0.639	NON_SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
2R	19262589	2R_19262589_SNP [dm3] 2R_23375066_SNP [dm6]	C	T	2.420e^-4	0.639	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
3R	18036585	3R_18036585_SNP [dm3] 3R_22210863_SNP [dm6]	G	T	2.422e^-4	0.639	UPSTREAM Gld2 INTRON SKIP
X	8694639	X_8694639_SNP [dm3] X_8800606_SNP [dm6]	T	C	2.431e^-4	0.639	INTRON Lim1	TF binding site BDTNP1_TFBS_dl
3R	25839949	3R_25839949_SNP [dm3] 3R_30014227_SNP [dm6]	A	T	2.431e^-4	0.639	INTRON CG7920
3R	22480645	3R_22480645_SNP [dm3] 3R_26654923_SNP [dm6]	C	G	2.433e^-4	0.639	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2L	16780269	2L_16780269_SNP [dm3] 2L_16780269_SNP [dm6]	G	A	2.434e^-4	0.639	INTRON Mhc
3L	19033896	3L_19033896_SNP [dm3] 3L_19040796_SNP [dm6]	C	A	2.439e^-4	0.639	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19790007	X_19790007_SNP [dm3] X_19895974_SNP [dm6]	G	T	2.439e^-4	0.639	INTRON Hers	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18911196	3R_18911196_SNP [dm3] 3R_23085474_SNP [dm6]	A	G	2.441e^-4	0.639	INTRON CG13830
X	12261503	X_12261503_SNP [dm3] X_12367470_SNP [dm6]	A	G	2.443e^-4	0.639	INTERGENIC
3R	10496934	3R_10496934_SNP [dm3] 3R_14671212_SNP [dm6]	G	T	2.444e^-4	0.639	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19089017	3L_19089017_SNP [dm3] 3L_19095917_SNP [dm6]	C	T	2.460e^-4	0.639	NON_SYNONYMOUS_CODING CG11577 DOWNSTREAM CG10424	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12747774	3R_12747774_SNP [dm3] 3R_16922052_SNP [dm6]	G	A	2.462e^-4	0.639	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17567358	3R_17567358_SNP [dm3] 3R_21741636_SNP [dm6]	C	T	2.465e^-4	0.639	INTRON CG5849
2R	19377218	2R_19377218_SNP [dm3] 2R_23489695_SNP [dm6]	C	T	2.465e^-4	0.639	INTRON CG43795
3R	24306825	3R_24306825_SNP [dm3] 3R_28481103_SNP [dm6]	T	C	2.468e^-4	0.639	INTERGENIC
3L	13208190	3L_13208190_SNP [dm3] 3L_13215090_SNP [dm6]	C	T	2.471e^-4	0.639	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19420887	3R_19420887_SNP [dm3] 3R_23595165_SNP [dm6]	C	G	2.473e^-4	0.639	NON_SYNONYMOUS_CODING CG16723
3R	25061203	3R_25061203_SNP [dm3] 3R_29235481_SNP [dm6]	A	C	2.475e^-4	0.639	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_sens
3R	5013711	3R_5013711_SNP [dm3] 3R_9187989_SNP [dm6]	G	T	2.480e^-4	0.639	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9614031	3L_9614031_SNP [dm3] 3L_9620931_SNP [dm6]	C	T	2.482e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19414279	3R_19414279_SNP [dm3] 3R_23588557_SNP [dm6]	T	C	2.482e^-4	0.639	SYNONYMOUS_CODING CG10182
2L	8063221	2L_8063221_SNP [dm3] 2L_8063221_SNP [dm6]	A	G	2.495e^-4	0.639	SYNONYMOUS_CODING poe
3L	19096542	3L_19096542_SNP [dm3] 3L_19103442_SNP [dm6]	C	A	2.498e^-4	0.639	INTERGENIC
2R	19356809	2R_19356809_SNP [dm3] 2R_23469286_SNP [dm6]	T	G	2.505e^-4	0.639	DOWNSTREAM Or59b INTRON CG43795
3L	18149106	3L_18149106_SNP [dm3] 3L_18156006_SNP [dm6]	G	A	2.508e^-4	0.639	SYNONYMOUS_CODING CG13699
3L	19466535	3L_19466535_SNP [dm3] 3L_19473435_SNP [dm6]	A	G	2.514e^-4	0.639	DOWNSTREAM CG12519 INTERGENIC
2R	19357621	2R_19357621_SNP [dm3] 2R_23470098_SNP [dm6]	C	G	2.516e^-4	0.639	DOWNSTREAM Or59b INTRON CG43795
2L	11518619	2L_11518619_SNP [dm3] 2L_11518619_SNP [dm6]	G	C	2.516e^-4	0.639	NON_SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2R	7515914	2R_7515914_INS [dm3] 2R_11628409_INS [dm6]	T	TAAAGT	2.524e^-4	0.639	INTRON CG9005	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2026798	3L_2026798_SNP [dm3] 3L_2026798_SNP [dm6]	A	G	2.524e^-4	0.639	UPSTREAM CG34259 INTERGENIC
2L	8912787	2L_8912787_SNP [dm3] 2L_8912787_SNP [dm6]	T	A	2.525e^-4	0.639	INTRON CG34398
X	12261767	X_12261767_SNP [dm3] X_12367734_SNP [dm6]	C	T	2.526e^-4	0.639	INTERGENIC
2R	10602563	2R_10602563_SNP [dm3] 2R_14715058_SNP [dm6]	C	A	2.527e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16788469	2L_16788469_INS [dm3] 2L_16788469_INS [dm6]	G	TCAACTCA	2.545e^-4	0.639	UTR_3_PRIME Mhc DOWNSTREAM Cyt-b5-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23112048	3R_23112048_SNP [dm3] 3R_27286326_SNP [dm6]	G	A	2.546e^-4	0.639	NON_SYNONYMOUS_CODING CG3368
2R	8951792	2R_8951792_SNP [dm3] 2R_13064287_SNP [dm6]	C	A	2.553e^-4	0.639	INTRON Drl-2
2L	20693740	2L_20693740_SNP [dm3] 2L_20693740_SNP [dm6]	G	A	2.557e^-4	0.639	INTRON Hr38
2L	8840022	2L_8840022_SNP [dm3] 2L_8840022_SNP [dm6]	A	T	2.562e^-4	0.639	INTERGENIC
2L	9710211	2L_9710211_SNP [dm3] 2L_9710211_SNP [dm6]	C	A	2.570e^-4	0.639	SYNONYMOUS_CODING CG4364	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	2.578e^-4	0.639	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19335275	3L_19335275_SNP [dm3] 3L_19342175_SNP [dm6]	C	T	2.578e^-4	0.639	UTR_3_PRIME CG32206
3R	19142490	3R_19142490_SNP [dm3] 3R_23316768_SNP [dm6]	G	A	2.579e^-4	0.639	INTRON pnt
3L	19341250	3L_19341250_SNP [dm3] 3L_19348150_SNP [dm6]	A	T	2.581e^-4	0.639	SYNONYMOUS_CODING CG32206
3R	21965103	3R_21965103_SNP [dm3] 3R_26139381_SNP [dm6]	C	T	2.586e^-4	0.639	INTERGENIC
3R	25774925	3R_25774925_SNP [dm3] 3R_29949203_SNP [dm6]	C	T	2.586e^-4	0.639	DOWNSTREAM CG15523 INTERGENIC
3R	24458225	3R_24458225_SNP [dm3] 3R_28632503_SNP [dm6]	T	A	2.587e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3991884	2L_3991884_SNP [dm3] 2L_3991884_SNP [dm6]	C	A	2.588e^-4	0.639	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8896582	2R_8896582_SNP [dm3] 2R_13009077_SNP [dm6]	T	G	2.592e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6130271	3L_6130271_SNP [dm3] 3L_6137171_SNP [dm6]	A	T	2.597e^-4	0.639	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
3L	4984186	3L_4984186_SNP [dm3] 3L_4984186_SNP [dm6]	T	C	2.597e^-4	0.639	INTRON Con
X	1497068	X_1497068_SNP [dm3] X_1603035_SNP [dm6]	G	C	2.599e^-4	0.639	INTRON br & 1 other
2R	17924735	2R_17924735_SNP [dm3] 2R_22037230_SNP [dm6]	C	A	2.602e^-4	0.639	INTRON CG34370
3L	12786672	3L_12786672_SNP [dm3] 3L_12793572_SNP [dm6]	C	T	2.602e^-4	0.639	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19039037	3L_19039037_SNP [dm3] 3L_19045937_SNP [dm6]	G	T	2.603e^-4	0.639	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19067905	3L_19067905_SNP [dm3] 3L_19074805_SNP [dm6]	T	A	2.604e^-4	0.639	INTRON Mkp3
2R	8125451	2R_8125451_SNP [dm3] 2R_12237946_SNP [dm6]	T	C	2.608e^-4	0.639	INTERGENIC
2R	19350385	2R_19350385_SNP [dm3] 2R_23462862_SNP [dm6]	G	T	2.613e^-4	0.639	INTRON CG43795	TF binding site mE1_TFBS_inv
3R	18537758	3R_18537758_SNP [dm3] 3R_22712036_SNP [dm6]	T	G	2.613e^-4	0.639	INTRON wge	TF binding site mE1_TFBS_Kr
3L	9430419	3L_9430419_SNP [dm3] 3L_9437319_SNP [dm6]	C	T	2.613e^-4	0.639	SYNONYMOUS_CODING MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16802261	3L_16802261_SNP [dm3] 3L_16809161_SNP [dm6]	C	T	2.613e^-4	0.639	SPLICE_SITE_REGION nudC DOWNSTREAM CG13024 INTRON nudC	TF binding site mE1_TFBS_sens
3L	12785417	3L_12785417_INS [dm3] 3L_12792317_INS [dm6]	A	TAT	2.614e^-4	0.639	INTRON Atg1 & 1 other
2R	4710783	2R_4710783_SNP [dm3] 2R_8823278_SNP [dm6]	C	T	2.617e^-4	0.639	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	19108758	3L_19108758_SNP [dm3] 3L_19115658_SNP [dm6]	T	C	2.618e^-4	0.639	INTRON CG14082
3R	24142499	3R_24142499_SNP [dm3] 3R_28316777_SNP [dm6]	T	G	2.623e^-4	0.639	INTERGENIC
2R	9474161	2R_9474161_SNP [dm3] 2R_13586656_SNP [dm6]	T	C	2.625e^-4	0.639	INTRON CG6191 & 1 other
2L	17503009	2L_17503009_SNP [dm3] 2L_17503009_SNP [dm6]	G	A	2.629e^-4	0.639	INTRON Dhc36C
X	15382927	X_15382927_SNP [dm3] X_15488894_SNP [dm6]	C	T	2.631e^-4	0.639	UPSTREAM Gmap INTRON Gmap
3L	5962361	3L_5962361_DEL [dm3] 3L_5969261_DEL [dm6]	TTCTGT	T	2.637e^-4	0.639	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	17282510	2R_17282510_SNP [dm3] 2R_21395005_SNP [dm6]	A	G	2.639e^-4	0.639	SYNONYMOUS_CODING Sdc UTR_5_PRIME Sdc
3R	9913721	3R_9913721_SNP [dm3] 3R_14087999_SNP [dm6]	A	C	2.653e^-4	0.639	DOWNSTREAM foxo INTERGENIC
2L	11189346	2L_11189346_SNP [dm3] 2L_11189346_SNP [dm6]	C	T	2.658e^-4	0.639	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7225779	2R_7225779_SNP [dm3] 2R_11338274_SNP [dm6]	G	T	2.665e^-4	0.639	NON_SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4335427	2L_4335427_SNP [dm3] 2L_4335427_SNP [dm6]	A	T	2.666e^-4	0.639	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25247391	3R_25247391_SNP [dm3] 3R_29421669_SNP [dm6]	A	G	2.669e^-4	0.639	INTRON Ptp99A
3L	9478455	3L_9478455_SNP [dm3] 3L_9485355_SNP [dm6]	T	A	2.672e^-4	0.639	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22242495	3L_22242495_SNP [dm3] 3L_22249395_SNP [dm6]	C	G	2.675e^-4	0.639	INTERGENIC
2R	1372750	2R_1372750_SNP [dm3] 2R_5485245_SNP [dm6]	C	T	2.681e^-4	0.639	INTRON CG30440
2R	18752637	2R_18752637_MNP [dm3] 2R_22865114_MNP [dm6]	TGA	ATT	2.690e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2421530	X_2421530_SNP [dm3] X_2527497_SNP [dm6]	A	G	2.700e^-4	0.639	INTRON trol
3R	24459794	3R_24459794_SNP [dm3] 3R_28634072_SNP [dm6]	A	G	2.704e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
3L	19068001	3L_19068001_SNP [dm3] 3L_19074901_SNP [dm6]	A	G	2.714e^-4	0.639	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl
3L	819759	3L_819759_SNP [dm3] 3L_819759_SNP [dm6]	A	G	2.716e^-4	0.639	UPSTREAM CR43883 INTERGENIC
3L	8405813	3L_8405813_SNP [dm3] 3L_8412713_SNP [dm6]	A	C	2.717e^-4	0.639	SYNONYMOUS_CODING Exo70 START_GAINED Oseg1 UTR_5_PRIME Oseg1 UPSTREAM mtrm	TF binding site mE1_TFBS_HSA
2L	11518633	2L_11518633_SNP [dm3] 2L_11518633_SNP [dm6]	T	A	2.717e^-4	0.639	NON_SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
3R	24147360	3R_24147360_SNP [dm3] 3R_28321638_SNP [dm6]	G	C	2.718e^-4	0.639	SYNONYMOUS_CODING larp	TF binding site mE1_TFBS_cad
2L	17107090	2L_17107090_SNP [dm3] 2L_17107090_SNP [dm6]	T	G	2.719e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12771300	2L_12771300_SNP [dm3] 2L_12771300_SNP [dm6]	C	T	2.722e^-4	0.639	INTERGENIC
3L	19120812	3L_19120812_SNP [dm3] 3L_19127712_SNP [dm6]	A	T	2.730e^-4	0.639	DOWNSTREAM Spn75F INTRON CG14082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10822275	2R_10822275_SNP [dm3] 2R_14934770_SNP [dm6]	C	T	2.736e^-4	0.639	UPSTREAM Lap1 DOWNSTREAM CG12853 INTRON CG10253	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	15191216	3R_15191216_SNP [dm3] 3R_19365494_SNP [dm6]	C	T	2.736e^-4	0.639	INTERGENIC
2R	18025452	2R_18025452_SNP [dm3] 2R_22137947_SNP [dm6]	T	A	2.737e^-4	0.639	UTR_5_PRIME a UPSTREAM CG11269 INTRON a
2L	17154088	2L_17154088_SNP [dm3] 2L_17154088_SNP [dm6]	T	C	2.744e^-4	0.639	INTRON beat-IIIa & 1 other
2R	17684654	2R_17684654_DEL [dm3] 2R_21797149_DEL [dm6]	AA	A	2.750e^-4	0.639	DOWNSTREAM CG34204 & 1 other INTERGENIC
3R	18480702	3R_18480702_SNP [dm3] 3R_22654980_SNP [dm6]	A	C	2.753e^-4	0.639	INTRON CG45058
3R	10781261	3R_10781261_SNP [dm3] 3R_14955539_SNP [dm6]	T	A	2.760e^-4	0.639	INTERGENIC
2L	11006666	2L_11006666_SNP [dm3] 2L_11006666_SNP [dm6]	A	G	2.761e^-4	0.639	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10337900	X_10337900_SNP [dm3] X_10443867_SNP [dm6]	C	T	2.767e^-4	0.639	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2R	4170593	2R_4170593_SNP [dm3] 2R_8283088_SNP [dm6]	A	T	2.774e^-4	0.639	INTERGENIC
3R	15191310	3R_15191310_SNP [dm3] 3R_19365588_SNP [dm6]	A	T	2.774e^-4	0.639	INTERGENIC
3R	22603290	3R_22603290_SNP [dm3] 3R_26777568_SNP [dm6]	T	G	2.791e^-4	0.639	INTERGENIC
3R	17894045	3R_17894045_SNP [dm3] 3R_22068323_SNP [dm6]	T	G	2.798e^-4	0.639	INTRON how	TF binding site mE1_TFBS_HSA
2L	8840501	2L_8840501_SNP [dm3] 2L_8840501_SNP [dm6]	C	T	2.800e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17132200	2L_17132200_SNP [dm3] 2L_17132200_SNP [dm6]	T	C	2.802e^-4	0.639	INTRON beat-IIIa & 1 other
3R	24459665	3R_24459665_SNP [dm3] 3R_28633943_SNP [dm6]	C	T	2.816e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
3R	13875526	3R_13875526_SNP [dm3] 3R_18049804_SNP [dm6]	T	A	2.819e^-4	0.639	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25777794	3R_25777794_SNP [dm3] 3R_29952072_SNP [dm6]	A	G	2.820e^-4	0.639	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22527071	3R_22527071_INS [dm3] 3R_26701349_INS [dm6]	A	ACATACATA	2.820e^-4	0.639	INTRON amon
3R	24458454	3R_24458454_SNP [dm3] 3R_28632732_SNP [dm6]	T	C	2.822e^-4	0.639	INTRON CG10011	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	14981522	3L_14981522_SNP [dm3] 3L_14988422_SNP [dm6]	G	A	2.822e^-4	0.639	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18155052	3L_18155052_SNP [dm3] 3L_18161952_SNP [dm6]	A	T	2.826e^-4	0.639	INTRON CG13699
3L	19094116	3L_19094116_SNP [dm3] 3L_19101016_SNP [dm6]	A	G	2.827e^-4	0.639	UPSTREAM Gem2 INTERGENIC
2L	1307848	2L_1307848_INS [dm3] 2L_1307848_INS [dm6]	C	CACC	2.835e^-4	0.639	INTERGENIC
2L	16447727	2L_16447727_SNP [dm3] 2L_16447727_SNP [dm6]	G	T	2.836e^-4	0.639	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
3L	10285017	3L_10285017_INS [dm3] 3L_10291917_INS [dm6]	A	AA	2.843e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18074994	3L_18074994_SNP [dm3] 3L_18081894_SNP [dm6]	C	T	2.845e^-4	0.639	INTRON CR43253
3L	18155170	3L_18155170_SNP [dm3] 3L_18162070_SNP [dm6]	C	A	2.846e^-4	0.639	INTRON CG13699
2L	12094077	2L_12094077_SNP [dm3] 2L_12094077_SNP [dm6]	C	G	2.847e^-4	0.639	NON_SYNONYMOUS_CODING Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8829850	2L_8829850_DEL [dm3] 2L_8829850_DEL [dm6]	CC	C	2.849e^-4	0.639	DOWNSTREAM SoxN INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3827304	X_3827304_SNP [dm3] X_3933271_SNP [dm6]	A	G	2.856e^-4	0.639	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19039052	3L_19039052_SNP [dm3] 3L_19045952_SNP [dm6]	C	T	2.864e^-4	0.639	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22131021	3L_22131021_SNP [dm3] 3L_22137921_SNP [dm6]	C	T	2.871e^-4	0.639	INTRON olf413	TF binding site mE1_TFBS_Trl
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	2.879e^-4	0.639	SYNONYMOUS_CODING CG15523
2R	19364107	2R_19364107_SNP [dm3] 2R_23476584_SNP [dm6]	A	G	2.890e^-4	0.639	UPSTREAM CG13557 DOWNSTREAM CR43793 INTRON CG43795 EXON CR43792
X	1559778	X_1559778_SNP [dm3] X_1665745_SNP [dm6]	T	C	2.893e^-4	0.639	SYNONYMOUS_CODING dor DOWNSTREAM br INTRON Mur2B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8771957	2L_8771957_SNP [dm3] 2L_8771957_SNP [dm6]	A	T	2.896e^-4	0.639	NON_SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
3R	18468511	3R_18468511_SNP [dm3] 3R_22642789_SNP [dm6]	T	G	2.897e^-4	0.639	INTRON CG45058
2R	18043715	2R_18043715_SNP [dm3] 2R_22156210_SNP [dm6]	A	T	2.897e^-4	0.639	INTRON a	TF binding site BDTNP1_TFBS_da
3R	23866013	3R_23866013_SNP [dm3] 3R_28040291_SNP [dm6]	G	C	2.898e^-4	0.639	INTRON CG34362
3R	23507074	3R_23507074_SNP [dm3] 3R_27681352_SNP [dm6]	A	G	2.900e^-4	0.639	SYNONYMOUS_CODING Sce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25229259	3R_25229259_SNP [dm3] 3R_29403537_SNP [dm6]	A	G	2.900e^-4	0.639	INTRON Ptp99A
3L	8276497	3L_8276497_SNP [dm3] 3L_8283397_SNP [dm6]	T	C	2.902e^-4	0.639	SYNONYMOUS_CODING cert DOWNSTREAM Dscam4
3R	25137741	3R_25137741_SNP [dm3] 3R_29312019_SNP [dm6]	C	T	2.910e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_sens
2L	17132939	2L_17132939_SNP [dm3] 2L_17132939_SNP [dm6]	T	C	2.911e^-4	0.639	INTRON beat-IIIa & 1 other
3R	4101434	3R_4101434_SNP [dm3] 3R_8275712_SNP [dm6]	C	G	2.922e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5833616	2R_5833616_SNP [dm3] 2R_9946111_SNP [dm6]	C	T	2.928e^-4	0.639	INTRON Mef2
2L	2998988	2L_2998988_SNP [dm3] 2L_2998988_SNP [dm6]	A	C	2.928e^-4	0.639	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
2L	8772915	2L_8772915_DEL [dm3] 2L_8772915_DEL [dm6]	GACTT	A	2.929e^-4	0.639	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3R	13738002	3R_13738002_SNP [dm3] 3R_17912280_SNP [dm6]	A	T	2.933e^-4	0.639	DOWNSTREAM CG43445 INTRON Rim
3R	13950954	3R_13950954_SNP [dm3] 3R_18125232_SNP [dm6]	T	C	2.934e^-4	0.639	INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	13269559	3R_13269559_SNP [dm3] 3R_17443837_SNP [dm6]	T	C	2.935e^-4	0.639	SYNONYMOUS_CODING CG5873	TF binding site mE1_TFBS_inv
3L	19085383	3L_19085383_SNP [dm3] 3L_19092283_SNP [dm6]	T	C	2.947e^-4	0.639	UPSTREAM MESR6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8772018	2L_8772018_SNP [dm3] 2L_8772018_SNP [dm6]	C	T	2.956e^-4	0.639	SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
3L	819758	3L_819758_SNP [dm3] 3L_819758_SNP [dm6]	A	G	2.958e^-4	0.639	INTERGENIC
2R	14418998	2R_14418998_SNP [dm3] 2R_18531493_SNP [dm6]	T	C	2.960e^-4	0.639	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24466073	3R_24466073_SNP [dm3] 3R_28640351_SNP [dm6]	G	A	2.960e^-4	0.639	INTERGENIC
3R	24306703	3R_24306703_SNP [dm3] 3R_28480981_SNP [dm6]	T	A	2.965e^-4	0.639	INTERGENIC
X	12261553	X_12261553_SNP [dm3] X_12367520_SNP [dm6]	T	A	2.966e^-4	0.639	INTERGENIC
2L	10553084	2L_10553084_SNP [dm3] 2L_10553084_SNP [dm6]	T	G	2.968e^-4	0.639	INTRON Trim9	TF binding site mE1_TFBS_HSA
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	2.977e^-4	0.639	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11682526	X_11682526_INS [dm3] X_11788493_INS [dm6]	C	CGC	2.978e^-4	0.639	UTR_5_PRIME Karl UPSTREAM Karl INTRON Karl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8125091	2R_8125091_INS [dm3] 2R_12237586_INS [dm6]	C	TTTTGATTGAGTTTG...	2.978e^-4	0.639	INTERGENIC
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	2.978e^-4	0.639	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8335193	2L_8335193_SNP [dm3] 2L_8335193_SNP [dm6]	C	G	2.982e^-4	0.639	INTERGENIC
2R	7046649	2R_7046649_SNP [dm3] 2R_11159144_SNP [dm6]	A	C	2.983e^-4	0.639	UTR_5_PRIME shn INTRON CG13229	TF binding site BDTNP1_TFBS_twi
3R	12757079	3R_12757079_SNP [dm3] 3R_16931357_SNP [dm6]	T	A	2.987e^-4	0.639	INTRON Abd-B
2L	17099020	2L_17099020_SNP [dm3] 2L_17099020_SNP [dm6]	G	C	2.997e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19091249	3L_19091249_SNP [dm3] 3L_19098149_SNP [dm6]	G	C	3.005e^-4	0.639	UTR_5_PRIME CG14079 UPSTREAM CG10424 DOWNSTREAM Gem2	TF binding site mE1_TFBS_cad
2R	17985771	2R_17985771_SNP [dm3] 2R_22098266_SNP [dm6]	A	C	3.008e^-4	0.639	INTRON CG11073
2R	16722625	2R_16722625_SNP [dm3] 2R_20835120_SNP [dm6]	C	T	3.011e^-4	0.639	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14081885	2R_14081885_SNP [dm3] 2R_18194380_SNP [dm6]	A	T	3.011e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19700957	2R_19700957_SNP [dm3] 2R_23813434_SNP [dm6]	T	C	3.015e^-4	0.639	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
3L	2086013	3L_2086013_SNP [dm3] 3L_2086013_SNP [dm6]	C	G	3.029e^-4	0.639	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7857507	3R_7857507_SNP [dm3] 3R_12031785_SNP [dm6]	C	A	3.035e^-4	0.639	UPSTREAM CG31358 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16185055	3L_16185055_DEL [dm3] 3L_16191955_DEL [dm6]	AGTGGCGCA	A	3.035e^-4	0.639	INTERGENIC
3R	24198732	3R_24198732_SNP [dm3] 3R_28373010_SNP [dm6]	A	G	3.055e^-4	0.639	INTERGENIC
3L	2284495	3L_2284495_SNP [dm3] 3L_2284495_SNP [dm6]	T	G	3.059e^-4	0.639	INTRON MsR2
2L	12094121	2L_12094121_SNP [dm3] 2L_12094121_SNP [dm6]	T	A	3.066e^-4	0.639	INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13751326	2L_13751326_INS [dm3] 2L_13751326_INS [dm6]	T	TGGT	3.066e^-4	0.639	INTRON CR44846 & 1 other
3L	15708693	3L_15708693_SNP [dm3] 3L_15715593_SNP [dm6]	C	T	3.068e^-4	0.639	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11237900	X_11237900_SNP [dm3] X_11343867_SNP [dm6]	T	C	3.074e^-4	0.639	SYNONYMOUS_CODING CG34348 DOWNSTREAM CG1597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27128677	3R_27128677_SNP [dm3] 3R_31302955_SNP [dm6]	T	C	3.074e^-4	0.639	SYNONYMOUS_CODING CG11340
2L	15049710	2L_15049710_SNP [dm3] 2L_15049710_SNP [dm6]	A	T	3.075e^-4	0.639	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3R	18036586	3R_18036586_SNP [dm3] 3R_22210864_SNP [dm6]	T	G	3.076e^-4	0.639	UPSTREAM Gld2 INTRON SKIP
3R	8236809	3R_8236809_SNP [dm3] 3R_12411087_SNP [dm6]	A	G	3.080e^-4	0.639	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19853310	2R_19853310_SNP [dm3] 2R_23965787_SNP [dm6]	G	A	3.081e^-4	0.639	SYNONYMOUS_CODING Alas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2695829	3R_2695829_SNP [dm3] 3R_6870107_SNP [dm6]	A	T	3.082e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1632388	2L_1632388_SNP [dm3] 2L_1632388_SNP [dm6]	T	A	3.088e^-4	0.639	INTERGENIC
2L	3139919	2L_3139919_DEL [dm3] 2L_3139919_DEL [dm6]	CAGC	C	3.095e^-4	0.639	INTRON toc
3L	12784873	3L_12784873_SNP [dm3] 3L_12791773_SNP [dm6]	G	A	3.099e^-4	0.639	INTRON Atg1 & 1 other
2L	17137515	2L_17137515_SNP [dm3] 2L_17137515_SNP [dm6]	G	A	3.100e^-4	0.639	INTRON beat-IIIa & 1 other
2L	18570697	2L_18570697_SNP [dm3] 2L_18570697_SNP [dm6]	C	A	3.100e^-4	0.639	INTRON Pde11
X	805317	X_805317_SNP [dm3] X_911284_SNP [dm6]	C	T	3.103e^-4	0.639	INTRON CG43867
2L	12094114	2L_12094114_SNP [dm3] 2L_12094114_SNP [dm6]	G	A	3.105e^-4	0.639	SPLICE_SITE_REGION Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12785428	3L_12785428_SNP [dm3] 3L_12792328_SNP [dm6]	G	A	3.105e^-4	0.639	INTRON Atg1 & 1 other
X	1559886	X_1559886_SNP [dm3] X_1665853_SNP [dm6]	A	C	3.110e^-4	0.639	SYNONYMOUS_CODING dor DOWNSTREAM br INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19123576	3L_19123576_SNP [dm3] 3L_19130476_SNP [dm6]	C	T	3.112e^-4	0.639	UPSTREAM Spn75F INTRON CG14082
2L	14657438	2L_14657438_SNP [dm3] 2L_14657438_SNP [dm6]	T	A	3.122e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
2R	7151209	2R_7151209_SNP [dm3] 2R_11263704_SNP [dm6]	T	C	3.123e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_ttk
3L	819749	3L_819749_SNP [dm3] 3L_819749_SNP [dm6]	A	T	3.126e^-4	0.639	INTERGENIC
2L	14657416	2L_14657416_SNP [dm3] 2L_14657416_SNP [dm6]	T	A	3.131e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
3R	25551682	3R_25551682_SNP [dm3] 3R_29725960_SNP [dm6]	A	T	3.139e^-4	0.639	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6737724	2L_6737724_SNP [dm3] 2L_6737724_SNP [dm6]	G	A	3.141e^-4	0.639	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15798310	2L_15798310_SNP [dm3] 2L_15798310_SNP [dm6]	A	G	3.146e^-4	0.639	INTERGENIC
2L	17107636	2L_17107636_SNP [dm3] 2L_17107636_SNP [dm6]	A	G	3.150e^-4	0.639	INTERGENIC
3R	3518660	3R_3518660_SNP [dm3] 3R_7692938_SNP [dm6]	C	A	3.152e^-4	0.639	NON_SYNONYMOUS_CODING Nlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12802190	2L_12802190_SNP [dm3] 2L_12802190_SNP [dm6]	G	A	3.156e^-4	0.639	INTERGENIC
2L	7604986	2L_7604986_SNP [dm3] 2L_7604986_SNP [dm6]	C	A	3.157e^-4	0.639	UPSTREAM Cyp4d21 DOWNSTREAM CR45370 INTERGENIC
2R	18025430	2R_18025430_SNP [dm3] 2R_22137925_SNP [dm6]	G	C	3.158e^-4	0.639	START_GAINED a UTR_5_PRIME a UPSTREAM CG11269 INTRON a
X	7723300	X_7723300_SNP [dm3] X_7829267_SNP [dm6]	T	C	3.162e^-4	0.639	INTRON CG1402
X	8545712	X_8545712_SNP [dm3] X_8651679_SNP [dm6]	T	C	3.168e^-4	0.639	UPSTREAM oc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15765333	3L_15765333_DEL [dm3] 3L_15772233_DEL [dm6]	CT	C	3.169e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8617499	2R_8617499_SNP [dm3] 2R_12729994_SNP [dm6]	G	A	3.169e^-4	0.639	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2L	16777859	2L_16777859_SNP [dm3] 2L_16777859_SNP [dm6]	A	T	3.169e^-4	0.639	INTRON Mhc
2R	14416310	2R_14416310_SNP [dm3] 2R_18528805_SNP [dm6]	G	C	3.169e^-4	0.639	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14700604	3L_14700604_SNP [dm3] 3L_14707504_SNP [dm6]	C	T	3.169e^-4	0.639	INTRON ome	TF binding site mE1_TFBS_inv
3R	26154872	3R_26154872_SNP [dm3] 3R_30329150_SNP [dm6]	A	T	3.171e^-4	0.639	INTRON hdc
3R	9954837	3R_9954837_SNP [dm3] 3R_14129115_SNP [dm6]	A	C	3.171e^-4	0.639	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16780298	2L_16780298_SNP [dm3] 2L_16780298_SNP [dm6]	C	T	3.173e^-4	0.639	INTRON Mhc
3L	7955214	3L_7955214_SNP [dm3] 3L_7962114_SNP [dm6]	T	G	3.173e^-4	0.639	INTERGENIC
2L	3947860	2L_3947860_SNP [dm3] 2L_3947860_SNP [dm6]	G	C	3.192e^-4	0.639	INTRON fred	TF binding site mE1_TFBS_inv
2R	9608327	2R_9608327_SNP [dm3] 2R_13720822_SNP [dm6]	A	G	3.194e^-4	0.639	INTRON fas
3R	26796434	3R_26796434_SNP [dm3] 3R_30970712_SNP [dm6]	G	T	3.197e^-4	0.639	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16165920	2L_16165920_SNP [dm3] 2L_16165920_SNP [dm6]	A	G	3.198e^-4	0.639	UTR_5_PRIME Ca-alpha1D
3R	19420476	3R_19420476_SNP [dm3] 3R_23594754_SNP [dm6]	A	G	3.199e^-4	0.639	INTRON CG16723
2R	18276534	2R_18276534_SNP [dm3] 2R_22389029_SNP [dm6]	G	A	3.202e^-4	0.639	INTRON CG13506
3R	26317887	3R_26317887_SNP [dm3] 3R_30492165_SNP [dm6]	A	C	3.203e^-4	0.639	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
X	20588138	X_20588138_SNP [dm3] X_20717111_SNP [dm6]	G	C	3.204e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	3.204e^-4	0.639	INTRON 5-HT1A
3R	22480585	3R_22480585_SNP [dm3] 3R_26654863_SNP [dm6]	G	T	3.210e^-4	0.639	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3R	22040170	3R_22040170_SNP [dm3] 3R_26214448_SNP [dm6]	T	G	3.216e^-4	0.639	INTERGENIC
3R	12568816	3R_12568816_SNP [dm3] 3R_16743094_SNP [dm6]	G	T	3.226e^-4	0.639	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	4040631	2L_4040631_INS [dm3] 2L_4040631_INS [dm6]	A	AT	3.234e^-4	0.639	INTRON ed
2R	8124548	2R_8124548_SNP [dm3] 2R_12237043_SNP [dm6]	G	T	3.235e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16164661	2L_16164661_INS [dm3] 2L_16164661_INS [dm6]	A	AT	3.238e^-4	0.639	INTERGENIC
3R	25161052	3R_25161052_SNP [dm3] 3R_29335330_SNP [dm6]	T	C	3.240e^-4	0.639	INTERGENIC
3L	6982501	3L_6982501_SNP [dm3] 3L_6989401_SNP [dm6]	C	A	3.241e^-4	0.639	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25777791	3R_25777791_DEL [dm3] 3R_29952069_DEL [dm6]	TT	T	3.246e^-4	0.639	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20850826	X_20850826_SNP [dm3] X_20979799_SNP [dm6]	A	C	3.248e^-4	0.639	DOWNSTREAM CG44426 INTERGENIC
3R	9951541	3R_9951541_SNP [dm3] 3R_14125819_SNP [dm6]	A	T	3.252e^-4	0.639	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11679493	X_11679493_SNP [dm3] X_11785460_SNP [dm6]	G	A	3.254e^-4	0.639	INTERGENIC
2R	8127904	2R_8127904_SNP [dm3] 2R_12240399_SNP [dm6]	C	A	3.256e^-4	0.639	UTR_5_PRIME CG13170 UPSTREAM CG43315
2L	8772299	2L_8772299_SNP [dm3] 2L_8772299_SNP [dm6]	G	C	3.256e^-4	0.639	NON_SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
2R	8125574	2R_8125574_INS [dm3] 2R_12238069_INS [dm6]	T	TACATTTTAA	3.257e^-4	0.639	INTERGENIC
2R	10379101	2R_10379101_SNP [dm3] 2R_14491596_SNP [dm6]	T	A	3.258e^-4	0.639	INTRON L
3L	16143420	3L_16143420_SNP [dm3] 3L_16150320_SNP [dm6]	G	A	3.260e^-4	0.639	INTRON CG5151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2563444	X_2563444_SNP [dm3] X_2669411_SNP [dm6]	G	A	3.262e^-4	0.639	INTRON sgg
3R	24307520	3R_24307520_SNP [dm3] 3R_28481798_SNP [dm6]	C	T	3.264e^-4	0.639	INTERGENIC
3L	14711018	3L_14711018_SNP [dm3] 3L_14717918_SNP [dm6]	T	G	3.264e^-4	0.639	INTRON ome
3R	10954860	3R_10954860_DEL [dm3] 3R_15129138_DEL [dm6]	AA	A	3.267e^-4	0.639	INTRON CG42788
3R	21959950	3R_21959950_SNP [dm3] 3R_26134228_SNP [dm6]	G	T	3.270e^-4	0.639	INTRON CG6142
3L	20576359	3L_20576359_SNP [dm3] 3L_20583259_SNP [dm6]	A	G	3.270e^-4	0.639	INTERGENIC
2L	11008882	2L_11008882_DEL [dm3] 2L_11008882_DEL [dm6]	AT	A	3.272e^-4	0.639	DOWNSTREAM Art8 INTRON Nup154
2L	10532056	2L_10532056_SNP [dm3] 2L_10532056_SNP [dm6]	C	T	3.277e^-4	0.639	DOWNSTREAM Lip4 INTRON CG18301
3R	2636722	3R_2636722_SNP [dm3] 3R_6811000_SNP [dm6]	T	A	3.278e^-4	0.639	INTRON CR42651	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14657423	2L_14657423_SNP [dm3] 2L_14657423_SNP [dm6]	C	A	3.286e^-4	0.639	INTRON osp	TF binding site mE1_TFBS_inv
X	2511597	X_2511597_SNP [dm3] X_2617564_SNP [dm6]	T	A	3.286e^-4	0.639	DOWNSTREAM Tsp3A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	9615144	3L_9615144_SNP [dm3] 3L_9622044_SNP [dm6]	A	G	3.295e^-4	0.639	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2R	16459345	2R_16459345_DEL [dm3] 2R_20571840_DEL [dm6]	GGG	C	3.304e^-4	0.639	INTRON qsm
2L	17158888	2L_17158888_SNP [dm3] 2L_17158888_SNP [dm6]	C	T	3.307e^-4	0.639	INTRON beat-IIIa & 1 other
3R	3498328	3R_3498328_SNP [dm3] 3R_7672606_SNP [dm6]	G	A	3.309e^-4	0.639	INTRON Nlg1
2L	15490947	2L_15490947_SNP [dm3] 2L_15490947_SNP [dm6]	G	T	3.313e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6220468	X_6220468_SNP [dm3] X_6326435_SNP [dm6]	G	T	3.313e^-4	0.639	NON_SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna
3L	5962136	3L_5962136_SNP [dm3] 3L_5969036_SNP [dm6]	G	T	3.324e^-4	0.639	SYNONYMOUS_CODING CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	12858078	3L_12858078_SNP [dm3] 3L_12864978_SNP [dm6]	A	G	3.329e^-4	0.639	INTERGENIC
2R	10391652	2R_10391652_SNP [dm3] 2R_14504147_SNP [dm6]	A	C	3.334e^-4	0.639	UTR_5_PRIME Asx UPSTREAM Asx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	9789531	3R_9789531_SNP [dm3] 3R_13963809_SNP [dm6]	C	T	3.335e^-4	0.639	SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_sens
2L	10027737	2L_10027737_SNP [dm3] 2L_10027737_SNP [dm6]	T	C	3.338e^-4	0.639	NON_SYNONYMOUS_CODING CG13127
2R	17188497	2R_17188497_SNP [dm3] 2R_21300992_SNP [dm6]	C	T	3.342e^-4	0.639	UPSTREAM CG42672 INTRON CG42672
2L	12084535	2L_12084535_SNP [dm3] 2L_12084535_SNP [dm6]	G	A	3.346e^-4	0.639	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6838369	3L_6838369_SNP [dm3] 3L_6845269_SNP [dm6]	C	T	3.347e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13751152	2L_13751152_SNP [dm3] 2L_13751152_SNP [dm6]	G	T	3.349e^-4	0.639	INTRON CR44846 & 1 other
2R	10364451	2R_10364451_SNP [dm3] 2R_14476946_SNP [dm6]	G	A	3.350e^-4	0.639	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	19125342	3L_19125342_SNP [dm3] 3L_19132242_SNP [dm6]	G	T	3.363e^-4	0.639	INTRON CG14082
2R	19158116	2R_19158116_SNP [dm3] 2R_23270593_SNP [dm6]	G	A	3.367e^-4	0.639	NON_SYNONYMOUS_CODING CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
3L	8413901	3L_8413901_SNP [dm3] 3L_8420801_SNP [dm6]	G	T	3.370e^-4	0.639	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	3.371e^-4	0.639	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
3R	26937420	3R_26937420_DEL [dm3] 3R_31111698_DEL [dm6]	GCCCGACCTTTTCCG...	G	3.374e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19253879	3R_19253879_SNP [dm3] 3R_23428157_SNP [dm6]	C	T	3.377e^-4	0.639	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2R	15857364	2R_15857364_SNP [dm3] 2R_19969859_SNP [dm6]	G	C	3.378e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25783364	3R_25783364_SNP [dm3] 3R_29957642_SNP [dm6]	T	A	3.378e^-4	0.639	INTRON TkR99D
3L	6550161	3L_6550161_SNP [dm3] 3L_6557061_SNP [dm6]	A	T	3.381e^-4	0.639	INTRON CG18769
3R	3438502	3R_3438502_SNP [dm3] 3R_7612780_SNP [dm6]	A	T	3.392e^-4	0.639	INTRON CG34127
3R	4642408	3R_4642408_SNP [dm3] 3R_8816686_SNP [dm6]	G	A	3.393e^-4	0.639	UTR_3_PRIME CG9821 DOWNSTREAM CG9821
3L	12491007	3L_12491007_SNP [dm3] 3L_12497907_SNP [dm6]	A	T	3.398e^-4	0.639	UPSTREAM CG10657 & 1 other DOWNSTREAM CG10638 INTERGENIC
3L	1827971	3L_1827971_SNP [dm3] 3L_1827971_SNP [dm6]	T	G	3.407e^-4	0.639	INTRON Cpr62Ba
3R	17840506	3R_17840506_SNP [dm3] 3R_22014784_SNP [dm6]	T	A	3.413e^-4	0.639	UTR_5_PRIME CG6332 DOWNSTREAM Eip93F	TF binding site mE1_TFBS_cad
2R	7046670	2R_7046670_SNP [dm3] 2R_11159165_SNP [dm6]	T	C	3.413e^-4	0.639	UTR_5_PRIME shn INTRON CG13229	TF binding site BDTNP1_TFBS_twi
2R	4691722	2R_4691722_SNP [dm3] 2R_8804217_SNP [dm6]	C	T	3.413e^-4	0.639	INTRON sns
3L	12785389	3L_12785389_SNP [dm3] 3L_12792289_SNP [dm6]	A	C	3.418e^-4	0.639	INTRON Atg1 & 1 other
3R	5679300	3R_5679300_SNP [dm3] 3R_9853578_SNP [dm6]	A	C	3.435e^-4	0.639	INTRON Teh1
2L	2669769	2L_2669769_SNP [dm3] 2L_2669769_SNP [dm6]	T	C	3.435e^-4	0.639	UPSTREAM Gr23a INTERGENIC
3R	25777300	3R_25777300_SNP [dm3] 3R_29951578_SNP [dm6]	C	A	3.436e^-4	0.639	SYNONYMOUS_CODING TkR99D	TF binding site mE1_TFBS_chinmo
3R	23113549	3R_23113549_SNP [dm3] 3R_27287827_SNP [dm6]	C	A	3.444e^-4	0.639	SYNONYMOUS_CODING bigmax UPSTREAM Hmu DOWNSTREAM CG3368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6847830	2R_6847830_SNP [dm3] 2R_10960325_SNP [dm6]	A	G	3.449e^-4	0.639	INTERGENIC
3R	5314964	3R_5314964_SNP [dm3] 3R_9489242_SNP [dm6]	A	G	3.455e^-4	0.639	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2636926	2L_2636926_SNP [dm3] 2L_2636926_SNP [dm6]	A	G	3.456e^-4	0.639	INTERGENIC
3L	3353794	3L_3353794_SNP [dm3] 3L_3353794_SNP [dm6]	T	C	3.459e^-4	0.639	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	2853535	3R_2853535_DEL [dm3] 3R_7027813_DEL [dm6]	AGCAATTCCCGGG...	A	3.461e^-4	0.639	INTERGENIC
3L	7841234	3L_7841234_INS [dm3] 3L_7848134_INS [dm6]	T	TT	3.465e^-4	0.639	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	1984443	2L_1984443_SNP [dm3] 2L_1984443_SNP [dm6]	T	A	3.466e^-4	0.639	UTR_3_PRIME CG7289 DOWNSTREAM Got2
2R	14188524	2R_14188524_SNP [dm3] 2R_18301019_SNP [dm6]	T	C	3.467e^-4	0.639	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9680259	3R_9680259_SNP [dm3] 3R_13854537_SNP [dm6]	G	A	3.471e^-4	0.639	DOWNSTREAM CG14362 INTERGENIC
3L	2059897	3L_2059897_SNP [dm3] 3L_2059897_SNP [dm6]	C	T	3.473e^-4	0.639	NON_SYNONYMOUS_CODING sls INTRON sls
2R	17278478	2R_17278478_SNP [dm3] 2R_21390973_SNP [dm6]	T	C	3.474e^-4	0.639	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3L	5962394	3L_5962394_SNP [dm3] 3L_5969294_SNP [dm6]	C	T	3.475e^-4	0.639	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	10315987	2L_10315987_SNP [dm3] 2L_10315987_SNP [dm6]	T	A	3.476e^-4	0.639	INTRON CG4972	TF binding site mE1_TFBS_sens
2L	16130018	2L_16130018_SNP [dm3] 2L_16130018_SNP [dm6]	G	C	3.478e^-4	0.639	INTERGENIC
2L	16805252	2L_16805252_INS [dm3] 2L_16805252_INS [dm6]	T	TTT	3.478e^-4	0.639	UTR_5_PRIME CG13272 INTRON CG13280
3L	17407920	3L_17407920_SNP [dm3] 3L_17414820_SNP [dm6]	C	T	3.480e^-4	0.639	INTRON blot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	19125502	3L_19125502_SNP [dm3] 3L_19132402_SNP [dm6]	A	G	3.485e^-4	0.639	INTRON CG14082
2R	15838332	2R_15838332_SNP [dm3] 2R_19950827_SNP [dm6]	G	C	3.486e^-4	0.639	UPSTREAM CG10822 INTERGENIC
3R	4623515	3R_4623515_SNP [dm3] 3R_8797793_SNP [dm6]	G	C	3.493e^-4	0.639	NON_SYNONYMOUS_CODING Pif1A START_GAINED Pif1B UTR_5_PRIME Pif1B DOWNSTREAM Ir85a
3R	12747756	3R_12747756_INS [dm3] 3R_16922034_INS [dm6]	A	ACA	3.497e^-4	0.639	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14680736	3L_14680736_SNP [dm3] 3L_14687636_SNP [dm6]	T	C	3.499e^-4	0.639	INTRON ome
3R	14708561	3R_14708561_SNP [dm3] 3R_18882839_SNP [dm6]	C	T	3.502e^-4	0.639	INTERGENIC
3R	25771394	3R_25771394_SNP [dm3] 3R_29945672_SNP [dm6]	A	G	3.504e^-4	0.639	SYNONYMOUS_CODING CG15523
2L	8831065	2L_8831065_SNP [dm3] 2L_8831065_SNP [dm6]	C	T	3.504e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19033895	3L_19033895_SNP [dm3] 3L_19040795_SNP [dm6]	C	A	3.505e^-4	0.639	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7431914	X_7431914_SNP [dm3] X_7537881_SNP [dm6]	T	A	3.505e^-4	0.639	UPSTREAM CG32720 INTRON CG32719	TF binding site mE1_TFBS_Trl
3R	13875508	3R_13875508_SNP [dm3] 3R_18049786_SNP [dm6]	T	A	3.508e^-4	0.639	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15639646	3R_15639646_SNP [dm3] 3R_19813924_SNP [dm6]	C	G	3.512e^-4	0.639	INTRON bnl
3L	16962695	3L_16962695_SNP [dm3] 3L_16969595_SNP [dm6]	A	G	3.515e^-4	0.639	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3R	12757086	3R_12757086_SNP [dm3] 3R_16931364_SNP [dm6]	T	C	3.517e^-4	0.639	INTRON Abd-B
3L	10024856	3L_10024856_SNP [dm3] 3L_10031756_SNP [dm6]	C	T	3.528e^-4	0.639	INTRON dpr6
3L	22159403	3L_22159403_SNP [dm3] 3L_22166303_SNP [dm6]	A	C	3.528e^-4	0.639	INTRON olf413
2L	12200925	2L_12200925_DEL [dm3] 2L_12200925_DEL [dm6]	AAATG	A	3.533e^-4	0.639	UPSTREAM aret INTRON aret
3R	25207706	3R_25207706_SNP [dm3] 3R_29381984_SNP [dm6]	C	T	3.542e^-4	0.639	INTRON Ptp99A
2L	9598520	2L_9598520_DEL [dm3] 2L_9598520_DEL [dm6]	GATG	G	3.544e^-4	0.639	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	4631427	3R_4631427_SNP [dm3] 3R_8805705_SNP [dm6]	C	A	3.548e^-4	0.639	SPLICE_SITE_REGION CG9839 UPSTREAM hng2 & 1 other INTRON Tcp-1eta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24147210	3R_24147210_SNP [dm3] 3R_28321488_SNP [dm6]	A	T	3.548e^-4	0.639	SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2596000	X_2596000_SNP [dm3] X_2701967_SNP [dm6]	C	T	3.548e^-4	0.639	SYNONYMOUS_CODING Csat DOWNSTREAM CG2662	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24235477	3R_24235477_SNP [dm3] 3R_28409755_SNP [dm6]	T	C	3.556e^-4	0.639	INTERGENIC
3R	23180856	3R_23180856_SNP [dm3] 3R_27355134_SNP [dm6]	G	C	3.561e^-4	0.639	INTRON CG42534
X	1490499	X_1490499_SNP [dm3] X_1596466_SNP [dm6]	A	G	3.565e^-4	0.639	INTRON br & 1 other	TF binding site mE1_TFBS_chinmo
2L	8772570	2L_8772570_SNP [dm3] 2L_8772570_SNP [dm6]	G	C	3.567e^-4	0.639	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3R	18080245	3R_18080245_SNP [dm3] 3R_22254523_SNP [dm6]	T	C	3.579e^-4	0.639	INTRON SKIP
2R	7692170	2R_7692170_INS [dm3] 2R_11804665_INS [dm6]	A	AATATAAG	3.582e^-4	0.639	INTRON ths	TF binding site mE1_TFBS_cad
X	4296533	X_4296533_SNP [dm3] X_4402500_SNP [dm6]	A	T	3.583e^-4	0.639	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16720325	2R_16720325_SNP [dm3] 2R_20832820_SNP [dm6]	A	G	3.589e^-4	0.639	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18033144	3L_18033144_SNP [dm3] 3L_18040044_SNP [dm6]	A	T	3.596e^-4	0.639	UPSTREAM CG32192 INTRON Eip75B
3L	19099485	3L_19099485_INS [dm3] 3L_19106385_INS [dm6]	A	ATAATA	3.600e^-4	0.639	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	16699358	3L_16699358_SNP [dm3] 3L_16706258_SNP [dm6]	G	T	3.603e^-4	0.639	UTR_3_PRIME CG9692 INTRON Lasp & 1 other
3R	12747765	3R_12747765_SNP [dm3] 3R_16922043_SNP [dm6]	C	A	3.610e^-4	0.639	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17407394	3L_17407394_SNP [dm3] 3L_17414294_SNP [dm6]	A	G	3.610e^-4	0.639	INTRON blot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9085129	3L_9085129_SNP [dm3] 3L_9092029_SNP [dm6]	A	G	3.620e^-4	0.639	UTR_3_PRIME Tequila
3R	14721438	3R_14721438_SNP [dm3] 3R_18895716_SNP [dm6]	G	A	3.624e^-4	0.639	INTERGENIC
X	6318644	X_6318644_SNP [dm3] X_6424611_SNP [dm6]	G	A	3.624e^-4	0.639	INTRON CG42340
2L	14004898	2L_14004898_SNP [dm3] 2L_14004898_SNP [dm6]	G	A	3.629e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4744285	2R_4744285_INS [dm3] 2R_8856780_INS [dm6]	T	TTTA	3.630e^-4	0.639	DOWNSTREAM sns INTERGENIC
2L	8772069	2L_8772069_SNP [dm3] 2L_8772069_SNP [dm6]	A	G	3.640e^-4	0.639	SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
3R	4624721	3R_4624721_SNP [dm3] 3R_8798999_SNP [dm6]	G	A	3.640e^-4	0.639	INTRON Pif1A & 1 other
2L	17177970	2L_17177970_SNP [dm3] 2L_17177970_SNP [dm6]	T	C	3.641e^-4	0.639	UPSTREAM Gr36b DOWNSTREAM Gr36a INTERGENIC
3R	4624811	3R_4624811_SNP [dm3] 3R_8799089_SNP [dm6]	T	C	3.648e^-4	0.639	INTRON Pif1A & 1 other
3R	25210180	3R_25210180_SNP [dm3] 3R_29384458_SNP [dm6]	G	C	3.651e^-4	0.639	INTRON Ptp99A
3L	9612073	3L_9612073_SNP [dm3] 3L_9618973_SNP [dm6]	T	C	3.653e^-4	0.639	INTRON LanB2	TF binding site mE1_TFBS_cad
2R	18043958	2R_18043958_SNP [dm3] 2R_22156453_SNP [dm6]	C	T	3.655e^-4	0.639	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15850080	3R_15850080_SNP [dm3] 3R_20024358_SNP [dm6]	T	G	3.661e^-4	0.639	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.974e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05058

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.631	0.022
In_2R_NS	5.0008	0.0821

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1739 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12590423	3R_12590423_SNP [dm3] 3R_16764701_SNP [dm6]	A	T	1.824e^-6	0.915	UPSTREAM tre-3 DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7526647	2R_7526647_SNP [dm3] 2R_11639142_SNP [dm6]	G	T	2.175e^-6	0.915	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12589603	3R_12589603_SNP [dm3] 3R_16763881_SNP [dm6]	C	T	2.597e^-6	0.915	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18290522	2R_18290522_SNP [dm3] 2R_22403017_SNP [dm6]	G	T	3.384e^-6	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	15811757	X_15811757_SNP [dm3] X_15917724_SNP [dm6]	C	T	4.152e^-6	0.915	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25074273	3R_25074273_SNP [dm3] 3R_29248551_SNP [dm6]	A	C	4.416e^-6	0.915	INTRON SP1029
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	5.158e^-6	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18290528	2R_18290528_SNP [dm3] 2R_22403023_SNP [dm6]	T	A	5.868e^-6	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	3217939	3R_3217939_SNP [dm3] 3R_7392217_SNP [dm6]	G	T	6.958e^-6	0.915	UTR_3_PRIME CG42650
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	7.491e^-6	0.915	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18290446	2R_18290446_SNP [dm3] 2R_22402941_SNP [dm6]	T	C	7.493e^-6	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7037861	2R_7037861_DEL [dm3] 2R_11150356_DEL [dm6]	CC	C	7.602e^-6	0.915	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16790786	3L_16790786_DEL [dm3] 3L_16797686_DEL [dm6]	CTT	AC	7.606e^-6	0.915	INTRON CG9674
3L	22270205	3L_22270205_SNP [dm3] 3L_22277105_SNP [dm6]	C	A	7.777e^-6	0.915	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
3L	22284679	3L_22284679_SNP [dm3] 3L_22291579_SNP [dm6]	C	T	9.611e^-6	0.915	NON_SYNONYMOUS_CODING Aats-ile
3L	10551899	3L_10551899_SNP [dm3] 3L_10558799_SNP [dm6]	T	G	9.612e^-6	0.915	INTRON A2bp1 & 1 other
2R	18290506	2R_18290506_SNP [dm3] 2R_22403001_SNP [dm6]	C	T	9.637e^-6	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	22154467	3L_22154467_SNP [dm3] 3L_22161367_SNP [dm6]	A	G	9.921e^-6	0.915	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2124783	2L_2124783_SNP [dm3] 2L_2124783_SNP [dm6]	G	C	1.041e^-5	0.915	INTERGENIC
3R	12590079	3R_12590079_SNP [dm3] 3R_16764357_SNP [dm6]	G	T	1.121e^-5	0.915	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19370364	2R_19370364_SNP [dm3] 2R_23482841_SNP [dm6]	C	T	1.351e^-5	0.915	INTRON CG43795
2R	7526582	2R_7526582_SNP [dm3] 2R_11639077_SNP [dm6]	C	T	1.403e^-5	0.915	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19381705	2R_19381705_SNP [dm3] 2R_23494182_SNP [dm6]	G	T	1.404e^-5	0.915	INTERGENIC
2R	19357621	2R_19357621_SNP [dm3] 2R_23470098_SNP [dm6]	C	G	1.449e^-5	0.915	DOWNSTREAM Or59b INTRON CG43795
2R	17190805	2R_17190805_SNP [dm3] 2R_21303300_SNP [dm6]	T	A	1.533e^-5	0.915	INTRON CG42672
2R	15960988	2R_15960988_SNP [dm3] 2R_20073483_SNP [dm6]	A	G	1.576e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6202293	2R_6202293_SNP [dm3] 2R_10314788_SNP [dm6]	C	T	1.744e^-5	0.915	INTRON Ndg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	18290525	2R_18290525_SNP [dm3] 2R_22403020_SNP [dm6]	A	G	1.774e^-5	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	5099520	2R_5099520_SNP [dm3] 2R_9212015_SNP [dm6]	A	G	1.884e^-5	0.915	INTERGENIC
3R	12590912	3R_12590912_SNP [dm3] 3R_16765190_SNP [dm6]	G	A	1.893e^-5	0.915	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4692197	2R_4692197_SNP [dm3] 2R_8804692_SNP [dm6]	A	G	1.963e^-5	0.915	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15121035	2L_15121035_INS [dm3] 2L_15121035_INS [dm6]	T	TT	2.013e^-5	0.915	DOWNSTREAM CR43853 INTERGENIC
2L	2110938	2L_2110938_SNP [dm3] 2L_2110938_SNP [dm6]	T	C	2.097e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15291583	2R_15291583_SNP [dm3] 2R_19404078_SNP [dm6]	C	G	2.164e^-5	0.915	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8010326	3R_8010326_SNP [dm3] 3R_12184604_SNP [dm6]	T	G	2.182e^-5	0.915	INTERGENIC
2R	17917261	2R_17917261_SNP [dm3] 2R_22029756_SNP [dm6]	C	T	2.390e^-5	0.915	INTRON CG34370
2R	16227068	2R_16227068_SNP [dm3] 2R_20339563_SNP [dm6]	C	A	2.516e^-5	0.915	INTERGENIC
2R	18290499	2R_18290499_INS [dm3] 2R_22402994_INS [dm6]	G	ATGT	2.548e^-5	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19343739	2R_19343739_SNP [dm3] 2R_23456216_SNP [dm6]	C	A	2.565e^-5	0.915	UTR_5_PRIME CG43795
2R	19356809	2R_19356809_SNP [dm3] 2R_23469286_SNP [dm6]	T	G	2.567e^-5	0.915	DOWNSTREAM Or59b INTRON CG43795
2L	2110931	2L_2110931_SNP [dm3] 2L_2110931_SNP [dm6]	T	A	2.574e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7380517	3L_7380517_SNP [dm3] 3L_7387417_SNP [dm6]	A	G	2.577e^-5	0.915	UPSTREAM CG8564 INTRON CG8564	TF binding site mE1_TFBS_cad
3L	22556620	3L_22556620_SNP [dm3] 3L_22563520_SNP [dm6]	G	C	2.618e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18565090	2R_18565090_SNP [dm3] 2R_22677585_SNP [dm6]	T	C	2.687e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1433218	2L_1433218_SNP [dm3] 2L_1433218_SNP [dm6]	T	A	2.815e^-5	0.915	DOWNSTREAM snRNA:U3:22A INTERGENIC
3R	24306910	3R_24306910_DEL [dm3] 3R_28481188_DEL [dm6]	GTACCTGCATATAGG...	G	2.907e^-5	0.915	INTERGENIC
3R	12590711	3R_12590711_SNP [dm3] 3R_16764989_SNP [dm6]	T	A	2.949e^-5	0.915	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	22269526	3L_22269526_SNP [dm3] 3L_22276426_SNP [dm6]	T	C	2.980e^-5	0.915	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
3L	13147927	3L_13147927_SNP [dm3] 3L_13154827_SNP [dm6]	T	G	3.009e^-5	0.915	INTERGENIC
3L	11037609	3L_11037609_SNP [dm3] 3L_11044509_SNP [dm6]	A	G	3.019e^-5	0.915	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	9474420	2R_9474420_SNP [dm3] 2R_13586915_SNP [dm6]	A	G	3.040e^-5	0.915	INTRON CG6191 & 1 other
2R	6201012	2R_6201012_SNP [dm3] 2R_10313507_SNP [dm6]	C	T	3.087e^-5	0.915	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14681176	3L_14681176_SNP [dm3] 3L_14688076_SNP [dm6]	T	C	3.144e^-5	0.915	INTRON ome
3L	11321596	3L_11321596_SNP [dm3] 3L_11328496_SNP [dm6]	G	A	3.185e^-5	0.915	INTERGENIC
2R	18290492	2R_18290492_SNP [dm3] 2R_22402987_SNP [dm6]	G	T	3.201e^-5	0.915	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9614949	2L_9614949_SNP [dm3] 2L_9614949_SNP [dm6]	T	C	3.217e^-5	0.915	INTRON Trx-2
3L	19099406	3L_19099406_SNP [dm3] 3L_19106306_SNP [dm6]	G	A	3.230e^-5	0.915	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
2R	19360124	2R_19360124_SNP [dm3] 2R_23472601_SNP [dm6]	T	C	3.249e^-5	0.915	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3990320	2L_3990320_SNP [dm3] 2L_3990320_SNP [dm6]	T	C	3.310e^-5	0.915	INTRON fred	TF binding site mE1_TFBS_cad
3R	12590495	3R_12590495_SNP [dm3] 3R_16764773_SNP [dm6]	G	T	3.386e^-5	0.915	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17128600	2R_17128600_SNP [dm3] 2R_21241095_SNP [dm6]	C	A	3.422e^-5	0.915	INTRON ASPP
2L	7696651	2L_7696651_SNP [dm3] 2L_7696651_SNP [dm6]	T	G	3.475e^-5	0.915	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
3L	16726599	3L_16726599_SNP [dm3] 3L_16733499_SNP [dm6]	G	T	3.534e^-5	0.915	UPSTREAM CG9701 INTERGENIC
2R	19360697	2R_19360697_SNP [dm3] 2R_23473174_SNP [dm6]	C	T	3.571e^-5	0.915	NON_SYNONYMOUS_CODING Or59c INTRON CG43795
3L	10300712	3L_10300712_INS [dm3] 3L_10307612_INS [dm6]	A	AT	3.591e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5966532	X_5966532_SNP [dm3] X_6072499_SNP [dm6]	A	C	3.633e^-5	0.915	INTRON Tsp5D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17103016	2R_17103016_SNP [dm3] 2R_21215511_SNP [dm6]	A	G	3.804e^-5	0.915	UTR_3_PRIME CG15661 UPSTREAM CG4302
2R	19358676	2R_19358676_SNP [dm3] 2R_23471153_SNP [dm6]	G	A	3.915e^-5	0.915	SYNONYMOUS_CODING Or59b INTRON CG43795
3R	12591600	3R_12591600_SNP [dm3] 3R_16765878_SNP [dm6]	C	A	3.943e^-5	0.915	INTRON bxd EXON tre-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	9482558	X_9482558_DEL [dm3] X_9588525_DEL [dm6]	AA	A	3.964e^-5	0.915	UTR_3_PRIME Hex-A DOWNSTREAM Hex-A
3L	12786672	3L_12786672_SNP [dm3] 3L_12793572_SNP [dm6]	C	T	3.971e^-5	0.915	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3353803	3L_3353803_SNP [dm3] 3L_3353803_SNP [dm6]	T	G	3.989e^-5	0.915	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
X	2687769	X_2687769_SNP [dm3] X_2793736_SNP [dm6]	A	G	4.027e^-5	0.915	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	22242495	3L_22242495_SNP [dm3] 3L_22249395_SNP [dm6]	C	G	4.069e^-5	0.915	INTERGENIC
2R	15857364	2R_15857364_SNP [dm3] 2R_19969859_SNP [dm6]	G	C	4.078e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19359259	2R_19359259_SNP [dm3] 2R_23471736_SNP [dm6]	C	A	4.112e^-5	0.915	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
3R	16880906	3R_16880906_SNP [dm3] 3R_21055184_SNP [dm6]	G	A	4.120e^-5	0.915	INTRON Mvl
3L	20576359	3L_20576359_SNP [dm3] 3L_20583259_SNP [dm6]	A	G	4.124e^-5	0.915	INTERGENIC
3R	9621451	3R_9621451_INS [dm3] 3R_13795729_INS [dm6]	A	ATGTA	4.133e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11321536	3L_11321536_SNP [dm3] 3L_11328436_SNP [dm6]	T	A	4.140e^-5	0.915	INTERGENIC
3R	12590860	3R_12590860_SNP [dm3] 3R_16765138_SNP [dm6]	T	C	4.237e^-5	0.915	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19063571	2R_19063571_SNP [dm3] 2R_23176048_SNP [dm6]	A	G	4.313e^-5	0.915	INTRON CG34371
X	16809349	X_16809349_SNP [dm3] X_16915316_SNP [dm6]	C	T	4.435e^-5	0.915	INTRON CG4928
3L	10300719	3L_10300719_SNP [dm3] 3L_10307619_SNP [dm6]	A	G	4.501e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19359992	2R_19359992_SNP [dm3] 2R_23472469_SNP [dm6]	T	C	4.565e^-5	0.915	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	5493225	2L_5493225_SNP [dm3] 2L_5493225_SNP [dm6]	C	G	4.626e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
X	16809447	X_16809447_SNP [dm3] X_16915414_SNP [dm6]	T	A	4.692e^-5	0.915	INTRON CG4928
3L	22277137	3L_22277137_SNP [dm3] 3L_22284037_SNP [dm6]	A	T	4.725e^-5	0.915	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
3L	2161343	3L_2161343_SNP [dm3] 3L_2161343_SNP [dm6]	A	T	4.778e^-5	0.915	INTRON CG15822
X	8451643	X_8451643_SNP [dm3] X_8557610_SNP [dm6]	G	C	4.811e^-5	0.915	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8694639	X_8694639_SNP [dm3] X_8800606_SNP [dm6]	T	C	4.825e^-5	0.915	INTRON Lim1	TF binding site BDTNP1_TFBS_dl
2R	19359265	2R_19359265_SNP [dm3] 2R_23471742_SNP [dm6]	C	A	4.836e^-5	0.915	START_GAINED Or59b UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2L	7693859	2L_7693859_SNP [dm3] 2L_7693859_SNP [dm6]	C	T	5.010e^-5	0.915	UTR_3_PRIME Tep2 DOWNSTREAM CG43235
3L	5100673	3L_5100673_SNP [dm3] 3L_5100673_SNP [dm6]	G	A	5.031e^-5	0.915	UPSTREAM CR34047 INTERGENIC
3L	22253300	3L_22253300_SNP [dm3] 3L_22260200_SNP [dm6]	C	A	5.123e^-5	0.915	NON_SYNONYMOUS_CODING Rich
3L	20785927	3L_20785927_SNP [dm3] 3L_20792827_SNP [dm6]	C	T	5.176e^-5	0.915	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15811723	X_15811723_SNP [dm3] X_15917690_SNP [dm6]	A	T	5.256e^-5	0.915	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9172958	2R_9172958_SNP [dm3] 2R_13285453_SNP [dm6]	A	G	5.389e^-5	0.915	INTRON Dh31-R
3L	3353794	3L_3353794_SNP [dm3] 3L_3353794_SNP [dm6]	T	C	5.502e^-5	0.915	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	2110932	2L_2110932_SNP [dm3] 2L_2110932_SNP [dm6]	T	C	5.573e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17552923	2R_17552923_SNP [dm3] 2R_21665418_SNP [dm6]	T	C	5.656e^-5	0.915	NON_SYNONYMOUS_CODING CG42363 UTR_3_PRIME CG42362 UPSTREAM CG42364
2R	8918938	2R_8918938_SNP [dm3] 2R_13031433_SNP [dm6]	C	A	5.747e^-5	0.915	INTERGENIC
3R	15278676	3R_15278676_SNP [dm3] 3R_19452954_SNP [dm6]	C	T	5.787e^-5	0.915	INTRON CG31221
X	8451562	X_8451562_SNP [dm3] X_8557529_SNP [dm6]	T	C	5.818e^-5	0.915	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2846823	X_2846823_SNP [dm3] X_2952790_SNP [dm6]	T	A	5.845e^-5	0.915	UTR_3_PRIME rst INTRON kirre
X	8780277	X_8780277_SNP [dm3] X_8886244_SNP [dm6]	G	A	5.852e^-5	0.915	INTRON Moe
3R	823200	3R_823200_SNP [dm3] 3R_4997478_SNP [dm6]	T	A	5.909e^-5	0.915	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19359736	2R_19359736_INS [dm3] 2R_23472213_INS [dm6]	A	AAAGTTGA	5.933e^-5	0.915	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3L	12090591	3L_12090591_DEL [dm3] 3L_12097491_DEL [dm6]	ACTTACTTAATTTA...	A	5.960e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22157429	3L_22157429_SNP [dm3] 3L_22164329_SNP [dm6]	T	C	6.001e^-5	0.915	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22182115	3L_22182115_SNP [dm3] 3L_22189015_SNP [dm6]	G	A	6.001e^-5	0.915	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9853140	3L_9853140_SNP [dm3] 3L_9860040_SNP [dm6]	T	C	6.032e^-5	0.915	UPSTREAM CG10809 DOWNSTREAM iPLA2-VIA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1422043	2L_1422043_SNP [dm3] 2L_1422043_SNP [dm6]	A	G	6.032e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14552929	3L_14552929_SNP [dm3] 3L_14559829_SNP [dm6]	C	T	6.058e^-5	0.915	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7229392	2L_7229392_SNP [dm3] 2L_7229392_SNP [dm6]	G	A	6.157e^-5	0.915	SYNONYMOUS_CODING Ndae1 DOWNSTREAM CG43799	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22196644	3L_22196644_SNP [dm3] 3L_22203544_SNP [dm6]	G	A	6.161e^-5	0.915	INTRON olf413
X	8451631	X_8451631_SNP [dm3] X_8557598_SNP [dm6]	G	A	6.192e^-5	0.915	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18554341	2R_18554341_SNP [dm3] 2R_22666836_SNP [dm6]	A	G	6.232e^-5	0.915	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC
3R	25229006	3R_25229006_SNP [dm3] 3R_29403284_SNP [dm6]	T	C	6.311e^-5	0.915	INTRON Ptp99A
3L	823983	3L_823983_SNP [dm3] 3L_823983_SNP [dm6]	A	C	6.324e^-5	0.915	INTERGENIC
2R	7037876	2R_7037876_SNP [dm3] 2R_11150371_SNP [dm6]	T	C	6.427e^-5	0.915	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22270316	3L_22270316_SNP [dm3] 3L_22277216_SNP [dm6]	A	T	6.445e^-5	0.915	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
3L	15765306	3L_15765306_SNP [dm3] 3L_15772206_SNP [dm6]	A	G	6.462e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17278684	2R_17278684_SNP [dm3] 2R_21391179_SNP [dm6]	T	C	6.581e^-5	0.915	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22382701	3L_22382701_DEL [dm3] 3L_22389601_DEL [dm6]	AA	T	6.668e^-5	0.915	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3L	22391631	3L_22391631_SNP [dm3] 3L_22398531_SNP [dm6]	T	C	6.668e^-5	0.915	INTRON Ten-m	TF binding site BDTNP1_TFBS_da
3L	19133135	3L_19133135_SNP [dm3] 3L_19140035_SNP [dm6]	A	T	6.713e^-5	0.915	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2R	18911411	2R_18911411_SNP [dm3] 2R_23023888_SNP [dm6]	T	C	6.717e^-5	0.915	INTRON twi & 1 other
3L	22156754	3L_22156754_INS [dm3] 3L_22163654_INS [dm6]	G	GGGA	6.827e^-5	0.915	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10032473	2R_10032473_SNP [dm3] 2R_14144968_SNP [dm6]	G	A	6.880e^-5	0.915	DOWNSTREAM mir-989 INTERGENIC
3L	22193966	3L_22193966_SNP [dm3] 3L_22200866_SNP [dm6]	C	A	6.946e^-5	0.915	INTRON olf413
3L	22195276	3L_22195276_SNP [dm3] 3L_22202176_SNP [dm6]	C	G	6.962e^-5	0.915	INTRON olf413
3L	22156733	3L_22156733_DEL [dm3] 3L_22163633_DEL [dm6]	ACATTTTCTTTGGCCCACTC...	A	6.970e^-5	0.915	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22305066	3L_22305066_SNP [dm3] 3L_22311966_SNP [dm6]	A	G	6.970e^-5	0.915	INTRON Ten-m
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	7.009e^-5	0.915	INTRON fra
2L	6070628	2L_6070628_SNP [dm3] 2L_6070628_SNP [dm6]	A	T	7.045e^-5	0.915	UTR_5_PRIME CG9154 UPSTREAM Kr-h2 DOWNSTREAM CG13993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	19357066	3R_19357066_SNP [dm3] 3R_23531344_SNP [dm6]	C	T	7.073e^-5	0.915	UPSTREAM CG10175 INTERGENIC
2R	19372361	2R_19372361_SNP [dm3] 2R_23484838_SNP [dm6]	C	T	7.073e^-5	0.915	INTRON CG43795
2R	19357622	2R_19357622_SNP [dm3] 2R_23470099_SNP [dm6]	C	A	7.194e^-5	0.915	DOWNSTREAM Or59b INTRON CG43795
2R	6967097	2R_6967097_INS [dm3] 2R_11079592_INS [dm6]	T	TATTTTTT	7.255e^-5	0.915	INTRON luna
2R	19359284	2R_19359284_SNP [dm3] 2R_23471761_SNP [dm6]	T	C	7.283e^-5	0.915	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2R	6203153	2R_6203153_SNP [dm3] 2R_10315648_SNP [dm6]	T	C	7.351e^-5	0.915	INTRON Ndg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10032419	2R_10032419_SNP [dm3] 2R_14144914_SNP [dm6]	G	A	7.450e^-5	0.915	DOWNSTREAM mir-989 INTERGENIC
X	8452072	X_8452072_SNP [dm3] X_8558039_SNP [dm6]	T	C	7.486e^-5	0.915	SYNONYMOUS_CODING IntS4 DOWNSTREAM CG12112	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15191310	3R_15191310_SNP [dm3] 3R_19365588_SNP [dm6]	A	T	7.510e^-5	0.915	INTERGENIC
2R	19359537	2R_19359537_SNP [dm3] 2R_23472014_SNP [dm6]	T	A	7.525e^-5	0.915	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3L	22136525	3L_22136525_SNP [dm3] 3L_22143425_SNP [dm6]	G	T	7.557e^-5	0.915	INTRON olf413	TF binding site mE1_TFBS_HSA
X	5950025	X_5950025_SNP [dm3] X_6055992_SNP [dm6]	C	T	7.726e^-5	0.915	INTRON CG5921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6357634	2R_6357634_SNP [dm3] 2R_10470129_SNP [dm6]	G	C	7.768e^-5	0.915	SYNONYMOUS_CODING whd DOWNSTREAM CG11777	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18924341	3L_18924341_SNP [dm3] 3L_18931241_SNP [dm6]	T	A	7.853e^-5	0.915	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	1947150	2L_1947150_DEL [dm3] 2L_1947150_DEL [dm6]	CG	C	7.913e^-5	0.915	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3311861	2L_3311861_INS [dm3] 2L_3311861_INS [dm6]	C	CACTC	7.963e^-5	0.915	DOWNSTREAM CG15406 INTRON CG3277
3R	11855874	3R_11855874_INS [dm3] 3R_16030152_INS [dm6]	C	CTT	8.003e^-5	0.915	INTRON pnr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10032420	2R_10032420_INS [dm3] 2R_14144915_INS [dm6]	G	GAGT	8.062e^-5	0.915	DOWNSTREAM mir-989 INTERGENIC
X	19743529	X_19743529_SNP [dm3] X_19849496_SNP [dm6]	C	T	8.087e^-5	0.915	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2124854	2L_2124854_SNP [dm3] 2L_2124854_SNP [dm6]	C	T	8.095e^-5	0.915	INTERGENIC
3L	19117758	3L_19117758_SNP [dm3] 3L_19124658_SNP [dm6]	C	A	8.107e^-5	0.915	INTRON CG14082
3L	14682397	3L_14682397_SNP [dm3] 3L_14689297_SNP [dm6]	T	G	8.145e^-5	0.915	INTRON ome
3L	22159403	3L_22159403_SNP [dm3] 3L_22166303_SNP [dm6]	A	C	8.146e^-5	0.915	INTRON olf413
3R	24307048	3R_24307048_INS [dm3] 3R_28481326_INS [dm6]	T	TGAAGGTACGACAGCGT...	8.245e^-5	0.915	INTERGENIC
2L	7775191	2L_7775191_SNP [dm3] 2L_7775191_SNP [dm6]	C	T	8.258e^-5	0.915	DOWNSTREAM CG7179 & 1 other INTERGENIC
3R	20323548	3R_20323548_SNP [dm3] 3R_24497826_SNP [dm6]	G	A	8.358e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18448150	3R_18448150_SNP [dm3] 3R_22622428_SNP [dm6]	A	G	8.405e^-5	0.915	NON_SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10937239	3L_10937239_SNP [dm3] 3L_10944139_SNP [dm6]	C	T	8.408e^-5	0.915	UPSTREAM CG34050 INTERGENIC
3R	17441078	3R_17441078_SNP [dm3] 3R_21615356_SNP [dm6]	C	G	8.420e^-5	0.915	INTRON InR EXON CR44034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14553230	3L_14553230_SNP [dm3] 3L_14560130_SNP [dm6]	G	A	8.431e^-5	0.915	DOWNSTREAM Lk INTRON CR44843 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7693901	2L_7693901_SNP [dm3] 2L_7693901_SNP [dm6]	T	C	8.444e^-5	0.915	UTR_3_PRIME Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad
3R	12589112	3R_12589112_SNP [dm3] 3R_16763390_SNP [dm6]	A	G	8.456e^-5	0.915	DOWNSTREAM tre-2 INTRON bxd EXON tre-3	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2124857	2L_2124857_SNP [dm3] 2L_2124857_SNP [dm6]	C	A	8.469e^-5	0.915	INTERGENIC
3R	15127904	3R_15127904_DEL [dm3] 3R_19302182_DEL [dm6]	GC	G	8.495e^-5	0.915	DOWNSTREAM Dl INTERGENIC
3R	21902691	3R_21902691_SNP [dm3] 3R_26076969_SNP [dm6]	A	C	8.508e^-5	0.915	UTR_3_PRIME dys
3R	6575495	3R_6575495_SNP [dm3] 3R_10749773_SNP [dm6]	A	G	8.523e^-5	0.915	INTRON TkR86C
3L	22556655	3L_22556655_SNP [dm3] 3L_22563555_SNP [dm6]	C	T	8.675e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19359288	2R_19359288_SNP [dm3] 2R_23471765_SNP [dm6]	A	T	8.686e^-5	0.915	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2R	5099599	2R_5099599_SNP [dm3] 2R_9212094_SNP [dm6]	T	C	8.765e^-5	0.915	INTERGENIC
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	8.823e^-5	0.915	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15491172	2L_15491172_SNP [dm3] 2L_15491172_SNP [dm6]	T	C	8.942e^-5	0.915	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10937174	3L_10937174_SNP [dm3] 3L_10944074_SNP [dm6]	T	G	8.989e^-5	0.915	UPSTREAM CG34050 INTERGENIC
3L	22556737	3L_22556737_DEL [dm3] 3L_22563637_DEL [dm6]	CG	C	9.052e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10032414	2R_10032414_SNP [dm3] 2R_14144909_SNP [dm6]	G	T	9.080e^-5	0.915	DOWNSTREAM mir-989 INTERGENIC
3R	15032836	3R_15032836_SNP [dm3] 3R_19207114_SNP [dm6]	C	T	9.096e^-5	0.915	INTERGENIC
X	1393179	X_1393179_SNP [dm3] X_1499146_SNP [dm6]	C	A	9.129e^-5	0.915	INTRON inc & 1 other
3L	9900462	3L_9900462_SNP [dm3] 3L_9907362_SNP [dm6]	A	C	9.151e^-5	0.915	UPSTREAM CG34356 INTERGENIC
2R	18142914	2R_18142914_SNP [dm3] 2R_22255409_SNP [dm6]	G	A	9.166e^-5	0.915	INTRON dve	TF binding site mE1_TFBS_sens
2R	8557464	2R_8557464_SNP [dm3] 2R_12669959_SNP [dm6]	G	T	9.169e^-5	0.915	UTR_5_PRIME nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	11687585	2L_11687585_SNP [dm3] 2L_11687585_SNP [dm6]	T	C	9.192e^-5	0.915	INTERGENIC
2R	7929587	2R_7929587_SNP [dm3] 2R_12042082_SNP [dm6]	G	A	9.216e^-5	0.915	SYNONYMOUS_CODING RpIII128
3L	14552239	3L_14552239_SNP [dm3] 3L_14559139_SNP [dm6]	T	C	9.289e^-5	0.915	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
2R	8429759	2R_8429759_SNP [dm3] 2R_12542254_SNP [dm6]	G	A	9.311e^-5	0.915	INTRON fra
2R	19304311	2R_19304311_SNP [dm3] 2R_23416788_SNP [dm6]	C	A	9.329e^-5	0.915	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16758839	X_16758839_SNP [dm3] X_16864806_SNP [dm6]	A	T	9.347e^-5	0.915	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	7706247	2R_7706247_SNP [dm3] 2R_11818742_SNP [dm6]	T	G	9.370e^-5	0.915	INTERGENIC
3R	25706780	3R_25706780_DEL [dm3] 3R_29881058_DEL [dm6]	TCCATGCATTACACAAGTGC...	T	9.487e^-5	0.918	INTRON CG31038
2R	16433949	2R_16433949_SNP [dm3] 2R_20546444_SNP [dm6]	C	A	9.495e^-5	0.918	DOWNSTREAM CG30148 INTERGENIC
2L	2125066	2L_2125066_SNP [dm3] 2L_2125066_SNP [dm6]	A	G	9.631e^-5	0.926	INTERGENIC
3L	17414634	3L_17414634_SNP [dm3] 3L_17421534_SNP [dm6]	C	T	9.717e^-5	0.93	UPSTREAM blot DOWNSTREAM Sec3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18931042	2R_18931042_SNP [dm3] 2R_23043519_SNP [dm6]	C	T	9.867e^-5	0.939	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	4758238	3L_4758238_SNP [dm3] 3L_4758238_SNP [dm6]	A	T	1.003e^-4	0.945	SYNONYMOUS_CODING CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19057188	2R_19057188_SNP [dm3] 2R_23169665_SNP [dm6]	G	C	1.004e^-4	0.945	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22548822	3L_22548822_SNP [dm3] 3L_22555722_SNP [dm6]	G	A	1.016e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11321552	3L_11321552_SNP [dm3] 3L_11328452_SNP [dm6]	T	A	1.017e^-4	0.945	INTERGENIC
X	6263493	X_6263493_SNP [dm3] X_6369460_SNP [dm6]	T	C	1.020e^-4	0.945	SPLICE_SITE_REGION Marf INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5027949	2L_5027949_SNP [dm3] 2L_5027949_SNP [dm6]	G	A	1.023e^-4	0.945	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	15862345	X_15862345_SNP [dm3] X_15968312_SNP [dm6]	G	A	1.030e^-4	0.947	INTRON mmd
3R	12581868	3R_12581868_SNP [dm3] 3R_16756146_SNP [dm6]	G	A	1.045e^-4	0.949	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9831486	X_9831486_SNP [dm3] X_9937453_SNP [dm6]	G	A	1.046e^-4	0.949	INTERGENIC
3L	17626110	3L_17626110_SNP [dm3] 3L_17633010_SNP [dm6]	A	G	1.048e^-4	0.949	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2R	19302998	2R_19302998_SNP [dm3] 2R_23415475_SNP [dm6]	A	G	1.058e^-4	0.953	UPSTREAM CG30411 INTRON CG9812	TF binding site mE1_TFBS_Trl
3R	25253142	3R_25253142_SNP [dm3] 3R_29427420_SNP [dm6]	T	C	1.065e^-4	0.953	INTRON Ptp99A
2R	19358270	2R_19358270_SNP [dm3] 2R_23470747_SNP [dm6]	C	G	1.069e^-4	0.953	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	19328510	2R_19328510_SNP [dm3] 2R_23440987_SNP [dm6]	A	G	1.075e^-4	0.953	NON_SYNONYMOUS_CODING Or59a
X	2687793	X_2687793_SNP [dm3] X_2793760_SNP [dm6]	G	T	1.082e^-4	0.953	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	11321539	3L_11321539_SNP [dm3] 3L_11328439_SNP [dm6]	T	A	1.082e^-4	0.953	INTERGENIC
2L	20533009	2L_20533009_SNP [dm3] 2L_20533009_SNP [dm6]	T	A	1.088e^-4	0.954	INTERGENIC
2R	10032413	2R_10032413_SNP [dm3] 2R_14144908_SNP [dm6]	A	T	1.094e^-4	0.954	DOWNSTREAM mir-989 INTERGENIC
2R	9124588	2R_9124588_SNP [dm3] 2R_13237083_SNP [dm6]	T	G	1.100e^-4	0.955	DOWNSTREAM CG4679 & 1 other INTERGENIC
3R	12935581	3R_12935581_SNP [dm3] 3R_17109859_SNP [dm6]	C	A	1.108e^-4	0.956	INTRON cher
2R	6834873	2R_6834873_SNP [dm3] 2R_10947368_SNP [dm6]	T	G	1.112e^-4	0.956	DOWNSTREAM CR45228 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	15294311	3L_15294311_SNP [dm3] 3L_15301211_SNP [dm6]	T	G	1.127e^-4	0.96	NON_SYNONYMOUS_CODING Best3 DOWNSTREAM Best4
3R	8123783	3R_8123783_SNP [dm3] 3R_12298061_SNP [dm6]	A	G	1.130e^-4	0.96	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17241603	X_17241603_SNP [dm3] X_17347570_SNP [dm6]	G	C	1.131e^-4	0.96	INTERGENIC
3L	20856334	3L_20856334_SNP [dm3] 3L_20863234_SNP [dm6]	C	T	1.137e^-4	0.961	INTRON CG32432
3L	2170985	3L_2170985_SNP [dm3] 3L_2170985_SNP [dm6]	G	A	1.143e^-4	0.961	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
2L	7113014	2L_7113014_SNP [dm3] 2L_7113014_SNP [dm6]	A	G	1.159e^-4	0.964	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
X	12445807	X_12445807_DEL [dm3] X_12551774_DEL [dm6]	AGTGGAGAGTACAGCAATA...	A	1.161e^-4	0.964	INTRON CG43921
2L	6648788	2L_6648788_SNP [dm3] 2L_6648788_SNP [dm6]	G	A	1.161e^-4	0.964	START_GAINED CG31635 UTR_5_PRIME CG31635 UPSTREAM CG31635 & 1 other INTRON CG31635	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12150807	3L_12150807_SNP [dm3] 3L_12157707_SNP [dm6]	T	A	1.172e^-4	0.969	UTR_3_PRIME CG9760 DOWNSTREAM Nrx-IV	TF binding site mE1_TFBS_cad
3L	18129018	3L_18129018_DEL [dm3] 3L_18135918_DEL [dm6]	TT	T	1.186e^-4	0.971	EXON CR44669
3R	19420476	3R_19420476_SNP [dm3] 3R_23594754_SNP [dm6]	A	G	1.188e^-4	0.971	INTRON CG16723
3L	2157824	3L_2157824_SNP [dm3] 3L_2157824_SNP [dm6]	G	A	1.191e^-4	0.971	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11321613	3L_11321613_SNP [dm3] 3L_11328513_SNP [dm6]	T	A	1.229e^-4	0.992	INTERGENIC
3L	22558901	3L_22558901_SNP [dm3] 3L_22565801_SNP [dm6]	T	C	1.230e^-4	0.992	INTERGENIC
2R	17417648	2R_17417648_INS [dm3] 2R_21530143_INS [dm6]	T	TT	1.238e^-4	0.992	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25161098	3R_25161098_SNP [dm3] 3R_29335376_SNP [dm6]	A	T	1.238e^-4	0.992	INTERGENIC
2R	19359950	2R_19359950_SNP [dm3] 2R_23472427_SNP [dm6]	C	T	1.260e^-4	0.994	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	12524622	2L_12524622_SNP [dm3] 2L_12524622_SNP [dm6]	C	A	1.268e^-4	0.994	INTRON bun
2L	8772299	2L_8772299_SNP [dm3] 2L_8772299_SNP [dm6]	G	C	1.283e^-4	0.994	NON_SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
2R	4685619	2R_4685619_SNP [dm3] 2R_8798114_SNP [dm6]	C	G	1.284e^-4	0.994	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	6747563	3R_6747563_SNP [dm3] 3R_10921841_SNP [dm6]	T	C	1.284e^-4	0.994	INTERGENIC
2L	1426582	2L_1426582_SNP [dm3] 2L_1426582_SNP [dm6]	C	A	1.285e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
2R	5091916	2R_5091916_SNP [dm3] 2R_9204411_SNP [dm6]	G	A	1.291e^-4	0.994	UTR_3_PRIME CG8027
3R	12536351	3R_12536351_SNP [dm3] 3R_16710629_SNP [dm6]	G	A	1.294e^-4	0.994	INTRON Ubx
2R	19358553	2R_19358553_SNP [dm3] 2R_23471030_SNP [dm6]	C	T	1.294e^-4	0.994	SYNONYMOUS_CODING Or59b INTRON CG43795
3L	8363544	3L_8363544_SNP [dm3] 3L_8370444_SNP [dm6]	A	T	1.308e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12590482	3R_12590482_SNP [dm3] 3R_16764760_SNP [dm6]	T	C	1.309e^-4	0.994	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10300709	3L_10300709_SNP [dm3] 3L_10307609_SNP [dm6]	G	A	1.319e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22480645	3R_22480645_SNP [dm3] 3R_26654923_SNP [dm6]	C	G	1.338e^-4	0.994	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3L	14683817	3L_14683817_SNP [dm3] 3L_14690717_SNP [dm6]	C	T	1.360e^-4	0.994	UPSTREAM CG13477 INTRON ome
2R	4704438	2R_4704438_DEL [dm3] 2R_8816933_DEL [dm6]	TT	T	1.368e^-4	0.994	INTRON sns
3R	12589580	3R_12589580_SNP [dm3] 3R_16763858_SNP [dm6]	C	A	1.382e^-4	0.994	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22132359	3L_22132359_SNP [dm3] 3L_22139259_SNP [dm6]	C	T	1.383e^-4	0.994	INTRON olf413	TF binding site mE1_TFBS_inv
2L	15491147	2L_15491147_SNP [dm3] 2L_15491147_SNP [dm6]	A	G	1.383e^-4	0.994	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4535159	3L_4535159_DEL [dm3] 3L_4535159_DEL [dm6]	TGCGTGTATT	T	1.403e^-4	0.994	INTRON CG11353
3R	23276953	3R_23276953_SNP [dm3] 3R_27451231_SNP [dm6]	G	T	1.414e^-4	0.994	INTERGENIC
2R	18562644	2R_18562644_SNP [dm3] 2R_22675139_SNP [dm6]	A	G	1.418e^-4	0.994	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	24458454	3R_24458454_SNP [dm3] 3R_28632732_SNP [dm6]	T	C	1.424e^-4	0.994	INTRON CG10011	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	17207921	X_17207921_SNP [dm3] X_17313888_SNP [dm6]	T	A	1.424e^-4	0.994	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	17249985	X_17249985_SNP [dm3] X_17355952_SNP [dm6]	A	T	1.424e^-4	0.994	INTERGENIC
2L	5598063	2L_5598063_SNP [dm3] 2L_5598063_SNP [dm6]	G	A	1.426e^-4	0.994	SYNONYMOUS_CODING CG18266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14553314	3L_14553314_SNP [dm3] 3L_14560214_SNP [dm6]	G	A	1.429e^-4	0.994	UTR_3_PRIME Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12589755	3R_12589755_SNP [dm3] 3R_16764033_SNP [dm6]	A	G	1.435e^-4	0.994	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9474315	2R_9474315_SNP [dm3] 2R_13586810_SNP [dm6]	A	G	1.447e^-4	0.994	INTRON CG6191 & 1 other
2R	19359730	2R_19359730_SNP [dm3] 2R_23472207_SNP [dm6]	A	T	1.452e^-4	0.994	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	17188232	2R_17188232_INS [dm3] 2R_21300727_INS [dm6]	T	TTT	1.452e^-4	0.994	INTRON CG42672
2R	15326440	2R_15326440_SNP [dm3] 2R_19438935_SNP [dm6]	T	A	1.457e^-4	0.994	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2674924	3R_2674924_SNP [dm3] 3R_6849202_SNP [dm6]	G	T	1.458e^-4	0.994	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12581869	3R_12581869_SNP [dm3] 3R_16756147_SNP [dm6]	T	A	1.459e^-4	0.994	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21062694	3R_21062694_INS [dm3] 3R_25236972_INS [dm6]	T	TA	1.462e^-4	0.994	UPSTREAM CG11852 INTERGENIC
2R	6357631	2R_6357631_SNP [dm3] 2R_10470126_SNP [dm6]	A	G	1.464e^-4	0.994	SYNONYMOUS_CODING whd DOWNSTREAM CG11777	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9612385	2L_9612385_SNP [dm3] 2L_9612385_SNP [dm6]	C	T	1.499e^-4	0.994	SYNONYMOUS_CODING gcm2 UPSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
X	18929792	X_18929792_SNP [dm3] X_19035759_SNP [dm6]	T	A	1.500e^-4	0.994	INTERGENIC
2R	17985771	2R_17985771_SNP [dm3] 2R_22098266_SNP [dm6]	A	C	1.503e^-4	0.994	INTRON CG11073
2L	3754071	2L_3754071_SNP [dm3] 2L_3754071_SNP [dm6]	C	G	1.507e^-4	0.994	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
3R	19411524	3R_19411524_SNP [dm3] 3R_23585802_SNP [dm6]	G	A	1.508e^-4	0.994	INTERGENIC
X	17324201	X_17324201_SNP [dm3] X_17430168_SNP [dm6]	T	C	1.509e^-4	0.994	INTRON CG12994
2L	9518193	2L_9518193_SNP [dm3] 2L_9518193_SNP [dm6]	T	C	1.521e^-4	0.994	INTRON CG33298
3R	25457108	3R_25457108_SNP [dm3] 3R_29631386_SNP [dm6]	G	T	1.532e^-4	0.994	UTR_3_PRIME Dop1R2
3L	7380501	3L_7380501_SNP [dm3] 3L_7387401_SNP [dm6]	T	A	1.533e^-4	0.994	UPSTREAM CG8564 INTRON CG8564	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19359297	2R_19359297_SNP [dm3] 2R_23471774_SNP [dm6]	C	G	1.538e^-4	0.994	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2L	9567714	2L_9567714_SNP [dm3] 2L_9567714_SNP [dm6]	T	G	1.539e^-4	0.994	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2164362	3L_2164362_SNP [dm3] 3L_2164362_SNP [dm6]	A	C	1.549e^-4	0.994	UPSTREAM CG15822 INTERGENIC
X	4082670	X_4082670_SNP [dm3] X_4188637_SNP [dm6]	G	A	1.557e^-4	0.994	INTRON Fas2
2L	2896550	2L_2896550_SNP [dm3] 2L_2896550_SNP [dm6]	G	A	1.557e^-4	0.994	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12445833	X_12445833_SNP [dm3] X_12551800_SNP [dm6]	T	C	1.558e^-4	0.994	INTRON CG43921
3L	4811570	3L_4811570_SNP [dm3] 3L_4811570_SNP [dm6]	G	T	1.562e^-4	0.994	SYNONYMOUS_CODING Dhc64C
X	16809285	X_16809285_SNP [dm3] X_16915252_SNP [dm6]	T	C	1.562e^-4	0.994	INTRON CG4928
2L	2896572	2L_2896572_INS [dm3] 2L_2896572_INS [dm6]	A	AG	1.562e^-4	0.994	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	2846793	X_2846793_SNP [dm3] X_2952760_SNP [dm6]	A	T	1.567e^-4	0.994	UTR_3_PRIME rst INTRON kirre
2L	7770846	2L_7770846_SNP [dm3] 2L_7770846_SNP [dm6]	G	C	1.569e^-4	0.994	INTRON CG7191
2L	2896567	2L_2896567_SNP [dm3] 2L_2896567_SNP [dm6]	A	C	1.577e^-4	0.994	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18562709	2R_18562709_SNP [dm3] 2R_22675204_SNP [dm6]	C	T	1.579e^-4	0.994	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	9737951	3R_9737951_SNP [dm3] 3R_13912229_SNP [dm6]	A	G	1.581e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8772570	2L_8772570_SNP [dm3] 2L_8772570_SNP [dm6]	G	C	1.585e^-4	0.994	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2L	4770258	2L_4770258_INS [dm3] 2L_4770258_INS [dm6]	G	GGTT	1.587e^-4	0.994	INTRON CG15630
3L	22188358	3L_22188358_SNP [dm3] 3L_22195258_SNP [dm6]	C	A	1.588e^-4	0.994	INTRON olf413	TF binding site mE1_TFBS_HSA
X	18730312	X_18730312_SNP [dm3] X_18836279_SNP [dm6]	T	G	1.595e^-4	0.994	INTRON Pvf1
2R	5091110	2R_5091110_SNP [dm3] 2R_9203605_SNP [dm6]	A	G	1.598e^-4	0.994	DOWNSTREAM CG8027 INTERGENIC
3L	22531429	3L_22531429_SNP [dm3] 3L_22538329_SNP [dm6]	C	T	1.600e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18924343	3L_18924343_SNP [dm3] 3L_18931243_SNP [dm6]	C	A	1.605e^-4	0.994	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	7770820	2L_7770820_SNP [dm3] 2L_7770820_SNP [dm6]	C	A	1.626e^-4	0.994	INTRON CG7191
2R	19328040	2R_19328040_SNP [dm3] 2R_23440517_SNP [dm6]	G	A	1.628e^-4	0.994	SYNONYMOUS_CODING Or59a
2L	9613022	2L_9613022_SNP [dm3] 2L_9613022_SNP [dm6]	G	A	1.638e^-4	0.994	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15032888	3R_15032888_SNP [dm3] 3R_19207166_SNP [dm6]	A	T	1.640e^-4	0.994	INTERGENIC
2L	5549563	2L_5549563_SNP [dm3] 2L_5549563_SNP [dm6]	A	G	1.645e^-4	0.994	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other
3R	17042597	3R_17042597_SNP [dm3] 3R_21216875_SNP [dm6]	C	A	1.660e^-4	0.994	DOWNSTREAM CG5862 & 1 other EXON CR43975
2L	9611301	2L_9611301_SNP [dm3] 2L_9611301_SNP [dm6]	A	G	1.676e^-4	0.994	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9611386	2L_9611386_SNP [dm3] 2L_9611386_SNP [dm6]	T	C	1.676e^-4	0.994	INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7006364	2L_7006364_SNP [dm3] 2L_7006364_SNP [dm6]	G	A	1.678e^-4	0.994	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14553177	3L_14553177_SNP [dm3] 3L_14560077_SNP [dm6]	A	C	1.682e^-4	0.994	UTR_5_PRIME CG34039 DOWNSTREAM Lk EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	8611905	2L_8611905_SNP [dm3] 2L_8611905_SNP [dm6]	T	C	1.691e^-4	0.994	INTRON Sema-1a
3L	11321603	3L_11321603_SNP [dm3] 3L_11328503_SNP [dm6]	C	A	1.697e^-4	0.994	INTERGENIC
2L	5061509	2L_5061509_SNP [dm3] 2L_5061509_SNP [dm6]	C	T	1.709e^-4	0.994	UPSTREAM CR45291 INTRON qtc
2L	7693884	2L_7693884_SNP [dm3] 2L_7693884_SNP [dm6]	A	T	1.711e^-4	0.994	UTR_3_PRIME Tep2 DOWNSTREAM CG43235
2R	7703259	2R_7703259_SNP [dm3] 2R_11815754_SNP [dm6]	A	T	1.715e^-4	0.994	INTERGENIC
2R	16076147	2R_16076147_SNP [dm3] 2R_20188642_SNP [dm6]	G	T	1.715e^-4	0.994	INTERGENIC
2R	11639965	2R_11639965_SNP [dm3] 2R_15752460_SNP [dm6]	G	A	1.716e^-4	0.994	INTRON CG30089
3L	14711018	3L_14711018_SNP [dm3] 3L_14717918_SNP [dm6]	T	G	1.732e^-4	0.994	INTRON ome
3L	11321582	3L_11321582_SNP [dm3] 3L_11328482_SNP [dm6]	T	G	1.736e^-4	0.994	INTERGENIC
2L	17768315	2L_17768315_SNP [dm3] 2L_17768315_SNP [dm6]	G	A	1.738e^-4	0.994	INTRON CadN
3L	22544249	3L_22544249_SNP [dm3] 3L_22551149_SNP [dm6]	G	A	1.740e^-4	0.994	NON_SYNONYMOUS_CODING Trxr-2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12590950	3R_12590950_SNP [dm3] 3R_16765228_SNP [dm6]	G	A	1.750e^-4	0.994	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22440652	3L_22440652_SNP [dm3] 3L_22447552_SNP [dm6]	A	G	1.756e^-4	0.994	INTERGENIC
2R	8119549	2R_8119549_SNP [dm3] 2R_12232044_SNP [dm6]	G	T	1.759e^-4	0.994	INTERGENIC
3L	16099227	3L_16099227_SNP [dm3] 3L_16106127_SNP [dm6]	T	G	1.770e^-4	0.994	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
2R	6830040	2R_6830040_SNP [dm3] 2R_10942535_SNP [dm6]	A	T	1.777e^-4	0.994	UPSTREAM Spn47C INTERGENIC
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	1.780e^-4	0.994	INTERGENIC
3R	340798	3R_340798_SNP [dm3] 3R_4515076_SNP [dm6]	A	G	1.794e^-4	0.994	SYNONYMOUS_CODING CG34357 INTRON CG34357
2R	15798942	2R_15798942_SNP [dm3] 2R_19911437_SNP [dm6]	T	C	1.802e^-4	0.994	EXON CR44573
2R	17900460	2R_17900460_SNP [dm3] 2R_22012955_SNP [dm6]	T	C	1.802e^-4	0.994	INTRON CG34370
2R	19358952	2R_19358952_SNP [dm3] 2R_23471429_SNP [dm6]	G	C	1.803e^-4	0.994	SYNONYMOUS_CODING Or59b DOWNSTREAM Or59c INTRON CG43795
3R	24306994	3R_24306994_SNP [dm3] 3R_28481272_SNP [dm6]	A	G	1.806e^-4	0.994	INTERGENIC
2R	19124802	2R_19124802_SNP [dm3] 2R_23237279_SNP [dm6]	T	A	1.808e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8771844	2L_8771844_SNP [dm3] 2L_8771844_SNP [dm6]	T	C	1.809e^-4	0.994	SYNONYMOUS_CODING CG9465
2R	10349862	2R_10349862_SNP [dm3] 2R_14462357_SNP [dm6]	G	A	1.811e^-4	0.994	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5963421	3L_5963421_SNP [dm3] 3L_5970321_SNP [dm6]	A	G	1.811e^-4	0.994	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19039052	3L_19039052_SNP [dm3] 3L_19045952_SNP [dm6]	C	T	1.814e^-4	0.994	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18842560	3L_18842560_SNP [dm3] 3L_18849460_SNP [dm6]	G	T	1.815e^-4	0.994	INTERGENIC
2R	5099595	2R_5099595_SNP [dm3] 2R_9212090_SNP [dm6]	G	A	1.817e^-4	0.994	INTERGENIC
3R	17474352	3R_17474352_SNP [dm3] 3R_21648630_SNP [dm6]	T	A	1.818e^-4	0.994	INTRON E2f
3R	5450105	3R_5450105_SNP [dm3] 3R_9624383_SNP [dm6]	G	A	1.833e^-4	0.994	SYNONYMOUS_CODING CG8312 DOWNSTREAM CG9427	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	9287976	X_9287976_SNP [dm3] X_9393943_SNP [dm6]	C	T	1.835e^-4	0.994	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2172190	3L_2172190_SNP [dm3] 3L_2172190_SNP [dm6]	C	T	1.836e^-4	0.994	DOWNSTREAM CG15820 EXON CR15821
3L	22131021	3L_22131021_SNP [dm3] 3L_22137921_SNP [dm6]	C	T	1.868e^-4	0.994	INTRON olf413	TF binding site mE1_TFBS_Trl
3R	21903301	3R_21903301_SNP [dm3] 3R_26077579_SNP [dm6]	A	C	1.868e^-4	0.994	NON_SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
2L	9614289	2L_9614289_SNP [dm3] 2L_9614289_SNP [dm6]	C	A	1.873e^-4	0.994	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10436856	X_10436856_SNP [dm3] X_10542823_SNP [dm6]	G	T	1.893e^-4	0.994	INTRON spri
2L	16383408	2L_16383408_SNP [dm3] 2L_16383408_SNP [dm6]	C	A	1.893e^-4	0.994	INTERGENIC
2L	8772915	2L_8772915_DEL [dm3] 2L_8772915_DEL [dm6]	GACTT	A	1.899e^-4	0.994	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3L	15653817	3L_15653817_INS [dm3] 3L_15660717_INS [dm6]	A	ATA	1.904e^-4	0.994	UPSTREAM Eig71Ek DOWNSTREAM Eig71Ei INTRON Eig71Ej
3R	24306951	3R_24306951_SNP [dm3] 3R_28481229_SNP [dm6]	C	A	1.920e^-4	0.994	INTERGENIC
3R	24307009	3R_24307009_SNP [dm3] 3R_28481287_SNP [dm6]	A	T	1.924e^-4	0.994	INTERGENIC
3R	5503024	3R_5503024_SNP [dm3] 3R_9677302_SNP [dm6]	C	T	1.932e^-4	0.994	SYNONYMOUS_CODING CG8358 UPSTREAM CG16817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	1862552	3L_1862552_SNP [dm3] 3L_1862552_SNP [dm6]	T	C	1.933e^-4	0.994	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23866013	3R_23866013_SNP [dm3] 3R_28040291_SNP [dm6]	G	C	1.939e^-4	0.994	INTRON CG34362
2R	11436837	2R_11436837_SNP [dm3] 2R_15549332_SNP [dm6]	G	A	1.945e^-4	0.994	INTRON CG8192	TF binding site BDTNP1_TFBS_z
X	16708655	X_16708655_SNP [dm3] X_16814622_SNP [dm6]	A	T	1.951e^-4	0.994	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl
3R	24306947	3R_24306947_SNP [dm3] 3R_28481225_SNP [dm6]	C	T	1.959e^-4	0.994	INTERGENIC
2R	4744287	2R_4744287_SNP [dm3] 2R_8856782_SNP [dm6]	C	A	1.969e^-4	0.994	DOWNSTREAM sns INTERGENIC
3R	23270473	3R_23270473_SNP [dm3] 3R_27444751_SNP [dm6]	T	A	1.971e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7119378	2R_7119378_SNP [dm3] 2R_11231873_SNP [dm6]	C	A	1.975e^-4	0.994	INTRON metro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	11562686	2R_11562686_SNP [dm3] 2R_15675181_SNP [dm6]	A	T	1.981e^-4	0.994	INTRON fus	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	2683054	3R_2683054_SNP [dm3] 3R_6857332_SNP [dm6]	T	C	1.984e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4082700	X_4082700_SNP [dm3] X_4188667_SNP [dm6]	A	T	1.987e^-4	0.994	INTRON Fas2
3R	1252838	3R_1252838_SNP [dm3] 3R_5427116_SNP [dm6]	A	G	1.987e^-4	0.994	NON_SYNONYMOUS_CODING CG12147 INTRON CG14669	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16199875	2L_16199875_INS [dm3] 2L_16199875_INS [dm6]	GA	TCGGTTG	1.993e^-4	0.994	INTERGENIC
3L	18032372	3L_18032372_SNP [dm3] 3L_18039272_SNP [dm6]	C	T	2.007e^-4	0.994	INTRON Eip75B
X	16758767	X_16758767_SNP [dm3] X_16864734_SNP [dm6]	A	C	2.007e^-4	0.994	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	20061193	2R_20061193_SNP [dm3] 2R_24173670_SNP [dm6]	A	T	2.019e^-4	0.994	UTR_3_PRIME mRpS17 DOWNSTREAM CG3328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20062489	2R_20062489_SNP [dm3] 2R_24174966_SNP [dm6]	G	A	2.019e^-4	0.994	SPLICE_SITE_REGION Nop60B SYNONYMOUS_CODING Nop60B UPSTREAM mRpS17	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	20064455	2R_20064455_SNP [dm3] 2R_24176932_SNP [dm6]	G	A	2.019e^-4	0.994	NON_SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2R	20075801	2R_20075801_SNP [dm3] 2R_24188278_SNP [dm6]	C	T	2.019e^-4	0.994	UTR_5_PRIME ocm INTRON ocm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9608922	2L_9608922_SNP [dm3] 2L_9608922_SNP [dm6]	A	T	2.020e^-4	0.994	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19350385	2R_19350385_SNP [dm3] 2R_23462862_SNP [dm6]	G	T	2.026e^-4	0.994	INTRON CG43795	TF binding site mE1_TFBS_inv
2L	965476	2L_965476_SNP [dm3] 2L_965476_SNP [dm6]	C	G	2.028e^-4	0.994	INTERGENIC
2L	7317221	2L_7317221_SNP [dm3] 2L_7317221_SNP [dm6]	G	T	2.035e^-4	0.994	DOWNSTREAM wg INTERGENIC
3R	12546149	3R_12546149_MNP [dm3] 3R_16720427_MNP [dm6]	CCA	TGG	2.035e^-4	0.994	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18650358	3R_18650358_INS [dm3] 3R_22824636_INS [dm6]	C	CAGGATGC	2.042e^-4	0.994	EXON CR44350	TF binding site mE1_TFBS_inv
2L	4040630	2L_4040630_SNP [dm3] 2L_4040630_SNP [dm6]	T	A	2.054e^-4	0.994	INTRON ed
3R	22427988	3R_22427988_SNP [dm3] 3R_26602266_SNP [dm6]	A	G	2.055e^-4	0.994	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9064730	3L_9064730_SNP [dm3] 3L_9071630_SNP [dm6]	A	G	2.061e^-4	0.994	SYNONYMOUS_CODING CG4911
3L	10283350	3L_10283350_SNP [dm3] 3L_10290250_SNP [dm6]	G	A	2.081e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	2.103e^-4	0.994	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
3L	22557127	3L_22557127_SNP [dm3] 3L_22564027_SNP [dm6]	G	A	2.112e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19366777	2R_19366777_SNP [dm3] 2R_23479254_SNP [dm6]	G	T	2.115e^-4	0.994	INTRON CG43795
2R	8665944	2R_8665944_SNP [dm3] 2R_12778439_SNP [dm6]	G	A	2.120e^-4	0.994	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	19099583	3L_19099583_SNP [dm3] 3L_19106483_SNP [dm6]	A	G	2.134e^-4	0.994	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
2R	7707540	2R_7707540_SNP [dm3] 2R_11820035_SNP [dm6]	C	A	2.142e^-4	0.994	INTERGENIC
2L	3390431	2L_3390431_SNP [dm3] 2L_3390431_SNP [dm6]	C	G	2.144e^-4	0.994	DOWNSTREAM CR44791 INTERGENIC
2R	16499964	2R_16499964_INS [dm3] 2R_20612459_INS [dm6]	CCG	AATT	2.144e^-4	0.994	INTRON Hil
3R	3487943	3R_3487943_DEL [dm3] 3R_7662221_DEL [dm6]	CCTCGTGTTTTTC...	C	2.145e^-4	0.994	INTRON Nlg1
2R	19380647	2R_19380647_SNP [dm3] 2R_23493124_SNP [dm6]	A	T	2.147e^-4	0.994	INTERGENIC
3L	17626070	3L_17626070_SNP [dm3] 3L_17632970_SNP [dm6]	C	G	2.154e^-4	0.994	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
X	19115295	X_19115295_SNP [dm3] X_19221262_SNP [dm6]	C	A	2.158e^-4	0.994	INTRON CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	3243367	3R_3243367_SNP [dm3] 3R_7417645_SNP [dm6]	C	T	2.166e^-4	0.994	INTERGENIC
3L	4926696	3L_4926696_SNP [dm3] 3L_4926696_SNP [dm6]	G	C	2.170e^-4	0.994	INTERGENIC
3L	829921	3L_829921_SNP [dm3] 3L_829921_SNP [dm6]	G	A	2.174e^-4	0.994	UPSTREAM CR45184 DOWNSTREAM snoRNA:Me5.8S-G74 & 1 other INTRON CG13900 & 1 other EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15490947	2L_15490947_SNP [dm3] 2L_15490947_SNP [dm6]	G	T	2.187e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22546083	3L_22546083_SNP [dm3] 3L_22552983_SNP [dm6]	C	A	2.211e^-4	0.994	DOWNSTREAM Trxr-2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15293354	3L_15293354_SNP [dm3] 3L_15300254_SNP [dm6]	T	A	2.214e^-4	0.994	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
2L	9608604	2L_9608604_SNP [dm3] 2L_9608604_SNP [dm6]	T	A	2.222e^-4	0.994	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17681279	2R_17681279_SNP [dm3] 2R_21793774_SNP [dm6]	G	A	2.229e^-4	0.994	INTERGENIC
2R	17681294	2R_17681294_SNP [dm3] 2R_21793789_SNP [dm6]	G	C	2.229e^-4	0.994	INTERGENIC
3R	22420252	3R_22420252_SNP [dm3] 3R_26594530_SNP [dm6]	C	T	2.241e^-4	0.994	INTRON scrib
2L	15193660	2L_15193660_DEL [dm3] 2L_15193660_DEL [dm6]	ATGAT	A	2.242e^-4	0.994	INTRON CG4168
2L	6903710	2L_6903710_SNP [dm3] 2L_6903710_SNP [dm6]	C	A	2.245e^-4	0.994	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad
3L	17414633	3L_17414633_SNP [dm3] 3L_17421533_SNP [dm6]	C	A	2.246e^-4	0.994	UPSTREAM blot DOWNSTREAM Sec3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26846304	3R_26846304_SNP [dm3] 3R_31020582_SNP [dm6]	A	C	2.247e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	2.252e^-4	0.994	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
3L	11037690	3L_11037690_SNP [dm3] 3L_11044590_SNP [dm6]	C	T	2.260e^-4	0.994	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	12761582	2R_12761582_SNP [dm3] 2R_16874077_SNP [dm6]	C	T	2.276e^-4	0.994	DOWNSTREAM CG8910 & 1 other INTRON CG6435
3L	17474333	3L_17474333_SNP [dm3] 3L_17481233_SNP [dm6]	G	T	2.280e^-4	0.994	START_GAINED CG6333 UTR_5_PRIME CG6333 INTRON CG6333
2R	17489501	2R_17489501_SNP [dm3] 2R_21601996_SNP [dm6]	T	C	2.284e^-4	0.994	INTERGENIC
2L	7693847	2L_7693847_SNP [dm3] 2L_7693847_SNP [dm6]	T	C	2.286e^-4	0.994	UTR_3_PRIME Tep2 DOWNSTREAM CG43235
2R	7446937	2R_7446937_SNP [dm3] 2R_11559432_SNP [dm6]	G	C	2.286e^-4	0.994	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12589327	3R_12589327_SNP [dm3] 3R_16763605_SNP [dm6]	T	C	2.300e^-4	0.994	DOWNSTREAM tre-2 INTRON bxd EXON tre-3	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15265060	2L_15265060_DEL [dm3] 2L_15265060_DEL [dm6]	AA	A	2.301e^-4	0.994	UPSTREAM yuri DOWNSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	10116823	3R_10116823_INS [dm3] 3R_14291101_INS [dm6]	T	TGTTCTTACAATTT...	2.302e^-4	0.994	INTRON CG12207
2R	14797447	2R_14797447_SNP [dm3] 2R_18909942_SNP [dm6]	G	T	2.313e^-4	0.994	SYNONYMOUS_CODING Vha100-3 INTRON sano	TF binding site mE1_TFBS_sens
3R	12935636	3R_12935636_SNP [dm3] 3R_17109914_SNP [dm6]	G	A	2.315e^-4	0.994	INTRON cher
3L	18695688	3L_18695688_SNP [dm3] 3L_18702588_SNP [dm6]	A	T	2.317e^-4	0.994	INTERGENIC
2L	3814421	2L_3814421_DEL [dm3] 2L_3814421_DEL [dm6]	TT	T	2.344e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14379597	2L_14379597_SNP [dm3] 2L_14379597_SNP [dm6]	T	A	2.350e^-4	0.994	INTRON ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8858375	2L_8858375_SNP [dm3] 2L_8858375_SNP [dm6]	G	C	2.355e^-4	0.994	INTERGENIC
3R	22480614	3R_22480614_SNP [dm3] 3R_26654892_SNP [dm6]	T	A	2.359e^-4	0.994	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2R	8119474	2R_8119474_SNP [dm3] 2R_12231969_SNP [dm6]	G	C	2.361e^-4	0.994	INTERGENIC
X	5027960	X_5027960_SNP [dm3] X_5133927_SNP [dm6]	A	T	2.378e^-4	0.994	DOWNSTREAM Rpn13R INTRON rg & 1 other
2R	19201544	2R_19201544_SNP [dm3] 2R_23314021_SNP [dm6]	G	A	2.381e^-4	0.994	UPSTREAM HP1Lcsd INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10954120	3R_10954120_SNP [dm3] 3R_15128398_SNP [dm6]	G	A	2.401e^-4	0.994	INTRON CG42788
2L	2896585	2L_2896585_INS [dm3] 2L_2896585_INS [dm6]	C	TT	2.411e^-4	0.994	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12547813	3R_12547813_SNP [dm3] 3R_16722091_SNP [dm6]	C	T	2.417e^-4	0.994	INTRON Ubx	TF binding site BDTNP1_TFBS_da
3R	15191216	3R_15191216_SNP [dm3] 3R_19365494_SNP [dm6]	C	T	2.417e^-4	0.994	INTERGENIC
2L	7770853	2L_7770853_MNP [dm3] 2L_7770853_MNP [dm6]	ACA	GAG	2.428e^-4	0.994	INTRON CG7191
3L	656552	3L_656552_SNP [dm3] 3L_656552_SNP [dm6]	A	G	2.436e^-4	0.994	NON_SYNONYMOUS_CODING Rev1
3L	16099223	3L_16099223_SNP [dm3] 3L_16106123_SNP [dm6]	T	A	2.442e^-4	0.994	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
3L	2157920	3L_2157920_SNP [dm3] 3L_2157920_SNP [dm6]	A	C	2.443e^-4	0.994	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18554385	2R_18554385_SNP [dm3] 2R_22666880_SNP [dm6]	C	A	2.443e^-4	0.994	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	11415358	2R_11415358_INS [dm3] 2R_15527853_INS [dm6]	A	AA	2.447e^-4	0.994	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19333863	2R_19333863_SNP [dm3] 2R_23446340_SNP [dm6]	C	T	2.456e^-4	0.994	INTRON CG43795
2R	8121488	2R_8121488_SNP [dm3] 2R_12233983_SNP [dm6]	T	A	2.467e^-4	0.994	DOWNSTREAM CR44313 INTERGENIC
2R	19305287	2R_19305287_SNP [dm3] 2R_23417764_SNP [dm6]	C	T	2.473e^-4	0.994	DOWNSTREAM CG30411 INTRON CG9812
2R	19356863	2R_19356863_DEL [dm3] 2R_23469340_DEL [dm6]	ATGATGTTTCA...	A	2.474e^-4	0.994	DOWNSTREAM Or59b INTRON CG43795
3R	18441533	3R_18441533_SNP [dm3] 3R_22615811_SNP [dm6]	G	A	2.483e^-4	0.994	SYNONYMOUS_CODING EF-G2 UTR_3_PRIME EF-G2 UPSTREAM CG31161
2L	17657957	2L_17657957_SNP [dm3] 2L_17657957_SNP [dm6]	C	T	2.490e^-4	0.994	SYNONYMOUS_CODING CadN
2R	18016151	2R_18016151_SNP [dm3] 2R_22128646_SNP [dm6]	G	A	2.494e^-4	0.994	INTRON NtR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	4691722	2R_4691722_SNP [dm3] 2R_8804217_SNP [dm6]	C	T	2.495e^-4	0.994	INTRON sns
2L	3292234	2L_3292234_SNP [dm3] 2L_3292234_SNP [dm6]	A	G	2.502e^-4	0.994	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15191327	3R_15191327_SNP [dm3] 3R_19365605_SNP [dm6]	G	A	2.505e^-4	0.994	INTERGENIC
3R	9771669	3R_9771669_SNP [dm3] 3R_13945947_SNP [dm6]	G	A	2.507e^-4	0.994	UPSTREAM Art6 INTERGENIC
3L	18695687	3L_18695687_SNP [dm3] 3L_18702587_SNP [dm6]	C	G	2.510e^-4	0.994	INTERGENIC
3L	13583799	3L_13583799_SNP [dm3] 3L_13590699_SNP [dm6]	G	C	2.510e^-4	0.994	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
2L	9614121	2L_9614121_SNP [dm3] 2L_9614121_SNP [dm6]	A	T	2.511e^-4	0.994	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	11321619	3L_11321619_SNP [dm3] 3L_11328519_SNP [dm6]	T	G	2.514e^-4	0.994	INTERGENIC
X	9831508	X_9831508_SNP [dm3] X_9937475_SNP [dm6]	T	C	2.540e^-4	0.994	INTERGENIC
3L	15293460	3L_15293460_SNP [dm3] 3L_15300360_SNP [dm6]	A	T	2.543e^-4	0.994	DOWNSTREAM Best3 INTRON Best4
3L	7423971	3L_7423971_SNP [dm3] 3L_7430871_SNP [dm6]	A	G	2.543e^-4	0.994	INTRON CG42458
2R	17188497	2R_17188497_SNP [dm3] 2R_21300992_SNP [dm6]	C	T	2.551e^-4	0.994	UPSTREAM CG42672 INTRON CG42672
2L	17619240	2L_17619240_SNP [dm3] 2L_17619240_SNP [dm6]	G	A	2.551e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_inv
X	1559778	X_1559778_SNP [dm3] X_1665745_SNP [dm6]	T	C	2.558e^-4	0.994	SYNONYMOUS_CODING dor DOWNSTREAM br INTRON Mur2B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25244494	3R_25244494_SNP [dm3] 3R_29418772_SNP [dm6]	C	T	2.558e^-4	0.994	INTRON Ptp99A
2R	14187906	2R_14187906_SNP [dm3] 2R_18300401_SNP [dm6]	C	A	2.559e^-4	0.994	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17414386	3L_17414386_SNP [dm3] 3L_17421286_SNP [dm6]	A	T	2.566e^-4	0.994	DOWNSTREAM Sec3 INTRON blot	TF binding site mE1_TFBS_Trl
3L	18143401	3L_18143401_SNP [dm3] 3L_18150301_SNP [dm6]	T	A	2.574e^-4	0.994	INTRON CG7330
2L	20532939	2L_20532939_INS [dm3] 2L_20532939_INS [dm6]	T	TT	2.591e^-4	0.994	INTERGENIC
X	17431499	X_17431499_SNP [dm3] X_17537466_SNP [dm6]	T	C	2.602e^-4	0.994	INTRON CG43658
2L	17658389	2L_17658389_SNP [dm3] 2L_17658389_SNP [dm6]	T	C	2.602e^-4	0.994	SYNONYMOUS_CODING CadN
3L	14680736	3L_14680736_SNP [dm3] 3L_14687636_SNP [dm6]	T	C	2.607e^-4	0.994	INTRON ome
3R	19420887	3R_19420887_SNP [dm3] 3R_23595165_SNP [dm6]	C	G	2.614e^-4	0.994	NON_SYNONYMOUS_CODING CG16723
2R	19304296	2R_19304296_SNP [dm3] 2R_23416773_SNP [dm6]	C	T	2.621e^-4	0.994	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21891770	3R_21891770_DEL [dm3] 3R_26066048_DEL [dm6]	CG	C	2.626e^-4	0.994	INTERGENIC
2R	19377218	2R_19377218_SNP [dm3] 2R_23489695_SNP [dm6]	C	T	2.635e^-4	0.994	INTRON CG43795
2R	16076927	2R_16076927_SNP [dm3] 2R_20189422_SNP [dm6]	T	G	2.637e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17758604	2R_17758604_SNP [dm3] 2R_21871099_SNP [dm6]	G	T	2.647e^-4	0.994	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	2.660e^-4	0.994	INTRON fas
2R	19386806	2R_19386806_SNP [dm3] 2R_23499283_SNP [dm6]	C	A	2.662e^-4	0.994	UPSTREAM CG13558 INTERGENIC
3L	2172366	3L_2172366_SNP [dm3] 3L_2172366_SNP [dm6]	C	A	2.665e^-4	0.994	DOWNSTREAM CG15820 EXON CR15821
2R	17103048	2R_17103048_SNP [dm3] 2R_21215543_SNP [dm6]	T	C	2.670e^-4	0.994	SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
3R	8398746	3R_8398746_INS [dm3] 3R_12573024_INS [dm6]	A	ATTGAG	2.680e^-4	0.994	INTRON Octbeta2R
2L	2699663	2L_2699663_SNP [dm3] 2L_2699663_SNP [dm6]	T	C	2.688e^-4	0.994	INTRON CG31690
3L	12151490	3L_12151490_SNP [dm3] 3L_12158390_SNP [dm6]	T	A	2.702e^-4	0.994	INTRON CG9760	TF binding site mE1_TFBS_cad
3R	21347145	3R_21347145_SNP [dm3] 3R_25521423_SNP [dm6]	A	C	2.709e^-4	0.994	INTRON msi
3L	10745430	3L_10745430_INS [dm3] 3L_10752330_INS [dm6]	C	CC	2.710e^-4	0.994	INTERGENIC
2L	17664779	2L_17664779_SNP [dm3] 2L_17664779_SNP [dm6]	C	A	2.714e^-4	0.994	INTRON CadN
3R	11689433	3R_11689433_SNP [dm3] 3R_15863711_SNP [dm6]	T	A	2.718e^-4	0.994	INTRON CG31183
3R	12180328	3R_12180328_SNP [dm3] 3R_16354606_SNP [dm6]	A	C	2.725e^-4	0.994	INTRON CG10311
3R	12538578	3R_12538578_SNP [dm3] 3R_16712856_SNP [dm6]	T	A	2.729e^-4	0.994	INTRON Ubx
2L	8923030	2L_8923030_SNP [dm3] 2L_8923030_SNP [dm6]	C	T	2.733e^-4	0.994	SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7266223	2R_7266223_SNP [dm3] 2R_11378718_SNP [dm6]	G	A	2.735e^-4	0.994	INTRON Tsp47F
2L	11826922	2L_11826922_INS [dm3] 2L_11826922_INS [dm6]	A	AAG	2.738e^-4	0.994	DOWNSTREAM esc INTRON Pde1c
2R	7712779	2R_7712779_SNP [dm3] 2R_11825274_SNP [dm6]	C	T	2.762e^-4	0.994	UPSTREAM CG13192 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	5097367	2R_5097367_SNP [dm3] 2R_9209862_SNP [dm6]	T	C	2.766e^-4	0.994	DOWNSTREAM VhaAC45 INTERGENIC
2L	8771957	2L_8771957_SNP [dm3] 2L_8771957_SNP [dm6]	A	T	2.770e^-4	0.994	NON_SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
3L	19133134	3L_19133134_SNP [dm3] 3L_19140034_SNP [dm6]	A	T	2.772e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2L	20563894	2L_20563894_SNP [dm3] 2L_20563894_SNP [dm6]	A	T	2.789e^-4	0.994	INTRON CR45347
3L	4177340	3L_4177340_SNP [dm3] 3L_4177340_SNP [dm6]	G	T	2.790e^-4	0.994	SYNONYMOUS_CODING Teh4 INTRON CG18675
2R	8120408	2R_8120408_SNP [dm3] 2R_12232903_SNP [dm6]	A	G	2.795e^-4	0.994	INTERGENIC
3L	3815384	3L_3815384_SNP [dm3] 3L_3815384_SNP [dm6]	T	A	2.797e^-4	0.994	UPSTREAM CR43932 DOWNSTREAM CR45034 & 1 other INTRON Scsalpha
3R	25134587	3R_25134587_SNP [dm3] 3R_29308865_SNP [dm6]	G	T	2.803e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	8392633	2L_8392633_SNP [dm3] 2L_8392633_SNP [dm6]	G	A	2.806e^-4	0.994	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	17437024	3L_17437024_SNP [dm3] 3L_17443924_SNP [dm6]	A	G	2.822e^-4	0.994	INTRON CG18265	TF binding site BDTNP1_TFBS_twi
3R	3719525	3R_3719525_SNP [dm3] 3R_7893803_SNP [dm6]	T	G	2.822e^-4	0.994	INTRON mRpS9 & 1 other
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	2.825e^-4	0.994	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17474252	3L_17474252_SNP [dm3] 3L_17481152_SNP [dm6]	A	T	2.840e^-4	0.994	UTR_5_PRIME CG6333 INTRON CG6333
2R	19366637	2R_19366637_SNP [dm3] 2R_23479114_SNP [dm6]	G	A	2.842e^-4	0.994	INTRON CG43795
X	8782794	X_8782794_SNP [dm3] X_8888761_SNP [dm6]	C	T	2.843e^-4	0.994	INTRON Moe
2R	17190466	2R_17190466_SNP [dm3] 2R_21302961_SNP [dm6]	A	G	2.849e^-4	0.994	INTRON CG42672
2R	18397643	2R_18397643_SNP [dm3] 2R_22510138_SNP [dm6]	C	G	2.855e^-4	0.994	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	622342	2L_622342_SNP [dm3] 2L_622342_SNP [dm6]	A	G	2.863e^-4	0.994	UPSTREAM CR44797 INTERGENIC
2R	19365954	2R_19365954_SNP [dm3] 2R_23478431_SNP [dm6]	C	T	2.867e^-4	0.994	UPSTREAM CR43793 INTRON CG43795
3R	21891765	3R_21891765_SNP [dm3] 3R_26066043_SNP [dm6]	G	A	2.872e^-4	0.994	INTERGENIC
2R	19359600	2R_19359600_SNP [dm3] 2R_23472077_SNP [dm6]	A	C	2.886e^-4	0.994	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2L	9611148	2L_9611148_SNP [dm3] 2L_9611148_SNP [dm6]	T	C	2.888e^-4	0.994	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22473434	3L_22473434_SNP [dm3] 3L_22480334_SNP [dm6]	C	A	2.892e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19302735	2R_19302735_SNP [dm3] 2R_23415212_SNP [dm6]	G	A	2.898e^-4	0.994	UPSTREAM CG30411 INTRON CG9812
2R	19303298	2R_19303298_SNP [dm3] 2R_23415775_SNP [dm6]	G	T	2.898e^-4	0.994	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	19133359	3L_19133359_SNP [dm3] 3L_19140259_SNP [dm6]	G	T	2.906e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk
3L	15792582	3L_15792582_SNP [dm3] 3L_15799482_SNP [dm6]	T	C	2.912e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	853667	3L_853667_SNP [dm3] 3L_853667_SNP [dm6]	C	T	2.912e^-4	0.994	SPLICE_SITE_REGION dpr20 DOWNSTREAM CG13890 INTRON dpr20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13987314	2L_13987314_SNP [dm3] 2L_13987314_SNP [dm6]	T	C	2.920e^-4	0.994	INTRON rk
2L	9616329	2L_9616329_SNP [dm3] 2L_9616329_SNP [dm6]	C	T	2.922e^-4	0.994	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
2R	3554713	2R_3554713_SNP [dm3] 2R_7667208_SNP [dm6]	A	C	2.933e^-4	0.994	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
2L	7693895	2L_7693895_SNP [dm3] 2L_7693895_SNP [dm6]	T	C	2.933e^-4	0.994	UTR_3_PRIME Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad
X	18912977	X_18912977_SNP [dm3] X_19018944_SNP [dm6]	T	A	2.934e^-4	0.994	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11415377	2R_11415377_SNP [dm3] 2R_15527872_SNP [dm6]	G	C	2.951e^-4	0.994	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24307073	3R_24307073_SNP [dm3] 3R_28481351_SNP [dm6]	G	A	2.951e^-4	0.994	INTERGENIC
2R	17180907	2R_17180907_SNP [dm3] 2R_21293402_SNP [dm6]	A	G	2.952e^-4	0.994	UTR_5_PRIME Sgf29 UPSTREAM RpL29 DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
X	14643794	X_14643794_SNP [dm3] X_14749761_SNP [dm6]	G	A	2.962e^-4	0.994	UPSTREAM NetB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10600706	2R_10600706_SNP [dm3] 2R_14713201_SNP [dm6]	G	A	2.962e^-4	0.994	NON_SYNONYMOUS_CODING mspo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14535048	3L_14535048_SNP [dm3] 3L_14541948_SNP [dm6]	T	C	2.964e^-4	0.994	UTR_3_PRIME CG9238
2L	17654695	2L_17654695_SNP [dm3] 2L_17654695_SNP [dm6]	T	G	2.970e^-4	0.994	INTRON CadN
3L	15653828	3L_15653828_DEL [dm3] 3L_15660728_DEL [dm6]	ACTA	A	2.972e^-4	0.994	UPSTREAM Eig71Ek DOWNSTREAM Eig71Ei INTRON Eig71Ej
2R	17175468	2R_17175468_SNP [dm3] 2R_21287963_SNP [dm6]	G	A	2.973e^-4	0.994	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26082876	3R_26082876_SNP [dm3] 3R_30257154_SNP [dm6]	T	C	2.976e^-4	0.994	INTERGENIC
X	4082760	X_4082760_SNP [dm3] X_4188727_SNP [dm6]	A	T	2.977e^-4	0.994	INTRON Fas2
2L	4040466	2L_4040466_SNP [dm3] 2L_4040466_SNP [dm6]	T	G	2.982e^-4	0.994	INTRON ed
2L	20138004	2L_20138004_SNP [dm3] 2L_20138004_SNP [dm6]	T	C	2.985e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15960875	2R_15960875_SNP [dm3] 2R_20073370_SNP [dm6]	C	G	2.996e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19562166	3R_19562166_SNP [dm3] 3R_23736444_SNP [dm6]	G	A	2.998e^-4	0.994	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	19420940	3R_19420940_SNP [dm3] 3R_23595218_SNP [dm6]	T	A	3.001e^-4	0.994	INTRON CG16723
2R	20075702	2R_20075702_SNP [dm3] 2R_24188179_SNP [dm6]	C	G	3.023e^-4	0.994	UPSTREAM ocm INTRON ocm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24458225	3R_24458225_SNP [dm3] 3R_28632503_SNP [dm6]	T	A	3.023e^-4	0.994	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	2789759	X_2789759_SNP [dm3] X_2895726_SNP [dm6]	C	G	3.029e^-4	0.994	INTRON kirre
2L	6539375	2L_6539375_SNP [dm3] 2L_6539375_SNP [dm6]	C	T	3.030e^-4	0.994	INTRON eya
3R	12539704	3R_12539704_SNP [dm3] 3R_16713982_SNP [dm6]	G	A	3.030e^-4	0.994	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14682422	3L_14682422_SNP [dm3] 3L_14689322_SNP [dm6]	A	C	3.042e^-4	0.994	INTRON ome
2R	18411784	2R_18411784_SNP [dm3] 2R_22524279_SNP [dm6]	G	A	3.044e^-4	0.994	INTRON px
2R	18560897	2R_18560897_SNP [dm3] 2R_22673392_SNP [dm6]	C	T	3.045e^-4	0.994	DOWNSTREAM RYBP EXON CR44761	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	19420508	3R_19420508_SNP [dm3] 3R_23594786_SNP [dm6]	C	T	3.049e^-4	0.994	SPLICE_SITE_REGION CG16723 INTRON CG16723
3L	10937093	3L_10937093_INS [dm3] 3L_10943993_INS [dm6]	A	AG	3.054e^-4	0.994	UPSTREAM CG34050 INTERGENIC
3L	19133419	3L_19133419_SNP [dm3] 3L_19140319_SNP [dm6]	G	T	3.059e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk
3R	13876493	3R_13876493_SNP [dm3] 3R_18050771_SNP [dm6]	C	G	3.060e^-4	0.994	INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25315809	3R_25315809_SNP [dm3] 3R_29490087_SNP [dm6]	A	G	3.066e^-4	0.994	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17620938	2L_17620938_SNP [dm3] 2L_17620938_SNP [dm6]	G	A	3.069e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10908005	3R_10908005_SNP [dm3] 3R_15082283_SNP [dm6]	C	A	3.078e^-4	0.994	INTRON CG6966	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1140144	3R_1140144_SNP [dm3] 3R_5314422_SNP [dm6]	T	C	3.079e^-4	0.994	INTRON mtd
2R	6400910	2R_6400910_SNP [dm3] 2R_10513405_SNP [dm6]	G	T	3.082e^-4	0.994	INTRON lola
2R	17128616	2R_17128616_SNP [dm3] 2R_21241111_SNP [dm6]	A	T	3.086e^-4	0.994	INTRON ASPP
2R	11467371	2R_11467371_SNP [dm3] 2R_15579866_SNP [dm6]	G	A	3.089e^-4	0.994	INTERGENIC
3L	12090620	3L_12090620_SNP [dm3] 3L_12097520_SNP [dm6]	T	C	3.089e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16394746	2L_16394746_SNP [dm3] 2L_16394746_SNP [dm6]	A	G	3.091e^-4	0.994	INTERGENIC
3R	22480585	3R_22480585_SNP [dm3] 3R_26654863_SNP [dm6]	G	T	3.093e^-4	0.994	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3R	7861320	3R_7861320_SNP [dm3] 3R_12035598_SNP [dm6]	G	A	3.096e^-4	0.994	DOWNSTREAM ssp5 INTERGENIC
3R	25331373	3R_25331373_DEL [dm3] 3R_29505651_DEL [dm6]	TGG	C	3.101e^-4	0.994	INTERGENIC
2R	12269378	2R_12269378_SNP [dm3] 2R_16381873_SNP [dm6]	A	T	3.117e^-4	0.994	UTR_3_PRIME CG43187
X	14303527	X_14303527_SNP [dm3] X_14409494_SNP [dm6]	C	T	3.123e^-4	0.994	INTRON dpr8
2L	2636688	2L_2636688_DEL [dm3] 2L_2636688_DEL [dm6]	ATACTCTACATA...	A	3.129e^-4	0.994	INTERGENIC
3R	23487313	3R_23487313_SNP [dm3] 3R_27661591_SNP [dm6]	T	C	3.147e^-4	0.994	UPSTREAM unc80 INTERGENIC
3R	17777596	3R_17777596_SNP [dm3] 3R_21951874_SNP [dm6]	C	T	3.159e^-4	0.994	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	26638156	3R_26638156_SNP [dm3] 3R_30812434_SNP [dm6]	A	C	3.164e^-4	0.994	INTRON cindr	TF binding site mE1_TFBS_HSA
3L	8363723	3L_8363723_SNP [dm3] 3L_8370623_SNP [dm6]	C	T	3.169e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19303212	2R_19303212_SNP [dm3] 2R_23415689_SNP [dm6]	T	A	3.171e^-4	0.994	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	2190774	2L_2190774_SNP [dm3] 2L_2190774_SNP [dm6]	A	C	3.178e^-4	0.994	SYNONYMOUS_CODING CG10874 EXON CR44065	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18699231	2R_18699231_SNP [dm3] 2R_22811726_SNP [dm6]	T	C	3.196e^-4	0.994	INTRON stl
2L	17620930	2L_17620930_SNP [dm3] 2L_17620930_SNP [dm6]	G	T	3.198e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10954840	3R_10954840_SNP [dm3] 3R_15129118_SNP [dm6]	G	T	3.203e^-4	0.994	INTRON CG42788
X	16131963	X_16131963_SNP [dm3] X_16237930_SNP [dm6]	A	T	3.206e^-4	0.994	INTERGENIC
3L	7172640	3L_7172640_SNP [dm3] 3L_7179540_SNP [dm6]	A	C	3.209e^-4	0.994	INTRON Dscam2
2R	12138782	2R_12138782_INS [dm3] 2R_16251277_INS [dm6]	T	TGGATT	3.210e^-4	0.994	INTRON CngA
2R	17192490	2R_17192490_SNP [dm3] 2R_21304985_SNP [dm6]	A	G	3.222e^-4	0.994	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
3L	19133810	3L_19133810_SNP [dm3] 3L_19140710_SNP [dm6]	T	C	3.225e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2L	2837489	2L_2837489_SNP [dm3] 2L_2837489_SNP [dm6]	G	A	3.225e^-4	0.994	SYNONYMOUS_CODING CG3119 UPSTREAM Cpr23B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13845675	3R_13845675_SNP [dm3] 3R_18019953_SNP [dm6]	A	G	3.230e^-4	0.994	INTRON DNaseII
3L	12090619	3L_12090619_SNP [dm3] 3L_12097519_SNP [dm6]	G	A	3.240e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9902437	3R_9902437_SNP [dm3] 3R_14076715_SNP [dm6]	G	A	3.241e^-4	0.994	INTRON foxo
3L	18571112	3L_18571112_SNP [dm3] 3L_18578012_SNP [dm6]	A	G	3.247e^-4	0.994	INTERGENIC
3L	2166036	3L_2166036_SNP [dm3] 3L_2166036_SNP [dm6]	G	C	3.248e^-4	0.994	INTERGENIC
3R	13870716	3R_13870716_SNP [dm3] 3R_18044994_SNP [dm6]	C	T	3.248e^-4	0.994	DOWNSTREAM htl INTERGENIC
2L	17620931	2L_17620931_SNP [dm3] 2L_17620931_SNP [dm6]	G	T	3.254e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	2680255	3R_2680255_SNP [dm3] 3R_6854533_SNP [dm6]	C	T	3.262e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	18015914	2R_18015914_SNP [dm3] 2R_22128409_SNP [dm6]	C	T	3.263e^-4	0.994	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10300732	3L_10300732_SNP [dm3] 3L_10307632_SNP [dm6]	A	G	3.265e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4015352	2L_4015352_SNP [dm3] 2L_4015352_SNP [dm6]	T	C	3.267e^-4	0.994	INTERGENIC
2R	7703256	2R_7703256_SNP [dm3] 2R_11815751_SNP [dm6]	A	T	3.272e^-4	0.994	INTERGENIC
2L	4040465	2L_4040465_SNP [dm3] 2L_4040465_SNP [dm6]	C	T	3.275e^-4	0.994	INTRON ed
X	18275546	X_18275546_SNP [dm3] X_18381513_SNP [dm6]	G	C	3.278e^-4	0.994	DOWNSTREAM betaCOP & 1 other INTERGENIC
2R	17278519	2R_17278519_SNP [dm3] 2R_21391014_SNP [dm6]	A	G	3.282e^-4	0.994	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6531997	3L_6531997_SNP [dm3] 3L_6538897_SNP [dm6]	A	C	3.283e^-4	0.994	INTRON sfl
3R	18394954	3R_18394954_SNP [dm3] 3R_22569232_SNP [dm6]	G	A	3.284e^-4	0.994	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
2R	8119487	2R_8119487_SNP [dm3] 2R_12231982_SNP [dm6]	C	A	3.296e^-4	0.994	INTERGENIC
2R	13685514	2R_13685514_SNP [dm3] 2R_17798009_SNP [dm6]	G	A	3.308e^-4	0.994	UTR_3_PRIME Dhit
2L	18624516	2L_18624516_SNP [dm3] 2L_18624516_SNP [dm6]	C	T	3.322e^-4	0.994	INTRON MESR3
X	6709122	X_6709122_SNP [dm3] X_6815089_SNP [dm6]	C	A	3.335e^-4	0.994	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11737467	2R_11737467_SNP [dm3] 2R_15849962_SNP [dm6]	C	T	3.349e^-4	0.994	INTRON tun
3L	19133351	3L_19133351_SNP [dm3] 3L_19140251_SNP [dm6]	T	G	3.356e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk
X	16809392	X_16809392_SNP [dm3] X_16915359_SNP [dm6]	G	A	3.358e^-4	0.994	INTRON CG4928
3R	14280247	3R_14280247_SNP [dm3] 3R_18454525_SNP [dm6]	G	A	3.363e^-4	0.994	INTRON fru
3R	16419457	3R_16419457_SNP [dm3] 3R_20593735_SNP [dm6]	C	T	3.369e^-4	0.994	START_GAINED bon UTR_5_PRIME bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12567835	3R_12567835_SNP [dm3] 3R_16742113_SNP [dm6]	A	T	3.378e^-4	0.994	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16809490	X_16809490_SNP [dm3] X_16915457_SNP [dm6]	C	A	3.378e^-4	0.994	INTRON CG4928
2L	8532133	2L_8532133_SNP [dm3] 2L_8532133_SNP [dm6]	A	G	3.428e^-4	0.994	INTRON CG17834
2L	1737960	2L_1737960_SNP [dm3] 2L_1737960_SNP [dm6]	A	G	3.429e^-4	0.994	UTR_5_PRIME CG17646 INTRON CG17646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9925980	2L_9925980_SNP [dm3] 2L_9925980_SNP [dm6]	G	T	3.433e^-4	0.994	INTRON CG42366
2L	9607780	2L_9607780_SNP [dm3] 2L_9607780_SNP [dm6]	A	T	3.452e^-4	0.994	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	823655	3R_823655_SNP [dm3] 3R_4997933_SNP [dm6]	C	T	3.458e^-4	0.994	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16849332	3R_16849332_SNP [dm3] 3R_21023610_SNP [dm6]	T	A	3.459e^-4	0.994	UTR_5_PRIME CG17278 DOWNSTREAM Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12058327	X_12058327_SNP [dm3] X_12164294_SNP [dm6]	C	A	3.467e^-4	0.994	INTRON Ten-a
3R	8882686	3R_8882686_SNP [dm3] 3R_13056964_SNP [dm6]	A	C	3.468e^-4	0.994	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12533479	3R_12533479_SNP [dm3] 3R_16707757_SNP [dm6]	C	T	3.482e^-4	0.994	INTRON Ubx
3R	2672852	3R_2672852_SNP [dm3] 3R_6847130_SNP [dm6]	G	A	3.485e^-4	0.994	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5003299	2L_5003299_SNP [dm3] 2L_5003299_SNP [dm6]	G	C	3.496e^-4	0.994	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	14670103	3L_14670103_SNP [dm3] 3L_14677003_SNP [dm6]	A	T	3.499e^-4	0.994	INTRON ome & 1 other
2L	15320971	2L_15320971_SNP [dm3] 2L_15320971_SNP [dm6]	T	G	3.503e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	2226716	3R_2226716_DEL [dm3] 3R_6400994_DEL [dm6]	GACTGTCGTGTTCAG...	G	3.508e^-4	0.994	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
2L	1124668	2L_1124668_SNP [dm3] 2L_1124668_SNP [dm6]	C	T	3.509e^-4	0.994	INTRON Pino	TF binding site mE1_TFBS_HSA
X	752666	X_752666_SNP [dm3] X_858633_SNP [dm6]	C	T	3.509e^-4	0.994	INTRON CG43867
2R	13691460	2R_13691460_SNP [dm3] 2R_17803955_SNP [dm6]	G	A	3.511e^-4	0.994	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	12058356	X_12058356_SNP [dm3] X_12164323_SNP [dm6]	G	C	3.512e^-4	0.994	INTRON Ten-a
3R	21899176	3R_21899176_DEL [dm3] 3R_26073454_DEL [dm6]	GTAGGCCA	AAC	3.517e^-4	0.994	INTERGENIC
X	2596000	X_2596000_SNP [dm3] X_2701967_SNP [dm6]	C	T	3.518e^-4	0.994	SYNONYMOUS_CODING Csat DOWNSTREAM CG2662	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7611953	3L_7611953_INS [dm3] 3L_7618853_INS [dm6]	A	AA	3.523e^-4	0.994	INTRON CG33275
3L	2746633	3L_2746633_SNP [dm3] 3L_2746633_SNP [dm6]	A	T	3.527e^-4	0.994	INTRON Mrtf	TF binding site mE1_TFBS_HSA
X	17660825	X_17660825_SNP [dm3] X_17766792_SNP [dm6]	A	C	3.537e^-4	0.994	INTERGENIC	silencer mE1_HDAC_PRE
3L	11038258	3L_11038258_DEL [dm3] 3L_11045158_DEL [dm6]	TAG	C	3.540e^-4	0.994	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	5095009	2R_5095009_SNP [dm3] 2R_9207504_SNP [dm6]	C	T	3.540e^-4	0.994	UPSTREAM VhaAC45 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9474161	2R_9474161_SNP [dm3] 2R_13586656_SNP [dm6]	T	C	3.540e^-4	0.994	INTRON CG6191 & 1 other
2L	8772809	2L_8772809_SNP [dm3] 2L_8772809_SNP [dm6]	A	T	3.558e^-4	0.994	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2L	1030937	2L_1030937_SNP [dm3] 2L_1030937_SNP [dm6]	C	T	3.562e^-4	0.994	INTRON IA-2
3R	23225070	3R_23225070_SNP [dm3] 3R_27399348_SNP [dm6]	C	A	3.562e^-4	0.994	INTRON side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6834857	2R_6834857_SNP [dm3] 2R_10947352_SNP [dm6]	C	T	3.563e^-4	0.994	DOWNSTREAM CR45228 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	22556710	3L_22556710_SNP [dm3] 3L_22563610_SNP [dm6]	A	G	3.567e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22202149	3L_22202149_SNP [dm3] 3L_22209049_SNP [dm6]	G	A	3.572e^-4	0.994	INTRON olf413
3R	21908088	3R_21908088_SNP [dm3] 3R_26082366_SNP [dm6]	A	G	3.577e^-4	0.994	INTRON dys	TF binding site mE1_TFBS_cad
2L	15320943	2L_15320943_SNP [dm3] 2L_15320943_SNP [dm6]	C	T	3.588e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3R	25228954	3R_25228954_SNP [dm3] 3R_29403232_SNP [dm6]	G	A	3.589e^-4	0.994	INTRON Ptp99A
2R	17128599	2R_17128599_SNP [dm3] 2R_21241094_SNP [dm6]	C	A	3.594e^-4	0.994	INTRON ASPP
3L	2171661	3L_2171661_SNP [dm3] 3L_2171661_SNP [dm6]	A	T	3.597e^-4	0.994	UPSTREAM CG5704 EXON CR15821
2L	9608815	2L_9608815_SNP [dm3] 2L_9608815_SNP [dm6]	A	C	3.604e^-4	0.994	UTR_5_PRIME gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5420853	2L_5420853_SNP [dm3] 2L_5420853_SNP [dm6]	G	T	3.605e^-4	0.994	INTERGENIC
2R	19644583	2R_19644583_SNP [dm3] 2R_23757060_SNP [dm6]	T	A	3.616e^-4	0.994	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
X	8451556	X_8451556_SNP [dm3] X_8557523_SNP [dm6]	C	T	3.630e^-4	0.994	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15320319	2L_15320319_SNP [dm3] 2L_15320319_SNP [dm6]	C	G	3.630e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8912504	3L_8912504_SNP [dm3] 3L_8919404_SNP [dm6]	G	T	3.635e^-4	0.994	INTRON Tsp66E
2R	8547127	2R_8547127_SNP [dm3] 2R_12659622_SNP [dm6]	A	T	3.635e^-4	0.994	UTR_3_PRIME nemy DOWNSTREAM CG8646
2L	20532958	2L_20532958_SNP [dm3] 2L_20532958_SNP [dm6]	G	A	3.637e^-4	0.994	INTERGENIC
2L	6098390	2L_6098390_SNP [dm3] 2L_6098390_SNP [dm6]	A	G	3.641e^-4	0.994	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14670092	3L_14670092_SNP [dm3] 3L_14676992_SNP [dm6]	A	G	3.647e^-4	0.994	INTRON ome & 1 other
3R	12581731	3R_12581731_SNP [dm3] 3R_16756009_SNP [dm6]	G	T	3.664e^-4	0.994	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22188315	3R_22188315_SNP [dm3] 3R_26362593_SNP [dm6]	T	C	3.664e^-4	0.994	DOWNSTREAM CG33970 INTERGENIC
3L	22299930	3L_22299930_SNP [dm3] 3L_22306830_SNP [dm6]	C	A	3.664e^-4	0.994	NON_SYNONYMOUS_CODING Ten-m INTRON Ten-m
X	14703852	X_14703852_INS [dm3] X_14809819_INS [dm6]	A	ATAA	3.666e^-4	0.994	INTRON rut
2R	7039502	2R_7039502_SNP [dm3] 2R_11151997_SNP [dm6]	T	C	3.669e^-4	0.994	INTRON CG13229
3R	9686170	3R_9686170_SNP [dm3] 3R_13860448_SNP [dm6]	C	G	3.676e^-4	0.994	INTERGENIC
2R	4692547	2R_4692547_SNP [dm3] 2R_8805042_SNP [dm6]	A	T	3.686e^-4	0.994	INTRON sns
3L	8085580	3L_8085580_SNP [dm3] 3L_8092480_SNP [dm6]	A	C	3.687e^-4	0.994	UPSTREAM CG7565 INTRON Ect4
3R	21913681	3R_21913681_SNP [dm3] 3R_26087959_SNP [dm6]	G	A	3.706e^-4	0.994	INTRON dys
X	15774461	X_15774461_SNP [dm3] X_15880428_SNP [dm6]	A	G	3.708e^-4	0.994	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_sens
3R	19420849	3R_19420849_SNP [dm3] 3R_23595127_SNP [dm6]	A	G	3.711e^-4	0.994	SYNONYMOUS_CODING CG16723
2R	6330895	2R_6330895_SNP [dm3] 2R_10443390_SNP [dm6]	C	G	3.711e^-4	0.994	UPSTREAM Galphao INTRON Galphao
2L	1186174	2L_1186174_SNP [dm3] 2L_1186174_SNP [dm6]	C	T	3.712e^-4	0.994	UPSTREAM CG5001 DOWNSTREAM Tgt INTRON CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9169754	2L_9169754_SNP [dm3] 2L_9169754_SNP [dm6]	A	G	3.716e^-4	0.994	INTRON tai	TF binding site mE1_TFBS_HSA
2L	4062753	2L_4062753_SNP [dm3] 2L_4062753_SNP [dm6]	C	T	3.717e^-4	0.994	INTRON ed
X	16808372	X_16808372_SNP [dm3] X_16914339_SNP [dm6]	T	G	3.719e^-4	0.994	INTRON CG4928	TF binding site mE1_TFBS_HSA
3R	19425198	3R_19425198_SNP [dm3] 3R_23599476_SNP [dm6]	C	T	3.726e^-4	0.994	UPSTREAM CG10183 INTERGENIC
2L	2809412	2L_2809412_SNP [dm3] 2L_2809412_SNP [dm6]	T	C	3.732e^-4	0.994	SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo
3R	12567345	3R_12567345_SNP [dm3] 3R_16741623_SNP [dm6]	T	C	3.740e^-4	0.994	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	12340847	2R_12340847_SNP [dm3] 2R_16453342_SNP [dm6]	C	A	3.752e^-4	0.994	INTERGENIC
X	13260666	X_13260666_SNP [dm3] X_13366633_SNP [dm6]	A	G	3.780e^-4	0.994	UTR_3_PRIME Syt12
3L	4030046	3L_4030046_SNP [dm3] 3L_4030046_SNP [dm6]	A	C	3.785e^-4	0.994	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
2L	14379595	2L_14379595_SNP [dm3] 2L_14379595_SNP [dm6]	G	T	3.789e^-4	0.994	INTRON ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12150660	3L_12150660_SNP [dm3] 3L_12157560_SNP [dm6]	A	G	3.789e^-4	0.994	UTR_3_PRIME CG9760 DOWNSTREAM Nrx-IV	TF binding site mE1_TFBS_cad
2R	1121188	2R_1121188_SNP [dm3] 2R_5233683_SNP [dm6]	A	G	3.798e^-4	0.994	INTRON Nipped-A	transposable element FlyBase
2R	9815208	2R_9815208_SNP [dm3] 2R_13927703_SNP [dm6]	T	A	3.800e^-4	0.994	INTRON shot	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	17207964	X_17207964_SNP [dm3] X_17313931_SNP [dm6]	C	A	3.802e^-4	0.994	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	17401548	X_17401548_SNP [dm3] X_17507515_SNP [dm6]	G	T	3.804e^-4	0.994	UPSTREAM CG43658 INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12589076	3R_12589076_SNP [dm3] 3R_16763354_SNP [dm6]	C	G	3.807e^-4	0.994	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16340847	2L_16340847_SNP [dm3] 2L_16340847_SNP [dm6]	G	T	3.833e^-4	0.994	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_sens
2L	12524578	2L_12524578_SNP [dm3] 2L_12524578_SNP [dm6]	G	A	3.834e^-4	0.994	INTRON bun
2R	17985329	2R_17985329_SNP [dm3] 2R_22097824_SNP [dm6]	A	G	3.849e^-4	0.994	INTRON CG11073
3R	24939631	3R_24939631_SNP [dm3] 3R_29113909_SNP [dm6]	C	A	3.856e^-4	0.994	INTRON CG11876	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19555204	2R_19555204_SNP [dm3] 2R_23667681_SNP [dm6]	C	T	3.867e^-4	0.994	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	19331868	2R_19331868_SNP [dm3] 2R_23444345_SNP [dm6]	A	G	3.871e^-4	0.994	START_GAINED CG43795 UTR_5_PRIME CG43795
2L	20532961	2L_20532961_SNP [dm3] 2L_20532961_SNP [dm6]	G	A	3.873e^-4	0.994	INTERGENIC
3R	13319565	3R_13319565_SNP [dm3] 3R_17493843_SNP [dm6]	G	A	3.875e^-4	0.994	INTRON Dscam3
2R	19383253	2R_19383253_SNP [dm3] 2R_23495730_SNP [dm6]	T	C	3.876e^-4	0.994	INTERGENIC
2L	9607776	2L_9607776_SNP [dm3] 2L_9607776_SNP [dm6]	G	A	3.882e^-4	0.994	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8634861	2L_8634861_SNP [dm3] 2L_8634861_SNP [dm6]	T	C	3.883e^-4	0.994	INTRON Sema-1a
3R	12590494	3R_12590494_SNP [dm3] 3R_16764772_SNP [dm6]	G	T	3.884e^-4	0.994	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2157840	3L_2157840_SNP [dm3] 3L_2157840_SNP [dm6]	C	T	3.886e^-4	0.994	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19145479	2L_19145479_SNP [dm3] 2L_19145479_SNP [dm6]	G	C	3.891e^-4	0.994	INTRON brat
2R	8430337	2R_8430337_SNP [dm3] 2R_12542832_SNP [dm6]	A	C	3.895e^-4	0.994	INTRON fra
X	21960398	X_21960398_SNP [dm3] X_22558562_SNP [dm6]	A	G	3.896e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	17867701	2R_17867701_SNP [dm3] 2R_21980196_SNP [dm6]	A	G	3.897e^-4	0.994	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3L	13258078	3L_13258078_SNP [dm3] 3L_13264978_SNP [dm6]	T	A	3.901e^-4	0.994	INTRON caps
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	3.912e^-4	0.994	INTERGENIC
2R	7703227	2R_7703227_SNP [dm3] 2R_11815722_SNP [dm6]	G	T	3.914e^-4	0.994	INTERGENIC
X	16757817	X_16757817_SNP [dm3] X_16863784_SNP [dm6]	A	T	3.915e^-4	0.994	INTRON CG13003
X	13907089	X_13907089_SNP [dm3] X_14013056_SNP [dm6]	T	G	3.930e^-4	0.994	INTERGENIC
3R	10907998	3R_10907998_SNP [dm3] 3R_15082276_SNP [dm6]	A	G	3.934e^-4	0.994	INTRON CG6966	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13691459	2R_13691459_SNP [dm3] 2R_17803954_SNP [dm6]	C	T	3.934e^-4	0.994	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	5623788	3L_5623788_SNP [dm3] 3L_5630688_SNP [dm6]	G	A	3.935e^-4	0.994	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	2837540	2L_2837540_SNP [dm3] 2L_2837540_SNP [dm6]	C	A	3.938e^-4	0.994	NON_SYNONYMOUS_CODING CG3119 UPSTREAM Cpr23B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16500036	2R_16500036_SNP [dm3] 2R_20612531_SNP [dm6]	A	T	3.942e^-4	0.994	INTRON Hil
3R	12082446	3R_12082446_SNP [dm3] 3R_16256724_SNP [dm6]	C	T	3.950e^-4	0.994	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	4339654	2L_4339654_SNP [dm3] 2L_4339654_SNP [dm6]	A	T	3.951e^-4	0.994	INTRON Atet	TF binding site mE1_TFBS_inv
2L	9607784	2L_9607784_SNP [dm3] 2L_9607784_SNP [dm6]	G	T	3.956e^-4	0.994	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2837357	2L_2837357_SNP [dm3] 2L_2837357_SNP [dm6]	T	C	3.962e^-4	0.994	SYNONYMOUS_CODING CG3119	TF binding site mE1_TFBS_cad
3L	17473928	3L_17473928_SNP [dm3] 3L_17480828_SNP [dm6]	G	T	3.972e^-4	0.994	NON_SYNONYMOUS_CODING CG6333 DOWNSTREAM qjt
X	16759036	X_16759036_SNP [dm3] X_16865003_SNP [dm6]	T	A	3.979e^-4	0.994	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	10378788	3R_10378788_SNP [dm3] 3R_14553066_SNP [dm6]	G	T	3.983e^-4	0.994	INTRON Pde6
2R	19465158	2R_19465158_SNP [dm3] 2R_23577635_SNP [dm6]	G	A	3.989e^-4	0.994	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	2837616	2L_2837616_SNP [dm3] 2L_2837616_SNP [dm6]	C	T	4.005e^-4	0.994	NON_SYNONYMOUS_CODING CG3119 UPSTREAM Cpr23B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16380066	3L_16380066_SNP [dm3] 3L_16386966_SNP [dm6]	A	G	4.029e^-4	0.994	INTRON RAF2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6764338	2L_6764338_SNP [dm3] 2L_6764338_SNP [dm6]	T	C	4.031e^-4	0.994	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	18440394	3R_18440394_SNP [dm3] 3R_22614672_SNP [dm6]	A	C	4.037e^-4	0.994	SYNONYMOUS_CODING EF-G2	TF binding site mE1_TFBS_sens
2R	11702096	2R_11702096_SNP [dm3] 2R_15814591_SNP [dm6]	G	A	4.041e^-4	0.994	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18375830	3L_18375830_SNP [dm3] 3L_18382730_SNP [dm6]	T	A	4.041e^-4	0.994	INTERGENIC
X	12445832	X_12445832_SNP [dm3] X_12551799_SNP [dm6]	T	C	4.065e^-4	0.994	INTRON CG43921
2L	3820764	2L_3820764_SNP [dm3] 2L_3820764_SNP [dm6]	C	T	4.070e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17146213	3R_17146213_DEL [dm3] 3R_21320491_DEL [dm6]	ACACACTACAA...	A	4.072e^-4	0.994	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
X	8016829	X_8016829_SNP [dm3] X_8122796_SNP [dm6]	C	T	4.079e^-4	0.994	INTRON cyr
X	17949804	X_17949804_DEL [dm3] X_18055771_DEL [dm6]	ATACA	A	4.081e^-4	0.994	INTRON Sh
3R	23289796	3R_23289796_SNP [dm3] 3R_27464074_SNP [dm6]	T	C	4.082e^-4	0.994	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20524302	2L_20524302_SNP [dm3] 2L_20524302_SNP [dm6]	T	C	4.082e^-4	0.994	INTERGENIC
X	16708548	X_16708548_SNP [dm3] X_16814515_SNP [dm6]	A	C	4.085e^-4	0.994	DOWNSTREAM CR44129 INTRON CG4829
2R	13136781	2R_13136781_DEL [dm3] 2R_17249276_DEL [dm6]	CTGTC	C	4.090e^-4	0.994	INTRON mbl
2L	9616313	2L_9616313_DEL [dm3] 2L_9616313_DEL [dm6]	GCTAAT	A	4.102e^-4	0.994	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
3L	14682162	3L_14682162_SNP [dm3] 3L_14689062_SNP [dm6]	T	C	4.103e^-4	0.994	INTRON ome
2R	8919265	2R_8919265_SNP [dm3] 2R_13031760_SNP [dm6]	G	T	4.112e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22172375	3L_22172375_SNP [dm3] 3L_22179275_SNP [dm6]	A	T	4.116e^-4	0.994	INTRON olf413	TF binding site BDTNP1_TFBS_da
3R	22480630	3R_22480630_SNP [dm3] 3R_26654908_SNP [dm6]	C	G	4.140e^-4	0.994	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2L	6764307	2L_6764307_SNP [dm3] 2L_6764307_SNP [dm6]	C	T	4.141e^-4	0.994	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3L	17323549	3L_17323549_SNP [dm3] 3L_17330449_SNP [dm6]	A	G	4.172e^-4	0.994	INTERGENIC
3R	25331378	3R_25331378_SNP [dm3] 3R_29505656_SNP [dm6]	T	C	4.173e^-4	0.994	INTERGENIC
3R	24307024	3R_24307024_SNP [dm3] 3R_28481302_SNP [dm6]	C	T	4.176e^-4	0.994	INTERGENIC
2L	4296576	2L_4296576_SNP [dm3] 2L_4296576_SNP [dm6]	T	C	4.177e^-4	0.994	INTRON tutl
2L	9599057	2L_9599057_SNP [dm3] 2L_9599057_SNP [dm6]	A	G	4.184e^-4	0.994	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9599072	2L_9599072_SNP [dm3] 2L_9599072_SNP [dm6]	A	G	4.184e^-4	0.994	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18926922	3L_18926922_SNP [dm3] 3L_18933822_SNP [dm6]	C	G	4.189e^-4	0.994	INTRON CG32204
3L	2691737	3L_2691737_SNP [dm3] 3L_2691737_SNP [dm6]	G	A	4.204e^-4	0.994	INTRON Fife
2L	16367464	2L_16367464_SNP [dm3] 2L_16367464_SNP [dm6]	A	G	4.206e^-4	0.994	DOWNSTREAM jhamt INTERGENIC
2R	19380101	2R_19380101_SNP [dm3] 2R_23492578_SNP [dm6]	G	C	4.209e^-4	0.994	DOWNSTREAM CG43795 INTERGENIC
2R	19325542	2R_19325542_SNP [dm3] 2R_23438019_SNP [dm6]	T	C	4.221e^-4	0.994	INTERGENIC
2R	19325551	2R_19325551_SNP [dm3] 2R_23438028_SNP [dm6]	C	T	4.221e^-4	0.994	INTERGENIC
3R	22480626	3R_22480626_SNP [dm3] 3R_26654904_SNP [dm6]	C	T	4.231e^-4	0.994	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2R	19359069	2R_19359069_SNP [dm3] 2R_23471546_SNP [dm6]	G	A	4.246e^-4	0.994	SYNONYMOUS_CODING Or59b DOWNSTREAM Or59c INTRON CG43795
3L	9481360	3L_9481360_SNP [dm3] 3L_9488260_SNP [dm6]	C	A	4.256e^-4	0.994	UPSTREAM pall INTRON CG32036	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20895945	3L_20895945_SNP [dm3] 3L_20902845_SNP [dm6]	T	G	4.262e^-4	0.994	DOWNSTREAM CR45383 INTERGENIC
2R	13685435	2R_13685435_SNP [dm3] 2R_17797930_SNP [dm6]	C	T	4.264e^-4	0.994	UTR_3_PRIME Dhit
3R	18840776	3R_18840776_SNP [dm3] 3R_23015054_SNP [dm6]	T	C	4.268e^-4	0.994	NON_SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
2L	2636663	2L_2636663_SNP [dm3] 2L_2636663_SNP [dm6]	A	G	4.268e^-4	0.994	INTERGENIC
2L	16428907	2L_16428907_SNP [dm3] 2L_16428907_SNP [dm6]	C	T	4.269e^-4	0.994	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4693692	3L_4693692_SNP [dm3] 3L_4693692_SNP [dm6]	A	G	4.277e^-4	0.994	DOWNSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7045498	2R_7045498_SNP [dm3] 2R_11157993_SNP [dm6]	T	A	4.278e^-4	0.994	INTRON CG13229	transposable element FlyBase
3R	5013711	3R_5013711_SNP [dm3] 3R_9187989_SNP [dm6]	G	T	4.291e^-4	0.994	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22188288	3R_22188288_SNP [dm3] 3R_26362566_SNP [dm6]	A	T	4.295e^-4	0.994	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
3L	18564178	3L_18564178_SNP [dm3] 3L_18571078_SNP [dm6]	G	T	4.302e^-4	0.994	INTRON AstC-R1
2R	9452431	2R_9452431_SNP [dm3] 2R_13564926_SNP [dm6]	T	C	4.303e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	18747435	2R_18747435_SNP [dm3] 2R_22859912_SNP [dm6]	T	A	4.311e^-4	0.994	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18895100	2L_18895100_SNP [dm3] 2L_18895100_SNP [dm6]	G	A	4.313e^-4	0.994	EXON CR44737	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21960887	X_21960887_INS [dm3] X_22559051_INS [dm6]	C	CGAAAATCACTTTGCATCTG...	4.314e^-4	0.994	INTERGENIC	transposable element FlyBase
3L	19039037	3L_19039037_SNP [dm3] 3L_19045937_SNP [dm6]	G	T	4.319e^-4	0.994	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3499565	3L_3499565_SNP [dm3] 3L_3499565_SNP [dm6]	T	G	4.320e^-4	0.994	INTRON CG42324
2R	19331842	2R_19331842_SNP [dm3] 2R_23444319_SNP [dm6]	G	A	4.329e^-4	0.994	UTR_5_PRIME CG43795	TF binding site BDTNP1_TFBS_dl
2L	9518498	2L_9518498_SNP [dm3] 2L_9518498_SNP [dm6]	C	T	4.333e^-4	0.994	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_inv
3R	1025034	3R_1025034_SNP [dm3] 3R_5199312_SNP [dm6]	G	T	4.342e^-4	0.994	INTRON cno	TF binding site mE1_TFBS_HSA
3R	23289815	3R_23289815_SNP [dm3] 3R_27464093_SNP [dm6]	C	T	4.350e^-4	0.994	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_cad
X	16131955	X_16131955_SNP [dm3] X_16237922_SNP [dm6]	A	T	4.355e^-4	0.994	INTERGENIC
2R	10738201	2R_10738201_DEL [dm3] 2R_14850696_DEL [dm6]	CGTGA	C	4.358e^-4	0.994	INTRON SMC2
3L	19028203	3L_19028203_SNP [dm3] 3L_19035103_SNP [dm6]	A	G	4.370e^-4	0.994	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14042137	2L_14042137_DEL [dm3] 2L_14042137_DEL [dm6]	AATA	A	4.372e^-4	0.994	UTR_5_PRIME nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2R	20441829	2R_20441829_SNP [dm3] 2R_24554306_SNP [dm6]	C	T	4.373e^-4	0.994	INTRON CG4622 & 1 other
3L	18247183	3L_18247183_SNP [dm3] 3L_18254083_SNP [dm6]	T	C	4.376e^-4	0.994	INTERGENIC
2L	1263306	2L_1263306_SNP [dm3] 2L_1263306_SNP [dm6]	C	T	4.396e^-4	0.994	INTRON robo3
3L	9851032	3L_9851032_SNP [dm3] 3L_9857932_SNP [dm6]	G	A	4.396e^-4	0.994	UTR_3_PRIME CG10809
3L	11153526	3L_11153526_SNP [dm3] 3L_11160426_SNP [dm6]	G	A	4.403e^-4	0.994	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
2L	9860558	2L_9860558_SNP [dm3] 2L_9860558_SNP [dm6]	C	A	4.405e^-4	0.994	INTRON nAChRalpha6
3R	26090328	3R_26090328_SNP [dm3] 3R_30264606_SNP [dm6]	C	G	4.415e^-4	0.994	INTERGENIC
3L	12270576	3L_12270576_SNP [dm3] 3L_12277476_SNP [dm6]	T	C	4.415e^-4	0.994	UPSTREAM CG10426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13897189	3R_13897189_SNP [dm3] 3R_18071467_SNP [dm6]	T	G	4.416e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad
X	17240992	X_17240992_SNP [dm3] X_17346959_SNP [dm6]	G	C	4.427e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
X	6263497	X_6263497_SNP [dm3] X_6369464_SNP [dm6]	C	T	4.443e^-4	0.994	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4457261	X_4457261_SNP [dm3] X_4563228_SNP [dm6]	T	C	4.445e^-4	0.994	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16340848	2L_16340848_SNP [dm3] 2L_16340848_SNP [dm6]	G	T	4.451e^-4	0.994	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_sens
X	17249847	X_17249847_SNP [dm3] X_17355814_SNP [dm6]	G	A	4.459e^-4	0.994	INTERGENIC
3R	26843527	3R_26843527_SNP [dm3] 3R_31017805_SNP [dm6]	G	T	4.460e^-4	0.994	UPSTREAM 5-HT7 INTERGENIC
3L	18151762	3L_18151762_SNP [dm3] 3L_18158662_SNP [dm6]	C	G	4.468e^-4	0.994	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10954764	3R_10954764_SNP [dm3] 3R_15129042_SNP [dm6]	C	T	4.469e^-4	0.994	INTRON CG42788
2R	6178885	2R_6178885_DEL [dm3] 2R_10291380_DEL [dm6]	TCTA	T	4.476e^-4	0.994	INTRON CAP
3L	3238941	3L_3238941_SNP [dm3] 3L_3238941_SNP [dm6]	T	G	4.484e^-4	0.994	UTR_5_PRIME CG17746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19477563	2R_19477563_SNP [dm3] 2R_23590040_SNP [dm6]	A	C	4.485e^-4	0.994	INTRON apt
2R	7039474	2R_7039474_SNP [dm3] 2R_11151969_SNP [dm6]	G	A	4.490e^-4	0.994	INTRON CG13229
3R	8122231	3R_8122231_SNP [dm3] 3R_12296509_SNP [dm6]	C	A	4.490e^-4	0.994	DOWNSTREAM svp INTRON svp
2L	9607775	2L_9607775_SNP [dm3] 2L_9607775_SNP [dm6]	A	T	4.495e^-4	0.994	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16758934	X_16758934_SNP [dm3] X_16864901_SNP [dm6]	A	G	4.500e^-4	0.994	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	18259094	3L_18259094_SNP [dm3] 3L_18265994_SNP [dm6]	A	G	4.506e^-4	0.994	INTERGENIC
3R	25130788	3R_25130788_SNP [dm3] 3R_29305066_SNP [dm6]	T	C	4.506e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8335378	2L_8335378_SNP [dm3] 2L_8335378_SNP [dm6]	A	T	4.507e^-4	0.994	INTERGENIC
2L	1022454	2L_1022454_SNP [dm3] 2L_1022454_SNP [dm6]	A	T	4.512e^-4	0.994	INTRON IA-2
3L	7166545	3L_7166545_SNP [dm3] 3L_7173445_SNP [dm6]	G	A	4.513e^-4	0.994	SYNONYMOUS_CODING Dscam2 DOWNSTREAM Dscam2
3R	26090223	3R_26090223_SNP [dm3] 3R_30264501_SNP [dm6]	G	A	4.525e^-4	0.994	INTERGENIC
2R	11303900	2R_11303900_SNP [dm3] 2R_15416395_SNP [dm6]	A	G	4.531e^-4	0.994	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8335857	2L_8335857_SNP [dm3] 2L_8335857_SNP [dm6]	A	G	4.533e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20224332	X_20224332_SNP [dm3] X_20353305_SNP [dm6]	G	A	4.534e^-4	0.994	INTERGENIC
3L	2165943	3L_2165943_SNP [dm3] 3L_2165943_SNP [dm6]	A	C	4.537e^-4	0.994	INTERGENIC
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	4.552e^-4	0.994	SYNONYMOUS_CODING CG14820
3L	22556693	3L_22556693_SNP [dm3] 3L_22563593_SNP [dm6]	C	G	4.552e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7703257	2R_7703257_SNP [dm3] 2R_11815752_SNP [dm6]	A	C	4.554e^-4	0.994	INTERGENIC
3L	2170869	3L_2170869_SNP [dm3] 3L_2170869_SNP [dm6]	T	G	4.558e^-4	0.994	UTR_5_PRIME CG5704 DOWNSTREAM CR15821
3L	22493916	3L_22493916_SNP [dm3] 3L_22500816_SNP [dm6]	G	A	4.563e^-4	0.994	UPSTREAM CG43312 INTERGENIC
3L	22516910	3L_22516910_SNP [dm3] 3L_22523810_SNP [dm6]	G	T	4.563e^-4	0.994	INTERGENIC
3R	6651408	3R_6651408_SNP [dm3] 3R_10825686_SNP [dm6]	C	T	4.564e^-4	0.994	INTERGENIC
2L	9616255	2L_9616255_SNP [dm3] 2L_9616255_SNP [dm6]	G	T	4.568e^-4	0.994	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
3L	1850586	3L_1850586_SNP [dm3] 3L_1850586_SNP [dm6]	A	T	4.569e^-4	0.994	DOWNSTREAM CG13936 INTERGENIC
2R	19380532	2R_19380532_SNP [dm3] 2R_23493009_SNP [dm6]	A	G	4.570e^-4	0.994	INTERGENIC
3R	1140264	3R_1140264_SNP [dm3] 3R_5314542_SNP [dm6]	G	A	4.572e^-4	0.994	INTRON mtd
3L	9481355	3L_9481355_SNP [dm3] 3L_9488255_SNP [dm6]	A	G	4.582e^-4	0.994	UPSTREAM pall INTRON CG32036	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15266378	3R_15266378_SNP [dm3] 3R_19440656_SNP [dm6]	C	A	4.584e^-4	0.994	INTRON CG31221
3R	24458231	3R_24458231_SNP [dm3] 3R_28632509_SNP [dm6]	C	G	4.585e^-4	0.994	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15804033	3R_15804033_SNP [dm3] 3R_19978311_SNP [dm6]	A	G	4.587e^-4	0.994	NON_SYNONYMOUS_CODING CG31213 SPLICE_SITE_REGION CG31213 INTRON Hs6st
2L	6535198	2L_6535198_SNP [dm3] 2L_6535198_SNP [dm6]	A	G	4.594e^-4	0.994	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	3625758	3L_3625758_SNP [dm3] 3L_3625758_SNP [dm6]	C	G	4.601e^-4	0.994	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25133452	3R_25133452_SNP [dm3] 3R_29307730_SNP [dm6]	G	A	4.615e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18444475	3R_18444475_SNP [dm3] 3R_22618753_SNP [dm6]	G	A	4.622e^-4	0.994	SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19133338	3L_19133338_SNP [dm3] 3L_19140238_SNP [dm6]	T	A	4.622e^-4	0.994	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk
2R	19362224	2R_19362224_SNP [dm3] 2R_23474701_SNP [dm6]	T	G	4.625e^-4	0.994	UPSTREAM Or59c DOWNSTREAM CG13557 INTRON CG43795
3L	22128194	3L_22128194_SNP [dm3] 3L_22135094_SNP [dm6]	T	A	4.626e^-4	0.994	UPSTREAM olf413 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	10686111	X_10686111_INS [dm3] X_10792078_INS [dm6]	C	CC	4.642e^-4	0.994	UTR_3_PRIME Imp DOWNSTREAM Imp	TF binding site BDTNP1_TFBS_dl
2R	8124548	2R_8124548_SNP [dm3] 2R_12237043_SNP [dm6]	G	T	4.645e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12180828	3R_12180828_SNP [dm3] 3R_16355106_SNP [dm6]	T	C	4.650e^-4	0.994	INTRON CG10311	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2157488	3L_2157488_SNP [dm3] 3L_2157488_SNP [dm6]	G	A	4.651e^-4	0.994	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13037037	3L_13037037_SNP [dm3] 3L_13043937_SNP [dm6]	G	T	4.659e^-4	0.994	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5966501	X_5966501_SNP [dm3] X_6072468_SNP [dm6]	A	C	4.659e^-4	0.994	INTRON Tsp5D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14323316	2L_14323316_SNP [dm3] 2L_14323316_SNP [dm6]	C	G	4.686e^-4	0.994	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2895210	2L_2895210_SNP [dm3] 2L_2895210_SNP [dm6]	C	T	4.701e^-4	0.994	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17222912	2R_17222912_INS [dm3] 2R_21335407_INS [dm6]	A	ATGA	4.704e^-4	0.994	UPSTREAM snmRNA:184 INTRON dom EXON snoRNA:Me28S-G2596	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19360611	2R_19360611_SNP [dm3] 2R_23473088_SNP [dm6]	C	T	4.732e^-4	0.994	SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	2166057	3L_2166057_SNP [dm3] 3L_2166057_SNP [dm6]	T	C	4.736e^-4	0.994	INTERGENIC
2R	9789376	2R_9789376_SNP [dm3] 2R_13901871_SNP [dm6]	G	A	4.756e^-4	0.994	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	20628469	2L_20628469_SNP [dm3] 2L_20628469_SNP [dm6]	A	C	4.771e^-4	0.994	INTERGENIC
3R	12538695	3R_12538695_SNP [dm3] 3R_16712973_SNP [dm6]	A	G	4.775e^-4	0.994	INTRON Ubx
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	4.778e^-4	0.994	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17423426	3L_17423426_SNP [dm3] 3L_17430326_SNP [dm6]	G	C	4.779e^-4	0.994	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc	TF binding site BDTNP1_TFBS_dl
3R	26795966	3R_26795966_SNP [dm3] 3R_30970244_SNP [dm6]	T	C	4.779e^-4	0.994	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4308258	2L_4308258_SNP [dm3] 2L_4308258_SNP [dm6]	C	A	4.796e^-4	0.994	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	12591125	3R_12591125_SNP [dm3] 3R_16765403_SNP [dm6]	G	A	4.803e^-4	0.994	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3331282	3R_3331282_DEL [dm3] 3R_7505560_DEL [dm6]	TT	T	4.805e^-4	0.994	UPSTREAM alpha-Est9 INTERGENIC
3L	11529680	3L_11529680_SNP [dm3] 3L_11536580_SNP [dm6]	G	A	4.809e^-4	0.994	INTRON Mob2
3R	24458234	3R_24458234_SNP [dm3] 3R_28632512_SNP [dm6]	C	T	4.810e^-4	0.994	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10411758	2R_10411758_SNP [dm3] 2R_14524253_SNP [dm6]	A	T	4.811e^-4	0.994	INTERGENIC
2R	19331845	2R_19331845_SNP [dm3] 2R_23444322_SNP [dm6]	T	C	4.814e^-4	0.994	START_GAINED CG43795 UTR_5_PRIME CG43795	TF binding site BDTNP1_TFBS_dl
2L	10315970	2L_10315970_SNP [dm3] 2L_10315970_SNP [dm6]	G	C	4.814e^-4	0.994	INTRON CG4972	TF binding site mE1_TFBS_sens
X	8545712	X_8545712_SNP [dm3] X_8651679_SNP [dm6]	T	C	4.834e^-4	0.994	UPSTREAM oc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	4.836e^-4	0.994	INTERGENIC
2L	9086487	2L_9086487_SNP [dm3] 2L_9086487_SNP [dm6]	A	G	4.841e^-4	0.994	NON_SYNONYMOUS_CODING Toll-4
2L	9086505	2L_9086505_SNP [dm3] 2L_9086505_SNP [dm6]	A	T	4.841e^-4	0.994	NON_SYNONYMOUS_CODING Toll-4
2R	7040287	2R_7040287_SNP [dm3] 2R_11152782_SNP [dm6]	T	G	4.841e^-4	0.994	INTRON CG13229
2L	9600816	2L_9600816_SNP [dm3] 2L_9600816_SNP [dm6]	C	G	4.842e^-4	0.994	NON_SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3861130	2L_3861130_SNP [dm3] 2L_3861130_SNP [dm6]	A	G	4.844e^-4	0.994	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11585047	3R_11585047_SNP [dm3] 3R_15759325_SNP [dm6]	A	T	4.848e^-4	0.994	INTERGENIC
3L	16795330	3L_16795330_SNP [dm3] 3L_16802230_SNP [dm6]	T	C	4.877e^-4	0.994	INTRON CG9674
3L	3239404	3L_3239404_DEL [dm3] 3L_3239404_DEL [dm6]	GATGCG	G	4.877e^-4	0.994	UPSTREAM CG17746 INTRON CG17746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	15066230	2R_15066230_SNP [dm3] 2R_19178725_SNP [dm6]	T	C	4.878e^-4	0.994	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22188307	3R_22188307_SNP [dm3] 3R_26362585_SNP [dm6]	C	G	4.892e^-4	0.994	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
3R	24939617	3R_24939617_SNP [dm3] 3R_29113895_SNP [dm6]	G	T	4.900e^-4	0.994	INTRON CG11876	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17767560	2L_17767560_SNP [dm3] 2L_17767560_SNP [dm6]	T	A	4.901e^-4	0.994	INTRON CadN
2L	7770872	2L_7770872_SNP [dm3] 2L_7770872_SNP [dm6]	A	G	4.906e^-4	0.994	INTRON CG7191
2L	10166709	2L_10166709_SNP [dm3] 2L_10166709_SNP [dm6]	C	G	4.907e^-4	0.994	INTRON CG44153
3L	4984375	3L_4984375_SNP [dm3] 3L_4984375_SNP [dm6]	A	G	4.909e^-4	0.994	INTRON Con
2R	18675562	2R_18675562_SNP [dm3] 2R_22788057_SNP [dm6]	A	T	4.921e^-4	0.994	INTRON CG42260
2R	7039981	2R_7039981_INS [dm3] 2R_11152476_INS [dm6]	T	TTAT	4.922e^-4	0.994	INTRON CG13229
2R	19357665	2R_19357665_SNP [dm3] 2R_23470142_SNP [dm6]	T	C	4.924e^-4	0.994	DOWNSTREAM Or59b INTRON CG43795
2R	8132995	2R_8132995_SNP [dm3] 2R_12245490_SNP [dm6]	A	T	4.927e^-4	0.994	UPSTREAM CG43244 INTERGENIC
X	8779896	X_8779896_INS [dm3] X_8885863_INS [dm6]	A	ATGTCCAACTCAAAAGATCA...	4.936e^-4	0.994	INTRON Moe
X	7316861	X_7316861_SNP [dm3] X_7422828_SNP [dm6]	T	C	4.947e^-4	0.994	DOWNSTREAM CG9657 INTERGENIC
3L	6926025	3L_6926025_SNP [dm3] 3L_6932925_SNP [dm6]	T	A	4.973e^-4	0.994	UPSTREAM CG14820 & 1 other INTERGENIC
3R	21906626	3R_21906626_SNP [dm3] 3R_26080904_SNP [dm6]	G	T	4.981e^-4	0.994	INTRON dys	TF binding site mE1_TFBS_cad
3R	20079037	3R_20079037_SNP [dm3] 3R_24253315_SNP [dm6]	G	C	4.988e^-4	0.994	UTR_3_PRIME jar UPSTREAM CG5706	TF binding site mE1_TFBS_HSA
2L	3712062	2L_3712062_INS [dm3] 2L_3712062_INS [dm6]	T	TGTGGCGC	4.995e^-4	0.994	UTR_3_PRIME CG31955 UPSTREAM cutlet DOWNSTREAM CG31955
2R	11372152	2R_11372152_SNP [dm3] 2R_15484647_SNP [dm6]	G	A	5.011e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Trl
X	19754450	X_19754450_SNP [dm3] X_19860417_SNP [dm6]	C	T	5.015e^-4	0.994	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19098152	3L_19098152_SNP [dm3] 3L_19105052_SNP [dm6]	A	T	5.021e^-4	0.994	DOWNSTREAM CG14082 INTERGENIC
3R	18447747	3R_18447747_SNP [dm3] 3R_22622025_SNP [dm6]	C	T	5.022e^-4	0.994	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19309108	2R_19309108_INS [dm3] 2R_23421585_INS [dm6]	A	ACA	5.024e^-4	0.994	UTR_3_PRIME CG9815
3L	6996649	3L_6996649_SNP [dm3] 3L_7003549_SNP [dm6]	C	T	5.024e^-4	0.994	INTRON Mp
3R	26332447	3R_26332447_SNP [dm3] 3R_30506725_SNP [dm6]	A	G	5.034e^-4	0.994	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
2R	19341504	2R_19341504_SNP [dm3] 2R_23453981_SNP [dm6]	A	G	5.044e^-4	0.994	INTRON CG43795
2R	8132744	2R_8132744_SNP [dm3] 2R_12245239_SNP [dm6]	T	G	5.058e^-4	0.994	UPSTREAM CG43244 INTERGENIC
X	16806589	X_16806589_SNP [dm3] X_16912556_SNP [dm6]	T	G	5.069e^-4	0.994	UPSTREAM CG4928 INTRON CR44754
2L	3423402	2L_3423402_SNP [dm3] 2L_3423402_SNP [dm6]	G	A	5.080e^-4	0.994	UPSTREAM pgant2 INTRON pgant2
X	1481616	X_1481616_SNP [dm3] X_1587583_SNP [dm6]	A	C	5.082e^-4	0.994	INTRON br & 1 other	TF binding site mE1_TFBS_chinmo
X	18948289	X_18948289_SNP [dm3] X_19054256_SNP [dm6]	C	T	5.084e^-4	0.994	INTERGENIC
3L	20936613	3L_20936613_SNP [dm3] 3L_20943513_SNP [dm6]	G	C	5.094e^-4	0.994	INTRON fng	TF binding site mE1_TFBS_HSA
X	17208123	X_17208123_SNP [dm3] X_17314090_SNP [dm6]	T	A	5.098e^-4	0.994	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1416279	3L_1416279_SNP [dm3] 3L_1416279_SNP [dm6]	C	T	5.102e^-4	0.994	UTR_5_PRIME FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	4685583	2R_4685583_SNP [dm3] 2R_8798078_SNP [dm6]	G	C	5.102e^-4	0.994	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	22531860	3L_22531860_SNP [dm3] 3L_22538760_SNP [dm6]	A	G	5.109e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3525973	X_3525973_DEL [dm3] X_3631940_DEL [dm6]	GGCCG	G	5.120e^-4	0.994	INTRON AstA-R1
3L	14682171	3L_14682171_SNP [dm3] 3L_14689071_SNP [dm6]	C	T	5.137e^-4	0.994	INTRON ome
3R	2682990	3R_2682990_SNP [dm3] 3R_6857268_SNP [dm6]	C	A	5.151e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19323730	2R_19323730_SNP [dm3] 2R_23436207_SNP [dm6]	A	C	5.153e^-4	0.994	INTERGENIC
3L	2957614	3L_2957614_SNP [dm3] 3L_2957614_SNP [dm6]	C	T	5.156e^-4	0.994	UTR_3_PRIME Shab
X	16556620	X_16556620_SNP [dm3] X_16662587_SNP [dm6]	G	A	5.168e^-4	0.994	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
2L	17660719	2L_17660719_SNP [dm3] 2L_17660719_SNP [dm6]	G	A	5.168e^-4	0.994	INTRON CadN
3R	5502557	3R_5502557_SNP [dm3] 3R_9676835_SNP [dm6]	G	A	5.171e^-4	0.994	NON_SYNONYMOUS_CODING CG8358	TF binding site mE1_TFBS_sens
3R	27101215	3R_27101215_DEL [dm3] 3R_31275493_DEL [dm6]	AA	A	5.174e^-4	0.994	INTERGENIC
2L	9616283	2L_9616283_SNP [dm3] 2L_9616283_SNP [dm6]	C	T	5.175e^-4	0.994	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
3L	5233145	3L_5233145_SNP [dm3] 3L_5240045_SNP [dm6]	A	G	5.177e^-4	0.994	INTRON shep
2L	10315969	2L_10315969_SNP [dm3] 2L_10315969_SNP [dm6]	G	T	5.181e^-4	0.994	INTRON CG4972	TF binding site mE1_TFBS_sens
X	18046686	X_18046686_DEL [dm3] X_18152653_DEL [dm6]	ATTCCCATTTCCA...	A	5.183e^-4	0.994	INTERGENIC
3R	13857383	3R_13857383_SNP [dm3] 3R_18031661_SNP [dm6]	C	A	5.188e^-4	0.994	INTERGENIC
2R	7703268	2R_7703268_SNP [dm3] 2R_11815763_SNP [dm6]	G	A	5.191e^-4	0.994	INTERGENIC
3L	2157404	3L_2157404_SNP [dm3] 3L_2157404_SNP [dm6]	A	G	5.196e^-4	0.994	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18992573	2R_18992573_SNP [dm3] 2R_23105050_SNP [dm6]	C	A	5.197e^-4	0.994	SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA
X	16758786	X_16758786_SNP [dm3] X_16864753_SNP [dm6]	C	T	5.207e^-4	0.994	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	15049768	2R_15049768_SNP [dm3] 2R_19162263_SNP [dm6]	T	A	5.207e^-4	0.994	UTR_3_PRIME ena DOWNSTREAM ena
3R	25229276	3R_25229276_SNP [dm3] 3R_29403554_SNP [dm6]	C	G	5.208e^-4	0.994	INTRON Ptp99A
3L	3889063	3L_3889063_SNP [dm3] 3L_3889063_SNP [dm6]	T	G	5.217e^-4	0.994	INTERGENIC
3L	14710594	3L_14710594_SNP [dm3] 3L_14717494_SNP [dm6]	T	G	5.237e^-4	0.994	INTRON ome	regulatory region REDfly_CRMs
2L	10100018	2L_10100018_SNP [dm3] 2L_10100018_SNP [dm6]	A	G	5.237e^-4	0.994	INTRON CG34109 & 1 other
2R	11650068	2R_11650068_DEL [dm3] 2R_15762563_DEL [dm6]	TT	T	5.244e^-4	0.994	DOWNSTREAM Zasp52 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA
3L	16387496	3L_16387496_SNP [dm3] 3L_16394396_SNP [dm6]	G	A	5.258e^-4	0.994	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	649909	3L_649909_SNP [dm3] 3L_649909_SNP [dm6]	C	T	5.263e^-4	0.994	INTRON Gale	TF binding site mE1_TFBS_chinmo
2R	18288266	2R_18288266_SNP [dm3] 2R_22400761_SNP [dm6]	A	G	5.264e^-4	0.994	INTRON babos	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13685470	2R_13685470_SNP [dm3] 2R_17797965_SNP [dm6]	G	A	5.269e^-4	0.994	UTR_3_PRIME Dhit
2L	8871065	2L_8871065_SNP [dm3] 2L_8871065_SNP [dm6]	C	T	5.272e^-4	0.994	INTERGENIC
2L	16187332	2L_16187332_SNP [dm3] 2L_16187332_SNP [dm6]	C	A	5.284e^-4	0.994	INTRON Ca-alpha1D	TF binding site mE1_TFBS_kn
2R	17839762	2R_17839762_SNP [dm3] 2R_21952257_SNP [dm6]	G	A	5.285e^-4	0.994	SYNONYMOUS_CODING CG13488
3L	2175107	3L_2175107_SNP [dm3] 3L_2175107_SNP [dm6]	C	A	5.286e^-4	0.994	UPSTREAM CG15820 INTERGENIC
3L	22561284	3L_22561284_SNP [dm3] 3L_22568184_SNP [dm6]	G	A	5.317e^-4	0.994	INTERGENIC
2R	17190808	2R_17190808_SNP [dm3] 2R_21303303_SNP [dm6]	T	C	5.324e^-4	0.994	INTRON CG42672
2L	2794537	2L_2794537_SNP [dm3] 2L_2794537_SNP [dm6]	C	T	5.329e^-4	0.994	INTRON Syt1
2L	4040595	2L_4040595_SNP [dm3] 2L_4040595_SNP [dm6]	C	G	5.333e^-4	0.994	INTRON ed
3L	12287453	3L_12287453_SNP [dm3] 3L_12294353_SNP [dm6]	C	T	5.335e^-4	0.994	INTRON CG4328
2R	13691437	2R_13691437_SNP [dm3] 2R_17803932_SNP [dm6]	T	A	5.337e^-4	0.994	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	17102795	2R_17102795_SNP [dm3] 2R_21215290_SNP [dm6]	C	G	5.339e^-4	0.994	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
3L	22562313	3L_22562313_SNP [dm3] 3L_22569213_SNP [dm6]	C	T	5.349e^-4	0.994	INTERGENIC
3L	14682348	3L_14682348_SNP [dm3] 3L_14689248_SNP [dm6]	T	C	5.381e^-4	0.994	INTRON ome
3L	10879351	3L_10879351_SNP [dm3] 3L_10886251_SNP [dm6]	G	T	5.408e^-4	0.994	UPSTREAM CG6404 INTRON CG6404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19497770	3L_19497770_SNP [dm3] 3L_19504670_SNP [dm6]	A	G	5.410e^-4	0.994	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3R	22188331	3R_22188331_SNP [dm3] 3R_26362609_SNP [dm6]	C	A	5.413e^-4	0.994	DOWNSTREAM CG33970 INTERGENIC
3L	823974	3L_823974_SNP [dm3] 3L_823974_SNP [dm6]	C	T	5.418e^-4	0.994	INTERGENIC
3L	14683892	3L_14683892_SNP [dm3] 3L_14690792_SNP [dm6]	G	T	5.434e^-4	0.994	UPSTREAM CG13477 INTRON ome
3R	2676301	3R_2676301_SNP [dm3] 3R_6850579_SNP [dm6]	G	A	5.437e^-4	0.994	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	12455156	3R_12455156_SNP [dm3] 3R_16629434_SNP [dm6]	T	A	5.452e^-4	0.994	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12152629	3R_12152629_SNP [dm3] 3R_16326907_SNP [dm6]	C	G	5.453e^-4	0.994	NON_SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
3L	22517372	3L_22517372_SNP [dm3] 3L_22524272_SNP [dm6]	G	A	5.453e^-4	0.994	INTERGENIC
2L	1856228	2L_1856228_SNP [dm3] 2L_1856228_SNP [dm6]	G	C	5.456e^-4	0.994	INTRON wry
3L	16690603	3L_16690603_INS [dm3] 3L_16697503_INS [dm6]	T	TT	5.457e^-4	0.994	INTRON Lasp & 1 other EXON CR45179
3L	2177765	3L_2177765_SNP [dm3] 3L_2177765_SNP [dm6]	T	C	5.472e^-4	0.994	INTERGENIC
2L	9532496	2L_9532496_SNP [dm3] 2L_9532496_SNP [dm6]	T	C	5.490e^-4	0.994	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3R	10782147	3R_10782147_SNP [dm3] 3R_14956425_SNP [dm6]	T	C	5.498e^-4	0.994	INTERGENIC
X	11355930	X_11355930_DEL [dm3] X_11461897_DEL [dm6]	ACTGAAAAATTAACCCTCCG...	G	5.507e^-4	0.994	INTRON CG43155	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19445261	3R_19445261_SNP [dm3] 3R_23619539_SNP [dm6]	A	T	5.507e^-4	0.994	INTRON CG31145
2L	15331185	2L_15331185_DEL [dm3] 2L_15331185_DEL [dm6]	ATTAATATGT	GCCTCGG	5.520e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15415003	2R_15415003_SNP [dm3] 2R_19527498_SNP [dm6]	C	T	5.546e^-4	0.994	UTR_3_PRIME sm
2R	6667496	2R_6667496_SNP [dm3] 2R_10779991_SNP [dm6]	G	A	5.555e^-4	0.994	INTRON CG33144
3R	22649738	3R_22649738_DEL [dm3] 3R_26824016_DEL [dm6]	CC	C	5.564e^-4	0.994	INTRON Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	12761741	2R_12761741_SNP [dm3] 2R_16874236_SNP [dm6]	T	C	5.585e^-4	0.994	SPLICE_SITE_REGION CG6435 DOWNSTREAM CG8910 & 1 other INTRON CG6435
3L	10707606	3L_10707606_SNP [dm3] 3L_10714506_SNP [dm6]	A	T	5.587e^-4	0.994	INTERGENIC
3L	14687791	3L_14687791_SNP [dm3] 3L_14694691_SNP [dm6]	A	G	5.604e^-4	0.994	INTRON ome
3L	18259093	3L_18259093_SNP [dm3] 3L_18265993_SNP [dm6]	T	A	5.605e^-4	0.994	INTERGENIC
3R	2743837	3R_2743837_DEL [dm3] 3R_6918115_DEL [dm6]	TAGACATCATCAAAGTTTAA...	T	5.612e^-4	0.994	INTRON Antp
3L	11917929	3L_11917929_SNP [dm3] 3L_11924829_SNP [dm6]	C	A	5.612e^-4	0.994	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11737486	2R_11737486_SNP [dm3] 2R_15849981_SNP [dm6]	G	A	5.629e^-4	0.994	INTRON tun
3R	26332516	3R_26332516_SNP [dm3] 3R_30506794_SNP [dm6]	T	C	5.630e^-4	0.994	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
3R	25430830	3R_25430830_SNP [dm3] 3R_29605108_SNP [dm6]	A	G	5.650e^-4	0.994	INTRON alph
3R	26277969	3R_26277969_SNP [dm3] 3R_30452247_SNP [dm6]	C	G	5.666e^-4	0.994	INTRON aralar1
2L	2837582	2L_2837582_SNP [dm3] 2L_2837582_SNP [dm6]	G	A	5.668e^-4	0.994	SYNONYMOUS_CODING CG3119 UPSTREAM Cpr23B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5027908	2L_5027908_SNP [dm3] 2L_5027908_SNP [dm6]	A	G	5.668e^-4	0.994	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5966403	X_5966403_SNP [dm3] X_6072370_SNP [dm6]	G	A	5.669e^-4	0.994	INTRON Tsp5D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14824558	2R_14824558_SNP [dm3] 2R_18937053_SNP [dm6]	A	T	5.672e^-4	0.994	INTRON sano
3R	823228	3R_823228_SNP [dm3] 3R_4997506_SNP [dm6]	T	A	5.689e^-4	0.994	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15850080	3R_15850080_SNP [dm3] 3R_20024358_SNP [dm6]	T	G	5.692e^-4	0.994	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	25706803	3R_25706803_DEL [dm3] 3R_29881081_DEL [dm6]	TCAAAAGCGAAACG...	T	5.693e^-4	0.994	INTRON CG31038
3L	2173244	3L_2173244_SNP [dm3] 3L_2173244_SNP [dm6]	T	C	5.695e^-4	0.994	SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3L	4177217	3L_4177217_SNP [dm3] 3L_4177217_SNP [dm6]	T	C	5.711e^-4	0.994	SPLICE_SITE_REGION Teh4 INTRON CG18675 & 1 other
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	5.712e^-4	0.994	INTRON ome
3R	9895658	3R_9895658_SNP [dm3] 3R_14069936_SNP [dm6]	C	T	5.714e^-4	0.994	INTRON foxo
3L	22352739	3L_22352739_DEL [dm3] 3L_22359639_DEL [dm6]	TCCAGCT	C	5.719e^-4	0.994	INTRON Ten-m
2L	19101497	2L_19101497_SNP [dm3] 2L_19101497_SNP [dm6]	T	C	5.722e^-4	0.994	UPSTREAM CG17344 & 1 other INTRON Lim3
3R	14869673	3R_14869673_SNP [dm3] 3R_19043951_SNP [dm6]	G	T	5.724e^-4	0.994	NON_SYNONYMOUS_CODING CG6026 DOWNSTREAM cdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20628490	2L_20628490_SNP [dm3] 2L_20628490_SNP [dm6]	T	A	5.724e^-4	0.994	INTERGENIC
2L	16569828	2L_16569828_SNP [dm3] 2L_16569828_SNP [dm6]	T	A	5.725e^-4	0.994	INTRON CG42389
3L	19109166	3L_19109166_SNP [dm3] 3L_19116066_SNP [dm6]	C	T	5.730e^-4	0.994	INTRON CG14082
2R	17337214	2R_17337214_SNP [dm3] 2R_21449709_SNP [dm6]	G	A	5.735e^-4	0.994	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20632574	2L_20632574_SNP [dm3] 2L_20632574_SNP [dm6]	G	C	5.737e^-4	0.994	INTERGENIC
X	15862356	X_15862356_SNP [dm3] X_15968323_SNP [dm6]	A	T	5.749e^-4	0.994	INTRON mmd
2L	15264957	2L_15264957_SNP [dm3] 2L_15264957_SNP [dm6]	A	T	5.752e^-4	0.994	UPSTREAM yuri DOWNSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6996701	3L_6996701_SNP [dm3] 3L_7003601_SNP [dm6]	C	T	5.759e^-4	0.994	INTRON Mp
2R	16048494	2R_16048494_SNP [dm3] 2R_20160989_SNP [dm6]	C	G	5.768e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13950063	2L_13950063_SNP [dm3] 2L_13950063_SNP [dm6]	T	C	5.779e^-4	0.994	INTRON Ance-3

By genomic position
Variant impact
Gene name

Lifespan_18C phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results